Sender: LSF System <lsf@node1532>
Subject: Job 9878404: <iteration_179984> Done

Job <iteration_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1532>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984> was used as the working directory.
Started at Sat Oct  6 05:00:10 2012
Results reported at Sat Oct  6 05:00:19 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
echo starting
ls iteration*/exited 2>&1
return_code=$?
if [ ${return_code} -eq 0 ]; then
echo some scatter or gather jobs failed;
echo ${return_code} > exited;
exit 1;
fi
ls exited 2>&1
return_code=$?
if [ ${return_code} -eq 0 ]; then
echo previous iteration failed;
echo ${return_code} > exited;
exit 1;
fi
/xchip/tcga/gdac_prod/source/analysis_pipeline/scripts/scatter-gather-iterator.py /xchip/tcga/gdac_prod/source/analysis_pipeline/scripts/iterative-scatter-gather.py --job-suffix 179984 --priority 65 cga /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/scatter-gather.xml /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
return_code=$?
if [ ${return_code} -ne 0 ]; then
echo iterator failed ${return_code};
echo ${return_code} > exited;
exit ${return_code};
fi
cat iteration1/jobSubmissions.txt >> jobSubmissions.txt
rm -f iteration1/jobSubmissions.txt
echo '*** Scatter Gather stdandard out:' 2>&1
cat iteration1/scatter-gather.out.txt 2>&1
rm -f iteration1/scatter-gather.out.txt 2>&1
echo '*** Scatter Gather stdandard err:' 2>&1
cat iteration1/scatter-gather.err.txt 2>&1
rm -f iteration1/scatter-gather.err.txt 2>&1
ls iteration1/sg-next-iteration.txt 2>&1
return_code=$?
if [ ${return_code} -eq 0 ]; then
rm -f iteration1/sg-next-iteration.txt
else
rm -f scatterGatherParameters.txt
rm -f programParameters.txt
mv iteration1/* /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984
rmdir iteration*
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :      0.91 sec.
    Max Memory :         3 MB
    Max Swap   :        39 MB

    Max Processes  :         1
    Max Threads    :         1

The output (if any) follows:

starting
ls: iteration*/exited: No such file or directory
ls: exited: No such file or directory
Running scatter-gather-iterator with the following args: /xchip/tcga/gdac_prod/source/analysis_pipeline/scripts/scatter-gather-iterator.py /xchip/tcga/gdac_prod/source/analysis_pipeline/scripts/iterative-scatter-gather.py --job-suffix 179984 --priority 65 cga /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/scatter-gather.xml /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
Finished in 1 iterations
*** Scatter Gather stdandard out:
Sender: LSF System <lsf@node1547>
Subject: Job 9878402: <gather_179984> Done

Job <gather_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1547>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1> was used as the working directory.
Started at Sat Oct  6 04:45:45 2012
Results reported at Sat Oct  6 05:00:03 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
ls scatter.*/exited 2>&1
return_code=$?
if [ ${return_code} -eq 0 ]; then
echo some scatter jobs failed;
echo ${return_code} > exited;
exit 1;
fi
if [ `ls -1 scatter.*/success | wc -l` -ne 200 ]; then
echo expected result files missing, try rerunning;
echo 1 > exited;
exit 1;
fi
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 0  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
echo gather failed;
echo ${return_code} > exited;
exit ${return_code};
fi
rm -f prepareResults.out
echo '*** Prepare stdandard out:' 2>&1
cat prepare.out 2>&1
rm -f prepare.out 2>&1
echo '*** Prepare stdandard err:' 2>&1
cat prepare.err 2>&1
rm -f prepare.err 2>&1
echo '*** Scatter stdandard out:' 2>&1
cat scatter.*/scatter.out 2>&1
rm -f scatter.*/scatter.out 2>&1
echo '*** Scatter stdandard err:' 2>&1
cat scatter.*/scatter.err 2>&1
rm -f scatter.*/scatter.err 2>&1
echo '*** Scatter retry log:'
head scatter.*.tries
echo
rm -f scatter.*.tries
rm -f scatter.*/success
rm -f scatter.*/java.opts
rmdir scatter.*
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    836.77 sec.
    Max Memory :      3926 MB
    Max Swap   :      4878 MB

    Max Processes  :         9
    Max Threads    :        72

The output (if any) follows:

ls: scatter.*/exited: No such file or directory
fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
0
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 0
                            is_scatter: 0
                             is_gather: 1

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Saved ./PRAD.mutation_filtering_report.txt
Writing coverage to ./PRAD.per_exon.coverage.txt
HUGE STRUCT: SAVING CHUNK 1/2
  [save_struct] 18/93 19/93 20/93 21/93 22/93 23/93 24/93 25/93 26/93 27/93 28/93 29/93 30/93 31/93 32/93 33/93 34/93 35/93 36/93 37/93 38/93 39/93 40/93 41/93 42/93 43/93 44/93 45/93 46/93 47/93 48/93 49/93 50/93 51/93 52/93 53/93 54/93 55/93 56/93 57/93 58/93 59/93 60/93 61/93 62/93 63/93 64/93 65/93 66/93 67/93 68/93 69/93 70/93 71/93 72/93 73/93 74/93 75/93 76/93 77/93 78/93 79/93 80/93 81/93 82/93 83/93 84/93 85/93 86/93 87/93 88/93 89/93 90/93 91/93 92/93 93/93  [collapse]
HUGE STRUCT: SAVING CHUNK 2/2
  [save_struct] 24/93 25/93 26/93 27/93 28/93 29/93 30/93 31/93 32/93 33/93 34/93 35/93 36/93 37/93 38/93 39/93 40/93 41/93 42/93 43/93 44/93 45/93 46/93 47/93 48/93 49/93 50/93 51/93 52/93 53/93 54/93 55/93 56/93 57/93 58/93 59/93 60/93 61/93 62/93 63/93 64/93 65/93 66/93 67/93 68/93 69/93 70/93 71/93 72/93 73/93 74/93 75/93 76/93 77/93 78/93 79/93 80/93 81/93 82/93 83/93 84/93 85/93 86/93 87/93 88/93 89/93 90/93 91/93 92/93 93/93  [collapse]
Outputting gene_sample_coverage_table: ./PRAD.per_gene.coverage.txt
Outputting gene_sample_mutation_counts_table: ./PRAD.per_gene.mutation_counts.txt
Mutation breakdown by type

           Frame_Shift_Del: [150]
           Frame_Shift_Ins: [77]
              In_Frame_Del: [51]
              In_Frame_Ins: [13]
         Missense_Mutation: [3284]
         Nonsense_Mutation: [183]
          Nonstop_Mutation: [2]
                    Silent: [1484]
               Splice_Site: [102]
    Translation_Start_Site: [13]
                 ----TOTAL: [5359]
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Gather job: collecting partial results

Running MutSig 2:
Gather job: collecting partial results
Outputting significance table: ./PRAD.sig_genes.txt
Done
Mapping 640 genesets from /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt to list of project genes.
100/640 200/640 300/640 400/640 500/640 600/640 
Total of 616 genesets contain at least one project gene.
Finding number of unique sites, unique patients: 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients
Analyzing silent/nonsilent ratios
Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Calculating significance of each gene.
Using projection method.
In gene ACE2PATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 38680   n = 1	mu =   9.08e-07
In gene AMINOSUGARS_METABOLISM the following bins exceed PROBCAP:
    PRAD-CH-5745	categ 6	N = 25550   n = 1	mu =   1.32e-07
    PRAD-CH-5766	categ 6	N = 25562   n = 1	mu =   6.58e-08
In gene ANDROGEN_AND_ESTROGEN_METABOLISM the following bins exceed PROBCAP:
    PRAD-EJ-5496	categ 6	N = 41478   n = 1	mu =   1.66e-07
In gene CALCINEURIN_NF_AT_SIGNALING the following bins exceed PROBCAP:
    PRAD-EJ-5499	categ 6	N = 137119  n = 1	mu =   9.97e-08
In gene CDK5PATHWAY the following bins exceed PROBCAP:
    PRAD-G9-6494	categ 6	N = 12355   n = 1	mu =   2.35e-07
In gene CITRATE_CYCLE_TCA_CYCLE the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 30605   n = 1	mu =   9.08e-07
In gene ECMPATHWAY the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 56122   n = 1	mu =   6.75e-07
In gene EIF4PATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5792	categ 6	N = 42119   n = 1	mu =   2.67e-07
In gene ERKPATHWAY the following bins exceed PROBCAP:
    PRAD-G9-6494	categ 6	N = 49478   n = 1	mu =   2.35e-07
In gene ETCPATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5772	categ 6	N = 9996    n = 1	mu =   3.94e-07
In gene GALACTOSE_METABOLISM the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 48708   n = 1	mu =   6.75e-07
In gene GATA3PATHWAY the following bins exceed PROBCAP:
    PRAD-EJ-5499	categ 6	N = 18295   n = 1	mu =   9.97e-08
In gene GHPATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5792	categ 6	N = 49521   n = 1	mu =   2.67e-07
In gene GLOBOSIDE_METABOLISM the following bins exceed PROBCAP:
    PRAD-CH-5766	categ 6	N = 15372   n = 1	mu =   6.58e-08
In gene GLYCEROLIPID_METABOLISM the following bins exceed PROBCAP:
    PRAD-EJ-5511	categ 6	N = 72778   n = 1	mu =   2.34e-07
In gene GLYCEROPHOSPHOLIPID_METABOLISM the following bins exceed PROBCAP:
    PRAD-EJ-5511	categ 6	N = 75087   n = 1	mu =   2.34e-07
In gene GLYCOSAMINOGLYCAN_DEGRADATION the following bins exceed PROBCAP:
    PRAD-CH-5766	categ 6	N = 22010   n = 1	mu =   6.58e-08
In gene GLYCOSPHINGOLIPID_METABOLISM the following bins exceed PROBCAP:
    PRAD-CH-5772	categ 6	N = 37315   n = 1	mu =   3.94e-07
In gene HSA00020_CITRATE_CYCLE the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 44507   n = 1	mu =   9.08e-07
In gene HSA00040_PENTOSE_AND_GLUCURONATE_INTERCONVERSIONS the following bins exceed PROBCAP:
    PRAD-CH-5772	categ 6	N = 41362   n = 1	mu =   3.94e-07
In gene HSA00150_ANDROGEN_AND_ESTROGEN_METABOLISM the following bins exceed PROBCAP:
    PRAD-CH-5772	categ 6	N = 76598   n = 1	mu =   3.94e-07
    PRAD-EJ-5496	categ 6	N = 76503   n = 1	mu =   1.66e-07
In gene HSA00190_OXIDATIVE_PHOSPHORYLATION the following bins exceed PROBCAP:
    PRAD-CH-5772	categ 6	N = 85183   n = 1	mu =   3.94e-07
In gene HSA00240_PYRIMIDINE_METABOLISM the following bins exceed PROBCAP:
    PRAD-CH-5765	categ 6	N = 122817  n = 1	mu =   3.34e-07
    PRAD-CH-5788	categ 6	N = 122442  n = 1	mu =   2.66e-07
In gene HSA00251_GLUTAMATE_METABOLISM the following bins exceed PROBCAP:
    PRAD-EJ-5510	categ 6	N = 59389   n = 1	mu =   1.34e-07
In gene HSA00350_TYROSINE_METABOLISM the following bins exceed PROBCAP:
    PRAD-CH-5765	categ 6	N = 89380   n = 1	mu =   3.34e-07
    PRAD-EJ-5508	categ 6	N = 89811   n = 1	mu =   2.32e-07
In gene HSA00360_PHENYLALANINE_METABOLISM the following bins exceed PROBCAP:
    PRAD-CH-5765	categ 6	N = 51399   n = 1	mu =   3.34e-07
    PRAD-EJ-5508	categ 6	N = 51545   n = 1	mu =   2.32e-07
In gene HSA00510_N_GLYCAN_BIOSYNTHESIS the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 63400   n = 1	mu =   6.75e-07
In gene HSA00511_N_GLYCAN_DEGRADATION the following bins exceed PROBCAP:
    PRAD-CH-5766	categ 6	N = 31367   n = 1	mu =   6.58e-08
    PRAD-CH-5772	categ 6	N = 31366   n = 1	mu =   3.94e-07
In gene HSA00512_O_GLYCAN_BIOSYNTHESIS the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 48210   n = 1	mu =   9.08e-07
In gene HSA00530_AMINOSUGARS_METABOLISM the following bins exceed PROBCAP:
    PRAD-CH-5745	categ 6	N = 43374   n = 1	mu =   1.32e-07
    PRAD-CH-5766	categ 6	N = 43472   n = 1	mu =   6.58e-08
    PRAD-EJ-5510	categ 6	N = 42924   n = 1	mu =   1.34e-07
In gene HSA00531_GLYCOSAMINOGLYCAN_DEGRADATION the following bins exceed PROBCAP:
    PRAD-CH-5766	categ 6	N = 31352   n = 1	mu =   6.58e-08
In gene HSA00561_GLYCEROLIPID_METABOLISM the following bins exceed PROBCAP:
    PRAD-EJ-5511	categ 6	N = 88553   n = 1	mu =   2.34e-07
    PRAD-EJ-5512	categ 6	N = 89388   n = 1	mu =   1.66e-07
In gene HSA00564_GLYCEROPHOSPHOLIPID_METABOLISM the following bins exceed PROBCAP:
    PRAD-CH-5765	categ 6	N = 99103   n = 1	mu =   3.34e-07
    PRAD-EJ-5508	categ 6	N = 99700   n = 1	mu =   2.32e-07
    PRAD-EJ-5511	categ 6	N = 98776   n = 1	mu =   2.34e-07
In gene HSA00600_SPHINGOLIPID_METABOLISM the following bins exceed PROBCAP:
    PRAD-CH-5772	categ 6	N = 55168   n = 1	mu =   3.94e-07
In gene HSA00603_GLYCOSPHINGOLIPID_BIOSYNTHESIS_GLOBOSERIES the following bins exceed PROBCAP:
    PRAD-CH-5766	categ 6	N = 16299   n = 1	mu =   6.58e-08
In gene HSA00604_GLYCOSPHINGOLIPID_BIOSYNTHESIS_GANGLIOSERIES the following bins exceed PROBCAP:
    PRAD-CH-5766	categ 6	N = 24903   n = 1	mu =   6.58e-08
In gene HSA00624_1_AND_2_METHYLNAPHTHALENE_DEGRADATION the following bins exceed PROBCAP:
    PRAD-CH-5765	categ 6	N = 37457   n = 1	mu =   3.34e-07
    PRAD-EJ-5508	categ 6	N = 37645   n = 1	mu =   2.32e-07
In gene HSA00632_BENZOATE_DEGRADATION_VIA_COA_LIGATION the following bins exceed PROBCAP:
    PRAD-CH-5765	categ 6	N = 38887   n = 1	mu =   3.34e-07
    PRAD-EJ-5508	categ 6	N = 38976   n = 1	mu =   2.32e-07
In gene HSA00642_ETHYLBENZENE_DEGRADATION the following bins exceed PROBCAP:
    PRAD-CH-5765	categ 6	N = 24804   n = 1	mu =   3.34e-07
    PRAD-EJ-5508	categ 6	N = 24918   n = 1	mu =   2.32e-07
In gene HSA00860_PORPHYRIN_AND_CHLOROPHYLL_METABOLISM the following bins exceed PROBCAP:
    PRAD-CH-5772	categ 6	N = 64004   n = 1	mu =   3.94e-07
In gene HSA00903_LIMONENE_AND_PINENE_DEGRADATION the following bins exceed PROBCAP:
    PRAD-CH-5765	categ 6	N = 46331   n = 1	mu =   3.34e-07
    PRAD-EJ-5508	categ 6	N = 46473   n = 1	mu =   2.32e-07
In gene HSA00920_SULFUR_METABOLISM the following bins exceed PROBCAP:
    PRAD-EJ-5496	categ 6	N = 14268   n = 1	mu =   1.66e-07
In gene HSA00960_ALKALOID_BIOSYNTHESIS_II the following bins exceed PROBCAP:
    PRAD-CH-5765	categ 6	N = 38144   n = 1	mu =   3.34e-07
    PRAD-EJ-5508	categ 6	N = 38420   n = 1	mu =   2.32e-07
In gene HSA00980_METABOLISM_OF_XENOBIOTICS_BY_CYTOCHROME_P450 the following bins exceed PROBCAP:
    PRAD-CH-5772	categ 6	N = 87623   n = 1	mu =   3.94e-07
In gene HSA01030_GLYCAN_STRUCTURES_BIOSYNTHESIS_1 the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 164505  n = 1	mu =   9.08e-07
    PRAD-EJ-5519	categ 6	N = 163944  n = 1	mu =   6.75e-07
In gene HSA01032_GLYCAN_STRUCTURES_DEGRADATION the following bins exceed PROBCAP:
    PRAD-CH-5766	categ 6	N = 53181   n = 1	mu =   6.58e-08
    PRAD-CH-5772	categ 6	N = 53439   n = 1	mu =   3.94e-07
In gene HSA03030_DNA_POLYMERASE the following bins exceed PROBCAP:
    PRAD-CH-5788	categ 6	N = 61876   n = 1	mu =   2.66e-07
In gene HSA03060_PROTEIN_EXPORT the following bins exceed PROBCAP:
    PRAD-G9-6367	categ 6	N = 11290   n = 1	mu =   6.65e-08
In gene HSA04070_PHOSPHATIDYLINOSITOL_SIGNALING_SYSTEM the following bins exceed PROBCAP:
    PRAD-EJ-5511	categ 6	N = 188420  n = 1	mu =   2.34e-07
In gene HSA04115_P53_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5788	categ 6	N = 99343   n = 1	mu =   2.66e-07
In gene HSA04140_REGULATION_OF_AUTOPHAGY the following bins exceed PROBCAP:
    PRAD-EJ-5512	categ 6	N = 32268   n = 1	mu =   1.66e-07
In gene HSA04320_DORSO_VENTRAL_AXIS_FORMATION the following bins exceed PROBCAP:
    PRAD-EJ-5502	categ 6	N = 78311   n = 1	mu =   6.71e-08
In gene HSA04330_NOTCH_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5761	categ 6	N = 107073  n = 1	mu =   2.99e-07
In gene HSA04340_HEDGEHOG_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    PRAD-EJ-5542	categ 6	N = 92932   n = 1	mu =   1.32e-07
In gene HSA04350_TGF_BETA_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5789	categ 6	N = 150495  n = 1	mu =   1.98e-07
    PRAD-EJ-5519	categ 6	N = 147558  n = 1	mu =   6.75e-07
In gene HSA04360_AXON_GUIDANCE the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 294122  n = 1	mu =   6.75e-07
In gene HSA04370_VEGF_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5788	categ 6	N = 109158  n = 1	mu =   2.66e-07
In gene HSA04520_ADHERENS_JUNCTION the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 178691  n = 1	mu =   9.08e-07
    PRAD-EJ-5510	categ 6	N = 179757  n = 1	mu =   1.34e-07
In gene HSA04530_TIGHT_JUNCTION the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 290721  n = 1	mu =   9.08e-07
    PRAD-EJ-5505	categ 6	N = 293902  n = 1	mu =   1.33e-07
In gene HSA04910_INSULIN_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5789	categ 6	N = 244985  n = 1	mu =   1.98e-07
    PRAD-CH-5792	categ 6	N = 242573  n = 1	mu =   2.67e-07
In gene HSA04920_ADIPOCYTOKINE_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5792	categ 6	N = 125654  n = 1	mu =   2.67e-07
In gene HSA05130_PATHOGENIC_ESCHERICHIA_COLI_INFECTION_EHEC the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 78233   n = 1	mu =   6.75e-07
In gene HSA05131_PATHOGENIC_ESCHERICHIA_COLI_INFECTION_EPEC the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 78233   n = 1	mu =   6.75e-07
In gene HSP27PATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5788	categ 6	N = 17017   n = 1	mu =   2.66e-07
In gene IGF1PATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5792	categ 6	N = 37244   n = 1	mu =   2.67e-07
In gene IGF1RPATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5792	categ 6	N = 28384   n = 1	mu =   2.67e-07
In gene IL12PATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5765	categ 6	N = 28037   n = 1	mu =   3.34e-07
In gene IL2RBPATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5792	categ 6	N = 54465   n = 1	mu =   2.67e-07
In gene IL4PATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5792	categ 6	N = 22447   n = 1	mu =   2.67e-07
In gene INSULINPATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5792	categ 6	N = 38319   n = 1	mu =   2.67e-07
In gene INTEGRINPATHWAY the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 69999   n = 1	mu =   6.75e-07
In gene INTRINSICPATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 67472   n = 1	mu =   9.08e-07
In gene KREBS_TCA_CYCLE the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 42181   n = 1	mu =   9.08e-07
In gene MAPKPATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5788	categ 6	N = 144748  n = 1	mu =   2.66e-07
In gene MRNA_PROCESSING_REACTOME the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 158615  n = 1	mu =   9.08e-07
    PRAD-CH-5789	categ 6	N = 159991  n = 1	mu =   1.98e-07
    PRAD-CH-5792	categ 6	N = 159196  n = 1	mu =   2.67e-07
In gene MYOSINPATHWAY the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 30807   n = 1	mu =   6.75e-07
In gene N_GLYCAN_DEGRADATION the following bins exceed PROBCAP:
    PRAD-CH-5766	categ 6	N = 25516   n = 1	mu =   6.58e-08
    PRAD-CH-5772	categ 6	N = 25469   n = 1	mu =   3.94e-07
In gene NGFPATHWAY the following bins exceed PROBCAP:
    PRAD-G9-6494	categ 6	N = 28369   n = 1	mu =   2.35e-07
In gene NO2IL12PATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5765	categ 6	N = 22167   n = 1	mu =   3.34e-07
In gene O_GLYCAN_BIOSYNTHESIS the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 21581   n = 1	mu =   9.08e-07
In gene OVARIAN_INFERTILITY_GENES the following bins exceed PROBCAP:
    PRAD-CH-5792	categ 6	N = 52742   n = 1	mu =   2.67e-07
In gene PAR1PATHWAY the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 38632   n = 1	mu =   6.75e-07
In gene PEPTIDE_GPCRS the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 77556   n = 1	mu =   9.08e-07
    PRAD-CH-5792	categ 6	N = 78708   n = 1	mu =   2.67e-07
In gene PHOSPHATIDYLINOSITOL_SIGNALING_SYSTEM the following bins exceed PROBCAP:
    PRAD-EJ-5511	categ 6	N = 170513  n = 1	mu =   2.34e-07
468	PLK3PATHWAY	5.256855e-05
In gene RHOPATHWAY the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 67879   n = 1	mu =   6.75e-07
510	SA_G1_AND_S_PHASES	6.348586e-06
In gene SIG_CHEMOTAXIS the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 105339  n = 1	mu =   6.75e-07
In gene SIG_IL4RECEPTOR_IN_B_LYPHOCYTES the following bins exceed PROBCAP:
    PRAD-CH-5792	categ 6	N = 55237   n = 1	mu =   2.67e-07
In gene SIG_INSULIN_RECEPTOR_PATHWAY_IN_CARDIAC_MYOCYTES the following bins exceed PROBCAP:
    PRAD-CH-5792	categ 6	N = 89508   n = 1	mu =   2.67e-07
In gene SIG_PIP3_SIGNALING_IN_CARDIAC_MYOCTES the following bins exceed PROBCAP:
    PRAD-CH-5792	categ 6	N = 116895  n = 1	mu =   2.67e-07
In gene SIG_REGULATION_OF_THE_ACTIN_CYTOSKELETON_BY_RHO_GTPASES the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 70979   n = 1	mu =   6.75e-07
In gene SPRYPATHWAY the following bins exceed PROBCAP:
    PRAD-EJ-5510	categ 6	N = 37462   n = 1	mu =   1.34e-07
In gene ST_FAS_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 109663  n = 1	mu =   6.75e-07
    PRAD-G9-6494	categ 6	N = 110872  n = 1	mu =   2.35e-07
In gene ST_GA13_PATHWAY the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 73581   n = 1	mu =   6.75e-07
In gene ST_INTEGRIN_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 183903  n = 1	mu =   6.75e-07
In gene STARCH_AND_SUCROSE_METABOLISM the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 86057   n = 1	mu =   6.75e-07
In gene STRIATED_MUSCLE_CONTRACTION the following bins exceed PROBCAP:
    PRAD-EJ-5511	categ 6	N = 207668  n = 1	mu =   2.34e-07
In gene SULFUR_METABOLISM the following bins exceed PROBCAP:
    PRAD-EJ-5496	categ 6	N = 9135    n = 1	mu =   1.66e-07
In gene TRKAPATHWAY the following bins exceed PROBCAP:
    PRAD-G9-6494	categ 6	N = 23376   n = 1	mu =   2.35e-07
In gene VITCBPATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 38433   n = 1	mu =   9.08e-07
In gene WNT_SIGNALING the following bins exceed PROBCAP:
    PRAD-CH-5761	categ 6	N = 91000   n = 1	mu =   2.99e-07
    PRAD-EJ-5511	categ 6	N = 90117   n = 1	mu =   2.34e-07
    PRAD-EJ-5542	categ 6	N = 91463   n = 1	mu =   1.32e-07
Done
Outputting significance table: ./PRAD.sig_genesets.txt
Done
Mapping 640 genesets from /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt to list of project genes.
100/640 200/640 300/640 400/640 500/640 600/640 
Total of 616 genesets contain at least one project gene.
Finding number of unique sites, unique patients: 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients
Analyzing silent/nonsilent ratios
Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Calculating significance of each gene.
Using projection method.
In gene ACE2PATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 37206   n = 1	mu =   9.08e-07
In gene AMINOSUGARS_METABOLISM the following bins exceed PROBCAP:
    PRAD-CH-5745	categ 6	N = 25550   n = 1	mu =   1.32e-07
    PRAD-CH-5766	categ 6	N = 25562   n = 1	mu =   6.58e-08
In gene ANDROGEN_AND_ESTROGEN_METABOLISM the following bins exceed PROBCAP:
    PRAD-EJ-5496	categ 6	N = 41478   n = 1	mu =   1.66e-07
In gene CALCINEURIN_NF_AT_SIGNALING the following bins exceed PROBCAP:
    PRAD-EJ-5499	categ 6	N = 137119  n = 1	mu =   9.97e-08
In gene CDK5PATHWAY the following bins exceed PROBCAP:
    PRAD-G9-6494	categ 6	N = 12355   n = 1	mu =   2.35e-07
In gene CITRATE_CYCLE_TCA_CYCLE the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 30605   n = 1	mu =   9.08e-07
In gene ECMPATHWAY the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 56122   n = 1	mu =   6.75e-07
In gene EIF4PATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5792	categ 6	N = 42119   n = 1	mu =   2.67e-07
In gene ERKPATHWAY the following bins exceed PROBCAP:
    PRAD-G9-6494	categ 6	N = 49478   n = 1	mu =   2.35e-07
In gene ETCPATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5772	categ 6	N = 9996    n = 1	mu =   3.94e-07
In gene GALACTOSE_METABOLISM the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 48708   n = 1	mu =   6.75e-07
In gene GATA3PATHWAY the following bins exceed PROBCAP:
    PRAD-EJ-5499	categ 6	N = 18295   n = 1	mu =   9.97e-08
In gene GHPATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5792	categ 6	N = 49521   n = 1	mu =   2.67e-07
In gene GLOBOSIDE_METABOLISM the following bins exceed PROBCAP:
    PRAD-CH-5766	categ 6	N = 15372   n = 1	mu =   6.58e-08
In gene GLYCEROLIPID_METABOLISM the following bins exceed PROBCAP:
    PRAD-EJ-5511	categ 6	N = 72778   n = 1	mu =   2.34e-07
In gene GLYCEROPHOSPHOLIPID_METABOLISM the following bins exceed PROBCAP:
    PRAD-EJ-5511	categ 6	N = 75087   n = 1	mu =   2.34e-07
In gene GLYCOSAMINOGLYCAN_DEGRADATION the following bins exceed PROBCAP:
    PRAD-CH-5766	categ 6	N = 22010   n = 1	mu =   6.58e-08
In gene GLYCOSPHINGOLIPID_METABOLISM the following bins exceed PROBCAP:
    PRAD-CH-5772	categ 6	N = 37315   n = 1	mu =   3.94e-07
In gene HSA00020_CITRATE_CYCLE the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 44507   n = 1	mu =   9.08e-07
In gene HSA00040_PENTOSE_AND_GLUCURONATE_INTERCONVERSIONS the following bins exceed PROBCAP:
    PRAD-CH-5772	categ 6	N = 41362   n = 1	mu =   3.94e-07
In gene HSA00150_ANDROGEN_AND_ESTROGEN_METABOLISM the following bins exceed PROBCAP:
    PRAD-CH-5772	categ 6	N = 76598   n = 1	mu =   3.94e-07
    PRAD-EJ-5496	categ 6	N = 76503   n = 1	mu =   1.66e-07
In gene HSA00190_OXIDATIVE_PHOSPHORYLATION the following bins exceed PROBCAP:
    PRAD-CH-5772	categ 6	N = 84635   n = 1	mu =   3.94e-07
In gene HSA00240_PYRIMIDINE_METABOLISM the following bins exceed PROBCAP:
    PRAD-CH-5765	categ 6	N = 121302  n = 1	mu =   3.34e-07
In gene HSA00251_GLUTAMATE_METABOLISM the following bins exceed PROBCAP:
    PRAD-EJ-5510	categ 6	N = 59389   n = 1	mu =   1.34e-07
In gene HSA00350_TYROSINE_METABOLISM the following bins exceed PROBCAP:
    PRAD-CH-5765	categ 6	N = 89380   n = 1	mu =   3.34e-07
    PRAD-EJ-5508	categ 6	N = 89811   n = 1	mu =   2.32e-07
In gene HSA00360_PHENYLALANINE_METABOLISM the following bins exceed PROBCAP:
    PRAD-CH-5765	categ 6	N = 51399   n = 1	mu =   3.34e-07
    PRAD-EJ-5508	categ 6	N = 51545   n = 1	mu =   2.32e-07
In gene HSA00510_N_GLYCAN_BIOSYNTHESIS the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 63400   n = 1	mu =   6.75e-07
In gene HSA00511_N_GLYCAN_DEGRADATION the following bins exceed PROBCAP:
    PRAD-CH-5766	categ 6	N = 31367   n = 1	mu =   6.58e-08
    PRAD-CH-5772	categ 6	N = 31366   n = 1	mu =   3.94e-07
In gene HSA00512_O_GLYCAN_BIOSYNTHESIS the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 48210   n = 1	mu =   9.08e-07
In gene HSA00530_AMINOSUGARS_METABOLISM the following bins exceed PROBCAP:
    PRAD-CH-5745	categ 6	N = 43374   n = 1	mu =   1.32e-07
    PRAD-CH-5766	categ 6	N = 43472   n = 1	mu =   6.58e-08
    PRAD-EJ-5510	categ 6	N = 42924   n = 1	mu =   1.34e-07
In gene HSA00531_GLYCOSAMINOGLYCAN_DEGRADATION the following bins exceed PROBCAP:
    PRAD-CH-5766	categ 6	N = 31352   n = 1	mu =   6.58e-08
In gene HSA00561_GLYCEROLIPID_METABOLISM the following bins exceed PROBCAP:
    PRAD-EJ-5511	categ 6	N = 88553   n = 1	mu =   2.34e-07
    PRAD-EJ-5512	categ 6	N = 89388   n = 1	mu =   1.66e-07
In gene HSA00564_GLYCEROPHOSPHOLIPID_METABOLISM the following bins exceed PROBCAP:
    PRAD-CH-5765	categ 6	N = 99103   n = 1	mu =   3.34e-07
    PRAD-EJ-5508	categ 6	N = 99700   n = 1	mu =   2.32e-07
    PRAD-EJ-5511	categ 6	N = 98776   n = 1	mu =   2.34e-07
In gene HSA00600_SPHINGOLIPID_METABOLISM the following bins exceed PROBCAP:
    PRAD-CH-5772	categ 6	N = 55168   n = 1	mu =   3.94e-07
In gene HSA00603_GLYCOSPHINGOLIPID_BIOSYNTHESIS_GLOBOSERIES the following bins exceed PROBCAP:
    PRAD-CH-5766	categ 6	N = 16299   n = 1	mu =   6.58e-08
In gene HSA00604_GLYCOSPHINGOLIPID_BIOSYNTHESIS_GANGLIOSERIES the following bins exceed PROBCAP:
    PRAD-CH-5766	categ 6	N = 24903   n = 1	mu =   6.58e-08
In gene HSA00624_1_AND_2_METHYLNAPHTHALENE_DEGRADATION the following bins exceed PROBCAP:
    PRAD-CH-5765	categ 6	N = 37457   n = 1	mu =   3.34e-07
    PRAD-EJ-5508	categ 6	N = 37645   n = 1	mu =   2.32e-07
In gene HSA00632_BENZOATE_DEGRADATION_VIA_COA_LIGATION the following bins exceed PROBCAP:
    PRAD-CH-5765	categ 6	N = 38887   n = 1	mu =   3.34e-07
    PRAD-EJ-5508	categ 6	N = 38976   n = 1	mu =   2.32e-07
In gene HSA00642_ETHYLBENZENE_DEGRADATION the following bins exceed PROBCAP:
    PRAD-CH-5765	categ 6	N = 24804   n = 1	mu =   3.34e-07
    PRAD-EJ-5508	categ 6	N = 24918   n = 1	mu =   2.32e-07
In gene HSA00860_PORPHYRIN_AND_CHLOROPHYLL_METABOLISM the following bins exceed PROBCAP:
    PRAD-CH-5772	categ 6	N = 64004   n = 1	mu =   3.94e-07
In gene HSA00903_LIMONENE_AND_PINENE_DEGRADATION the following bins exceed PROBCAP:
    PRAD-CH-5765	categ 6	N = 46331   n = 1	mu =   3.34e-07
    PRAD-EJ-5508	categ 6	N = 46473   n = 1	mu =   2.32e-07
In gene HSA00920_SULFUR_METABOLISM the following bins exceed PROBCAP:
    PRAD-EJ-5496	categ 6	N = 14268   n = 1	mu =   1.66e-07
In gene HSA00960_ALKALOID_BIOSYNTHESIS_II the following bins exceed PROBCAP:
    PRAD-CH-5765	categ 6	N = 38144   n = 1	mu =   3.34e-07
    PRAD-EJ-5508	categ 6	N = 38420   n = 1	mu =   2.32e-07
In gene HSA00980_METABOLISM_OF_XENOBIOTICS_BY_CYTOCHROME_P450 the following bins exceed PROBCAP:
    PRAD-CH-5772	categ 6	N = 87623   n = 1	mu =   3.94e-07
In gene HSA01030_GLYCAN_STRUCTURES_BIOSYNTHESIS_1 the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 164505  n = 1	mu =   9.08e-07
    PRAD-EJ-5519	categ 6	N = 163944  n = 1	mu =   6.75e-07
In gene HSA01032_GLYCAN_STRUCTURES_DEGRADATION the following bins exceed PROBCAP:
    PRAD-CH-5766	categ 6	N = 53181   n = 1	mu =   6.58e-08
    PRAD-CH-5772	categ 6	N = 53439   n = 1	mu =   3.94e-07
In gene HSA03060_PROTEIN_EXPORT the following bins exceed PROBCAP:
    PRAD-G9-6367	categ 6	N = 11290   n = 1	mu =   6.65e-08
In gene HSA04070_PHOSPHATIDYLINOSITOL_SIGNALING_SYSTEM the following bins exceed PROBCAP:
    PRAD-EJ-5511	categ 6	N = 188420  n = 1	mu =   2.34e-07
In gene HSA04115_P53_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5788	categ 6	N = 96351   n = 1	mu =   2.66e-07
In gene HSA04140_REGULATION_OF_AUTOPHAGY the following bins exceed PROBCAP:
    PRAD-EJ-5512	categ 6	N = 32268   n = 1	mu =   1.66e-07
In gene HSA04320_DORSO_VENTRAL_AXIS_FORMATION the following bins exceed PROBCAP:
    PRAD-EJ-5502	categ 6	N = 78311   n = 1	mu =   6.71e-08
In gene HSA04330_NOTCH_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5761	categ 6	N = 107073  n = 1	mu =   2.99e-07
In gene HSA04340_HEDGEHOG_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    PRAD-EJ-5542	categ 6	N = 92216   n = 1	mu =   1.32e-07
In gene HSA04350_TGF_BETA_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5789	categ 6	N = 150495  n = 1	mu =   1.98e-07
    PRAD-EJ-5519	categ 6	N = 147558  n = 1	mu =   6.75e-07
In gene HSA04360_AXON_GUIDANCE the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 294122  n = 1	mu =   6.75e-07
In gene HSA04370_VEGF_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5788	categ 6	N = 109158  n = 1	mu =   2.66e-07
In gene HSA04520_ADHERENS_JUNCTION the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 172222  n = 1	mu =   9.08e-07
    PRAD-EJ-5510	categ 6	N = 173288  n = 1	mu =   1.34e-07
In gene HSA04530_TIGHT_JUNCTION the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 288319  n = 1	mu =   9.08e-07
    PRAD-EJ-5505	categ 6	N = 291500  n = 1	mu =   1.33e-07
In gene HSA04910_INSULIN_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5789	categ 6	N = 240918  n = 1	mu =   1.98e-07
    PRAD-CH-5792	categ 6	N = 238506  n = 1	mu =   2.67e-07
In gene HSA04920_ADIPOCYTOKINE_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5792	categ 6	N = 125654  n = 1	mu =   2.67e-07
In gene HSA05130_PATHOGENIC_ESCHERICHIA_COLI_INFECTION_EHEC the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 75831   n = 1	mu =   6.75e-07
In gene HSA05131_PATHOGENIC_ESCHERICHIA_COLI_INFECTION_EPEC the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 75831   n = 1	mu =   6.75e-07
In gene HSP27PATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5788	categ 6	N = 17017   n = 1	mu =   2.66e-07
In gene IGF1PATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5792	categ 6	N = 37244   n = 1	mu =   2.67e-07
In gene IGF1RPATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5792	categ 6	N = 28384   n = 1	mu =   2.67e-07
In gene IL12PATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5765	categ 6	N = 28037   n = 1	mu =   3.34e-07
In gene IL2RBPATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5792	categ 6	N = 54465   n = 1	mu =   2.67e-07
In gene IL4PATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5792	categ 6	N = 22447   n = 1	mu =   2.67e-07
In gene INSULINPATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5792	categ 6	N = 38319   n = 1	mu =   2.67e-07
In gene INTEGRINPATHWAY the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 69999   n = 1	mu =   6.75e-07
In gene INTRINSICPATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 67472   n = 1	mu =   9.08e-07
In gene KREBS_TCA_CYCLE the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 42181   n = 1	mu =   9.08e-07
In gene MAPKPATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5788	categ 6	N = 144748  n = 1	mu =   2.66e-07
In gene MRNA_PROCESSING_REACTOME the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 157454  n = 1	mu =   9.08e-07
    PRAD-CH-5789	categ 6	N = 158830  n = 1	mu =   1.98e-07
    PRAD-CH-5792	categ 6	N = 158035  n = 1	mu =   2.67e-07
In gene MYOSINPATHWAY the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 30807   n = 1	mu =   6.75e-07
In gene N_GLYCAN_DEGRADATION the following bins exceed PROBCAP:
    PRAD-CH-5766	categ 6	N = 25516   n = 1	mu =   6.58e-08
    PRAD-CH-5772	categ 6	N = 25469   n = 1	mu =   3.94e-07
In gene NGFPATHWAY the following bins exceed PROBCAP:
    PRAD-G9-6494	categ 6	N = 28369   n = 1	mu =   2.35e-07
In gene NO2IL12PATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5765	categ 6	N = 22167   n = 1	mu =   3.34e-07
In gene O_GLYCAN_BIOSYNTHESIS the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 21581   n = 1	mu =   9.08e-07
In gene OVARIAN_INFERTILITY_GENES the following bins exceed PROBCAP:
    PRAD-CH-5792	categ 6	N = 52742   n = 1	mu =   2.67e-07
In gene PAR1PATHWAY the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 38632   n = 1	mu =   6.75e-07
In gene PEPTIDE_GPCRS the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 77556   n = 1	mu =   9.08e-07
    PRAD-CH-5792	categ 6	N = 78708   n = 1	mu =   2.67e-07
In gene PHOSPHATIDYLINOSITOL_SIGNALING_SYSTEM the following bins exceed PROBCAP:
    PRAD-EJ-5511	categ 6	N = 170513  n = 1	mu =   2.34e-07
In gene RHOPATHWAY the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 67879   n = 1	mu =   6.75e-07
In gene SIG_CHEMOTAXIS the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 105339  n = 1	mu =   6.75e-07
In gene SIG_IL4RECEPTOR_IN_B_LYPHOCYTES the following bins exceed PROBCAP:
    PRAD-CH-5792	categ 6	N = 55237   n = 1	mu =   2.67e-07
In gene SIG_INSULIN_RECEPTOR_PATHWAY_IN_CARDIAC_MYOCYTES the following bins exceed PROBCAP:
    PRAD-CH-5792	categ 6	N = 85441   n = 1	mu =   2.67e-07
In gene SIG_PIP3_SIGNALING_IN_CARDIAC_MYOCTES the following bins exceed PROBCAP:
    PRAD-CH-5792	categ 6	N = 116895  n = 1	mu =   2.67e-07
In gene SIG_REGULATION_OF_THE_ACTIN_CYTOSKELETON_BY_RHO_GTPASES the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 70979   n = 1	mu =   6.75e-07
In gene SPRYPATHWAY the following bins exceed PROBCAP:
    PRAD-EJ-5510	categ 6	N = 37462   n = 1	mu =   1.34e-07
In gene ST_FAS_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 108420  n = 1	mu =   6.75e-07
    PRAD-G9-6494	categ 6	N = 109685  n = 1	mu =   2.35e-07
In gene ST_GA13_PATHWAY the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 73581   n = 1	mu =   6.75e-07
In gene ST_INTEGRIN_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 183903  n = 1	mu =   6.75e-07
In gene STARCH_AND_SUCROSE_METABOLISM the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 86057   n = 1	mu =   6.75e-07
In gene STRIATED_MUSCLE_CONTRACTION the following bins exceed PROBCAP:
    PRAD-EJ-5511	categ 6	N = 207668  n = 1	mu =   2.34e-07
In gene SULFUR_METABOLISM the following bins exceed PROBCAP:
    PRAD-EJ-5496	categ 6	N = 9135    n = 1	mu =   1.66e-07
In gene TRKAPATHWAY the following bins exceed PROBCAP:
    PRAD-G9-6494	categ 6	N = 23376   n = 1	mu =   2.35e-07
In gene VITCBPATHWAY the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 38433   n = 1	mu =   9.08e-07
In gene WNT_SIGNALING the following bins exceed PROBCAP:
    PRAD-CH-5761	categ 6	N = 87882   n = 1	mu =   2.99e-07
    PRAD-EJ-5511	categ 6	N = 86999   n = 1	mu =   2.34e-07
    PRAD-EJ-5542	categ 6	N = 88345   n = 1	mu =   1.32e-07
Done
Outputting significance table: ./PRAD.sig_genesets_2.txt
Done
Loaded COSMIC database from /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
WARNING: unknown chromosome(s):
    {''}

COSMIC analysis:  gene 1000/4523 2000/4523 3000/4523 4000/4523 
Loading refseq database...

Mutation coordinate error (line 485): Length of alternate bases must equal length of refence bases.
51584845	51584846	GG	GG	A
Mutation coordinate error (line 752): Length of alternate bases must equal length of refence bases.
26851603	26851604	GC	GC	A
Mutation coordinate error (line 755): Length of alternate bases must equal length of refence bases.
9071591	9071592	GG	GG	T
Mutation coordinate error (line 942): Length of alternate bases must equal length of refence bases.
33797991	33797992	GC	GC	A
Mutation coordinate error (line 1458): Length of alternate bases must equal length of refence bases.
104152773	104152775	TNG	TNG	C
Mutation coordinate error (line 1562): Length of alternate bases must equal length of refence bases.
120612013	120612014	GC	GC	A
Mutation coordinate error (line 1595): Length of alternate bases must equal length of refence bases.
74732290	74732291	TC	TC	A
Mutation coordinate error (line 1603): Length of alternate bases must equal length of refence bases.
48674947	48674948	TG	TG	G
Mutation coordinate error (line 1652): Length of alternate bases must equal length of refence bases.
126132707	126132708	CT	CT	A
Mutation coordinate error (line 1721): Length of alternate bases must equal length of refence bases.
18528456	18528457	GG	GG	T
Mutation coordinate error (line 1811): Length of alternate bases must equal length of refence bases.
152748962	152748963	CC	CC	G
Mutation coordinate error (line 2033): Length of alternate bases must equal length of refence bases.
28294582	28294583	GA	GA	T
Mutation coordinate error (line 2291): Length of alternate bases must equal length of refence bases.
32856778	32856779	GG	GG	A
Mutation coordinate error (line 2365): Length of alternate bases must equal length of refence bases.
141315346	141315347	GA	GA	T
Mutation coordinate error (line 2824): Length of alternate bases must equal length of refence bases.
35662634	35662635	GC	GC	T
Mutation coordinate error (line 2891): Length of alternate bases must equal length of refence bases.
136554944	136554945	GC	GC	T
Mutation coordinate error (line 3286): Length of alternate bases must equal length of refence bases.
131172448	131172449	TC	TC	G
Mutation coordinate error (line 3297): Length of alternate bases must equal length of refence bases.
41634587	41634588	AC	AC	G
Mutation coordinate error (line 3317): Length of alternate bases must equal length of refence bases.
151664546	151664547	GG	GG	A
Mutation coordinate error (line 3330): Length of alternate bases must equal length of refence bases.
61949662	61949663	GG	GG	C
Mutation coordinate error (line 3437): Length of alternate bases must equal length of refence bases.
29091840	29091841	TG	TG	C
Mutation coordinate error (line 3439): Length of alternate bases must equal length of refence bases.
70461110	70461111	GG	GG	C
Mutation coordinate error (line 3528): Length of alternate bases must equal length of refence bases.
39274205	39274206	TC	TC	C
Mutation coordinate error (line 3534): Length of alternate bases must equal length of refence bases.
29091840	29091841	TG	TG	C
Mutation coordinate error (line 3609): Length of alternate bases must equal length of refence bases.
39240794	39240795	CA	CA	A

Error in maflite format!  The faulty lines displayed above will not be included in output.
Ignoring the mutations listed above.
Analyzing clustered mutations
Problem with re-annotating mutations in gene A2BP1: skipping.
Problem with re-annotating mutations in gene ABCA12: skipping.
Problem with re-annotating mutations in gene ABCA4: skipping.
Problem with re-annotating mutations in gene ABCB1: skipping.
Problem with re-annotating mutations in gene ABCC11: skipping.
Problem with re-annotating mutations in gene ACAN: skipping.
Problem with re-annotating mutations in gene ACTR8: skipping.
Problem with re-annotating mutations in gene ADAM29: skipping.
Problem with re-annotating mutations in gene ADAMTS13: skipping.
Problem with re-annotating mutations in gene ADAMTS19: skipping.
Problem with re-annotating mutations in gene ADAMTS7: skipping.
Problem with re-annotating mutations in gene ADAMTSL1: skipping.
Problem with re-annotating mutations in gene ADNP: skipping.
Problem with re-annotating mutations in gene AFG3L2: skipping.
Problem with re-annotating mutations in gene AGAP6: skipping.
Problem with re-annotating mutations in gene AGT: skipping.
Problem with re-annotating mutations in gene AHNAK2: skipping.
Problem with re-annotating mutations in gene AIM2: skipping.
100/2990 Problem with re-annotating mutations in gene ALPK2: skipping.
Problem with re-annotating mutations in gene ANK2: skipping.
Problem with re-annotating mutations in gene ANK3: skipping.
Problem with re-annotating mutations in gene ANKRD36: skipping.
Problem with re-annotating mutations in gene ANKRD56: skipping.
Problem with re-annotating mutations in gene ANLN: skipping.
Problem with re-annotating mutations in gene ANO4: skipping.
Problem with re-annotating mutations in gene AP3B2: skipping.
Problem with re-annotating mutations in gene AP4B1: skipping.
Problem with re-annotating mutations in gene APOB: skipping.
Problem with re-annotating mutations in gene AQR: skipping.
Problem with re-annotating mutations in gene ARHGAP11B: skipping.
Problem with re-annotating mutations in gene ARHGAP21: skipping.
Problem with re-annotating mutations in gene ARHGAP30: skipping.
Problem with re-annotating mutations in gene ARHGAP32: skipping.
Problem with re-annotating mutations in gene ARHGEF10: skipping.
Problem with re-annotating mutations in gene ARID2: skipping.
Problem with re-annotating mutations in gene ARID4B: skipping.
Problem with re-annotating mutations in gene ARID5A: skipping.
200/2990 Problem with re-annotating mutations in gene ASB2: skipping.
Problem with re-annotating mutations in gene ASCC3: skipping.
Problem with re-annotating mutations in gene ASH1L: skipping.
Problem with re-annotating mutations in gene ASPHD2: skipping.
Problem with re-annotating mutations in gene ASTN1: skipping.
Problem with re-annotating mutations in gene ATAD2: skipping.
Problem with re-annotating mutations in gene ATF7IP: skipping.
Problem with re-annotating mutations in gene ATM: skipping.
Problem with re-annotating mutations in gene ATP10B: skipping.
Problem with re-annotating mutations in gene ATP2B4: skipping.
Problem with re-annotating mutations in gene ATP8B4: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ATRX: skipping.
Problem with re-annotating mutations in gene B3GAT3: skipping.
Problem with re-annotating mutations in gene B3GNT4: skipping.
Problem with re-annotating mutations in gene BAHCC1: skipping.
Problem with re-annotating mutations in gene BAI3: skipping.
Problem with re-annotating mutations in gene BANF2: skipping.
Problem with re-annotating mutations in gene BBS9: skipping.
Problem with re-annotating mutations in gene BCL11A: skipping.
Problem with re-annotating mutations in gene BCL6: skipping.
Problem with re-annotating mutations in gene BCMO1: skipping.
Problem with re-annotating mutations in gene BMP2K: skipping.
Problem with re-annotating mutations in gene BOD1L: skipping.
Problem with re-annotating mutations in gene BRCA2: skipping.
Problem with re-annotating mutations in gene BRDT: skipping.
Problem with re-annotating mutations in gene BSN: skipping.
Problem with re-annotating mutations in gene BTBD12: skipping.
300/2990 Problem with re-annotating mutations in gene C12orf63: skipping.
Problem with re-annotating mutations in gene C14orf166B: skipping.
Problem with re-annotating mutations in gene C17orf63: skipping.
Problem with re-annotating mutations in gene C1orf116: skipping.
Problem with re-annotating mutations in gene C1orf173: skipping.
Problem with re-annotating mutations in gene C20orf111: skipping.
Problem with re-annotating mutations in gene C20orf194: skipping.
Problem with re-annotating mutations in gene C4orf21: skipping.
Problem with re-annotating mutations in gene C7orf63: skipping.
Problem with re-annotating mutations in gene C9orf150: skipping.
400/2990 Problem with re-annotating mutations in gene CACHD1: skipping.
Problem with re-annotating mutations in gene CACNA1A: skipping.
Problem with re-annotating mutations in gene CAMTA1: skipping.
Problem with re-annotating mutations in gene CARD9: skipping.
Problem with re-annotating mutations in gene CASP1: skipping.
Problem with re-annotating mutations in gene CC2D1B: skipping.
Problem with re-annotating mutations in gene CCDC105: skipping.
Problem with re-annotating mutations in gene CCDC121: skipping.
Problem with re-annotating mutations in gene CCDC144A: skipping.
Problem with re-annotating mutations in gene CCNF: skipping.
Problem with re-annotating mutations in gene CCT8L2: skipping.
Problem with re-annotating mutations in gene CDC27: skipping.
Problem with re-annotating mutations in gene CDH18: skipping.
Problem with re-annotating mutations in gene CDH5: skipping.
Problem with re-annotating mutations in gene CDH6: skipping.
Problem with re-annotating mutations in gene CDKN1B: skipping.
Problem with re-annotating mutations in gene CEACAM6: skipping.
500/2990 Problem with re-annotating mutations in gene CELSR3: skipping.
Problem with re-annotating mutations in gene CEP170: skipping.
Problem with re-annotating mutations in gene CEP290: skipping.
Problem with re-annotating mutations in gene CFH: skipping.
Problem with re-annotating mutations in gene CHAF1A: skipping.
Problem with re-annotating mutations in gene CHAT: skipping.
Problem with re-annotating mutations in gene CHD1: skipping.
Problem with re-annotating mutations in gene CHD4: skipping.
Problem with re-annotating mutations in gene CHD6: skipping.
Problem with re-annotating mutations in gene CILP: skipping.
Problem with re-annotating mutations in gene CLEC1A: skipping.
Problem with re-annotating mutations in gene CLGN: skipping.
Problem with re-annotating mutations in gene CLK3: skipping.
Problem with re-annotating mutations in gene CLMN: skipping.
Problem with re-annotating mutations in gene CLSTN1: skipping.
Problem with re-annotating mutations in gene CLVS1: skipping.
Problem with re-annotating mutations in gene CNNM2: skipping.
Problem with re-annotating mutations in gene CNTN6: skipping.
Problem with re-annotating mutations in gene CNTNAP5: skipping.
Problem with re-annotating mutations in gene COBL: skipping.
Problem with re-annotating mutations in gene COL11A2: skipping.
Problem with re-annotating mutations in gene COL21A1: skipping.
Problem with re-annotating mutations in gene COL22A1: skipping.
Problem with re-annotating mutations in gene COL3A1: skipping.
Problem with re-annotating mutations in gene COL6A3: skipping.
Problem with re-annotating mutations in gene COL8A2: skipping.
600/2990 Problem with re-annotating mutations in gene CPEB4: skipping.
Problem with re-annotating mutations in gene CPNE3: skipping.
Problem with re-annotating mutations in gene CR1: skipping.
Problem with re-annotating mutations in gene CR1L: skipping.
Problem with re-annotating mutations in gene CRIPAK: skipping.
Problem with re-annotating mutations in gene CROCC: skipping.
Problem with re-annotating mutations in gene CRTAC1: skipping.
Problem with re-annotating mutations in gene CSMD1: skipping.
Problem with re-annotating mutations in gene CSMD2: skipping.
Problem with re-annotating mutations in gene CSMD3: skipping.
Problem with re-annotating mutations in gene CSPG4: skipping.
Problem with re-annotating mutations in gene CTNNAL1: skipping.
Problem with re-annotating mutations in gene CTNNB1: skipping.
Problem with re-annotating mutations in gene CTTNBP2: skipping.
Problem with re-annotating mutations in gene CYP2A6: skipping.
Problem with re-annotating mutations in gene CYP2A7: skipping.
Problem with re-annotating mutations in gene CYP2D6: skipping.
Problem with re-annotating mutations in gene DAAM2: skipping.
Problem with re-annotating mutations in gene DACT1: skipping.
Problem with re-annotating mutations in gene DBC1: skipping.
Problem with re-annotating mutations in gene DENND3: skipping.
Problem with re-annotating mutations in gene DEPDC1: skipping.
Problem with re-annotating mutations in gene DGCR14: skipping.
700/2990 Problem with re-annotating mutations in gene DGKQ: skipping.
Problem with re-annotating mutations in gene DHX34: skipping.
Problem with re-annotating mutations in gene DIS3: skipping.
Problem with re-annotating mutations in gene DKK2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene DMD: skipping.
Problem with re-annotating mutations in gene DMRT2: skipping.
Problem with re-annotating mutations in gene DMXL2: skipping.
Problem with re-annotating mutations in gene DNAH2: skipping.
Problem with re-annotating mutations in gene DNAH7: skipping.
Problem with re-annotating mutations in gene DNAH8: skipping.
Problem with re-annotating mutations in gene DNAH9: skipping.
Problem with re-annotating mutations in gene DNMT1: skipping.
Problem with re-annotating mutations in gene DOCK3: skipping.
Problem with re-annotating mutations in gene DPP6: skipping.
Problem with re-annotating mutations in gene DRD5: skipping.
Problem with re-annotating mutations in gene DSCAM: skipping.
Problem with re-annotating mutations in gene DUOX2: skipping.
Problem with re-annotating mutations in gene DUSP27: skipping.
Problem with re-annotating mutations in gene DYRK1A: skipping.
Problem with re-annotating mutations in gene EFCAB6: skipping.
Problem with re-annotating mutations in gene EGFR: skipping.
Problem with re-annotating mutations in gene EHMT2: skipping.
800/2990 Problem with re-annotating mutations in gene EML4: skipping.
Problem with re-annotating mutations in gene EML5: skipping.
Problem with re-annotating mutations in gene EMR2: skipping.
Problem with re-annotating mutations in gene ENAM: skipping.
Problem with re-annotating mutations in gene ENPP7: skipping.
Problem with re-annotating mutations in gene EPB41L3: skipping.
Problem with re-annotating mutations in gene EPB41L4A: skipping.
Problem with re-annotating mutations in gene EPPK1: skipping.
Problem with re-annotating mutations in gene ERCC2: skipping.
Problem with re-annotating mutations in gene ERCC6: skipping.
Problem with re-annotating mutations in gene ESCO1: skipping.
Problem with re-annotating mutations in gene ETV3: skipping.
Problem with re-annotating mutations in gene ETV3L: skipping.
Problem with re-annotating mutations in gene EXD3: skipping.
Problem with re-annotating mutations in gene EXOC2: skipping.
Problem with re-annotating mutations in gene FAM108A1: skipping.
Problem with re-annotating mutations in gene FAM13A: skipping.
Problem with re-annotating mutations in gene FAM171A1: skipping.
Problem with re-annotating mutations in gene FAM21C: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene FAM47C: skipping.
Problem with re-annotating mutations in gene FAM75A6: skipping.
Problem with re-annotating mutations in gene FAM75C1: skipping.
Problem with re-annotating mutations in gene FAM83B: skipping.
900/2990 Problem with re-annotating mutations in gene FAM86A: skipping.
Problem with re-annotating mutations in gene FANCD2: skipping.
Problem with re-annotating mutations in gene FASTKD2: skipping.
Problem with re-annotating mutations in gene FAT1: skipping.
Problem with re-annotating mutations in gene FAT2: skipping.
Problem with re-annotating mutations in gene FAT3: skipping.
Problem with re-annotating mutations in gene FAT4: skipping.
Problem with re-annotating mutations in gene FBN1: skipping.
Problem with re-annotating mutations in gene FBXO4: skipping.
Problem with re-annotating mutations in gene FCGBP: skipping.
Problem with re-annotating mutations in gene FCRL4: skipping.
Problem with re-annotating mutations in gene FGA: skipping.
Problem with re-annotating mutations in gene FGD2: skipping.
Problem with re-annotating mutations in gene FGFR1OP2: skipping.
Problem with re-annotating mutations in gene FIGN: skipping.
Problem with re-annotating mutations in gene FILIP1: skipping.
Problem with re-annotating mutations in gene FIP1L1: skipping.
Problem with re-annotating mutations in gene FKBP4: skipping.
Problem with re-annotating mutations in gene FLG: skipping.
Problem with re-annotating mutations in gene FLG2: skipping.
Problem with re-annotating mutations in gene FMN2: skipping.
Problem with re-annotating mutations in gene FNBP4: skipping.
Problem with re-annotating mutations in gene FNIP2: skipping.
Problem with re-annotating mutations in gene FOXA1: skipping.
Problem with re-annotating mutations in gene FOXA2: skipping.
Problem with re-annotating mutations in gene FRAS1: skipping.
Problem with re-annotating mutations in gene FRG1: skipping.
Problem with re-annotating mutations in gene FTCD: skipping.
Problem with re-annotating mutations in gene FZD2: skipping.
Problem with re-annotating mutations in gene FZD4: skipping.
1000/2990 convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene GABRE: skipping.
Problem with re-annotating mutations in gene GABRG1: skipping.
Problem with re-annotating mutations in gene GABRR2: skipping.
Problem with re-annotating mutations in gene GALNT4: skipping.
Problem with re-annotating mutations in gene GALNT6: skipping.
Problem with re-annotating mutations in gene GAPVD1: skipping.
Problem with re-annotating mutations in gene GCC2: skipping.
Problem with re-annotating mutations in gene GGT1: skipping.
Problem with re-annotating mutations in gene GGTLC2: skipping.
Problem with re-annotating mutations in gene GJB3: skipping.
Problem with re-annotating mutations in gene GLTSCR1: skipping.
Problem with re-annotating mutations in gene GOLGA6B: skipping.
Problem with re-annotating mutations in gene GPATCH4: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene GPR112: skipping.
Problem with re-annotating mutations in gene GPR133: skipping.
Problem with re-annotating mutations in gene GPR37L1: skipping.
Problem with re-annotating mutations in gene GPRIN3: skipping.
Problem with re-annotating mutations in gene GRID2: skipping.
Problem with re-annotating mutations in gene GRIN2A: skipping.
Problem with re-annotating mutations in gene GRK6: skipping.
1100/2990 Problem with re-annotating mutations in gene GRM5: skipping.
Problem with re-annotating mutations in gene GRM7: skipping.
Problem with re-annotating mutations in gene GUCY1A2: skipping.
Problem with re-annotating mutations in gene HELB: skipping.
Problem with re-annotating mutations in gene HEPHL1: skipping.
Problem with re-annotating mutations in gene HERC2: skipping.
Problem with re-annotating mutations in gene HEXB: skipping.
Problem with re-annotating mutations in gene HFM1: skipping.
Problem with re-annotating mutations in gene HGF: skipping.
Problem with re-annotating mutations in gene HLA-C: skipping.
Problem with re-annotating mutations in gene HMCN1: skipping.
Problem with re-annotating mutations in gene HOOK2: skipping.
Problem with re-annotating mutations in gene HRNR: skipping.
Problem with re-annotating mutations in gene HS6ST1: skipping.
Problem with re-annotating mutations in gene HSPG2: skipping.
Problem with re-annotating mutations in gene HTT: skipping.
1200/2990 convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene IGBP1: skipping.
Problem with re-annotating mutations in gene IGDCC4: skipping.
Problem with re-annotating mutations in gene INA: skipping.
Problem with re-annotating mutations in gene INADL: skipping.
Problem with re-annotating mutations in gene INHBA: skipping.
Problem with re-annotating mutations in gene INTS4: skipping.
Problem with re-annotating mutations in gene INTU: skipping.
Problem with re-annotating mutations in gene IPO8: skipping.
Problem with re-annotating mutations in gene IQGAP1: skipping.
Problem with re-annotating mutations in gene IRS2: skipping.
Problem with re-annotating mutations in gene ITGBL1: skipping.
Problem with re-annotating mutations in gene JAK1: skipping.
Problem with re-annotating mutations in gene KALRN: skipping.
Problem with re-annotating mutations in gene KANK1: skipping.
Problem with re-annotating mutations in gene KANK4: skipping.
Problem with re-annotating mutations in gene KAT2A: skipping.
Problem with re-annotating mutations in gene KCNB1: skipping.
Problem with re-annotating mutations in gene KCNB2: skipping.
Problem with re-annotating mutations in gene KCND3: skipping.
Problem with re-annotating mutations in gene KCNG1: skipping.
1300/2990 Problem with re-annotating mutations in gene KDR: skipping.
Problem with re-annotating mutations in gene KIAA0754: skipping.
Problem with re-annotating mutations in gene KIAA0802: skipping.
Problem with re-annotating mutations in gene KIAA1217: skipping.
Problem with re-annotating mutations in gene KIAA1324L: skipping.
Problem with re-annotating mutations in gene KIAA1370: skipping.
Problem with re-annotating mutations in gene KIAA1409: skipping.
Problem with re-annotating mutations in gene KIF21B: skipping.
Problem with re-annotating mutations in gene KIF23: skipping.
Problem with re-annotating mutations in gene KIF3B: skipping.
Problem with re-annotating mutations in gene KIRREL: skipping.
Problem with re-annotating mutations in gene KLC2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene KLHL13: skipping.
Problem with re-annotating mutations in gene KLK3: skipping.
Problem with re-annotating mutations in gene KRT1: skipping.
Problem with re-annotating mutations in gene KRT18: skipping.
Problem with re-annotating mutations in gene KRT25: skipping.
Problem with re-annotating mutations in gene KRT6C: skipping.
Problem with re-annotating mutations in gene KRTAP10-6: skipping.
1400/2990 Problem with re-annotating mutations in gene KRTAP4-11: skipping.
Problem with re-annotating mutations in gene KRTAP5-5: skipping.
Problem with re-annotating mutations in gene KYNU: skipping.
Problem with re-annotating mutations in gene LAMA4: skipping.
Problem with re-annotating mutations in gene LAMC1: skipping.
Problem with re-annotating mutations in gene LARP1: skipping.
Problem with re-annotating mutations in gene LCE2D: skipping.
Problem with re-annotating mutations in gene LCN2: skipping.
Problem with re-annotating mutations in gene LCTL: skipping.
Problem with re-annotating mutations in gene LHX3: skipping.
Problem with re-annotating mutations in gene LILRA4: skipping.
Problem with re-annotating mutations in gene LILRB1: skipping.
Problem with re-annotating mutations in gene LILRB3: skipping.
Problem with re-annotating mutations in gene LIMCH1: skipping.
Problem with re-annotating mutations in gene LIMK2: skipping.
Problem with re-annotating mutations in gene LINGO2: skipping.
Problem with re-annotating mutations in gene LPHN3: skipping.
Problem with re-annotating mutations in gene LRIG2: skipping.
Problem with re-annotating mutations in gene LRIG3: skipping.
Problem with re-annotating mutations in gene LRIT2: skipping.
Problem with re-annotating mutations in gene LRP1: skipping.
Problem with re-annotating mutations in gene LRP1B: skipping.
Problem with re-annotating mutations in gene LRRC36: skipping.
Problem with re-annotating mutations in gene LRRC37A2: skipping.
Problem with re-annotating mutations in gene LRRC49: skipping.
Problem with re-annotating mutations in gene LRRC4B: skipping.
1500/2990 Problem with re-annotating mutations in gene LYST: skipping.
Problem with re-annotating mutations in gene MCC: skipping.
Problem with re-annotating mutations in gene MED1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MED12: skipping.
Problem with re-annotating mutations in gene MED15: skipping.
Problem with re-annotating mutations in gene MEF2A: skipping.
Problem with re-annotating mutations in gene METTL3: skipping.
Problem with re-annotating mutations in gene MKI67: skipping.
Problem with re-annotating mutations in gene MLL2: skipping.
Problem with re-annotating mutations in gene MLL3: skipping.
Problem with re-annotating mutations in gene MLLT10: skipping.
Problem with re-annotating mutations in gene MMP12: skipping.
Problem with re-annotating mutations in gene MOCOS: skipping.
1600/2990 Problem with re-annotating mutations in gene MOXD1: skipping.
Problem with re-annotating mutations in gene MPDZ: skipping.
Problem with re-annotating mutations in gene MPEG1: skipping.
Problem with re-annotating mutations in gene MSH3: skipping.
Problem with re-annotating mutations in gene MSH6: skipping.
Problem with re-annotating mutations in gene MSLNL: skipping.
Problem with re-annotating mutations in gene MTOR: skipping.
Problem with re-annotating mutations in gene MTTP: skipping.
Problem with re-annotating mutations in gene MUC16: skipping.
Problem with re-annotating mutations in gene MUC17: skipping.
Problem with re-annotating mutations in gene MUC2: skipping.
Problem with re-annotating mutations in gene MUC21: skipping.
Problem with re-annotating mutations in gene MUC4: skipping.
Problem with re-annotating mutations in gene MYCBP2: skipping.
Problem with re-annotating mutations in gene MYH15: skipping.
Problem with re-annotating mutations in gene MYH4: skipping.
Problem with re-annotating mutations in gene MYH6: skipping.
Problem with re-annotating mutations in gene MYH7: skipping.
Problem with re-annotating mutations in gene MYH7B: skipping.
Problem with re-annotating mutations in gene MYL6: skipping.
Problem with re-annotating mutations in gene MYLIP: skipping.
Problem with re-annotating mutations in gene MYO18B: skipping.
Problem with re-annotating mutations in gene NASP: skipping.
Problem with re-annotating mutations in gene NAV2: skipping.
Problem with re-annotating mutations in gene NBPF1: skipping.
Problem with re-annotating mutations in gene NBPF10: skipping.
Problem with re-annotating mutations in gene NBPF3: skipping.
Problem with re-annotating mutations in gene NCAM2: skipping.
1700/2990 Problem with re-annotating mutations in gene NCKAP5: skipping.
Problem with re-annotating mutations in gene NDN: skipping.
Problem with re-annotating mutations in gene NDUFS4: skipping.
Problem with re-annotating mutations in gene NEB: skipping.
Problem with re-annotating mutations in gene NEUROD6: skipping.
Problem with re-annotating mutations in gene NGLY1: skipping.
Problem with re-annotating mutations in gene NID1: skipping.
Problem with re-annotating mutations in gene NKX3-1: skipping.
Problem with re-annotating mutations in gene NLRP1: skipping.
Problem with re-annotating mutations in gene NLRP3: skipping.
Problem with re-annotating mutations in gene NOTCH2NL: skipping.
Problem with re-annotating mutations in gene NTM: skipping.
Problem with re-annotating mutations in gene NTNG1: skipping.
Problem with re-annotating mutations in gene NTRK1: skipping.
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene NUDT11: skipping.
Problem with re-annotating mutations in gene NUDT6: skipping.
Problem with re-annotating mutations in gene NYNRIN: skipping.
Problem with re-annotating mutations in gene OBSCN: skipping.
1800/2990 Problem with re-annotating mutations in gene OR10G8: skipping.
Problem with re-annotating mutations in gene OR2AE1: skipping.
Problem with re-annotating mutations in gene OR2G6: skipping.
Problem with re-annotating mutations in gene OR2M3: skipping.
Problem with re-annotating mutations in gene OR4A16: skipping.
Problem with re-annotating mutations in gene OR4D5: skipping.
Problem with re-annotating mutations in gene OR52A1: skipping.
Problem with re-annotating mutations in gene OR5AS1: skipping.
Problem with re-annotating mutations in gene OR5B12: skipping.
Problem with re-annotating mutations in gene OR5H14: skipping.
Problem with re-annotating mutations in gene OR5L2: skipping.
Problem with re-annotating mutations in gene OR5R1: skipping.
Problem with re-annotating mutations in gene OR6N1: skipping.
Problem with re-annotating mutations in gene OR6Y1: skipping.
Problem with re-annotating mutations in gene OR7A5: skipping.
Problem with re-annotating mutations in gene OR9Q2: skipping.
Problem with re-annotating mutations in gene OTOP1: skipping.
Problem with re-annotating mutations in gene PAPLN: skipping.
Problem with re-annotating mutations in gene PAPPA2: skipping.
1900/2990 Problem with re-annotating mutations in gene PBX4: skipping.
Problem with re-annotating mutations in gene PCDH17: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene PCDH19: skipping.
Problem with re-annotating mutations in gene PCDHA10: skipping.
Problem with re-annotating mutations in gene PCDHA13: skipping.
Problem with re-annotating mutations in gene PCDHA3: skipping.
Problem with re-annotating mutations in gene PCDHA6: skipping.
Problem with re-annotating mutations in gene PCDHB12: skipping.
Problem with re-annotating mutations in gene PCDHB14: skipping.
Problem with re-annotating mutations in gene PCDHB5: skipping.
Problem with re-annotating mutations in gene PCDHB7: skipping.
Problem with re-annotating mutations in gene PCDHGA2: skipping.
Problem with re-annotating mutations in gene PCDHGA6: skipping.
Problem with re-annotating mutations in gene PCDHGB3: skipping.
Problem with re-annotating mutations in gene PCDHGB7: skipping.
Problem with re-annotating mutations in gene PCLO: skipping.
Problem with re-annotating mutations in gene PDCD1: skipping.
Problem with re-annotating mutations in gene PDE2A: skipping.
Problem with re-annotating mutations in gene PDE4DIP: skipping.
Problem with re-annotating mutations in gene PDZRN3: skipping.
Problem with re-annotating mutations in gene PIK3CA: skipping.
Problem with re-annotating mutations in gene PIKFYVE: skipping.
Problem with re-annotating mutations in gene PIM1: skipping.
Problem with re-annotating mutations in gene PIP5K1C: skipping.
Problem with re-annotating mutations in gene PIWIL1: skipping.
Problem with re-annotating mutations in gene PKD1: skipping.
Problem with re-annotating mutations in gene PKHD1L1: skipping.
2000/2990 Problem with re-annotating mutations in gene PLCH2: skipping.
Problem with re-annotating mutations in gene PLXNA2: skipping.
Problem with re-annotating mutations in gene PLXNB2: skipping.
Problem with re-annotating mutations in gene PNLIPRP2: skipping.
Problem with re-annotating mutations in gene POM121: skipping.
Problem with re-annotating mutations in gene POTEC: skipping.
Problem with re-annotating mutations in gene POTEE: skipping.
Problem with re-annotating mutations in gene PPP2R2B: skipping.
Problem with re-annotating mutations in gene PRAMEF2: skipping.
Problem with re-annotating mutations in gene PRB1: skipping.
Problem with re-annotating mutations in gene PRDM9: skipping.
Problem with re-annotating mutations in gene PREX2: skipping.
Problem with re-annotating mutations in gene PRG4: skipping.
Problem with re-annotating mutations in gene PRIM2: skipping.
Problem with re-annotating mutations in gene PRKDC: skipping.
Problem with re-annotating mutations in gene PROKR1: skipping.
Problem with re-annotating mutations in gene PROZ: skipping.
Problem with re-annotating mutations in gene PRR21: skipping.
2100/2990 Problem with re-annotating mutations in gene PRSS48: skipping.
Problem with re-annotating mutations in gene PRSS50: skipping.
Problem with re-annotating mutations in gene PSG3: skipping.
Problem with re-annotating mutations in gene PSRC1: skipping.
Problem with re-annotating mutations in gene PTEN: skipping.
Problem with re-annotating mutations in gene PTK7: skipping.
Problem with re-annotating mutations in gene PTPN21: skipping.
Problem with re-annotating mutations in gene PTPRD: skipping.
Problem with re-annotating mutations in gene PUM2: skipping.
Problem with re-annotating mutations in gene RAE1: skipping.
Problem with re-annotating mutations in gene RASAL1: skipping.
Problem with re-annotating mutations in gene RASAL2: skipping.
Problem with re-annotating mutations in gene RASGRF1: skipping.
Problem with re-annotating mutations in gene RASGRF2: skipping.
Problem with re-annotating mutations in gene RCBTB2: skipping.
Problem with re-annotating mutations in gene RHBDD1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene RLIM: skipping.
Problem with re-annotating mutations in gene RNF160: skipping.
Problem with re-annotating mutations in gene RNF17: skipping.
2200/2990 Problem with re-annotating mutations in gene ROBO4: skipping.
Problem with re-annotating mutations in gene ROCK1: skipping.
Problem with re-annotating mutations in gene ROR2: skipping.
Problem with re-annotating mutations in gene RP1: skipping.
Problem with re-annotating mutations in gene RP1L1: skipping.
Problem with re-annotating mutations in gene RPE65: skipping.
Problem with re-annotating mutations in gene RPS18: skipping.
Problem with re-annotating mutations in gene RTL1: skipping.
Problem with re-annotating mutations in gene SALL1: skipping.
Problem with re-annotating mutations in gene SALL3: skipping.
Problem with re-annotating mutations in gene SARDH: skipping.
Problem with re-annotating mutations in gene SCAI: skipping.
Problem with re-annotating mutations in gene SCN10A: skipping.
Problem with re-annotating mutations in gene SCN11A: skipping.
Problem with re-annotating mutations in gene SCN5A: skipping.
Problem with re-annotating mutations in gene SCN7A: skipping.
Problem with re-annotating mutations in gene SDAD1: skipping.
Problem with re-annotating mutations in gene SECISBP2L: skipping.
Problem with re-annotating mutations in gene SEL1L: skipping.
Problem with re-annotating mutations in gene SEPT9: skipping.
Problem with re-annotating mutations in gene SETD5: skipping.
2300/2990 Problem with re-annotating mutations in gene SFI1: skipping.
Problem with re-annotating mutations in gene SFRS11: skipping.
Problem with re-annotating mutations in gene SGSH: skipping.
Problem with re-annotating mutations in gene SHPRH: skipping.
Problem with re-annotating mutations in gene SIGLEC1: skipping.
Problem with re-annotating mutations in gene SIK3: skipping.
Problem with re-annotating mutations in gene SIPA1L1: skipping.
Problem with re-annotating mutations in gene SIPA1L3: skipping.
Problem with re-annotating mutations in gene SKIV2L2: skipping.
Problem with re-annotating mutations in gene SLC10A2: skipping.
Problem with re-annotating mutations in gene SLC15A3: skipping.
Problem with re-annotating mutations in gene SLC28A1: skipping.
Problem with re-annotating mutations in gene SLC2A6: skipping.
Problem with re-annotating mutations in gene SLC5A2: skipping.
Problem with re-annotating mutations in gene SLC6A15: skipping.
Problem with re-annotating mutations in gene SLC6A5: skipping.
2400/2990 Problem with re-annotating mutations in gene SLC8A3: skipping.
Problem with re-annotating mutations in gene SLIT1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene SLITRK4: skipping.
Problem with re-annotating mutations in gene SLITRK5: skipping.
Problem with re-annotating mutations in gene SMARCB1: skipping.
Problem with re-annotating mutations in gene SMC2: skipping.
Problem with re-annotating mutations in gene SNCAIP: skipping.
Problem with re-annotating mutations in gene SNTG2: skipping.
Problem with re-annotating mutations in gene SORBS1: skipping.
Problem with re-annotating mutations in gene SPAG16: skipping.
Problem with re-annotating mutations in gene SPATA5L1: skipping.
Problem with re-annotating mutations in gene SPEN: skipping.
Problem with re-annotating mutations in gene SPHKAP: skipping.
Problem with re-annotating mutations in gene SPOP: skipping.
Problem with re-annotating mutations in gene SPTA1: skipping.
Problem with re-annotating mutations in gene SPTBN5: skipping.
Problem with re-annotating mutations in gene SSPO: skipping.
2500/2990 Problem with re-annotating mutations in gene STAT3: skipping.
Problem with re-annotating mutations in gene STON1-GTF2A1L: skipping.
Problem with re-annotating mutations in gene SULF1: skipping.
Problem with re-annotating mutations in gene SUPT5H: skipping.
Problem with re-annotating mutations in gene SYK: skipping.
Problem with re-annotating mutations in gene SYNE1: skipping.
Problem with re-annotating mutations in gene SYNE2: skipping.
Problem with re-annotating mutations in gene TAF1L: skipping.
Problem with re-annotating mutations in gene TAL2: skipping.
Problem with re-annotating mutations in gene TBC1D2: skipping.
Problem with re-annotating mutations in gene TBC1D29: skipping.
Problem with re-annotating mutations in gene TBL1XR1: skipping.
Problem with re-annotating mutations in gene TBX18: skipping.
Problem with re-annotating mutations in gene TBX3: skipping.
Problem with re-annotating mutations in gene TBX5: skipping.
Problem with re-annotating mutations in gene TBXA2R: skipping.
Problem with re-annotating mutations in gene TFAP2D: skipping.
Problem with re-annotating mutations in gene TFB2M: skipping.
Problem with re-annotating mutations in gene THSD7B: skipping.
Problem with re-annotating mutations in gene TIMELESS: skipping.
2600/2990 Problem with re-annotating mutations in gene TJP2: skipping.
Problem with re-annotating mutations in gene TLL1: skipping.
Problem with re-annotating mutations in gene TNC: skipping.
Problem with re-annotating mutations in gene TNFRSF10C: skipping.
Problem with re-annotating mutations in gene TNKS: skipping.
Problem with re-annotating mutations in gene TNN: skipping.
Problem with re-annotating mutations in gene TNS1: skipping.
Problem with re-annotating mutations in gene TNXB: skipping.
Problem with re-annotating mutations in gene TP53: skipping.
Problem with re-annotating mutations in gene TPR: skipping.
Problem with re-annotating mutations in gene TPRN: skipping.
Problem with re-annotating mutations in gene TPTE: skipping.
Problem with re-annotating mutations in gene TPTE2: skipping.
Problem with re-annotating mutations in gene TRAF3IP3: skipping.
Problem with re-annotating mutations in gene TRIM41: skipping.
Problem with re-annotating mutations in gene TRIOBP: skipping.
Problem with re-annotating mutations in gene TRPM6: skipping.
2700/2990 Problem with re-annotating mutations in gene TTLL11: skipping.
Problem with re-annotating mutations in gene TTN: skipping.
Problem with re-annotating mutations in gene TUBA3C: skipping.
Problem with re-annotating mutations in gene U2AF1: skipping.
Problem with re-annotating mutations in gene UGT2B10: skipping.
Problem with re-annotating mutations in gene ULK4: skipping.
Problem with re-annotating mutations in gene UNC5B: skipping.
Problem with re-annotating mutations in gene USH2A: skipping.
Problem with re-annotating mutations in gene USP15: skipping.
Problem with re-annotating mutations in gene USP19: skipping.
Problem with re-annotating mutations in gene UTP3: skipping.
2800/2990 Problem with re-annotating mutations in gene VPS13B: skipping.
Problem with re-annotating mutations in gene VPS13C: skipping.
Problem with re-annotating mutations in gene VPS13D: skipping.
Problem with re-annotating mutations in gene WDFY3: skipping.
Problem with re-annotating mutations in gene WNT11: skipping.
Problem with re-annotating mutations in gene XIRP1: skipping.
Problem with re-annotating mutations in gene XIRP2: skipping.
Problem with re-annotating mutations in gene XRCC6: skipping.
Problem with re-annotating mutations in gene YBX1: skipping.
Problem with re-annotating mutations in gene ZAN: skipping.
Problem with re-annotating mutations in gene ZC3HAV1: skipping.
Problem with re-annotating mutations in gene ZDBF2: skipping.
Problem with re-annotating mutations in gene ZFPM2: skipping.
Problem with re-annotating mutations in gene ZIC1: skipping.
2900/2990 convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ZMYM3: skipping.
Problem with re-annotating mutations in gene ZNF181: skipping.
Problem with re-annotating mutations in gene ZNF257: skipping.
Problem with re-annotating mutations in gene ZNF285: skipping.
Problem with re-annotating mutations in gene ZNF292: skipping.
Problem with re-annotating mutations in gene ZNF423: skipping.
Problem with re-annotating mutations in gene ZNF462: skipping.
Problem with re-annotating mutations in gene ZNF485: skipping.
Problem with re-annotating mutations in gene ZNF492: skipping.
Problem with re-annotating mutations in gene ZNF518A: skipping.
Problem with re-annotating mutations in gene ZNF536: skipping.
Problem with re-annotating mutations in gene ZNF799: skipping.
Problem with re-annotating mutations in gene ZNF814: skipping.
Problem with re-annotating mutations in gene ZNF98: skipping.
Problem with re-annotating mutations in gene ZNF99: skipping.

Analyzing gene-gene correlations and anti-correlations
Performing permutations:
0.25	10/1000000	0.03	0.025	39.7	2111/2145 pairs	32/66 genes done
0.67	209/1000000	0.00	0.002	471.4	2139/2145 pairs	60/66 genes done
1.98	2559/1000000	0.00	0.001	1796.8	2143/2145 pairs	63/66 genes done
4.05	11542/1000000	0.00	0.000	4346.8	2144/2145 pairs	64/66 genes done
8.71	33276/1000000	0.00	0.000	4664.4	2144/2145 pairs	64/66 genes done
13.72	56599/1000000	0.00	0.000	4652.0	2144/2145 pairs	64/66 genes done
18.71	79921/1000000	0.00	0.000	4679.0	2144/2145 pairs	64/66 genes done
23.71	103316/1000000	0.00	0.000	4677.0	2144/2145 pairs	64/66 genes done
28.70	126711/1000000	0.00	0.000	4682.8	2144/2145 pairs	64/66 genes done
33.71	150126/1000000	0.00	0.000	4679.1	2144/2145 pairs	64/66 genes done
38.80	173540/1000000	0.00	0.000	4601.5	2144/2145 pairs	64/66 genes done
43.80	196954/1000000	0.00	0.000	4679.5	2144/2145 pairs	64/66 genes done
48.80	220368/1000000	0.00	0.000	4681.8	2144/2145 pairs	64/66 genes done
53.82	243782/1000000	0.00	0.000	4663.9	2144/2145 pairs	64/66 genes done
55.51	251645/1000000	0.00	0.000	4670.2	2145/2145 pairs	66/66 genes done

Top gene-gene pairs:
CLSTN1	NDUFS4	0.000016	0.034096	correlated
CLSTN1	SFRS11	0.001071	0.952101	correlated
CLSTN1	FAM13A	0.001885	0.952101	correlated
NDUFS4	SFRS11	0.002083	0.952101	correlated
FAM13A	NDUFS4	0.005917	0.952101	correlated
FRG1	TPTE2	0.006182	0.952101	correlated
CYP2D6	SCAI	0.020725	0.952101	correlated
LRIT2	MUC4	0.029197	0.952101	correlated
LRIT2	PDE4DIP	0.033898	0.952101	correlated
MUC4	PDE4DIP	0.043478	0.952101	correlated
FAM13A	INA	0.047899	0.952101	correlated
PIM1	SORBS1	0.047899	0.952101	correlated
NKX3-1	ZNF814	0.051282	0.952101	none
COBL	PIM1	0.055556	0.952101	none
LCTL	LRRC37A2	0.055556	0.952101	none
FAM13A	TNFRSF10C	0.056338	0.952101	none
NUDT11	THSD7B	0.059701	0.952101	none
OR6Y1	SLC2A6	0.061538	0.952101	none
FAM13A	SFRS11	0.062500	0.952101	none
FAM13A	SORBS1	0.063492	0.952101	none
GJB3	OR2AE1	0.067797	0.952101	none
INA	TNFRSF10C	0.070175	0.952101	none
CHEK2	DUSP27	0.071408	0.952101	none
CHEK2	OR4D5	0.071408	0.952101	none
COBL	CTNNB1	0.071408	0.952101	none
DIS3	POTEC	0.071408	0.952101	none
FAM13A	POM121	0.071408	0.952101	none
FNBP4	POTEC	0.071408	0.952101	none
GPATCH4	NOTCH2NL	0.071408	0.952101	none
INA	NDUFS4	0.071408	0.952101	none
INA	POM121	0.071408	0.952101	none
NASP	NDUFS4	0.071408	0.952101	none
NUDT11	YBX1	0.071408	0.952101	none
OR4A16	POTEC	0.071408	0.952101	none
OR6Y1	YBX1	0.071408	0.952101	none
AGT	ETV3	0.071408	0.952101	none
AGT	GJB3	0.071408	0.952101	none
AGT	LRRC37A2	0.071408	0.952101	none
C9orf150	GPATCH4	0.071408	0.952101	none
C9orf150	LCTL	0.071408	0.952101	none
C9orf150	LRRC37A2	0.071408	0.952101	none
CCNF	GPATCH4	0.071408	0.952101	none
CCNF	LCTL	0.071408	0.952101	none
CCNF	PTK7	0.071408	0.952101	none
CLSTN1	INA	0.071408	0.952101	none
CLSTN1	NASP	0.071408	0.952101	none
CLSTN1	SORBS1	0.071408	0.952101	none
CLSTN1	TNFRSF10C	0.071408	0.952101	none
CTNNB1	NASP	0.071408	0.952101	none
CTNNB1	PIM1	0.071408	0.952101	none
DUSP27	PTK7	0.071408	0.952101	none
FIP1L1	NASP	0.071408	0.952101	none
NDUFS4	SORBS1	0.071408	0.952101	none
NDUFS4	TNFRSF10C	0.071408	0.952101	none
NOTCH2NL	SFRS11	0.071408	0.952101	none
OR6N1	PIM1	0.071408	0.952101	none
OR6N1	SORBS1	0.071408	0.952101	none
POM121	SFRS11	0.071408	0.952101	none
POM121	TNFRSF10C	0.071408	0.952101	none
DIS3	FNBP4	0.071429	0.952101	none
Analyzing power per gene...
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Generating gene coverage plots...
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/1.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/2.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/3.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/4.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/5.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/6.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/7.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/8.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/9.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/10.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/11.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/12.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/13.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/14.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/15.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/16.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/17.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/18.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/19.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/20.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/21.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/22.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/23.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/24.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/25.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/26.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/27.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/28.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/29.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/30.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/31.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/32.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/33.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/34.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/35.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/36.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/37.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/38.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/39.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/40.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/41.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/42.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/43.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/44.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/45.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/46.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/47.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/48.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/49.png
Superimposing mutations
Outputting figure to ./PRAD.gene_coverage_plots/50.png
generate_gene_coverage_plots finished
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 0 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200
*** Prepare stdandard out:
cat: prepare.out: No such file or directory
*** Prepare stdandard err:
cat: prepare.err: No such file or directory
*** Scatter stdandard out:
Sender: LSF System <lsf@node1651>
Subject: Job 9876894: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1651>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000001> was used as the working directory.
Started at Fri Oct  5 22:22:56 2012
Results reported at Fri Oct  5 22:24:54 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000001.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000001.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 1  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000001.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    131.41 sec.
    Max Memory :      2069 MB
    Max Swap   :      4686 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
1
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 1
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 1: processing genes 1 - 91
Calculating significance of each gene.
Using projection method.
1	A1BG	9.469069e-02
2	A1CF	1
3	A2BP1	1.721622e-02
4	A2M	1
5	A2ML1	1
6	A4GALT	1
7	A4GNT	1
8	AAAS	1
9	AACS	1
10	AADAC	1.200920e-01
11	AADACL2	1
12	AADACL3	1
13	AADACL4	1
14	AADAT	1
15	AAGAB	1
16	AAK1	1
17	AAMP	1
18	AANAT	1
19	AARS	1
20	AARS2	1
21	AARSD1	1
22	AASDH	7.356220e-02
23	AASDHPPT	1
24	AASS	1
25	AATF	1
26	AATK	2.909313e-02
27	ABAT	1
28	ABCA1	1
29	ABCA10	1
In gene ABCA12 the following bins exceed PROBCAP:
    PRAD-CH-5772	categ 6	N = 8031    n = 1	mu =   3.94e-07
30	ABCA12	1.852229e-01
31	ABCA13	1
32	ABCA2	1
33	ABCA3	2.644858e-01
34	ABCA4	8.410112e-02
35	ABCA5	2.991596e-01
36	ABCA6	1
37	ABCA7	3.740212e-01
38	ABCA8	1
39	ABCA9	1
40	ABCB1	1.963025e-02
41	ABCB10	1
42	ABCB11	1
43	ABCB4	1
44	ABCB5	8.308205e-02
45	ABCB6	5.168370e-02
46	ABCB7	2.168122e-01
47	ABCB8	1
48	ABCB9	1
49	ABCC1	1
50	ABCC10	2.485099e-01
51	ABCC11	8.429959e-02
52	ABCC12	2.150800e-01
53	ABCC2	1
54	ABCC3	1
55	ABCC4	1.857093e-01
56	ABCC5	1
57	ABCC6	1
58	ABCC8	1
59	ABCC9	1
60	ABCD1	1
61	ABCD2	1
62	ABCD3	1
63	ABCD4	1
64	ABCE1	1
65	ABCF1	1
66	ABCF2	1
67	ABCF3	1.655272e-01
68	ABCG1	8.138734e-02
69	ABCG2	1
70	ABCG4	1
71	ABCG5	1
72	ABCG8	1
73	ABHD1	1
In gene ABHD10 the following bins exceed PROBCAP:
    PRAD-EJ-5511	categ 6	N = 941     n = 1	mu =   2.34e-07
74	ABHD10	2.369987e-02
75	ABHD11	1
76	ABHD12	1
77	ABHD12B	1
78	ABHD13	1
79	ABHD14A	1
80	ABHD14B	1
81	ABHD15	1
82	ABHD2	5.413877e-02
83	ABHD3	1
84	ABHD4	1
85	ABHD5	1
86	ABHD6	1
87	ABHD8	1
88	ABI1	1
89	ABI2	1
90	ABI3	1
91	ABI3BP	1
Done

Running MutSig 2:
Scatter job 1: processing genes 1 - 91
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
A2BP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.526847e-03	ci left: 9.506481e-01	ci right 9.588844e-01	k: 9549	n:10000
Cons ci ratio: 4.721013e-02	ci left: 3.983455e-01	ci right 4.177081e-01	k: 4080	n:10000
KS ci ratio: 2.790793e-02	ci left: 6.542430e-01	ci right 6.728616e-01	k: 6636	n:10000
A2BP1   10000 perm   2 sec   (5353 perm/sec)   p_kst 6.636000e-01   p_cons 4.080000e-01   p_joint 9.549000e-01

Outputting figure to mutsig2_images.part000000000001/A2BP1.2_1441_10000_0.6636_0.408_0.9549.png
                gene_name: A2BP1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 20 percent done.
ABCA12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.665096e-02	ci left: 5.236636e-01	ci right 5.433168e-01	k: 5335	n:10000
Cons ci ratio: 1.269727e-02	ci left: 8.991872e-01	ci right 9.107756e-01	k: 9051	n:10000
KS ci ratio: 9.255073e-02	ci left: 1.450154e-01	ci right 1.591879e-01	k: 1520	n:10000
ABCA12   10000 perm   2 sec   (4301 perm/sec)   p_kst 1.520000e-01   p_cons 9.051000e-01   p_joint 5.335000e-01

Outputting figure to mutsig2_images.part000000000001/ABCA12.2_8031_10000_0.152_0.9051_0.5335.png
                gene_name: ABCA12
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 40 percent done.
ABCA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.647618e-02	ci left: 6.775056e-01	ci right 6.957856e-01	k: 6867	n:10000
Cons ci ratio: 6.509927e-02	ci left: 2.573588e-01	ci right 2.747777e-01	k: 2660	n:10000
KS ci ratio: 8.814885e-02	ci left: 1.577733e-01	ci right 1.724223e-01	k: 1650	n:10000
ABCA4   10000 perm   2 sec   (4229 perm/sec)   p_kst 1.650000e-01   p_cons 2.660000e-01   p_joint 6.867000e-01

Outputting figure to mutsig2_images.part000000000001/ABCA4.2_7022_10000_0.165_0.266_0.6867.png
                gene_name: ABCA4
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 60 percent done.
ABCB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.226108e-03	ci left: 9.537785e-01	ci right 9.617521e-01	k: 9579	n:10000
KS ci ratio: 1.997964e-02	ci left: 7.857354e-01	ci right 8.016931e-01	k: 7938	n:10000
ABCB1   10000 perm   2 sec   (5325 perm/sec)   p_kst 7.938000e-01   p_cons 9.579000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000001/ABCB1.2_3951_10000_0.7938_0.9579_1.png
                gene_name: ABCB1
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
ABCC11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.518897e-02	ci left: 5.438924e-01	ci right 5.634763e-01	k: 5537	n:10000
Cons ci ratio: 9.308130e-03	ci left: 9.421155e-01	ci right 9.510221e-01	k: 9467	n:10000
KS ci ratio: 1.338395e-01	ci left: 7.368948e-02	ci right 8.435729e-02	k: 789	n:10000
ABCC11   10000 perm   2 sec   (5409 perm/sec)   p_kst 7.890000e-02   p_cons 9.467000e-01   p_joint 5.537000e-01

Joint ci ratio: 3.237381e-02	ci left: 4.160899e-01	ci right 4.298325e-01	k: 8459	n:20000
Cons ci ratio: 6.692654e-03	ci left: 9.416988e-01	ci right 9.480711e-01	k: 18899	n:20000
KS ci ratio: 9.358373e-02	ci left: 7.686346e-02	ci right 8.445898e-02	k: 1612	n:20000
ABCC11   20000 perm   4 sec   (4648 perm/sec)   p_kst 8.060000e-02   p_cons 9.449500e-01   p_joint 4.229500e-01

Outputting figure to mutsig2_images.part000000000001/ABCC11.2_4265_20000_0.0806_0.94495_0.42295.png
                gene_name: ABCC11
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.084 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.43 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000001
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 1 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1701>
Subject: Job 9876898: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1701>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000002> was used as the working directory.
Started at Fri Oct  5 22:22:56 2012
Results reported at Fri Oct  5 22:24:43 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000002.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000002.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 2  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000002.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    103.65 sec.
    Max Memory :      1767 MB
    Max Swap   :      4603 MB

    Max Processes  :         7
    Max Threads    :        55

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
2
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 2
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 2: processing genes 92 - 181
Calculating significance of each gene.
Using projection method.
92	ABL1	1
93	ABL2	1
94	ABLIM1	1
95	ABLIM2	1
96	ABLIM3	1
97	ABO	1
98	ABP1	8.484929e-02
99	ABR	1
100	ABRA	1
101	ABT1	1
102	ABTB1	1
103	ABTB2	1
104	ACAA1	1
105	ACAA2	1
106	ACACA	2.806952e-01
107	ACACB	5.885254e-01
108	ACAD10	3.070900e-01
109	ACAD11	1
110	ACAD8	1
111	ACAD9	1
112	ACADL	1
113	ACADM	1
114	ACADS	1.427529e-01
115	ACADSB	1
116	ACADVL	1
117	ACAN	7.828469e-02
118	ACAP1	1.273142e-01
119	ACAP2	1
120	ACAP3	1
121	ACAT1	8.665938e-02
122	ACAT2	1
123	ACBD3	1
124	ACBD4	1
125	ACBD5	1.709603e-01
126	ACBD6	1
127	ACBD7	3.564961e-03
128	ACCN1	1.423890e-01
129	ACCN2	5.519649e-02
130	ACCN3	1
131	ACCN4	1.076479e-01
132	ACCN5	1
133	ACCS	1
134	ACCSL	1
135	ACD	1
136	ACE	3.105670e-01
137	ACE2	1
138	ACER1	1
139	ACER2	1
140	ACER3	2.235574e-02
141	ACHE	1
142	ACIN1	1
143	ACLY	1
144	ACMSD	1
145	ACN9	1
146	ACO1	1
147	ACO2	1
148	ACOT1	1
149	ACOT11	1
150	ACOT12	1
151	ACOT13	1
152	ACOT2	1
153	ACOT4	1
154	ACOT6	1
155	ACOT7	1
156	ACOT8	1
157	ACOT9	1
158	ACOX1	1
159	ACOX2	1
160	ACOX3	1.768342e-01
161	ACOXL	1
162	ACP1	1
163	ACP2	1
164	ACP5	1
165	ACP6	1
166	ACPL2	1
167	ACPP	1
168	ACPT	1
169	ACR	1
170	ACRBP	1
171	ACRC	1
172	ACRV1	1
173	ACSBG1	1
174	ACSBG2	1
175	ACSF2	1
In gene ACSF3 the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 1762    n = 1	mu =   9.08e-07
176	ACSF3	1.987315e-01
177	ACSL1	1
178	ACSL3	1
179	ACSL4	1
180	ACSL5	1
181	ACSL6	1
Done

Running MutSig 2:
Scatter job 2: processing genes 92 - 181
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ACAN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.114250e-02	ci left: 2.823074e-01	ci right 3.002143e-01	k: 2912	n:10000
Cons ci ratio: 7.037302e-02	ci left: 2.283967e-01	ci right 2.451569e-01	k: 2367	n:10000
KS ci ratio: 2.422036e-02	ci left: 7.148214e-01	ci right 7.324482e-01	k: 7237	n:10000
ACAN   10000 perm   2 sec   (4136 perm/sec)   p_kst 7.237000e-01   p_cons 2.367000e-01   p_joint 2.912000e-01

Outputting figure to mutsig2_images.part000000000002/ACAN.2_7661_10000_0.7237_0.2367_0.2912.png
                gene_name: ACAN
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000002
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 2 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1727>
Subject: Job 9876904: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1727>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000003> was used as the working directory.
Started at Fri Oct  5 22:22:56 2012
Results reported at Fri Oct  5 22:24:44 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000003.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000003.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 3  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000003.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     98.62 sec.
    Max Memory :      2243 MB
    Max Swap   :      4771 MB

    Max Processes  :         7
    Max Threads    :        71

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
3
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 3
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 3: processing genes 182 - 272
Calculating significance of each gene.
Using projection method.
182	ACSM1	1
183	ACSM2A	1
184	ACSM2B	1.767959e-01
185	ACSM3	1.879182e-01
186	ACSM4	1
187	ACSM5	1
188	ACSS1	1
189	ACSS2	1
190	ACSS3	1
191	ACTA1	1
192	ACTA2	1
193	ACTB	1
194	ACTBL2	4.945028e-02
195	ACTC1	1.207966e-01
196	ACTG1	6.775189e-02
197	ACTG2	1
198	ACTL6A	1
199	ACTL6B	1
200	ACTL7A	1
201	ACTL7B	1
202	ACTL8	1
203	ACTL9	1
204	ACTN1	1
205	ACTN2	1
206	ACTN3	1
207	ACTN4	1
208	ACTR10	1
209	ACTR1A	1
210	ACTR1B	1
211	ACTR2	1
212	ACTR3	1
213	ACTR3B	1
214	ACTR3C	1
215	ACTR5	1
216	ACTR6	1
217	ACTR8	2.897054e-03
218	ACTRT1	1
219	ACTRT2	1
220	ACVR1	1
221	ACVR1B	1.778872e-01
222	ACVR1C	1
223	ACVR2A	4.084631e-02
224	ACVR2B	1
225	ACVRL1	1.535243e-01
226	ACY1	1
227	ACY3	9.822626e-02
228	ACYP1	1
229	ACYP2	1
230	ADA	1.033732e-01
231	ADAD1	1
232	ADAD2	1.636816e-01
233	ADAL	1
234	ADAM10	8.420564e-02
235	ADAM11	2.680853e-01
236	ADAM12	2.635217e-01
In gene ADAM15 the following bins exceed PROBCAP:
    PRAD-CH-5772	categ 6	N = 2525    n = 1	mu =   3.94e-07
237	ADAM15	1.466338e-01
238	ADAM17	1
239	ADAM18	1
240	ADAM19	1
241	ADAM2	1
242	ADAM20	2.244369e-01
243	ADAM21	1
244	ADAM22	1
245	ADAM23	6.887990e-02
246	ADAM28	1
247	ADAM29	1.896148e-02
248	ADAM30	1
249	ADAM32	1
250	ADAM33	1
251	ADAM7	1
252	ADAM8	1
253	ADAM9	1.956767e-01
254	ADAMDEC1	1
255	ADAMTS1	1.738078e-01
256	ADAMTS10	1
257	ADAMTS12	1
258	ADAMTS13	6.426176e-02
259	ADAMTS14	1.580605e-01
260	ADAMTS15	2.370552e-01
261	ADAMTS16	1
262	ADAMTS17	1
263	ADAMTS18	1
264	ADAMTS19	9.320072e-03
265	ADAMTS2	1.499720e-01
266	ADAMTS20	1
267	ADAMTS3	2.878344e-01
268	ADAMTS4	1
269	ADAMTS5	2.673218e-01
270	ADAMTS6	1
271	ADAMTS7	1
272	ADAMTS8	1
Done

Running MutSig 2:
Scatter job 3: processing genes 182 - 272
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ACTR8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.936779e-02	ci left: 7.958786e-01	ci right 8.115441e-01	k: 8038	n:10000
KS ci ratio: 1.074355e-02	ci left: 9.250294e-01	ci right 9.351183e-01	k: 9302	n:10000
ACTR8   10000 perm   2 sec   (5227 perm/sec)   p_kst 9.302000e-01   p_cons 8.038000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000003/ACTR8.2_1927_10000_0.9302_0.8038_1.png
                gene_name: ACTR8
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 20 percent done.
ADAM29
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.825522e-02	ci left: 8.141562e-01	ci right 8.292559e-01	k: 8218	n:10000
KS ci ratio: 4.316395e-02	ci left: 4.421108e-01	ci right 4.617172e-01	k: 4519	n:10000
ADAM29   10000 perm   1 sec   (6778 perm/sec)   p_kst 4.519000e-01   p_cons 8.218000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000003/ADAM29.2_2467_10000_0.4519_0.8218_1.png
                gene_name: ADAM29
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
ADAMTS13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.707822e-02	ci left: 8.331748e-01	ci right 8.476263e-01	k: 8405	n:10000
KS ci ratio: 3.432174e-02	ci left: 5.562179e-01	ci right 5.757437e-01	k: 5660	n:10000
ADAMTS13   10000 perm   2 sec   (6014 perm/sec)   p_kst 5.660000e-01   p_cons 8.405000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000003/ADAMTS13.2_4400_10000_0.566_0.8405_1.png
                gene_name: ADAMTS13
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
ADAMTS19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.264263e-01	ci left: 8.212963e-02	ci right 9.331191e-02	k: 876	n:10000
Cons ci ratio: 2.288572e-01	ci left: 2.523219e-02	ci right 3.184628e-02	k: 284	n:10000
KS ci ratio: 9.663204e-02	ci left: 1.344301e-01	ci right 1.481796e-01	k: 1412	n:10000
ADAMTS19   10000 perm   2 sec   (6222 perm/sec)   p_kst 1.412000e-01   p_cons 2.840000e-02   p_joint 8.760000e-02

Joint ci ratio: 1.645238e-01	ci left: 2.532545e-02	ci right 2.991327e-02	k: 551	n:20000
Cons ci ratio: 1.814617e-01	ci left: 2.072815e-02	ci right 2.491218e-02	k: 455	n:20000
KS ci ratio: 6.891355e-02	ci left: 1.344303e-01	ci right 1.440748e-01	k: 2784	n:20000
ADAMTS19   20000 perm   4 sec   (5603 perm/sec)   p_kst 1.392000e-01   p_cons 2.275000e-02   p_joint 2.755000e-02

Joint ci ratio: 1.412388e-01	ci left: 2.326276e-02	ci right 2.683003e-02	k: 750	n:30000
Cons ci ratio: 1.450478e-01	ci left: 2.204044e-02	ci right 2.551929e-02	k: 712	n:30000
KS ci ratio: 5.600737e-02	ci left: 1.364213e-01	ci right 1.443152e-01	k: 4210	n:30000
ADAMTS19   30000 perm   6 sec   (5322 perm/sec)   p_kst 1.403333e-01   p_cons 2.373333e-02   p_joint 2.500000e-02

Joint ci ratio: 1.181094e-01	ci left: 2.521499e-02	ci right 2.840421e-02	k: 1071	n:40000
Cons ci ratio: 1.254580e-01	ci left: 2.232840e-02	ci right 2.534127e-02	k: 952	n:40000
KS ci ratio: 4.855761e-02	ci left: 1.366875e-01	ci right 1.435148e-01	k: 5603	n:40000
ADAMTS19   40000 perm   8 sec   (5168 perm/sec)   p_kst 1.400750e-01   p_cons 2.380000e-02   p_joint 2.677500e-02

Joint ci ratio: 1.073399e-01	ci left: 2.458376e-02	ci right 2.739164e-02	k: 1298	n:50000
Cons ci ratio: 1.127110e-01	ci left: 2.228716e-02	ci right 2.496854e-02	k: 1180	n:50000
KS ci ratio: 4.341691e-02	ci left: 1.371281e-01	ci right 1.432338e-01	k: 7008	n:50000
ADAMTS19   50000 perm   10 sec   (5051 perm/sec)   p_kst 1.401600e-01   p_cons 2.360000e-02   p_joint 2.596000e-02

Joint ci ratio: 1.279607e-01	ci left: 1.441373e-02	ci right 1.640021e-02	k: 923	n:60000
Cons ci ratio: 1.023082e-01	ci left: 2.266010e-02	ci right 2.511958e-02	k: 1432	n:60000
KS ci ratio: 3.962531e-02	ci left: 1.374476e-01	ci right 1.430206e-01	k: 8413	n:60000
ADAMTS19   60000 perm   12 sec   (4944 perm/sec)   p_kst 1.402167e-01   p_cons 2.386667e-02   p_joint 1.538333e-02

Joint ci ratio: 1.174221e-01	ci left: 1.475046e-02	ci right 1.660429e-02	k: 1096	n:70000
Cons ci ratio: 9.399680e-02	ci left: 2.310215e-02	ci right 2.539466e-02	k: 1696	n:70000
KS ci ratio: 3.657406e-02	ci left: 1.383871e-01	ci right 1.435570e-01	k: 9867	n:70000
ADAMTS19   70000 perm   14 sec   (4844 perm/sec)   p_kst 1.409571e-01   p_cons 2.422857e-02   p_joint 1.565714e-02

Joint ci ratio: 1.187522e-01	ci left: 1.263894e-02	ci right 1.424663e-02	k: 1074	n:80000
Cons ci ratio: 8.772756e-02	ci left: 2.328072e-02	ci right 2.542896e-02	k: 1947	n:80000
KS ci ratio: 3.421142e-02	ci left: 1.385579e-01	ci right 1.433931e-01	k: 11277	n:80000
ADAMTS19   80000 perm   17 sec   (4749 perm/sec)   p_kst 1.409625e-01   p_cons 2.433750e-02   p_joint 1.342500e-02

Joint ci ratio: 1.074722e-01	ci left: 1.378322e-02	ci right 1.535940e-02	k: 1310	n:90000
Cons ci ratio: 8.245047e-02	ci left: 2.348890e-02	ci right 2.551968e-02	k: 2204	n:90000
KS ci ratio: 3.237637e-02	ci left: 1.377943e-01	ci right 1.423400e-01	k: 12605	n:90000
ADAMTS19   90000 perm   19 sec   (4659 perm/sec)   p_kst 1.400556e-01   p_cons 2.448889e-02   p_joint 1.455556e-02

Joint ci ratio: 1.073857e-01	ci left: 1.244336e-02	ci right 1.386508e-02	k: 1314	n:100000
Cons ci ratio: 7.766872e-02	ci left: 2.387436e-02	ci right 2.581334e-02	k: 2483	n:100000
KS ci ratio: 3.071196e-02	ci left: 1.379343e-01	ci right 1.422466e-01	k: 14008	n:100000
ADAMTS19   100000 perm   22 sec   (4513 perm/sec)   p_kst 1.400800e-01   p_cons 2.483000e-02   p_joint 1.314000e-02

Joint ci ratio: 1.023704e-01	ci left: 1.248069e-02	ci right 1.383607e-02	k: 1446	n:110000
Cons ci ratio: 7.387976e-02	ci left: 2.403181e-02	ci right 2.588426e-02	k: 2744	n:110000
KS ci ratio: 2.928592e-02	ci left: 1.380086e-01	ci right 1.421194e-01	k: 15406	n:110000
ADAMTS19   110000 perm   25 sec   (4438 perm/sec)   p_kst 1.400545e-01   p_cons 2.494545e-02   p_joint 1.314545e-02

Joint ci ratio: 1.022130e-01	ci left: 1.148905e-02	ci right 1.273469e-02	k: 1452	n:120000
Cons ci ratio: 7.089913e-02	ci left: 2.396019e-02	ci right 2.572954e-02	k: 2980	n:120000
KS ci ratio: 2.798943e-02	ci left: 1.385218e-01	ci right 1.424622e-01	k: 16858	n:120000
ADAMTS19   120000 perm   27 sec   (4379 perm/sec)   p_kst 1.404833e-01   p_cons 2.483333e-02   p_joint 1.210000e-02

Joint ci ratio: 9.773541e-02	ci left: 1.162532e-02	ci right 1.282736e-02	k: 1588	n:130000
Cons ci ratio: 6.799276e-02	ci left: 2.408242e-02	ci right 2.578501e-02	k: 3240	n:130000
KS ci ratio: 2.684344e-02	ci left: 1.390282e-01	ci right 1.428186e-01	k: 18319	n:130000
ADAMTS19   130000 perm   30 sec   (4305 perm/sec)   p_kst 1.409154e-01   p_cons 2.492308e-02   p_joint 1.221538e-02

Outputting figure to mutsig2_images.part000000000003/ADAMTS19.2_3716_130000_0.14092_0.024923_0.012215.png
                gene_name: ADAMTS19
               theta_stop: 0.098 
                    nperm: 130000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 80 percent done.
ADAMTS7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.439601e-02	ci left: 7.118940e-01	ci right 7.295772e-01	k: 7208	n:10000
Cons ci ratio: 2.281275e-02	ci left: 7.383583e-01	ci right 7.554977e-01	k: 7470	n:10000
KS ci ratio: 4.140372e-02	ci left: 4.627741e-01	ci right 4.824419e-01	k: 4726	n:10000
ADAMTS7   10000 perm   2 sec   (5935 perm/sec)   p_kst 4.726000e-01   p_cons 7.470000e-01   p_joint 7.208000e-01

Outputting figure to mutsig2_images.part000000000003/ADAMTS7.2_5157_10000_0.4726_0.747_0.7208.png
                gene_name: ADAMTS7
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000003
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 3 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1652>
Subject: Job 9876914: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1652>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000004> was used as the working directory.
Started at Fri Oct  5 22:23:17 2012
Results reported at Fri Oct  5 22:25:53 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000004.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000004.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 4  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000004.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    156.75 sec.
    Max Memory :      2076 MB
    Max Swap   :      4674 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
4
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 4
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 4: processing genes 273 - 363
Calculating significance of each gene.
Using projection method.
In gene ADAMTS9 the following bins exceed PROBCAP:
    PRAD-EJ-5510	categ 6	N = 5845    n = 1	mu =   1.34e-07
273	ADAMTS9	1.935541e-01
274	ADAMTSL1	4.536745e-02
275	ADAMTSL2	1
276	ADAMTSL3	1
277	ADAMTSL4	1
278	ADAMTSL5	1.139709e-01
279	ADAP1	1
280	ADAP2	1
281	ADAR	1
282	ADARB1	1
283	ADARB2	1
284	ADAT1	1
285	ADAT2	1
286	ADAT3	1
287	ADC	1
288	ADCK1	1
289	ADCK2	1
290	ADCK4	1
291	ADCK5	1.284594e-01
292	ADCY1	1
293	ADCY10	1
294	ADCY2	1
295	ADCY3	1
296	ADCY4	1
297	ADCY5	1
298	ADCY6	1.653467e-01
299	ADCY7	1
300	ADCY8	1
301	ADCY9	3.588347e-01
302	ADCYAP1	1
303	ADCYAP1R1	1
304	ADD1	1
305	ADD2	1
306	ADD3	1
307	ADH1A	1
308	ADH1B	1.018854e-01
309	ADH1C	1
310	ADH4	1
311	ADH5	1
312	ADH6	1
313	ADH7	1
314	ADHFE1	1
315	ADI1	1
316	ADIG	1
317	ADIPOQ	1
318	ADIPOR1	1
319	ADIPOR2	1
320	ADK	1
321	ADM	1
322	ADM2	1
323	ADNP	4.039287e-02
324	ADNP2	1.271852e-01
325	ADO	1
326	ADORA1	1
327	ADORA2A	1
328	ADORA2B	1
329	ADORA3	1
330	ADPGK	1
331	ADPRH	1
332	ADPRHL1	1
333	ADPRHL2	1
334	ADRA1A	1.604467e-01
335	ADRA1B	1
336	ADRA1D	8.373589e-02
337	ADRA2A	2.261507e-02
338	ADRA2B	1
339	ADRA2C	1
340	ADRB1	1
341	ADRB2	1
342	ADRB3	1
343	ADRBK1	1
344	ADRBK2	1
345	ADRM1	1
346	ADSL	1
347	ADSS	1
348	ADSSL1	1
349	AEBP1	1
350	AEBP2	1
351	AEN	1
352	AES	1
353	AFAP1	1
354	AFAP1L1	1
355	AFAP1L2	1
356	AFF1	1
357	AFF2	2.536249e-01
358	AFF3	2.340320e-01
359	AFF4	1
360	AFG3L2	3.274568e-02
361	AFM	1
362	AFMID	1
363	AFP	1
Done

Running MutSig 2:
Scatter job 4: processing genes 273 - 363
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ADAMTSL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.319447e-01	ci left: 7.572512e-02	ci right 8.652038e-02	k: 810	n:10000
Cons ci ratio: 2.022577e-01	ci left: 3.252956e-02	ci right 3.994377e-02	k: 361	n:10000
KS ci ratio: 5.715629e-02	ci left: 3.106623e-01	ci right 3.290427e-01	k: 3198	n:10000
ADAMTSL1   10000 perm   2 sec   (4197 perm/sec)   p_kst 3.198000e-01   p_cons 3.610000e-02   p_joint 8.100000e-02

Joint ci ratio: 7.773546e-02	ci left: 1.083981e-01	ci right 1.172148e-01	k: 2255	n:20000
Cons ci ratio: 1.414078e-01	ci left: 3.437815e-02	ci right 3.965756e-02	k: 739	n:20000
KS ci ratio: 4.058812e-02	ci left: 3.115477e-01	ci right 3.245053e-01	k: 6360	n:20000
ADAMTSL1   20000 perm   9 sec   (2121 perm/sec)   p_kst 3.180000e-01   p_cons 3.695000e-02   p_joint 1.127500e-01

Joint ci ratio: 6.232473e-02	ci left: 1.128573e-01	ci right 1.201505e-01	k: 3494	n:30000
Cons ci ratio: 1.158397e-01	ci left: 3.463305e-02	ci right 3.892393e-02	k: 1102	n:30000
KS ci ratio: 3.297148e-02	ci left: 3.149547e-01	ci right 3.255468e-01	k: 9607	n:30000
ADAMTSL1   30000 perm   12 sec   (2460 perm/sec)   p_kst 3.202333e-01   p_cons 3.673333e-02   p_joint 1.164667e-01

Joint ci ratio: 5.778545e-02	ci left: 1.001857e-01	ci right 1.061720e-01	k: 4126	n:40000
Cons ci ratio: 1.012776e-01	ci left: 3.426880e-02	ci right 3.794894e-02	k: 1443	n:40000
KS ci ratio: 2.852575e-02	ci left: 3.161017e-01	ci right 3.252743e-01	k: 12827	n:40000
ADAMTSL1   40000 perm   15 sec   (2673 perm/sec)   p_kst 3.206750e-01   p_cons 3.607500e-02   p_joint 1.031500e-01

Joint ci ratio: 5.905696e-02	ci left: 7.858345e-02	ci right 8.338533e-02	k: 4048	n:50000
Cons ci ratio: 9.145655e-02	ci left: 3.381686e-02	ci right 3.707736e-02	k: 1771	n:50000
KS ci ratio: 2.555996e-02	ci left: 3.158121e-01	ci right 3.240088e-01	k: 15995	n:50000
ADAMTSL1   50000 perm   18 sec   (2827 perm/sec)   p_kst 3.199000e-01   p_cons 3.542000e-02   p_joint 8.096000e-02

Outputting figure to mutsig2_images.part000000000004/ADAMTSL1.2_5409_50000_0.3199_0.03542_0.08096.png
                gene_name: ADAMTSL1
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.035 
      ci_cons_bounds_left: 0.034 
     ci_cons_bounds_right: 0.037 
                  p_joint: 0.081 
     ci_joint_bounds_left: 0.079 
    ci_joint_bounds_right: 0.083 

Current progress: 33 percent done.
ADNP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.772336e-02	ci left: 8.227970e-01	ci right 8.376101e-01	k: 8303	n:10000
KS ci ratio: 2.103697e-02	ci left: 7.681038e-01	ci right 7.845349e-01	k: 7764	n:10000
ADNP   10000 perm   2 sec   (4734 perm/sec)   p_kst 7.764000e-01   p_cons 8.303000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/ADNP.2_3321_10000_0.7764_0.8303_1.png
                gene_name: ADNP
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
AFG3L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.513967e-02	ci left: 1.674016e-01	ci right 1.823882e-01	k: 1748	n:10000
Cons ci ratio: 2.937057e-01	ci left: 1.492852e-02	ci right 2.015795e-02	k: 174	n:10000
KS ci ratio: 2.317481e-02	ci left: 7.322943e-01	ci right 7.495652e-01	k: 7410	n:10000
AFG3L2   10000 perm   2 sec   (5587 perm/sec)   p_kst 7.410000e-01   p_cons 1.740000e-02   p_joint 1.748000e-01

Joint ci ratio: 7.220088e-02	ci left: 1.237929e-01	ci right 1.331154e-01	k: 2568	n:20000
Cons ci ratio: 2.117242e-01	ci left: 1.506432e-02	ci right 1.867810e-02	k: 336	n:20000
KS ci ratio: 1.658367e-02	ci left: 7.302348e-01	ci right 7.424964e-01	k: 14728	n:20000
AFG3L2   20000 perm   4 sec   (4916 perm/sec)   p_kst 7.364000e-01   p_cons 1.680000e-02   p_joint 1.284000e-01

Joint ci ratio: 7.560695e-02	ci left: 7.911578e-02	ci right 8.536540e-02	k: 2466	n:30000
Cons ci ratio: 1.784295e-01	ci left: 1.441927e-02	ci right 1.727561e-02	k: 474	n:30000
KS ci ratio: 1.355336e-02	ci left: 7.310061e-01	ci right 7.410148e-01	k: 22081	n:30000
AFG3L2   30000 perm   7 sec   (4570 perm/sec)   p_kst 7.360333e-01   p_cons 1.580000e-02   p_joint 8.220000e-02

Joint ci ratio: 7.992510e-02	ci left: 5.445335e-02	ci right 5.901126e-02	k: 2268	n:40000
Cons ci ratio: 1.565895e-01	ci left: 1.421605e-02	ci right 1.665503e-02	k: 616	n:40000
KS ci ratio: 1.179297e-02	ci left: 7.298415e-01	ci right 7.385245e-01	k: 29368	n:40000
AFG3L2   40000 perm   9 sec   (4489 perm/sec)   p_kst 7.342000e-01   p_cons 1.540000e-02   p_joint 5.670000e-02

Joint ci ratio: 5.225005e-02	ci left: 9.853014e-02	ci right 1.038363e-01	k: 5058	n:50000
Cons ci ratio: 1.403589e-01	ci left: 1.428095e-02	ci right 1.645584e-02	k: 767	n:50000
KS ci ratio: 1.061230e-02	ci left: 7.279135e-01	ci right 7.356996e-01	k: 36591	n:50000
AFG3L2   50000 perm   11 sec   (4435 perm/sec)   p_kst 7.318200e-01   p_cons 1.534000e-02   p_joint 1.011600e-01

Joint ci ratio: 6.528424e-02	ci left: 5.482982e-02	ci right 5.854654e-02	k: 3400	n:60000
Cons ci ratio: 1.277502e-01	ci left: 1.446215e-02	ci right 1.645178e-02	k: 926	n:60000
KS ci ratio: 9.674587e-03	ci left: 7.287879e-01	ci right 7.358896e-01	k: 43941	n:60000
AFG3L2   60000 perm   15 sec   (4105 perm/sec)   p_kst 7.323500e-01   p_cons 1.543333e-02   p_joint 5.666667e-02

Joint ci ratio: 4.770544e-02	ci left: 8.586893e-02	ci right 9.007958e-02	k: 6157	n:70000
Cons ci ratio: 1.186925e-01	ci left: 1.443145e-02	ci right 1.626619e-02	k: 1073	n:70000
KS ci ratio: 8.958403e-03	ci left: 7.289890e-01	ci right 7.355632e-01	k: 51260	n:70000
AFG3L2   70000 perm   17 sec   (4016 perm/sec)   p_kst 7.322857e-01   p_cons 1.532857e-02   p_joint 8.795714e-02

Joint ci ratio: 6.200186e-02	ci left: 4.611012e-02	ci right 4.907280e-02	k: 3806	n:80000
Cons ci ratio: 1.116954e-01	ci left: 1.431493e-02	ci right 1.602049e-02	k: 1212	n:80000
KS ci ratio: 8.377114e-03	ci left: 7.293302e-01	ci right 7.354780e-01	k: 58593	n:80000
AFG3L2   80000 perm   20 sec   (3954 perm/sec)   p_kst 7.324125e-01   p_cons 1.515000e-02   p_joint 4.757500e-02

Joint ci ratio: 5.866389e-02	ci left: 4.587836e-02	ci right 4.866202e-02	k: 4253	n:90000
Cons ci ratio: 1.054105e-01	ci left: 1.433502e-02	ci right 1.594090e-02	k: 1361	n:90000
KS ci ratio: 7.897602e-03	ci left: 7.295281e-01	ci right 7.353236e-01	k: 65919	n:90000
AFG3L2   90000 perm   23 sec   (3892 perm/sec)   p_kst 7.324333e-01   p_cons 1.512222e-02   p_joint 4.725556e-02

Joint ci ratio: 5.576916e-02	ci left: 4.576550e-02	ci right 4.840085e-02	k: 4707	n:100000
Cons ci ratio: 9.954582e-02	ci left: 1.450931e-02	ci right 1.603900e-02	k: 1526	n:100000
KS ci ratio: 7.508065e-03	ci left: 7.288519e-01	ci right 7.343547e-01	k: 73161	n:100000
AFG3L2   100000 perm   26 sec   (3850 perm/sec)   p_kst 7.316100e-01   p_cons 1.526000e-02   p_joint 4.707000e-02

Outputting figure to mutsig2_images.part000000000004/AFG3L2.2_2462_100000_0.73161_0.01526_0.04707.png
                gene_name: AFG3L2
               theta_stop: 0.100 
                    nperm: 100000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.047 
     ci_joint_bounds_left: 0.046 
    ci_joint_bounds_right: 0.048 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000004
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 4 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1729>
Subject: Job 9876917: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1729>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000005> was used as the working directory.
Started at Fri Oct  5 22:23:17 2012
Results reported at Sat Oct  6 01:06:19 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000005.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000005.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 5  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000005.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   9652.34 sec.
    Max Memory :      2182 MB
    Max Swap   :      4812 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
5
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 5
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 5: processing genes 364 - 453
Calculating significance of each gene.
Using projection method.
364	AFTPH	1
365	AGA	1
366	AGAP1	1
367	AGAP11	1
368	AGAP2	1
369	AGAP3	1
370	AGAP4	1
371	AGAP5	1
372	AGAP6	2.486855e-02
373	AGAP7	1
374	AGAP8	1
375	AGBL1	1
376	AGBL2	1
377	AGBL4	1
378	AGBL5	1
379	AGER	1
380	AGFG1	6.255285e-02
381	AGFG2	1
382	AGGF1	4.752750e-02
In gene AGK the following bins exceed PROBCAP:
    PRAD-EJ-5512	categ 6	N = 1317    n = 1	mu =   1.66e-07
383	AGK	2.504342e-02
384	AGL	2.629505e-01
385	AGMAT	1
386	AGPAT1	1
387	AGPAT2	8.160228e-02
388	AGPAT3	9.174928e-02
389	AGPAT4	1
390	AGPAT5	1
391	AGPAT6	1
392	AGPAT9	1
393	AGPHD1	1
394	AGPS	1
395	AGR2	1
396	AGR3	1
397	AGRN	1
398	AGRP	1
399	AGT	6.399946e-04
400	AGTPBP1	1
401	AGTR1	1.032310e-01
402	AGTR2	1
403	AGTRAP	1
404	AGXT	1
405	AGXT2	1
406	AGXT2L1	1
407	AGXT2L2	1
408	AHCTF1	1
409	AHCY	1
410	AHCYL1	1
411	AHCYL2	1
412	AHDC1	1
413	AHI1	1
414	AHNAK	8.213651e-01
415	AHNAK2	2.386436e-02
416	AHR	1
417	AHRR	1
418	AHSA1	1
419	AHSA2	1
420	AHSG	1
421	AHSP	1
422	AICDA	1
423	AIDA	1
424	AIF1	1
425	AIF1L	1
426	AIFM1	1
427	AIFM2	1
428	AIFM3	1.668563e-01
429	AIG1	1
430	AIM1	3.803856e-01
431	AIM1L	1
In gene AIM2 the following bins exceed PROBCAP:
    PRAD-EJ-5517	categ 6	N = 1052    n = 1	mu =   1.98e-07
432	AIM2	1.539078e-04
433	AIMP1	1
434	AIMP2	1
435	AIP	1
436	AIPL1	1
437	AIRE	1
438	AJAP1	1
439	AK1	1
440	AK2	1
441	AK3	1
442	AK3L1	1
443	AK5	1
444	AK7	6.001242e-02
445	AKAP1	1
446	AKAP10	1
447	AKAP11	1
448	AKAP12	2.661757e-01
449	AKAP13	5.813834e-01
450	AKAP14	1
451	AKAP2	1
452	AKAP3	4.051586e-02
453	AKAP4	1
Done

Running MutSig 2:
Scatter job 5: processing genes 364 - 453
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
AHNAK2
Processing conservation and coverage...
57% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.173814e-02	ci left: 3.551569e-01	ci right 3.741220e-01	k: 3646	n:10000
Cons ci ratio: 3.425892e-02	ci left: 5.571200e-01	ci right 5.766410e-01	k: 5669	n:10000
KS ci ratio: 7.170281e-02	ci left: 2.217814e-01	ci right 2.383761e-01	k: 2300	n:10000
AHNAK2   10000 perm   4 sec   (2812 perm/sec)   p_kst 2.300000e-01   p_cons 5.669000e-01   p_joint 3.646000e-01

Outputting figure to mutsig2_images.part000000000005/AHNAK2.7_17416_10000_0.23_0.5669_0.3646.png
                gene_name: AHNAK2
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 25 percent done.
AGT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.023926e-01	ci left: 7.512676e-03	ci right 1.138119e-02	k: 93	n:10000
Cons ci ratio: 2.355655e-03	ci left: 9.951357e-01	ci right 9.975609e-01	k: 9965	n:10000
KS ci ratio: 2.262761e+00	ci left: 2.422185e-05	ci right 7.222801e-04	k: 2	n:10000
AGT   10000 perm   1 sec   (7156 perm/sec)   p_kst 2.000000e-04   p_cons 9.965000e-01   p_joint 9.300000e-03

Joint ci ratio: 4.319925e-01	ci left: 3.217547e-03	ci right 5.031303e-03	k: 81	n:20000
Cons ci ratio: 1.810656e-03	ci left: 9.948027e-01	ci right 9.966486e-01	k: 19916	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
AGT   20000 perm   3 sec   (6264 perm/sec)   p_kst 5.000000e-05   p_cons 9.958000e-01   p_joint 4.050000e-03

Joint ci ratio: 4.125772e-01	ci left: 2.383134e-03	ci right 3.649489e-03	k: 89	n:30000
Cons ci ratio: 1.549560e-03	ci left: 9.945315e-01	ci right 9.961035e-01	k: 29861	n:30000
KS ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
AGT   30000 perm   5 sec   (5979 perm/sec)   p_kst 3.333333e-05   p_cons 9.953667e-01   p_joint 2.966667e-03

Joint ci ratio: 4.522124e-01	ci left: 1.452919e-03	ci right 2.321957e-03	k: 74	n:40000
Cons ci ratio: 1.350387e-03	ci left: 9.945800e-01	ci right 9.959466e-01	k: 39812	n:40000
KS ci ratio: 2.263100e+00	ci left: 6.055289e-06	ci right 1.806054e-04	k: 2	n:40000
AGT   40000 perm   7 sec   (5803 perm/sec)   p_kst 5.000000e-05   p_cons 9.953000e-01   p_joint 1.850000e-03

Joint ci ratio: 4.616391e-01	ci left: 1.109193e-03	ci right 1.790804e-03	k: 71	n:50000
Cons ci ratio: 1.260027e-03	ci left: 9.942148e-01	ci right 9.954867e-01	k: 49744	n:50000
KS ci ratio: 2.263123e+00	ci left: 4.844222e-06	ci right 1.444862e-04	k: 2	n:50000
AGT   50000 perm   9 sec   (5653 perm/sec)   p_kst 4.000000e-05   p_cons 9.948800e-01   p_joint 1.420000e-03

Joint ci ratio: 4.554059e-01	ci left: 9.537900e-04	ci right 1.529536e-03	k: 73	n:60000
Cons ci ratio: 1.164413e-03	ci left: 9.941388e-01	ci right 9.953125e-01	k: 59685	n:60000
KS ci ratio: 2.263138e+00	ci left: 4.036847e-06	ci right 1.204062e-04	k: 2	n:60000
AGT   60000 perm   11 sec   (5529 perm/sec)   p_kst 3.333333e-05   p_cons 9.947500e-01   p_joint 1.216667e-03

Joint ci ratio: 4.040427e-01	ci left: 1.072458e-03	ci right 1.627346e-03	k: 93	n:70000
Cons ci ratio: 1.094577e-03	ci left: 9.940139e-01	ci right 9.951159e-01	k: 69621	n:70000
KS ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
AGT   70000 perm   13 sec   (5407 perm/sec)   p_kst 1.428571e-05   p_cons 9.945857e-01   p_joint 1.328571e-03

Joint ci ratio: 4.152854e-01	ci left: 8.823227e-04	ci right 1.355058e-03	k: 88	n:80000
Cons ci ratio: 1.025917e-03	ci left: 9.940283e-01	ci right 9.950603e-01	k: 79565	n:80000
KS ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
AGT   80000 perm   15 sec   (5206 perm/sec)   p_kst 1.250000e-05   p_cons 9.945625e-01   p_joint 1.100000e-03

Joint ci ratio: 4.019690e-01	ci left: 8.440973e-04	ci right 1.277986e-03	k: 94	n:90000
Cons ci ratio: 9.687336e-04	ci left: 9.940414e-01	ci right 9.950152e-01	k: 89509	n:90000
KS ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
AGT   90000 perm   18 sec   (5061 perm/sec)   p_kst 1.111111e-05   p_cons 9.945444e-01   p_joint 1.044444e-03

Joint ci ratio: 3.805403e-01	ci left: 8.588738e-04	ci right 1.270948e-03	k: 105	n:100000
Cons ci ratio: 9.142222e-04	ci left: 9.941261e-01	ci right 9.950448e-01	k: 99460	n:100000
KS ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
AGT   100000 perm   20 sec   (4980 perm/sec)   p_kst 1.000000e-05   p_cons 9.946000e-01   p_joint 1.050000e-03

Joint ci ratio: 4.107558e-01	ci left: 6.579645e-04	ci right 1.005590e-03	k: 90	n:110000
Cons ci ratio: 8.760127e-04	ci left: 9.940924e-01	ci right 9.949722e-01	k: 109400	n:110000
KS ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
AGT   110000 perm   22 sec   (4899 perm/sec)   p_kst 9.090909e-06   p_cons 9.945455e-01   p_joint 8.181818e-04

Joint ci ratio: 4.408874e-01	ci left: 5.138309e-04	ci right 8.111640e-04	k: 78	n:120000
Cons ci ratio: 8.434427e-04	ci left: 9.940479e-01	ci right 9.948946e-01	k: 119338	n:120000
KS ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
AGT   120000 perm   25 sec   (4823 perm/sec)   p_kst 8.333333e-06   p_cons 9.944833e-01   p_joint 6.500000e-04

Joint ci ratio: 4.650896e-01	ci left: 4.197805e-04	ci right 6.802655e-04	k: 70	n:130000
Cons ci ratio: 8.096455e-04	ci left: 9.940749e-01	ci right 9.948874e-01	k: 129284	n:130000
KS ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
AGT   130000 perm   27 sec   (4747 perm/sec)   p_kst 7.692308e-06   p_cons 9.944923e-01   p_joint 5.384615e-04

Joint ci ratio: 4.466010e-01	ci left: 4.277328e-04	ci right 6.794202e-04	k: 76	n:140000
Cons ci ratio: 7.739966e-04	ci left: 9.941799e-01	ci right 9.949565e-01	k: 139241	n:140000
KS ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
AGT   140000 perm   30 sec   (4670 perm/sec)   p_kst 7.142857e-06   p_cons 9.945786e-01   p_joint 5.428571e-04

Joint ci ratio: 4.495394e-01	ci left: 3.933014e-04	ci right 6.267146e-04	k: 75	n:150000
Cons ci ratio: 7.434538e-04	ci left: 9.942574e-01	ci right 9.950032e-01	k: 149196	n:150000
KS ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
AGT   150000 perm   33 sec   (4598 perm/sec)   p_kst 6.666667e-06   p_cons 9.946400e-01   p_joint 5.000000e-04

Joint ci ratio: 4.381584e-01	ci left: 3.909254e-04	ci right 6.153224e-04	k: 79	n:160000
Cons ci ratio: 7.178775e-04	ci left: 9.942997e-01	ci right 9.950197e-01	k: 159147	n:160000
KS ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
AGT   160000 perm   35 sec   (4533 perm/sec)   p_kst 6.250000e-06   p_cons 9.946687e-01   p_joint 4.937500e-04

Joint ci ratio: 4.587014e-01	ci left: 3.314000e-04	ci right 5.333359e-04	k: 72	n:170000
Cons ci ratio: 6.943673e-04	ci left: 9.943433e-01	ci right 9.950396e-01	k: 169099	n:170000
KS ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
AGT   170000 perm   38 sec   (4463 perm/sec)   p_kst 5.882353e-06   p_cons 9.947000e-01   p_joint 4.235294e-04

Joint ci ratio: 4.495587e-01	ci left: 3.277484e-04	ci right 5.222677e-04	k: 75	n:180000
Cons ci ratio: 6.818506e-04	ci left: 9.942391e-01	ci right 9.949226e-01	k: 179026	n:180000
KS ci ratio: 2.771835e+00	ci left: 1.406545e-07	ci right 3.095318e-05	k: 1	n:180000
AGT   180000 perm   41 sec   (4394 perm/sec)   p_kst 5.555556e-06   p_cons 9.945889e-01   p_joint 4.166667e-04

Joint ci ratio: 4.437603e-01	ci left: 3.198402e-04	ci right 5.064838e-04	k: 77	n:190000
Cons ci ratio: 6.593832e-04	ci left: 9.943198e-01	ci right 9.949807e-01	k: 188985	n:190000
KS ci ratio: 2.771837e+00	ci left: 1.332516e-07	ci right 2.932409e-05	k: 1	n:190000
AGT   190000 perm   44 sec   (4325 perm/sec)   p_kst 5.263158e-06   p_cons 9.946579e-01   p_joint 4.052632e-04

Joint ci ratio: 4.354663e-01	ci left: 3.171875e-04	ci right 4.978103e-04	k: 80	n:200000
Cons ci ratio: 6.431486e-04	ci left: 9.943205e-01	ci right 9.949650e-01	k: 198930	n:200000
KS ci ratio: 2.771838e+00	ci left: 1.265890e-07	ci right 2.785790e-05	k: 1	n:200000
AGT   200000 perm   48 sec   (4181 perm/sec)   p_kst 5.000000e-06   p_cons 9.946500e-01   p_joint 4.000000e-04

Joint ci ratio: 4.177848e-01	ci left: 3.318388e-04	ci right 5.109952e-04	k: 87	n:210000
Cons ci ratio: 6.249641e-04	ci left: 9.943752e-01	ci right 9.950015e-01	k: 208886	n:210000
KS ci ratio: 2.771839e+00	ci left: 1.205610e-07	ci right 2.653135e-05	k: 1	n:210000
AGT   210000 perm   51 sec   (4122 perm/sec)   p_kst 4.761905e-06   p_cons 9.946952e-01   p_joint 4.142857e-04

Joint ci ratio: 4.131188e-01	ci left: 3.248954e-04	ci right 4.978048e-04	k: 89	n:220000
Cons ci ratio: 6.084647e-04	ci left: 9.944204e-01	ci right 9.950301e-01	k: 218841	n:220000
KS ci ratio: 2.771840e+00	ci left: 1.150809e-07	ci right 2.532539e-05	k: 1	n:220000
AGT   220000 perm   54 sec   (4067 perm/sec)   p_kst 4.545455e-06   p_cons 9.947318e-01   p_joint 4.045455e-04

Joint ci ratio: 4.251042e-01	ci left: 2.913218e-04	ci right 4.521443e-04	k: 84	n:230000
Cons ci ratio: 5.976191e-04	ci left: 9.943814e-01	ci right 9.949800e-01	k: 228778	n:230000
KS ci ratio: 2.771841e+00	ci left: 1.100774e-07	ci right 2.422430e-05	k: 1	n:230000
AGT   230000 perm   57 sec   (4016 perm/sec)   p_kst 4.347826e-06   p_cons 9.946870e-01   p_joint 3.652174e-04

Joint ci ratio: 4.226278e-01	ci left: 2.829052e-04	ci right 4.379142e-04	k: 85	n:240000
Cons ci ratio: 5.852268e-04	ci left: 9.943843e-01	ci right 9.949704e-01	k: 238724	n:240000
KS ci ratio: 2.771841e+00	ci left: 1.054909e-07	ci right 2.321496e-05	k: 1	n:240000
AGT   240000 perm   61 sec   (3966 perm/sec)   p_kst 4.166667e-06   p_cons 9.946833e-01   p_joint 3.541667e-04

Joint ci ratio: 4.154444e-01	ci left: 2.823236e-04	ci right 4.336561e-04	k: 88	n:250000
Cons ci ratio: 5.737912e-04	ci left: 9.943829e-01	ci right 9.949575e-01	k: 248669	n:250000
KS ci ratio: 2.771842e+00	ci left: 1.012712e-07	ci right 2.228637e-05	k: 1	n:250000
AGT   250000 perm   64 sec   (3913 perm/sec)   p_kst 4.000000e-06   p_cons 9.946760e-01   p_joint 3.520000e-04

Joint ci ratio: 4.302064e-01	ci left: 2.508424e-04	ci right 3.914606e-04	k: 82	n:260000
Cons ci ratio: 5.615697e-04	ci left: 9.944095e-01	ci right 9.949717e-01	k: 258621	n:260000
KS ci ratio: 2.771843e+00	ci left: 9.737618e-08	ci right 2.142921e-05	k: 1	n:260000
AGT   260000 perm   68 sec   (3849 perm/sec)   p_kst 3.846154e-06   p_cons 9.946962e-01   p_joint 3.153846e-04

Joint ci ratio: 4.861567e-01	ci left: 1.825520e-04	ci right 3.026811e-04	k: 64	n:270000
Cons ci ratio: 5.500902e-04	ci left: 9.944341e-01	ci right 9.949848e-01	k: 268573	n:270000
KS ci ratio: 2.771843e+00	ci left: 9.376965e-08	ci right 2.063554e-05	k: 1	n:270000
AGT   270000 perm   71 sec   (3800 perm/sec)   p_kst 3.703704e-06   p_cons 9.947148e-01   p_joint 2.370370e-04

Joint ci ratio: 4.824609e-01	ci left: 1.791674e-04	ci right 2.958757e-04	k: 65	n:280000
Cons ci ratio: 5.400150e-04	ci left: 9.944424e-01	ci right 9.949830e-01	k: 278521	n:280000
KS ci ratio: 2.771844e+00	ci left: 9.042074e-08	ci right 1.989856e-05	k: 1	n:280000
AGT   280000 perm   75 sec   (3753 perm/sec)   p_kst 3.571429e-06   p_cons 9.947179e-01   p_joint 2.321429e-04

Joint ci ratio: 4.861608e-01	ci left: 1.699619e-04	ci right 2.818071e-04	k: 64	n:290000
Cons ci ratio: 5.313433e-04	ci left: 9.944325e-01	ci right 9.949644e-01	k: 288464	n:290000
KS ci ratio: 2.771844e+00	ci left: 8.730278e-08	ci right 1.921241e-05	k: 1	n:290000
AGT   290000 perm   78 sec   (3706 perm/sec)   p_kst 3.448276e-06   p_cons 9.947034e-01   p_joint 2.206897e-04

Joint ci ratio: 4.861627e-01	ci left: 1.642964e-04	ci right 2.724139e-04	k: 64	n:300000
Cons ci ratio: 5.212553e-04	ci left: 9.944610e-01	ci right 9.949827e-01	k: 298418	n:300000
KS ci ratio: 2.771845e+00	ci left: 8.439269e-08	ci right 1.857200e-05	k: 1	n:300000
AGT   300000 perm   82 sec   (3661 perm/sec)   p_kst 3.333333e-06   p_cons 9.947267e-01   p_joint 2.133333e-04

Joint ci ratio: 4.788517e-01	ci left: 1.646630e-04	ci right 2.708573e-04	k: 66	n:310000
Cons ci ratio: 5.102889e-04	ci left: 9.945174e-01	ci right 9.950281e-01	k: 308381	n:310000
KS ci ratio: 2.771845e+00	ci left: 8.167035e-08	ci right 1.797291e-05	k: 1	n:310000
AGT   310000 perm   86 sec   (3616 perm/sec)   p_kst 3.225806e-06   p_cons 9.947774e-01   p_joint 2.129032e-04

Joint ci ratio: 4.556373e-01	ci left: 1.788177e-04	ci right 2.868245e-04	k: 73	n:320000
Cons ci ratio: 5.013069e-04	ci left: 9.945415e-01	ci right 9.950432e-01	k: 318335	n:320000
KS ci ratio: 2.771846e+00	ci left: 7.911815e-08	ci right 1.741126e-05	k: 1	n:320000
AGT   320000 perm   90 sec   (3569 perm/sec)   p_kst 3.125000e-06   p_cons 9.947969e-01   p_joint 2.281250e-04

Joint ci ratio: 4.556390e-01	ci left: 1.733989e-04	ci right 2.781331e-04	k: 73	n:330000
Cons ci ratio: 4.947980e-04	ci left: 9.945208e-01	ci right 9.950159e-01	k: 328275	n:330000
KS ci ratio: 2.771846e+00	ci left: 7.672063e-08	ci right 1.688365e-05	k: 1	n:330000
AGT   330000 perm   94 sec   (3527 perm/sec)   p_kst 3.030303e-06   p_cons 9.947727e-01   p_joint 2.212121e-04

Joint ci ratio: 4.619268e-01	ci left: 1.630964e-04	ci right 2.633953e-04	k: 71	n:340000
Cons ci ratio: 4.894882e-04	ci left: 9.944803e-01	ci right 9.949700e-01	k: 338208	n:340000
KS ci ratio: 2.771846e+00	ci left: 7.446414e-08	ci right 1.638708e-05	k: 1	n:340000
AGT   340000 perm   98 sec   (3484 perm/sec)   p_kst 2.941176e-06   p_cons 9.947294e-01   p_joint 2.088235e-04

Joint ci ratio: 4.556419e-01	ci left: 1.634902e-04	ci right 2.622402e-04	k: 73	n:350000
Cons ci ratio: 4.840537e-04	ci left: 9.944480e-01	ci right 9.949323e-01	k: 348143	n:350000
KS ci ratio: 2.771847e+00	ci left: 7.233659e-08	ci right 1.591888e-05	k: 1	n:350000
AGT   350000 perm   102 sec   (3443 perm/sec)   p_kst 2.857143e-06   p_cons 9.946943e-01   p_joint 2.085714e-04

Joint ci ratio: 4.438039e-01	ci left: 1.688013e-04	ci right 2.673173e-04	k: 77	n:360000
Cons ci ratio: 4.777747e-04	ci left: 9.944404e-01	ci right 9.949183e-01	k: 358086	n:360000
KS ci ratio: 2.771847e+00	ci left: 7.032724e-08	ci right 1.547669e-05	k: 1	n:360000
AGT   360000 perm   106 sec   (3399 perm/sec)   p_kst 2.777778e-06   p_cons 9.946833e-01   p_joint 2.138889e-04

Joint ci ratio: 4.328430e-01	ci left: 1.738569e-04	ci right 2.720890e-04	k: 81	n:370000
Cons ci ratio: 4.716117e-04	ci left: 9.944359e-01	ci right 9.949076e-01	k: 368030	n:370000
KS ci ratio: 2.771847e+00	ci left: 6.842651e-08	ci right 1.505840e-05	k: 1	n:370000
AGT   370000 perm   110 sec   (3360 perm/sec)   p_kst 2.702703e-06   p_cons 9.946757e-01   p_joint 2.189189e-04

Joint ci ratio: 4.466796e-01	ci left: 1.575804e-04	ci right 2.503235e-04	k: 76	n:380000
Cons ci ratio: 4.668338e-04	ci left: 9.944049e-01	ci right 9.948717e-01	k: 377964	n:380000
KS ci ratio: 2.771848e+00	ci left: 6.662581e-08	ci right 1.466213e-05	k: 1	n:380000
AGT   380000 perm   114 sec   (3321 perm/sec)   p_kst 2.631579e-06   p_cons 9.946421e-01   p_joint 2.000000e-04

Joint ci ratio: 4.382238e-01	ci left: 1.603751e-04	ci right 2.524490e-04	k: 79	n:390000
Cons ci ratio: 4.599665e-04	ci left: 9.944278e-01	ci right 9.948878e-01	k: 387918	n:390000
KS ci ratio: 2.771848e+00	ci left: 6.491745e-08	ci right 1.428618e-05	k: 1	n:390000
AGT   390000 perm   119 sec   (3285 perm/sec)   p_kst 2.564103e-06   p_cons 9.946615e-01   p_joint 2.025641e-04

Joint ci ratio: 4.302307e-01	ci left: 1.630458e-04	ci right 2.544528e-04	k: 82	n:400000
Cons ci ratio: 4.544573e-04	ci left: 9.944242e-01	ci right 9.948786e-01	k: 397862	n:400000
KS ci ratio: 2.771848e+00	ci left: 6.329452e-08	ci right 1.392903e-05	k: 1	n:400000
AGT   400000 perm   124 sec   (3237 perm/sec)   p_kst 2.500000e-06   p_cons 9.946550e-01   p_joint 2.050000e-04

Joint ci ratio: 4.276627e-01	ci left: 1.612447e-04	ci right 2.509475e-04	k: 83	n:410000
Cons ci ratio: 4.487291e-04	ci left: 9.944307e-01	ci right 9.948794e-01	k: 407810	n:410000
KS ci ratio: 2.771848e+00	ci left: 6.175075e-08	ci right 1.358930e-05	k: 1	n:410000
AGT   410000 perm   128 sec   (3201 perm/sec)   p_kst 2.439024e-06   p_cons 9.946585e-01   p_joint 2.024390e-04

Joint ci ratio: 4.276638e-01	ci left: 1.574054e-04	ci right 2.449727e-04	k: 83	n:420000
Cons ci ratio: 4.424168e-04	ci left: 9.944563e-01	ci right 9.948987e-01	k: 417766	n:420000
KS ci ratio: 2.771849e+00	ci left: 6.028049e-08	ci right 1.326575e-05	k: 1	n:420000
AGT   420000 perm   133 sec   (3166 perm/sec)   p_kst 2.380952e-06   p_cons 9.946810e-01   p_joint 1.976190e-04

Joint ci ratio: 4.202251e-01	ci left: 1.599772e-04	ci right 2.469926e-04	k: 86	n:430000
Cons ci ratio: 4.385644e-04	ci left: 9.944262e-01	ci right 9.948647e-01	k: 427699	n:430000
KS ci ratio: 2.771849e+00	ci left: 5.887862e-08	ci right 1.295724e-05	k: 1	n:430000
AGT   430000 perm   137 sec   (3131 perm/sec)   p_kst 2.325581e-06   p_cons 9.946488e-01   p_joint 2.000000e-04

Joint ci ratio: 4.108847e-01	ci left: 1.644818e-04	ci right 2.514152e-04	k: 90	n:440000
Cons ci ratio: 4.328544e-04	ci left: 9.944463e-01	ci right 9.948790e-01	k: 437653	n:440000
KS ci ratio: 2.771849e+00	ci left: 5.754047e-08	ci right 1.266276e-05	k: 1	n:440000
AGT   440000 perm   142 sec   (3097 perm/sec)   p_kst 2.272727e-06   p_cons 9.946659e-01   p_joint 2.045455e-04

Joint ci ratio: 4.154776e-01	ci left: 1.568441e-04	ci right 2.409244e-04	k: 88	n:450000
Cons ci ratio: 4.279854e-04	ci left: 9.944495e-01	ci right 9.948774e-01	k: 447600	n:450000
KS ci ratio: 2.771849e+00	ci left: 5.626179e-08	ci right 1.238137e-05	k: 1	n:450000
AGT   450000 perm   147 sec   (3054 perm/sec)   p_kst 2.222222e-06   p_cons 9.946667e-01   p_joint 1.955556e-04

Joint ci ratio: 6.276751e-01	ci left: 5.845947e-05	ci right 1.133851e-04	k: 38	n:460000
Cons ci ratio: 4.224960e-04	ci left: 9.944726e-01	ci right 9.948950e-01	k: 457556	n:460000
KS ci ratio: 2.771850e+00	ci left: 5.503871e-08	ci right 1.211221e-05	k: 1	n:460000
AGT   460000 perm   152 sec   (3023 perm/sec)   p_kst 2.173913e-06   p_cons 9.946870e-01   p_joint 8.260870e-05

Joint ci ratio: 6.197794e-01	ci left: 5.900663e-05	ci right 1.134329e-04	k: 39	n:470000
Cons ci ratio: 4.177120e-04	ci left: 9.944818e-01	ci right 9.948993e-01	k: 467506	n:470000
KS ci ratio: 2.771850e+00	ci left: 5.386768e-08	ci right 1.185450e-05	k: 1	n:470000
AGT   470000 perm   157 sec   (2991 perm/sec)   p_kst 2.127660e-06   p_cons 9.946936e-01   p_joint 8.297872e-05

Joint ci ratio: 6.048420e-01	ci left: 6.129715e-05	ci right 1.158756e-04	k: 41	n:480000
Cons ci ratio: 4.136571e-04	ci left: 9.944757e-01	ci right 9.948892e-01	k: 477449	n:480000
KS ci ratio: 2.771850e+00	ci left: 5.274543e-08	ci right 1.160754e-05	k: 1	n:480000
AGT   480000 perm   162 sec   (2962 perm/sec)   p_kst 2.083333e-06   p_cons 9.946854e-01   p_joint 8.541667e-05

Joint ci ratio: 5.843317e-01	ci left: 6.524659e-05	ci right 1.205450e-04	k: 44	n:490000
Cons ci ratio: 4.101905e-04	ci left: 9.944574e-01	ci right 9.948674e-01	k: 487386	n:490000
KS ci ratio: 2.771850e+00	ci left: 5.166899e-08	ci right 1.137065e-05	k: 1	n:490000
AGT   490000 perm   167 sec   (2928 perm/sec)   p_kst 2.040816e-06   p_cons 9.946653e-01   p_joint 8.979592e-05

Joint ci ratio: 5.779453e-01	ci left: 6.564735e-05	ci right 1.204252e-04	k: 45	n:500000
Cons ci ratio: 4.057337e-04	ci left: 9.944684e-01	ci right 9.948739e-01	k: 497337	n:500000
KS ci ratio: 2.771850e+00	ci left: 5.063561e-08	ci right 1.114324e-05	k: 1	n:500000
AGT   500000 perm   173 sec   (2893 perm/sec)   p_kst 2.000000e-06   p_cons 9.946740e-01   p_joint 9.000000e-05

Joint ci ratio: 5.779458e-01	ci left: 6.436013e-05	ci right 1.180640e-04	k: 45	n:510000
Cons ci ratio: 4.022354e-04	ci left: 9.944570e-01	ci right 9.948590e-01	k: 507277	n:510000
KS ci ratio: 2.771850e+00	ci left: 4.964276e-08	ci right 1.092474e-05	k: 1	n:510000
AGT   510000 perm   178 sec   (2866 perm/sec)   p_kst 1.960784e-06   p_cons 9.946608e-01   p_joint 8.823529e-05

Joint ci ratio: 5.779463e-01	ci left: 6.312243e-05	ci right 1.157936e-04	k: 45	n:520000
Cons ci ratio: 3.981750e-04	ci left: 9.944637e-01	ci right 9.948616e-01	k: 517226	n:520000
KS ci ratio: 2.771851e+00	ci left: 4.868809e-08	ci right 1.071465e-05	k: 1	n:520000
AGT   520000 perm   183 sec   (2840 perm/sec)   p_kst 1.923077e-06   p_cons 9.946654e-01   p_joint 8.653846e-05

Joint ci ratio: 5.779468e-01	ci left: 6.193142e-05	ci right 1.136088e-04	k: 45	n:530000
Cons ci ratio: 3.933223e-04	ci left: 9.944951e-01	ci right 9.948882e-01	k: 527188	n:530000
KS ci ratio: 2.771851e+00	ci left: 4.776945e-08	ci right 1.051249e-05	k: 1	n:530000
AGT   530000 perm   189 sec   (2808 perm/sec)   p_kst 1.886792e-06   p_cons 9.946943e-01   p_joint 8.490566e-05

Joint ci ratio: 5.717654e-01	ci left: 6.236692e-05	ci right 1.136235e-04	k: 46	n:540000
Cons ci ratio: 3.895216e-04	ci left: 9.945009e-01	ci right 9.948901e-01	k: 537137	n:540000
KS ci ratio: 2.771851e+00	ci left: 4.688483e-08	ci right 1.031781e-05	k: 1	n:540000
AGT   540000 perm   194 sec   (2783 perm/sec)   p_kst 1.851852e-06   p_cons 9.946981e-01   p_joint 8.518519e-05

Joint ci ratio: 5.717658e-01	ci left: 6.123296e-05	ci right 1.115576e-04	k: 46	n:550000
Cons ci ratio: 3.864271e-04	ci left: 9.944898e-01	ci right 9.948759e-01	k: 547077	n:550000
KS ci ratio: 2.771851e+00	ci left: 4.603238e-08	ci right 1.013022e-05	k: 1	n:550000
AGT   550000 perm   199 sec   (2757 perm/sec)   p_kst 1.818182e-06   p_cons 9.946855e-01   p_joint 8.363636e-05

Joint ci ratio: 5.717663e-01	ci left: 6.013950e-05	ci right 1.095656e-04	k: 46	n:560000
Cons ci ratio: 3.836614e-04	ci left: 9.944718e-01	ci right 9.948552e-01	k: 557013	n:560000
KS ci ratio: 2.771851e+00	ci left: 4.521037e-08	ci right 9.949323e-06	k: 1	n:560000
AGT   560000 perm   205 sec   (2730 perm/sec)   p_kst 1.785714e-06   p_cons 9.946661e-01   p_joint 8.214286e-05

Joint ci ratio: 5.843355e-01	ci left: 5.608908e-05	ci right 1.036266e-04	k: 44	n:570000
Cons ci ratio: 3.805728e-04	ci left: 9.944652e-01	ci right 9.948455e-01	k: 566955	n:570000
KS ci ratio: 2.771851e+00	ci left: 4.441721e-08	ci right 9.774774e-06	k: 1	n:570000
AGT   570000 perm   211 sec   (2705 perm/sec)   p_kst 1.754386e-06   p_cons 9.946579e-01   p_joint 7.719298e-05

Joint ci ratio: 5.779490e-01	ci left: 5.659246e-05	ci right 1.038151e-04	k: 45	n:580000
Cons ci ratio: 3.771285e-04	ci left: 9.944712e-01	ci right 9.948480e-01	k: 576904	n:580000
KS ci ratio: 2.771851e+00	ci left: 4.365139e-08	ci right 9.606244e-06	k: 1	n:580000
AGT   580000 perm   216 sec   (2681 perm/sec)   p_kst 1.724138e-06   p_cons 9.946621e-01   p_joint 7.758621e-05

Joint ci ratio: 8.001497e-01	ci left: 2.471207e-05	ci right 5.849315e-05	k: 23	n:590000
Cons ci ratio: 3.743723e-04	ci left: 9.944597e-01	ci right 9.948337e-01	k: 586843	n:590000
KS ci ratio: 2.771852e+00	ci left: 4.291154e-08	ci right 9.443427e-06	k: 1	n:590000
AGT   590000 perm   222 sec   (2657 perm/sec)   p_kst 1.694915e-06   p_cons 9.946492e-01   p_joint 3.898305e-05

Joint ci ratio: 8.001500e-01	ci left: 2.430020e-05	ci right 5.751827e-05	k: 23	n:600000
Cons ci ratio: 3.710345e-04	ci left: 9.944673e-01	ci right 9.948379e-01	k: 596793	n:600000
KS ci ratio: 2.771852e+00	ci left: 4.219635e-08	ci right 9.286037e-06	k: 1	n:600000
AGT   600000 perm   228 sec   (2628 perm/sec)   p_kst 1.666667e-06   p_cons 9.946550e-01   p_joint 3.833333e-05

Joint ci ratio: 8.001503e-01	ci left: 2.390183e-05	ci right 5.657536e-05	k: 23	n:610000
Cons ci ratio: 3.682944e-04	ci left: 9.944596e-01	ci right 9.948275e-01	k: 606734	n:610000
KS ci ratio: 2.771852e+00	ci left: 4.150460e-08	ci right 9.133807e-06	k: 1	n:610000
AGT   610000 perm   234 sec   (2605 perm/sec)   p_kst 1.639344e-06   p_cons 9.946459e-01   p_joint 3.770492e-05

Joint ci ratio: 8.001505e-01	ci left: 2.351631e-05	ci right 5.566286e-05	k: 23	n:620000
Cons ci ratio: 3.657236e-04	ci left: 9.944489e-01	ci right 9.948142e-01	k: 616673	n:620000
KS ci ratio: 2.771852e+00	ci left: 4.083517e-08	ci right 8.986488e-06	k: 1	n:620000
AGT   620000 perm   240 sec   (2579 perm/sec)   p_kst 1.612903e-06   p_cons 9.946339e-01   p_joint 3.709677e-05

Joint ci ratio: 8.992954e-01	ci left: 1.693332e-05	ci right 4.515480e-05	k: 18	n:630000
Cons ci ratio: 3.630425e-04	ci left: 9.944434e-01	ci right 9.948060e-01	k: 626615	n:630000
KS ci ratio: 2.771852e+00	ci left: 4.018700e-08	ci right 8.843846e-06	k: 1	n:630000
AGT   630000 perm   247 sec   (2553 perm/sec)   p_kst 1.587302e-06   p_cons 9.946270e-01   p_joint 2.857143e-05

Joint ci ratio: 9.507263e-01	ci left: 1.428973e-05	ci right 4.059812e-05	k: 16	n:640000
Cons ci ratio: 3.603664e-04	ci left: 9.944397e-01	ci right 9.947996e-01	k: 636558	n:640000
KS ci ratio: 2.771852e+00	ci left: 3.955907e-08	ci right 8.705662e-06	k: 1	n:640000
AGT   640000 perm   253 sec   (2532 perm/sec)   p_kst 1.562500e-06   p_cons 9.946219e-01   p_joint 2.500000e-05

Joint ci ratio: 9.507265e-01	ci left: 1.406988e-05	ci right 3.997354e-05	k: 16	n:650000
Cons ci ratio: 3.579023e-04	ci left: 9.944314e-01	ci right 9.947888e-01	k: 646498	n:650000
KS ci ratio: 2.771852e+00	ci left: 3.895047e-08	ci right 8.571729e-06	k: 1	n:650000
AGT   650000 perm   259 sec   (2510 perm/sec)   p_kst 1.538462e-06   p_cons 9.946123e-01   p_joint 2.461538e-05

Joint ci ratio: 9.507267e-01	ci left: 1.385670e-05	ci right 3.936788e-05	k: 16	n:660000
Cons ci ratio: 3.551860e-04	ci left: 9.944326e-01	ci right 9.947873e-01	k: 656444	n:660000
KS ci ratio: 2.771852e+00	ci left: 3.836031e-08	ci right 8.441855e-06	k: 1	n:660000
AGT   660000 perm   265 sec   (2489 perm/sec)   p_kst 1.515152e-06   p_cons 9.946121e-01   p_joint 2.424242e-05

Joint ci ratio: 9.507269e-01	ci left: 1.364988e-05	ci right 3.878030e-05	k: 16	n:670000
Cons ci ratio: 3.528250e-04	ci left: 9.944246e-01	ci right 9.947770e-01	k: 666384	n:670000
KS ci ratio: 2.771852e+00	ci left: 3.778777e-08	ci right 8.315857e-06	k: 1	n:670000
AGT   670000 perm   272 sec   (2466 perm/sec)   p_kst 1.492537e-06   p_cons 9.946030e-01   p_joint 2.388060e-05

Joint ci ratio: 9.799877e-01	ci left: 1.234621e-05	ci right 3.638241e-05	k: 15	n:680000
Cons ci ratio: 3.503177e-04	ci left: 9.944230e-01	ci right 9.947728e-01	k: 676328	n:680000
KS ci ratio: 2.771852e+00	ci left: 3.723207e-08	ci right 8.193566e-06	k: 1	n:680000
AGT   680000 perm   278 sec   (2447 perm/sec)   p_kst 1.470588e-06   p_cons 9.946000e-01   p_joint 2.205882e-05

Joint ci ratio: 9.799879e-01	ci left: 1.216728e-05	ci right 3.585514e-05	k: 15	n:690000
Cons ci ratio: 3.478162e-04	ci left: 9.944228e-01	ci right 9.947701e-01	k: 686273	n:690000
KS ci ratio: 2.771853e+00	ci left: 3.669247e-08	ci right 8.074819e-06	k: 1	n:690000
AGT   690000 perm   284 sec   (2428 perm/sec)   p_kst 1.449275e-06   p_cons 9.945986e-01   p_joint 2.173913e-05

Joint ci ratio: 9.799881e-01	ci left: 1.199346e-05	ci right 3.534292e-05	k: 15	n:700000
Cons ci ratio: 3.455509e-04	ci left: 9.944168e-01	ci right 9.947619e-01	k: 696214	n:700000
KS ci ratio: 2.771853e+00	ci left: 3.616830e-08	ci right 7.959465e-06	k: 1	n:700000
AGT   700000 perm   291 sec   (2407 perm/sec)   p_kst 1.428571e-06   p_cons 9.945914e-01   p_joint 2.142857e-05

Joint ci ratio: 9.799883e-01	ci left: 1.182453e-05	ci right 3.484514e-05	k: 15	n:710000
Cons ci ratio: 3.434186e-04	ci left: 9.944082e-01	ci right 9.947511e-01	k: 706153	n:710000
KS ci ratio: 2.771853e+00	ci left: 3.565888e-08	ci right 7.847360e-06	k: 1	n:710000
AGT   710000 perm   297 sec   (2387 perm/sec)   p_kst 1.408451e-06   p_cons 9.945817e-01   p_joint 2.112676e-05

Joint ci ratio: 9.507278e-01	ci left: 1.270197e-05	ci right 3.608725e-05	k: 16	n:720000
Cons ci ratio: 3.400488e-04	ci left: 9.944407e-01	ci right 9.947803e-01	k: 716121	n:720000
KS ci ratio: 2.771853e+00	ci left: 3.516362e-08	ci right 7.738369e-06	k: 1	n:720000
AGT   720000 perm   304 sec   (2367 perm/sec)   p_kst 1.388889e-06   p_cons 9.946125e-01   p_joint 2.222222e-05

Joint ci ratio: 9.507279e-01	ci left: 1.252797e-05	ci right 3.559290e-05	k: 16	n:730000
Cons ci ratio: 3.379753e-04	ci left: 9.944334e-01	ci right 9.947709e-01	k: 726061	n:730000
KS ci ratio: 2.771853e+00	ci left: 3.468193e-08	ci right 7.632364e-06	k: 1	n:730000
AGT   730000 perm   311 sec   (2344 perm/sec)   p_kst 1.369863e-06   p_cons 9.946041e-01   p_joint 2.191781e-05

Joint ci ratio: 9.507281e-01	ci left: 1.235867e-05	ci right 3.511192e-05	k: 16	n:740000
Cons ci ratio: 3.357696e-04	ci left: 9.944318e-01	ci right 9.947670e-01	k: 736005	n:740000
KS ci ratio: 2.771853e+00	ci left: 3.421325e-08	ci right 7.529225e-06	k: 1	n:740000
AGT   740000 perm   318 sec   (2325 perm/sec)   p_kst 1.351351e-06   p_cons 9.946014e-01   p_joint 2.162162e-05

Joint ci ratio: 9.507282e-01	ci left: 1.219389e-05	ci right 3.464377e-05	k: 16	n:750000
Cons ci ratio: 3.331923e-04	ci left: 9.944437e-01	ci right 9.947764e-01	k: 745959	n:750000
KS ci ratio: 2.771853e+00	ci left: 3.375708e-08	ci right 7.428835e-06	k: 1	n:750000
AGT   750000 perm   325 sec   (2304 perm/sec)   p_kst 1.333333e-06   p_cons 9.946120e-01   p_joint 2.133333e-05

Joint ci ratio: 9.507284e-01	ci left: 1.203344e-05	ci right 3.418793e-05	k: 16	n:760000
Cons ci ratio: 3.314033e-04	ci left: 9.944313e-01	ci right 9.947622e-01	k: 755895	n:760000
KS ci ratio: 2.771853e+00	ci left: 3.331290e-08	ci right 7.331088e-06	k: 1	n:760000
AGT   760000 perm   332 sec   (2286 perm/sec)   p_kst 1.315789e-06   p_cons 9.945987e-01   p_joint 2.105263e-05

Joint ci ratio: 9.507285e-01	ci left: 1.187717e-05	ci right 3.374393e-05	k: 16	n:770000
Cons ci ratio: 3.293626e-04	ci left: 9.944285e-01	ci right 9.947574e-01	k: 765838	n:770000
KS ci ratio: 2.771853e+00	ci left: 3.288027e-08	ci right 7.235879e-06	k: 1	n:770000
AGT   770000 perm   340 sec   (2268 perm/sec)   p_kst 1.298701e-06   p_cons 9.945948e-01   p_joint 2.077922e-05

Joint ci ratio: 9.507287e-01	ci left: 1.172489e-05	ci right 3.331132e-05	k: 16	n:780000
Cons ci ratio: 3.268907e-04	ci left: 9.944414e-01	ci right 9.947678e-01	k: 775793	n:780000
KS ci ratio: 2.771853e+00	ci left: 3.245873e-08	ci right 7.143112e-06	k: 1	n:780000
AGT   780000 perm   347 sec   (2250 perm/sec)   p_kst 1.282051e-06   p_cons 9.946064e-01   p_joint 2.051282e-05

Joint ci ratio: 9.507288e-01	ci left: 1.157648e-05	ci right 3.288966e-05	k: 16	n:790000
Cons ci ratio: 3.247405e-04	ci left: 9.944449e-01	ci right 9.947692e-01	k: 785741	n:790000
KS ci ratio: 2.771853e+00	ci left: 3.204786e-08	ci right 7.052693e-06	k: 1	n:790000
AGT   790000 perm   354 sec   (2234 perm/sec)   p_kst 1.265823e-06   p_cons 9.946089e-01   p_joint 2.025316e-05

Joint ci ratio: 9.507290e-01	ci left: 1.143177e-05	ci right 3.247854e-05	k: 16	n:800000
Cons ci ratio: 3.228578e-04	ci left: 9.944408e-01	ci right 9.947631e-01	k: 795683	n:800000
KS ci ratio: 2.771853e+00	ci left: 3.164726e-08	ci right 6.964534e-06	k: 1	n:800000
AGT   800000 perm   361 sec   (2217 perm/sec)   p_kst 1.250000e-06   p_cons 9.946038e-01   p_joint 2.000000e-05

Joint ci ratio: 9.507291e-01	ci left: 1.129064e-05	ci right 3.207758e-05	k: 16	n:810000
Cons ci ratio: 3.205643e-04	ci left: 9.944518e-01	ci right 9.947718e-01	k: 805637	n:810000
KS ci ratio: 2.771853e+00	ci left: 3.125655e-08	ci right 6.878553e-06	k: 1	n:810000
AGT   810000 perm   368 sec   (2200 perm/sec)   p_kst 1.234568e-06   p_cons 9.946136e-01   p_joint 1.975309e-05

Joint ci ratio: 9.507292e-01	ci left: 1.115295e-05	ci right 3.168639e-05	k: 16	n:820000
Cons ci ratio: 3.188980e-04	ci left: 9.944427e-01	ci right 9.947611e-01	k: 815575	n:820000
KS ci ratio: 2.771854e+00	ci left: 3.087538e-08	ci right 6.794668e-06	k: 1	n:820000
AGT   820000 perm   376 sec   (2183 perm/sec)   p_kst 1.219512e-06   p_cons 9.946037e-01   p_joint 1.951220e-05

Joint ci ratio: 1.012130e+00	ci left: 9.221632e-06	ci right 2.830059e-05	k: 14	n:830000
Cons ci ratio: 3.168297e-04	ci left: 9.944486e-01	ci right 9.947648e-01	k: 825525	n:830000
KS ci ratio: 2.771854e+00	ci left: 3.050338e-08	ci right 6.712805e-06	k: 1	n:830000
AGT   830000 perm   383 sec   (2168 perm/sec)   p_kst 1.204819e-06   p_cons 9.946084e-01   p_joint 1.686747e-05

Joint ci ratio: 9.799901e-01	ci left: 9.994541e-06	ci right 2.945247e-05	k: 15	n:840000
Cons ci ratio: 3.150106e-04	ci left: 9.944470e-01	ci right 9.947615e-01	k: 835469	n:840000
KS ci ratio: 2.771854e+00	ci left: 3.014025e-08	ci right 6.632891e-06	k: 1	n:840000
AGT   840000 perm   390 sec   (2152 perm/sec)   p_kst 1.190476e-06   p_cons 9.946060e-01   p_joint 1.785714e-05

Joint ci ratio: 9.799902e-01	ci left: 9.876957e-06	ci right 2.910597e-05	k: 15	n:850000
Cons ci ratio: 3.134283e-04	ci left: 9.944383e-01	ci right 9.947512e-01	k: 845407	n:850000
KS ci ratio: 2.771854e+00	ci left: 2.978566e-08	ci right 6.554857e-06	k: 1	n:850000
AGT   850000 perm   398 sec   (2135 perm/sec)   p_kst 1.176471e-06   p_cons 9.945965e-01   p_joint 1.764706e-05

Joint ci ratio: 9.799903e-01	ci left: 9.762109e-06	ci right 2.876753e-05	k: 15	n:860000
Cons ci ratio: 3.118012e-04	ci left: 9.944322e-01	ci right 9.947435e-01	k: 855347	n:860000
KS ci ratio: 2.771854e+00	ci left: 2.943931e-08	ci right 6.478638e-06	k: 1	n:860000
AGT   860000 perm   406 sec   (2118 perm/sec)   p_kst 1.162791e-06   p_cons 9.945895e-01   p_joint 1.744186e-05

Joint ci ratio: 9.799904e-01	ci left: 9.649900e-06	ci right 2.843687e-05	k: 15	n:870000
Cons ci ratio: 3.101988e-04	ci left: 9.944263e-01	ci right 9.947359e-01	k: 865287	n:870000
KS ci ratio: 2.771854e+00	ci left: 2.910093e-08	ci right 6.404171e-06	k: 1	n:870000
AGT   870000 perm   414 sec   (2102 perm/sec)   p_kst 1.149425e-06   p_cons 9.945828e-01   p_joint 1.724138e-05

Joint ci ratio: 9.799905e-01	ci left: 9.540242e-06	ci right 2.811373e-05	k: 15	n:880000
Cons ci ratio: 3.081976e-04	ci left: 9.944355e-01	ci right 9.947431e-01	k: 875240	n:880000
KS ci ratio: 2.771854e+00	ci left: 2.877024e-08	ci right 6.331396e-06	k: 1	n:880000
AGT   880000 perm   422 sec   (2088 perm/sec)   p_kst 1.136364e-06   p_cons 9.945909e-01   p_joint 1.704545e-05

Joint ci ratio: 9.799906e-01	ci left: 9.433048e-06	ci right 2.779785e-05	k: 15	n:890000
Cons ci ratio: 3.063940e-04	ci left: 9.944387e-01	ci right 9.947446e-01	k: 885188	n:890000
KS ci ratio: 2.771854e+00	ci left: 2.844697e-08	ci right 6.260257e-06	k: 1	n:890000
AGT   890000 perm   429 sec   (2073 perm/sec)   p_kst 1.123596e-06   p_cons 9.945933e-01   p_joint 1.685393e-05

Joint ci ratio: 9.799907e-01	ci left: 9.328236e-06	ci right 2.748898e-05	k: 15	n:900000
Cons ci ratio: 3.050934e-04	ci left: 9.944250e-01	ci right 9.947296e-01	k: 895121	n:900000
KS ci ratio: 2.771854e+00	ci left: 2.813090e-08	ci right 6.190699e-06	k: 1	n:900000
AGT   900000 perm   437 sec   (2057 perm/sec)   p_kst 1.111111e-06   p_cons 9.945789e-01   p_joint 1.666667e-05

Joint ci ratio: 9.799908e-01	ci left: 9.225727e-06	ci right 2.718691e-05	k: 15	n:910000
Cons ci ratio: 3.038381e-04	ci left: 9.944105e-01	ci right 9.947138e-01	k: 905053	n:910000
KS ci ratio: 2.771854e+00	ci left: 2.782177e-08	ci right 6.122670e-06	k: 1	n:910000
AGT   910000 perm   446 sec   (2042 perm/sec)   p_kst 1.098901e-06   p_cons 9.945637e-01   p_joint 1.648352e-05

Joint ci ratio: 9.799909e-01	ci left: 9.125448e-06	ci right 2.689140e-05	k: 15	n:920000
Cons ci ratio: 3.023835e-04	ci left: 9.944041e-01	ci right 9.947059e-01	k: 914992	n:920000
KS ci ratio: 2.771854e+00	ci left: 2.751936e-08	ci right 6.056119e-06	k: 1	n:920000
AGT   920000 perm   454 sec   (2028 perm/sec)   p_kst 1.086957e-06   p_cons 9.945565e-01   p_joint 1.630435e-05

Joint ci ratio: 9.799910e-01	ci left: 9.027324e-06	ci right 2.660225e-05	k: 15	n:930000
Cons ci ratio: 3.004114e-04	ci left: 9.944174e-01	ci right 9.947172e-01	k: 924949	n:930000
KS ci ratio: 2.771854e+00	ci left: 2.722345e-08	ci right 5.991000e-06	k: 1	n:930000
AGT   930000 perm   462 sec   (2014 perm/sec)   p_kst 1.075269e-06   p_cons 9.945688e-01   p_joint 1.612903e-05

Joint ci ratio: 9.799911e-01	ci left: 8.931288e-06	ci right 2.631925e-05	k: 15	n:940000
Cons ci ratio: 2.988586e-04	ci left: 9.944164e-01	ci right 9.947146e-01	k: 934893	n:940000
KS ci ratio: 2.771854e+00	ci left: 2.693384e-08	ci right 5.927266e-06	k: 1	n:940000
AGT   940000 perm   470 sec   (1998 perm/sec)   p_kst 1.063830e-06   p_cons 9.945670e-01   p_joint 1.595745e-05

Joint ci ratio: 9.799912e-01	ci left: 8.837275e-06	ci right 2.604220e-05	k: 15	n:950000
Cons ci ratio: 2.973585e-04	ci left: 9.944143e-01	ci right 9.947111e-01	k: 944836	n:950000
KS ci ratio: 2.771854e+00	ci left: 2.665032e-08	ci right 5.864874e-06	k: 1	n:950000
AGT   950000 perm   479 sec   (1984 perm/sec)   p_kst 1.052632e-06   p_cons 9.945642e-01   p_joint 1.578947e-05

Joint ci ratio: 9.799913e-01	ci left: 8.745219e-06	ci right 2.577093e-05	k: 15	n:960000
Cons ci ratio: 2.958806e-04	ci left: 9.944123e-01	ci right 9.947076e-01	k: 954779	n:960000
KS ci ratio: 2.771854e+00	ci left: 2.637272e-08	ci right 5.803781e-06	k: 1	n:960000
AGT   960000 perm   487 sec   (1971 perm/sec)   p_kst 1.041667e-06   p_cons 9.945615e-01   p_joint 1.562500e-05

Joint ci ratio: 9.799914e-01	ci left: 8.655062e-06	ci right 2.550525e-05	k: 15	n:970000
Cons ci ratio: 2.940318e-04	ci left: 9.944250e-01	ci right 9.947184e-01	k: 964736	n:970000
KS ci ratio: 2.771854e+00	ci left: 2.610083e-08	ci right 5.743949e-06	k: 1	n:970000
AGT   970000 perm   495 sec   (1958 perm/sec)   p_kst 1.030928e-06   p_cons 9.945732e-01   p_joint 1.546392e-05

Joint ci ratio: 1.012131e+00	ci left: 7.810154e-06	ci right 2.396889e-05	k: 14	n:980000
Cons ci ratio: 2.926306e-04	ci left: 9.944219e-01	ci right 9.947139e-01	k: 974678	n:980000
KS ci ratio: 2.771854e+00	ci left: 2.583450e-08	ci right 5.685337e-06	k: 1	n:980000
AGT   980000 perm   504 sec   (1945 perm/sec)   p_kst 1.020408e-06   p_cons 9.945694e-01   p_joint 1.428571e-05

Joint ci ratio: 1.012131e+00	ci left: 7.731264e-06	ci right 2.372678e-05	k: 14	n:990000
Cons ci ratio: 2.911131e-04	ci left: 9.944240e-01	ci right 9.947145e-01	k: 984625	n:990000
KS ci ratio: 2.771854e+00	ci left: 2.557354e-08	ci right 5.627910e-06	k: 1	n:990000
AGT   990000 perm   512 sec   (1933 perm/sec)   p_kst 1.010101e-06   p_cons 9.945707e-01   p_joint 1.414141e-05

Joint ci ratio: 1.012132e+00	ci left: 7.653951e-06	ci right 2.348951e-05	k: 14	n:1000000
Cons ci ratio: 2.899406e-04	ci left: 9.944139e-01	ci right 9.947032e-01	k: 994560	n:1000000
KS ci ratio: 2.771854e+00	ci left: 2.531781e-08	ci right 5.571631e-06	k: 1	n:1000000
AGT   1000000 perm   521 sec   (1920 perm/sec)   p_kst 1.000000e-06   p_cons 9.945600e-01   p_joint 1.400000e-05

Joint ci ratio: 1.012132e+00	ci left: 7.578169e-06	ci right 2.325694e-05	k: 14	n:1010000
Cons ci ratio: 2.885173e-04	ci left: 9.944140e-01	ci right 9.947019e-01	k: 1004505	n:1010000
KS ci ratio: 2.771854e+00	ci left: 2.506714e-08	ci right 5.516466e-06	k: 1	n:1010000
AGT   1010000 perm   529 sec   (1908 perm/sec)   p_kst 9.900990e-07   p_cons 9.945594e-01   p_joint 1.386139e-05

Joint ci ratio: 1.012132e+00	ci left: 7.503873e-06	ci right 2.302893e-05	k: 14	n:1020000
Cons ci ratio: 2.871927e-04	ci left: 9.944112e-01	ci right 9.946978e-01	k: 1014447	n:1020000
KS ci ratio: 2.771855e+00	ci left: 2.482138e-08	ci right 5.462383e-06	k: 1	n:1020000
AGT   1020000 perm   539 sec   (1893 perm/sec)   p_kst 9.803922e-07   p_cons 9.945559e-01   p_joint 1.372549e-05

Joint ci ratio: 1.012132e+00	ci left: 7.431020e-06	ci right 2.280535e-05	k: 14	n:1030000
Cons ci ratio: 2.854760e-04	ci left: 9.944241e-01	ci right 9.947090e-01	k: 1024405	n:1030000
KS ci ratio: 2.771855e+00	ci left: 2.458040e-08	ci right 5.409351e-06	k: 1	n:1030000
AGT   1030000 perm   548 sec   (1880 perm/sec)   p_kst 9.708738e-07   p_cons 9.945680e-01   p_joint 1.359223e-05

Joint ci ratio: 1.012132e+00	ci left: 7.359567e-06	ci right 2.258607e-05	k: 14	n:1040000
Cons ci ratio: 2.836618e-04	ci left: 9.944417e-01	ci right 9.947248e-01	k: 1034368	n:1040000
KS ci ratio: 2.771855e+00	ci left: 2.434405e-08	ci right 5.357338e-06	k: 1	n:1040000
AGT   1040000 perm   557 sec   (1868 perm/sec)   p_kst 9.615385e-07   p_cons 9.945846e-01   p_joint 1.346154e-05

Joint ci ratio: 1.012132e+00	ci left: 7.289476e-06	ci right 2.237097e-05	k: 14	n:1050000
Cons ci ratio: 2.822289e-04	ci left: 9.944454e-01	ci right 9.947271e-01	k: 1044317	n:1050000
KS ci ratio: 2.771855e+00	ci left: 2.411220e-08	ci right 5.306315e-06	k: 1	n:1050000
AGT   1050000 perm   566 sec   (1857 perm/sec)   p_kst 9.523810e-07   p_cons 9.945876e-01   p_joint 1.333333e-05

Joint ci ratio: 9.799921e-01	ci left: 7.920197e-06	ci right 2.333972e-05	k: 15	n:1060000
Cons ci ratio: 2.808420e-04	ci left: 9.944481e-01	ci right 9.947284e-01	k: 1054265	n:1060000
KS ci ratio: 2.771855e+00	ci left: 2.388472e-08	ci right 5.256256e-06	k: 1	n:1060000
AGT   1060000 perm   575 sec   (1844 perm/sec)   p_kst 9.433962e-07   p_cons 9.945896e-01   p_joint 1.415094e-05

Joint ci ratio: 9.799922e-01	ci left: 7.846176e-06	ci right 2.312159e-05	k: 15	n:1070000
Cons ci ratio: 2.795723e-04	ci left: 9.944470e-01	ci right 9.947260e-01	k: 1064209	n:1070000
KS ci ratio: 2.771855e+00	ci left: 2.366150e-08	ci right 5.207132e-06	k: 1	n:1070000
AGT   1070000 perm   584 sec   (1832 perm/sec)   p_kst 9.345794e-07   p_cons 9.945879e-01   p_joint 1.401869e-05

Joint ci ratio: 9.799923e-01	ci left: 7.773526e-06	ci right 2.290751e-05	k: 15	n:1080000
Cons ci ratio: 2.781522e-04	ci left: 9.944525e-01	ci right 9.947300e-01	k: 1074160	n:1080000
KS ci ratio: 2.771855e+00	ci left: 2.344241e-08	ci right 5.158918e-06	k: 1	n:1080000
AGT   1080000 perm   593 sec   (1820 perm/sec)   p_kst 9.259259e-07   p_cons 9.945926e-01   p_joint 1.388889e-05

Joint ci ratio: 9.799924e-01	ci left: 7.702209e-06	ci right 2.269735e-05	k: 15	n:1090000
Cons ci ratio: 2.770602e-04	ci left: 9.944458e-01	ci right 9.947222e-01	k: 1084098	n:1090000
KS ci ratio: 2.771855e+00	ci left: 2.322735e-08	ci right 5.111589e-06	k: 1	n:1090000
AGT   1090000 perm   602 sec   (1809 perm/sec)   p_kst 9.174312e-07   p_cons 9.945853e-01   p_joint 1.376147e-05

Joint ci ratio: 9.507319e-01	ci left: 8.314006e-06	ci right 2.362080e-05	k: 16	n:1100000
Cons ci ratio: 2.759339e-04	ci left: 9.944410e-01	ci right 9.947164e-01	k: 1094038	n:1100000
KS ci ratio: 2.771855e+00	ci left: 2.301619e-08	ci right 5.065120e-06	k: 1	n:1100000
AGT   1100000 perm   612 sec   (1797 perm/sec)   p_kst 9.090909e-07   p_cons 9.945800e-01   p_joint 1.454545e-05

Joint ci ratio: 9.507319e-01	ci left: 8.239105e-06	ci right 2.340800e-05	k: 16	n:1110000
Cons ci ratio: 2.747293e-04	ci left: 9.944400e-01	ci right 9.947141e-01	k: 1103982	n:1110000
KS ci ratio: 2.771855e+00	ci left: 2.280884e-08	ci right 5.019488e-06	k: 1	n:1110000
AGT   1110000 perm   622 sec   (1786 perm/sec)   p_kst 9.009009e-07   p_cons 9.945784e-01   p_joint 1.441441e-05

Joint ci ratio: 9.507320e-01	ci left: 8.165541e-06	ci right 2.319900e-05	k: 16	n:1120000
Cons ci ratio: 2.733591e-04	ci left: 9.944463e-01	ci right 9.947190e-01	k: 1113934	n:1120000
KS ci ratio: 2.771855e+00	ci left: 2.260519e-08	ci right 4.974671e-06	k: 1	n:1120000
AGT   1120000 perm   631 sec   (1775 perm/sec)   p_kst 8.928571e-07   p_cons 9.945839e-01   p_joint 1.428571e-05

Joint ci ratio: 9.507321e-01	ci left: 8.093280e-06	ci right 2.299370e-05	k: 16	n:1130000
Cons ci ratio: 2.721207e-04	ci left: 9.944479e-01	ci right 9.947194e-01	k: 1123881	n:1130000
KS ci ratio: 2.771855e+00	ci left: 2.240514e-08	ci right 4.930648e-06	k: 1	n:1130000
AGT   1130000 perm   641 sec   (1763 perm/sec)   p_kst 8.849558e-07   p_cons 9.945850e-01   p_joint 1.415929e-05

Joint ci ratio: 9.507321e-01	ci left: 8.022286e-06	ci right 2.279200e-05	k: 16	n:1140000
Cons ci ratio: 2.707004e-04	ci left: 9.944576e-01	ci right 9.947276e-01	k: 1133837	n:1140000
KS ci ratio: 2.771855e+00	ci left: 2.220860e-08	ci right 4.887397e-06	k: 1	n:1140000
AGT   1140000 perm   650 sec   (1753 perm/sec)   p_kst 8.771930e-07   p_cons 9.945939e-01   p_joint 1.403509e-05

Joint ci ratio: 8.993019e-01	ci left: 9.276496e-06	ci right 2.473707e-05	k: 18	n:1150000
Cons ci ratio: 2.694104e-04	ci left: 9.944626e-01	ci right 9.947314e-01	k: 1143788	n:1150000
KS ci ratio: 2.771855e+00	ci left: 2.201548e-08	ci right 4.844898e-06	k: 1	n:1150000
AGT   1150000 perm   660 sec   (1742 perm/sec)   p_kst 8.695652e-07   p_cons 9.945983e-01   p_joint 1.565217e-05

Joint ci ratio: 8.993019e-01	ci left: 9.196526e-06	ci right 2.452382e-05	k: 18	n:1160000
Cons ci ratio: 2.682460e-04	ci left: 9.944632e-01	ci right 9.947309e-01	k: 1153734	n:1160000
KS ci ratio: 2.771855e+00	ci left: 2.182570e-08	ci right 4.803131e-06	k: 1	n:1160000
AGT   1160000 perm   670 sec   (1732 perm/sec)   p_kst 8.620690e-07   p_cons 9.945983e-01   p_joint 1.551724e-05

Joint ci ratio: 8.765308e-01	ci left: 9.777157e-06	ci right 2.535959e-05	k: 19	n:1170000
Cons ci ratio: 2.673939e-04	ci left: 9.944517e-01	ci right 9.947185e-01	k: 1163666	n:1170000
KS ci ratio: 2.771855e+00	ci left: 2.163915e-08	ci right 4.762079e-06	k: 1	n:1170000
AGT   1170000 perm   680 sec   (1720 perm/sec)   p_kst 8.547009e-07   p_cons 9.945863e-01   p_joint 1.623932e-05

Joint ci ratio: 8.765308e-01	ci left: 9.694299e-06	ci right 2.514468e-05	k: 19	n:1180000
Cons ci ratio: 2.664021e-04	ci left: 9.944464e-01	ci right 9.947122e-01	k: 1173605	n:1180000
KS ci ratio: 2.771855e+00	ci left: 2.145577e-08	ci right 4.721723e-06	k: 1	n:1180000
AGT   1180000 perm   690 sec   (1710 perm/sec)   p_kst 8.474576e-07   p_cons 9.945805e-01   p_joint 1.610169e-05

Joint ci ratio: 8.765309e-01	ci left: 9.612834e-06	ci right 2.493338e-05	k: 19	n:1190000
Cons ci ratio: 2.654209e-04	ci left: 9.944412e-01	ci right 9.947060e-01	k: 1183544	n:1190000
KS ci ratio: 2.771855e+00	ci left: 2.127547e-08	ci right 4.682044e-06	k: 1	n:1190000
AGT   1190000 perm   700 sec   (1699 perm/sec)   p_kst 8.403361e-07   p_cons 9.945748e-01   p_joint 1.596639e-05

Joint ci ratio: 8.765310e-01	ci left: 9.532727e-06	ci right 2.472560e-05	k: 19	n:1200000
Cons ci ratio: 2.642257e-04	ci left: 9.944453e-01	ci right 9.947089e-01	k: 1193494	n:1200000
KS ci ratio: 2.771855e+00	ci left: 2.109817e-08	ci right 4.643027e-06	k: 1	n:1200000
AGT   1200000 perm   711 sec   (1688 perm/sec)   p_kst 8.333333e-07   p_cons 9.945783e-01   p_joint 1.583333e-05

Joint ci ratio: 8.554064e-01	ci left: 1.009633e-05	ci right 2.552747e-05	k: 20	n:1210000
Cons ci ratio: 2.632278e-04	ci left: 9.944419e-01	ci right 9.947045e-01	k: 1203435	n:1210000
KS ci ratio: 2.771855e+00	ci left: 2.092381e-08	ci right 4.604655e-06	k: 1	n:1210000
AGT   1210000 perm   721 sec   (1679 perm/sec)   p_kst 8.264463e-07   p_cons 9.945744e-01   p_joint 1.652893e-05

Joint ci ratio: 8.554064e-01	ci left: 1.001357e-05	ci right 2.531823e-05	k: 20	n:1220000
Cons ci ratio: 2.621216e-04	ci left: 9.944435e-01	ci right 9.947050e-01	k: 1213382	n:1220000
KS ci ratio: 2.771855e+00	ci left: 2.075230e-08	ci right 4.566912e-06	k: 1	n:1220000
AGT   1220000 perm   731 sec   (1668 perm/sec)   p_kst 8.196721e-07   p_cons 9.945754e-01   p_joint 1.639344e-05

Joint ci ratio: 8.554065e-01	ci left: 9.932157e-06	ci right 2.511239e-05	k: 20	n:1230000
Cons ci ratio: 2.608915e-04	ci left: 9.944508e-01	ci right 9.947111e-01	k: 1223336	n:1230000
KS ci ratio: 2.771855e+00	ci left: 2.058358e-08	ci right 4.529783e-06	k: 1	n:1230000
AGT   1230000 perm   742 sec   (1658 perm/sec)   p_kst 8.130081e-07   p_cons 9.945821e-01   p_joint 1.626016e-05

Joint ci ratio: 8.554065e-01	ci left: 9.852059e-06	ci right 2.490987e-05	k: 20	n:1240000
Cons ci ratio: 2.597949e-04	ci left: 9.944531e-01	ci right 9.947123e-01	k: 1233284	n:1240000
KS ci ratio: 2.771855e+00	ci left: 2.041759e-08	ci right 4.493253e-06	k: 1	n:1240000
AGT   1240000 perm   752 sec   (1649 perm/sec)   p_kst 8.064516e-07   p_cons 9.945839e-01   p_joint 1.612903e-05

Joint ci ratio: 8.554066e-01	ci left: 9.773242e-06	ci right 2.471059e-05	k: 20	n:1250000
Cons ci ratio: 2.589232e-04	ci left: 9.944465e-01	ci right 9.947048e-01	k: 1243221	n:1250000
KS ci ratio: 2.771855e+00	ci left: 2.025425e-08	ci right 4.457307e-06	k: 1	n:1250000
AGT   1250000 perm   762 sec   (1640 perm/sec)   p_kst 8.000000e-07   p_cons 9.945768e-01   p_joint 1.600000e-05

Joint ci ratio: 8.554067e-01	ci left: 9.695677e-06	ci right 2.451448e-05	k: 20	n:1260000
Cons ci ratio: 2.579271e-04	ci left: 9.944456e-01	ci right 9.947029e-01	k: 1253165	n:1260000
KS ci ratio: 2.771855e+00	ci left: 2.009350e-08	ci right 4.421931e-06	k: 1	n:1260000
AGT   1260000 perm   773 sec   (1631 perm/sec)   p_kst 7.936508e-07   p_cons 9.945754e-01   p_joint 1.587302e-05

Joint ci ratio: 8.554067e-01	ci left: 9.619332e-06	ci right 2.432145e-05	k: 20	n:1270000
Cons ci ratio: 2.569049e-04	ci left: 9.944463e-01	ci right 9.947026e-01	k: 1263111	n:1270000
KS ci ratio: 2.771855e+00	ci left: 1.993528e-08	ci right 4.387113e-06	k: 1	n:1270000
AGT   1270000 perm   783 sec   (1622 perm/sec)   p_kst 7.874016e-07   p_cons 9.945756e-01   p_joint 1.574803e-05

Joint ci ratio: 8.173688e-01	ci left: 1.077135e-05	ci right 2.602197e-05	k: 22	n:1280000
Cons ci ratio: 2.557465e-04	ci left: 9.944533e-01	ci right 9.947085e-01	k: 1273065	n:1280000
KS ci ratio: 2.771855e+00	ci left: 1.977954e-08	ci right 4.352839e-06	k: 1	n:1280000
AGT   1280000 perm   794 sec   (1613 perm/sec)   p_kst 7.812500e-07   p_cons 9.945820e-01   p_joint 1.718750e-05

Joint ci ratio: 8.001589e-01	ci left: 1.130238e-05	ci right 2.675282e-05	k: 23	n:1290000
Cons ci ratio: 2.547132e-04	ci left: 9.944556e-01	ci right 9.947097e-01	k: 1283013	n:1290000
KS ci ratio: 2.771855e+00	ci left: 1.962621e-08	ci right 4.319096e-06	k: 1	n:1290000
AGT   1290000 perm   804 sec   (1604 perm/sec)   p_kst 7.751938e-07   p_cons 9.945837e-01   p_joint 1.782946e-05

Joint ci ratio: 7.839922e-01	ci left: 1.182869e-05	ci right 2.746918e-05	k: 24	n:1300000
Cons ci ratio: 2.533116e-04	ci left: 9.944741e-01	ci right 9.947268e-01	k: 1292982	n:1300000
KS ci ratio: 2.771855e+00	ci left: 1.947524e-08	ci right 4.285872e-06	k: 1	n:1300000
AGT   1300000 perm   815 sec   (1595 perm/sec)   p_kst 7.692308e-07   p_cons 9.946015e-01   p_joint 1.846154e-05

Joint ci ratio: 7.687673e-01	ci left: 1.235018e-05	ci right 2.817158e-05	k: 25	n:1310000
Cons ci ratio: 2.523789e-04	ci left: 9.944730e-01	ci right 9.947248e-01	k: 1302926	n:1310000
KS ci ratio: 2.771855e+00	ci left: 1.932657e-08	ci right 4.253155e-06	k: 1	n:1310000
AGT   1310000 perm   826 sec   (1586 perm/sec)   p_kst 7.633588e-07   p_cons 9.946000e-01   p_joint 1.908397e-05

Joint ci ratio: 7.687674e-01	ci left: 1.225661e-05	ci right 2.795816e-05	k: 25	n:1320000
Cons ci ratio: 2.514742e-04	ci left: 9.944712e-01	ci right 9.947221e-01	k: 1312869	n:1320000
KS ci ratio: 2.771855e+00	ci left: 1.918016e-08	ci right 4.220935e-06	k: 1	n:1320000
AGT   1320000 perm   837 sec   (1578 perm/sec)   p_kst 7.575758e-07   p_cons 9.945977e-01   p_joint 1.893939e-05

Joint ci ratio: 7.687674e-01	ci left: 1.216446e-05	ci right 2.774794e-05	k: 25	n:1330000
Cons ci ratio: 2.507192e-04	ci left: 9.944633e-01	ci right 9.947134e-01	k: 1322804	n:1330000
KS ci ratio: 2.771855e+00	ci left: 1.903595e-08	ci right 4.189198e-06	k: 1	n:1330000
AGT   1330000 perm   848 sec   (1568 perm/sec)   p_kst 7.518797e-07   p_cons 9.945895e-01   p_joint 1.879699e-05

Joint ci ratio: 7.687675e-01	ci left: 1.207368e-05	ci right 2.754087e-05	k: 25	n:1340000
Cons ci ratio: 2.497453e-04	ci left: 9.944654e-01	ci right 9.947145e-01	k: 1332752	n:1340000
KS ci ratio: 2.771855e+00	ci left: 1.889389e-08	ci right 4.157936e-06	k: 1	n:1340000
AGT   1340000 perm   859 sec   (1560 perm/sec)   p_kst 7.462687e-07   p_cons 9.945910e-01   p_joint 1.865672e-05

Joint ci ratio: 7.687676e-01	ci left: 1.198424e-05	ci right 2.733687e-05	k: 25	n:1350000
Cons ci ratio: 2.489197e-04	ci left: 9.944615e-01	ci right 9.947098e-01	k: 1342692	n:1350000
KS ci ratio: 2.771856e+00	ci left: 1.875393e-08	ci right 4.127136e-06	k: 1	n:1350000
AGT   1350000 perm   870 sec   (1552 perm/sec)   p_kst 7.407407e-07   p_cons 9.945867e-01   p_joint 1.851852e-05

Joint ci ratio: 7.687676e-01	ci left: 1.189612e-05	ci right 2.713586e-05	k: 25	n:1360000
Cons ci ratio: 2.479666e-04	ci left: 9.944635e-01	ci right 9.947109e-01	k: 1352640	n:1360000
KS ci ratio: 2.771856e+00	ci left: 1.861604e-08	ci right 4.096790e-06	k: 1	n:1360000
AGT   1360000 perm   881 sec   (1544 perm/sec)   p_kst 7.352941e-07   p_cons 9.945882e-01   p_joint 1.838235e-05

Joint ci ratio: 7.687677e-01	ci left: 1.180929e-05	ci right 2.693779e-05	k: 25	n:1370000
Cons ci ratio: 2.470077e-04	ci left: 9.944663e-01	ci right 9.947127e-01	k: 1362589	n:1370000
KS ci ratio: 2.771856e+00	ci left: 1.848015e-08	ci right 4.066886e-06	k: 1	n:1370000
AGT   1370000 perm   893 sec   (1534 perm/sec)   p_kst 7.299270e-07   p_cons 9.945905e-01   p_joint 1.824818e-05

Joint ci ratio: 7.543967e-01	ci left: 1.230733e-05	ci right 2.760569e-05	k: 26	n:1380000
Cons ci ratio: 2.463413e-04	ci left: 9.944565e-01	ci right 9.947023e-01	k: 1372521	n:1380000
KS ci ratio: 2.771856e+00	ci left: 1.834624e-08	ci right 4.037416e-06	k: 1	n:1380000
AGT   1380000 perm   904 sec   (1526 perm/sec)   p_kst 7.246377e-07   p_cons 9.945804e-01   p_joint 1.884058e-05

Joint ci ratio: 7.543968e-01	ci left: 1.221879e-05	ci right 2.740709e-05	k: 26	n:1390000
Cons ci ratio: 2.455321e-04	ci left: 9.944535e-01	ci right 9.946984e-01	k: 1382462	n:1390000
KS ci ratio: 2.771856e+00	ci left: 1.821425e-08	ci right 4.008370e-06	k: 1	n:1390000
AGT   1390000 perm   916 sec   (1518 perm/sec)   p_kst 7.194245e-07   p_cons 9.945770e-01   p_joint 1.870504e-05

Joint ci ratio: 7.543968e-01	ci left: 1.213151e-05	ci right 2.721133e-05	k: 26	n:1400000
Cons ci ratio: 2.447632e-04	ci left: 9.944490e-01	ci right 9.946932e-01	k: 1392401	n:1400000
KS ci ratio: 2.771856e+00	ci left: 1.808415e-08	ci right 3.979739e-06	k: 1	n:1400000
AGT   1400000 perm   927 sec   (1510 perm/sec)   p_kst 7.142857e-07   p_cons 9.945721e-01   p_joint 1.857143e-05

Joint ci ratio: 7.543969e-01	ci left: 1.204547e-05	ci right 2.701834e-05	k: 26	n:1410000
Cons ci ratio: 2.438891e-04	ci left: 9.944497e-01	ci right 9.946930e-01	k: 1402347	n:1410000
KS ci ratio: 2.771856e+00	ci left: 1.795589e-08	ci right 3.951514e-06	k: 1	n:1410000
AGT   1410000 perm   939 sec   (1502 perm/sec)   p_kst 7.092199e-07   p_cons 9.945723e-01   p_joint 1.843972e-05

Joint ci ratio: 7.408028e-01	ci left: 1.253044e-05	ci right 2.766438e-05	k: 27	n:1420000
Cons ci ratio: 2.431828e-04	ci left: 9.944432e-01	ci right 9.946858e-01	k: 1412283	n:1420000
KS ci ratio: 2.771856e+00	ci left: 1.782944e-08	ci right 3.923686e-06	k: 1	n:1420000
AGT   1420000 perm   951 sec   (1494 perm/sec)   p_kst 7.042254e-07   p_cons 9.945655e-01   p_joint 1.901408e-05

Joint ci ratio: 7.408029e-01	ci left: 1.244281e-05	ci right 2.747092e-05	k: 27	n:1430000
Cons ci ratio: 2.421530e-04	ci left: 9.944517e-01	ci right 9.946932e-01	k: 1422240	n:1430000
KS ci ratio: 2.771856e+00	ci left: 1.770476e-08	ci right 3.896248e-06	k: 1	n:1430000
AGT   1430000 perm   962 sec   (1486 perm/sec)   p_kst 6.993007e-07   p_cons 9.945734e-01   p_joint 1.888112e-05

Joint ci ratio: 7.279181e-01	ci left: 1.292073e-05	ci right 2.810251e-05	k: 28	n:1440000
Cons ci ratio: 2.413686e-04	ci left: 9.944495e-01	ci right 9.946902e-01	k: 1432182	n:1440000
KS ci ratio: 2.771856e+00	ci left: 1.758181e-08	ci right 3.869191e-06	k: 1	n:1440000
AGT   1440000 perm   974 sec   (1479 perm/sec)   p_kst 6.944444e-07   p_cons 9.945708e-01   p_joint 1.944444e-05

Joint ci ratio: 7.040450e-01	ci left: 1.395927e-05	ci right 2.953564e-05	k: 30	n:1450000
Cons ci ratio: 2.404534e-04	ci left: 9.944536e-01	ci right 9.946934e-01	k: 1442133	n:1450000
KS ci ratio: 2.771856e+00	ci left: 1.746056e-08	ci right 3.842507e-06	k: 1	n:1450000
AGT   1450000 perm   986 sec   (1471 perm/sec)   p_kst 6.896552e-07   p_cons 9.945745e-01   p_joint 2.068966e-05

Joint ci ratio: 7.040451e-01	ci left: 1.386365e-05	ci right 2.933334e-05	k: 30	n:1460000
Cons ci ratio: 2.397766e-04	ci left: 9.944473e-01	ci right 9.946864e-01	k: 1452069	n:1460000
KS ci ratio: 2.771856e+00	ci left: 1.734096e-08	ci right 3.816188e-06	k: 1	n:1460000
AGT   1460000 perm   998 sec   (1463 perm/sec)   p_kst 6.849315e-07   p_cons 9.945678e-01   p_joint 2.054795e-05

Joint ci ratio: 7.040451e-01	ci left: 1.376934e-05	ci right 2.913379e-05	k: 30	n:1470000
Cons ci ratio: 2.389998e-04	ci left: 9.944458e-01	ci right 9.946842e-01	k: 1462012	n:1470000
KS ci ratio: 2.771856e+00	ci left: 1.722300e-08	ci right 3.790228e-06	k: 1	n:1470000
AGT   1470000 perm   1010 sec   (1456 perm/sec)   p_kst 6.802721e-07   p_cons 9.945660e-01   p_joint 2.040816e-05

Joint ci ratio: 7.156833e-01	ci left: 1.312285e-05	ci right 2.814099e-05	k: 29	n:1480000
Cons ci ratio: 2.382007e-04	ci left: 9.944458e-01	ci right 9.946834e-01	k: 1471957	n:1480000
KS ci ratio: 2.771856e+00	ci left: 1.710663e-08	ci right 3.764618e-06	k: 1	n:1480000
AGT   1480000 perm   1022 sec   (1449 perm/sec)   p_kst 6.756757e-07   p_cons 9.945655e-01   p_joint 1.959459e-05

Joint ci ratio: 7.156834e-01	ci left: 1.303477e-05	ci right 2.795212e-05	k: 29	n:1490000
Cons ci ratio: 2.374686e-04	ci left: 9.944430e-01	ci right 9.946799e-01	k: 1481898	n:1490000
KS ci ratio: 2.771856e+00	ci left: 1.699182e-08	ci right 3.739352e-06	k: 1	n:1490000
AGT   1490000 perm   1034 sec   (1442 perm/sec)   p_kst 6.711409e-07   p_cons 9.945624e-01   p_joint 1.946309e-05

Joint ci ratio: 7.156834e-01	ci left: 1.294787e-05	ci right 2.776577e-05	k: 29	n:1500000
Cons ci ratio: 2.366555e-04	ci left: 9.944444e-01	ci right 9.946804e-01	k: 1491845	n:1500000
KS ci ratio: 2.771856e+00	ci left: 1.687854e-08	ci right 3.714423e-06	k: 1	n:1500000
AGT   1500000 perm   1046 sec   (1434 perm/sec)   p_kst 6.666667e-07   p_cons 9.945633e-01   p_joint 1.933333e-05

Joint ci ratio: 7.156835e-01	ci left: 1.286213e-05	ci right 2.758190e-05	k: 29	n:1510000
Cons ci ratio: 2.358507e-04	ci left: 9.944457e-01	ci right 9.946809e-01	k: 1501792	n:1510000
KS ci ratio: 2.771856e+00	ci left: 1.676676e-08	ci right 3.689824e-06	k: 1	n:1510000
AGT   1510000 perm   1058 sec   (1427 perm/sec)   p_kst 6.622517e-07   p_cons 9.945642e-01   p_joint 1.920530e-05

Joint ci ratio: 7.040454e-01	ci left: 1.331640e-05	ci right 2.817545e-05	k: 30	n:1520000
Cons ci ratio: 2.354114e-04	ci left: 9.944304e-01	ci right 9.946651e-01	k: 1511714	n:1520000
KS ci ratio: 2.771856e+00	ci left: 1.665645e-08	ci right 3.665549e-06	k: 1	n:1520000
AGT   1520000 perm   1070 sec   (1420 perm/sec)   p_kst 6.578947e-07   p_cons 9.945487e-01   p_joint 1.973684e-05

Joint ci ratio: 7.040454e-01	ci left: 1.322937e-05	ci right 2.799130e-05	k: 30	n:1530000
Cons ci ratio: 2.346335e-04	ci left: 9.944311e-01	ci right 9.946651e-01	k: 1521660	n:1530000
KS ci ratio: 2.771856e+00	ci left: 1.654759e-08	ci right 3.641592e-06	k: 1	n:1530000
AGT   1530000 perm   1083 sec   (1413 perm/sec)   p_kst 6.535948e-07   p_cons 9.945490e-01   p_joint 1.960784e-05

Joint ci ratio: 7.040455e-01	ci left: 1.314346e-05	ci right 2.780954e-05	k: 30	n:1540000
Cons ci ratio: 2.339053e-04	ci left: 9.944298e-01	ci right 9.946631e-01	k: 1531603	n:1540000
KS ci ratio: 2.771856e+00	ci left: 1.644014e-08	ci right 3.617945e-06	k: 1	n:1540000
AGT   1540000 perm   1095 sec   (1406 perm/sec)   p_kst 6.493506e-07   p_cons 9.945474e-01   p_joint 1.948052e-05

Joint ci ratio: 7.040455e-01	ci left: 1.305867e-05	ci right 2.763012e-05	k: 30	n:1550000
Cons ci ratio: 2.332530e-04	ci left: 9.944253e-01	ci right 9.946580e-01	k: 1541541	n:1550000
KS ci ratio: 2.771856e+00	ci left: 1.633407e-08	ci right 3.594603e-06	k: 1	n:1550000
AGT   1550000 perm   1108 sec   (1399 perm/sec)   p_kst 6.451613e-07   p_cons 9.945426e-01   p_joint 1.935484e-05

Joint ci ratio: 7.040456e-01	ci left: 1.297496e-05	ci right 2.745301e-05	k: 30	n:1560000
Cons ci ratio: 2.324688e-04	ci left: 9.944274e-01	ci right 9.946592e-01	k: 1551489	n:1560000
KS ci ratio: 2.771856e+00	ci left: 1.622936e-08	ci right 3.571561e-06	k: 1	n:1560000
AGT   1560000 perm   1120 sec   (1392 perm/sec)   p_kst 6.410256e-07   p_cons 9.945442e-01   p_joint 1.923077e-05

Joint ci ratio: 7.040456e-01	ci left: 1.289231e-05	ci right 2.727815e-05	k: 30	n:1570000
Cons ci ratio: 2.316652e-04	ci left: 9.944307e-01	ci right 9.946617e-01	k: 1561439	n:1570000
KS ci ratio: 2.771856e+00	ci left: 1.612599e-08	ci right 3.548812e-06	k: 1	n:1570000
AGT   1570000 perm   1134 sec   (1385 perm/sec)   p_kst 6.369427e-07   p_cons 9.945471e-01   p_joint 1.910828e-05

Joint ci ratio: 7.040457e-01	ci left: 1.281072e-05	ci right 2.710550e-05	k: 30	n:1580000
Cons ci ratio: 2.309911e-04	ci left: 9.944282e-01	ci right 9.946586e-01	k: 1571380	n:1580000
KS ci ratio: 2.771856e+00	ci left: 1.602393e-08	ci right 3.526351e-06	k: 1	n:1580000
AGT   1580000 perm   1146 sec   (1378 perm/sec)   p_kst 6.329114e-07   p_cons 9.945443e-01   p_joint 1.898734e-05

Joint ci ratio: 7.040457e-01	ci left: 1.273014e-05	ci right 2.693503e-05	k: 30	n:1590000
Cons ci ratio: 2.303627e-04	ci left: 9.944239e-01	ci right 9.946536e-01	k: 1581318	n:1590000
KS ci ratio: 2.771856e+00	ci left: 1.592315e-08	ci right 3.504173e-06	k: 1	n:1590000
AGT   1590000 perm   1159 sec   (1372 perm/sec)   p_kst 6.289308e-07   p_cons 9.945396e-01   p_joint 1.886792e-05

Joint ci ratio: 7.040457e-01	ci left: 1.265058e-05	ci right 2.676668e-05	k: 30	n:1600000
Cons ci ratio: 2.298582e-04	ci left: 9.944139e-01	ci right 9.946431e-01	k: 1591247	n:1600000
KS ci ratio: 2.771856e+00	ci left: 1.582363e-08	ci right 3.482272e-06	k: 1	n:1600000
AGT   1600000 perm   1172 sec   (1365 perm/sec)   p_kst 6.250000e-07   p_cons 9.945294e-01   p_joint 1.875000e-05

Joint ci ratio: 7.040458e-01	ci left: 1.257201e-05	ci right 2.660043e-05	k: 30	n:1610000
Cons ci ratio: 2.291601e-04	ci left: 9.944134e-01	ci right 9.946419e-01	k: 1601191	n:1610000
KS ci ratio: 2.771856e+00	ci left: 1.572535e-08	ci right 3.460643e-06	k: 1	n:1610000
AGT   1610000 perm   1185 sec   (1359 perm/sec)   p_kst 6.211180e-07   p_cons 9.945286e-01   p_joint 1.863354e-05

Joint ci ratio: 7.040458e-01	ci left: 1.249440e-05	ci right 2.643623e-05	k: 30	n:1620000
Cons ci ratio: 2.283905e-04	ci left: 9.944167e-01	ci right 9.946445e-01	k: 1611141	n:1620000
KS ci ratio: 2.771856e+00	ci left: 1.562828e-08	ci right 3.439281e-06	k: 1	n:1620000
AGT   1620000 perm   1198 sec   (1352 perm/sec)   p_kst 6.172840e-07   p_cons 9.945315e-01   p_joint 1.851852e-05

Joint ci ratio: 6.929576e-01	ci left: 1.292212e-05	ci right 2.699500e-05	k: 31	n:1630000
Cons ci ratio: 2.276800e-04	ci left: 9.944175e-01	ci right 9.946445e-01	k: 1621087	n:1630000
KS ci ratio: 2.771856e+00	ci left: 1.553240e-08	ci right 3.418181e-06	k: 1	n:1630000
AGT   1630000 perm   1211 sec   (1346 perm/sec)   p_kst 6.134969e-07   p_cons 9.945319e-01   p_joint 1.901840e-05

Joint ci ratio: 6.929577e-01	ci left: 1.284333e-05	ci right 2.683040e-05	k: 31	n:1640000
Cons ci ratio: 2.271033e-04	ci left: 9.944121e-01	ci right 9.946386e-01	k: 1631023	n:1640000
KS ci ratio: 2.771856e+00	ci left: 1.543769e-08	ci right 3.397339e-06	k: 1	n:1640000
AGT   1640000 perm   1224 sec   (1340 perm/sec)   p_kst 6.097561e-07   p_cons 9.945262e-01   p_joint 1.890244e-05

Joint ci ratio: 6.929577e-01	ci left: 1.276549e-05	ci right 2.666779e-05	k: 31	n:1650000
Cons ci ratio: 2.265180e-04	ci left: 9.944074e-01	ci right 9.946333e-01	k: 1640960	n:1650000
KS ci ratio: 2.771856e+00	ci left: 1.534413e-08	ci right 3.376749e-06	k: 1	n:1650000
AGT   1650000 perm   1237 sec   (1333 perm/sec)   p_kst 6.060606e-07   p_cons 9.945212e-01   p_joint 1.878788e-05

Joint ci ratio: 6.929578e-01	ci left: 1.268859e-05	ci right 2.650714e-05	k: 31	n:1660000
Cons ci ratio: 2.257374e-04	ci left: 9.944125e-01	ci right 9.946376e-01	k: 1650913	n:1660000
KS ci ratio: 2.771856e+00	ci left: 1.525169e-08	ci right 3.356407e-06	k: 1	n:1660000
AGT   1660000 perm   1251 sec   (1327 perm/sec)   p_kst 6.024096e-07   p_cons 9.945259e-01   p_joint 1.867470e-05

Joint ci ratio: 6.929578e-01	ci left: 1.261261e-05	ci right 2.634842e-05	k: 31	n:1670000
Cons ci ratio: 2.250018e-04	ci left: 9.944157e-01	ci right 9.946401e-01	k: 1660863	n:1670000
KS ci ratio: 2.771856e+00	ci left: 1.516036e-08	ci right 3.336309e-06	k: 1	n:1670000
AGT   1670000 perm   1264 sec   (1321 perm/sec)   p_kst 5.988024e-07   p_cons 9.945287e-01   p_joint 1.856287e-05

Joint ci ratio: 6.929578e-01	ci left: 1.253753e-05	ci right 2.619158e-05	k: 31	n:1680000
Cons ci ratio: 2.242610e-04	ci left: 9.944195e-01	ci right 9.946431e-01	k: 1670814	n:1680000
KS ci ratio: 2.771856e+00	ci left: 1.507012e-08	ci right 3.316450e-06	k: 1	n:1680000
AGT   1680000 perm   1277 sec   (1315 perm/sec)   p_kst 5.952381e-07   p_cons 9.945321e-01   p_joint 1.845238e-05

Joint ci ratio: 7.156842e-01	ci left: 1.149219e-05	ci right 2.464419e-05	k: 29	n:1690000
Cons ci ratio: 2.236855e-04	ci left: 9.944154e-01	ci right 9.946385e-01	k: 1680752	n:1690000
KS ci ratio: 2.771856e+00	ci left: 1.498095e-08	ci right 3.296826e-06	k: 1	n:1690000
AGT   1690000 perm   1291 sec   (1309 perm/sec)   p_kst 5.917160e-07   p_cons 9.945278e-01   p_joint 1.715976e-05

Joint ci ratio: 7.156843e-01	ci left: 1.142459e-05	ci right 2.449922e-05	k: 29	n:1700000
Cons ci ratio: 2.230781e-04	ci left: 9.944132e-01	ci right 9.946357e-01	k: 1690693	n:1700000
KS ci ratio: 2.771856e+00	ci left: 1.489283e-08	ci right 3.277433e-06	k: 1	n:1700000
AGT   1700000 perm   1304 sec   (1303 perm/sec)   p_kst 5.882353e-07   p_cons 9.945253e-01   p_joint 1.705882e-05

Joint ci ratio: 7.156843e-01	ci left: 1.135778e-05	ci right 2.435596e-05	k: 29	n:1710000
Cons ci ratio: 2.225114e-04	ci left: 9.944093e-01	ci right 9.946311e-01	k: 1700631	n:1710000
KS ci ratio: 2.771856e+00	ci left: 1.480574e-08	ci right 3.258267e-06	k: 1	n:1710000
AGT   1710000 perm   1318 sec   (1297 perm/sec)   p_kst 5.847953e-07   p_cons 9.945211e-01   p_joint 1.695906e-05

Joint ci ratio: 7.156844e-01	ci left: 1.129175e-05	ci right 2.421435e-05	k: 29	n:1720000
Cons ci ratio: 2.220553e-04	ci left: 9.944001e-01	ci right 9.946215e-01	k: 1710560	n:1720000
KS ci ratio: 2.771856e+00	ci left: 1.471966e-08	ci right 3.239323e-06	k: 1	n:1720000
AGT   1720000 perm   1332 sec   (1291 perm/sec)   p_kst 5.813953e-07   p_cons 9.945116e-01   p_joint 1.686047e-05

Joint ci ratio: 7.156844e-01	ci left: 1.122648e-05	ci right 2.407438e-05	k: 29	n:1730000
Cons ci ratio: 2.215897e-04	ci left: 9.943916e-01	ci right 9.946125e-01	k: 1720490	n:1730000
KS ci ratio: 2.771856e+00	ci left: 1.463457e-08	ci right 3.220599e-06	k: 1	n:1730000
AGT   1730000 perm   1346 sec   (1285 perm/sec)   p_kst 5.780347e-07   p_cons 9.945029e-01   p_joint 1.676301e-05

Joint ci ratio: 7.156844e-01	ci left: 1.116196e-05	ci right 2.393603e-05	k: 29	n:1740000
Cons ci ratio: 2.209291e-04	ci left: 9.943931e-01	ci right 9.946133e-01	k: 1730437	n:1740000
KS ci ratio: 2.771856e+00	ci left: 1.455046e-08	ci right 3.202090e-06	k: 1	n:1740000
AGT   1740000 perm   1360 sec   (1279 perm/sec)   p_kst 5.747126e-07   p_cons 9.945040e-01   p_joint 1.666667e-05

Joint ci ratio: 7.156845e-01	ci left: 1.109817e-05	ci right 2.379925e-05	k: 29	n:1750000
Cons ci ratio: 2.200784e-04	ci left: 9.944043e-01	ci right 9.946238e-01	k: 1740401	n:1750000
KS ci ratio: 2.771856e+00	ci left: 1.446732e-08	ci right 3.183792e-06	k: 1	n:1750000
AGT   1750000 perm   1374 sec   (1273 perm/sec)   p_kst 5.714286e-07   p_cons 9.945149e-01   p_joint 1.657143e-05

Joint ci ratio: 7.156845e-01	ci left: 1.103512e-05	ci right 2.366403e-05	k: 29	n:1760000
Cons ci ratio: 2.194425e-04	ci left: 9.944051e-01	ci right 9.946239e-01	k: 1750347	n:1760000
KS ci ratio: 2.771856e+00	ci left: 1.438512e-08	ci right 3.165702e-06	k: 1	n:1760000
AGT   1760000 perm   1388 sec   (1268 perm/sec)   p_kst 5.681818e-07   p_cons 9.945153e-01   p_joint 1.647727e-05

Joint ci ratio: 7.156845e-01	ci left: 1.097277e-05	ci right 2.353033e-05	k: 29	n:1770000
Cons ci ratio: 2.188461e-04	ci left: 9.944042e-01	ci right 9.946224e-01	k: 1760290	n:1770000
KS ci ratio: 2.771856e+00	ci left: 1.430385e-08	ci right 3.147817e-06	k: 1	n:1770000
AGT   1770000 perm   1402 sec   (1262 perm/sec)   p_kst 5.649718e-07   p_cons 9.945141e-01   p_joint 1.638418e-05

Joint ci ratio: 7.156846e-01	ci left: 1.091112e-05	ci right 2.339814e-05	k: 29	n:1780000
Cons ci ratio: 2.182096e-04	ci left: 9.944056e-01	ci right 9.946231e-01	k: 1770237	n:1780000
KS ci ratio: 2.771856e+00	ci left: 1.422349e-08	ci right 3.130133e-06	k: 1	n:1780000
AGT   1780000 perm   1416 sec   (1257 perm/sec)   p_kst 5.617978e-07   p_cons 9.945152e-01   p_joint 1.629213e-05

Joint ci ratio: 7.156846e-01	ci left: 1.085017e-05	ci right 2.326742e-05	k: 29	n:1790000
Cons ci ratio: 2.174225e-04	ci left: 9.944148e-01	ci right 9.946316e-01	k: 1780198	n:1790000
KS ci ratio: 2.771856e+00	ci left: 1.414403e-08	ci right 3.112646e-06	k: 1	n:1790000
AGT   1790000 perm   1431 sec   (1251 perm/sec)   p_kst 5.586592e-07   p_cons 9.945240e-01   p_joint 1.620112e-05

Joint ci ratio: 7.156846e-01	ci left: 1.078989e-05	ci right 2.313816e-05	k: 29	n:1800000
Cons ci ratio: 2.168645e-04	ci left: 9.944128e-01	ci right 9.946290e-01	k: 1790139	n:1800000
KS ci ratio: 2.771856e+00	ci left: 1.406545e-08	ci right 3.095354e-06	k: 1	n:1800000
AGT   1800000 perm   1445 sec   (1246 perm/sec)   p_kst 5.555556e-07   p_cons 9.945217e-01   p_joint 1.611111e-05

Joint ci ratio: 7.040466e-01	ci left: 1.118283e-05	ci right 2.366117e-05	k: 30	n:1810000
Cons ci ratio: 2.163546e-04	ci left: 9.944085e-01	ci right 9.946242e-01	k: 1800076	n:1810000
KS ci ratio: 2.771856e+00	ci left: 1.398774e-08	ci right 3.078252e-06	k: 1	n:1810000
AGT   1810000 perm   1460 sec   (1240 perm/sec)   p_kst 5.524862e-07   p_cons 9.945171e-01   p_joint 1.657459e-05

Joint ci ratio: 7.040466e-01	ci left: 1.112139e-05	ci right 2.353116e-05	k: 30	n:1820000
Cons ci ratio: 2.157069e-04	ci left: 9.944115e-01	ci right 9.946265e-01	k: 1810026	n:1820000
KS ci ratio: 2.771856e+00	ci left: 1.391088e-08	ci right 3.061339e-06	k: 1	n:1820000
AGT   1820000 perm   1474 sec   (1235 perm/sec)   p_kst 5.494505e-07   p_cons 9.945198e-01   p_joint 1.648352e-05

Joint ci ratio: 7.040466e-01	ci left: 1.106061e-05	ci right 2.340258e-05	k: 30	n:1830000
Cons ci ratio: 2.149893e-04	ci left: 9.944183e-01	ci right 9.946326e-01	k: 1819983	n:1830000
KS ci ratio: 2.771856e+00	ci left: 1.383487e-08	ci right 3.044610e-06	k: 1	n:1830000
AGT   1830000 perm   1489 sec   (1229 perm/sec)   p_kst 5.464481e-07   p_cons 9.945262e-01   p_joint 1.639344e-05

Joint ci ratio: 7.040467e-01	ci left: 1.100050e-05	ci right 2.327539e-05	k: 30	n:1840000
Cons ci ratio: 2.144820e-04	ci left: 9.944146e-01	ci right 9.946284e-01	k: 1829921	n:1840000
KS ci ratio: 2.771856e+00	ci left: 1.375968e-08	ci right 3.028063e-06	k: 1	n:1840000
AGT   1840000 perm   1503 sec   (1224 perm/sec)   p_kst 5.434783e-07   p_cons 9.945223e-01   p_joint 1.630435e-05

Joint ci ratio: 7.040467e-01	ci left: 1.094104e-05	ci right 2.314958e-05	k: 30	n:1850000
Cons ci ratio: 2.138932e-04	ci left: 9.944153e-01	ci right 9.946286e-01	k: 1839867	n:1850000
KS ci ratio: 2.771856e+00	ci left: 1.368530e-08	ci right 3.011695e-06	k: 1	n:1850000
AGT   1850000 perm   1518 sec   (1219 perm/sec)   p_kst 5.405405e-07   p_cons 9.945227e-01   p_joint 1.621622e-05

Joint ci ratio: 7.040467e-01	ci left: 1.088222e-05	ci right 2.302512e-05	k: 30	n:1860000
Cons ci ratio: 2.133408e-04	ci left: 9.944144e-01	ci right 9.946271e-01	k: 1849810	n:1860000
KS ci ratio: 2.771856e+00	ci left: 1.361172e-08	ci right 2.995504e-06	k: 1	n:1860000
AGT   1860000 perm   1533 sec   (1214 perm/sec)   p_kst 5.376344e-07   p_cons 9.945215e-01   p_joint 1.612903e-05

Joint ci ratio: 6.929585e-01	ci left: 1.126366e-05	ci right 2.353041e-05	k: 31	n:1870000
Cons ci ratio: 2.128553e-04	ci left: 9.944102e-01	ci right 9.946225e-01	k: 1859747	n:1870000
KS ci ratio: 2.771856e+00	ci left: 1.353893e-08	ci right 2.979485e-06	k: 1	n:1870000
AGT   1870000 perm   1548 sec   (1208 perm/sec)   p_kst 5.347594e-07   p_cons 9.945171e-01   p_joint 1.657754e-05

Joint ci ratio: 6.929586e-01	ci left: 1.120375e-05	ci right 2.340525e-05	k: 31	n:1880000
Cons ci ratio: 2.123833e-04	ci left: 9.944056e-01	ci right 9.946173e-01	k: 1869683	n:1880000
KS ci ratio: 2.771856e+00	ci left: 1.346692e-08	ci right 2.963636e-06	k: 1	n:1880000
AGT   1880000 perm   1562 sec   (1203 perm/sec)   p_kst 5.319149e-07   p_cons 9.945122e-01   p_joint 1.648936e-05

Joint ci ratio: 6.929586e-01	ci left: 1.114447e-05	ci right 2.328141e-05	k: 31	n:1890000
Cons ci ratio: 2.118835e-04	ci left: 9.944026e-01	ci right 9.946139e-01	k: 1879622	n:1890000
KS ci ratio: 2.771856e+00	ci left: 1.339567e-08	ci right 2.947956e-06	k: 1	n:1890000
AGT   1890000 perm   1578 sec   (1198 perm/sec)   p_kst 5.291005e-07   p_cons 9.945090e-01   p_joint 1.640212e-05

Joint ci ratio: 6.929586e-01	ci left: 1.108581e-05	ci right 2.315888e-05	k: 31	n:1900000
Cons ci ratio: 2.112038e-04	ci left: 9.944092e-01	ci right 9.946198e-01	k: 1889579	n:1900000
KS ci ratio: 2.771856e+00	ci left: 1.332516e-08	ci right 2.932440e-06	k: 1	n:1900000
AGT   1900000 perm   1593 sec   (1193 perm/sec)   p_kst 5.263158e-07   p_cons 9.945153e-01   p_joint 1.631579e-05

Joint ci ratio: 6.929587e-01	ci left: 1.102777e-05	ci right 2.303763e-05	k: 31	n:1910000
Cons ci ratio: 2.106618e-04	ci left: 9.944089e-01	ci right 9.946189e-01	k: 1899523	n:1910000
KS ci ratio: 2.771856e+00	ci left: 1.325540e-08	ci right 2.917087e-06	k: 1	n:1910000
AGT   1910000 perm   1608 sec   (1188 perm/sec)   p_kst 5.235602e-07   p_cons 9.945147e-01   p_joint 1.623037e-05

Joint ci ratio: 6.929587e-01	ci left: 1.097034e-05	ci right 2.291764e-05	k: 31	n:1920000
Cons ci ratio: 2.099233e-04	ci left: 9.944191e-01	ci right 9.946284e-01	k: 1909487	n:1920000
KS ci ratio: 2.771856e+00	ci left: 1.318636e-08	ci right 2.901894e-06	k: 1	n:1920000
AGT   1920000 perm   1623 sec   (1183 perm/sec)   p_kst 5.208333e-07   p_cons 9.945245e-01   p_joint 1.614583e-05

Joint ci ratio: 6.929587e-01	ci left: 1.091349e-05	ci right 2.279890e-05	k: 31	n:1930000
Cons ci ratio: 2.094011e-04	ci left: 9.944182e-01	ci right 9.946270e-01	k: 1919430	n:1930000
KS ci ratio: 2.771856e+00	ci left: 1.311804e-08	ci right 2.886858e-06	k: 1	n:1930000
AGT   1930000 perm   1639 sec   (1178 perm/sec)   p_kst 5.181347e-07   p_cons 9.945233e-01   p_joint 1.606218e-05

Joint ci ratio: 6.929588e-01	ci left: 1.085724e-05	ci right 2.268138e-05	k: 31	n:1940000
Cons ci ratio: 2.087838e-04	ci left: 9.944225e-01	ci right 9.946307e-01	k: 1929383	n:1940000
KS ci ratio: 2.771856e+00	ci left: 1.305042e-08	ci right 2.871978e-06	k: 1	n:1940000
AGT   1940000 perm   1654 sec   (1173 perm/sec)   p_kst 5.154639e-07   p_cons 9.945273e-01   p_joint 1.597938e-05

Joint ci ratio: 6.929588e-01	ci left: 1.080156e-05	ci right 2.256507e-05	k: 31	n:1950000
Cons ci ratio: 2.083289e-04	ci left: 9.944185e-01	ci right 9.946262e-01	k: 1939320	n:1950000
KS ci ratio: 2.771856e+00	ci left: 1.298349e-08	ci right 2.857250e-06	k: 1	n:1950000
AGT   1950000 perm   1670 sec   (1168 perm/sec)   p_kst 5.128205e-07   p_cons 9.945231e-01   p_joint 1.589744e-05

Joint ci ratio: 6.929588e-01	ci left: 1.074645e-05	ci right 2.244994e-05	k: 31	n:1960000
Cons ci ratio: 2.078379e-04	ci left: 9.944166e-01	ci right 9.946238e-01	k: 1949261	n:1960000
KS ci ratio: 2.771856e+00	ci left: 1.291725e-08	ci right 2.842672e-06	k: 1	n:1960000
AGT   1960000 perm   1685 sec   (1163 perm/sec)   p_kst 5.102041e-07   p_cons 9.945209e-01   p_joint 1.581633e-05

Joint ci ratio: 6.823785e-01	ci left: 1.111067e-05	ci right 2.293112e-05	k: 32	n:1970000
Cons ci ratio: 2.072827e-04	ci left: 9.944183e-01	ci right 9.946249e-01	k: 1959209	n:1970000
KS ci ratio: 2.771856e+00	ci left: 1.285168e-08	ci right 2.828242e-06	k: 1	n:1970000
AGT   1970000 perm   1701 sec   (1158 perm/sec)   p_kst 5.076142e-07   p_cons 9.945223e-01   p_joint 1.624365e-05

Joint ci ratio: 6.823786e-01	ci left: 1.105456e-05	ci right 2.281530e-05	k: 32	n:1980000
Cons ci ratio: 2.066744e-04	ci left: 9.944230e-01	ci right 9.946291e-01	k: 1969163	n:1980000
KS ci ratio: 2.771856e+00	ci left: 1.278677e-08	ci right 2.813958e-06	k: 1	n:1980000
AGT   1980000 perm   1717 sec   (1153 perm/sec)   p_kst 5.050505e-07   p_cons 9.945268e-01   p_joint 1.616162e-05

Joint ci ratio: 6.823786e-01	ci left: 1.099901e-05	ci right 2.270065e-05	k: 32	n:1990000
Cons ci ratio: 2.061665e-04	ci left: 9.944226e-01	ci right 9.946282e-01	k: 1979107	n:1990000
KS ci ratio: 2.771856e+00	ci left: 1.272252e-08	ci right 2.799818e-06	k: 1	n:1990000
AGT   1990000 perm   1733 sec   (1149 perm/sec)   p_kst 5.025126e-07   p_cons 9.945261e-01   p_joint 1.608040e-05

Joint ci ratio: 6.823786e-01	ci left: 1.094401e-05	ci right 2.258715e-05	k: 32	n:2000000
Cons ci ratio: 2.055490e-04	ci left: 9.944283e-01	ci right 9.946332e-01	k: 1989063	n:2000000
KS ci ratio: 2.771857e+00	ci left: 1.265890e-08	ci right 2.785819e-06	k: 1	n:2000000
AGT   2000000 perm   1749 sec   (1144 perm/sec)   p_kst 5.000000e-07   p_cons 9.945315e-01   p_joint 1.600000e-05

Joint ci ratio: 6.823786e-01	ci left: 1.088957e-05	ci right 2.247478e-05	k: 32	n:2010000
Cons ci ratio: 2.051431e-04	ci left: 9.944229e-01	ci right 9.946274e-01	k: 1998997	n:2010000
KS ci ratio: 2.771857e+00	ci left: 1.259592e-08	ci right 2.771959e-06	k: 1	n:2010000
AGT   2010000 perm   1765 sec   (1139 perm/sec)   p_kst 4.975124e-07   p_cons 9.945259e-01   p_joint 1.592040e-05

Joint ci ratio: 8.554095e-01	ci left: 6.047792e-06	ci right 1.529123e-05	k: 20	n:2020000
Cons ci ratio: 2.045533e-04	ci left: 9.944275e-01	ci right 9.946314e-01	k: 2008951	n:2020000
KS ci ratio: 2.771857e+00	ci left: 1.253357e-08	ci right 2.758236e-06	k: 1	n:2020000
AGT   2020000 perm   1780 sec   (1135 perm/sec)   p_kst 4.950495e-07   p_cons 9.945302e-01   p_joint 9.900990e-06

Joint ci ratio: 8.554095e-01	ci left: 6.018000e-06	ci right 1.521591e-05	k: 20	n:2030000
Cons ci ratio: 2.040516e-04	ci left: 9.944276e-01	ci right 9.946311e-01	k: 2018896	n:2030000
KS ci ratio: 2.771857e+00	ci left: 1.247183e-08	ci right 2.744649e-06	k: 1	n:2030000
AGT   2030000 perm   1796 sec   (1131 perm/sec)   p_kst 4.926108e-07   p_cons 9.945300e-01   p_joint 9.852217e-06

Joint ci ratio: 8.554095e-01	ci left: 5.988500e-06	ci right 1.514132e-05	k: 20	n:2040000
Cons ci ratio: 2.035535e-04	ci left: 9.944277e-01	ci right 9.946307e-01	k: 2028841	n:2040000
KS ci ratio: 2.771857e+00	ci left: 1.241069e-08	ci right 2.731195e-06	k: 1	n:2040000
AGT   2040000 perm   1811 sec   (1126 perm/sec)   p_kst 4.901961e-07   p_cons 9.945299e-01   p_joint 9.803922e-06

Joint ci ratio: 8.554095e-01	ci left: 5.959288e-06	ci right 1.506746e-05	k: 20	n:2050000
Cons ci ratio: 2.030773e-04	ci left: 9.944269e-01	ci right 9.946293e-01	k: 2038784	n:2050000
KS ci ratio: 2.771857e+00	ci left: 1.235015e-08	ci right 2.717872e-06	k: 1	n:2050000
AGT   2050000 perm   1828 sec   (1122 perm/sec)   p_kst 4.878049e-07   p_cons 9.945288e-01   p_joint 9.756098e-06

Joint ci ratio: 8.554096e-01	ci left: 5.930359e-06	ci right 1.499432e-05	k: 20	n:2060000
Cons ci ratio: 2.026858e-04	ci left: 9.944216e-01	ci right 9.946236e-01	k: 2048718	n:2060000
KS ci ratio: 2.771857e+00	ci left: 1.229020e-08	ci right 2.704678e-06	k: 1	n:2060000
AGT   2060000 perm   1843 sec   (1117 perm/sec)   p_kst 4.854369e-07   p_cons 9.945233e-01   p_joint 9.708738e-06

Joint ci ratio: 8.554096e-01	ci left: 5.901710e-06	ci right 1.492188e-05	k: 20	n:2070000
Cons ci ratio: 2.022514e-04	ci left: 9.944188e-01	ci right 9.946204e-01	k: 2058657	n:2070000
KS ci ratio: 2.771857e+00	ci left: 1.223083e-08	ci right 2.691612e-06	k: 1	n:2070000
AGT   2070000 perm   1859 sec   (1113 perm/sec)   p_kst 4.830918e-07   p_cons 9.945203e-01   p_joint 9.661836e-06

Joint ci ratio: 8.554096e-01	ci left: 5.873336e-06	ci right 1.485014e-05	k: 20	n:2080000
Cons ci ratio: 2.016418e-04	ci left: 9.944257e-01	ci right 9.946267e-01	k: 2068616	n:2080000
KS ci ratio: 2.771857e+00	ci left: 1.217202e-08	ci right 2.678672e-06	k: 1	n:2080000
AGT   2080000 perm   1875 sec   (1109 perm/sec)   p_kst 4.807692e-07   p_cons 9.945269e-01   p_joint 9.615385e-06

Joint ci ratio: 8.554096e-01	ci left: 5.845234e-06	ci right 1.477909e-05	k: 20	n:2090000
Cons ci ratio: 2.013291e-04	ci left: 9.944167e-01	ci right 9.946174e-01	k: 2078542	n:2090000
KS ci ratio: 2.771857e+00	ci left: 1.211378e-08	ci right 2.665855e-06	k: 1	n:2090000
AGT   2090000 perm   1892 sec   (1105 perm/sec)   p_kst 4.784689e-07   p_cons 9.945177e-01   p_joint 9.569378e-06

Joint ci ratio: 8.554096e-01	ci left: 5.817400e-06	ci right 1.470871e-05	k: 20	n:2100000
Cons ci ratio: 2.008331e-04	ci left: 9.944178e-01	ci right 9.946180e-01	k: 2088489	n:2100000
KS ci ratio: 2.771857e+00	ci left: 1.205610e-08	ci right 2.653161e-06	k: 1	n:2100000
AGT   2100000 perm   1909 sec   (1100 perm/sec)   p_kst 4.761905e-07   p_cons 9.945186e-01   p_joint 9.523810e-06

Joint ci ratio: 8.765343e-01	ci left: 5.421450e-06	ci right 1.406198e-05	k: 19	n:2110000
Cons ci ratio: 2.002624e-04	ci left: 9.944232e-01	ci right 9.946228e-01	k: 2098445	n:2110000
KS ci ratio: 2.771857e+00	ci left: 1.199896e-08	ci right 2.640586e-06	k: 1	n:2110000
AGT   2110000 perm   1925 sec   (1096 perm/sec)   p_kst 4.739336e-07   p_cons 9.945237e-01   p_joint 9.004739e-06

Joint ci ratio: 8.765343e-01	ci left: 5.395877e-06	ci right 1.399565e-05	k: 19	n:2120000
Cons ci ratio: 1.998521e-04	ci left: 9.944200e-01	ci right 9.946192e-01	k: 2108383	n:2120000
KS ci ratio: 2.771857e+00	ci left: 1.194236e-08	ci right 2.628131e-06	k: 1	n:2120000
AGT   2120000 perm   1942 sec   (1091 perm/sec)   p_kst 4.716981e-07   p_cons 9.945203e-01   p_joint 8.962264e-06

Joint ci ratio: 8.554097e-01	ci left: 5.735464e-06	ci right 1.450155e-05	k: 20	n:2130000
Cons ci ratio: 1.993068e-04	ci left: 9.944244e-01	ci right 9.946231e-01	k: 2118337	n:2130000
KS ci ratio: 2.771857e+00	ci left: 1.188629e-08	ci right 2.615792e-06	k: 1	n:2130000
AGT   2130000 perm   1959 sec   (1087 perm/sec)   p_kst 4.694836e-07   p_cons 9.945244e-01   p_joint 9.389671e-06

Joint ci ratio: 8.554097e-01	ci left: 5.708663e-06	ci right 1.443378e-05	k: 20	n:2140000
Cons ci ratio: 1.988682e-04	ci left: 9.944231e-01	ci right 9.946213e-01	k: 2128279	n:2140000
KS ci ratio: 2.771857e+00	ci left: 1.183075e-08	ci right 2.603569e-06	k: 1	n:2140000
AGT   2140000 perm   1976 sec   (1083 perm/sec)   p_kst 4.672897e-07   p_cons 9.945229e-01   p_joint 9.345794e-06

Joint ci ratio: 8.554098e-01	ci left: 5.682111e-06	ci right 1.436665e-05	k: 20	n:2150000
Cons ci ratio: 1.984240e-04	ci left: 9.944223e-01	ci right 9.946201e-01	k: 2138222	n:2150000
KS ci ratio: 2.771857e+00	ci left: 1.177572e-08	ci right 2.591459e-06	k: 1	n:2150000
AGT   2150000 perm   1993 sec   (1079 perm/sec)   p_kst 4.651163e-07   p_cons 9.945219e-01   p_joint 9.302326e-06

Joint ci ratio: 8.554098e-01	ci left: 5.655805e-06	ci right 1.430014e-05	k: 20	n:2160000
Cons ci ratio: 1.979996e-04	ci left: 9.944206e-01	ci right 9.946179e-01	k: 2148163	n:2160000
KS ci ratio: 2.771857e+00	ci left: 1.172121e-08	ci right 2.579462e-06	k: 1	n:2160000
AGT   2160000 perm   2010 sec   (1075 perm/sec)   p_kst 4.629630e-07   p_cons 9.945199e-01   p_joint 9.259259e-06

Joint ci ratio: 8.554098e-01	ci left: 5.629741e-06	ci right 1.423424e-05	k: 20	n:2170000
Cons ci ratio: 1.975946e-04	ci left: 9.944179e-01	ci right 9.946149e-01	k: 2158102	n:2170000
KS ci ratio: 2.771857e+00	ci left: 1.166719e-08	ci right 2.567575e-06	k: 1	n:2170000
AGT   2170000 perm   2027 sec   (1071 perm/sec)   p_kst 4.608295e-07   p_cons 9.945171e-01   p_joint 9.216590e-06

Joint ci ratio: 8.554098e-01	ci left: 5.603917e-06	ci right 1.416895e-05	k: 20	n:2180000
Cons ci ratio: 1.970925e-04	ci left: 9.944208e-01	ci right 9.946173e-01	k: 2168053	n:2180000
KS ci ratio: 2.771857e+00	ci left: 1.161367e-08	ci right 2.555797e-06	k: 1	n:2180000
AGT   2180000 perm   2044 sec   (1067 perm/sec)   p_kst 4.587156e-07   p_cons 9.945197e-01   p_joint 9.174312e-06

Joint ci ratio: 8.554098e-01	ci left: 5.578328e-06	ci right 1.410425e-05	k: 20	n:2190000
Cons ci ratio: 1.967012e-04	ci left: 9.944177e-01	ci right 9.946138e-01	k: 2177991	n:2190000
KS ci ratio: 2.771857e+00	ci left: 1.156064e-08	ci right 2.544127e-06	k: 1	n:2190000
AGT   2190000 perm   2061 sec   (1063 perm/sec)   p_kst 4.566210e-07   p_cons 9.945164e-01   p_joint 9.132420e-06

Joint ci ratio: 8.554099e-01	ci left: 5.552972e-06	ci right 1.404014e-05	k: 20	n:2200000
Cons ci ratio: 1.963040e-04	ci left: 9.944151e-01	ci right 9.946108e-01	k: 2187930	n:2200000
KS ci ratio: 2.771857e+00	ci left: 1.150809e-08	ci right 2.532563e-06	k: 1	n:2200000
AGT   2200000 perm   2078 sec   (1059 perm/sec)   p_kst 4.545455e-07   p_cons 9.945136e-01   p_joint 9.090909e-06

Joint ci ratio: 8.554099e-01	ci left: 5.527845e-06	ci right 1.397661e-05	k: 20	n:2210000
Cons ci ratio: 1.958848e-04	ci left: 9.944139e-01	ci right 9.946092e-01	k: 2197872	n:2210000
KS ci ratio: 2.771857e+00	ci left: 1.145602e-08	ci right 2.521103e-06	k: 1	n:2210000
AGT   2210000 perm   2096 sec   (1054 perm/sec)   p_kst 4.524887e-07   p_cons 9.945122e-01   p_joint 9.049774e-06

Joint ci ratio: 8.554099e-01	ci left: 5.502945e-06	ci right 1.391365e-05	k: 20	n:2220000
Cons ci ratio: 1.953715e-04	ci left: 9.944182e-01	ci right 9.946129e-01	k: 2207826	n:2220000
KS ci ratio: 2.771857e+00	ci left: 1.140442e-08	ci right 2.509747e-06	k: 1	n:2220000
AGT   2220000 perm   2114 sec   (1050 perm/sec)   p_kst 4.504505e-07   p_cons 9.945162e-01   p_joint 9.009009e-06

Joint ci ratio: 8.554099e-01	ci left: 5.478268e-06	ci right 1.385126e-05	k: 20	n:2230000
Cons ci ratio: 1.948781e-04	ci left: 9.944215e-01	ci right 9.946158e-01	k: 2217778	n:2230000
KS ci ratio: 2.771857e+00	ci left: 1.135328e-08	ci right 2.498492e-06	k: 1	n:2230000
AGT   2230000 perm   2131 sec   (1046 perm/sec)   p_kst 4.484305e-07   p_cons 9.945193e-01   p_joint 8.968610e-06

Joint ci ratio: 8.554099e-01	ci left: 5.453812e-06	ci right 1.378942e-05	k: 20	n:2240000
Cons ci ratio: 1.944840e-04	ci left: 9.944194e-01	ci right 9.946133e-01	k: 2227718	n:2240000
KS ci ratio: 2.771857e+00	ci left: 1.130259e-08	ci right 2.487338e-06	k: 1	n:2240000
AGT   2240000 perm   2149 sec   (1042 perm/sec)   p_kst 4.464286e-07   p_cons 9.945170e-01   p_joint 8.928571e-06

Joint ci ratio: 8.554099e-01	ci left: 5.429572e-06	ci right 1.372813e-05	k: 20	n:2250000
Cons ci ratio: 1.941079e-04	ci left: 9.944164e-01	ci right 9.946099e-01	k: 2237656	n:2250000
KS ci ratio: 2.771857e+00	ci left: 1.125236e-08	ci right 2.476283e-06	k: 1	n:2250000
AGT   2250000 perm   2167 sec   (1038 perm/sec)   p_kst 4.444444e-07   p_cons 9.945138e-01   p_joint 8.888889e-06

Joint ci ratio: 8.554100e-01	ci left: 5.405548e-06	ci right 1.366739e-05	k: 20	n:2260000
Cons ci ratio: 1.937105e-04	ci left: 9.944148e-01	ci right 9.946079e-01	k: 2247597	n:2260000
KS ci ratio: 2.771857e+00	ci left: 1.120257e-08	ci right 2.465326e-06	k: 1	n:2260000
AGT   2260000 perm   2184 sec   (1035 perm/sec)   p_kst 4.424779e-07   p_cons 9.945119e-01   p_joint 8.849558e-06

Joint ci ratio: 8.554100e-01	ci left: 5.381735e-06	ci right 1.360718e-05	k: 20	n:2270000
Cons ci ratio: 1.932530e-04	ci left: 9.944167e-01	ci right 9.946093e-01	k: 2257546	n:2270000
KS ci ratio: 2.771857e+00	ci left: 1.115322e-08	ci right 2.454466e-06	k: 1	n:2270000
AGT   2270000 perm   2202 sec   (1031 perm/sec)   p_kst 4.405286e-07   p_cons 9.945137e-01   p_joint 8.810573e-06

Joint ci ratio: 8.554100e-01	ci left: 5.358131e-06	ci right 1.354750e-05	k: 20	n:2280000
Cons ci ratio: 1.928375e-04	ci left: 9.944164e-01	ci right 9.946086e-01	k: 2267490	n:2280000
KS ci ratio: 2.771857e+00	ci left: 1.110430e-08	ci right 2.443701e-06	k: 1	n:2280000
AGT   2280000 perm   2220 sec   (1027 perm/sec)   p_kst 4.385965e-07   p_cons 9.945132e-01   p_joint 8.771930e-06

Joint ci ratio: 8.554100e-01	ci left: 5.334733e-06	ci right 1.348834e-05	k: 20	n:2290000
Cons ci ratio: 1.924093e-04	ci left: 9.944170e-01	ci right 9.946088e-01	k: 2277436	n:2290000
KS ci ratio: 2.771857e+00	ci left: 1.105581e-08	ci right 2.433030e-06	k: 1	n:2290000
AGT   2290000 perm   2238 sec   (1023 perm/sec)   p_kst 4.366812e-07   p_cons 9.945135e-01   p_joint 8.733624e-06

Joint ci ratio: 8.554100e-01	ci left: 5.311538e-06	ci right 1.342970e-05	k: 20	n:2300000
Cons ci ratio: 1.919992e-04	ci left: 9.944167e-01	ci right 9.946081e-01	k: 2287380	n:2300000
KS ci ratio: 2.771857e+00	ci left: 1.100774e-08	ci right 2.422451e-06	k: 1	n:2300000
AGT   2300000 perm   2256 sec   (1020 perm/sec)   p_kst 4.347826e-07   p_cons 9.945130e-01   p_joint 8.695652e-06

Joint ci ratio: 8.554101e-01	ci left: 5.288544e-06	ci right 1.337156e-05	k: 20	n:2310000
Cons ci ratio: 1.915766e-04	ci left: 9.944173e-01	ci right 9.946083e-01	k: 2297326	n:2310000
KS ci ratio: 2.771857e+00	ci left: 1.096009e-08	ci right 2.411964e-06	k: 1	n:2310000
AGT   2310000 perm   2273 sec   (1016 perm/sec)   p_kst 4.329004e-07   p_cons 9.945134e-01   p_joint 8.658009e-06

Joint ci ratio: 8.554101e-01	ci left: 5.265749e-06	ci right 1.331392e-05	k: 20	n:2320000
Cons ci ratio: 1.911038e-04	ci left: 9.944210e-01	ci right 9.946114e-01	k: 2307279	n:2320000
KS ci ratio: 2.771857e+00	ci left: 1.091285e-08	ci right 2.401568e-06	k: 1	n:2320000
AGT   2320000 perm   2291 sec   (1013 perm/sec)   p_kst 4.310345e-07   p_cons 9.945168e-01   p_joint 8.620690e-06

Joint ci ratio: 8.554101e-01	ci left: 5.243149e-06	ci right 1.325678e-05	k: 20	n:2330000
Cons ci ratio: 1.906420e-04	ci left: 9.944241e-01	ci right 9.946141e-01	k: 2317231	n:2330000
KS ci ratio: 2.771857e+00	ci left: 1.086601e-08	ci right 2.391261e-06	k: 1	n:2330000
AGT   2330000 perm   2310 sec   (1009 perm/sec)   p_kst 4.291845e-07   p_cons 9.945197e-01   p_joint 8.583691e-06

Joint ci ratio: 8.357427e-01	ci left: 5.555278e-06	ci right 1.371823e-05	k: 21	n:2340000
Cons ci ratio: 1.902729e-04	ci left: 9.944221e-01	ci right 9.946117e-01	k: 2327171	n:2340000
KS ci ratio: 2.771857e+00	ci left: 1.081958e-08	ci right 2.381042e-06	k: 1	n:2340000
AGT   2340000 perm   2328 sec   (1005 perm/sec)   p_kst 4.273504e-07   p_cons 9.945175e-01   p_joint 8.974359e-06

Joint ci ratio: 8.357427e-01	ci left: 5.531638e-06	ci right 1.365985e-05	k: 21	n:2350000
Cons ci ratio: 1.898096e-04	ci left: 9.944256e-01	ci right 9.946148e-01	k: 2337124	n:2350000
KS ci ratio: 2.771857e+00	ci left: 1.077354e-08	ci right 2.370910e-06	k: 1	n:2350000
AGT   2350000 perm   2346 sec   (1002 perm/sec)   p_kst 4.255319e-07   p_cons 9.945209e-01   p_joint 8.936170e-06

Joint ci ratio: 8.357427e-01	ci left: 5.508199e-06	ci right 1.360197e-05	k: 21	n:2360000
Cons ci ratio: 1.893938e-04	ci left: 9.944266e-01	ci right 9.946154e-01	k: 2347071	n:2360000
KS ci ratio: 2.771857e+00	ci left: 1.072788e-08	ci right 2.360864e-06	k: 1	n:2360000
AGT   2360000 perm   2365 sec   (998 perm/sec)   p_kst 4.237288e-07   p_cons 9.945216e-01   p_joint 8.898305e-06

Joint ci ratio: 9.799965e-01	ci left: 3.542361e-06	ci right 1.043889e-05	k: 15	n:2370000
Cons ci ratio: 1.890905e-04	ci left: 9.944212e-01	ci right 9.946097e-01	k: 2357003	n:2370000
KS ci ratio: 2.771857e+00	ci left: 1.068262e-08	ci right 2.350902e-06	k: 1	n:2370000
AGT   2370000 perm   2383 sec   (995 perm/sec)   p_kst 4.219409e-07   p_cons 9.945160e-01   p_joint 6.329114e-06

Joint ci ratio: 9.799965e-01	ci left: 3.527477e-06	ci right 1.039503e-05	k: 15	n:2380000
Cons ci ratio: 1.886213e-04	ci left: 9.944256e-01	ci right 9.946136e-01	k: 2366958	n:2380000
KS ci ratio: 2.771857e+00	ci left: 1.063773e-08	ci right 2.341024e-06	k: 1	n:2380000
AGT   2380000 perm   2401 sec   (991 perm/sec)   p_kst 4.201681e-07   p_cons 9.945202e-01   p_joint 6.302521e-06

Joint ci ratio: 9.799965e-01	ci left: 3.512718e-06	ci right 1.035153e-05	k: 15	n:2390000
Cons ci ratio: 1.882927e-04	ci left: 9.944219e-01	ci right 9.946096e-01	k: 2376894	n:2390000
KS ci ratio: 2.771857e+00	ci left: 1.059323e-08	ci right 2.331229e-06	k: 1	n:2390000
AGT   2390000 perm   2419 sec   (988 perm/sec)   p_kst 4.184100e-07   p_cons 9.945163e-01   p_joint 6.276151e-06

Joint ci ratio: 9.799965e-01	ci left: 3.498082e-06	ci right 1.030840e-05	k: 15	n:2400000
Cons ci ratio: 1.879370e-04	ci left: 9.944199e-01	ci right 9.946072e-01	k: 2386834	n:2400000
KS ci ratio: 2.771857e+00	ci left: 1.054909e-08	ci right 2.321516e-06	k: 1	n:2400000
AGT   2400000 perm   2438 sec   (985 perm/sec)   p_kst 4.166667e-07   p_cons 9.945142e-01   p_joint 6.250000e-06

Joint ci ratio: 9.799965e-01	ci left: 3.483567e-06	ci right 1.026563e-05	k: 15	n:2410000
Cons ci ratio: 1.875905e-04	ci left: 9.944175e-01	ci right 9.946045e-01	k: 2396773	n:2410000
KS ci ratio: 2.771857e+00	ci left: 1.050531e-08	ci right 2.311883e-06	k: 1	n:2410000
AGT   2410000 perm   2456 sec   (981 perm/sec)   p_kst 4.149378e-07   p_cons 9.945116e-01   p_joint 6.224066e-06

Joint ci ratio: 9.799966e-01	ci left: 3.469172e-06	ci right 1.022321e-05	k: 15	n:2420000
Cons ci ratio: 1.873025e-04	ci left: 9.944119e-01	ci right 9.945985e-01	k: 2406704	n:2420000
KS ci ratio: 2.771857e+00	ci left: 1.046190e-08	ci right 2.302330e-06	k: 1	n:2420000
AGT   2420000 perm   2475 sec   (978 perm/sec)   p_kst 4.132231e-07   p_cons 9.945058e-01   p_joint 6.198347e-06

Joint ci ratio: 9.799966e-01	ci left: 3.454895e-06	ci right 1.018114e-05	k: 15	n:2430000
Cons ci ratio: 1.869382e-04	ci left: 9.944108e-01	ci right 9.945971e-01	k: 2416646	n:2430000
KS ci ratio: 2.771857e+00	ci left: 1.041885e-08	ci right 2.292855e-06	k: 1	n:2430000
AGT   2430000 perm   2493 sec   (975 perm/sec)   p_kst 4.115226e-07   p_cons 9.945045e-01   p_joint 6.172840e-06

Joint ci ratio: 9.799966e-01	ci left: 3.440736e-06	ci right 1.013941e-05	k: 15	n:2440000
Cons ci ratio: 1.866599e-04	ci left: 9.944048e-01	ci right 9.945908e-01	k: 2426576	n:2440000
KS ci ratio: 2.771857e+00	ci left: 1.037615e-08	ci right 2.283458e-06	k: 1	n:2440000
AGT   2440000 perm   2512 sec   (971 perm/sec)   p_kst 4.098361e-07   p_cons 9.944984e-01   p_joint 6.147541e-06

Joint ci ratio: 9.799966e-01	ci left: 3.426692e-06	ci right 1.009803e-05	k: 15	n:2450000
Cons ci ratio: 1.862645e-04	ci left: 9.944058e-01	ci right 9.945914e-01	k: 2436523	n:2450000
KS ci ratio: 2.771857e+00	ci left: 1.033380e-08	ci right 2.274138e-06	k: 1	n:2450000
AGT   2450000 perm   2531 sec   (968 perm/sec)   p_kst 4.081633e-07   p_cons 9.944992e-01   p_joint 6.122449e-06

Joint ci ratio: 9.799966e-01	ci left: 3.412762e-06	ci right 1.005698e-05	k: 15	n:2460000
Cons ci ratio: 1.859614e-04	ci left: 9.944015e-01	ci right 9.945868e-01	k: 2446457	n:2460000
KS ci ratio: 2.771857e+00	ci left: 1.029179e-08	ci right 2.264894e-06	k: 1	n:2460000
AGT   2460000 perm   2550 sec   (965 perm/sec)   p_kst 4.065041e-07   p_cons 9.944947e-01   p_joint 6.097561e-06

Joint ci ratio: 9.799966e-01	ci left: 3.398946e-06	ci right 1.001626e-05	k: 15	n:2470000
Cons ci ratio: 1.855773e-04	ci left: 9.944021e-01	ci right 9.945870e-01	k: 2456403	n:2470000
KS ci ratio: 2.771857e+00	ci left: 1.025012e-08	ci right 2.255724e-06	k: 1	n:2470000
AGT   2470000 perm   2569 sec   (961 perm/sec)   p_kst 4.048583e-07   p_cons 9.944951e-01   p_joint 6.072874e-06

Joint ci ratio: 9.799966e-01	ci left: 3.385240e-06	ci right 9.975875e-06	k: 15	n:2480000
Cons ci ratio: 1.852161e-04	ci left: 9.944015e-01	ci right 9.945861e-01	k: 2466346	n:2480000
KS ci ratio: 2.771857e+00	ci left: 1.020879e-08	ci right 2.246628e-06	k: 1	n:2480000
AGT   2480000 perm   2588 sec   (958 perm/sec)   p_kst 4.032258e-07   p_cons 9.944944e-01   p_joint 6.048387e-06

Joint ci ratio: 1.239610e+00	ci left: 1.652762e-06	ci right 6.861356e-06	k: 9	n:2490000
Cons ci ratio: 1.849450e-04	ci left: 9.943956e-01	ci right 9.945799e-01	k: 2476276	n:2490000
KS ci ratio: 2.771857e+00	ci left: 1.016779e-08	ci right 2.237606e-06	k: 1	n:2490000
AGT   2490000 perm   2607 sec   (955 perm/sec)   p_kst 4.016064e-07   p_cons 9.944884e-01   p_joint 3.614458e-06

Joint ci ratio: 1.239610e+00	ci left: 1.646151e-06	ci right 6.833910e-06	k: 9	n:2500000
Cons ci ratio: 1.845201e-04	ci left: 9.943991e-01	ci right 9.945830e-01	k: 2486229	n:2500000
KS ci ratio: 2.771857e+00	ci left: 1.012712e-08	ci right 2.228655e-06	k: 1	n:2500000
AGT   2500000 perm   2626 sec   (952 perm/sec)   p_kst 4.000000e-07   p_cons 9.944916e-01   p_joint 3.600000e-06

Joint ci ratio: 1.239610e+00	ci left: 1.639592e-06	ci right 6.806684e-06	k: 9	n:2510000
Cons ci ratio: 1.842453e-04	ci left: 9.943937e-01	ci right 9.945773e-01	k: 2496160	n:2510000
KS ci ratio: 2.771857e+00	ci left: 1.008678e-08	ci right 2.219776e-06	k: 1	n:2510000
AGT   2510000 perm   2646 sec   (949 perm/sec)   p_kst 3.984064e-07   p_cons 9.944861e-01   p_joint 3.585657e-06

Joint ci ratio: 1.239610e+00	ci left: 1.633086e-06	ci right 6.779673e-06	k: 9	n:2520000
Cons ci ratio: 1.839183e-04	ci left: 9.943915e-01	ci right 9.945748e-01	k: 2506099	n:2520000
KS ci ratio: 2.771857e+00	ci left: 1.004675e-08	ci right 2.210968e-06	k: 1	n:2520000
AGT   2520000 perm   2665 sec   (946 perm/sec)   p_kst 3.968254e-07   p_cons 9.944837e-01   p_joint 3.571429e-06

Joint ci ratio: 1.239610e+00	ci left: 1.626631e-06	ci right 6.752876e-06	k: 9	n:2530000
Cons ci ratio: 1.835468e-04	ci left: 9.943922e-01	ci right 9.945751e-01	k: 2516045	n:2530000
KS ci ratio: 2.771857e+00	ci left: 1.000704e-08	ci right 2.202229e-06	k: 1	n:2530000
AGT   2530000 perm   2685 sec   (942 perm/sec)   p_kst 3.952569e-07   p_cons 9.944842e-01   p_joint 3.557312e-06

Joint ci ratio: 1.239610e+00	ci left: 1.620227e-06	ci right 6.726290e-06	k: 9	n:2540000
Cons ci ratio: 1.831117e-04	ci left: 9.943968e-01	ci right 9.945793e-01	k: 2526001	n:2540000
KS ci ratio: 2.771857e+00	ci left: 9.967641e-09	ci right 2.193558e-06	k: 1	n:2540000
AGT   2540000 perm   2704 sec   (939 perm/sec)   p_kst 3.937008e-07   p_cons 9.944886e-01   p_joint 3.543307e-06

Joint ci ratio: 1.239610e+00	ci left: 1.613873e-06	ci right 6.699912e-06	k: 9	n:2550000
Cons ci ratio: 1.827319e-04	ci left: 9.943982e-01	ci right 9.945803e-01	k: 2535949	n:2550000
KS ci ratio: 2.771857e+00	ci left: 9.928552e-09	ci right 2.184956e-06	k: 1	n:2550000
AGT   2550000 perm   2724 sec   (936 perm/sec)   p_kst 3.921569e-07   p_cons 9.944898e-01   p_joint 3.529412e-06

Joint ci ratio: 1.306664e+00	ci left: 1.349154e-06	ci right 6.157486e-06	k: 8	n:2560000
Cons ci ratio: 1.824130e-04	ci left: 9.943960e-01	ci right 9.945778e-01	k: 2545888	n:2560000
KS ci ratio: 2.771857e+00	ci left: 9.889769e-09	ci right 2.176421e-06	k: 1	n:2560000
AGT   2560000 perm   2744 sec   (933 perm/sec)   p_kst 3.906250e-07   p_cons 9.944875e-01   p_joint 3.125000e-06

Joint ci ratio: 1.306664e+00	ci left: 1.343904e-06	ci right 6.133527e-06	k: 8	n:2570000
Cons ci ratio: 1.820505e-04	ci left: 9.943967e-01	ci right 9.945781e-01	k: 2555834	n:2570000
KS ci ratio: 2.771857e+00	ci left: 9.851287e-09	ci right 2.167953e-06	k: 1	n:2570000
AGT   2570000 perm   2764 sec   (930 perm/sec)   p_kst 3.891051e-07   p_cons 9.944879e-01   p_joint 3.112840e-06

Joint ci ratio: 1.306664e+00	ci left: 1.338696e-06	ci right 6.109754e-06	k: 8	n:2580000
Cons ci ratio: 1.817094e-04	ci left: 9.943961e-01	ci right 9.945772e-01	k: 2565777	n:2580000
KS ci ratio: 2.771857e+00	ci left: 9.813104e-09	ci right 2.159550e-06	k: 1	n:2580000
AGT   2580000 perm   2784 sec   (927 perm/sec)   p_kst 3.875969e-07   p_cons 9.944872e-01   p_joint 3.100775e-06

Joint ci ratio: 1.306664e+00	ci left: 1.333527e-06	ci right 6.086164e-06	k: 8	n:2590000
Cons ci ratio: 1.814340e-04	ci left: 9.943917e-01	ci right 9.945725e-01	k: 2575710	n:2590000
KS ci ratio: 2.771857e+00	ci left: 9.775216e-09	ci right 2.151212e-06	k: 1	n:2590000
AGT   2590000 perm   2804 sec   (924 perm/sec)   p_kst 3.861004e-07   p_cons 9.944826e-01   p_joint 3.088803e-06

Joint ci ratio: 1.306664e+00	ci left: 1.328398e-06	ci right 6.062756e-06	k: 8	n:2600000
Cons ci ratio: 1.811090e-04	ci left: 9.943904e-01	ci right 9.945708e-01	k: 2585651	n:2600000
KS ci ratio: 2.771857e+00	ci left: 9.737618e-09	ci right 2.142938e-06	k: 1	n:2600000
AGT   2600000 perm   2824 sec   (921 perm/sec)   p_kst 3.846154e-07   p_cons 9.944812e-01   p_joint 3.076923e-06

Joint ci ratio: 1.306664e+00	ci left: 1.323308e-06	ci right 6.039527e-06	k: 8	n:2610000
Cons ci ratio: 1.808047e-04	ci left: 9.943879e-01	ci right 9.945681e-01	k: 2595589	n:2610000
KS ci ratio: 2.771857e+00	ci left: 9.700310e-09	ci right 2.134727e-06	k: 1	n:2610000
AGT   2610000 perm   2844 sec   (918 perm/sec)   p_kst 3.831418e-07   p_cons 9.944785e-01   p_joint 3.065134e-06

Joint ci ratio: 1.306664e+00	ci left: 1.318257e-06	ci right 6.016476e-06	k: 8	n:2620000
Cons ci ratio: 1.805144e-04	ci left: 9.943847e-01	ci right 9.945646e-01	k: 2605525	n:2620000
KS ci ratio: 2.771857e+00	ci left: 9.663285e-09	ci right 2.126580e-06	k: 1	n:2620000
AGT   2620000 perm   2864 sec   (915 perm/sec)   p_kst 3.816794e-07   p_cons 9.944752e-01   p_joint 3.053435e-06

Joint ci ratio: 1.239610e+00	ci left: 1.564782e-06	ci right 6.496113e-06	k: 9	n:2630000
Cons ci ratio: 1.801817e-04	ci left: 9.943842e-01	ci right 9.945638e-01	k: 2615468	n:2630000
KS ci ratio: 2.771857e+00	ci left: 9.626543e-09	ci right 2.118494e-06	k: 1	n:2630000
AGT   2630000 perm   2884 sec   (912 perm/sec)   p_kst 3.802281e-07   p_cons 9.944745e-01   p_joint 3.422053e-06

Joint ci ratio: 1.239610e+00	ci left: 1.558855e-06	ci right 6.471507e-06	k: 9	n:2640000
Cons ci ratio: 1.798386e-04	ci left: 9.943845e-01	ci right 9.945637e-01	k: 2625413	n:2640000
KS ci ratio: 2.771857e+00	ci left: 9.590079e-09	ci right 2.110469e-06	k: 1	n:2640000
AGT   2640000 perm   2904 sec   (909 perm/sec)   p_kst 3.787879e-07   p_cons 9.944746e-01   p_joint 3.409091e-06

Joint ci ratio: 1.239610e+00	ci left: 1.552972e-06	ci right 6.447086e-06	k: 9	n:2650000
Cons ci ratio: 1.794419e-04	ci left: 9.943882e-01	ci right 9.945670e-01	k: 2635367	n:2650000
KS ci ratio: 2.771857e+00	ci left: 9.553890e-09	ci right 2.102505e-06	k: 1	n:2650000
AGT   2650000 perm   2924 sec   (906 perm/sec)   p_kst 3.773585e-07   p_cons 9.944781e-01   p_joint 3.396226e-06

Joint ci ratio: 1.239610e+00	ci left: 1.547134e-06	ci right 6.422849e-06	k: 9	n:2660000
Cons ci ratio: 1.791029e-04	ci left: 9.943884e-01	ci right 9.945669e-01	k: 2645312	n:2660000
KS ci ratio: 2.771857e+00	ci left: 9.517973e-09	ci right 2.094601e-06	k: 1	n:2660000
AGT   2660000 perm   2944 sec   (903 perm/sec)   p_kst 3.759398e-07   p_cons 9.944782e-01   p_joint 3.383459e-06

Joint ci ratio: 1.239610e+00	ci left: 1.541339e-06	ci right 6.398793e-06	k: 9	n:2670000
Cons ci ratio: 1.786927e-04	ci left: 9.943932e-01	ci right 9.945713e-01	k: 2655269	n:2670000
KS ci ratio: 2.771857e+00	ci left: 9.482325e-09	ci right 2.086756e-06	k: 1	n:2670000
AGT   2670000 perm   2965 sec   (901 perm/sec)   p_kst 3.745318e-07   p_cons 9.944828e-01   p_joint 3.370787e-06

Joint ci ratio: 1.239610e+00	ci left: 1.535588e-06	ci right 6.374917e-06	k: 9	n:2680000
Cons ci ratio: 1.783154e-04	ci left: 9.943961e-01	ci right 9.945738e-01	k: 2665221	n:2680000
KS ci ratio: 2.771857e+00	ci left: 9.446943e-09	ci right 2.078970e-06	k: 1	n:2680000
AGT   2680000 perm   2986 sec   (898 perm/sec)   p_kst 3.731343e-07   p_cons 9.944854e-01   p_joint 3.358209e-06

Joint ci ratio: 1.239610e+00	ci left: 1.529880e-06	ci right 6.351219e-06	k: 9	n:2690000
Cons ci ratio: 1.779888e-04	ci left: 9.943959e-01	ci right 9.945733e-01	k: 2675165	n:2690000
KS ci ratio: 2.771857e+00	ci left: 9.411825e-09	ci right 2.071241e-06	k: 1	n:2690000
AGT   2690000 perm   3007 sec   (895 perm/sec)   p_kst 3.717472e-07   p_cons 9.944851e-01   p_joint 3.345725e-06

Joint ci ratio: 1.239610e+00	ci left: 1.524213e-06	ci right 6.327696e-06	k: 9	n:2700000
Cons ci ratio: 1.776760e-04	ci left: 9.943950e-01	ci right 9.945721e-01	k: 2685107	n:2700000
KS ci ratio: 2.771857e+00	ci left: 9.376966e-09	ci right 2.063570e-06	k: 1	n:2700000
AGT   2700000 perm   3027 sec   (892 perm/sec)   p_kst 3.703704e-07   p_cons 9.944841e-01   p_joint 3.333333e-06

Joint ci ratio: 1.239610e+00	ci left: 1.518589e-06	ci right 6.304346e-06	k: 9	n:2710000
Cons ci ratio: 1.773290e-04	ci left: 9.943964e-01	ci right 9.945731e-01	k: 2695055	n:2710000
KS ci ratio: 2.771857e+00	ci left: 9.342365e-09	ci right 2.055955e-06	k: 1	n:2710000
AGT   2710000 perm   3048 sec   (889 perm/sec)   p_kst 3.690037e-07   p_cons 9.944852e-01   p_joint 3.321033e-06

Joint ci ratio: 1.239610e+00	ci left: 1.513006e-06	ci right 6.281168e-06	k: 9	n:2720000
Cons ci ratio: 1.769722e-04	ci left: 9.943984e-01	ci right 9.945748e-01	k: 2705005	n:2720000
KS ci ratio: 2.771857e+00	ci left: 9.308018e-09	ci right 2.048397e-06	k: 1	n:2720000
AGT   2720000 perm   3069 sec   (886 perm/sec)   p_kst 3.676471e-07   p_cons 9.944871e-01   p_joint 3.308824e-06

Joint ci ratio: 1.239610e+00	ci left: 1.507464e-06	ci right 6.258160e-06	k: 9	n:2730000
Cons ci ratio: 1.767237e-04	ci left: 9.943938e-01	ci right 9.945699e-01	k: 2714937	n:2730000
KS ci ratio: 2.771857e+00	ci left: 9.273922e-09	ci right 2.040893e-06	k: 1	n:2730000
AGT   2730000 perm   3090 sec   (884 perm/sec)   p_kst 3.663004e-07   p_cons 9.944824e-01   p_joint 3.296703e-06

Joint ci ratio: 1.239610e+00	ci left: 1.501962e-06	ci right 6.235321e-06	k: 9	n:2740000
Cons ci ratio: 1.764057e-04	ci left: 9.943937e-01	ci right 9.945695e-01	k: 2724881	n:2740000
KS ci ratio: 2.771857e+00	ci left: 9.240076e-09	ci right 2.033445e-06	k: 1	n:2740000
AGT   2740000 perm   3112 sec   (880 perm/sec)   p_kst 3.649635e-07   p_cons 9.944821e-01   p_joint 3.284672e-06

Joint ci ratio: 1.239610e+00	ci left: 1.496500e-06	ci right 6.212647e-06	k: 9	n:2750000
Cons ci ratio: 1.760953e-04	ci left: 9.943932e-01	ci right 9.945687e-01	k: 2734824	n:2750000
KS ci ratio: 2.771857e+00	ci left: 9.206476e-09	ci right 2.026050e-06	k: 1	n:2750000
AGT   2750000 perm   3133 sec   (878 perm/sec)   p_kst 3.636364e-07   p_cons 9.944815e-01   p_joint 3.272727e-06

Joint ci ratio: 1.239610e+00	ci left: 1.491078e-06	ci right 6.190137e-06	k: 9	n:2760000
Cons ci ratio: 1.757401e-04	ci left: 9.943956e-01	ci right 9.945707e-01	k: 2744775	n:2760000
KS ci ratio: 2.771857e+00	ci left: 9.173119e-09	ci right 2.018710e-06	k: 1	n:2760000
AGT   2760000 perm   3154 sec   (875 perm/sec)   p_kst 3.623188e-07   p_cons 9.944837e-01   p_joint 3.260870e-06

Joint ci ratio: 1.239610e+00	ci left: 1.485695e-06	ci right 6.167790e-06	k: 9	n:2770000
Cons ci ratio: 1.754331e-04	ci left: 9.943951e-01	ci right 9.945699e-01	k: 2754718	n:2770000
KS ci ratio: 2.771857e+00	ci left: 9.140003e-09	ci right 2.011422e-06	k: 1	n:2770000
AGT   2770000 perm   3176 sec   (872 perm/sec)   p_kst 3.610108e-07   p_cons 9.944830e-01   p_joint 3.249097e-06

Joint ci ratio: 1.239610e+00	ci left: 1.480351e-06	ci right 6.145604e-06	k: 9	n:2780000
Cons ci ratio: 1.751278e-04	ci left: 9.943946e-01	ci right 9.945691e-01	k: 2764661	n:2780000
KS ci ratio: 2.771857e+00	ci left: 9.107125e-09	ci right 2.004187e-06	k: 1	n:2780000
AGT   2780000 perm   3198 sec   (869 perm/sec)   p_kst 3.597122e-07   p_cons 9.944824e-01   p_joint 3.237410e-06

Joint ci ratio: 1.239610e+00	ci left: 1.475045e-06	ci right 6.123577e-06	k: 9	n:2790000
Cons ci ratio: 1.748640e-04	ci left: 9.943916e-01	ci right 9.945658e-01	k: 2774597	n:2790000
KS ci ratio: 2.771857e+00	ci left: 9.074483e-09	ci right 1.997003e-06	k: 1	n:2790000
AGT   2790000 perm   3221 sec   (866 perm/sec)   p_kst 3.584229e-07   p_cons 9.944792e-01   p_joint 3.225806e-06

Joint ci ratio: 1.239610e+00	ci left: 1.469777e-06	ci right 6.101707e-06	k: 9	n:2800000
Cons ci ratio: 1.744765e-04	ci left: 9.943965e-01	ci right 9.945703e-01	k: 2784555	n:2800000
KS ci ratio: 2.771857e+00	ci left: 9.042074e-09	ci right 1.989871e-06	k: 1	n:2800000
AGT   2800000 perm   3242 sec   (864 perm/sec)   p_kst 3.571429e-07   p_cons 9.944839e-01   p_joint 3.214286e-06

Joint ci ratio: 1.239610e+00	ci left: 1.464547e-06	ci right 6.079992e-06	k: 9	n:2810000
Cons ci ratio: 1.742100e-04	ci left: 9.943938e-01	ci right 9.945674e-01	k: 2794492	n:2810000
KS ci ratio: 2.771857e+00	ci left: 9.009896e-09	ci right 1.982790e-06	k: 1	n:2810000
AGT   2810000 perm   3265 sec   (861 perm/sec)   p_kst 3.558719e-07   p_cons 9.944811e-01   p_joint 3.202847e-06

Joint ci ratio: 1.239610e+00	ci left: 1.459353e-06	ci right 6.058432e-06	k: 9	n:2820000
Cons ci ratio: 1.739222e-04	ci left: 9.943926e-01	ci right 9.945659e-01	k: 2804433	n:2820000
KS ci ratio: 2.771857e+00	ci left: 8.977946e-09	ci right 1.975758e-06	k: 1	n:2820000
AGT   2820000 perm   3286 sec   (858 perm/sec)   p_kst 3.546099e-07   p_cons 9.944798e-01   p_joint 3.191489e-06

Joint ci ratio: 1.239610e+00	ci left: 1.454196e-06	ci right 6.037024e-06	k: 9	n:2830000
Cons ci ratio: 1.736191e-04	ci left: 9.943925e-01	ci right 9.945655e-01	k: 2814377	n:2830000
KS ci ratio: 2.771857e+00	ci left: 8.946222e-09	ci right 1.968777e-06	k: 1	n:2830000
AGT   2830000 perm   3308 sec   (856 perm/sec)   p_kst 3.533569e-07   p_cons 9.944795e-01   p_joint 3.180212e-06

Joint ci ratio: 1.239610e+00	ci left: 1.449076e-06	ci right 6.015767e-06	k: 9	n:2840000
Cons ci ratio: 1.733787e-04	ci left: 9.943885e-01	ci right 9.945612e-01	k: 2824310	n:2840000
KS ci ratio: 2.771857e+00	ci left: 8.914721e-09	ci right 1.961845e-06	k: 1	n:2840000
AGT   2840000 perm   3329 sec   (853 perm/sec)   p_kst 3.521127e-07   p_cons 9.944754e-01   p_joint 3.169014e-06

Joint ci ratio: 1.239610e+00	ci left: 1.443992e-06	ci right 5.994659e-06	k: 9	n:2850000
Cons ci ratio: 1.730231e-04	ci left: 9.943919e-01	ci right 9.945643e-01	k: 2834264	n:2850000
KS ci ratio: 2.771857e+00	ci left: 8.883441e-09	ci right 1.954961e-06	k: 1	n:2850000
AGT   2850000 perm   3351 sec   (850 perm/sec)   p_kst 3.508772e-07   p_cons 9.944786e-01   p_joint 3.157895e-06

Joint ci ratio: 1.239610e+00	ci left: 1.438943e-06	ci right 5.973699e-06	k: 9	n:2860000
Cons ci ratio: 1.727742e-04	ci left: 9.943886e-01	ci right 9.945608e-01	k: 2844199	n:2860000
KS ci ratio: 2.771857e+00	ci left: 8.852380e-09	ci right 1.948126e-06	k: 1	n:2860000
AGT   2860000 perm   3374 sec   (848 perm/sec)   p_kst 3.496503e-07   p_cons 9.944752e-01   p_joint 3.146853e-06

Joint ci ratio: 1.239610e+00	ci left: 1.433929e-06	ci right 5.952885e-06	k: 9	n:2870000
Cons ci ratio: 1.724223e-04	ci left: 9.943920e-01	ci right 9.945638e-01	k: 2854153	n:2870000
KS ci ratio: 2.771857e+00	ci left: 8.821536e-09	ci right 1.941338e-06	k: 1	n:2870000
AGT   2870000 perm   3396 sec   (845 perm/sec)   p_kst 3.484321e-07   p_cons 9.944784e-01   p_joint 3.135889e-06

Joint ci ratio: 1.239610e+00	ci left: 1.428950e-06	ci right 5.932215e-06	k: 9	n:2880000
Cons ci ratio: 1.721161e-04	ci left: 9.943926e-01	ci right 9.945641e-01	k: 2864099	n:2880000
KS ci ratio: 2.771857e+00	ci left: 8.790905e-09	ci right 1.934597e-06	k: 1	n:2880000
AGT   2880000 perm   3418 sec   (842 perm/sec)   p_kst 3.472222e-07   p_cons 9.944788e-01   p_joint 3.125000e-06

Joint ci ratio: 1.239610e+00	ci left: 1.424005e-06	ci right 5.911688e-06	k: 9	n:2890000
Cons ci ratio: 1.717519e-04	ci left: 9.943970e-01	ci right 9.945681e-01	k: 2874056	n:2890000
KS ci ratio: 2.771857e+00	ci left: 8.760487e-09	ci right 1.927903e-06	k: 1	n:2890000
AGT   2890000 perm   3440 sec   (840 perm/sec)   p_kst 3.460208e-07   p_cons 9.944830e-01   p_joint 3.114187e-06

Joint ci ratio: 1.239610e+00	ci left: 1.419095e-06	ci right 5.891303e-06	k: 9	n:2900000
Cons ci ratio: 1.714815e-04	ci left: 9.943954e-01	ci right 9.945663e-01	k: 2883996	n:2900000
KS ci ratio: 2.771857e+00	ci left: 8.730279e-09	ci right 1.921255e-06	k: 1	n:2900000
AGT   2900000 perm   3462 sec   (838 perm/sec)   p_kst 3.448276e-07   p_cons 9.944814e-01   p_joint 3.103448e-06

Joint ci ratio: 1.239610e+00	ci left: 1.414219e-06	ci right 5.871058e-06	k: 9	n:2910000
Cons ci ratio: 1.711749e-04	ci left: 9.943964e-01	ci right 9.945669e-01	k: 2893943	n:2910000
KS ci ratio: 2.771857e+00	ci left: 8.700278e-09	ci right 1.914653e-06	k: 1	n:2910000
AGT   2910000 perm   3485 sec   (835 perm/sec)   p_kst 3.436426e-07   p_cons 9.944821e-01   p_joint 3.092784e-06

Joint ci ratio: 1.239611e+00	ci left: 1.409375e-06	ci right 5.850952e-06	k: 9	n:2920000
Cons ci ratio: 1.709872e-04	ci left: 9.943897e-01	ci right 9.945600e-01	k: 2903868	n:2920000
KS ci ratio: 2.771857e+00	ci left: 8.670482e-09	ci right 1.908096e-06	k: 1	n:2920000
AGT   2920000 perm   3507 sec   (833 perm/sec)   p_kst 3.424658e-07   p_cons 9.944753e-01   p_joint 3.082192e-06

Joint ci ratio: 1.239611e+00	ci left: 1.404565e-06	ci right 5.830983e-06	k: 9	n:2930000
Cons ci ratio: 1.706832e-04	ci left: 9.943906e-01	ci right 9.945607e-01	k: 2913815	n:2930000
KS ci ratio: 2.771857e+00	ci left: 8.640890e-09	ci right 1.901583e-06	k: 1	n:2930000
AGT   2930000 perm   3529 sec   (830 perm/sec)   p_kst 3.412969e-07   p_cons 9.944761e-01   p_joint 3.071672e-06

Joint ci ratio: 1.239611e+00	ci left: 1.399788e-06	ci right 5.811150e-06	k: 9	n:2940000
Cons ci ratio: 1.703756e-04	ci left: 9.943918e-01	ci right 9.945616e-01	k: 2923763	n:2940000
KS ci ratio: 2.771857e+00	ci left: 8.611499e-09	ci right 1.895115e-06	k: 1	n:2940000
AGT   2940000 perm   3551 sec   (828 perm/sec)   p_kst 3.401361e-07   p_cons 9.944772e-01   p_joint 3.061224e-06

Joint ci ratio: 1.239611e+00	ci left: 1.395043e-06	ci right 5.791451e-06	k: 9	n:2950000
Cons ci ratio: 1.700223e-04	ci left: 9.943962e-01	ci right 9.945656e-01	k: 2933720	n:2950000
KS ci ratio: 2.771857e+00	ci left: 8.582308e-09	ci right 1.888691e-06	k: 1	n:2950000
AGT   2950000 perm   3573 sec   (826 perm/sec)   p_kst 3.389831e-07   p_cons 9.944814e-01   p_joint 3.050847e-06

Joint ci ratio: 1.239611e+00	ci left: 1.390330e-06	ci right 5.771885e-06	k: 9	n:2960000
Cons ci ratio: 1.697235e-04	ci left: 9.943971e-01	ci right 9.945662e-01	k: 2943667	n:2960000
KS ci ratio: 2.771857e+00	ci left: 8.553313e-09	ci right 1.882311e-06	k: 1	n:2960000
AGT   2960000 perm   3596 sec   (823 perm/sec)   p_kst 3.378378e-07   p_cons 9.944821e-01   p_joint 3.040541e-06

Joint ci ratio: 1.239611e+00	ci left: 1.385648e-06	ci right 5.752451e-06	k: 9	n:2970000
Cons ci ratio: 1.693949e-04	ci left: 9.944000e-01	ci right 9.945688e-01	k: 2953620	n:2970000
KS ci ratio: 2.771857e+00	ci left: 8.524514e-09	ci right 1.875973e-06	k: 1	n:2970000
AGT   2970000 perm   3619 sec   (821 perm/sec)   p_kst 3.367003e-07   p_cons 9.944848e-01   p_joint 3.030303e-06

Joint ci ratio: 1.239611e+00	ci left: 1.380999e-06	ci right 5.733148e-06	k: 9	n:2980000
Cons ci ratio: 1.691149e-04	ci left: 9.943998e-01	ci right 9.945683e-01	k: 2963564	n:2980000
KS ci ratio: 2.771857e+00	ci left: 8.495909e-09	ci right 1.869678e-06	k: 1	n:2980000
AGT   2980000 perm   3642 sec   (818 perm/sec)   p_kst 3.355705e-07   p_cons 9.944846e-01   p_joint 3.020134e-06

Joint ci ratio: 1.239611e+00	ci left: 1.376380e-06	ci right 5.713973e-06	k: 9	n:2990000
Cons ci ratio: 1.688773e-04	ci left: 9.943970e-01	ci right 9.945653e-01	k: 2973500	n:2990000
KS ci ratio: 2.771857e+00	ci left: 8.467494e-09	ci right 1.863424e-06	k: 1	n:2990000
AGT   2990000 perm   3664 sec   (816 perm/sec)   p_kst 3.344482e-07   p_cons 9.944816e-01   p_joint 3.010033e-06

Joint ci ratio: 1.239611e+00	ci left: 1.371792e-06	ci right 5.694927e-06	k: 9	n:3000000
Cons ci ratio: 1.685896e-04	ci left: 9.943975e-01	ci right 9.945655e-01	k: 2983446	n:3000000
KS ci ratio: 2.771857e+00	ci left: 8.439269e-09	ci right 1.857213e-06	k: 1	n:3000000
AGT   3000000 perm   3687 sec   (814 perm/sec)   p_kst 3.333333e-07   p_cons 9.944820e-01   p_joint 3.000000e-06

Joint ci ratio: 1.239611e+00	ci left: 1.367234e-06	ci right 5.676007e-06	k: 9	n:3010000
Cons ci ratio: 1.683746e-04	ci left: 9.943934e-01	ci right 9.945611e-01	k: 2993378	n:3010000
KS ci ratio: 2.771857e+00	ci left: 8.411232e-09	ci right 1.851043e-06	k: 1	n:3010000
AGT   3010000 perm   3710 sec   (811 perm/sec)   p_kst 3.322259e-07   p_cons 9.944777e-01   p_joint 2.990033e-06

Joint ci ratio: 1.239611e+00	ci left: 1.362707e-06	ci right 5.657212e-06	k: 9	n:3020000
Cons ci ratio: 1.680539e-04	ci left: 9.943963e-01	ci right 9.945637e-01	k: 3003331	n:3020000
KS ci ratio: 2.771857e+00	ci left: 8.383380e-09	ci right 1.844914e-06	k: 1	n:3020000
AGT   3020000 perm   3733 sec   (809 perm/sec)   p_kst 3.311258e-07   p_cons 9.944805e-01   p_joint 2.980132e-06

Joint ci ratio: 1.239611e+00	ci left: 1.358210e-06	ci right 5.638541e-06	k: 9	n:3030000
Cons ci ratio: 1.677451e-04	ci left: 9.943985e-01	ci right 9.945656e-01	k: 3013282	n:3030000
KS ci ratio: 2.771857e+00	ci left: 8.355712e-09	ci right 1.838825e-06	k: 1	n:3030000
AGT   3030000 perm   3756 sec   (807 perm/sec)   p_kst 3.300330e-07   p_cons 9.944825e-01   p_joint 2.970297e-06

Joint ci ratio: 1.239611e+00	ci left: 1.353742e-06	ci right 5.619994e-06	k: 9	n:3040000
Cons ci ratio: 1.673927e-04	ci left: 9.944036e-01	ci right 9.945704e-01	k: 3023242	n:3040000
KS ci ratio: 2.771857e+00	ci left: 8.328226e-09	ci right 1.832776e-06	k: 1	n:3040000
AGT   3040000 perm   3779 sec   (804 perm/sec)   p_kst 3.289474e-07   p_cons 9.944875e-01   p_joint 2.960526e-06

Joint ci ratio: 1.239611e+00	ci left: 1.349304e-06	ci right 5.601567e-06	k: 9	n:3050000
Cons ci ratio: 1.671524e-04	ci left: 9.944015e-01	ci right 9.945681e-01	k: 3033180	n:3050000
KS ci ratio: 2.771857e+00	ci left: 8.300921e-09	ci right 1.826767e-06	k: 1	n:3050000
AGT   3050000 perm   3803 sec   (802 perm/sec)   p_kst 3.278689e-07   p_cons 9.944852e-01   p_joint 2.950820e-06

Joint ci ratio: 1.239611e+00	ci left: 1.344894e-06	ci right 5.583262e-06	k: 9	n:3060000
Cons ci ratio: 1.668187e-04	ci left: 9.944056e-01	ci right 9.945719e-01	k: 3043137	n:3060000
KS ci ratio: 2.771857e+00	ci left: 8.273793e-09	ci right 1.820797e-06	k: 1	n:3060000
AGT   3060000 perm   3826 sec   (800 perm/sec)   p_kst 3.267974e-07   p_cons 9.944892e-01   p_joint 2.941176e-06

Joint ci ratio: 1.239611e+00	ci left: 1.340513e-06	ci right 5.565075e-06	k: 9	n:3070000
Cons ci ratio: 1.665561e-04	ci left: 9.944052e-01	ci right 9.945711e-01	k: 3053080	n:3070000
KS ci ratio: 2.771857e+00	ci left: 8.246843e-09	ci right 1.814866e-06	k: 1	n:3070000
AGT   3070000 perm   3849 sec   (798 perm/sec)   p_kst 3.257329e-07   p_cons 9.944886e-01   p_joint 2.931596e-06

Joint ci ratio: 1.239611e+00	ci left: 1.336161e-06	ci right 5.547007e-06	k: 9	n:3080000
Cons ci ratio: 1.662554e-04	ci left: 9.944073e-01	ci right 9.945729e-01	k: 3063031	n:3080000
KS ci ratio: 2.771857e+00	ci left: 8.220068e-09	ci right 1.808974e-06	k: 1	n:3080000
AGT   3080000 perm   3873 sec   (795 perm/sec)   p_kst 3.246753e-07   p_cons 9.944906e-01   p_joint 2.922078e-06

Joint ci ratio: 1.239611e+00	ci left: 1.331837e-06	ci right 5.529055e-06	k: 9	n:3090000
Cons ci ratio: 1.659415e-04	ci left: 9.944104e-01	ci right 9.945757e-01	k: 3072985	n:3090000
KS ci ratio: 2.771857e+00	ci left: 8.193465e-09	ci right 1.803120e-06	k: 1	n:3090000
AGT   3090000 perm   3897 sec   (793 perm/sec)   p_kst 3.236246e-07   p_cons 9.944935e-01   p_joint 2.912621e-06

Joint ci ratio: 1.239611e+00	ci left: 1.327541e-06	ci right 5.511220e-06	k: 9	n:3100000
Cons ci ratio: 1.656782e-04	ci left: 9.944102e-01	ci right 9.945753e-01	k: 3082929	n:3100000
KS ci ratio: 2.771857e+00	ci left: 8.167035e-09	ci right 1.797303e-06	k: 1	n:3100000
AGT   3100000 perm   3921 sec   (791 perm/sec)   p_kst 3.225806e-07   p_cons 9.944932e-01   p_joint 2.903226e-06

Joint ci ratio: 1.239611e+00	ci left: 1.323272e-06	ci right 5.493499e-06	k: 9	n:3110000
Cons ci ratio: 1.654356e-04	ci left: 9.944088e-01	ci right 9.945736e-01	k: 3092869	n:3110000
KS ci ratio: 2.771857e+00	ci left: 8.140774e-09	ci right 1.791524e-06	k: 1	n:3110000
AGT   3110000 perm   3945 sec   (788 perm/sec)   p_kst 3.215434e-07   p_cons 9.944916e-01   p_joint 2.893891e-06

Joint ci ratio: 1.239611e+00	ci left: 1.319031e-06	ci right 5.475891e-06	k: 9	n:3120000
Cons ci ratio: 1.651360e-04	ci left: 9.944112e-01	ci right 9.945757e-01	k: 3102821	n:3120000
KS ci ratio: 2.771857e+00	ci left: 8.114682e-09	ci right 1.785782e-06	k: 1	n:3120000
AGT   3120000 perm   3969 sec   (786 perm/sec)   p_kst 3.205128e-07   p_cons 9.944939e-01   p_joint 2.884615e-06

Joint ci ratio: 1.239611e+00	ci left: 1.314817e-06	ci right 5.458397e-06	k: 9	n:3130000
Cons ci ratio: 1.649246e-04	ci left: 9.944078e-01	ci right 9.945721e-01	k: 3112755	n:3130000
KS ci ratio: 2.771857e+00	ci left: 8.088757e-09	ci right 1.780076e-06	k: 1	n:3130000
AGT   3130000 perm   3992 sec   (784 perm/sec)   p_kst 3.194888e-07   p_cons 9.944904e-01   p_joint 2.875399e-06

Joint ci ratio: 1.239611e+00	ci left: 1.310629e-06	ci right 5.441013e-06	k: 9	n:3140000
Cons ci ratio: 1.646660e-04	ci left: 9.944076e-01	ci right 9.945717e-01	k: 3122699	n:3140000
KS ci ratio: 2.771857e+00	ci left: 8.062996e-09	ci right 1.774407e-06	k: 1	n:3140000
AGT   3140000 perm   4016 sec   (782 perm/sec)   p_kst 3.184713e-07   p_cons 9.944901e-01   p_joint 2.866242e-06

Joint ci ratio: 1.239611e+00	ci left: 1.306468e-06	ci right 5.423740e-06	k: 9	n:3150000
Cons ci ratio: 1.643849e-04	ci left: 9.944091e-01	ci right 9.945729e-01	k: 3132648	n:3150000
KS ci ratio: 2.771857e+00	ci left: 8.037399e-09	ci right 1.768774e-06	k: 1	n:3150000
AGT   3150000 perm   4040 sec   (780 perm/sec)   p_kst 3.174603e-07   p_cons 9.944914e-01   p_joint 2.857143e-06

Joint ci ratio: 1.239611e+00	ci left: 1.302334e-06	ci right 5.406576e-06	k: 9	n:3160000
Cons ci ratio: 1.641621e-04	ci left: 9.944067e-01	ci right 9.945703e-01	k: 3142585	n:3160000
KS ci ratio: 2.771857e+00	ci left: 8.011965e-09	ci right 1.763177e-06	k: 1	n:3160000
AGT   3160000 perm   4064 sec   (778 perm/sec)   p_kst 3.164557e-07   p_cons 9.944889e-01   p_joint 2.848101e-06

Joint ci ratio: 1.239611e+00	ci left: 1.298226e-06	ci right 5.389521e-06	k: 9	n:3170000
Cons ci ratio: 1.638222e-04	ci left: 9.944123e-01	ci right 9.945755e-01	k: 3152547	n:3170000
KS ci ratio: 2.771857e+00	ci left: 7.986690e-09	ci right 1.757615e-06	k: 1	n:3170000
AGT   3170000 perm   4088 sec   (775 perm/sec)   p_kst 3.154574e-07   p_cons 9.944943e-01   p_joint 2.839117e-06

Joint ci ratio: 1.239611e+00	ci left: 1.294143e-06	ci right 5.372573e-06	k: 9	n:3180000
Cons ci ratio: 1.636252e-04	ci left: 9.944083e-01	ci right 9.945713e-01	k: 3162479	n:3180000
KS ci ratio: 2.771857e+00	ci left: 7.961575e-09	ci right 1.752088e-06	k: 1	n:3180000
AGT   3180000 perm   4112 sec   (773 perm/sec)   p_kst 3.144654e-07   p_cons 9.944903e-01   p_joint 2.830189e-06

Joint ci ratio: 1.239611e+00	ci left: 1.290086e-06	ci right 5.355731e-06	k: 9	n:3190000
Cons ci ratio: 1.633073e-04	ci left: 9.944125e-01	ci right 9.945753e-01	k: 3172437	n:3190000
KS ci ratio: 2.771857e+00	ci left: 7.936617e-09	ci right 1.746595e-06	k: 1	n:3190000
AGT   3190000 perm   4136 sec   (771 perm/sec)   p_kst 3.134796e-07   p_cons 9.944944e-01   p_joint 2.821317e-06

Joint ci ratio: 1.239611e+00	ci left: 1.286055e-06	ci right 5.338994e-06	k: 9	n:3200000
Cons ci ratio: 1.630005e-04	ci left: 9.944162e-01	ci right 9.945786e-01	k: 3182393	n:3200000
KS ci ratio: 2.771857e+00	ci left: 7.911815e-09	ci right 1.741137e-06	k: 1	n:3200000
AGT   3200000 perm   4159 sec   (769 perm/sec)   p_kst 3.125000e-07   p_cons 9.944978e-01   p_joint 2.812500e-06

Joint ci ratio: 1.239611e+00	ci left: 1.282048e-06	ci right 5.322362e-06	k: 9	n:3210000
Cons ci ratio: 1.627694e-04	ci left: 9.944147e-01	ci right 9.945769e-01	k: 3192333	n:3210000
KS ci ratio: 2.771857e+00	ci left: 7.887168e-09	ci right 1.735713e-06	k: 1	n:3210000
AGT   3210000 perm   4183 sec   (767 perm/sec)   p_kst 3.115265e-07   p_cons 9.944963e-01   p_joint 2.803738e-06

Joint ci ratio: 1.239611e+00	ci left: 1.278067e-06	ci right 5.305833e-06	k: 9	n:3220000
Cons ci ratio: 1.625117e-04	ci left: 9.944152e-01	ci right 9.945771e-01	k: 3202279	n:3220000
KS ci ratio: 2.771857e+00	ci left: 7.862673e-09	ci right 1.730323e-06	k: 1	n:3220000
AGT   3220000 perm   4208 sec   (765 perm/sec)   p_kst 3.105590e-07   p_cons 9.944966e-01   p_joint 2.795031e-06

Joint ci ratio: 1.239611e+00	ci left: 1.274110e-06	ci right 5.289406e-06	k: 9	n:3230000
Cons ci ratio: 1.622873e-04	ci left: 9.944134e-01	ci right 9.945751e-01	k: 3212218	n:3230000
KS ci ratio: 2.771857e+00	ci left: 7.838331e-09	ci right 1.724966e-06	k: 1	n:3230000
AGT   3230000 perm   4232 sec   (763 perm/sec)   p_kst 3.095975e-07   p_cons 9.944947e-01   p_joint 2.786378e-06

Joint ci ratio: 1.239611e+00	ci left: 1.270178e-06	ci right 5.273081e-06	k: 9	n:3240000
Cons ci ratio: 1.620501e-04	ci left: 9.944127e-01	ci right 9.945741e-01	k: 3222160	n:3240000
KS ci ratio: 2.771857e+00	ci left: 7.814138e-09	ci right 1.719642e-06	k: 1	n:3240000
AGT   3240000 perm   4256 sec   (761 perm/sec)   p_kst 3.086420e-07   p_cons 9.944938e-01   p_joint 2.777778e-06

Joint ci ratio: 1.239611e+00	ci left: 1.266269e-06	ci right 5.256856e-06	k: 9	n:3250000
Cons ci ratio: 1.617094e-04	ci left: 9.944190e-01	ci right 9.945801e-01	k: 3232125	n:3250000
KS ci ratio: 2.771857e+00	ci left: 7.790095e-09	ci right 1.714351e-06	k: 1	n:3250000
AGT   3250000 perm   4282 sec   (759 perm/sec)   p_kst 3.076923e-07   p_cons 9.945000e-01   p_joint 2.769231e-06

Joint ci ratio: 1.239611e+00	ci left: 1.262385e-06	ci right 5.240731e-06	k: 9	n:3260000
Cons ci ratio: 1.614702e-04	ci left: 9.944185e-01	ci right 9.945794e-01	k: 3242068	n:3260000
KS ci ratio: 2.771857e+00	ci left: 7.766199e-09	ci right 1.709092e-06	k: 1	n:3260000
AGT   3260000 perm   4307 sec   (757 perm/sec)   p_kst 3.067485e-07   p_cons 9.944994e-01   p_joint 2.760736e-06

Joint ci ratio: 1.239611e+00	ci left: 1.258525e-06	ci right 5.224704e-06	k: 9	n:3270000
Cons ci ratio: 1.612186e-04	ci left: 9.944189e-01	ci right 9.945796e-01	k: 3252014	n:3270000
KS ci ratio: 2.771857e+00	ci left: 7.742449e-09	ci right 1.703865e-06	k: 1	n:3270000
AGT   3270000 perm   4332 sec   (755 perm/sec)   p_kst 3.058104e-07   p_cons 9.944997e-01   p_joint 2.752294e-06

Joint ci ratio: 1.239611e+00	ci left: 1.254688e-06	ci right 5.208775e-06	k: 9	n:3280000
Cons ci ratio: 1.609457e-04	ci left: 9.944209e-01	ci right 9.945813e-01	k: 3261965	n:3280000
KS ci ratio: 2.771857e+00	ci left: 7.718844e-09	ci right 1.698671e-06	k: 1	n:3280000
AGT   3280000 perm   4357 sec   (753 perm/sec)   p_kst 3.048780e-07   p_cons 9.945015e-01   p_joint 2.743902e-06

Joint ci ratio: 1.239611e+00	ci left: 1.250874e-06	ci right 5.192943e-06	k: 9	n:3290000
Cons ci ratio: 1.606786e-04	ci left: 9.944226e-01	ci right 9.945827e-01	k: 3271915	n:3290000
KS ci ratio: 2.771857e+00	ci left: 7.695382e-09	ci right 1.693507e-06	k: 1	n:3290000
AGT   3290000 perm   4382 sec   (751 perm/sec)   p_kst 3.039514e-07   p_cons 9.945030e-01   p_joint 2.735562e-06

Joint ci ratio: 1.239611e+00	ci left: 1.247083e-06	ci right 5.177207e-06	k: 9	n:3300000
Cons ci ratio: 1.604173e-04	ci left: 9.944239e-01	ci right 9.945837e-01	k: 3281864	n:3300000
KS ci ratio: 2.771857e+00	ci left: 7.672063e-09	ci right 1.688376e-06	k: 1	n:3300000
AGT   3300000 perm   4407 sec   (749 perm/sec)   p_kst 3.030303e-07   p_cons 9.945042e-01   p_joint 2.727273e-06

Joint ci ratio: 1.181922e+00	ci left: 1.448759e-06	ci right 5.555992e-06	k: 10	n:3310000
Cons ci ratio: 1.601750e-04	ci left: 9.944240e-01	ci right 9.945836e-01	k: 3291809	n:3310000
KS ci ratio: 2.771857e+00	ci left: 7.648885e-09	ci right 1.683275e-06	k: 1	n:3310000
AGT   3310000 perm   4432 sec   (747 perm/sec)   p_kst 3.021148e-07   p_cons 9.945042e-01   p_joint 3.021148e-06

Joint ci ratio: 1.181922e+00	ci left: 1.444395e-06	ci right 5.539257e-06	k: 10	n:3320000
Cons ci ratio: 1.599426e-04	ci left: 9.944235e-01	ci right 9.945829e-01	k: 3301752	n:3320000
KS ci ratio: 2.771857e+00	ci left: 7.625846e-09	ci right 1.678205e-06	k: 1	n:3320000
AGT   3320000 perm   4457 sec   (745 perm/sec)   p_kst 3.012048e-07   p_cons 9.945036e-01   p_joint 3.012048e-06

Joint ci ratio: 1.181922e+00	ci left: 1.440058e-06	ci right 5.522622e-06	k: 10	n:3330000
Cons ci ratio: 1.596892e-04	ci left: 9.944245e-01	ci right 9.945836e-01	k: 3311700	n:3330000
KS ci ratio: 2.771857e+00	ci left: 7.602945e-09	ci right 1.673165e-06	k: 1	n:3330000
AGT   3330000 perm   4482 sec   (743 perm/sec)   p_kst 3.003003e-07   p_cons 9.945045e-01   p_joint 3.003003e-06

Joint ci ratio: 1.181922e+00	ci left: 1.435746e-06	ci right 5.506088e-06	k: 10	n:3340000
Cons ci ratio: 1.594633e-04	ci left: 9.944237e-01	ci right 9.945826e-01	k: 3321642	n:3340000
KS ci ratio: 2.771857e+00	ci left: 7.580182e-09	ci right 1.668156e-06	k: 1	n:3340000
AGT   3340000 perm   4508 sec   (741 perm/sec)   p_kst 2.994012e-07   p_cons 9.945036e-01   p_joint 2.994012e-06

Joint ci ratio: 1.181922e+00	ci left: 1.431460e-06	ci right 5.489652e-06	k: 10	n:3350000
Cons ci ratio: 1.592687e-04	ci left: 9.944208e-01	ci right 9.945795e-01	k: 3331577	n:3350000
KS ci ratio: 2.771857e+00	ci left: 7.557555e-09	ci right 1.663176e-06	k: 1	n:3350000
AGT   3350000 perm   4534 sec   (739 perm/sec)   p_kst 2.985075e-07   p_cons 9.945006e-01   p_joint 2.985075e-06

Joint ci ratio: 1.131604e+00	ci left: 1.634275e-06	ci right 5.857742e-06	k: 11	n:3360000
Cons ci ratio: 1.589926e-04	ci left: 9.944236e-01	ci right 9.945821e-01	k: 3341531	n:3360000
KS ci ratio: 2.771857e+00	ci left: 7.535062e-09	ci right 1.658226e-06	k: 1	n:3360000
AGT   3360000 perm   4559 sec   (737 perm/sec)   p_kst 2.976190e-07   p_cons 9.945033e-01   p_joint 3.273810e-06

Joint ci ratio: 1.131604e+00	ci left: 1.629426e-06	ci right 5.840360e-06	k: 11	n:3370000
Cons ci ratio: 1.587566e-04	ci left: 9.944238e-01	ci right 9.945819e-01	k: 3351476	n:3370000
KS ci ratio: 2.771857e+00	ci left: 7.512703e-09	ci right 1.653306e-06	k: 1	n:3370000
AGT   3370000 perm   4585 sec   (735 perm/sec)   p_kst 2.967359e-07   p_cons 9.945033e-01   p_joint 3.264095e-06

Joint ci ratio: 1.131604e+00	ci left: 1.624605e-06	ci right 5.823081e-06	k: 11	n:3380000
Cons ci ratio: 1.584488e-04	ci left: 9.944289e-01	ci right 9.945868e-01	k: 3361438	n:3380000
KS ci ratio: 2.771857e+00	ci left: 7.490476e-09	ci right 1.648414e-06	k: 1	n:3380000
AGT   3380000 perm   4611 sec   (733 perm/sec)   p_kst 2.958580e-07   p_cons 9.945083e-01   p_joint 3.254438e-06

Joint ci ratio: 1.131604e+00	ci left: 1.619812e-06	ci right 5.805904e-06	k: 11	n:3390000
Cons ci ratio: 1.581683e-04	ci left: 9.944323e-01	ci right 9.945899e-01	k: 3371394	n:3390000
KS ci ratio: 2.771857e+00	ci left: 7.468380e-09	ci right 1.643552e-06	k: 1	n:3390000
AGT   3390000 perm   4637 sec   (731 perm/sec)   p_kst 2.949853e-07   p_cons 9.945115e-01   p_joint 3.244838e-06

Joint ci ratio: 1.131604e+00	ci left: 1.615048e-06	ci right 5.788827e-06	k: 11	n:3400000
Cons ci ratio: 1.579445e-04	ci left: 9.944318e-01	ci right 9.945891e-01	k: 3381337	n:3400000
KS ci ratio: 2.771857e+00	ci left: 7.446414e-09	ci right 1.638718e-06	k: 1	n:3400000
AGT   3400000 perm   4663 sec   (729 perm/sec)   p_kst 2.941176e-07   p_cons 9.945109e-01   p_joint 3.235294e-06

Joint ci ratio: 1.131604e+00	ci left: 1.610312e-06	ci right 5.771851e-06	k: 11	n:3410000
Cons ci ratio: 1.577047e-04	ci left: 9.944325e-01	ci right 9.945896e-01	k: 3391284	n:3410000
KS ci ratio: 2.771857e+00	ci left: 7.424577e-09	ci right 1.633912e-06	k: 1	n:3410000
AGT   3410000 perm   4689 sec   (727 perm/sec)   p_kst 2.932551e-07   p_cons 9.945114e-01   p_joint 3.225806e-06

Joint ci ratio: 1.131604e+00	ci left: 1.605604e-06	ci right 5.754975e-06	k: 11	n:3420000
Cons ci ratio: 1.574534e-04	ci left: 9.944340e-01	ci right 9.945909e-01	k: 3401234	n:3420000
KS ci ratio: 2.771857e+00	ci left: 7.402868e-09	ci right 1.629134e-06	k: 1	n:3420000
AGT   3420000 perm   4716 sec   (725 perm/sec)   p_kst 2.923977e-07   p_cons 9.945129e-01   p_joint 3.216374e-06

Joint ci ratio: 1.087210e+00	ci left: 1.807749e-06	ci right 6.111241e-06	k: 12	n:3430000
Cons ci ratio: 1.572116e-04	ci left: 9.944350e-01	ci right 9.945916e-01	k: 3411182	n:3430000
KS ci ratio: 2.771857e+00	ci left: 7.381285e-09	ci right 1.624385e-06	k: 1	n:3430000
AGT   3430000 perm   4742 sec   (723 perm/sec)   p_kst 2.915452e-07   p_cons 9.945137e-01   p_joint 3.498542e-06

Joint ci ratio: 1.087210e+00	ci left: 1.802494e-06	ci right 6.093476e-06	k: 12	n:3440000
Cons ci ratio: 1.569709e-04	ci left: 9.944359e-01	ci right 9.945923e-01	k: 3421130	n:3440000
KS ci ratio: 2.771857e+00	ci left: 7.359828e-09	ci right 1.619663e-06	k: 1	n:3440000
AGT   3440000 perm   4768 sec   (721 perm/sec)   p_kst 2.906977e-07   p_cons 9.945145e-01   p_joint 3.488372e-06

Joint ci ratio: 1.239611e+00	ci left: 1.192862e-06	ci right 4.952111e-06	k: 9	n:3450000
Cons ci ratio: 1.567272e-04	ci left: 9.944372e-01	ci right 9.945933e-01	k: 3431079	n:3450000
KS ci ratio: 2.771857e+00	ci left: 7.338495e-09	ci right 1.614968e-06	k: 1	n:3450000
AGT   3450000 perm   4794 sec   (720 perm/sec)   p_kst 2.898551e-07   p_cons 9.945157e-01   p_joint 2.608696e-06

Joint ci ratio: 1.239611e+00	ci left: 1.189415e-06	ci right 4.937799e-06	k: 9	n:3460000
Cons ci ratio: 1.565054e-04	ci left: 9.944369e-01	ci right 9.945929e-01	k: 3441023	n:3460000
KS ci ratio: 2.771857e+00	ci left: 7.317286e-09	ci right 1.610300e-06	k: 1	n:3460000
AGT   3460000 perm   4821 sec   (718 perm/sec)   p_kst 2.890173e-07   p_cons 9.945153e-01   p_joint 2.601156e-06

Joint ci ratio: 1.239611e+00	ci left: 1.185987e-06	ci right 4.923569e-06	k: 9	n:3470000
Cons ci ratio: 1.563546e-04	ci left: 9.944318e-01	ci right 9.945876e-01	k: 3450950	n:3470000
KS ci ratio: 2.771857e+00	ci left: 7.296198e-09	ci right 1.605660e-06	k: 1	n:3470000
AGT   3470000 perm   4847 sec   (716 perm/sec)   p_kst 2.881844e-07   p_cons 9.945101e-01   p_joint 2.593660e-06

Joint ci ratio: 1.239611e+00	ci left: 1.182579e-06	ci right 4.909421e-06	k: 9	n:3480000
Cons ci ratio: 1.560809e-04	ci left: 9.944353e-01	ci right 9.945908e-01	k: 3460907	n:3480000
KS ci ratio: 2.771857e+00	ci left: 7.275232e-09	ci right 1.601046e-06	k: 1	n:3480000
AGT   3480000 perm   4873 sec   (714 perm/sec)   p_kst 2.873563e-07   p_cons 9.945135e-01   p_joint 2.586207e-06

Joint ci ratio: 1.239611e+00	ci left: 1.179191e-06	ci right 4.895353e-06	k: 9	n:3490000
Cons ci ratio: 1.558085e-04	ci left: 9.944389e-01	ci right 9.945941e-01	k: 3470864	n:3490000
KS ci ratio: 2.771857e+00	ci left: 7.254386e-09	ci right 1.596458e-06	k: 1	n:3490000
AGT   3490000 perm   4899 sec   (712 perm/sec)   p_kst 2.865330e-07   p_cons 9.945169e-01   p_joint 2.578797e-06

Joint ci ratio: 1.239611e+00	ci left: 1.175822e-06	ci right 4.881367e-06	k: 9	n:3500000
Cons ci ratio: 1.555946e-04	ci left: 9.944384e-01	ci right 9.945934e-01	k: 3480807	n:3500000
KS ci ratio: 2.771857e+00	ci left: 7.233659e-09	ci right 1.591897e-06	k: 1	n:3500000
AGT   3500000 perm   4925 sec   (711 perm/sec)   p_kst 2.857143e-07   p_cons 9.945163e-01   p_joint 2.571429e-06

Joint ci ratio: 1.239611e+00	ci left: 1.172472e-06	ci right 4.867460e-06	k: 9	n:3510000
Cons ci ratio: 1.554140e-04	ci left: 9.944356e-01	ci right 9.945904e-01	k: 3490742	n:3510000
KS ci ratio: 2.771857e+00	ci left: 7.213051e-09	ci right 1.587362e-06	k: 1	n:3510000
AGT   3510000 perm   4952 sec   (709 perm/sec)   p_kst 2.849003e-07   p_cons 9.945134e-01   p_joint 2.564103e-06

Joint ci ratio: 1.239611e+00	ci left: 1.169141e-06	ci right 4.853632e-06	k: 9	n:3520000
Cons ci ratio: 1.551694e-04	ci left: 9.944374e-01	ci right 9.945919e-01	k: 3500693	n:3520000
KS ci ratio: 2.771857e+00	ci left: 7.192559e-09	ci right 1.582852e-06	k: 1	n:3520000
AGT   3520000 perm   4978 sec   (707 perm/sec)   p_kst 2.840909e-07   p_cons 9.945151e-01   p_joint 2.556818e-06

Joint ci ratio: 1.239611e+00	ci left: 1.165829e-06	ci right 4.839882e-06	k: 9	n:3530000
Cons ci ratio: 1.549621e-04	ci left: 9.944366e-01	ci right 9.945910e-01	k: 3510635	n:3530000
KS ci ratio: 2.771857e+00	ci left: 7.172184e-09	ci right 1.578368e-06	k: 1	n:3530000
AGT   3530000 perm   5004 sec   (705 perm/sec)   p_kst 2.832861e-07   p_cons 9.945142e-01   p_joint 2.549575e-06

Joint ci ratio: 1.239611e+00	ci left: 1.162535e-06	ci right 4.826210e-06	k: 9	n:3540000
Cons ci ratio: 1.546836e-04	ci left: 9.944409e-01	ci right 9.945950e-01	k: 3520595	n:3540000
KS ci ratio: 2.771857e+00	ci left: 7.151923e-09	ci right 1.573910e-06	k: 1	n:3540000
AGT   3540000 perm   5031 sec   (704 perm/sec)   p_kst 2.824859e-07   p_cons 9.945184e-01   p_joint 2.542373e-06

Joint ci ratio: 1.239611e+00	ci left: 1.159261e-06	ci right 4.812615e-06	k: 9	n:3550000
Cons ci ratio: 1.545221e-04	ci left: 9.944370e-01	ci right 9.945909e-01	k: 3530526	n:3550000
KS ci ratio: 2.771857e+00	ci left: 7.131777e-09	ci right 1.569476e-06	k: 1	n:3550000
AGT   3550000 perm   5057 sec   (702 perm/sec)   p_kst 2.816901e-07   p_cons 9.945144e-01   p_joint 2.535211e-06

Joint ci ratio: 1.239611e+00	ci left: 1.156004e-06	ci right 4.799097e-06	k: 9	n:3560000
Cons ci ratio: 1.542936e-04	ci left: 9.944379e-01	ci right 9.945916e-01	k: 3540474	n:3560000
KS ci ratio: 2.771857e+00	ci left: 7.111744e-09	ci right 1.565067e-06	k: 1	n:3560000
AGT   3560000 perm   5083 sec   (700 perm/sec)   p_kst 2.808989e-07   p_cons 9.945152e-01   p_joint 2.528090e-06

Joint ci ratio: 1.239611e+00	ci left: 1.152766e-06	ci right 4.785654e-06	k: 9	n:3570000
Cons ci ratio: 1.540779e-04	ci left: 9.944380e-01	ci right 9.945915e-01	k: 3550419	n:3570000
KS ci ratio: 2.771857e+00	ci left: 7.091823e-09	ci right 1.560683e-06	k: 1	n:3570000
AGT   3570000 perm   5110 sec   (699 perm/sec)   p_kst 2.801120e-07   p_cons 9.945151e-01   p_joint 2.521008e-06

Joint ci ratio: 1.239611e+00	ci left: 1.149546e-06	ci right 4.772286e-06	k: 9	n:3580000
Cons ci ratio: 1.538829e-04	ci left: 9.944366e-01	ci right 9.945899e-01	k: 3560359	n:3580000
KS ci ratio: 2.771857e+00	ci left: 7.072013e-09	ci right 1.556324e-06	k: 1	n:3580000
AGT   3580000 perm   5137 sec   (697 perm/sec)   p_kst 2.793296e-07   p_cons 9.945137e-01   p_joint 2.513966e-06

Joint ci ratio: 1.239611e+00	ci left: 1.146344e-06	ci right 4.758993e-06	k: 9	n:3590000
Cons ci ratio: 1.537042e-04	ci left: 9.944342e-01	ci right 9.945873e-01	k: 3570295	n:3590000
KS ci ratio: 2.771857e+00	ci left: 7.052314e-09	ci right 1.551989e-06	k: 1	n:3590000
AGT   3590000 perm   5164 sec   (695 perm/sec)   p_kst 2.785515e-07   p_cons 9.945111e-01   p_joint 2.506964e-06

Joint ci ratio: 1.239611e+00	ci left: 1.143160e-06	ci right 4.745773e-06	k: 9	n:3600000
Cons ci ratio: 1.534363e-04	ci left: 9.944382e-01	ci right 9.945910e-01	k: 3580254	n:3600000
KS ci ratio: 2.771857e+00	ci left: 7.032724e-09	ci right 1.547678e-06	k: 1	n:3600000
AGT   3600000 perm   5191 sec   (694 perm/sec)   p_kst 2.777778e-07   p_cons 9.945150e-01   p_joint 2.500000e-06

Joint ci ratio: 1.239611e+00	ci left: 1.139993e-06	ci right 4.732627e-06	k: 9	n:3610000
Cons ci ratio: 1.532320e-04	ci left: 9.944377e-01	ci right 9.945903e-01	k: 3590197	n:3610000
KS ci ratio: 2.771857e+00	ci left: 7.013243e-09	ci right 1.543391e-06	k: 1	n:3610000
AGT   3610000 perm   5218 sec   (692 perm/sec)   p_kst 2.770083e-07   p_cons 9.945144e-01   p_joint 2.493075e-06

Joint ci ratio: 1.239611e+00	ci left: 1.136844e-06	ci right 4.719554e-06	k: 9	n:3620000
Cons ci ratio: 1.529898e-04	ci left: 9.944400e-01	ci right 9.945924e-01	k: 3600150	n:3620000
KS ci ratio: 2.771857e+00	ci left: 6.993870e-09	ci right 1.539127e-06	k: 1	n:3620000
AGT   3620000 perm   5246 sec   (690 perm/sec)   p_kst 2.762431e-07   p_cons 9.945166e-01   p_joint 2.486188e-06

Joint ci ratio: 1.239611e+00	ci left: 1.133712e-06	ci right 4.706552e-06	k: 9	n:3630000
Cons ci ratio: 1.527757e-04	ci left: 9.944403e-01	ci right 9.945925e-01	k: 3610096	n:3630000
KS ci ratio: 2.771857e+00	ci left: 6.974603e-09	ci right 1.534887e-06	k: 1	n:3630000
AGT   3630000 perm   5273 sec   (688 perm/sec)   p_kst 2.754821e-07   p_cons 9.945168e-01   p_joint 2.479339e-06

Joint ci ratio: 1.239611e+00	ci left: 1.130598e-06	ci right 4.693622e-06	k: 9	n:3640000
Cons ci ratio: 1.525702e-04	ci left: 9.944401e-01	ci right 9.945921e-01	k: 3620040	n:3640000
KS ci ratio: 2.771857e+00	ci left: 6.955442e-09	ci right 1.530670e-06	k: 1	n:3640000
AGT   3640000 perm   5300 sec   (687 perm/sec)   p_kst 2.747253e-07   p_cons 9.945165e-01   p_joint 2.472527e-06

Joint ci ratio: 1.239611e+00	ci left: 1.127500e-06	ci right 4.680763e-06	k: 9	n:3650000
Cons ci ratio: 1.523578e-04	ci left: 9.944404e-01	ci right 9.945922e-01	k: 3629986	n:3650000
KS ci ratio: 2.771857e+00	ci left: 6.936386e-09	ci right 1.526477e-06	k: 1	n:3650000
AGT   3650000 perm   5328 sec   (685 perm/sec)   p_kst 2.739726e-07   p_cons 9.945167e-01   p_joint 2.465753e-06

Joint ci ratio: 1.239611e+00	ci left: 1.124419e-06	ci right 4.667974e-06	k: 9	n:3660000
Cons ci ratio: 1.521273e-04	ci left: 9.944421e-01	ci right 9.945937e-01	k: 3639937	n:3660000
KS ci ratio: 2.771857e+00	ci left: 6.917434e-09	ci right 1.522306e-06	k: 1	n:3660000
AGT   3660000 perm   5355 sec   (683 perm/sec)   p_kst 2.732240e-07   p_cons 9.945183e-01   p_joint 2.459016e-06

Joint ci ratio: 1.239611e+00	ci left: 1.121356e-06	ci right 4.655255e-06	k: 9	n:3670000
Cons ci ratio: 1.519661e-04	ci left: 9.944389e-01	ci right 9.945903e-01	k: 3649870	n:3670000
KS ci ratio: 2.771857e+00	ci left: 6.898585e-09	ci right 1.518158e-06	k: 1	n:3670000
AGT   3670000 perm   5383 sec   (682 perm/sec)   p_kst 2.724796e-07   p_cons 9.945150e-01   p_joint 2.452316e-06

Joint ci ratio: 1.239611e+00	ci left: 1.118308e-06	ci right 4.642605e-06	k: 9	n:3680000
Cons ci ratio: 1.517790e-04	ci left: 9.944376e-01	ci right 9.945888e-01	k: 3659810	n:3680000
KS ci ratio: 2.771857e+00	ci left: 6.879839e-09	ci right 1.514033e-06	k: 1	n:3680000
AGT   3680000 perm   5411 sec   (680 perm/sec)   p_kst 2.717391e-07   p_cons 9.945136e-01   p_joint 2.445652e-06

Joint ci ratio: 1.239611e+00	ci left: 1.115278e-06	ci right 4.630023e-06	k: 9	n:3690000
Cons ci ratio: 1.516000e-04	ci left: 9.944357e-01	ci right 9.945868e-01	k: 3669748	n:3690000
KS ci ratio: 2.771857e+00	ci left: 6.861195e-09	ci right 1.509930e-06	k: 1	n:3690000
AGT   3690000 perm   5439 sec   (678 perm/sec)   p_kst 2.710027e-07   p_cons 9.945117e-01   p_joint 2.439024e-06

Joint ci ratio: 1.239611e+00	ci left: 1.112264e-06	ci right 4.617509e-06	k: 9	n:3700000
Cons ci ratio: 1.513617e-04	ci left: 9.944383e-01	ci right 9.945891e-01	k: 3679702	n:3700000
KS ci ratio: 2.771857e+00	ci left: 6.842651e-09	ci right 1.505849e-06	k: 1	n:3700000
AGT   3700000 perm   5467 sec   (677 perm/sec)   p_kst 2.702703e-07   p_cons 9.945141e-01   p_joint 2.432432e-06

Joint ci ratio: 1.239611e+00	ci left: 1.109266e-06	ci right 4.605063e-06	k: 9	n:3710000
Cons ci ratio: 1.511805e-04	ci left: 9.944367e-01	ci right 9.945873e-01	k: 3689641	n:3710000
KS ci ratio: 2.771857e+00	ci left: 6.824207e-09	ci right 1.501790e-06	k: 1	n:3710000
AGT   3710000 perm   5495 sec   (675 perm/sec)   p_kst 2.695418e-07   p_cons 9.945124e-01   p_joint 2.425876e-06

Joint ci ratio: 1.239611e+00	ci left: 1.106284e-06	ci right 4.592684e-06	k: 9	n:3720000
Cons ci ratio: 1.509627e-04	ci left: 9.944379e-01	ci right 9.945883e-01	k: 3699590	n:3720000
KS ci ratio: 2.771857e+00	ci left: 6.805862e-09	ci right 1.497753e-06	k: 1	n:3720000
AGT   3720000 perm   5523 sec   (674 perm/sec)   p_kst 2.688172e-07   p_cons 9.945134e-01   p_joint 2.419355e-06

Joint ci ratio: 1.239611e+00	ci left: 1.103318e-06	ci right 4.580371e-06	k: 9	n:3730000
Cons ci ratio: 1.507644e-04	ci left: 9.944377e-01	ci right 9.945879e-01	k: 3709534	n:3730000
KS ci ratio: 2.771857e+00	ci left: 6.787616e-09	ci right 1.493737e-06	k: 1	n:3730000
AGT   3730000 perm   5550 sec   (672 perm/sec)   p_kst 2.680965e-07   p_cons 9.945131e-01   p_joint 2.412869e-06

Joint ci ratio: 1.239611e+00	ci left: 1.100368e-06	ci right 4.568124e-06	k: 9	n:3740000
Cons ci ratio: 1.505779e-04	ci left: 9.944366e-01	ci right 9.945867e-01	k: 3719475	n:3740000
KS ci ratio: 2.771857e+00	ci left: 6.769467e-09	ci right 1.489743e-06	k: 1	n:3740000
AGT   3740000 perm   5578 sec   (670 perm/sec)   p_kst 2.673797e-07   p_cons 9.945120e-01   p_joint 2.406417e-06

Joint ci ratio: 1.239611e+00	ci left: 1.097433e-06	ci right 4.555943e-06	k: 9	n:3750000
Cons ci ratio: 1.503628e-04	ci left: 9.944378e-01	ci right 9.945876e-01	k: 3729424	n:3750000
KS ci ratio: 2.771857e+00	ci left: 6.751415e-09	ci right 1.485771e-06	k: 1	n:3750000
AGT   3750000 perm   5607 sec   (669 perm/sec)   p_kst 2.666667e-07   p_cons 9.945131e-01   p_joint 2.400000e-06

Joint ci ratio: 1.239611e+00	ci left: 1.094515e-06	ci right 4.543826e-06	k: 9	n:3760000
Cons ci ratio: 1.501595e-04	ci left: 9.944381e-01	ci right 9.945877e-01	k: 3739370	n:3760000
KS ci ratio: 2.771857e+00	ci left: 6.733460e-09	ci right 1.481819e-06	k: 1	n:3760000
AGT   3760000 perm   5635 sec   (667 perm/sec)   p_kst 2.659574e-07   p_cons 9.945133e-01   p_joint 2.393617e-06

Joint ci ratio: 1.239611e+00	ci left: 1.091611e-06	ci right 4.531773e-06	k: 9	n:3770000
Cons ci ratio: 1.499680e-04	ci left: 9.944376e-01	ci right 9.945871e-01	k: 3749313	n:3770000
KS ci ratio: 2.771857e+00	ci left: 6.715599e-09	ci right 1.477889e-06	k: 1	n:3770000
AGT   3770000 perm   5663 sec   (666 perm/sec)   p_kst 2.652520e-07   p_cons 9.945127e-01   p_joint 2.387268e-06

Joint ci ratio: 1.239611e+00	ci left: 1.088724e-06	ci right 4.519784e-06	k: 9	n:3780000
Cons ci ratio: 1.497663e-04	ci left: 9.944380e-01	ci right 9.945872e-01	k: 3759259	n:3780000
KS ci ratio: 2.771857e+00	ci left: 6.697833e-09	ci right 1.473979e-06	k: 1	n:3780000
AGT   3780000 perm   5692 sec   (664 perm/sec)   p_kst 2.645503e-07   p_cons 9.945130e-01   p_joint 2.380952e-06

Joint ci ratio: 1.239611e+00	ci left: 1.085851e-06	ci right 4.507859e-06	k: 9	n:3790000
Cons ci ratio: 1.495148e-04	ci left: 9.944420e-01	ci right 9.945910e-01	k: 3769219	n:3790000
KS ci ratio: 2.771857e+00	ci left: 6.680160e-09	ci right 1.470090e-06	k: 1	n:3790000
AGT   3790000 perm   5720 sec   (663 perm/sec)   p_kst 2.638522e-07   p_cons 9.945169e-01   p_joint 2.374670e-06

Joint ci ratio: 1.239611e+00	ci left: 1.082993e-06	ci right 4.495996e-06	k: 9	n:3800000
Cons ci ratio: 1.493294e-04	ci left: 9.944413e-01	ci right 9.945901e-01	k: 3779161	n:3800000
KS ci ratio: 2.771857e+00	ci left: 6.662581e-09	ci right 1.466221e-06	k: 1	n:3800000
AGT   3800000 perm   5749 sec   (661 perm/sec)   p_kst 2.631579e-07   p_cons 9.945161e-01   p_joint 2.368421e-06

Joint ci ratio: 1.239611e+00	ci left: 1.080151e-06	ci right 4.484196e-06	k: 9	n:3810000
Cons ci ratio: 1.491266e-04	ci left: 9.944419e-01	ci right 9.945904e-01	k: 3789108	n:3810000
KS ci ratio: 2.771857e+00	ci left: 6.645094e-09	ci right 1.462373e-06	k: 1	n:3810000
AGT   3810000 perm   5777 sec   (659 perm/sec)   p_kst 2.624672e-07   p_cons 9.945165e-01   p_joint 2.362205e-06

Joint ci ratio: 1.239611e+00	ci left: 1.077323e-06	ci right 4.472457e-06	k: 9	n:3820000
Cons ci ratio: 1.488926e-04	ci left: 9.944448e-01	ci right 9.945932e-01	k: 3799064	n:3820000
KS ci ratio: 2.771857e+00	ci left: 6.627698e-09	ci right 1.458545e-06	k: 1	n:3820000
AGT   3820000 perm   5806 sec   (658 perm/sec)   p_kst 2.617801e-07   p_cons 9.945194e-01   p_joint 2.356021e-06

Joint ci ratio: 1.481619e+00	ci left: 5.749073e-07	ci right 3.409781e-06	k: 6	n:3830000
Cons ci ratio: 1.486667e-04	ci left: 9.944472e-01	ci right 9.945954e-01	k: 3809018	n:3830000
KS ci ratio: 2.771857e+00	ci left: 6.610394e-09	ci right 1.454736e-06	k: 1	n:3830000
AGT   3830000 perm   5835 sec   (656 perm/sec)   p_kst 2.610966e-07   p_cons 9.945217e-01   p_joint 1.566580e-06

Joint ci ratio: 1.481619e+00	ci left: 5.734102e-07	ci right 3.400902e-06	k: 6	n:3840000
Cons ci ratio: 1.484596e-04	ci left: 9.944483e-01	ci right 9.945962e-01	k: 3818967	n:3840000
KS ci ratio: 2.771857e+00	ci left: 6.593179e-09	ci right 1.450948e-06	k: 1	n:3840000
AGT   3840000 perm   5863 sec   (655 perm/sec)   p_kst 2.604167e-07   p_cons 9.945227e-01   p_joint 1.562500e-06

Joint ci ratio: 1.481619e+00	ci left: 5.719208e-07	ci right 3.392068e-06	k: 6	n:3850000
Cons ci ratio: 1.482179e-04	ci left: 9.944520e-01	ci right 9.945997e-01	k: 3828926	n:3850000
KS ci ratio: 2.771858e+00	ci left: 6.576054e-09	ci right 1.447179e-06	k: 1	n:3850000
AGT   3850000 perm   5891 sec   (654 perm/sec)   p_kst 2.597403e-07   p_cons 9.945262e-01   p_joint 1.558442e-06

Joint ci ratio: 1.481619e+00	ci left: 5.704391e-07	ci right 3.383280e-06	k: 6	n:3860000
Cons ci ratio: 1.480056e-04	ci left: 9.944536e-01	ci right 9.946011e-01	k: 3838877	n:3860000
KS ci ratio: 2.771858e+00	ci left: 6.559018e-09	ci right 1.443430e-06	k: 1	n:3860000
AGT   3860000 perm   5921 sec   (652 perm/sec)   p_kst 2.590674e-07   p_cons 9.945277e-01   p_joint 1.554404e-06

Joint ci ratio: 1.481619e+00	ci left: 5.689651e-07	ci right 3.374538e-06	k: 6	n:3870000
Cons ci ratio: 1.478328e-04	ci left: 9.944523e-01	ci right 9.945996e-01	k: 3848817	n:3870000
KS ci ratio: 2.771858e+00	ci left: 6.542069e-09	ci right 1.439700e-06	k: 1	n:3870000
AGT   3870000 perm   5950 sec   (650 perm/sec)   p_kst 2.583979e-07   p_cons 9.945264e-01   p_joint 1.550388e-06

Joint ci ratio: 1.481619e+00	ci left: 5.674987e-07	ci right 3.365841e-06	k: 6	n:3880000
Cons ci ratio: 1.476361e-04	ci left: 9.944529e-01	ci right 9.946000e-01	k: 3858764	n:3880000
KS ci ratio: 2.771858e+00	ci left: 6.525208e-09	ci right 1.435990e-06	k: 1	n:3880000
AGT   3880000 perm   5979 sec   (649 perm/sec)   p_kst 2.577320e-07   p_cons 9.945268e-01   p_joint 1.546392e-06

Joint ci ratio: 1.481619e+00	ci left: 5.660399e-07	ci right 3.357188e-06	k: 6	n:3890000
Cons ci ratio: 1.474297e-04	ci left: 9.944542e-01	ci right 9.946011e-01	k: 3868714	n:3890000
KS ci ratio: 2.771858e+00	ci left: 6.508434e-09	ci right 1.432298e-06	k: 1	n:3890000
AGT   3890000 perm   6008 sec   (648 perm/sec)   p_kst 2.570694e-07   p_cons 9.945280e-01   p_joint 1.542416e-06

Joint ci ratio: 1.481619e+00	ci left: 5.645885e-07	ci right 3.348580e-06	k: 6	n:3900000
Cons ci ratio: 1.472242e-04	ci left: 9.944555e-01	ci right 9.946022e-01	k: 3878664	n:3900000
KS ci ratio: 2.771858e+00	ci left: 6.491746e-09	ci right 1.428626e-06	k: 1	n:3900000
AGT   3900000 perm   6037 sec   (646 perm/sec)   p_kst 2.564103e-07   p_cons 9.945292e-01   p_joint 1.538462e-06

Joint ci ratio: 1.481619e+00	ci left: 5.631445e-07	ci right 3.340016e-06	k: 6	n:3910000
Cons ci ratio: 1.470230e-04	ci left: 9.944566e-01	ci right 9.946030e-01	k: 3888613	n:3910000
KS ci ratio: 2.771858e+00	ci left: 6.475143e-09	ci right 1.424972e-06	k: 1	n:3910000
AGT   3910000 perm   6067 sec   (645 perm/sec)   p_kst 2.557545e-07   p_cons 9.945302e-01   p_joint 1.534527e-06

Joint ci ratio: 1.385928e+00	ci left: 7.179501e-07	ci right 3.679250e-06	k: 7	n:3920000
Cons ci ratio: 1.468295e-04	ci left: 9.944571e-01	ci right 9.946034e-01	k: 3898560	n:3920000
KS ci ratio: 2.263212e+00	ci left: 6.178809e-08	ci right 1.843031e-06	k: 2	n:3920000
AGT   3920000 perm   6097 sec   (643 perm/sec)   p_kst 5.102041e-07   p_cons 9.945306e-01   p_joint 1.785714e-06

Joint ci ratio: 1.385928e+00	ci left: 7.161232e-07	ci right 3.669888e-06	k: 7	n:3930000
Cons ci ratio: 1.466607e-04	ci left: 9.944558e-01	ci right 9.946020e-01	k: 3908500	n:3930000
KS ci ratio: 2.263212e+00	ci left: 6.163087e-08	ci right 1.838342e-06	k: 2	n:3930000
AGT   3930000 perm   6127 sec   (641 perm/sec)   p_kst 5.089059e-07   p_cons 9.945293e-01   p_joint 1.781170e-06

Joint ci ratio: 1.385928e+00	ci left: 7.143056e-07	ci right 3.660574e-06	k: 7	n:3940000
Cons ci ratio: 1.464926e-04	ci left: 9.944546e-01	ci right 9.946005e-01	k: 3918440	n:3940000
KS ci ratio: 2.263212e+00	ci left: 6.147444e-08	ci right 1.833676e-06	k: 2	n:3940000
AGT   3940000 perm   6157 sec   (640 perm/sec)   p_kst 5.076142e-07   p_cons 9.945279e-01   p_joint 1.776650e-06

Joint ci ratio: 1.385928e+00	ci left: 7.124973e-07	ci right 3.651307e-06	k: 7	n:3950000
Cons ci ratio: 1.462807e-04	ci left: 9.944566e-01	ci right 9.946024e-01	k: 3928393	n:3950000
KS ci ratio: 2.263212e+00	ci left: 6.131881e-08	ci right 1.829034e-06	k: 2	n:3950000
AGT   3950000 perm   6188 sec   (638 perm/sec)   p_kst 5.063291e-07   p_cons 9.945299e-01   p_joint 1.772152e-06

Joint ci ratio: 1.385928e+00	ci left: 7.106980e-07	ci right 3.642086e-06	k: 7	n:3960000
Cons ci ratio: 1.461207e-04	ci left: 9.944549e-01	ci right 9.946005e-01	k: 3938331	n:3960000
KS ci ratio: 2.263212e+00	ci left: 6.116397e-08	ci right 1.824415e-06	k: 2	n:3960000
AGT   3960000 perm   6218 sec   (637 perm/sec)   p_kst 5.050505e-07   p_cons 9.945280e-01   p_joint 1.767677e-06

Joint ci ratio: 1.385928e+00	ci left: 7.089079e-07	ci right 3.632912e-06	k: 7	n:3970000
Cons ci ratio: 1.459577e-04	ci left: 9.944534e-01	ci right 9.945988e-01	k: 3948270	n:3970000
KS ci ratio: 2.263212e+00	ci left: 6.100990e-08	ci right 1.819819e-06	k: 2	n:3970000
AGT   3970000 perm   6248 sec   (635 perm/sec)   p_kst 5.037783e-07   p_cons 9.945264e-01   p_joint 1.763224e-06

Joint ci ratio: 1.385928e+00	ci left: 7.071267e-07	ci right 3.623784e-06	k: 7	n:3980000
Cons ci ratio: 1.457717e-04	ci left: 9.944537e-01	ci right 9.945989e-01	k: 3958216	n:3980000
KS ci ratio: 2.263212e+00	ci left: 6.085661e-08	ci right 1.815247e-06	k: 2	n:3980000
AGT   3980000 perm   6278 sec   (634 perm/sec)   p_kst 5.025126e-07   p_cons 9.945266e-01   p_joint 1.758794e-06

Joint ci ratio: 1.385928e+00	ci left: 7.053544e-07	ci right 3.614702e-06	k: 7	n:3990000
Cons ci ratio: 1.455764e-04	ci left: 9.944547e-01	ci right 9.945997e-01	k: 3968165	n:3990000
KS ci ratio: 2.263212e+00	ci left: 6.070409e-08	ci right 1.810697e-06	k: 2	n:3990000
AGT   3990000 perm   6308 sec   (633 perm/sec)   p_kst 5.012531e-07   p_cons 9.945276e-01   p_joint 1.754386e-06

Joint ci ratio: 1.385928e+00	ci left: 7.035910e-07	ci right 3.605665e-06	k: 7	n:4000000
Cons ci ratio: 1.453719e-04	ci left: 9.944565e-01	ci right 9.946013e-01	k: 3978117	n:4000000
KS ci ratio: 2.263212e+00	ci left: 6.055233e-08	ci right 1.806171e-06	k: 2	n:4000000
AGT   4000000 perm   6337 sec   (631 perm/sec)   p_kst 5.000000e-07   p_cons 9.945293e-01   p_joint 1.750000e-06

Joint ci ratio: 1.385928e+00	ci left: 7.018365e-07	ci right 3.596674e-06	k: 7	n:4010000
Cons ci ratio: 1.452347e-04	ci left: 9.944532e-01	ci right 9.945979e-01	k: 3988049	n:4010000
KS ci ratio: 2.263212e+00	ci left: 6.040132e-08	ci right 1.801667e-06	k: 2	n:4010000
AGT   4010000 perm   6367 sec   (630 perm/sec)   p_kst 4.987531e-07   p_cons 9.945259e-01   p_joint 1.745636e-06

Joint ci ratio: 1.385928e+00	ci left: 7.000906e-07	ci right 3.587727e-06	k: 7	n:4020000
Cons ci ratio: 1.450714e-04	ci left: 9.944520e-01	ci right 9.945965e-01	k: 3997989	n:4020000
KS ci ratio: 2.263212e+00	ci left: 6.025107e-08	ci right 1.797185e-06	k: 2	n:4020000
AGT   4020000 perm   6397 sec   (628 perm/sec)   p_kst 4.975124e-07   p_cons 9.945246e-01   p_joint 1.741294e-06

Joint ci ratio: 1.385928e+00	ci left: 6.983534e-07	ci right 3.578824e-06	k: 7	n:4030000
Cons ci ratio: 1.448822e-04	ci left: 9.944528e-01	ci right 9.945971e-01	k: 4007937	n:4030000
KS ci ratio: 2.263212e+00	ci left: 6.010156e-08	ci right 1.792725e-06	k: 2	n:4030000
AGT   4030000 perm   6427 sec   (627 perm/sec)   p_kst 4.962779e-07   p_cons 9.945253e-01   p_joint 1.736973e-06

Joint ci ratio: 1.385928e+00	ci left: 6.966248e-07	ci right 3.569966e-06	k: 7	n:4040000
Cons ci ratio: 1.447299e-04	ci left: 9.944508e-01	ci right 9.945950e-01	k: 4017874	n:4040000
KS ci ratio: 2.263212e+00	ci left: 5.995280e-08	ci right 1.788288e-06	k: 2	n:4040000
AGT   4040000 perm   6457 sec   (626 perm/sec)   p_kst 4.950495e-07   p_cons 9.945233e-01   p_joint 1.732673e-06

Joint ci ratio: 1.385928e+00	ci left: 6.949047e-07	ci right 3.561151e-06	k: 7	n:4050000
Cons ci ratio: 1.445879e-04	ci left: 9.944481e-01	ci right 9.945922e-01	k: 4027808	n:4050000
KS ci ratio: 2.263212e+00	ci left: 5.980477e-08	ci right 1.783872e-06	k: 2	n:4050000
AGT   4050000 perm   6488 sec   (624 perm/sec)   p_kst 4.938272e-07   p_cons 9.945205e-01   p_joint 1.728395e-06

Joint ci ratio: 1.385928e+00	ci left: 6.931931e-07	ci right 3.552380e-06	k: 7	n:4060000
Cons ci ratio: 1.444202e-04	ci left: 9.944474e-01	ci right 9.945913e-01	k: 4037750	n:4060000
KS ci ratio: 2.263212e+00	ci left: 5.965746e-08	ci right 1.779479e-06	k: 2	n:4060000
AGT   4060000 perm   6518 sec   (623 perm/sec)   p_kst 4.926108e-07   p_cons 9.945197e-01   p_joint 1.724138e-06

Joint ci ratio: 1.385928e+00	ci left: 6.914900e-07	ci right 3.543652e-06	k: 7	n:4070000
Cons ci ratio: 1.441945e-04	ci left: 9.944512e-01	ci right 9.945948e-01	k: 4047710	n:4070000
KS ci ratio: 2.263212e+00	ci left: 5.951088e-08	ci right 1.775106e-06	k: 2	n:4070000
AGT   4070000 perm   6549 sec   (622 perm/sec)   p_kst 4.914005e-07   p_cons 9.945233e-01   p_joint 1.719902e-06

Joint ci ratio: 1.385928e+00	ci left: 6.897951e-07	ci right 3.534966e-06	k: 7	n:4080000
Cons ci ratio: 1.440152e-04	ci left: 9.944514e-01	ci right 9.945949e-01	k: 4057656	n:4080000
KS ci ratio: 2.263212e+00	ci left: 5.936502e-08	ci right 1.770756e-06	k: 2	n:4080000
AGT   4080000 perm   6578 sec   (620 perm/sec)   p_kst 4.901961e-07   p_cons 9.945235e-01   p_joint 1.715686e-06

Joint ci ratio: 1.385928e+00	ci left: 6.881086e-07	ci right 3.526323e-06	k: 7	n:4090000
Cons ci ratio: 1.438559e-04	ci left: 9.944502e-01	ci right 9.945936e-01	k: 4067596	n:4090000
KS ci ratio: 2.263212e+00	ci left: 5.921988e-08	ci right 1.766426e-06	k: 2	n:4090000
AGT   4090000 perm   6608 sec   (619 perm/sec)   p_kst 4.889976e-07   p_cons 9.945222e-01   p_joint 1.711491e-06

Joint ci ratio: 1.385928e+00	ci left: 6.864303e-07	ci right 3.517723e-06	k: 7	n:4100000
Cons ci ratio: 1.437036e-04	ci left: 9.944486e-01	ci right 9.945917e-01	k: 4077534	n:4100000
KS ci ratio: 2.263212e+00	ci left: 5.907544e-08	ci right 1.762118e-06	k: 2	n:4100000
AGT   4100000 perm   6639 sec   (618 perm/sec)   p_kst 4.878049e-07   p_cons 9.945205e-01   p_joint 1.707317e-06

Joint ci ratio: 1.385928e+00	ci left: 6.847601e-07	ci right 3.509164e-06	k: 7	n:4110000
Cons ci ratio: 1.435197e-04	ci left: 9.944493e-01	ci right 9.945923e-01	k: 4087482	n:4110000
KS ci ratio: 2.263212e+00	ci left: 5.893170e-08	ci right 1.757830e-06	k: 2	n:4110000
AGT   4110000 perm   6669 sec   (616 perm/sec)   p_kst 4.866180e-07   p_cons 9.945212e-01   p_joint 1.703163e-06

Joint ci ratio: 1.385928e+00	ci left: 6.830981e-07	ci right 3.500646e-06	k: 7	n:4120000
Cons ci ratio: 1.433206e-04	ci left: 9.944513e-01	ci right 9.945941e-01	k: 4097435	n:4120000
KS ci ratio: 2.263212e+00	ci left: 5.878867e-08	ci right 1.753564e-06	k: 2	n:4120000
AGT   4120000 perm   6700 sec   (615 perm/sec)   p_kst 4.854369e-07   p_cons 9.945231e-01   p_joint 1.699029e-06

Joint ci ratio: 1.385928e+00	ci left: 6.814441e-07	ci right 3.492170e-06	k: 7	n:4130000
Cons ci ratio: 1.431413e-04	ci left: 9.944518e-01	ci right 9.945944e-01	k: 4107382	n:4130000
KS ci ratio: 2.263212e+00	ci left: 5.864632e-08	ci right 1.749318e-06	k: 2	n:4130000
AGT   4130000 perm   6731 sec   (614 perm/sec)   p_kst 4.842615e-07   p_cons 9.945235e-01   p_joint 1.694915e-06

Joint ci ratio: 1.385928e+00	ci left: 6.797981e-07	ci right 3.483735e-06	k: 7	n:4140000
Cons ci ratio: 1.430039e-04	ci left: 9.944492e-01	ci right 9.945917e-01	k: 4117316	n:4140000
KS ci ratio: 2.263212e+00	ci left: 5.850466e-08	ci right 1.745093e-06	k: 2	n:4140000
AGT   4140000 perm   6762 sec   (612 perm/sec)   p_kst 4.830918e-07   p_cons 9.945208e-01   p_joint 1.690821e-06

Joint ci ratio: 1.385928e+00	ci left: 6.781600e-07	ci right 3.475340e-06	k: 7	n:4150000
Cons ci ratio: 1.428196e-04	ci left: 9.944502e-01	ci right 9.945925e-01	k: 4127265	n:4150000
KS ci ratio: 2.263212e+00	ci left: 5.836369e-08	ci right 1.740888e-06	k: 2	n:4150000
AGT   4150000 perm   6793 sec   (611 perm/sec)   p_kst 4.819277e-07   p_cons 9.945217e-01   p_joint 1.686747e-06

Joint ci ratio: 1.385928e+00	ci left: 6.765298e-07	ci right 3.466986e-06	k: 7	n:4160000
Cons ci ratio: 1.426170e-04	ci left: 9.944527e-01	ci right 9.945947e-01	k: 4137220	n:4160000
KS ci ratio: 2.263212e+00	ci left: 5.822339e-08	ci right 1.736703e-06	k: 2	n:4160000
AGT   4160000 perm   6824 sec   (610 perm/sec)   p_kst 4.807692e-07   p_cons 9.945240e-01   p_joint 1.682692e-06

Joint ci ratio: 1.385928e+00	ci left: 6.749075e-07	ci right 3.458672e-06	k: 7	n:4170000
Cons ci ratio: 1.424560e-04	ci left: 9.944520e-01	ci right 9.945939e-01	k: 4147162	n:4170000
KS ci ratio: 2.263212e+00	ci left: 5.808377e-08	ci right 1.732538e-06	k: 2	n:4170000
AGT   4170000 perm   6855 sec   (608 perm/sec)   p_kst 4.796163e-07   p_cons 9.945233e-01   p_joint 1.678657e-06

Joint ci ratio: 1.385928e+00	ci left: 6.732929e-07	ci right 3.450398e-06	k: 7	n:4180000
Cons ci ratio: 1.422769e-04	ci left: 9.944527e-01	ci right 9.945944e-01	k: 4157110	n:4180000
KS ci ratio: 2.263212e+00	ci left: 5.794481e-08	ci right 1.728393e-06	k: 2	n:4180000
AGT   4180000 perm   6887 sec   (607 perm/sec)   p_kst 4.784689e-07   p_cons 9.945239e-01   p_joint 1.674641e-06

Joint ci ratio: 1.385928e+00	ci left: 6.716859e-07	ci right 3.442163e-06	k: 7	n:4190000
Cons ci ratio: 1.421202e-04	ci left: 9.944518e-01	ci right 9.945934e-01	k: 4167051	n:4190000
KS ci ratio: 2.263212e+00	ci left: 5.780652e-08	ci right 1.724268e-06	k: 2	n:4190000
AGT   4190000 perm   6919 sec   (606 perm/sec)   p_kst 4.773270e-07   p_cons 9.945229e-01   p_joint 1.670644e-06

Joint ci ratio: 1.385928e+00	ci left: 6.700867e-07	ci right 3.433967e-06	k: 7	n:4200000
Cons ci ratio: 1.419175e-04	ci left: 9.944544e-01	ci right 9.945958e-01	k: 4177007	n:4200000
KS ci ratio: 2.263212e+00	ci left: 5.766888e-08	ci right 1.720163e-06	k: 2	n:4200000
AGT   4200000 perm   6951 sec   (604 perm/sec)   p_kst 4.761905e-07   p_cons 9.945255e-01   p_joint 1.666667e-06

Joint ci ratio: 1.385928e+00	ci left: 6.684950e-07	ci right 3.425811e-06	k: 7	n:4210000
Cons ci ratio: 1.417311e-04	ci left: 9.944559e-01	ci right 9.945971e-01	k: 4186958	n:4210000
KS ci ratio: 2.263212e+00	ci left: 5.753190e-08	ci right 1.716077e-06	k: 2	n:4210000
AGT   4210000 perm   6983 sec   (603 perm/sec)   p_kst 4.750594e-07   p_cons 9.945268e-01   p_joint 1.662708e-06

Joint ci ratio: 1.385928e+00	ci left: 6.669109e-07	ci right 3.417693e-06	k: 7	n:4220000
Cons ci ratio: 1.415546e-04	ci left: 9.944566e-01	ci right 9.945977e-01	k: 4196906	n:4220000
KS ci ratio: 2.263212e+00	ci left: 5.739557e-08	ci right 1.712010e-06	k: 2	n:4220000
AGT   4220000 perm   7015 sec   (602 perm/sec)   p_kst 4.739336e-07   p_cons 9.945275e-01   p_joint 1.658768e-06

Joint ci ratio: 1.385928e+00	ci left: 6.653343e-07	ci right 3.409613e-06	k: 7	n:4230000
Cons ci ratio: 1.413573e-04	ci left: 9.944590e-01	ci right 9.945999e-01	k: 4206861	n:4230000
KS ci ratio: 2.263212e+00	ci left: 5.725988e-08	ci right 1.707963e-06	k: 2	n:4230000
AGT   4230000 perm   7046 sec   (600 perm/sec)   p_kst 4.728132e-07   p_cons 9.945298e-01   p_joint 1.654846e-06

Joint ci ratio: 1.385928e+00	ci left: 6.637651e-07	ci right 3.401571e-06	k: 7	n:4240000
Cons ci ratio: 1.411914e-04	ci left: 9.944591e-01	ci right 9.945997e-01	k: 4216806	n:4240000
KS ci ratio: 2.263212e+00	ci left: 5.712483e-08	ci right 1.703935e-06	k: 2	n:4240000
AGT   4240000 perm   7078 sec   (599 perm/sec)   p_kst 4.716981e-07   p_cons 9.945297e-01   p_joint 1.650943e-06

Joint ci ratio: 1.385928e+00	ci left: 6.622033e-07	ci right 3.393568e-06	k: 7	n:4250000
Cons ci ratio: 1.410139e-04	ci left: 9.944600e-01	ci right 9.946005e-01	k: 4226755	n:4250000
KS ci ratio: 2.263212e+00	ci left: 5.699042e-08	ci right 1.699925e-06	k: 2	n:4250000
AGT   4250000 perm   7110 sec   (598 perm/sec)   p_kst 4.705882e-07   p_cons 9.945306e-01   p_joint 1.647059e-06

Joint ci ratio: 1.385928e+00	ci left: 6.606489e-07	ci right 3.385602e-06	k: 7	n:4260000
Cons ci ratio: 1.408948e-04	ci left: 9.944565e-01	ci right 9.945968e-01	k: 4236685	n:4260000
KS ci ratio: 2.263212e+00	ci left: 5.685664e-08	ci right 1.695935e-06	k: 2	n:4260000
AGT   4260000 perm   7142 sec   (596 perm/sec)   p_kst 4.694836e-07   p_cons 9.945270e-01   p_joint 1.643192e-06

Joint ci ratio: 1.385928e+00	ci left: 6.591017e-07	ci right 3.377673e-06	k: 7	n:4270000
Cons ci ratio: 1.407305e-04	ci left: 9.944565e-01	ci right 9.945967e-01	k: 4246630	n:4270000
KS ci ratio: 2.263212e+00	ci left: 5.672349e-08	ci right 1.691963e-06	k: 2	n:4270000
AGT   4270000 perm   7174 sec   (595 perm/sec)   p_kst 4.683841e-07   p_cons 9.945269e-01   p_joint 1.639344e-06

Joint ci ratio: 1.385928e+00	ci left: 6.575617e-07	ci right 3.369781e-06	k: 7	n:4280000
Cons ci ratio: 1.406332e-04	ci left: 9.944513e-01	ci right 9.945914e-01	k: 4256553	n:4280000
KS ci ratio: 2.263212e+00	ci left: 5.659096e-08	ci right 1.688010e-06	k: 2	n:4280000
AGT   4280000 perm   7205 sec   (594 perm/sec)   p_kst 4.672897e-07   p_cons 9.945217e-01   p_joint 1.635514e-06

Joint ci ratio: 1.385928e+00	ci left: 6.560289e-07	ci right 3.361926e-06	k: 7	n:4290000
Cons ci ratio: 1.404969e-04	ci left: 9.944493e-01	ci right 9.945892e-01	k: 4266489	n:4290000
KS ci ratio: 2.263212e+00	ci left: 5.645904e-08	ci right 1.684075e-06	k: 2	n:4290000
AGT   4290000 perm   7237 sec   (593 perm/sec)   p_kst 4.662005e-07   p_cons 9.945196e-01   p_joint 1.631702e-06

Joint ci ratio: 1.385928e+00	ci left: 6.545033e-07	ci right 3.354108e-06	k: 7	n:4300000
Cons ci ratio: 1.403460e-04	ci left: 9.944484e-01	ci right 9.945882e-01	k: 4276430	n:4300000
KS ci ratio: 2.263212e+00	ci left: 5.632774e-08	ci right 1.680159e-06	k: 2	n:4300000
AGT   4300000 perm   7269 sec   (592 perm/sec)   p_kst 4.651163e-07   p_cons 9.945186e-01   p_joint 1.627907e-06

Joint ci ratio: 1.385928e+00	ci left: 6.529847e-07	ci right 3.346326e-06	k: 7	n:4310000
Cons ci ratio: 1.401926e-04	ci left: 9.944477e-01	ci right 9.945874e-01	k: 4286372	n:4310000
KS ci ratio: 2.263212e+00	ci left: 5.619705e-08	ci right 1.676261e-06	k: 2	n:4310000
AGT   4310000 perm   7301 sec   (590 perm/sec)   p_kst 4.640371e-07   p_cons 9.945179e-01   p_joint 1.624130e-06

Joint ci ratio: 1.385928e+00	ci left: 6.514732e-07	ci right 3.338579e-06	k: 7	n:4320000
Cons ci ratio: 1.400515e-04	ci left: 9.944461e-01	ci right 9.945856e-01	k: 4296310	n:4320000
KS ci ratio: 2.263212e+00	ci left: 5.606697e-08	ci right 1.672380e-06	k: 2	n:4320000
AGT   4320000 perm   7333 sec   (589 perm/sec)   p_kst 4.629630e-07   p_cons 9.945162e-01   p_joint 1.620370e-06

Joint ci ratio: 1.385928e+00	ci left: 6.499686e-07	ci right 3.330869e-06	k: 7	n:4330000
Cons ci ratio: 1.299001e-04	ci left: 9.952028e-01	ci right 9.953323e-01	k: 4309510	n:4330000
KS ci ratio: 2.263212e+00	ci left: 5.593748e-08	ci right 1.668518e-06	k: 2	n:4330000
AGT   4330000 perm   7365 sec   (588 perm/sec)   p_kst 4.618938e-07   p_cons 9.952679e-01   p_joint 1.616628e-06

Joint ci ratio: 1.385928e+00	ci left: 6.484710e-07	ci right 3.323194e-06	k: 7	n:4340000
Cons ci ratio: 1.297684e-04	ci left: 9.952016e-01	ci right 9.953309e-01	k: 4319457	n:4340000
KS ci ratio: 2.263212e+00	ci left: 5.580859e-08	ci right 1.664674e-06	k: 2	n:4340000
AGT   4340000 perm   7397 sec   (587 perm/sec)   p_kst 4.608295e-07   p_cons 9.952666e-01   p_joint 1.612903e-06

Joint ci ratio: 1.385928e+00	ci left: 6.469802e-07	ci right 3.315555e-06	k: 7	n:4350000
Cons ci ratio: 1.296434e-04	ci left: 9.951999e-01	ci right 9.953291e-01	k: 4329402	n:4350000
KS ci ratio: 2.263212e+00	ci left: 5.568030e-08	ci right 1.660847e-06	k: 2	n:4350000
AGT   4350000 perm   7430 sec   (585 perm/sec)   p_kst 4.597701e-07   p_cons 9.952648e-01   p_joint 1.609195e-06

Joint ci ratio: 1.306665e+00	ci left: 7.921637e-07	ci right 3.615407e-06	k: 8	n:4360000
Cons ci ratio: 1.295093e-04	ci left: 9.951989e-01	ci right 9.953280e-01	k: 4339350	n:4360000
KS ci ratio: 1.959999e+00	ci left: 1.418973e-07	ci right 2.010841e-06	k: 3	n:4360000
AGT   4360000 perm   7463 sec   (584 perm/sec)   p_kst 6.880734e-07   p_cons 9.952638e-01   p_joint 1.834862e-06

Joint ci ratio: 1.306665e+00	ci left: 7.903509e-07	ci right 3.607134e-06	k: 8	n:4370000
Cons ci ratio: 1.293567e-04	ci left: 9.951993e-01	ci right 9.953282e-01	k: 4349304	n:4370000
KS ci ratio: 1.959999e+00	ci left: 1.415726e-07	ci right 2.006240e-06	k: 3	n:4370000
AGT   4370000 perm   7495 sec   (583 perm/sec)   p_kst 6.864989e-07   p_cons 9.952641e-01   p_joint 1.830664e-06

Joint ci ratio: 1.306665e+00	ci left: 7.885465e-07	ci right 3.598898e-06	k: 8	n:4380000
Cons ci ratio: 1.292485e-04	ci left: 9.951964e-01	ci right 9.953253e-01	k: 4359244	n:4380000
KS ci ratio: 1.959999e+00	ci left: 1.412494e-07	ci right 2.001659e-06	k: 3	n:4380000
AGT   4380000 perm   7528 sec   (582 perm/sec)   p_kst 6.849315e-07   p_cons 9.952612e-01   p_joint 1.826484e-06

Joint ci ratio: 1.306665e+00	ci left: 7.867502e-07	ci right 3.590701e-06	k: 8	n:4390000
Cons ci ratio: 1.291000e-04	ci left: 9.951966e-01	ci right 9.953253e-01	k: 4369197	n:4390000
KS ci ratio: 1.959999e+00	ci left: 1.409276e-07	ci right 1.997100e-06	k: 3	n:4390000
AGT   4390000 perm   7561 sec   (581 perm/sec)   p_kst 6.833713e-07   p_cons 9.952613e-01   p_joint 1.822323e-06

Joint ci ratio: 1.306665e+00	ci left: 7.849622e-07	ci right 3.582540e-06	k: 8	n:4400000
Cons ci ratio: 1.289520e-04	ci left: 9.951968e-01	ci right 9.953253e-01	k: 4379150	n:4400000
KS ci ratio: 1.959999e+00	ci left: 1.406073e-07	ci right 1.992561e-06	k: 3	n:4400000
AGT   4400000 perm   7595 sec   (579 perm/sec)   p_kst 6.818182e-07   p_cons 9.952614e-01   p_joint 1.818182e-06

Joint ci ratio: 1.306665e+00	ci left: 7.831822e-07	ci right 3.574416e-06	k: 8	n:4410000
Cons ci ratio: 1.287983e-04	ci left: 9.951974e-01	ci right 9.953258e-01	k: 4389105	n:4410000
KS ci ratio: 1.959999e+00	ci left: 1.402885e-07	ci right 1.988042e-06	k: 3	n:4410000
AGT   4410000 perm   7627 sec   (578 perm/sec)   p_kst 6.802721e-07   p_cons 9.952619e-01   p_joint 1.814059e-06

Joint ci ratio: 1.306665e+00	ci left: 7.814103e-07	ci right 3.566329e-06	k: 8	n:4420000
Cons ci ratio: 1.286421e-04	ci left: 9.951982e-01	ci right 9.953265e-01	k: 4399061	n:4420000
KS ci ratio: 1.959999e+00	ci left: 1.399711e-07	ci right 1.983545e-06	k: 3	n:4420000
AGT   4420000 perm   7661 sec   (577 perm/sec)   p_kst 6.787330e-07   p_cons 9.952627e-01   p_joint 1.809955e-06

Joint ci ratio: 1.306665e+00	ci left: 7.796464e-07	ci right 3.558279e-06	k: 8	n:4430000
Cons ci ratio: 1.284526e-04	ci left: 9.952016e-01	ci right 9.953296e-01	k: 4409028	n:4430000
KS ci ratio: 1.959999e+00	ci left: 1.396551e-07	ci right 1.979067e-06	k: 3	n:4430000
AGT   4430000 perm   7694 sec   (576 perm/sec)   p_kst 6.772009e-07   p_cons 9.952659e-01   p_joint 1.805869e-06

Joint ci ratio: 1.306665e+00	ci left: 7.778904e-07	ci right 3.550265e-06	k: 8	n:4440000
Cons ci ratio: 1.283068e-04	ci left: 9.952017e-01	ci right 9.953296e-01	k: 4418981	n:4440000
KS ci ratio: 1.959999e+00	ci left: 1.393406e-07	ci right 1.974610e-06	k: 3	n:4440000
AGT   4440000 perm   7727 sec   (575 perm/sec)   p_kst 6.756757e-07   p_cons 9.952660e-01   p_joint 1.801802e-06

Joint ci ratio: 1.306665e+00	ci left: 7.761424e-07	ci right 3.542287e-06	k: 8	n:4450000
Cons ci ratio: 1.281187e-04	ci left: 9.952050e-01	ci right 9.953328e-01	k: 4428948	n:4450000
KS ci ratio: 1.959999e+00	ci left: 1.390275e-07	ci right 1.970172e-06	k: 3	n:4450000
AGT   4450000 perm   7761 sec   (573 perm/sec)   p_kst 6.741573e-07   p_cons 9.952692e-01   p_joint 1.797753e-06

Joint ci ratio: 1.306665e+00	ci left: 7.744021e-07	ci right 3.534344e-06	k: 8	n:4460000
Cons ci ratio: 1.279832e-04	ci left: 9.952045e-01	ci right 9.953321e-01	k: 4438898	n:4460000
KS ci ratio: 1.959999e+00	ci left: 1.387157e-07	ci right 1.965755e-06	k: 3	n:4460000
AGT   4460000 perm   7794 sec   (572 perm/sec)   p_kst 6.726457e-07   p_cons 9.952686e-01   p_joint 1.793722e-06

Joint ci ratio: 1.306665e+00	ci left: 7.726697e-07	ci right 3.526437e-06	k: 8	n:4470000
Cons ci ratio: 1.278238e-04	ci left: 9.952058e-01	ci right 9.953332e-01	k: 4448856	n:4470000
KS ci ratio: 1.959999e+00	ci left: 1.384054e-07	ci right 1.961357e-06	k: 3	n:4470000
AGT   4470000 perm   7828 sec   (571 perm/sec)   p_kst 6.711409e-07   p_cons 9.952698e-01   p_joint 1.789709e-06

Joint ci ratio: 1.306665e+00	ci left: 7.709450e-07	ci right 3.518566e-06	k: 8	n:4480000
Cons ci ratio: 1.276832e-04	ci left: 9.952057e-01	ci right 9.953330e-01	k: 4458808	n:4480000
KS ci ratio: 1.959999e+00	ci left: 1.380965e-07	ci right 1.956979e-06	k: 3	n:4480000
AGT   4480000 perm   7860 sec   (570 perm/sec)   p_kst 6.696429e-07   p_cons 9.952696e-01   p_joint 1.785714e-06

Joint ci ratio: 1.306665e+00	ci left: 7.692280e-07	ci right 3.510730e-06	k: 8	n:4490000
Cons ci ratio: 1.275159e-04	ci left: 9.952076e-01	ci right 9.953347e-01	k: 4468769	n:4490000
KS ci ratio: 1.959999e+00	ci left: 1.377889e-07	ci right 1.952621e-06	k: 3	n:4490000
AGT   4490000 perm   7894 sec   (569 perm/sec)   p_kst 6.681514e-07   p_cons 9.952715e-01   p_joint 1.781737e-06

Joint ci ratio: 1.306665e+00	ci left: 7.675186e-07	ci right 3.502928e-06	k: 8	n:4500000
Cons ci ratio: 1.273702e-04	ci left: 9.952080e-01	ci right 9.953350e-01	k: 4478723	n:4500000
KS ci ratio: 1.959999e+00	ci left: 1.374827e-07	ci right 1.948282e-06	k: 3	n:4500000
AGT   4500000 perm   7927 sec   (568 perm/sec)   p_kst 6.666667e-07   p_cons 9.952718e-01   p_joint 1.777778e-06

Joint ci ratio: 1.306665e+00	ci left: 7.658167e-07	ci right 3.495161e-06	k: 8	n:4510000
Cons ci ratio: 1.272161e-04	ci left: 9.952090e-01	ci right 9.953358e-01	k: 4488680	n:4510000
KS ci ratio: 1.959999e+00	ci left: 1.371779e-07	ci right 1.943962e-06	k: 3	n:4510000
AGT   4510000 perm   7961 sec   (566 perm/sec)   p_kst 6.651885e-07   p_cons 9.952727e-01   p_joint 1.773836e-06

Joint ci ratio: 1.306665e+00	ci left: 7.641225e-07	ci right 3.487428e-06	k: 8	n:4520000
Cons ci ratio: 1.270894e-04	ci left: 9.952080e-01	ci right 9.953347e-01	k: 4498628	n:4520000
KS ci ratio: 1.959999e+00	ci left: 1.368744e-07	ci right 1.939661e-06	k: 3	n:4520000
AGT   4520000 perm   7995 sec   (565 perm/sec)   p_kst 6.637168e-07   p_cons 9.952717e-01   p_joint 1.769912e-06

Joint ci ratio: 1.306665e+00	ci left: 7.624357e-07	ci right 3.479730e-06	k: 8	n:4530000
Cons ci ratio: 1.269512e-04	ci left: 9.952079e-01	ci right 9.953345e-01	k: 4508580	n:4530000
KS ci ratio: 1.959999e+00	ci left: 1.365722e-07	ci right 1.935379e-06	k: 3	n:4530000
AGT   4530000 perm   8029 sec   (564 perm/sec)   p_kst 6.622517e-07   p_cons 9.952715e-01   p_joint 1.766004e-06

Joint ci ratio: 1.306665e+00	ci left: 7.607563e-07	ci right 3.472065e-06	k: 8	n:4540000
Cons ci ratio: 1.268075e-04	ci left: 9.952083e-01	ci right 9.953347e-01	k: 4518534	n:4540000
KS ci ratio: 1.959999e+00	ci left: 1.362714e-07	ci right 1.931116e-06	k: 3	n:4540000
AGT   4540000 perm   8063 sec   (563 perm/sec)   p_kst 6.607930e-07   p_cons 9.952718e-01   p_joint 1.762115e-06

Joint ci ratio: 1.306665e+00	ci left: 7.590843e-07	ci right 3.464434e-06	k: 8	n:4550000
Cons ci ratio: 1.266642e-04	ci left: 9.952086e-01	ci right 9.953349e-01	k: 4528488	n:4550000
KS ci ratio: 1.959999e+00	ci left: 1.359719e-07	ci right 1.926872e-06	k: 3	n:4550000
AGT   4550000 perm   8098 sec   (562 perm/sec)   p_kst 6.593407e-07   p_cons 9.952721e-01   p_joint 1.758242e-06

Joint ci ratio: 1.306665e+00	ci left: 7.574196e-07	ci right 3.456837e-06	k: 8	n:4560000
Cons ci ratio: 1.265009e-04	ci left: 9.952105e-01	ci right 9.953366e-01	k: 4538449	n:4560000
KS ci ratio: 1.959999e+00	ci left: 1.356737e-07	ci right 1.922646e-06	k: 3	n:4560000
AGT   4560000 perm   8131 sec   (561 perm/sec)   p_kst 6.578947e-07   p_cons 9.952739e-01   p_joint 1.754386e-06

Joint ci ratio: 1.306665e+00	ci left: 7.557623e-07	ci right 3.449273e-06	k: 8	n:4570000
Cons ci ratio: 1.263410e-04	ci left: 9.952122e-01	ci right 9.953382e-01	k: 4548409	n:4570000
KS ci ratio: 1.959999e+00	ci left: 1.353769e-07	ci right 1.918439e-06	k: 3	n:4570000
AGT   4570000 perm   8166 sec   (560 perm/sec)   p_kst 6.564551e-07   p_cons 9.952755e-01   p_joint 1.750547e-06

Joint ci ratio: 1.306665e+00	ci left: 7.541121e-07	ci right 3.441741e-06	k: 8	n:4580000
Cons ci ratio: 1.261730e-04	ci left: 9.952145e-01	ci right 9.953403e-01	k: 4558372	n:4580000
KS ci ratio: 1.959999e+00	ci left: 1.350813e-07	ci right 1.914251e-06	k: 3	n:4580000
AGT   4580000 perm   8200 sec   (559 perm/sec)   p_kst 6.550218e-07   p_cons 9.952777e-01   p_joint 1.746725e-06

Joint ci ratio: 1.306665e+00	ci left: 7.524692e-07	ci right 3.434243e-06	k: 8	n:4590000
Cons ci ratio: 1.260407e-04	ci left: 9.952142e-01	ci right 9.953399e-01	k: 4568323	n:4590000
KS ci ratio: 1.959999e+00	ci left: 1.347870e-07	ci right 1.910080e-06	k: 3	n:4590000
AGT   4590000 perm   8234 sec   (557 perm/sec)   p_kst 6.535948e-07   p_cons 9.952773e-01   p_joint 1.742919e-06

Joint ci ratio: 1.306665e+00	ci left: 7.508334e-07	ci right 3.426777e-06	k: 8	n:4600000
Cons ci ratio: 1.259670e-04	ci left: 9.952095e-01	ci right 9.953351e-01	k: 4578254	n:4600000
KS ci ratio: 1.959999e+00	ci left: 1.344940e-07	ci right 1.905928e-06	k: 3	n:4600000
AGT   4600000 perm   8267 sec   (556 perm/sec)   p_kst 6.521739e-07   p_cons 9.952726e-01   p_joint 1.739130e-06

Joint ci ratio: 1.306665e+00	ci left: 7.492047e-07	ci right 3.419344e-06	k: 8	n:4610000
Cons ci ratio: 1.258411e-04	ci left: 9.952088e-01	ci right 9.953342e-01	k: 4588203	n:4610000
KS ci ratio: 1.959999e+00	ci left: 1.342022e-07	ci right 1.901793e-06	k: 3	n:4610000
AGT   4610000 perm   8301 sec   (555 perm/sec)   p_kst 6.507592e-07   p_cons 9.952718e-01   p_joint 1.735358e-06

Joint ci ratio: 1.306665e+00	ci left: 7.475830e-07	ci right 3.411943e-06	k: 8	n:4620000
Cons ci ratio: 1.257127e-04	ci left: 9.952082e-01	ci right 9.953336e-01	k: 4598153	n:4620000
KS ci ratio: 1.959999e+00	ci left: 1.339117e-07	ci right 1.897677e-06	k: 3	n:4620000
AGT   4620000 perm   8335 sec   (554 perm/sec)   p_kst 6.493506e-07   p_cons 9.952712e-01   p_joint 1.731602e-06

Joint ci ratio: 1.306665e+00	ci left: 7.459684e-07	ci right 3.404574e-06	k: 8	n:4630000
Cons ci ratio: 1.255674e-04	ci left: 9.952090e-01	ci right 9.953342e-01	k: 4608109	n:4630000
KS ci ratio: 1.959999e+00	ci left: 1.336225e-07	ci right 1.893578e-06	k: 3	n:4630000
AGT   4630000 perm   8369 sec   (553 perm/sec)   p_kst 6.479482e-07   p_cons 9.952719e-01   p_joint 1.727862e-06

Joint ci ratio: 1.306665e+00	ci left: 7.443607e-07	ci right 3.397236e-06	k: 8	n:4640000
Cons ci ratio: 1.254024e-04	ci left: 9.952113e-01	ci right 9.953363e-01	k: 4618072	n:4640000
KS ci ratio: 1.959999e+00	ci left: 1.333345e-07	ci right 1.889497e-06	k: 3	n:4640000
AGT   4640000 perm   8404 sec   (552 perm/sec)   p_kst 6.465517e-07   p_cons 9.952741e-01   p_joint 1.724138e-06

Joint ci ratio: 1.306665e+00	ci left: 7.427599e-07	ci right 3.389930e-06	k: 8	n:4650000
Cons ci ratio: 1.252525e-04	ci left: 9.952125e-01	ci right 9.953374e-01	k: 4628030	n:4650000
KS ci ratio: 1.959999e+00	ci left: 1.330478e-07	ci right 1.885434e-06	k: 3	n:4650000
AGT   4650000 perm   8438 sec   (551 perm/sec)   p_kst 6.451613e-07   p_cons 9.952753e-01   p_joint 1.720430e-06

Joint ci ratio: 1.306665e+00	ci left: 7.411660e-07	ci right 3.382656e-06	k: 8	n:4660000
Cons ci ratio: 1.251344e-04	ci left: 9.952113e-01	ci right 9.953361e-01	k: 4637977	n:4660000
KS ci ratio: 1.959999e+00	ci left: 1.327623e-07	ci right 1.881388e-06	k: 3	n:4660000
AGT   4660000 perm   8473 sec   (550 perm/sec)   p_kst 6.437768e-07   p_cons 9.952740e-01   p_joint 1.716738e-06

Joint ci ratio: 1.306665e+00	ci left: 7.395789e-07	ci right 3.375412e-06	k: 8	n:4670000
Cons ci ratio: 1.249911e-04	ci left: 9.952121e-01	ci right 9.953367e-01	k: 4647933	n:4670000
KS ci ratio: 1.959999e+00	ci left: 1.324780e-07	ci right 1.877359e-06	k: 3	n:4670000
AGT   4670000 perm   8509 sec   (549 perm/sec)   p_kst 6.423983e-07   p_cons 9.952747e-01   p_joint 1.713062e-06

Joint ci ratio: 1.306665e+00	ci left: 7.379986e-07	ci right 3.368200e-06	k: 8	n:4680000
Cons ci ratio: 1.248397e-04	ci left: 9.952135e-01	ci right 9.953380e-01	k: 4657892	n:4680000
KS ci ratio: 1.959999e+00	ci left: 1.321949e-07	ci right 1.873348e-06	k: 3	n:4680000
AGT   4680000 perm   8543 sec   (548 perm/sec)   p_kst 6.410256e-07   p_cons 9.952761e-01   p_joint 1.709402e-06

Joint ci ratio: 1.306665e+00	ci left: 7.364250e-07	ci right 3.361018e-06	k: 8	n:4690000
Cons ci ratio: 1.246804e-04	ci left: 9.952156e-01	ci right 9.953399e-01	k: 4667854	n:4690000
KS ci ratio: 1.959999e+00	ci left: 1.319131e-07	ci right 1.869353e-06	k: 3	n:4690000
AGT   4690000 perm   8579 sec   (547 perm/sec)   p_kst 6.396588e-07   p_cons 9.952780e-01   p_joint 1.705757e-06

Joint ci ratio: 1.306665e+00	ci left: 7.348582e-07	ci right 3.353867e-06	k: 8	n:4700000
Cons ci ratio: 1.245584e-04	ci left: 9.952148e-01	ci right 9.953390e-01	k: 4677803	n:4700000
KS ci ratio: 1.959999e+00	ci left: 1.316324e-07	ci right 1.865376e-06	k: 3	n:4700000
AGT   4700000 perm   8614 sec   (546 perm/sec)   p_kst 6.382979e-07   p_cons 9.952772e-01   p_joint 1.702128e-06

Joint ci ratio: 1.306665e+00	ci left: 7.332980e-07	ci right 3.346747e-06	k: 8	n:4710000
Cons ci ratio: 1.244282e-04	ci left: 9.952147e-01	ci right 9.953388e-01	k: 4687755	n:4710000
KS ci ratio: 1.959999e+00	ci left: 1.313529e-07	ci right 1.861416e-06	k: 3	n:4710000
AGT   4710000 perm   8648 sec   (545 perm/sec)   p_kst 6.369427e-07   p_cons 9.952771e-01   p_joint 1.698514e-06

Joint ci ratio: 1.306665e+00	ci left: 7.317444e-07	ci right 3.339656e-06	k: 8	n:4720000
Cons ci ratio: 1.243041e-04	ci left: 9.952142e-01	ci right 9.953381e-01	k: 4697705	n:4720000
KS ci ratio: 1.959999e+00	ci left: 1.310746e-07	ci right 1.857472e-06	k: 3	n:4720000
AGT   4720000 perm   8683 sec   (544 perm/sec)   p_kst 6.355932e-07   p_cons 9.952765e-01   p_joint 1.694915e-06

Joint ci ratio: 1.306665e+00	ci left: 7.301973e-07	ci right 3.332595e-06	k: 8	n:4730000
Cons ci ratio: 1.241385e-04	ci left: 9.952169e-01	ci right 9.953406e-01	k: 4707670	n:4730000
KS ci ratio: 1.959999e+00	ci left: 1.307975e-07	ci right 1.853545e-06	k: 3	n:4730000
AGT   4730000 perm   8718 sec   (543 perm/sec)   p_kst 6.342495e-07   p_cons 9.952791e-01   p_joint 1.691332e-06

Joint ci ratio: 1.306665e+00	ci left: 7.286569e-07	ci right 3.325565e-06	k: 8	n:4740000
Cons ci ratio: 1.239707e-04	ci left: 9.952198e-01	ci right 9.953433e-01	k: 4717636	n:4740000
KS ci ratio: 1.959999e+00	ci left: 1.305216e-07	ci right 1.849635e-06	k: 3	n:4740000
AGT   4740000 perm   8753 sec   (542 perm/sec)   p_kst 6.329114e-07   p_cons 9.952819e-01   p_joint 1.687764e-06

Joint ci ratio: 1.306665e+00	ci left: 7.271228e-07	ci right 3.318563e-06	k: 8	n:4750000
Cons ci ratio: 1.238507e-04	ci left: 9.952190e-01	ci right 9.953425e-01	k: 4727585	n:4750000
KS ci ratio: 1.959999e+00	ci left: 1.302468e-07	ci right 1.845741e-06	k: 3	n:4750000
AGT   4750000 perm   8788 sec   (540 perm/sec)   p_kst 6.315789e-07   p_cons 9.952811e-01   p_joint 1.684211e-06

Joint ci ratio: 1.306665e+00	ci left: 7.255953e-07	ci right 3.311592e-06	k: 8	n:4760000
Cons ci ratio: 1.237366e-04	ci left: 9.952179e-01	ci right 9.953412e-01	k: 4737532	n:4760000
KS ci ratio: 1.959999e+00	ci left: 1.299732e-07	ci right 1.841863e-06	k: 3	n:4760000
AGT   4760000 perm   8824 sec   (539 perm/sec)   p_kst 6.302521e-07   p_cons 9.952798e-01   p_joint 1.680672e-06

Joint ci ratio: 1.306665e+00	ci left: 7.240741e-07	ci right 3.304649e-06	k: 8	n:4770000
Cons ci ratio: 1.236008e-04	ci left: 9.952184e-01	ci right 9.953416e-01	k: 4747487	n:4770000
KS ci ratio: 1.959999e+00	ci left: 1.297007e-07	ci right 1.838002e-06	k: 3	n:4770000
AGT   4770000 perm   8859 sec   (538 perm/sec)   p_kst 6.289308e-07   p_cons 9.952803e-01   p_joint 1.677149e-06

Joint ci ratio: 1.306665e+00	ci left: 7.225593e-07	ci right 3.297736e-06	k: 8	n:4780000
Cons ci ratio: 1.234709e-04	ci left: 9.952185e-01	ci right 9.953416e-01	k: 4757440	n:4780000
KS ci ratio: 1.959999e+00	ci left: 1.294293e-07	ci right 1.834156e-06	k: 3	n:4780000
AGT   4780000 perm   8893 sec   (537 perm/sec)   p_kst 6.276151e-07   p_cons 9.952803e-01   p_joint 1.673640e-06

Joint ci ratio: 1.306665e+00	ci left: 7.210508e-07	ci right 3.290851e-06	k: 8	n:4790000
Cons ci ratio: 1.233441e-04	ci left: 9.952184e-01	ci right 9.953414e-01	k: 4767392	n:4790000
KS ci ratio: 1.959999e+00	ci left: 1.291591e-07	ci right 1.830327e-06	k: 3	n:4790000
AGT   4790000 perm   8928 sec   (537 perm/sec)   p_kst 6.263048e-07   p_cons 9.952802e-01   p_joint 1.670146e-06

Joint ci ratio: 1.306665e+00	ci left: 7.195486e-07	ci right 3.283995e-06	k: 8	n:4800000
Cons ci ratio: 1.232095e-04	ci left: 9.952189e-01	ci right 9.953417e-01	k: 4777347	n:4800000
KS ci ratio: 1.959999e+00	ci left: 1.288900e-07	ci right 1.826514e-06	k: 3	n:4800000
AGT   4800000 perm   8964 sec   (535 perm/sec)   p_kst 6.250000e-07   p_cons 9.952806e-01   p_joint 1.666667e-06

Joint ci ratio: 1.306665e+00	ci left: 7.180527e-07	ci right 3.277168e-06	k: 8	n:4810000
Cons ci ratio: 1.230836e-04	ci left: 9.952188e-01	ci right 9.953415e-01	k: 4787299	n:4810000
KS ci ratio: 1.959999e+00	ci left: 1.286221e-07	ci right 1.822717e-06	k: 3	n:4810000
AGT   4810000 perm   9000 sec   (534 perm/sec)   p_kst 6.237006e-07   p_cons 9.952805e-01   p_joint 1.663202e-06

Joint ci ratio: 1.306665e+00	ci left: 7.165630e-07	ci right 3.270369e-06	k: 8	n:4820000
Cons ci ratio: 1.229472e-04	ci left: 9.952195e-01	ci right 9.953421e-01	k: 4797255	n:4820000
KS ci ratio: 1.959999e+00	ci left: 1.283552e-07	ci right 1.818935e-06	k: 3	n:4820000
AGT   4820000 perm   9036 sec   (533 perm/sec)   p_kst 6.224066e-07   p_cons 9.952811e-01   p_joint 1.659751e-06

Joint ci ratio: 1.306665e+00	ci left: 7.150794e-07	ci right 3.263598e-06	k: 8	n:4830000
Cons ci ratio: 1.228003e-04	ci left: 9.952211e-01	ci right 9.953435e-01	k: 4807215	n:4830000
KS ci ratio: 1.959999e+00	ci left: 1.280895e-07	ci right 1.815169e-06	k: 3	n:4830000
AGT   4830000 perm   9072 sec   (532 perm/sec)   p_kst 6.211180e-07   p_cons 9.952826e-01   p_joint 1.656315e-06

Joint ci ratio: 1.306665e+00	ci left: 7.136020e-07	ci right 3.256855e-06	k: 8	n:4840000
Cons ci ratio: 1.227026e-04	ci left: 9.952189e-01	ci right 9.953412e-01	k: 4817157	n:4840000
KS ci ratio: 1.959999e+00	ci left: 1.278248e-07	ci right 1.811419e-06	k: 3	n:4840000
AGT   4840000 perm   9109 sec   (531 perm/sec)   p_kst 6.198347e-07   p_cons 9.952804e-01   p_joint 1.652893e-06

Joint ci ratio: 1.239611e+00	ci left: 8.485309e-07	ci right 3.522637e-06	k: 9	n:4850000
Cons ci ratio: 1.226239e-04	ci left: 9.952153e-01	ci right 9.953375e-01	k: 4827092	n:4850000
KS ci ratio: 1.959999e+00	ci left: 1.275613e-07	ci right 1.807684e-06	k: 3	n:4850000
AGT   4850000 perm   9145 sec   (530 perm/sec)   p_kst 6.185567e-07   p_cons 9.952767e-01   p_joint 1.855670e-06

Joint ci ratio: 1.239611e+00	ci left: 8.467849e-07	ci right 3.515389e-06	k: 9	n:4860000
Cons ci ratio: 1.224676e-04	ci left: 9.952177e-01	ci right 9.953398e-01	k: 4837056	n:4860000
KS ci ratio: 1.959999e+00	ci left: 1.272988e-07	ci right 1.803965e-06	k: 3	n:4860000
AGT   4860000 perm   9181 sec   (529 perm/sec)   p_kst 6.172840e-07   p_cons 9.952790e-01   p_joint 1.851852e-06

Joint ci ratio: 1.239611e+00	ci left: 8.450461e-07	ci right 3.508170e-06	k: 9	n:4870000
Cons ci ratio: 1.223626e-04	ci left: 9.952161e-01	ci right 9.953381e-01	k: 4847001	n:4870000
KS ci ratio: 1.959999e+00	ci left: 1.270374e-07	ci right 1.800260e-06	k: 3	n:4870000
AGT   4870000 perm   9217 sec   (528 perm/sec)   p_kst 6.160164e-07   p_cons 9.952774e-01   p_joint 1.848049e-06

Joint ci ratio: 1.239611e+00	ci left: 8.433145e-07	ci right 3.500981e-06	k: 9	n:4880000
Cons ci ratio: 1.222446e-04	ci left: 9.952156e-01	ci right 9.953375e-01	k: 4856951	n:4880000
KS ci ratio: 1.959999e+00	ci left: 1.267771e-07	ci right 1.796571e-06	k: 3	n:4880000
AGT   4880000 perm   9253 sec   (527 perm/sec)   p_kst 6.147541e-07   p_cons 9.952768e-01   p_joint 1.844262e-06

Joint ci ratio: 1.239611e+00	ci left: 8.415899e-07	ci right 3.493822e-06	k: 9	n:4890000
Cons ci ratio: 1.220950e-04	ci left: 9.952176e-01	ci right 9.953393e-01	k: 4866913	n:4890000
KS ci ratio: 1.959999e+00	ci left: 1.265178e-07	ci right 1.792897e-06	k: 3	n:4890000
AGT   4890000 perm   9289 sec   (526 perm/sec)   p_kst 6.134969e-07   p_cons 9.952787e-01   p_joint 1.840491e-06

Joint ci ratio: 1.239611e+00	ci left: 8.398724e-07	ci right 3.486692e-06	k: 9	n:4900000
Cons ci ratio: 1.219671e-04	ci left: 9.952179e-01	ci right 9.953395e-01	k: 4876867	n:4900000
KS ci ratio: 1.959999e+00	ci left: 1.262596e-07	ci right 1.789238e-06	k: 3	n:4900000
AGT   4900000 perm   9327 sec   (525 perm/sec)   p_kst 6.122449e-07   p_cons 9.952790e-01   p_joint 1.836735e-06

Joint ci ratio: 1.239611e+00	ci left: 8.381619e-07	ci right 3.479591e-06	k: 9	n:4910000
Cons ci ratio: 1.218080e-04	ci left: 9.952207e-01	ci right 9.953421e-01	k: 4886833	n:4910000
KS ci ratio: 1.959999e+00	ci left: 1.260025e-07	ci right 1.785594e-06	k: 3	n:4910000
AGT   4910000 perm   9363 sec   (524 perm/sec)   p_kst 6.109980e-07   p_cons 9.952817e-01   p_joint 1.832994e-06

Joint ci ratio: 1.239611e+00	ci left: 8.364583e-07	ci right 3.472518e-06	k: 9	n:4920000
Cons ci ratio: 1.216863e-04	ci left: 9.952206e-01	ci right 9.953419e-01	k: 4896785	n:4920000
KS ci ratio: 1.959999e+00	ci left: 1.257464e-07	ci right 1.781965e-06	k: 3	n:4920000
AGT   4920000 perm   9400 sec   (523 perm/sec)   p_kst 6.097561e-07   p_cons 9.952815e-01   p_joint 1.829268e-06

Joint ci ratio: 1.239611e+00	ci left: 8.347616e-07	ci right 3.465475e-06	k: 9	n:4930000
Cons ci ratio: 1.215728e-04	ci left: 9.952198e-01	ci right 9.953410e-01	k: 4906734	n:4930000
KS ci ratio: 1.959999e+00	ci left: 1.254913e-07	ci right 1.778350e-06	k: 3	n:4930000
AGT   4930000 perm   9437 sec   (522 perm/sec)   p_kst 6.085193e-07   p_cons 9.952807e-01   p_joint 1.825558e-06

Joint ci ratio: 1.239611e+00	ci left: 8.330718e-07	ci right 3.458459e-06	k: 9	n:4940000
Cons ci ratio: 1.214361e-04	ci left: 9.952210e-01	ci right 9.953420e-01	k: 4916692	n:4940000
KS ci ratio: 1.959999e+00	ci left: 1.252373e-07	ci right 1.774751e-06	k: 3	n:4940000
AGT   4940000 perm   9474 sec   (521 perm/sec)   p_kst 6.072874e-07   p_cons 9.952818e-01   p_joint 1.821862e-06

Joint ci ratio: 1.239611e+00	ci left: 8.313888e-07	ci right 3.451473e-06	k: 9	n:4950000
Cons ci ratio: 1.213285e-04	ci left: 9.952198e-01	ci right 9.953408e-01	k: 4926639	n:4950000
KS ci ratio: 1.959999e+00	ci left: 1.249843e-07	ci right 1.771165e-06	k: 3	n:4950000
AGT   4950000 perm   9510 sec   (520 perm/sec)   p_kst 6.060606e-07   p_cons 9.952806e-01   p_joint 1.818182e-06

Joint ci ratio: 1.239611e+00	ci left: 8.297126e-07	ci right 3.444514e-06	k: 9	n:4960000
Cons ci ratio: 1.211874e-04	ci left: 9.952214e-01	ci right 9.953422e-01	k: 4936599	n:4960000
KS ci ratio: 1.959999e+00	ci left: 1.247323e-07	ci right 1.767594e-06	k: 3	n:4960000
AGT   4960000 perm   9548 sec   (520 perm/sec)   p_kst 6.048387e-07   p_cons 9.952821e-01   p_joint 1.814516e-06

Joint ci ratio: 1.239611e+00	ci left: 8.280432e-07	ci right 3.437583e-06	k: 9	n:4970000
Cons ci ratio: 1.210702e-04	ci left: 9.952211e-01	ci right 9.953417e-01	k: 4946550	n:4970000
KS ci ratio: 1.959999e+00	ci left: 1.244813e-07	ci right 1.764038e-06	k: 3	n:4970000
AGT   4970000 perm   9585 sec   (519 perm/sec)   p_kst 6.036217e-07   p_cons 9.952817e-01   p_joint 1.810865e-06

Joint ci ratio: 1.239611e+00	ci left: 8.263805e-07	ci right 3.430681e-06	k: 9	n:4980000
Cons ci ratio: 1.209429e-04	ci left: 9.952216e-01	ci right 9.953421e-01	k: 4956505	n:4980000
KS ci ratio: 1.959999e+00	ci left: 1.242314e-07	ci right 1.760496e-06	k: 3	n:4980000
AGT   4980000 perm   9622 sec   (518 perm/sec)   p_kst 6.024096e-07   p_cons 9.952821e-01   p_joint 1.807229e-06

Joint ci ratio: 1.239611e+00	ci left: 8.247244e-07	ci right 3.423806e-06	k: 9	n:4990000
Cons ci ratio: 1.208083e-04	ci left: 9.952227e-01	ci right 9.953431e-01	k: 4966463	n:4990000
KS ci ratio: 1.959999e+00	ci left: 1.239824e-07	ci right 1.756968e-06	k: 3	n:4990000
AGT   4990000 perm   9659 sec   (517 perm/sec)   p_kst 6.012024e-07   p_cons 9.952832e-01   p_joint 1.803607e-06

Joint ci ratio: 1.239611e+00	ci left: 8.230749e-07	ci right 3.416958e-06	k: 9	n:5000000
Cons ci ratio: 1.206793e-04	ci left: 9.952234e-01	ci right 9.953437e-01	k: 4976419	n:5000000
KS ci ratio: 1.959999e+00	ci left: 1.237344e-07	ci right 1.753454e-06	k: 3	n:5000000
AGT   5000000 perm   9696 sec   (516 perm/sec)   p_kst 6.000000e-07   p_cons 9.952838e-01   p_joint 1.800000e-06

Outputting figure to mutsig2_images.part000000000005/AGT.3_1474_5000000_6e-07_0.99528_1.8e-06.png
                gene_name: AGT
               theta_stop: 2.0 
                    nperm: 5000000 
                     p_ks: 6.00e-07 
        ci_ks_bounds_left: 1.24e-07 
       ci_ks_bounds_right: 1.75e-06 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1.80e-06 
     ci_joint_bounds_left: 8.23e-07 
    ci_joint_bounds_right: 3.42e-06 

Current progress: 50 percent done.
AIM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.050926e-02	ci left: 7.769169e-01	ci right 7.931167e-01	k: 7851	n:10000
KS ci ratio: 4.105657e-02	ci left: 4.669687e-01	ci right 4.866448e-01	k: 4768	n:10000
AIM2   10000 perm   1 sec   (6844 perm/sec)   p_kst 4.768000e-01   p_cons 7.851000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000005/AIM2.3_1052_10000_0.4768_0.7851_1.png
                gene_name: AIM2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
AGAP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.227196e-02	ci left: 2.748786e-01	ci right 2.926475e-01	k: 2837	n:10000
Cons ci ratio: 1.195997e-02	ci left: 9.092595e-01	ci right 9.202975e-01	k: 9149	n:10000
KS ci ratio: 1.010923e-01	ci left: 1.240539e-01	ci right 1.373620e-01	k: 1306	n:10000
AGAP6   10000 perm   2 sec   (6621 perm/sec)   p_kst 1.306000e-01   p_cons 9.149000e-01   p_joint 2.837000e-01

Joint ci ratio: 4.453673e-02	ci left: 2.729406e-01	ci right 2.854237e-01	k: 5583	n:20000
Cons ci ratio: 8.493294e-03	ci left: 9.102330e-01	ci right 9.180461e-01	k: 18284	n:20000
KS ci ratio: 7.194405e-02	ci left: 1.245805e-01	ci right 1.339276e-01	k: 2584	n:20000
AGAP6   20000 perm   3 sec   (5987 perm/sec)   p_kst 1.292000e-01   p_cons 9.142000e-01   p_joint 2.791500e-01

Outputting figure to mutsig2_images.part000000000005/AGAP6.2_2093_20000_0.1292_0.9142_0.27915.png
                gene_name: AGAP6
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000005
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 5 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1553>
Subject: Job 9876921: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1553>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000006> was used as the working directory.
Started at Fri Oct  5 22:23:31 2012
Results reported at Fri Oct  5 22:25:02 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000006.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000006.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 6  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000006.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    165.43 sec.
    Max Memory :      1134 MB
    Max Swap   :      3987 MB

    Max Processes  :         7
    Max Threads    :        55

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
6
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 6
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 6: processing genes 454 - 544
Calculating significance of each gene.
Using projection method.
454	AKAP5	1
455	AKAP6	1
456	AKAP7	1
457	AKAP8	1
458	AKAP8L	1.712797e-01
459	AKAP9	6.237519e-01
460	AKD1	1
461	AKIRIN1	1.481235e-02
462	AKIRIN2	1
463	AKNA	1
464	AKNAD1	6.616508e-02
465	AKR1A1	9.572225e-02
466	AKR1B1	1
467	AKR1B10	1
468	AKR1B15	1
469	AKR1C1	1
470	AKR1C2	1
471	AKR1C3	1
472	AKR1C4	1
473	AKR1D1	1
474	AKR1E2	1
475	AKR7A2	1
476	AKR7A3	1
477	AKR7L	8.622132e-02
478	AKT1	1.240631e-01
479	AKT1S1	1
480	AKT2	1
481	AKT3	1
482	AKTIP	1
483	ALAD	1
484	ALAS1	1
485	ALAS2	1
486	ALB	1
487	ALCAM	1
488	ALDH16A1	1
489	ALDH18A1	1
490	ALDH1A1	1
491	ALDH1A2	7.721368e-02
492	ALDH1A3	1.347195e-01
493	ALDH1B1	1
494	ALDH1L1	1
495	ALDH1L2	1
496	ALDH2	1
497	ALDH3A1	1
498	ALDH3A2	1
499	ALDH3B1	1
500	ALDH3B2	1
501	ALDH4A1	1
502	ALDH5A1	1
503	ALDH6A1	1
504	ALDH7A1	1
505	ALDH8A1	1
506	ALDH9A1	1
507	ALDOA	1
508	ALDOB	1
509	ALDOC	7.817572e-02
510	ALG1	1
511	ALG10	1
512	ALG10B	1
513	ALG11	1
514	ALG12	1
515	ALG13	1
516	ALG14	1
517	ALG1L	1
518	ALG1L2	1
519	ALG2	1
520	ALG3	1
521	ALG5	1
522	ALG6	1
523	ALG8	1
524	ALG9	1
525	ALK	1.487911e-01
526	ALKBH1	1
527	ALKBH2	1
528	ALKBH3	6.782569e-02
529	ALKBH4	1
530	ALKBH5	1
531	ALKBH6	1
532	ALKBH7	1
533	ALKBH8	1
534	ALLC	1
535	ALMS1	1
536	ALOX12	1
537	ALOX12B	1
538	ALOX15	1
539	ALOX15B	1
540	ALOX5	1
541	ALOX5AP	1
542	ALOXE3	1
543	ALPI	1.412954e-01
544	ALPK1	1
Done

Running MutSig 2:
Scatter job 6: processing genes 454 - 544
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000006
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 6 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1727>
Subject: Job 9876924: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1727>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000007> was used as the working directory.
Started at Fri Oct  5 22:23:59 2012
Results reported at Fri Oct  5 22:25:21 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000007.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000007.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 7  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000007.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     77.54 sec.
    Max Memory :      1908 MB
    Max Swap   :      4606 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
7
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 7
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 7: processing genes 545 - 635
Calculating significance of each gene.
Using projection method.
In gene ALPK2 the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 6561    n = 1	mu =   9.08e-07
545	ALPK2	1.622246e-01
546	ALPK3	1.806392e-01
547	ALPL	1
548	ALPP	1
549	ALPPL2	1
550	ALS2	2.212749e-01
551	ALS2CL	1
552	ALS2CR11	1
553	ALS2CR12	1
554	ALS2CR4	1
555	ALS2CR8	1
556	ALX1	1
557	ALX3	1
558	ALX4	1
559	AMAC1	1
560	AMAC1L2	6.011478e-02
561	AMAC1L3	1.144575e-01
562	AMACR	1
563	AMBN	7.015419e-02
564	AMBP	1
565	AMBRA1	1
566	AMD1	1
567	AMDHD1	1
568	AMDHD2	7.103001e-02
569	AMELX	1
570	AMELY	1
571	AMFR	1
572	AMH	1
573	AMHR2	1
574	AMICA1	1
575	AMIGO1	1
576	AMIGO2	1
577	AMIGO3	1
578	AMMECR1	1
579	AMMECR1L	1
580	AMN	1
581	AMN1	1
582	AMOT	1
583	AMOTL1	1
584	AMOTL2	1
585	AMPD1	1
586	AMPD2	1
587	AMPD3	1
588	AMPH	1
589	AMT	1
590	AMTN	1
591	AMY2A	1
592	AMY2B	7.863360e-02
593	AMZ1	1
594	AMZ2	1
595	ANAPC1	1
596	ANAPC10	1
597	ANAPC11	1
598	ANAPC13	1
599	ANAPC16	1
600	ANAPC2	1
601	ANAPC4	1
602	ANAPC5	1.785651e-01
603	ANAPC7	5.430111e-02
604	ANG	2.062512e-02
605	ANGEL1	1
606	ANGEL2	1
607	ANGPT1	9.270642e-02
608	ANGPT2	1
609	ANGPT4	1
610	ANGPTL1	1
611	ANGPTL2	1
612	ANGPTL3	1
613	ANGPTL4	1
614	ANGPTL5	1
615	ANGPTL6	1
616	ANGPTL7	1
617	ANK1	1
618	ANK2	6.569916e-02
619	ANK3	3.703629e-01
620	ANKAR	1
621	ANKDD1A	1.582241e-01
622	ANKFN1	1
623	ANKFY1	1
624	ANKH	4.075026e-02
625	ANKHD1	1
626	ANKHD1-EIF4EBP3	1
627	ANKIB1	1
628	ANKK1	1
629	ANKLE1	1
630	ANKLE2	1
631	ANKMY1	1
632	ANKMY2	6.590291e-02
633	ANKRA2	1
634	ANKRD1	1
635	ANKRD10	1
Done

Running MutSig 2:
Scatter job 7: processing genes 545 - 635
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ANK2
Processing conservation and coverage...
82% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.679107e-02	ci left: 5.217618e-01	ci right 5.414198e-01	k: 5316	n:10000
Cons ci ratio: 7.827576e-02	ci left: 1.925924e-01	ci right 2.083825e-01	k: 2004	n:10000
KS ci ratio: 1.098776e-01	ci left: 1.066631e-01	ci right 1.191634e-01	k: 1128	n:10000
ANK2   10000 perm   2 sec   (4099 perm/sec)   p_kst 1.128000e-01   p_cons 2.004000e-01   p_joint 5.316000e-01

Joint ci ratio: 2.627407e-02	ci left: 5.197519e-01	ci right 5.336403e-01	k: 10534	n:20000
Cons ci ratio: 5.375322e-02	ci left: 2.043726e-01	ci right 2.157119e-01	k: 4200	n:20000
KS ci ratio: 7.731122e-02	ci left: 1.094793e-01	ci right 1.183333e-01	k: 2277	n:20000
ANK2   20000 perm   7 sec   (2909 perm/sec)   p_kst 1.138500e-01   p_cons 2.100000e-01   p_joint 5.267000e-01

Outputting figure to mutsig2_images.part000000000007/ANK2.3_12123_20000_0.11385_0.21_0.5267.png
                gene_name: ANK2
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.53 

Current progress: 33 percent done.
ALPK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.526235e-02	ci left: 1.378591e-01	ci right 1.517485e-01	k: 1447	n:10000
Cons ci ratio: 5.613456e-02	ci left: 3.185017e-01	ci right 3.369988e-01	k: 3277	n:10000
KS ci ratio: 1.223415e-01	ci left: 8.737675e-02	ci right 9.886154e-02	k: 930	n:10000
ALPK2   10000 perm   2 sec   (5249 perm/sec)   p_kst 9.300000e-02   p_cons 3.277000e-01   p_joint 1.447000e-01

Joint ci ratio: 6.291445e-02	ci left: 1.574116e-01	ci right 1.676867e-01	k: 3250	n:20000
Cons ci ratio: 3.988305e-02	ci left: 3.191561e-01	ci right 3.321946e-01	k: 6513	n:20000
KS ci ratio: 8.771001e-02	ci left: 8.680364e-02	ci right 9.481578e-02	k: 1815	n:20000
ALPK2   20000 perm   4 sec   (4764 perm/sec)   p_kst 9.075000e-02   p_cons 3.256500e-01   p_joint 1.625000e-01

Outputting figure to mutsig2_images.part000000000007/ALPK2.2_6561_20000_0.09075_0.32565_0.1625.png
                gene_name: ALPK2
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.091 
        ci_ks_bounds_left: 0.087 
       ci_ks_bounds_right: 0.095 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 67 percent done.
ANK3
Processing conservation and coverage...
73% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.171684e-03	ci left: 9.727020e-01	ci right 9.788166e-01	k: 9759	n:10000
Cons ci ratio: 1.868988e-02	ci left: 8.070450e-01	ci right 8.223712e-01	k: 8148	n:10000
KS ci ratio: 1.788656e-02	ci left: 8.201532e-01	ci right 8.350554e-01	k: 8277	n:10000
ANK3   10000 perm   3 sec   (3772 perm/sec)   p_kst 8.277000e-01   p_cons 8.148000e-01   p_joint 9.759000e-01

Outputting figure to mutsig2_images.part000000000007/ANK3.2_13639_10000_0.8277_0.8148_0.9759.png
                gene_name: ANK3
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000007
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 7 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1709>
Subject: Job 9876926: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1709>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000008> was used as the working directory.
Started at Fri Oct  5 22:24:23 2012
Results reported at Fri Oct  5 22:27:26 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000008.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000008.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 8  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000008.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    178.56 sec.
    Max Memory :      2016 MB
    Max Swap   :      4673 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
8
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 8
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 8: processing genes 636 - 725
Calculating significance of each gene.
Using projection method.
636	ANKRD11	1
637	ANKRD12	2.165475e-01
638	ANKRD13A	1
639	ANKRD13B	1.442870e-01
640	ANKRD13C	5.481527e-02
641	ANKRD13D	1
642	ANKRD16	1
643	ANKRD17	4.842472e-01
644	ANKRD2	1
645	ANKRD20A1	1
In gene ANKRD20A4 the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 1830    n = 1	mu =   6.75e-07
646	ANKRD20A4	1.353500e-01
647	ANKRD22	1
648	ANKRD23	1
649	ANKRD24	1.090259e-01
650	ANKRD26	2.642440e-01
651	ANKRD27	1
652	ANKRD28	2.559929e-01
653	ANKRD29	8.569344e-02
654	ANKRD30A	3.040466e-01
655	ANKRD30B	6.722346e-02
656	ANKRD32	1
657	ANKRD33	1
658	ANKRD34A	1
659	ANKRD34B	1
660	ANKRD35	1
661	ANKRD36	1.821907e-04
662	ANKRD36B	1
663	ANKRD37	1
664	ANKRD39	1
665	ANKRD40	1
666	ANKRD42	1
667	ANKRD44	1
668	ANKRD45	1
669	ANKRD46	1
670	ANKRD49	1
671	ANKRD5	9.872951e-02
672	ANKRD50	1.053481e-01
673	ANKRD52	1.748711e-01
674	ANKRD53	1
675	ANKRD54	1
676	ANKRD55	1
677	ANKRD56	1.124716e-02
678	ANKRD57	1
679	ANKRD6	1
680	ANKRD7	1
681	ANKS1A	1
682	ANKS1B	1
683	ANKS3	1
684	ANKS4B	1
685	ANKS6	1
686	ANKZF1	1
687	ANLN	5.611712e-02
688	ANO1	1
689	ANO10	1.090936e-01
690	ANO2	1
691	ANO3	2.626576e-01
692	ANO4	3.445062e-03
693	ANO5	1
694	ANO6	1
695	ANO7	1
696	ANO8	1
697	ANO9	1
698	ANP32A	1
699	ANP32B	1
700	ANP32C	1
701	ANP32D	1
702	ANP32E	1
703	ANPEP	1
704	ANTXR1	1
705	ANTXR2	1
706	ANUBL1	1
707	ANXA1	1
708	ANXA10	1
709	ANXA11	1
710	ANXA13	3.922331e-02
711	ANXA2	4.488074e-02
712	ANXA3	1
713	ANXA4	1
714	ANXA5	1
715	ANXA6	1
716	ANXA7	1
717	ANXA9	1
718	AOAH	1
719	AOC2	1
720	AOC3	1
721	AOX1	3.031187e-01
722	AP1AR	1
723	AP1B1	1
724	AP1G1	1
725	AP1G2	1
Done

Running MutSig 2:
Scatter job 8: processing genes 636 - 725
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ANKRD36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.869758e-01	ci left: 3.815245e-02	ci right 4.611708e-02	k: 420	n:10000
Cons ci ratio: 1.813674e-02	ci left: 8.160871e-01	ci right 8.311239e-01	k: 8237	n:10000
KS ci ratio: 3.666552e-01	ci left: 9.230735e-03	ci right 1.346114e-02	k: 112	n:10000
ANKRD36   10000 perm   2 sec   (4009 perm/sec)   p_kst 1.120000e-02   p_cons 8.237000e-01   p_joint 4.200000e-02

Joint ci ratio: 1.223735e-01	ci left: 4.580631e-02	ci right 5.182574e-02	k: 975	n:20000
Cons ci ratio: 1.283298e-02	ci left: 8.181444e-01	ci right 8.287614e-01	k: 16470	n:20000
KS ci ratio: 2.536541e-01	ci left: 1.030287e-02	ci right 1.334154e-02	k: 235	n:20000
ANKRD36   20000 perm   8 sec   (2493 perm/sec)   p_kst 1.175000e-02   p_cons 8.235000e-01   p_joint 4.875000e-02

Joint ci ratio: 1.280313e-01	ci left: 2.835696e-02	ci right 3.226803e-02	k: 908	n:30000
Cons ci ratio: 1.054037e-02	ci left: 8.173882e-01	ci right 8.260827e-01	k: 24653	n:30000
KS ci ratio: 2.120119e-01	ci left: 1.007160e-02	ci right 1.249111e-02	k: 337	n:30000
ANKRD36   30000 perm   11 sec   (2713 perm/sec)   p_kst 1.123333e-02   p_cons 8.217667e-01   p_joint 3.026667e-02

Joint ci ratio: 9.768437e-02	ci left: 3.680646e-02	ci right 4.061088e-02	k: 1547	n:40000
Cons ci ratio: 9.090501e-03	ci left: 8.191986e-01	ci right 8.267044e-01	k: 32919	n:40000
KS ci ratio: 1.852084e-01	ci left: 1.004868e-02	ci right 1.212322e-02	k: 442	n:40000
ANKRD36   40000 perm   14 sec   (2896 perm/sec)   p_kst 1.105000e-02   p_cons 8.229750e-01   p_joint 3.867500e-02

Joint ci ratio: 1.004802e-01	ci left: 2.805377e-02	ci right 3.104118e-02	k: 1476	n:50000
Cons ci ratio: 8.107175e-03	ci left: 8.204519e-01	ci right 8.271504e-01	k: 41191	n:50000
KS ci ratio: 1.656180e-01	ci left: 1.016178e-02	ci right 1.201564e-02	k: 553	n:50000
ANKRD36   50000 perm   17 sec   (2990 perm/sec)   p_kst 1.106000e-02   p_cons 8.238200e-01   p_joint 2.952000e-02

Joint ci ratio: 8.861540e-02	ci left: 3.018201e-02	ci right 3.299687e-02	k: 1894	n:60000
Cons ci ratio: 7.384721e-03	ci left: 8.213819e-01	ci right 8.274867e-01	k: 49467	n:60000
KS ci ratio: 1.516269e-01	ci left: 1.018081e-02	ci right 1.186699e-02	k: 660	n:60000
ANKRD36   60000 perm   20 sec   (3056 perm/sec)   p_kst 1.100000e-02   p_cons 8.244500e-01   p_joint 3.156667e-02

Joint ci ratio: 9.249946e-02	ci left: 2.385601e-02	ci right 2.618359e-02	k: 1750	n:70000
Cons ci ratio: 6.831006e-03	ci left: 8.218627e-01	ci right 8.275103e-01	k: 57729	n:70000
KS ci ratio: 1.408573e-01	ci left: 1.017157e-02	ci right 1.172651e-02	k: 765	n:70000
ANKRD36   70000 perm   23 sec   (3055 perm/sec)   p_kst 1.092857e-02   p_cons 8.247000e-01   p_joint 2.500000e-02

Joint ci ratio: 7.944033e-02	ci left: 2.836286e-02	ci right 3.072143e-02	k: 2362	n:80000
Cons ci ratio: 6.403895e-03	ci left: 8.214060e-01	ci right 8.266955e-01	k: 65925	n:80000
KS ci ratio: 1.320983e-01	ci left: 1.016784e-02	ci right 1.161796e-02	k: 870	n:80000
ANKRD36   80000 perm   26 sec   (3048 perm/sec)   p_kst 1.087500e-02   p_cons 8.240625e-01   p_joint 2.952500e-02

Joint ci ratio: 6.993288e-02	ci left: 3.255238e-02	ci right 3.492224e-02	k: 3035	n:90000
Cons ci ratio: 6.040796e-03	ci left: 8.214067e-01	ci right 8.263947e-01	k: 74152	n:90000
KS ci ratio: 1.251177e-01	ci left: 1.011344e-02	ci right 1.147392e-02	k: 970	n:90000
ANKRD36   90000 perm   29 sec   (3064 perm/sec)   p_kst 1.077778e-02   p_cons 8.239111e-01   p_joint 3.372222e-02

Joint ci ratio: 6.593399e-02	ci left: 3.301321e-02	ci right 3.527392e-02	k: 3413	n:100000
Cons ci ratio: 5.728054e-03	ci left: 8.216756e-01	ci right 8.264056e-01	k: 82405	n:100000
KS ci ratio: 1.186354e-01	ci left: 1.015889e-02	ci right 1.144972e-02	k: 1079	n:100000
ANKRD36   100000 perm   33 sec   (3064 perm/sec)   p_kst 1.079000e-02   p_cons 8.240500e-01   p_joint 3.413000e-02

Joint ci ratio: 6.223693e-02	ci left: 3.372468e-02	ci right 3.589994e-02	k: 3828	n:110000
Cons ci ratio: 5.460198e-03	ci left: 8.218552e-01	ci right 8.263640e-01	k: 90653	n:110000
KS ci ratio: 1.131626e-01	ci left: 1.017990e-02	ci right 1.140974e-02	k: 1186	n:110000
ANKRD36   110000 perm   36 sec   (3047 perm/sec)   p_kst 1.078182e-02   p_cons 8.241182e-01   p_joint 3.480000e-02

Joint ci ratio: 6.169252e-02	ci left: 3.154490e-02	ci right 3.356110e-02	k: 3905	n:120000
Cons ci ratio: 5.230620e-03	ci left: 8.217915e-01	ci right 8.261095e-01	k: 98875	n:120000
KS ci ratio: 1.085532e-01	ci left: 1.016611e-02	ci right 1.134105e-02	k: 1289	n:120000
ANKRD36   120000 perm   40 sec   (3031 perm/sec)   p_kst 1.074167e-02   p_cons 8.239583e-01   p_joint 3.254167e-02

Joint ci ratio: 6.011820e-02	ci left: 3.071633e-02	ci right 3.262771e-02	k: 4116	n:130000
Cons ci ratio: 5.025226e-03	ci left: 8.218879e-01	ci right 8.260361e-01	k: 107116	n:130000
KS ci ratio: 1.039380e-01	ci left: 1.026021e-02	ci right 1.139254e-02	k: 1406	n:130000
ANKRD36   130000 perm   43 sec   (3018 perm/sec)   p_kst 1.081538e-02   p_cons 8.239692e-01   p_joint 3.166154e-02

Joint ci ratio: 5.794278e-02	ci left: 3.073910e-02	ci right 3.258036e-02	k: 4431	n:140000
Cons ci ratio: 4.842987e-03	ci left: 8.219303e-01	ci right 8.259277e-01	k: 115351	n:140000
KS ci ratio: 9.989860e-02	ci left: 1.033481e-02	ci right 1.142844e-02	k: 1522	n:140000
ANKRD36   140000 perm   47 sec   (3001 perm/sec)   p_kst 1.087143e-02   p_cons 8.239357e-01   p_joint 3.165000e-02

Outputting figure to mutsig2_images.part000000000008/ANKRD36.4_6126_140000_0.010871_0.82394_0.03165.png
                gene_name: ANKRD36
               theta_stop: 0.100 
                    nperm: 140000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.010 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.033 

Current progress: 25 percent done.
ANO4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.661901e-01	ci left: 4.830553e-02	ci right 5.715732e-02	k: 526	n:10000
Cons ci ratio: 1.436501e-01	ci left: 6.430174e-02	ci right 7.435091e-02	k: 692	n:10000
KS ci ratio: 7.934133e-02	ci left: 1.883574e-01	ci right 2.040200e-01	k: 1961	n:10000
ANO4   10000 perm   2 sec   (5329 perm/sec)   p_kst 1.961000e-01   p_cons 6.920000e-02   p_joint 5.260000e-02

Joint ci ratio: 9.606744e-02	ci left: 7.314641e-02	ci right 8.057716e-02	k: 1536	n:20000
Cons ci ratio: 1.019341e-01	ci left: 6.532996e-02	ci right 7.239601e-02	k: 1376	n:20000
KS ci ratio: 5.652499e-02	ci left: 1.883417e-01	ci right 1.993475e-01	k: 3876	n:20000
ANO4   20000 perm   4 sec   (4631 perm/sec)   p_kst 1.938000e-01   p_cons 6.880000e-02   p_joint 7.680000e-02

Joint ci ratio: 5.698716e-02	ci left: 1.323373e-01	ci right 1.401332e-01	k: 4086	n:30000
Cons ci ratio: 8.411855e-02	ci left: 6.465365e-02	ci right 7.036379e-02	k: 2024	n:30000
KS ci ratio: 4.620934e-02	ci left: 1.889769e-01	ci right 1.979492e-01	k: 5803	n:30000
ANO4   30000 perm   7 sec   (4451 perm/sec)   p_kst 1.934333e-01   p_cons 6.746667e-02   p_joint 1.362000e-01

Outputting figure to mutsig2_images.part000000000008/ANO4.3_2863_30000_0.19343_0.067467_0.1362.png
                gene_name: ANO4
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.067 
      ci_cons_bounds_left: 0.065 
     ci_cons_bounds_right: 0.070 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 50 percent done.
ANKRD56
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.917731e-02	ci left: 7.990245e-01	ci right 8.145964e-01	k: 8069	n:10000
Cons ci ratio: 1.752814e-02	ci left: 8.259500e-01	ci right 8.406553e-01	k: 8334	n:10000
KS ci ratio: 6.871987e-02	ci left: 2.369909e-01	ci right 2.539576e-01	k: 2454	n:10000
ANKRD56   10000 perm   2 sec   (5535 perm/sec)   p_kst 2.454000e-01   p_cons 8.334000e-01   p_joint 8.069000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD56.2_2386_10000_0.2454_0.8334_0.8069.png
                gene_name: ANKRD56
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 75 percent done.
ANLN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.222604e-02	ci left: 2.751757e-01	ci right 2.929502e-01	k: 2840	n:10000
Cons ci ratio: 4.801080e-02	ci left: 3.902789e-01	ci right 4.095794e-01	k: 3999	n:10000
KS ci ratio: 1.566850e-01	ci left: 5.426821e-02	ci right 6.359080e-02	k: 588	n:10000
ANLN   10000 perm   2 sec   (5554 perm/sec)   p_kst 5.880000e-02   p_cons 3.999000e-01   p_joint 2.840000e-01

Joint ci ratio: 4.628719e-02	ci left: 2.578014e-01	ci right 2.700673e-01	k: 5278	n:20000
Cons ci ratio: 3.382151e-02	ci left: 3.949453e-01	ci right 4.085833e-01	k: 8035	n:20000
KS ci ratio: 1.107455e-01	ci left: 5.567637e-02	ci right 6.225258e-02	k: 1178	n:20000
ANLN   20000 perm   4 sec   (4949 perm/sec)   p_kst 5.890000e-02   p_cons 4.017500e-01   p_joint 2.639000e-01

Joint ci ratio: 3.735267e-02	ci left: 2.634910e-01	ci right 2.735539e-01	k: 8055	n:30000
Cons ci ratio: 2.771874e-02	ci left: 3.944164e-01	ci right 4.055363e-01	k: 11999	n:30000
KS ci ratio: 8.984505e-02	ci left: 5.697974e-02	ci right 6.237259e-02	k: 1789	n:30000
ANLN   30000 perm   6 sec   (4711 perm/sec)   p_kst 5.963333e-02   p_cons 3.999667e-01   p_joint 2.685000e-01

Outputting figure to mutsig2_images.part000000000008/ANLN.2_3471_30000_0.059633_0.39997_0.2685.png
                gene_name: ANLN
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000008
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 8 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1655>
Subject: Job 9876930: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1655>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000009> was used as the working directory.
Started at Fri Oct  5 22:24:29 2012
Results reported at Fri Oct  5 22:26:42 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000009.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000009.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 9  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000009.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    148.22 sec.
    Max Memory :      2049 MB
    Max Swap   :      4570 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
9
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 9
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 9: processing genes 726 - 816
Calculating significance of each gene.
Using projection method.
726	AP1M1	1
727	AP1M2	1
728	AP1S1	1
729	AP1S2	1
730	AP1S3	1
731	AP2A1	1
732	AP2A2	1
733	AP2B1	1
734	AP2M1	1
735	AP2S1	1
736	AP3B1	1
737	AP3B2	1.971010e-03
738	AP3D1	1
739	AP3M1	1
740	AP3M2	1
741	AP3S1	1
742	AP3S2	1
743	AP4B1	1.165705e-02
744	AP4E1	1
745	AP4M1	1
746	AP4S1	1
747	APAF1	2.847951e-01
748	APBA1	1
749	APBA2	1
750	APBA3	1
751	APBB1	4.321310e-02
752	APBB1IP	1
753	APBB2	1
754	APBB3	1.516983e-01
755	APC	1
756	APC2	1
757	APCDD1	1
758	APCDD1L	1
759	APCS	1
760	APEH	1
761	APEX1	1
762	APEX2	1
763	APH1A	1
764	APH1B	1
765	API5	1
766	APIP	1
767	APITD1	1
768	APLF	1
769	APLNR	1
770	APLP1	1
771	APLP2	1.202390e-01
772	APOA1	1
773	APOA1BP	1
774	APOA2	1
775	APOA4	1
776	APOA5	1
777	APOB	3.443813e-01
778	APOB48R	1
779	APOBEC1	1
780	APOBEC2	1
781	APOBEC3A	1
782	APOBEC3B	1
783	APOBEC3C	1
784	APOBEC3D	1
785	APOBEC3F	1
786	APOBEC3G	1
787	APOBEC3H	1
788	APOBEC4	1
789	APOC1	1
790	APOC2	1
791	APOC3	1
792	APOC4	1
793	APOD	1
794	APOE	1
795	APOF	9.011480e-02
796	APOH	1
797	APOL1	1.404369e-01
798	APOL2	1
799	APOL3	1
800	APOL4	1
801	APOL5	1
802	APOL6	1
803	APOLD1	1
804	APOM	1
805	APOO	1
806	APOOL	1
807	APP	1
808	APPBP2	1
809	APPL1	1.473118e-01
810	APPL2	1.108624e-01
811	APRT	1
812	APTX	1
813	AQP1	1
814	AQP10	1
815	AQP11	1
816	AQP12A	1
Done

Running MutSig 2:
Scatter job 9: processing genes 726 - 816
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
AP3B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.685760e-02	ci left: 5.208609e-01	ci right 5.405212e-01	k: 5307	n:10000
Cons ci ratio: 2.764588e-02	ci left: 6.584707e-01	ci right 6.770315e-01	k: 6678	n:10000
KS ci ratio: 4.890240e-02	ci left: 3.815183e-01	ci right 4.007452e-01	k: 3911	n:10000
AP3B2   10000 perm   2 sec   (5051 perm/sec)   p_kst 3.911000e-01   p_cons 6.678000e-01   p_joint 5.307000e-01

Outputting figure to mutsig2_images.part000000000009/AP3B2.3_3277_10000_0.3911_0.6678_0.5307.png
                gene_name: AP3B2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 33 percent done.
AP4B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.945788e-01	ci left: 3.519511e-02	ci right 4.287640e-02	k: 389	n:10000
Cons ci ratio: 6.145499e-03	ci left: 9.729141e-01	ci right 9.790043e-01	k: 9761	n:10000
KS ci ratio: 3.209154e-01	ci left: 1.234131e-02	ci right 1.714746e-02	k: 146	n:10000
AP4B1   10000 perm   2 sec   (6228 perm/sec)   p_kst 1.460000e-02   p_cons 9.761000e-01   p_joint 3.890000e-02

Joint ci ratio: 1.212672e-01	ci left: 4.663162e-02	ci right 5.270016e-02	k: 992	n:20000
Cons ci ratio: 4.501284e-03	ci left: 9.720639e-01	ci right 9.764968e-01	k: 19487	n:20000
KS ci ratio: 2.265363e-01	ci left: 1.307791e-02	ci right 1.646531e-02	k: 294	n:20000
AP4B1   20000 perm   4 sec   (5520 perm/sec)   p_kst 1.470000e-02   p_cons 9.743500e-01   p_joint 4.960000e-02

Joint ci ratio: 9.104098e-02	ci left: 5.554431e-02	ci right 6.087498e-02	k: 1745	n:30000
Cons ci ratio: 3.670542e-03	ci left: 9.725495e-01	ci right 9.761578e-01	k: 29232	n:30000
KS ci ratio: 1.861452e-01	ci left: 1.320961e-02	ci right 1.595225e-02	k: 436	n:30000
AP4B1   30000 perm   6 sec   (5187 perm/sec)   p_kst 1.453333e-02   p_cons 9.744000e-01   p_joint 5.816667e-02

Joint ci ratio: 1.216539e-01	ci left: 2.375887e-02	ci right 2.686057e-02	k: 1011	n:40000
Cons ci ratio: 3.210001e-03	ci left: 9.722903e-01	ci right 9.754404e-01	k: 38956	n:40000
KS ci ratio: 1.580264e-01	ci left: 1.395173e-02	ci right 1.636941e-02	k: 605	n:40000
AP4B1   40000 perm   8 sec   (5042 perm/sec)   p_kst 1.512500e-02   p_cons 9.739000e-01   p_joint 2.527500e-02

Joint ci ratio: 1.089434e-01	ci left: 2.386329e-02	ci right 2.663220e-02	k: 1261	n:50000
Cons ci ratio: 2.897839e-03	ci left: 9.719723e-01	ci right 9.748124e-01	k: 48671	n:50000
KS ci ratio: 1.415808e-01	ci left: 1.402999e-02	ci right 1.618684e-02	k: 754	n:50000
AP4B1   50000 perm   10 sec   (4918 perm/sec)   p_kst 1.508000e-02   p_cons 9.734200e-01   p_joint 2.522000e-02

Joint ci ratio: 9.949866e-02	ci left: 2.396058e-02	ci right 2.648563e-02	k: 1512	n:60000
Cons ci ratio: 2.646227e-03	ci left: 9.720810e-01	ci right 9.746729e-01	k: 58404	n:60000
KS ci ratio: 1.288846e-01	ci left: 1.420393e-02	ci right 1.617671e-02	k: 910	n:60000
AP4B1   60000 perm   12 sec   (4815 perm/sec)   p_kst 1.516667e-02   p_cons 9.734000e-01   p_joint 2.520000e-02

Joint ci ratio: 9.161779e-02	ci left: 2.431685e-02	ci right 2.666557e-02	k: 1783	n:70000
Cons ci ratio: 2.441037e-03	ci left: 9.723708e-01	ci right 9.747612e-01	k: 68151	n:70000
KS ci ratio: 1.190307e-01	ci left: 1.434825e-02	ci right 1.617797e-02	k: 1067	n:70000
AP4B1   70000 perm   15 sec   (4629 perm/sec)   p_kst 1.524286e-02   p_cons 9.735857e-01   p_joint 2.547143e-02

Joint ci ratio: 6.328663e-02	ci left: 4.431237e-02	ci right 4.722068e-02	k: 3660	n:80000
Cons ci ratio: 2.292645e-03	ci left: 9.722359e-01	ci right 9.744796e-01	k: 77870	n:80000
KS ci ratio: 1.109089e-01	ci left: 1.452160e-02	ci right 1.623881e-02	k: 1229	n:80000
AP4B1   80000 perm   18 sec   (4549 perm/sec)   p_kst 1.536250e-02   p_cons 9.733750e-01   p_joint 4.575000e-02

Joint ci ratio: 5.651451e-02	ci left: 4.930854e-02	ci right 5.218717e-02	k: 4566	n:90000
Cons ci ratio: 2.155796e-03	ci left: 9.724410e-01	ci right 9.745505e-01	k: 87616	n:90000
KS ci ratio: 1.048259e-01	ci left: 1.449736e-02	ci right 1.611188e-02	k: 1376	n:90000
AP4B1   90000 perm   20 sec   (4471 perm/sec)   p_kst 1.528889e-02   p_cons 9.735111e-01   p_joint 5.073333e-02

Joint ci ratio: 5.372292e-02	ci left: 4.919035e-02	ci right 5.191579e-02	k: 5054	n:100000
Cons ci ratio: 2.042793e-03	ci left: 9.725569e-01	ci right 9.745555e-01	k: 97357	n:100000
KS ci ratio: 9.957894e-02	ci left: 1.449955e-02	ci right 1.602875e-02	k: 1525	n:100000
AP4B1   100000 perm   23 sec   (4374 perm/sec)   p_kst 1.525000e-02   p_cons 9.735700e-01   p_joint 5.054000e-02

Outputting figure to mutsig2_images.part000000000009/AP4B1.2_2260_100000_0.01525_0.97357_0.05054.png
                gene_name: AP4B1
               theta_stop: 0.100 
                    nperm: 100000 
                     p_ks: 0.015 
        ci_ks_bounds_left: 0.014 
       ci_ks_bounds_right: 0.016 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.052 

Current progress: 67 percent done.
APOB
Processing conservation and coverage...
72% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.285168e-02	ci left: 4.457032e-01	ci right 4.653227e-01	k: 4555	n:10000
Cons ci ratio: 7.510200e-02	ci left: 2.059958e-01	ci right 2.221711e-01	k: 2140	n:10000
KS ci ratio: 3.399460e-02	ci left: 5.609292e-01	ci right 5.804296e-01	k: 5707	n:10000
APOB   10000 perm   3 sec   (3115 perm/sec)   p_kst 5.707000e-01   p_cons 2.140000e-01   p_joint 4.555000e-01

Outputting figure to mutsig2_images.part000000000009/APOB.2_13808_10000_0.5707_0.214_0.4555.png
                gene_name: APOB
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000009
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 9 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1727>
Subject: Job 9876933: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1727>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000010> was used as the working directory.
Started at Fri Oct  5 22:25:00 2012
Results reported at Fri Oct  5 22:27:05 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000010.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000010.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 10  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000010.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    120.31 sec.
    Max Memory :      2369 MB
    Max Swap   :      4671 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
10
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 10
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 10: processing genes 817 - 907
Calculating significance of each gene.
Using projection method.
817	AQP12B	1
818	AQP2	1
819	AQP3	1
820	AQP4	1
821	AQP5	1
822	AQP6	1
823	AQP7	1.149986e-02
824	AQP8	1
825	AQP9	2.209566e-02
826	AQPEP	1
827	AQR	1
828	AR	1
829	ARAF	1
830	ARAP1	1
831	ARAP2	1
832	ARAP3	4.196408e-01
833	ARC	1
834	ARCN1	1
835	AREG	1
836	ARF1	1
837	ARF3	1
838	ARF4	1
839	ARF5	1
840	ARF6	1
841	ARFGAP1	1
842	ARFGAP2	4.911842e-02
843	ARFGAP3	2.867360e-02
844	ARFGEF1	1
845	ARFGEF2	1
846	ARFIP1	1
847	ARFIP2	1
848	ARFRP1	1
849	ARG1	1
850	ARG2	1.055142e-01
851	ARGFX	1.677170e-02
852	ARGLU1	1
853	ARHGAP1	1
854	ARHGAP10	1
855	ARHGAP11A	7.288048e-02
856	ARHGAP11B	1.245962e-06
857	ARHGAP12	1
858	ARHGAP15	1
859	ARHGAP17	1
860	ARHGAP18	1
861	ARHGAP19	1
862	ARHGAP20	1
863	ARHGAP21	1.376837e-01
864	ARHGAP22	1.078243e-01
865	ARHGAP24	1
866	ARHGAP25	1
867	ARHGAP26	1
868	ARHGAP27	1
869	ARHGAP28	1
870	ARHGAP29	1
871	ARHGAP30	3.116270e-02
872	ARHGAP31	1
In gene ARHGAP32 the following bins exceed PROBCAP:
    PRAD-CH-5772	categ 6	N = 6308    n = 1	mu =   3.94e-07
873	ARHGAP32	3.833797e-02
874	ARHGAP33	1
875	ARHGAP36	8.754949e-02
876	ARHGAP39	1
877	ARHGAP4	1
878	ARHGAP5	1
879	ARHGAP6	1.139257e-01
880	ARHGAP8	1
881	ARHGAP9	1
882	ARHGDIA	1
883	ARHGDIB	1.797719e-02
884	ARHGDIG	1
885	ARHGEF1	1
886	ARHGEF10	7.446960e-02
887	ARHGEF10L	3.505447e-01
888	ARHGEF11	1
889	ARHGEF12	1
890	ARHGEF15	1.008050e-01
891	ARHGEF16	1
892	ARHGEF17	1
893	ARHGEF18	1
894	ARHGEF19	1
895	ARHGEF2	1
896	ARHGEF3	1
897	ARHGEF35	1
898	ARHGEF37	1.658772e-01
899	ARHGEF38	1
900	ARHGEF4	1
901	ARHGEF5	1
902	ARHGEF6	1
903	ARHGEF7	1
904	ARHGEF9	1
905	ARID1A	1
906	ARID1B	3.417937e-01
907	ARID2	8.096042e-02
Done

Running MutSig 2:
Scatter job 10: processing genes 817 - 907
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ARHGAP11B
Processing conservation and coverage...
Processing mutations... 
Skipping 3 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 14 percent done.
ARHGAP32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.245627e-02	ci left: 2.736903e-01	ci right 2.914365e-01	k: 2825	n:10000
Cons ci ratio: 1.463924e-01	ci left: 6.198316e-02	ci right 7.187095e-02	k: 668	n:10000
KS ci ratio: 1.979647e-02	ci left: 7.887776e-01	ci right 8.046492e-01	k: 7968	n:10000
ARHGAP32   10000 perm   2 sec   (4974 perm/sec)   p_kst 7.968000e-01   p_cons 6.680000e-02   p_joint 2.825000e-01

Joint ci ratio: 3.764581e-02	ci left: 3.448801e-01	ci right 3.581631e-01	k: 7030	n:20000
Cons ci ratio: 1.082314e-01	ci left: 5.820936e-02	ci right 6.491880e-02	k: 1230	n:20000
KS ci ratio: 1.429994e-02	ci left: 7.840862e-01	ci right 7.954294e-01	k: 15796	n:20000
ARHGAP32   20000 perm   6 sec   (3254 perm/sec)   p_kst 7.898000e-01   p_cons 6.150000e-02   p_joint 3.515000e-01

Joint ci ratio: 3.577107e-02	ci left: 2.807250e-01	ci right 2.909832e-01	k: 8575	n:30000
Cons ci ratio: 8.843500e-02	ci left: 5.874203e-02	ci right 6.420994e-02	k: 1843	n:30000
KS ci ratio: 1.158316e-02	ci left: 7.877991e-01	ci right 7.970108e-01	k: 23773	n:30000
ARHGAP32   30000 perm   9 sec   (3470 perm/sec)   p_kst 7.924333e-01   p_cons 6.143333e-02   p_joint 2.858333e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP32.3_6352_30000_0.79243_0.061433_0.28583.png
                gene_name: ARHGAP32
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.064 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 29 percent done.
AQR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.710413e-01	ci left: 4.561810e-02	ci right 5.424649e-02	k: 498	n:10000
Cons ci ratio: 4.054989e-02	ci left: 4.731620e-01	ci right 4.928479e-01	k: 4830	n:10000
KS ci ratio: 3.650251e-01	ci left: 9.321618e-03	ci right 1.357016e-02	k: 113	n:10000
AQR   10000 perm   2 sec   (5931 perm/sec)   p_kst 1.130000e-02   p_cons 4.830000e-01   p_joint 4.980000e-02

Joint ci ratio: 9.925096e-02	ci left: 6.874809e-02	ci right 7.597683e-02	k: 1446	n:20000
Cons ci ratio: 2.874433e-02	ci left: 4.748531e-01	ci right 4.887522e-01	k: 9636	n:20000
KS ci ratio: 2.640385e-01	ci left: 9.460703e-03	ci right 1.238410e-02	k: 217	n:20000
AQR   20000 perm   4 sec   (5309 perm/sec)   p_kst 1.085000e-02   p_cons 4.818000e-01   p_joint 7.230000e-02

Joint ci ratio: 7.992279e-02	ci left: 7.125883e-02	ci right 7.722394e-02	k: 2226	n:30000
Cons ci ratio: 2.353145e-02	ci left: 4.748318e-01	ci right 4.861719e-01	k: 14415	n:30000
KS ci ratio: 2.233110e-01	ci left: 9.030982e-03	ci right 1.133203e-02	k: 304	n:30000
AQR   30000 perm   6 sec   (5086 perm/sec)   p_kst 1.013333e-02   p_cons 4.805000e-01   p_joint 7.420000e-02

Joint ci ratio: 6.937115e-02	ci left: 7.135479e-02	ci right 7.650727e-02	k: 2956	n:40000
Cons ci ratio: 2.033731e-02	ci left: 4.766174e-01	ci right 4.864353e-01	k: 19261	n:40000
KS ci ratio: 1.937954e-01	ci left: 9.143308e-03	ci right 1.112878e-02	k: 404	n:40000
AQR   40000 perm   8 sec   (4939 perm/sec)   p_kst 1.010000e-02   p_cons 4.815250e-01   p_joint 7.390000e-02

Joint ci ratio: 6.216798e-02	ci left: 7.136546e-02	ci right 7.596418e-02	k: 3682	n:50000
Cons ci ratio: 1.820879e-02	ci left: 4.766318e-01	ci right 4.854104e-01	k: 24051	n:50000
KS ci ratio: 1.746037e-01	ci left: 9.108141e-03	ci right 1.086945e-02	k: 498	n:50000
AQR   50000 perm   10 sec   (4808 perm/sec)   p_kst 9.960000e-03   p_cons 4.810200e-01   p_joint 7.364000e-02

Joint ci ratio: 5.956011e-02	ci left: 6.532436e-02	ci right 6.935095e-02	k: 4039	n:60000
Cons ci ratio: 1.658811e-02	ci left: 4.780444e-01	ci right 4.860573e-01	k: 28923	n:60000
KS ci ratio: 1.600401e-01	ci left: 9.107247e-03	ci right 1.070736e-02	k: 593	n:60000
AQR   60000 perm   13 sec   (4706 perm/sec)   p_kst 9.883333e-03   p_cons 4.820500e-01   p_joint 6.731667e-02

Joint ci ratio: 5.074797e-02	ci left: 7.654617e-02	ci right 8.054599e-02	k: 5497	n:70000
Cons ci ratio: 1.537547e-02	ci left: 4.777637e-01	ci right 4.851807e-01	k: 33703	n:70000
KS ci ratio: 1.472061e-01	ci left: 9.289904e-03	ci right 1.077970e-02	k: 701	n:70000
AQR   70000 perm   15 sec   (4619 perm/sec)   p_kst 1.001429e-02   p_cons 4.814714e-01   p_joint 7.852857e-02

Joint ci ratio: 3.734774e-02	ci left: 1.187724e-01	ci right 1.233051e-01	k: 9682	n:80000
Cons ci ratio: 1.438921e-02	ci left: 4.777697e-01	ci right 4.847067e-01	k: 38499	n:80000
KS ci ratio: 1.366943e-01	ci left: 9.479057e-03	ci right 1.088181e-02	k: 813	n:80000
AQR   80000 perm   18 sec   (4538 perm/sec)   p_kst 1.016250e-02   p_cons 4.812375e-01   p_joint 1.210250e-01

Joint ci ratio: 3.517210e-02	ci left: 1.191407e-01	ci right 1.234171e-01	k: 10914	n:90000
Cons ci ratio: 1.357216e-02	ci left: 4.777531e-01	ci right 4.842926e-01	k: 43292	n:90000
KS ci ratio: 1.284347e-01	ci left: 9.586091e-03	ci right 1.091243e-02	k: 921	n:90000
AQR   90000 perm   20 sec   (4455 perm/sec)   p_kst 1.023333e-02   p_cons 4.810222e-01   p_joint 1.212667e-01

Joint ci ratio: 3.331217e-02	ci left: 1.196002e-01	ci right 1.236618e-01	k: 12162	n:100000
Cons ci ratio: 1.288376e-02	ci left: 4.776089e-01	ci right 4.838122e-01	k: 48071	n:100000
KS ci ratio: 1.214519e-01	ci left: 9.683460e-03	ci right 1.094519e-02	k: 1030	n:100000
AQR   100000 perm   23 sec   (4332 perm/sec)   p_kst 1.030000e-02   p_cons 4.807100e-01   p_joint 1.216200e-01

Joint ci ratio: 3.191185e-02	ci left: 1.186990e-01	ci right 1.225574e-01	k: 13268	n:110000
Cons ci ratio: 1.228087e-02	ci left: 4.778889e-01	ci right 4.838031e-01	k: 52893	n:110000
KS ci ratio: 1.163767e-01	ci left: 9.614616e-03	ci right 1.081142e-02	k: 1122	n:110000
AQR   110000 perm   26 sec   (4268 perm/sec)   p_kst 1.020000e-02   p_cons 4.808455e-01   p_joint 1.206182e-01

Joint ci ratio: 3.075693e-02	ci left: 1.173883e-01	ci right 1.210635e-01	k: 14306	n:120000
Cons ci ratio: 1.176226e-02	ci left: 4.778361e-01	ci right 4.834981e-01	k: 57680	n:120000
KS ci ratio: 1.112888e-01	ci left: 9.663503e-03	ci right 1.081035e-02	k: 1227	n:120000
AQR   120000 perm   29 sec   (4201 perm/sec)   p_kst 1.022500e-02   p_cons 4.806667e-01   p_joint 1.192167e-01

Joint ci ratio: 2.927039e-02	ci left: 1.194611e-01	ci right 1.230173e-01	k: 15760	n:130000
Cons ci ratio: 1.128389e-02	ci left: 4.786959e-01	ci right 4.841357e-01	k: 62584	n:130000
KS ci ratio: 1.068148e-01	ci left: 9.705833e-03	ci right 1.080848e-02	k: 1332	n:130000
AQR   130000 perm   31 sec   (4135 perm/sec)   p_kst 1.024615e-02   p_cons 4.814154e-01   p_joint 1.212308e-01

Joint ci ratio: 2.824011e-02	ci left: 1.192676e-01	ci right 1.226910e-01	k: 16936	n:140000
Cons ci ratio: 1.087782e-02	ci left: 4.785939e-01	ci right 4.838355e-01	k: 67370	n:140000
KS ci ratio: 1.032765e-01	ci left: 9.659382e-03	ci right 1.071820e-02	k: 1425	n:140000
AQR   140000 perm   34 sec   (4077 perm/sec)   p_kst 1.017857e-02   p_cons 4.812143e-01   p_joint 1.209714e-01

Joint ci ratio: 2.778284e-02	ci left: 1.155365e-01	ci right 1.187983e-01	k: 17574	n:150000
Cons ci ratio: 1.051405e-02	ci left: 4.784419e-01	ci right 4.835055e-01	k: 72146	n:150000
KS ci ratio: 9.983595e-02	ci left: 9.665159e-03	ci right 1.068724e-02	k: 1525	n:150000
AQR   150000 perm   37 sec   (4014 perm/sec)   p_kst 1.016667e-02   p_cons 4.809733e-01   p_joint 1.171600e-01

Outputting figure to mutsig2_images.part000000000010/AQR.2_4598_150000_0.010167_0.48097_0.11716.png
                gene_name: AQR
               theta_stop: 0.100 
                    nperm: 150000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0097 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 43 percent done.
ARHGAP21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.012706e-01	ci left: 1.236626e-01	ci right 1.369535e-01	k: 1302	n:10000
Cons ci ratio: 1.013153e-01	ci left: 1.235648e-01	ci right 1.368514e-01	k: 1301	n:10000
KS ci ratio: 6.478410e-02	ci left: 2.592386e-01	ci right 2.766968e-01	k: 2679	n:10000
ARHGAP21   10000 perm   2 sec   (5404 perm/sec)   p_kst 2.679000e-01   p_cons 1.301000e-01   p_joint 1.302000e-01

Joint ci ratio: 6.241084e-02	ci left: 1.595836e-01	ci right 1.699141e-01	k: 3294	n:20000
Cons ci ratio: 6.933349e-02	ci left: 1.330016e-01	ci right 1.426040e-01	k: 2755	n:20000
KS ci ratio: 4.603245e-02	ci left: 2.599352e-01	ci right 2.722329e-01	k: 5321	n:20000
ARHGAP21   20000 perm   4 sec   (4900 perm/sec)   p_kst 2.660500e-01   p_cons 1.377500e-01   p_joint 1.647000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP21.2_5977_20000_0.26605_0.13775_0.1647.png
                gene_name: ARHGAP21
               theta_stop: 0.069 
                    nperm: 20000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 57 percent done.
ARHGAP30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.566060e-02	ci left: 8.554928e-01	ci right 8.690954e-01	k: 8624	n:10000
Cons ci ratio: 8.236279e-03	ci left: 9.536741e-01	ci right 9.616565e-01	k: 9578	n:10000
KS ci ratio: 3.738618e-02	ci left: 5.137554e-01	ci right 5.334308e-01	k: 5236	n:10000
ARHGAP30   10000 perm   2 sec   (6522 perm/sec)   p_kst 5.236000e-01   p_cons 9.578000e-01   p_joint 8.624000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP30.2_3354_10000_0.5236_0.9578_0.8624.png
                gene_name: ARHGAP30
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 71 percent done.
ARHGEF10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.190577e-02	ci left: 2.207943e-01	ci right 2.373638e-01	k: 2290	n:10000
KS ci ratio: 1.938006e-02	ci left: 7.956756e-01	ci right 8.113472e-01	k: 8036	n:10000
ARHGEF10   10000 perm   2 sec   (6064 perm/sec)   p_kst 8.036000e-01   p_cons 2.290000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000010/ARHGEF10.2_4147_10000_0.8036_0.229_1.png
                gene_name: ARHGEF10
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
ARID2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.977202e-02	ci left: 7.891832e-01	ci right 8.050433e-01	k: 7972	n:10000
KS ci ratio: 2.885738e-02	ci left: 6.390502e-01	ci right 6.578633e-01	k: 6485	n:10000
ARID2   10000 perm   2 sec   (4702 perm/sec)   p_kst 6.485000e-01   p_cons 7.972000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000010/ARID2.2_5592_10000_0.6485_0.7972_1.png
                gene_name: ARID2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000010
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 10 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1705>
Subject: Job 9876937: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1705>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000011> was used as the working directory.
Started at Fri Oct  5 22:25:08 2012
Results reported at Fri Oct  5 22:26:58 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000011.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000011.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 11  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000011.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     97.66 sec.
    Max Memory :      1910 MB
    Max Swap   :      4611 MB

    Max Processes  :         7
    Max Threads    :        55

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
11
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 11
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 11: processing genes 908 - 997
Calculating significance of each gene.
Using projection method.
908	ARID3A	1
909	ARID3B	1
910	ARID3C	1
911	ARID4A	1
In gene ARID4B the following bins exceed PROBCAP:
    PRAD-EJ-5511	categ 6	N = 4031    n = 1	mu =   2.34e-07
912	ARID4B	6.483678e-03
913	ARID5A	7.795690e-03
914	ARID5B	3.561131e-01
915	ARIH1	6.590189e-02
916	ARIH2	1
917	ARL1	1
918	ARL10	1
919	ARL11	1
920	ARL13A	3.740494e-02
921	ARL13B	1
922	ARL14	1
923	ARL15	1
924	ARL16	1
925	ARL2	1
926	ARL2BP	1
927	ARL3	1
928	ARL4A	1
929	ARL4C	1
930	ARL4D	1
931	ARL5A	1
932	ARL5B	1
933	ARL6	1
934	ARL6IP1	1
935	ARL6IP4	1
936	ARL6IP5	1
937	ARL6IP6	1
938	ARL8A	1
939	ARL8B	1
940	ARL9	1
941	ARMC1	1
942	ARMC10	1
943	ARMC2	1
944	ARMC3	1
945	ARMC4	1
946	ARMC5	1
947	ARMC6	1
948	ARMC7	1
949	ARMC8	1
950	ARMC9	1
951	ARMCX1	1
952	ARMCX2	1
953	ARMCX3	1
954	ARMCX5	1
955	ARMCX6	1
956	ARMS2	1
957	ARNT	1.665381e-01
958	ARNT2	1
959	ARNTL	1
960	ARNTL2	1
961	ARPC1A	1
962	ARPC1B	1
963	ARPC2	1
964	ARPC3	1
965	ARPC4	1
966	ARPC5	1
967	ARPC5L	1
968	ARPM1	1
969	ARPP19	1
970	ARPP21	1.488094e-01
971	ARR3	1
972	ARRB1	1
973	ARRB2	1
974	ARRDC1	1
975	ARRDC2	1
976	ARRDC3	3.380172e-02
977	ARRDC4	1
978	ARRDC5	1
979	ARSA	1
980	ARSB	1
981	ARSD	1
982	ARSE	1.680536e-01
983	ARSF	1.814563e-01
984	ARSG	1
985	ARSH	1
986	ARSI	1
987	ARSJ	1
988	ARSK	1
989	ART1	1
990	ART3	1
991	ART4	5.744268e-02
992	ART5	1
993	ARTN	1
994	ARV1	1
995	ARVCF	1
996	AS3MT	1
997	ASAH1	1
Done

Running MutSig 2:
Scatter job 11: processing genes 908 - 997
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ARID4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.570378e-02	ci left: 6.902052e-01	ci right 7.082786e-01	k: 6993	n:10000
KS ci ratio: 2.850386e-02	ci left: 6.446834e-01	ci right 6.634268e-01	k: 6541	n:10000
ARID4B   10000 perm   4 sec   (2246 perm/sec)   p_kst 6.541000e-01   p_cons 6.993000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000011/ARID4B.3_4031_10000_0.6541_0.6993_1.png
                gene_name: ARID4B
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
ARID5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.751436e-02	ci left: 3.952579e-01	ci right 4.145975e-01	k: 4049	n:10000
Cons ci ratio: 1.598226e-02	ci left: 8.504946e-01	ci right 8.642965e-01	k: 8575	n:10000
KS ci ratio: 1.122450e-01	ci left: 1.025665e-01	ci right 1.148625e-01	k: 1086	n:10000
ARID5A   10000 perm   2 sec   (5770 perm/sec)   p_kst 1.086000e-01   p_cons 8.575000e-01   p_joint 4.049000e-01

Joint ci ratio: 3.521150e-02	ci left: 3.758068e-01	ci right 3.893273e-01	k: 7651	n:20000
Cons ci ratio: 1.077012e-02	ci left: 8.640930e-01	ci right 8.734995e-01	k: 17377	n:20000
KS ci ratio: 7.920726e-02	ci left: 1.047622e-01	ci right 1.134519e-01	k: 2181	n:20000
ARID5A   20000 perm   4 sec   (5254 perm/sec)   p_kst 1.090500e-01   p_cons 8.688500e-01   p_joint 3.825500e-01

Outputting figure to mutsig2_images.part000000000011/ARID5A.2_1813_20000_0.10905_0.86885_0.38255.png
                gene_name: ARID5A
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000011
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 11 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1553>
Subject: Job 9876941: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1553>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000012> was used as the working directory.
Started at Fri Oct  5 22:25:24 2012
Results reported at Fri Oct  5 22:27:39 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000012.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000012.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 12  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000012.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    231.49 sec.
    Max Memory :      2229 MB
    Max Swap   :      4693 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
12
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 12
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 12: processing genes 998 - 1088
Calculating significance of each gene.
Using projection method.
998	ASAH2	1
999	ASAM	1
1000/18134 1000	ASAP1	1
1001	ASAP2	1
1002	ASAP3	1
1003	ASB1	1
1004	ASB10	1
1005	ASB11	1
1006	ASB12	1
1007	ASB13	1
1008	ASB14	1
1009	ASB15	1
1010	ASB16	1
1011	ASB17	1
1012	ASB18	1
1013	ASB2	2.831910e-02
1014	ASB3	1
1015	ASB4	1.249621e-01
1016	ASB5	8.094605e-02
1017	ASB6	1
1018	ASB7	1
1019	ASB8	1
1020	ASB9	1
1021	ASCC1	1
1022	ASCC2	1
1023	ASCC3	1.683184e-01
1024	ASCL1	1
1025	ASCL3	1
1026	ASCL4	1
1027	ASF1A	1
1028	ASF1B	1
1029	ASGR1	1
1030	ASGR2	1
In gene ASH1L the following bins exceed PROBCAP:
    PRAD-EJ-5505	categ 6	N = 9003    n = 1	mu =   1.33e-07
1031	ASH1L	9.699106e-03
1032	ASH2L	1
1033	ASIP	1
1034	ASL	1
1035	ASMT	1
1036	ASMTL	1
1037	ASNA1	1
1038	ASNS	1
1039	ASNSD1	1
1040	ASPA	1
1041	ASPDH	1
1042	ASPG	1.387081e-01
1043	ASPH	1
1044	ASPHD1	1
1045	ASPHD2	4.253195e-03
1046	ASPM	4.775946e-01
1047	ASPN	1
1048	ASPRV1	1
1049	ASPSCR1	1
1050	ASRGL1	1
1051	ASS1	1
1052	ASTE1	1
1053	ASTL	1
1054	ASTN1	3.447761e-02
1055	ASTN2	1
1056	ASXL1	1
1057	ASXL2	1
1058	ASXL3	1
1059	ASZ1	1
1060	ATAD1	1
1061	ATAD2	5.754155e-02
1062	ATAD2B	1
1063	ATAD3A	1
1064	ATAD3B	1
1065	ATAD3C	1
1066	ATAD5	1
1067	ATCAY	1
1068	ATE1	1
1069	ATF1	1
1070	ATF2	1
1071	ATF3	1
1072	ATF4	1
1073	ATF5	1
1074	ATF6	1
1075	ATF6B	2.187192e-01
1076	ATF7	1
In gene ATF7IP the following bins exceed PROBCAP:
    PRAD-EJ-5512	categ 6	N = 3869    n = 1	mu =   1.66e-07
1077	ATF7IP	2.356982e-03
1078	ATF7IP2	1
1079	ATG10	2.279650e-02
1080	ATG12	1.875071e-02
1081	ATG16L1	1
1082	ATG16L2	1
1083	ATG2A	1
In gene ATG2B the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 6405    n = 1	mu =   9.08e-07
1084	ATG2B	4.972191e-01
1085	ATG3	1
1086	ATG4A	1
1087	ATG4B	1
1088	ATG4C	9.296260e-02
Done

Running MutSig 2:
Scatter job 12: processing genes 998 - 1088
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ASH1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.899868e-02	ci left: 4.926508e-01	ci right 5.123478e-01	k: 5025	n:10000
Cons ci ratio: 9.113168e-03	ci left: 9.442976e-01	ci right 9.530386e-01	k: 9488	n:10000
KS ci ratio: 7.118065e-02	ci left: 2.243482e-01	ci right 2.410078e-01	k: 2326	n:10000
ASH1L   10000 perm   3 sec   (3030 perm/sec)   p_kst 2.326000e-01   p_cons 9.488000e-01   p_joint 5.025000e-01

Outputting figure to mutsig2_images.part000000000012/ASH1L.4_9003_10000_0.2326_0.9488_0.5025.png
                gene_name: ASH1L
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 14 percent done.
ATF7IP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.928515e-02	ci left: 2.950918e-01	ci right 3.132224e-01	k: 3041	n:10000
Cons ci ratio: 1.308937e-01	ci left: 7.688883e-02	ci right 8.775595e-02	k: 822	n:10000
KS ci ratio: 3.822641e-02	ci left: 5.026508e-01	ci right 5.223419e-01	k: 5125	n:10000
ATF7IP   10000 perm   2 sec   (4712 perm/sec)   p_kst 5.125000e-01   p_cons 8.220000e-02   p_joint 3.041000e-01

Joint ci ratio: 2.839549e-02	ci left: 4.809497e-01	ci right 4.948538e-01	k: 9758	n:20000
Cons ci ratio: 9.283455e-02	ci left: 7.803778e-02	ci right 8.568430e-02	k: 1636	n:20000
KS ci ratio: 2.727112e-02	ci left: 5.011456e-01	ci right 5.150520e-01	k: 10162	n:20000
ATF7IP   20000 perm   5 sec   (4277 perm/sec)   p_kst 5.081000e-01   p_cons 8.180000e-02   p_joint 4.879000e-01

Outputting figure to mutsig2_images.part000000000012/ATF7IP.3_3869_20000_0.5081_0.0818_0.4879.png
                gene_name: ATF7IP
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.082 
      ci_cons_bounds_left: 0.078 
     ci_cons_bounds_right: 0.086 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.49 

Current progress: 29 percent done.
ASB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.715515e-02	ci left: 6.664250e-01	ci right 6.848726e-01	k: 6757	n:10000
KS ci ratio: 5.753719e-03	ci left: 9.759962e-01	ci right 9.817201e-01	k: 9790	n:10000
ASB2   10000 perm   2 sec   (6449 perm/sec)   p_kst 9.790000e-01   p_cons 6.757000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000012/ASB2.2_1796_10000_0.979_0.6757_1.png
                gene_name: ASB2
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
ASCC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.970424e-02	ci left: 6.256770e-01	ci right 6.446442e-01	k: 6352	n:10000
Cons ci ratio: 7.852074e-02	ci left: 1.916074e-01	ci right 2.073681e-01	k: 1994	n:10000
KS ci ratio: 1.779874e-02	ci left: 8.215767e-01	ci right 8.364311e-01	k: 8291	n:10000
ASCC3   10000 perm   2 sec   (4069 perm/sec)   p_kst 8.291000e-01   p_cons 1.994000e-01   p_joint 6.352000e-01

Outputting figure to mutsig2_images.part000000000012/ASCC3.2_6872_10000_0.8291_0.1994_0.6352.png
                gene_name: ASCC3
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.64 

Current progress: 57 percent done.
ASPHD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.178537e-02	ci left: 2.780479e-01	ci right 2.958764e-01	k: 2869	n:10000
KS ci ratio: 1.897407e-02	ci left: 8.023742e-01	ci right 8.178447e-01	k: 8102	n:10000
ASPHD2   10000 perm   1 sec   (7093 perm/sec)   p_kst 8.102000e-01   p_cons 2.869000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000012/ASPHD2.2_1122_10000_0.8102_0.2869_1.png
                gene_name: ASPHD2
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
ASTN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.107050e-02	ci left: 9.209006e-01	ci right 9.312496e-01	k: 9262	n:10000
Cons ci ratio: 2.216112e-02	ci left: 7.492789e-01	ci right 7.661707e-01	k: 7578	n:10000
KS ci ratio: 1.921421e-02	ci left: 7.984155e-01	ci right 8.140057e-01	k: 8063	n:10000
ASTN1   10000 perm   2 sec   (5090 perm/sec)   p_kst 8.063000e-01   p_cons 7.578000e-01   p_joint 9.262000e-01

Outputting figure to mutsig2_images.part000000000012/ASTN1.2_3981_10000_0.8063_0.7578_0.9262.png
                gene_name: ASTN1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 86 percent done.
ATAD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.081627e-02	ci left: 6.083937e-01	ci right 6.275375e-01	k: 6180	n:10000
Cons ci ratio: 2.781424e-02	ci left: 6.557528e-01	ci right 6.743510e-01	k: 6651	n:10000
KS ci ratio: 4.286032e-02	ci left: 4.456034e-01	ci right 4.652226e-01	k: 4554	n:10000
ATAD2   10000 perm   2 sec   (4976 perm/sec)   p_kst 4.554000e-01   p_cons 6.651000e-01   p_joint 6.180000e-01

Outputting figure to mutsig2_images.part000000000012/ATAD2.2_4285_10000_0.4554_0.6651_0.618.png
                gene_name: ATAD2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000012
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 12 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1727>
Subject: Job 9876944: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1727>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000013> was used as the working directory.
Started at Fri Oct  5 22:26:00 2012
Results reported at Fri Oct  5 22:27:46 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000013.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000013.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 13  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000013.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    101.82 sec.
    Max Memory :      1969 MB
    Max Swap   :      4682 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
13
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 13
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 13: processing genes 1089 - 1179
Calculating significance of each gene.
Using projection method.
1089	ATG4D	1
In gene ATG5 the following bins exceed PROBCAP:
    PRAD-EJ-5512	categ 6	N = 856     n = 1	mu =   1.66e-07
1090	ATG5	1.625465e-02
1091	ATG7	1
1092	ATG9A	1
1093	ATG9B	1
1094	ATHL1	1
1095	ATIC	1
1096	ATL1	1
1097	ATL2	3.750797e-02
1098	ATL3	1
1099	ATM	2.575368e-03
1100	ATMIN	1.926120e-01
1101	ATN1	1
1102	ATOH1	1
1103	ATOH7	1
1104	ATOH8	1
1105	ATOX1	1
1106	ATP10A	1
1107	ATP10B	9.526748e-02
1108	ATP10D	1
1109	ATP11A	1
1110	ATP11B	1
1111	ATP11C	1
1112	ATP12A	1
1113	ATP13A1	1
1114	ATP13A2	1
1115	ATP13A3	1
1116	ATP13A4	1
1117	ATP13A5	1
1118	ATP1A1	1
1119	ATP1A2	1
1120	ATP1A3	2.782739e-01
1121	ATP1A4	1
1122	ATP1B1	1
1123	ATP1B2	1
1124	ATP1B3	1
1125	ATP1B4	1
1126	ATP2A1	1
1127	ATP2A2	1
1128	ATP2A3	1
1129	ATP2B1	2.055065e-01
1130	ATP2B2	1
1131	ATP2B3	1
1132	ATP2B4	6.332375e-02
1133	ATP2C1	1
1134	ATP2C2	1
1135	ATP4A	1
1136	ATP4B	1
In gene ATP5A1 the following bins exceed PROBCAP:
    PRAD-CH-5772	categ 6	N = 1710    n = 1	mu =   3.94e-07
1137	ATP5A1	9.403655e-02
1138	ATP5B	1
1139	ATP5C1	1
1140	ATP5D	1
1141	ATP5E	1
1142	ATP5F1	7.522750e-02
1143	ATP5G1	1
1144	ATP5G2	1
1145	ATP5G3	1
1146	ATP5H	1
1147	ATP5I	1
1148	ATP5J	1
1149	ATP5J2	1
1150	ATP5L	1
1151	ATP5L2	1
1152	ATP5O	1
1153	ATP5S	1
1154	ATP5SL	1
1155	ATP6AP1	1
1156	ATP6AP1L	1
1157	ATP6AP2	1
1158	ATP6V0A1	1
1159	ATP6V0A2	1
1160	ATP6V0A4	1
1161	ATP6V0B	1
1162	ATP6V0C	1
1163	ATP6V0D1	1
1164	ATP6V0D2	1
1165	ATP6V0E1	1
1166	ATP6V0E2	1
1167	ATP6V1A	1.833996e-01
1168	ATP6V1B1	1
1169	ATP6V1B2	1
1170	ATP6V1C1	1
1171	ATP6V1C2	7.735257e-02
1172	ATP6V1D	1
1173	ATP6V1E1	1
1174	ATP6V1E2	1
1175	ATP6V1F	1.077269e-02
1176	ATP6V1G1	1
1177	ATP6V1G2	1
1178	ATP6V1G3	1
1179	ATP6V1H	1
Done

Running MutSig 2:
Scatter job 13: processing genes 1089 - 1179
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ATM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.747592e-01	ci left: 4.370078e-02	ci right 5.216506e-02	k: 478	n:10000
Cons ci ratio: 3.113784e-01	ci left: 1.317075e-02	ci right 1.811726e-02	k: 155	n:10000
KS ci ratio: 1.012259e-01	ci left: 1.237605e-01	ci right 1.370557e-01	k: 1303	n:10000
ATM   10000 perm   2 sec   (4223 perm/sec)   p_kst 1.303000e-01   p_cons 1.550000e-02   p_joint 4.780000e-02

Joint ci ratio: 1.978447e-01	ci left: 1.734330e-02	ci right 2.119826e-02	k: 384	n:20000
Cons ci ratio: 2.419888e-01	ci left: 1.138222e-02	ci right 1.456171e-02	k: 258	n:20000
KS ci ratio: 7.124930e-02	ci left: 1.267467e-01	ci right 1.361607e-01	k: 2628	n:20000
ATM   20000 perm   7 sec   (2977 perm/sec)   p_kst 1.314000e-01   p_cons 1.290000e-02   p_joint 1.920000e-02

Joint ci ratio: 1.821674e-01	ci left: 1.381413e-02	ci right 1.661424e-02	k: 455	n:30000
Cons ci ratio: 1.925026e-01	ci left: 1.231996e-02	ci right 1.497546e-02	k: 408	n:30000
KS ci ratio: 5.664267e-02	ci left: 1.337534e-01	ci right 1.415836e-01	k: 4129	n:30000
ATM   30000 perm   10 sec   (3062 perm/sec)   p_kst 1.376333e-01   p_cons 1.360000e-02   p_joint 1.516667e-02

Joint ci ratio: 1.498265e-01	ci left: 1.556318e-02	ci right 1.810766e-02	k: 672	n:40000
Cons ci ratio: 1.689786e-01	ci left: 1.215240e-02	ci right 1.441908e-02	k: 530	n:40000
KS ci ratio: 4.903692e-02	ci left: 1.343618e-01	ci right 1.411409e-01	k: 5509	n:40000
ATM   40000 perm   13 sec   (3176 perm/sec)   p_kst 1.377250e-01   p_cons 1.325000e-02   p_joint 1.680000e-02

Joint ci ratio: 1.483061e-01	ci left: 1.275721e-02	ci right 1.481980e-02	k: 688	n:50000
Cons ci ratio: 1.508804e-01	ci left: 1.231422e-02	ci right 1.434286e-02	k: 665	n:50000
KS ci ratio: 4.390254e-02	ci left: 1.344926e-01	ci right 1.405496e-01	k: 6875	n:50000
ATM   50000 perm   15 sec   (3237 perm/sec)   p_kst 1.375000e-01   p_cons 1.330000e-02   p_joint 1.376000e-02

Joint ci ratio: 1.418570e-01	ci left: 1.167456e-02	ci right 1.347305e-02	k: 753	n:60000
Cons ci ratio: 1.391712e-01	ci left: 1.214110e-02	ci right 1.397311e-02	k: 782	n:60000
KS ci ratio: 4.023642e-02	ci left: 1.338283e-01	ci right 1.393402e-01	k: 8194	n:60000
ATM   60000 perm   18 sec   (3257 perm/sec)   p_kst 1.365667e-01   p_cons 1.303333e-02   p_joint 1.255000e-02

Joint ci ratio: 9.112108e-02	ci left: 2.458223e-02	ci right 2.694302e-02	k: 1802	n:70000
Cons ci ratio: 1.290984e-01	ci left: 1.216013e-02	ci right 1.385202e-02	k: 909	n:70000
KS ci ratio: 3.724232e-02	ci left: 1.340922e-01	ci right 1.391951e-01	k: 9564	n:70000
ATM   70000 perm   21 sec   (3265 perm/sec)   p_kst 1.366286e-01   p_cons 1.298571e-02   p_joint 2.574286e-02

Joint ci ratio: 8.828659e-02	ci left: 2.298717e-02	ci right 2.512253e-02	k: 1923	n:80000
Cons ci ratio: 1.215325e-01	ci left: 1.205675e-02	ci right 1.362887e-02	k: 1026	n:80000
KS ci ratio: 3.483412e-02	ci left: 1.342768e-01	ci right 1.390496e-01	k: 10932	n:80000
ATM   80000 perm   25 sec   (3258 perm/sec)   p_kst 1.366500e-01   p_cons 1.282500e-02   p_joint 2.403750e-02

Joint ci ratio: 8.850148e-02	ci left: 2.038836e-02	ci right 2.228712e-02	k: 1919	n:90000
Cons ci ratio: 1.154134e-01	ci left: 1.192464e-02	ci right 1.339590e-02	k: 1138	n:90000
KS ci ratio: 3.275351e-02	ci left: 1.350466e-01	ci right 1.395546e-01	k: 12356	n:90000
ATM   90000 perm   28 sec   (3247 perm/sec)   p_kst 1.372889e-01   p_cons 1.264444e-02   p_joint 2.132222e-02

Joint ci ratio: 9.112230e-02	ci left: 1.734139e-02	ci right 1.900673e-02	k: 1816	n:100000
Cons ci ratio: 1.097791e-01	ci left: 1.189839e-02	ci right 1.329010e-02	k: 1258	n:100000
KS ci ratio: 3.115034e-02	ci left: 1.345764e-01	ci right 1.388447e-01	k: 13670	n:100000
ATM   100000 perm   31 sec   (3189 perm/sec)   p_kst 1.367000e-01   p_cons 1.258000e-02   p_joint 1.816000e-02

Joint ci ratio: 1.010689e-01	ci left: 1.280860e-02	ci right 1.418086e-02	k: 1483	n:110000
Cons ci ratio: 1.049354e-01	ci left: 1.186948e-02	ci right 1.319277e-02	k: 1377	n:110000
KS ci ratio: 2.969509e-02	ci left: 1.347201e-01	ci right 1.387900e-01	k: 15042	n:110000
ATM   110000 perm   35 sec   (3175 perm/sec)   p_kst 1.367455e-01   p_cons 1.251818e-02   p_joint 1.348182e-02

Joint ci ratio: 9.688483e-02	ci left: 1.280587e-02	ci right 1.411780e-02	k: 1614	n:120000
Cons ci ratio: 1.002748e-01	ci left: 1.194404e-02	ci right 1.321301e-02	k: 1508	n:120000
KS ci ratio: 2.844650e-02	ci left: 1.346781e-01	ci right 1.385728e-01	k: 16394	n:120000
ATM   120000 perm   38 sec   (3157 perm/sec)   p_kst 1.366167e-01   p_cons 1.256667e-02   p_joint 1.345000e-02

Joint ci ratio: 9.405827e-02	ci left: 1.256408e-02	ci right 1.381162e-02	k: 1713	n:130000
Cons ci ratio: 9.642310e-02	ci left: 1.194815e-02	ci right 1.316604e-02	k: 1631	n:130000
KS ci ratio: 2.736734e-02	ci left: 1.344392e-01	ci right 1.381771e-01	k: 17719	n:130000
ATM   130000 perm   42 sec   (3128 perm/sec)   p_kst 1.363000e-01   p_cons 1.254615e-02   p_joint 1.317692e-02

Outputting figure to mutsig2_images.part000000000013/ATM.5_9419_130000_0.1363_0.012546_0.013177.png
                gene_name: ATM
               theta_stop: 0.096 
                    nperm: 130000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.013 
      ci_cons_bounds_left: 0.012 
     ci_cons_bounds_right: 0.013 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.014 

Current progress: 33 percent done.
ATP10B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.048516e-02	ci left: 9.282324e-01	ci right 9.381134e-01	k: 9333	n:10000
Cons ci ratio: 3.749121e-02	ci left: 5.123546e-01	ci right 5.320325e-01	k: 5222	n:10000
KS ci ratio: 3.494759e-02	ci left: 5.472988e-01	ci right 5.668679e-01	k: 5571	n:10000
ATP10B   10000 perm   2 sec   (6123 perm/sec)   p_kst 5.571000e-01   p_cons 5.222000e-01   p_joint 9.333000e-01

Outputting figure to mutsig2_images.part000000000013/ATP10B.2_4474_10000_0.5571_0.5222_0.9333.png
                gene_name: ATP10B
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 67 percent done.
ATP2B4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.959722e-02	ci left: 3.748505e-01	ci right 3.940169e-01	k: 3844	n:10000
KS ci ratio: 5.196217e-02	ci left: 3.531686e-01	ci right 3.721115e-01	k: 3626	n:10000
ATP2B4   10000 perm   2 sec   (6127 perm/sec)   p_kst 3.626000e-01   p_cons 3.844000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000013/ATP2B4.2_3880_10000_0.3626_0.3844_1.png
                gene_name: ATP2B4
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000013
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 13 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1652>
Subject: Job 9876946: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1652>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000014> was used as the working directory.
Started at Fri Oct  5 22:26:23 2012
Results reported at Fri Oct  5 22:28:34 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000014.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000014.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 14  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000014.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    138.08 sec.
    Max Memory :      2063 MB
    Max Swap   :      4637 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
14
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 14
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 14: processing genes 1180 - 1269
Calculating significance of each gene.
Using projection method.
1180	ATP7A	1
1181	ATP7B	4.095921e-01
1182	ATP8A1	1
1183	ATP8A2	1
1184	ATP8B1	1
1185	ATP8B2	1
1186	ATP8B3	1
1187	ATP8B4	1.167193e-02
1188	ATP9A	1
1189	ATP9B	1
1190	ATPAF1	1
1191	ATPAF2	1
1192	ATPBD4	1
1193	ATPIF1	1
1194	ATR	1
1195	ATRIP	1.829184e-01
1196	ATRN	2.405096e-01
1197	ATRNL1	1
1198	ATRX	1.444955e-01
1199	ATXN1	1
1200	ATXN10	1
1201	ATXN2	1
1202	ATXN2L	1
1203	ATXN3	1
1204	ATXN3L	1
1205	ATXN7	1
1206	ATXN7L2	1
1207	ATXN7L3	1
1208	AUH	1
1209	AUP1	1
1210	AURKA	1
1211	AURKAIP1	1
1212	AURKB	1
1213	AURKC	1
1214	AUTS2	2.578363e-01
1215	AVEN	1
1216	AVIL	1
1217	AVL9	1
1218	AVP	1
1219	AVPI1	1
In gene AVPR1A the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 1265    n = 1	mu =   9.08e-07
1220	AVPR1A	1.427626e-01
1221	AVPR1B	1.011695e-01
1222	AVPR2	1
1223	AWAT1	1
1224	AWAT2	1
1225	AXIN1	1
1226	AXIN2	1
1227	AXL	1.962126e-01
1228	AZGP1	1
1229	AZI1	1
1230	AZI2	1
1231	AZIN1	1
1232	AZU1	1
1233	B2M	1
1234	B3GALNT1	2.844396e-02
1235	B3GALNT2	1
1236	B3GALT1	1
1237	B3GALT2	1
1238	B3GALT4	1
1239	B3GALT5	8.513446e-02
1240	B3GALTL	1
1241	B3GAT1	1
1242	B3GAT2	1
1243	B3GAT3	4.868370e-03
1244	B3GNT1	1
1245	B3GNT2	1
1246	B3GNT3	1.561064e-01
1247	B3GNT4	6.165920e-04
1248	B3GNT5	1
1249	B3GNT6	1
1250	B3GNT7	1
1251	B3GNT8	1
1252	B3GNT9	1
1253	B3GNTL1	1
1254	B4GALNT1	1.314959e-01
1255	B4GALNT2	1
1256	B4GALNT3	2.925462e-01
1257	B4GALNT4	1
1258	B4GALT1	1
1259	B4GALT2	1.017423e-01
1260	B4GALT3	1
1261	B4GALT4	1
1262	B4GALT5	1
1263	B4GALT6	1
1264	B4GALT7	1
1265	B9D1	1
1266	B9D2	1
1267	BAALC	1
1268	BAAT	1
1269	BACE1	1.601023e-01
Done

Running MutSig 2:
Scatter job 14: processing genes 1180 - 1269
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ATP8B4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.921521e-02	ci left: 2.955875e-01	ci right 3.137265e-01	k: 3046	n:10000
Cons ci ratio: 3.338123e-02	ci left: 5.698531e-01	ci right 5.893005e-01	k: 5796	n:10000
KS ci ratio: 1.330186e-01	ci left: 7.456177e-02	ci right 8.528446e-02	k: 798	n:10000
ATP8B4   10000 perm   2 sec   (4783 perm/sec)   p_kst 7.980000e-02   p_cons 5.796000e-01   p_joint 3.046000e-01

Joint ci ratio: 3.703454e-02	ci left: 3.523476e-01	ci right 3.656934e-01	k: 7180	n:20000
Cons ci ratio: 2.350150e-02	ci left: 5.748773e-01	ci right 5.885990e-01	k: 11635	n:20000
KS ci ratio: 9.333221e-02	ci left: 7.725487e-02	ci right 8.486745e-02	k: 1620	n:20000
ATP8B4   20000 perm   7 sec   (2985 perm/sec)   p_kst 8.100000e-02   p_cons 5.817500e-01   p_joint 3.590000e-01

Outputting figure to mutsig2_images.part000000000014/ATP8B4.2_3687_20000_0.081_0.58175_0.359.png
                gene_name: ATP8B4
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 25 percent done.
ATRX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.818818e-02	ci left: 5.031509e-01	ci right 5.228415e-01	k: 5130	n:10000
Cons ci ratio: 5.851007e-02	ci left: 3.006442e-01	ci right 3.188667e-01	k: 3097	n:10000
KS ci ratio: 2.081274e-02	ci left: 7.718513e-01	ci right 7.881853e-01	k: 7801	n:10000
ATRX   10000 perm   2 sec   (4079 perm/sec)   p_kst 7.801000e-01   p_cons 3.097000e-01   p_joint 5.130000e-01

Outputting figure to mutsig2_images.part000000000014/ATRX.2_7619_10000_0.7801_0.3097_0.513.png
                gene_name: ATRX
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 50 percent done.
B3GAT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.071196e-02	ci left: 6.100009e-01	ci right 6.291294e-01	k: 6196	n:10000
KS ci ratio: 1.014468e-02	ci left: 9.323699e-01	ci right 9.419735e-01	k: 9373	n:10000
B3GAT3   10000 perm   2 sec   (5820 perm/sec)   p_kst 9.373000e-01   p_cons 6.196000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000014/B3GAT3.2_1028_10000_0.9373_0.6196_1.png
                gene_name: B3GAT3
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
B3GNT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.818818e-02	ci left: 5.031509e-01	ci right 5.228415e-01	k: 5130	n:10000
Cons ci ratio: 4.017026e-02	ci left: 4.778579e-01	ci right 4.975492e-01	k: 4877	n:10000
KS ci ratio: 4.844356e-02	ci left: 3.859978e-01	ci right 4.052631e-01	k: 3956	n:10000
B3GNT4   10000 perm   3 sec   (3870 perm/sec)   p_kst 3.956000e-01   p_cons 4.877000e-01   p_joint 5.130000e-01

Outputting figure to mutsig2_images.part000000000014/B3GNT4.2_1145_10000_0.3956_0.4877_0.513.png
                gene_name: B3GNT4
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000014
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 14 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1645>
Subject: Job 9876949: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1645>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000015> was used as the working directory.
Started at Fri Oct  5 22:26:23 2012
Results reported at Fri Oct  5 22:28:38 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000015.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000015.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 15  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000015.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    123.47 sec.
    Max Memory :      2199 MB
    Max Swap   :      4707 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
15
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 15
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 15: processing genes 1270 - 1360
Calculating significance of each gene.
Using projection method.
1270	BACE2	1
1271	BACH1	1
1272	BACH2	1
1273	BAD	1
1274	BAG1	1
1275	BAG2	1
1276	BAG3	1
1277	BAG4	1
1278	BAG5	1
1279	BAGE	1
1280	BAGE2	1
1281	BAGE3	1
1282	BAGE4	1
1283	BAGE5	1
In gene BAHCC1 the following bins exceed PROBCAP:
    PRAD-CH-5792	categ 6	N = 3560    n = 1	mu =   2.67e-07
1284	BAHCC1	8.432428e-03
1285	BAHD1	1
1286	BAI1	1.401992e-01
1287	BAI2	4.332344e-01
1288	BAI3	5.983979e-02
1289	BAIAP2	1
1290	BAIAP2L1	1
1291	BAIAP2L2	1
1292	BAIAP3	1
1293	BAK1	1
1294	BAMBI	1
1295	BANF1	1
1296	BANF2	3.792357e-04
1297	BANK1	1
1298	BANP	4.320924e-02
1299	BAP1	1
1300	BARD1	1
1301	BARHL1	1
1302	BARHL2	1
1303	BARX1	1
1304	BARX2	7.842926e-03
1305	BASP1	1
1306	BAT1	1
1307	BAT2	2.735977e-01
1308	BAT2L1	1
1309	BAT2L2	1
1310	BAT3	1
1311	BAT4	1
1312	BAT5	1
1313	BATF	1
1314	BATF2	1
1315	BATF3	1
1316	BAX	1
1317	BAZ1A	1
1318	BAZ1B	1
1319	BAZ2A	1
1320	BAZ2B	2.952454e-01
1321	BBC3	1
1322	BBOX1	1
1323	BBS1	1
1324	BBS10	1.145258e-01
1325	BBS12	1.898339e-01
1326	BBS2	1
1327	BBS4	1.054158e-01
1328	BBS5	1
1329	BBS7	1
1330	BBS9	5.049677e-04
1331	BBX	1
1332	BCAM	1
1333	BCAN	2.697899e-01
1334	BCAP29	1
1335	BCAP31	1
1336	BCAR1	1
1337	BCAR3	1
1338	BCAS1	1.120382e-01
1339	BCAS2	1
1340	BCAS3	1
1341	BCAS4	1
1342	BCAT1	1
1343	BCAT2	1
1344	BCCIP	1
1345	BCDIN3D	1
1346	BCHE	1
1347	BCKDHA	1.662147e-01
1348	BCKDHB	1
1349	BCKDK	1
1350	BCL10	1
1351	BCL11A	3.099351e-02
1352	BCL11B	1
1353	BCL2	1
1354	BCL2A1	1
1355	BCL2L1	1
1356	BCL2L10	1
1357	BCL2L11	1
1358	BCL2L12	1
1359	BCL2L13	1
1360	BCL2L14	1
Done

Running MutSig 2:
Scatter job 15: processing genes 1270 - 1360
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
BAHCC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.734125e-02	ci left: 5.143558e-01	ci right 5.340301e-01	k: 5242	n:10000
Cons ci ratio: 7.468054e-02	ci left: 2.078695e-01	ci right 2.240963e-01	k: 2159	n:10000
KS ci ratio: 2.437784e-02	ci left: 7.121969e-01	ci right 7.298742e-01	k: 7211	n:10000
BAHCC1   10000 perm   3 sec   (3838 perm/sec)   p_kst 7.211000e-01   p_cons 2.159000e-01   p_joint 5.242000e-01

Outputting figure to mutsig2_images.part000000000015/BAHCC1.3_7770_10000_0.7211_0.2159_0.5242.png
                gene_name: BAHCC1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 20 percent done.
BBS9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.168713e-02	ci left: 4.593790e-01	ci right 4.790390e-01	k: 4692	n:10000
Cons ci ratio: 3.378007e-02	ci left: 5.640372e-01	ci right 5.835198e-01	k: 5738	n:10000
KS ci ratio: 4.834243e-02	ci left: 3.869933e-01	ci right 4.062670e-01	k: 3966	n:10000
BBS9   10000 perm   2 sec   (5117 perm/sec)   p_kst 3.966000e-01   p_cons 5.738000e-01   p_joint 4.692000e-01

Outputting figure to mutsig2_images.part000000000015/BBS9.3_2752_10000_0.3966_0.5738_0.4692.png
                gene_name: BBS9
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 40 percent done.
BAI3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.952147e-02	ci left: 1.275764e-01	ci right 1.410375e-01	k: 1342	n:10000
Cons ci ratio: 2.385065e-01	ci left: 2.315796e-02	ci right 2.952203e-02	k: 262	n:10000
KS ci ratio: 5.649311e-02	ci left: 3.157228e-01	ci right 3.341792e-01	k: 3249	n:10000
BAI3   10000 perm   2 sec   (4768 perm/sec)   p_kst 3.249000e-01   p_cons 2.620000e-02   p_joint 1.342000e-01

Joint ci ratio: 6.191657e-02	ci left: 1.617558e-01	ci right 1.721412e-01	k: 3338	n:20000
Cons ci ratio: 1.654508e-01	ci left: 2.503753e-02	ci right 2.960129e-02	k: 545	n:20000
KS ci ratio: 4.016622e-02	ci left: 3.160727e-01	ci right 3.290789e-01	k: 6451	n:20000
BAI3   20000 perm   5 sec   (4300 perm/sec)   p_kst 3.225500e-01   p_cons 2.725000e-02   p_joint 1.669000e-01

Joint ci ratio: 5.735323e-02	ci left: 1.308556e-01	ci right 1.386153e-01	k: 4041	n:30000
Cons ci ratio: 1.364677e-01	ci left: 2.493733e-02	ci right 2.862175e-02	k: 802	n:30000
KS ci ratio: 3.281561e-02	ci left: 3.170122e-01	ci right 3.276222e-01	k: 9669	n:30000
BAI3   30000 perm   7 sec   (4117 perm/sec)   p_kst 3.223000e-01   p_cons 2.673333e-02   p_joint 1.347000e-01

Joint ci ratio: 4.726086e-02	ci left: 1.432707e-01	ci right 1.502306e-01	k: 5869	n:40000
Cons ci ratio: 1.171031e-01	ci left: 2.565209e-02	ci right 2.886704e-02	k: 1089	n:40000
KS ci ratio: 2.860779e-02	ci left: 3.148565e-01	ci right 3.240197e-01	k: 12777	n:40000
BAI3   40000 perm   10 sec   (3985 perm/sec)   p_kst 3.194250e-01   p_cons 2.722500e-02   p_joint 1.467250e-01

Joint ci ratio: 4.154251e-02	ci left: 1.480107e-01	ci right 1.543098e-01	k: 7557	n:50000
Cons ci ratio: 1.047602e-01	ci left: 2.581119e-02	ci right 2.868405e-02	k: 1361	n:50000
KS ci ratio: 2.561292e-02	ci left: 3.149152e-01	ci right 3.231058e-01	k: 15950	n:50000
BAI3   50000 perm   13 sec   (3906 perm/sec)   p_kst 3.190000e-01   p_cons 2.722000e-02   p_joint 1.511400e-01

Joint ci ratio: 3.548458e-02	ci left: 1.660091e-01	ci right 1.720229e-01	k: 10140	n:60000
Cons ci ratio: 9.463732e-02	ci left: 2.648282e-02	ci right 2.912979e-02	k: 1667	n:60000
KS ci ratio: 2.331705e-02	ci left: 3.164673e-01	ci right 3.239501e-01	k: 19212	n:60000
BAI3   60000 perm   16 sec   (3843 perm/sec)   p_kst 3.202000e-01   p_cons 2.778333e-02   p_joint 1.690000e-01

Outputting figure to mutsig2_images.part000000000015/BAI3.2_4689_60000_0.3202_0.027783_0.169.png
                gene_name: BAI3
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.17 

Current progress: 60 percent done.
BANF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.704001e-02	ci left: 8.337856e-01	ci right 8.482152e-01	k: 8411	n:10000
KS ci ratio: 1.145409e-02	ci left: 9.159518e-01	ci right 9.266012e-01	k: 9214	n:10000
BANF2   10000 perm   2 sec   (6624 perm/sec)   p_kst 9.214000e-01   p_cons 8.411000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000015/BANF2.2_306_10000_0.9214_0.8411_1.png
                gene_name: BANF2
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
BCL11A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.091734e-03	ci left: 9.808076e-01	ci right 9.859052e-01	k: 9835	n:10000
Cons ci ratio: 1.742078e-02	ci left: 8.276794e-01	ci right 8.423249e-01	k: 8351	n:10000
KS ci ratio: 2.179286e-02	ci left: 7.554502e-01	ci right 7.721959e-01	k: 7639	n:10000
BCL11A   10000 perm   2 sec   (5661 perm/sec)   p_kst 7.639000e-01   p_cons 8.351000e-01   p_joint 9.835000e-01

Outputting figure to mutsig2_images.part000000000015/BCL11A.2_2630_10000_0.7639_0.8351_0.9835.png
                gene_name: BCL11A
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000015
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 15 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1730>
Subject: Job 9876951: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1730>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000016> was used as the working directory.
Started at Fri Oct  5 22:26:23 2012
Results reported at Fri Oct  5 22:40:44 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000016.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000016.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 16  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000016.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    868.81 sec.
    Max Memory :      2077 MB
    Max Swap   :      4716 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
16
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 16
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 16: processing genes 1361 - 1451
Calculating significance of each gene.
Using projection method.
1361	BCL2L15	1
1362	BCL2L2	1
1363	BCL3	1
1364	BCL6	6.235960e-04
1365	BCL6B	1.986250e-01
1366	BCL7A	1
1367	BCL7B	1
1368	BCL7C	1
1369	BCL9	3.389246e-01
1370	BCL9L	1
1371	BCLAF1	1
1372	BCMO1	4.564863e-03
1373	BCO2	1
1374	BCOR	1
1375	BCORL1	3.127215e-01
1376	BCR	1
1377	BCS1L	1
1378	BDH1	1
1379	BDH2	1
1380	BDKRB1	1
1381	BDKRB2	1
1382	BDNF	1
1383	BDP1	4.962910e-01
1384	BECN1	1
1385	BEGAIN	1
1386	BEND2	1
1387	BEND3	1
1388	BEND4	1
In gene BEND5 the following bins exceed PROBCAP:
    PRAD-G9-6371	categ 6	N = 867     n = 1	mu =   1.34e-07
1389	BEND5	1.156967e-02
1390	BEND6	4.472851e-02
1391	BEND7	1
1392	BEST1	1
1393	BEST2	1
1394	BEST3	1
1395	BEST4	1
1396	BET1	3.804540e-02
1397	BET1L	1
1398	BEX1	1
1399	BEX2	1
1400	BEX4	1
1401	BEX5	1
1402	BFAR	1
1403	BFSP1	1.586064e-01
1404	BFSP2	1
1405	BGLAP	1
1406	BGN	1
1407	BHLHB9	1
1408	BHLHE22	1
1409	BHLHE23	1
1410	BHLHE40	1
1411	BHLHE41	1
1412	BHMT	1
1413	BHMT2	1
1414	BICC1	1
1415	BICD1	1
1416	BICD2	1
1417	BID	1
1418	BIK	1
1419	BIN1	1
1420	BIN2	4.255900e-02
1421	BIN3	1
1422	BIRC2	1
1423	BIRC3	1
1424	BIRC5	1
1425	BIRC6	6.493256e-01
1426	BIRC7	1
1427	BIRC8	1
1428	BIVM	1
1429	BLCAP	1
1430	BLID	1
1431	BLK	1
1432	BLM	1
1433	BLMH	1.419759e-01
1434	BLNK	1
1435	BLOC1S1	1
1436	BLOC1S2	1
1437	BLOC1S3	1
1438	BLVRA	1
1439	BLVRB	1
1440	BLZF1	1
1441	BMF	1
1442	BMI1	1
1443	BMP1	1
1444	BMP10	1
1445	BMP15	1
1446	BMP2	1
In gene BMP2K the following bins exceed PROBCAP:
    PRAD-EJ-5512	categ 6	N = 3406    n = 1	mu =   1.66e-07
1447	BMP2K	1.538866e-02
1448	BMP3	9.136445e-02
1449	BMP4	5.871487e-02
1450	BMP5	1
1451	BMP6	6.493596e-02
Done

Running MutSig 2:
Scatter job 16: processing genes 1361 - 1451
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
BCL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.850220e-02	ci left: 1.566932e-01	ci right 1.713031e-01	k: 1639	n:10000
Cons ci ratio: 1.124744e-02	ci left: 9.186317e-01	ci right 9.291198e-01	k: 9240	n:10000
KS ci ratio: 1.761150e-01	ci left: 4.303019e-02	ci right 5.143610e-02	k: 471	n:10000
BCL6   10000 perm   2 sec   (5098 perm/sec)   p_kst 4.710000e-02   p_cons 9.240000e-01   p_joint 1.639000e-01

Joint ci ratio: 6.063483e-02	ci left: 1.675831e-01	ci right 1.781122e-01	k: 3456	n:20000
Cons ci ratio: 7.530406e-03	ci left: 9.277063e-01	ci right 9.347677e-01	k: 18626	n:20000
KS ci ratio: 1.263002e-01	ci left: 4.304094e-02	ci right 4.889198e-02	k: 918	n:20000
BCL6   20000 perm   6 sec   (3543 perm/sec)   p_kst 4.590000e-02   p_cons 9.313000e-01   p_joint 1.728000e-01

Joint ci ratio: 7.161540e-02	ci left: 8.753895e-02	ci right 9.407388e-02	k: 2723	n:30000
Cons ci ratio: 6.128783e-03	ci left: 9.287868e-01	ci right 9.345293e-01	k: 27951	n:30000
KS ci ratio: 1.056600e-01	ci left: 4.154431e-02	ci right 4.621121e-02	k: 1315	n:30000
BCL6   30000 perm   8 sec   (3986 perm/sec)   p_kst 4.383333e-02   p_cons 9.317000e-01   p_joint 9.076667e-02

Joint ci ratio: 6.459731e-02	ci left: 8.157036e-02	ci right 8.704017e-02	k: 3371	n:40000
Cons ci ratio: 5.280300e-03	ci left: 9.298448e-01	ci right 9.347922e-01	k: 37294	n:40000
KS ci ratio: 9.215654e-02	ci left: 4.127725e-02	ci right 4.528940e-02	k: 1730	n:40000
BCL6   40000 perm   9 sec   (4225 perm/sec)   p_kst 4.325000e-02   p_cons 9.323500e-01   p_joint 8.427500e-02

Outputting figure to mutsig2_images.part000000000016/BCL6.3_2153_40000_0.04325_0.93235_0.084275.png
                gene_name: BCL6
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.084 
     ci_joint_bounds_left: 0.082 
    ci_joint_bounds_right: 0.087 

Current progress: 33 percent done.
BCMO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.984102e-01	ci left: 1.067132e-03	ci right 2.843290e-03	k: 18	n:10000
Cons ci ratio: 9.397593e-02	ci left: 1.411914e-01	ci right 1.552142e-01	k: 1481	n:10000
KS ci ratio: 1.385306e+00	ci left: 2.814811e-04	ci right 1.441732e-03	k: 7	n:10000
BCMO1   10000 perm   1 sec   (7456 perm/sec)   p_kst 7.000000e-04   p_cons 1.481000e-01   p_joint 1.800000e-03

Joint ci ratio: 1.047271e+00	ci left: 3.461416e-04	ci right 1.111263e-03	k: 13	n:20000
Cons ci ratio: 6.619015e-02	ci left: 1.442392e-01	ci right 1.541631e-01	k: 2983	n:20000
KS ci ratio: 1.011735e+00	ci left: 3.827477e-04	ci right 1.174202e-03	k: 14	n:20000
BCMO1   20000 perm   3 sec   (6635 perm/sec)   p_kst 7.000000e-04   p_cons 1.491500e-01   p_joint 6.500000e-04

Joint ci ratio: 8.354264e-01	ci left: 4.333616e-04	ci right 1.069826e-03	k: 21	n:30000
Cons ci ratio: 5.432277e-02	ci left: 1.438675e-01	ci right 1.519342e-01	k: 4436	n:30000
KS ci ratio: 7.836602e-01	ci left: 5.126402e-04	ci right 1.190104e-03	k: 24	n:30000
BCMO1   30000 perm   5 sec   (6316 perm/sec)   p_kst 8.000000e-04   p_cons 1.478667e-01   p_joint 7.000000e-04

Joint ci ratio: 5.234587e-01	ci left: 1.036001e-03	ci right 1.789380e-03	k: 55	n:40000
Cons ci ratio: 4.704969e-02	ci left: 1.443847e-01	ci right 1.513665e-01	k: 5914	n:40000
KS ci ratio: 6.623027e-01	ci left: 5.887193e-04	ci right 1.187589e-03	k: 34	n:40000
BCMO1   40000 perm   7 sec   (6093 perm/sec)   p_kst 8.500000e-04   p_cons 1.478500e-01   p_joint 1.375000e-03

Joint ci ratio: 3.250627e-01	ci left: 2.429353e-03	ci right 3.389804e-03	k: 144	n:50000
Cons ci ratio: 4.203507e-02	ci left: 1.450367e-01	ci right 1.512842e-01	k: 7407	n:50000
KS ci ratio: 5.777008e-01	ci left: 6.565396e-04	ci right 1.204088e-03	k: 45	n:50000
BCMO1   50000 perm   8 sec   (5922 perm/sec)   p_kst 9.000000e-04   p_cons 1.481400e-01   p_joint 2.880000e-03

Joint ci ratio: 3.936464e-01	ci left: 1.326212e-03	ci right 1.990155e-03	k: 98	n:60000
Cons ci ratio: 3.827564e-02	ci left: 1.459445e-01	ci right 1.516562e-01	k: 8927	n:60000
KS ci ratio: 5.486719e-01	ci left: 6.185774e-04	ci right 1.098500e-03	k: 50	n:60000
BCMO1   60000 perm   10 sec   (5776 perm/sec)   p_kst 8.333333e-04   p_cons 1.487833e-01   p_joint 1.633333e-03

Joint ci ratio: 3.734609e-01	ci left: 1.278745e-03	ci right 1.878076e-03	k: 109	n:70000
Cons ci ratio: 3.526551e-02	ci left: 1.473764e-01	ci right 1.526812e-01	k: 10501	n:70000
KS ci ratio: 5.283612e-01	ci left: 5.795724e-04	ci right 1.006429e-03	k: 54	n:70000
BCMO1   70000 perm   12 sec   (5640 perm/sec)   p_kst 7.714286e-04   p_cons 1.500143e-01   p_joint 1.557143e-03

Joint ci ratio: 3.396223e-01	ci left: 1.380719e-03	ci right 1.956389e-03	k: 132	n:80000
Cons ci ratio: 3.298512e-02	ci left: 1.475694e-01	ci right 1.525310e-01	k: 12003	n:80000
KS ci ratio: 4.823166e-01	ci left: 6.271246e-04	ci right 1.035482e-03	k: 65	n:80000
BCMO1   80000 perm   15 sec   (5479 perm/sec)   p_kst 8.125000e-04   p_cons 1.500375e-01   p_joint 1.650000e-03

Joint ci ratio: 2.804112e-01	ci left: 1.863151e-03	ci right 2.480750e-03	k: 194	n:90000
Cons ci ratio: 3.119454e-02	ci left: 1.469333e-01	ci right 1.516005e-01	k: 13433	n:90000
KS ci ratio: 4.465318e-01	ci left: 6.653821e-04	ci right 1.056836e-03	k: 76	n:90000
BCMO1   90000 perm   17 sec   (5381 perm/sec)   p_kst 8.444444e-04   p_cons 1.492556e-01   p_joint 2.155556e-03

Joint ci ratio: 2.491142e-01	ci left: 2.162481e-03	ci right 2.786935e-03	k: 246	n:100000
Cons ci ratio: 2.957938e-02	ci left: 1.471759e-01	ci right 1.516045e-01	k: 14938	n:100000
KS ci ratio: 3.998892e-01	ci left: 7.686726e-04	ci right 1.161203e-03	k: 95	n:100000
BCMO1   100000 perm   19 sec   (5282 perm/sec)   p_kst 9.500000e-04   p_cons 1.493800e-01   p_joint 2.460000e-03

Joint ci ratio: 2.418887e-01	ci left: 2.093859e-03	ci right 2.678327e-03	k: 261	n:110000
Cons ci ratio: 2.826140e-02	ci left: 1.467558e-01	ci right 1.509718e-01	k: 16374	n:110000
KS ci ratio: 3.702149e-01	ci left: 8.301917e-04	ci right 1.215080e-03	k: 111	n:110000
BCMO1   110000 perm   21 sec   (5191 perm/sec)   p_kst 1.009091e-03   p_cons 1.488545e-01   p_joint 2.372727e-03

Joint ci ratio: 2.323328e-01	ci left: 2.091816e-03	ci right 2.649336e-03	k: 283	n:120000
Cons ci ratio: 2.704635e-02	ci left: 1.469565e-01	ci right 1.509939e-01	k: 17876	n:120000
KS ci ratio: 3.576649e-01	ci left: 8.215801e-04	ci right 1.186561e-03	k: 119	n:120000
BCMO1   120000 perm   24 sec   (5101 perm/sec)   p_kst 9.916667e-04   p_cons 1.489667e-01   p_joint 2.358333e-03

Joint ci ratio: 2.213038e-01	ci left: 2.141321e-03	ci right 2.681257e-03	k: 312	n:130000
Cons ci ratio: 2.599457e-02	ci left: 1.469459e-01	ci right 1.508236e-01	k: 19354	n:130000
KS ci ratio: 3.397319e-01	ci left: 8.496311e-04	ci right 1.204003e-03	k: 132	n:130000
BCMO1   130000 perm   26 sec   (5013 perm/sec)   p_kst 1.015385e-03   p_cons 1.488769e-01   p_joint 2.400000e-03

Joint ci ratio: 2.098720e-01	ci left: 2.224890e-03	ci right 2.753195e-03	k: 347	n:140000
Cons ci ratio: 2.506938e-02	ci left: 1.468116e-01	ci right 1.505458e-01	k: 20814	n:140000
KS ci ratio: 3.231452e-01	ci left: 8.806295e-04	ci right 1.226286e-03	k: 146	n:140000
BCMO1   140000 perm   28 sec   (4919 perm/sec)   p_kst 1.042857e-03   p_cons 1.486714e-01   p_joint 2.478571e-03

Joint ci ratio: 2.189001e-01	ci left: 1.899879e-03	ci right 2.373029e-03	k: 319	n:150000
Cons ci ratio: 2.421218e-02	ci left: 1.469494e-01	ci right 1.505575e-01	k: 22312	n:150000
KS ci ratio: 3.126853e-01	ci left: 8.832698e-04	ci right 1.216501e-03	k: 156	n:150000
BCMO1   150000 perm   31 sec   (4832 perm/sec)   p_kst 1.040000e-03   p_cons 1.487467e-01   p_joint 2.126667e-03

Joint ci ratio: 2.096032e-01	ci left: 1.952671e-03	ci right 2.415664e-03	k: 348	n:160000
Cons ci ratio: 2.344828e-02	ci left: 1.469537e-01	ci right 1.504466e-01	k: 23791	n:160000
KS ci ratio: 2.987356e-01	ci left: 9.146304e-04	ci right 1.241382e-03	k: 171	n:160000
BCMO1   160000 perm   34 sec   (4747 perm/sec)   p_kst 1.068750e-03   p_cons 1.486938e-01   p_joint 2.175000e-03

Joint ci ratio: 2.044007e-01	ci left: 1.938201e-03	ci right 2.384932e-03	k: 366	n:170000
Cons ci ratio: 2.275505e-02	ci left: 1.469298e-01	ci right 1.503175e-01	k: 25265	n:170000
KS ci ratio: 2.888290e-01	ci left: 9.262174e-04	ci right 1.244133e-03	k: 183	n:170000
BCMO1   170000 perm   36 sec   (4670 perm/sec)   p_kst 1.076471e-03   p_cons 1.486176e-01   p_joint 2.152941e-03

Joint ci ratio: 1.823382e-01	ci left: 2.327584e-03	ci right 2.799775e-03	k: 460	n:180000
Cons ci ratio: 2.208691e-02	ci left: 1.472860e-01	ci right 1.505809e-01	k: 26807	n:180000
KS ci ratio: 2.742986e-01	ci left: 9.780355e-04	ci right 1.293941e-03	k: 203	n:180000
BCMO1   180000 perm   39 sec   (4594 perm/sec)   p_kst 1.127778e-03   p_cons 1.489278e-01   p_joint 2.555556e-03

Joint ci ratio: 1.768586e-01	ci left: 2.350853e-03	ci right 2.811901e-03	k: 489	n:190000
Cons ci ratio: 2.149618e-02	ci left: 1.473492e-01	ci right 1.505563e-01	k: 28300	n:190000
KS ci ratio: 2.653428e-01	ci left: 9.952622e-04	ci right 1.304493e-03	k: 217	n:190000
BCMO1   190000 perm   42 sec   (4524 perm/sec)   p_kst 1.142105e-03   p_cons 1.489474e-01   p_joint 2.573684e-03

Joint ci ratio: 1.718451e-01	ci left: 2.371986e-03	ci right 2.822624e-03	k: 518	n:200000
Cons ci ratio: 2.094715e-02	ci left: 1.474470e-01	ci right 1.505732e-01	k: 29801	n:200000
KS ci ratio: 2.550190e-01	ci left: 1.029634e-03	ci right 1.335119e-03	k: 235	n:200000
BCMO1   200000 perm   45 sec   (4455 perm/sec)   p_kst 1.175000e-03   p_cons 1.490050e-01   p_joint 2.590000e-03

Joint ci ratio: 1.691016e-01	ci left: 2.336529e-03	ci right 2.772621e-03	k: 535	n:210000
Cons ci ratio: 2.044774e-02	ci left: 1.474178e-01	ci right 1.504680e-01	k: 31277	n:210000
KS ci ratio: 2.513220e-01	ci left: 1.011821e-03	ci right 1.306988e-03	k: 242	n:210000
BCMO1   210000 perm   48 sec   (4384 perm/sec)   p_kst 1.152381e-03   p_cons 1.489381e-01   p_joint 2.547619e-03

Joint ci ratio: 1.658850e-01	ci left: 2.321775e-03	ci right 2.746047e-03	k: 556	n:220000
Cons ci ratio: 1.995773e-02	ci left: 1.477045e-01	ci right 1.506866e-01	k: 32822	n:220000
KS ci ratio: 2.463060e-01	ci left: 1.008450e-03	ci right 1.295863e-03	k: 252	n:220000
BCMO1   220000 perm   51 sec   (4319 perm/sec)   p_kst 1.145455e-03   p_cons 1.491909e-01   p_joint 2.527273e-03

Joint ci ratio: 1.742457e-01	ci left: 2.004329e-03	ci right 2.390996e-03	k: 504	n:230000
Cons ci ratio: 1.951870e-02	ci left: 1.477419e-01	ci right 1.506583e-01	k: 34315	n:230000
KS ci ratio: 2.406644e-01	ci left: 1.013596e-03	ci right 1.294871e-03	k: 264	n:230000
BCMO1   230000 perm   54 sec   (4242 perm/sec)   p_kst 1.147826e-03   p_cons 1.491957e-01   p_joint 2.191304e-03

Joint ci ratio: 1.697647e-01	ci left: 2.028475e-03	ci right 2.408707e-03	k: 531	n:240000
Cons ci ratio: 1.909927e-02	ci left: 1.478847e-01	ci right 1.507405e-01	k: 35834	n:240000
KS ci ratio: 2.358201e-01	ci left: 1.014460e-03	ci right 1.289482e-03	k: 275	n:240000
BCMO1   240000 perm   57 sec   (4178 perm/sec)   p_kst 1.145833e-03   p_cons 1.493083e-01   p_joint 2.212500e-03

Joint ci ratio: 1.497893e-01	ci left: 2.527325e-03	ci right 2.940338e-03	k: 682	n:250000
Cons ci ratio: 1.869165e-02	ci left: 1.482079e-01	ci right 1.510082e-01	k: 37401	n:250000
KS ci ratio: 2.316614e-01	ci left: 1.011539e-03	ci right 1.280241e-03	k: 285	n:250000
BCMO1   250000 perm   61 sec   (4121 perm/sec)   p_kst 1.140000e-03   p_cons 1.496040e-01   p_joint 2.728000e-03

Joint ci ratio: 1.468101e-01	ci left: 2.533817e-03	ci right 2.938933e-03	k: 710	n:260000
Cons ci ratio: 1.834090e-02	ci left: 1.480662e-01	ci right 1.508108e-01	k: 38853	n:260000
KS ci ratio: 2.265686e-01	ci left: 1.019765e-03	ci right 1.283865e-03	k: 298	n:260000
BCMO1   260000 perm   64 sec   (4058 perm/sec)   p_kst 1.146154e-03   p_cons 1.494346e-01   p_joint 2.730769e-03

Joint ci ratio: 1.301586e-01	ci left: 3.130167e-03	ci right 3.569489e-03	k: 903	n:270000
Cons ci ratio: 1.797484e-02	ci left: 1.484189e-01	ci right 1.511146e-01	k: 40436	n:270000
KS ci ratio: 2.207377e-01	ci left: 1.037937e-03	ci right 1.298886e-03	k: 314	n:270000
BCMO1   270000 perm   68 sec   (3999 perm/sec)   p_kst 1.162963e-03   p_cons 1.497630e-01   p_joint 3.344444e-03

Joint ci ratio: 1.343297e-01	ci left: 2.828414e-03	ci right 3.239122e-03	k: 848	n:280000
Cons ci ratio: 1.764171e-02	ci left: 1.485761e-01	ci right 1.512240e-01	k: 41971	n:280000
KS ci ratio: 2.173159e-01	ci left: 1.034623e-03	ci right 1.290168e-03	k: 324	n:280000
BCMO1   280000 perm   71 sec   (3944 perm/sec)   p_kst 1.157143e-03   p_cons 1.498964e-01   p_joint 3.028571e-03

Joint ci ratio: 1.324718e-01	ci left: 2.810878e-03	ci right 3.212949e-03	k: 872	n:290000
Cons ci ratio: 1.733253e-02	ci left: 1.486335e-01	ci right 1.512356e-01	k: 43480	n:290000
KS ci ratio: 2.124668e-01	ci left: 1.047888e-03	ci right 1.300182e-03	k: 339	n:290000
BCMO1   290000 perm   75 sec   (3881 perm/sec)   p_kst 1.168966e-03   p_cons 1.499310e-01   p_joint 3.006897e-03

Joint ci ratio: 1.299643e-01	ci left: 2.826796e-03	ci right 3.222901e-03	k: 906	n:300000
Cons ci ratio: 1.705579e-02	ci left: 1.484383e-01	ci right 1.509951e-01	k: 44914	n:300000
KS ci ratio: 2.082223e-01	ci left: 1.057167e-03	ci right 1.305963e-03	k: 353	n:300000
BCMO1   300000 perm   78 sec   (3829 perm/sec)   p_kst 1.176667e-03   p_cons 1.497133e-01   p_joint 3.020000e-03

Joint ci ratio: 1.309150e-01	ci left: 2.695030e-03	ci right 3.075648e-03	k: 893	n:310000
Cons ci ratio: 1.676955e-02	ci left: 1.485936e-01	ci right 1.511097e-01	k: 46453	n:310000
KS ci ratio: 2.036691e-01	ci left: 1.072017e-03	ci right 1.318105e-03	k: 369	n:310000
BCMO1   310000 perm   82 sec   (3776 perm/sec)   p_kst 1.190323e-03   p_cons 1.498484e-01   p_joint 2.880645e-03

Joint ci ratio: 1.256076e-01	ci left: 2.843731e-03	ci right 3.227856e-03	k: 970	n:320000
Cons ci ratio: 1.650069e-02	ci left: 1.486866e-01	ci right 1.511635e-01	k: 47975	n:320000
KS ci ratio: 2.004446e-01	ci left: 1.074120e-03	ci right 1.316309e-03	k: 381	n:320000
BCMO1   320000 perm   86 sec   (3730 perm/sec)   p_kst 1.190625e-03   p_cons 1.499219e-01   p_joint 3.031250e-03

Joint ci ratio: 1.279472e-01	ci left: 2.654844e-03	ci right 3.020640e-03	k: 935	n:330000
Cons ci ratio: 1.625036e-02	ci left: 1.486806e-01	ci right 1.511195e-01	k: 49466	n:330000
KS ci ratio: 1.983793e-01	ci left: 1.064602e-03	ci right 1.301873e-03	k: 389	n:330000
BCMO1   330000 perm   90 sec   (3682 perm/sec)   p_kst 1.178788e-03   p_cons 1.498970e-01   p_joint 2.833333e-03

Joint ci ratio: 1.257488e-01	ci left: 2.670740e-03	ci right 3.031933e-03	k: 968	n:340000
Cons ci ratio: 1.601348e-02	ci left: 1.486371e-01	ci right 1.510394e-01	k: 50944	n:340000
KS ci ratio: 1.944299e-01	ci left: 1.078036e-03	ci right 1.312951e-03	k: 405	n:340000
BCMO1   340000 perm   93 sec   (3637 perm/sec)   p_kst 1.191176e-03   p_cons 1.498353e-01   p_joint 2.847059e-03

Joint ci ratio: 1.144595e-01	ci left: 3.148774e-03	ci right 3.533807e-03	k: 1168	n:350000
Cons ci ratio: 1.577375e-02	ci left: 1.488043e-01	ci right 1.511730e-01	k: 52495	n:350000
KS ci ratio: 1.920793e-01	ci left: 1.074424e-03	ci right 1.305391e-03	k: 415	n:350000
BCMO1   350000 perm   97 sec   (3594 perm/sec)   p_kst 1.185714e-03   p_cons 1.499857e-01   p_joint 3.337143e-03

Joint ci ratio: 1.131137e-01	ci left: 3.136871e-03	ci right 3.515638e-03	k: 1196	n:360000
Cons ci ratio: 1.555446e-02	ci left: 1.487990e-01	ci right 1.511344e-01	k: 53987	n:360000
KS ci ratio: 1.902596e-01	ci left: 1.065737e-03	ci right 1.292415e-03	k: 423	n:360000
BCMO1   360000 perm   101 sec   (3550 perm/sec)   p_kst 1.175000e-03   p_cons 1.499639e-01   p_joint 3.322222e-03

Joint ci ratio: 1.114498e-01	ci left: 3.146656e-03	ci right 3.520648e-03	k: 1232	n:370000
Cons ci ratio: 1.534831e-02	ci left: 1.487242e-01	ci right 1.510272e-01	k: 55453	n:370000
KS ci ratio: 1.874080e-01	ci left: 1.070408e-03	ci right 1.294279e-03	k: 436	n:370000
BCMO1   370000 perm   105 sec   (3507 perm/sec)   p_kst 1.178378e-03   p_cons 1.498730e-01   p_joint 3.329730e-03

Joint ci ratio: 1.072997e-01	ci left: 3.312146e-03	ci right 3.690224e-03	k: 1329	n:380000
Cons ci ratio: 1.515123e-02	ci left: 1.486352e-01	ci right 1.509070e-01	k: 56912	n:380000
KS ci ratio: 1.850931e-01	ci left: 1.069837e-03	ci right 1.290514e-03	k: 447	n:380000
BCMO1   380000 perm   110 sec   (3466 perm/sec)   p_kst 1.176316e-03   p_cons 1.497684e-01   p_joint 3.497368e-03

Joint ci ratio: 1.115047e-01	ci left: 2.982783e-03	ci right 3.337483e-03	k: 1231	n:390000
Cons ci ratio: 1.496035e-02	ci left: 1.485714e-01	ci right 1.508133e-01	k: 58379	n:390000
KS ci ratio: 1.834632e-01	ci left: 1.061971e-03	ci right 1.278883e-03	k: 455	n:390000
BCMO1   390000 perm   114 sec   (3423 perm/sec)   p_kst 1.166667e-03   p_cons 1.496897e-01   p_joint 3.156410e-03

Joint ci ratio: 1.098664e-01	ci left: 2.998153e-03	ci right 3.349105e-03	k: 1268	n:400000
Cons ci ratio: 1.477331e-02	ci left: 1.485657e-01	ci right 1.507793e-01	k: 59868	n:400000
KS ci ratio: 1.816797e-01	ci left: 1.056893e-03	ci right 1.270438e-03	k: 464	n:400000
BCMO1   400000 perm   118 sec   (3383 perm/sec)   p_kst 1.160000e-03   p_cons 1.496700e-01   p_joint 3.170000e-03

Joint ci ratio: 1.083815e-01	ci left: 3.008064e-03	ci right 3.355113e-03	k: 1303	n:410000
Cons ci ratio: 1.458487e-02	ci left: 1.487040e-01	ci right 1.508912e-01	k: 61416	n:410000
KS ci ratio: 1.791919e-01	ci left: 1.061391e-03	ci right 1.272590e-03	k: 477	n:410000
BCMO1   410000 perm   123 sec   (3343 perm/sec)   p_kst 1.163415e-03   p_cons 1.497951e-01   p_joint 3.178049e-03

Joint ci ratio: 1.100052e-01	ci left: 2.848426e-03	ci right 3.182299e-03	k: 1265	n:420000
Cons ci ratio: 1.440952e-02	ci left: 1.487291e-01	ci right 1.508901e-01	k: 62919	n:420000
KS ci ratio: 1.769840e-01	ci left: 1.063418e-03	ci right 1.272133e-03	k: 489	n:420000
BCMO1   420000 perm   127 sec   (3302 perm/sec)   p_kst 1.164286e-03   p_cons 1.498071e-01   p_joint 3.011905e-03

Joint ci ratio: 1.089779e-01	ci left: 2.836468e-03	ci right 3.165635e-03	k: 1289	n:430000
Cons ci ratio: 1.424685e-02	ci left: 1.486371e-01	ci right 1.507722e-01	k: 64372	n:430000
KS ci ratio: 1.750304e-01	ci left: 1.063141e-03	ci right 1.269256e-03	k: 500	n:430000
BCMO1   430000 perm   132 sec   (3263 perm/sec)   p_kst 1.162791e-03   p_cons 1.497023e-01   p_joint 2.997674e-03

Joint ci ratio: 1.076506e-01	ci left: 2.842760e-03	ci right 3.168385e-03	k: 1321	n:440000
Cons ci ratio: 1.408767e-02	ci left: 1.485835e-01	ci right 1.506938e-01	k: 65840	n:440000
KS ci ratio: 1.731401e-01	ci left: 1.062890e-03	ci right 1.266498e-03	k: 511	n:440000
BCMO1   440000 perm   136 sec   (3226 perm/sec)   p_kst 1.161364e-03   p_cons 1.496364e-01   p_joint 3.002273e-03

Joint ci ratio: 9.869597e-02	ci left: 3.320872e-03	ci right 3.667791e-03	k: 1571	n:450000
Cons ci ratio: 1.392946e-02	ci left: 1.486100e-01	ci right 1.506967e-01	k: 67343	n:450000
KS ci ratio: 1.718038e-01	ci left: 1.056280e-03	ci right 1.256898e-03	k: 519	n:450000
BCMO1   450000 perm   141 sec   (3190 perm/sec)   p_kst 1.153333e-03   p_cons 1.496511e-01   p_joint 3.491111e-03

Joint ci ratio: 9.752396e-02	ci left: 3.329262e-03	ci right 3.672691e-03	k: 1609	n:460000
Cons ci ratio: 1.377787e-02	ci left: 1.486094e-01	ci right 1.506733e-01	k: 68834	n:460000
KS ci ratio: 1.704980e-01	ci left: 1.049964e-03	ci right 1.247710e-03	k: 527	n:460000
BCMO1   460000 perm   146 sec   (3155 perm/sec)   p_kst 1.145652e-03   p_cons 1.496391e-01   p_joint 3.497826e-03

Joint ci ratio: 9.624632e-02	ci left: 3.347700e-03	ci right 3.688252e-03	k: 1652	n:470000
Cons ci ratio: 1.363375e-02	ci left: 1.485602e-01	ci right 1.506016e-01	k: 70302	n:470000
KS ci ratio: 1.682811e-01	ci left: 1.056149e-03	ci right 1.252212e-03	k: 541	n:470000
BCMO1   470000 perm   151 sec   (3119 perm/sec)   p_kst 1.151064e-03   p_cons 1.495787e-01   p_joint 3.514894e-03

Joint ci ratio: 1.033983e-01	ci left: 2.831011e-03	ci right 3.141703e-03	k: 1432	n:480000
Cons ci ratio: 1.348081e-02	ci left: 1.487624e-01	ci right 1.507835e-01	k: 71890	n:480000
KS ci ratio: 1.664485e-01	ci left: 1.058098e-03	ci right 1.252170e-03	k: 553	n:480000
BCMO1   480000 perm   156 sec   (3085 perm/sec)   p_kst 1.152083e-03   p_cons 1.497708e-01   p_joint 2.983333e-03

Joint ci ratio: 9.471332e-02	ci left: 3.318630e-03	ci right 3.650549e-03	k: 1706	n:490000
Cons ci ratio: 1.334733e-02	ci left: 1.486817e-01	ci right 1.506816e-01	k: 73343	n:490000
KS ci ratio: 1.646745e-01	ci left: 1.059980e-03	ci right 1.252119e-03	k: 565	n:490000
BCMO1   490000 perm   161 sec   (3047 perm/sec)   p_kst 1.153061e-03   p_cons 1.496796e-01   p_joint 3.481633e-03

Joint ci ratio: 9.383812e-02	ci left: 3.314748e-03	ci right 3.643047e-03	k: 1738	n:500000
Cons ci ratio: 1.321420e-02	ci left: 1.486722e-01	ci right 1.506518e-01	k: 74830	n:500000
KS ci ratio: 1.635235e-01	ci left: 1.054123e-03	ci right 1.243734e-03	k: 573	n:500000
BCMO1   500000 perm   166 sec   (3016 perm/sec)   p_kst 1.146000e-03   p_cons 1.496600e-01   p_joint 3.476000e-03

Joint ci ratio: 9.754076e-02	ci left: 3.002839e-03	ci right 3.312652e-03	k: 1609	n:510000
Cons ci ratio: 1.308084e-02	ci left: 1.487433e-01	ci right 1.507038e-01	k: 76358	n:510000
KS ci ratio: 1.621177e-01	ci left: 1.052263e-03	ci right 1.239753e-03	k: 583	n:510000
BCMO1   510000 perm   171 sec   (2986 perm/sec)   p_kst 1.143137e-03   p_cons 1.497216e-01   p_joint 3.154902e-03

Joint ci ratio: 9.688198e-02	ci left: 2.986370e-03	ci right 3.292284e-03	k: 1631	n:520000
Cons ci ratio: 1.295487e-02	ci left: 1.487447e-01	ci right 1.506861e-01	k: 77851	n:520000
KS ci ratio: 1.610191e-01	ci left: 1.046789e-03	ci right 1.231918e-03	k: 591	n:520000
BCMO1   520000 perm   176 sec   (2954 perm/sec)   p_kst 1.136538e-03   p_cons 1.497135e-01   p_joint 3.136538e-03

Joint ci ratio: 9.170295e-02	ci left: 3.278246e-03	ci right 3.595145e-03	k: 1820	n:530000
Cons ci ratio: 1.283732e-02	ci left: 1.486501e-01	ci right 1.505726e-01	k: 79293	n:530000
KS ci ratio: 1.602101e-01	ci left: 1.037904e-03	ci right 1.220450e-03	k: 597	n:530000
BCMO1   530000 perm   181 sec   (2924 perm/sec)   p_kst 1.126415e-03   p_cons 1.496094e-01   p_joint 3.433962e-03

Joint ci ratio: 9.526198e-02	ci left: 2.976975e-03	ci right 3.276543e-03	k: 1687	n:540000
Cons ci ratio: 1.272134e-02	ci left: 1.485905e-01	ci right 1.504947e-01	k: 80752	n:540000
KS ci ratio: 1.586263e-01	ci left: 1.040019e-03	ci right 1.220957e-03	k: 609	n:540000
BCMO1   540000 perm   186 sec   (2896 perm/sec)   p_kst 1.127778e-03   p_cons 1.495407e-01   p_joint 3.124074e-03

Joint ci ratio: 9.453715e-02	ci left: 2.968998e-03	ci right 3.265365e-03	k: 1713	n:550000
Cons ci ratio: 1.260186e-02	ci left: 1.486656e-01	ci right 1.505527e-01	k: 82284	n:550000
KS ci ratio: 1.574693e-01	ci left: 1.036826e-03	ci right 1.215768e-03	k: 618	n:550000
BCMO1   550000 perm   192 sec   (2869 perm/sec)   p_kst 1.123636e-03   p_cons 1.496073e-01   p_joint 3.114545e-03

Joint ci ratio: 9.374758e-02	ci left: 2.966547e-03	ci right 3.260060e-03	k: 1742	n:560000
Cons ci ratio: 1.249051e-02	ci left: 1.486400e-01	ci right 1.505100e-01	k: 83761	n:560000
KS ci ratio: 1.563372e-01	ci left: 1.033751e-03	ci right 1.210760e-03	k: 627	n:560000
BCMO1   560000 perm   197 sec   (2841 perm/sec)   p_kst 1.119643e-03   p_cons 1.495732e-01   p_joint 3.110714e-03

Joint ci ratio: 9.281997e-02	ci left: 2.974474e-03	ci right 3.265701e-03	k: 1777	n:570000
Cons ci ratio: 1.237609e-02	ci left: 1.487380e-01	ci right 1.505919e-01	k: 85308	n:570000
KS ci ratio: 1.545024e-01	ci left: 1.040908e-03	ci right 1.216857e-03	k: 642	n:570000
BCMO1   570000 perm   203 sec   (2813 perm/sec)   p_kst 1.126316e-03   p_cons 1.496632e-01   p_joint 3.117544e-03

Joint ci ratio: 9.194479e-02	ci left: 2.980456e-03	ci right 3.269370e-03	k: 1811	n:580000
Cons ci ratio: 1.226508e-02	ci left: 1.488257e-01	ci right 1.506640e-01	k: 86851	n:580000
KS ci ratio: 1.530804e-01	ci left: 1.042855e-03	ci right 1.217362e-03	k: 654	n:580000
BCMO1   580000 perm   208 sec   (2784 perm/sec)   p_kst 1.127586e-03   p_cons 1.497431e-01   p_joint 3.122414e-03

Joint ci ratio: 9.114346e-02	ci left: 2.982936e-03	ci right 3.269435e-03	k: 1843	n:590000
Cons ci ratio: 1.215718e-02	ci left: 1.489072e-01	ci right 1.507302e-01	k: 88392	n:590000
KS ci ratio: 1.516971e-01	ci left: 1.044743e-03	ci right 1.217843e-03	k: 666	n:590000
BCMO1   590000 perm   214 sec   (2758 perm/sec)   p_kst 1.128814e-03   p_cons 1.498169e-01   p_joint 3.123729e-03

Joint ci ratio: 9.017006e-02	ci left: 2.998377e-03	ci right 3.283121e-03	k: 1883	n:600000
Cons ci ratio: 1.205151e-02	ci left: 1.489976e-01	ci right 1.508058e-01	k: 89940	n:600000
KS ci ratio: 1.492542e-01	ci left: 1.062618e-03	ci right 1.235590e-03	k: 688	n:600000
BCMO1   600000 perm   220 sec   (2733 perm/sec)   p_kst 1.146667e-03   p_cons 1.499000e-01   p_joint 3.138333e-03

Joint ci ratio: 8.950763e-02	ci left: 2.994093e-03	ci right 3.276232e-03	k: 1911	n:610000
Cons ci ratio: 1.195555e-02	ci left: 1.489363e-01	ci right 1.507293e-01	k: 91397	n:610000
KS ci ratio: 1.485023e-01	ci left: 1.056245e-03	ci right 1.227238e-03	k: 695	n:610000
BCMO1   610000 perm   225 sec   (2707 perm/sec)   p_kst 1.139344e-03   p_cons 1.498311e-01   p_joint 3.132787e-03

Joint ci ratio: 9.034314e-02	ci left: 2.890612e-03	ci right 3.165677e-03	k: 1876	n:620000
Cons ci ratio: 1.185742e-02	ci left: 1.489720e-01	ci right 1.507506e-01	k: 92913	n:620000
KS ci ratio: 1.477616e-01	ci left: 1.050081e-03	ci right 1.219152e-03	k: 702	n:620000
BCMO1   620000 perm   231 sec   (2682 perm/sec)   p_kst 1.132258e-03   p_cons 1.498597e-01   p_joint 3.025806e-03

Joint ci ratio: 8.941833e-02	ci left: 2.905244e-03	ci right 3.178723e-03	k: 1915	n:630000
Cons ci ratio: 1.175837e-02	ci left: 1.490779e-01	ci right 1.508428e-01	k: 94474	n:630000
KS ci ratio: 1.463116e-01	ci left: 1.054818e-03	ci right 1.222840e-03	k: 716	n:630000
BCMO1   630000 perm   237 sec   (2658 perm/sec)   p_kst 1.136508e-03   p_cons 1.499587e-01   p_joint 3.039683e-03

Joint ci ratio: 9.020295e-02	ci left: 2.809439e-03	ci right 3.076342e-03	k: 1882	n:640000
Cons ci ratio: 1.166497e-02	ci left: 1.491104e-01	ci right 1.508615e-01	k: 95990	n:640000
KS ci ratio: 1.449035e-01	ci left: 1.059414e-03	ci right 1.226404e-03	k: 730	n:640000
BCMO1   640000 perm   243 sec   (2634 perm/sec)   p_kst 1.140625e-03   p_cons 1.499844e-01   p_joint 2.940625e-03

Joint ci ratio: 8.953978e-02	ci left: 2.808325e-03	ci right 3.073059e-03	k: 1910	n:650000
Cons ci ratio: 1.157593e-02	ci left: 1.490944e-01	ci right 1.508318e-01	k: 97475	n:650000
KS ci ratio: 1.446080e-01	ci left: 1.047563e-03	ci right 1.212319e-03	k: 733	n:650000
BCMO1   650000 perm   249 sec   (2610 perm/sec)   p_kst 1.127692e-03   p_cons 1.499615e-01   p_joint 2.938462e-03

Joint ci ratio: 8.600293e-02	ci left: 3.002892e-03	ci right 3.274225e-03	k: 2070	n:660000
Cons ci ratio: 1.148835e-02	ci left: 1.490910e-01	ci right 1.508151e-01	k: 98968	n:660000
KS ci ratio: 1.430567e-01	ci left: 1.055061e-03	ci right 1.219065e-03	k: 749	n:660000
BCMO1   660000 perm   255 sec   (2587 perm/sec)   p_kst 1.134848e-03   p_cons 1.499515e-01   p_joint 3.136364e-03

Joint ci ratio: 8.557085e-02	ci left: 2.988743e-03	ci right 3.257373e-03	k: 2091	n:670000
Cons ci ratio: 1.139799e-02	ci left: 1.491934e-01	ci right 1.509051e-01	k: 100532	n:670000
KS ci ratio: 1.423942e-01	ci left: 1.049389e-03	ci right 1.211691e-03	k: 756	n:670000
BCMO1   670000 perm   261 sec   (2564 perm/sec)   p_kst 1.128358e-03   p_cons 1.500478e-01   p_joint 3.120896e-03

Joint ci ratio: 8.496389e-02	ci left: 2.987968e-03	ci right 3.254528e-03	k: 2121	n:680000
Cons ci ratio: 1.131495e-02	ci left: 1.491755e-01	ci right 1.508745e-01	k: 102016	n:680000
KS ci ratio: 1.412788e-01	ci left: 1.050977e-03	ci right 1.212144e-03	k: 768	n:680000
BCMO1   680000 perm   268 sec   (2541 perm/sec)   p_kst 1.129412e-03   p_cons 1.500235e-01   p_joint 3.119118e-03

Joint ci ratio: 8.023033e-02	ci left: 3.309462e-03	ci right 3.587487e-03	k: 2378	n:690000
Cons ci ratio: 1.123459e-02	ci left: 1.491380e-01	ci right 1.508244e-01	k: 103486	n:690000
KS ci ratio: 1.398311e-01	ci left: 1.058119e-03	ci right 1.218580e-03	k: 784	n:690000
BCMO1   690000 perm   274 sec   (2519 perm/sec)   p_kst 1.136232e-03   p_cons 1.499797e-01   p_joint 3.446377e-03

Joint ci ratio: 7.969626e-02	ci left: 3.306984e-03	ci right 3.582865e-03	k: 2410	n:700000
Cons ci ratio: 1.115448e-02	ci left: 1.491343e-01	ci right 1.508086e-01	k: 104979	n:700000
KS ci ratio: 1.383406e-01	ci left: 1.066444e-03	ci right 1.226302e-03	k: 801	n:700000
BCMO1   700000 perm   280 sec   (2497 perm/sec)   p_kst 1.144286e-03   p_cons 1.499700e-01   p_joint 3.442857e-03

Joint ci ratio: 7.918899e-02	ci left: 3.303201e-03	ci right 3.576932e-03	k: 2441	n:710000
Cons ci ratio: 1.107374e-02	ci left: 1.491842e-01	ci right 1.508468e-01	k: 106510	n:710000
KS ci ratio: 1.369805e-01	ci left: 1.073183e-03	ci right 1.232340e-03	k: 817	n:710000
BCMO1   710000 perm   287 sec   (2476 perm/sec)   p_kst 1.150704e-03   p_cons 1.500141e-01   p_joint 3.438028e-03

Joint ci ratio: 7.854798e-02	ci left: 3.311783e-03	ci right 3.583903e-03	k: 2481	n:720000
Cons ci ratio: 1.099610e-02	ci left: 1.492009e-01	ci right 1.508519e-01	k: 108018	n:720000
KS ci ratio: 1.360687e-01	ci left: 1.073034e-03	ci right 1.231024e-03	k: 828	n:720000
BCMO1   720000 perm   293 sec   (2456 perm/sec)   p_kst 1.150000e-03   p_cons 1.500250e-01   p_joint 3.445833e-03

Joint ci ratio: 7.806219e-02	ci left: 3.308050e-03	ci right 3.578105e-03	k: 2512	n:730000
Cons ci ratio: 1.091714e-02	ci left: 1.492855e-01	ci right 1.509255e-01	k: 109576	n:730000
KS ci ratio: 1.355795e-01	ci left: 1.066274e-03	ci right 1.222659e-03	k: 834	n:730000
BCMO1   730000 perm   300 sec   (2435 perm/sec)   p_kst 1.142466e-03   p_cons 1.501041e-01   p_joint 3.441096e-03

Joint ci ratio: 7.737196e-02	ci left: 3.322977e-03	ci right 3.591744e-03	k: 2557	n:740000
Cons ci ratio: 1.084261e-02	ci left: 1.493031e-01	ci right 1.509321e-01	k: 111086	n:740000
KS ci ratio: 1.339836e-01	ci left: 1.077981e-03	ci right 1.234074e-03	k: 854	n:740000
BCMO1   740000 perm   306 sec   (2415 perm/sec)   p_kst 1.154054e-03   p_cons 1.501162e-01   p_joint 3.455405e-03

Joint ci ratio: 7.690753e-02	ci left: 3.319206e-03	ci right 3.585985e-03	k: 2588	n:750000
Cons ci ratio: 1.077043e-02	ci left: 1.493003e-01	ci right 1.509184e-01	k: 112581	n:750000
KS ci ratio: 1.334389e-01	ci left: 1.072629e-03	ci right 1.227265e-03	k: 861	n:750000
BCMO1   750000 perm   313 sec   (2396 perm/sec)   p_kst 1.148000e-03   p_cons 1.501080e-01   p_joint 3.450667e-03

Joint ci ratio: 7.640748e-02	ci left: 3.319412e-03	ci right 3.584395e-03	k: 2622	n:760000
Cons ci ratio: 1.070238e-02	ci left: 1.492333e-01	ci right 1.508404e-01	k: 114027	n:760000
KS ci ratio: 1.323681e-01	ci left: 1.076324e-03	ci right 1.230150e-03	k: 875	n:760000
BCMO1   760000 perm   320 sec   (2377 perm/sec)   p_kst 1.151316e-03   p_cons 1.500355e-01   p_joint 3.450000e-03

Joint ci ratio: 6.999185e-02	ci left: 3.915105e-03	ci right 4.200334e-03	k: 3123	n:770000
Cons ci ratio: 1.063673e-02	ci left: 1.491409e-01	ci right 1.507370e-01	k: 115452	n:770000
KS ci ratio: 1.316191e-01	ci left: 1.074904e-03	ci right 1.227590e-03	k: 885	n:770000
BCMO1   770000 perm   327 sec   (2358 perm/sec)   p_kst 1.149351e-03   p_cons 1.499377e-01   p_joint 4.055844e-03

Joint ci ratio: 7.540786e-02	ci left: 3.322339e-03	ci right 3.583934e-03	k: 2692	n:780000
Cons ci ratio: 1.056580e-02	ci left: 1.492070e-01	ci right 1.507931e-01	k: 116999	n:780000
KS ci ratio: 1.300857e-01	ci left: 1.087166e-03	ci right 1.239655e-03	k: 906	n:780000
BCMO1   780000 perm   333 sec   (2340 perm/sec)   p_kst 1.161538e-03   p_cons 1.499987e-01   p_joint 3.451282e-03

Joint ci ratio: 7.486748e-02	ci left: 3.328724e-03	ci right 3.588862e-03	k: 2731	n:790000
Cons ci ratio: 1.049934e-02	ci left: 1.491968e-01	ci right 1.507728e-01	k: 118487	n:790000
KS ci ratio: 1.289529e-01	ci left: 1.093001e-03	ci right 1.244872e-03	k: 922	n:790000
BCMO1   790000 perm   340 sec   (2322 perm/sec)   p_kst 1.167089e-03   p_cons 1.499835e-01   p_joint 3.456962e-03

Joint ci ratio: 7.448705e-02	ci left: 3.321461e-03	ci right 3.579655e-03	k: 2759	n:800000
Cons ci ratio: 1.043126e-02	ci left: 1.492569e-01	ci right 1.508232e-01	k: 120031	n:800000
KS ci ratio: 1.280542e-01	ci left: 1.095066e-03	ci right 1.246083e-03	k: 935	n:800000
BCMO1   800000 perm   347 sec   (2303 perm/sec)   p_kst 1.168750e-03   p_cons 1.500387e-01   p_joint 3.448750e-03

Joint ci ratio: 7.404578e-02	ci left: 3.320439e-03	ci right 3.576959e-03	k: 2792	n:810000
Cons ci ratio: 1.036744e-02	ci left: 1.492427e-01	ci right 1.507993e-01	k: 121516	n:810000
KS ci ratio: 1.273757e-01	ci left: 1.093498e-03	ci right 1.243439e-03	k: 945	n:810000
BCMO1   810000 perm   355 sec   (2285 perm/sec)   p_kst 1.166667e-03   p_cons 1.500198e-01   p_joint 3.446914e-03

Joint ci ratio: 7.346890e-02	ci left: 3.332616e-03	ci right 3.587985e-03	k: 2836	n:820000
Cons ci ratio: 1.030463e-02	ci left: 1.492326e-01	ci right 1.507796e-01	k: 123004	n:820000
KS ci ratio: 1.261149e-01	ci left: 1.102599e-03	ci right 1.252180e-03	k: 964	n:820000
BCMO1   820000 perm   362 sec   (2266 perm/sec)   p_kst 1.175610e-03   p_cons 1.500049e-01   p_joint 3.458537e-03

Joint ci ratio: 7.296887e-02	ci left: 3.338592e-03	ci right 3.592604e-03	k: 2875	n:830000
Cons ci ratio: 1.024121e-02	ci left: 1.492661e-01	ci right 1.508038e-01	k: 124528	n:830000
KS ci ratio: 1.252098e-01	ci left: 1.105652e-03	ci right 1.254491e-03	k: 978	n:830000
BCMO1   830000 perm   369 sec   (2248 perm/sec)   p_kst 1.178313e-03   p_cons 1.500337e-01   p_joint 3.463855e-03

Joint ci ratio: 7.250388e-02	ci left: 3.342093e-03	ci right 3.594683e-03	k: 2912	n:840000
Cons ci ratio: 1.017999e-02	ci left: 1.492727e-01	ci right 1.508012e-01	k: 126030	n:840000
KS ci ratio: 1.245123e-01	ci left: 1.105176e-03	ci right 1.253060e-03	k: 989	n:840000
BCMO1   840000 perm   377 sec   (2229 perm/sec)   p_kst 1.177381e-03   p_cons 1.500357e-01   p_joint 3.466667e-03

Joint ci ratio: 7.208445e-02	ci left: 3.342052e-03	ci right 3.593116e-03	k: 2946	n:850000
Cons ci ratio: 1.011771e-02	ci left: 1.493331e-01	ci right 1.508528e-01	k: 127578	n:850000
KS ci ratio: 1.238883e-01	ci left: 1.103573e-03	ci right 1.250448e-03	k: 999	n:850000
BCMO1   850000 perm   384 sec   (2213 perm/sec)   p_kst 1.175294e-03   p_cons 1.500918e-01   p_joint 3.465882e-03

Joint ci ratio: 7.164810e-02	ci left: 3.344299e-03	ci right 3.593948e-03	k: 2982	n:860000
Cons ci ratio: 1.005802e-02	ci left: 1.493550e-01	ci right 1.508660e-01	k: 129094	n:860000
KS ci ratio: 1.232736e-01	ci left: 1.102009e-03	ci right 1.247896e-03	k: 1009	n:860000
BCMO1   860000 perm   391 sec   (2197 perm/sec)   p_kst 1.173256e-03   p_cons 1.501093e-01   p_joint 3.467442e-03

Joint ci ratio: 7.130258e-02	ci left: 3.338596e-03	ci right 3.586567e-03	k: 3011	n:870000
Cons ci ratio: 1.000145e-02	ci left: 1.493237e-01	ci right 1.508258e-01	k: 130564	n:870000
KS ci ratio: 1.224877e-01	ci left: 1.103826e-03	ci right 1.248954e-03	k: 1022	n:870000
BCMO1   870000 perm   399 sec   (2180 perm/sec)   p_kst 1.174713e-03   p_cons 1.500736e-01   p_joint 3.460920e-03

Joint ci ratio: 7.084522e-02	ci left: 3.344188e-03	ci right 3.590916e-03	k: 3050	n:880000
Cons ci ratio: 9.943164e-03	ci left: 1.493611e-01	ci right 1.508548e-01	k: 132094	n:880000
KS ci ratio: 1.217167e-01	ci left: 1.105604e-03	ci right 1.249985e-03	k: 1035	n:880000
BCMO1   880000 perm   407 sec   (2164 perm/sec)   p_kst 1.176136e-03   p_cons 1.501068e-01   p_joint 3.465909e-03

Joint ci ratio: 7.046523e-02	ci left: 3.343036e-03	ci right 3.588303e-03	k: 3083	n:890000
Cons ci ratio: 9.887062e-03	ci left: 1.493675e-01	ci right 1.508527e-01	k: 133597	n:890000
KS ci ratio: 1.211336e-01	ci left: 1.104076e-03	ci right 1.247517e-03	k: 1045	n:890000
BCMO1   890000 perm   414 sec   (2148 perm/sec)   p_kst 1.174157e-03   p_cons 1.501090e-01   p_joint 3.464045e-03

Joint ci ratio: 7.006874e-02	ci left: 3.344097e-03	ci right 3.588005e-03	k: 3118	n:900000
Cons ci ratio: 9.832370e-03	ci left: 1.493616e-01	ci right 1.508385e-01	k: 135089	n:900000
KS ci ratio: 1.206733e-01	ci left: 1.100428e-03	ci right 1.242813e-03	k: 1053	n:900000
BCMO1   900000 perm   422 sec   (2133 perm/sec)   p_kst 1.170000e-03   p_cons 1.500989e-01   p_joint 3.464444e-03

Joint ci ratio: 6.970104e-02	ci left: 3.342979e-03	ci right 3.585473e-03	k: 3151	n:910000
Cons ci ratio: 9.777944e-03	ci left: 1.493722e-01	ci right 1.508410e-01	k: 136596	n:910000
KS ci ratio: 1.199921e-01	ci left: 1.101126e-03	ci right 1.242740e-03	k: 1065	n:910000
BCMO1   910000 perm   430 sec   (2118 perm/sec)   p_kst 1.170330e-03   p_cons 1.501055e-01   p_joint 3.462637e-03

Joint ci ratio: 6.930633e-02	ci left: 3.345093e-03	ci right 3.586311e-03	k: 3187	n:920000
Cons ci ratio: 9.722052e-03	ci left: 1.494445e-01	ci right 1.509055e-01	k: 138160	n:920000
KS ci ratio: 1.192670e-01	ci left: 1.102865e-03	ci right 1.243785e-03	k: 1078	n:920000
BCMO1   920000 perm   438 sec   (2102 perm/sec)   p_kst 1.171739e-03   p_cons 1.501739e-01   p_joint 3.464130e-03

Joint ci ratio: 6.890753e-02	ci left: 3.348222e-03	ci right 3.588221e-03	k: 3224	n:930000
Cons ci ratio: 9.674033e-03	ci left: 1.493328e-01	ci right 1.507855e-01	k: 139554	n:930000
KS ci ratio: 1.187182e-01	ci left: 1.101438e-03	ci right 1.241483e-03	k: 1088	n:930000
BCMO1   930000 perm   446 sec   (2086 perm/sec)   p_kst 1.169892e-03   p_cons 1.500581e-01   p_joint 3.466667e-03

Joint ci ratio: 6.857885e-02	ci left: 3.345014e-03	ci right 3.583594e-03	k: 3255	n:940000
Cons ci ratio: 9.622422e-03	ci left: 1.493371e-01	ci right 1.507821e-01	k: 141055	n:940000
KS ci ratio: 1.181770e-01	ci left: 1.100044e-03	ci right 1.239229e-03	k: 1098	n:940000
BCMO1   940000 perm   454 sec   (2072 perm/sec)   p_kst 1.168085e-03   p_cons 1.500585e-01   p_joint 3.462766e-03

Joint ci ratio: 6.822359e-02	ci left: 3.344980e-03	ci right 3.582273e-03	k: 3289	n:950000
Cons ci ratio: 9.568705e-03	ci left: 1.494191e-01	ci right 1.508567e-01	k: 142630	n:950000
KS ci ratio: 1.174313e-01	ci left: 1.102767e-03	ci right 1.241356e-03	k: 1112	n:950000
BCMO1   950000 perm   462 sec   (2057 perm/sec)   p_kst 1.170526e-03   p_cons 1.501368e-01   p_joint 3.462105e-03

Joint ci ratio: 6.789430e-02	ci left: 3.342903e-03	ci right 3.578859e-03	k: 3321	n:960000
Cons ci ratio: 9.519685e-03	ci left: 1.493975e-01	ci right 1.508275e-01	k: 144107	n:960000
KS ci ratio: 1.170640e-01	ci left: 1.098358e-03	ci right 1.235930e-03	k: 1119	n:960000
BCMO1   960000 perm   470 sec   (2043 perm/sec)   p_kst 1.165625e-03   p_cons 1.501115e-01   p_joint 3.459375e-03

Joint ci ratio: 6.748901e-02	ci left: 3.348979e-03	ci right 3.583898e-03	k: 3361	n:970000
Cons ci ratio: 9.470531e-03	ci left: 1.494000e-01	ci right 1.508227e-01	k: 145607	n:970000
KS ci ratio: 1.164934e-01	ci left: 1.098044e-03	ci right 1.234860e-03	k: 1130	n:970000
BCMO1   970000 perm   478 sec   (2029 perm/sec)   p_kst 1.164948e-03   p_cons 1.501103e-01   p_joint 3.464948e-03

Joint ci ratio: 6.719006e-02	ci left: 3.344903e-03	ci right 3.578455e-03	k: 3391	n:980000
Cons ci ratio: 9.419531e-03	ci left: 1.494728e-01	ci right 1.508884e-01	k: 147176	n:980000
KS ci ratio: 1.160328e-01	ci left: 1.095756e-03	ci right 1.231710e-03	k: 1139	n:980000
BCMO1   980000 perm   486 sec   (2015 perm/sec)   p_kst 1.162245e-03   p_cons 1.501796e-01   p_joint 3.460204e-03

Joint ci ratio: 6.685585e-02	ci left: 3.344884e-03	ci right 3.577228e-03	k: 3425	n:990000
Cons ci ratio: 9.371904e-03	ci left: 1.494746e-01	ci right 1.508830e-01	k: 148676	n:990000
KS ci ratio: 1.152767e-01	ci left: 1.099401e-03	ci right 1.234858e-03	k: 1154	n:990000
BCMO1   990000 perm   495 sec   (2001 perm/sec)   p_kst 1.165657e-03   p_cons 1.501778e-01   p_joint 3.459596e-03

Joint ci ratio: 6.653622e-02	ci left: 3.343884e-03	ci right 3.575006e-03	k: 3458	n:1000000
Cons ci ratio: 9.323713e-03	ci left: 1.495113e-01	ci right 1.509128e-01	k: 150211	n:1000000
KS ci ratio: 1.149292e-01	ci left: 1.095205e-03	ci right 1.229711e-03	k: 1161	n:1000000
BCMO1   1000000 perm   503 sec   (1988 perm/sec)   p_kst 1.161000e-03   p_cons 1.502110e-01   p_joint 3.458000e-03

Joint ci ratio: 6.614515e-02	ci left: 3.350698e-03	ci right 3.580877e-03	k: 3499	n:1010000
Cons ci ratio: 9.275971e-03	ci left: 1.495551e-01	ci right 1.509498e-01	k: 151754	n:1010000
KS ci ratio: 1.142429e-01	ci left: 1.097825e-03	ci right 1.231794e-03	k: 1175	n:1010000
BCMO1   1010000 perm   512 sec   (1974 perm/sec)   p_kst 1.163366e-03   p_cons 1.502515e-01   p_joint 3.464356e-03

Joint ci ratio: 6.584492e-02	ci left: 3.348702e-03	ci right 3.577661e-03	k: 3531	n:1020000
Cons ci ratio: 9.227396e-03	ci left: 1.496412e-01	ci right 1.510294e-01	k: 153341	n:1020000
KS ci ratio: 1.138084e-01	ci left: 1.095634e-03	ci right 1.228793e-03	k: 1184	n:1020000
BCMO1   1020000 perm   520 sec   (1961 perm/sec)   p_kst 1.160784e-03   p_cons 1.503343e-01   p_joint 3.461765e-03

Joint ci ratio: 6.549344e-02	ci left: 3.352478e-03	ci right 3.580425e-03	k: 3569	n:1030000
Cons ci ratio: 9.184042e-03	ci left: 1.496016e-01	ci right 1.509829e-01	k: 154800	n:1030000
KS ci ratio: 1.133313e-01	ci left: 1.094430e-03	ci right 1.226847e-03	k: 1194	n:1030000
BCMO1   1030000 perm   529 sec   (1947 perm/sec)   p_kst 1.159223e-03   p_cons 1.502913e-01   p_joint 3.465049e-03

Joint ci ratio: 6.514753e-02	ci left: 3.356185e-03	ci right 3.583133e-03	k: 3607	n:1040000
Cons ci ratio: 9.138987e-03	ci left: 1.496271e-01	ci right 1.510018e-01	k: 156326	n:1040000
KS ci ratio: 1.128133e-01	ci left: 1.094184e-03	ci right 1.225927e-03	k: 1205	n:1040000
BCMO1   1040000 perm   538 sec   (1934 perm/sec)   p_kst 1.158654e-03   p_cons 1.503135e-01   p_joint 3.468269e-03

Joint ci ratio: 6.483381e-02	ci left: 3.357013e-03	ci right 3.582883e-03	k: 3642	n:1050000
Cons ci ratio: 9.094623e-03	ci left: 1.496512e-01	ci right 1.510193e-01	k: 157851	n:1050000
KS ci ratio: 1.123948e-01	ci left: 1.092094e-03	ci right 1.223064e-03	k: 1214	n:1050000
BCMO1   1050000 perm   547 sec   (1920 perm/sec)   p_kst 1.156190e-03   p_cons 1.503343e-01   p_joint 3.468571e-03

Joint ci ratio: 6.457746e-02	ci left: 3.352259e-03	ci right 3.576883e-03	k: 3671	n:1060000
Cons ci ratio: 9.050397e-03	ci left: 1.496889e-01	ci right 1.510507e-01	k: 159391	n:1060000
KS ci ratio: 1.119810e-01	ci left: 1.090043e-03	ci right 1.220255e-03	k: 1223	n:1060000
BCMO1   1060000 perm   556 sec   (1907 perm/sec)   p_kst 1.153774e-03   p_cons 1.503689e-01   p_joint 3.463208e-03

Joint ci ratio: 6.430670e-02	ci left: 3.349434e-03	ci right 3.572893e-03	k: 3702	n:1070000
Cons ci ratio: 9.007601e-03	ci left: 1.497036e-01	ci right 1.510591e-01	k: 160907	n:1070000
KS ci ratio: 1.114360e-01	ci left: 1.090757e-03	ci right 1.220379e-03	k: 1235	n:1070000
BCMO1   1070000 perm   565 sec   (1895 perm/sec)   p_kst 1.154206e-03   p_cons 1.503804e-01   p_joint 3.459813e-03

Joint ci ratio: 6.404792e-02	ci left: 3.345753e-03	ci right 3.568035e-03	k: 3732	n:1080000
Cons ci ratio: 8.966674e-03	ci left: 1.496819e-01	ci right 1.510310e-01	k: 162384	n:1080000
KS ci ratio: 1.108990e-01	ci left: 1.091460e-03	ci right 1.220499e-03	k: 1247	n:1080000
BCMO1   1080000 perm   574 sec   (1883 perm/sec)   p_kst 1.154630e-03   p_cons 1.503556e-01   p_joint 3.455556e-03

Joint ci ratio: 6.378373e-02	ci left: 3.343043e-03	ci right 3.564195e-03	k: 3763	n:1090000
Cons ci ratio: 8.926491e-03	ci left: 1.496552e-01	ci right 1.509980e-01	k: 163855	n:1090000
KS ci ratio: 1.102820e-01	ci left: 1.093935e-03	ci right 1.222500e-03	k: 1261	n:1090000
BCMO1   1090000 perm   583 sec   (1871 perm/sec)   p_kst 1.156881e-03   p_cons 1.503257e-01   p_joint 3.452294e-03

Joint ci ratio: 6.352278e-02	ci left: 3.340385e-03	ci right 3.560424e-03	k: 3794	n:1100000
Cons ci ratio: 8.886939e-03	ci left: 1.496263e-01	ci right 1.509628e-01	k: 165323	n:1100000
KS ci ratio: 1.097183e-01	ci left: 1.095484e-03	ci right 1.223530e-03	k: 1274	n:1100000
BCMO1   1100000 perm   592 sec   (1858 perm/sec)   p_kst 1.158182e-03   p_cons 1.502936e-01   p_joint 3.449091e-03

Joint ci ratio: 6.322357e-02	ci left: 3.342210e-03	ci right 3.561294e-03	k: 3830	n:1110000
Cons ci ratio: 8.845755e-03	ci left: 1.496599e-01	ci right 1.509905e-01	k: 166860	n:1110000
KS ci ratio: 1.094185e-01	ci left: 1.091748e-03	ci right 1.218986e-03	k: 1281	n:1110000
BCMO1   1110000 perm   601 sec   (1846 perm/sec)   p_kst 1.154054e-03   p_cons 1.503243e-01   p_joint 3.450450e-03

Joint ci ratio: 6.289592e-02	ci left: 3.347520e-03	ci right 3.565774e-03	k: 3870	n:1120000
Cons ci ratio: 8.805999e-03	ci left: 1.496680e-01	ci right 1.509927e-01	k: 168369	n:1120000
KS ci ratio: 1.086999e-01	ci left: 1.096765e-03	ci right 1.223695e-03	k: 1298	n:1120000
BCMO1   1120000 perm   611 sec   (1834 perm/sec)   p_kst 1.158929e-03   p_cons 1.503295e-01   p_joint 3.455357e-03

Joint ci ratio: 6.250919e-02	ci left: 3.359709e-03	ci right 3.577362e-03	k: 3918	n:1130000
Cons ci ratio: 8.766775e-03	ci left: 1.496760e-01	ci right 1.509948e-01	k: 169878	n:1130000
KS ci ratio: 1.081600e-01	ci left: 1.098251e-03	ci right 1.224682e-03	k: 1311	n:1130000
BCMO1   1130000 perm   620 sec   (1823 perm/sec)   p_kst 1.160177e-03   p_cons 1.503345e-01   p_joint 3.467257e-03

Joint ci ratio: 6.223980e-02	ci left: 3.359597e-03	ci right 3.576271e-03	k: 3952	n:1140000
Cons ci ratio: 8.728880e-03	ci left: 1.496602e-01	ci right 1.509732e-01	k: 171360	n:1140000
KS ci ratio: 1.076687e-01	ci left: 1.098860e-03	ci right 1.224749e-03	k: 1323	n:1140000
BCMO1   1140000 perm   629 sec   (1811 perm/sec)   p_kst 1.160526e-03   p_cons 1.503158e-01   p_joint 3.466667e-03

Joint ci ratio: 6.204418e-02	ci left: 3.351784e-03	ci right 3.567250e-03	k: 3977	n:1150000
Cons ci ratio: 8.691235e-03	ci left: 1.496516e-01	ci right 1.509588e-01	k: 172850	n:1150000
KS ci ratio: 1.074258e-01	ci left: 1.094381e-03	ci right 1.219457e-03	k: 1329	n:1150000
BCMO1   1150000 perm   639 sec   (1799 perm/sec)   p_kst 1.155652e-03   p_cons 1.503043e-01   p_joint 3.458261e-03

Joint ci ratio: 6.170362e-02	ci left: 3.360234e-03	ci right 3.575016e-03	k: 4021	n:1160000
Cons ci ratio: 8.653547e-03	ci left: 1.496587e-01	ci right 1.509603e-01	k: 174358	n:1160000
KS ci ratio: 1.065478e-01	ci left: 1.103405e-03	ci right 1.228417e-03	k: 1351	n:1160000
BCMO1   1160000 perm   649 sec   (1787 perm/sec)   p_kst 1.164655e-03   p_cons 1.503086e-01   p_joint 3.466379e-03

Joint ci ratio: 6.142168e-02	ci left: 3.362651e-03	ci right 3.576570e-03	k: 4058	n:1170000
Cons ci ratio: 8.615855e-03	ci left: 1.496802e-01	ci right 1.509762e-01	k: 175883	n:1170000
KS ci ratio: 1.058452e-01	ci left: 1.108951e-03	ci right 1.233711e-03	k: 1369	n:1170000
BCMO1   1170000 perm   659 sec   (1776 perm/sec)   p_kst 1.170085e-03   p_cons 1.503274e-01   p_joint 3.468376e-03

Joint ci ratio: 6.109869e-02	ci left: 3.370037e-03	ci right 3.583259e-03	k: 4101	n:1180000
Cons ci ratio: 8.579562e-03	ci left: 1.496743e-01	ci right 1.509648e-01	k: 177376	n:1180000
KS ci ratio: 1.051943e-01	ci left: 1.113579e-03	ci right 1.238042e-03	k: 1386	n:1180000
BCMO1   1180000 perm   668 sec   (1765 perm/sec)   p_kst 1.174576e-03   p_cons 1.503186e-01   p_joint 3.475424e-03

Joint ci ratio: 6.083230e-02	ci left: 3.371509e-03	ci right 3.583861e-03	k: 4137	n:1190000
Cons ci ratio: 8.541785e-03	ci left: 1.497263e-01	ci right 1.510115e-01	k: 178938	n:1190000
KS ci ratio: 1.046673e-01	ci left: 1.115678e-03	ci right 1.239712e-03	k: 1400	n:1190000
BCMO1   1190000 perm   678 sec   (1755 perm/sec)   p_kst 1.176471e-03   p_cons 1.503681e-01   p_joint 3.476471e-03

Joint ci ratio: 6.053300e-02	ci left: 3.377061e-03	ci right 3.588680e-03	k: 4178	n:1200000
Cons ci ratio: 8.505806e-03	ci left: 1.497384e-01	ci right 1.510183e-01	k: 180453	n:1200000
KS ci ratio: 1.042588e-01	ci left: 1.115307e-03	ci right 1.238787e-03	k: 1411	n:1200000
BCMO1   1200000 perm   688 sec   (1744 perm/sec)   p_kst 1.175833e-03   p_cons 1.503775e-01   p_joint 3.481667e-03

Joint ci ratio: 6.025239e-02	ci left: 3.380897e-03	ci right 3.591739e-03	k: 4217	n:1210000
Cons ci ratio: 8.471073e-03	ci left: 1.497264e-01	ci right 1.510009e-01	k: 181939	n:1210000
KS ci ratio: 1.038551e-01	ci left: 1.114944e-03	ci right 1.237877e-03	k: 1422	n:1210000
BCMO1   1210000 perm   698 sec   (1734 perm/sec)   p_kst 1.175207e-03   p_cons 1.503628e-01   p_joint 3.485124e-03

Joint ci ratio: 5.999688e-02	ci left: 3.382249e-03	ci right 3.592250e-03	k: 4253	n:1220000
Cons ci ratio: 8.435841e-03	ci left: 1.497424e-01	ci right 1.510117e-01	k: 183459	n:1220000
KS ci ratio: 1.035284e-01	ci left: 1.112991e-03	ci right 1.235298e-03	k: 1431	n:1220000
BCMO1   1220000 perm   708 sec   (1724 perm/sec)   p_kst 1.172951e-03   p_cons 1.503762e-01   p_joint 3.486066e-03

Joint ci ratio: 5.968876e-02	ci left: 3.389988e-03	ci right 3.599352e-03	k: 4297	n:1230000
Cons ci ratio: 8.400404e-03	ci left: 1.497776e-01	ci right 1.510419e-01	k: 185003	n:1230000
KS ci ratio: 1.031330e-01	ci left: 1.112654e-03	ci right 1.234429e-03	k: 1442	n:1230000
BCMO1   1230000 perm   718 sec   (1714 perm/sec)   p_kst 1.172358e-03   p_cons 1.504089e-01   p_joint 3.493496e-03

Joint ci ratio: 5.950926e-02	ci left: 3.383305e-03	ci right 3.591606e-03	k: 4323	n:1240000
Cons ci ratio: 8.366175e-03	ci left: 1.497890e-01	ci right 1.510482e-01	k: 186518	n:1240000
KS ci ratio: 1.028485e-01	ci left: 1.109967e-03	ci right 1.231092e-03	k: 1450	n:1240000
BCMO1   1240000 perm   728 sec   (1703 perm/sec)   p_kst 1.169355e-03   p_cons 1.504177e-01   p_joint 3.486290e-03

Joint ci ratio: 5.927668e-02	ci left: 3.383034e-03	ci right 3.590477e-03	k: 4357	n:1250000
Cons ci ratio: 8.331292e-03	ci left: 1.498329e-01	ci right 1.510872e-01	k: 188074	n:1250000
KS ci ratio: 1.023558e-01	ci left: 1.112000e-03	ci right 1.232731e-03	k: 1464	n:1250000
BCMO1   1250000 perm   738 sec   (1694 perm/sec)   p_kst 1.171200e-03   p_cons 1.504592e-01   p_joint 3.485600e-03

Joint ci ratio: 5.896604e-02	ci left: 3.392154e-03	ci right 3.599028e-03	k: 4403	n:1260000
Cons ci ratio: 8.297150e-03	ci left: 1.498666e-01	ci right 1.511160e-01	k: 189618	n:1260000
KS ci ratio: 1.016296e-01	ci left: 1.119416e-03	ci right 1.240039e-03	k: 1485	n:1260000
BCMO1   1260000 perm   748 sec   (1684 perm/sec)   p_kst 1.178571e-03   p_cons 1.504905e-01   p_joint 3.494444e-03

Joint ci ratio: 5.867345e-02	ci left: 3.399580e-03	ci right 3.605844e-03	k: 4447	n:1270000
Cons ci ratio: 8.264876e-03	ci left: 1.498550e-01	ci right 1.510994e-01	k: 191105	n:1270000
KS ci ratio: 1.009858e-01	ci left: 1.125183e-03	ci right 1.245614e-03	k: 1504	n:1270000
BCMO1   1270000 perm   759 sec   (1674 perm/sec)   p_kst 1.184252e-03   p_cons 1.504764e-01   p_joint 3.501575e-03

Joint ci ratio: 5.849637e-02	ci left: 3.393806e-03	ci right 3.599076e-03	k: 4474	n:1280000
Cons ci ratio: 8.231943e-03	ci left: 1.498755e-01	ci right 1.511151e-01	k: 192633	n:1280000
KS ci ratio: 1.006853e-01	ci left: 1.123247e-03	ci right 1.243091e-03	k: 1513	n:1280000
BCMO1   1280000 perm   769 sec   (1665 perm/sec)   p_kst 1.182031e-03   p_cons 1.504945e-01   p_joint 3.495313e-03

Joint ci ratio: 5.821068e-02	ci left: 3.401108e-03	ci right 3.605782e-03	k: 4518	n:1290000
Cons ci ratio: 8.200147e-03	ci left: 1.498725e-01	ci right 1.511073e-01	k: 194131	n:1290000
KS ci ratio: 1.000264e-01	ci left: 1.129654e-03	ci right 1.249347e-03	k: 1533	n:1290000
BCMO1   1290000 perm   780 sec   (1655 perm/sec)   p_kst 1.188372e-03   p_cons 1.504891e-01   p_joint 3.502326e-03

Joint ci ratio: 5.800574e-02	ci left: 3.399203e-03	ci right 3.603018e-03	k: 4550	n:1300000
Cons ci ratio: 8.168422e-03	ci left: 1.498788e-01	ci right 1.511089e-01	k: 195641	n:1300000
KS ci ratio: 9.954084e-02	ci left: 1.132215e-03	ci right 1.251563e-03	k: 1548	n:1300000
BCMO1   1300000 perm   790 sec   (1645 perm/sec)   p_kst 1.190769e-03   p_cons 1.504931e-01   p_joint 3.500000e-03

Outputting figure to mutsig2_images.part000000000016/BCMO1.2_1688_1300000_0.0011908_0.15049_0.0035.png
                gene_name: BCMO1
               theta_stop: 0.100 
                    nperm: 1300000 
                     p_ks: 0.0012 
        ci_ks_bounds_left: 0.0011 
       ci_ks_bounds_right: 0.0013 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.0035 
     ci_joint_bounds_left: 0.0034 
    ci_joint_bounds_right: 0.0036 

Current progress: 67 percent done.
BMP2K
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.133354e-02	ci left: 7.631424e-01	ci right 7.796992e-01	k: 7715	n:10000
Cons ci ratio: 1.966194e-02	ci left: 7.910089e-01	ci right 8.068166e-01	k: 7990	n:10000
KS ci ratio: 8.528745e-02	ci left: 1.669102e-01	ci right 1.818800e-01	k: 1743	n:10000
BMP2K   10000 perm   2 sec   (6222 perm/sec)   p_kst 1.743000e-01   p_cons 7.990000e-01   p_joint 7.715000e-01

Outputting figure to mutsig2_images.part000000000016/BMP2K.2_3588_10000_0.1743_0.799_0.7715.png
                gene_name: BMP2K
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000016
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 16 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1543>
Subject: Job 9876954: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1543>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000017> was used as the working directory.
Started at Fri Oct  5 22:26:31 2012
Results reported at Fri Oct  5 22:29:21 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000017.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000017.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 17  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000017.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    169.10 sec.
    Max Memory :      2276 MB
    Max Swap   :      4636 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
17
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 17
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 17: processing genes 1452 - 1541
Calculating significance of each gene.
Using projection method.
1452	BMP7	1
1453	BMP8A	1
1454	BMP8B	1
1455	BMPER	1
1456	BMPR1A	1
1457	BMPR1B	1
1458	BMPR2	1
1459	BMS1	1.632223e-01
1460	BMX	1
1461	BNC1	1
1462	BNC2	1
1463	BNIP1	1
1464	BNIP2	1
1465	BNIP3	1
1466	BNIP3L	1
1467	BNIPL	1
1468	BOC	1
1469	BOD1	1
1470	BOD1L	2.080219e-01
1471	BOK	1
1472	BOLA1	1
1473	BOLA3	1
1474	BOLL	1
1475	BPGM	1
1476	BPHL	1
1477	BPI	1
1478	BPIL1	1
1479	BPIL2	1
1480	BPIL3	1
1481	BPNT1	1
1482	BPTF	1
1483	BRAF	1.164369e-01
1484	BRAP	1
1485	BRCA1	1
1486	BRCA2	8.087033e-02
1487	BRCC3	1
1488	BRD1	1.499278e-01
1489	BRD2	1
1490	BRD3	1.146521e-01
1491	BRD4	1
1492	BRD7	1.467500e-01
1493	BRD8	1
1494	BRD9	5.019438e-02
1495	BRDT	3.492997e-02
1496	BRE	4.369874e-02
1497	BRF1	1
1498	BRF2	1
1499	BRI3	1
1500	BRI3BP	1
1501	BRIP1	1
1502	BRIX1	1
1503	BRMS1	1
1504	BRMS1L	9.019798e-02
1505	BRP44	1
1506	BRP44L	1
1507	BRPF1	1.504543e-01
1508	BRPF3	1
1509	BRS3	1
1510	BRSK1	1
1511	BRSK2	1
1512	BRWD1	1
1513	BRWD3	1
1514	BSCL2	1.594941e-01
1515	BSDC1	1
1516	BSG	1
1517	BSN	3.083511e-01
1518	BSND	1
1519	BSPRY	1
1520	BST1	1
1521	BST2	1
1522	BSX	1
1523	BTAF1	1
1524	BTBD1	1
1525	BTBD10	5.407177e-02
1526	BTBD11	7.750231e-02
1527	BTBD12	8.141802e-02
1528	BTBD16	1
1529	BTBD17	1
1530	BTBD2	1
1531	BTBD3	1
1532	BTBD6	1
1533	BTBD7	2.446212e-01
1534	BTBD8	1
1535	BTBD9	3.903854e-02
1536	BTC	1
1537	BTD	1
1538	BTF3	1
1539	BTF3L4	1
1540	BTG1	1
1541	BTG2	1
Done

Running MutSig 2:
Scatter job 17: processing genes 1452 - 1541
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
BRCA2
Processing conservation and coverage...
96% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.820443e-02	ci left: 2.397579e-01	ci right 2.567890e-01	k: 2482	n:10000
Cons ci ratio: 4.185486e-02	ci left: 4.573820e-01	ci right 4.770371e-01	k: 4672	n:10000
KS ci ratio: 7.755077e-02	ci left: 1.955478e-01	ci right 2.114253e-01	k: 2034	n:10000
BRCA2   10000 perm   3 sec   (2885 perm/sec)   p_kst 2.034000e-01   p_cons 4.672000e-01   p_joint 2.482000e-01

Outputting figure to mutsig2_images.part000000000017/BRCA2.3_10361_10000_0.2034_0.4672_0.2482.png
                gene_name: BRCA2
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 20 percent done.
BOD1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.754707e-02	ci left: 8.256448e-01	ci right 8.403607e-01	k: 8331	n:10000
KS ci ratio: 2.406300e-02	ci left: 7.174463e-01	ci right 7.350217e-01	k: 7263	n:10000
BOD1L   10000 perm   3 sec   (3253 perm/sec)   p_kst 7.263000e-01   p_cons 8.331000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000017/BOD1L.2_9260_10000_0.7263_0.8331_1.png
                gene_name: BOD1L
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
BRDT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.788368e-02	ci left: 5.071521e-01	ci right 5.268380e-01	k: 5170	n:10000
KS ci ratio: 3.617512e-02	ci left: 5.301711e-01	ci right 5.498056e-01	k: 5400	n:10000
BRDT   10000 perm   2 sec   (4889 perm/sec)   p_kst 5.400000e-01   p_cons 5.170000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000017/BRDT.2_2916_10000_0.54_0.517_1.png
                gene_name: BRDT
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
BSN
Processing conservation and coverage...
84% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.149215e-02	ci left: 1.801871e-01	ci right 1.955952e-01	k: 1878	n:10000
Cons ci ratio: 7.959375e-02	ci left: 1.873727e-01	ci right 2.030052e-01	k: 1951	n:10000
KS ci ratio: 1.252558e-01	ci left: 8.358655e-02	ci right 9.485408e-02	k: 891	n:10000
BSN   10000 perm   4 sec   (2712 perm/sec)   p_kst 8.910000e-02   p_cons 1.951000e-01   p_joint 1.878000e-01

Joint ci ratio: 5.858627e-02	ci left: 1.775143e-01	ci right 1.882781e-01	k: 3657	n:20000
Cons ci ratio: 5.952428e-02	ci left: 1.728691e-01	ci right 1.835247e-01	k: 3563	n:20000
KS ci ratio: 8.827251e-02	ci left: 8.577461e-02	ci right 9.374513e-02	k: 1794	n:20000
BSN   20000 perm   8 sec   (2549 perm/sec)   p_kst 8.970000e-02   p_cons 1.781500e-01   p_joint 1.828500e-01

Outputting figure to mutsig2_images.part000000000017/BSN.2_11821_20000_0.0897_0.17815_0.18285.png
                gene_name: BSN
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.090 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.094 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 80 percent done.
BTBD12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.604756e-02	ci left: 8.494749e-01	ci right 8.633167e-01	k: 8565	n:10000
KS ci ratio: 2.097639e-02	ci left: 7.691165e-01	ci right 7.855216e-01	k: 7774	n:10000
BTBD12   10000 perm   2 sec   (4311 perm/sec)   p_kst 7.774000e-01   p_cons 8.565000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000017/BTBD12.2_5561_10000_0.7774_0.8565_1.png
                gene_name: BTBD12
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000017
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 17 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1701>
Subject: Job 9876957: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1701>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000018> was used as the working directory.
Started at Fri Oct  5 22:26:50 2012
Results reported at Fri Oct  5 22:28:14 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000018.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000018.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 18  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000018.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     86.09 sec.
    Max Memory :      1748 MB
    Max Swap   :      4542 MB

    Max Processes  :         7
    Max Threads    :        55

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
18
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 18
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 18: processing genes 1542 - 1632
Calculating significance of each gene.
Using projection method.
1542	BTG3	1
1543	BTG4	1
1544	BTK	1.991166e-01
1545	BTLA	1
1546	BTN1A1	1
1547	BTN2A1	1
1548	BTN2A2	1
1549	BTN3A1	1
1550	BTN3A2	1
1551	BTN3A3	1
1552	BTNL2	1
1553	BTNL3	9.369045e-02
1554	BTNL8	1.709131e-02
1555	BTNL9	1
1556	BTRC	1
1557	BUB1	1
1558	BUB1B	1
1559	BUB3	1
1560	BUD13	1
1561	BUD31	1
1562	BVES	1
1563	BYSL	1
1564	BZRAP1	3.657880e-01
1565	BZW1	1
1566	BZW2	1
1567	C10orf10	1
1568	C10orf107	1
1569	C10orf11	1
1570	C10orf111	1
1571	C10orf113	1
1572	C10orf114	1
1573	C10orf116	1
1574	C10orf118	1
1575	C10orf119	1
1576	C10orf12	1
1577	C10orf120	1
1578	C10orf125	1
1579	C10orf128	1
1580	C10orf129	4.745116e-02
1581	C10orf137	1
1582	C10orf140	1
1583	C10orf18	1
1584	C10orf2	1
1585	C10orf25	1
1586	C10orf26	1
1587	C10orf27	1
1588	C10orf28	1
1589	C10orf32	1
1590	C10orf35	1
1591	C10orf46	1
1592	C10orf47	1.115726e-02
1593	C10orf53	1
1594	C10orf54	1
1595	C10orf55	1
1596	C10orf57	1
1597	C10orf58	1
1598	C10orf62	1
1599	C10orf67	1
1600	C10orf68	1
1601	C10orf71	6.710904e-02
1602	C10orf72	1
1603	C10orf76	1
1604	C10orf78	1
1605	C10orf79	1.881727e-01
1606	C10orf81	1
1607	C10orf82	1
1608	C10orf84	1
1609	C10orf88	1
1610	C10orf90	1
1611	C10orf91	1
1612	C10orf93	1
1613	C10orf95	1
1614	C10orf96	1
1615	C10orf99	2.565673e-02
1616	C11orf1	1
1617	C11orf10	1
1618	C11orf16	1
1619	C11orf17	1
1620	C11orf2	1
1621	C11orf24	1
1622	C11orf30	1
1623	C11orf31	1
1624	C11orf35	1
1625	C11orf40	1
1626	C11orf41	1
1627	C11orf42	1
1628	C11orf45	1
1629	C11orf46	1
1630	C11orf48	1
1631	C11orf49	1
1632	C11orf51	1
Done

Running MutSig 2:
Scatter job 18: processing genes 1542 - 1632
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000018
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 18 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1431>
Subject: Job 9876959: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1431>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000019> was used as the working directory.
Started at Fri Oct  5 22:27:05 2012
Results reported at Fri Oct  5 22:30:14 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000019.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000019.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 19  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000019.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    145.85 sec.
    Max Memory :      1697 MB
    Max Swap   :      4476 MB

    Max Processes  :         7
    Max Threads    :        55

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
19
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 19
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 19: processing genes 1633 - 1723
Calculating significance of each gene.
Using projection method.
1633	C11orf52	1
1634	C11orf53	1
1635	C11orf54	1
1636	C11orf57	1
1637	C11orf58	1
1638	C11orf59	1
1639	C11orf61	1
1640	C11orf63	1
1641	C11orf65	1
1642	C11orf66	1
1643	C11orf67	1
1644	C11orf68	1
1645	C11orf70	2.670402e-02
1646	C11orf71	1
1647	C11orf73	1
1648	C11orf74	1
1649	C11orf75	1
1650	C11orf80	1
1651	C11orf82	1
1652	C11orf83	2.841399e-02
1653	C11orf84	1
1654	C11orf85	1
1655	C11orf87	1
1656	C11orf88	1
1657	C11orf9	2.308111e-01
1658	C11orf92	1
1659	C11orf94	1
1660	C12orf10	1.454556e-01
1661	C12orf11	1
1662	C12orf12	1
1663	C12orf23	1
1664	C12orf24	1
1665	C12orf26	1.044673e-01
1666	C12orf29	1
1667	C12orf34	1
1668	C12orf35	1.977727e-01
1669	C12orf36	1
1670	C12orf39	1
1671	C12orf4	1
1672	C12orf40	1
1673	C12orf41	1
1674	C12orf42	1
1675	C12orf43	1
1676	C12orf44	1
1677	C12orf45	1
1678	C12orf48	1
1679	C12orf49	1
1680	C12orf5	1
1681	C12orf50	1
1682	C12orf51	5.704474e-01
1683	C12orf52	5.084017e-02
1684	C12orf53	1
1685	C12orf54	1
1686	C12orf56	1
1687	C12orf57	1
1688	C12orf59	1
1689	C12orf60	1
1690	C12orf61	1
1691	C12orf62	1
In gene C12orf63 the following bins exceed PROBCAP:
    PRAD-EJ-5499	categ 6	N = 3698    n = 1	mu =   9.97e-08
    PRAD-EJ-5519	categ 6	N = 3698    n = 1	mu =   6.75e-07
1692	C12orf63	1.394383e-03
1693	C12orf64	1
1694	C12orf65	1
1695	C12orf66	1
1696	C12orf68	1
1697	C12orf69	1
1698	C12orf71	1
1699	C12orf72	1
1700	C12orf74	1
1701	C12orf76	1
1702	C12orf77	1
1703	C13orf1	1
1704	C13orf15	1
1705	C13orf16	1
1706	C13orf18	1
1707	C13orf23	1
1708	C13orf26	1
1709	C13orf27	1
1710	C13orf28	1
1711	C13orf30	1
1712	C13orf31	1
1713	C13orf33	1
1714	C13orf34	1
1715	C13orf35	1
1716	C13orf36	1
1717	C13orf37	1
1718	C13orf39	1
1719	C14orf1	1
1720	C14orf101	5.057520e-02
1721	C14orf102	1
1722	C14orf104	1
1723	C14orf105	1
Done

Running MutSig 2:
Scatter job 19: processing genes 1633 - 1723
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
C12orf63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.121321e-02	ci left: 4.650710e-01	ci right 4.847436e-01	k: 4749	n:10000
Cons ci ratio: 1.014468e-02	ci left: 9.323699e-01	ci right 9.419735e-01	k: 9373	n:10000
KS ci ratio: 9.219358e-02	ci left: 1.459962e-01	ci right 1.602065e-01	k: 1530	n:10000
C12orf63   10000 perm   4 sec   (2789 perm/sec)   p_kst 1.530000e-01   p_cons 9.373000e-01   p_joint 4.749000e-01

Outputting figure to mutsig2_images.part000000000019/C12orf63.3_3698_10000_0.153_0.9373_0.4749.png
                gene_name: C12orf63
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.48 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000019
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 19 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1705>
Subject: Job 9876960: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1705>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000020> was used as the working directory.
Started at Fri Oct  5 22:27:05 2012
Results reported at Fri Oct  5 22:28:41 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000020.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000020.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 20  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000020.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     86.70 sec.
    Max Memory :      1934 MB
    Max Swap   :      4591 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
20
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 20
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 20: processing genes 1724 - 1813
Calculating significance of each gene.
Using projection method.
1724	C14orf106	1.035344e-01
1725	C14orf109	1
1726	C14orf115	1
1727	C14orf118	1
1728	C14orf119	1
1729	C14orf126	1
1730	C14orf129	1.558692e-02
1731	C14orf135	1.118376e-01
1732	C14orf138	1
1733	C14orf142	1
1734	C14orf143	1
1735	C14orf145	1
1736	C14orf147	1
1737	C14orf148	1
1738	C14orf149	6.018696e-02
1739	C14orf153	1
1740	C14orf156	1
1741	C14orf159	1
1742	C14orf166	1
1743	C14orf166B	1.360109e-02
1744	C14orf169	1
1745	C14orf174	1
1746	C14orf177	1
1747	C14orf178	2.219262e-02
1748	C14orf179	1
1749	C14orf180	1
1750	C14orf181	1
1751	C14orf182	1
1752	C14orf183	1
1753	C14orf184	1
1754	C14orf2	1
1755	C14orf21	1.607715e-01
1756	C14orf28	1
1757	C14orf37	1
1758	C14orf39	1
1759	C14orf4	1
1760	C14orf43	1
1761	C14orf45	1
1762	C14orf49	1
1763	C14orf50	1
1764	C14orf68	1
1765	C14orf73	1
1766	C14orf79	1
1767	C14orf80	1
1768	C14orf93	1
1769	C15orf17	1
1770	C15orf2	1
1771	C15orf23	1
1772	C15orf24	1
1773	C15orf26	1
1774	C15orf27	1
1775	C15orf29	1
1776	C15orf32	1
1777	C15orf33	1
1778	C15orf38	1
1779	C15orf39	1
1780	C15orf40	1
1781	C15orf41	1
1782	C15orf42	1
1783	C15orf43	1
1784	C15orf44	1.715632e-01
1785	C15orf48	1
1786	C15orf52	1
1787	C15orf53	1
1788	C15orf54	1
1789	C15orf55	1
1790	C15orf56	1
1791	C15orf57	1
1792	C15orf58	1
1793	C15orf59	1
1794	C15orf60	1
1795	C15orf63	1
1796	C16orf11	1
1797	C16orf13	3.048272e-03
1798	C16orf3	1.102974e-02
1799	C16orf42	1
1800	C16orf45	1
1801	C16orf46	8.363552e-02
1802	C16orf48	1
1803	C16orf5	1
1804	C16orf53	1
1805	C16orf54	9.361287e-03
1806	C16orf55	1
1807	C16orf57	1
1808	C16orf58	1
1809	C16orf59	1
1810	C16orf61	1
1811	C16orf62	9.774673e-02
1812	C16orf63	1
1813	C16orf68	1
Done

Running MutSig 2:
Scatter job 20: processing genes 1724 - 1813
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
C14orf166B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.507648e-03	ci left: 9.608952e-01	ci right 9.682310e-01	k: 9647	n:10000
Cons ci ratio: 1.340175e-02	ci left: 8.892362e-01	ci right 9.013324e-01	k: 8954	n:10000
KS ci ratio: 5.574205e-02	ci left: 3.215787e-01	ci right 3.401199e-01	k: 3308	n:10000
C14orf166B   10000 perm   2 sec   (5736 perm/sec)   p_kst 3.308000e-01   p_cons 8.954000e-01   p_joint 9.647000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf166B.2_1523_10000_0.3308_0.8954_0.9647.png
                gene_name: C14orf166B
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000020
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 20 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1727>
Subject: Job 9876963: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1727>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000021> was used as the working directory.
Started at Fri Oct  5 22:27:05 2012
Results reported at Fri Oct  5 22:27:59 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000021.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000021.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 21  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000021.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     47.78 sec.
    Max Memory :       878 MB
    Max Swap   :      3664 MB

    Max Processes  :         7
    Max Threads    :        67

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
21
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 21
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 21: processing genes 1814 - 1904
Calculating significance of each gene.
Using projection method.
1814	C16orf7	1
1815	C16orf70	1
1816	C16orf71	1
1817	C16orf72	1
1818	C16orf73	1
1819	C16orf75	1
1820	C16orf78	1
1821	C16orf79	1
1822	C16orf80	1
1823	C16orf82	1
1824	C16orf86	1
1825	C16orf87	1
1826	C16orf88	1
1827	C16orf89	1
1828	C16orf90	1
1829	C16orf91	1
1830	C16orf92	1
1831	C16orf93	1
1832	C17orf100	1
1833	C17orf101	1
1834	C17orf102	1
1835	C17orf103	1
1836	C17orf104	1
1837	C17orf108	1
1838	C17orf28	8.021560e-02
1839	C17orf37	1
1840	C17orf39	1
1841	C17orf42	1
1842	C17orf46	1
1843	C17orf47	1
1844	C17orf48	1
1845	C17orf49	1
1846	C17orf50	1
1847	C17orf53	1
1848	C17orf55	1
1849	C17orf56	1
1850	C17orf57	1
1851	C17orf58	1
1852	C17orf59	1
1853	C17orf60	1
1854	C17orf61	1
1855	C17orf62	1
1856	C17orf63	2.711640e-05
1857	C17orf64	1
1858	C17orf65	1
1859	C17orf66	1
1860	C17orf67	1
1861	C17orf68	1
1862	C17orf70	6.911984e-02
1863	C17orf71	1
1864	C17orf74	1
1865	C17orf75	1
1866	C17orf76	1
1867	C17orf77	3.325135e-02
1868	C17orf78	1
1869	C17orf79	1
1870	C17orf80	1
1871	C17orf81	1
1872	C17orf82	1
1873	C17orf85	1
1874	C17orf87	1
1875	C17orf90	1
1876	C17orf95	1
1877	C17orf98	1
1878	C18orf1	1
1879	C18orf10	1
1880	C18orf19	1
1881	C18orf21	1
1882	C18orf22	1
1883	C18orf25	1
1884	C18orf26	1
1885	C18orf32	1
1886	C18orf34	9.298758e-02
1887	C18orf45	1
1888	C18orf54	1
1889	C18orf55	1
1890	C18orf62	1
1891	C18orf8	1
1892	C19orf10	1
1893	C19orf12	1
1894	C19orf18	1
1895	C19orf2	3.155389e-02
1896	C19orf21	1.607759e-01
1897	C19orf22	1
1898	C19orf25	1
1899	C19orf26	1
1900	C19orf28	1
1901	C19orf29	1
1902	C19orf33	1
1903	C19orf35	1
1904	C19orf36	1
Done

Running MutSig 2:
Scatter job 21: processing genes 1814 - 1904
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
C17orf63
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000021
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 21 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1642>
Subject: Job 9876966: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1642>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000022> was used as the working directory.
Started at Fri Oct  5 22:27:33 2012
Results reported at Fri Oct  5 22:34:32 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000022.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000022.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 22  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000022.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    471.93 sec.
    Max Memory :      1960 MB
    Max Swap   :      4861 MB

    Max Processes  :         7
    Max Threads    :        94

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
22
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 22
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 22: processing genes 1905 - 1995
Calculating significance of each gene.
Using projection method.
1905	C19orf39	1
1906	C19orf40	1
1907	C19orf41	4.319651e-02
1908	C19orf42	1
1909	C19orf43	1
1910	C19orf44	1
1911	C19orf45	1
1912	C19orf46	1
1913	C19orf47	3.802634e-02
1914	C19orf48	1
1915	C19orf50	1
1916	C19orf51	1
1917	C19orf52	1
1918	C19orf53	1.312868e-02
1919	C19orf54	1
1920	C19orf55	1
1921	C19orf56	1
1922	C19orf57	8.625595e-02
1923	C19orf59	1
1924	C19orf6	1
1925	C19orf60	1
1926	C19orf61	1
1927	C19orf62	1
1928	C19orf63	1
1929	C19orf66	1
1930	C19orf70	1
1931	C19orf73	1
1932	C19orf75	1.682449e-02
1933	C1D	1
1934	C1GALT1	1
1935	C1GALT1C1	1
1936	C1QA	1
1937	C1QB	1
1938	C1QBP	1
1939	C1QC	1
1940	C1QL1	8.370840e-02
1941	C1QL2	3.681658e-02
1942	C1QL3	2.207700e-02
1943	C1QL4	1
1944	C1QTNF1	1
1945	C1QTNF2	1
1946	C1QTNF3	1
1947	C1QTNF4	1
1948	C1QTNF5	1
1949	C1QTNF6	1
1950	C1QTNF7	2.243641e-02
1951	C1QTNF8	1
1952	C1QTNF9	1
1953	C1QTNF9B	1
1954	C1R	1
1955	C1RL	1
1956	C1S	1
1957	C1orf100	1
1958	C1orf101	1.425291e-01
1959	C1orf103	1
1960	C1orf104	1
1961	C1orf105	1
1962	C1orf106	1
1963	C1orf107	1
1964	C1orf109	1.843250e-02
1965	C1orf110	4.828026e-02
1966	C1orf111	1
1967	C1orf112	1
1968	C1orf113	1
1969	C1orf114	1
1970	C1orf115	1
1971	C1orf116	1.758990e-02
1972	C1orf122	1
1973	C1orf123	1
1974	C1orf124	1
1975	C1orf125	1
1976	C1orf127	1
1977	C1orf128	1
1978	C1orf129	1
1979	C1orf130	1
1980	C1orf131	1
1981	C1orf135	1
1982	C1orf14	1
1983	C1orf141	1
1984	C1orf144	1
1985	C1orf146	1
1986	C1orf150	1
1987	C1orf151	1
1988	C1orf156	1
1989	C1orf158	1
1990	C1orf159	1
1991	C1orf161	1
1992	C1orf162	1
1993	C1orf163	5.750319e-02
1994	C1orf168	1
1995	C1orf172	1
Done

Running MutSig 2:
Scatter job 22: processing genes 1905 - 1995
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
C1orf116
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.991661e-01	ci left: 1.458544e-03	ci right 3.449143e-03	k: 23	n:10000
Cons ci ratio: 9.498839e-01	ci left: 9.148061e-04	ci right 2.597003e-03	k: 16	n:10000
KS ci ratio: 5.702521e-02	ci left: 3.116545e-01	ci right 3.300500e-01	k: 3208	n:10000
C1orf116   10000 perm   2 sec   (6093 perm/sec)   p_kst 3.208000e-01   p_cons 1.600000e-03   p_joint 2.300000e-03

Joint ci ratio: 5.711043e-01	ci left: 1.684366e-03	ci right 3.066699e-03	k: 46	n:20000
Cons ci ratio: 6.818042e-01	ci left: 1.094648e-03	ci right 2.257979e-03	k: 32	n:20000
KS ci ratio: 4.003792e-02	ci left: 3.174652e-01	ci right 3.304860e-01	k: 6479	n:20000
C1orf116   20000 perm   6 sec   (3548 perm/sec)   p_kst 3.239500e-01   p_cons 1.600000e-03   p_joint 2.300000e-03

Joint ci ratio: 5.142149e-01	ci left: 1.439349e-03	ci right 2.460979e-03	k: 57	n:30000
Cons ci ratio: 5.379686e-01	ci left: 1.294799e-03	ci right 2.272423e-03	k: 52	n:30000
KS ci ratio: 3.274813e-02	ci left: 3.179083e-01	ci right 3.285260e-01	k: 9696	n:30000
C1orf116   30000 perm   8 sec   (3870 perm/sec)   p_kst 3.232000e-01   p_cons 1.733333e-03   p_joint 1.900000e-03

Joint ci ratio: 3.368059e-01	ci left: 2.807559e-03	ci right 3.966389e-03	k: 134	n:40000
Cons ci ratio: 4.714995e-01	ci left: 1.320351e-03	ci right 2.154664e-03	k: 68	n:40000
KS ci ratio: 2.829818e-02	ci left: 3.195884e-01	ci right 3.287871e-01	k: 12967	n:40000
C1orf116   40000 perm   10 sec   (4029 perm/sec)   p_kst 3.241750e-01   p_cons 1.700000e-03   p_joint 3.350000e-03

Joint ci ratio: 3.174672e-01	ci left: 2.558091e-03	ci right 3.541012e-03	k: 151	n:50000
Cons ci ratio: 4.248179e-01	ci left: 1.340248e-03	ci right 2.079538e-03	k: 84	n:50000
KS ci ratio: 2.532453e-02	ci left: 3.198384e-01	ci right 3.280621e-01	k: 16197	n:50000
C1orf116   50000 perm   12 sec   (4006 perm/sec)   p_kst 3.239400e-01   p_cons 1.680000e-03   p_joint 3.020000e-03

Joint ci ratio: 3.207373e-01	ci left: 2.085661e-03	ci right 2.896993e-03	k: 148	n:60000
Cons ci ratio: 3.956530e-01	ci left: 1.311197e-03	ci right 1.971846e-03	k: 97	n:60000
KS ci ratio: 2.317321e-02	ci left: 3.191589e-01	ci right 3.266582e-01	k: 19374	n:60000
C1orf116   60000 perm   15 sec   (4060 perm/sec)   p_kst 3.229000e-01   p_cons 1.616667e-03   p_joint 2.466667e-03

Joint ci ratio: 2.754100e-01	ci left: 2.488626e-03	ci right 3.296313e-03	k: 201	n:70000
Cons ci ratio: 3.717722e-01	ci left: 1.291695e-03	ci right 1.893691e-03	k: 110	n:70000
KS ci ratio: 2.144383e-02	ci left: 3.196501e-01	ci right 3.265932e-01	k: 22618	n:70000
C1orf116   70000 perm   17 sec   (4081 perm/sec)   p_kst 3.231143e-01   p_cons 1.571429e-03   p_joint 2.871429e-03

Joint ci ratio: 2.645246e-01	ci left: 2.375650e-03	ci right 3.111149e-03	k: 218	n:80000
Cons ci ratio: 3.475654e-01	ci left: 1.312181e-03	ci right 1.874957e-03	k: 126	n:80000
KS ci ratio: 2.005444e-02	ci left: 3.199718e-01	ci right 3.264661e-01	k: 25857	n:80000
C1orf116   80000 perm   20 sec   (4082 perm/sec)   p_kst 3.232125e-01   p_cons 1.575000e-03   p_joint 2.725000e-03

Joint ci ratio: 2.604255e-01	ci left: 2.184320e-03	ci right 2.848393e-03	k: 225	n:90000
Cons ci ratio: 3.358813e-01	ci left: 1.257798e-03	ci right 1.775187e-03	k: 135	n:90000
KS ci ratio: 1.890139e-02	ci left: 3.202998e-01	ci right 3.264227e-01	k: 29102	n:90000
C1orf116   90000 perm   22 sec   (4072 perm/sec)   p_kst 3.233556e-01   p_cons 1.500000e-03   p_joint 2.500000e-03

Joint ci ratio: 3.310668e-01	ci left: 1.168660e-03	ci right 1.641021e-03	k: 139	n:100000
Cons ci ratio: 3.116104e-01	ci left: 1.334172e-03	ci right 1.835450e-03	k: 157	n:100000
KS ci ratio: 1.789285e-02	ci left: 3.213988e-01	ci right 3.272114e-01	k: 32430	n:100000
C1orf116   100000 perm   25 sec   (4047 perm/sec)   p_kst 3.243000e-01   p_cons 1.570000e-03   p_joint 1.390000e-03

Joint ci ratio: 2.314919e-01	ci left: 2.299135e-03	ci right 2.909379e-03	k: 285	n:110000
Cons ci ratio: 2.935773e-01	ci left: 1.380916e-03	ci right 1.864154e-03	k: 177	n:110000
KS ci ratio: 1.706693e-02	ci left: 3.213615e-01	ci right 3.269024e-01	k: 35654	n:110000
C1orf116   110000 perm   27 sec   (4014 perm/sec)   p_kst 3.241273e-01   p_cons 1.609091e-03   p_joint 2.590909e-03

Joint ci ratio: 3.031263e-01	ci left: 1.181012e-03	ci right 1.610332e-03	k: 166	n:120000
Cons ci ratio: 2.841603e-01	ci left: 1.358593e-03	ci right 1.816036e-03	k: 189	n:120000
KS ci ratio: 1.633890e-02	ci left: 3.215185e-01	ci right 3.268233e-01	k: 38900	n:120000
C1orf116   120000 perm   30 sec   (3978 perm/sec)   p_kst 3.241667e-01   p_cons 1.575000e-03   p_joint 1.383333e-03

Joint ci ratio: 2.944435e-01	ci left: 1.161322e-03	ci right 1.569135e-03	k: 176	n:130000
Cons ci ratio: 2.755948e-01	ci left: 1.339915e-03	ci right 1.775112e-03	k: 201	n:130000
KS ci ratio: 1.569453e-02	ci left: 3.217171e-01	ci right 3.268138e-01	k: 42154	n:130000
C1orf116   130000 perm   33 sec   (3939 perm/sec)   p_kst 3.242615e-01   p_cons 1.546154e-03   p_joint 1.353846e-03

Joint ci ratio: 2.841926e-01	ci left: 1.164491e-03	ci right 1.556629e-03	k: 189	n:140000
Cons ci ratio: 2.652882e-01	ci left: 1.350747e-03	ci right 1.770331e-03	k: 217	n:140000
KS ci ratio: 1.511074e-02	ci left: 3.221831e-01	ci right 3.270956e-01	k: 45449	n:140000
C1orf116   140000 perm   36 sec   (3895 perm/sec)   p_kst 3.246357e-01   p_cons 1.550000e-03   p_joint 1.350000e-03

Joint ci ratio: 1.992652e-01	ci left: 2.316939e-03	ci right 2.835920e-03	k: 385	n:150000
Cons ci ratio: 2.560576e-01	ci left: 1.360397e-03	ci right 1.765927e-03	k: 233	n:150000
KS ci ratio: 1.459003e-02	ci left: 3.225167e-01	ci right 3.272634e-01	k: 48733	n:150000
C1orf116   150000 perm   39 sec   (3851 perm/sec)   p_kst 3.248867e-01   p_cons 1.553333e-03   p_joint 2.566667e-03

Joint ci ratio: 1.861971e-01	ci left: 2.505282e-03	ci right 3.025496e-03	k: 441	n:160000
Cons ci ratio: 2.182325e-01	ci left: 1.792941e-03	ci right 2.237913e-03	k: 321	n:160000
KS ci ratio: 1.412310e-02	ci left: 3.227051e-01	ci right 3.273013e-01	k: 52000	n:160000
C1orf116   160000 perm   42 sec   (3809 perm/sec)   p_kst 3.250000e-01   p_cons 2.006250e-03   p_joint 2.756250e-03

Joint ci ratio: 1.667263e-01	ci left: 2.970909e-03	ci right 3.516837e-03	k: 550	n:170000
Cons ci ratio: 2.102211e-01	ci left: 1.826649e-03	ci right 2.261202e-03	k: 346	n:170000
KS ci ratio: 1.369794e-02	ci left: 3.228852e-01	ci right 3.273443e-01	k: 55269	n:170000
C1orf116   170000 perm   45 sec   (3766 perm/sec)   p_kst 3.251118e-01   p_cons 2.035294e-03   p_joint 3.235294e-03

Joint ci ratio: 1.615312e-01	ci left: 2.997648e-03	ci right 3.529660e-03	k: 586	n:180000
Cons ci ratio: 2.046927e-01	ci left: 1.825241e-03	ci right 2.246611e-03	k: 365	n:180000
KS ci ratio: 1.332114e-02	ci left: 3.226478e-01	ci right 3.269801e-01	k: 58466	n:180000
C1orf116   180000 perm   48 sec   (3720 perm/sec)   p_kst 3.248111e-01   p_cons 2.027778e-03   p_joint 3.255556e-03

Joint ci ratio: 1.575564e-01	ci left: 2.991468e-03	ci right 3.508083e-03	k: 616	n:190000
Cons ci ratio: 2.006257e-01	ci left: 1.804115e-03	ci right 2.211319e-03	k: 380	n:190000
KS ci ratio: 1.297132e-02	ci left: 3.225210e-01	ci right 3.267370e-01	k: 61679	n:190000
C1orf116   190000 perm   52 sec   (3677 perm/sec)   p_kst 3.246263e-01   p_cons 2.000000e-03   p_joint 3.242105e-03

Joint ci ratio: 1.473749e-01	ci left: 3.265158e-03	ci right 3.789394e-03	k: 704	n:200000
Cons ci ratio: 1.948297e-01	ci left: 1.823218e-03	ci right 2.221436e-03	k: 403	n:200000
KS ci ratio: 1.264667e-02	ci left: 3.224432e-01	ci right 3.265519e-01	k: 64899	n:200000
C1orf116   200000 perm   55 sec   (3633 perm/sec)   p_kst 3.244950e-01   p_cons 2.015000e-03   p_joint 3.520000e-03

Joint ci ratio: 1.429777e-01	ci left: 3.311594e-03	ci right 3.826068e-03	k: 748	n:210000
Cons ci ratio: 1.890655e-01	ci left: 1.849728e-03	ci right 2.240411e-03	k: 428	n:210000
KS ci ratio: 1.234457e-02	ci left: 3.223978e-01	ci right 3.264071e-01	k: 68124	n:210000
C1orf116   210000 perm   59 sec   (3588 perm/sec)   p_kst 3.244000e-01   p_cons 2.038095e-03   p_joint 3.561905e-03

Joint ci ratio: 1.395715e-01	ci left: 3.323306e-03	ci right 3.826277e-03	k: 785	n:220000
Cons ci ratio: 1.856374e-01	ci left: 1.834965e-03	ci right 2.214711e-03	k: 444	n:220000
KS ci ratio: 1.205363e-02	ci left: 3.227025e-01	ci right 3.266203e-01	k: 71425	n:220000
C1orf116   220000 perm   62 sec   (3544 perm/sec)   p_kst 3.246591e-01   p_cons 2.018182e-03   p_joint 3.568182e-03

Joint ci ratio: 1.412142e-01	ci left: 3.103277e-03	ci right 3.578940e-03	k: 767	n:230000
Cons ci ratio: 1.819940e-01	ci left: 1.829843e-03	ci right 2.200278e-03	k: 462	n:230000
KS ci ratio: 1.179402e-02	ci left: 3.225476e-01	ci right 3.263786e-01	k: 74626	n:230000
C1orf116   230000 perm   66 sec   (3502 perm/sec)   p_kst 3.244609e-01   p_cons 2.008696e-03   p_joint 3.334783e-03

Joint ci ratio: 1.375019e-01	ci left: 3.142878e-03	ci right 3.610909e-03	k: 809	n:240000
Cons ci ratio: 1.769063e-01	ci left: 1.861050e-03	ci right 2.226143e-03	k: 489	n:240000
KS ci ratio: 1.154478e-02	ci left: 3.226228e-01	ci right 3.263731e-01	k: 77879	n:240000
C1orf116   240000 perm   69 sec   (3459 perm/sec)   p_kst 3.244958e-01   p_cons 2.037500e-03   p_joint 3.370833e-03

Joint ci ratio: 1.343846e-01	ci left: 3.163995e-03	ci right 3.623637e-03	k: 847	n:250000
Cons ci ratio: 1.737447e-01	ci left: 1.855448e-03	ci right 2.212255e-03	k: 507	n:250000
KS ci ratio: 1.131081e-02	ci left: 3.226887e-01	ci right 3.263633e-01	k: 81131	n:250000
C1orf116   250000 perm   73 sec   (3416 perm/sec)   p_kst 3.245240e-01   p_cons 2.028000e-03   p_joint 3.388000e-03

Joint ci ratio: 1.316193e-01	ci left: 3.176159e-03	ci right 3.627330e-03	k: 883	n:260000
Cons ci ratio: 1.693016e-01	ci left: 1.883475e-03	ci right 2.235465e-03	k: 534	n:260000
KS ci ratio: 1.108944e-02	ci left: 3.227926e-01	ci right 3.263959e-01	k: 84394	n:260000
C1orf116   260000 perm   77 sec   (3376 perm/sec)   p_kst 3.245923e-01   p_cons 2.053846e-03   p_joint 3.396154e-03

Joint ci ratio: 1.300144e-01	ci left: 3.137334e-03	ci right 3.577137e-03	k: 905	n:270000
Cons ci ratio: 1.656263e-01	ci left: 1.898882e-03	ci right 2.245279e-03	k: 558	n:270000
KS ci ratio: 1.088784e-02	ci left: 3.225972e-01	ci right 3.261325e-01	k: 87578	n:270000
C1orf116   270000 perm   81 sec   (3334 perm/sec)   p_kst 3.243630e-01   p_cons 2.066667e-03   p_joint 3.351852e-03

Joint ci ratio: 1.277095e-01	ci left: 3.139345e-03	ci right 3.571036e-03	k: 938	n:280000
Cons ci ratio: 1.635924e-01	ci left: 1.879003e-03	ci right 2.217151e-03	k: 572	n:280000
KS ci ratio: 1.069519e-02	ci left: 3.224841e-01	ci right 3.259552e-01	k: 90781	n:280000
C1orf116   280000 perm   85 sec   (3295 perm/sec)   p_kst 3.242179e-01   p_cons 2.042857e-03   p_joint 3.350000e-03

Joint ci ratio: 1.258481e-01	ci left: 3.124580e-03	ci right 3.547511e-03	k: 966	n:290000
Cons ci ratio: 1.608102e-01	ci left: 1.880376e-03	ci right 2.212459e-03	k: 592	n:290000
KS ci ratio: 1.051539e-02	ci left: 3.222554e-01	ci right 3.256654e-01	k: 93948	n:290000
C1orf116   290000 perm   89 sec   (3256 perm/sec)   p_kst 3.239586e-01   p_cons 2.041379e-03   p_joint 3.331034e-03

Joint ci ratio: 1.233835e-01	ci left: 3.146377e-03	ci right 3.563308e-03	k: 1005	n:300000
Cons ci ratio: 1.570144e-01	ci left: 1.910522e-03	ci right 2.239215e-03	k: 621	n:300000
KS ci ratio: 1.034397e-02	ci left: 3.220590e-01	ci right 3.254110e-01	k: 97120	n:300000
C1orf116   300000 perm   93 sec   (3218 perm/sec)   p_kst 3.237333e-01   p_cons 2.070000e-03   p_joint 3.350000e-03

Joint ci ratio: 1.158865e-01	ci left: 3.464247e-03	ci right 3.893501e-03	k: 1139	n:310000
Cons ci ratio: 1.545495e-01	ci left: 1.910894e-03	ci right 2.234012e-03	k: 641	n:310000
KS ci ratio: 1.017190e-02	ci left: 3.222527e-01	ci right 3.255506e-01	k: 100409	n:310000
C1orf116   310000 perm   97 sec   (3182 perm/sec)   p_kst 3.239000e-01   p_cons 2.067742e-03   p_joint 3.674194e-03

Joint ci ratio: 1.197495e-01	ci left: 3.137586e-03	ci right 3.540241e-03	k: 1067	n:320000
Cons ci ratio: 1.515107e-01	ci left: 1.929319e-03	ci right 2.248556e-03	k: 667	n:320000
KS ci ratio: 1.001306e-02	ci left: 3.222194e-01	ci right 3.254651e-01	k: 103629	n:320000
C1orf116   320000 perm   102 sec   (3145 perm/sec)   p_kst 3.238406e-01   p_cons 2.084375e-03   p_joint 3.334375e-03

Joint ci ratio: 1.182110e-01	ci left: 3.124830e-03	ci right 3.520335e-03	k: 1095	n:330000
Cons ci ratio: 1.490755e-01	ci left: 1.935015e-03	ci right 2.249589e-03	k: 689	n:330000
KS ci ratio: 9.864237e-03	ci left: 3.220643e-01	ci right 3.252600e-01	k: 106808	n:330000
C1orf116   330000 perm   106 sec   (3109 perm/sec)   p_kst 3.236606e-01   p_cons 2.087879e-03   p_joint 3.318182e-03

Joint ci ratio: 1.161100e-01	ci left: 3.147125e-03	ci right 3.537886e-03	k: 1135	n:340000
Cons ci ratio: 1.463427e-01	ci left: 1.951748e-03	ci right 2.262718e-03	k: 715	n:340000
KS ci ratio: 9.719243e-03	ci left: 3.220363e-01	ci right 3.251844e-01	k: 110027	n:340000
C1orf116   340000 perm   111 sec   (3074 perm/sec)   p_kst 3.236088e-01   p_cons 2.102941e-03   p_joint 3.338235e-03

Joint ci ratio: 1.141172e-01	ci left: 3.168204e-03	ci right 3.554377e-03	k: 1175	n:350000
Cons ci ratio: 1.431760e-01	ci left: 1.984103e-03	ci right 2.292804e-03	k: 747	n:350000
KS ci ratio: 9.575836e-03	ci left: 3.222213e-01	ci right 3.253245e-01	k: 113320	n:350000
C1orf116   350000 perm   115 sec   (3039 perm/sec)   p_kst 3.237714e-01   p_cons 2.134286e-03   p_joint 3.357143e-03

Joint ci ratio: 1.124558e-01	ci left: 3.174666e-03	ci right 3.555619e-03	k: 1210	n:360000
Cons ci ratio: 1.410239e-01	ci left: 1.990607e-03	ci right 2.295273e-03	k: 770	n:360000
KS ci ratio: 9.442485e-03	ci left: 3.222160e-01	ci right 3.252757e-01	k: 116548	n:360000
C1orf116   360000 perm   120 sec   (2998 perm/sec)   p_kst 3.237444e-01   p_cons 2.138889e-03   p_joint 3.361111e-03

Joint ci ratio: 1.110887e-01	ci left: 3.167678e-03	ci right 3.542869e-03	k: 1240	n:370000
Cons ci ratio: 1.397621e-01	ci left: 1.973315e-03	ci right 2.272406e-03	k: 784	n:370000
KS ci ratio: 9.312715e-03	ci left: 3.222977e-01	ci right 3.253159e-01	k: 119808	n:370000
C1orf116   370000 perm   125 sec   (2966 perm/sec)   p_kst 3.238054e-01   p_cons 2.118919e-03   p_joint 3.351351e-03

Joint ci ratio: 1.093397e-01	ci left: 3.186681e-03	ci right 3.557798e-03	k: 1280	n:380000
Cons ci ratio: 1.376729e-01	ci left: 1.982352e-03	ci right 2.277954e-03	k: 808	n:380000
KS ci ratio: 9.192128e-03	ci left: 3.221861e-01	ci right 3.251639e-01	k: 122996	n:380000
C1orf116   380000 perm   130 sec   (2934 perm/sec)   p_kst 3.236737e-01   p_cons 2.126316e-03   p_joint 3.368421e-03

Joint ci ratio: 1.049171e-01	ci left: 3.379485e-03	ci right 3.756155e-03	k: 1390	n:390000
Cons ci ratio: 1.359201e-01	ci left: 1.983526e-03	ci right 2.275232e-03	k: 829	n:390000
KS ci ratio: 9.073768e-03	ci left: 3.221932e-01	ci right 3.251325e-01	k: 126228	n:390000
C1orf116   390000 perm   134 sec   (2902 perm/sec)   p_kst 3.236615e-01   p_cons 2.125641e-03   p_joint 3.564103e-03

Joint ci ratio: 1.066275e-01	ci left: 3.187891e-03	ci right 3.549362e-03	k: 1346	n:400000
Cons ci ratio: 1.336828e-01	ci left: 2.001578e-03	ci right 2.290709e-03	k: 857	n:400000
KS ci ratio: 8.962015e-03	ci left: 3.220952e-01	ci right 3.249973e-01	k: 129418	n:400000
C1orf116   400000 perm   139 sec   (2871 perm/sec)   p_kst 3.235450e-01   p_cons 2.142500e-03   p_joint 3.365000e-03

Joint ci ratio: 1.054217e-01	ci left: 3.183742e-03	ci right 3.540407e-03	k: 1377	n:410000
Cons ci ratio: 1.320011e-01	ci left: 2.004635e-03	ci right 2.290279e-03	k: 879	n:410000
KS ci ratio: 8.848620e-03	ci left: 3.222825e-01	ci right 3.251493e-01	k: 132723	n:410000
C1orf116   410000 perm   144 sec   (2842 perm/sec)   p_kst 3.237146e-01   p_cons 2.143902e-03   p_joint 3.358537e-03

Joint ci ratio: 1.041817e-01	ci left: 3.184451e-03	ci right 3.536742e-03	k: 1410	n:420000
Cons ci ratio: 1.300926e-01	ci left: 2.016782e-03	ci right 2.299681e-03	k: 905	n:420000
KS ci ratio: 8.741512e-03	ci left: 3.223564e-01	ci right 3.251889e-01	k: 135984	n:420000
C1orf116   420000 perm   149 sec   (2812 perm/sec)   p_kst 3.237714e-01   p_cons 2.154762e-03   p_joint 3.357143e-03

Joint ci ratio: 1.029129e-01	ci left: 3.189681e-03	ci right 3.537994e-03	k: 1445	n:430000
Cons ci ratio: 1.286107e-01	ci left: 2.017137e-03	ci right 2.296616e-03	k: 926	n:430000
KS ci ratio: 8.639256e-03	ci left: 3.223736e-01	ci right 3.251730e-01	k: 139222	n:430000
C1orf116   430000 perm   155 sec   (2779 perm/sec)   p_kst 3.237721e-01   p_cons 2.153488e-03   p_joint 3.360465e-03

Joint ci ratio: 1.021752e-01	ci left: 3.163690e-03	ci right 3.506538e-03	k: 1466	n:440000
Cons ci ratio: 1.276515e-01	ci left: 2.002090e-03	ci right 2.277259e-03	k: 940	n:440000
KS ci ratio: 8.542768e-03	ci left: 3.222744e-01	ci right 3.250416e-01	k: 142409	n:440000
C1orf116   440000 perm   160 sec   (2748 perm/sec)   p_kst 3.236568e-01   p_cons 2.136364e-03   p_joint 3.331818e-03

Joint ci ratio: 1.011127e-01	ci left: 3.160523e-03	ci right 3.499255e-03	k: 1497	n:450000
Cons ci ratio: 1.261193e-01	ci left: 2.007088e-03	ci right 2.279386e-03	k: 963	n:450000
KS ci ratio: 8.443998e-03	ci left: 3.224617e-01	ci right 3.251983e-01	k: 145723	n:450000
C1orf116   450000 perm   165 sec   (2720 perm/sec)   p_kst 3.238289e-01   p_cons 2.140000e-03   p_joint 3.326667e-03

Joint ci ratio: 1.001155e-01	ci left: 3.155392e-03	ci right 3.490043e-03	k: 1527	n:460000
Cons ci ratio: 1.246409e-01	ci left: 2.011888e-03	ci right 2.281401e-03	k: 986	n:460000
KS ci ratio: 8.352926e-03	ci left: 3.224131e-01	ci right 3.251196e-01	k: 148932	n:460000
C1orf116   460000 perm   171 sec   (2691 perm/sec)   p_kst 3.237652e-01   p_cons 2.143478e-03   p_joint 3.319565e-03

Joint ci ratio: 9.914729e-02	ci left: 3.150494e-03	ci right 3.481207e-03	k: 1557	n:470000
Cons ci ratio: 1.231523e-01	ci left: 2.018563e-03	ci right 2.285506e-03	k: 1010	n:470000
KS ci ratio: 8.267350e-03	ci left: 3.222285e-01	ci right 3.249056e-01	k: 152076	n:470000
C1orf116   470000 perm   176 sec   (2664 perm/sec)   p_kst 3.235660e-01   p_cons 2.148936e-03   p_joint 3.312766e-03

Joint ci ratio: 9.820662e-02	ci left: 3.145816e-03	ci right 3.472724e-03	k: 1587	n:480000
Cons ci ratio: 1.216568e-01	ci left: 2.026999e-03	ci right 2.291568e-03	k: 1035	n:480000
KS ci ratio: 8.180961e-03	ci left: 3.222328e-01	ci right 3.248818e-01	k: 155307	n:480000
C1orf116   480000 perm   182 sec   (2637 perm/sec)   p_kst 3.235562e-01   p_cons 2.156250e-03   p_joint 3.306250e-03

Joint ci ratio: 9.714175e-02	ci left: 3.151300e-03	ci right 3.475025e-03	k: 1622	n:490000
Cons ci ratio: 1.207288e-01	ci left: 2.017294e-03	ci right 2.278444e-03	k: 1051	n:490000
KS ci ratio: 8.096394e-03	ci left: 3.222819e-01	ci right 3.249038e-01	k: 158560	n:490000
C1orf116   490000 perm   188 sec   (2610 perm/sec)   p_kst 3.235918e-01   p_cons 2.144898e-03   p_joint 3.310204e-03

Joint ci ratio: 9.585012e-02	ci left: 3.174152e-03	ci right 3.495645e-03	k: 1666	n:500000
Cons ci ratio: 1.195417e-01	ci left: 2.017686e-03	ci right 2.276137e-03	k: 1072	n:500000
KS ci ratio: 8.015385e-03	ci left: 3.222753e-01	ci right 3.248708e-01	k: 161786	n:500000
C1orf116   500000 perm   193 sec   (2584 perm/sec)   p_kst 3.235720e-01   p_cons 2.144000e-03   p_joint 3.332000e-03

Joint ci ratio: 9.505564e-02	ci left: 3.165505e-03	ci right 3.483316e-03	k: 1694	n:510000
Cons ci ratio: 1.181725e-01	ci left: 2.025687e-03	ci right 2.281982e-03	k: 1097	n:510000
KS ci ratio: 7.935551e-03	ci left: 3.223356e-01	ci right 3.249056e-01	k: 165046	n:510000
C1orf116   510000 perm   199 sec   (2560 perm/sec)   p_kst 3.236196e-01   p_cons 2.150980e-03   p_joint 3.321569e-03

Joint ci ratio: 9.411632e-02	ci left: 3.168468e-03	ci right 3.483260e-03	k: 1728	n:520000
Cons ci ratio: 1.170585e-01	ci left: 2.025928e-03	ci right 2.279670e-03	k: 1118	n:520000
KS ci ratio: 7.858229e-03	ci left: 3.223841e-01	ci right 3.249294e-01	k: 168301	n:520000
C1orf116   520000 perm   205 sec   (2535 perm/sec)   p_kst 3.236558e-01   p_cons 2.150000e-03   p_joint 3.323077e-03

Joint ci ratio: 9.301920e-02	ci left: 3.184235e-03	ci right 3.496705e-03	k: 1769	n:530000
Cons ci ratio: 1.160774e-01	ci left: 2.022506e-03	ci right 2.273552e-03	k: 1137	n:530000
KS ci ratio: 7.782252e-03	ci left: 3.224800e-01	ci right 3.250012e-01	k: 171582	n:530000
C1orf116   530000 perm   211 sec   (2511 perm/sec)   p_kst 3.237396e-01   p_cons 2.145283e-03   p_joint 3.337736e-03

Joint ci ratio: 1.122407e-01	ci left: 2.127179e-03	ci right 2.381913e-03	k: 1216	n:540000
Cons ci ratio: 1.146745e-01	ci left: 2.035408e-03	ci right 2.284796e-03	k: 1165	n:540000
KS ci ratio: 7.711175e-03	ci left: 3.224169e-01	ci right 3.249146e-01	k: 174779	n:540000
C1orf116   540000 perm   217 sec   (2487 perm/sec)   p_kst 3.236648e-01   p_cons 2.157407e-03   p_joint 2.251852e-03

Joint ci ratio: 1.114655e-01	ci left: 2.118546e-03	ci right 2.370379e-03	k: 1233	n:550000
Cons ci ratio: 1.135598e-01	ci left: 2.039026e-03	ci right 2.286265e-03	k: 1188	n:550000
KS ci ratio: 7.638933e-03	ci left: 3.225325e-01	ci right 3.250075e-01	k: 178073	n:550000
C1orf116   550000 perm   223 sec   (2464 perm/sec)   p_kst 3.237691e-01   p_cons 2.160000e-03   p_joint 2.241818e-03

Joint ci ratio: 1.107061e-01	ci left: 2.110228e-03	ci right 2.359252e-03	k: 1250	n:560000
Cons ci ratio: 1.127103e-01	ci left: 2.033848e-03	ci right 2.278491e-03	k: 1206	n:560000
KS ci ratio: 7.568776e-03	ci left: 3.226387e-01	ci right 3.250917e-01	k: 181364	n:560000
C1orf116   560000 perm   230 sec   (2438 perm/sec)   p_kst 3.238643e-01   p_cons 2.153571e-03   p_joint 2.232143e-03

Joint ci ratio: 1.098318e-01	ci left: 2.107327e-03	ci right 2.353917e-03	k: 1270	n:570000
Cons ci ratio: 1.118795e-01	ci left: 2.028858e-03	ci right 2.270984e-03	k: 1224	n:570000
KS ci ratio: 7.501599e-03	ci left: 3.226782e-01	ci right 3.251096e-01	k: 184619	n:570000
C1orf116   570000 perm   236 sec   (2415 perm/sec)   p_kst 3.238930e-01   p_cons 2.147368e-03   p_joint 2.228070e-03

Joint ci ratio: 1.087250e-01	ci left: 2.114596e-03	ci right 2.359384e-03	k: 1296	n:580000
Cons ci ratio: 1.109774e-01	ci left: 2.027399e-03	ci right 2.267272e-03	k: 1244	n:580000
KS ci ratio: 7.434159e-03	ci left: 3.228352e-01	ci right 3.252459e-01	k: 187943	n:580000
C1orf116   580000 perm   242 sec   (2393 perm/sec)   p_kst 3.240397e-01   p_cons 2.144828e-03   p_joint 2.234483e-03

Joint ci ratio: 8.830614e-02	ci left: 3.181777e-03	ci right 3.477370e-03	k: 1963	n:590000
Cons ci ratio: 1.103154e-01	ci left: 2.017756e-03	ci right 2.254972e-03	k: 1259	n:590000
KS ci ratio: 7.372527e-03	ci left: 3.227483e-01	ci right 3.251382e-01	k: 191126	n:590000
C1orf116   590000 perm   249 sec   (2371 perm/sec)   p_kst 3.239424e-01   p_cons 2.133898e-03   p_joint 3.327119e-03

Joint ci ratio: 1.073283e-01	ci left: 2.099244e-03	ci right 2.338936e-03	k: 1330	n:600000
Cons ci ratio: 1.094075e-01	ci left: 2.018165e-03	ci right 2.253350e-03	k: 1280	n:600000
KS ci ratio: 7.309369e-03	ci left: 3.228458e-01	ci right 3.252159e-01	k: 194418	n:600000
C1orf116   600000 perm   255 sec   (2350 perm/sec)   p_kst 3.240300e-01   p_cons 2.133333e-03   p_joint 2.216667e-03

Joint ci ratio: 1.064916e-01	ci left: 2.098336e-03	ci right 2.335939e-03	k: 1351	n:610000
Cons ci ratio: 1.086891e-01	ci left: 2.012189e-03	ci right 2.245039e-03	k: 1297	n:610000
KS ci ratio: 7.250112e-03	ci left: 3.228010e-01	ci right 3.251515e-01	k: 197625	n:610000
C1orf116   610000 perm   262 sec   (2329 perm/sec)   p_kst 3.239754e-01   p_cons 2.126230e-03   p_joint 2.214754e-03

Joint ci ratio: 1.053288e-01	ci left: 2.111598e-03	ci right 2.347930e-03	k: 1381	n:620000
Cons ci ratio: 1.079435e-01	ci left: 2.007979e-03	ci right 2.238648e-03	k: 1315	n:620000
KS ci ratio: 7.189785e-03	ci left: 3.229092e-01	ci right 3.252408e-01	k: 200926	n:620000
C1orf116   620000 perm   268 sec   (2310 perm/sec)   p_kst 3.240742e-01   p_cons 2.120968e-03   p_joint 2.227419e-03

Joint ci ratio: 1.045377e-01	ci left: 2.110539e-03	ci right 2.344869e-03	k: 1402	n:630000
Cons ci ratio: 1.074555e-01	ci left: 1.994641e-03	ci right 2.222675e-03	k: 1327	n:630000
KS ci ratio: 7.131894e-03	ci left: 3.229554e-01	ci right 3.252685e-01	k: 204190	n:630000
C1orf116   630000 perm   275 sec   (2290 perm/sec)   p_kst 3.241111e-01   p_cons 2.106349e-03   p_joint 2.225397e-03

Joint ci ratio: 1.038372e-01	ci left: 2.106476e-03	ci right 2.338692e-03	k: 1421	n:640000
Cons ci ratio: 1.068144e-01	ci left: 1.987804e-03	ci right 2.213616e-03	k: 1343	n:640000
KS ci ratio: 7.076414e-03	ci left: 3.229362e-01	ci right 3.252310e-01	k: 207413	n:640000
C1orf116   640000 perm   282 sec   (2270 perm/sec)   p_kst 3.240828e-01   p_cons 2.098438e-03   p_joint 2.220313e-03

Joint ci ratio: 8.364314e-02	ci left: 3.226794e-03	ci right 3.509968e-03	k: 2188	n:650000
Cons ci ratio: 1.059118e-01	ci left: 1.991666e-03	ci right 2.215886e-03	k: 1366	n:650000
KS ci ratio: 7.021889e-03	ci left: 3.229376e-01	ci right 3.252147e-01	k: 210649	n:650000
C1orf116   650000 perm   289 sec   (2250 perm/sec)   p_kst 3.240754e-01   p_cons 2.101538e-03   p_joint 3.366154e-03

Joint ci ratio: 1.023021e-01	ci left: 2.106115e-03	ci right 2.334653e-03	k: 1464	n:660000
Cons ci ratio: 1.051455e-01	ci left: 1.990992e-03	ci right 2.213414e-03	k: 1386	n:660000
KS ci ratio: 6.970268e-03	ci left: 3.228346e-01	ci right 3.250942e-01	k: 213816	n:660000
C1orf116   660000 perm   296 sec   (2231 perm/sec)   p_kst 3.239636e-01   p_cons 2.100000e-03   p_joint 2.218182e-03

Joint ci ratio: 1.016110e-01	ci left: 2.103770e-03	ci right 2.330419e-03	k: 1484	n:670000
Cons ci ratio: 1.045820e-01	ci left: 1.983076e-03	ci right 2.203354e-03	k: 1401	n:670000
KS ci ratio: 6.916610e-03	ci left: 3.229346e-01	ci right 3.251774e-01	k: 217117	n:670000
C1orf116   670000 perm   303 sec   (2212 perm/sec)   p_kst 3.240552e-01   p_cons 2.091045e-03   p_joint 2.214925e-03

Joint ci ratio: 1.008331e-01	ci left: 2.105799e-03	ci right 2.330828e-03	k: 1507	n:680000
Cons ci ratio: 1.036979e-01	ci left: 1.988289e-03	ci right 2.207164e-03	k: 1425	n:680000
KS ci ratio: 6.865393e-03	ci left: 3.229538e-01	ci right 3.251801e-01	k: 220365	n:680000
C1orf116   680000 perm   310 sec   (2193 perm/sec)   p_kst 3.240662e-01   p_cons 2.095588e-03   p_joint 2.216176e-03

Joint ci ratio: 1.001055e-01	ci left: 2.106364e-03	ci right 2.329733e-03	k: 1529	n:690000
Cons ci ratio: 1.028715e-01	ci left: 1.991945e-03	ci right 2.209370e-03	k: 1448	n:690000
KS ci ratio: 6.816559e-03	ci left: 3.228914e-01	ci right 3.251014e-01	k: 223557	n:690000
C1orf116   690000 perm   317 sec   (2176 perm/sec)   p_kst 3.239957e-01   p_cons 2.098551e-03   p_joint 2.215942e-03

Joint ci ratio: 9.952210e-02	ci left: 2.101345e-03	ci right 2.322807e-03	k: 1547	n:700000
Cons ci ratio: 1.022038e-01	ci left: 1.989936e-03	ci right 2.205647e-03	k: 1467	n:700000
KS ci ratio: 6.767606e-03	ci left: 3.229051e-01	ci right 3.250992e-01	k: 226801	n:700000
C1orf116   700000 perm   324 sec   (2158 perm/sec)   p_kst 3.240014e-01   p_cons 2.095714e-03   p_joint 2.210000e-03

Joint ci ratio: 9.879084e-02	ci left: 2.103339e-03	ci right 2.323289e-03	k: 1570	n:710000
Cons ci ratio: 1.014805e-01	ci left: 1.990733e-03	ci right 2.204912e-03	k: 1488	n:710000
KS ci ratio: 6.721442e-03	ci left: 3.228045e-01	ci right 3.249829e-01	k: 229964	n:710000
C1orf116   710000 perm   332 sec   (2140 perm/sec)   p_kst 3.238930e-01   p_cons 2.095775e-03   p_joint 2.211268e-03

Joint ci ratio: 9.801385e-02	ci left: 2.107994e-03	ci right 2.326597e-03	k: 1595	n:720000
Cons ci ratio: 1.004727e-01	ci left: 2.003699e-03	ci right 2.217006e-03	k: 1518	n:720000
KS ci ratio: 6.675194e-03	ci left: 3.227733e-01	ci right 3.249364e-01	k: 233175	n:720000
C1orf116   720000 perm   340 sec   (2119 perm/sec)   p_kst 3.238542e-01   p_cons 2.108333e-03   p_joint 2.215278e-03

Joint ci ratio: 9.740559e-02	ci left: 2.105845e-03	ci right 2.322793e-03	k: 1615	n:730000
Cons ci ratio: 9.981784e-02	ci left: 2.002962e-03	ci right 2.214719e-03	k: 1538	n:730000
KS ci ratio: 6.629908e-03	ci left: 3.227417e-01	ci right 3.248899e-01	k: 236385	n:730000
C1orf116   730000 perm   347 sec   (2103 perm/sec)   p_kst 3.238151e-01   p_cons 2.106849e-03   p_joint 2.212329e-03

Outputting figure to mutsig2_images.part000000000022/C1orf116.2_1818_730000_0.32382_0.0021068_0.0022123.png
                gene_name: C1orf116
               theta_stop: 0.100 
                    nperm: 730000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.0021 
      ci_cons_bounds_left: 0.0020 
     ci_cons_bounds_right: 0.0022 
                  p_joint: 0.0022 
     ci_joint_bounds_left: 0.0021 
    ci_joint_bounds_right: 0.0023 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000022
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 22 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1655>
Subject: Job 9876969: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1655>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000023> was used as the working directory.
Started at Fri Oct  5 22:27:33 2012
Results reported at Fri Oct  5 22:29:21 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000023.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000023.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 23  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000023.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    121.60 sec.
    Max Memory :      2076 MB
    Max Swap   :      4565 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
23
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 23
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 23: processing genes 1996 - 2085
Calculating significance of each gene.
Using projection method.
1996	C1orf173	9.332590e-02
1997	C1orf174	1
1998	C1orf175	1
1999	C1orf177	1
2000/18134 2000	C1orf182	1
2001	C1orf183	1
2002	C1orf186	1
2003	C1orf187	1
2004	C1orf189	1
2005	C1orf190	1
2006	C1orf192	3.371073e-02
2007	C1orf194	1
2008	C1orf198	1
2009	C1orf201	9.096736e-02
2010	C1orf21	1
2011	C1orf210	1
2012	C1orf213	1
2013	C1orf216	1
2014	C1orf226	1
2015	C1orf227	1
2016	C1orf25	1
2017	C1orf26	1
2018	C1orf27	1
2019	C1orf31	1
2020	C1orf35	1
2021	C1orf38	2.097704e-01
2022	C1orf43	1
2023	C1orf49	1
2024	C1orf50	1
2025	C1orf51	1
2026	C1orf52	1
2027	C1orf53	1
2028	C1orf54	1
2029	C1orf55	1
2030	C1orf56	1
2031	C1orf57	1
2032	C1orf58	1
2033	C1orf59	1
2034	C1orf61	1
2035	C1orf63	1
2036	C1orf64	1
2037	C1orf65	1
2038	C1orf66	1
2039	C1orf69	1
2040	C1orf74	1
2041	C1orf77	1
2042	C1orf83	1
2043	C1orf84	1
2044	C1orf85	1
2045	C1orf86	1
2046	C1orf87	1
2047	C1orf88	1
2048	C1orf89	1
2049	C1orf9	1
2050	C1orf91	1
2051	C1orf92	1
2052	C1orf93	1
2053	C1orf94	1
2054	C1orf95	1
2055	C1orf96	1
2056	C2	1
2057	C20orf103	1
2058	C20orf106	1
2059	C20orf107	1
2060	C20orf108	1
2061	C20orf11	1
2062	C20orf111	1.828614e-03
2063	C20orf112	1
2064	C20orf114	1.634362e-01
2065	C20orf117	1
2066	C20orf118	1
2067	C20orf12	4.402246e-02
2068	C20orf132	1
2069	C20orf134	1
2070	C20orf135	1
2071	C20orf141	1
2072	C20orf144	1
2073	C20orf151	1
2074	C20orf152	1
2075	C20orf160	1
2076	C20orf165	1
2077	C20orf166	1
2078	C20orf177	1
2079	C20orf185	1
2080	C20orf186	1
2081	C20orf194	2.193199e-02
2082	C20orf195	1
2083	C20orf196	1
2084	C20orf197	1
2085	C20orf20	1
Done

Running MutSig 2:
Scatter job 23: processing genes 1996 - 2085
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
C1orf173
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.740754e-02	ci left: 1.961390e-01	ci right 2.120337e-01	k: 2040	n:10000
Cons ci ratio: 6.075972e-02	ci left: 2.848834e-01	ci right 3.028368e-01	k: 2938	n:10000
KS ci ratio: 4.561562e-02	ci left: 4.149851e-01	ci right 4.344588e-01	k: 4247	n:10000
C1orf173   10000 perm   2 sec   (4775 perm/sec)   p_kst 4.247000e-01   p_cons 2.938000e-01   p_joint 2.040000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf173.2_4649_10000_0.4247_0.2938_0.204.png
                gene_name: C1orf173
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 33 percent done.
C20orf111
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.486315e-02	ci left: 7.041236e-01	ci right 7.219521e-01	k: 7131	n:10000
Cons ci ratio: 2.158142e-02	ci left: 7.589922e-01	ci right 7.756518e-01	k: 7674	n:10000
KS ci ratio: 4.930512e-02	ci left: 3.776368e-01	ci right 3.968289e-01	k: 3872	n:10000
C20orf111   10000 perm   2 sec   (6555 perm/sec)   p_kst 3.872000e-01   p_cons 7.674000e-01   p_joint 7.131000e-01

Outputting figure to mutsig2_images.part000000000023/C20orf111.2_891_10000_0.3872_0.7674_0.7131.png
                gene_name: C20orf111
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 67 percent done.
C20orf194
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.425481e-01	ci left: 6.526833e-02	ci right 7.538371e-02	k: 702	n:10000
Cons ci ratio: 1.432065e-01	ci left: 6.468834e-02	ci right 7.476406e-02	k: 696	n:10000
KS ci ratio: 6.409772e-02	ci left: 2.633947e-01	ci right 2.809382e-01	k: 2721	n:10000
C20orf194   10000 perm   2 sec   (5361 perm/sec)   p_kst 2.721000e-01   p_cons 6.960000e-02   p_joint 7.020000e-02

Joint ci ratio: 1.675123e-01	ci left: 2.441395e-02	ci right 2.892508e-02	k: 532	n:20000
Cons ci ratio: 1.020137e-01	ci left: 6.523233e-02	ci right 7.229367e-02	k: 1374	n:20000
KS ci ratio: 4.542165e-02	ci left: 2.651464e-01	ci right 2.775201e-01	k: 5426	n:20000
C20orf194   20000 perm   4 sec   (4711 perm/sec)   p_kst 2.713000e-01   p_cons 6.870000e-02   p_joint 2.660000e-02

Joint ci ratio: 9.868433e-02	ci left: 4.749567e-02	ci right 5.245861e-02	k: 1498	n:30000
Cons ci ratio: 8.278910e-02	ci left: 6.664747e-02	ci right 7.243623e-02	k: 2085	n:30000
KS ci ratio: 3.719171e-02	ci left: 2.651808e-01	ci right 2.752637e-01	k: 8106	n:30000
C20orf194   30000 perm   7 sec   (4556 perm/sec)   p_kst 2.702000e-01   p_cons 6.950000e-02   p_joint 4.993333e-02

Outputting figure to mutsig2_images.part000000000023/C20orf194.2_3682_30000_0.2702_0.0695_0.049933.png
                gene_name: C20orf194
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.070 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.072 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.052 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000023
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 23 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1533>
Subject: Job 9876973: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1533>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000024> was used as the working directory.
Started at Fri Oct  5 22:30:22 2012
Results reported at Fri Oct  5 22:32:14 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000024.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000024.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 24  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000024.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    119.72 sec.
    Max Memory :       961 MB
    Max Swap   :      3743 MB

    Max Processes  :         7
    Max Threads    :        55

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
24
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 24
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 24: processing genes 2086 - 2176
Calculating significance of each gene.
Using projection method.
2086	C20orf24	1
2087	C20orf26	1
2088	C20orf27	1
2089	C20orf29	1
2090	C20orf3	1
2091	C20orf30	1
2092	C20orf4	1
2093	C20orf43	1
2094	C20orf46	1
2095	C20orf54	1
2096	C20orf7	1
2097	C20orf70	1
2098	C20orf71	1
2099	C20orf72	1
2100	C20orf79	1
2101	C20orf85	1
2102	C20orf94	1
2103	C20orf96	1.235090e-01
2104	C21orf2	1
2105	C21orf29	1
2106	C21orf33	1
2107	C21orf45	1
2108	C21orf56	1
2109	C21orf57	1
2110	C21orf58	1
2111	C21orf59	1
2112	C21orf63	1
2113	C21orf7	1
2114	C21orf70	1.710587e-02
2115	C21orf91	1
2116	C22orf13	1
2117	C22orf15	1
2118	C22orf23	1
2119	C22orf24	1
2120	C22orf25	1
2121	C22orf28	1.640234e-01
2122	C22orf29	2.108245e-02
2123	C22orf31	1
2124	C22orf32	1
2125	C22orf33	1
2126	C22orf36	1
2127	C22orf39	1
2128	C22orf40	2.275317e-02
2129	C22orf42	1
In gene C22orf43 the following bins exceed PROBCAP:
    PRAD-EJ-5508	categ 6	N = 729     n = 1	mu =   2.32e-07
2130	C22orf43	2.149259e-02
2131	C22orf9	1
2132	C2CD2	1
2133	C2CD2L	1
2134	C2CD3	1
2135	C2CD4A	1
2136	C2orf15	1
2137	C2orf16	1
2138	C2orf18	1
2139	C2orf24	1
2140	C2orf28	1
2141	C2orf29	1
2142	C2orf3	9.018970e-02
2143	C2orf34	1
2144	C2orf39	1
2145	C2orf40	1
2146	C2orf42	1
2147	C2orf43	1
2148	C2orf44	1
2149	C2orf47	1
2150	C2orf48	1
2151	C2orf49	1
2152	C2orf50	1
2153	C2orf51	1
2154	C2orf53	1
2155	C2orf54	1
2156	C2orf55	1
2157	C2orf56	1
2158	C2orf57	1
2159	C2orf60	1
2160	C2orf61	1
2161	C2orf62	1
2162	C2orf63	1
2163	C2orf64	1
2164	C2orf65	1
2165	C2orf66	1
In gene C2orf67 the following bins exceed PROBCAP:
    PRAD-EJ-5511	categ 6	N = 3020    n = 1	mu =   2.34e-07
2166	C2orf67	9.423571e-02
2167	C2orf68	1
2168	C2orf69	1
2169	C2orf7	1
2170	C2orf70	1
2171	C2orf71	2.499299e-01
2172	C2orf73	1
2173	C2orf76	1
2174	C2orf77	1
2175	C2orf78	6.915618e-02
2176	C2orf79	1
Done

Running MutSig 2:
Scatter job 24: processing genes 2086 - 2176
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000024
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 24 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1655>
Subject: Job 9876976: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1655>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000025> was used as the working directory.
Started at Fri Oct  5 22:30:35 2012
Results reported at Fri Oct  5 22:32:01 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000025.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000025.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 25  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000025.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     99.01 sec.
    Max Memory :      1223 MB
    Max Swap   :      4068 MB

    Max Processes  :         7
    Max Threads    :        55

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
25
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 25
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 25: processing genes 2177 - 2267
Calculating significance of each gene.
Using projection method.
2177	C2orf80	1
2178	C2orf83	1
2179	C2orf84	1
2180	C2orf85	1.930586e-01
2181	C2orf86	1
2182	C2orf88	1
2183	C2orf89	1
2184	C3	1
2185	C3AR1	1
2186	C3orf1	1
2187	C3orf10	1
2188	C3orf14	1
2189	C3orf15	1
2190	C3orf17	1
2191	C3orf18	1
2192	C3orf19	1.311935e-01
2193	C3orf20	1
2194	C3orf21	1
2195	C3orf22	1
2196	C3orf23	1
2197	C3orf24	1
2198	C3orf26	1
2199	C3orf27	1
2200	C3orf30	1
2201	C3orf31	1
2202	C3orf32	1
2203	C3orf33	1
2204	C3orf34	1
2205	C3orf35	1
2206	C3orf36	1
2207	C3orf37	1
2208	C3orf38	6.660113e-02
2209	C3orf39	1
2210	C3orf43	1
2211	C3orf45	1
2212	C3orf52	1
2213	C3orf54	1
2214	C3orf55	1
2215	C3orf57	1
2216	C3orf58	1
2217	C3orf59	3.538647e-02
2218	C3orf62	1
2219	C3orf63	1
2220	C3orf64	1
2221	C3orf67	1
2222	C3orf70	1
2223	C3orf71	1
2224	C3orf72	1
2225	C3orf75	1
2226	C3orf79	1
2227	C4BPA	1
2228	C4BPB	1
2229	C4orf14	1
2230	C4orf17	1.049971e-01
2231	C4orf19	1
2232	C4orf21	2.808284e-02
2233	C4orf22	1
2234	C4orf23	1.161927e-01
2235	C4orf26	1
2236	C4orf27	1
2237	C4orf29	1
2238	C4orf3	1
2239	C4orf31	1
2240	C4orf32	1
2241	C4orf33	6.177769e-02
2242	C4orf34	1
2243	C4orf35	1
2244	C4orf36	2.562249e-02
2245	C4orf37	1
2246	C4orf39	1
2247	C4orf40	1
2248	C4orf41	1
2249	C4orf43	3.359665e-02
2250	C4orf44	1
2251	C4orf45	1
2252	C4orf46	1
2253	C4orf49	1
2254	C4orf50	1
2255	C4orf51	1
2256	C4orf6	1
2257	C4orf7	1
2258	C5	1
2259	C5AR1	1
2260	C5orf13	1
2261	C5orf15	1
2262	C5orf20	1
2263	C5orf22	1
2264	C5orf23	1
2265	C5orf24	1
2266	C5orf25	1
2267	C5orf28	1
Done

Running MutSig 2:
Scatter job 25: processing genes 2177 - 2267
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
C4orf21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.753408e-02	ci left: 3.950588e-01	ci right 4.143968e-01	k: 4047	n:10000
KS ci ratio: 6.490955e-03	ci left: 9.700550e-01	ci right 9.764653e-01	k: 9734	n:10000
C4orf21   10000 perm   2 sec   (4146 perm/sec)   p_kst 9.734000e-01   p_cons 4.047000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000025/C4orf21.3_6423_10000_0.9734_0.4047_1.png
                gene_name: C4orf21
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000025
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 25 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 9876982: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000026> was used as the working directory.
Started at Fri Oct  5 22:30:58 2012
Results reported at Fri Oct  5 22:33:12 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000026.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000026.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 26  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000026.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     47.44 sec.
    Max Memory :      1538 MB
    Max Swap   :      4363 MB

    Max Processes  :         7
    Max Threads    :        67

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
26
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 26
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 26: processing genes 2268 - 2357
Calculating significance of each gene.
Using projection method.
2268	C5orf30	1
2269	C5orf32	1
2270	C5orf33	1
2271	C5orf34	1
2272	C5orf35	1
2273	C5orf36	1
2274	C5orf38	1
2275	C5orf39	1
2276	C5orf4	1
2277	C5orf40	1
2278	C5orf41	1
2279	C5orf42	1
2280	C5orf43	1
2281	C5orf44	1
2282	C5orf45	6.061569e-02
2283	C5orf46	1
2284	C5orf48	3.063548e-02
2285	C5orf49	1
2286	C5orf51	1
2287	C5orf53	1
2288	C5orf54	1
2289	C5orf55	1
2290	C5orf56	1
2291	C5orf58	1
2292	C5orf62	1
2293	C6	1
2294	C6orf1	1
2295	C6orf10	1
2296	C6orf105	1
2297	C6orf106	1
2298	C6orf108	1
2299	C6orf114	1
2300	C6orf115	1
2301	C6orf118	1
2302	C6orf120	1
2303	C6orf125	1
2304	C6orf126	1
2305	C6orf127	1
2306	C6orf129	1
2307	C6orf130	1
2308	C6orf134	1
2309	C6orf136	1
2310	C6orf138	2.602194e-01
2311	C6orf142	1
2312	C6orf145	1
2313	C6orf146	1
2314	C6orf15	1
2315	C6orf150	1
2316	C6orf153	1
2317	C6orf154	1
2318	C6orf162	1
2319	C6orf165	1.356285e-01
2320	C6orf167	1
2321	C6orf168	1
2322	C6orf170	2.242303e-01
2323	C6orf174	1
2324	C6orf182	3.951782e-02
2325	C6orf186	1
2326	C6orf191	1
2327	C6orf192	1
2328	C6orf195	1
2329	C6orf201	1
2330	C6orf203	1
2331	C6orf204	1
2332	C6orf211	1
2333	C6orf221	1
2334	C6orf222	1
2335	C6orf223	1
2336	C6orf225	1
2337	C6orf226	1
2338	C6orf25	1
2339	C6orf26	1
2340	C6orf27	1
2341	C6orf35	1
2342	C6orf47	1
2343	C6orf48	1
2344	C6orf57	1
2345	C6orf58	1
2346	C6orf62	1
2347	C6orf64	1
2348	C6orf70	1
2349	C6orf72	1
2350	C6orf81	1
2351	C6orf89	1
2352	C6orf97	1
2353	C7	1
2354	C7orf10	1
2355	C7orf11	1
2356	C7orf16	1
2357	C7orf23	1
Done

Running MutSig 2:
Scatter job 26: processing genes 2268 - 2357
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000026
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 26 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1730>
Subject: Job 9876989: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1730>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000027> was used as the working directory.
Started at Fri Oct  5 22:31:09 2012
Results reported at Sat Oct  6 01:11:57 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000027.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000027.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 27  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000027.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   9691.48 sec.
    Max Memory :      2038 MB
    Max Swap   :      4785 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
27
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 27
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 27: processing genes 2358 - 2448
Calculating significance of each gene.
Using projection method.
2358	C7orf25	1
2359	C7orf26	1
2360	C7orf27	1
2361	C7orf28A	1
In gene C7orf28B the following bins exceed PROBCAP:
    PRAD-EJ-5508	categ 6	N = 908     n = 1	mu =   2.32e-07
2362	C7orf28B	2.213846e-02
2363	C7orf29	1
2364	C7orf30	1
2365	C7orf31	1
2366	C7orf33	1
2367	C7orf34	1
2368	C7orf36	1
2369	C7orf41	1
2370	C7orf42	1
2371	C7orf43	1
2372	C7orf44	6.975674e-03
2373	C7orf45	1
2374	C7orf46	1
2375	C7orf47	1
2376	C7orf49	1
2377	C7orf50	1
2378	C7orf51	1
2379	C7orf52	1
2380	C7orf53	1
2381	C7orf55	1
2382	C7orf57	1
2383	C7orf58	1
2384	C7orf59	1
2385	C7orf60	1.407738e-01
2386	C7orf61	1
2387	C7orf63	3.397106e-02
2388	C7orf64	1
2389	C7orf65	1
2390	C7orf66	1
2391	C7orf68	1
2392	C7orf69	1
2393	C7orf70	1
2394	C8A	1
2395	C8B	1
2396	C8G	1
2397	C8orf22	1
2398	C8orf31	1
2399	C8orf33	1
2400	C8orf34	1
2401	C8orf37	1
2402	C8orf38	1
2403	C8orf4	1
2404	C8orf40	1
2405	C8orf41	1
2406	C8orf42	1
2407	C8orf44	1
2408	C8orf45	2.704468e-02
2409	C8orf46	2.324763e-02
2410	C8orf47	1
2411	C8orf58	1
2412	C8orf59	1
2413	C8orf73	1
2414	C8orf74	1
2415	C8orf76	1
2416	C8orf79	1
2417	C8orf80	1
2418	C8orf84	1
2419	C8orf85	1
2420	C8orf86	1
2421	C9	1
2422	C9orf100	8.699252e-02
2423	C9orf102	1
2424	C9orf103	1
2425	C9orf106	1
2426	C9orf11	1
2427	C9orf114	1
2428	C9orf116	1
2429	C9orf117	1.575834e-01
2430	C9orf119	1
2431	C9orf123	1
2432	C9orf125	3.300633e-02
2433	C9orf128	1
2434	C9orf129	1
2435	C9orf131	7.681076e-02
2436	C9orf135	1
2437	C9orf139	1
2438	C9orf140	1
2439	C9orf142	1
In gene C9orf150 the following bins exceed PROBCAP:
    PRAD-CH-5788	categ 6	N = 589     n = 1	mu =   2.66e-07
    PRAD-EJ-5510	categ 6	N = 560     n = 1	mu =   1.34e-07
2440	C9orf150	2.034538e-06
2441	C9orf152	1
2442	C9orf153	1
2443	C9orf156	1
2444	C9orf16	1
2445	C9orf163	1
2446	C9orf167	1
2447	C9orf170	1
2448	C9orf171	1
Done

Running MutSig 2:
Scatter job 27: processing genes 2358 - 2448
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
C9orf150
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.699811e-01	ci left: 9.049096e-03	ci right 1.324298e-02	k: 110	n:10000
Cons ci ratio: 2.993328e-03	ci left: 9.926212e-01	ci right 9.956801e-01	k: 9943	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
C9orf150   10000 perm   1 sec   (7845 perm/sec)   p_kst 1.000000e-04   p_cons 9.943000e-01   p_joint 1.100000e-02

Joint ci ratio: 4.077371e-01	ci left: 3.664911e-03	ci right 5.583495e-03	k: 91	n:20000
Cons ci ratio: 2.215577e-03	ci left: 9.925036e-01	ci right 9.947493e-01	k: 19874	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
C9orf150   20000 perm   5 sec   (4061 perm/sec)   p_kst 5.000000e-05   p_cons 9.937000e-01   p_joint 4.550000e-03

Joint ci ratio: 4.125772e-01	ci left: 2.383134e-03	ci right 3.649489e-03	k: 89	n:30000
Cons ci ratio: 1.787457e-03	ci left: 9.928813e-01	ci right 9.946878e-01	k: 29815	n:30000
KS ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
C9orf150   30000 perm   7 sec   (4545 perm/sec)   p_kst 3.333333e-05   p_cons 9.938333e-01   p_joint 2.966667e-03

Joint ci ratio: 4.272524e-01	ci left: 1.653054e-03	ci right 2.571635e-03	k: 83	n:40000
Cons ci ratio: 1.544872e-03	ci left: 9.930344e-01	ci right 9.945926e-01	k: 39754	n:40000
KS ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
C9orf150   40000 perm   8 sec   (4800 perm/sec)   p_kst 2.500000e-05   p_cons 9.938500e-01   p_joint 2.075000e-03

Joint ci ratio: 5.235334e-01	ci left: 8.287747e-04	ci right 1.431564e-03	k: 55	n:50000
Cons ci ratio: 1.257561e-03	ci left: 9.942360e-01	ci right 9.955055e-01	k: 49745	n:50000
KS ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
C9orf150   50000 perm   10 sec   (4941 perm/sec)   p_kst 2.000000e-05   p_cons 9.949000e-01   p_joint 1.100000e-03

Joint ci ratio: 6.442399e-01	ci left: 4.202669e-04	ci right 8.305571e-04	k: 36	n:60000
Cons ci ratio: 1.138193e-03	ci left: 9.943851e-01	ci right 9.955329e-01	k: 59699	n:60000
KS ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
C9orf150   60000 perm   12 sec   (5017 perm/sec)   p_kst 1.666667e-05   p_cons 9.949833e-01   p_joint 6.000000e-04

Joint ci ratio: 5.976065e-01	ci left: 4.324604e-04	ci right 8.109401e-04	k: 42	n:70000
Cons ci ratio: 1.025851e-03	ci left: 9.947049e-01	ci right 9.957391e-01	k: 69667	n:70000
KS ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
C9orf150   70000 perm   14 sec   (5041 perm/sec)   p_kst 1.428571e-05   p_cons 9.952429e-01   p_joint 6.000000e-04

Joint ci ratio: 6.357530e-01	ci left: 3.256629e-04	ci right 6.374395e-04	k: 37	n:80000
Cons ci ratio: 9.612226e-04	ci left: 9.947226e-01	ci right 9.956909e-01	k: 79618	n:80000
KS ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
C9orf150   80000 perm   16 sec   (5035 perm/sec)   p_kst 1.250000e-05   p_cons 9.952250e-01   p_joint 4.625000e-04

Joint ci ratio: 7.406910e-01	ci left: 1.977109e-04	ci right 4.364545e-04	k: 27	n:90000
Cons ci ratio: 9.106011e-04	ci left: 9.947033e-01	ci right 9.956199e-01	k: 89566	n:90000
KS ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
C9orf150   90000 perm   18 sec   (5015 perm/sec)   p_kst 1.111111e-05   p_cons 9.951778e-01   p_joint 3.000000e-04

Joint ci ratio: 6.928503e-01	ci left: 2.106394e-04	ci right 4.399916e-04	k: 31	n:100000
Cons ci ratio: 8.590721e-04	ci left: 9.947833e-01	ci right 9.956476e-01	k: 99523	n:100000
KS ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
C9orf150   100000 perm   20 sec   (4983 perm/sec)   p_kst 1.000000e-05   p_cons 9.952300e-01   p_joint 3.100000e-04

Joint ci ratio: 6.532234e-01	ci left: 2.216350e-04	ci right 4.424864e-04	k: 35	n:110000
Cons ci ratio: 8.176850e-04	ci left: 9.948211e-01	ci right 9.956434e-01	k: 109477	n:110000
KS ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
C9orf150   110000 perm   22 sec   (4940 perm/sec)   p_kst 9.090909e-06   p_cons 9.952455e-01   p_joint 3.181818e-04

Joint ci ratio: 6.443420e-01	ci left: 2.101249e-04	ci right 4.153025e-04	k: 36	n:120000
Cons ci ratio: 7.796788e-04	ci left: 9.948793e-01	ci right 9.956631e-01	k: 119434	n:120000
KS ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
C9orf150   120000 perm   25 sec   (4891 perm/sec)   p_kst 8.333333e-06   p_cons 9.952833e-01   p_joint 3.000000e-04

Joint ci ratio: 6.197087e-01	ci left: 2.133378e-04	ci right 4.100873e-04	k: 39	n:130000
Cons ci ratio: 7.513864e-04	ci left: 9.948651e-01	ci right 9.956202e-01	k: 129383	n:130000
KS ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
C9orf150   130000 perm   27 sec   (4838 perm/sec)   p_kst 7.692308e-06   p_cons 9.952538e-01   p_joint 3.000000e-04

Joint ci ratio: 6.047762e-01	ci left: 2.101673e-04	ci right 3.972730e-04	k: 41	n:140000
Cons ci ratio: 7.226663e-04	ci left: 9.948980e-01	ci right 9.956241e-01	k: 139338	n:140000
KS ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
C9orf150   140000 perm   29 sec   (4780 perm/sec)   p_kst 7.142857e-06   p_cons 9.952714e-01   p_joint 2.928571e-04

Joint ci ratio: 5.778819e-01	ci left: 2.188302e-04	ci right 4.014032e-04	k: 45	n:150000
Cons ci ratio: 7.014352e-04	ci left: 9.948648e-01	ci right 9.955692e-01	k: 149284	n:150000
KS ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
C9orf150   150000 perm   32 sec   (4724 perm/sec)   p_kst 6.666667e-06   p_cons 9.952267e-01   p_joint 3.000000e-04

Joint ci ratio: 9.799479e-01	ci left: 5.247208e-05	ci right 1.546217e-04	k: 15	n:160000
Cons ci ratio: 6.774650e-04	ci left: 9.949008e-01	ci right 9.955810e-01	k: 159240	n:160000
KS ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
C9orf150   160000 perm   34 sec   (4663 perm/sec)   p_kst 6.250000e-06   p_cons 9.952500e-01   p_joint 9.375000e-05

Joint ci ratio: 8.764845e-01	ci left: 6.729095e-05	ci right 1.745290e-04	k: 19	n:170000
Cons ci ratio: 6.570085e-04	ci left: 9.949147e-01	ci right 9.955742e-01	k: 169193	n:170000
KS ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
C9orf150   170000 perm   37 sec   (4604 perm/sec)   p_kst 5.882353e-06   p_cons 9.952529e-01   p_joint 1.117647e-04

Joint ci ratio: 1.047620e+00	ci left: 3.845583e-05	ci right 1.234990e-04	k: 13	n:180000
Cons ci ratio: 6.435292e-04	ci left: 9.948469e-01	ci right 9.954926e-01	k: 179132	n:180000
KS ci ratio: 2.771835e+00	ci left: 1.406545e-07	ci right 3.095318e-05	k: 1	n:180000
C9orf150   180000 perm   40 sec   (4544 perm/sec)   p_kst 5.555556e-06   p_cons 9.951778e-01   p_joint 7.222222e-05

Joint ci ratio: 9.799562e-01	ci left: 4.418689e-05	ci right 1.302083e-04	k: 15	n:190000
Cons ci ratio: 6.262705e-04	ci left: 9.948572e-01	ci right 9.954855e-01	k: 189084	n:190000
KS ci ratio: 2.771837e+00	ci left: 1.332516e-07	ci right 2.932409e-05	k: 1	n:190000
C9orf150   190000 perm   42 sec   (4483 perm/sec)   p_kst 5.263158e-06   p_cons 9.951789e-01   p_joint 7.894737e-05

Joint ci ratio: 9.799583e-01	ci left: 4.197752e-05	ci right 1.236981e-04	k: 15	n:200000
Cons ci ratio: 6.096939e-04	ci left: 9.948770e-01	ci right 9.954885e-01	k: 199038	n:200000
KS ci ratio: 2.771838e+00	ci left: 1.265890e-07	ci right 2.785790e-05	k: 1	n:200000
C9orf150   200000 perm   45 sec   (4416 perm/sec)   p_kst 5.000000e-06   p_cons 9.951900e-01   p_joint 7.500000e-05

Joint ci ratio: 9.239111e-01	ci left: 4.715843e-05	ci right 1.296095e-04	k: 17	n:210000
Cons ci ratio: 5.925864e-04	ci left: 9.949245e-01	ci right 9.955188e-01	k: 208998	n:210000
KS ci ratio: 2.771839e+00	ci left: 1.205610e-07	ci right 2.653135e-05	k: 1	n:210000
C9orf150   210000 perm   48 sec   (4355 perm/sec)   p_kst 4.761905e-06   p_cons 9.952286e-01   p_joint 8.095238e-05

Joint ci ratio: 9.239130e-01	ci left: 4.501483e-05	ci right 1.237182e-04	k: 17	n:220000
Cons ci ratio: 5.795814e-04	ci left: 9.949210e-01	ci right 9.955022e-01	k: 218948	n:220000
KS ci ratio: 2.771840e+00	ci left: 1.150809e-07	ci right 2.532539e-05	k: 1	n:220000
C9orf150   220000 perm   51 sec   (4296 perm/sec)   p_kst 4.545455e-06   p_cons 9.952182e-01   p_joint 7.727273e-05

Joint ci ratio: 9.239147e-01	ci left: 4.305764e-05	ci right 1.183393e-04	k: 17	n:230000
Cons ci ratio: 5.663598e-04	ci left: 9.949359e-01	ci right 9.955037e-01	k: 228902	n:230000
KS ci ratio: 2.771841e+00	ci left: 1.100774e-07	ci right 2.422430e-05	k: 1	n:230000
C9orf150   230000 perm   54 sec   (4239 perm/sec)   p_kst 4.347826e-06   p_cons 9.952261e-01   p_joint 7.391304e-05

Joint ci ratio: 9.239163e-01	ci left: 4.126355e-05	ci right 1.134086e-04	k: 17	n:240000
Cons ci ratio: 5.525418e-04	ci left: 9.949753e-01	ci right 9.955293e-01	k: 238862	n:240000
KS ci ratio: 2.771841e+00	ci left: 1.054909e-07	ci right 2.321496e-05	k: 1	n:240000
C9orf150   240000 perm   57 sec   (4184 perm/sec)   p_kst 4.166667e-06   p_cons 9.952583e-01   p_joint 7.083333e-05

Joint ci ratio: 8.992737e-01	ci left: 4.267230e-05	ci right 1.137887e-04	k: 18	n:250000
Cons ci ratio: 5.415026e-04	ci left: 9.949788e-01	ci right 9.955216e-01	k: 248814	n:250000
KS ci ratio: 2.771842e+00	ci left: 1.012712e-07	ci right 2.228637e-05	k: 1	n:250000
C9orf150   250000 perm   61 sec   (4128 perm/sec)   p_kst 4.000000e-06   p_cons 9.952560e-01   p_joint 7.200000e-05

Joint ci ratio: 8.992751e-01	ci left: 4.103104e-05	ci right 1.094123e-04	k: 18	n:260000
Cons ci ratio: 5.298017e-04	ci left: 9.950059e-01	ci right 9.955369e-01	k: 258772	n:260000
KS ci ratio: 2.771843e+00	ci left: 9.737618e-08	ci right 2.142921e-05	k: 1	n:260000
C9orf150   260000 perm   64 sec   (4073 perm/sec)   p_kst 3.846154e-06   p_cons 9.952769e-01   p_joint 6.923077e-05

Joint ci ratio: 9.239204e-01	ci left: 3.667866e-05	ci right 1.008079e-04	k: 17	n:270000
Cons ci ratio: 5.194336e-04	ci left: 9.950196e-01	ci right 9.955401e-01	k: 268727	n:270000
KS ci ratio: 2.771843e+00	ci left: 9.376965e-08	ci right 2.063554e-05	k: 1	n:270000
C9orf150   270000 perm   67 sec   (4019 perm/sec)   p_kst 3.703704e-06   p_cons 9.952852e-01   p_joint 6.296296e-05

Joint ci ratio: 8.765058e-01	ci left: 4.085491e-05	ci right 1.059653e-04	k: 19	n:280000
Cons ci ratio: 5.102318e-04	ci left: 9.950213e-01	ci right 9.955326e-01	k: 278679	n:280000
KS ci ratio: 2.263197e+00	ci left: 8.650343e-07	ci right 2.580222e-05	k: 2	n:280000
C9orf150   280000 perm   71 sec   (3964 perm/sec)   p_kst 7.142857e-06   p_cons 9.952821e-01   p_joint 6.785714e-05

Joint ci ratio: 8.765069e-01	ci left: 3.944611e-05	ci right 1.023114e-04	k: 19	n:290000
Cons ci ratio: 5.011343e-04	ci left: 9.950302e-01	ci right 9.955323e-01	k: 288633	n:290000
KS ci ratio: 2.263197e+00	ci left: 8.352055e-07	ci right 2.491249e-05	k: 2	n:290000
C9orf150   290000 perm   74 sec   (3911 perm/sec)   p_kst 6.896552e-06   p_cons 9.952862e-01   p_joint 6.551724e-05

Joint ci ratio: 8.357148e-01	ci left: 4.333161e-05	ci right 1.070005e-04	k: 21	n:300000
Cons ci ratio: 4.902264e-04	ci left: 9.950829e-01	ci right 9.955741e-01	k: 298600	n:300000
KS ci ratio: 2.263198e+00	ci left: 8.073653e-07	ci right 2.408208e-05	k: 2	n:300000
C9orf150   300000 perm   78 sec   (3855 perm/sec)   p_kst 6.666667e-06   p_cons 9.953333e-01   p_joint 7.000000e-05

Joint ci ratio: 8.357158e-01	ci left: 4.193380e-05	ci right 1.035489e-04	k: 21	n:310000
Cons ci ratio: 4.811324e-04	ci left: 9.951092e-01	ci right 9.955912e-01	k: 308560	n:310000
KS ci ratio: 2.263198e+00	ci left: 7.813212e-07	ci right 2.330525e-05	k: 2	n:310000
C9orf150   310000 perm   81 sec   (3805 perm/sec)   p_kst 6.451613e-06   p_cons 9.953548e-01   p_joint 6.774194e-05

Joint ci ratio: 8.992816e-01	ci left: 3.333764e-05	ci right 8.889780e-05	k: 18	n:320000
Cons ci ratio: 4.747557e-04	ci left: 9.950890e-01	ci right 9.955645e-01	k: 318506	n:320000
KS ci ratio: 2.263199e+00	ci left: 7.569049e-07	ci right 2.257696e-05	k: 2	n:320000
C9orf150   320000 perm   85 sec   (3759 perm/sec)   p_kst 6.250000e-06   p_cons 9.953313e-01   p_joint 5.625000e-05

Joint ci ratio: 8.992824e-01	ci left: 3.232740e-05	ci right 8.620397e-05	k: 18	n:330000
Cons ci ratio: 4.655658e-04	ci left: 9.951321e-01	ci right 9.955985e-01	k: 328472	n:330000
KS ci ratio: 2.263199e+00	ci left: 7.339684e-07	ci right 2.189282e-05	k: 2	n:330000
C9orf150   330000 perm   89 sec   (3706 perm/sec)   p_kst 6.060606e-06   p_cons 9.953697e-01   p_joint 5.454545e-05

Joint ci ratio: 8.553865e-01	ci left: 3.593130e-05	ci right 9.084672e-05	k: 20	n:340000
Cons ci ratio: 4.573012e-04	ci left: 9.951638e-01	ci right 9.956218e-01	k: 338435	n:340000
KS ci ratio: 2.263200e+00	ci left: 7.123810e-07	ci right 2.124892e-05	k: 2	n:340000
C9orf150   340000 perm   93 sec   (3661 perm/sec)   p_kst 5.882353e-06   p_cons 9.953971e-01   p_joint 5.882353e-05

Joint ci ratio: 8.357193e-01	ci left: 3.714132e-05	ci right 9.171492e-05	k: 21	n:350000
Cons ci ratio: 4.511339e-04	ci left: 9.951585e-01	ci right 9.956103e-01	k: 348386	n:350000
KS ci ratio: 2.263200e+00	ci left: 6.920273e-07	ci right 2.064181e-05	k: 2	n:350000
C9orf150   350000 perm   97 sec   (3619 perm/sec)   p_kst 5.714286e-06   p_cons 9.953886e-01   p_joint 6.000000e-05

Joint ci ratio: 8.357201e-01	ci left: 3.610960e-05	ci right 8.916732e-05	k: 21	n:360000
Cons ci ratio: 4.448049e-04	ci left: 9.951622e-01	ci right 9.956076e-01	k: 358340	n:360000
KS ci ratio: 2.263200e+00	ci left: 6.728043e-07	ci right 2.006843e-05	k: 2	n:360000
C9orf150   360000 perm   101 sec   (3579 perm/sec)   p_kst 5.555556e-06   p_cons 9.953889e-01   p_joint 5.833333e-05

Joint ci ratio: 8.173500e-01	ci left: 3.726329e-05	ci right 9.002096e-05	k: 22	n:370000
Cons ci ratio: 4.405389e-04	ci left: 9.951269e-01	ci right 9.955680e-01	k: 368280	n:370000
KS ci ratio: 2.263201e+00	ci left: 6.546203e-07	ci right 1.952605e-05	k: 2	n:370000
C9orf150   370000 perm   105 sec   (3537 perm/sec)   p_kst 5.405405e-06   p_cons 9.953514e-01   p_joint 5.945946e-05

Joint ci ratio: 8.173507e-01	ci left: 3.628267e-05	ci right 8.765202e-05	k: 22	n:380000
Cons ci ratio: 4.361206e-04	ci left: 9.950989e-01	ci right 9.955356e-01	k: 378222	n:380000
KS ci ratio: 2.263201e+00	ci left: 6.373935e-07	ci right 1.901221e-05	k: 2	n:380000
C9orf150   380000 perm   109 sec   (3496 perm/sec)   p_kst 5.263158e-06   p_cons 9.953211e-01   p_joint 5.789474e-05

Joint ci ratio: 1.047644e+00	ci left: 1.774871e-05	ci right 5.700034e-05	k: 13	n:390000
Cons ci ratio: 4.306333e-04	ci left: 9.950987e-01	ci right 9.955298e-01	k: 388174	n:390000
KS ci ratio: 2.263201e+00	ci left: 6.210500e-07	ci right 1.852472e-05	k: 2	n:390000
C9orf150   390000 perm   113 sec   (3457 perm/sec)   p_kst 5.128205e-06   p_cons 9.953179e-01   p_joint 3.333333e-05

Joint ci ratio: 1.012119e+00	ci left: 1.913495e-05	ci right 5.872336e-05	k: 14	n:400000
Cons ci ratio: 4.278478e-04	ci left: 9.950423e-01	ci right 9.954705e-01	k: 398104	n:400000
KS ci ratio: 2.263202e+00	ci left: 6.055238e-07	ci right 1.806160e-05	k: 2	n:400000
C9orf150   400000 perm   117 sec   (3417 perm/sec)   p_kst 5.000000e-06   p_cons 9.952600e-01   p_joint 3.500000e-05

Joint ci ratio: 1.012120e+00	ci left: 1.866824e-05	ci right 5.729110e-05	k: 14	n:410000
Cons ci ratio: 4.234243e-04	ci left: 9.950261e-01	ci right 9.954498e-01	k: 408049	n:410000
KS ci ratio: 2.263202e+00	ci left: 5.907549e-07	ci right 1.762108e-05	k: 2	n:410000
C9orf150   410000 perm   121 sec   (3378 perm/sec)   p_kst 4.878049e-06   p_cons 9.952415e-01   p_joint 3.414634e-05

Joint ci ratio: 1.012120e+00	ci left: 1.822376e-05	ci right 5.592704e-05	k: 14	n:420000
Cons ci ratio: 4.178684e-04	ci left: 9.950398e-01	ci right 9.954580e-01	k: 418006	n:420000
KS ci ratio: 2.263202e+00	ci left: 5.766893e-07	ci right 1.720153e-05	k: 2	n:420000
C9orf150   420000 perm   126 sec   (3339 perm/sec)   p_kst 4.761905e-06   p_cons 9.952524e-01   p_joint 3.333333e-05

Joint ci ratio: 1.012121e+00	ci left: 1.779995e-05	ci right 5.462642e-05	k: 14	n:430000
Cons ci ratio: 4.123202e-04	ci left: 9.950578e-01	ci right 9.954704e-01	k: 427965	n:430000
KS ci ratio: 2.263203e+00	ci left: 5.632779e-07	ci right 1.680150e-05	k: 2	n:430000
C9orf150   430000 perm   130 sec   (3301 perm/sec)   p_kst 4.651163e-06   p_cons 9.952674e-01   p_joint 3.255814e-05

Joint ci ratio: 1.012121e+00	ci left: 1.739540e-05	ci right 5.338493e-05	k: 14	n:440000
Cons ci ratio: 4.088495e-04	ci left: 9.950308e-01	ci right 9.954399e-01	k: 437905	n:440000
KS ci ratio: 2.263203e+00	ci left: 5.504761e-07	ci right 1.641965e-05	k: 2	n:440000
C9orf150   440000 perm   135 sec   (3265 perm/sec)   p_kst 4.545455e-06   p_cons 9.952386e-01   p_joint 3.181818e-05

Joint ci ratio: 1.012122e+00	ci left: 1.700883e-05	ci right 5.219861e-05	k: 14	n:450000
Cons ci ratio: 4.046945e-04	ci left: 9.950232e-01	ci right 9.954281e-01	k: 447853	n:450000
KS ci ratio: 2.263203e+00	ci left: 5.382433e-07	ci right 1.605477e-05	k: 2	n:450000
C9orf150   450000 perm   139 sec   (3229 perm/sec)   p_kst 4.444444e-06   p_cons 9.952289e-01   p_joint 3.111111e-05

Joint ci ratio: 1.012122e+00	ci left: 1.663908e-05	ci right 5.106387e-05	k: 14	n:460000
Cons ci ratio: 4.007536e-04	ci left: 9.950138e-01	ci right 9.954147e-01	k: 457800	n:460000
KS ci ratio: 2.263203e+00	ci left: 5.265423e-07	ci right 1.570575e-05	k: 2	n:460000
C9orf150   460000 perm   144 sec   (3193 perm/sec)   p_kst 4.347826e-06   p_cons 9.952174e-01   p_joint 3.043478e-05

Joint ci ratio: 1.012122e+00	ci left: 1.628505e-05	ci right 4.997741e-05	k: 14	n:470000
Cons ci ratio: 3.965694e-04	ci left: 9.950135e-01	ci right 9.954102e-01	k: 467751	n:470000
KS ci ratio: 2.263203e+00	ci left: 5.153393e-07	ci right 1.537159e-05	k: 2	n:470000
C9orf150   470000 perm   149 sec   (3161 perm/sec)   p_kst 4.255319e-06   p_cons 9.952149e-01   p_joint 2.978723e-05

Joint ci ratio: 1.012123e+00	ci left: 1.594578e-05	ci right 4.893623e-05	k: 14	n:480000
Cons ci ratio: 3.919126e-04	ci left: 9.950280e-01	ci right 9.954201e-01	k: 477709	n:480000
KS ci ratio: 2.263204e+00	ci left: 5.046031e-07	ci right 1.505135e-05	k: 2	n:480000
C9orf150   480000 perm   153 sec   (3128 perm/sec)   p_kst 4.166667e-06   p_cons 9.952271e-01   p_joint 2.916667e-05

Joint ci ratio: 1.012123e+00	ci left: 1.562035e-05	ci right 4.793754e-05	k: 14	n:490000
Cons ci ratio: 3.876638e-04	ci left: 9.950358e-01	ci right 9.954236e-01	k: 487664	n:490000
KS ci ratio: 2.263204e+00	ci left: 4.943050e-07	ci right 1.474418e-05	k: 2	n:490000
C9orf150   490000 perm   158 sec   (3094 perm/sec)   p_kst 4.081633e-06   p_cons 9.952327e-01   p_joint 2.857143e-05

Joint ci ratio: 1.087197e+00	ci left: 1.240121e-05	ci right 4.192279e-05	k: 12	n:500000
Cons ci ratio: 3.839540e-04	ci left: 9.950331e-01	ci right 9.954171e-01	k: 497614	n:500000
KS ci ratio: 2.263204e+00	ci left: 4.844189e-07	ci right 1.444930e-05	k: 2	n:500000
C9orf150   500000 perm   163 sec   (3064 perm/sec)   p_kst 4.000000e-06   p_cons 9.952280e-01   p_joint 2.400000e-05

Joint ci ratio: 1.087197e+00	ci left: 1.215805e-05	ci right 4.110079e-05	k: 12	n:510000
Cons ci ratio: 3.785408e-04	ci left: 9.950765e-01	ci right 9.954551e-01	k: 507587	n:510000
KS ci ratio: 2.263204e+00	ci left: 4.749205e-07	ci right 1.416598e-05	k: 2	n:510000
C9orf150   510000 perm   168 sec   (3028 perm/sec)   p_kst 3.921569e-06   p_cons 9.952686e-01   p_joint 2.352941e-05

Joint ci ratio: 1.087198e+00	ci left: 1.192424e-05	ci right 4.031039e-05	k: 12	n:520000
Cons ci ratio: 3.758513e-04	ci left: 9.950535e-01	ci right 9.954294e-01	k: 517527	n:520000
KS ci ratio: 2.263204e+00	ci left: 4.657874e-07	ci right 1.389356e-05	k: 2	n:520000
C9orf150   520000 perm   174 sec   (2995 perm/sec)   p_kst 3.846154e-06   p_cons 9.952442e-01   p_joint 2.307692e-05

Joint ci ratio: 1.087198e+00	ci left: 1.169925e-05	ci right 3.954983e-05	k: 12	n:530000
Cons ci ratio: 3.718748e-04	ci left: 9.950660e-01	ci right 9.954380e-01	k: 527485	n:530000
KS ci ratio: 2.263205e+00	ci left: 4.569990e-07	ci right 1.363142e-05	k: 2	n:530000
C9orf150   530000 perm   179 sec   (2964 perm/sec)   p_kst 3.773585e-06   p_cons 9.952547e-01   p_joint 2.264151e-05

Joint ci ratio: 1.047650e+00	ci left: 1.281849e-05	ci right 4.116705e-05	k: 13	n:540000
Cons ci ratio: 3.688865e-04	ci left: 9.950555e-01	ci right 9.954244e-01	k: 537431	n:540000
KS ci ratio: 2.263205e+00	ci left: 4.485360e-07	ci right 1.337899e-05	k: 2	n:540000
C9orf150   540000 perm   184 sec   (2936 perm/sec)   p_kst 3.703704e-06   p_cons 9.952426e-01   p_joint 2.407407e-05

Joint ci ratio: 1.047650e+00	ci left: 1.258543e-05	ci right 4.041856e-05	k: 13	n:550000
Cons ci ratio: 3.653357e-04	ci left: 9.950620e-01	ci right 9.954273e-01	k: 547386	n:550000
KS ci ratio: 2.263205e+00	ci left: 4.403808e-07	ci right 1.313573e-05	k: 2	n:550000
C9orf150   550000 perm   189 sec   (2906 perm/sec)   p_kst 3.636364e-06   p_cons 9.952473e-01   p_joint 2.363636e-05

Joint ci ratio: 1.047650e+00	ci left: 1.236069e-05	ci right 3.969681e-05	k: 13	n:560000
Cons ci ratio: 3.622951e-04	ci left: 9.950573e-01	ci right 9.954196e-01	k: 557335	n:560000
KS ci ratio: 2.263205e+00	ci left: 4.325169e-07	ci right 1.290117e-05	k: 2	n:560000
C9orf150   560000 perm   195 sec   (2877 perm/sec)   p_kst 3.571429e-06   p_cons 9.952411e-01   p_joint 2.321429e-05

Joint ci ratio: 1.012125e+00	ci left: 1.342801e-05	ci right 4.120952e-05	k: 14	n:570000
Cons ci ratio: 3.586635e-04	ci left: 9.950708e-01	ci right 9.954294e-01	k: 567294	n:570000
KS ci ratio: 2.263205e+00	ci left: 4.249288e-07	ci right 1.267483e-05	k: 2	n:570000
C9orf150   570000 perm   200 sec   (2849 perm/sec)   p_kst 3.508772e-06   p_cons 9.952526e-01   p_joint 2.456140e-05

Joint ci ratio: 1.012126e+00	ci left: 1.319649e-05	ci right 4.049902e-05	k: 14	n:580000
Cons ci ratio: 3.555263e-04	ci left: 9.950732e-01	ci right 9.954287e-01	k: 577247	n:580000
KS ci ratio: 2.263205e+00	ci left: 4.176025e-07	ci right 1.245630e-05	k: 2	n:580000
C9orf150   580000 perm   205 sec   (2824 perm/sec)   p_kst 3.448276e-06   p_cons 9.952534e-01   p_joint 2.413793e-05

Joint ci ratio: 1.012126e+00	ci left: 1.297282e-05	ci right 3.981260e-05	k: 14	n:590000
Cons ci ratio: 3.522803e-04	ci left: 9.950807e-01	ci right 9.954330e-01	k: 587203	n:590000
KS ci ratio: 2.263205e+00	ci left: 4.105245e-07	ci right 1.224518e-05	k: 2	n:590000
C9orf150   590000 perm   211 sec   (2799 perm/sec)   p_kst 3.389831e-06   p_cons 9.952593e-01   p_joint 2.372881e-05

Joint ci ratio: 1.012126e+00	ci left: 1.275661e-05	ci right 3.914906e-05	k: 14	n:600000
Cons ci ratio: 3.482560e-04	ci left: 9.951118e-01	ci right 9.954600e-01	k: 597173	n:600000
KS ci ratio: 2.263206e+00	ci left: 4.036824e-07	ci right 1.204109e-05	k: 2	n:600000
C9orf150   600000 perm   216 sec   (2773 perm/sec)   p_kst 3.333333e-06   p_cons 9.952883e-01   p_joint 2.333333e-05

Joint ci ratio: 1.012126e+00	ci left: 1.254748e-05	ci right 3.850728e-05	k: 14	n:610000
Cons ci ratio: 3.452005e-04	ci left: 9.951185e-01	ci right 9.954637e-01	k: 607129	n:610000
KS ci ratio: 2.263206e+00	ci left: 3.970646e-07	ci right 1.184370e-05	k: 2	n:610000
C9orf150   610000 perm   222 sec   (2747 perm/sec)   p_kst 3.278689e-06   p_cons 9.952934e-01   p_joint 2.295082e-05

Joint ci ratio: 1.012127e+00	ci left: 1.234510e-05	ci right 3.788620e-05	k: 14	n:620000
Cons ci ratio: 3.426362e-04	ci left: 9.951135e-01	ci right 9.954561e-01	k: 617078	n:620000
KS ci ratio: 2.263206e+00	ci left: 3.906604e-07	ci right 1.165267e-05	k: 2	n:620000
C9orf150   620000 perm   228 sec   (2722 perm/sec)   p_kst 3.225806e-06   p_cons 9.952871e-01   p_joint 2.258065e-05

Joint ci ratio: 1.012127e+00	ci left: 1.214915e-05	ci right 3.728483e-05	k: 14	n:630000
Cons ci ratio: 3.394374e-04	ci left: 9.951280e-01	ci right 9.954674e-01	k: 627039	n:630000
KS ci ratio: 2.263206e+00	ci left: 3.844594e-07	ci right 1.146771e-05	k: 2	n:630000
C9orf150   630000 perm   234 sec   (2697 perm/sec)   p_kst 3.174603e-06   p_cons 9.953000e-01   p_joint 2.222222e-05

Joint ci ratio: 1.012127e+00	ci left: 1.195932e-05	ci right 3.670226e-05	k: 14	n:640000
Cons ci ratio: 3.369428e-04	ci left: 9.951246e-01	ci right 9.954615e-01	k: 636989	n:640000
KS ci ratio: 2.263206e+00	ci left: 3.784522e-07	ci right 1.128853e-05	k: 2	n:640000
C9orf150   640000 perm   239 sec   (2673 perm/sec)   p_kst 3.125000e-06   p_cons 9.952953e-01   p_joint 2.187500e-05

Joint ci ratio: 9.799872e-01	ci left: 1.291603e-05	ci right 3.806159e-05	k: 15	n:650000
Cons ci ratio: 3.341178e-04	ci left: 9.951323e-01	ci right 9.954663e-01	k: 646946	n:650000
KS ci ratio: 1.959992e+00	ci left: 9.518043e-07	ci right 1.348805e-05	k: 3	n:650000
C9orf150   650000 perm   245 sec   (2649 perm/sec)   p_kst 4.615385e-06   p_cons 9.953015e-01   p_joint 2.307692e-05

Joint ci ratio: 9.507267e-01	ci left: 1.385670e-05	ci right 3.936788e-05	k: 16	n:660000
Cons ci ratio: 3.318454e-04	ci left: 9.951259e-01	ci right 9.954576e-01	k: 656894	n:660000
KS ci ratio: 1.959993e+00	ci left: 9.373830e-07	ci right 1.328369e-05	k: 3	n:660000
C9orf150   660000 perm   251 sec   (2627 perm/sec)   p_kst 4.545455e-06   p_cons 9.952939e-01   p_joint 2.424242e-05

Joint ci ratio: 9.507269e-01	ci left: 1.364988e-05	ci right 3.878030e-05	k: 16	n:670000
Cons ci ratio: 3.295654e-04	ci left: 9.951212e-01	ci right 9.954506e-01	k: 666843	n:670000
KS ci ratio: 1.959993e+00	ci left: 9.233922e-07	ci right 1.308543e-05	k: 3	n:670000
C9orf150   670000 perm   257 sec   (2604 perm/sec)   p_kst 4.477612e-06   p_cons 9.952881e-01   p_joint 2.388060e-05

Joint ci ratio: 9.507271e-01	ci left: 1.344915e-05	ci right 3.821001e-05	k: 16	n:680000
Cons ci ratio: 3.272288e-04	ci left: 9.951196e-01	ci right 9.954467e-01	k: 676794	n:680000
KS ci ratio: 1.959993e+00	ci left: 9.098129e-07	ci right 1.289299e-05	k: 3	n:680000
C9orf150   680000 perm   264 sec   (2580 perm/sec)   p_kst 4.411765e-06   p_cons 9.952853e-01   p_joint 2.352941e-05

Joint ci ratio: 9.507272e-01	ci left: 1.325423e-05	ci right 3.765625e-05	k: 16	n:690000
Cons ci ratio: 3.244394e-04	ci left: 9.951328e-01	ci right 9.954572e-01	k: 686755	n:690000
KS ci ratio: 1.959993e+00	ci left: 8.966272e-07	ci right 1.270614e-05	k: 3	n:690000
C9orf150   690000 perm   270 sec   (2554 perm/sec)   p_kst 4.347826e-06   p_cons 9.952971e-01   p_joint 2.318841e-05

Joint ci ratio: 9.239403e-01	ci left: 1.414739e-05	ci right 3.888350e-05	k: 17	n:700000
Cons ci ratio: 3.223080e-04	ci left: 9.951283e-01	ci right 9.954505e-01	k: 696704	n:700000
KS ci ratio: 1.959993e+00	ci left: 8.838182e-07	ci right 1.252462e-05	k: 3	n:700000
C9orf150   700000 perm   277 sec   (2531 perm/sec)   p_kst 4.285714e-06   p_cons 9.952914e-01   p_joint 2.428571e-05

Joint ci ratio: 9.239405e-01	ci left: 1.394813e-05	ci right 3.833585e-05	k: 17	n:710000
Cons ci ratio: 3.203138e-04	ci left: 9.951210e-01	ci right 9.954412e-01	k: 706651	n:710000
KS ci ratio: 1.959993e+00	ci left: 8.713700e-07	ci right 1.234822e-05	k: 3	n:710000
C9orf150   710000 perm   283 sec   (2511 perm/sec)   p_kst 4.225352e-06   p_cons 9.952831e-01   p_joint 2.394366e-05

Joint ci ratio: 9.239407e-01	ci left: 1.375440e-05	ci right 3.780341e-05	k: 17	n:720000
Cons ci ratio: 3.178377e-04	ci left: 9.951294e-01	ci right 9.954471e-01	k: 716609	n:720000
KS ci ratio: 1.959993e+00	ci left: 8.592677e-07	ci right 1.217672e-05	k: 3	n:720000
C9orf150   720000 perm   289 sec   (2490 perm/sec)   p_kst 4.166667e-06   p_cons 9.952903e-01   p_joint 2.361111e-05

Joint ci ratio: 9.239408e-01	ci left: 1.356598e-05	ci right 3.728556e-05	k: 17	n:730000
Cons ci ratio: 3.159707e-04	ci left: 9.951209e-01	ci right 9.954368e-01	k: 726555	n:730000
KS ci ratio: 1.959993e+00	ci left: 8.474969e-07	ci right 1.200992e-05	k: 3	n:730000
C9orf150   730000 perm   296 sec   (2470 perm/sec)   p_kst 4.109589e-06   p_cons 9.952808e-01   p_joint 2.328767e-05

Joint ci ratio: 9.239410e-01	ci left: 1.338266e-05	ci right 3.678170e-05	k: 17	n:740000
Cons ci ratio: 3.137290e-04	ci left: 9.951251e-01	ci right 9.954386e-01	k: 736510	n:740000
KS ci ratio: 1.959993e+00	ci left: 8.360442e-07	ci right 1.184762e-05	k: 3	n:740000
C9orf150   740000 perm   302 sec   (2449 perm/sec)   p_kst 4.054054e-06   p_cons 9.952838e-01   p_joint 2.297297e-05

Joint ci ratio: 9.239412e-01	ci left: 1.320422e-05	ci right 3.629128e-05	k: 17	n:750000
Cons ci ratio: 3.117996e-04	ci left: 9.951209e-01	ci right 9.954326e-01	k: 746459	n:750000
KS ci ratio: 1.959993e+00	ci left: 8.248969e-07	ci right 1.168965e-05	k: 3	n:750000
C9orf150   750000 perm   309 sec   (2429 perm/sec)   p_kst 4.000000e-06   p_cons 9.952787e-01   p_joint 2.266667e-05

Joint ci ratio: 9.239413e-01	ci left: 1.303048e-05	ci right 3.581377e-05	k: 17	n:760000
Cons ci ratio: 3.100783e-04	ci left: 9.951116e-01	ci right 9.954215e-01	k: 756404	n:760000
KS ci ratio: 1.959994e+00	ci left: 8.140430e-07	ci right 1.153584e-05	k: 3	n:760000
C9orf150   760000 perm   315 sec   (2409 perm/sec)   p_kst 3.947368e-06   p_cons 9.952684e-01   p_joint 2.236842e-05

Joint ci ratio: 8.992980e-01	ci left: 1.385453e-05	ci right 3.694489e-05	k: 18	n:770000
Cons ci ratio: 3.081717e-04	ci left: 9.951091e-01	ci right 9.954171e-01	k: 766354	n:770000
KS ci ratio: 1.959994e+00	ci left: 8.034710e-07	ci right 1.138603e-05	k: 3	n:770000
C9orf150   770000 perm   322 sec   (2389 perm/sec)   p_kst 3.896104e-06   p_cons 9.952649e-01   p_joint 2.337662e-05

Joint ci ratio: 9.239416e-01	ci left: 1.269637e-05	ci right 3.489547e-05	k: 17	n:780000
Cons ci ratio: 3.280602e-04	ci left: 9.944023e-01	ci right 9.947299e-01	k: 775763	n:780000
KS ci ratio: 1.959994e+00	ci left: 7.931701e-07	ci right 1.124005e-05	k: 3	n:780000
C9orf150   780000 perm   329 sec   (2369 perm/sec)   p_kst 3.846154e-06   p_cons 9.945679e-01   p_joint 2.179487e-05

Joint ci ratio: 9.239417e-01	ci left: 1.253565e-05	ci right 3.445376e-05	k: 17	n:790000
Cons ci ratio: 3.260409e-04	ci left: 9.944012e-01	ci right 9.947268e-01	k: 785707	n:790000
KS ci ratio: 1.959994e+00	ci left: 7.831300e-07	ci right 1.109777e-05	k: 3	n:790000
C9orf150   790000 perm   336 sec   (2350 perm/sec)   p_kst 3.797468e-06   p_cons 9.945658e-01   p_joint 2.151899e-05

Joint ci ratio: 9.239419e-01	ci left: 1.237896e-05	ci right 3.402309e-05	k: 17	n:800000
Cons ci ratio: 3.237587e-04	ci left: 9.944103e-01	ci right 9.947336e-01	k: 795659	n:800000
KS ci ratio: 1.959994e+00	ci left: 7.733408e-07	ci right 1.095905e-05	k: 3	n:800000
C9orf150   800000 perm   343 sec   (2331 perm/sec)   p_kst 3.750000e-06   p_cons 9.945738e-01   p_joint 2.125000e-05

Joint ci ratio: 8.992986e-01	ci left: 1.317035e-05	ci right 3.512047e-05	k: 18	n:810000
Cons ci ratio: 3.217438e-04	ci left: 9.944117e-01	ci right 9.947329e-01	k: 805605	n:810000
KS ci ratio: 1.959994e+00	ci left: 7.637934e-07	ci right 1.082376e-05	k: 3	n:810000
C9orf150   810000 perm   350 sec   (2314 perm/sec)   p_kst 3.703704e-06   p_cons 9.945741e-01   p_joint 2.222222e-05

Joint ci ratio: 8.765274e-01	ci left: 1.395035e-05	ci right 3.618373e-05	k: 19	n:820000
Cons ci ratio: 3.200550e-04	ci left: 9.944031e-01	ci right 9.947226e-01	k: 815543	n:820000
KS ci ratio: 1.959994e+00	ci left: 7.544788e-07	ci right 1.069176e-05	k: 3	n:820000
C9orf150   820000 perm   357 sec   (2295 perm/sec)   p_kst 3.658537e-06   p_cons 9.945646e-01   p_joint 2.317073e-05

Joint ci ratio: 8.765276e-01	ci left: 1.378227e-05	ci right 3.574779e-05	k: 19	n:830000
Cons ci ratio: 3.182854e-04	ci left: 9.943984e-01	ci right 9.947162e-01	k: 825484	n:830000
KS ci ratio: 1.959994e+00	ci left: 7.453887e-07	ci right 1.056294e-05	k: 3	n:830000
C9orf150   830000 perm   365 sec   (2275 perm/sec)   p_kst 3.614458e-06   p_cons 9.945590e-01   p_joint 2.289157e-05

Joint ci ratio: 8.765277e-01	ci left: 1.361820e-05	ci right 3.532222e-05	k: 19	n:840000
Cons ci ratio: 3.167183e-04	ci left: 9.943878e-01	ci right 9.947040e-01	k: 835420	n:840000
KS ci ratio: 1.959994e+00	ci left: 7.365150e-07	ci right 1.043719e-05	k: 3	n:840000
C9orf150   840000 perm   372 sec   (2257 perm/sec)   p_kst 3.571429e-06   p_cons 9.945476e-01   p_joint 2.261905e-05

Joint ci ratio: 9.239425e-01	ci left: 1.165078e-05	ci right 3.202174e-05	k: 17	n:850000
Cons ci ratio: 3.149338e-04	ci left: 9.943858e-01	ci right 9.947002e-01	k: 845363	n:850000
KS ci ratio: 1.959994e+00	ci left: 7.278501e-07	ci right 1.031440e-05	k: 3	n:850000
C9orf150   850000 perm   380 sec   (2239 perm/sec)   p_kst 3.529412e-06   p_cons 9.945447e-01   p_joint 2.000000e-05

Joint ci ratio: 9.239427e-01	ci left: 1.151530e-05	ci right 3.164940e-05	k: 17	n:860000
Cons ci ratio: 3.131121e-04	ci left: 9.943862e-01	ci right 9.946988e-01	k: 855308	n:860000
KS ci ratio: 1.959994e+00	ci left: 7.193868e-07	ci right 1.019447e-05	k: 3	n:860000
C9orf150   860000 perm   387 sec   (2221 perm/sec)   p_kst 3.488372e-06   p_cons 9.945442e-01   p_joint 1.976744e-05

Joint ci ratio: 8.992993e-01	ci left: 1.226205e-05	ci right 3.269838e-05	k: 18	n:870000
Cons ci ratio: 3.114205e-04	ci left: 9.943832e-01	ci right 9.946940e-01	k: 865250	n:870000
KS ci ratio: 1.959994e+00	ci left: 7.111179e-07	ci right 1.007729e-05	k: 3	n:870000
C9orf150   870000 perm   395 sec   (2204 perm/sec)   p_kst 3.448276e-06   p_cons 9.945402e-01   p_joint 2.068966e-05

Joint ci ratio: 9.799905e-01	ci left: 9.540242e-06	ci right 2.811373e-05	k: 15	n:880000
Cons ci ratio: 3.097558e-04	ci left: 9.943801e-01	ci right 9.946893e-01	k: 875192	n:880000
KS ci ratio: 1.959994e+00	ci left: 7.030371e-07	ci right 9.962778e-06	k: 3	n:880000
C9orf150   880000 perm   402 sec   (2187 perm/sec)   p_kst 3.409091e-06   p_cons 9.945364e-01   p_joint 1.704545e-05

Joint ci ratio: 9.799906e-01	ci left: 9.433048e-06	ci right 2.779785e-05	k: 15	n:890000
Cons ci ratio: 3.079901e-04	ci left: 9.943818e-01	ci right 9.946892e-01	k: 885138	n:890000
KS ci ratio: 1.959994e+00	ci left: 6.951378e-07	ci right 9.850837e-06	k: 3	n:890000
C9orf150   890000 perm   410 sec   (2169 perm/sec)   p_kst 3.370787e-06   p_cons 9.945371e-01   p_joint 1.685393e-05

Joint ci ratio: 9.507301e-01	ci left: 1.016157e-05	ci right 2.886984e-05	k: 16	n:900000
Cons ci ratio: 3.059409e-04	ci left: 9.943946e-01	ci right 9.947000e-01	k: 895094	n:900000
KS ci ratio: 1.959995e+00	ci left: 6.874140e-07	ci right 9.741383e-06	k: 3	n:900000
C9orf150   900000 perm   418 sec   (2153 perm/sec)   p_kst 3.333333e-06   p_cons 9.945489e-01   p_joint 1.777778e-05

Joint ci ratio: 9.507302e-01	ci left: 1.004990e-05	ci right 2.855259e-05	k: 16	n:910000
Cons ci ratio: 3.043317e-04	ci left: 9.943927e-01	ci right 9.946964e-01	k: 905037	n:910000
KS ci ratio: 1.959995e+00	ci left: 6.798600e-07	ci right 9.634335e-06	k: 3	n:910000
C9orf150   910000 perm   426 sec   (2138 perm/sec)   p_kst 3.296703e-06   p_cons 9.945462e-01   p_joint 1.758242e-05

Joint ci ratio: 9.507303e-01	ci left: 9.940665e-06	ci right 2.824224e-05	k: 16	n:920000
Cons ci ratio: 3.028687e-04	ci left: 9.943864e-01	ci right 9.946887e-01	k: 914976	n:920000
KS ci ratio: 1.959995e+00	ci left: 6.724702e-07	ci right 9.529615e-06	k: 3	n:920000
C9orf150   920000 perm   434 sec   (2122 perm/sec)   p_kst 3.260870e-06   p_cons 9.945391e-01   p_joint 1.739130e-05

Joint ci ratio: 9.239434e-01	ci left: 1.064856e-05	ci right 2.926720e-05	k: 17	n:930000
Cons ci ratio: 3.010386e-04	ci left: 9.943945e-01	ci right 9.946949e-01	k: 924928	n:930000
KS ci ratio: 1.959995e+00	ci left: 6.652393e-07	ci right 9.427146e-06	k: 3	n:930000
C9orf150   930000 perm   442 sec   (2106 perm/sec)   p_kst 3.225806e-06   p_cons 9.945462e-01   p_joint 1.827957e-05

Joint ci ratio: 9.239435e-01	ci left: 1.053528e-05	ci right 2.895585e-05	k: 17	n:940000
Cons ci ratio: 2.995343e-04	ci left: 9.943916e-01	ci right 9.946905e-01	k: 934870	n:940000
KS ci ratio: 1.959995e+00	ci left: 6.581623e-07	ci right 9.326858e-06	k: 3	n:940000
C9orf150   940000 perm   450 sec   (2090 perm/sec)   p_kst 3.191489e-06   p_cons 9.945426e-01   p_joint 1.808511e-05

Joint ci ratio: 9.239436e-01	ci left: 1.042438e-05	ci right 2.865105e-05	k: 17	n:950000
Cons ci ratio: 2.983121e-04	ci left: 9.943791e-01	ci right 9.946768e-01	k: 944803	n:950000
KS ci ratio: 1.959995e+00	ci left: 6.512343e-07	ci right 9.228680e-06	k: 3	n:950000
C9orf150   950000 perm   458 sec   (2074 perm/sec)   p_kst 3.157895e-06   p_cons 9.945295e-01   p_joint 1.789474e-05

Joint ci ratio: 9.239437e-01	ci left: 1.031579e-05	ci right 2.835261e-05	k: 17	n:960000
Cons ci ratio: 2.965635e-04	ci left: 9.943870e-01	ci right 9.946829e-01	k: 954755	n:960000
KS ci ratio: 1.959995e+00	ci left: 6.444506e-07	ci right 9.132549e-06	k: 3	n:960000
C9orf150   960000 perm   466 sec   (2060 perm/sec)   p_kst 3.125000e-06   p_cons 9.945365e-01   p_joint 1.770833e-05

Joint ci ratio: 9.239438e-01	ci left: 1.020944e-05	ci right 2.806031e-05	k: 17	n:970000
Cons ci ratio: 2.950688e-04	ci left: 9.943863e-01	ci right 9.946808e-01	k: 964699	n:970000
KS ci ratio: 1.959995e+00	ci left: 6.378068e-07	ci right 9.038399e-06	k: 3	n:970000
C9orf150   970000 perm   474 sec   (2046 perm/sec)   p_kst 3.092784e-06   p_cons 9.945351e-01   p_joint 1.752577e-05

Joint ci ratio: 9.239439e-01	ci left: 1.010526e-05	ci right 2.777398e-05	k: 17	n:980000
Cons ci ratio: 2.933759e-04	ci left: 9.943940e-01	ci right 9.946868e-01	k: 974651	n:980000
KS ci ratio: 1.959995e+00	ci left: 6.312985e-07	ci right 8.946171e-06	k: 3	n:980000
C9orf150   980000 perm   483 sec   (2031 perm/sec)   p_kst 3.061224e-06   p_cons 9.945418e-01   p_joint 1.734694e-05

Joint ci ratio: 9.239440e-01	ci left: 1.000319e-05	ci right 2.749344e-05	k: 17	n:990000
Cons ci ratio: 2.915756e-04	ci left: 9.944066e-01	ci right 9.946976e-01	k: 984608	n:990000
KS ci ratio: 1.959995e+00	ci left: 6.249218e-07	ci right 8.855806e-06	k: 3	n:990000
C9orf150   990000 perm   491 sec   (2016 perm/sec)   p_kst 3.030303e-06   p_cons 9.945535e-01   p_joint 1.717172e-05

Joint ci ratio: 9.239441e-01	ci left: 9.903157e-06	ci right 2.721851e-05	k: 17	n:1000000
Cons ci ratio: 2.904492e-04	ci left: 9.943946e-01	ci right 9.946845e-01	k: 994541	n:1000000
KS ci ratio: 1.959995e+00	ci left: 6.186726e-07	ci right 8.767248e-06	k: 3	n:1000000
C9orf150   1000000 perm   500 sec   (2002 perm/sec)   p_kst 3.000000e-06   p_cons 9.945410e-01   p_joint 1.700000e-05

Joint ci ratio: 9.239442e-01	ci left: 9.805105e-06	ci right 2.694902e-05	k: 17	n:1010000
Cons ci ratio: 2.890183e-04	ci left: 9.943950e-01	ci right 9.946834e-01	k: 1004486	n:1010000
KS ci ratio: 1.959995e+00	ci left: 6.125471e-07	ci right 8.680444e-06	k: 3	n:1010000
C9orf150   1010000 perm   508 sec   (1988 perm/sec)   p_kst 2.970297e-06   p_cons 9.945406e-01   p_joint 1.683168e-05

Joint ci ratio: 9.239443e-01	ci left: 9.708977e-06	ci right 2.668481e-05	k: 17	n:1020000
Cons ci ratio: 2.874266e-04	ci left: 9.944022e-01	ci right 9.946891e-01	k: 1014438	n:1020000
KS ci ratio: 1.959995e+00	ci left: 6.065417e-07	ci right 8.595341e-06	k: 3	n:1020000
C9orf150   1020000 perm   517 sec   (1974 perm/sec)   p_kst 2.941176e-06   p_cons 9.945471e-01   p_joint 1.666667e-05

Joint ci ratio: 8.993009e-01	ci left: 1.035726e-05	ci right 2.761904e-05	k: 18	n:1030000
Cons ci ratio: 2.857836e-04	ci left: 9.944123e-01	ci right 9.946975e-01	k: 1024393	n:1030000
KS ci ratio: 1.959995e+00	ci left: 6.006529e-07	ci right 8.511892e-06	k: 3	n:1030000
C9orf150   1030000 perm   526 sec   (1960 perm/sec)   p_kst 2.912621e-06   p_cons 9.945563e-01   p_joint 1.747573e-05

Joint ci ratio: 8.765298e-01	ci left: 1.099931e-05	ci right 2.852952e-05	k: 19	n:1040000
Cons ci ratio: 2.846727e-04	ci left: 9.944027e-01	ci right 9.946868e-01	k: 1034328	n:1040000
KS ci ratio: 1.959995e+00	ci left: 5.948774e-07	ci right 8.430047e-06	k: 3	n:1040000
C9orf150   1040000 perm   534 sec   (1948 perm/sec)   p_kst 2.884615e-06   p_cons 9.945462e-01   p_joint 1.826923e-05

Joint ci ratio: 8.765299e-01	ci left: 1.089455e-05	ci right 2.825781e-05	k: 19	n:1050000
Cons ci ratio: 2.835737e-04	ci left: 9.943933e-01	ci right 9.946763e-01	k: 1044263	n:1050000
KS ci ratio: 1.959995e+00	ci left: 5.892119e-07	ci right 8.349761e-06	k: 3	n:1050000
C9orf150   1050000 perm   543 sec   (1935 perm/sec)   p_kst 2.857143e-06   p_cons 9.945362e-01   p_joint 1.809524e-05

Joint ci ratio: 8.765300e-01	ci left: 1.079177e-05	ci right 2.799123e-05	k: 19	n:1060000
Cons ci ratio: 2.822415e-04	ci left: 9.943937e-01	ci right 9.946753e-01	k: 1054208	n:1060000
KS ci ratio: 1.959995e+00	ci left: 5.836533e-07	ci right 8.270990e-06	k: 3	n:1060000
C9orf150   1060000 perm   552 sec   (1922 perm/sec)   p_kst 2.830189e-06   p_cons 9.945358e-01   p_joint 1.792453e-05

Joint ci ratio: 8.554053e-01	ci left: 1.141734e-05	ci right 2.886750e-05	k: 20	n:1070000
Cons ci ratio: 2.807347e-04	ci left: 9.944016e-01	ci right 9.946817e-01	k: 1064161	n:1070000
KS ci ratio: 1.753072e+00	ci left: 1.018567e-06	ci right 9.571550e-06	k: 4	n:1070000
C9orf150   1070000 perm   560 sec   (1909 perm/sec)   p_kst 3.738318e-06   p_cons 9.945430e-01   p_joint 1.869159e-05

Joint ci ratio: 8.554054e-01	ci left: 1.131163e-05	ci right 2.860021e-05	k: 20	n:1080000
Cons ci ratio: 2.795135e-04	ci left: 9.943990e-01	ci right 9.946779e-01	k: 1074103	n:1080000
KS ci ratio: 1.753072e+00	ci left: 1.009135e-06	ci right 9.482925e-06	k: 4	n:1080000
C9orf150   1080000 perm   569 sec   (1897 perm/sec)   p_kst 3.703704e-06   p_cons 9.945398e-01   p_joint 1.851852e-05

Joint ci ratio: 8.554055e-01	ci left: 1.120785e-05	ci right 2.833782e-05	k: 20	n:1090000
Cons ci ratio: 2.780025e-04	ci left: 9.944086e-01	ci right 9.946860e-01	k: 1084058	n:1090000
KS ci ratio: 1.753072e+00	ci left: 9.998774e-07	ci right 9.395926e-06	k: 4	n:1090000
C9orf150   1090000 perm   579 sec   (1884 perm/sec)   p_kst 3.669725e-06   p_cons 9.945486e-01   p_joint 1.834862e-05

Joint ci ratio: 8.554056e-01	ci left: 1.110596e-05	ci right 2.808020e-05	k: 20	n:1100000
Cons ci ratio: 2.766774e-04	ci left: 9.944116e-01	ci right 9.946876e-01	k: 1094006	n:1100000
KS ci ratio: 1.753073e+00	ci left: 9.907876e-07	ci right 9.310509e-06	k: 4	n:1100000
C9orf150   1100000 perm   588 sec   (1872 perm/sec)   p_kst 3.636364e-06   p_cons 9.945509e-01   p_joint 1.818182e-05

Joint ci ratio: 8.765304e-01	ci left: 1.030565e-05	ci right 2.673037e-05	k: 19	n:1110000
Cons ci ratio: 2.753711e-04	ci left: 9.944145e-01	ci right 9.946892e-01	k: 1103954	n:1110000
KS ci ratio: 1.753073e+00	ci left: 9.818615e-07	ci right 9.226631e-06	k: 4	n:1110000
C9orf150   1110000 perm   597 sec   (1859 perm/sec)   p_kst 3.603604e-06   p_cons 9.945532e-01   p_joint 1.711712e-05

Joint ci ratio: 8.765304e-01	ci left: 1.021364e-05	ci right 2.649171e-05	k: 19	n:1120000
Cons ci ratio: 2.739022e-04	ci left: 9.944246e-01	ci right 9.946979e-01	k: 1113910	n:1120000
KS ci ratio: 1.753073e+00	ci left: 9.730949e-07	ci right 9.144250e-06	k: 4	n:1120000
C9orf150   1120000 perm   606 sec   (1847 perm/sec)   p_kst 3.571429e-06   p_cons 9.945625e-01   p_joint 1.696429e-05

Joint ci ratio: 8.765305e-01	ci left: 1.012325e-05	ci right 2.625727e-05	k: 19	n:1130000
Cons ci ratio: 2.728128e-04	ci left: 9.944202e-01	ci right 9.946923e-01	k: 1123850	n:1130000
KS ci ratio: 1.753073e+00	ci left: 9.644834e-07	ci right 9.063328e-06	k: 4	n:1130000
C9orf150   1130000 perm   615 sec   (1836 perm/sec)   p_kst 3.539823e-06   p_cons 9.945575e-01   p_joint 1.681416e-05

Joint ci ratio: 8.765306e-01	ci left: 1.003445e-05	ci right 2.602694e-05	k: 19	n:1140000
Cons ci ratio: 2.715381e-04	ci left: 9.944238e-01	ci right 9.946947e-01	k: 1133799	n:1140000
KS ci ratio: 1.753073e+00	ci left: 9.560231e-07	ci right 8.983825e-06	k: 4	n:1140000
C9orf150   1140000 perm   625 sec   (1824 perm/sec)   p_kst 3.508772e-06   p_cons 9.945605e-01   p_joint 1.666667e-05

Joint ci ratio: 8.765306e-01	ci left: 9.947195e-06	ci right 2.580062e-05	k: 19	n:1150000
Cons ci ratio: 2.706284e-04	ci left: 9.944133e-01	ci right 9.946833e-01	k: 1143732	n:1150000
KS ci ratio: 1.753073e+00	ci left: 9.477098e-07	ci right 8.905705e-06	k: 4	n:1150000
C9orf150   1150000 perm   634 sec   (1814 perm/sec)   p_kst 3.478261e-06   p_cons 9.945496e-01   p_joint 1.652174e-05

Joint ci ratio: 8.765307e-01	ci left: 9.861443e-06	ci right 2.557820e-05	k: 19	n:1160000
Cons ci ratio: 2.695127e-04	ci left: 9.944117e-01	ci right 9.946806e-01	k: 1153675	n:1160000
KS ci ratio: 1.753073e+00	ci left: 9.395399e-07	ci right 8.828932e-06	k: 4	n:1160000
C9orf150   1160000 perm   643 sec   (1803 perm/sec)   p_kst 3.448276e-06   p_cons 9.945474e-01   p_joint 1.637931e-05

Joint ci ratio: 9.239454e-01	ci left: 8.464233e-06	ci right 2.326370e-05	k: 17	n:1170000
Cons ci ratio: 2.683048e-04	ci left: 9.944145e-01	ci right 9.946822e-01	k: 1163623	n:1170000
KS ci ratio: 1.753073e+00	ci left: 9.315096e-07	ci right 8.753471e-06	k: 4	n:1170000
C9orf150   1170000 perm   653 sec   (1791 perm/sec)   p_kst 3.418803e-06   p_cons 9.945496e-01   p_joint 1.452991e-05

Joint ci ratio: 9.239454e-01	ci left: 8.392502e-06	ci right 2.306655e-05	k: 17	n:1180000
Cons ci ratio: 2.674887e-04	ci left: 9.944018e-01	ci right 9.946687e-01	k: 1173553	n:1180000
KS ci ratio: 1.753073e+00	ci left: 9.236155e-07	ci right 8.679289e-06	k: 4	n:1180000
C9orf150   1180000 perm   663 sec   (1779 perm/sec)   p_kst 3.389831e-06   p_cons 9.945364e-01   p_joint 1.440678e-05

Joint ci ratio: 8.993021e-01	ci left: 8.964680e-06	ci right 2.390558e-05	k: 18	n:1190000
Cons ci ratio: 2.661844e-04	ci left: 9.944097e-01	ci right 9.946753e-01	k: 1183507	n:1190000
KS ci ratio: 1.753073e+00	ci left: 9.158540e-07	ci right 8.606354e-06	k: 4	n:1190000
C9orf150   1190000 perm   673 sec   (1768 perm/sec)   p_kst 3.361345e-06   p_cons 9.945437e-01   p_joint 1.512605e-05

Joint ci ratio: 8.765310e-01	ci left: 9.532727e-06	ci right 2.472560e-05	k: 19	n:1200000
Cons ci ratio: 2.651020e-04	ci left: 9.944091e-01	ci right 9.946735e-01	k: 1193451	n:1200000
KS ci ratio: 1.753073e+00	ci left: 9.082219e-07	ci right 8.534635e-06	k: 4	n:1200000
C9orf150   1200000 perm   683 sec   (1757 perm/sec)   p_kst 3.333333e-06   p_cons 9.945425e-01   p_joint 1.583333e-05

Joint ci ratio: 8.993022e-01	ci left: 8.816503e-06	ci right 2.351044e-05	k: 18	n:1210000
Cons ci ratio: 2.641131e-04	ci left: 9.944051e-01	ci right 9.946686e-01	k: 1203391	n:1210000
KS ci ratio: 1.753073e+00	ci left: 9.007159e-07	ci right 8.464101e-06	k: 4	n:1210000
C9orf150   1210000 perm   693 sec   (1746 perm/sec)   p_kst 3.305785e-06   p_cons 9.945380e-01   p_joint 1.487603e-05

Joint ci ratio: 8.993023e-01	ci left: 8.744236e-06	ci right 2.331774e-05	k: 18	n:1220000
Cons ci ratio: 2.629168e-04	ci left: 9.944103e-01	ci right 9.946726e-01	k: 1213342	n:1220000
KS ci ratio: 1.753073e+00	ci left: 8.933330e-07	ci right 8.394723e-06	k: 4	n:1220000
C9orf150   1220000 perm   703 sec   (1735 perm/sec)   p_kst 3.278689e-06   p_cons 9.945426e-01   p_joint 1.475410e-05

Joint ci ratio: 8.993024e-01	ci left: 8.673145e-06	ci right 2.312816e-05	k: 18	n:1230000
Cons ci ratio: 2.617756e-04	ci left: 9.944138e-01	ci right 9.946749e-01	k: 1223291	n:1230000
KS ci ratio: 1.753073e+00	ci left: 8.860701e-07	ci right 8.326474e-06	k: 4	n:1230000
C9orf150   1230000 perm   713 sec   (1725 perm/sec)   p_kst 3.252033e-06   p_cons 9.945455e-01   p_joint 1.463415e-05

Joint ci ratio: 8.993024e-01	ci left: 8.603200e-06	ci right 2.294165e-05	k: 18	n:1240000
Cons ci ratio: 2.606491e-04	ci left: 9.944172e-01	ci right 9.946772e-01	k: 1233240	n:1240000
KS ci ratio: 1.753073e+00	ci left: 8.789244e-07	ci right 8.259325e-06	k: 4	n:1240000
C9orf150   1240000 perm   723 sec   (1714 perm/sec)   p_kst 3.225806e-06   p_cons 9.945484e-01   p_joint 1.451613e-05

Joint ci ratio: 8.993025e-01	ci left: 8.534374e-06	ci right 2.275811e-05	k: 18	n:1250000
Cons ci ratio: 2.595369e-04	ci left: 9.944206e-01	ci right 9.946795e-01	k: 1243189	n:1250000
KS ci ratio: 1.753073e+00	ci left: 8.718930e-07	ci right 8.193250e-06	k: 4	n:1250000
C9orf150   1250000 perm   734 sec   (1703 perm/sec)   p_kst 3.200000e-06   p_cons 9.945512e-01   p_joint 1.440000e-05

Joint ci ratio: 8.993025e-01	ci left: 8.466641e-06	ci right 2.257749e-05	k: 18	n:1260000
Cons ci ratio: 2.586280e-04	ci left: 9.944159e-01	ci right 9.946739e-01	k: 1253128	n:1260000
KS ci ratio: 1.753073e+00	ci left: 8.649732e-07	ci right 8.128225e-06	k: 4	n:1260000
C9orf150   1260000 perm   744 sec   (1693 perm/sec)   p_kst 3.174603e-06   p_cons 9.945460e-01   p_joint 1.428571e-05

Joint ci ratio: 9.239459e-01	ci left: 7.797756e-06	ci right 2.143192e-05	k: 17	n:1270000
Cons ci ratio: 2.574479e-04	ci left: 9.944232e-01	ci right 9.946800e-01	k: 1263082	n:1270000
KS ci ratio: 1.753073e+00	ci left: 8.581624e-07	ci right 8.064223e-06	k: 4	n:1270000
C9orf150   1270000 perm   754 sec   (1683 perm/sec)   p_kst 3.149606e-06   p_cons 9.945528e-01   p_joint 1.338583e-05

Joint ci ratio: 9.799935e-01	ci left: 6.558910e-06	ci right 1.932822e-05	k: 15	n:1280000
Cons ci ratio: 2.561910e-04	ci left: 9.944344e-01	ci right 9.946899e-01	k: 1273041	n:1280000
KS ci ratio: 1.753073e+00	ci left: 8.514580e-07	ci right 8.001222e-06	k: 4	n:1280000
C9orf150   1280000 perm   765 sec   (1673 perm/sec)   p_kst 3.125000e-06   p_cons 9.945633e-01   p_joint 1.171875e-05

Joint ci ratio: 1.131601e+00	ci left: 4.256721e-06	ci right 1.525734e-05	k: 11	n:1290000
Cons ci ratio: 2.549879e-04	ci left: 9.944438e-01	ci right 9.946982e-01	k: 1282998	n:1290000
KS ci ratio: 1.753073e+00	ci left: 8.448575e-07	ci right 7.939197e-06	k: 4	n:1290000
C9orf150   1290000 perm   775 sec   (1664 perm/sec)   p_kst 3.100775e-06   p_cons 9.945721e-01   p_joint 8.527132e-06

Joint ci ratio: 1.087207e+00	ci left: 4.769682e-06	ci right 1.612424e-05	k: 12	n:1300000
Cons ci ratio: 2.542172e-04	ci left: 9.944352e-01	ci right 9.946888e-01	k: 1292932	n:1300000
KS ci ratio: 1.753073e+00	ci left: 8.383586e-07	ci right 7.878126e-06	k: 4	n:1300000
C9orf150   1300000 perm   786 sec   (1654 perm/sec)   p_kst 3.076923e-06   p_cons 9.945631e-01   p_joint 9.230769e-06

Joint ci ratio: 1.087207e+00	ci left: 4.733272e-06	ci right 1.600116e-05	k: 12	n:1310000
Cons ci ratio: 2.532204e-04	ci left: 9.944367e-01	ci right 9.946893e-01	k: 1302879	n:1310000
KS ci ratio: 1.753073e+00	ci left: 8.319589e-07	ci right 7.817988e-06	k: 4	n:1310000
C9orf150   1310000 perm   796 sec   (1645 perm/sec)   p_kst 3.053435e-06   p_cons 9.945641e-01   p_joint 9.160305e-06

Joint ci ratio: 1.087207e+00	ci left: 4.697414e-06	ci right 1.587993e-05	k: 12	n:1320000
Cons ci ratio: 2.522706e-04	ci left: 9.944367e-01	ci right 9.946884e-01	k: 1312824	n:1320000
KS ci ratio: 1.753073e+00	ci left: 8.256562e-07	ci right 7.758761e-06	k: 4	n:1320000
C9orf150   1320000 perm   807 sec   (1636 perm/sec)   p_kst 3.030303e-06   p_cons 9.945636e-01   p_joint 9.090909e-06

Joint ci ratio: 1.087207e+00	ci left: 4.662095e-06	ci right 1.576054e-05	k: 12	n:1330000
Cons ci ratio: 2.512965e-04	ci left: 9.944382e-01	ci right 9.946889e-01	k: 1322771	n:1330000
KS ci ratio: 1.753073e+00	ci left: 8.194482e-07	ci right 7.700425e-06	k: 4	n:1330000
C9orf150   1330000 perm   818 sec   (1627 perm/sec)   p_kst 3.007519e-06   p_cons 9.945647e-01   p_joint 9.022556e-06

Joint ci ratio: 1.087207e+00	ci left: 4.627303e-06	ci right 1.564292e-05	k: 12	n:1340000
Cons ci ratio: 2.503163e-04	ci left: 9.944405e-01	ci right 9.946902e-01	k: 1332719	n:1340000
KS ci ratio: 1.753073e+00	ci left: 8.133329e-07	ci right 7.642959e-06	k: 4	n:1340000
C9orf150   1340000 perm   828 sec   (1617 perm/sec)   p_kst 2.985075e-06   p_cons 9.945664e-01   p_joint 8.955224e-06

Joint ci ratio: 1.087207e+00	ci left: 4.593027e-06	ci right 1.552705e-05	k: 12	n:1350000
Cons ci ratio: 2.494841e-04	ci left: 9.944367e-01	ci right 9.946856e-01	k: 1342659	n:1350000
KS ci ratio: 1.753073e+00	ci left: 8.073083e-07	ci right 7.586344e-06	k: 4	n:1350000
C9orf150   1350000 perm   840 sec   (1608 perm/sec)   p_kst 2.962963e-06   p_cons 9.945622e-01   p_joint 8.888889e-06

Joint ci ratio: 1.087207e+00	ci left: 4.559254e-06	ci right 1.541288e-05	k: 12	n:1360000
Cons ci ratio: 2.485080e-04	ci left: 9.944397e-01	ci right 9.946876e-01	k: 1352608	n:1360000
KS ci ratio: 1.753073e+00	ci left: 8.013722e-07	ci right 7.530563e-06	k: 4	n:1360000
C9orf150   1360000 perm   851 sec   (1599 perm/sec)   p_kst 2.941176e-06   p_cons 9.945647e-01   p_joint 8.823529e-06

Joint ci ratio: 1.087207e+00	ci left: 4.525975e-06	ci right 1.530038e-05	k: 12	n:1370000
Cons ci ratio: 2.475432e-04	ci left: 9.944426e-01	ci right 9.946896e-01	k: 1362557	n:1370000
KS ci ratio: 1.753073e+00	ci left: 7.955227e-07	ci right 7.475595e-06	k: 4	n:1370000
C9orf150   1370000 perm   861 sec   (1590 perm/sec)   p_kst 2.919708e-06   p_cons 9.945672e-01   p_joint 8.759124e-06

Joint ci ratio: 1.047658e+00	ci left: 5.015917e-06	ci right 1.610893e-05	k: 13	n:1380000
Cons ci ratio: 2.465399e-04	ci left: 9.944477e-01	ci right 9.946937e-01	k: 1372509	n:1380000
KS ci ratio: 1.600329e+00	ci left: 1.176440e-06	ci right 8.455293e-06	k: 5	n:1380000
C9orf150   1380000 perm   872 sec   (1582 perm/sec)   p_kst 3.623188e-06   p_cons 9.945717e-01   p_joint 9.420290e-06

Joint ci ratio: 1.047658e+00	ci left: 4.979831e-06	ci right 1.599304e-05	k: 13	n:1390000
Cons ci ratio: 2.456794e-04	ci left: 9.944469e-01	ci right 9.946920e-01	k: 1382453	n:1390000
KS ci ratio: 1.600329e+00	ci left: 1.167977e-06	ci right 8.394463e-06	k: 5	n:1390000
C9orf150   1390000 perm   883 sec   (1574 perm/sec)   p_kst 3.597122e-06   p_cons 9.945705e-01   p_joint 9.352518e-06

Joint ci ratio: 1.047658e+00	ci left: 4.944261e-06	ci right 1.587880e-05	k: 13	n:1400000
Cons ci ratio: 2.448441e-04	ci left: 9.944454e-01	ci right 9.946897e-01	k: 1392396	n:1400000
KS ci ratio: 1.600329e+00	ci left: 1.159634e-06	ci right 8.334503e-06	k: 5	n:1400000
C9orf150   1400000 perm   895 sec   (1565 perm/sec)   p_kst 3.571429e-06   p_cons 9.945686e-01   p_joint 9.285714e-06

Joint ci ratio: 1.047658e+00	ci left: 4.909195e-06	ci right 1.576619e-05	k: 13	n:1410000
Cons ci ratio: 2.439532e-04	ci left: 9.944468e-01	ci right 9.946901e-01	k: 1402343	n:1410000
KS ci ratio: 1.600329e+00	ci left: 1.151410e-06	ci right 8.275393e-06	k: 5	n:1410000
C9orf150   1410000 perm   906 sec   (1557 perm/sec)   p_kst 3.546099e-06   p_cons 9.945695e-01   p_joint 9.219858e-06

Joint ci ratio: 1.047659e+00	ci left: 4.874623e-06	ci right 1.565516e-05	k: 13	n:1420000
Cons ci ratio: 2.430243e-04	ci left: 9.944503e-01	ci right 9.946927e-01	k: 1412293	n:1420000
KS ci ratio: 1.600329e+00	ci left: 1.143301e-06	ci right 8.217116e-06	k: 5	n:1420000
C9orf150   1420000 perm   917 sec   (1548 perm/sec)   p_kst 3.521127e-06   p_cons 9.945725e-01   p_joint 9.154930e-06

Joint ci ratio: 1.047659e+00	ci left: 4.840535e-06	ci right 1.554568e-05	k: 13	n:1430000
Cons ci ratio: 2.424195e-04	ci left: 9.944396e-01	ci right 9.946814e-01	k: 1422223	n:1430000
KS ci ratio: 1.600329e+00	ci left: 1.135306e-06	ci right 8.159654e-06	k: 5	n:1430000
C9orf150   1430000 perm   929 sec   (1540 perm/sec)   p_kst 3.496503e-06   p_cons 9.945615e-01   p_joint 9.090909e-06

Joint ci ratio: 1.047659e+00	ci left: 4.806920e-06	ci right 1.543773e-05	k: 13	n:1440000
Cons ci ratio: 2.416478e-04	ci left: 9.944368e-01	ci right 9.946778e-01	k: 1432164	n:1440000
KS ci ratio: 1.600329e+00	ci left: 1.127422e-06	ci right 8.102990e-06	k: 5	n:1440000
C9orf150   1440000 perm   940 sec   (1531 perm/sec)   p_kst 3.472222e-06   p_cons 9.945583e-01   p_joint 9.027778e-06

Joint ci ratio: 1.047659e+00	ci left: 4.773769e-06	ci right 1.533126e-05	k: 13	n:1450000
Cons ci ratio: 2.408679e-04	ci left: 9.944348e-01	ci right 9.946750e-01	k: 1442106	n:1450000
KS ci ratio: 1.600329e+00	ci left: 1.119647e-06	ci right 8.047107e-06	k: 5	n:1450000
C9orf150   1450000 perm   952 sec   (1524 perm/sec)   p_kst 3.448276e-06   p_cons 9.945559e-01   p_joint 8.965517e-06

Joint ci ratio: 1.012134e+00	ci left: 5.242428e-06	ci right 1.608873e-05	k: 14	n:1460000
Cons ci ratio: 2.398526e-04	ci left: 9.944438e-01	ci right 9.946830e-01	k: 1452064	n:1460000
KS ci ratio: 1.600329e+00	ci left: 1.111978e-06	ci right 7.991990e-06	k: 5	n:1460000
C9orf150   1460000 perm   963 sec   (1515 perm/sec)   p_kst 3.424658e-06   p_cons 9.945644e-01   p_joint 9.589041e-06

Joint ci ratio: 1.012134e+00	ci left: 5.206765e-06	ci right 1.597928e-05	k: 14	n:1470000
Cons ci ratio: 2.389848e-04	ci left: 9.944465e-01	ci right 9.946849e-01	k: 1462013	n:1470000
KS ci ratio: 1.600329e+00	ci left: 1.104413e-06	ci right 7.937623e-06	k: 5	n:1470000
C9orf150   1470000 perm   975 sec   (1507 perm/sec)   p_kst 3.401361e-06   p_cons 9.945667e-01   p_joint 9.523810e-06

Joint ci ratio: 1.012134e+00	ci left: 5.171584e-06	ci right 1.587131e-05	k: 14	n:1480000
Cons ci ratio: 2.380518e-04	ci left: 9.944526e-01	ci right 9.946900e-01	k: 1471967	n:1480000
KS ci ratio: 1.600330e+00	ci left: 1.096951e-06	ci right 7.883990e-06	k: 5	n:1480000
C9orf150   1480000 perm   987 sec   (1500 perm/sec)   p_kst 3.378378e-06   p_cons 9.945723e-01   p_joint 9.459459e-06

Joint ci ratio: 1.012134e+00	ci left: 5.136875e-06	ci right 1.576480e-05	k: 14	n:1490000
Cons ci ratio: 2.371147e-04	ci left: 9.944593e-01	ci right 9.946958e-01	k: 1481922	n:1490000
KS ci ratio: 1.600330e+00	ci left: 1.089589e-06	ci right 7.831078e-06	k: 5	n:1490000
C9orf150   1490000 perm   998 sec   (1492 perm/sec)   p_kst 3.355705e-06   p_cons 9.945785e-01   p_joint 9.395973e-06

Joint ci ratio: 1.012134e+00	ci left: 5.102629e-06	ci right 1.565970e-05	k: 14	n:1500000
Cons ci ratio: 2.362613e-04	ci left: 9.944626e-01	ci right 9.946982e-01	k: 1491872	n:1500000
KS ci ratio: 1.600330e+00	ci left: 1.082325e-06	ci right 7.778871e-06	k: 5	n:1500000
C9orf150   1500000 perm   1011 sec   (1484 perm/sec)   p_kst 3.333333e-06   p_cons 9.945813e-01   p_joint 9.333333e-06

Joint ci ratio: 1.012134e+00	ci left: 5.068837e-06	ci right 1.555599e-05	k: 14	n:1510000
Cons ci ratio: 2.355183e-04	ci left: 9.944611e-01	ci right 9.946960e-01	k: 1501815	n:1510000
KS ci ratio: 1.600330e+00	ci left: 1.075157e-06	ci right 7.727355e-06	k: 5	n:1510000
C9orf150   1510000 perm   1022 sec   (1477 perm/sec)   p_kst 3.311258e-06   p_cons 9.945795e-01   p_joint 9.271523e-06

Joint ci ratio: 1.012134e+00	ci left: 5.035489e-06	ci right 1.545365e-05	k: 14	n:1520000
Cons ci ratio: 2.347536e-04	ci left: 9.944609e-01	ci right 9.946951e-01	k: 1511760	n:1520000
KS ci ratio: 1.600330e+00	ci left: 1.068084e-06	ci right 7.676517e-06	k: 5	n:1520000
C9orf150   1520000 perm   1034 sec   (1469 perm/sec)   p_kst 3.289474e-06   p_cons 9.945789e-01   p_joint 9.210526e-06

Joint ci ratio: 1.012134e+00	ci left: 5.002578e-06	ci right 1.535265e-05	k: 14	n:1530000
Cons ci ratio: 2.337693e-04	ci left: 9.944714e-01	ci right 9.947045e-01	k: 1521721	n:1530000
KS ci ratio: 1.600330e+00	ci left: 1.061103e-06	ci right 7.626344e-06	k: 5	n:1530000
C9orf150   1530000 perm   1047 sec   (1462 perm/sec)   p_kst 3.267974e-06   p_cons 9.945889e-01   p_joint 9.150327e-06

Joint ci ratio: 1.012134e+00	ci left: 4.970093e-06	ci right 1.525295e-05	k: 14	n:1540000
Cons ci ratio: 2.329652e-04	ci left: 9.944738e-01	ci right 9.947061e-01	k: 1531670	n:1540000
KS ci ratio: 1.600330e+00	ci left: 1.054213e-06	ci right 7.576823e-06	k: 5	n:1540000
C9orf150   1540000 perm   1059 sec   (1454 perm/sec)   p_kst 3.246753e-06   p_cons 9.945909e-01   p_joint 9.090909e-06

Joint ci ratio: 1.012134e+00	ci left: 4.938028e-06	ci right 1.515455e-05	k: 14	n:1550000
Cons ci ratio: 2.322529e-04	ci left: 9.944723e-01	ci right 9.947039e-01	k: 1541613	n:1550000
KS ci ratio: 1.600330e+00	ci left: 1.047411e-06	ci right 7.527940e-06	k: 5	n:1550000
C9orf150   1550000 perm   1071 sec   (1447 perm/sec)   p_kst 3.225806e-06   p_cons 9.945890e-01   p_joint 9.032258e-06

Joint ci ratio: 1.012134e+00	ci left: 4.906374e-06	ci right 1.505740e-05	k: 14	n:1560000
Cons ci ratio: 2.315884e-04	ci left: 9.944689e-01	ci right 9.946998e-01	k: 1551553	n:1560000
KS ci ratio: 1.600330e+00	ci left: 1.040697e-06	ci right 7.479684e-06	k: 5	n:1560000
C9orf150   1560000 perm   1084 sec   (1439 perm/sec)   p_kst 3.205128e-06   p_cons 9.945853e-01   p_joint 8.974359e-06

Joint ci ratio: 1.012134e+00	ci left: 4.875123e-06	ci right 1.496150e-05	k: 14	n:1570000
Cons ci ratio: 2.309431e-04	ci left: 9.944648e-01	ci right 9.946951e-01	k: 1561492	n:1570000
KS ci ratio: 1.600330e+00	ci left: 1.034069e-06	ci right 7.432043e-06	k: 5	n:1570000
C9orf150   1570000 perm   1096 sec   (1432 perm/sec)   p_kst 3.184713e-06   p_cons 9.945809e-01   p_joint 8.917197e-06

Joint ci ratio: 1.012135e+00	ci left: 4.844268e-06	ci right 1.486680e-05	k: 14	n:1580000
Cons ci ratio: 2.303301e-04	ci left: 9.944596e-01	ci right 9.946893e-01	k: 1571429	n:1580000
KS ci ratio: 1.600330e+00	ci left: 1.027524e-06	ci right 7.385005e-06	k: 5	n:1580000
C9orf150   1580000 perm   1109 sec   (1425 perm/sec)   p_kst 3.164557e-06   p_cons 9.945753e-01   p_joint 8.860759e-06

Joint ci ratio: 1.012135e+00	ci left: 4.813801e-06	ci right 1.477330e-05	k: 14	n:1590000
Cons ci ratio: 2.296548e-04	ci left: 9.944575e-01	ci right 9.946866e-01	k: 1581371	n:1590000
KS ci ratio: 1.600330e+00	ci left: 1.021061e-06	ci right 7.338558e-06	k: 5	n:1590000
C9orf150   1590000 perm   1122 sec   (1417 perm/sec)   p_kst 3.144654e-06   p_cons 9.945730e-01   p_joint 8.805031e-06

Joint ci ratio: 1.012135e+00	ci left: 4.783714e-06	ci right 1.468097e-05	k: 14	n:1600000
Cons ci ratio: 2.291178e-04	ci left: 9.944492e-01	ci right 9.946777e-01	k: 1591303	n:1600000
KS ci ratio: 1.600330e+00	ci left: 1.014680e-06	ci right 7.292692e-06	k: 5	n:1600000
C9orf150   1600000 perm   1135 sec   (1410 perm/sec)   p_kst 3.125000e-06   p_cons 9.945644e-01   p_joint 8.750000e-06

Joint ci ratio: 1.012135e+00	ci left: 4.754002e-06	ci right 1.458978e-05	k: 14	n:1610000
Cons ci ratio: 2.286102e-04	ci left: 9.944398e-01	ci right 9.946678e-01	k: 1601233	n:1610000
KS ci ratio: 1.600330e+00	ci left: 1.008377e-06	ci right 7.247396e-06	k: 5	n:1610000
C9orf150   1610000 perm   1147 sec   (1403 perm/sec)   p_kst 3.105590e-06   p_cons 9.945547e-01   p_joint 8.695652e-06

Joint ci ratio: 1.012135e+00	ci left: 4.724656e-06	ci right 1.449972e-05	k: 14	n:1620000
Cons ci ratio: 2.278975e-04	ci left: 9.944404e-01	ci right 9.946677e-01	k: 1611179	n:1620000
KS ci ratio: 1.600330e+00	ci left: 1.002153e-06	ci right 7.202659e-06	k: 5	n:1620000
C9orf150   1620000 perm   1160 sec   (1396 perm/sec)   p_kst 3.086420e-06   p_cons 9.945549e-01   p_joint 8.641975e-06

Joint ci ratio: 1.012135e+00	ci left: 4.695670e-06	ci right 1.441077e-05	k: 14	n:1630000
Cons ci ratio: 2.271400e-04	ci left: 9.944435e-01	ci right 9.946700e-01	k: 1621129	n:1630000
KS ci ratio: 1.600330e+00	ci left: 9.960046e-07	ci right 7.158471e-06	k: 5	n:1630000
C9orf150   1630000 perm   1173 sec   (1389 perm/sec)   p_kst 3.067485e-06   p_cons 9.945577e-01   p_joint 8.588957e-06

Joint ci ratio: 1.012135e+00	ci left: 4.667038e-06	ci right 1.432290e-05	k: 14	n:1640000
Cons ci ratio: 2.264283e-04	ci left: 9.944448e-01	ci right 9.946706e-01	k: 1631076	n:1640000
KS ci ratio: 1.600330e+00	ci left: 9.899314e-07	ci right 7.114822e-06	k: 5	n:1640000
C9orf150   1640000 perm   1186 sec   (1383 perm/sec)   p_kst 3.048780e-06   p_cons 9.945585e-01   p_joint 8.536585e-06

Joint ci ratio: 1.012135e+00	ci left: 4.638753e-06	ci right 1.423609e-05	k: 14	n:1650000
Cons ci ratio: 2.257737e-04	ci left: 9.944435e-01	ci right 9.946687e-01	k: 1641019	n:1650000
KS ci ratio: 1.600330e+00	ci left: 9.839319e-07	ci right 7.071702e-06	k: 5	n:1650000
C9orf150   1650000 perm   1199 sec   (1376 perm/sec)   p_kst 3.030303e-06   p_cons 9.945570e-01   p_joint 8.484848e-06

Joint ci ratio: 1.012135e+00	ci left: 4.610809e-06	ci right 1.415033e-05	k: 14	n:1660000
Cons ci ratio: 2.251122e-04	ci left: 9.944429e-01	ci right 9.946674e-01	k: 1650963	n:1660000
KS ci ratio: 1.600330e+00	ci left: 9.780045e-07	ci right 7.029102e-06	k: 5	n:1660000
C9orf150   1660000 perm   1212 sec   (1369 perm/sec)   p_kst 3.012048e-06   p_cons 9.945560e-01   p_joint 8.433735e-06

Joint ci ratio: 1.012135e+00	ci left: 4.583199e-06	ci right 1.406560e-05	k: 14	n:1670000
Cons ci ratio: 2.243944e-04	ci left: 9.944453e-01	ci right 9.946691e-01	k: 1660912	n:1670000
KS ci ratio: 1.600330e+00	ci left: 9.721482e-07	ci right 6.987011e-06	k: 5	n:1670000
C9orf150   1670000 perm   1226 sec   (1363 perm/sec)   p_kst 2.994012e-06   p_cons 9.945581e-01   p_joint 8.383234e-06

Joint ci ratio: 1.012135e+00	ci left: 4.555918e-06	ci right 1.398188e-05	k: 14	n:1680000
Cons ci ratio: 2.237450e-04	ci left: 9.944447e-01	ci right 9.946678e-01	k: 1670856	n:1680000
KS ci ratio: 1.600330e+00	ci left: 9.663616e-07	ci right 6.945422e-06	k: 5	n:1680000
C9orf150   1680000 perm   1239 sec   (1356 perm/sec)   p_kst 2.976190e-06   p_cons 9.945571e-01   p_joint 8.333333e-06

Joint ci ratio: 1.012135e+00	ci left: 4.528960e-06	ci right 1.389915e-05	k: 14	n:1690000
Cons ci ratio: 2.230889e-04	ci left: 9.944447e-01	ci right 9.946672e-01	k: 1680801	n:1690000
KS ci ratio: 1.600330e+00	ci left: 9.606435e-07	ci right 6.904325e-06	k: 5	n:1690000
C9orf150   1690000 perm   1252 sec   (1350 perm/sec)   p_kst 2.958580e-06   p_cons 9.945568e-01   p_joint 8.284024e-06

Joint ci ratio: 1.012135e+00	ci left: 4.502319e-06	ci right 1.381739e-05	k: 14	n:1700000
Cons ci ratio: 2.224869e-04	ci left: 9.944423e-01	ci right 9.946642e-01	k: 1690742	n:1700000
KS ci ratio: 1.600330e+00	ci left: 9.549927e-07	ci right 6.863711e-06	k: 5	n:1700000
C9orf150   1700000 perm   1266 sec   (1343 perm/sec)   p_kst 2.941176e-06   p_cons 9.945541e-01   p_joint 8.235294e-06

Joint ci ratio: 1.012135e+00	ci left: 4.475990e-06	ci right 1.373658e-05	k: 14	n:1710000
Cons ci ratio: 2.218538e-04	ci left: 9.944418e-01	ci right 9.946630e-01	k: 1700686	n:1710000
KS ci ratio: 1.600330e+00	ci left: 9.494079e-07	ci right 6.823573e-06	k: 5	n:1710000
C9orf150   1710000 perm   1279 sec   (1337 perm/sec)   p_kst 2.923977e-06   p_cons 9.945532e-01   p_joint 8.187135e-06

Joint ci ratio: 1.012135e+00	ci left: 4.449966e-06	ci right 1.365672e-05	k: 14	n:1720000
Cons ci ratio: 2.210836e-04	ci left: 9.944482e-01	ci right 9.946687e-01	k: 1710642	n:1720000
KS ci ratio: 1.600330e+00	ci left: 9.438881e-07	ci right 6.783901e-06	k: 5	n:1720000
C9orf150   1720000 perm   1293 sec   (1330 perm/sec)   p_kst 2.906977e-06   p_cons 9.945593e-01   p_joint 8.139535e-06

Joint ci ratio: 1.012135e+00	ci left: 4.424244e-06	ci right 1.357778e-05	k: 14	n:1730000
Cons ci ratio: 2.206036e-04	ci left: 9.944406e-01	ci right 9.946606e-01	k: 1720574	n:1730000
KS ci ratio: 1.600330e+00	ci left: 9.384321e-07	ci right 6.744688e-06	k: 5	n:1730000
C9orf150   1730000 perm   1306 sec   (1324 perm/sec)   p_kst 2.890173e-06   p_cons 9.945514e-01   p_joint 8.092486e-06

Joint ci ratio: 1.012135e+00	ci left: 4.398817e-06	ci right 1.349975e-05	k: 14	n:1740000
Cons ci ratio: 2.200680e-04	ci left: 9.944360e-01	ci right 9.946554e-01	k: 1730511	n:1740000
KS ci ratio: 1.600330e+00	ci left: 9.330388e-07	ci right 6.705925e-06	k: 5	n:1740000
C9orf150   1740000 perm   1320 sec   (1319 perm/sec)   p_kst 2.873563e-06   p_cons 9.945466e-01   p_joint 8.045977e-06

Joint ci ratio: 1.012135e+00	ci left: 4.373681e-06	ci right 1.342260e-05	k: 14	n:1750000
Cons ci ratio: 2.193974e-04	ci left: 9.944384e-01	ci right 9.946571e-01	k: 1740460	n:1750000
KS ci ratio: 1.600330e+00	ci left: 9.277071e-07	ci right 6.667606e-06	k: 5	n:1750000
C9orf150   1750000 perm   1333 sec   (1312 perm/sec)   p_kst 2.857143e-06   p_cons 9.945486e-01   p_joint 8.000000e-06

Joint ci ratio: 1.012135e+00	ci left: 4.348831e-06	ci right 1.334634e-05	k: 14	n:1760000
Cons ci ratio: 2.188016e-04	ci left: 9.944373e-01	ci right 9.946554e-01	k: 1750403	n:1760000
KS ci ratio: 1.600330e+00	ci left: 9.224361e-07	ci right 6.629722e-06	k: 5	n:1760000
C9orf150   1760000 perm   1347 sec   (1306 perm/sec)   p_kst 2.840909e-06   p_cons 9.945472e-01   p_joint 7.954545e-06

Joint ci ratio: 1.012135e+00	ci left: 4.324261e-06	ci right 1.327094e-05	k: 14	n:1770000
Cons ci ratio: 2.181312e-04	ci left: 9.944402e-01	ci right 9.946577e-01	k: 1760353	n:1770000
KS ci ratio: 1.600330e+00	ci left: 9.172246e-07	ci right 6.592266e-06	k: 5	n:1770000
C9orf150   1770000 perm   1361 sec   (1300 perm/sec)   p_kst 2.824859e-06   p_cons 9.945497e-01   p_joint 7.909605e-06

Joint ci ratio: 1.012135e+00	ci left: 4.299967e-06	ci right 1.319638e-05	k: 14	n:1780000
Cons ci ratio: 2.176358e-04	ci left: 9.944345e-01	ci right 9.946515e-01	k: 1770288	n:1780000
KS ci ratio: 1.600330e+00	ci left: 9.120716e-07	ci right 6.555230e-06	k: 5	n:1780000
C9orf150   1780000 perm   1375 sec   (1294 perm/sec)   p_kst 2.808989e-06   p_cons 9.945438e-01   p_joint 7.865169e-06

Joint ci ratio: 1.012135e+00	ci left: 4.275945e-06	ci right 1.312266e-05	k: 14	n:1790000
Cons ci ratio: 2.169648e-04	ci left: 9.944380e-01	ci right 9.946543e-01	k: 1780239	n:1790000
KS ci ratio: 1.600330e+00	ci left: 9.069762e-07	ci right 6.518609e-06	k: 5	n:1790000
C9orf150   1790000 perm   1389 sec   (1288 perm/sec)   p_kst 2.793296e-06   p_cons 9.945469e-01   p_joint 7.821229e-06

Joint ci ratio: 1.012135e+00	ci left: 4.252190e-06	ci right 1.304976e-05	k: 14	n:1800000
Cons ci ratio: 2.164994e-04	ci left: 9.944313e-01	ci right 9.946471e-01	k: 1790172	n:1800000
KS ci ratio: 1.600330e+00	ci left: 9.019375e-07	ci right 6.482395e-06	k: 5	n:1800000
C9orf150   1800000 perm   1403 sec   (1283 perm/sec)   p_kst 2.777778e-06   p_cons 9.945400e-01   p_joint 7.777778e-06

Joint ci ratio: 1.012135e+00	ci left: 4.228697e-06	ci right 1.297766e-05	k: 14	n:1810000
Cons ci ratio: 2.159268e-04	ci left: 9.944302e-01	ci right 9.946455e-01	k: 1800115	n:1810000
KS ci ratio: 1.600330e+00	ci left: 8.969544e-07	ci right 6.446580e-06	k: 5	n:1810000
C9orf150   1810000 perm   1418 sec   (1277 perm/sec)   p_kst 2.762431e-06   p_cons 9.945387e-01   p_joint 7.734807e-06

Joint ci ratio: 1.012135e+00	ci left: 4.205462e-06	ci right 1.290635e-05	k: 14	n:1820000
Cons ci ratio: 2.152607e-04	ci left: 9.944342e-01	ci right 9.946488e-01	k: 1810067	n:1820000
KS ci ratio: 1.600330e+00	ci left: 8.920261e-07	ci right 6.411160e-06	k: 5	n:1820000
C9orf150   1820000 perm   1432 sec   (1271 perm/sec)   p_kst 2.747253e-06   p_cons 9.945423e-01   p_joint 7.692308e-06

Joint ci ratio: 1.012135e+00	ci left: 4.182482e-06	ci right 1.283583e-05	k: 14	n:1830000
Cons ci ratio: 2.146870e-04	ci left: 9.944337e-01	ci right 9.946478e-01	k: 1820011	n:1830000
KS ci ratio: 1.600330e+00	ci left: 8.871516e-07	ci right 6.376126e-06	k: 5	n:1830000
C9orf150   1830000 perm   1446 sec   (1265 perm/sec)   p_kst 2.732240e-06   p_cons 9.945415e-01   p_joint 7.650273e-06

Joint ci ratio: 1.012135e+00	ci left: 4.159751e-06	ci right 1.276607e-05	k: 14	n:1840000
Cons ci ratio: 2.140644e-04	ci left: 9.944360e-01	ci right 9.946494e-01	k: 1829960	n:1840000
KS ci ratio: 1.600330e+00	ci left: 8.823301e-07	ci right 6.341473e-06	k: 5	n:1840000
C9orf150   1840000 perm   1461 sec   (1260 perm/sec)   p_kst 2.717391e-06   p_cons 9.945435e-01   p_joint 7.608696e-06

Joint ci ratio: 1.012135e+00	ci left: 4.137266e-06	ci right 1.269706e-05	k: 14	n:1850000
Cons ci ratio: 2.134045e-04	ci left: 9.944404e-01	ci right 9.946532e-01	k: 1839913	n:1850000
KS ci ratio: 1.600330e+00	ci left: 8.775608e-07	ci right 6.307195e-06	k: 5	n:1850000
C9orf150   1850000 perm   1475 sec   (1254 perm/sec)   p_kst 2.702703e-06   p_cons 9.945476e-01   p_joint 7.567568e-06

Joint ci ratio: 6.929585e-01	ci left: 1.132422e-05	ci right 2.365692e-05	k: 31	n:1860000
Cons ci ratio: 2.129089e-04	ci left: 9.944366e-01	ci right 9.946489e-01	k: 1849851	n:1860000
KS ci ratio: 1.481618e+00	ci left: 1.183815e-06	ci right 7.021209e-06	k: 6	n:1860000
C9orf150   1860000 perm   1490 sec   (1248 perm/sec)   p_kst 3.225806e-06   p_cons 9.945435e-01   p_joint 1.666667e-05

Joint ci ratio: 6.929585e-01	ci left: 1.126366e-05	ci right 2.353041e-05	k: 31	n:1870000
Cons ci ratio: 2.123224e-04	ci left: 9.944378e-01	ci right 9.946495e-01	k: 1859798	n:1870000
KS ci ratio: 1.481618e+00	ci left: 1.177484e-06	ci right 6.983663e-06	k: 6	n:1870000
C9orf150   1870000 perm   1505 sec   (1243 perm/sec)   p_kst 3.208556e-06   p_cons 9.945444e-01   p_joint 1.657754e-05

Joint ci ratio: 6.929586e-01	ci left: 1.120375e-05	ci right 2.340525e-05	k: 31	n:1880000
Cons ci ratio: 2.117927e-04	ci left: 9.944362e-01	ci right 9.946474e-01	k: 1869740	n:1880000
KS ci ratio: 1.481618e+00	ci left: 1.171221e-06	ci right 6.946516e-06	k: 6	n:1880000
C9orf150   1880000 perm   1519 sec   (1237 perm/sec)   p_kst 3.191489e-06   p_cons 9.945426e-01   p_joint 1.648936e-05

Joint ci ratio: 6.929586e-01	ci left: 1.114447e-05	ci right 2.328141e-05	k: 31	n:1890000
Cons ci ratio: 2.111433e-04	ci left: 9.944411e-01	ci right 9.946516e-01	k: 1879694	n:1890000
KS ci ratio: 1.481618e+00	ci left: 1.165024e-06	ci right 6.909762e-06	k: 6	n:1890000
C9orf150   1890000 perm   1534 sec   (1232 perm/sec)   p_kst 3.174603e-06   p_cons 9.945471e-01   p_joint 1.640212e-05

Joint ci ratio: 6.929586e-01	ci left: 1.108581e-05	ci right 2.315888e-05	k: 31	n:1900000
Cons ci ratio: 2.105304e-04	ci left: 9.944443e-01	ci right 9.946542e-01	k: 1889645	n:1900000
KS ci ratio: 1.481618e+00	ci left: 1.158893e-06	ci right 6.873395e-06	k: 6	n:1900000
C9orf150   1900000 perm   1549 sec   (1226 perm/sec)   p_kst 3.157895e-06   p_cons 9.945500e-01   p_joint 1.631579e-05

Joint ci ratio: 6.929587e-01	ci left: 1.102777e-05	ci right 2.303763e-05	k: 31	n:1910000
Cons ci ratio: 2.099227e-04	ci left: 9.944475e-01	ci right 9.946568e-01	k: 1899596	n:1910000
KS ci ratio: 1.481618e+00	ci left: 1.152825e-06	ci right 6.837408e-06	k: 6	n:1910000
C9orf150   1910000 perm   1564 sec   (1221 perm/sec)   p_kst 3.141361e-06   p_cons 9.945529e-01   p_joint 1.623037e-05

Joint ci ratio: 6.929587e-01	ci left: 1.097034e-05	ci right 2.291764e-05	k: 31	n:1920000
Cons ci ratio: 2.094107e-04	ci left: 9.944459e-01	ci right 9.946547e-01	k: 1909538	n:1920000
KS ci ratio: 1.481618e+00	ci left: 1.146821e-06	ci right 6.801797e-06	k: 6	n:1920000
C9orf150   1920000 perm   1579 sec   (1216 perm/sec)   p_kst 3.125000e-06   p_cons 9.945510e-01   p_joint 1.614583e-05

Joint ci ratio: 8.357418e-01	ci left: 6.735417e-06	ci right 1.663246e-05	k: 21	n:1930000
Cons ci ratio: 2.088226e-04	ci left: 9.944485e-01	ci right 9.946567e-01	k: 1919488	n:1930000
KS ci ratio: 1.481618e+00	ci left: 1.140879e-06	ci right 6.766554e-06	k: 6	n:1930000
C9orf150   1930000 perm   1594 sec   (1211 perm/sec)   p_kst 3.108808e-06   p_cons 9.945534e-01   p_joint 1.088083e-05

Joint ci ratio: 9.799957e-01	ci left: 4.327525e-06	ci right 1.275266e-05	k: 15	n:1940000
Cons ci ratio: 2.081899e-04	ci left: 9.944537e-01	ci right 9.946613e-01	k: 1929443	n:1940000
KS ci ratio: 1.481618e+00	ci left: 1.134998e-06	ci right 6.731675e-06	k: 6	n:1940000
C9orf150   1940000 perm   1609 sec   (1205 perm/sec)   p_kst 3.092784e-06   p_cons 9.945582e-01   p_joint 7.731959e-06

Joint ci ratio: 9.799957e-01	ci left: 4.305332e-06	ci right 1.268726e-05	k: 15	n:1950000
Cons ci ratio: 2.077496e-04	ci left: 9.944490e-01	ci right 9.946562e-01	k: 1939379	n:1950000
KS ci ratio: 1.481618e+00	ci left: 1.129177e-06	ci right 6.697154e-06	k: 6	n:1950000
C9orf150   1950000 perm   1625 sec   (1200 perm/sec)   p_kst 3.076923e-06   p_cons 9.945533e-01   p_joint 7.692308e-06

Joint ci ratio: 9.799957e-01	ci left: 4.283366e-06	ci right 1.262253e-05	k: 15	n:1960000
Cons ci ratio: 2.072533e-04	ci left: 9.944475e-01	ci right 9.946541e-01	k: 1949321	n:1960000
KS ci ratio: 1.481618e+00	ci left: 1.123416e-06	ci right 6.662985e-06	k: 6	n:1960000
C9orf150   1960000 perm   1640 sec   (1195 perm/sec)   p_kst 3.061224e-06   p_cons 9.945515e-01   p_joint 7.653061e-06

Joint ci ratio: 9.799958e-01	ci left: 4.261623e-06	ci right 1.255846e-05	k: 15	n:1970000
Cons ci ratio: 2.068187e-04	ci left: 9.944429e-01	ci right 9.946491e-01	k: 1959257	n:1970000
KS ci ratio: 1.481618e+00	ci left: 1.117714e-06	ci right 6.629163e-06	k: 6	n:1970000
C9orf150   1970000 perm   1656 sec   (1190 perm/sec)   p_kst 3.045685e-06   p_cons 9.945467e-01   p_joint 7.614213e-06

Joint ci ratio: 9.799958e-01	ci left: 4.240100e-06	ci right 1.249503e-05	k: 15	n:1980000
Cons ci ratio: 2.064250e-04	ci left: 9.944363e-01	ci right 9.946421e-01	k: 1969189	n:1980000
KS ci ratio: 1.481618e+00	ci left: 1.112069e-06	ci right 6.595682e-06	k: 6	n:1980000
C9orf150   1980000 perm   1671 sec   (1185 perm/sec)   p_kst 3.030303e-06   p_cons 9.945399e-01   p_joint 7.575758e-06

Joint ci ratio: 9.799958e-01	ci left: 4.218793e-06	ci right 1.243224e-05	k: 15	n:1990000
Cons ci ratio: 2.059095e-04	ci left: 9.944363e-01	ci right 9.946416e-01	k: 1979134	n:1990000
KS ci ratio: 1.481618e+00	ci left: 1.106480e-06	ci right 6.562538e-06	k: 6	n:1990000
C9orf150   1990000 perm   1687 sec   (1180 perm/sec)   p_kst 3.015075e-06   p_cons 9.945397e-01   p_joint 7.537688e-06

Joint ci ratio: 9.799958e-01	ci left: 4.197699e-06	ci right 1.237008e-05	k: 15	n:2000000
Cons ci ratio: 2.053316e-04	ci left: 9.944399e-01	ci right 9.946446e-01	k: 1989086	n:2000000
KS ci ratio: 1.481618e+00	ci left: 1.100948e-06	ci right 6.529725e-06	k: 6	n:2000000
C9orf150   2000000 perm   1702 sec   (1175 perm/sec)   p_kst 3.000000e-06   p_cons 9.945430e-01   p_joint 7.500000e-06

Joint ci ratio: 9.507354e-01	ci left: 4.549948e-06	ci right 1.292683e-05	k: 16	n:2010000
Cons ci ratio: 2.048711e-04	ci left: 9.944375e-01	ci right 9.946417e-01	k: 1999026	n:2010000
KS ci ratio: 1.481618e+00	ci left: 1.095471e-06	ci right 6.497239e-06	k: 6	n:2010000
C9orf150   2010000 perm   1718 sec   (1170 perm/sec)   p_kst 2.985075e-06   p_cons 9.945403e-01   p_joint 7.960199e-06

Joint ci ratio: 9.507354e-01	ci left: 4.527424e-06	ci right 1.286284e-05	k: 16	n:2020000
Cons ci ratio: 2.043577e-04	ci left: 9.944380e-01	ci right 9.946417e-01	k: 2008972	n:2020000
KS ci ratio: 1.481618e+00	ci left: 1.090047e-06	ci right 6.465075e-06	k: 6	n:2020000
C9orf150   2020000 perm   1733 sec   (1166 perm/sec)   p_kst 2.970297e-06   p_cons 9.945406e-01   p_joint 7.920792e-06

Joint ci ratio: 9.507354e-01	ci left: 4.505121e-06	ci right 1.279947e-05	k: 16	n:2030000
Cons ci ratio: 2.038297e-04	ci left: 9.944396e-01	ci right 9.946428e-01	k: 2018920	n:2030000
KS ci ratio: 1.481618e+00	ci left: 1.084678e-06	ci right 6.433227e-06	k: 6	n:2030000
C9orf150   2030000 perm   1749 sec   (1161 perm/sec)   p_kst 2.955665e-06   p_cons 9.945419e-01   p_joint 7.881773e-06

Joint ci ratio: 9.507355e-01	ci left: 4.483037e-06	ci right 1.273673e-05	k: 16	n:2040000
Cons ci ratio: 2.034526e-04	ci left: 9.944332e-01	ci right 9.946360e-01	k: 2028852	n:2040000
KS ci ratio: 1.481618e+00	ci left: 1.079361e-06	ci right 6.401692e-06	k: 6	n:2040000
C9orf150   2040000 perm   1765 sec   (1156 perm/sec)   p_kst 2.941176e-06   p_cons 9.945353e-01   p_joint 7.843137e-06

Joint ci ratio: 9.239486e-01	ci left: 4.830801e-06	ci right 1.327736e-05	k: 17	n:2050000
Cons ci ratio: 2.028770e-04	ci left: 9.944377e-01	ci right 9.946399e-01	k: 2038806	n:2050000
KS ci ratio: 1.481618e+00	ci left: 1.074095e-06	ci right 6.370464e-06	k: 6	n:2050000
C9orf150   2050000 perm   1781 sec   (1151 perm/sec)   p_kst 2.926829e-06   p_cons 9.945395e-01   p_joint 8.292683e-06

Joint ci ratio: 9.239486e-01	ci left: 4.807350e-06	ci right 1.321290e-05	k: 17	n:2060000
Cons ci ratio: 2.022789e-04	ci left: 9.944436e-01	ci right 9.946453e-01	k: 2048763	n:2060000
KS ci ratio: 1.481618e+00	ci left: 1.068881e-06	ci right 6.339540e-06	k: 6	n:2060000
C9orf150   2060000 perm   1797 sec   (1146 perm/sec)   p_kst 2.912621e-06   p_cons 9.945451e-01   p_joint 8.252427e-06

Joint ci ratio: 9.239486e-01	ci left: 4.784126e-06	ci right 1.314907e-05	k: 17	n:2070000
Cons ci ratio: 2.017668e-04	ci left: 9.944451e-01	ci right 9.946463e-01	k: 2058711	n:2070000
KS ci ratio: 1.481618e+00	ci left: 1.063718e-06	ci right 6.308914e-06	k: 6	n:2070000
C9orf150   2070000 perm   1813 sec   (1142 perm/sec)   p_kst 2.898551e-06   p_cons 9.945464e-01   p_joint 8.212560e-06

Joint ci ratio: 9.239486e-01	ci left: 4.761125e-06	ci right 1.308586e-05	k: 17	n:2080000
Cons ci ratio: 2.012942e-04	ci left: 9.944446e-01	ci right 9.946453e-01	k: 2068655	n:2080000
KS ci ratio: 1.481618e+00	ci left: 1.058604e-06	ci right 6.278583e-06	k: 6	n:2080000
C9orf150   2080000 perm   1829 sec   (1137 perm/sec)   p_kst 2.884615e-06   p_cons 9.945457e-01   p_joint 8.173077e-06

Joint ci ratio: 9.239487e-01	ci left: 4.738345e-06	ci right 1.302324e-05	k: 17	n:2090000
Cons ci ratio: 2.007895e-04	ci left: 9.944461e-01	ci right 9.946463e-01	k: 2078603	n:2090000
KS ci ratio: 1.481618e+00	ci left: 1.053539e-06	ci right 6.248542e-06	k: 6	n:2090000
C9orf150   2090000 perm   1845 sec   (1133 perm/sec)   p_kst 2.870813e-06   p_cons 9.945469e-01   p_joint 8.133971e-06

Joint ci ratio: 9.239487e-01	ci left: 4.715781e-06	ci right 1.296123e-05	k: 17	n:2100000
Cons ci ratio: 2.002974e-04	ci left: 9.944471e-01	ci right 9.946468e-01	k: 2088550	n:2100000
KS ci ratio: 1.481618e+00	ci left: 1.048522e-06	ci right 6.218787e-06	k: 6	n:2100000
C9orf150   2100000 perm   1862 sec   (1128 perm/sec)   p_kst 2.857143e-06   p_cons 9.945476e-01   p_joint 8.095238e-06

Joint ci ratio: 9.799961e-01	ci left: 3.978861e-06	ci right 1.172520e-05	k: 15	n:2110000
Cons ci ratio: 1.998525e-04	ci left: 9.944457e-01	ci right 9.946449e-01	k: 2098492	n:2110000
KS ci ratio: 1.481618e+00	ci left: 1.043552e-06	ci right 6.189314e-06	k: 6	n:2110000
C9orf150   2110000 perm   1878 sec   (1123 perm/sec)   p_kst 2.843602e-06   p_cons 9.945460e-01   p_joint 7.109005e-06

Joint ci ratio: 9.507356e-01	ci left: 4.313866e-06	ci right 1.225610e-05	k: 16	n:2120000
Cons ci ratio: 1.993412e-04	ci left: 9.944481e-01	ci right 9.946468e-01	k: 2108442	n:2120000
KS ci ratio: 1.481618e+00	ci left: 1.038630e-06	ci right 6.160119e-06	k: 6	n:2120000
C9orf150   2120000 perm   1895 sec   (1119 perm/sec)   p_kst 2.830189e-06   p_cons 9.945481e-01   p_joint 7.547170e-06

Joint ci ratio: 9.507356e-01	ci left: 4.293613e-06	ci right 1.219856e-05	k: 16	n:2130000
Cons ci ratio: 1.988424e-04	ci left: 9.944500e-01	ci right 9.946482e-01	k: 2118391	n:2130000
KS ci ratio: 1.481618e+00	ci left: 1.033754e-06	ci right 6.131198e-06	k: 6	n:2130000
C9orf150   2130000 perm   1911 sec   (1114 perm/sec)   p_kst 2.816901e-06   p_cons 9.945498e-01   p_joint 7.511737e-06

Joint ci ratio: 9.507357e-01	ci left: 4.273549e-06	ci right 1.214156e-05	k: 16	n:2140000
Cons ci ratio: 1.983814e-04	ci left: 9.944500e-01	ci right 9.946477e-01	k: 2128336	n:2140000
KS ci ratio: 1.481618e+00	ci left: 1.028923e-06	ci right 6.102548e-06	k: 6	n:2140000
C9orf150   2140000 perm   1928 sec   (1110 perm/sec)   p_kst 2.803738e-06   p_cons 9.945495e-01   p_joint 7.476636e-06

Joint ci ratio: 9.507357e-01	ci left: 4.253672e-06	ci right 1.208509e-05	k: 16	n:2150000
Cons ci ratio: 1.979237e-04	ci left: 9.944500e-01	ci right 9.946473e-01	k: 2138281	n:2150000
KS ci ratio: 1.481618e+00	ci left: 1.024138e-06	ci right 6.074164e-06	k: 6	n:2150000
C9orf150   2150000 perm   1945 sec   (1105 perm/sec)   p_kst 2.790698e-06   p_cons 9.945493e-01   p_joint 7.441860e-06

Joint ci ratio: 9.507357e-01	ci left: 4.233979e-06	ci right 1.202914e-05	k: 16	n:2160000
Cons ci ratio: 1.974186e-04	ci left: 9.944528e-01	ci right 9.946496e-01	k: 2148232	n:2160000
KS ci ratio: 1.481618e+00	ci left: 1.019396e-06	ci right 6.046043e-06	k: 6	n:2160000
C9orf150   2160000 perm   1962 sec   (1101 perm/sec)   p_kst 2.777778e-06   p_cons 9.945519e-01   p_joint 7.407407e-06

Joint ci ratio: 9.239488e-01	ci left: 4.563659e-06	ci right 1.254313e-05	k: 17	n:2170000
Cons ci ratio: 1.969675e-04	ci left: 9.944528e-01	ci right 9.946491e-01	k: 2158177	n:2170000
KS ci ratio: 1.481618e+00	ci left: 1.014698e-06	ci right 6.018181e-06	k: 6	n:2170000
C9orf150   2170000 perm   1979 sec   (1097 perm/sec)   p_kst 2.764977e-06   p_cons 9.945516e-01   p_joint 7.834101e-06

Joint ci ratio: 9.239488e-01	ci left: 4.542725e-06	ci right 1.248559e-05	k: 17	n:2180000
Cons ci ratio: 1.965444e-04	ci left: 9.944514e-01	ci right 9.946473e-01	k: 2168119	n:2180000
KS ci ratio: 1.481618e+00	ci left: 1.010044e-06	ci right 5.990575e-06	k: 6	n:2180000
C9orf150   2180000 perm   1996 sec   (1092 perm/sec)   p_kst 2.752294e-06   p_cons 9.945500e-01   p_joint 7.798165e-06

Joint ci ratio: 9.239489e-01	ci left: 4.521982e-06	ci right 1.242858e-05	k: 17	n:2190000
Cons ci ratio: 1.960745e-04	ci left: 9.944528e-01	ci right 9.946482e-01	k: 2178067	n:2190000
KS ci ratio: 1.481618e+00	ci left: 1.005432e-06	ci right 5.963221e-06	k: 6	n:2190000
C9orf150   2190000 perm   2013 sec   (1088 perm/sec)   p_kst 2.739726e-06   p_cons 9.945511e-01   p_joint 7.762557e-06

Joint ci ratio: 9.239489e-01	ci left: 4.501427e-06	ci right 1.237208e-05	k: 17	n:2200000
Cons ci ratio: 1.956407e-04	ci left: 9.944523e-01	ci right 9.946473e-01	k: 2188011	n:2200000
KS ci ratio: 1.481618e+00	ci left: 1.000862e-06	ci right 5.936115e-06	k: 6	n:2200000
C9orf150   2200000 perm   2030 sec   (1084 perm/sec)   p_kst 2.727273e-06   p_cons 9.945505e-01   p_joint 7.727273e-06

Joint ci ratio: 9.239489e-01	ci left: 4.481059e-06	ci right 1.231610e-05	k: 17	n:2210000
Cons ci ratio: 1.952342e-04	ci left: 9.944505e-01	ci right 9.946451e-01	k: 2197952	n:2210000
KS ci ratio: 1.481618e+00	ci left: 9.963329e-07	ci right 5.909255e-06	k: 6	n:2210000
C9orf150   2210000 perm   2047 sec   (1080 perm/sec)   p_kst 2.714932e-06   p_cons 9.945484e-01   p_joint 7.692308e-06

Joint ci ratio: 9.239489e-01	ci left: 4.460874e-06	ci right 1.226062e-05	k: 17	n:2220000
Cons ci ratio: 1.947817e-04	ci left: 9.944514e-01	ci right 9.946455e-01	k: 2207899	n:2220000
KS ci ratio: 1.481618e+00	ci left: 9.918449e-07	ci right 5.882637e-06	k: 6	n:2220000
C9orf150   2220000 perm   2064 sec   (1076 perm/sec)   p_kst 2.702703e-06   p_cons 9.945491e-01   p_joint 7.657658e-06

Joint ci ratio: 8.993056e-01	ci left: 4.783837e-06	ci right 1.275681e-05	k: 18	n:2230000
Cons ci ratio: 1.942760e-04	ci left: 9.944554e-01	ci right 9.946491e-01	k: 2217853	n:2230000
KS ci ratio: 1.481618e+00	ci left: 9.873971e-07	ci right 5.856257e-06	k: 6	n:2230000
C9orf150   2230000 perm   2081 sec   (1071 perm/sec)   p_kst 2.690583e-06   p_cons 9.945529e-01   p_joint 8.071749e-06

Joint ci ratio: 8.993057e-01	ci left: 4.762480e-06	ci right 1.269986e-05	k: 18	n:2240000
Cons ci ratio: 1.939100e-04	ci left: 9.944518e-01	ci right 9.946451e-01	k: 2227790	n:2240000
KS ci ratio: 1.481618e+00	ci left: 9.829891e-07	ci right 5.830113e-06	k: 6	n:2240000
C9orf150   2240000 perm   2099 sec   (1067 perm/sec)   p_kst 2.678571e-06   p_cons 9.945491e-01   p_joint 8.035714e-06

Joint ci ratio: 8.993057e-01	ci left: 4.741314e-06	ci right 1.264342e-05	k: 18	n:2250000
Cons ci ratio: 1.935062e-04	ci left: 9.944505e-01	ci right 9.946434e-01	k: 2237732	n:2250000
KS ci ratio: 1.481618e+00	ci left: 9.786203e-07	ci right 5.804202e-06	k: 6	n:2250000
C9orf150   2250000 perm   2116 sec   (1063 perm/sec)   p_kst 2.666667e-06   p_cons 9.945476e-01   p_joint 8.000000e-06

Joint ci ratio: 8.993057e-01	ci left: 4.720334e-06	ci right 1.258748e-05	k: 18	n:2260000
Cons ci ratio: 1.931129e-04	ci left: 9.944487e-01	ci right 9.946412e-01	k: 2247673	n:2260000
KS ci ratio: 1.481618e+00	ci left: 9.742901e-07	ci right 5.778519e-06	k: 6	n:2260000
C9orf150   2260000 perm   2133 sec   (1059 perm/sec)   p_kst 2.654867e-06   p_cons 9.945456e-01   p_joint 7.964602e-06

Joint ci ratio: 8.993057e-01	ci left: 4.699540e-06	ci right 1.253202e-05	k: 18	n:2270000
Cons ci ratio: 1.927140e-04	ci left: 9.944474e-01	ci right 9.946395e-01	k: 2257615	n:2270000
KS ci ratio: 1.481618e+00	ci left: 9.699981e-07	ci right 5.753063e-06	k: 6	n:2270000
C9orf150   2270000 perm   2151 sec   (1055 perm/sec)   p_kst 2.643172e-06   p_cons 9.945441e-01   p_joint 7.929515e-06

Joint ci ratio: 8.993057e-01	ci left: 4.678928e-06	ci right 1.247706e-05	k: 18	n:2280000
Cons ci ratio: 1.922788e-04	ci left: 9.944483e-01	ci right 9.946399e-01	k: 2267562	n:2280000
KS ci ratio: 1.481618e+00	ci left: 9.657437e-07	ci right 5.727831e-06	k: 6	n:2280000
C9orf150   2280000 perm   2168 sec   (1051 perm/sec)   p_kst 2.631579e-06   p_cons 9.945447e-01   p_joint 7.894737e-06

Joint ci ratio: 8.993057e-01	ci left: 4.658496e-06	ci right 1.242257e-05	k: 18	n:2290000
Cons ci ratio: 1.918465e-04	ci left: 9.944492e-01	ci right 9.946404e-01	k: 2277509	n:2290000
KS ci ratio: 1.481618e+00	ci left: 9.615265e-07	ci right 5.702818e-06	k: 6	n:2290000
C9orf150   2290000 perm   2186 sec   (1048 perm/sec)   p_kst 2.620087e-06   p_cons 9.945454e-01   p_joint 7.860262e-06

Joint ci ratio: 8.993058e-01	ci left: 4.638242e-06	ci right 1.236856e-05	k: 18	n:2300000
Cons ci ratio: 1.914171e-04	ci left: 9.944501e-01	ci right 9.946409e-01	k: 2287456	n:2300000
KS ci ratio: 1.481618e+00	ci left: 9.573459e-07	ci right 5.678023e-06	k: 6	n:2300000
C9orf150   2300000 perm   2204 sec   (1044 perm/sec)   p_kst 2.608696e-06   p_cons 9.945461e-01   p_joint 7.826087e-06

Joint ci ratio: 8.993058e-01	ci left: 4.618163e-06	ci right 1.231502e-05	k: 18	n:2310000
Cons ci ratio: 1.909448e-04	ci left: 9.944536e-01	ci right 9.946439e-01	k: 2297409	n:2310000
KS ci ratio: 1.481618e+00	ci left: 9.532016e-07	ci right 5.653443e-06	k: 6	n:2310000
C9orf150   2310000 perm   2222 sec   (1040 perm/sec)   p_kst 2.597403e-06   p_cons 9.945494e-01   p_joint 7.792208e-06

Joint ci ratio: 8.993058e-01	ci left: 4.598257e-06	ci right 1.226194e-05	k: 18	n:2320000
Cons ci ratio: 1.905744e-04	ci left: 9.944514e-01	ci right 9.946413e-01	k: 2307349	n:2320000
KS ci ratio: 1.481618e+00	ci left: 9.490929e-07	ci right 5.629075e-06	k: 6	n:2320000
C9orf150   2320000 perm   2240 sec   (1036 perm/sec)   p_kst 2.586207e-06   p_cons 9.945470e-01   p_joint 7.758621e-06

Joint ci ratio: 8.993058e-01	ci left: 4.578522e-06	ci right 1.220931e-05	k: 18	n:2330000
Cons ci ratio: 1.901159e-04	ci left: 9.944544e-01	ci right 9.946439e-01	k: 2317301	n:2330000
KS ci ratio: 1.481618e+00	ci left: 9.450196e-07	ci right 5.604916e-06	k: 6	n:2330000
C9orf150   2330000 perm   2258 sec   (1032 perm/sec)   p_kst 2.575107e-06   p_cons 9.945498e-01   p_joint 7.725322e-06

Joint ci ratio: 8.993058e-01	ci left: 4.558955e-06	ci right 1.215714e-05	k: 18	n:2340000
Cons ci ratio: 1.896680e-04	ci left: 9.944570e-01	ci right 9.946461e-01	k: 2327252	n:2340000
KS ci ratio: 1.481618e+00	ci left: 9.409810e-07	ci right 5.580963e-06	k: 6	n:2340000
C9orf150   2340000 perm   2276 sec   (1028 perm/sec)   p_kst 2.564103e-06   p_cons 9.945521e-01   p_joint 7.692308e-06

Joint ci ratio: 8.993058e-01	ci left: 4.539555e-06	ci right 1.210540e-05	k: 18	n:2350000
Cons ci ratio: 1.891861e-04	ci left: 9.944617e-01	ci right 9.946503e-01	k: 2337208	n:2350000
KS ci ratio: 1.481618e+00	ci left: 9.369768e-07	ci right 5.557215e-06	k: 6	n:2350000
C9orf150   2350000 perm   2294 sec   (1024 perm/sec)   p_kst 2.553191e-06   p_cons 9.945566e-01   p_joint 7.659574e-06

Joint ci ratio: 8.993059e-01	ci left: 4.520320e-06	ci right 1.205411e-05	k: 18	n:2360000
Cons ci ratio: 1.887151e-04	ci left: 9.944659e-01	ci right 9.946540e-01	k: 2347163	n:2360000
KS ci ratio: 1.481618e+00	ci left: 9.330066e-07	ci right 5.533667e-06	k: 6	n:2360000
C9orf150   2360000 perm   2312 sec   (1021 perm/sec)   p_kst 2.542373e-06   p_cons 9.945606e-01   p_joint 7.627119e-06

Joint ci ratio: 8.993059e-01	ci left: 4.501247e-06	ci right 1.200325e-05	k: 18	n:2370000
Cons ci ratio: 1.883137e-04	ci left: 9.944663e-01	ci right 9.946540e-01	k: 2357109	n:2370000
KS ci ratio: 1.481618e+00	ci left: 9.290699e-07	ci right 5.510318e-06	k: 6	n:2370000
C9orf150   2370000 perm   2330 sec   (1017 perm/sec)   p_kst 2.531646e-06   p_cons 9.945608e-01   p_joint 7.594937e-06

Joint ci ratio: 8.993059e-01	ci left: 4.482334e-06	ci right 1.195281e-05	k: 18	n:2380000
Cons ci ratio: 1.879439e-04	ci left: 9.944650e-01	ci right 9.946523e-01	k: 2367051	n:2380000
KS ci ratio: 1.481618e+00	ci left: 9.251662e-07	ci right 5.487166e-06	k: 6	n:2380000
C9orf150   2380000 perm   2349 sec   (1013 perm/sec)   p_kst 2.521008e-06   p_cons 9.945592e-01   p_joint 7.563025e-06

Joint ci ratio: 8.993059e-01	ci left: 4.463579e-06	ci right 1.190280e-05	k: 18	n:2390000
Cons ci ratio: 1.875401e-04	ci left: 9.944658e-01	ci right 9.946527e-01	k: 2376998	n:2390000
KS ci ratio: 1.481618e+00	ci left: 9.212952e-07	ci right 5.464207e-06	k: 6	n:2390000
C9orf150   2390000 perm   2367 sec   (1010 perm/sec)   p_kst 2.510460e-06   p_cons 9.945598e-01   p_joint 7.531381e-06

Joint ci ratio: 8.993059e-01	ci left: 4.444981e-06	ci right 1.185321e-05	k: 18	n:2400000
Cons ci ratio: 1.871749e-04	ci left: 9.944645e-01	ci right 9.946510e-01	k: 2386940	n:2400000
KS ci ratio: 1.481618e+00	ci left: 9.174565e-07	ci right 5.441440e-06	k: 6	n:2400000
C9orf150   2400000 perm   2385 sec   (1006 perm/sec)   p_kst 2.500000e-06   p_cons 9.945583e-01   p_joint 7.500000e-06

Joint ci ratio: 8.993059e-01	ci left: 4.426537e-06	ci right 1.180402e-05	k: 18	n:2410000
Cons ci ratio: 1.868619e-04	ci left: 9.944602e-01	ci right 9.946465e-01	k: 2396875	n:2410000
KS ci ratio: 1.481618e+00	ci left: 9.136496e-07	ci right 5.418861e-06	k: 6	n:2410000
C9orf150   2410000 perm   2404 sec   (1003 perm/sec)   p_kst 2.489627e-06   p_cons 9.945539e-01   p_joint 7.468880e-06

Joint ci ratio: 8.993060e-01	ci left: 4.408246e-06	ci right 1.175525e-05	k: 18	n:2420000
Cons ci ratio: 1.865290e-04	ci left: 9.944573e-01	ci right 9.946432e-01	k: 2406813	n:2420000
KS ci ratio: 1.481618e+00	ci left: 9.098742e-07	ci right 5.396469e-06	k: 6	n:2420000
C9orf150   2420000 perm   2422 sec   (999 perm/sec)   p_kst 2.479339e-06   p_cons 9.945508e-01   p_joint 7.438017e-06

Joint ci ratio: 8.993060e-01	ci left: 4.390105e-06	ci right 1.170687e-05	k: 18	n:2430000
Cons ci ratio: 1.861130e-04	ci left: 9.944593e-01	ci right 9.946448e-01	k: 2416763	n:2430000
KS ci ratio: 1.481618e+00	ci left: 9.061298e-07	ci right 5.374261e-06	k: 6	n:2430000
C9orf150   2430000 perm   2441 sec   (996 perm/sec)   p_kst 2.469136e-06   p_cons 9.945527e-01   p_joint 7.407407e-06

Joint ci ratio: 8.993060e-01	ci left: 4.372113e-06	ci right 1.165889e-05	k: 18	n:2440000
Cons ci ratio: 1.856576e-04	ci left: 9.944639e-01	ci right 9.946489e-01	k: 2426719	n:2440000
KS ci ratio: 1.481618e+00	ci left: 9.024162e-07	ci right 5.352236e-06	k: 6	n:2440000
C9orf150   2440000 perm   2460 sec   (992 perm/sec)   p_kst 2.459016e-06   p_cons 9.945570e-01   p_joint 7.377049e-06

Joint ci ratio: 8.993060e-01	ci left: 4.354267e-06	ci right 1.161131e-05	k: 18	n:2450000
Cons ci ratio: 1.852264e-04	ci left: 9.944671e-01	ci right 9.946517e-01	k: 2436672	n:2450000
KS ci ratio: 1.481618e+00	ci left: 8.987329e-07	ci right 5.330390e-06	k: 6	n:2450000
C9orf150   2450000 perm   2479 sec   (988 perm/sec)   p_kst 2.448980e-06   p_cons 9.945600e-01   p_joint 7.346939e-06

Joint ci ratio: 8.993060e-01	ci left: 4.336567e-06	ci right 1.156411e-05	k: 18	n:2460000
Cons ci ratio: 1.848953e-04	ci left: 9.944646e-01	ci right 9.946489e-01	k: 2446611	n:2460000
KS ci ratio: 1.481618e+00	ci left: 8.950795e-07	ci right 5.308722e-06	k: 6	n:2460000
C9orf150   2460000 perm   2497 sec   (985 perm/sec)   p_kst 2.439024e-06   p_cons 9.945573e-01   p_joint 7.317073e-06

Joint ci ratio: 8.993060e-01	ci left: 4.319010e-06	ci right 1.151729e-05	k: 18	n:2470000
Cons ci ratio: 1.845660e-04	ci left: 9.944621e-01	ci right 9.946461e-01	k: 2456550	n:2470000
KS ci ratio: 1.481618e+00	ci left: 8.914557e-07	ci right 5.287229e-06	k: 6	n:2470000
C9orf150   2470000 perm   2516 sec   (982 perm/sec)   p_kst 2.429150e-06   p_cons 9.945547e-01   p_joint 7.287449e-06

Joint ci ratio: 8.993061e-01	ci left: 4.301595e-06	ci right 1.147085e-05	k: 18	n:2480000
Cons ci ratio: 1.841149e-04	ci left: 9.944669e-01	ci right 9.946504e-01	k: 2466507	n:2480000
KS ci ratio: 1.481618e+00	ci left: 8.878611e-07	ci right 5.265909e-06	k: 6	n:2480000
C9orf150   2480000 perm   2535 sec   (978 perm/sec)   p_kst 2.419355e-06   p_cons 9.945593e-01   p_joint 7.258065e-06

Joint ci ratio: 8.993061e-01	ci left: 4.284319e-06	ci right 1.142478e-05	k: 18	n:2490000
Cons ci ratio: 1.836943e-04	ci left: 9.944701e-01	ci right 9.946532e-01	k: 2476460	n:2490000
KS ci ratio: 1.481618e+00	ci left: 8.842954e-07	ci right 5.244761e-06	k: 6	n:2490000
C9orf150   2490000 perm   2555 sec   (975 perm/sec)   p_kst 2.409639e-06   p_cons 9.945622e-01   p_joint 7.228916e-06

Joint ci ratio: 8.993061e-01	ci left: 4.267182e-06	ci right 1.137908e-05	k: 18	n:2500000
Cons ci ratio: 1.833308e-04	ci left: 9.944701e-01	ci right 9.946528e-01	k: 2486405	n:2500000
KS ci ratio: 1.481618e+00	ci left: 8.807582e-07	ci right 5.223782e-06	k: 6	n:2500000
C9orf150   2500000 perm   2574 sec   (971 perm/sec)   p_kst 2.400000e-06   p_cons 9.945620e-01   p_joint 7.200000e-06

Joint ci ratio: 8.993061e-01	ci left: 4.250181e-06	ci right 1.133375e-05	k: 18	n:2510000
Cons ci ratio: 1.830233e-04	ci left: 9.944668e-01	ci right 9.946492e-01	k: 2496342	n:2510000
KS ci ratio: 1.481618e+00	ci left: 8.772492e-07	ci right 5.202970e-06	k: 6	n:2510000
C9orf150   2510000 perm   2593 sec   (968 perm/sec)   p_kst 2.390438e-06   p_cons 9.945586e-01   p_joint 7.171315e-06

Joint ci ratio: 8.993061e-01	ci left: 4.233315e-06	ci right 1.128877e-05	k: 18	n:2520000
Cons ci ratio: 1.826369e-04	ci left: 9.944683e-01	ci right 9.946504e-01	k: 2506291	n:2520000
KS ci ratio: 1.481618e+00	ci left: 8.737680e-07	ci right 5.182324e-06	k: 6	n:2520000
C9orf150   2520000 perm   2613 sec   (964 perm/sec)   p_kst 2.380952e-06   p_cons 9.945599e-01   p_joint 7.142857e-06

Joint ci ratio: 8.993061e-01	ci left: 4.216583e-06	ci right 1.124415e-05	k: 18	n:2530000
Cons ci ratio: 1.822995e-04	ci left: 9.944671e-01	ci right 9.946488e-01	k: 2516233	n:2530000
KS ci ratio: 1.481618e+00	ci left: 8.703144e-07	ci right 5.161840e-06	k: 6	n:2530000
C9orf150   2530000 perm   2632 sec   (961 perm/sec)   p_kst 2.371542e-06   p_cons 9.945585e-01   p_joint 7.114625e-06

Joint ci ratio: 8.993061e-01	ci left: 4.199982e-06	ci right 1.119988e-05	k: 18	n:2540000
Cons ci ratio: 1.819904e-04	ci left: 9.944643e-01	ci right 9.946456e-01	k: 2526171	n:2540000
KS ci ratio: 1.481618e+00	ci left: 8.668880e-07	ci right 5.141518e-06	k: 6	n:2540000
C9orf150   2540000 perm   2652 sec   (958 perm/sec)   p_kst 2.362205e-06   p_cons 9.945555e-01   p_joint 7.086614e-06

Joint ci ratio: 8.765350e-01	ci left: 4.485983e-06	ci right 1.163560e-05	k: 19	n:2550000
Cons ci ratio: 1.816435e-04	ci left: 9.944638e-01	ci right 9.946449e-01	k: 2536115	n:2550000
KS ci ratio: 1.385927e+00	ci left: 1.103672e-06	ci right 5.655943e-06	k: 7	n:2550000
C9orf150   2550000 perm   2671 sec   (955 perm/sec)   p_kst 2.745098e-06   p_cons 9.945549e-01   p_joint 7.450980e-06

Joint ci ratio: 8.554105e-01	ci left: 4.772084e-06	ci right 1.206575e-05	k: 20	n:2560000
Cons ci ratio: 1.812527e-04	ci left: 9.944661e-01	ci right 9.946468e-01	k: 2546066	n:2560000
KS ci ratio: 1.385927e+00	ci left: 1.099361e-06	ci right 5.633849e-06	k: 7	n:2560000
C9orf150   2560000 perm   2691 sec   (951 perm/sec)   p_kst 2.734375e-06   p_cons 9.945570e-01   p_joint 7.812500e-06

Joint ci ratio: 8.554105e-01	ci left: 4.753516e-06	ci right 1.201880e-05	k: 20	n:2570000
Cons ci ratio: 1.808319e-04	ci left: 9.944704e-01	ci right 9.946506e-01	k: 2556022	n:2570000
KS ci ratio: 1.385927e+00	ci left: 1.095084e-06	ci right 5.611928e-06	k: 7	n:2570000
C9orf150   2570000 perm   2710 sec   (948 perm/sec)   p_kst 2.723735e-06   p_cons 9.945611e-01   p_joint 7.782101e-06

Joint ci ratio: 8.357431e-01	ci left: 5.038507e-06	ci right 1.244212e-05	k: 21	n:2580000
Cons ci ratio: 1.804721e-04	ci left: 9.944711e-01	ci right 9.946510e-01	k: 2565969	n:2580000
KS ci ratio: 1.306664e+00	ci left: 1.338696e-06	ci right 6.109754e-06	k: 8	n:2580000
C9orf150   2580000 perm   2729 sec   (945 perm/sec)   p_kst 3.100775e-06   p_cons 9.945616e-01   p_joint 8.139535e-06

Joint ci ratio: 8.173727e-01	ci left: 5.323283e-06	ci right 1.286031e-05	k: 22	n:2590000
Cons ci ratio: 1.801337e-04	ci left: 9.944707e-01	ci right 9.946502e-01	k: 2575913	n:2590000
KS ci ratio: 1.239610e+00	ci left: 1.588948e-06	ci right 6.596439e-06	k: 9	n:2590000
C9orf150   2590000 perm   2749 sec   (942 perm/sec)   p_kst 3.474903e-06   p_cons 9.945610e-01   p_joint 8.494208e-06

Joint ci ratio: 8.173727e-01	ci left: 5.302808e-06	ci right 1.281084e-05	k: 22	n:2600000
Cons ci ratio: 1.798164e-04	ci left: 9.944691e-01	ci right 9.946483e-01	k: 2585854	n:2600000
KS ci ratio: 1.239610e+00	ci left: 1.582837e-06	ci right 6.571068e-06	k: 9	n:2600000
C9orf150   2600000 perm   2769 sec   (939 perm/sec)   p_kst 3.461538e-06   p_cons 9.945592e-01   p_joint 8.461538e-06

Joint ci ratio: 8.173727e-01	ci left: 5.282491e-06	ci right 1.276176e-05	k: 22	n:2610000
Cons ci ratio: 1.794626e-04	ci left: 9.944698e-01	ci right 9.946487e-01	k: 2595801	n:2610000
KS ci ratio: 1.239610e+00	ci left: 1.576772e-06	ci right 6.545892e-06	k: 9	n:2610000
C9orf150   2610000 perm   2789 sec   (936 perm/sec)   p_kst 3.448276e-06   p_cons 9.945598e-01   p_joint 8.429119e-06

Joint ci ratio: 8.173728e-01	ci left: 5.262329e-06	ci right 1.271305e-05	k: 22	n:2620000
Cons ci ratio: 1.792120e-04	ci left: 9.944643e-01	ci right 9.946430e-01	k: 2605732	n:2620000
KS ci ratio: 1.239610e+00	ci left: 1.570754e-06	ci right 6.520907e-06	k: 9	n:2620000
C9orf150   2620000 perm   2809 sec   (933 perm/sec)   p_kst 3.435115e-06   p_cons 9.945542e-01   p_joint 8.396947e-06

Joint ci ratio: 8.173728e-01	ci left: 5.242320e-06	ci right 1.266471e-05	k: 22	n:2630000
Cons ci ratio: 1.788617e-04	ci left: 9.944651e-01	ci right 9.946433e-01	k: 2615679	n:2630000
KS ci ratio: 1.239610e+00	ci left: 1.564782e-06	ci right 6.496113e-06	k: 9	n:2630000
C9orf150   2630000 perm   2829 sec   (930 perm/sec)   p_kst 3.422053e-06   p_cons 9.945548e-01   p_joint 8.365019e-06

Joint ci ratio: 8.001629e-01	ci left: 5.522745e-06	ci right 1.307243e-05	k: 23	n:2640000
Cons ci ratio: 1.784949e-04	ci left: 9.944669e-01	ci right 9.946448e-01	k: 2625629	n:2640000
KS ci ratio: 1.181922e+00	ci left: 1.816437e-06	ci right 6.966033e-06	k: 10	n:2640000
C9orf150   2640000 perm   2850 sec   (926 perm/sec)   p_kst 3.787879e-06   p_cons 9.945564e-01   p_joint 8.712121e-06

Joint ci ratio: 8.001629e-01	ci left: 5.501905e-06	ci right 1.302310e-05	k: 23	n:2650000
Cons ci ratio: 1.781612e-04	ci left: 9.944669e-01	ci right 9.946445e-01	k: 2635574	n:2650000
KS ci ratio: 1.181922e+00	ci left: 1.809582e-06	ci right 6.939746e-06	k: 10	n:2650000
C9orf150   2650000 perm   2870 sec   (923 perm/sec)   p_kst 3.773585e-06   p_cons 9.945562e-01   p_joint 8.679245e-06

Joint ci ratio: 8.001629e-01	ci left: 5.481221e-06	ci right 1.297414e-05	k: 23	n:2660000
Cons ci ratio: 1.778418e-04	ci left: 9.944661e-01	ci right 9.946433e-01	k: 2645517	n:2660000
KS ci ratio: 1.181922e+00	ci left: 1.802779e-06	ci right 6.913657e-06	k: 10	n:2660000
C9orf150   2660000 perm   2890 sec   (920 perm/sec)   p_kst 3.759398e-06   p_cons 9.945553e-01   p_joint 8.646617e-06

Joint ci ratio: 8.001629e-01	ci left: 5.460692e-06	ci right 1.292555e-05	k: 23	n:2670000
Cons ci ratio: 1.775364e-04	ci left: 9.944646e-01	ci right 9.946415e-01	k: 2655458	n:2670000
KS ci ratio: 1.181922e+00	ci left: 1.796027e-06	ci right 6.887763e-06	k: 10	n:2670000
C9orf150   2670000 perm   2911 sec   (917 perm/sec)   p_kst 3.745318e-06   p_cons 9.945536e-01   p_joint 8.614232e-06

Joint ci ratio: 8.001629e-01	ci left: 5.440316e-06	ci right 1.287732e-05	k: 23	n:2680000
Cons ci ratio: 1.771776e-04	ci left: 9.944664e-01	ci right 9.946430e-01	k: 2665408	n:2680000
KS ci ratio: 1.181922e+00	ci left: 1.789326e-06	ci right 6.862062e-06	k: 10	n:2680000
C9orf150   2680000 perm   2931 sec   (914 perm/sec)   p_kst 3.731343e-06   p_cons 9.945552e-01   p_joint 8.582090e-06

Joint ci ratio: 8.001629e-01	ci left: 5.420092e-06	ci right 1.282945e-05	k: 23	n:2690000
Cons ci ratio: 1.767663e-04	ci left: 9.944716e-01	ci right 9.946478e-01	k: 2675367	n:2690000
KS ci ratio: 1.181922e+00	ci left: 1.782674e-06	ci right 6.836553e-06	k: 10	n:2690000
C9orf150   2690000 perm   2951 sec   (912 perm/sec)   p_kst 3.717472e-06   p_cons 9.945602e-01   p_joint 8.550186e-06

Joint ci ratio: 7.839962e-01	ci left: 5.695287e-06	ci right 1.322593e-05	k: 24	n:2700000
Cons ci ratio: 1.764423e-04	ci left: 9.944715e-01	ci right 9.946474e-01	k: 2685312	n:2700000
KS ci ratio: 1.131604e+00	ci left: 2.033765e-06	ci right 7.289632e-06	k: 11	n:2700000
C9orf150   2700000 perm   2972 sec   (909 perm/sec)   p_kst 4.074074e-06   p_cons 9.945600e-01   p_joint 8.888889e-06

Joint ci ratio: 7.839962e-01	ci left: 5.674271e-06	ci right 1.317713e-05	k: 24	n:2710000
Cons ci ratio: 1.761140e-04	ci left: 9.944719e-01	ci right 9.946474e-01	k: 2695258	n:2710000
KS ci ratio: 1.131604e+00	ci left: 2.026260e-06	ci right 7.262733e-06	k: 11	n:2710000
C9orf150   2710000 perm   2993 sec   (906 perm/sec)   p_kst 4.059041e-06   p_cons 9.945601e-01   p_joint 8.856089e-06

Joint ci ratio: 7.839963e-01	ci left: 5.653410e-06	ci right 1.312868e-05	k: 24	n:2720000
Cons ci ratio: 1.757876e-04	ci left: 9.944722e-01	ci right 9.946474e-01	k: 2705204	n:2720000
KS ci ratio: 1.131604e+00	ci left: 2.018811e-06	ci right 7.236032e-06	k: 11	n:2720000
C9orf150   2720000 perm   3013 sec   (903 perm/sec)   p_kst 4.044118e-06   p_cons 9.945603e-01   p_joint 8.823529e-06

Joint ci ratio: 7.839963e-01	ci left: 5.632701e-06	ci right 1.308059e-05	k: 24	n:2730000
Cons ci ratio: 1.755401e-04	ci left: 9.944677e-01	ci right 9.946426e-01	k: 2715137	n:2730000
KS ci ratio: 1.131604e+00	ci left: 2.011416e-06	ci right 7.209526e-06	k: 11	n:2730000
C9orf150   2730000 perm   3034 sec   (900 perm/sec)   p_kst 4.029304e-06   p_cons 9.945557e-01   p_joint 8.791209e-06

Joint ci ratio: 7.839963e-01	ci left: 5.612144e-06	ci right 1.303285e-05	k: 24	n:2740000
Cons ci ratio: 1.752169e-04	ci left: 9.944680e-01	ci right 9.946426e-01	k: 2725083	n:2740000
KS ci ratio: 1.131604e+00	ci left: 2.004075e-06	ci right 7.183214e-06	k: 11	n:2740000
C9orf150   2740000 perm   3055 sec   (897 perm/sec)   p_kst 4.014599e-06   p_cons 9.945558e-01   p_joint 8.759124e-06

Joint ci ratio: 7.839963e-01	ci left: 5.591736e-06	ci right 1.298546e-05	k: 24	n:2750000
Cons ci ratio: 1.749541e-04	ci left: 9.944647e-01	ci right 9.946390e-01	k: 2735019	n:2750000
KS ci ratio: 1.131604e+00	ci left: 1.996787e-06	ci right 7.157094e-06	k: 11	n:2750000
C9orf150   2750000 perm   3076 sec   (894 perm/sec)   p_kst 4.000000e-06   p_cons 9.945524e-01   p_joint 8.727273e-06

Joint ci ratio: 7.839963e-01	ci left: 5.571476e-06	ci right 1.293841e-05	k: 24	n:2760000
Cons ci ratio: 1.747158e-04	ci left: 9.944599e-01	ci right 9.946340e-01	k: 2744951	n:2760000
KS ci ratio: 1.131604e+00	ci left: 1.989552e-06	ci right 7.131162e-06	k: 11	n:2760000
C9orf150   2760000 perm   3097 sec   (891 perm/sec)   p_kst 3.985507e-06   p_cons 9.945475e-01   p_joint 8.695652e-06

Joint ci ratio: 7.839963e-01	ci left: 5.551362e-06	ci right 1.289170e-05	k: 24	n:2770000
Cons ci ratio: 1.743506e-04	ci left: 9.944631e-01	ci right 9.946369e-01	k: 2754905	n:2770000
KS ci ratio: 1.131604e+00	ci left: 1.982370e-06	ci right 7.105418e-06	k: 11	n:2770000
C9orf150   2770000 perm   3117 sec   (889 perm/sec)   p_kst 3.971119e-06   p_cons 9.945505e-01   p_joint 8.664260e-06

Joint ci ratio: 7.839963e-01	ci left: 5.531394e-06	ci right 1.284533e-05	k: 24	n:2780000
Cons ci ratio: 1.739877e-04	ci left: 9.944664e-01	ci right 9.946398e-01	k: 2764859	n:2780000
KS ci ratio: 1.131604e+00	ci left: 1.975239e-06	ci right 7.079859e-06	k: 11	n:2780000
C9orf150   2780000 perm   3139 sec   (886 perm/sec)   p_kst 3.956835e-06   p_cons 9.945536e-01   p_joint 8.633094e-06

Joint ci ratio: 7.839963e-01	ci left: 5.511568e-06	ci right 1.279929e-05	k: 24	n:2790000
Cons ci ratio: 1.737476e-04	ci left: 9.944620e-01	ci right 9.946352e-01	k: 2774792	n:2790000
KS ci ratio: 1.131604e+00	ci left: 1.968159e-06	ci right 7.054483e-06	k: 11	n:2790000
C9orf150   2790000 perm   3160 sec   (883 perm/sec)   p_kst 3.942652e-06   p_cons 9.945491e-01   p_joint 8.602151e-06

Joint ci ratio: 7.839964e-01	ci left: 5.491883e-06	ci right 1.275358e-05	k: 24	n:2800000
Cons ci ratio: 1.733655e-04	ci left: 9.944667e-01	ci right 9.946394e-01	k: 2784750	n:2800000
KS ci ratio: 1.131604e+00	ci left: 1.961130e-06	ci right 7.029289e-06	k: 11	n:2800000
C9orf150   2800000 perm   3181 sec   (880 perm/sec)   p_kst 3.928571e-06   p_cons 9.945536e-01   p_joint 8.571429e-06

Joint ci ratio: 7.839964e-01	ci left: 5.472339e-06	ci right 1.270819e-05	k: 24	n:2810000
Cons ci ratio: 1.730996e-04	ci left: 9.944641e-01	ci right 9.946366e-01	k: 2794688	n:2810000
KS ci ratio: 1.131604e+00	ci left: 1.954151e-06	ci right 7.004273e-06	k: 11	n:2810000
C9orf150   2810000 perm   3202 sec   (877 perm/sec)   p_kst 3.914591e-06   p_cons 9.945509e-01   p_joint 8.540925e-06

Joint ci ratio: 7.839964e-01	ci left: 5.452934e-06	ci right 1.266313e-05	k: 24	n:2820000
Cons ci ratio: 1.727387e-04	ci left: 9.944677e-01	ci right 9.946398e-01	k: 2804643	n:2820000
KS ci ratio: 1.131604e+00	ci left: 1.947222e-06	ci right 6.979436e-06	k: 11	n:2820000
C9orf150   2820000 perm   3224 sec   (875 perm/sec)   p_kst 3.900709e-06   p_cons 9.945543e-01   p_joint 8.510638e-06

Joint ci ratio: 7.839964e-01	ci left: 5.433666e-06	ci right 1.261838e-05	k: 24	n:2830000
Cons ci ratio: 1.723913e-04	ci left: 9.944705e-01	ci right 9.946423e-01	k: 2814596	n:2830000
KS ci ratio: 1.131604e+00	ci left: 1.940341e-06	ci right 6.954773e-06	k: 11	n:2830000
C9orf150   2830000 perm   3245 sec   (872 perm/sec)   p_kst 3.886926e-06   p_cons 9.945569e-01   p_joint 8.480565e-06

Joint ci ratio: 7.839964e-01	ci left: 5.414533e-06	ci right 1.257395e-05	k: 24	n:2840000
Cons ci ratio: 1.721131e-04	ci left: 9.944690e-01	ci right 9.946405e-01	k: 2824537	n:2840000
KS ci ratio: 1.131604e+00	ci left: 1.933509e-06	ci right 6.930285e-06	k: 11	n:2840000
C9orf150   2840000 perm   3267 sec   (869 perm/sec)   p_kst 3.873239e-06   p_cons 9.945553e-01   p_joint 8.450704e-06

Joint ci ratio: 7.839964e-01	ci left: 5.395535e-06	ci right 1.252983e-05	k: 24	n:2850000
Cons ci ratio: 1.718417e-04	ci left: 9.944672e-01	ci right 9.946385e-01	k: 2834477	n:2850000
KS ci ratio: 1.131604e+00	ci left: 1.926724e-06	ci right 6.905968e-06	k: 11	n:2850000
C9orf150   2850000 perm   3289 sec   (867 perm/sec)   p_kst 3.859649e-06   p_cons 9.945533e-01   p_joint 8.421053e-06

Joint ci ratio: 7.839964e-01	ci left: 5.376669e-06	ci right 1.248602e-05	k: 24	n:2860000
Cons ci ratio: 1.715717e-04	ci left: 9.944654e-01	ci right 9.946364e-01	k: 2844417	n:2860000
KS ci ratio: 1.131604e+00	ci left: 1.919988e-06	ci right 6.881821e-06	k: 11	n:2860000
C9orf150   2860000 perm   3310 sec   (864 perm/sec)   p_kst 3.846154e-06   p_cons 9.945514e-01   p_joint 8.391608e-06

Joint ci ratio: 7.839964e-01	ci left: 5.357935e-06	ci right 1.244252e-05	k: 24	n:2870000
Cons ci ratio: 1.713194e-04	ci left: 9.944626e-01	ci right 9.946333e-01	k: 2854354	n:2870000
KS ci ratio: 1.131604e+00	ci left: 1.913298e-06	ci right 6.857843e-06	k: 11	n:2870000
C9orf150   2870000 perm   3332 sec   (861 perm/sec)   p_kst 3.832753e-06   p_cons 9.945484e-01   p_joint 8.362369e-06

Joint ci ratio: 7.839965e-01	ci left: 5.339331e-06	ci right 1.239931e-05	k: 24	n:2880000
Cons ci ratio: 1.709367e-04	ci left: 9.944681e-01	ci right 9.946385e-01	k: 2864315	n:2880000
KS ci ratio: 1.131604e+00	ci left: 1.906654e-06	ci right 6.834031e-06	k: 11	n:2880000
C9orf150   2880000 perm   3355 sec   (859 perm/sec)   p_kst 3.819444e-06   p_cons 9.945538e-01   p_joint 8.333333e-06

Joint ci ratio: 7.839965e-01	ci left: 5.320856e-06	ci right 1.235641e-05	k: 24	n:2890000
Cons ci ratio: 1.706708e-04	ci left: 9.944664e-01	ci right 9.946364e-01	k: 2874255	n:2890000
KS ci ratio: 1.131604e+00	ci left: 1.900057e-06	ci right 6.810384e-06	k: 11	n:2890000
C9orf150   2890000 perm   3376 sec   (856 perm/sec)   p_kst 3.806228e-06   p_cons 9.945519e-01   p_joint 8.304498e-06

Joint ci ratio: 7.839965e-01	ci left: 5.302508e-06	ci right 1.231380e-05	k: 24	n:2900000
Cons ci ratio: 1.703303e-04	ci left: 9.944695e-01	ci right 9.946392e-01	k: 2884209	n:2900000
KS ci ratio: 1.131604e+00	ci left: 1.893505e-06	ci right 6.786900e-06	k: 11	n:2900000
C9orf150   2900000 perm   3398 sec   (853 perm/sec)   p_kst 3.793103e-06   p_cons 9.945548e-01   p_joint 8.275862e-06

Joint ci ratio: 7.839965e-01	ci left: 5.284286e-06	ci right 1.227149e-05	k: 24	n:2910000
Cons ci ratio: 1.700943e-04	ci left: 9.944660e-01	ci right 9.946355e-01	k: 2894144	n:2910000
KS ci ratio: 1.131604e+00	ci left: 1.886998e-06	ci right 6.763577e-06	k: 11	n:2910000
C9orf150   2910000 perm   3420 sec   (851 perm/sec)   p_kst 3.780069e-06   p_cons 9.945512e-01   p_joint 8.247423e-06

Joint ci ratio: 7.839965e-01	ci left: 5.266189e-06	ci right 1.222946e-05	k: 24	n:2920000
Cons ci ratio: 1.698699e-04	ci left: 9.944618e-01	ci right 9.946311e-01	k: 2904077	n:2920000
KS ci ratio: 1.131604e+00	ci left: 1.880536e-06	ci right 6.740414e-06	k: 11	n:2920000
C9orf150   2920000 perm   3442 sec   (848 perm/sec)   p_kst 3.767123e-06   p_cons 9.945469e-01   p_joint 8.219178e-06

Joint ci ratio: 7.839965e-01	ci left: 5.248216e-06	ci right 1.218772e-05	k: 24	n:2930000
Cons ci ratio: 1.694968e-04	ci left: 9.944673e-01	ci right 9.946362e-01	k: 2914038	n:2930000
KS ci ratio: 1.131604e+00	ci left: 1.874118e-06	ci right 6.717409e-06	k: 11	n:2930000
C9orf150   2930000 perm   3465 sec   (846 perm/sec)   p_kst 3.754266e-06   p_cons 9.945522e-01   p_joint 8.191126e-06

Joint ci ratio: 7.839965e-01	ci left: 5.230365e-06	ci right 1.214627e-05	k: 24	n:2940000
Cons ci ratio: 1.692589e-04	ci left: 9.944642e-01	ci right 9.946328e-01	k: 2923974	n:2940000
KS ci ratio: 1.131604e+00	ci left: 1.867743e-06	ci right 6.694561e-06	k: 11	n:2940000
C9orf150   2940000 perm   3487 sec   (843 perm/sec)   p_kst 3.741497e-06   p_cons 9.945490e-01   p_joint 8.163265e-06

Joint ci ratio: 7.839965e-01	ci left: 5.212635e-06	ci right 1.210509e-05	k: 24	n:2950000
Cons ci ratio: 1.689532e-04	ci left: 9.944655e-01	ci right 9.946339e-01	k: 2933923	n:2950000
KS ci ratio: 1.131604e+00	ci left: 1.861412e-06	ci right 6.671868e-06	k: 11	n:2950000
C9orf150   2950000 perm   3509 sec   (841 perm/sec)   p_kst 3.728814e-06   p_cons 9.945502e-01   p_joint 8.135593e-06

Joint ci ratio: 7.839966e-01	ci left: 5.195025e-06	ci right 1.206420e-05	k: 24	n:2960000
Cons ci ratio: 1.686124e-04	ci left: 9.944692e-01	ci right 9.946372e-01	k: 2943879	n:2960000
KS ci ratio: 1.131604e+00	ci left: 1.855123e-06	ci right 6.649328e-06	k: 11	n:2960000
C9orf150   2960000 perm   3531 sec   (838 perm/sec)   p_kst 3.716216e-06   p_cons 9.945537e-01   p_joint 8.108108e-06

Joint ci ratio: 7.839966e-01	ci left: 5.177533e-06	ci right 1.202358e-05	k: 24	n:2970000
Cons ci ratio: 1.682997e-04	ci left: 9.944712e-01	ci right 9.946389e-01	k: 2953830	n:2970000
KS ci ratio: 1.131604e+00	ci left: 1.848877e-06	ci right 6.626939e-06	k: 11	n:2970000
C9orf150   2970000 perm   3553 sec   (836 perm/sec)   p_kst 3.703704e-06   p_cons 9.945556e-01   p_joint 8.080808e-06

Joint ci ratio: 7.687718e-01	ci left: 5.429095e-06	ci right 1.238418e-05	k: 25	n:2980000
Cons ci ratio: 1.680095e-04	ci left: 9.944718e-01	ci right 9.946393e-01	k: 2963777	n:2980000
KS ci ratio: 1.131604e+00	ci left: 1.842673e-06	ci right 6.604701e-06	k: 11	n:2980000
C9orf150   2980000 perm   3575 sec   (833 perm/sec)   p_kst 3.691275e-06   p_cons 9.945560e-01   p_joint 8.389262e-06

Joint ci ratio: 7.687718e-01	ci left: 5.410937e-06	ci right 1.234276e-05	k: 25	n:2990000
Cons ci ratio: 1.676742e-04	ci left: 9.944755e-01	ci right 9.946426e-01	k: 2973733	n:2990000
KS ci ratio: 1.131604e+00	ci left: 1.836510e-06	ci right 6.582612e-06	k: 11	n:2990000
C9orf150   2990000 perm   3597 sec   (831 perm/sec)   p_kst 3.678930e-06   p_cons 9.945595e-01   p_joint 8.361204e-06

Joint ci ratio: 7.687718e-01	ci left: 5.392901e-06	ci right 1.230162e-05	k: 25	n:3000000
Cons ci ratio: 1.674130e-04	ci left: 9.944744e-01	ci right 9.946413e-01	k: 2983675	n:3000000
KS ci ratio: 1.131604e+00	ci left: 1.830388e-06	ci right 6.560670e-06	k: 11	n:3000000
C9orf150   3000000 perm   3620 sec   (829 perm/sec)   p_kst 3.666667e-06   p_cons 9.945583e-01   p_joint 8.333333e-06

Joint ci ratio: 7.687718e-01	ci left: 5.374984e-06	ci right 1.226075e-05	k: 25	n:3010000
Cons ci ratio: 1.671633e-04	ci left: 9.944727e-01	ci right 9.946393e-01	k: 2993615	n:3010000
KS ci ratio: 1.131604e+00	ci left: 1.824307e-06	ci right 6.538874e-06	k: 11	n:3010000
C9orf150   3010000 perm   3643 sec   (826 perm/sec)   p_kst 3.654485e-06   p_cons 9.945565e-01   p_joint 8.305648e-06

Joint ci ratio: 7.687718e-01	ci left: 5.357186e-06	ci right 1.222015e-05	k: 25	n:3020000
Cons ci ratio: 1.669249e-04	ci left: 9.944703e-01	ci right 9.946367e-01	k: 3003553	n:3020000
KS ci ratio: 1.131604e+00	ci left: 1.818266e-06	ci right 6.517222e-06	k: 11	n:3020000
C9orf150   3020000 perm   3666 sec   (824 perm/sec)   p_kst 3.642384e-06   p_cons 9.945540e-01   p_joint 8.278146e-06

Joint ci ratio: 7.687718e-01	ci left: 5.339506e-06	ci right 1.217982e-05	k: 25	n:3030000
Cons ci ratio: 1.665758e-04	ci left: 9.944753e-01	ci right 9.946413e-01	k: 3013513	n:3030000
KS ci ratio: 1.131604e+00	ci left: 1.812265e-06	ci right 6.495713e-06	k: 11	n:3030000
C9orf150   3030000 perm   3689 sec   (821 perm/sec)   p_kst 3.630363e-06   p_cons 9.945587e-01   p_joint 8.250825e-06

Joint ci ratio: 7.687718e-01	ci left: 5.321942e-06	ci right 1.213976e-05	k: 25	n:3040000
Cons ci ratio: 1.662945e-04	ci left: 9.944759e-01	ci right 9.946416e-01	k: 3023460	n:3040000
KS ci ratio: 1.131604e+00	ci left: 1.806304e-06	ci right 6.474346e-06	k: 11	n:3040000
C9orf150   3040000 perm   3712 sec   (819 perm/sec)   p_kst 3.618421e-06   p_cons 9.945592e-01   p_joint 8.223684e-06

Joint ci ratio: 7.687718e-01	ci left: 5.304493e-06	ci right 1.209995e-05	k: 25	n:3050000
Cons ci ratio: 1.660397e-04	ci left: 9.944748e-01	ci right 9.946403e-01	k: 3033402	n:3050000
KS ci ratio: 1.131604e+00	ci left: 1.800382e-06	ci right 6.453118e-06	k: 11	n:3050000
C9orf150   3050000 perm   3735 sec   (817 perm/sec)   p_kst 3.606557e-06   p_cons 9.945580e-01   p_joint 8.196721e-06

Joint ci ratio: 7.687719e-01	ci left: 5.287158e-06	ci right 1.206041e-05	k: 25	n:3060000
Cons ci ratio: 1.658010e-04	ci left: 9.944728e-01	ci right 9.946380e-01	k: 3043341	n:3060000
KS ci ratio: 1.131604e+00	ci left: 1.794498e-06	ci right 6.432030e-06	k: 11	n:3060000
C9orf150   3060000 perm   3758 sec   (814 perm/sec)   p_kst 3.594771e-06   p_cons 9.945559e-01   p_joint 8.169935e-06

Joint ci ratio: 7.544009e-01	ci left: 5.532275e-06	ci right 1.240910e-05	k: 26	n:3070000
Cons ci ratio: 1.655136e-04	ci left: 9.944741e-01	ci right 9.946390e-01	k: 3053290	n:3070000
KS ci ratio: 1.131604e+00	ci left: 1.788653e-06	ci right 6.411078e-06	k: 11	n:3070000
C9orf150   3070000 perm   3781 sec   (812 perm/sec)   p_kst 3.583062e-06   p_cons 9.945570e-01   p_joint 8.469055e-06

Joint ci ratio: 7.544009e-01	ci left: 5.514313e-06	ci right 1.236881e-05	k: 26	n:3080000
Cons ci ratio: 1.652327e-04	ci left: 9.944750e-01	ci right 9.946397e-01	k: 3063238	n:3080000
KS ci ratio: 1.131604e+00	ci left: 1.782846e-06	ci right 6.390263e-06	k: 11	n:3080000
C9orf150   3080000 perm   3805 sec   (810 perm/sec)   p_kst 3.571429e-06   p_cons 9.945578e-01   p_joint 8.441558e-06

Joint ci ratio: 7.544009e-01	ci left: 5.496468e-06	ci right 1.232879e-05	k: 26	n:3090000
Cons ci ratio: 1.649630e-04	ci left: 9.944753e-01	ci right 9.946397e-01	k: 3073184	n:3090000
KS ci ratio: 1.131604e+00	ci left: 1.777076e-06	ci right 6.369583e-06	k: 11	n:3090000
C9orf150   3090000 perm   3828 sec   (807 perm/sec)   p_kst 3.559871e-06   p_cons 9.945579e-01   p_joint 8.414239e-06

Joint ci ratio: 7.544009e-01	ci left: 5.478737e-06	ci right 1.228902e-05	k: 26	n:3100000
Cons ci ratio: 1.646701e-04	ci left: 9.944772e-01	ci right 9.946413e-01	k: 3083135	n:3100000
KS ci ratio: 1.131604e+00	ci left: 1.771343e-06	ci right 6.349036e-06	k: 11	n:3100000
C9orf150   3100000 perm   3851 sec   (805 perm/sec)   p_kst 3.548387e-06   p_cons 9.945597e-01   p_joint 8.387097e-06

Joint ci ratio: 7.544010e-01	ci left: 5.461121e-06	ci right 1.224950e-05	k: 26	n:3110000
Cons ci ratio: 1.644422e-04	ci left: 9.944748e-01	ci right 9.946387e-01	k: 3093073	n:3110000
KS ci ratio: 1.131604e+00	ci left: 1.765648e-06	ci right 6.328621e-06	k: 11	n:3110000
C9orf150   3110000 perm   3874 sec   (803 perm/sec)   p_kst 3.536977e-06   p_cons 9.945572e-01   p_joint 8.360129e-06

Joint ci ratio: 7.544010e-01	ci left: 5.443617e-06	ci right 1.221024e-05	k: 26	n:3120000
Cons ci ratio: 1.641521e-04	ci left: 9.944767e-01	ci right 9.946403e-01	k: 3103024	n:3120000
KS ci ratio: 1.131604e+00	ci left: 1.759989e-06	ci right 6.308337e-06	k: 11	n:3120000
C9orf150   3120000 perm   3898 sec   (800 perm/sec)   p_kst 3.525641e-06   p_cons 9.945590e-01   p_joint 8.333333e-06

Joint ci ratio: 7.544010e-01	ci left: 5.426225e-06	ci right 1.217123e-05	k: 26	n:3130000
Cons ci ratio: 1.638973e-04	ci left: 9.944763e-01	ci right 9.946397e-01	k: 3112968	n:3130000
KS ci ratio: 1.131604e+00	ci left: 1.754366e-06	ci right 6.288182e-06	k: 11	n:3130000
C9orf150   3130000 perm   3921 sec   (798 perm/sec)   p_kst 3.514377e-06   p_cons 9.945585e-01   p_joint 8.306709e-06

Joint ci ratio: 7.544010e-01	ci left: 5.408944e-06	ci right 1.213247e-05	k: 26	n:3140000
Cons ci ratio: 1.636437e-04	ci left: 9.944760e-01	ci right 9.946390e-01	k: 3122912	n:3140000
KS ci ratio: 1.131604e+00	ci left: 1.748778e-06	ci right 6.268156e-06	k: 11	n:3140000
C9orf150   3140000 perm   3944 sec   (796 perm/sec)   p_kst 3.503185e-06   p_cons 9.945580e-01   p_joint 8.280255e-06

Joint ci ratio: 7.544010e-01	ci left: 5.391773e-06	ci right 1.209395e-05	k: 26	n:3150000
Cons ci ratio: 1.633961e-04	ci left: 9.944753e-01	ci right 9.946381e-01	k: 3132855	n:3150000
KS ci ratio: 1.131604e+00	ci left: 1.743227e-06	ci right 6.248258e-06	k: 11	n:3150000
C9orf150   3150000 perm   3969 sec   (794 perm/sec)   p_kst 3.492063e-06   p_cons 9.945571e-01   p_joint 8.253968e-06

Joint ci ratio: 7.544010e-01	ci left: 5.374710e-06	ci right 1.205568e-05	k: 26	n:3160000
Cons ci ratio: 1.631306e-04	ci left: 9.944759e-01	ci right 9.946384e-01	k: 3142802	n:3160000
KS ci ratio: 1.131604e+00	ci left: 1.737710e-06	ci right 6.228485e-06	k: 11	n:3160000
C9orf150   3160000 perm   3993 sec   (791 perm/sec)   p_kst 3.481013e-06   p_cons 9.945576e-01   p_joint 8.227848e-06

Joint ci ratio: 7.544010e-01	ci left: 5.357755e-06	ci right 1.201765e-05	k: 26	n:3170000
Cons ci ratio: 1.628805e-04	ci left: 9.944755e-01	ci right 9.946378e-01	k: 3152746	n:3170000
KS ci ratio: 1.131604e+00	ci left: 1.732228e-06	ci right 6.208836e-06	k: 11	n:3170000
C9orf150   3170000 perm   4017 sec   (789 perm/sec)   p_kst 3.470032e-06   p_cons 9.945571e-01   p_joint 8.201893e-06

Joint ci ratio: 7.544010e-01	ci left: 5.340907e-06	ci right 1.197986e-05	k: 26	n:3180000
Cons ci ratio: 1.626269e-04	ci left: 9.944754e-01	ci right 9.946375e-01	k: 3162691	n:3180000
KS ci ratio: 1.131604e+00	ci left: 1.726781e-06	ci right 6.189312e-06	k: 11	n:3180000
C9orf150   3180000 perm   4042 sec   (787 perm/sec)   p_kst 3.459119e-06   p_cons 9.945569e-01   p_joint 8.176101e-06

Joint ci ratio: 7.544010e-01	ci left: 5.324164e-06	ci right 1.194230e-05	k: 26	n:3190000
Cons ci ratio: 1.624121e-04	ci left: 9.944729e-01	ci right 9.946347e-01	k: 3172628	n:3190000
KS ci ratio: 1.131604e+00	ci left: 1.721368e-06	ci right 6.169910e-06	k: 11	n:3190000
C9orf150   3190000 perm   4066 sec   (785 perm/sec)   p_kst 3.448276e-06   p_cons 9.945542e-01   p_joint 8.150470e-06

Joint ci ratio: 7.544011e-01	ci left: 5.307526e-06	ci right 1.190499e-05	k: 26	n:3200000
Cons ci ratio: 1.621840e-04	ci left: 9.944712e-01	ci right 9.946329e-01	k: 3182568	n:3200000
KS ci ratio: 1.131604e+00	ci left: 1.715989e-06	ci right 6.150629e-06	k: 11	n:3200000
C9orf150   3200000 perm   4090 sec   (782 perm/sec)   p_kst 3.437500e-06   p_cons 9.945525e-01   p_joint 8.125000e-06

Joint ci ratio: 7.544011e-01	ci left: 5.290992e-06	ci right 1.186790e-05	k: 26	n:3210000
Cons ci ratio: 1.619010e-04	ci left: 9.944734e-01	ci right 9.946347e-01	k: 3192520	n:3210000
KS ci ratio: 1.131604e+00	ci left: 1.710643e-06	ci right 6.131468e-06	k: 11	n:3210000
C9orf150   3210000 perm   4114 sec   (780 perm/sec)   p_kst 3.426791e-06   p_cons 9.945545e-01   p_joint 8.099688e-06

Joint ci ratio: 7.544011e-01	ci left: 5.274560e-06	ci right 1.183104e-05	k: 26	n:3220000
Cons ci ratio: 1.616751e-04	ci left: 9.944718e-01	ci right 9.946329e-01	k: 3202460	n:3220000
KS ci ratio: 1.131604e+00	ci left: 1.705331e-06	ci right 6.112426e-06	k: 11	n:3220000
C9orf150   3220000 perm   4137 sec   (778 perm/sec)   p_kst 3.416149e-06   p_cons 9.945528e-01   p_joint 8.074534e-06

Joint ci ratio: 7.544011e-01	ci left: 5.258230e-06	ci right 1.179441e-05	k: 26	n:3230000
Cons ci ratio: 1.614594e-04	ci left: 9.944696e-01	ci right 9.946305e-01	k: 3212398	n:3230000
KS ci ratio: 1.131604e+00	ci left: 1.700051e-06	ci right 6.093502e-06	k: 11	n:3230000
C9orf150   3230000 perm   4162 sec   (776 perm/sec)   p_kst 3.405573e-06   p_cons 9.945505e-01   p_joint 8.049536e-06

Joint ci ratio: 7.544011e-01	ci left: 5.242001e-06	ci right 1.175801e-05	k: 26	n:3240000
Cons ci ratio: 1.612123e-04	ci left: 9.944695e-01	ci right 9.946302e-01	k: 3222343	n:3240000
KS ci ratio: 1.131604e+00	ci left: 1.694804e-06	ci right 6.074695e-06	k: 11	n:3240000
C9orf150   3240000 perm   4186 sec   (774 perm/sec)   p_kst 3.395062e-06   p_cons 9.945503e-01   p_joint 8.024691e-06

Joint ci ratio: 7.544011e-01	ci left: 5.225872e-06	ci right 1.172183e-05	k: 26	n:3250000
Cons ci ratio: 1.609846e-04	ci left: 9.944683e-01	ci right 9.946287e-01	k: 3232284	n:3250000
KS ci ratio: 1.131604e+00	ci left: 1.689589e-06	ci right 6.056004e-06	k: 11	n:3250000
C9orf150   3250000 perm   4210 sec   (772 perm/sec)   p_kst 3.384615e-06   p_cons 9.945489e-01   p_joint 8.000000e-06

Joint ci ratio: 7.544011e-01	ci left: 5.209842e-06	ci right 1.168588e-05	k: 26	n:3260000
Cons ci ratio: 1.607534e-04	ci left: 9.944673e-01	ci right 9.946275e-01	k: 3242226	n:3260000
KS ci ratio: 1.131604e+00	ci left: 1.684406e-06	ci right 6.037427e-06	k: 11	n:3260000
C9orf150   3260000 perm   4235 sec   (770 perm/sec)   p_kst 3.374233e-06   p_cons 9.945479e-01   p_joint 7.975460e-06

Joint ci ratio: 7.544011e-01	ci left: 5.193909e-06	ci right 1.165014e-05	k: 26	n:3270000
Cons ci ratio: 1.604915e-04	ci left: 9.944685e-01	ci right 9.946284e-01	k: 3252175	n:3270000
KS ci ratio: 1.131604e+00	ci left: 1.679255e-06	ci right 6.018964e-06	k: 11	n:3270000
C9orf150   3270000 perm   4259 sec   (768 perm/sec)   p_kst 3.363914e-06   p_cons 9.945489e-01   p_joint 7.951070e-06

Joint ci ratio: 7.544011e-01	ci left: 5.178074e-06	ci right 1.161462e-05	k: 26	n:3280000
Cons ci ratio: 1.602668e-04	ci left: 9.944673e-01	ci right 9.946270e-01	k: 3262116	n:3280000
KS ci ratio: 1.131604e+00	ci left: 1.674135e-06	ci right 6.000614e-06	k: 11	n:3280000
C9orf150   3280000 perm   4284 sec   (766 perm/sec)   p_kst 3.353659e-06   p_cons 9.945476e-01   p_joint 7.926829e-06

Joint ci ratio: 7.544011e-01	ci left: 5.162336e-06	ci right 1.157932e-05	k: 26	n:3290000
Cons ci ratio: 1.599893e-04	ci left: 9.944697e-01	ci right 9.946291e-01	k: 3272069	n:3290000
KS ci ratio: 1.131604e+00	ci left: 1.669047e-06	ci right 5.982375e-06	k: 11	n:3290000
C9orf150   3290000 perm   4308 sec   (764 perm/sec)   p_kst 3.343465e-06   p_cons 9.945498e-01   p_joint 7.902736e-06

Joint ci ratio: 7.544012e-01	ci left: 5.146692e-06	ci right 1.154423e-05	k: 26	n:3300000
Cons ci ratio: 1.597132e-04	ci left: 9.944721e-01	ci right 9.946313e-01	k: 3282022	n:3300000
KS ci ratio: 1.131604e+00	ci left: 1.663989e-06	ci right 5.964246e-06	k: 11	n:3300000
C9orf150   3300000 perm   4332 sec   (762 perm/sec)   p_kst 3.333333e-06   p_cons 9.945521e-01   p_joint 7.878788e-06

Joint ci ratio: 7.408071e-01	ci left: 5.375587e-06	ci right 1.186813e-05	k: 27	n:3310000
Cons ci ratio: 1.594474e-04	ci left: 9.944739e-01	ci right 9.946328e-01	k: 3291973	n:3310000
KS ci ratio: 1.131604e+00	ci left: 1.658962e-06	ci right 5.946227e-06	k: 11	n:3310000
C9orf150   3310000 perm   4357 sec   (760 perm/sec)   p_kst 3.323263e-06   p_cons 9.945538e-01   p_joint 8.157100e-06

Joint ci ratio: 7.408071e-01	ci left: 5.359395e-06	ci right 1.183238e-05	k: 27	n:3320000
Cons ci ratio: 1.592050e-04	ci left: 9.944742e-01	ci right 9.946328e-01	k: 3301919	n:3320000
KS ci ratio: 1.131604e+00	ci left: 1.653965e-06	ci right 5.928317e-06	k: 11	n:3320000
C9orf150   3320000 perm   4383 sec   (758 perm/sec)   p_kst 3.313253e-06   p_cons 9.945539e-01   p_joint 8.132530e-06

Joint ci ratio: 7.408071e-01	ci left: 5.343301e-06	ci right 1.179685e-05	k: 27	n:3330000
Cons ci ratio: 1.589373e-04	ci left: 9.944762e-01	ci right 9.946346e-01	k: 3311871	n:3330000
KS ci ratio: 1.131604e+00	ci left: 1.648998e-06	ci right 5.910514e-06	k: 11	n:3330000
C9orf150   3330000 perm   4408 sec   (755 perm/sec)   p_kst 3.303303e-06   p_cons 9.945559e-01   p_joint 8.108108e-06

Joint ci ratio: 7.408072e-01	ci left: 5.327303e-06	ci right 1.176153e-05	k: 27	n:3340000
Cons ci ratio: 1.586709e-04	ci left: 9.944783e-01	ci right 9.946364e-01	k: 3321823	n:3340000
KS ci ratio: 1.131604e+00	ci left: 1.644061e-06	ci right 5.892818e-06	k: 11	n:3340000
C9orf150   3340000 perm   4433 sec   (753 perm/sec)   p_kst 3.293413e-06   p_cons 9.945578e-01   p_joint 8.083832e-06

Joint ci ratio: 7.408072e-01	ci left: 5.311401e-06	ci right 1.172642e-05	k: 27	n:3350000
Cons ci ratio: 1.584321e-04	ci left: 9.944786e-01	ci right 9.946364e-01	k: 3331769	n:3350000
KS ci ratio: 1.131604e+00	ci left: 1.639153e-06	ci right 5.875228e-06	k: 11	n:3350000
C9orf150   3350000 perm   4459 sec   (751 perm/sec)   p_kst 3.283582e-06   p_cons 9.945579e-01   p_joint 8.059701e-06

Joint ci ratio: 7.408072e-01	ci left: 5.295593e-06	ci right 1.169152e-05	k: 27	n:3360000
Cons ci ratio: 1.581247e-04	ci left: 9.944836e-01	ci right 9.946411e-01	k: 3341731	n:3360000
KS ci ratio: 1.131604e+00	ci left: 1.634275e-06	ci right 5.857742e-06	k: 11	n:3360000
C9orf150   3360000 perm   4484 sec   (749 perm/sec)   p_kst 3.273810e-06   p_cons 9.945628e-01   p_joint 8.035714e-06

Joint ci ratio: 7.408072e-01	ci left: 5.279879e-06	ci right 1.165683e-05	k: 27	n:3370000
Cons ci ratio: 1.579316e-04	ci left: 9.944808e-01	ci right 9.946382e-01	k: 3351667	n:3370000
KS ci ratio: 1.131604e+00	ci left: 1.629426e-06	ci right 5.840360e-06	k: 11	n:3370000
C9orf150   3370000 perm   4510 sec   (747 perm/sec)   p_kst 3.264095e-06   p_cons 9.945599e-01   p_joint 8.011869e-06

Joint ci ratio: 7.408072e-01	ci left: 5.264258e-06	ci right 1.162234e-05	k: 27	n:3380000
Cons ci ratio: 1.576745e-04	ci left: 9.944826e-01	ci right 9.946397e-01	k: 3361618	n:3380000
KS ci ratio: 1.131604e+00	ci left: 1.624605e-06	ci right 5.823081e-06	k: 11	n:3380000
C9orf150   3380000 perm   4535 sec   (745 perm/sec)   p_kst 3.254438e-06   p_cons 9.945615e-01   p_joint 7.988166e-06

Joint ci ratio: 7.408072e-01	ci left: 5.248729e-06	ci right 1.158806e-05	k: 27	n:3390000
Cons ci ratio: 1.574015e-04	ci left: 9.944855e-01	ci right 9.946423e-01	k: 3371573	n:3390000
KS ci ratio: 1.131604e+00	ci left: 1.619812e-06	ci right 5.805904e-06	k: 11	n:3390000
C9orf150   3390000 perm   4561 sec   (743 perm/sec)   p_kst 3.244838e-06   p_cons 9.945643e-01   p_joint 7.964602e-06

Joint ci ratio: 7.408072e-01	ci left: 5.233292e-06	ci right 1.155397e-05	k: 27	n:3400000
Cons ci ratio: 1.571213e-04	ci left: 9.944889e-01	ci right 9.946455e-01	k: 3381530	n:3400000
KS ci ratio: 1.131604e+00	ci left: 1.615048e-06	ci right 5.788827e-06	k: 11	n:3400000
C9orf150   3400000 perm   4586 sec   (741 perm/sec)   p_kst 3.235294e-06   p_cons 9.945676e-01   p_joint 7.941176e-06

Joint ci ratio: 7.279225e-01	ci left: 5.456252e-06	ci right 1.186737e-05	k: 28	n:3410000
Cons ci ratio: 1.568723e-04	ci left: 9.944903e-01	ci right 9.946466e-01	k: 3391480	n:3410000
KS ci ratio: 1.131604e+00	ci left: 1.610312e-06	ci right 5.771851e-06	k: 11	n:3410000
C9orf150   3410000 perm   4612 sec   (739 perm/sec)   p_kst 3.225806e-06   p_cons 9.945689e-01   p_joint 8.211144e-06

Joint ci ratio: 7.279225e-01	ci left: 5.440298e-06	ci right 1.183267e-05	k: 28	n:3420000
Cons ci ratio: 1.566075e-04	ci left: 9.944929e-01	ci right 9.946489e-01	k: 3401434	n:3420000
KS ci ratio: 1.131604e+00	ci left: 1.605604e-06	ci right 5.754975e-06	k: 11	n:3420000
C9orf150   3420000 perm   4637 sec   (737 perm/sec)   p_kst 3.216374e-06   p_cons 9.945713e-01   p_joint 8.187135e-06

Joint ci ratio: 7.279225e-01	ci left: 5.424437e-06	ci right 1.179817e-05	k: 28	n:3430000
Cons ci ratio: 1.564074e-04	ci left: 9.944910e-01	ci right 9.946469e-01	k: 3411373	n:3430000
KS ci ratio: 1.131604e+00	ci left: 1.600922e-06	ci right 5.738196e-06	k: 11	n:3430000
C9orf150   3430000 perm   4663 sec   (736 perm/sec)   p_kst 3.206997e-06   p_cons 9.945694e-01   p_joint 8.163265e-06

Joint ci ratio: 7.279226e-01	ci left: 5.408668e-06	ci right 1.176387e-05	k: 28	n:3440000
Cons ci ratio: 1.561786e-04	ci left: 9.944913e-01	ci right 9.946469e-01	k: 3421319	n:3440000
KS ci ratio: 1.131604e+00	ci left: 1.596269e-06	ci right 5.721516e-06	k: 11	n:3440000
C9orf150   3440000 perm   4689 sec   (734 perm/sec)   p_kst 3.197674e-06   p_cons 9.945695e-01   p_joint 8.139535e-06

Joint ci ratio: 7.156876e-01	ci left: 5.629501e-06	ci right 1.207210e-05	k: 29	n:3450000
Cons ci ratio: 1.559131e-04	ci left: 9.944941e-01	ci right 9.946494e-01	k: 3431274	n:3450000
KS ci ratio: 1.131604e+00	ci left: 1.591642e-06	ci right 5.704932e-06	k: 11	n:3450000
C9orf150   3450000 perm   4714 sec   (732 perm/sec)   p_kst 3.188406e-06   p_cons 9.945722e-01   p_joint 8.405797e-06

Joint ci ratio: 7.156876e-01	ci left: 5.613231e-06	ci right 1.203721e-05	k: 29	n:3460000
Cons ci ratio: 1.557157e-04	ci left: 9.944922e-01	ci right 9.946474e-01	k: 3441213	n:3460000
KS ci ratio: 1.131604e+00	ci left: 1.587042e-06	ci right 5.688443e-06	k: 11	n:3460000
C9orf150   3460000 perm   4740 sec   (730 perm/sec)   p_kst 3.179191e-06   p_cons 9.945702e-01   p_joint 8.381503e-06

Joint ci ratio: 7.408073e-01	ci left: 5.127721e-06	ci right 1.132090e-05	k: 27	n:3470000
Cons ci ratio: 1.554608e-04	ci left: 9.944945e-01	ci right 9.946494e-01	k: 3451166	n:3470000
KS ci ratio: 1.131604e+00	ci left: 1.582468e-06	ci right 5.672050e-06	k: 11	n:3470000
C9orf150   3470000 perm   4767 sec   (728 perm/sec)   p_kst 3.170029e-06   p_cons 9.945723e-01   p_joint 7.780980e-06

Joint ci ratio: 7.408073e-01	ci left: 5.112986e-06	ci right 1.128837e-05	k: 27	n:3480000
Cons ci ratio: 1.551990e-04	ci left: 9.944973e-01	ci right 9.946519e-01	k: 3461121	n:3480000
KS ci ratio: 1.131604e+00	ci left: 1.577921e-06	ci right 5.655751e-06	k: 11	n:3480000
C9orf150   3480000 perm   4793 sec   (726 perm/sec)   p_kst 3.160920e-06   p_cons 9.945750e-01   p_joint 7.758621e-06

Joint ci ratio: 7.408073e-01	ci left: 5.098336e-06	ci right 1.125602e-05	k: 27	n:3490000
Cons ci ratio: 1.550289e-04	ci left: 9.944937e-01	ci right 9.946482e-01	k: 3471054	n:3490000
KS ci ratio: 1.131604e+00	ci left: 1.573399e-06	ci right 5.639546e-06	k: 11	n:3490000
C9orf150   3490000 perm   4819 sec   (724 perm/sec)   p_kst 3.151862e-06   p_cons 9.945713e-01   p_joint 7.736390e-06

Joint ci ratio: 7.408073e-01	ci left: 5.083769e-06	ci right 1.122386e-05	k: 27	n:3500000
Cons ci ratio: 1.548429e-04	ci left: 9.944913e-01	ci right 9.946456e-01	k: 3480991	n:3500000
KS ci ratio: 1.131604e+00	ci left: 1.568904e-06	ci right 5.623433e-06	k: 11	n:3500000
C9orf150   3500000 perm   4845 sec   (722 perm/sec)   p_kst 3.142857e-06   p_cons 9.945689e-01   p_joint 7.714286e-06

Joint ci ratio: 7.408073e-01	ci left: 5.069285e-06	ci right 1.119188e-05	k: 27	n:3510000
Cons ci ratio: 1.546739e-04	ci left: 9.944878e-01	ci right 9.946419e-01	k: 3490924	n:3510000
KS ci ratio: 1.131604e+00	ci left: 1.564434e-06	ci right 5.607411e-06	k: 11	n:3510000
C9orf150   3510000 perm   4872 sec   (720 perm/sec)   p_kst 3.133903e-06   p_cons 9.945652e-01   p_joint 7.692308e-06

Joint ci ratio: 7.408073e-01	ci left: 5.054884e-06	ci right 1.116009e-05	k: 27	n:3520000
Cons ci ratio: 1.544526e-04	ci left: 9.944880e-01	ci right 9.946419e-01	k: 3500870	n:3520000
KS ci ratio: 1.131604e+00	ci left: 1.559990e-06	ci right 5.591481e-06	k: 11	n:3520000
C9orf150   3520000 perm   4898 sec   (719 perm/sec)   p_kst 3.125000e-06   p_cons 9.945653e-01   p_joint 7.670455e-06

Joint ci ratio: 7.408073e-01	ci left: 5.040564e-06	ci right 1.112847e-05	k: 27	n:3530000
Cons ci ratio: 1.542283e-04	ci left: 9.944885e-01	ci right 9.946421e-01	k: 3510817	n:3530000
KS ci ratio: 1.131604e+00	ci left: 1.555571e-06	ci right 5.575641e-06	k: 11	n:3530000
C9orf150   3530000 perm   4925 sec   (717 perm/sec)   p_kst 3.116147e-06   p_cons 9.945657e-01   p_joint 7.648725e-06

Joint ci ratio: 7.408073e-01	ci left: 5.026325e-06	ci right 1.109704e-05	k: 27	n:3540000
Cons ci ratio: 1.539888e-04	ci left: 9.944901e-01	ci right 9.946435e-01	k: 3520768	n:3540000
KS ci ratio: 1.131604e+00	ci left: 1.551176e-06	ci right 5.559891e-06	k: 11	n:3540000
C9orf150   3540000 perm   4951 sec   (715 perm/sec)   p_kst 3.107345e-06   p_cons 9.945672e-01   p_joint 7.627119e-06

Joint ci ratio: 7.408073e-01	ci left: 5.012166e-06	ci right 1.106578e-05	k: 27	n:3550000
Cons ci ratio: 1.537544e-04	ci left: 9.944914e-01	ci right 9.946446e-01	k: 3530718	n:3550000
KS ci ratio: 1.131604e+00	ci left: 1.546807e-06	ci right 5.544229e-06	k: 11	n:3550000
C9orf150   3550000 perm   4978 sec   (713 perm/sec)   p_kst 3.098592e-06   p_cons 9.945685e-01   p_joint 7.605634e-06

Joint ci ratio: 7.408073e-01	ci left: 4.998087e-06	ci right 1.103470e-05	k: 27	n:3560000
Cons ci ratio: 1.535569e-04	ci left: 9.944902e-01	ci right 9.946432e-01	k: 3540659	n:3560000
KS ci ratio: 1.131604e+00	ci left: 1.542462e-06	ci right 5.528656e-06	k: 11	n:3560000
C9orf150   3560000 perm   5005 sec   (711 perm/sec)   p_kst 3.089888e-06   p_cons 9.945671e-01   p_joint 7.584270e-06

Joint ci ratio: 7.279227e-01	ci left: 5.211714e-06	ci right 1.133550e-05	k: 28	n:3570000
Cons ci ratio: 1.533802e-04	ci left: 9.944876e-01	ci right 9.946404e-01	k: 3550595	n:3570000
KS ci ratio: 1.131604e+00	ci left: 1.538141e-06	ci right 5.513169e-06	k: 11	n:3570000
C9orf150   3570000 perm   5031 sec   (710 perm/sec)   p_kst 3.081232e-06   p_cons 9.945644e-01   p_joint 7.843137e-06

Joint ci ratio: 7.279227e-01	ci left: 5.197156e-06	ci right 1.130383e-05	k: 28	n:3580000
Cons ci ratio: 1.531604e-04	ci left: 9.944881e-01	ci right 9.946407e-01	k: 3560542	n:3580000
KS ci ratio: 1.131604e+00	ci left: 1.533845e-06	ci right 5.497769e-06	k: 11	n:3580000
C9orf150   3580000 perm   5058 sec   (708 perm/sec)   p_kst 3.072626e-06   p_cons 9.945648e-01   p_joint 7.821229e-06

Joint ci ratio: 7.279227e-01	ci left: 5.182679e-06	ci right 1.127235e-05	k: 28	n:3590000
Cons ci ratio: 1.529455e-04	ci left: 9.944883e-01	ci right 9.946407e-01	k: 3570488	n:3590000
KS ci ratio: 1.131604e+00	ci left: 1.529572e-06	ci right 5.482455e-06	k: 11	n:3590000
C9orf150   3590000 perm   5085 sec   (706 perm/sec)   p_kst 3.064067e-06   p_cons 9.945649e-01   p_joint 7.799443e-06

Joint ci ratio: 7.156877e-01	ci left: 5.394938e-06	ci right 1.156910e-05	k: 29	n:3600000
Cons ci ratio: 1.526923e-04	ci left: 9.944913e-01	ci right 9.946434e-01	k: 3580444	n:3600000
KS ci ratio: 1.131604e+00	ci left: 1.525323e-06	ci right 5.467226e-06	k: 11	n:3600000
C9orf150   3600000 perm   5112 sec   (704 perm/sec)   p_kst 3.055556e-06   p_cons 9.945678e-01   p_joint 8.055556e-06

Joint ci ratio: 7.040497e-01	ci left: 5.606897e-06	ci right 1.186338e-05	k: 30	n:3610000
Cons ci ratio: 1.524912e-04	ci left: 9.944907e-01	ci right 9.946426e-01	k: 3590387	n:3610000
KS ci ratio: 1.087210e+00	ci left: 1.717612e-06	ci right 5.806526e-06	k: 12	n:3610000
C9orf150   3610000 perm   5139 sec   (702 perm/sec)   p_kst 3.324100e-06   p_cons 9.945670e-01   p_joint 8.310249e-06

Joint ci ratio: 7.040497e-01	ci left: 5.591408e-06	ci right 1.183060e-05	k: 30	n:3620000
Cons ci ratio: 1.522674e-04	ci left: 9.944917e-01	ci right 9.946434e-01	k: 3600336	n:3620000
KS ci ratio: 1.087210e+00	ci left: 1.712867e-06	ci right 5.790486e-06	k: 12	n:3620000
C9orf150   3620000 perm   5166 sec   (701 perm/sec)   p_kst 3.314917e-06   p_cons 9.945680e-01   p_joint 8.287293e-06

Joint ci ratio: 7.040497e-01	ci left: 5.576005e-06	ci right 1.179801e-05	k: 30	n:3630000
Cons ci ratio: 1.520834e-04	ci left: 9.944900e-01	ci right 9.946415e-01	k: 3610275	n:3630000
KS ci ratio: 1.087210e+00	ci left: 1.708149e-06	ci right 5.774534e-06	k: 12	n:3630000
C9orf150   3630000 perm   5193 sec   (699 perm/sec)   p_kst 3.305785e-06   p_cons 9.945661e-01   p_joint 8.264463e-06

Joint ci ratio: 7.040497e-01	ci left: 5.560686e-06	ci right 1.176560e-05	k: 30	n:3640000
Cons ci ratio: 1.518576e-04	ci left: 9.944913e-01	ci right 9.946426e-01	k: 3620225	n:3640000
KS ci ratio: 1.087210e+00	ci left: 1.703456e-06	ci right 5.758670e-06	k: 12	n:3640000
C9orf150   3640000 perm   5220 sec   (697 perm/sec)   p_kst 3.296703e-06   p_cons 9.945673e-01   p_joint 8.241758e-06

Joint ci ratio: 7.040497e-01	ci left: 5.545452e-06	ci right 1.173337e-05	k: 30	n:3650000
Cons ci ratio: 1.516712e-04	ci left: 9.944898e-01	ci right 9.946409e-01	k: 3630165	n:3650000
KS ci ratio: 1.087210e+00	ci left: 1.698789e-06	ci right 5.742893e-06	k: 12	n:3650000
C9orf150   3650000 perm   5248 sec   (696 perm/sec)   p_kst 3.287671e-06   p_cons 9.945658e-01   p_joint 8.219178e-06

Joint ci ratio: 7.040497e-01	ci left: 5.530300e-06	ci right 1.170131e-05	k: 30	n:3660000
Cons ci ratio: 1.514396e-04	ci left: 9.944917e-01	ci right 9.946425e-01	k: 3640117	n:3660000
KS ci ratio: 1.087210e+00	ci left: 1.694147e-06	ci right 5.727202e-06	k: 12	n:3660000
C9orf150   3660000 perm   5275 sec   (694 perm/sec)   p_kst 3.278689e-06   p_cons 9.945675e-01   p_joint 8.196721e-06

Joint ci ratio: 7.040497e-01	ci left: 5.515231e-06	ci right 1.166943e-05	k: 30	n:3670000
Cons ci ratio: 1.512510e-04	ci left: 9.944905e-01	ci right 9.946412e-01	k: 3650058	n:3670000
KS ci ratio: 1.087210e+00	ci left: 1.689531e-06	ci right 5.711597e-06	k: 12	n:3670000
C9orf150   3670000 perm   5303 sec   (692 perm/sec)   p_kst 3.269755e-06   p_cons 9.945662e-01   p_joint 8.174387e-06

Joint ci ratio: 6.929615e-01	ci left: 5.723647e-06	ci right 1.195705e-05	k: 31	n:3680000
Cons ci ratio: 1.510630e-04	ci left: 9.944893e-01	ci right 9.946398e-01	k: 3659999	n:3680000
KS ci ratio: 1.087210e+00	ci left: 1.684940e-06	ci right 5.696076e-06	k: 12	n:3680000
C9orf150   3680000 perm   5330 sec   (690 perm/sec)   p_kst 3.260870e-06   p_cons 9.945649e-01   p_joint 8.423913e-06

Joint ci ratio: 6.929615e-01	ci left: 5.708136e-06	ci right 1.192465e-05	k: 31	n:3690000
Cons ci ratio: 1.508379e-04	ci left: 9.944909e-01	ci right 9.946411e-01	k: 3669950	n:3690000
KS ci ratio: 1.087210e+00	ci left: 1.680374e-06	ci right 5.680639e-06	k: 12	n:3690000
C9orf150   3690000 perm   5358 sec   (689 perm/sec)   p_kst 3.252033e-06   p_cons 9.945664e-01   p_joint 8.401084e-06

Joint ci ratio: 6.929616e-01	ci left: 5.692708e-06	ci right 1.189242e-05	k: 31	n:3700000
Cons ci ratio: 1.505913e-04	ci left: 9.944941e-01	ci right 9.946441e-01	k: 3679907	n:3700000
KS ci ratio: 1.087210e+00	ci left: 1.675832e-06	ci right 5.665286e-06	k: 12	n:3700000
C9orf150   3700000 perm   5386 sec   (687 perm/sec)   p_kst 3.243243e-06   p_cons 9.945695e-01   p_joint 8.378378e-06

Joint ci ratio: 6.929616e-01	ci left: 5.677364e-06	ci right 1.186036e-05	k: 31	n:3710000
Cons ci ratio: 1.503870e-04	ci left: 9.944942e-01	ci right 9.946441e-01	k: 3689853	n:3710000
KS ci ratio: 1.087210e+00	ci left: 1.671315e-06	ci right 5.650016e-06	k: 12	n:3710000
C9orf150   3710000 perm   5413 sec   (685 perm/sec)   p_kst 3.234501e-06   p_cons 9.945695e-01   p_joint 8.355795e-06

Joint ci ratio: 6.929616e-01	ci left: 5.662102e-06	ci right 1.182848e-05	k: 31	n:3720000
Cons ci ratio: 1.502023e-04	ci left: 9.944931e-01	ci right 9.946427e-01	k: 3699794	n:3720000
KS ci ratio: 1.087210e+00	ci left: 1.666822e-06	ci right 5.634828e-06	k: 12	n:3720000
C9orf150   3720000 perm   5441 sec   (684 perm/sec)   p_kst 3.225806e-06   p_cons 9.945683e-01   p_joint 8.333333e-06

Joint ci ratio: 6.929616e-01	ci left: 5.646923e-06	ci right 1.179677e-05	k: 31	n:3730000
Cons ci ratio: 1.500108e-04	ci left: 9.944924e-01	ci right 9.946419e-01	k: 3709737	n:3730000
KS ci ratio: 1.087210e+00	ci left: 1.662354e-06	ci right 5.619721e-06	k: 12	n:3730000
C9orf150   3730000 perm   5469 sec   (682 perm/sec)   p_kst 3.217158e-06   p_cons 9.945676e-01   p_joint 8.310992e-06

Joint ci ratio: 6.929616e-01	ci left: 5.631824e-06	ci right 1.176523e-05	k: 31	n:3740000
Cons ci ratio: 1.498348e-04	ci left: 9.944908e-01	ci right 9.946400e-01	k: 3719676	n:3740000
KS ci ratio: 1.087210e+00	ci left: 1.657909e-06	ci right 5.604695e-06	k: 12	n:3740000
C9orf150   3740000 perm   5497 sec   (680 perm/sec)   p_kst 3.208556e-06   p_cons 9.945658e-01   p_joint 8.288770e-06

Joint ci ratio: 6.929616e-01	ci left: 5.616806e-06	ci right 1.173385e-05	k: 31	n:3750000
Cons ci ratio: 1.496669e-04	ci left: 9.944885e-01	ci right 9.946376e-01	k: 3729613	n:3750000
KS ci ratio: 1.087210e+00	ci left: 1.653488e-06	ci right 5.589749e-06	k: 12	n:3750000
C9orf150   3750000 perm   5525 sec   (679 perm/sec)   p_kst 3.200000e-06   p_cons 9.945635e-01   p_joint 8.266667e-06

Joint ci ratio: 6.929616e-01	ci left: 5.601867e-06	ci right 1.170265e-05	k: 31	n:3760000
Cons ci ratio: 1.494590e-04	ci left: 9.944893e-01	ci right 9.946382e-01	k: 3739561	n:3760000
KS ci ratio: 1.087210e+00	ci left: 1.649090e-06	ci right 5.574883e-06	k: 12	n:3760000
C9orf150   3760000 perm   5553 sec   (677 perm/sec)   p_kst 3.191489e-06   p_cons 9.945641e-01   p_joint 8.244681e-06

Joint ci ratio: 6.929616e-01	ci left: 5.587008e-06	ci right 1.167160e-05	k: 31	n:3770000
Cons ci ratio: 1.492703e-04	ci left: 9.944887e-01	ci right 9.946374e-01	k: 3749504	n:3770000
KS ci ratio: 1.087210e+00	ci left: 1.644716e-06	ci right 5.560096e-06	k: 12	n:3770000
C9orf150   3770000 perm   5582 sec   (675 perm/sec)   p_kst 3.183024e-06   p_cons 9.945634e-01   p_joint 8.222812e-06

Joint ci ratio: 6.929616e-01	ci left: 5.572228e-06	ci right 1.164073e-05	k: 31	n:3780000
Cons ci ratio: 1.490495e-04	ci left: 9.944905e-01	ci right 9.946389e-01	k: 3759456	n:3780000
KS ci ratio: 1.087210e+00	ci left: 1.640365e-06	ci right 5.545386e-06	k: 12	n:3780000
C9orf150   3780000 perm   5610 sec   (674 perm/sec)   p_kst 3.174603e-06   p_cons 9.945651e-01   p_joint 8.201058e-06

Joint ci ratio: 6.722713e-01	ci left: 5.993591e-06	ci right 1.222802e-05	k: 33	n:3790000
Cons ci ratio: 1.488732e-04	ci left: 9.944890e-01	ci right 9.946374e-01	k: 3769396	n:3790000
KS ci ratio: 1.087210e+00	ci left: 1.636037e-06	ci right 5.530755e-06	k: 12	n:3790000
C9orf150   3790000 perm   5638 sec   (672 perm/sec)   p_kst 3.166227e-06   p_cons 9.945636e-01   p_joint 8.707124e-06

Joint ci ratio: 6.722714e-01	ci left: 5.977818e-06	ci right 1.219584e-05	k: 33	n:3800000
Cons ci ratio: 1.486904e-04	ci left: 9.944882e-01	ci right 9.946363e-01	k: 3779338	n:3800000
KS ci ratio: 1.087210e+00	ci left: 1.631731e-06	ci right 5.516200e-06	k: 12	n:3800000
C9orf150   3800000 perm   5667 sec   (671 perm/sec)   p_kst 3.157895e-06   p_cons 9.945626e-01   p_joint 8.684211e-06

Joint ci ratio: 6.722714e-01	ci left: 5.962128e-06	ci right 1.216383e-05	k: 33	n:3810000
Cons ci ratio: 1.485370e-04	ci left: 9.944852e-01	ci right 9.946332e-01	k: 3789272	n:3810000
KS ci ratio: 1.087210e+00	ci left: 1.627449e-06	ci right 5.501722e-06	k: 12	n:3810000
C9orf150   3810000 perm   5695 sec   (669 perm/sec)   p_kst 3.149606e-06   p_cons 9.945596e-01   p_joint 8.661417e-06

Joint ci ratio: 6.722714e-01	ci left: 5.946521e-06	ci right 1.213199e-05	k: 33	n:3820000
Cons ci ratio: 1.483338e-04	ci left: 9.944859e-01	ci right 9.946337e-01	k: 3799220	n:3820000
KS ci ratio: 1.087210e+00	ci left: 1.623188e-06	ci right 5.487319e-06	k: 12	n:3820000
C9orf150   3820000 perm   5724 sec   (667 perm/sec)   p_kst 3.141361e-06   p_cons 9.945602e-01   p_joint 8.638743e-06

Joint ci ratio: 6.722714e-01	ci left: 5.930995e-06	ci right 1.210031e-05	k: 33	n:3830000
Cons ci ratio: 1.481422e-04	ci left: 9.944859e-01	ci right 9.946335e-01	k: 3809165	n:3830000
KS ci ratio: 1.087210e+00	ci left: 1.618950e-06	ci right 5.472992e-06	k: 12	n:3830000
C9orf150   3830000 perm   5752 sec   (666 perm/sec)   p_kst 3.133159e-06   p_cons 9.945601e-01   p_joint 8.616188e-06

Joint ci ratio: 6.625978e-01	ci left: 6.131775e-06	ci right 1.237279e-05	k: 34	n:3840000
Cons ci ratio: 1.479442e-04	ci left: 9.944863e-01	ci right 9.946337e-01	k: 3819112	n:3840000
KS ci ratio: 1.087210e+00	ci left: 1.614734e-06	ci right 5.458740e-06	k: 12	n:3840000
C9orf150   3840000 perm   5781 sec   (664 perm/sec)   p_kst 3.125000e-06   p_cons 9.945604e-01   p_joint 8.854167e-06

Joint ci ratio: 6.625978e-01	ci left: 6.115849e-06	ci right 1.234065e-05	k: 34	n:3850000
Cons ci ratio: 1.477470e-04	ci left: 9.944868e-01	ci right 9.946340e-01	k: 3829059	n:3850000
KS ci ratio: 1.087210e+00	ci left: 1.610540e-06	ci right 5.444561e-06	k: 12	n:3850000
C9orf150   3850000 perm   5810 sec   (663 perm/sec)   p_kst 3.116883e-06   p_cons 9.945608e-01   p_joint 8.831169e-06

Joint ci ratio: 6.929617e-01	ci left: 5.456741e-06	ci right 1.139947e-05	k: 31	n:3860000
Cons ci ratio: 1.475964e-04	ci left: 9.944839e-01	ci right 9.946309e-01	k: 3838993	n:3860000
KS ci ratio: 1.087210e+00	ci left: 1.606368e-06	ci right 5.430456e-06	k: 12	n:3860000
C9orf150   3860000 perm   5839 sec   (661 perm/sec)   p_kst 3.108808e-06   p_cons 9.945578e-01   p_joint 8.031088e-06

Joint ci ratio: 6.929617e-01	ci left: 5.442641e-06	ci right 1.137001e-05	k: 31	n:3870000
Cons ci ratio: 1.474006e-04	ci left: 9.944843e-01	ci right 9.946312e-01	k: 3848940	n:3870000
KS ci ratio: 1.087210e+00	ci left: 1.602217e-06	ci right 5.416424e-06	k: 12	n:3870000
C9orf150   3870000 perm   5868 sec   (659 perm/sec)   p_kst 3.100775e-06   p_cons 9.945581e-01   p_joint 8.010336e-06

Joint ci ratio: 6.929617e-01	ci left: 5.428613e-06	ci right 1.134071e-05	k: 31	n:3880000
Cons ci ratio: 1.472196e-04	ci left: 9.944838e-01	ci right 9.946304e-01	k: 3858883	n:3880000
KS ci ratio: 1.087210e+00	ci left: 1.598087e-06	ci right 5.402464e-06	k: 12	n:3880000
C9orf150   3880000 perm   5897 sec   (658 perm/sec)   p_kst 3.092784e-06   p_cons 9.945575e-01   p_joint 7.989691e-06

Joint ci ratio: 6.929617e-01	ci left: 5.414658e-06	ci right 1.131156e-05	k: 31	n:3890000
Cons ci ratio: 1.470462e-04	ci left: 9.944827e-01	ci right 9.946292e-01	k: 3868824	n:3890000
KS ci ratio: 1.087210e+00	ci left: 1.593979e-06	ci right 5.388576e-06	k: 12	n:3890000
C9orf150   3890000 perm   5926 sec   (656 perm/sec)   p_kst 3.084833e-06   p_cons 9.945563e-01   p_joint 7.969152e-06

Joint ci ratio: 6.929617e-01	ci left: 5.400774e-06	ci right 1.128255e-05	k: 31	n:3900000
Cons ci ratio: 1.468282e-04	ci left: 9.944850e-01	ci right 9.946312e-01	k: 3878778	n:3900000
KS ci ratio: 1.087210e+00	ci left: 1.589892e-06	ci right 5.374759e-06	k: 12	n:3900000
C9orf150   3900000 perm   5955 sec   (655 perm/sec)   p_kst 3.076923e-06   p_cons 9.945585e-01   p_joint 7.948718e-06

Joint ci ratio: 6.929617e-01	ci left: 5.386962e-06	ci right 1.125370e-05	k: 31	n:3910000
Cons ci ratio: 1.465904e-04	ci left: 9.944888e-01	ci right 9.946348e-01	k: 3888738	n:3910000
KS ci ratio: 1.087210e+00	ci left: 1.585826e-06	ci right 5.361013e-06	k: 12	n:3910000
C9orf150   3910000 perm   5985 sec   (653 perm/sec)   p_kst 3.069054e-06   p_cons 9.945621e-01   p_joint 7.928389e-06

Joint ci ratio: 6.929617e-01	ci left: 5.373219e-06	ci right 1.122499e-05	k: 31	n:3920000
Cons ci ratio: 1.464468e-04	ci left: 9.944856e-01	ci right 9.946315e-01	k: 3898671	n:3920000
KS ci ratio: 1.087210e+00	ci left: 1.581780e-06	ci right 5.347337e-06	k: 12	n:3920000
C9orf150   3920000 perm   6013 sec   (652 perm/sec)   p_kst 3.061224e-06   p_cons 9.945589e-01   p_joint 7.908163e-06

Joint ci ratio: 6.929617e-01	ci left: 5.359547e-06	ci right 1.119643e-05	k: 31	n:3930000
Cons ci ratio: 1.463037e-04	ci left: 9.944825e-01	ci right 9.946282e-01	k: 3908604	n:3930000
KS ci ratio: 1.087210e+00	ci left: 1.577755e-06	ci right 5.333731e-06	k: 12	n:3930000
C9orf150   3930000 perm   6043 sec   (650 perm/sec)   p_kst 3.053435e-06   p_cons 9.945557e-01   p_joint 7.888041e-06

Joint ci ratio: 6.929617e-01	ci left: 5.345944e-06	ci right 1.116801e-05	k: 31	n:3940000
Cons ci ratio: 1.461609e-04	ci left: 9.944794e-01	ci right 9.946250e-01	k: 3918537	n:3940000
KS ci ratio: 1.087210e+00	ci left: 1.573751e-06	ci right 5.320193e-06	k: 12	n:3940000
C9orf150   3940000 perm   6072 sec   (649 perm/sec)   p_kst 3.045685e-06   p_cons 9.945525e-01   p_joint 7.868020e-06

Joint ci ratio: 6.929618e-01	ci left: 5.332410e-06	ci right 1.113973e-05	k: 31	n:3950000
Cons ci ratio: 1.459877e-04	ci left: 9.944786e-01	ci right 9.946240e-01	k: 3928479	n:3950000
KS ci ratio: 1.087210e+00	ci left: 1.569767e-06	ci right 5.306724e-06	k: 12	n:3950000
C9orf150   3950000 perm   6102 sec   (647 perm/sec)   p_kst 3.037975e-06   p_cons 9.945516e-01   p_joint 7.848101e-06

Joint ci ratio: 6.823815e-01	ci left: 5.527273e-06	ci right 1.140767e-05	k: 32	n:3960000
Cons ci ratio: 1.458118e-04	ci left: 9.944780e-01	ci right 9.946233e-01	k: 3938422	n:3960000
KS ci ratio: 1.087210e+00	ci left: 1.565803e-06	ci right 5.293324e-06	k: 12	n:3960000
C9orf150   3960000 perm   6131 sec   (646 perm/sec)   p_kst 3.030303e-06   p_cons 9.945510e-01   p_joint 8.080808e-06

Joint ci ratio: 6.823815e-01	ci left: 5.513350e-06	ci right 1.137894e-05	k: 32	n:3970000
Cons ci ratio: 1.456129e-04	ci left: 9.944792e-01	ci right 9.946243e-01	k: 3948372	n:3970000
KS ci ratio: 1.087210e+00	ci left: 1.561859e-06	ci right 5.279990e-06	k: 12	n:3970000
C9orf150   3970000 perm   6160 sec   (645 perm/sec)   p_kst 3.022670e-06   p_cons 9.945521e-01   p_joint 8.060453e-06

Joint ci ratio: 6.823815e-01	ci left: 5.499498e-06	ci right 1.135035e-05	k: 32	n:3980000
Cons ci ratio: 1.454215e-04	ci left: 9.944800e-01	ci right 9.946248e-01	k: 3958320	n:3980000
KS ci ratio: 1.087210e+00	ci left: 1.557934e-06	ci right 5.266724e-06	k: 12	n:3980000
C9orf150   3980000 perm   6190 sec   (643 perm/sec)   p_kst 3.015075e-06   p_cons 9.945528e-01   p_joint 8.040201e-06

Joint ci ratio: 6.823815e-01	ci left: 5.485715e-06	ci right 1.132190e-05	k: 32	n:3990000
Cons ci ratio: 1.452342e-04	ci left: 9.944804e-01	ci right 9.946251e-01	k: 3968267	n:3990000
KS ci ratio: 1.087210e+00	ci left: 1.554030e-06	ci right 5.253524e-06	k: 12	n:3990000
C9orf150   3990000 perm   6220 sec   (642 perm/sec)   p_kst 3.007519e-06   p_cons 9.945531e-01   p_joint 8.020050e-06

Joint ci ratio: 6.823815e-01	ci left: 5.472000e-06	ci right 1.129359e-05	k: 32	n:4000000
Cons ci ratio: 1.450643e-04	ci left: 9.944796e-01	ci right 9.946242e-01	k: 3978209	n:4000000
KS ci ratio: 1.087210e+00	ci left: 1.550145e-06	ci right 5.240390e-06	k: 12	n:4000000
C9orf150   4000000 perm   6250 sec   (640 perm/sec)   p_kst 3.000000e-06   p_cons 9.945523e-01   p_joint 8.000000e-06

Joint ci ratio: 6.722715e-01	ci left: 5.664765e-06	ci right 1.155716e-05	k: 33	n:4010000
Cons ci ratio: 1.449017e-04	ci left: 9.944783e-01	ci right 9.946227e-01	k: 3988149	n:4010000
KS ci ratio: 1.087210e+00	ci left: 1.546279e-06	ci right 5.227322e-06	k: 12	n:4010000
C9orf150   4010000 perm   6279 sec   (639 perm/sec)   p_kst 2.992519e-06   p_cons 9.945509e-01   p_joint 8.229426e-06

Joint ci ratio: 6.722715e-01	ci left: 5.650674e-06	ci right 1.152841e-05	k: 33	n:4020000
Cons ci ratio: 1.447198e-04	ci left: 9.944786e-01	ci right 9.946227e-01	k: 3998095	n:4020000
KS ci ratio: 1.087210e+00	ci left: 1.542433e-06	ci right 5.214319e-06	k: 12	n:4020000
C9orf150   4020000 perm   6309 sec   (637 perm/sec)   p_kst 2.985075e-06   p_cons 9.945510e-01   p_joint 8.208955e-06

Joint ci ratio: 6.625980e-01	ci left: 5.842684e-06	ci right 1.178946e-05	k: 34	n:4030000
Cons ci ratio: 1.445418e-04	ci left: 9.944785e-01	ci right 9.946225e-01	k: 4008040	n:4030000
KS ci ratio: 1.047662e+00	ci left: 1.717607e-06	ci right 5.516221e-06	k: 13	n:4030000
C9orf150   4030000 perm   6339 sec   (636 perm/sec)   p_kst 3.225806e-06   p_cons 9.945509e-01   p_joint 8.436725e-06

Joint ci ratio: 6.625980e-01	ci left: 5.828222e-06	ci right 1.176028e-05	k: 34	n:4040000
Cons ci ratio: 1.443578e-04	ci left: 9.944790e-01	ci right 9.946228e-01	k: 4017987	n:4040000
KS ci ratio: 1.047662e+00	ci left: 1.713356e-06	ci right 5.502567e-06	k: 13	n:4040000
C9orf150   4040000 perm   6369 sec   (634 perm/sec)   p_kst 3.217822e-06   p_cons 9.945512e-01   p_joint 8.415842e-06

Joint ci ratio: 6.625980e-01	ci left: 5.813831e-06	ci right 1.173124e-05	k: 34	n:4050000
Cons ci ratio: 1.442173e-04	ci left: 9.944762e-01	ci right 9.946199e-01	k: 4027921	n:4050000
KS ci ratio: 1.047662e+00	ci left: 1.709125e-06	ci right 5.488980e-06	k: 13	n:4050000
C9orf150   4050000 perm   6399 sec   (633 perm/sec)   p_kst 3.209877e-06   p_cons 9.945484e-01   p_joint 8.395062e-06

Joint ci ratio: 6.625980e-01	ci left: 5.799511e-06	ci right 1.170234e-05	k: 34	n:4060000
Cons ci ratio: 1.440379e-04	ci left: 9.944764e-01	ci right 9.946199e-01	k: 4037867	n:4060000
KS ci ratio: 1.047662e+00	ci left: 1.704915e-06	ci right 5.475461e-06	k: 13	n:4060000
C9orf150   4060000 perm   6430 sec   (631 perm/sec)   p_kst 3.201970e-06   p_cons 9.945485e-01   p_joint 8.374384e-06

Joint ci ratio: 6.625980e-01	ci left: 5.785262e-06	ci right 1.167359e-05	k: 34	n:4070000
Cons ci ratio: 1.438461e-04	ci left: 9.944776e-01	ci right 9.946209e-01	k: 4047817	n:4070000
KS ci ratio: 1.047662e+00	ci left: 1.700726e-06	ci right 5.462008e-06	k: 13	n:4070000
C9orf150   4070000 perm   6460 sec   (630 perm/sec)   p_kst 3.194103e-06   p_cons 9.945496e-01   p_joint 8.353808e-06

Joint ci ratio: 6.625980e-01	ci left: 5.771082e-06	ci right 1.164498e-05	k: 34	n:4080000
Cons ci ratio: 1.436324e-04	ci left: 9.944806e-01	ci right 9.946236e-01	k: 4057774	n:4080000
KS ci ratio: 1.047662e+00	ci left: 1.696558e-06	ci right 5.448620e-06	k: 13	n:4080000
C9orf150   4080000 perm   6490 sec   (629 perm/sec)   p_kst 3.186275e-06   p_cons 9.945525e-01   p_joint 8.333333e-06

Joint ci ratio: 6.625980e-01	ci left: 5.756972e-06	ci right 1.161651e-05	k: 34	n:4090000
Cons ci ratio: 1.434551e-04	ci left: 9.944808e-01	ci right 9.946237e-01	k: 4067720	n:4090000
KS ci ratio: 1.047662e+00	ci left: 1.692410e-06	ci right 5.435298e-06	k: 13	n:4090000
C9orf150   4090000 perm   6521 sec   (627 perm/sec)   p_kst 3.178484e-06   p_cons 9.945526e-01   p_joint 8.312958e-06

Joint ci ratio: 6.625980e-01	ci left: 5.742931e-06	ci right 1.158817e-05	k: 34	n:4100000
Cons ci ratio: 1.433462e-04	ci left: 9.944758e-01	ci right 9.946186e-01	k: 4077645	n:4100000
KS ci ratio: 1.047662e+00	ci left: 1.688282e-06	ci right 5.422042e-06	k: 13	n:4100000
C9orf150   4100000 perm   6551 sec   (626 perm/sec)   p_kst 3.170732e-06   p_cons 9.945476e-01   p_joint 8.292683e-06

Joint ci ratio: 6.625980e-01	ci left: 5.728958e-06	ci right 1.155998e-05	k: 34	n:4110000
Cons ci ratio: 1.431572e-04	ci left: 9.944770e-01	ci right 9.946196e-01	k: 4087595	n:4110000
KS ci ratio: 1.047662e+00	ci left: 1.684174e-06	ci right 5.408849e-06	k: 13	n:4110000
C9orf150   4110000 perm   6582 sec   (624 perm/sec)   p_kst 3.163017e-06   p_cons 9.945487e-01   p_joint 8.272506e-06

Joint ci ratio: 6.625980e-01	ci left: 5.715052e-06	ci right 1.153192e-05	k: 34	n:4120000
Cons ci ratio: 1.429817e-04	ci left: 9.944772e-01	ci right 9.946197e-01	k: 4097541	n:4120000
KS ci ratio: 1.047662e+00	ci left: 1.680087e-06	ci right 5.395721e-06	k: 13	n:4120000
C9orf150   4120000 perm   6613 sec   (623 perm/sec)   p_kst 3.155340e-06   p_cons 9.945488e-01   p_joint 8.252427e-06

Joint ci ratio: 6.625980e-01	ci left: 5.701214e-06	ci right 1.150400e-05	k: 34	n:4130000
Cons ci ratio: 1.428515e-04	ci left: 9.944740e-01	ci right 9.946163e-01	k: 4107473	n:4130000
KS ci ratio: 1.047662e+00	ci left: 1.676019e-06	ci right 5.382656e-06	k: 13	n:4130000
C9orf150   4130000 perm   6644 sec   (622 perm/sec)   p_kst 3.147700e-06   p_cons 9.945455e-01   p_joint 8.232446e-06

Joint ci ratio: 6.625981e-01	ci left: 5.687443e-06	ci right 1.147621e-05	k: 34	n:4140000
Cons ci ratio: 1.427025e-04	ci left: 9.944723e-01	ci right 9.946145e-01	k: 4117411	n:4140000
KS ci ratio: 1.047662e+00	ci left: 1.671970e-06	ci right 5.369655e-06	k: 13	n:4140000
C9orf150   4140000 perm   6674 sec   (620 perm/sec)   p_kst 3.140097e-06   p_cons 9.945437e-01   p_joint 8.212560e-06

Joint ci ratio: 6.625981e-01	ci left: 5.673739e-06	ci right 1.144856e-05	k: 34	n:4150000
Cons ci ratio: 1.425445e-04	ci left: 9.944713e-01	ci right 9.946133e-01	k: 4127352	n:4150000
KS ci ratio: 1.047662e+00	ci left: 1.667941e-06	ci right 5.356716e-06	k: 13	n:4150000
C9orf150   4150000 perm   6706 sec   (619 perm/sec)   p_kst 3.132530e-06   p_cons 9.945427e-01   p_joint 8.192771e-06

Joint ci ratio: 6.625981e-01	ci left: 5.660100e-06	ci right 1.142104e-05	k: 34	n:4160000
Cons ci ratio: 1.423524e-04	ci left: 9.944730e-01	ci right 9.946148e-01	k: 4137304	n:4160000
KS ci ratio: 1.047662e+00	ci left: 1.663932e-06	ci right 5.343839e-06	k: 13	n:4160000
C9orf150   4160000 perm   6737 sec   (617 perm/sec)   p_kst 3.125000e-06   p_cons 9.945442e-01   p_joint 8.173077e-06

Joint ci ratio: 6.625981e-01	ci left: 5.646526e-06	ci right 1.139365e-05	k: 34	n:4170000
Cons ci ratio: 1.421955e-04	ci left: 9.944720e-01	ci right 9.946136e-01	k: 4147245	n:4170000
KS ci ratio: 1.047662e+00	ci left: 1.659942e-06	ci right 5.331024e-06	k: 13	n:4170000
C9orf150   4170000 perm   6768 sec   (616 perm/sec)   p_kst 3.117506e-06   p_cons 9.945432e-01   p_joint 8.153477e-06

Joint ci ratio: 6.625981e-01	ci left: 5.633018e-06	ci right 1.136639e-05	k: 34	n:4180000
Cons ci ratio: 1.420642e-04	ci left: 9.944691e-01	ci right 9.946106e-01	k: 4157178	n:4180000
KS ci ratio: 1.047662e+00	ci left: 1.655971e-06	ci right 5.318271e-06	k: 13	n:4180000
C9orf150   4180000 perm   6798 sec   (615 perm/sec)   p_kst 3.110048e-06   p_cons 9.945402e-01   p_joint 8.133971e-06

Joint ci ratio: 6.625981e-01	ci left: 5.619574e-06	ci right 1.133926e-05	k: 34	n:4190000
Cons ci ratio: 1.419177e-04	ci left: 9.944674e-01	ci right 9.946088e-01	k: 4167116	n:4190000
KS ci ratio: 1.047662e+00	ci left: 1.652018e-06	ci right 5.305578e-06	k: 13	n:4190000
C9orf150   4190000 perm   6830 sec   (614 perm/sec)   p_kst 3.102625e-06   p_cons 9.945384e-01   p_joint 8.114558e-06

Joint ci ratio: 6.625981e-01	ci left: 5.606194e-06	ci right 1.131227e-05	k: 34	n:4200000
Cons ci ratio: 1.417809e-04	ci left: 9.944650e-01	ci right 9.946062e-01	k: 4177051	n:4200000
KS ci ratio: 1.047662e+00	ci left: 1.648085e-06	ci right 5.292946e-06	k: 13	n:4200000
C9orf150   4200000 perm   6861 sec   (612 perm/sec)   p_kst 3.095238e-06   p_cons 9.945360e-01   p_joint 8.095238e-06

Joint ci ratio: 6.625981e-01	ci left: 5.592878e-06	ci right 1.128540e-05	k: 34	n:4210000
Cons ci ratio: 1.416475e-04	ci left: 9.944624e-01	ci right 9.946035e-01	k: 4186985	n:4210000
KS ci ratio: 1.047662e+00	ci left: 1.644170e-06	ci right 5.280373e-06	k: 13	n:4210000
C9orf150   4210000 perm   6893 sec   (611 perm/sec)   p_kst 3.087886e-06   p_cons 9.945333e-01   p_joint 8.076010e-06

Joint ci ratio: 6.625981e-01	ci left: 5.579624e-06	ci right 1.125865e-05	k: 34	n:4220000
Cons ci ratio: 1.414775e-04	ci left: 9.944626e-01	ci right 9.946035e-01	k: 4196931	n:4220000
KS ci ratio: 1.047662e+00	ci left: 1.640274e-06	ci right 5.267861e-06	k: 13	n:4220000
C9orf150   4220000 perm   6925 sec   (609 perm/sec)   p_kst 3.080569e-06   p_cons 9.945334e-01   p_joint 8.056872e-06

Joint ci ratio: 6.625981e-01	ci left: 5.566434e-06	ci right 1.123204e-05	k: 34	n:4230000
Cons ci ratio: 1.413082e-04	ci left: 9.944628e-01	ci right 9.946036e-01	k: 4206877	n:4230000
KS ci ratio: 1.047662e+00	ci left: 1.636396e-06	ci right 5.255407e-06	k: 13	n:4230000
C9orf150   4230000 perm   6956 sec   (608 perm/sec)   p_kst 3.073286e-06   p_cons 9.945336e-01   p_joint 8.037825e-06

Joint ci ratio: 6.625981e-01	ci left: 5.553305e-06	ci right 1.120555e-05	k: 34	n:4240000
Cons ci ratio: 1.411394e-04	ci left: 9.944631e-01	ci right 9.946037e-01	k: 4216823	n:4240000
KS ci ratio: 1.047662e+00	ci left: 1.632537e-06	ci right 5.243012e-06	k: 13	n:4240000
C9orf150   4240000 perm   6987 sec   (607 perm/sec)   p_kst 3.066038e-06   p_cons 9.945337e-01   p_joint 8.018868e-06

Joint ci ratio: 6.625981e-01	ci left: 5.540239e-06	ci right 1.117918e-05	k: 34	n:4250000
Cons ci ratio: 1.410261e-04	ci left: 9.944591e-01	ci right 9.945996e-01	k: 4226751	n:4250000
KS ci ratio: 1.047662e+00	ci left: 1.628696e-06	ci right 5.230676e-06	k: 13	n:4250000
C9orf150   4250000 perm   7019 sec   (606 perm/sec)   p_kst 3.058824e-06   p_cons 9.945296e-01   p_joint 8.000000e-06

Joint ci ratio: 6.929620e-01	ci left: 4.944370e-06	ci right 1.032910e-05	k: 31	n:4260000
Cons ci ratio: 1.408978e-04	ci left: 9.944562e-01	ci right 9.945966e-01	k: 4236684	n:4260000
KS ci ratio: 1.047662e+00	ci left: 1.624872e-06	ci right 5.218397e-06	k: 13	n:4260000
C9orf150   4260000 perm   7051 sec   (604 perm/sec)   p_kst 3.051643e-06   p_cons 9.945268e-01   p_joint 7.276995e-06

Joint ci ratio: 6.929620e-01	ci left: 4.932791e-06	ci right 1.030491e-05	k: 31	n:4270000
Cons ci ratio: 1.407366e-04	ci left: 9.944560e-01	ci right 9.945962e-01	k: 4246628	n:4270000
KS ci ratio: 1.047662e+00	ci left: 1.621067e-06	ci right 5.206176e-06	k: 13	n:4270000
C9orf150   4270000 perm   7083 sec   (603 perm/sec)   p_kst 3.044496e-06   p_cons 9.945265e-01   p_joint 7.259953e-06

Joint ci ratio: 6.929620e-01	ci left: 4.921266e-06	ci right 1.028083e-05	k: 31	n:4280000
Cons ci ratio: 1.405849e-04	ci left: 9.944551e-01	ci right 9.945952e-01	k: 4256569	n:4280000
KS ci ratio: 1.047662e+00	ci left: 1.617280e-06	ci right 5.194012e-06	k: 13	n:4280000
C9orf150   4280000 perm   7114 sec   (602 perm/sec)   p_kst 3.037383e-06   p_cons 9.945255e-01   p_joint 7.242991e-06

Joint ci ratio: 6.929620e-01	ci left: 4.909794e-06	ci right 1.025687e-05	k: 31	n:4290000
Cons ci ratio: 1.404188e-04	ci left: 9.944554e-01	ci right 9.945952e-01	k: 4266515	n:4290000
KS ci ratio: 1.047662e+00	ci left: 1.613510e-06	ci right 5.181905e-06	k: 13	n:4290000
C9orf150   4290000 perm   7146 sec   (600 perm/sec)   p_kst 3.030303e-06   p_cons 9.945256e-01   p_joint 7.226107e-06

Joint ci ratio: 6.929620e-01	ci left: 4.898376e-06	ci right 1.023301e-05	k: 31	n:4300000
Cons ci ratio: 1.402322e-04	ci left: 9.944573e-01	ci right 9.945970e-01	k: 4276468	n:4300000
KS ci ratio: 1.047662e+00	ci left: 1.609757e-06	ci right 5.169854e-06	k: 13	n:4300000
C9orf150   4300000 perm   7177 sec   (599 perm/sec)   p_kst 3.023256e-06   p_cons 9.945274e-01   p_joint 7.209302e-06

Joint ci ratio: 6.929620e-01	ci left: 4.887011e-06	ci right 1.020927e-05	k: 31	n:4310000
Cons ci ratio: 1.400523e-04	ci left: 9.944587e-01	ci right 9.945982e-01	k: 4286419	n:4310000
KS ci ratio: 1.047662e+00	ci left: 1.606022e-06	ci right 5.157859e-06	k: 13	n:4310000
C9orf150   4310000 perm   7209 sec   (598 perm/sec)   p_kst 3.016241e-06   p_cons 9.945288e-01   p_joint 7.192575e-06

Joint ci ratio: 6.823817e-01	ci left: 5.066667e-06	ci right 1.045703e-05	k: 32	n:4320000
Cons ci ratio: 1.398552e-04	ci left: 9.944615e-01	ci right 9.946008e-01	k: 4296376	n:4320000
KS ci ratio: 1.012138e+00	ci left: 1.771744e-06	ci right 5.437406e-06	k: 14	n:4320000
C9orf150   4320000 perm   7241 sec   (597 perm/sec)   p_kst 3.240741e-06   p_cons 9.945315e-01   p_joint 7.407407e-06

Joint ci ratio: 6.823817e-01	ci left: 5.054965e-06	ci right 1.043288e-05	k: 32	n:4330000
Cons ci ratio: 1.396620e-04	ci left: 9.944641e-01	ci right 9.946032e-01	k: 4306332	n:4330000
KS ci ratio: 1.012138e+00	ci left: 1.767652e-06	ci right 5.424849e-06	k: 14	n:4330000
C9orf150   4330000 perm   7273 sec   (595 perm/sec)   p_kst 3.233256e-06   p_cons 9.945339e-01   p_joint 7.390300e-06

Joint ci ratio: 6.823817e-01	ci left: 5.043318e-06	ci right 1.040884e-05	k: 32	n:4340000
Cons ci ratio: 1.394665e-04	ci left: 9.944668e-01	ci right 9.946058e-01	k: 4316289	n:4340000
KS ci ratio: 1.012138e+00	ci left: 1.763579e-06	ci right 5.412349e-06	k: 14	n:4340000
C9orf150   4340000 perm   7304 sec   (594 perm/sec)   p_kst 3.225806e-06   p_cons 9.945366e-01   p_joint 7.373272e-06

Joint ci ratio: 6.722717e-01	ci left: 5.222001e-06	ci right 1.065384e-05	k: 33	n:4350000
Cons ci ratio: 1.392983e-04	ci left: 9.944675e-01	ci right 9.946063e-01	k: 4326237	n:4350000
KS ci ratio: 9.799981e-01	ci left: 1.929975e-06	ci right 5.687400e-06	k: 15	n:4350000
C9orf150   4350000 perm   7336 sec   (593 perm/sec)   p_kst 3.448276e-06   p_cons 9.945372e-01   p_joint 7.586207e-06

Joint ci ratio: 6.625982e-01	ci left: 5.400462e-06	ci right 1.089714e-05	k: 34	n:4360000
Cons ci ratio: 1.391249e-04	ci left: 9.944687e-01	ci right 9.946073e-01	k: 4336187	n:4360000
KS ci ratio: 9.799981e-01	ci left: 1.925549e-06	ci right 5.674356e-06	k: 15	n:4360000
C9orf150   4360000 perm   7368 sec   (592 perm/sec)   p_kst 3.440367e-06   p_cons 9.945383e-01   p_joint 7.798165e-06

Joint ci ratio: 6.625982e-01	ci left: 5.388104e-06	ci right 1.087220e-05	k: 34	n:4370000
Cons ci ratio: 1.390282e-04	ci left: 9.944638e-01	ci right 9.946023e-01	k: 4346111	n:4370000
KS ci ratio: 9.799981e-01	ci left: 1.921142e-06	ci right 5.661371e-06	k: 15	n:4370000
C9orf150   4370000 perm   7400 sec   (591 perm/sec)   p_kst 3.432494e-06   p_cons 9.945334e-01   p_joint 7.780320e-06

Joint ci ratio: 6.625982e-01	ci left: 5.375802e-06	ci right 1.084738e-05	k: 34	n:4380000
Cons ci ratio: 1.388208e-04	ci left: 9.944677e-01	ci right 9.946060e-01	k: 4356073	n:4380000
KS ci ratio: 9.799981e-01	ci left: 1.916756e-06	ci right 5.648446e-06	k: 15	n:4380000
C9orf150   4380000 perm   7433 sec   (589 perm/sec)   p_kst 3.424658e-06   p_cons 9.945372e-01   p_joint 7.762557e-06

Joint ci ratio: 6.533306e-01	ci left: 5.553259e-06	ci right 1.108803e-05	k: 35	n:4390000
Cons ci ratio: 1.386695e-04	ci left: 9.944673e-01	ci right 9.946054e-01	k: 4366016	n:4390000
KS ci ratio: 9.799981e-01	ci left: 1.912390e-06	ci right 5.635579e-06	k: 15	n:4390000
C9orf150   4390000 perm   7464 sec   (588 perm/sec)   p_kst 3.416856e-06   p_cons 9.945367e-01   p_joint 7.972665e-06

Joint ci ratio: 6.533306e-01	ci left: 5.540638e-06	ci right 1.106283e-05	k: 35	n:4400000
Cons ci ratio: 1.385070e-04	ci left: 9.944677e-01	ci right 9.946057e-01	k: 4375963	n:4400000
KS ci ratio: 9.799981e-01	ci left: 1.908044e-06	ci right 5.622771e-06	k: 15	n:4400000
C9orf150   4400000 perm   7497 sec   (587 perm/sec)   p_kst 3.409091e-06   p_cons 9.945370e-01   p_joint 7.954545e-06

Joint ci ratio: 6.533306e-01	ci left: 5.528075e-06	ci right 1.103774e-05	k: 35	n:4410000
Cons ci ratio: 1.383423e-04	ci left: 9.944684e-01	ci right 9.946062e-01	k: 4385911	n:4410000
KS ci ratio: 9.799981e-01	ci left: 1.903717e-06	ci right 5.610021e-06	k: 15	n:4410000
C9orf150   4410000 perm   7529 sec   (586 perm/sec)   p_kst 3.401361e-06   p_cons 9.945376e-01   p_joint 7.936508e-06

Joint ci ratio: 6.533306e-01	ci left: 5.515568e-06	ci right 1.101277e-05	k: 35	n:4420000
Cons ci ratio: 1.382156e-04	ci left: 9.944661e-01	ci right 9.946038e-01	k: 4395846	n:4420000
KS ci ratio: 9.799981e-01	ci left: 1.899410e-06	ci right 5.597328e-06	k: 15	n:4420000
C9orf150   4420000 perm   7562 sec   (585 perm/sec)   p_kst 3.393665e-06   p_cons 9.945353e-01   p_joint 7.918552e-06

Joint ci ratio: 6.444413e-01	ci left: 5.691645e-06	ci right 1.125036e-05	k: 36	n:4430000
Cons ci ratio: 1.380777e-04	ci left: 9.944648e-01	ci right 9.946023e-01	k: 4405785	n:4430000
KS ci ratio: 9.799981e-01	ci left: 1.895122e-06	ci right 5.584693e-06	k: 15	n:4430000
C9orf150   4430000 perm   7595 sec   (583 perm/sec)   p_kst 3.386005e-06   p_cons 9.945339e-01   p_joint 8.126411e-06

Joint ci ratio: 6.444413e-01	ci left: 5.678825e-06	ci right 1.122502e-05	k: 36	n:4440000
Cons ci ratio: 1.379317e-04	ci left: 9.944641e-01	ci right 9.946015e-01	k: 4415727	n:4440000
KS ci ratio: 9.799981e-01	ci left: 1.890854e-06	ci right 5.572115e-06	k: 15	n:4440000
C9orf150   4440000 perm   7628 sec   (582 perm/sec)   p_kst 3.378378e-06   p_cons 9.945331e-01   p_joint 8.108108e-06

Joint ci ratio: 6.444413e-01	ci left: 5.666064e-06	ci right 1.119980e-05	k: 36	n:4450000
Cons ci ratio: 1.378060e-04	ci left: 9.944618e-01	ci right 9.945991e-01	k: 4425662	n:4450000
KS ci ratio: 9.799981e-01	ci left: 1.886605e-06	ci right 5.559594e-06	k: 15	n:4450000
C9orf150   4450000 perm   7661 sec   (581 perm/sec)   p_kst 3.370787e-06   p_cons 9.945308e-01   p_joint 8.089888e-06

Joint ci ratio: 6.444413e-01	ci left: 5.653360e-06	ci right 1.117469e-05	k: 36	n:4460000
Cons ci ratio: 1.376466e-04	ci left: 9.944623e-01	ci right 9.945994e-01	k: 4435609	n:4460000
KS ci ratio: 9.799981e-01	ci left: 1.882375e-06	ci right 5.547128e-06	k: 15	n:4460000
C9orf150   4460000 perm   7693 sec   (580 perm/sec)   p_kst 3.363229e-06   p_cons 9.945312e-01   p_joint 8.071749e-06

Joint ci ratio: 6.444413e-01	ci left: 5.640713e-06	ci right 1.114969e-05	k: 36	n:4470000
Cons ci ratio: 1.375076e-04	ci left: 9.944612e-01	ci right 9.945981e-01	k: 4445549	n:4470000
KS ci ratio: 9.799981e-01	ci left: 1.878164e-06	ci right 5.534719e-06	k: 15	n:4470000
C9orf150   4470000 perm   7727 sec   (578 perm/sec)   p_kst 3.355705e-06   p_cons 9.945300e-01   p_joint 8.053691e-06

Joint ci ratio: 6.444413e-01	ci left: 5.628122e-06	ci right 1.112480e-05	k: 36	n:4480000
Cons ci ratio: 1.373379e-04	ci left: 9.944625e-01	ci right 9.945993e-01	k: 4455500	n:4480000
KS ci ratio: 9.799981e-01	ci left: 1.873971e-06	ci right 5.522364e-06	k: 15	n:4480000
C9orf150   4480000 perm   7760 sec   (577 perm/sec)   p_kst 3.348214e-06   p_cons 9.945312e-01   p_joint 8.035714e-06

Joint ci ratio: 6.444413e-01	ci left: 5.615587e-06	ci right 1.110002e-05	k: 36	n:4490000
Cons ci ratio: 1.371633e-04	ci left: 9.944643e-01	ci right 9.946010e-01	k: 4465453	n:4490000
KS ci ratio: 9.799981e-01	ci left: 1.869798e-06	ci right 5.510065e-06	k: 15	n:4490000
C9orf150   4490000 perm   7794 sec   (576 perm/sec)   p_kst 3.340757e-06   p_cons 9.945330e-01   p_joint 8.017817e-06

Joint ci ratio: 6.444413e-01	ci left: 5.603108e-06	ci right 1.107536e-05	k: 36	n:4500000
Cons ci ratio: 1.369922e-04	ci left: 9.944659e-01	ci right 9.946024e-01	k: 4475405	n:4500000
KS ci ratio: 9.799981e-01	ci left: 1.865643e-06	ci right 5.497820e-06	k: 15	n:4500000
C9orf150   4500000 perm   7827 sec   (575 perm/sec)   p_kst 3.333333e-06   p_cons 9.945344e-01   p_joint 8.000000e-06

Joint ci ratio: 6.444413e-01	ci left: 5.590684e-06	ci right 1.105080e-05	k: 36	n:4510000
Cons ci ratio: 1.368551e-04	ci left: 9.944648e-01	ci right 9.946011e-01	k: 4485345	n:4510000
KS ci ratio: 9.799982e-01	ci left: 1.861506e-06	ci right 5.485630e-06	k: 15	n:4510000
C9orf150   4510000 perm   7861 sec   (574 perm/sec)   p_kst 3.325942e-06   p_cons 9.945333e-01   p_joint 7.982262e-06

Joint ci ratio: 6.444413e-01	ci left: 5.578315e-06	ci right 1.102635e-05	k: 36	n:4520000
Cons ci ratio: 1.367101e-04	ci left: 9.944643e-01	ci right 9.946005e-01	k: 4495288	n:4520000
KS ci ratio: 9.799982e-01	ci left: 1.857387e-06	ci right 5.473494e-06	k: 15	n:4520000
C9orf150   4520000 perm   7894 sec   (573 perm/sec)   p_kst 3.318584e-06   p_cons 9.945327e-01   p_joint 7.964602e-06

Joint ci ratio: 6.444413e-01	ci left: 5.566001e-06	ci right 1.100201e-05	k: 36	n:4530000
Cons ci ratio: 1.365573e-04	ci left: 9.944646e-01	ci right 9.946006e-01	k: 4505234	n:4530000
KS ci ratio: 9.799982e-01	ci left: 1.853287e-06	ci right 5.461411e-06	k: 15	n:4530000
C9orf150   4530000 perm   7928 sec   (571 perm/sec)   p_kst 3.311258e-06   p_cons 9.945329e-01   p_joint 7.947020e-06

Joint ci ratio: 6.444413e-01	ci left: 5.553741e-06	ci right 1.097778e-05	k: 36	n:4540000
Cons ci ratio: 1.363801e-04	ci left: 9.944668e-01	ci right 9.946026e-01	k: 4515189	n:4540000
KS ci ratio: 9.799982e-01	ci left: 1.849205e-06	ci right 5.449382e-06	k: 15	n:4540000
C9orf150   4540000 perm   7962 sec   (570 perm/sec)   p_kst 3.303965e-06   p_cons 9.945350e-01   p_joint 7.929515e-06

Joint ci ratio: 6.444413e-01	ci left: 5.541535e-06	ci right 1.095365e-05	k: 36	n:4550000
Cons ci ratio: 1.362338e-04	ci left: 9.944666e-01	ci right 9.946023e-01	k: 4525133	n:4550000
KS ci ratio: 9.799982e-01	ci left: 1.845141e-06	ci right 5.437405e-06	k: 15	n:4550000
C9orf150   4550000 perm   7996 sec   (569 perm/sec)   p_kst 3.296703e-06   p_cons 9.945347e-01   p_joint 7.912088e-06

Joint ci ratio: 6.444413e-01	ci left: 5.529383e-06	ci right 1.092963e-05	k: 36	n:4560000
Cons ci ratio: 1.360853e-04	ci left: 9.944666e-01	ci right 9.946021e-01	k: 4535078	n:4560000
KS ci ratio: 9.799982e-01	ci left: 1.841095e-06	ci right 5.425481e-06	k: 15	n:4560000
C9orf150   4560000 perm   8030 sec   (568 perm/sec)   p_kst 3.289474e-06   p_cons 9.945346e-01   p_joint 7.894737e-06

Joint ci ratio: 6.444414e-01	ci left: 5.517283e-06	ci right 1.090571e-05	k: 36	n:4570000
Cons ci ratio: 1.359400e-04	ci left: 9.944663e-01	ci right 9.946017e-01	k: 4545022	n:4570000
KS ci ratio: 9.799982e-01	ci left: 1.837066e-06	ci right 5.413609e-06	k: 15	n:4570000
C9orf150   4570000 perm   8064 sec   (567 perm/sec)   p_kst 3.282276e-06   p_cons 9.945344e-01   p_joint 7.877462e-06

Joint ci ratio: 6.444414e-01	ci left: 5.505237e-06	ci right 1.088190e-05	k: 36	n:4580000
Cons ci ratio: 1.357652e-04	ci left: 9.944685e-01	ci right 9.946038e-01	k: 4554977	n:4580000
KS ci ratio: 9.799982e-01	ci left: 1.833055e-06	ci right 5.401789e-06	k: 15	n:4580000
C9orf150   4580000 perm   8097 sec   (566 perm/sec)   p_kst 3.275109e-06   p_cons 9.945365e-01   p_joint 7.860262e-06

Joint ci ratio: 6.444414e-01	ci left: 5.493243e-06	ci right 1.085819e-05	k: 36	n:4590000
Cons ci ratio: 1.356182e-04	ci left: 9.944685e-01	ci right 9.946036e-01	k: 4564922	n:4590000
KS ci ratio: 9.799982e-01	ci left: 1.829061e-06	ci right 5.390020e-06	k: 15	n:4590000
C9orf150   4590000 perm   8132 sec   (564 perm/sec)   p_kst 3.267974e-06   p_cons 9.945364e-01   p_joint 7.843137e-06

Joint ci ratio: 6.444414e-01	ci left: 5.481301e-06	ci right 1.083459e-05	k: 36	n:4600000
Cons ci ratio: 1.354636e-04	ci left: 9.944692e-01	ci right 9.946041e-01	k: 4574870	n:4600000
KS ci ratio: 9.799982e-01	ci left: 1.825085e-06	ci right 5.378303e-06	k: 15	n:4600000
C9orf150   4600000 perm   8165 sec   (563 perm/sec)   p_kst 3.260870e-06   p_cons 9.945370e-01   p_joint 7.826087e-06

Joint ci ratio: 6.444414e-01	ci left: 5.469411e-06	ci right 1.081108e-05	k: 36	n:4610000
Cons ci ratio: 1.353283e-04	ci left: 9.944683e-01	ci right 9.946031e-01	k: 4584811	n:4610000
KS ci ratio: 9.799982e-01	ci left: 1.821126e-06	ci right 5.366636e-06	k: 15	n:4610000
C9orf150   4610000 perm   8199 sec   (562 perm/sec)   p_kst 3.253796e-06   p_cons 9.945360e-01   p_joint 7.809111e-06

Joint ci ratio: 6.444414e-01	ci left: 5.457572e-06	ci right 1.078768e-05	k: 36	n:4620000
Cons ci ratio: 1.352151e-04	ci left: 9.944657e-01	ci right 9.946004e-01	k: 4594744	n:4620000
KS ci ratio: 9.799982e-01	ci left: 1.817184e-06	ci right 5.355020e-06	k: 15	n:4620000
C9orf150   4620000 perm   8234 sec   (561 perm/sec)   p_kst 3.246753e-06   p_cons 9.945333e-01   p_joint 7.792208e-06

Joint ci ratio: 6.444414e-01	ci left: 5.445785e-06	ci right 1.076438e-05	k: 36	n:4630000
Cons ci ratio: 1.350994e-04	ci left: 9.944633e-01	ci right 9.945979e-01	k: 4604678	n:4630000
KS ci ratio: 9.799982e-01	ci left: 1.813259e-06	ci right 5.343454e-06	k: 15	n:4630000
C9orf150   4630000 perm   8268 sec   (560 perm/sec)   p_kst 3.239741e-06   p_cons 9.945309e-01   p_joint 7.775378e-06

Joint ci ratio: 6.444414e-01	ci left: 5.434048e-06	ci right 1.074119e-05	k: 36	n:4640000
Cons ci ratio: 1.349358e-04	ci left: 9.944648e-01	ci right 9.945992e-01	k: 4614630	n:4640000
KS ci ratio: 9.799982e-01	ci left: 1.809352e-06	ci right 5.331938e-06	k: 15	n:4640000
C9orf150   4640000 perm   8303 sec   (559 perm/sec)   p_kst 3.232759e-06   p_cons 9.945323e-01   p_joint 7.758621e-06

Joint ci ratio: 6.444414e-01	ci left: 5.422362e-06	ci right 1.071809e-05	k: 36	n:4650000
Cons ci ratio: 1.347622e-04	ci left: 9.944672e-01	ci right 9.946014e-01	k: 4624586	n:4650000
KS ci ratio: 9.799982e-01	ci left: 1.805460e-06	ci right 5.320472e-06	k: 15	n:4650000
C9orf150   4650000 perm   8337 sec   (558 perm/sec)   p_kst 3.225806e-06   p_cons 9.945346e-01   p_joint 7.741935e-06

Joint ci ratio: 6.444414e-01	ci left: 5.410726e-06	ci right 1.069509e-05	k: 36	n:4660000
Cons ci ratio: 1.346344e-04	ci left: 9.944659e-01	ci right 9.946000e-01	k: 4634525	n:4660000
KS ci ratio: 9.799982e-01	ci left: 1.801586e-06	ci right 5.309054e-06	k: 15	n:4660000
C9orf150   4660000 perm   8371 sec   (557 perm/sec)   p_kst 3.218884e-06   p_cons 9.945333e-01   p_joint 7.725322e-06

Joint ci ratio: 6.444414e-01	ci left: 5.399140e-06	ci right 1.067218e-05	k: 36	n:4670000
Cons ci ratio: 1.344990e-04	ci left: 9.944653e-01	ci right 9.945992e-01	k: 4644467	n:4670000
KS ci ratio: 9.799982e-01	ci left: 1.797728e-06	ci right 5.297686e-06	k: 15	n:4670000
C9orf150   4670000 perm   8405 sec   (556 perm/sec)   p_kst 3.211991e-06   p_cons 9.945325e-01   p_joint 7.708779e-06

Joint ci ratio: 6.444414e-01	ci left: 5.387603e-06	ci right 1.064938e-05	k: 36	n:4680000
Cons ci ratio: 1.343428e-04	ci left: 9.944663e-01	ci right 9.946001e-01	k: 4654417	n:4680000
KS ci ratio: 9.799982e-01	ci left: 1.793887e-06	ci right 5.286366e-06	k: 15	n:4680000
C9orf150   4680000 perm   8440 sec   (555 perm/sec)   p_kst 3.205128e-06   p_cons 9.945335e-01   p_joint 7.692308e-06

Joint ci ratio: 6.444414e-01	ci left: 5.376116e-06	ci right 1.062667e-05	k: 36	n:4690000
Cons ci ratio: 1.342004e-04	ci left: 9.944663e-01	ci right 9.946000e-01	k: 4664362	n:4690000
KS ci ratio: 9.799982e-01	ci left: 1.790062e-06	ci right 5.275094e-06	k: 15	n:4690000
C9orf150   4690000 perm   8474 sec   (553 perm/sec)   p_kst 3.198294e-06   p_cons 9.945335e-01   p_joint 7.675906e-06

Joint ci ratio: 6.444414e-01	ci left: 5.364677e-06	ci right 1.060406e-05	k: 36	n:4700000
Cons ci ratio: 1.340794e-04	ci left: 9.944646e-01	ci right 9.945982e-01	k: 4674299	n:4700000
KS ci ratio: 9.799982e-01	ci left: 1.786253e-06	ci right 5.263871e-06	k: 15	n:4700000
C9orf150   4700000 perm   8508 sec   (552 perm/sec)   p_kst 3.191489e-06   p_cons 9.945317e-01   p_joint 7.659574e-06

Joint ci ratio: 6.444414e-01	ci left: 5.353287e-06	ci right 1.058155e-05	k: 36	n:4710000
Cons ci ratio: 1.339378e-04	ci left: 9.944646e-01	ci right 9.945980e-01	k: 4684244	n:4710000
KS ci ratio: 9.799982e-01	ci left: 1.782461e-06	ci right 5.252695e-06	k: 15	n:4710000
C9orf150   4710000 perm   8543 sec   (551 perm/sec)   p_kst 3.184713e-06   p_cons 9.945316e-01   p_joint 7.643312e-06

Joint ci ratio: 6.444414e-01	ci left: 5.341946e-06	ci right 1.055913e-05	k: 36	n:4720000
Cons ci ratio: 1.337811e-04	ci left: 9.944659e-01	ci right 9.945992e-01	k: 4694195	n:4720000
KS ci ratio: 9.799982e-01	ci left: 1.778685e-06	ci right 5.241566e-06	k: 15	n:4720000
C9orf150   4720000 perm   8578 sec   (550 perm/sec)   p_kst 3.177966e-06   p_cons 9.945328e-01   p_joint 7.627119e-06

Joint ci ratio: 6.444414e-01	ci left: 5.330652e-06	ci right 1.053681e-05	k: 36	n:4730000
Cons ci ratio: 1.336508e-04	ci left: 9.944651e-01	ci right 9.945982e-01	k: 4704136	n:4730000
KS ci ratio: 9.799982e-01	ci left: 1.774924e-06	ci right 5.230485e-06	k: 15	n:4730000
C9orf150   4730000 perm   8613 sec   (549 perm/sec)   p_kst 3.171247e-06   p_cons 9.945319e-01   p_joint 7.610994e-06

Joint ci ratio: 6.444414e-01	ci left: 5.319406e-06	ci right 1.051458e-05	k: 36	n:4740000
Cons ci ratio: 1.335209e-04	ci left: 9.944642e-01	ci right 9.945972e-01	k: 4714077	n:4740000
KS ci ratio: 9.799982e-01	ci left: 1.771180e-06	ci right 5.219450e-06	k: 15	n:4740000
C9orf150   4740000 perm   8648 sec   (548 perm/sec)   p_kst 3.164557e-06   p_cons 9.945310e-01   p_joint 7.594937e-06

Joint ci ratio: 6.444415e-01	ci left: 5.308207e-06	ci right 1.049244e-05	k: 36	n:4750000
Cons ci ratio: 1.333682e-04	ci left: 9.944653e-01	ci right 9.945981e-01	k: 4724027	n:4750000
KS ci ratio: 9.799982e-01	ci left: 1.767451e-06	ci right 5.208462e-06	k: 15	n:4750000
C9orf150   4750000 perm   8683 sec   (547 perm/sec)   p_kst 3.157895e-06   p_cons 9.945320e-01   p_joint 7.578947e-06

Joint ci ratio: 6.444415e-01	ci left: 5.297055e-06	ci right 1.047040e-05	k: 36	n:4760000
Cons ci ratio: 1.332160e-04	ci left: 9.944663e-01	ci right 9.945990e-01	k: 4733977	n:4760000
KS ci ratio: 9.799982e-01	ci left: 1.763738e-06	ci right 5.197520e-06	k: 15	n:4760000
C9orf150   4760000 perm   8718 sec   (546 perm/sec)   p_kst 3.151261e-06   p_cons 9.945330e-01   p_joint 7.563025e-06

Joint ci ratio: 6.444415e-01	ci left: 5.285950e-06	ci right 1.044845e-05	k: 36	n:4770000
Cons ci ratio: 1.330899e-04	ci left: 9.944653e-01	ci right 9.945978e-01	k: 4743917	n:4770000
KS ci ratio: 9.799983e-01	ci left: 1.760040e-06	ci right 5.186623e-06	k: 15	n:4770000
C9orf150   4770000 perm   8753 sec   (545 perm/sec)   p_kst 3.144654e-06   p_cons 9.945319e-01   p_joint 7.547170e-06

Joint ci ratio: 6.444415e-01	ci left: 5.274892e-06	ci right 1.042659e-05	k: 36	n:4780000
Cons ci ratio: 1.329591e-04	ci left: 9.944647e-01	ci right 9.945971e-01	k: 4753859	n:4780000
KS ci ratio: 9.799983e-01	ci left: 1.756358e-06	ci right 5.175773e-06	k: 15	n:4780000
C9orf150   4780000 perm   8787 sec   (544 perm/sec)   p_kst 3.138075e-06   p_cons 9.945312e-01   p_joint 7.531381e-06

Joint ci ratio: 6.444415e-01	ci left: 5.263880e-06	ci right 1.040482e-05	k: 36	n:4790000
Cons ci ratio: 1.328032e-04	ci left: 9.944661e-01	ci right 9.945984e-01	k: 4763811	n:4790000
KS ci ratio: 9.799983e-01	ci left: 1.752691e-06	ci right 5.164967e-06	k: 15	n:4790000
C9orf150   4790000 perm   8823 sec   (543 perm/sec)   p_kst 3.131524e-06   p_cons 9.945326e-01   p_joint 7.515658e-06

Joint ci ratio: 6.444415e-01	ci left: 5.252913e-06	ci right 1.038315e-05	k: 36	n:4800000
Cons ci ratio: 1.326707e-04	ci left: 9.944657e-01	ci right 9.945979e-01	k: 4773754	n:4800000
KS ci ratio: 9.799983e-01	ci left: 1.749040e-06	ci right 5.154207e-06	k: 15	n:4800000
C9orf150   4800000 perm   8859 sec   (542 perm/sec)   p_kst 3.125000e-06   p_cons 9.945321e-01   p_joint 7.500000e-06

Joint ci ratio: 6.359054e-01	ci left: 5.416100e-06	ci right 1.060282e-05	k: 37	n:4810000
Cons ci ratio: 1.325614e-04	ci left: 9.944634e-01	ci right 9.945955e-01	k: 4783688	n:4810000
KS ci ratio: 9.507379e-01	ci left: 1.901328e-06	ci right 5.401865e-06	k: 16	n:4810000
C9orf150   4810000 perm   8894 sec   (541 perm/sec)   p_kst 3.326403e-06   p_cons 9.945297e-01   p_joint 7.692308e-06

Joint ci ratio: 6.359054e-01	ci left: 5.404863e-06	ci right 1.058082e-05	k: 37	n:4820000
Cons ci ratio: 1.324397e-04	ci left: 9.944622e-01	ci right 9.945941e-01	k: 4793627	n:4820000
KS ci ratio: 9.507379e-01	ci left: 1.897383e-06	ci right 5.390658e-06	k: 16	n:4820000
C9orf150   4820000 perm   8928 sec   (540 perm/sec)   p_kst 3.319502e-06   p_cons 9.945284e-01   p_joint 7.676349e-06

Joint ci ratio: 6.359054e-01	ci left: 5.393673e-06	ci right 1.055891e-05	k: 37	n:4830000
Cons ci ratio: 1.323083e-04	ci left: 9.944618e-01	ci right 9.945935e-01	k: 4803570	n:4830000
KS ci ratio: 9.507379e-01	ci left: 1.893455e-06	ci right 5.379497e-06	k: 16	n:4830000
C9orf150   4830000 perm   8964 sec   (539 perm/sec)   p_kst 3.312629e-06   p_cons 9.945280e-01   p_joint 7.660455e-06

Joint ci ratio: 6.359054e-01	ci left: 5.382529e-06	ci right 1.053710e-05	k: 37	n:4840000
Cons ci ratio: 1.321747e-04	ci left: 9.944616e-01	ci right 9.945932e-01	k: 4813514	n:4840000
KS ci ratio: 9.507379e-01	ci left: 1.889543e-06	ci right 5.368382e-06	k: 16	n:4840000
C9orf150   4840000 perm   8999 sec   (538 perm/sec)   p_kst 3.305785e-06   p_cons 9.945277e-01   p_joint 7.644628e-06

Joint ci ratio: 6.359054e-01	ci left: 5.371431e-06	ci right 1.051537e-05	k: 37	n:4850000
Cons ci ratio: 1.320216e-04	ci left: 9.944630e-01	ci right 9.945945e-01	k: 4823466	n:4850000
KS ci ratio: 9.507379e-01	ci left: 1.885647e-06	ci right 5.357314e-06	k: 16	n:4850000
C9orf150   4850000 perm   9034 sec   (537 perm/sec)   p_kst 3.298969e-06   p_cons 9.945291e-01   p_joint 7.628866e-06

Joint ci ratio: 6.359054e-01	ci left: 5.360379e-06	ci right 1.049374e-05	k: 37	n:4860000
Cons ci ratio: 1.318789e-04	ci left: 9.944637e-01	ci right 9.945950e-01	k: 4833414	n:4860000
KS ci ratio: 9.507379e-01	ci left: 1.881767e-06	ci right 5.346290e-06	k: 16	n:4860000
C9orf150   4860000 perm   9069 sec   (536 perm/sec)   p_kst 3.292181e-06   p_cons 9.945296e-01   p_joint 7.613169e-06

Joint ci ratio: 6.359054e-01	ci left: 5.349372e-06	ci right 1.047219e-05	k: 37	n:4870000
Cons ci ratio: 1.317566e-04	ci left: 9.944626e-01	ci right 9.945939e-01	k: 4843354	n:4870000
KS ci ratio: 9.507379e-01	ci left: 1.877903e-06	ci right 5.335312e-06	k: 16	n:4870000
C9orf150   4870000 perm   9104 sec   (535 perm/sec)   p_kst 3.285421e-06   p_cons 9.945285e-01   p_joint 7.597536e-06

Joint ci ratio: 6.359054e-01	ci left: 5.338410e-06	ci right 1.045073e-05	k: 37	n:4880000
Cons ci ratio: 1.316396e-04	ci left: 9.944612e-01	ci right 9.945923e-01	k: 4853292	n:4880000
KS ci ratio: 9.507379e-01	ci left: 1.874055e-06	ci right 5.324379e-06	k: 16	n:4880000
C9orf150   4880000 perm   9140 sec   (534 perm/sec)   p_kst 3.278689e-06   p_cons 9.945270e-01   p_joint 7.581967e-06

Joint ci ratio: 6.276998e-01	ci left: 5.499200e-06	ci right 1.066624e-05	k: 38	n:4890000
Cons ci ratio: 1.315031e-04	ci left: 9.944614e-01	ci right 9.945924e-01	k: 4863238	n:4890000
KS ci ratio: 9.239511e-01	ci left: 2.025180e-06	ci right 5.566180e-06	k: 17	n:4890000
C9orf150   4890000 perm   9175 sec   (533 perm/sec)   p_kst 3.476483e-06   p_cons 9.945272e-01   p_joint 7.770961e-06

Joint ci ratio: 6.276998e-01	ci left: 5.487977e-06	ci right 1.064447e-05	k: 38	n:4900000
Cons ci ratio: 1.313991e-04	ci left: 9.944590e-01	ci right 9.945898e-01	k: 4873171	n:4900000
KS ci ratio: 9.239511e-01	ci left: 2.021047e-06	ci right 5.554820e-06	k: 17	n:4900000
C9orf150   4900000 perm   9212 sec   (532 perm/sec)   p_kst 3.469388e-06   p_cons 9.945247e-01   p_joint 7.755102e-06

Joint ci ratio: 6.276998e-01	ci left: 5.476800e-06	ci right 1.062279e-05	k: 38	n:4910000
Cons ci ratio: 1.312511e-04	ci left: 9.944602e-01	ci right 9.945909e-01	k: 4883122	n:4910000
KS ci ratio: 9.239511e-01	ci left: 2.016931e-06	ci right 5.543507e-06	k: 17	n:4910000
C9orf150   4910000 perm   9247 sec   (531 perm/sec)   p_kst 3.462322e-06   p_cons 9.945259e-01   p_joint 7.739308e-06

Joint ci ratio: 6.276998e-01	ci left: 5.465669e-06	ci right 1.060120e-05	k: 38	n:4920000
Cons ci ratio: 1.311329e-04	ci left: 9.944590e-01	ci right 9.945896e-01	k: 4893061	n:4920000
KS ci ratio: 9.239511e-01	ci left: 2.012832e-06	ci right 5.532240e-06	k: 17	n:4920000
C9orf150   4920000 perm   9282 sec   (530 perm/sec)   p_kst 3.455285e-06   p_cons 9.945246e-01   p_joint 7.723577e-06

Joint ci ratio: 6.276998e-01	ci left: 5.454582e-06	ci right 1.057969e-05	k: 38	n:4930000
Cons ci ratio: 1.309736e-04	ci left: 9.944613e-01	ci right 9.945917e-01	k: 4903017	n:4930000
KS ci ratio: 9.239511e-01	ci left: 2.008749e-06	ci right 5.521018e-06	k: 17	n:4930000
C9orf150   4930000 perm   9318 sec   (529 perm/sec)   p_kst 3.448276e-06   p_cons 9.945268e-01   p_joint 7.707911e-06

Joint ci ratio: 6.276998e-01	ci left: 5.443540e-06	ci right 1.055828e-05	k: 38	n:4940000
Cons ci ratio: 1.308344e-04	ci left: 9.944619e-01	ci right 9.945922e-01	k: 4912965	n:4940000
KS ci ratio: 9.239511e-01	ci left: 2.004683e-06	ci right 5.509842e-06	k: 17	n:4940000
C9orf150   4940000 perm   9354 sec   (528 perm/sec)   p_kst 3.441296e-06   p_cons 9.945273e-01   p_joint 7.692308e-06

Joint ci ratio: 6.276998e-01	ci left: 5.432543e-06	ci right 1.053695e-05	k: 38	n:4950000
Cons ci ratio: 1.307101e-04	ci left: 9.944613e-01	ci right 9.945915e-01	k: 4922907	n:4950000
KS ci ratio: 9.239511e-01	ci left: 2.000633e-06	ci right 5.498711e-06	k: 17	n:4950000
C9orf150   4950000 perm   9391 sec   (527 perm/sec)   p_kst 3.434343e-06   p_cons 9.945267e-01   p_joint 7.676768e-06

Joint ci ratio: 6.276998e-01	ci left: 5.421591e-06	ci right 1.051570e-05	k: 38	n:4960000
Cons ci ratio: 1.305789e-04	ci left: 9.944613e-01	ci right 9.945914e-01	k: 4932852	n:4960000
KS ci ratio: 9.239511e-01	ci left: 1.996599e-06	ci right 5.487625e-06	k: 17	n:4960000
C9orf150   4960000 perm   9428 sec   (526 perm/sec)   p_kst 3.427419e-06   p_cons 9.945266e-01   p_joint 7.661290e-06

Joint ci ratio: 6.276998e-01	ci left: 5.410682e-06	ci right 1.049455e-05	k: 38	n:4970000
Cons ci ratio: 1.304577e-04	ci left: 9.944605e-01	ci right 9.945904e-01	k: 4942793	n:4970000
KS ci ratio: 9.239511e-01	ci left: 1.992582e-06	ci right 5.476583e-06	k: 17	n:4970000
C9orf150   4970000 perm   9465 sec   (525 perm/sec)   p_kst 3.420523e-06   p_cons 9.945258e-01   p_joint 7.645875e-06

Joint ci ratio: 6.276998e-01	ci left: 5.399817e-06	ci right 1.047347e-05	k: 38	n:4980000
Cons ci ratio: 1.303177e-04	ci left: 9.944613e-01	ci right 9.945911e-01	k: 4952742	n:4980000
KS ci ratio: 9.239511e-01	ci left: 1.988581e-06	ci right 5.465586e-06	k: 17	n:4980000
C9orf150   4980000 perm   9502 sec   (524 perm/sec)   p_kst 3.413655e-06   p_cons 9.945265e-01   p_joint 7.630522e-06

Joint ci ratio: 6.276998e-01	ci left: 5.388996e-06	ci right 1.045248e-05	k: 38	n:4990000
Cons ci ratio: 1.301805e-04	ci left: 9.944619e-01	ci right 9.945916e-01	k: 4962690	n:4990000
KS ci ratio: 9.239511e-01	ci left: 1.984596e-06	ci right 5.454633e-06	k: 17	n:4990000
C9orf150   4990000 perm   9539 sec   (523 perm/sec)   p_kst 3.406814e-06   p_cons 9.945271e-01   p_joint 7.615230e-06

Joint ci ratio: 5.909596e-01	ci left: 6.223869e-06	ci right 1.158413e-05	k: 43	n:5000000
Cons ci ratio: 1.300461e-04	ci left: 9.944623e-01	ci right 9.945919e-01	k: 4972637	n:5000000
KS ci ratio: 8.993079e-01	ci left: 2.133590e-06	ci right 5.689546e-06	k: 18	n:5000000
C9orf150   5000000 perm   9576 sec   (522 perm/sec)   p_kst 3.600000e-06   p_cons 9.945274e-01   p_joint 8.600000e-06

Outputting figure to mutsig2_images.part000000000027/C9orf150.3_695_5000000_3.6e-06_0.99453_8.6e-06.png
                gene_name: C9orf150
               theta_stop: 0.90 
                    nperm: 5000000 
                     p_ks: 3.60e-06 
        ci_ks_bounds_left: 2.13e-06 
       ci_ks_bounds_right: 5.69e-06 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 8.60e-06 
     ci_joint_bounds_left: 6.22e-06 
    ci_joint_bounds_right: 1.16e-05 

Current progress: 50 percent done.
C7orf63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.653637e-01	ci left: 4.878580e-02	ci right 5.767674e-02	k: 531	n:10000
Cons ci ratio: 2.256183e-01	ci left: 2.598777e-02	ci right 3.269015e-02	k: 292	n:10000
KS ci ratio: 7.208946e-02	ci left: 2.199059e-01	ci right 2.364527e-01	k: 2281	n:10000
C7orf63   10000 perm   1 sec   (6852 perm/sec)   p_kst 2.281000e-01   p_cons 2.920000e-02   p_joint 5.310000e-02

Joint ci ratio: 1.706635e-01	ci left: 2.350321e-02	ci right 2.793614e-02	k: 513	n:20000
Cons ci ratio: 1.596804e-01	ci left: 2.691024e-02	ci right 3.162794e-02	k: 584	n:20000
KS ci ratio: 5.075936e-02	ci left: 2.238354e-01	ci right 2.355433e-01	k: 4593	n:20000
C7orf63   20000 perm   3 sec   (5987 perm/sec)   p_kst 2.296500e-01   p_cons 2.920000e-02   p_joint 2.565000e-02

Joint ci ratio: 1.406636e-01	ci left: 2.345587e-02	ci right 2.703688e-02	k: 756	n:30000
Cons ci ratio: 1.281768e-01	ci left: 2.829237e-02	ci right 3.219931e-02	k: 906	n:30000
KS ci ratio: 4.145279e-02	ci left: 2.248505e-01	ci right 2.344019e-01	k: 6888	n:30000
C7orf63   30000 perm   5 sec   (5576 perm/sec)   p_kst 2.296000e-01   p_cons 3.020000e-02   p_joint 2.520000e-02

Joint ci ratio: 1.222126e-01	ci left: 2.354057e-02	ci right 2.662890e-02	k: 1002	n:40000
Cons ci ratio: 1.122715e-01	ci left: 2.791220e-02	ci right 3.125656e-02	k: 1182	n:40000
KS ci ratio: 3.587726e-02	ci left: 2.257092e-01	ci right 2.339800e-01	k: 9193	n:40000
C7orf63   40000 perm   7 sec   (5472 perm/sec)   p_kst 2.298250e-01   p_cons 2.955000e-02   p_joint 2.505000e-02

Joint ci ratio: 1.097943e-01	ci left: 2.349344e-02	ci right 2.624210e-02	k: 1242	n:50000
Cons ci ratio: 1.005855e-01	ci left: 2.799524e-02	ci right 3.097972e-02	k: 1473	n:50000
KS ci ratio: 3.214684e-02	ci left: 2.255216e-01	ci right 2.329098e-01	k: 11460	n:50000
C7orf63   50000 perm   9 sec   (5368 perm/sec)   p_kst 2.292000e-01   p_cons 2.946000e-02   p_joint 2.484000e-02

Joint ci ratio: 1.044565e-01	ci left: 2.173412e-02	ci right 2.414566e-02	k: 1375	n:60000
Cons ci ratio: 9.268374e-02	ci left: 2.760661e-02	ci right 3.030587e-02	k: 1736	n:60000
KS ci ratio: 2.936006e-02	ci left: 2.256758e-01	ci right 2.324171e-01	k: 13742	n:60000
C7orf63   60000 perm   11 sec   (5270 perm/sec)   p_kst 2.290333e-01   p_cons 2.893333e-02   p_joint 2.291667e-02

Joint ci ratio: 9.622855e-02	ci left: 2.204167e-02	ci right 2.428381e-02	k: 1620	n:70000
Cons ci ratio: 8.553727e-02	ci left: 2.788121e-02	ci right 3.038659e-02	k: 2038	n:70000
KS ci ratio: 2.707320e-02	ci left: 2.273415e-01	ci right 2.335951e-01	k: 16132	n:70000
C7orf63   70000 perm   14 sec   (5173 perm/sec)   p_kst 2.304571e-01   p_cons 2.911429e-02   p_joint 2.314286e-02

Outputting figure to mutsig2_images.part000000000027/C7orf63.2_2918_70000_0.23046_0.029114_0.023143.png
                gene_name: C7orf63
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.024 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000027
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 27 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1651>
Subject: Job 9876995: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1651>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000028> was used as the working directory.
Started at Fri Oct  5 22:31:16 2012
Results reported at Fri Oct  5 22:33:15 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000028.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000028.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 28  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000028.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    126.52 sec.
    Max Memory :      1788 MB
    Max Swap   :      4488 MB

    Max Processes  :         7
    Max Threads    :        55

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
28
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 28
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 28: processing genes 2449 - 2539
Calculating significance of each gene.
Using projection method.
2449	C9orf172	1
2450	C9orf173	1
2451	C9orf21	1
2452	C9orf23	1
2453	C9orf24	1
2454	C9orf25	1
2455	C9orf3	1
2456	C9orf30	1
2457	C9orf37	1
2458	C9orf4	1
2459	C9orf40	1
2460	C9orf41	1
2461	C9orf43	1
2462	C9orf46	1
2463	C9orf47	1
2464	C9orf5	1
2465	C9orf50	1
2466	C9orf6	1
2467	C9orf64	1
2468	C9orf66	1
2469	C9orf68	1
2470	C9orf69	1
2471	C9orf7	1
2472	C9orf71	1
2473	C9orf72	1
2474	C9orf78	1
2475	C9orf79	1
2476	C9orf80	1
2477	C9orf82	1
2478	C9orf84	2.214379e-01
2479	C9orf85	1
2480	C9orf86	1
2481	C9orf89	1
2482	C9orf9	1
2483	C9orf91	1
2484	C9orf93	1
2485	C9orf95	1
2486	C9orf96	1
2487	C9orf98	8.784414e-02
2488	CA1	1
2489	CA10	1
2490	CA11	1
2491	CA12	1
2492	CA13	1
2493	CA14	9.355599e-02
2494	CA2	8.215628e-02
2495	CA3	1
2496	CA4	1
2497	CA5A	1
2498	CA5B	1
2499	CA6	1
2500	CA7	1
2501	CA8	5.102375e-02
2502	CA9	1.411254e-01
2503	CAB39	1
2504	CAB39L	1
2505	CABC1	1.802358e-01
2506	CABIN1	1
2507	CABLES1	1
2508	CABLES2	1
2509	CABP1	1
2510	CABP2	1
2511	CABP4	1.139735e-02
2512	CABP5	1
2513	CABP7	1
2514	CABYR	1
2515	CACHD1	4.424568e-02
2516	CACNA1A	1.910445e-01
2517	CACNA1B	1
2518	CACNA1C	1
2519	CACNA1D	1
2520	CACNA1E	1
2521	CACNA1F	1
2522	CACNA1G	1
2523	CACNA1H	1
2524	CACNA1I	4.230095e-01
2525	CACNA1S	3.834546e-01
2526	CACNA2D1	1
2527	CACNA2D2	1
2528	CACNA2D3	1
2529	CACNA2D4	1.620083e-01
2530	CACNB1	1
2531	CACNB2	1.204723e-01
2532	CACNB3	1
2533	CACNB4	1
2534	CACNG1	1
2535	CACNG2	1
2536	CACNG3	1
2537	CACNG4	1.240375e-01
2538	CACNG5	1
2539	CACNG6	1
Done

Running MutSig 2:
Scatter job 28: processing genes 2449 - 2539
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CACHD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.115002e-02	ci left: 6.032715e-01	ci right 6.224627e-01	k: 6129	n:10000
Cons ci ratio: 1.235896e-01	ci left: 8.572423e-02	ci right 9.711508e-02	k: 913	n:10000
KS ci ratio: 3.288380e-02	ci left: 5.771752e-01	ci right 5.965742e-01	k: 5869	n:10000
CACHD1   10000 perm   2 sec   (4746 perm/sec)   p_kst 5.869000e-01   p_cons 9.130000e-02   p_joint 6.129000e-01

Joint ci ratio: 2.019174e-02	ci left: 6.466573e-01	ci right 6.598981e-01	k: 13066	n:20000
Cons ci ratio: 8.648459e-02	ci left: 8.910730e-02	ci right 9.721143e-02	k: 1862	n:20000
KS ci ratio: 2.340987e-02	ci left: 5.767814e-01	ci right 5.904943e-01	k: 11673	n:20000
CACHD1   20000 perm   9 sec   (2230 perm/sec)   p_kst 5.836500e-01   p_cons 9.310000e-02   p_joint 6.533000e-01

Outputting figure to mutsig2_images.part000000000028/CACHD1.2_3780_20000_0.58365_0.0931_0.6533.png
                gene_name: CACHD1
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.66 

Current progress: 50 percent done.
CACNA1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.956399e-02	ci left: 7.926319e-01	ci right 8.083926e-01	k: 8006	n:10000
Cons ci ratio: 2.430514e-02	ci left: 7.134081e-01	ci right 7.310622e-01	k: 7223	n:10000
KS ci ratio: 7.304386e-02	ci left: 2.153664e-01	ci right 2.317949e-01	k: 2235	n:10000
CACNA1A   10000 perm   2 sec   (4021 perm/sec)   p_kst 2.235000e-01   p_cons 7.223000e-01   p_joint 8.006000e-01

Outputting figure to mutsig2_images.part000000000028/CACNA1A.2_7823_10000_0.2235_0.7223_0.8006.png
                gene_name: CACNA1A
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000028
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 28 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1709>
Subject: Job 9877000: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1709>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000029> was used as the working directory.
Started at Fri Oct  5 22:31:16 2012
Results reported at Fri Oct  5 22:33:14 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000029.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000029.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 29  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000029.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    102.92 sec.
    Max Memory :      1757 MB
    Max Swap   :      4561 MB

    Max Processes  :         7
    Max Threads    :        55

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
29
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 29
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 29: processing genes 2540 - 2629
Calculating significance of each gene.
Using projection method.
2540	CACNG7	1
2541	CACNG8	1
2542	CACYBP	4.551222e-02
2543	CAD	3.571795e-01
2544	CADM1	1
2545	CADM2	1.018095e-01
2546	CADM3	1
2547	CADM4	1
2548	CADPS	1
2549	CADPS2	1
2550	CAGE1	1
2551	CALB1	1
2552	CALB2	1
2553	CALCA	1
2554	CALCB	1
2555	CALCOCO1	1
2556	CALCOCO2	1
2557	CALCR	1
2558	CALCRL	1
2559	CALD1	1
2560	CALHM1	1
2561	CALHM2	1
2562	CALM1	1
2563	CALM2	1
2564	CALM3	1
2565	CALML3	1
2566	CALML4	1
2567	CALML5	1
2568	CALML6	1.991770e-02
2569	CALN1	1
2570	CALR	1
2571	CALR3	1
2572	CALU	1
2573	CALY	1
2574	CAMK1	1
2575	CAMK1D	1
2576	CAMK1G	1
2577	CAMK2A	1
2578	CAMK2B	1
2579	CAMK2D	1
2580	CAMK2G	1
2581	CAMK2N1	1
2582	CAMK2N2	1
2583	CAMK4	1
2584	CAMKK1	1
2585	CAMKK2	1
2586	CAMKV	1
2587	CAMLG	1
2588	CAMP	1
2589	CAMSAP1	1
2590	CAMSAP1L1	1
In gene CAMTA1 the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 5065    n = 1	mu =   9.08e-07
2591	CAMTA1	1.578013e-01
2592	CAMTA2	1
2593	CAND1	1
2594	CAND2	1
2595	CANT1	1
2596	CANX	1
2597	CAP1	1
2598	CAP2	1
2599	CAPG	1
2600	CAPN1	1
2601	CAPN10	1
2602	CAPN11	1
2603	CAPN12	1
2604	CAPN13	1.046978e-01
2605	CAPN2	1
2606	CAPN3	2.165990e-01
2607	CAPN5	1
2608	CAPN6	1
2609	CAPN7	1
2610	CAPN9	1
2611	CAPNS1	1
2612	CAPNS2	1
2613	CAPRIN1	1
2614	CAPRIN2	1
2615	CAPS	1
2616	CAPS2	1
2617	CAPSL	1
2618	CAPZA1	1
2619	CAPZA2	1
2620	CAPZA3	7.181521e-02
2621	CAPZB	1
2622	CARD10	1
2623	CARD11	2.136271e-01
2624	CARD14	1
2625	CARD16	1.799457e-02
2626	CARD17	1
2627	CARD18	1
2628	CARD6	1
2629	CARD8	1
Done

Running MutSig 2:
Scatter job 29: processing genes 2540 - 2629
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CAMTA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.860549e-01	ci left: 3.853448e-02	ci right 4.653479e-02	k: 424	n:10000
Cons ci ratio: 1.388648e-01	ci left: 6.865367e-02	ci right 7.899624e-02	k: 737	n:10000
KS ci ratio: 1.242641e-01	ci left: 8.484960e-02	ci right 9.619025e-02	k: 904	n:10000
CAMTA1   10000 perm   2 sec   (4378 perm/sec)   p_kst 9.040000e-02   p_cons 7.370000e-02   p_joint 4.240000e-02

Joint ci ratio: 7.070838e-02	ci left: 1.284701e-01	ci right 1.379368e-01	k: 2663	n:20000
Cons ci ratio: 9.702811e-02	ci left: 7.177763e-02	ci right 7.914636e-02	k: 1508	n:20000
KS ci ratio: 8.765693e-02	ci left: 8.690165e-02	ci right 9.491774e-02	k: 1817	n:20000
CAMTA1   20000 perm   7 sec   (2696 perm/sec)   p_kst 9.085000e-02   p_cons 7.540000e-02   p_joint 1.331500e-01

Outputting figure to mutsig2_images.part000000000029/CAMTA1.2_5114_20000_0.09085_0.0754_0.13315.png
                gene_name: CAMTA1
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.091 
        ci_ks_bounds_left: 0.087 
       ci_ks_bounds_right: 0.095 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000029
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 29 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1727>
Subject: Job 9877001: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1727>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000030> was used as the working directory.
Started at Fri Oct  5 22:31:16 2012
Results reported at Fri Oct  5 22:33:06 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000030.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000030.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 30  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000030.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     98.86 sec.
    Max Memory :      2155 MB
    Max Swap   :      4783 MB

    Max Processes  :         7
    Max Threads    :        71

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
30
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 30
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 30: processing genes 2630 - 2720
Calculating significance of each gene.
Using projection method.
2630	CARD9	1.446196e-03
2631	CARHSP1	1
2632	CARKD	1
2633	CARM1	1
2634	CARNS1	1
2635	CARS	1
2636	CARS2	8.506963e-02
2637	CARTPT	1
2638	CASC1	1
2639	CASC3	1
2640	CASC4	1
2641	CASC5	1
2642	CASD1	1
2643	CASK	1
2644	CASKIN1	1
2645	CASKIN2	1
2646	CASP1	7.229159e-03
2647	CASP10	1
2648	CASP14	1
2649	CASP2	1
2650	CASP3	1
2651	CASP4	1
2652	CASP5	1
2653	CASP6	1
2654	CASP7	1
2655	CASP8	1
2656	CASP8AP2	1
2657	CASP9	1
2658	CASQ1	1
2659	CASQ2	1
2660	CASR	3.368883e-01
2661	CASS4	1
2662	CAST	1
2663	CASZ1	2.397448e-01
2664	CAT	1
2665	CATSPER1	1
2666	CATSPER2	1
2667	CATSPER3	1
2668	CATSPER4	1
2669	CATSPERB	1
2670	CATSPERG	6.723811e-02
2671	CAV1	1
2672	CAV2	1
2673	CAV3	1
2674	CBARA1	1.459729e-01
2675	CBFA2T2	1
2676	CBFA2T3	3.713602e-02
2677	CBFB	1
2678	CBL	1
2679	CBLB	1
2680	CBLC	1
2681	CBLL1	1
2682	CBLN1	1
2683	CBLN2	1
2684	CBLN3	1
2685	CBLN4	1
2686	CBR1	1
2687	CBR3	1
2688	CBR4	1
2689	CBS	1
2690	CBWD1	1
2691	CBWD2	1
2692	CBWD6	1
2693	CBX1	1
2694	CBX2	1
2695	CBX3	1
2696	CBX4	1
2697	CBX5	1
2698	CBX6	1
2699	CBX7	1
2700	CBX8	1
2701	CBY1	1
2702	CC2D1A	1
2703	CC2D1B	2.381081e-02
2704	CC2D2A	1
2705	CC2D2B	1
2706	CCAR1	1
2707	CCBE1	1
2708	CCBL1	1
2709	CCBL2	1
2710	CCBP2	1
2711	CCDC101	1
2712	CCDC102A	8.244886e-02
2713	CCDC102B	1
2714	CCDC103	1
2715	CCDC104	1
2716	CCDC105	5.321447e-03
2717	CCDC106	1
2718	CCDC107	1
2719	CCDC108	1
2720	CCDC109A	1
Done

Running MutSig 2:
Scatter job 30: processing genes 2630 - 2720
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CARD9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.477798e-02	ci left: 5.497037e-01	ci right 5.692617e-01	k: 5595	n:10000
Cons ci ratio: 2.019906e-02	ci left: 7.820857e-01	ci right 7.981449e-01	k: 7902	n:10000
KS ci ratio: 8.324248e-02	ci left: 1.738909e-01	ci right 1.890951e-01	k: 1814	n:10000
CARD9   10000 perm   1 sec   (7017 perm/sec)   p_kst 1.814000e-01   p_cons 7.902000e-01   p_joint 5.595000e-01

Outputting figure to mutsig2_images.part000000000030/CARD9.2_1712_10000_0.1814_0.7902_0.5595.png
                gene_name: CARD9
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 25 percent done.
CASP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.572823e-02	ci left: 6.898019e-01	ci right 7.078821e-01	k: 6989	n:10000
Cons ci ratio: 2.875620e-02	ci left: 6.406595e-01	ci right 6.594530e-01	k: 6501	n:10000
KS ci ratio: 7.899090e-02	ci left: 1.897361e-01	ci right 2.054405e-01	k: 1975	n:10000
CASP1   10000 perm   1 sec   (7201 perm/sec)   p_kst 1.975000e-01   p_cons 6.501000e-01   p_joint 6.989000e-01

Outputting figure to mutsig2_images.part000000000030/CASP1.2_1251_10000_0.1975_0.6501_0.6989.png
                gene_name: CASP1
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 50 percent done.
CC2D1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.171582e-02	ci left: 3.553558e-01	ci right 3.743230e-01	k: 3648	n:10000
KS ci ratio: 3.070229e-03	ci left: 9.922835e-01	ci right 9.954183e-01	k: 9940	n:10000
CC2D1B   10000 perm   2 sec   (6422 perm/sec)   p_kst 9.940000e-01   p_cons 3.648000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000030/CC2D1B.2_2669_10000_0.994_0.3648_1.png
                gene_name: CC2D1B
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 1.00 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
CCDC105
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.619600e-01	ci left: 1.902780e-02	ci right 2.485533e-02	k: 218	n:10000
Cons ci ratio: 3.155130e-01	ci left: 1.280183e-02	ci right 1.768651e-02	k: 151	n:10000
KS ci ratio: 3.841039e-02	ci left: 5.002504e-01	ci right 5.199437e-01	k: 5101	n:10000
CCDC105   10000 perm   1 sec   (6929 perm/sec)   p_kst 5.101000e-01   p_cons 1.510000e-02   p_joint 2.180000e-02

Joint ci ratio: 2.463622e-01	ci left: 1.095946e-02	ci right 1.408466e-02	k: 249	n:20000
Cons ci ratio: 2.285098e-01	ci left: 1.284199e-02	ci right 1.620133e-02	k: 289	n:20000
KS ci ratio: 2.763625e-02	ci left: 4.944957e-01	ci right 5.084039e-01	k: 10029	n:20000
CCDC105   20000 perm   3 sec   (6212 perm/sec)   p_kst 5.014500e-01   p_cons 1.445000e-02   p_joint 1.245000e-02

Joint ci ratio: 2.458934e-01	ci left: 7.367115e-03	ci right 9.463093e-03	k: 251	n:30000
Cons ci ratio: 1.878983e-01	ci left: 1.295527e-02	ci right 1.567332e-02	k: 428	n:30000
KS ci ratio: 2.253465e-02	ci left: 4.964588e-01	ci right 5.078074e-01	k: 15064	n:30000
CCDC105   30000 perm   5 sec   (5759 perm/sec)   p_kst 5.021333e-01   p_cons 1.426667e-02   p_joint 8.366667e-03

Joint ci ratio: 1.985553e-01	ci left: 8.691436e-03	ci right 1.063075e-02	k: 385	n:40000
Cons ci ratio: 1.633056e-01	ci left: 1.303941e-02	ci right 1.538189e-02	k: 567	n:40000
KS ci ratio: 1.955620e-02	ci left: 4.961877e-01	ci right 5.060122e-01	k: 20044	n:40000
CCDC105   40000 perm   7 sec   (5583 perm/sec)   p_kst 5.011000e-01   p_cons 1.417500e-02   p_joint 9.625000e-03

Joint ci ratio: 1.362716e-01	ci left: 1.516958e-02	ci right 1.740709e-02	k: 813	n:50000
Cons ci ratio: 1.452375e-01	ci left: 1.331619e-02	ci right 1.542075e-02	k: 717	n:50000
KS ci ratio: 1.751763e-02	ci left: 4.959675e-01	ci right 5.047525e-01	k: 25018	n:50000
CCDC105   50000 perm   9 sec   (5467 perm/sec)   p_kst 5.003600e-01   p_cons 1.434000e-02   p_joint 1.626000e-02

Joint ci ratio: 1.419524e-01	ci left: 1.165848e-02	ci right 1.345580e-02	k: 752	n:60000
Cons ci ratio: 1.317787e-01	ci left: 1.357483e-02	ci right 1.550588e-02	k: 871	n:60000
KS ci ratio: 1.600827e-02	ci left: 4.958243e-01	ci right 5.038424e-01	k: 29990	n:60000
CCDC105   60000 perm   11 sec   (5339 perm/sec)   p_kst 4.998333e-01   p_cons 1.451667e-02   p_joint 1.253333e-02

Joint ci ratio: 1.611148e-01	ci left: 7.709774e-03	ci right 9.074305e-03	k: 586	n:70000
Cons ci ratio: 1.220238e-01	ci left: 1.364133e-02	ci right 1.542781e-02	k: 1016	n:70000
KS ci ratio: 1.478333e-02	ci left: 4.973889e-01	ci right 5.048110e-01	k: 35077	n:70000
CCDC105   70000 perm   14 sec   (5097 perm/sec)   p_kst 5.011000e-01   p_cons 1.451429e-02   p_joint 8.371429e-03

Joint ci ratio: 1.232458e-01	ci left: 1.171734e-02	ci right 1.326831e-02	k: 998	n:80000
Cons ci ratio: 1.146084e-01	ci left: 1.358586e-02	ci right 1.524963e-02	k: 1152	n:80000
KS ci ratio: 1.381303e-02	ci left: 4.981915e-01	ci right 5.051334e-01	k: 40133	n:80000
CCDC105   80000 perm   16 sec   (4993 perm/sec)   p_kst 5.016625e-01   p_cons 1.440000e-02   p_joint 1.247500e-02

Joint ci ratio: 1.305247e-01	ci left: 9.274209e-03	ci right 1.057989e-02	k: 892	n:90000
Cons ci ratio: 1.068127e-01	ci left: 1.395630e-02	ci right 1.554187e-02	k: 1326	n:90000
KS ci ratio: 1.300879e-02	ci left: 4.989390e-01	ci right 5.054831e-01	k: 45199	n:90000
CCDC105   90000 perm   18 sec   (4894 perm/sec)   p_kst 5.022111e-01   p_cons 1.473333e-02   p_joint 9.911111e-03

Joint ci ratio: 1.195337e-01	ci left: 1.000361e-02	ci right 1.128501e-02	k: 1063	n:100000
Cons ci ratio: 1.020519e-01	ci left: 1.379745e-02	ci right 1.529090e-02	k: 1453	n:100000
KS ci ratio: 1.233856e-02	ci left: 4.992160e-01	ci right 5.054238e-01	k: 50232	n:100000
CCDC105   100000 perm   21 sec   (4843 perm/sec)   p_kst 5.023200e-01   p_cons 1.453000e-02   p_joint 1.063000e-02

Joint ci ratio: 1.130663e-01	ci left: 1.019757e-02	ci right 1.142843e-02	k: 1188	n:110000
Cons ci ratio: 9.670323e-02	ci left: 1.400594e-02	ci right 1.543799e-02	k: 1618	n:110000
KS ci ratio: 1.177661e-02	ci left: 4.988407e-01	ci right 5.047592e-01	k: 55198	n:110000
CCDC105   110000 perm   23 sec   (4779 perm/sec)   p_kst 5.018000e-01   p_cons 1.470909e-02   p_joint 1.080000e-02

Joint ci ratio: 1.089380e-01	ci left: 1.009313e-02	ci right 1.126404e-02	k: 1280	n:120000
Cons ci ratio: 9.275121e-02	ci left: 1.398594e-02	ci right 1.535433e-02	k: 1759	n:120000
KS ci ratio: 1.128109e-02	ci left: 4.987085e-01	ci right 5.043747e-01	k: 60185	n:120000
CCDC105   120000 perm   25 sec   (4723 perm/sec)   p_kst 5.015417e-01   p_cons 1.465833e-02   p_joint 1.066667e-02

Joint ci ratio: 1.043512e-01	ci left: 1.017778e-02	ci right 1.130574e-02	k: 1395	n:130000
Cons ci ratio: 8.891551e-02	ci left: 1.407535e-02	ci right 1.539258e-02	k: 1914	n:130000
KS ci ratio: 1.084711e-02	ci left: 4.984243e-01	ci right 5.038679e-01	k: 65149	n:130000
CCDC105   130000 perm   28 sec   (4661 perm/sec)   p_kst 5.011462e-01   p_cons 1.472308e-02   p_joint 1.073077e-02

Joint ci ratio: 1.011138e-01	ci left: 1.008407e-02	ci right 1.116492e-02	k: 1486	n:140000
Cons ci ratio: 8.634881e-02	ci left: 1.388032e-02	ci right 1.513990e-02	k: 2030	n:140000
KS ci ratio: 1.046262e-02	ci left: 4.980416e-01	ci right 5.032869e-01	k: 70093	n:140000
CCDC105   140000 perm   30 sec   (4596 perm/sec)   p_kst 5.006643e-01   p_cons 1.450000e-02   p_joint 1.061429e-02

Joint ci ratio: 1.076241e-01	ci left: 8.294613e-03	ci right 9.244521e-03	k: 1314	n:150000
Cons ci ratio: 8.359788e-02	ci left: 1.384236e-02	ci right 1.505652e-02	k: 2166	n:150000
KS ci ratio: 1.009501e-02	ci left: 4.987664e-01	ci right 5.038336e-01	k: 75195	n:150000
CCDC105   150000 perm   33 sec   (4535 perm/sec)   p_kst 5.013000e-01   p_cons 1.444000e-02   p_joint 8.760000e-03

Joint ci ratio: 9.996729e-02	ci left: 9.042659e-03	ci right 1.000024e-02	k: 1522	n:160000
Cons ci ratio: 8.082749e-02	ci left: 1.390157e-02	ci right 1.507862e-02	k: 2317	n:160000
KS ci ratio: 9.777028e-03	ci left: 4.987157e-01	ci right 5.036218e-01	k: 80187	n:160000
CCDC105   160000 perm   36 sec   (4475 perm/sec)   p_kst 5.011688e-01   p_cons 1.448125e-02   p_joint 9.512500e-03

Outputting figure to mutsig2_images.part000000000030/CCDC105.2_1528_160000_0.50117_0.014481_0.0095125.png
                gene_name: CCDC105
               theta_stop: 0.100 
                    nperm: 160000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.0095 
     ci_joint_bounds_left: 0.0090 
    ci_joint_bounds_right: 0.010 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000030
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 30 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1553>
Subject: Job 9877003: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1553>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000031> was used as the working directory.
Started at Fri Oct  5 22:31:55 2012
Results reported at Fri Oct  5 22:33:39 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000031.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000031.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 31  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000031.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    164.36 sec.
    Max Memory :      2010 MB
    Max Swap   :      4702 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
31
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 31
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 31: processing genes 2721 - 2811
Calculating significance of each gene.
Using projection method.
2721	CCDC109B	1
2722	CCDC11	1
2723	CCDC110	1
2724	CCDC111	1
2725	CCDC112	1
2726	CCDC113	1
2727	CCDC114	1
2728	CCDC115	1
2729	CCDC116	1
2730	CCDC117	1
2731	CCDC12	1
2732	CCDC120	1
2733	CCDC121	2.765346e-03
2734	CCDC122	1
2735	CCDC123	1
2736	CCDC124	1
2737	CCDC125	1
2738	CCDC126	1
2739	CCDC127	1
2740	CCDC129	1
2741	CCDC13	8.315727e-02
2742	CCDC130	1
2743	CCDC132	1
2744	CCDC134	1
2745	CCDC135	6.839184e-02
2746	CCDC136	1
2747	CCDC137	1
2748	CCDC138	1
2749	CCDC14	1
2750	CCDC140	8.976999e-03
2751	CCDC141	1
2752	CCDC142	1.314398e-01
2753	CCDC144A	1.993516e-03
2754	CCDC144B	1.100051e-01
2755	CCDC144NL	3.103547e-02
2756	CCDC146	1
2757	CCDC147	2.675793e-01
2758	CCDC148	1
2759	CCDC149	1
2760	CCDC15	7.349238e-02
2761	CCDC150	1.152733e-01
2762	CCDC151	1
2763	CCDC153	1
2764	CCDC155	1
2765	CCDC157	1
2766	CCDC158	1
2767	CCDC159	1
2768	CCDC160	1
2769	CCDC17	1
2770	CCDC18	1
2771	CCDC19	1
2772	CCDC21	1
2773	CCDC22	1.088968e-01
2774	CCDC23	1
2775	CCDC24	1
2776	CCDC25	1
2777	CCDC27	1
2778	CCDC28A	1
2779	CCDC28B	1
2780	CCDC3	5.711504e-02
2781	CCDC30	1
2782	CCDC33	1
2783	CCDC34	7.773251e-02
2784	CCDC36	1
2785	CCDC37	1
2786	CCDC38	1
2787	CCDC39	8.747757e-02
2788	CCDC40	1
2789	CCDC41	1
2790	CCDC42	1
2791	CCDC43	1
2792	CCDC45	1
2793	CCDC46	1
2794	CCDC47	1
2795	CCDC48	1
2796	CCDC50	1
2797	CCDC51	1
2798	CCDC52	1
2799	CCDC53	1
2800	CCDC54	1
2801	CCDC55	1
2802	CCDC56	1
2803	CCDC57	9.402849e-02
2804	CCDC58	1
2805	CCDC59	1
2806	CCDC6	1
2807	CCDC60	1
2808	CCDC61	1
2809	CCDC62	1
2810	CCDC63	1
2811	CCDC64	1
Done

Running MutSig 2:
Scatter job 31: processing genes 2721 - 2811
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CCDC144A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.208602e-02	ci left: 3.520751e-01	ci right 3.710056e-01	k: 3615	n:10000
KS ci ratio: 1.148566e-02	ci left: 9.155397e-01	ci right 9.262136e-01	k: 9210	n:10000
CCDC144A   10000 perm   2 sec   (4454 perm/sec)   p_kst 9.210000e-01   p_cons 3.615000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000031/CCDC144A.3_4356_10000_0.921_0.3615_1.png
                gene_name: CCDC144A
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
CCDC121
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.150556e-02	ci left: 5.978492e-01	ci right 6.170882e-01	k: 6075	n:10000
Cons ci ratio: 4.860600e-02	ci left: 3.844050e-01	ci right 4.036568e-01	k: 3940	n:10000
KS ci ratio: 4.074522e-02	ci left: 4.707644e-01	ci right 4.904469e-01	k: 4806	n:10000
CCDC121   10000 perm   2 sec   (6357 perm/sec)   p_kst 4.806000e-01   p_cons 3.940000e-01   p_joint 6.075000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC121.2_1331_10000_0.4806_0.394_0.6075.png
                gene_name: CCDC121
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000031
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 31 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1644>
Subject: Job 9877005: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1644>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000032> was used as the working directory.
Started at Fri Oct  5 22:32:03 2012
Results reported at Sat Oct  6 01:34:14 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000032.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000032.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 32  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000032.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  11044.79 sec.
    Max Memory :      2001 MB
    Max Swap   :      4744 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
32
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 32
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 32: processing genes 2812 - 2901
Calculating significance of each gene.
Using projection method.
2812	CCDC64B	1
2813	CCDC65	1
2814	CCDC66	1
2815	CCDC67	1
2816	CCDC68	1
2817	CCDC69	1
2818	CCDC7	6.829811e-02
2819	CCDC70	1
2820	CCDC71	5.373743e-02
2821	CCDC72	1
2822	CCDC73	1
2823	CCDC74A	7.482331e-02
2824	CCDC74B	1
2825	CCDC75	1
2826	CCDC76	1
2827	CCDC77	1
2828	CCDC78	1
2829	CCDC8	6.373410e-02
2830	CCDC80	1
2831	CCDC81	1
2832	CCDC82	1
2833	CCDC83	1
2834	CCDC84	1
2835	CCDC85A	1.498368e-01
2836	CCDC86	1
2837	CCDC87	1
2838	CCDC88A	1.479984e-01
2839	CCDC88B	2.258876e-01
2840	CCDC88C	1
2841	CCDC89	1
2842	CCDC9	1
2843	CCDC90A	1
2844	CCDC90B	1
2845	CCDC91	1
In gene CCDC92 the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 1012    n = 1	mu =   9.08e-07
2846	CCDC92	1.224879e-01
2847	CCDC93	1.831822e-01
2848	CCDC94	1
2849	CCDC96	1
2850	CCDC97	1
2851	CCDC99	1
2852	CCHCR1	1
2853	CCIN	1
2854	CCK	1
2855	CCKAR	1
2856	CCKBR	1
2857	CCL1	1
2858	CCL11	1
2859	CCL13	1
2860	CCL14	1
2861	CCL15	1
2862	CCL16	1
2863	CCL17	1
2864	CCL18	1
2865	CCL19	1
2866	CCL2	1
2867	CCL20	1
2868	CCL21	1
2869	CCL22	1
2870	CCL23	1
2871	CCL24	1
2872	CCL25	1
2873	CCL26	1
2874	CCL27	1
2875	CCL28	1
2876	CCL3	1
2877	CCL4	1
2878	CCL5	1
2879	CCL7	1
2880	CCL8	1
2881	CCM2	1
2882	CCNA1	6.769106e-02
2883	CCNA2	1
2884	CCNB1	1
2885	CCNB1IP1	1
2886	CCNB2	1
2887	CCNB3	1
2888	CCNC	5.246744e-02
2889	CCND1	1
2890	CCND2	1
2891	CCND3	1
2892	CCNDBP1	1
2893	CCNE1	1
2894	CCNE2	1.197904e-01
2895	CCNF	3.470375e-03
In gene CCNG1 the following bins exceed PROBCAP:
    PRAD-CH-5788	categ 6	N = 908     n = 1	mu =   2.66e-07
2896	CCNG1	2.615221e-02
2897	CCNG2	1
2898	CCNH	1
2899	CCNI	1
2900	CCNI2	1
2901	CCNJ	1
Done

Running MutSig 2:
Scatter job 32: processing genes 2812 - 2901
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CCNF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 2.447923e-01	ci left: 2.193497e-02	ci right 2.814593e-02	k: 249	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
CCNF   10000 perm   2 sec   (5384 perm/sec)   p_kst 1.000000e-04   p_cons 2.490000e-02   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 1.734545e-01	ci left: 2.273688e-02	ci right 2.710273e-02	k: 497	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
CCNF   20000 perm   7 sec   (3012 perm/sec)   p_kst 5.000000e-05   p_cons 2.485000e-02   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 1.431066e-01	ci left: 2.265144e-02	ci right 2.617482e-02	k: 731	n:30000
KS ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
CCNF   30000 perm   9 sec   (3358 perm/sec)   p_kst 3.333333e-05   p_cons 2.436667e-02   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 1.247226e-01	ci left: 2.259499e-02	ci right 2.562464e-02	k: 963	n:40000
KS ci ratio: 2.263100e+00	ci left: 6.055289e-06	ci right 1.806054e-04	k: 2	n:40000
CCNF   40000 perm   11 sec   (3500 perm/sec)   p_kst 5.000000e-05   p_cons 2.407500e-02   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 1.096587e-01	ci left: 2.355184e-02	ci right 2.630370e-02	k: 1245	n:50000
KS ci ratio: 2.263123e+00	ci left: 4.844222e-06	ci right 1.444862e-04	k: 2	n:50000
CCNF   50000 perm   14 sec   (3579 perm/sec)   p_kst 4.000000e-05   p_cons 2.490000e-02   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 1.006302e-01	ci left: 2.342402e-02	ci right 2.592225e-02	k: 1479	n:60000
KS ci ratio: 2.263138e+00	ci left: 4.036847e-06	ci right 1.204062e-04	k: 2	n:60000
CCNF   60000 perm   16 sec   (3641 perm/sec)   p_kst 3.333333e-05   p_cons 2.465000e-02   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 9.260800e-02	ci left: 2.380016e-02	ci right 2.612516e-02	k: 1746	n:70000
KS ci ratio: 2.263148e+00	ci left: 3.460151e-06	ci right 1.032060e-04	k: 2	n:70000
CCNF   70000 perm   19 sec   (3692 perm/sec)   p_kst 2.857143e-05   p_cons 2.494286e-02   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 8.697540e-02	ci left: 2.368442e-02	ci right 2.585023e-02	k: 1980	n:80000
KS ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
CCNF   80000 perm   22 sec   (3718 perm/sec)   p_kst 1.250000e-05   p_cons 2.475000e-02   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 8.178748e-02	ci left: 2.386999e-02	ci right 2.591634e-02	k: 2239	n:90000
KS ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
CCNF   90000 perm   24 sec   (3717 perm/sec)   p_kst 1.111111e-05   p_cons 2.487778e-02   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 7.741343e-02	ci left: 2.403133e-02	ci right 2.597635e-02	k: 2499	n:100000
KS ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
CCNF   100000 perm   27 sec   (3661 perm/sec)   p_kst 1.000000e-05   p_cons 2.499000e-02   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 7.378333e-02	ci left: 2.409430e-02	ci right 2.594904e-02	k: 2751	n:110000
KS ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
CCNF   110000 perm   30 sec   (3630 perm/sec)   p_kst 9.090909e-06   p_cons 2.500909e-02   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 7.045205e-02	ci left: 2.426321e-02	ci right 2.604317e-02	k: 3017	n:120000
KS ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
CCNF   120000 perm   33 sec   (3588 perm/sec)   p_kst 8.333333e-06   p_cons 2.514167e-02   p_joint 0

Joint ci ratio: 6.443498e-01	ci left: 1.939608e-04	ci right 3.833579e-04	k: 36	n:130000
Cons ci ratio: 6.758750e-02	ci left: 2.436990e-02	ci right 2.608214e-02	k: 3278	n:130000
KS ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
CCNF   130000 perm   38 sec   (3435 perm/sec)   p_kst 7.692308e-06   p_cons 2.521538e-02   p_joint 2.769231e-04

Joint ci ratio: 7.039723e-01	ci left: 1.445822e-04	ci right 3.058922e-04	k: 30	n:140000
Cons ci ratio: 6.489585e-02	ci left: 2.457507e-02	ci right 2.623038e-02	k: 3555	n:140000
KS ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
CCNF   140000 perm   41 sec   (3378 perm/sec)   p_kst 7.142857e-06   p_cons 2.539286e-02   p_joint 2.142857e-04

Joint ci ratio: 6.625214e-01	ci left: 1.569782e-04	ci right 3.167297e-04	k: 34	n:150000
Cons ci ratio: 6.263635e-02	ci left: 2.464902e-02	ci right 2.624939e-02	k: 3816	n:150000
KS ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
CCNF   150000 perm   45 sec   (3312 perm/sec)   p_kst 6.666667e-06   p_cons 2.544000e-02   p_joint 2.266667e-04

Joint ci ratio: 6.532578e-01	ci left: 1.523720e-04	ci right 3.042153e-04	k: 35	n:160000
Cons ci ratio: 6.074289e-02	ci left: 2.459760e-02	ci right 2.614466e-02	k: 4058	n:160000
KS ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
CCNF   160000 perm   49 sec   (3287 perm/sec)   p_kst 6.250000e-06   p_cons 2.536250e-02   p_joint 2.187500e-04

Joint ci ratio: 6.532622e-01	ci left: 1.434087e-04	ci right 2.863210e-04	k: 35	n:170000
Cons ci ratio: 5.900432e-02	ci left: 2.455868e-02	ci right 2.605757e-02	k: 4301	n:170000
KS ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
CCNF   170000 perm   52 sec   (3274 perm/sec)   p_kst 5.882353e-06   p_cons 2.530000e-02   p_joint 2.058824e-04

Joint ci ratio: 8.553619e-01	ci left: 6.787083e-05	ci right 1.715969e-04	k: 20	n:180000
Cons ci ratio: 5.716229e-02	ci left: 2.473281e-02	ci right 2.619364e-02	k: 4582	n:180000
KS ci ratio: 2.771835e+00	ci left: 1.406545e-07	ci right 3.095318e-05	k: 1	n:180000
CCNF   180000 perm   55 sec   (3259 perm/sec)   p_kst 5.555556e-06   p_cons 2.545556e-02   p_joint 1.111111e-04

Joint ci ratio: 8.764902e-01	ci left: 6.020757e-05	ci right 1.561580e-04	k: 19	n:190000
Cons ci ratio: 5.581322e-02	ci left: 2.459852e-02	ci right 2.601602e-02	k: 4807	n:190000
KS ci ratio: 2.771837e+00	ci left: 1.332516e-07	ci right 2.932409e-05	k: 1	n:190000
CCNF   190000 perm   59 sec   (3243 perm/sec)   p_kst 5.263158e-06   p_cons 2.530000e-02   p_joint 1.000000e-04

Joint ci ratio: 8.553671e-01	ci left: 6.108363e-05	ci right 1.544377e-04	k: 20	n:200000
Cons ci ratio: 5.431228e-02	ci left: 2.469510e-02	ci right 2.607870e-02	k: 5076	n:200000
KS ci ratio: 2.771838e+00	ci left: 1.265890e-07	ci right 2.785790e-05	k: 1	n:200000
CCNF   200000 perm   63 sec   (3195 perm/sec)   p_kst 5.000000e-06   p_cons 2.538000e-02   p_joint 1.000000e-04

Joint ci ratio: 8.357010e-01	ci left: 6.190261e-05	ci right 1.528566e-04	k: 21	n:210000
Cons ci ratio: 5.313056e-02	ci left: 2.459494e-02	ci right 2.594202e-02	k: 5305	n:210000
KS ci ratio: 2.771839e+00	ci left: 1.205610e-07	ci right 2.653135e-05	k: 1	n:210000
CCNF   210000 perm   66 sec   (3172 perm/sec)   p_kst 4.761905e-06   p_cons 2.526190e-02   p_joint 1.000000e-04

Joint ci ratio: 7.407615e-01	ci left: 8.087955e-05	ci right 1.785568e-04	k: 27	n:220000
Cons ci ratio: 5.183094e-02	ci left: 2.468370e-02	ci right 2.600158e-02	k: 5574	n:220000
KS ci ratio: 2.771840e+00	ci left: 1.150809e-07	ci right 2.532539e-05	k: 1	n:220000
CCNF   220000 perm   70 sec   (3148 perm/sec)   p_kst 4.545455e-06   p_cons 2.533636e-02   p_joint 1.227273e-04

Joint ci ratio: 7.278783e-01	ci left: 8.089624e-05	ci right 1.759422e-04	k: 28	n:230000
Cons ci ratio: 5.071581e-02	ci left: 2.467492e-02	ci right 2.596316e-02	k: 5822	n:230000
KS ci ratio: 2.771841e+00	ci left: 1.100774e-07	ci right 2.422430e-05	k: 1	n:230000
CCNF   230000 perm   74 sec   (3116 perm/sec)   p_kst 4.347826e-06   p_cons 2.531304e-02   p_joint 1.217391e-04

Joint ci ratio: 7.839575e-01	ci left: 6.407290e-05	ci right 1.487884e-04	k: 24	n:240000
Cons ci ratio: 4.964034e-02	ci left: 2.469598e-02	ci right 2.595719e-02	k: 6077	n:240000
KS ci ratio: 2.263194e+00	ci left: 1.009207e-06	ci right 3.010254e-05	k: 2	n:240000
CCNF   240000 perm   78 sec   (3091 perm/sec)   p_kst 8.333333e-06   p_cons 2.532083e-02   p_joint 1.000000e-04

Joint ci ratio: 7.687337e-01	ci left: 6.471574e-05	ci right 1.476162e-04	k: 25	n:250000
Cons ci ratio: 4.868575e-02	ci left: 2.466028e-02	ci right 2.589476e-02	k: 6318	n:250000
KS ci ratio: 2.263195e+00	ci left: 9.688386e-07	ci right 2.889845e-05	k: 2	n:250000
CCNF   250000 perm   82 sec   (3066 perm/sec)   p_kst 8.000000e-06   p_cons 2.527200e-02   p_joint 1.000000e-04

Joint ci ratio: 7.543637e-01	ci left: 6.532433e-05	ci right 1.465198e-04	k: 26	n:260000
Cons ci ratio: 4.772452e-02	ci left: 2.468836e-02	ci right 2.589918e-02	k: 6575	n:260000
KS ci ratio: 2.263196e+00	ci left: 9.315755e-07	ci right 2.778698e-05	k: 2	n:260000
CCNF   260000 perm   86 sec   (3019 perm/sec)   p_kst 7.692308e-06   p_cons 2.528846e-02   p_joint 1.000000e-04

Joint ci ratio: 7.687368e-01	ci left: 5.992191e-05	ci right 1.366819e-04	k: 25	n:270000
Cons ci ratio: 4.687792e-02	ci left: 2.465234e-02	ci right 2.583936e-02	k: 6815	n:270000
KS ci ratio: 2.263196e+00	ci left: 8.970727e-07	ci right 2.675784e-05	k: 2	n:270000
CCNF   270000 perm   91 sec   (2976 perm/sec)   p_kst 7.407407e-06   p_cons 2.524074e-02   p_joint 9.259259e-05

Joint ci ratio: 7.687382e-01	ci left: 5.778181e-05	ci right 1.318005e-04	k: 25	n:280000
Cons ci ratio: 4.597467e-02	ci left: 2.472501e-02	ci right 2.589199e-02	k: 7085	n:280000
KS ci ratio: 2.263197e+00	ci left: 8.650343e-07	ci right 2.580222e-05	k: 2	n:280000
CCNF   280000 perm   95 sec   (2935 perm/sec)   p_kst 7.142857e-06   p_cons 2.530357e-02   p_joint 8.928571e-05

Joint ci ratio: 7.543679e-01	ci left: 5.856654e-05	ci right 1.313629e-04	k: 26	n:290000
Cons ci ratio: 4.522905e-02	ci left: 2.467692e-02	ci right 2.582225e-02	k: 7321	n:290000
KS ci ratio: 2.263197e+00	ci left: 8.352055e-07	ci right 2.491249e-05	k: 2	n:290000
CCNF   290000 perm   99 sec   (2915 perm/sec)   p_kst 6.896552e-06   p_cons 2.524483e-02   p_joint 8.965517e-05

Joint ci ratio: 7.278893e-01	ci left: 6.202019e-05	ci right 1.348899e-04	k: 28	n:300000
Cons ci ratio: 4.441619e-02	ci left: 2.474429e-02	ci right 2.587157e-02	k: 7591	n:300000
KS ci ratio: 2.263198e+00	ci left: 8.073653e-07	ci right 2.408208e-05	k: 2	n:300000
CCNF   300000 perm   104 sec   (2893 perm/sec)   p_kst 6.666667e-06   p_cons 2.530333e-02   p_joint 9.333333e-05

Joint ci ratio: 8.357158e-01	ci left: 4.193380e-05	ci right 1.035489e-04	k: 21	n:310000
Cons ci ratio: 4.367413e-02	ci left: 2.477557e-02	ci right 2.588494e-02	k: 7851	n:310000
KS ci ratio: 2.263198e+00	ci left: 7.813212e-07	ci right 2.330525e-05	k: 2	n:310000
CCNF   310000 perm   108 sec   (2872 perm/sec)   p_kst 6.451613e-06   p_cons 2.532581e-02   p_joint 6.774194e-05

Joint ci ratio: 8.357168e-01	ci left: 4.062335e-05	ci right 1.003130e-04	k: 21	n:320000
Cons ci ratio: 4.304435e-02	ci left: 2.471845e-02	ci right 2.580892e-02	k: 8083	n:320000
KS ci ratio: 2.263199e+00	ci left: 7.569049e-07	ci right 2.257696e-05	k: 2	n:320000
CCNF   320000 perm   112 sec   (2849 perm/sec)   p_kst 6.250000e-06   p_cons 2.525938e-02   p_joint 6.562500e-05

Joint ci ratio: 8.357177e-01	ci left: 3.939233e-05	ci right 9.727331e-05	k: 21	n:330000
Cons ci ratio: 4.239399e-02	ci left: 2.471889e-02	ci right 2.579250e-02	k: 8333	n:330000
KS ci ratio: 2.263199e+00	ci left: 7.339684e-07	ci right 2.189282e-05	k: 2	n:330000
CCNF   330000 perm   117 sec   (2817 perm/sec)   p_kst 6.060606e-06   p_cons 2.525152e-02   p_joint 6.363636e-05

Joint ci ratio: 8.765116e-01	ci left: 3.364515e-05	ci right 8.726585e-05	k: 19	n:340000
Cons ci ratio: 4.172739e-02	ci left: 2.477182e-02	ci right 2.583041e-02	k: 8601	n:340000
KS ci ratio: 2.263200e+00	ci left: 7.123810e-07	ci right 2.124892e-05	k: 2	n:340000
CCNF   340000 perm   122 sec   (2796 perm/sec)   p_kst 5.882353e-06   p_cons 2.529706e-02   p_joint 5.588235e-05

Joint ci ratio: 8.765124e-01	ci left: 3.268385e-05	ci right 8.477258e-05	k: 19	n:350000
Cons ci ratio: 4.114843e-02	ci left: 2.475397e-02	ci right 2.579677e-02	k: 8845	n:350000
KS ci ratio: 2.263200e+00	ci left: 6.920273e-07	ci right 2.064181e-05	k: 2	n:350000
CCNF   350000 perm   126 sec   (2775 perm/sec)   p_kst 5.714286e-06   p_cons 2.527143e-02   p_joint 5.428571e-05

Joint ci ratio: 8.553880e-01	ci left: 3.393510e-05	ci right 8.579975e-05	k: 20	n:360000
Cons ci ratio: 4.061813e-02	ci left: 2.470695e-02	ci right 2.573404e-02	k: 9078	n:360000
KS ci ratio: 2.263200e+00	ci left: 6.728043e-07	ci right 2.006843e-05	k: 2	n:360000
CCNF   360000 perm   131 sec   (2753 perm/sec)   p_kst 5.555556e-06   p_cons 2.521667e-02   p_joint 5.555556e-05

Joint ci ratio: 8.765138e-01	ci left: 3.091714e-05	ci right 8.019034e-05	k: 19	n:370000
Cons ci ratio: 4.005490e-02	ci left: 2.472679e-02	ci right 2.574012e-02	k: 9335	n:370000
KS ci ratio: 2.263201e+00	ci left: 6.546203e-07	ci right 1.952605e-05	k: 2	n:370000
CCNF   370000 perm   135 sec   (2732 perm/sec)   p_kst 5.405405e-06   p_cons 2.522973e-02   p_joint 5.135135e-05

Joint ci ratio: 8.765144e-01	ci left: 3.010353e-05	ci right 7.808010e-05	k: 19	n:380000
Cons ci ratio: 3.952715e-02	ci left: 2.473004e-02	ci right 2.572985e-02	k: 9586	n:380000
KS ci ratio: 2.263201e+00	ci left: 6.373935e-07	ci right 1.901221e-05	k: 2	n:380000
CCNF   380000 perm   140 sec   (2712 perm/sec)   p_kst 5.263158e-06   p_cons 2.522632e-02   p_joint 5.000000e-05

Joint ci ratio: 8.765150e-01	ci left: 2.933163e-05	ci right 7.607807e-05	k: 19	n:390000
Cons ci ratio: 3.898518e-02	ci left: 2.477638e-02	ci right 2.576402e-02	k: 9854	n:390000
KS ci ratio: 2.263201e+00	ci left: 6.210500e-07	ci right 1.852472e-05	k: 2	n:390000
CCNF   390000 perm   145 sec   (2691 perm/sec)   p_kst 5.128205e-06   p_cons 2.526667e-02   p_joint 4.871795e-05

Joint ci ratio: 8.553906e-01	ci left: 3.054156e-05	ci right 7.721989e-05	k: 20	n:400000
Cons ci ratio: 3.851960e-02	ci left: 2.475115e-02	ci right 2.572574e-02	k: 10094	n:400000
KS ci ratio: 2.263202e+00	ci left: 6.055238e-07	ci right 1.806160e-05	k: 2	n:400000
CCNF   400000 perm   150 sec   (2666 perm/sec)   p_kst 5.000000e-06   p_cons 2.523500e-02   p_joint 5.000000e-05

Joint ci ratio: 8.765162e-01	ci left: 2.790081e-05	ci right 7.236699e-05	k: 19	n:410000
Cons ci ratio: 3.802881e-02	ci left: 2.478038e-02	ci right 2.574342e-02	k: 10356	n:410000
KS ci ratio: 2.263202e+00	ci left: 5.907549e-07	ci right 1.762108e-05	k: 2	n:410000
CCNF   410000 perm   155 sec   (2645 perm/sec)   p_kst 4.878049e-06   p_cons 2.525854e-02   p_joint 4.634146e-05

Joint ci ratio: 8.765167e-01	ci left: 2.723650e-05	ci right 7.064399e-05	k: 19	n:420000
Cons ci ratio: 3.757265e-02	ci left: 2.478706e-02	ci right 2.573855e-02	k: 10609	n:420000
KS ci ratio: 2.263202e+00	ci left: 5.766893e-07	ci right 1.720153e-05	k: 2	n:420000
CCNF   420000 perm   160 sec   (2617 perm/sec)   p_kst 4.761905e-06   p_cons 2.525952e-02   p_joint 4.523810e-05

Joint ci ratio: 8.553922e-01	ci left: 2.841073e-05	ci right 7.183253e-05	k: 20	n:430000
Cons ci ratio: 3.713954e-02	ci left: 2.478428e-02	ci right 2.572446e-02	k: 10858	n:430000
KS ci ratio: 1.959989e+00	ci left: 1.438775e-06	ci right 2.038887e-05	k: 3	n:430000
CCNF   430000 perm   166 sec   (2592 perm/sec)   p_kst 6.976744e-06   p_cons 2.525116e-02   p_joint 4.651163e-05

Joint ci ratio: 8.553927e-01	ci left: 2.776503e-05	ci right 7.019999e-05	k: 20	n:440000
Cons ci ratio: 3.671937e-02	ci left: 2.478393e-02	ci right 2.571324e-02	k: 11108	n:440000
KS ci ratio: 1.959989e+00	ci left: 1.406075e-06	ci right 1.992549e-05	k: 3	n:440000
CCNF   440000 perm   171 sec   (2567 perm/sec)   p_kst 6.818182e-06   p_cons 2.524545e-02   p_joint 4.545455e-05

Joint ci ratio: 8.553932e-01	ci left: 2.714803e-05	ci right 6.864001e-05	k: 20	n:450000
Cons ci ratio: 3.628203e-02	ci left: 2.482551e-02	ci right 2.574506e-02	k: 11377	n:450000
KS ci ratio: 1.959989e+00	ci left: 1.374829e-06	ci right 1.948270e-05	k: 3	n:450000
CCNF   450000 perm   177 sec   (2544 perm/sec)   p_kst 6.666667e-06   p_cons 2.528222e-02   p_joint 4.444444e-05

Joint ci ratio: 8.553937e-01	ci left: 2.655785e-05	ci right 6.714785e-05	k: 20	n:460000
Cons ci ratio: 3.588367e-02	ci left: 2.483302e-02	ci right 2.574254e-02	k: 11631	n:460000
KS ci ratio: 1.959989e+00	ci left: 1.344941e-06	ci right 1.905917e-05	k: 3	n:460000
CCNF   460000 perm   182 sec   (2523 perm/sec)   p_kst 6.521739e-06   p_cons 2.528478e-02   p_joint 4.347826e-05

Joint ci ratio: 8.553941e-01	ci left: 2.599278e-05	ci right 6.571919e-05	k: 20	n:470000
Cons ci ratio: 3.554573e-02	ci left: 2.477488e-02	ci right 2.567354e-02	k: 11854	n:470000
KS ci ratio: 1.959990e+00	ci left: 1.316326e-06	ci right 1.865366e-05	k: 3	n:470000
CCNF   470000 perm   188 sec   (2504 perm/sec)   p_kst 6.382979e-06   p_cons 2.522128e-02   p_joint 4.255319e-05

Joint ci ratio: 8.553945e-01	ci left: 2.545126e-05	ci right 6.435006e-05	k: 20	n:480000
Cons ci ratio: 3.519325e-02	ci left: 2.475224e-02	ci right 2.564100e-02	k: 12093	n:480000
KS ci ratio: 1.959990e+00	ci left: 1.288902e-06	ci right 1.826504e-05	k: 3	n:480000
CCNF   480000 perm   193 sec   (2485 perm/sec)   p_kst 6.250000e-06   p_cons 2.519375e-02   p_joint 4.166667e-05

Joint ci ratio: 8.553949e-01	ci left: 2.493185e-05	ci right 6.303681e-05	k: 20	n:490000
Cons ci ratio: 3.481920e-02	ci left: 2.477509e-02	ci right 2.565503e-02	k: 12354	n:490000
KS ci ratio: 1.959990e+00	ci left: 1.262598e-06	ci right 1.789229e-05	k: 3	n:490000
CCNF   490000 perm   199 sec   (2464 perm/sec)   p_kst 6.122449e-06   p_cons 2.521224e-02   p_joint 4.081633e-05

Joint ci ratio: 8.553953e-01	ci left: 2.443320e-05	ci right 6.177608e-05	k: 20	n:500000
Cons ci ratio: 3.446805e-02	ci left: 2.478120e-02	ci right 2.565231e-02	k: 12607	n:500000
KS ci ratio: 1.959990e+00	ci left: 1.237346e-06	ci right 1.753445e-05	k: 3	n:500000
CCNF   500000 perm   205 sec   (2443 perm/sec)   p_kst 6.000000e-06   p_cons 2.521400e-02   p_joint 4.000000e-05

Joint ci ratio: 8.357280e-01	ci left: 2.548906e-05	ci right 6.294192e-05	k: 21	n:510000
Cons ci ratio: 3.413412e-02	ci left: 2.477740e-02	ci right 2.563977e-02	k: 12855	n:510000
KS ci ratio: 1.753067e+00	ci left: 2.136995e-06	ci right 2.008142e-05	k: 4	n:510000
CCNF   510000 perm   211 sec   (2420 perm/sec)   p_kst 7.843137e-06   p_cons 2.520588e-02   p_joint 4.117647e-05

Joint ci ratio: 8.001474e-01	ci left: 2.803871e-05	ci right 6.636714e-05	k: 23	n:520000
Cons ci ratio: 3.379781e-02	ci left: 2.479095e-02	ci right 2.564512e-02	k: 13112	n:520000
KS ci ratio: 1.753067e+00	ci left: 2.095899e-06	ci right 1.969524e-05	k: 4	n:520000
CCNF   520000 perm   217 sec   (2392 perm/sec)   p_kst 7.692308e-06   p_cons 2.521538e-02   p_joint 4.423077e-05

Joint ci ratio: 8.001478e-01	ci left: 2.750968e-05	ci right 6.511494e-05	k: 23	n:530000
Cons ci ratio: 3.350854e-02	ci left: 2.474975e-02	ci right 2.559507e-02	k: 13340	n:530000
KS ci ratio: 1.753067e+00	ci left: 2.056353e-06	ci right 1.932364e-05	k: 4	n:530000
CCNF   530000 perm   224 sec   (2370 perm/sec)   p_kst 7.547170e-06   p_cons 2.516981e-02   p_joint 4.339623e-05

Joint ci ratio: 7.839811e-01	ci left: 2.847660e-05	ci right 6.612909e-05	k: 24	n:540000
Cons ci ratio: 3.318020e-02	ci left: 2.477808e-02	ci right 2.561591e-02	k: 13605	n:540000
KS ci ratio: 1.753068e+00	ci left: 2.018273e-06	ci right 1.896580e-05	k: 4	n:540000
CCNF   540000 perm   230 sec   (2351 perm/sec)   p_kst 7.407407e-06   p_cons 2.519444e-02   p_joint 4.444444e-05

Joint ci ratio: 7.839815e-01	ci left: 2.795884e-05	ci right 6.492676e-05	k: 24	n:550000
Cons ci ratio: 3.287835e-02	ci left: 2.478016e-02	ci right 2.561030e-02	k: 13856	n:550000
KS ci ratio: 1.753068e+00	ci left: 1.981577e-06	ci right 1.862096e-05	k: 4	n:550000
CCNF   550000 perm   237 sec   (2322 perm/sec)   p_kst 7.272727e-06   p_cons 2.519273e-02   p_joint 4.363636e-05

Joint ci ratio: 7.839818e-01	ci left: 2.745957e-05	ci right 6.376736e-05	k: 24	n:560000
Cons ci ratio: 3.257394e-02	ci left: 2.479815e-02	ci right 2.562106e-02	k: 14116	n:560000
KS ci ratio: 1.753068e+00	ci left: 1.946191e-06	ci right 1.828845e-05	k: 4	n:560000
CCNF   560000 perm   245 sec   (2290 perm/sec)   p_kst 7.142857e-06   p_cons 2.520714e-02   p_joint 4.285714e-05

Joint ci ratio: 7.687570e-01	ci left: 2.838385e-05	ci right 6.474482e-05	k: 25	n:570000
Cons ci ratio: 3.229396e-02	ci left: 2.479117e-02	ci right 2.560664e-02	k: 14362	n:570000
KS ci ratio: 1.753068e+00	ci left: 1.912048e-06	ci right 1.796760e-05	k: 4	n:570000
CCNF   570000 perm   251 sec   (2273 perm/sec)   p_kst 7.017544e-06   p_cons 2.519649e-02   p_joint 4.385965e-05

Joint ci ratio: 8.173596e-01	ci left: 2.377133e-05	ci right 5.742748e-05	k: 22	n:580000
Cons ci ratio: 3.364793e-02	ci left: 2.248065e-02	ci right 2.325171e-02	k: 13261	n:580000
KS ci ratio: 1.753068e+00	ci left: 1.879081e-06	ci right 1.765782e-05	k: 4	n:580000
CCNF   580000 perm   257 sec   (2257 perm/sec)   p_kst 6.896552e-06   p_cons 2.286379e-02   p_joint 3.793103e-05

Joint ci ratio: 9.239380e-01	ci left: 1.678505e-05	ci right 4.613290e-05	k: 17	n:590000
Cons ci ratio: 3.334342e-02	ci left: 2.250804e-02	ci right 2.327293e-02	k: 13504	n:590000
KS ci ratio: 1.753068e+00	ci left: 1.847232e-06	ci right 1.735853e-05	k: 4	n:590000
CCNF   590000 perm   264 sec   (2231 perm/sec)   p_kst 6.779661e-06   p_cons 2.288814e-02   p_joint 2.881356e-05

Joint ci ratio: 9.239382e-01	ci left: 1.650529e-05	ci right 4.536403e-05	k: 17	n:600000
Cons ci ratio: 3.303106e-02	ci left: 2.255604e-02	ci right 2.331524e-02	k: 13760	n:600000
KS ci ratio: 1.753069e+00	ci left: 1.816445e-06	ci right 1.706923e-05	k: 4	n:600000
CCNF   600000 perm   271 sec   (2213 perm/sec)   p_kst 6.666667e-06   p_cons 2.293333e-02   p_joint 2.833333e-05

Joint ci ratio: 9.239385e-01	ci left: 1.623471e-05	ci right 4.462036e-05	k: 17	n:610000
Cons ci ratio: 3.275482e-02	ci left: 2.256510e-02	ci right 2.331813e-02	k: 13993	n:610000
KS ci ratio: 1.753069e+00	ci left: 1.786667e-06	ci right 1.678940e-05	k: 4	n:610000
CCNF   610000 perm   278 sec   (2197 perm/sec)   p_kst 6.557377e-06   p_cons 2.293934e-02   p_joint 2.786885e-05

Joint ci ratio: 9.239387e-01	ci left: 1.597286e-05	ci right 4.390068e-05	k: 17	n:620000
Cons ci ratio: 3.250060e-02	ci left: 2.255309e-02	ci right 2.329977e-02	k: 14213	n:620000
KS ci ratio: 1.753069e+00	ci left: 1.757850e-06	ci right 1.651861e-05	k: 4	n:620000
CCNF   620000 perm   284 sec   (2182 perm/sec)   p_kst 6.451613e-06   p_cons 2.292419e-02   p_joint 2.741935e-05

Joint ci ratio: 8.992954e-01	ci left: 1.693332e-05	ci right 4.515480e-05	k: 18	n:630000
Cons ci ratio: 3.225564e-02	ci left: 2.253675e-02	ci right 2.327717e-02	k: 14430	n:630000
KS ci ratio: 1.753069e+00	ci left: 1.729948e-06	ci right 1.625641e-05	k: 4	n:630000
CCNF   630000 perm   292 sec   (2157 perm/sec)   p_kst 6.349206e-06   p_cons 2.290476e-02   p_joint 2.857143e-05

Joint ci ratio: 8.765243e-01	ci left: 1.787391e-05	ci right 4.636032e-05	k: 19	n:640000
Cons ci ratio: 3.199713e-02	ci left: 2.254731e-02	ci right 2.328202e-02	k: 14664	n:640000
KS ci ratio: 1.753069e+00	ci left: 1.702917e-06	ci right 1.600240e-05	k: 4	n:640000
CCNF   640000 perm   299 sec   (2142 perm/sec)   p_kst 6.250000e-06   p_cons 2.291250e-02   p_joint 2.968750e-05

Joint ci ratio: 8.765245e-01	ci left: 1.759892e-05	ci right 4.564709e-05	k: 19	n:650000
Cons ci ratio: 3.176549e-02	ci left: 2.252855e-02	ci right 2.325725e-02	k: 14879	n:650000
KS ci ratio: 1.753069e+00	ci left: 1.676718e-06	ci right 1.575621e-05	k: 4	n:650000
CCNF   650000 perm   306 sec   (2126 perm/sec)   p_kst 6.153846e-06   p_cons 2.289077e-02   p_joint 2.923077e-05

Joint ci ratio: 8.553999e-01	ci left: 1.850997e-05	ci right 4.680019e-05	k: 20	n:660000
Cons ci ratio: 3.151957e-02	ci left: 2.253745e-02	ci right 2.326069e-02	k: 15112	n:660000
KS ci ratio: 1.753069e+00	ci left: 1.651314e-06	ci right 1.551749e-05	k: 4	n:660000
CCNF   660000 perm   313 sec   (2111 perm/sec)   p_kst 6.060606e-06   p_cons 2.289697e-02   p_joint 3.030303e-05

Joint ci ratio: 8.554001e-01	ci left: 1.823370e-05	ci right 4.610168e-05	k: 20	n:670000
Cons ci ratio: 3.128553e-02	ci left: 2.253722e-02	ci right 2.325498e-02	k: 15339	n:670000
KS ci ratio: 1.753069e+00	ci left: 1.626667e-06	ci right 1.528588e-05	k: 4	n:670000
CCNF   670000 perm   320 sec   (2095 perm/sec)   p_kst 5.970149e-06   p_cons 2.289403e-02   p_joint 2.985075e-05

Joint ci ratio: 8.554003e-01	ci left: 1.796556e-05	ci right 4.542372e-05	k: 20	n:680000
Cons ci ratio: 3.105153e-02	ci left: 2.254430e-02	ci right 2.325683e-02	k: 15571	n:680000
KS ci ratio: 1.753070e+00	ci left: 1.602745e-06	ci right 1.506109e-05	k: 4	n:680000
CCNF   680000 perm   327 sec   (2078 perm/sec)   p_kst 5.882353e-06   p_cons 2.289853e-02   p_joint 2.941176e-05

Joint ci ratio: 8.554005e-01	ci left: 1.770519e-05	ci right 4.476541e-05	k: 20	n:690000
Cons ci ratio: 3.079480e-02	ci left: 2.259148e-02	ci right 2.329949e-02	k: 15831	n:690000
KS ci ratio: 1.753070e+00	ci left: 1.579517e-06	ci right 1.484282e-05	k: 4	n:690000
CCNF   690000 perm   335 sec   (2062 perm/sec)   p_kst 5.797101e-06   p_cons 2.294348e-02   p_joint 2.898551e-05

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.269814e-06	k: 0	n:700000
Cons ci ratio: 3.059008e-02	ci left: 2.257069e-02	ci right 2.327326e-02	k: 16044	n:700000
KS ci ratio: 2.771853e+00	ci left: 3.616830e-08	ci right 7.959465e-06	k: 1	n:700000
CCNF   700000 perm   342 sec   (2048 perm/sec)   p_kst 1.428571e-06   p_cons 2.292000e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.195591e-06	k: 0	n:710000
Cons ci ratio: 3.037888e-02	ci left: 2.256588e-02	ci right 2.326337e-02	k: 16268	n:710000
KS ci ratio: 2.771853e+00	ci left: 3.565888e-08	ci right 7.847360e-06	k: 1	n:710000
CCNF   710000 perm   350 sec   (2029 perm/sec)   p_kst 1.408451e-06   p_cons 2.291268e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.123431e-06	k: 0	n:720000
Cons ci ratio: 3.015795e-02	ci left: 2.258190e-02	ci right 2.327472e-02	k: 16507	n:720000
KS ci ratio: 2.771853e+00	ci left: 3.516362e-08	ci right 7.738369e-06	k: 1	n:720000
CCNF   720000 perm   357 sec   (2015 perm/sec)   p_kst 1.388889e-06   p_cons 2.292639e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.053247e-06	k: 0	n:730000
Cons ci ratio: 2.995277e-02	ci left: 2.258118e-02	ci right 2.326918e-02	k: 16734	n:730000
KS ci ratio: 2.771853e+00	ci left: 3.468193e-08	ci right 7.632364e-06	k: 1	n:730000
CCNF   730000 perm   365 sec   (2001 perm/sec)   p_kst 1.369863e-06   p_cons 2.292329e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.984960e-06	k: 0	n:740000
Cons ci ratio: 2.977598e-02	ci left: 2.254428e-02	ci right 2.322703e-02	k: 16934	n:740000
KS ci ratio: 2.771853e+00	ci left: 3.421325e-08	ci right 7.529225e-06	k: 1	n:740000
CCNF   740000 perm   372 sec   (1987 perm/sec)   p_kst 1.351351e-06   p_cons 2.288378e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.918494e-06	k: 0	n:750000
Cons ci ratio: 2.958726e-02	ci left: 2.253087e-02	ci right 2.320882e-02	k: 17151	n:750000
KS ci ratio: 2.771853e+00	ci left: 3.375708e-08	ci right 7.428835e-06	k: 1	n:750000
CCNF   750000 perm   380 sec   (1972 perm/sec)   p_kst 1.333333e-06   p_cons 2.286800e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.853777e-06	k: 0	n:760000
Cons ci ratio: 2.937700e-02	ci left: 2.255572e-02	ci right 2.322951e-02	k: 17397	n:760000
KS ci ratio: 2.771853e+00	ci left: 3.331290e-08	ci right 7.331088e-06	k: 1	n:760000
CCNF   760000 perm   388 sec   (1958 perm/sec)   p_kst 1.315789e-06   p_cons 2.289079e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.790741e-06	k: 0	n:770000
Cons ci ratio: 2.918216e-02	ci left: 2.256317e-02	ci right 2.323264e-02	k: 17630	n:770000
KS ci ratio: 2.771853e+00	ci left: 3.288027e-08	ci right 7.235879e-06	k: 1	n:770000
CCNF   770000 perm   396 sec   (1944 perm/sec)   p_kst 1.298701e-06   p_cons 2.289610e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.729321e-06	k: 0	n:780000
Cons ci ratio: 2.899281e-02	ci left: 2.256790e-02	ci right 2.323309e-02	k: 17861	n:780000
KS ci ratio: 2.771853e+00	ci left: 3.245873e-08	ci right 7.143112e-06	k: 1	n:780000
CCNF   780000 perm   404 sec   (1931 perm/sec)   p_kst 1.282051e-06   p_cons 2.289872e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.669457e-06	k: 0	n:790000
Cons ci ratio: 2.879488e-02	ci left: 2.259137e-02	ci right 2.325264e-02	k: 18107	n:790000
KS ci ratio: 2.771853e+00	ci left: 3.204786e-08	ci right 7.052693e-06	k: 1	n:790000
CCNF   790000 perm   412 sec   (1918 perm/sec)   p_kst 1.265823e-06   p_cons 2.292025e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.611089e-06	k: 0	n:800000
Cons ci ratio: 2.861053e-02	ci left: 2.259938e-02	ci right 2.325658e-02	k: 18341	n:800000
KS ci ratio: 2.771853e+00	ci left: 3.164726e-08	ci right 6.964534e-06	k: 1	n:800000
CCNF   800000 perm   420 sec   (1905 perm/sec)   p_kst 1.250000e-06   p_cons 2.292625e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.554162e-06	k: 0	n:810000
Cons ci ratio: 2.844927e-02	ci left: 2.257656e-02	ci right 2.322933e-02	k: 18550	n:810000
KS ci ratio: 2.771853e+00	ci left: 3.125655e-08	ci right 6.878553e-06	k: 1	n:810000
CCNF   810000 perm   428 sec   (1892 perm/sec)   p_kst 1.234568e-06   p_cons 2.290123e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.498623e-06	k: 0	n:820000
Cons ci ratio: 2.825527e-02	ci left: 2.261001e-02	ci right 2.325922e-02	k: 18805	n:820000
KS ci ratio: 2.771854e+00	ci left: 3.087538e-08	ci right 6.794668e-06	k: 1	n:820000
CCNF   820000 perm   436 sec   (1880 perm/sec)   p_kst 1.219512e-06   p_cons 2.293293e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.444423e-06	k: 0	n:830000
Cons ci ratio: 2.808254e-02	ci left: 2.261515e-02	ci right 2.326047e-02	k: 19037	n:830000
KS ci ratio: 2.771854e+00	ci left: 3.050338e-08	ci right 6.712805e-06	k: 1	n:830000
CCNF   830000 perm   445 sec   (1867 perm/sec)   p_kst 1.204819e-06   p_cons 2.293614e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.391514e-06	k: 0	n:840000
Cons ci ratio: 2.791812e-02	ci left: 2.261191e-02	ci right 2.325329e-02	k: 19262	n:840000
KS ci ratio: 2.771854e+00	ci left: 3.014025e-08	ci right 6.632891e-06	k: 1	n:840000
CCNF   840000 perm   453 sec   (1855 perm/sec)   p_kst 1.190476e-06   p_cons 2.293095e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.339849e-06	k: 0	n:850000
Cons ci ratio: 2.776385e-02	ci left: 2.259706e-02	ci right 2.323443e-02	k: 19477	n:850000
KS ci ratio: 2.771854e+00	ci left: 2.978566e-08	ci right 6.554857e-06	k: 1	n:850000
CCNF   850000 perm   461 sec   (1843 perm/sec)   p_kst 1.176471e-06   p_cons 2.291412e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.289386e-06	k: 0	n:860000
Cons ci ratio: 2.762145e-02	ci left: 2.256756e-02	ci right 2.320078e-02	k: 19679	n:860000
KS ci ratio: 2.771854e+00	ci left: 2.943931e-08	ci right 6.478638e-06	k: 1	n:860000
CCNF   860000 perm   470 sec   (1831 perm/sec)   p_kst 1.162791e-06   p_cons 2.288256e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.240082e-06	k: 0	n:870000
Cons ci ratio: 2.745084e-02	ci left: 2.258783e-02	ci right 2.321765e-02	k: 19924	n:870000
KS ci ratio: 2.771854e+00	ci left: 2.910093e-08	ci right 6.404171e-06	k: 1	n:870000
CCNF   870000 perm   478 sec   (1819 perm/sec)   p_kst 1.149425e-06   p_cons 2.290115e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.191900e-06	k: 0	n:880000
Cons ci ratio: 2.728128e-02	ci left: 2.261105e-02	ci right 2.323755e-02	k: 20172	n:880000
KS ci ratio: 2.771854e+00	ci left: 2.877024e-08	ci right 6.331396e-06	k: 1	n:880000
CCNF   880000 perm   488 sec   (1805 perm/sec)   p_kst 1.136364e-06   p_cons 2.292273e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.144800e-06	k: 0	n:890000
Cons ci ratio: 2.710736e-02	ci left: 2.264603e-02	ci right 2.326944e-02	k: 20431	n:890000
KS ci ratio: 2.771854e+00	ci left: 2.844697e-08	ci right 6.260257e-06	k: 1	n:890000
CCNF   890000 perm   496 sec   (1793 perm/sec)   p_kst 1.123596e-06   p_cons 2.295618e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.098747e-06	k: 0	n:900000
Cons ci ratio: 2.696407e-02	ci left: 2.263499e-02	ci right 2.325475e-02	k: 20649	n:900000
KS ci ratio: 2.771854e+00	ci left: 2.813090e-08	ci right 6.190699e-06	k: 1	n:900000
CCNF   900000 perm   505 sec   (1782 perm/sec)   p_kst 1.111111e-06   p_cons 2.294333e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.053705e-06	k: 0	n:910000
Cons ci ratio: 2.681383e-02	ci left: 2.263948e-02	ci right 2.325587e-02	k: 20881	n:910000
KS ci ratio: 2.771854e+00	ci left: 2.782177e-08	ci right 6.122670e-06	k: 1	n:910000
CCNF   910000 perm   514 sec   (1770 perm/sec)   p_kst 1.098901e-06   p_cons 2.294615e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.009644e-06	k: 0	n:920000
Cons ci ratio: 2.665961e-02	ci left: 2.265469e-02	ci right 2.326788e-02	k: 21123	n:920000
KS ci ratio: 2.771854e+00	ci left: 2.751936e-08	ci right 6.056119e-06	k: 1	n:920000
CCNF   920000 perm   523 sec   (1759 perm/sec)   p_kst 1.086957e-06   p_cons 2.295978e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.966529e-06	k: 0	n:930000
Cons ci ratio: 2.651882e-02	ci left: 2.265142e-02	ci right 2.326124e-02	k: 21348	n:930000
KS ci ratio: 2.771854e+00	ci left: 2.722345e-08	ci right 5.991000e-06	k: 1	n:930000
CCNF   930000 perm   532 sec   (1749 perm/sec)   p_kst 1.075269e-06   p_cons 2.295484e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.924332e-06	k: 0	n:940000
Cons ci ratio: 2.637836e-02	ci left: 2.265139e-02	ci right 2.325793e-02	k: 21576	n:940000
KS ci ratio: 2.771854e+00	ci left: 2.693384e-08	ci right 5.927266e-06	k: 1	n:940000
CCNF   940000 perm   541 sec   (1737 perm/sec)   p_kst 1.063830e-06   p_cons 2.295319e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.883023e-06	k: 0	n:950000
Cons ci ratio: 2.624688e-02	ci left: 2.263988e-02	ci right 2.324304e-02	k: 21793	n:950000
KS ci ratio: 2.771854e+00	ci left: 2.665032e-08	ci right 5.864874e-06	k: 1	n:950000
CCNF   950000 perm   550 sec   (1726 perm/sec)   p_kst 1.052632e-06   p_cons 2.294000e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.842575e-06	k: 0	n:960000
Cons ci ratio: 2.611736e-02	ci left: 2.262860e-02	ci right 2.322845e-02	k: 22010	n:960000
KS ci ratio: 2.771854e+00	ci left: 2.637272e-08	ci right 5.803781e-06	k: 1	n:960000
CCNF   960000 perm   560 sec   (1715 perm/sec)   p_kst 1.041667e-06   p_cons 2.292708e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.802961e-06	k: 0	n:970000
Cons ci ratio: 2.596821e-02	ci left: 2.265445e-02	ci right 2.325150e-02	k: 22263	n:970000
KS ci ratio: 2.771854e+00	ci left: 2.610083e-08	ci right 5.743949e-06	k: 1	n:970000
CCNF   970000 perm   569 sec   (1704 perm/sec)   p_kst 1.030928e-06   p_cons 2.295155e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.764156e-06	k: 0	n:980000
Cons ci ratio: 2.584628e-02	ci left: 2.263719e-02	ci right 2.323094e-02	k: 22474	n:980000
KS ci ratio: 2.771854e+00	ci left: 2.583450e-08	ci right 5.685337e-06	k: 1	n:980000
CCNF   980000 perm   579 sec   (1693 perm/sec)   p_kst 1.020408e-06   p_cons 2.293265e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.726134e-06	k: 0	n:990000
Cons ci ratio: 2.569997e-02	ci left: 2.266546e-02	ci right 2.325653e-02	k: 22730	n:990000
KS ci ratio: 2.771854e+00	ci left: 2.557354e-08	ci right 5.627910e-06	k: 1	n:990000
CCNF   990000 perm   588 sec   (1682 perm/sec)   p_kst 1.010101e-06   p_cons 2.295960e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.688873e-06	k: 0	n:1000000
Cons ci ratio: 2.557548e-02	ci left: 2.265938e-02	ci right 2.324739e-02	k: 22952	n:1000000
KS ci ratio: 2.771854e+00	ci left: 2.531781e-08	ci right 5.571631e-06	k: 1	n:1000000
CCNF   1000000 perm   598 sec   (1671 perm/sec)   p_kst 1.000000e-06   p_cons 2.295200e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.652349e-06	k: 0	n:1010000
Cons ci ratio: 2.544436e-02	ci left: 2.266818e-02	ci right 2.325337e-02	k: 23189	n:1010000
KS ci ratio: 2.771854e+00	ci left: 2.506714e-08	ci right 5.516466e-06	k: 1	n:1010000
CCNF   1010000 perm   608 sec   (1661 perm/sec)   p_kst 9.900990e-07   p_cons 2.295941e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.616542e-06	k: 0	n:1020000
Cons ci ratio: 2.531690e-02	ci left: 2.267390e-02	ci right 2.325626e-02	k: 23423	n:1020000
KS ci ratio: 2.771855e+00	ci left: 2.482138e-08	ci right 5.462383e-06	k: 1	n:1020000
CCNF   1020000 perm   618 sec   (1650 perm/sec)   p_kst 9.803922e-07   p_cons 2.296373e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.581430e-06	k: 0	n:1030000
Cons ci ratio: 2.519623e-02	ci left: 2.267084e-02	ci right 2.325030e-02	k: 23648	n:1030000
KS ci ratio: 2.771855e+00	ci left: 2.458040e-08	ci right 5.409351e-06	k: 1	n:1030000
CCNF   1030000 perm   628 sec   (1639 perm/sec)   p_kst 9.708738e-07   p_cons 2.295922e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.546993e-06	k: 0	n:1040000
Cons ci ratio: 2.506224e-02	ci left: 2.269459e-02	ci right 2.327153e-02	k: 23901	n:1040000
KS ci ratio: 2.771855e+00	ci left: 2.434405e-08	ci right 5.357338e-06	k: 1	n:1040000
CCNF   1040000 perm   638 sec   (1630 perm/sec)   p_kst 9.615385e-07   p_cons 2.298173e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.513212e-06	k: 0	n:1050000
Cons ci ratio: 2.493987e-02	ci left: 2.270086e-02	ci right 2.327511e-02	k: 24136	n:1050000
KS ci ratio: 2.771855e+00	ci left: 2.411220e-08	ci right 5.306315e-06	k: 1	n:1050000
CCNF   1050000 perm   648 sec   (1620 perm/sec)   p_kst 9.523810e-07   p_cons 2.298667e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.480069e-06	k: 0	n:1060000
Cons ci ratio: 2.481303e-02	ci left: 2.271828e-02	ci right 2.328999e-02	k: 24383	n:1060000
KS ci ratio: 2.771855e+00	ci left: 2.388472e-08	ci right 5.256256e-06	k: 1	n:1060000
CCNF   1060000 perm   658 sec   (1611 perm/sec)   p_kst 9.433962e-07   p_cons 2.300283e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.447545e-06	k: 0	n:1070000
Cons ci ratio: 2.470402e-02	ci left: 2.270657e-02	ci right 2.327545e-02	k: 24599	n:1070000
KS ci ratio: 2.771855e+00	ci left: 2.366150e-08	ci right 5.207132e-06	k: 1	n:1070000
CCNF   1070000 perm   668 sec   (1601 perm/sec)   p_kst 9.345794e-07   p_cons 2.298972e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.415623e-06	k: 0	n:1080000
Cons ci ratio: 2.459644e-02	ci left: 2.269509e-02	ci right 2.326117e-02	k: 24815	n:1080000
KS ci ratio: 2.771855e+00	ci left: 2.344241e-08	ci right 5.158918e-06	k: 1	n:1080000
CCNF   1080000 perm   678 sec   (1592 perm/sec)   p_kst 9.259259e-07   p_cons 2.297685e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.384287e-06	k: 0	n:1090000
Cons ci ratio: 2.446974e-02	ci left: 2.272122e-02	ci right 2.328499e-02	k: 25072	n:1090000
KS ci ratio: 2.771855e+00	ci left: 2.322735e-08	ci right 5.111589e-06	k: 1	n:1090000
CCNF   1090000 perm   689 sec   (1583 perm/sec)   p_kst 9.174312e-07   p_cons 2.300183e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.353521e-06	k: 0	n:1100000
Cons ci ratio: 2.436468e-02	ci left: 2.271073e-02	ci right 2.327179e-02	k: 25289	n:1100000
KS ci ratio: 2.771855e+00	ci left: 2.301619e-08	ci right 5.065120e-06	k: 1	n:1100000
CCNF   1100000 perm   699 sec   (1574 perm/sec)   p_kst 9.090909e-07   p_cons 2.299000e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.323309e-06	k: 0	n:1110000
Cons ci ratio: 2.425707e-02	ci left: 2.270760e-02	ci right 2.326607e-02	k: 25514	n:1110000
KS ci ratio: 2.771855e+00	ci left: 2.280884e-08	ci right 5.019488e-06	k: 1	n:1110000
CCNF   1110000 perm   710 sec   (1564 perm/sec)   p_kst 9.009009e-07   p_cons 2.298559e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.293637e-06	k: 0	n:1120000
Cons ci ratio: 2.415424e-02	ci left: 2.269832e-02	ci right 2.325416e-02	k: 25732	n:1120000
KS ci ratio: 2.771855e+00	ci left: 2.260519e-08	ci right 4.974671e-06	k: 1	n:1120000
CCNF   1120000 perm   720 sec   (1555 perm/sec)   p_kst 8.928571e-07   p_cons 2.297500e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.264490e-06	k: 0	n:1130000
Cons ci ratio: 2.403753e-02	ci left: 2.271735e-02	ci right 2.327094e-02	k: 25982	n:1130000
KS ci ratio: 2.771855e+00	ci left: 2.240514e-08	ci right 4.930648e-06	k: 1	n:1130000
CCNF   1130000 perm   731 sec   (1546 perm/sec)   p_kst 8.849558e-07   p_cons 2.299292e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.235854e-06	k: 0	n:1140000
Cons ci ratio: 2.393325e-02	ci left: 2.271601e-02	ci right 2.326712e-02	k: 26209	n:1140000
KS ci ratio: 2.771855e+00	ci left: 2.220860e-08	ci right 4.887397e-06	k: 1	n:1140000
CCNF   1140000 perm   741 sec   (1538 perm/sec)   p_kst 8.771930e-07   p_cons 2.299035e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.207716e-06	k: 0	n:1150000
Cons ci ratio: 2.381924e-02	ci left: 2.273544e-02	ci right 2.328436e-02	k: 26460	n:1150000
KS ci ratio: 2.771855e+00	ci left: 2.201548e-08	ci right 4.844898e-06	k: 1	n:1150000
CCNF   1150000 perm   752 sec   (1529 perm/sec)   p_kst 8.695652e-07   p_cons 2.300870e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.180063e-06	k: 0	n:1160000
Cons ci ratio: 2.372276e-02	ci left: 2.272454e-02	ci right 2.327095e-02	k: 26676	n:1160000
KS ci ratio: 2.771855e+00	ci left: 2.182570e-08	ci right 4.803131e-06	k: 1	n:1160000
CCNF   1160000 perm   763 sec   (1520 perm/sec)   p_kst 8.620690e-07   p_cons 2.299655e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.152883e-06	k: 0	n:1170000
Cons ci ratio: 2.363194e-02	ci left: 2.270534e-02	ci right 2.324916e-02	k: 26882	n:1170000
KS ci ratio: 2.263209e+00	ci left: 2.070165e-07	ci right 6.174933e-06	k: 2	n:1170000
CCNF   1170000 perm   774 sec   (1512 perm/sec)   p_kst 1.709402e-06   p_cons 2.297607e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.126164e-06	k: 0	n:1180000
Cons ci ratio: 2.352972e-02	ci left: 2.271006e-02	ci right 2.325161e-02	k: 27116	n:1180000
KS ci ratio: 2.263209e+00	ci left: 2.052622e-07	ci right 6.122603e-06	k: 2	n:1180000
CCNF   1180000 perm   786 sec   (1502 perm/sec)   p_kst 1.694915e-06   p_cons 2.297966e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.099894e-06	k: 0	n:1190000
Cons ci ratio: 2.342179e-02	ci left: 2.272807e-02	ci right 2.326753e-02	k: 27366	n:1190000
KS ci ratio: 2.263209e+00	ci left: 2.035373e-07	ci right 6.071153e-06	k: 2	n:1190000
CCNF   1190000 perm   797 sec   (1494 perm/sec)   p_kst 1.680672e-06   p_cons 2.299664e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.074061e-06	k: 0	n:1200000
Cons ci ratio: 2.332312e-02	ci left: 2.273087e-02	ci right 2.326810e-02	k: 27598	n:1200000
KS ci ratio: 2.263209e+00	ci left: 2.018411e-07	ci right 6.020560e-06	k: 2	n:1200000
CCNF   1200000 perm   808 sec   (1486 perm/sec)   p_kst 1.666667e-06   p_cons 2.299833e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.048656e-06	k: 0	n:1210000
Cons ci ratio: 2.322868e-02	ci left: 2.272788e-02	ci right 2.326284e-02	k: 27823	n:1210000
KS ci ratio: 2.263209e+00	ci left: 2.001730e-07	ci right 5.970803e-06	k: 2	n:1210000
CCNF   1210000 perm   819 sec   (1477 perm/sec)   p_kst 1.652893e-06   p_cons 2.299421e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.023667e-06	k: 0	n:1220000
Cons ci ratio: 2.313579e-02	ci left: 2.272413e-02	ci right 2.325683e-02	k: 28047	n:1220000
KS ci ratio: 2.263209e+00	ci left: 1.985323e-07	ci right 5.921862e-06	k: 2	n:1220000
CCNF   1220000 perm   831 sec   (1469 perm/sec)   p_kst 1.639344e-06   p_cons 2.298934e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.999084e-06	k: 0	n:1230000
Cons ci ratio: 2.304652e-02	ci left: 2.271559e-02	ci right 2.324601e-02	k: 28265	n:1230000
KS ci ratio: 2.263209e+00	ci left: 1.969182e-07	ci right 5.873717e-06	k: 2	n:1230000
CCNF   1230000 perm   842 sec   (1461 perm/sec)   p_kst 1.626016e-06   p_cons 2.297967e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.974898e-06	k: 0	n:1240000
Cons ci ratio: 2.295250e-02	ci left: 2.271842e-02	ci right 2.324671e-02	k: 28497	n:1240000
KS ci ratio: 2.263209e+00	ci left: 1.953301e-07	ci right 5.826349e-06	k: 2	n:1240000
CCNF   1240000 perm   853 sec   (1453 perm/sec)   p_kst 1.612903e-06   p_cons 2.298145e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.951099e-06	k: 0	n:1250000
Cons ci ratio: 2.286776e-02	ci left: 2.270530e-02	ci right 2.323131e-02	k: 28709	n:1250000
KS ci ratio: 2.263209e+00	ci left: 1.937675e-07	ci right 5.779738e-06	k: 2	n:1250000
CCNF   1250000 perm   865 sec   (1445 perm/sec)   p_kst 1.600000e-06   p_cons 2.296720e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.927678e-06	k: 0	n:1260000
Cons ci ratio: 2.276987e-02	ci left: 2.272002e-02	ci right 2.324408e-02	k: 28956	n:1260000
KS ci ratio: 2.263209e+00	ci left: 1.922296e-07	ci right 5.733867e-06	k: 2	n:1260000
CCNF   1260000 perm   876 sec   (1438 perm/sec)   p_kst 1.587302e-06   p_cons 2.298095e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.904625e-06	k: 0	n:1270000
Cons ci ratio: 2.267520e-02	ci left: 2.273059e-02	ci right 2.325269e-02	k: 29198	n:1270000
KS ci ratio: 2.263209e+00	ci left: 1.907160e-07	ci right 5.688719e-06	k: 2	n:1270000
CCNF   1270000 perm   888 sec   (1430 perm/sec)   p_kst 1.574803e-06   p_cons 2.299055e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.881933e-06	k: 0	n:1280000
Cons ci ratio: 2.258563e-02	ci left: 2.273323e-02	ci right 2.325331e-02	k: 29430	n:1280000
KS ci ratio: 2.263210e+00	ci left: 1.892261e-07	ci right 5.644276e-06	k: 2	n:1280000
CCNF   1280000 perm   900 sec   (1423 perm/sec)   p_kst 1.562500e-06   p_cons 2.299219e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.859592e-06	k: 0	n:1290000
Cons ci ratio: 2.249168e-02	ci left: 2.274663e-02	ci right 2.326482e-02	k: 29676	n:1290000
KS ci ratio: 2.263210e+00	ci left: 1.877592e-07	ci right 5.600522e-06	k: 2	n:1290000
CCNF   1290000 perm   912 sec   (1415 perm/sec)   p_kst 1.550388e-06   p_cons 2.300465e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.837596e-06	k: 0	n:1300000
Cons ci ratio: 2.240772e-02	ci left: 2.274223e-02	ci right 2.325836e-02	k: 29899	n:1300000
KS ci ratio: 2.263210e+00	ci left: 1.863149e-07	ci right 5.557441e-06	k: 2	n:1300000
CCNF   1300000 perm   924 sec   (1408 perm/sec)   p_kst 1.538462e-06   p_cons 2.299923e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.815935e-06	k: 0	n:1310000
Cons ci ratio: 2.231710e-02	ci left: 2.275308e-02	ci right 2.326735e-02	k: 30142	n:1310000
KS ci ratio: 2.263210e+00	ci left: 1.848926e-07	ci right 5.515018e-06	k: 2	n:1310000
CCNF   1310000 perm   935 sec   (1401 perm/sec)   p_kst 1.526718e-06   p_cons 2.300916e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.794602e-06	k: 0	n:1320000
Cons ci ratio: 2.223019e-02	ci left: 2.275851e-02	ci right 2.327086e-02	k: 30378	n:1320000
KS ci ratio: 2.263210e+00	ci left: 1.834919e-07	ci right 5.473237e-06	k: 2	n:1320000
CCNF   1320000 perm   947 sec   (1394 perm/sec)   p_kst 1.515152e-06   p_cons 2.301364e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.773590e-06	k: 0	n:1330000
Cons ci ratio: 2.214578e-02	ci left: 2.276086e-02	ci right 2.327130e-02	k: 30610	n:1330000
KS ci ratio: 2.263210e+00	ci left: 1.821123e-07	ci right 5.432085e-06	k: 2	n:1330000
CCNF   1330000 perm   959 sec   (1387 perm/sec)   p_kst 1.503759e-06   p_cons 2.301504e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.752891e-06	k: 0	n:1340000
Cons ci ratio: 2.207001e-02	ci left: 2.274759e-02	ci right 2.325597e-02	k: 30821	n:1340000
KS ci ratio: 2.263210e+00	ci left: 1.807532e-07	ci right 5.391547e-06	k: 2	n:1340000
CCNF   1340000 perm   971 sec   (1380 perm/sec)   p_kst 1.492537e-06   p_cons 2.300075e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.732500e-06	k: 0	n:1350000
Cons ci ratio: 2.198486e-02	ci left: 2.275515e-02	ci right 2.326171e-02	k: 31060	n:1350000
KS ci ratio: 2.263210e+00	ci left: 1.794143e-07	ci right 5.351610e-06	k: 2	n:1350000
CCNF   1350000 perm   983 sec   (1373 perm/sec)   p_kst 1.481481e-06   p_cons 2.300741e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.712408e-06	k: 0	n:1360000
Cons ci ratio: 2.189961e-02	ci left: 2.276480e-02	ci right 2.326958e-02	k: 31302	n:1360000
KS ci ratio: 2.263210e+00	ci left: 1.780951e-07	ci right 5.312260e-06	k: 2	n:1360000
CCNF   1360000 perm   996 sec   (1366 perm/sec)   p_kst 1.470588e-06   p_cons 2.301618e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.692609e-06	k: 0	n:1370000
Cons ci ratio: 2.182917e-02	ci left: 2.274600e-02	ci right 2.324872e-02	k: 31505	n:1370000
KS ci ratio: 2.263210e+00	ci left: 1.767951e-07	ci right 5.273485e-06	k: 2	n:1370000
CCNF   1370000 perm   1008 sec   (1359 perm/sec)   p_kst 1.459854e-06   p_cons 2.299635e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.673097e-06	k: 0	n:1380000
Cons ci ratio: 2.174887e-02	ci left: 2.274909e-02	ci right 2.325001e-02	k: 31738	n:1380000
KS ci ratio: 2.263210e+00	ci left: 1.755140e-07	ci right 5.235271e-06	k: 2	n:1380000
CCNF   1380000 perm   1021 sec   (1352 perm/sec)   p_kst 1.449275e-06   p_cons 2.299855e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.653867e-06	k: 0	n:1390000
Cons ci ratio: 2.166772e-02	ci left: 2.275573e-02	ci right 2.325490e-02	k: 31976	n:1390000
KS ci ratio: 2.263210e+00	ci left: 1.742513e-07	ci right 5.197607e-06	k: 2	n:1390000
CCNF   1390000 perm   1033 sec   (1345 perm/sec)   p_kst 1.438849e-06   p_cons 2.300432e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.634910e-06	k: 0	n:1400000
Cons ci ratio: 2.158953e-02	ci left: 2.275800e-02	ci right 2.325540e-02	k: 32208	n:1400000
KS ci ratio: 2.263210e+00	ci left: 1.730067e-07	ci right 5.160482e-06	k: 2	n:1400000
CCNF   1400000 perm   1046 sec   (1339 perm/sec)   p_kst 1.428571e-06   p_cons 2.300571e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.616223e-06	k: 0	n:1410000
Cons ci ratio: 2.151218e-02	ci left: 2.276025e-02	ci right 2.325589e-02	k: 32440	n:1410000
KS ci ratio: 2.263210e+00	ci left: 1.717797e-07	ci right 5.123882e-06	k: 2	n:1410000
CCNF   1410000 perm   1058 sec   (1332 perm/sec)   p_kst 1.418440e-06   p_cons 2.300709e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.597799e-06	k: 0	n:1420000
Cons ci ratio: 2.143599e-02	ci left: 2.276177e-02	ci right 2.325567e-02	k: 32671	n:1420000
KS ci ratio: 2.263210e+00	ci left: 1.705700e-07	ci right 5.087799e-06	k: 2	n:1420000
CCNF   1420000 perm   1071 sec   (1326 perm/sec)   p_kst 1.408451e-06   p_cons 2.300775e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.579633e-06	k: 0	n:1430000
Cons ci ratio: 2.135761e-02	ci left: 2.276953e-02	ci right 2.326177e-02	k: 32911	n:1430000
KS ci ratio: 2.263210e+00	ci left: 1.693772e-07	ci right 5.052220e-06	k: 2	n:1430000
CCNF   1430000 perm   1084 sec   (1320 perm/sec)   p_kst 1.398601e-06   p_cons 2.301469e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.561719e-06	k: 0	n:1440000
Cons ci ratio: 2.128370e-02	ci left: 2.276959e-02	ci right 2.326011e-02	k: 33140	n:1440000
KS ci ratio: 2.263210e+00	ci left: 1.682009e-07	ci right 5.017135e-06	k: 2	n:1440000
CCNF   1440000 perm   1097 sec   (1313 perm/sec)   p_kst 1.388889e-06   p_cons 2.301389e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.544052e-06	k: 0	n:1450000
Cons ci ratio: 2.121902e-02	ci left: 2.275181e-02	ci right 2.324044e-02	k: 33343	n:1450000
KS ci ratio: 2.263210e+00	ci left: 1.670409e-07	ci right 4.982534e-06	k: 2	n:1450000
CCNF   1450000 perm   1110 sec   (1307 perm/sec)   p_kst 1.379310e-06   p_cons 2.299517e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.526627e-06	k: 0	n:1460000
Cons ci ratio: 2.113784e-02	ci left: 2.277040e-02	ci right 2.325753e-02	k: 33599	n:1460000
KS ci ratio: 2.263210e+00	ci left: 1.658968e-07	ci right 4.948407e-06	k: 2	n:1460000
CCNF   1460000 perm   1123 sec   (1300 perm/sec)   p_kst 1.369863e-06   p_cons 2.301301e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.509439e-06	k: 0	n:1470000
Cons ci ratio: 2.106172e-02	ci left: 2.277993e-02	ci right 2.326549e-02	k: 33842	n:1470000
KS ci ratio: 2.263210e+00	ci left: 1.647683e-07	ci right 4.914745e-06	k: 2	n:1470000
CCNF   1470000 perm   1136 sec   (1294 perm/sec)   p_kst 1.360544e-06   p_cons 2.302177e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.492483e-06	k: 0	n:1480000
Cons ci ratio: 2.098610e-02	ci left: 2.279001e-02	ci right 2.327402e-02	k: 34086	n:1480000
KS ci ratio: 2.263210e+00	ci left: 1.636550e-07	ci right 4.881537e-06	k: 2	n:1480000
CCNF   1480000 perm   1149 sec   (1288 perm/sec)   p_kst 1.351351e-06   p_cons 2.303108e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.475755e-06	k: 0	n:1490000
Cons ci ratio: 2.092190e-02	ci left: 2.277726e-02	ci right 2.325950e-02	k: 34296	n:1490000
KS ci ratio: 2.263210e+00	ci left: 1.625566e-07	ci right 4.848775e-06	k: 2	n:1490000
CCNF   1490000 perm   1162 sec   (1282 perm/sec)   p_kst 1.342282e-06   p_cons 2.301745e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.459250e-06	k: 0	n:1500000
Cons ci ratio: 2.085612e-02	ci left: 2.276932e-02	ci right 2.324986e-02	k: 34513	n:1500000
KS ci ratio: 2.263210e+00	ci left: 1.614729e-07	ci right 4.816450e-06	k: 2	n:1500000
CCNF   1500000 perm   1176 sec   (1276 perm/sec)   p_kst 1.333333e-06   p_cons 2.300867e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.442964e-06	k: 0	n:1510000
Cons ci ratio: 2.078973e-02	ci left: 2.276412e-02	ci right 2.324301e-02	k: 34734	n:1510000
KS ci ratio: 2.263210e+00	ci left: 1.604035e-07	ci right 4.784553e-06	k: 2	n:1510000
CCNF   1510000 perm   1189 sec   (1270 perm/sec)   p_kst 1.324503e-06   p_cons 2.300265e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.426891e-06	k: 0	n:1520000
Cons ci ratio: 2.071366e-02	ci left: 2.278126e-02	ci right 2.325872e-02	k: 34989	n:1520000
KS ci ratio: 2.263210e+00	ci left: 1.593482e-07	ci right 4.753076e-06	k: 2	n:1520000
CCNF   1520000 perm   1203 sec   (1264 perm/sec)   p_kst 1.315789e-06   p_cons 2.301908e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.411029e-06	k: 0	n:1530000
Cons ci ratio: 2.064472e-02	ci left: 2.278451e-02	ci right 2.326044e-02	k: 35223	n:1530000
KS ci ratio: 2.263210e+00	ci left: 1.583068e-07	ci right 4.722010e-06	k: 2	n:1530000
CCNF   1530000 perm   1217 sec   (1258 perm/sec)   p_kst 1.307190e-06   p_cons 2.302157e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.395373e-06	k: 0	n:1540000
Cons ci ratio: 2.057557e-02	ci left: 2.278966e-02	ci right 2.326408e-02	k: 35460	n:1540000
KS ci ratio: 2.263210e+00	ci left: 1.572788e-07	ci right 4.691348e-06	k: 2	n:1540000
CCNF   1540000 perm   1230 sec   (1252 perm/sec)   p_kst 1.298701e-06   p_cons 2.302597e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.379919e-06	k: 0	n:1550000
Cons ci ratio: 2.050887e-02	ci left: 2.279090e-02	ci right 2.326379e-02	k: 35691	n:1550000
KS ci ratio: 2.263210e+00	ci left: 1.562641e-07	ci right 4.661081e-06	k: 2	n:1550000
CCNF   1550000 perm   1244 sec   (1246 perm/sec)   p_kst 1.290323e-06   p_cons 2.302645e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.364664e-06	k: 0	n:1560000
Cons ci ratio: 2.043816e-02	ci left: 2.280233e-02	ci right 2.327381e-02	k: 35938	n:1560000
KS ci ratio: 2.263210e+00	ci left: 1.552624e-07	ci right 4.631202e-06	k: 2	n:1560000
CCNF   1560000 perm   1258 sec   (1240 perm/sec)   p_kst 1.282051e-06   p_cons 2.303718e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.349602e-06	k: 0	n:1570000
Cons ci ratio: 2.037221e-02	ci left: 2.280474e-02	ci right 2.327473e-02	k: 36171	n:1570000
KS ci ratio: 2.263210e+00	ci left: 1.542735e-07	ci right 4.601704e-06	k: 2	n:1570000
CCNF   1570000 perm   1272 sec   (1235 perm/sec)   p_kst 1.273885e-06   p_cons 2.303885e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.334731e-06	k: 0	n:1580000
Cons ci ratio: 2.030633e-02	ci left: 2.280838e-02	ci right 2.327691e-02	k: 36406	n:1580000
KS ci ratio: 2.263210e+00	ci left: 1.532970e-07	ci right 4.572580e-06	k: 2	n:1580000
CCNF   1580000 perm   1286 sec   (1229 perm/sec)   p_kst 1.265823e-06   p_cons 2.304177e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.320047e-06	k: 0	n:1590000
Cons ci ratio: 2.023712e-02	ci left: 2.282075e-02	ci right 2.328791e-02	k: 36655	n:1590000
KS ci ratio: 2.263210e+00	ci left: 1.523329e-07	ci right 4.543821e-06	k: 2	n:1590000
CCNF   1590000 perm   1300 sec   (1223 perm/sec)   p_kst 1.257862e-06   p_cons 2.305346e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.305547e-06	k: 0	n:1600000
Cons ci ratio: 2.016917e-02	ci left: 2.283171e-02	ci right 2.329751e-02	k: 36902	n:1600000
KS ci ratio: 2.263210e+00	ci left: 1.513808e-07	ci right 4.515422e-06	k: 2	n:1600000
CCNF   1600000 perm   1314 sec   (1218 perm/sec)   p_kst 1.250000e-06   p_cons 2.306375e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.291227e-06	k: 0	n:1610000
Cons ci ratio: 2.010329e-02	ci left: 2.283946e-02	ci right 2.330388e-02	k: 37144	n:1610000
KS ci ratio: 2.263210e+00	ci left: 1.504406e-07	ci right 4.487376e-06	k: 2	n:1610000
CCNF   1610000 perm   1328 sec   (1212 perm/sec)   p_kst 1.242236e-06   p_cons 2.307081e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.277083e-06	k: 0	n:1620000
Cons ci ratio: 2.004080e-02	ci left: 2.284096e-02	ci right 2.330395e-02	k: 37376	n:1620000
KS ci ratio: 2.263210e+00	ci left: 1.495119e-07	ci right 4.459677e-06	k: 2	n:1620000
CCNF   1620000 perm   1342 sec   (1207 perm/sec)   p_kst 1.234568e-06   p_cons 2.307160e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.263114e-06	k: 0	n:1630000
Cons ci ratio: 1.997997e-02	ci left: 2.284001e-02	ci right 2.330156e-02	k: 37604	n:1630000
KS ci ratio: 2.263210e+00	ci left: 1.485947e-07	ci right 4.432317e-06	k: 2	n:1630000
CCNF   1630000 perm   1357 sec   (1201 perm/sec)   p_kst 1.226994e-06   p_cons 2.306994e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.249314e-06	k: 0	n:1640000
Cons ci ratio: 1.992265e-02	ci left: 2.283240e-02	ci right 2.329246e-02	k: 37821	n:1640000
KS ci ratio: 2.263210e+00	ci left: 1.476886e-07	ci right 4.405290e-06	k: 2	n:1640000
CCNF   1640000 perm   1371 sec   (1196 perm/sec)   p_kst 1.219512e-06   p_cons 2.306159e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.235682e-06	k: 0	n:1650000
Cons ci ratio: 1.985995e-02	ci left: 2.283815e-02	ci right 2.329686e-02	k: 38060	n:1650000
KS ci ratio: 2.263210e+00	ci left: 1.467935e-07	ci right 4.378592e-06	k: 2	n:1650000
CCNF   1650000 perm   1386 sec   (1191 perm/sec)   p_kst 1.212121e-06   p_cons 2.306667e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.222214e-06	k: 0	n:1660000
Cons ci ratio: 1.979969e-02	ci left: 2.283964e-02	ci right 2.329697e-02	k: 38292	n:1660000
KS ci ratio: 2.263210e+00	ci left: 1.459092e-07	ci right 4.352215e-06	k: 2	n:1660000
CCNF   1660000 perm   1400 sec   (1186 perm/sec)   p_kst 1.204819e-06   p_cons 2.306747e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.208907e-06	k: 0	n:1670000
Cons ci ratio: 1.973395e-02	ci left: 2.285482e-02	ci right 2.331091e-02	k: 38547	n:1670000
KS ci ratio: 2.263210e+00	ci left: 1.450355e-07	ci right 4.326154e-06	k: 2	n:1670000
CCNF   1670000 perm   1415 sec   (1181 perm/sec)   p_kst 1.197605e-06   p_cons 2.308204e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.195759e-06	k: 0	n:1680000
Cons ci ratio: 1.968080e-02	ci left: 2.284256e-02	ci right 2.329718e-02	k: 38756	n:1680000
KS ci ratio: 2.263210e+00	ci left: 1.441722e-07	ci right 4.300403e-06	k: 2	n:1680000
CCNF   1680000 perm   1429 sec   (1176 perm/sec)   p_kst 1.190476e-06   p_cons 2.306905e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.182767e-06	k: 0	n:1690000
Cons ci ratio: 1.962447e-02	ci left: 2.283871e-02	ci right 2.329192e-02	k: 38979	n:1690000
KS ci ratio: 2.263210e+00	ci left: 1.433191e-07	ci right 4.274957e-06	k: 2	n:1690000
CCNF   1690000 perm   1444 sec   (1170 perm/sec)   p_kst 1.183432e-06   p_cons 2.306450e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.169927e-06	k: 0	n:1700000
Cons ci ratio: 1.956606e-02	ci left: 2.284075e-02	ci right 2.329264e-02	k: 39212	n:1700000
KS ci ratio: 2.263210e+00	ci left: 1.424761e-07	ci right 4.249810e-06	k: 2	n:1700000
CCNF   1700000 perm   1459 sec   (1165 perm/sec)   p_kst 1.176471e-06   p_cons 2.306588e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.157237e-06	k: 0	n:1710000
Cons ci ratio: 1.951375e-02	ci left: 2.282996e-02	ci right 2.328043e-02	k: 39423	n:1710000
KS ci ratio: 2.263210e+00	ci left: 1.416429e-07	ci right 4.224957e-06	k: 2	n:1710000
CCNF   1710000 perm   1474 sec   (1160 perm/sec)   p_kst 1.169591e-06   p_cons 2.305439e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.144695e-06	k: 0	n:1720000
Cons ci ratio: 1.945683e-02	ci left: 2.283088e-02	ci right 2.328003e-02	k: 39654	n:1720000
KS ci ratio: 2.263210e+00	ci left: 1.408194e-07	ci right 4.200393e-06	k: 2	n:1720000
CCNF   1720000 perm   1488 sec   (1156 perm/sec)   p_kst 1.162791e-06   p_cons 2.305465e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.132298e-06	k: 0	n:1730000
Cons ci ratio: 1.940090e-02	ci left: 2.283064e-02	ci right 2.327848e-02	k: 39883	n:1730000
KS ci ratio: 2.263210e+00	ci left: 1.400054e-07	ci right 4.176114e-06	k: 2	n:1730000
CCNF   1730000 perm   1503 sec   (1151 perm/sec)   p_kst 1.156069e-06   p_cons 2.305376e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.120043e-06	k: 0	n:1740000
Cons ci ratio: 1.934742e-02	ci left: 2.282582e-02	ci right 2.327232e-02	k: 40104	n:1740000
KS ci ratio: 2.263210e+00	ci left: 1.392008e-07	ci right 4.152113e-06	k: 2	n:1740000
CCNF   1740000 perm   1518 sec   (1146 perm/sec)   p_kst 1.149425e-06   p_cons 2.304828e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.107929e-06	k: 0	n:1750000
Cons ci ratio: 1.929047e-02	ci left: 2.283016e-02	ci right 2.327542e-02	k: 40341	n:1750000
KS ci ratio: 2.263210e+00	ci left: 1.384053e-07	ci right 4.128387e-06	k: 2	n:1750000
CCNF   1750000 perm   1533 sec   (1141 perm/sec)   p_kst 1.142857e-06   p_cons 2.305200e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.095952e-06	k: 0	n:1760000
Cons ci ratio: 1.923353e-02	ci left: 2.283559e-02	ci right 2.327962e-02	k: 40580	n:1760000
KS ci ratio: 2.263210e+00	ci left: 1.376189e-07	ci right 4.104930e-06	k: 2	n:1760000
CCNF   1760000 perm   1549 sec   (1137 perm/sec)   p_kst 1.136364e-06   p_cons 2.305682e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.084111e-06	k: 0	n:1770000
Cons ci ratio: 1.918552e-02	ci left: 2.282127e-02	ci right 2.326391e-02	k: 40784	n:1770000
KS ci ratio: 2.263210e+00	ci left: 1.368414e-07	ci right 4.081738e-06	k: 2	n:1770000
CCNF   1770000 perm   1564 sec   (1132 perm/sec)   p_kst 1.129944e-06   p_cons 2.304181e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.072402e-06	k: 0	n:1780000
Cons ci ratio: 1.912736e-02	ci left: 2.283172e-02	ci right 2.327320e-02	k: 41032	n:1780000
KS ci ratio: 2.263211e+00	ci left: 1.360727e-07	ci right 4.058807e-06	k: 2	n:1780000
CCNF   1780000 perm   1579 sec   (1127 perm/sec)   p_kst 1.123596e-06   p_cons 2.305169e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.060824e-06	k: 0	n:1790000
Cons ci ratio: 1.907067e-02	ci left: 2.283983e-02	ci right 2.328015e-02	k: 41276	n:1790000
KS ci ratio: 2.263211e+00	ci left: 1.353125e-07	ci right 4.036132e-06	k: 2	n:1790000
CCNF   1790000 perm   1595 sec   (1122 perm/sec)   p_kst 1.117318e-06   p_cons 2.305922e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.049375e-06	k: 0	n:1800000
Cons ci ratio: 1.901518e-02	ci left: 2.284620e-02	ci right 2.328534e-02	k: 41517	n:1800000
KS ci ratio: 2.263211e+00	ci left: 1.345607e-07	ci right 4.013710e-06	k: 2	n:1800000
CCNF   1800000 perm   1611 sec   (1118 perm/sec)   p_kst 1.111111e-06   p_cons 2.306500e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.038053e-06	k: 0	n:1810000
Cons ci ratio: 1.896110e-02	ci left: 2.285029e-02	ci right 2.328825e-02	k: 41754	n:1810000
KS ci ratio: 2.263211e+00	ci left: 1.338173e-07	ci right 3.991534e-06	k: 2	n:1810000
CCNF   1810000 perm   1626 sec   (1113 perm/sec)   p_kst 1.104972e-06   p_cons 2.306851e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.026855e-06	k: 0	n:1820000
Cons ci ratio: 1.890634e-02	ci left: 2.285708e-02	ci right 2.329389e-02	k: 41996	n:1820000
KS ci ratio: 2.263211e+00	ci left: 1.330820e-07	ci right 3.969603e-06	k: 2	n:1820000
CCNF   1820000 perm   1642 sec   (1108 perm/sec)   p_kst 1.098901e-06   p_cons 2.307473e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.015779e-06	k: 0	n:1830000
Cons ci ratio: 1.884930e-02	ci left: 2.287032e-02	ci right 2.330605e-02	k: 42250	n:1830000
KS ci ratio: 2.263211e+00	ci left: 1.323548e-07	ci right 3.947911e-06	k: 2	n:1830000
CCNF   1830000 perm   1658 sec   (1104 perm/sec)   p_kst 1.092896e-06   p_cons 2.308743e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.004824e-06	k: 0	n:1840000
Cons ci ratio: 1.879798e-02	ci left: 2.287098e-02	ci right 2.330552e-02	k: 42481	n:1840000
KS ci ratio: 2.263211e+00	ci left: 1.316355e-07	ci right 3.926455e-06	k: 2	n:1840000
CCNF   1840000 perm   1674 sec   (1099 perm/sec)   p_kst 1.086957e-06   p_cons 2.308750e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.993987e-06	k: 0	n:1850000
Cons ci ratio: 1.874708e-02	ci left: 2.287163e-02	ci right 2.330500e-02	k: 42712	n:1850000
KS ci ratio: 2.263211e+00	ci left: 1.309240e-07	ci right 3.905231e-06	k: 2	n:1850000
CCNF   1850000 perm   1690 sec   (1095 perm/sec)   p_kst 1.081081e-06   p_cons 2.308757e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.983267e-06	k: 0	n:1860000
Cons ci ratio: 1.869637e-02	ci left: 2.287281e-02	ci right 2.330502e-02	k: 42944	n:1860000
KS ci ratio: 2.263211e+00	ci left: 1.302201e-07	ci right 3.884235e-06	k: 2	n:1860000
CCNF   1860000 perm   1706 sec   (1090 perm/sec)   p_kst 1.075269e-06   p_cons 2.308817e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.972661e-06	k: 0	n:1870000
Cons ci ratio: 1.863657e-02	ci left: 2.289688e-02	ci right 2.332813e-02	k: 43219	n:1870000
KS ci ratio: 2.263211e+00	ci left: 1.295237e-07	ci right 3.863464e-06	k: 2	n:1870000
CCNF   1870000 perm   1722 sec   (1086 perm/sec)   p_kst 1.069519e-06   p_cons 2.311176e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.962168e-06	k: 0	n:1880000
Cons ci ratio: 1.858149e-02	ci left: 2.291062e-02	ci right 2.334085e-02	k: 43475	n:1880000
KS ci ratio: 2.263211e+00	ci left: 1.288347e-07	ci right 3.842914e-06	k: 2	n:1880000
CCNF   1880000 perm   1738 sec   (1082 perm/sec)   p_kst 1.063830e-06   p_cons 2.312500e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.951786e-06	k: 0	n:1890000
Cons ci ratio: 1.853146e-02	ci left: 2.291316e-02	ci right 2.334227e-02	k: 43710	n:1890000
KS ci ratio: 2.263211e+00	ci left: 1.281531e-07	ci right 3.822581e-06	k: 2	n:1890000
CCNF   1890000 perm   1754 sec   (1077 perm/sec)   p_kst 1.058201e-06   p_cons 2.312698e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.941514e-06	k: 0	n:1900000
Cons ci ratio: 1.848311e-02	ci left: 2.291254e-02	ci right 2.334050e-02	k: 43939	n:1900000
KS ci ratio: 2.263211e+00	ci left: 1.274786e-07	ci right 3.802462e-06	k: 2	n:1900000
CCNF   1900000 perm   1771 sec   (1073 perm/sec)   p_kst 1.052632e-06   p_cons 2.312579e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.931349e-06	k: 0	n:1910000
Cons ci ratio: 1.842746e-02	ci left: 2.293068e-02	ci right 2.335768e-02	k: 44204	n:1910000
KS ci ratio: 2.263211e+00	ci left: 1.268112e-07	ci right 3.782554e-06	k: 2	n:1910000
CCNF   1910000 perm   1788 sec   (1068 perm/sec)   p_kst 1.047120e-06   p_cons 2.314346e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.921290e-06	k: 0	n:1920000
Cons ci ratio: 1.837802e-02	ci left: 2.293464e-02	ci right 2.336055e-02	k: 44442	n:1920000
KS ci ratio: 2.263211e+00	ci left: 1.261507e-07	ci right 3.762853e-06	k: 2	n:1920000
CCNF   1920000 perm   1804 sec   (1064 perm/sec)   p_kst 1.041667e-06   p_cons 2.314688e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.911335e-06	k: 0	n:1930000
Cons ci ratio: 1.833192e-02	ci left: 2.293134e-02	ci right 2.335611e-02	k: 44666	n:1930000
KS ci ratio: 2.263211e+00	ci left: 1.254971e-07	ci right 3.743356e-06	k: 2	n:1930000
CCNF   1930000 perm   1821 sec   (1060 perm/sec)   p_kst 1.036269e-06   p_cons 2.314301e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.901482e-06	k: 0	n:1940000
Cons ci ratio: 1.828720e-02	ci left: 2.292550e-02	ci right 2.334912e-02	k: 44885	n:1940000
KS ci ratio: 2.263211e+00	ci left: 1.248502e-07	ci right 3.724061e-06	k: 2	n:1940000
CCNF   1940000 perm   1838 sec   (1056 perm/sec)   p_kst 1.030928e-06   p_cons 2.313660e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.891731e-06	k: 0	n:1950000
Cons ci ratio: 1.823930e-02	ci left: 2.292841e-02	ci right 2.335096e-02	k: 45121	n:1950000
KS ci ratio: 2.263211e+00	ci left: 1.242099e-07	ci right 3.704963e-06	k: 2	n:1950000
CCNF   1950000 perm   1854 sec   (1052 perm/sec)   p_kst 1.025641e-06   p_cons 2.313897e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.882080e-06	k: 0	n:1960000
Cons ci ratio: 1.819525e-02	ci left: 2.292265e-02	ci right 2.334406e-02	k: 45340	n:1960000
KS ci ratio: 2.263211e+00	ci left: 1.235762e-07	ci right 3.686060e-06	k: 2	n:1960000
CCNF   1960000 perm   1871 sec   (1047 perm/sec)   p_kst 1.020408e-06   p_cons 2.313265e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.872526e-06	k: 0	n:1970000
Cons ci ratio: 1.814501e-02	ci left: 2.293313e-02	ci right 2.335356e-02	k: 45591	n:1970000
KS ci ratio: 2.263211e+00	ci left: 1.229489e-07	ci right 3.667349e-06	k: 2	n:1970000
CCNF   1970000 perm   1888 sec   (1043 perm/sec)   p_kst 1.015228e-06   p_cons 2.314264e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.863069e-06	k: 0	n:1980000
Cons ci ratio: 1.809962e-02	ci left: 2.293244e-02	ci right 2.335179e-02	k: 45820	n:1980000
KS ci ratio: 2.263211e+00	ci left: 1.223279e-07	ci right 3.648827e-06	k: 2	n:1980000
CCNF   1980000 perm   1906 sec   (1039 perm/sec)   p_kst 1.010101e-06   p_cons 2.314141e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.853707e-06	k: 0	n:1990000
Cons ci ratio: 1.805457e-02	ci left: 2.293175e-02	ci right 2.335004e-02	k: 46049	n:1990000
KS ci ratio: 2.263211e+00	ci left: 1.217132e-07	ci right 3.630492e-06	k: 2	n:1990000
CCNF   1990000 perm   1923 sec   (1035 perm/sec)   p_kst 1.005025e-06   p_cons 2.314020e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.844438e-06	k: 0	n:2000000
Cons ci ratio: 1.800587e-02	ci left: 2.294103e-02	ci right 2.335835e-02	k: 46298	n:2000000
KS ci ratio: 2.263211e+00	ci left: 1.211047e-07	ci right 3.612339e-06	k: 2	n:2000000
CCNF   2000000 perm   1940 sec   (1031 perm/sec)   p_kst 1.000000e-06   p_cons 2.314900e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.835262e-06	k: 0	n:2010000
Cons ci ratio: 1.796310e-02	ci left: 2.293635e-02	ci right 2.335258e-02	k: 46519	n:2010000
KS ci ratio: 2.263211e+00	ci left: 1.205022e-07	ci right 3.594367e-06	k: 2	n:2010000
CCNF   2010000 perm   1957 sec   (1027 perm/sec)   p_kst 9.950249e-07   p_cons 2.314378e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.826176e-06	k: 0	n:2020000
Cons ci ratio: 1.792299e-02	ci left: 2.292581e-02	ci right 2.334091e-02	k: 46728	n:2020000
KS ci ratio: 2.263211e+00	ci left: 1.199056e-07	ci right 3.576573e-06	k: 2	n:2020000
CCNF   2020000 perm   1975 sec   (1023 perm/sec)   p_kst 9.900990e-07   p_cons 2.313267e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.817180e-06	k: 0	n:2030000
Cons ci ratio: 1.787885e-02	ci left: 2.292616e-02	ci right 2.334023e-02	k: 46959	n:2030000
KS ci ratio: 2.263211e+00	ci left: 1.193149e-07	ci right 3.558955e-06	k: 2	n:2030000
CCNF   2030000 perm   1992 sec   (1019 perm/sec)   p_kst 9.852217e-07   p_cons 2.313251e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.808273e-06	k: 0	n:2040000
Cons ci ratio: 1.783040e-02	ci left: 2.293822e-02	ci right 2.335137e-02	k: 47214	n:2040000
KS ci ratio: 2.263211e+00	ci left: 1.187301e-07	ci right 3.541509e-06	k: 2	n:2040000
CCNF   2040000 perm   2010 sec   (1015 perm/sec)   p_kst 9.803922e-07   p_cons 2.314412e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.799452e-06	k: 0	n:2050000
Cons ci ratio: 1.778522e-02	ci left: 2.294288e-02	ci right 2.335506e-02	k: 47454	n:2050000
KS ci ratio: 2.263211e+00	ci left: 1.181509e-07	ci right 3.524233e-06	k: 2	n:2050000
CCNF   2050000 perm   2027 sec   (1011 perm/sec)   p_kst 9.756098e-07   p_cons 2.314829e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.790717e-06	k: 0	n:2060000
Cons ci ratio: 1.773942e-02	ci left: 2.294991e-02	ci right 2.336114e-02	k: 47699	n:2060000
KS ci ratio: 2.263211e+00	ci left: 1.175773e-07	ci right 3.507125e-06	k: 2	n:2060000
CCNF   2060000 perm   2046 sec   (1007 perm/sec)   p_kst 9.708738e-07   p_cons 2.315485e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.782066e-06	k: 0	n:2070000
Cons ci ratio: 1.770117e-02	ci left: 2.293859e-02	ci right 2.334873e-02	k: 47906	n:2070000
KS ci ratio: 2.263211e+00	ci left: 1.170093e-07	ci right 3.490183e-06	k: 2	n:2070000
CCNF   2070000 perm   2064 sec   (1003 perm/sec)   p_kst 9.661836e-07   p_cons 2.314300e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.773498e-06	k: 0	n:2080000
Cons ci ratio: 1.765677e-02	ci left: 2.294367e-02	ci right 2.335286e-02	k: 48147	n:2080000
KS ci ratio: 2.263211e+00	ci left: 1.164468e-07	ci right 3.473403e-06	k: 2	n:2080000
CCNF   2080000 perm   2082 sec   (999 perm/sec)   p_kst 9.615385e-07   p_cons 2.314760e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.765013e-06	k: 0	n:2090000
Cons ci ratio: 1.761512e-02	ci left: 2.294250e-02	ci right 2.335069e-02	k: 48375	n:2090000
KS ci ratio: 2.263211e+00	ci left: 1.158896e-07	ci right 3.456784e-06	k: 2	n:2090000
CCNF   2090000 perm   2101 sec   (995 perm/sec)   p_kst 9.569378e-07   p_cons 2.314593e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.756608e-06	k: 0	n:2100000
Cons ci ratio: 1.757637e-02	ci left: 2.293470e-02	ci right 2.334185e-02	k: 48589	n:2100000
KS ci ratio: 2.263211e+00	ci left: 1.153378e-07	ci right 3.440323e-06	k: 2	n:2100000
CCNF   2100000 perm   2119 sec   (991 perm/sec)   p_kst 9.523810e-07   p_cons 2.313762e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.748283e-06	k: 0	n:2110000
Cons ci ratio: 1.753621e-02	ci left: 2.293123e-02	ci right 2.333738e-02	k: 48812	n:2110000
KS ci ratio: 2.263211e+00	ci left: 1.147911e-07	ci right 3.424018e-06	k: 2	n:2110000
CCNF   2110000 perm   2137 sec   (987 perm/sec)   p_kst 9.478673e-07   p_cons 2.313365e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.740036e-06	k: 0	n:2120000
Cons ci ratio: 1.749322e-02	ci left: 2.293578e-02	ci right 2.334100e-02	k: 49052	n:2120000
KS ci ratio: 2.263211e+00	ci left: 1.142497e-07	ci right 3.407867e-06	k: 2	n:2120000
CCNF   2120000 perm   2156 sec   (983 perm/sec)   p_kst 9.433962e-07   p_cons 2.313774e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.731867e-06	k: 0	n:2130000
Cons ci ratio: 1.745073e-02	ci left: 2.293981e-02	ci right 2.334411e-02	k: 49291	n:2130000
KS ci ratio: 2.263211e+00	ci left: 1.137133e-07	ci right 3.391868e-06	k: 2	n:2130000
CCNF   2130000 perm   2174 sec   (980 perm/sec)   p_kst 9.389671e-07   p_cons 2.314131e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.723774e-06	k: 0	n:2140000
Cons ci ratio: 1.740980e-02	ci left: 2.294056e-02	ci right 2.334391e-02	k: 49523	n:2140000
KS ci ratio: 2.263211e+00	ci left: 1.131819e-07	ci right 3.376018e-06	k: 2	n:2140000
CCNF   2140000 perm   2193 sec   (976 perm/sec)   p_kst 9.345794e-07   p_cons 2.314159e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.715756e-06	k: 0	n:2150000
Cons ci ratio: 1.737435e-02	ci left: 2.292786e-02	ci right 2.333017e-02	k: 49726	n:2150000
KS ci ratio: 2.263211e+00	ci left: 1.126555e-07	ci right 3.360316e-06	k: 2	n:2150000
CCNF   2150000 perm   2215 sec   (971 perm/sec)   p_kst 9.302326e-07   p_cons 2.312837e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.707813e-06	k: 0	n:2160000
Cons ci ratio: 1.732597e-02	ci left: 2.294940e-02	ci right 2.335095e-02	k: 50003	n:2160000
KS ci ratio: 2.263211e+00	ci left: 1.121339e-07	ci right 3.344759e-06	k: 2	n:2160000
CCNF   2160000 perm   2234 sec   (967 perm/sec)   p_kst 9.259259e-07   p_cons 2.314954e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.699943e-06	k: 0	n:2170000
Cons ci ratio: 1.728609e-02	ci left: 2.294964e-02	ci right 2.335026e-02	k: 50234	n:2170000
KS ci ratio: 2.263211e+00	ci left: 1.116172e-07	ci right 3.329345e-06	k: 2	n:2170000
CCNF   2170000 perm   2252 sec   (963 perm/sec)   p_kst 9.216590e-07   p_cons 2.314931e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.692145e-06	k: 0	n:2180000
Cons ci ratio: 1.724631e-02	ci left: 2.295033e-02	ci right 2.335003e-02	k: 50466	n:2180000
KS ci ratio: 2.263211e+00	ci left: 1.111052e-07	ci right 3.314073e-06	k: 2	n:2180000
CCNF   2180000 perm   2272 sec   (960 perm/sec)   p_kst 9.174312e-07   p_cons 2.314954e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.684418e-06	k: 0	n:2190000
Cons ci ratio: 1.720385e-02	ci left: 2.295874e-02	ci right 2.335759e-02	k: 50715	n:2190000
KS ci ratio: 2.263211e+00	ci left: 1.105979e-07	ci right 3.298940e-06	k: 2	n:2190000
CCNF   2190000 perm   2291 sec   (956 perm/sec)   p_kst 9.132420e-07   p_cons 2.315753e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.676762e-06	k: 0	n:2200000
Cons ci ratio: 1.716463e-02	ci left: 2.295938e-02	ci right 2.335733e-02	k: 50947	n:2200000
KS ci ratio: 2.263211e+00	ci left: 1.100951e-07	ci right 3.283945e-06	k: 2	n:2200000
CCNF   2200000 perm   2313 sec   (951 perm/sec)   p_kst 9.090909e-07   p_cons 2.315773e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.669175e-06	k: 0	n:2210000
Cons ci ratio: 1.712637e-02	ci left: 2.295822e-02	ci right 2.335525e-02	k: 51175	n:2210000
KS ci ratio: 2.263211e+00	ci left: 1.095970e-07	ci right 3.269086e-06	k: 2	n:2210000
CCNF   2210000 perm   2333 sec   (947 perm/sec)   p_kst 9.049774e-07   p_cons 2.315611e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.661656e-06	k: 0	n:2220000
Cons ci ratio: 1.708870e-02	ci left: 2.295617e-02	ci right 2.335228e-02	k: 51401	n:2220000
KS ci ratio: 2.263211e+00	ci left: 1.091033e-07	ci right 3.254360e-06	k: 2	n:2220000
CCNF   2220000 perm   2351 sec   (944 perm/sec)   p_kst 9.009009e-07   p_cons 2.315360e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.654205e-06	k: 0	n:2230000
Cons ci ratio: 1.705128e-02	ci left: 2.295414e-02	ci right 2.334934e-02	k: 51627	n:2230000
KS ci ratio: 2.263211e+00	ci left: 1.086140e-07	ci right 3.239766e-06	k: 2	n:2230000
CCNF   2230000 perm   2373 sec   (940 perm/sec)   p_kst 8.968610e-07   p_cons 2.315112e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.646820e-06	k: 0	n:2240000
Cons ci ratio: 1.701158e-02	ci left: 2.295880e-02	ci right 2.335315e-02	k: 51868	n:2240000
KS ci ratio: 2.263211e+00	ci left: 1.081292e-07	ci right 3.225303e-06	k: 2	n:2240000
CCNF   2240000 perm   2395 sec   (935 perm/sec)   p_kst 8.928571e-07   p_cons 2.315536e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.639501e-06	k: 0	n:2250000
Cons ci ratio: 1.697233e-02	ci left: 2.296297e-02	ci right 2.335648e-02	k: 52108	n:2250000
KS ci ratio: 2.263211e+00	ci left: 1.076486e-07	ci right 3.210969e-06	k: 2	n:2250000
CCNF   2250000 perm   2418 sec   (931 perm/sec)   p_kst 8.888889e-07   p_cons 2.315911e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.632246e-06	k: 0	n:2260000
Cons ci ratio: 1.693368e-02	ci left: 2.296623e-02	ci right 2.335889e-02	k: 52346	n:2260000
KS ci ratio: 2.263211e+00	ci left: 1.071723e-07	ci right 3.196761e-06	k: 2	n:2260000
CCNF   2260000 perm   2438 sec   (927 perm/sec)   p_kst 8.849558e-07   p_cons 2.316195e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.625056e-06	k: 0	n:2270000
Cons ci ratio: 1.689825e-02	ci left: 2.296156e-02	ci right 2.335331e-02	k: 52566	n:2270000
KS ci ratio: 2.263211e+00	ci left: 1.067001e-07	ci right 3.182678e-06	k: 2	n:2270000
CCNF   2270000 perm   2459 sec   (923 perm/sec)   p_kst 8.810573e-07   p_cons 2.315683e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.617928e-06	k: 0	n:2280000
Cons ci ratio: 1.686370e-02	ci left: 2.295519e-02	ci right 2.334602e-02	k: 52782	n:2280000
KS ci ratio: 2.263211e+00	ci left: 1.062322e-07	ci right 3.168719e-06	k: 2	n:2280000
CCNF   2280000 perm   2479 sec   (920 perm/sec)   p_kst 8.771930e-07   p_cons 2.315000e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.610863e-06	k: 0	n:2290000
Cons ci ratio: 1.682903e-02	ci left: 2.294974e-02	ci right 2.333967e-02	k: 53000	n:2290000
KS ci ratio: 2.263211e+00	ci left: 1.057683e-07	ci right 3.154882e-06	k: 2	n:2290000
CCNF   2290000 perm   2499 sec   (916 perm/sec)   p_kst 8.733624e-07   p_cons 2.314410e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.603859e-06	k: 0	n:2300000
Cons ci ratio: 1.679215e-02	ci left: 2.295084e-02	ci right 2.333993e-02	k: 53233	n:2300000
KS ci ratio: 2.263211e+00	ci left: 1.053084e-07	ci right 3.141165e-06	k: 2	n:2300000
CCNF   2300000 perm   2520 sec   (913 perm/sec)   p_kst 8.695652e-07   p_cons 2.314478e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.596916e-06	k: 0	n:2310000
Cons ci ratio: 1.675761e-02	ci left: 2.294633e-02	ci right 2.333452e-02	k: 53453	n:2310000
KS ci ratio: 2.263211e+00	ci left: 1.048525e-07	ci right 3.127567e-06	k: 2	n:2310000
CCNF   2310000 perm   2539 sec   (910 perm/sec)   p_kst 8.658009e-07   p_cons 2.313983e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.590033e-06	k: 0	n:2320000
Cons ci ratio: 1.672199e-02	ci left: 2.294528e-02	ci right 2.333263e-02	k: 53681	n:2320000
KS ci ratio: 2.263211e+00	ci left: 1.044006e-07	ci right 3.114086e-06	k: 2	n:2320000
CCNF   2320000 perm   2559 sec   (907 perm/sec)   p_kst 8.620690e-07   p_cons 2.313836e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.583209e-06	k: 0	n:2330000
Cons ci ratio: 1.668487e-02	ci left: 2.294895e-02	ci right 2.333549e-02	k: 53920	n:2330000
KS ci ratio: 2.263211e+00	ci left: 1.039525e-07	ci right 3.100721e-06	k: 2	n:2330000
CCNF   2330000 perm   2579 sec   (903 perm/sec)   p_kst 8.583691e-07   p_cons 2.314163e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.576443e-06	k: 0	n:2340000
Cons ci ratio: 1.664704e-02	ci left: 2.295515e-02	ci right 2.334091e-02	k: 54165	n:2340000
KS ci ratio: 2.263211e+00	ci left: 1.035083e-07	ci right 3.087470e-06	k: 2	n:2340000
CCNF   2340000 perm   2599 sec   (900 perm/sec)   p_kst 8.547009e-07   p_cons 2.314744e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.569735e-06	k: 0	n:2350000
Cons ci ratio: 1.660947e-02	ci left: 2.296129e-02	ci right 2.334627e-02	k: 54410	n:2350000
KS ci ratio: 2.263211e+00	ci left: 1.030678e-07	ci right 3.074332e-06	k: 2	n:2350000
CCNF   2350000 perm   2619 sec   (897 perm/sec)   p_kst 8.510638e-07   p_cons 2.315319e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.563083e-06	k: 0	n:2360000
Cons ci ratio: 1.657495e-02	ci left: 2.295978e-02	ci right 2.334393e-02	k: 54637	n:2360000
KS ci ratio: 2.263211e+00	ci left: 1.026311e-07	ci right 3.061305e-06	k: 2	n:2360000
CCNF   2360000 perm   2640 sec   (894 perm/sec)   p_kst 8.474576e-07   p_cons 2.315127e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.556488e-06	k: 0	n:2370000
Cons ci ratio: 1.653894e-02	ci left: 2.296291e-02	ci right 2.334627e-02	k: 54875	n:2370000
KS ci ratio: 2.263211e+00	ci left: 1.021980e-07	ci right 3.048388e-06	k: 2	n:2370000
CCNF   2370000 perm   2661 sec   (891 perm/sec)   p_kst 8.438819e-07   p_cons 2.315401e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.549948e-06	k: 0	n:2380000
Cons ci ratio: 1.650302e-02	ci left: 2.296643e-02	ci right 2.334901e-02	k: 55114	n:2380000
KS ci ratio: 2.263211e+00	ci left: 1.017686e-07	ci right 3.035580e-06	k: 2	n:2380000
CCNF   2380000 perm   2682 sec   (888 perm/sec)   p_kst 8.403361e-07   p_cons 2.315714e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.543463e-06	k: 0	n:2390000
Cons ci ratio: 1.646382e-02	ci left: 2.297951e-02	ci right 2.336139e-02	k: 55376	n:2390000
KS ci ratio: 2.263211e+00	ci left: 1.013428e-07	ci right 3.022879e-06	k: 2	n:2390000
CCNF   2390000 perm   2703 sec   (884 perm/sec)   p_kst 8.368201e-07   p_cons 2.316987e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.537032e-06	k: 0	n:2400000
Cons ci ratio: 1.643186e-02	ci left: 2.297339e-02	ci right 2.335442e-02	k: 55592	n:2400000
KS ci ratio: 2.263211e+00	ci left: 1.009205e-07	ci right 3.010283e-06	k: 2	n:2400000
CCNF   2400000 perm   2724 sec   (881 perm/sec)   p_kst 8.333333e-07   p_cons 2.316333e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.530654e-06	k: 0	n:2410000
Cons ci ratio: 1.639753e-02	ci left: 2.297435e-02	ci right 2.335460e-02	k: 55825	n:2410000
KS ci ratio: 2.263211e+00	ci left: 1.005018e-07	ci right 2.997792e-06	k: 2	n:2410000
CCNF   2410000 perm   2745 sec   (878 perm/sec)   p_kst 8.298755e-07   p_cons 2.316390e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.524329e-06	k: 0	n:2420000
Cons ci ratio: 1.636880e-02	ci left: 2.296049e-02	ci right 2.333983e-02	k: 56022	n:2420000
KS ci ratio: 2.263211e+00	ci left: 1.000865e-07	ci right 2.985405e-06	k: 2	n:2420000
CCNF   2420000 perm   2766 sec   (875 perm/sec)   p_kst 8.264463e-07   p_cons 2.314959e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.518056e-06	k: 0	n:2430000
Cons ci ratio: 1.633471e-02	ci left: 2.296190e-02	ci right 2.334047e-02	k: 56256	n:2430000
KS ci ratio: 2.263211e+00	ci left: 9.967462e-08	ci right 2.973119e-06	k: 2	n:2430000
CCNF   2430000 perm   2788 sec   (872 perm/sec)   p_kst 8.230453e-07   p_cons 2.315062e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.511835e-06	k: 0	n:2440000
Cons ci ratio: 1.630202e-02	ci left: 2.296004e-02	ci right 2.333781e-02	k: 56482	n:2440000
KS ci ratio: 2.263211e+00	ci left: 9.926611e-08	ci right 2.960934e-06	k: 2	n:2440000
CCNF   2440000 perm   2809 sec   (868 perm/sec)   p_kst 8.196721e-07   p_cons 2.314836e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.505664e-06	k: 0	n:2450000
Cons ci ratio: 1.626614e-02	ci left: 2.296755e-02	ci right 2.334460e-02	k: 56731	n:2450000
KS ci ratio: 2.263211e+00	ci left: 9.886095e-08	ci right 2.948849e-06	k: 2	n:2450000
CCNF   2450000 perm   2831 sec   (866 perm/sec)   p_kst 8.163265e-07   p_cons 2.315551e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.499543e-06	k: 0	n:2460000
Cons ci ratio: 1.623269e-02	ci left: 2.296892e-02	ci right 2.334521e-02	k: 56965	n:2460000
KS ci ratio: 2.263211e+00	ci left: 9.845907e-08	ci right 2.936862e-06	k: 2	n:2460000
CCNF   2460000 perm   2852 sec   (863 perm/sec)   p_kst 8.130081e-07   p_cons 2.315650e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.493472e-06	k: 0	n:2470000
Cons ci ratio: 1.619988e-02	ci left: 2.296907e-02	ci right 2.334460e-02	k: 57196	n:2470000
KS ci ratio: 2.263211e+00	ci left: 9.806045e-08	ci right 2.924972e-06	k: 2	n:2470000
CCNF   2470000 perm   2873 sec   (860 perm/sec)   p_kst 8.097166e-07   p_cons 2.315628e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.487450e-06	k: 0	n:2480000
Cons ci ratio: 1.616698e-02	ci left: 2.297002e-02	ci right 2.334480e-02	k: 57429	n:2480000
KS ci ratio: 2.263211e+00	ci left: 9.766505e-08	ci right 2.913177e-06	k: 2	n:2480000
CCNF   2480000 perm   2895 sec   (857 perm/sec)   p_kst 8.064516e-07   p_cons 2.315685e-02   p_joint 0

Joint ci ratio: 1.959998e+00	ci left: 2.484628e-07	ci right 3.520989e-06	k: 3	n:2490000
Cons ci ratio: 1.533671e-02	ci left: 2.536977e-02	ci right 2.576226e-02	k: 63658	n:2490000
KS ci ratio: 2.771857e+00	ci left: 1.016779e-08	ci right 2.237606e-06	k: 1	n:2490000
CCNF   2490000 perm   2916 sec   (854 perm/sec)   p_kst 4.016064e-07   p_cons 2.556546e-02   p_joint 1.204819e-06

Joint ci ratio: 1.959998e+00	ci left: 2.474689e-07	ci right 3.506905e-06	k: 3	n:2500000
Cons ci ratio: 1.530941e-02	ci left: 2.535914e-02	ci right 2.575076e-02	k: 63886	n:2500000
KS ci ratio: 2.771857e+00	ci left: 1.012712e-08	ci right 2.228655e-06	k: 1	n:2500000
CCNF   2500000 perm   2937 sec   (851 perm/sec)   p_kst 4.000000e-07   p_cons 2.555440e-02   p_joint 1.200000e-06

Joint ci ratio: 1.959998e+00	ci left: 2.464830e-07	ci right 3.492933e-06	k: 3	n:2510000
Cons ci ratio: 1.528115e-02	ci left: 2.535217e-02	ci right 2.574295e-02	k: 64123	n:2510000
KS ci ratio: 2.771857e+00	ci left: 1.008678e-08	ci right 2.219776e-06	k: 1	n:2510000
CCNF   2510000 perm   2959 sec   (848 perm/sec)   p_kst 3.984064e-07   p_cons 2.554701e-02   p_joint 1.195219e-06

Joint ci ratio: 1.959998e+00	ci left: 2.455049e-07	ci right 3.479073e-06	k: 3	n:2520000
Cons ci ratio: 1.524746e-02	ci left: 2.536344e-02	ci right 2.575353e-02	k: 64406	n:2520000
KS ci ratio: 2.771857e+00	ci left: 1.004675e-08	ci right 2.210968e-06	k: 1	n:2520000
CCNF   2520000 perm   2980 sec   (846 perm/sec)   p_kst 3.968254e-07   p_cons 2.555794e-02   p_joint 1.190476e-06

Joint ci ratio: 1.959998e+00	ci left: 2.445345e-07	ci right 3.465321e-06	k: 3	n:2530000
Cons ci ratio: 1.521857e-02	ci left: 2.535966e-02	ci right 2.574894e-02	k: 64651	n:2530000
KS ci ratio: 2.771857e+00	ci left: 1.000704e-08	ci right 2.202229e-06	k: 1	n:2530000
CCNF   2530000 perm   3002 sec   (843 perm/sec)   p_kst 3.952569e-07   p_cons 2.555375e-02   p_joint 1.185771e-06

Joint ci ratio: 1.959998e+00	ci left: 2.435718e-07	ci right 3.451678e-06	k: 3	n:2540000
Cons ci ratio: 1.518889e-02	ci left: 2.535904e-02	ci right 2.574755e-02	k: 64904	n:2540000
KS ci ratio: 2.771857e+00	ci left: 9.967641e-09	ci right 2.193558e-06	k: 1	n:2540000
CCNF   2540000 perm   3023 sec   (840 perm/sec)   p_kst 3.937008e-07   p_cons 2.555276e-02   p_joint 1.181102e-06

Joint ci ratio: 1.959998e+00	ci left: 2.426166e-07	ci right 3.438142e-06	k: 3	n:2550000
Cons ci ratio: 1.515580e-02	ci left: 2.537016e-02	ci right 2.575798e-02	k: 65187	n:2550000
KS ci ratio: 2.771857e+00	ci left: 9.928552e-09	ci right 2.184956e-06	k: 1	n:2550000
CCNF   2550000 perm   3044 sec   (838 perm/sec)   p_kst 3.921569e-07   p_cons 2.556353e-02   p_joint 1.176471e-06

Joint ci ratio: 1.959998e+00	ci left: 2.416689e-07	ci right 3.424712e-06	k: 3	n:2560000
Cons ci ratio: 1.512352e-02	ci left: 2.537924e-02	ci right 2.576637e-02	k: 65465	n:2560000
KS ci ratio: 2.771857e+00	ci left: 9.889769e-09	ci right 2.176421e-06	k: 1	n:2560000
CCNF   2560000 perm   3068 sec   (834 perm/sec)   p_kst 3.906250e-07   p_cons 2.557227e-02   p_joint 1.171875e-06

Joint ci ratio: 1.753075e+00	ci left: 4.240723e-07	ci right 3.985049e-06	k: 4	n:2570000
Cons ci ratio: 1.509710e-02	ci left: 2.536964e-02	ci right 2.575594e-02	k: 65695	n:2570000
KS ci ratio: 2.771857e+00	ci left: 9.851287e-09	ci right 2.167953e-06	k: 1	n:2570000
CCNF   2570000 perm   3090 sec   (832 perm/sec)   p_kst 3.891051e-07   p_cons 2.556226e-02   p_joint 1.556420e-06

Joint ci ratio: 1.753075e+00	ci left: 4.224286e-07	ci right 3.969603e-06	k: 4	n:2580000
Cons ci ratio: 1.506765e-02	ci left: 2.537055e-02	ci right 2.575610e-02	k: 65952	n:2580000
KS ci ratio: 2.771857e+00	ci left: 9.813104e-09	ci right 2.159550e-06	k: 1	n:2580000
CCNF   2580000 perm   3112 sec   (829 perm/sec)   p_kst 3.875969e-07   p_cons 2.556279e-02   p_joint 1.550388e-06

Joint ci ratio: 1.753075e+00	ci left: 4.207976e-07	ci right 3.954277e-06	k: 4	n:2590000
Cons ci ratio: 1.503931e-02	ci left: 2.536837e-02	ci right 2.575316e-02	k: 66201	n:2590000
KS ci ratio: 2.771857e+00	ci left: 9.775216e-09	ci right 2.151212e-06	k: 1	n:2590000
CCNF   2590000 perm   3135 sec   (826 perm/sec)   p_kst 3.861004e-07   p_cons 2.556023e-02   p_joint 1.544402e-06

Joint ci ratio: 1.753075e+00	ci left: 4.191791e-07	ci right 3.939068e-06	k: 4	n:2600000
Cons ci ratio: 1.501344e-02	ci left: 2.535854e-02	ci right 2.574252e-02	k: 66430	n:2600000
KS ci ratio: 2.771857e+00	ci left: 9.737618e-09	ci right 2.142938e-06	k: 1	n:2600000
CCNF   2600000 perm   3157 sec   (824 perm/sec)   p_kst 3.846154e-07   p_cons 2.555000e-02   p_joint 1.538462e-06

Joint ci ratio: 1.753075e+00	ci left: 4.175731e-07	ci right 3.923976e-06	k: 4	n:2610000
Cons ci ratio: 1.498448e-02	ci left: 2.535948e-02	ci right 2.574272e-02	k: 66687	n:2610000
KS ci ratio: 2.771857e+00	ci left: 9.700310e-09	ci right 2.134727e-06	k: 1	n:2610000
CCNF   2610000 perm   3182 sec   (820 perm/sec)   p_kst 3.831418e-07   p_cons 2.555057e-02   p_joint 1.532567e-06

Joint ci ratio: 1.753075e+00	ci left: 4.159793e-07	ci right 3.908999e-06	k: 4	n:2620000
Cons ci ratio: 1.495649e-02	ci left: 2.535775e-02	ci right 2.574024e-02	k: 66937	n:2620000
KS ci ratio: 2.771857e+00	ci left: 9.663285e-09	ci right 2.126580e-06	k: 1	n:2620000
CCNF   2620000 perm   3204 sec   (818 perm/sec)   p_kst 3.816794e-07   p_cons 2.554847e-02   p_joint 1.526718e-06

Joint ci ratio: 1.753075e+00	ci left: 4.143976e-07	ci right 3.894136e-06	k: 4	n:2630000
Cons ci ratio: 1.493025e-02	ci left: 2.535073e-02	ci right 2.573244e-02	k: 67173	n:2630000
KS ci ratio: 2.771857e+00	ci left: 9.626543e-09	ci right 2.118494e-06	k: 1	n:2630000
CCNF   2630000 perm   3226 sec   (815 perm/sec)   p_kst 3.802281e-07   p_cons 2.554106e-02   p_joint 1.520913e-06

Joint ci ratio: 1.600331e+00	ci left: 6.149572e-07	ci right 4.419817e-06	k: 5	n:2640000
Cons ci ratio: 1.489905e-02	ci left: 2.536075e-02	ci right 2.574181e-02	k: 67454	n:2640000
KS ci ratio: 2.263211e+00	ci left: 9.174595e-08	ci right 2.736621e-06	k: 2	n:2640000
CCNF   2640000 perm   3252 sec   (812 perm/sec)   p_kst 7.575758e-07   p_cons 2.555076e-02   p_joint 1.893939e-06

Joint ci ratio: 1.600331e+00	ci left: 6.126366e-07	ci right 4.403139e-06	k: 5	n:2650000
Cons ci ratio: 1.487220e-02	ci left: 2.535678e-02	ci right 2.573709e-02	k: 67698	n:2650000
KS ci ratio: 2.263211e+00	ci left: 9.139974e-08	ci right 2.726295e-06	k: 2	n:2650000
CCNF   2650000 perm   3280 sec   (808 perm/sec)   p_kst 7.547170e-07   p_cons 2.554642e-02   p_joint 1.886792e-06

Joint ci ratio: 1.600331e+00	ci left: 6.103335e-07	ci right 4.386586e-06	k: 5	n:2660000
Cons ci ratio: 1.484035e-02	ci left: 2.537007e-02	ci right 2.574976e-02	k: 67988	n:2660000
KS ci ratio: 2.263211e+00	ci left: 9.105613e-08	ci right 2.716045e-06	k: 2	n:2660000
CCNF   2660000 perm   3302 sec   (806 perm/sec)   p_kst 7.518797e-07   p_cons 2.555940e-02   p_joint 1.879699e-06

Joint ci ratio: 1.600331e+00	ci left: 6.080476e-07	ci right 4.370156e-06	k: 5	n:2670000
Cons ci ratio: 1.481472e-02	ci left: 2.536312e-02	ci right 2.574203e-02	k: 68224	n:2670000
KS ci ratio: 2.263211e+00	ci left: 9.071510e-08	ci right 2.705873e-06	k: 2	n:2670000
CCNF   2670000 perm   3325 sec   (803 perm/sec)   p_kst 7.490637e-07   p_cons 2.555206e-02   p_joint 1.872659e-06

Joint ci ratio: 1.600331e+00	ci left: 6.057788e-07	ci right 4.353850e-06	k: 5	n:2680000
Cons ci ratio: 1.478534e-02	ci left: 2.536922e-02	ci right 2.574747e-02	k: 68495	n:2680000
KS ci ratio: 2.263211e+00	ci left: 9.037661e-08	ci right 2.695776e-06	k: 2	n:2680000
CCNF   2680000 perm   3348 sec   (800 perm/sec)   p_kst 7.462687e-07   p_cons 2.555784e-02   p_joint 1.865672e-06

Joint ci ratio: 1.600331e+00	ci left: 6.035268e-07	ci right 4.337665e-06	k: 5	n:2690000
Cons ci ratio: 1.475812e-02	ci left: 2.536862e-02	ci right 2.574616e-02	k: 68748	n:2690000
KS ci ratio: 2.263211e+00	ci left: 9.004064e-08	ci right 2.685755e-06	k: 2	n:2690000
CCNF   2690000 perm   3371 sec   (798 perm/sec)   p_kst 7.434944e-07   p_cons 2.555688e-02   p_joint 1.858736e-06

Joint ci ratio: 1.600331e+00	ci left: 6.012915e-07	ci right 4.321599e-06	k: 5	n:2700000
Cons ci ratio: 1.473258e-02	ci left: 2.536285e-02	ci right 2.573965e-02	k: 68987	n:2700000
KS ci ratio: 2.263211e+00	ci left: 8.970715e-08	ci right 2.675808e-06	k: 2	n:2700000
CCNF   2700000 perm   3396 sec   (795 perm/sec)   p_kst 7.407407e-07   p_cons 2.555074e-02   p_joint 1.851852e-06

Joint ci ratio: 1.600331e+00	ci left: 5.990727e-07	ci right 4.305652e-06	k: 5	n:2710000
Cons ci ratio: 1.470673e-02	ci left: 2.535860e-02	ci right 2.573467e-02	k: 69230	n:2710000
KS ci ratio: 2.263211e+00	ci left: 8.937613e-08	ci right 2.665934e-06	k: 2	n:2710000
CCNF   2710000 perm   3419 sec   (793 perm/sec)   p_kst 7.380074e-07   p_cons 2.554613e-02   p_joint 1.845018e-06

Joint ci ratio: 1.600331e+00	ci left: 5.968703e-07	ci right 4.289823e-06	k: 5	n:2720000
Cons ci ratio: 1.468027e-02	ci left: 2.535694e-02	ci right 2.573230e-02	k: 69480	n:2720000
KS ci ratio: 2.263211e+00	ci left: 8.904754e-08	ci right 2.656133e-06	k: 2	n:2720000
CCNF   2720000 perm   3442 sec   (790 perm/sec)   p_kst 7.352941e-07   p_cons 2.554412e-02   p_joint 1.838235e-06

Joint ci ratio: 1.959998e+00	ci left: 2.266199e-07	ci right 3.211452e-06	k: 3	n:2730000
Cons ci ratio: 1.465513e-02	ci left: 2.535129e-02	ci right 2.572591e-02	k: 69719	n:2730000
KS ci ratio: 2.263211e+00	ci left: 8.872136e-08	ci right 2.646403e-06	k: 2	n:2730000
CCNF   2730000 perm   3465 sec   (788 perm/sec)   p_kst 7.326007e-07   p_cons 2.553810e-02   p_joint 1.098901e-06

Joint ci ratio: 1.959998e+00	ci left: 2.257928e-07	ci right 3.199731e-06	k: 3	n:2740000
Cons ci ratio: 1.462872e-02	ci left: 2.535040e-02	ci right 2.572433e-02	k: 69971	n:2740000
KS ci ratio: 2.263211e+00	ci left: 8.839756e-08	ci right 2.636745e-06	k: 2	n:2740000
CCNF   2740000 perm   3490 sec   (785 perm/sec)   p_kst 7.299270e-07   p_cons 2.553686e-02   p_joint 1.094891e-06

Joint ci ratio: 1.959998e+00	ci left: 2.249717e-07	ci right 3.188096e-06	k: 3	n:2750000
Cons ci ratio: 1.460086e-02	ci left: 2.535495e-02	ci right 2.572823e-02	k: 70238	n:2750000
KS ci ratio: 2.263211e+00	ci left: 8.807611e-08	ci right 2.627157e-06	k: 2	n:2750000
CCNF   2750000 perm   3514 sec   (783 perm/sec)   p_kst 7.272727e-07   p_cons 2.554109e-02   p_joint 1.090909e-06

Joint ci ratio: 1.959998e+00	ci left: 2.241566e-07	ci right 3.176545e-06	k: 3	n:2760000
Cons ci ratio: 1.457708e-02	ci left: 2.534611e-02	ci right 2.571865e-02	k: 70468	n:2760000
KS ci ratio: 2.263211e+00	ci left: 8.775700e-08	ci right 2.617638e-06	k: 2	n:2760000
CCNF   2760000 perm   3537 sec   (780 perm/sec)   p_kst 7.246377e-07   p_cons 2.553188e-02   p_joint 1.086957e-06

Joint ci ratio: 1.959998e+00	ci left: 2.233474e-07	ci right 3.165077e-06	k: 3	n:2770000
Cons ci ratio: 1.455099e-02	ci left: 2.534561e-02	ci right 2.571747e-02	k: 70721	n:2770000
KS ci ratio: 2.263211e+00	ci left: 8.744018e-08	ci right 2.608188e-06	k: 2	n:2770000
CCNF   2770000 perm   3560 sec   (778 perm/sec)   p_kst 7.220217e-07   p_cons 2.553105e-02   p_joint 1.083032e-06

Joint ci ratio: 1.959998e+00	ci left: 2.225440e-07	ci right 3.153692e-06	k: 3	n:2780000
Cons ci ratio: 1.452368e-02	ci left: 2.534978e-02	ci right 2.572100e-02	k: 70987	n:2780000
KS ci ratio: 2.263211e+00	ci left: 8.712565e-08	ci right 2.598806e-06	k: 2	n:2780000
CCNF   2780000 perm   3585 sec   (775 perm/sec)   p_kst 7.194245e-07   p_cons 2.553489e-02   p_joint 1.079137e-06

Joint ci ratio: 1.959998e+00	ci left: 2.217463e-07	ci right 3.142389e-06	k: 3	n:2790000
Cons ci ratio: 1.449693e-02	ci left: 2.535249e-02	ci right 2.572305e-02	k: 71249	n:2790000
KS ci ratio: 2.263211e+00	ci left: 8.681337e-08	ci right 2.589491e-06	k: 2	n:2790000
CCNF   2790000 perm   3609 sec   (773 perm/sec)   p_kst 7.168459e-07   p_cons 2.553728e-02   p_joint 1.075269e-06

Joint ci ratio: 1.959998e+00	ci left: 2.209544e-07	ci right 3.131166e-06	k: 3	n:2800000
Cons ci ratio: 1.447096e-02	ci left: 2.535304e-02	ci right 2.572294e-02	k: 71505	n:2800000
KS ci ratio: 2.263211e+00	ci left: 8.650333e-08	ci right 2.580243e-06	k: 2	n:2800000
CCNF   2800000 perm   3633 sec   (771 perm/sec)   p_kst 7.142857e-07   p_cons 2.553750e-02   p_joint 1.071429e-06

Joint ci ratio: 1.959998e+00	ci left: 2.201681e-07	ci right 3.120023e-06	k: 3	n:2810000
Cons ci ratio: 1.444419e-02	ci left: 2.535678e-02	ci right 2.572605e-02	k: 71770	n:2810000
KS ci ratio: 2.263211e+00	ci left: 8.619548e-08	ci right 2.571061e-06	k: 2	n:2810000
CCNF   2810000 perm   3657 sec   (768 perm/sec)   p_kst 7.117438e-07   p_cons 2.554093e-02   p_joint 1.067616e-06

Joint ci ratio: 1.959998e+00	ci left: 2.193873e-07	ci right 3.108959e-06	k: 3	n:2820000
Cons ci ratio: 1.441809e-02	ci left: 2.535873e-02	ci right 2.572735e-02	k: 72030	n:2820000
KS ci ratio: 2.263211e+00	ci left: 8.588983e-08	ci right 2.561944e-06	k: 2	n:2820000
CCNF   2820000 perm   3682 sec   (766 perm/sec)   p_kst 7.092199e-07   p_cons 2.554255e-02   p_joint 1.063830e-06

Joint ci ratio: 1.959998e+00	ci left: 2.186121e-07	ci right 3.097973e-06	k: 3	n:2830000
Cons ci ratio: 1.439141e-02	ci left: 2.536313e-02	ci right 2.573113e-02	k: 72297	n:2830000
KS ci ratio: 2.263211e+00	ci left: 8.558633e-08	ci right 2.552891e-06	k: 2	n:2830000
CCNF   2830000 perm   3707 sec   (763 perm/sec)   p_kst 7.067138e-07   p_cons 2.554664e-02   p_joint 1.060071e-06

Joint ci ratio: 1.959998e+00	ci left: 2.178423e-07	ci right 3.087065e-06	k: 3	n:2840000
Cons ci ratio: 1.436823e-02	ci left: 2.535592e-02	ci right 2.572322e-02	k: 72531	n:2840000
KS ci ratio: 2.263211e+00	ci left: 8.528497e-08	ci right 2.543902e-06	k: 2	n:2840000
CCNF   2840000 perm   3732 sec   (761 perm/sec)   p_kst 7.042254e-07   p_cons 2.553908e-02   p_joint 1.056338e-06

Joint ci ratio: 1.959998e+00	ci left: 2.170780e-07	ci right 3.076233e-06	k: 3	n:2850000
Cons ci ratio: 1.434072e-02	ci left: 2.536415e-02	ci right 2.573085e-02	k: 72809	n:2850000
KS ci ratio: 2.263211e+00	ci left: 8.498572e-08	ci right 2.534976e-06	k: 2	n:2850000
CCNF   2850000 perm   3758 sec   (758 perm/sec)   p_kst 7.017544e-07   p_cons 2.554702e-02   p_joint 1.052632e-06

Joint ci ratio: 1.959998e+00	ci left: 2.163190e-07	ci right 3.065477e-06	k: 3	n:2860000
Cons ci ratio: 1.431597e-02	ci left: 2.536326e-02	ci right 2.572931e-02	k: 73061	n:2860000
KS ci ratio: 2.263211e+00	ci left: 8.468857e-08	ci right 2.526112e-06	k: 2	n:2860000
CCNF   2860000 perm   3782 sec   (756 perm/sec)   p_kst 6.993007e-07   p_cons 2.554580e-02   p_joint 1.048951e-06

Joint ci ratio: 1.959998e+00	ci left: 2.155653e-07	ci right 3.054796e-06	k: 3	n:2870000
Cons ci ratio: 1.429246e-02	ci left: 2.535855e-02	ci right 2.572394e-02	k: 73302	n:2870000
KS ci ratio: 2.263211e+00	ci left: 8.439349e-08	ci right 2.517310e-06	k: 2	n:2870000
CCNF   2870000 perm   3805 sec   (754 perm/sec)   p_kst 6.968641e-07   p_cons 2.554077e-02   p_joint 1.045296e-06

Joint ci ratio: 1.959998e+00	ci left: 2.148168e-07	ci right 3.044189e-06	k: 3	n:2880000
Cons ci ratio: 1.426816e-02	ci left: 2.535700e-02	ci right 2.572173e-02	k: 73552	n:2880000
KS ci ratio: 2.263211e+00	ci left: 8.410045e-08	ci right 2.508570e-06	k: 2	n:2880000
CCNF   2880000 perm   3831 sec   (752 perm/sec)   p_kst 6.944444e-07   p_cons 2.553889e-02   p_joint 1.041667e-06

Joint ci ratio: 1.959998e+00	ci left: 2.140735e-07	ci right 3.033655e-06	k: 3	n:2890000
Cons ci ratio: 1.424320e-02	ci left: 2.535821e-02	ci right 2.572232e-02	k: 73810	n:2890000
KS ci ratio: 2.263211e+00	ci left: 8.380945e-08	ci right 2.499890e-06	k: 2	n:2890000
CCNF   2890000 perm   3856 sec   (749 perm/sec)   p_kst 6.920415e-07   p_cons 2.553979e-02   p_joint 1.038062e-06

Joint ci ratio: 1.959998e+00	ci left: 2.133353e-07	ci right 3.023195e-06	k: 3	n:2900000
Cons ci ratio: 1.421885e-02	ci left: 2.535770e-02	ci right 2.572118e-02	k: 74063	n:2900000
KS ci ratio: 2.263211e+00	ci left: 8.352045e-08	ci right 2.491269e-06	k: 2	n:2900000
CCNF   2900000 perm   3881 sec   (747 perm/sec)   p_kst 6.896552e-07   p_cons 2.553897e-02   p_joint 1.034483e-06

Joint ci ratio: 1.959998e+00	ci left: 2.126022e-07	ci right 3.012806e-06	k: 3	n:2910000
Cons ci ratio: 1.419552e-02	ci left: 2.535411e-02	ci right 2.571694e-02	k: 74307	n:2910000
KS ci ratio: 2.263211e+00	ci left: 8.323344e-08	ci right 2.482708e-06	k: 2	n:2910000
CCNF   2910000 perm   3906 sec   (745 perm/sec)   p_kst 6.872852e-07   p_cons 2.553505e-02   p_joint 1.030928e-06

Joint ci ratio: 1.959998e+00	ci left: 2.118741e-07	ci right 3.002488e-06	k: 3	n:2920000
Cons ci ratio: 1.417005e-02	ci left: 2.535840e-02	ci right 2.572063e-02	k: 74574	n:2920000
KS ci ratio: 2.263212e+00	ci left: 8.294839e-08	ci right 2.474206e-06	k: 2	n:2920000
CCNF   2920000 perm   3931 sec   (743 perm/sec)   p_kst 6.849315e-07   p_cons 2.553904e-02   p_joint 1.027397e-06

Joint ci ratio: 1.959998e+00	ci left: 2.111509e-07	ci right 2.992240e-06	k: 3	n:2930000
Cons ci ratio: 1.571184e-02	ci left: 2.063927e-02	ci right 2.096645e-02	k: 60951	n:2930000
KS ci ratio: 2.263212e+00	ci left: 8.266529e-08	ci right 2.465762e-06	k: 2	n:2930000
CCNF   2930000 perm   3959 sec   (740 perm/sec)   p_kst 6.825939e-07   p_cons 2.080239e-02   p_joint 1.023891e-06

Joint ci ratio: 1.959998e+00	ci left: 2.104327e-07	ci right 2.982063e-06	k: 3	n:2940000
Cons ci ratio: 1.568405e-02	ci left: 2.064225e-02	ci right 2.096890e-02	k: 61167	n:2940000
KS ci ratio: 2.263212e+00	ci left: 8.238412e-08	ci right 2.457375e-06	k: 2	n:2940000
CCNF   2940000 perm   3998 sec   (735 perm/sec)   p_kst 6.802721e-07   p_cons 2.080510e-02   p_joint 1.020408e-06

Joint ci ratio: 1.959998e+00	ci left: 2.097194e-07	ci right 2.971954e-06	k: 3	n:2950000
Cons ci ratio: 1.565967e-02	ci left: 2.063677e-02	ci right 2.096282e-02	k: 61358	n:2950000
KS ci ratio: 2.263212e+00	ci left: 8.210485e-08	ci right 2.449044e-06	k: 2	n:2950000
CCNF   2950000 perm   4027 sec   (733 perm/sec)   p_kst 6.779661e-07   p_cons 2.079932e-02   p_joint 1.016949e-06

Joint ci ratio: 1.959998e+00	ci left: 2.090109e-07	ci right 2.961914e-06	k: 3	n:2960000
Cons ci ratio: 1.563294e-02	ci left: 2.063772e-02	ci right 2.096322e-02	k: 61568	n:2960000
KS ci ratio: 2.263212e+00	ci left: 8.182747e-08	ci right 2.440771e-06	k: 2	n:2960000
CCNF   2960000 perm   4052 sec   (731 perm/sec)   p_kst 6.756757e-07   p_cons 2.080000e-02   p_joint 1.013514e-06

Joint ci ratio: 1.959998e+00	ci left: 2.083072e-07	ci right 2.951941e-06	k: 3	n:2970000
Cons ci ratio: 1.560763e-02	ci left: 2.063531e-02	ci right 2.096024e-02	k: 61768	n:2970000
KS ci ratio: 2.263212e+00	ci left: 8.155196e-08	ci right 2.432553e-06	k: 2	n:2970000
CCNF   2970000 perm   4078 sec   (728 perm/sec)   p_kst 6.734007e-07   p_cons 2.079731e-02   p_joint 1.010101e-06

Joint ci ratio: 1.959998e+00	ci left: 2.076081e-07	ci right 2.942035e-06	k: 3	n:2980000
Cons ci ratio: 1.558244e-02	ci left: 2.063291e-02	ci right 2.095728e-02	k: 61968	n:2980000
KS ci ratio: 2.263212e+00	ci left: 8.127829e-08	ci right 2.424390e-06	k: 2	n:2980000
CCNF   2980000 perm   4104 sec   (726 perm/sec)   p_kst 6.711409e-07   p_cons 2.079463e-02   p_joint 1.006711e-06

Joint ci ratio: 1.959998e+00	ci left: 2.069138e-07	ci right 2.932196e-06	k: 3	n:2990000
Cons ci ratio: 1.555725e-02	ci left: 2.063087e-02	ci right 2.095467e-02	k: 62169	n:2990000
KS ci ratio: 2.263212e+00	ci left: 8.100646e-08	ci right 2.416281e-06	k: 2	n:2990000
CCNF   2990000 perm   4129 sec   (724 perm/sec)   p_kst 6.688963e-07   p_cons 2.079231e-02   p_joint 1.003344e-06

Joint ci ratio: 1.959998e+00	ci left: 2.062241e-07	ci right 2.922422e-06	k: 3	n:3000000
Cons ci ratio: 1.553002e-02	ci left: 2.063449e-02	ci right 2.095777e-02	k: 62387	n:3000000
KS ci ratio: 2.263212e+00	ci left: 8.073644e-08	ci right 2.408227e-06	k: 2	n:3000000
CCNF   3000000 perm   4156 sec   (722 perm/sec)   p_kst 6.666667e-07   p_cons 2.079567e-02   p_joint 1.000000e-06

Joint ci ratio: 1.959998e+00	ci left: 2.055390e-07	ci right 2.912713e-06	k: 3	n:3010000
Cons ci ratio: 1.550205e-02	ci left: 2.064039e-02	ci right 2.096319e-02	k: 62612	n:3010000
KS ci ratio: 2.263212e+00	ci left: 8.046821e-08	ci right 2.400226e-06	k: 2	n:3010000
CCNF   3010000 perm   4183 sec   (720 perm/sec)   p_kst 6.644518e-07   p_cons 2.080133e-02   p_joint 9.966777e-07

Joint ci ratio: 1.959998e+00	ci left: 2.048584e-07	ci right 2.903068e-06	k: 3	n:3020000
Cons ci ratio: 1.547762e-02	ci left: 2.063736e-02	ci right 2.095959e-02	k: 62810	n:3020000
KS ci ratio: 2.263212e+00	ci left: 8.020176e-08	ci right 2.392279e-06	k: 2	n:3020000
CCNF   3020000 perm   4213 sec   (717 perm/sec)   p_kst 6.622517e-07   p_cons 2.079801e-02   p_joint 9.933775e-07

Joint ci ratio: 1.753076e+00	ci left: 3.596917e-07	ci right 3.380059e-06	k: 4	n:3030000
Cons ci ratio: 1.545369e-02	ci left: 2.063335e-02	ci right 2.095502e-02	k: 63005	n:3030000
KS ci ratio: 2.263212e+00	ci left: 7.993707e-08	ci right 2.384383e-06	k: 2	n:3030000
CCNF   3030000 perm   4240 sec   (715 perm/sec)   p_kst 6.600660e-07   p_cons 2.079373e-02   p_joint 1.320132e-06

Joint ci ratio: 1.753076e+00	ci left: 3.585085e-07	ci right 3.368940e-06	k: 4	n:3040000
Cons ci ratio: 1.542625e-02	ci left: 2.063888e-02	ci right 2.096006e-02	k: 63229	n:3040000
KS ci ratio: 2.263212e+00	ci left: 7.967411e-08	ci right 2.376540e-06	k: 2	n:3040000
CCNF   3040000 perm   4268 sec   (712 perm/sec)   p_kst 6.578947e-07   p_cons 2.079901e-02   p_joint 1.315789e-06

Joint ci ratio: 1.753076e+00	ci left: 3.573330e-07	ci right 3.357894e-06	k: 4	n:3050000
Cons ci ratio: 1.540366e-02	ci left: 2.063196e-02	ci right 2.095256e-02	k: 63415	n:3050000
KS ci ratio: 2.263212e+00	ci left: 7.941289e-08	ci right 2.368748e-06	k: 2	n:3050000
CCNF   3050000 perm   4295 sec   (710 perm/sec)   p_kst 6.557377e-07   p_cons 2.079180e-02   p_joint 1.311475e-06

Joint ci ratio: 1.753076e+00	ci left: 3.561653e-07	ci right 3.346921e-06	k: 4	n:3060000
Cons ci ratio: 1.538069e-02	ci left: 2.062639e-02	ci right 2.094641e-02	k: 63605	n:3060000
KS ci ratio: 2.263212e+00	ci left: 7.915337e-08	ci right 2.361007e-06	k: 2	n:3060000
CCNF   3060000 perm   4324 sec   (708 perm/sec)   p_kst 6.535948e-07   p_cons 2.078595e-02   p_joint 1.307190e-06

Joint ci ratio: 1.753076e+00	ci left: 3.550051e-07	ci right 3.336019e-06	k: 4	n:3070000
Cons ci ratio: 1.535695e-02	ci left: 2.062312e-02	ci right 2.094260e-02	k: 63802	n:3070000
KS ci ratio: 2.263212e+00	ci left: 7.889554e-08	ci right 2.353316e-06	k: 2	n:3070000
CCNF   3070000 perm   4355 sec   (705 perm/sec)   p_kst 6.514658e-07   p_cons 2.078241e-02   p_joint 1.302932e-06

Joint ci ratio: 1.753076e+00	ci left: 3.538525e-07	ci right 3.325188e-06	k: 4	n:3080000
Cons ci ratio: 1.533235e-02	ci left: 2.062247e-02	ci right 2.094142e-02	k: 64007	n:3080000
KS ci ratio: 2.263212e+00	ci left: 7.863939e-08	ci right 2.345676e-06	k: 2	n:3080000
CCNF   3080000 perm   4384 sec   (703 perm/sec)   p_kst 6.493506e-07   p_cons 2.078149e-02   p_joint 1.298701e-06

Joint ci ratio: 1.753076e+00	ci left: 3.527073e-07	ci right 3.314427e-06	k: 4	n:3090000
Cons ci ratio: 1.530810e-02	ci left: 2.062117e-02	ci right 2.093960e-02	k: 64210	n:3090000
KS ci ratio: 2.263212e+00	ci left: 7.838489e-08	ci right 2.338085e-06	k: 2	n:3090000
CCNF   3090000 perm   4412 sec   (700 perm/sec)   p_kst 6.472492e-07   p_cons 2.077994e-02   p_joint 1.294498e-06

Joint ci ratio: 1.753076e+00	ci left: 3.515696e-07	ci right 3.303735e-06	k: 4	n:3100000
Cons ci ratio: 1.528700e-02	ci left: 2.061185e-02	ci right 2.092969e-02	k: 64388	n:3100000
KS ci ratio: 2.263212e+00	ci left: 7.813203e-08	ci right 2.330542e-06	k: 2	n:3100000
CCNF   3100000 perm   4439 sec   (698 perm/sec)   p_kst 6.451613e-07   p_cons 2.077032e-02   p_joint 1.290323e-06

Joint ci ratio: 1.753076e+00	ci left: 3.504391e-07	ci right 3.293112e-06	k: 4	n:3110000
Cons ci ratio: 1.526020e-02	ci left: 2.061797e-02	ci right 2.093534e-02	k: 64614	n:3110000
KS ci ratio: 2.263212e+00	ci left: 7.788081e-08	ci right 2.323049e-06	k: 2	n:3110000
CCNF   3110000 perm   4469 sec   (696 perm/sec)   p_kst 6.430868e-07   p_cons 2.077621e-02   p_joint 1.286174e-06

Joint ci ratio: 1.753076e+00	ci left: 3.493159e-07	ci right 3.282557e-06	k: 4	n:3120000
Cons ci ratio: 1.523870e-02	ci left: 2.061031e-02	ci right 2.092711e-02	k: 64797	n:3120000
KS ci ratio: 2.263212e+00	ci left: 7.763119e-08	ci right 2.315603e-06	k: 2	n:3120000
CCNF   3120000 perm   4496 sec   (694 perm/sec)   p_kst 6.410256e-07   p_cons 2.076827e-02   p_joint 1.282051e-06

Joint ci ratio: 1.753076e+00	ci left: 3.481999e-07	ci right 3.272070e-06	k: 4	n:3130000
Cons ci ratio: 1.521466e-02	ci left: 2.060971e-02	ci right 2.092600e-02	k: 65002	n:3130000
KS ci ratio: 2.263212e+00	ci left: 7.738317e-08	ci right 2.308205e-06	k: 2	n:3130000
CCNF   3130000 perm   4530 sec   (691 perm/sec)   p_kst 6.389776e-07   p_cons 2.076741e-02   p_joint 1.277955e-06

Joint ci ratio: 1.753076e+00	ci left: 3.470910e-07	ci right 3.261649e-06	k: 4	n:3140000
Cons ci ratio: 1.519192e-02	ci left: 2.060594e-02	ci right 2.092169e-02	k: 65197	n:3140000
KS ci ratio: 2.263212e+00	ci left: 7.713672e-08	ci right 2.300854e-06	k: 2	n:3140000
CCNF   3140000 perm   4560 sec   (689 perm/sec)   p_kst 6.369427e-07   p_cons 2.076338e-02   p_joint 1.273885e-06

Joint ci ratio: 1.753076e+00	ci left: 3.459891e-07	ci right 3.251295e-06	k: 4	n:3150000
Cons ci ratio: 1.516703e-02	ci left: 2.060821e-02	ci right 2.092347e-02	k: 65411	n:3150000
KS ci ratio: 2.263212e+00	ci left: 7.689184e-08	ci right 2.293550e-06	k: 2	n:3150000
CCNF   3150000 perm   4588 sec   (687 perm/sec)   p_kst 6.349206e-07   p_cons 2.076540e-02   p_joint 1.269841e-06

Joint ci ratio: 1.753076e+00	ci left: 3.448942e-07	ci right 3.241006e-06	k: 4	n:3160000
Cons ci ratio: 1.514274e-02	ci left: 2.060919e-02	ci right 2.092396e-02	k: 65621	n:3160000
KS ci ratio: 2.263212e+00	ci left: 7.664851e-08	ci right 2.286292e-06	k: 2	n:3160000
CCNF   3160000 perm   4616 sec   (685 perm/sec)   p_kst 6.329114e-07   p_cons 2.076614e-02   p_joint 1.265823e-06

Joint ci ratio: 1.753076e+00	ci left: 3.438062e-07	ci right 3.230782e-06	k: 4	n:3170000
Cons ci ratio: 1.511868e-02	ci left: 2.060986e-02	ci right 2.092414e-02	k: 65830	n:3170000
KS ci ratio: 2.263212e+00	ci left: 7.640672e-08	ci right 2.279079e-06	k: 2	n:3170000
CCNF   3170000 perm   4648 sec   (682 perm/sec)   p_kst 6.309148e-07   p_cons 2.076656e-02   p_joint 1.261830e-06

Joint ci ratio: 1.753076e+00	ci left: 3.427251e-07	ci right 3.220622e-06	k: 4	n:3180000
Cons ci ratio: 1.509473e-02	ci left: 2.061053e-02	ci right 2.092431e-02	k: 66039	n:3180000
KS ci ratio: 2.263212e+00	ci left: 7.616645e-08	ci right 2.271912e-06	k: 2	n:3180000
CCNF   3180000 perm   4677 sec   (680 perm/sec)   p_kst 6.289308e-07   p_cons 2.076698e-02   p_joint 1.257862e-06

Joint ci ratio: 1.753076e+00	ci left: 3.416507e-07	ci right 3.210526e-06	k: 4	n:3190000
Cons ci ratio: 1.506974e-02	ci left: 2.061431e-02	ci right 2.092763e-02	k: 66258	n:3190000
KS ci ratio: 2.263212e+00	ci left: 7.592768e-08	ci right 2.264791e-06	k: 2	n:3190000
CCNF   3190000 perm   4705 sec   (678 perm/sec)   p_kst 6.269592e-07   p_cons 2.077053e-02   p_joint 1.253918e-06

Joint ci ratio: 1.753076e+00	ci left: 3.405830e-07	ci right 3.200493e-06	k: 4	n:3200000
Cons ci ratio: 1.504834e-02	ci left: 2.060873e-02	ci right 2.092151e-02	k: 66447	n:3200000
KS ci ratio: 2.263212e+00	ci left: 7.569041e-08	ci right 2.257713e-06	k: 2	n:3200000
CCNF   3200000 perm   4733 sec   (676 perm/sec)   p_kst 6.250000e-07   p_cons 2.076469e-02   p_joint 1.250000e-06

Joint ci ratio: 1.753076e+00	ci left: 3.395220e-07	ci right 3.190523e-06	k: 4	n:3210000
Cons ci ratio: 1.502564e-02	ci left: 2.060691e-02	ci right 2.091919e-02	k: 66648	n:3210000
KS ci ratio: 2.263212e+00	ci left: 7.545461e-08	ci right 2.250680e-06	k: 2	n:3210000
CCNF   3210000 perm   4761 sec   (674 perm/sec)   p_kst 6.230530e-07   p_cons 2.076262e-02   p_joint 1.246106e-06

Joint ci ratio: 1.753076e+00	ci left: 3.384676e-07	ci right 3.180615e-06	k: 4	n:3220000
Cons ci ratio: 1.500260e-02	ci left: 2.060634e-02	ci right 2.091813e-02	k: 66853	n:3220000
KS ci ratio: 2.263212e+00	ci left: 7.522028e-08	ci right 2.243690e-06	k: 2	n:3220000
CCNF   3220000 perm   4794 sec   (672 perm/sec)   p_kst 6.211180e-07   p_cons 2.076180e-02   p_joint 1.242236e-06

Joint ci ratio: 1.753076e+00	ci left: 3.374197e-07	ci right 3.170767e-06	k: 4	n:3230000
Cons ci ratio: 1.497714e-02	ci left: 2.061256e-02	ci right 2.092391e-02	k: 67080	n:3230000
KS ci ratio: 2.263212e+00	ci left: 7.498740e-08	ci right 2.236744e-06	k: 2	n:3230000
CCNF   3230000 perm   4823 sec   (670 perm/sec)   p_kst 6.191950e-07   p_cons 2.076780e-02   p_joint 1.238390e-06

Joint ci ratio: 1.753076e+00	ci left: 3.363783e-07	ci right 3.160981e-06	k: 4	n:3240000
Cons ci ratio: 1.495432e-02	ci left: 2.061197e-02	ci right 2.092283e-02	k: 67285	n:3240000
KS ci ratio: 2.263212e+00	ci left: 7.475596e-08	ci right 2.229840e-06	k: 2	n:3240000
CCNF   3240000 perm   4852 sec   (668 perm/sec)   p_kst 6.172840e-07   p_cons 2.076698e-02   p_joint 1.234568e-06

Joint ci ratio: 1.753076e+00	ci left: 3.353433e-07	ci right 3.151255e-06	k: 4	n:3250000
Cons ci ratio: 1.492979e-02	ci left: 2.061630e-02	ci right 2.092671e-02	k: 67506	n:3250000
KS ci ratio: 2.263212e+00	ci left: 7.452594e-08	ci right 2.222979e-06	k: 2	n:3250000
CCNF   3250000 perm   4882 sec   (666 perm/sec)   p_kst 6.153846e-07   p_cons 2.077108e-02   p_joint 1.230769e-06

Joint ci ratio: 1.753076e+00	ci left: 3.343146e-07	ci right 3.141589e-06	k: 4	n:3260000
Cons ci ratio: 1.490729e-02	ci left: 2.061540e-02	ci right 2.092533e-02	k: 67710	n:3260000
KS ci ratio: 2.263212e+00	ci left: 7.429733e-08	ci right 2.216160e-06	k: 2	n:3260000
CCNF   3260000 perm   4911 sec   (664 perm/sec)   p_kst 6.134969e-07   p_cons 2.076994e-02   p_joint 1.226994e-06

Joint ci ratio: 1.753076e+00	ci left: 3.332923e-07	ci right 3.131981e-06	k: 4	n:3270000
Cons ci ratio: 1.488456e-02	ci left: 2.061542e-02	ci right 2.092488e-02	k: 67917	n:3270000
KS ci ratio: 2.263212e+00	ci left: 7.407012e-08	ci right 2.209383e-06	k: 2	n:3270000
CCNF   3270000 perm   4941 sec   (662 perm/sec)   p_kst 6.116208e-07   p_cons 2.076972e-02   p_joint 1.223242e-06

Joint ci ratio: 1.753076e+00	ci left: 3.322761e-07	ci right 3.122433e-06	k: 4	n:3280000
Cons ci ratio: 1.485903e-02	ci left: 2.062335e-02	ci right 2.093238e-02	k: 68150	n:3280000
KS ci ratio: 2.263212e+00	ci left: 7.384430e-08	ci right 2.202647e-06	k: 2	n:3280000
CCNF   3280000 perm   4976 sec   (659 perm/sec)   p_kst 6.097561e-07   p_cons 2.077744e-02   p_joint 1.219512e-06

Joint ci ratio: 1.753076e+00	ci left: 3.312662e-07	ci right 3.112942e-06	k: 4	n:3290000
Cons ci ratio: 1.483519e-02	ci left: 2.062698e-02	ci right 2.093557e-02	k: 68369	n:3290000
KS ci ratio: 2.263212e+00	ci left: 7.361985e-08	ci right 2.195952e-06	k: 2	n:3290000
CCNF   3290000 perm   5006 sec   (657 perm/sec)   p_kst 6.079027e-07   p_cons 2.078085e-02   p_joint 1.215805e-06

Joint ci ratio: 1.753076e+00	ci left: 3.302623e-07	ci right 3.103509e-06	k: 4	n:3300000
Cons ci ratio: 1.481422e-02	ci left: 2.062304e-02	ci right 2.093113e-02	k: 68563	n:3300000
KS ci ratio: 2.263212e+00	ci left: 7.339676e-08	ci right 2.189298e-06	k: 2	n:3300000
CCNF   3300000 perm   5035 sec   (655 perm/sec)   p_kst 6.060606e-07   p_cons 2.077667e-02   p_joint 1.212121e-06

Joint ci ratio: 1.753076e+00	ci left: 3.292646e-07	ci right 3.094133e-06	k: 4	n:3310000
Cons ci ratio: 1.479191e-02	ci left: 2.062304e-02	ci right 2.093067e-02	k: 68770	n:3310000
KS ci ratio: 2.263212e+00	ci left: 7.317502e-08	ci right 2.182683e-06	k: 2	n:3310000
CCNF   3310000 perm   5065 sec   (653 perm/sec)   p_kst 6.042296e-07   p_cons 2.077644e-02   p_joint 1.208459e-06

Joint ci ratio: 1.753076e+00	ci left: 3.282728e-07	ci right 3.084813e-06	k: 4	n:3320000
Cons ci ratio: 1.477068e-02	ci left: 2.062034e-02	ci right 2.092748e-02	k: 68968	n:3320000
KS ci ratio: 2.263212e+00	ci left: 7.295461e-08	ci right 2.176109e-06	k: 2	n:3320000
CCNF   3320000 perm   5095 sec   (652 perm/sec)   p_kst 6.024096e-07   p_cons 2.077349e-02   p_joint 1.204819e-06

Joint ci ratio: 1.753076e+00	ci left: 3.272870e-07	ci right 3.075549e-06	k: 4	n:3330000
Cons ci ratio: 1.474759e-02	ci left: 2.062305e-02	ci right 2.092974e-02	k: 69184	n:3330000
KS ci ratio: 2.263212e+00	ci left: 7.273553e-08	ci right 2.169574e-06	k: 2	n:3330000
CCNF   3330000 perm   5123 sec   (650 perm/sec)   p_kst 6.006006e-07   p_cons 2.077598e-02   p_joint 1.201201e-06

Joint ci ratio: 1.753076e+00	ci left: 3.263071e-07	ci right 3.066341e-06	k: 4	n:3340000
Cons ci ratio: 1.472514e-02	ci left: 2.062424e-02	ci right 2.093048e-02	k: 69395	n:3340000
KS ci ratio: 2.263212e+00	ci left: 7.251776e-08	ci right 2.163078e-06	k: 2	n:3340000
CCNF   3340000 perm   5154 sec   (648 perm/sec)   p_kst 5.988024e-07   p_cons 2.077695e-02   p_joint 1.197605e-06

Joint ci ratio: 1.753076e+00	ci left: 3.253330e-07	ci right 3.057188e-06	k: 4	n:3350000
Cons ci ratio: 1.470011e-02	ci left: 2.063287e-02	ci right 2.093871e-02	k: 69631	n:3350000
KS ci ratio: 2.263212e+00	ci left: 7.230129e-08	ci right 2.156622e-06	k: 2	n:3350000
CCNF   3350000 perm   5184 sec   (646 perm/sec)   p_kst 5.970149e-07   p_cons 2.078537e-02   p_joint 1.194030e-06

Joint ci ratio: 1.753076e+00	ci left: 3.243648e-07	ci right 3.048089e-06	k: 4	n:3360000
Cons ci ratio: 1.468002e-02	ci left: 2.062809e-02	ci right 2.093345e-02	k: 69822	n:3360000
KS ci ratio: 2.263212e+00	ci left: 7.208610e-08	ci right 2.150203e-06	k: 2	n:3360000
CCNF   3360000 perm   5214 sec   (644 perm/sec)   p_kst 5.952381e-07   p_cons 2.078036e-02   p_joint 1.190476e-06

Joint ci ratio: 1.753076e+00	ci left: 3.234023e-07	ci right 3.039044e-06	k: 4	n:3370000
Cons ci ratio: 1.465895e-02	ci left: 2.062631e-02	ci right 2.093119e-02	k: 70023	n:3370000
KS ci ratio: 2.263212e+00	ci left: 7.187220e-08	ci right 2.143823e-06	k: 2	n:3370000
CCNF   3370000 perm   5246 sec   (642 perm/sec)   p_kst 5.934718e-07   p_cons 2.077834e-02   p_joint 1.186944e-06

Joint ci ratio: 1.600332e+00	ci left: 4.803216e-07	ci right 3.452166e-06	k: 5	n:3380000
Cons ci ratio: 1.463542e-02	ci left: 2.063161e-02	ci right 2.093608e-02	k: 70248	n:3380000
KS ci ratio: 2.263212e+00	ci left: 7.165956e-08	ci right 2.137480e-06	k: 2	n:3380000
CCNF   3380000 perm   5275 sec   (641 perm/sec)   p_kst 5.917160e-07   p_cons 2.078343e-02   p_joint 1.479290e-06

Joint ci ratio: 1.600332e+00	ci left: 4.789047e-07	ci right 3.441982e-06	k: 5	n:3390000
Cons ci ratio: 1.461306e-02	ci left: 2.063394e-02	ci right 2.093797e-02	k: 70463	n:3390000
KS ci ratio: 2.263212e+00	ci left: 7.144817e-08	ci right 2.131175e-06	k: 2	n:3390000
CCNF   3390000 perm   5304 sec   (639 perm/sec)   p_kst 5.899705e-07   p_cons 2.078555e-02   p_joint 1.474926e-06

Joint ci ratio: 1.600332e+00	ci left: 4.774962e-07	ci right 3.431859e-06	k: 5	n:3400000
Cons ci ratio: 1.459365e-02	ci left: 2.062834e-02	ci right 2.093189e-02	k: 70651	n:3400000
KS ci ratio: 2.263212e+00	ci left: 7.123803e-08	ci right 2.124907e-06	k: 2	n:3400000
CCNF   3400000 perm   5334 sec   (637 perm/sec)   p_kst 5.882353e-07   p_cons 2.077971e-02   p_joint 1.470588e-06

Joint ci ratio: 1.600332e+00	ci left: 4.760959e-07	ci right 3.421795e-06	k: 5	n:3410000
Cons ci ratio: 1.457295e-02	ci left: 2.062658e-02	ci right 2.092966e-02	k: 70852	n:3410000
KS ci ratio: 2.263212e+00	ci left: 7.102912e-08	ci right 2.118675e-06	k: 2	n:3410000
CCNF   3410000 perm   5363 sec   (636 perm/sec)   p_kst 5.865103e-07   p_cons 2.077771e-02   p_joint 1.466276e-06

Joint ci ratio: 1.600332e+00	ci left: 4.747038e-07	ci right 3.411790e-06	k: 5	n:3420000
Cons ci ratio: 1.454962e-02	ci left: 2.063240e-02	ci right 2.093508e-02	k: 71079	n:3420000
KS ci ratio: 2.263212e+00	ci left: 7.082143e-08	ci right 2.112480e-06	k: 2	n:3420000
CCNF   3420000 perm   5392 sec   (634 perm/sec)   p_kst 5.847953e-07   p_cons 2.078333e-02   p_joint 1.461988e-06

Joint ci ratio: 1.600332e+00	ci left: 4.733198e-07	ci right 3.401843e-06	k: 5	n:3430000
Cons ci ratio: 1.452963e-02	ci left: 2.062918e-02	ci right 2.093139e-02	k: 71275	n:3430000
KS ci ratio: 2.263212e+00	ci left: 7.061496e-08	ci right 2.106321e-06	k: 2	n:3430000
CCNF   3430000 perm   5422 sec   (633 perm/sec)   p_kst 5.830904e-07   p_cons 2.077988e-02   p_joint 1.457726e-06

Joint ci ratio: 1.600332e+00	ci left: 4.719439e-07	ci right 3.391954e-06	k: 5	n:3440000
Cons ci ratio: 1.451169e-02	ci left: 2.062048e-02	ci right 2.092219e-02	k: 71452	n:3440000
KS ci ratio: 2.263212e+00	ci left: 7.040968e-08	ci right 2.100198e-06	k: 2	n:3440000
CCNF   3440000 perm   5452 sec   (631 perm/sec)   p_kst 5.813953e-07   p_cons 2.077093e-02   p_joint 1.453488e-06

Joint ci ratio: 1.600332e+00	ci left: 4.705759e-07	ci right 3.382122e-06	k: 5	n:3450000
Cons ci ratio: 1.449154e-02	ci left: 2.061818e-02	ci right 2.091943e-02	k: 71651	n:3450000
KS ci ratio: 2.263212e+00	ci left: 7.020560e-08	ci right 2.094111e-06	k: 2	n:3450000
CCNF   3450000 perm   5486 sec   (629 perm/sec)   p_kst 5.797101e-07   p_cons 2.076841e-02   p_joint 1.449275e-06

Joint ci ratio: 1.600332e+00	ci left: 4.692159e-07	ci right 3.372347e-06	k: 5	n:3460000
Cons ci ratio: 1.446921e-02	ci left: 2.062223e-02	ci right 2.092308e-02	k: 71872	n:3460000
KS ci ratio: 2.263212e+00	ci left: 7.000269e-08	ci right 2.088058e-06	k: 2	n:3460000
CCNF   3460000 perm   5514 sec   (627 perm/sec)   p_kst 5.780347e-07   p_cons 2.077225e-02   p_joint 1.445087e-06

Joint ci ratio: 1.600332e+00	ci left: 4.678637e-07	ci right 3.362628e-06	k: 5	n:3470000
Cons ci ratio: 1.444986e-02	ci left: 2.061822e-02	ci right 2.091860e-02	k: 72065	n:3470000
KS ci ratio: 2.263212e+00	ci left: 6.980095e-08	ci right 2.082041e-06	k: 2	n:3470000
CCNF   3470000 perm   5543 sec   (626 perm/sec)   p_kst 5.763689e-07   p_cons 2.076801e-02   p_joint 1.440922e-06

Joint ci ratio: 1.600332e+00	ci left: 4.665192e-07	ci right 3.352966e-06	k: 5	n:3480000
Cons ci ratio: 1.442895e-02	ci left: 2.061881e-02	ci right 2.091877e-02	k: 72274	n:3480000
KS ci ratio: 2.263212e+00	ci left: 6.960038e-08	ci right 2.076058e-06	k: 2	n:3480000
CCNF   3480000 perm   5573 sec   (624 perm/sec)   p_kst 5.747126e-07   p_cons 2.076839e-02   p_joint 1.436782e-06

Joint ci ratio: 1.600332e+00	ci left: 4.651825e-07	ci right 3.343358e-06	k: 5	n:3490000
Cons ci ratio: 1.440873e-02	ci left: 2.061769e-02	ci right 2.091720e-02	k: 72477	n:3490000
KS ci ratio: 2.263212e+00	ci left: 6.940095e-08	ci right 2.070110e-06	k: 2	n:3490000
CCNF   3490000 perm   5604 sec   (623 perm/sec)   p_kst 5.730659e-07   p_cons 2.076705e-02   p_joint 1.432665e-06

Joint ci ratio: 1.600332e+00	ci left: 4.638534e-07	ci right 3.333806e-06	k: 5	n:3500000
Cons ci ratio: 1.438942e-02	ci left: 2.061430e-02	ci right 2.091335e-02	k: 72672	n:3500000
KS ci ratio: 2.263212e+00	ci left: 6.920266e-08	ci right 2.064195e-06	k: 2	n:3500000
CCNF   3500000 perm   5634 sec   (621 perm/sec)   p_kst 5.714286e-07   p_cons 2.076343e-02   p_joint 1.428571e-06

Joint ci ratio: 1.600332e+00	ci left: 4.625319e-07	ci right 3.324308e-06	k: 5	n:3510000
Cons ci ratio: 1.436675e-02	ci left: 2.062058e-02	ci right 2.091925e-02	k: 72901	n:3510000
KS ci ratio: 2.263212e+00	ci left: 6.900550e-08	ci right 2.058314e-06	k: 2	n:3510000
CCNF   3510000 perm   5665 sec   (620 perm/sec)   p_kst 5.698006e-07   p_cons 2.076952e-02   p_joint 1.424501e-06

Joint ci ratio: 1.600332e+00	ci left: 4.612179e-07	ci right 3.314864e-06	k: 5	n:3520000
Cons ci ratio: 1.434841e-02	ci left: 2.061493e-02	ci right 2.091313e-02	k: 73088	n:3520000
KS ci ratio: 2.263212e+00	ci left: 6.880946e-08	ci right 2.052467e-06	k: 2	n:3520000
CCNF   3520000 perm   5696 sec   (618 perm/sec)   p_kst 5.681818e-07   p_cons 2.076364e-02   p_joint 1.420455e-06

Joint ci ratio: 1.600332e+00	ci left: 4.599113e-07	ci right 3.305473e-06	k: 5	n:3530000
Cons ci ratio: 1.432574e-02	ci left: 2.062173e-02	ci right 2.091956e-02	k: 73319	n:3530000
KS ci ratio: 2.263212e+00	ci left: 6.861453e-08	ci right 2.046652e-06	k: 2	n:3530000
CCNF   3530000 perm   5727 sec   (616 perm/sec)   p_kst 5.665722e-07   p_cons 2.077025e-02   p_joint 1.416431e-06

Joint ci ratio: 1.600332e+00	ci left: 4.586121e-07	ci right 3.296136e-06	k: 5	n:3540000
Cons ci ratio: 1.430397e-02	ci left: 2.062625e-02	ci right 2.092369e-02	k: 73542	n:3540000
KS ci ratio: 2.263212e+00	ci left: 6.842071e-08	ci right 2.040871e-06	k: 2	n:3540000
CCNF   3540000 perm   5758 sec   (615 perm/sec)   p_kst 5.649718e-07   p_cons 2.077458e-02   p_joint 1.412429e-06

Joint ci ratio: 1.600332e+00	ci left: 4.573203e-07	ci right 3.286851e-06	k: 5	n:3550000
Cons ci ratio: 1.428468e-02	ci left: 2.062400e-02	ci right 2.092100e-02	k: 73741	n:3550000
KS ci ratio: 2.263212e+00	ci left: 6.822797e-08	ci right 2.035122e-06	k: 2	n:3550000
CCNF   3550000 perm   5788 sec   (613 perm/sec)   p_kst 5.633803e-07   p_cons 2.077211e-02   p_joint 1.408451e-06

Joint ci ratio: 1.600332e+00	ci left: 4.560357e-07	ci right 3.277618e-06	k: 5	n:3560000
Cons ci ratio: 1.426280e-02	ci left: 2.062933e-02	ci right 2.092595e-02	k: 73967	n:3560000
KS ci ratio: 2.263212e+00	ci left: 6.803632e-08	ci right 2.029405e-06	k: 2	n:3560000
CCNF   3560000 perm   5817 sec   (612 perm/sec)   p_kst 5.617978e-07   p_cons 2.077725e-02   p_joint 1.404494e-06

Joint ci ratio: 1.600332e+00	ci left: 4.547582e-07	ci right 3.268437e-06	k: 5	n:3570000
Cons ci ratio: 1.424367e-02	ci left: 2.062709e-02	ci right 2.092327e-02	k: 74166	n:3570000
KS ci ratio: 2.263212e+00	ci left: 6.784574e-08	ci right 2.023721e-06	k: 2	n:3570000
CCNF   3570000 perm   5847 sec   (611 perm/sec)   p_kst 5.602241e-07   p_cons 2.077479e-02   p_joint 1.400560e-06

Joint ci ratio: 1.600332e+00	ci left: 4.534880e-07	ci right 3.259308e-06	k: 5	n:3580000
Cons ci ratio: 1.422364e-02	ci left: 2.062764e-02	ci right 2.092341e-02	k: 74375	n:3580000
KS ci ratio: 2.263212e+00	ci left: 6.765623e-08	ci right 2.018068e-06	k: 2	n:3580000
CCNF   3580000 perm   5878 sec   (609 perm/sec)   p_kst 5.586592e-07   p_cons 2.077514e-02   p_joint 1.396648e-06

Joint ci ratio: 1.600332e+00	ci left: 4.522248e-07	ci right 3.250229e-06	k: 5	n:3590000
Cons ci ratio: 1.420360e-02	ci left: 2.062847e-02	ci right 2.092384e-02	k: 74585	n:3590000
KS ci ratio: 2.263212e+00	ci left: 6.746777e-08	ci right 2.012446e-06	k: 2	n:3590000
CCNF   3590000 perm   5909 sec   (608 perm/sec)   p_kst 5.571031e-07   p_cons 2.077577e-02   p_joint 1.392758e-06

Joint ci ratio: 1.600332e+00	ci left: 4.509686e-07	ci right 3.241200e-06	k: 5	n:3600000
Cons ci ratio: 1.418161e-02	ci left: 2.063511e-02	ci right 2.093011e-02	k: 74816	n:3600000
KS ci ratio: 2.263212e+00	ci left: 6.728036e-08	ci right 2.006856e-06	k: 2	n:3600000
CCNF   3600000 perm   5939 sec   (606 perm/sec)   p_kst 5.555556e-07   p_cons 2.078222e-02   p_joint 1.388889e-06

Joint ci ratio: 1.600332e+00	ci left: 4.497194e-07	ci right 3.232222e-06	k: 5	n:3610000
Cons ci ratio: 1.416030e-02	ci left: 2.064005e-02	ci right 2.093468e-02	k: 75041	n:3610000
KS ci ratio: 2.263212e+00	ci left: 6.709399e-08	ci right 2.001297e-06	k: 2	n:3610000
CCNF   3610000 perm   5969 sec   (605 perm/sec)   p_kst 5.540166e-07   p_cons 2.078698e-02   p_joint 1.385042e-06

Joint ci ratio: 1.600332e+00	ci left: 4.484771e-07	ci right 3.223293e-06	k: 5	n:3620000
Cons ci ratio: 1.414167e-02	ci left: 2.063754e-02	ci right 2.093174e-02	k: 75239	n:3620000
KS ci ratio: 2.263212e+00	ci left: 6.690865e-08	ci right 1.995769e-06	k: 2	n:3620000
CCNF   3620000 perm   5999 sec   (603 perm/sec)   p_kst 5.524862e-07   p_cons 2.078425e-02   p_joint 1.381215e-06

Joint ci ratio: 1.600332e+00	ci left: 4.472416e-07	ci right 3.214414e-06	k: 5	n:3630000
Cons ci ratio: 1.412054e-02	ci left: 2.064245e-02	ci right 2.093628e-02	k: 75464	n:3630000
KS ci ratio: 2.263212e+00	ci left: 6.672433e-08	ci right 1.990271e-06	k: 2	n:3630000
CCNF   3630000 perm   6034 sec   (602 perm/sec)   p_kst 5.509642e-07   p_cons 2.078898e-02   p_joint 1.377410e-06

Joint ci ratio: 1.600332e+00	ci left: 4.460129e-07	ci right 3.205583e-06	k: 5	n:3640000
Cons ci ratio: 1.410188e-02	ci left: 2.064049e-02	ci right 2.093390e-02	k: 75664	n:3640000
KS ci ratio: 2.263212e+00	ci left: 6.654102e-08	ci right 1.984803e-06	k: 2	n:3640000
CCNF   3640000 perm   6065 sec   (600 perm/sec)   p_kst 5.494505e-07   p_cons 2.078681e-02   p_joint 1.373626e-06

Joint ci ratio: 1.600332e+00	ci left: 4.447909e-07	ci right 3.196800e-06	k: 5	n:3650000
Cons ci ratio: 1.408481e-02	ci left: 2.063418e-02	ci right 2.092713e-02	k: 75848	n:3650000
KS ci ratio: 2.263212e+00	ci left: 6.635871e-08	ci right 1.979365e-06	k: 2	n:3650000
CCNF   3650000 perm   6095 sec   (599 perm/sec)   p_kst 5.479452e-07   p_cons 2.078027e-02   p_joint 1.369863e-06

Joint ci ratio: 1.600332e+00	ci left: 4.435757e-07	ci right 3.188066e-06	k: 5	n:3660000
Cons ci ratio: 1.406460e-02	ci left: 2.063715e-02	ci right 2.092973e-02	k: 76066	n:3660000
KS ci ratio: 2.263212e+00	ci left: 6.617741e-08	ci right 1.973957e-06	k: 2	n:3660000
CCNF   3660000 perm   6125 sec   (598 perm/sec)   p_kst 5.464481e-07   p_cons 2.078306e-02   p_joint 1.366120e-06

Joint ci ratio: 1.600332e+00	ci left: 4.423670e-07	ci right 3.179379e-06	k: 5	n:3670000
Cons ci ratio: 1.404588e-02	ci left: 2.063604e-02	ci right 2.092821e-02	k: 76269	n:3670000
KS ci ratio: 2.263212e+00	ci left: 6.599709e-08	ci right 1.968578e-06	k: 2	n:3670000
CCNF   3670000 perm   6158 sec   (596 perm/sec)   p_kst 5.449591e-07   p_cons 2.078174e-02   p_joint 1.362398e-06

Joint ci ratio: 1.600332e+00	ci left: 4.411649e-07	ci right 3.170740e-06	k: 5	n:3680000
Cons ci ratio: 1.402601e-02	ci left: 2.063845e-02	ci right 2.093024e-02	k: 76485	n:3680000
KS ci ratio: 2.263212e+00	ci left: 6.581775e-08	ci right 1.963229e-06	k: 2	n:3680000
CCNF   3680000 perm   6190 sec   (594 perm/sec)   p_kst 5.434783e-07   p_cons 2.078397e-02   p_joint 1.358696e-06

Joint ci ratio: 1.600332e+00	ci left: 4.399694e-07	ci right 3.162147e-06	k: 5	n:3690000
Cons ci ratio: 1.400642e-02	ci left: 2.064031e-02	ci right 2.093171e-02	k: 76699	n:3690000
KS ci ratio: 2.263212e+00	ci left: 6.563938e-08	ci right 1.957909e-06	k: 2	n:3690000
CCNF   3690000 perm   6221 sec   (593 perm/sec)   p_kst 5.420054e-07   p_cons 2.078564e-02   p_joint 1.355014e-06

Joint ci ratio: 1.600332e+00	ci left: 4.387802e-07	ci right 3.153600e-06	k: 5	n:3700000
Cons ci ratio: 1.398821e-02	ci left: 2.063839e-02	ci right 2.092938e-02	k: 76899	n:3700000
KS ci ratio: 2.263212e+00	ci left: 6.546197e-08	ci right 1.952617e-06	k: 2	n:3700000
CCNF   3700000 perm   6253 sec   (592 perm/sec)   p_kst 5.405405e-07   p_cons 2.078351e-02   p_joint 1.351351e-06

Joint ci ratio: 1.600332e+00	ci left: 4.375975e-07	ci right 3.145100e-06	k: 5	n:3710000
Cons ci ratio: 1.396933e-02	ci left: 2.063863e-02	ci right 2.092923e-02	k: 77107	n:3710000
KS ci ratio: 2.263212e+00	ci left: 6.528553e-08	ci right 1.947354e-06	k: 2	n:3710000
CCNF   3710000 perm   6283 sec   (590 perm/sec)   p_kst 5.390836e-07   p_cons 2.078356e-02   p_joint 1.347709e-06

Joint ci ratio: 1.600332e+00	ci left: 4.364212e-07	ci right 3.136646e-06	k: 5	n:3720000
Cons ci ratio: 1.394942e-02	ci left: 2.064209e-02	ci right 2.093232e-02	k: 77327	n:3720000
KS ci ratio: 2.263212e+00	ci left: 6.511003e-08	ci right 1.942119e-06	k: 2	n:3720000
CCNF   3720000 perm   6314 sec   (589 perm/sec)   p_kst 5.376344e-07   p_cons 2.078683e-02   p_joint 1.344086e-06

Joint ci ratio: 1.600332e+00	ci left: 4.352512e-07	ci right 3.128236e-06	k: 5	n:3730000
Cons ci ratio: 1.393106e-02	ci left: 2.064125e-02	ci right 2.093108e-02	k: 77531	n:3730000
KS ci ratio: 2.263212e+00	ci left: 6.493547e-08	ci right 1.936912e-06	k: 2	n:3730000
CCNF   3730000 perm   6345 sec   (588 perm/sec)   p_kst 5.361930e-07   p_cons 2.078579e-02   p_joint 1.340483e-06

Joint ci ratio: 1.600332e+00	ci left: 4.340874e-07	ci right 3.119872e-06	k: 5	n:3740000
Cons ci ratio: 1.391443e-02	ci left: 2.063562e-02	ci right 2.092502e-02	k: 77717	n:3740000
KS ci ratio: 2.263212e+00	ci left: 6.476185e-08	ci right 1.931733e-06	k: 2	n:3740000
CCNF   3740000 perm   6376 sec   (587 perm/sec)   p_kst 5.347594e-07   p_cons 2.077995e-02   p_joint 1.336898e-06

Joint ci ratio: 1.600332e+00	ci left: 4.329298e-07	ci right 3.111552e-06	k: 5	n:3750000
Cons ci ratio: 1.389375e-02	ci left: 2.064197e-02	ci right 2.093103e-02	k: 77948	n:3750000
KS ci ratio: 2.263212e+00	ci left: 6.458915e-08	ci right 1.926582e-06	k: 2	n:3750000
CCNF   3750000 perm   6407 sec   (585 perm/sec)   p_kst 5.333333e-07   p_cons 2.078613e-02   p_joint 1.333333e-06

Joint ci ratio: 1.600332e+00	ci left: 4.317784e-07	ci right 3.103277e-06	k: 5	n:3760000
Cons ci ratio: 1.387752e-02	ci left: 2.063558e-02	ci right 2.092421e-02	k: 78131	n:3760000
KS ci ratio: 2.263212e+00	ci left: 6.441737e-08	ci right 1.921458e-06	k: 2	n:3760000
CCNF   3760000 perm   6438 sec   (584 perm/sec)   p_kst 5.319149e-07   p_cons 2.077952e-02   p_joint 1.329787e-06

Joint ci ratio: 1.600332e+00	ci left: 4.306331e-07	ci right 3.095046e-06	k: 5	n:3770000
Cons ci ratio: 1.385763e-02	ci left: 2.064005e-02	ci right 2.092833e-02	k: 78355	n:3770000
KS ci ratio: 2.263212e+00	ci left: 6.424650e-08	ci right 1.916361e-06	k: 2	n:3770000
CCNF   3770000 perm   6471 sec   (583 perm/sec)   p_kst 5.305040e-07   p_cons 2.078382e-02   p_joint 1.326260e-06

Joint ci ratio: 1.600332e+00	ci left: 4.294939e-07	ci right 3.086858e-06	k: 5	n:3780000
Cons ci ratio: 1.384072e-02	ci left: 2.063606e-02	ci right 2.092393e-02	k: 78547	n:3780000
KS ci ratio: 2.263212e+00	ci left: 6.407654e-08	ci right 1.911292e-06	k: 2	n:3780000
CCNF   3780000 perm   6503 sec   (581 perm/sec)   p_kst 5.291005e-07   p_cons 2.077963e-02   p_joint 1.322751e-06

Joint ci ratio: 1.600332e+00	ci left: 4.283607e-07	ci right 3.078713e-06	k: 5	n:3790000
Cons ci ratio: 1.382377e-02	ci left: 2.063236e-02	ci right 2.091982e-02	k: 78740	n:3790000
KS ci ratio: 2.263212e+00	ci left: 6.390747e-08	ci right 1.906249e-06	k: 2	n:3790000
CCNF   3790000 perm   6536 sec   (580 perm/sec)   p_kst 5.277045e-07   p_cons 2.077573e-02   p_joint 1.319261e-06

Joint ci ratio: 1.600332e+00	ci left: 4.272334e-07	ci right 3.070611e-06	k: 5	n:3800000
Cons ci ratio: 1.380448e-02	ci left: 2.063576e-02	ci right 2.092286e-02	k: 78960	n:3800000
KS ci ratio: 2.263212e+00	ci left: 6.373929e-08	ci right 1.901232e-06	k: 2	n:3800000
CCNF   3800000 perm   6568 sec   (579 perm/sec)   p_kst 5.263158e-07   p_cons 2.077895e-02   p_joint 1.315789e-06

Joint ci ratio: 1.600332e+00	ci left: 4.261120e-07	ci right 3.062552e-06	k: 5	n:3810000
Cons ci ratio: 1.378775e-02	ci left: 2.063182e-02	ci right 2.091852e-02	k: 79152	n:3810000
KS ci ratio: 2.263212e+00	ci left: 6.357200e-08	ci right 1.896242e-06	k: 2	n:3810000
CCNF   3810000 perm   6602 sec   (577 perm/sec)   p_kst 5.249344e-07   p_cons 2.077480e-02   p_joint 1.312336e-06

Joint ci ratio: 1.600332e+00	ci left: 4.249966e-07	ci right 3.054535e-06	k: 5	n:3820000
Cons ci ratio: 1.377056e-02	ci left: 2.062946e-02	ci right 2.091577e-02	k: 79350	n:3820000
KS ci ratio: 2.263212e+00	ci left: 6.340558e-08	ci right 1.891278e-06	k: 2	n:3820000
CCNF   3820000 perm   6634 sec   (576 perm/sec)   p_kst 5.235602e-07   p_cons 2.077225e-02   p_joint 1.308901e-06

Joint ci ratio: 1.600332e+00	ci left: 4.238869e-07	ci right 3.046559e-06	k: 5	n:3830000
Cons ci ratio: 1.375122e-02	ci left: 2.063362e-02	ci right 2.091958e-02	k: 79573	n:3830000
KS ci ratio: 2.263212e+00	ci left: 6.324003e-08	ci right 1.886340e-06	k: 2	n:3830000
CCNF   3830000 perm   6666 sec   (575 perm/sec)   p_kst 5.221932e-07   p_cons 2.077624e-02   p_joint 1.305483e-06

Joint ci ratio: 1.600332e+00	ci left: 4.227830e-07	ci right 3.038626e-06	k: 5	n:3840000
Cons ci ratio: 1.373390e-02	ci left: 2.063205e-02	ci right 2.091763e-02	k: 79774	n:3840000
KS ci ratio: 2.263212e+00	ci left: 6.307534e-08	ci right 1.881428e-06	k: 2	n:3840000
CCNF   3840000 perm   6699 sec   (573 perm/sec)   p_kst 5.208333e-07   p_cons 2.077448e-02   p_joint 1.302083e-06

Joint ci ratio: 1.600332e+00	ci left: 4.216849e-07	ci right 3.030733e-06	k: 5	n:3850000
Cons ci ratio: 1.371481e-02	ci left: 2.063593e-02	ci right 2.092116e-02	k: 79996	n:3850000
KS ci ratio: 2.263212e+00	ci left: 6.291151e-08	ci right 1.876541e-06	k: 2	n:3850000
CCNF   3850000 perm   6732 sec   (572 perm/sec)   p_kst 5.194805e-07   p_cons 2.077818e-02   p_joint 1.298701e-06

Joint ci ratio: 1.600332e+00	ci left: 4.205925e-07	ci right 3.022881e-06	k: 5	n:3860000
Cons ci ratio: 1.369527e-02	ci left: 2.064133e-02	ci right 2.092622e-02	k: 80224	n:3860000
KS ci ratio: 2.263212e+00	ci left: 6.274852e-08	ci right 1.871679e-06	k: 2	n:3860000
CCNF   3860000 perm   6765 sec   (571 perm/sec)   p_kst 5.181347e-07   p_cons 2.078342e-02   p_joint 1.295337e-06

Joint ci ratio: 1.600332e+00	ci left: 4.195057e-07	ci right 3.015070e-06	k: 5	n:3870000
Cons ci ratio: 1.367911e-02	ci left: 2.063692e-02	ci right 2.092142e-02	k: 80414	n:3870000
KS ci ratio: 2.263212e+00	ci left: 6.258638e-08	ci right 1.866843e-06	k: 2	n:3870000
CCNF   3870000 perm   6797 sec   (569 perm/sec)   p_kst 5.167959e-07   p_cons 2.077881e-02   p_joint 1.291990e-06

Joint ci ratio: 1.600332e+00	ci left: 4.184245e-07	ci right 3.007300e-06	k: 5	n:3880000
Cons ci ratio: 1.366284e-02	ci left: 2.063305e-02	ci right 2.091715e-02	k: 80606	n:3880000
KS ci ratio: 2.263212e+00	ci left: 6.242508e-08	ci right 1.862032e-06	k: 2	n:3880000
CCNF   3880000 perm   6829 sec   (568 perm/sec)   p_kst 5.154639e-07   p_cons 2.077474e-02   p_joint 1.288660e-06

Joint ci ratio: 1.600332e+00	ci left: 4.173488e-07	ci right 2.999569e-06	k: 5	n:3890000
Cons ci ratio: 1.364697e-02	ci left: 2.062817e-02	ci right 2.091187e-02	k: 80794	n:3890000
KS ci ratio: 2.263212e+00	ci left: 6.226460e-08	ci right 1.857245e-06	k: 2	n:3890000
CCNF   3890000 perm   6861 sec   (567 perm/sec)   p_kst 5.141388e-07   p_cons 2.076967e-02   p_joint 1.285347e-06

Joint ci ratio: 1.600332e+00	ci left: 4.162787e-07	ci right 2.991877e-06	k: 5	n:3900000
Cons ci ratio: 1.362754e-02	ci left: 2.063406e-02	ci right 2.091743e-02	k: 81024	n:3900000
KS ci ratio: 2.263212e+00	ci left: 6.210495e-08	ci right 1.852483e-06	k: 2	n:3900000
CCNF   3900000 perm   6893 sec   (566 perm/sec)   p_kst 5.128205e-07   p_cons 2.077538e-02   p_joint 1.282051e-06

Joint ci ratio: 1.600332e+00	ci left: 4.152140e-07	ci right 2.984226e-06	k: 5	n:3910000
Cons ci ratio: 1.360735e-02	ci left: 2.064246e-02	ci right 2.092552e-02	k: 81264	n:3910000
KS ci ratio: 2.263212e+00	ci left: 6.194611e-08	ci right 1.847745e-06	k: 2	n:3910000
CCNF   3910000 perm   6926 sec   (565 perm/sec)   p_kst 5.115090e-07   p_cons 2.078363e-02   p_joint 1.278772e-06

Joint ci ratio: 1.600332e+00	ci left: 4.141548e-07	ci right 2.976613e-06	k: 5	n:3920000
Cons ci ratio: 1.358929e-02	ci left: 2.064471e-02	ci right 2.092743e-02	k: 81480	n:3920000
KS ci ratio: 2.263212e+00	ci left: 6.178809e-08	ci right 1.843031e-06	k: 2	n:3920000
CCNF   3920000 perm   6958 sec   (563 perm/sec)   p_kst 5.102041e-07   p_cons 2.078571e-02   p_joint 1.275510e-06

Joint ci ratio: 1.600332e+00	ci left: 4.131010e-07	ci right 2.969039e-06	k: 5	n:3930000
Cons ci ratio: 1.357308e-02	ci left: 2.064163e-02	ci right 2.092396e-02	k: 81675	n:3930000
KS ci ratio: 2.263212e+00	ci left: 6.163087e-08	ci right 1.838342e-06	k: 2	n:3930000
CCNF   3930000 perm   6990 sec   (562 perm/sec)   p_kst 5.089059e-07   p_cons 2.078244e-02   p_joint 1.272265e-06

Joint ci ratio: 1.600332e+00	ci left: 4.120525e-07	ci right 2.961503e-06	k: 5	n:3940000
Cons ci ratio: 1.355583e-02	ci left: 2.064185e-02	ci right 2.092383e-02	k: 81883	n:3940000
KS ci ratio: 2.263212e+00	ci left: 6.147444e-08	ci right 1.833676e-06	k: 2	n:3940000
CCNF   3940000 perm   7023 sec   (561 perm/sec)   p_kst 5.076142e-07   p_cons 2.078249e-02   p_joint 1.269036e-06

Joint ci ratio: 1.600332e+00	ci left: 4.110093e-07	ci right 2.954006e-06	k: 5	n:3950000
Cons ci ratio: 1.353890e-02	ci left: 2.064132e-02	ci right 2.092293e-02	k: 82088	n:3950000
KS ci ratio: 2.263212e+00	ci left: 6.131881e-08	ci right 1.829034e-06	k: 2	n:3950000
CCNF   3950000 perm   7056 sec   (560 perm/sec)   p_kst 5.063291e-07   p_cons 2.078177e-02   p_joint 1.265823e-06

Joint ci ratio: 1.600332e+00	ci left: 4.099714e-07	ci right 2.946546e-06	k: 5	n:3960000
Cons ci ratio: 1.352186e-02	ci left: 2.064129e-02	ci right 2.092254e-02	k: 82295	n:3960000
KS ci ratio: 2.263212e+00	ci left: 6.116397e-08	ci right 1.824415e-06	k: 2	n:3960000
CCNF   3960000 perm   7088 sec   (559 perm/sec)   p_kst 5.050505e-07   p_cons 2.078157e-02   p_joint 1.262626e-06

Joint ci ratio: 1.600332e+00	ci left: 4.089388e-07	ci right 2.939124e-06	k: 5	n:3970000
Cons ci ratio: 1.350430e-02	ci left: 2.064302e-02	ci right 2.092393e-02	k: 82509	n:3970000
KS ci ratio: 2.263212e+00	ci left: 6.100990e-08	ci right 1.819819e-06	k: 2	n:3970000
CCNF   3970000 perm   7123 sec   (557 perm/sec)   p_kst 5.037783e-07   p_cons 2.078312e-02   p_joint 1.259446e-06

Joint ci ratio: 1.600332e+00	ci left: 4.079113e-07	ci right 2.931739e-06	k: 5	n:3980000
Cons ci ratio: 1.348714e-02	ci left: 2.064374e-02	ci right 2.092430e-02	k: 82719	n:3980000
KS ci ratio: 2.263212e+00	ci left: 6.085661e-08	ci right 1.815247e-06	k: 2	n:3980000
CCNF   3980000 perm   7156 sec   (556 perm/sec)   p_kst 5.025126e-07   p_cons 2.078367e-02   p_joint 1.256281e-06

Joint ci ratio: 1.600332e+00	ci left: 4.068889e-07	ci right 2.924392e-06	k: 5	n:3990000
Cons ci ratio: 1.347005e-02	ci left: 2.064445e-02	ci right 2.092466e-02	k: 82929	n:3990000
KS ci ratio: 2.263212e+00	ci left: 6.070409e-08	ci right 1.810697e-06	k: 2	n:3990000
CCNF   3990000 perm   7189 sec   (555 perm/sec)   p_kst 5.012531e-07   p_cons 2.078421e-02   p_joint 1.253133e-06

Joint ci ratio: 1.600332e+00	ci left: 4.058717e-07	ci right 2.917081e-06	k: 5	n:4000000
Cons ci ratio: 1.345138e-02	ci left: 2.065015e-02	ci right 2.093005e-02	k: 83159	n:4000000
KS ci ratio: 2.263212e+00	ci left: 6.055233e-08	ci right 1.806171e-06	k: 2	n:4000000
CCNF   4000000 perm   7222 sec   (554 perm/sec)   p_kst 5.000000e-07   p_cons 2.078975e-02   p_joint 1.250000e-06

Joint ci ratio: 1.600332e+00	ci left: 4.048596e-07	ci right 2.909806e-06	k: 5	n:4010000
Cons ci ratio: 1.343434e-02	ci left: 2.065109e-02	ci right 2.093065e-02	k: 83370	n:4010000
KS ci ratio: 2.263212e+00	ci left: 6.040132e-08	ci right 1.801667e-06	k: 2	n:4010000
CCNF   4010000 perm   7254 sec   (553 perm/sec)   p_kst 4.987531e-07   p_cons 2.079052e-02   p_joint 1.246883e-06

Joint ci ratio: 1.600332e+00	ci left: 4.038525e-07	ci right 2.902568e-06	k: 5	n:4020000
Cons ci ratio: 1.341720e-02	ci left: 2.065253e-02	ci right 2.093174e-02	k: 83583	n:4020000
KS ci ratio: 2.263212e+00	ci left: 6.025107e-08	ci right 1.797185e-06	k: 2	n:4020000
CCNF   4020000 perm   7288 sec   (552 perm/sec)   p_kst 4.975124e-07   p_cons 2.079179e-02   p_joint 1.243781e-06

Joint ci ratio: 1.600332e+00	ci left: 4.028503e-07	ci right 2.895365e-06	k: 5	n:4030000
Cons ci ratio: 1.340258e-02	ci left: 2.064654e-02	ci right 2.092537e-02	k: 83766	n:4030000
KS ci ratio: 2.263212e+00	ci left: 6.010156e-08	ci right 1.792725e-06	k: 2	n:4030000
CCNF   4030000 perm   7321 sec   (551 perm/sec)   p_kst 4.962779e-07   p_cons 2.078561e-02   p_joint 1.240695e-06

Joint ci ratio: 1.600332e+00	ci left: 4.018532e-07	ci right 2.888199e-06	k: 5	n:4040000
Cons ci ratio: 1.338548e-02	ci left: 2.064823e-02	ci right 2.092672e-02	k: 83980	n:4040000
KS ci ratio: 2.263212e+00	ci left: 5.995280e-08	ci right 1.788288e-06	k: 2	n:4040000
CCNF   4040000 perm   7353 sec   (549 perm/sec)   p_kst 4.950495e-07   p_cons 2.078713e-02   p_joint 1.237624e-06

Joint ci ratio: 1.600332e+00	ci left: 4.008610e-07	ci right 2.881067e-06	k: 5	n:4050000
Cons ci ratio: 1.336731e-02	ci left: 2.065335e-02	ci right 2.093153e-02	k: 84208	n:4050000
KS ci ratio: 2.263212e+00	ci left: 5.980477e-08	ci right 1.783872e-06	k: 2	n:4050000
CCNF   4050000 perm   7386 sec   (548 perm/sec)   p_kst 4.938272e-07   p_cons 2.079210e-02   p_joint 1.234568e-06

Joint ci ratio: 1.600332e+00	ci left: 3.998736e-07	ci right 2.873971e-06	k: 5	n:4060000
Cons ci ratio: 1.335132e-02	ci left: 2.065207e-02	ci right 2.092990e-02	k: 84410	n:4060000
KS ci ratio: 2.263212e+00	ci left: 5.965746e-08	ci right 1.779479e-06	k: 2	n:4060000
CCNF   4060000 perm   7420 sec   (547 perm/sec)   p_kst 4.926108e-07   p_cons 2.079064e-02   p_joint 1.231527e-06

Joint ci ratio: 1.600332e+00	ci left: 3.988911e-07	ci right 2.866910e-06	k: 5	n:4070000
Cons ci ratio: 1.333474e-02	ci left: 2.065275e-02	ci right 2.093024e-02	k: 84620	n:4070000
KS ci ratio: 2.263212e+00	ci left: 5.951088e-08	ci right 1.775106e-06	k: 2	n:4070000
CCNF   4070000 perm   7452 sec   (546 perm/sec)   p_kst 4.914005e-07   p_cons 2.079115e-02   p_joint 1.228501e-06

Joint ci ratio: 1.600332e+00	ci left: 3.979134e-07	ci right 2.859883e-06	k: 5	n:4080000
Cons ci ratio: 1.331694e-02	ci left: 2.065734e-02	ci right 2.093452e-02	k: 84846	n:4080000
KS ci ratio: 2.263212e+00	ci left: 5.936502e-08	ci right 1.770756e-06	k: 2	n:4080000
CCNF   4080000 perm   7485 sec   (545 perm/sec)   p_kst 4.901961e-07   p_cons 2.079559e-02   p_joint 1.225490e-06

Joint ci ratio: 1.600332e+00	ci left: 3.969406e-07	ci right 2.852891e-06	k: 5	n:4090000
Cons ci ratio: 1.329833e-02	ci left: 2.066459e-02	ci right 2.094147e-02	k: 85083	n:4090000
KS ci ratio: 2.263212e+00	ci left: 5.921988e-08	ci right 1.766426e-06	k: 2	n:4090000
CCNF   4090000 perm   7518 sec   (544 perm/sec)   p_kst 4.889976e-07   p_cons 2.080269e-02   p_joint 1.222494e-06

Joint ci ratio: 1.600332e+00	ci left: 3.959724e-07	ci right 2.845932e-06	k: 5	n:4100000
Cons ci ratio: 1.328099e-02	ci left: 2.066815e-02	ci right 2.094472e-02	k: 85305	n:4100000
KS ci ratio: 2.263212e+00	ci left: 5.907544e-08	ci right 1.762118e-06	k: 2	n:4100000
CCNF   4100000 perm   7551 sec   (543 perm/sec)   p_kst 4.878049e-07   p_cons 2.080610e-02   p_joint 1.219512e-06

Joint ci ratio: 1.600332e+00	ci left: 3.950090e-07	ci right 2.839008e-06	k: 5	n:4110000
Cons ci ratio: 1.326467e-02	ci left: 2.066879e-02	ci right 2.094502e-02	k: 85515	n:4110000
KS ci ratio: 2.263212e+00	ci left: 5.893170e-08	ci right 1.757830e-06	k: 2	n:4110000
CCNF   4110000 perm   7585 sec   (542 perm/sec)   p_kst 4.866180e-07   p_cons 2.080657e-02   p_joint 1.216545e-06

Joint ci ratio: 1.600332e+00	ci left: 3.940502e-07	ci right 2.832117e-06	k: 5	n:4120000
Cons ci ratio: 1.324833e-02	ci left: 2.066967e-02	ci right 2.094557e-02	k: 85726	n:4120000
KS ci ratio: 2.263212e+00	ci left: 5.878867e-08	ci right 1.753564e-06	k: 2	n:4120000
CCNF   4120000 perm   7618 sec   (541 perm/sec)   p_kst 4.854369e-07   p_cons 2.080728e-02   p_joint 1.213592e-06

Joint ci ratio: 1.600332e+00	ci left: 3.930961e-07	ci right 2.825260e-06	k: 5	n:4130000
Cons ci ratio: 1.323103e-02	ci left: 2.067368e-02	ci right 2.094927e-02	k: 85950	n:4130000
KS ci ratio: 2.263212e+00	ci left: 5.864632e-08	ci right 1.749318e-06	k: 2	n:4130000
CCNF   4130000 perm   7651 sec   (540 perm/sec)   p_kst 4.842615e-07   p_cons 2.081114e-02   p_joint 1.210654e-06

Joint ci ratio: 1.600332e+00	ci left: 3.921466e-07	ci right 2.818435e-06	k: 5	n:4140000
Cons ci ratio: 1.321403e-02	ci left: 2.067695e-02	ci right 2.095223e-02	k: 86171	n:4140000
KS ci ratio: 2.263212e+00	ci left: 5.850466e-08	ci right 1.745093e-06	k: 2	n:4140000
CCNF   4140000 perm   7684 sec   (539 perm/sec)   p_kst 4.830918e-07   p_cons 2.081425e-02   p_joint 1.207729e-06

Joint ci ratio: 1.600332e+00	ci left: 3.912017e-07	ci right 2.811644e-06	k: 5	n:4150000
Cons ci ratio: 1.319827e-02	ci left: 2.067660e-02	ci right 2.095154e-02	k: 86377	n:4150000
KS ci ratio: 2.263212e+00	ci left: 5.836369e-08	ci right 1.740888e-06	k: 2	n:4150000
CCNF   4150000 perm   7717 sec   (538 perm/sec)   p_kst 4.819277e-07   p_cons 2.081373e-02   p_joint 1.204819e-06

Joint ci ratio: 1.600332e+00	ci left: 3.902613e-07	ci right 2.804885e-06	k: 5	n:4160000
Cons ci ratio: 1.318187e-02	ci left: 2.067841e-02	ci right 2.095303e-02	k: 86592	n:4160000
KS ci ratio: 2.263212e+00	ci left: 5.822339e-08	ci right 1.736703e-06	k: 2	n:4160000
CCNF   4160000 perm   7751 sec   (537 perm/sec)   p_kst 4.807692e-07   p_cons 2.081538e-02   p_joint 1.201923e-06

Joint ci ratio: 1.600332e+00	ci left: 3.893254e-07	ci right 2.798159e-06	k: 5	n:4170000
Cons ci ratio: 1.316746e-02	ci left: 2.067423e-02	ci right 2.094850e-02	k: 86782	n:4170000
KS ci ratio: 2.263212e+00	ci left: 5.808377e-08	ci right 1.732538e-06	k: 2	n:4170000
CCNF   4170000 perm   7784 sec   (536 perm/sec)   p_kst 4.796163e-07   p_cons 2.081103e-02   p_joint 1.199041e-06

Joint ci ratio: 1.600332e+00	ci left: 3.883940e-07	ci right 2.791465e-06	k: 5	n:4180000
Cons ci ratio: 1.315194e-02	ci left: 2.067365e-02	ci right 2.094759e-02	k: 86987	n:4180000
KS ci ratio: 2.263212e+00	ci left: 5.794481e-08	ci right 1.728393e-06	k: 2	n:4180000
CCNF   4180000 perm   7818 sec   (535 perm/sec)   p_kst 4.784689e-07   p_cons 2.081029e-02   p_joint 1.196172e-06

Joint ci ratio: 1.600332e+00	ci left: 3.874670e-07	ci right 2.784803e-06	k: 5	n:4190000
Cons ci ratio: 1.313440e-02	ci left: 2.067950e-02	ci right 2.095314e-02	k: 87219	n:4190000
KS ci ratio: 2.263212e+00	ci left: 5.780652e-08	ci right 1.724268e-06	k: 2	n:4190000
CCNF   4190000 perm   7852 sec   (534 perm/sec)   p_kst 4.773270e-07   p_cons 2.081599e-02   p_joint 1.193317e-06

Joint ci ratio: 1.600332e+00	ci left: 3.865445e-07	ci right 2.778172e-06	k: 5	n:4200000
Cons ci ratio: 1.312052e-02	ci left: 2.067417e-02	ci right 2.094745e-02	k: 87404	n:4200000
KS ci ratio: 2.263212e+00	ci left: 5.766888e-08	ci right 1.720163e-06	k: 2	n:4200000
CCNF   4200000 perm   7886 sec   (533 perm/sec)   p_kst 4.761905e-07   p_cons 2.081048e-02   p_joint 1.190476e-06

Joint ci ratio: 1.600332e+00	ci left: 3.856263e-07	ci right 2.771573e-06	k: 5	n:4210000
Cons ci ratio: 1.310769e-02	ci left: 2.066578e-02	ci right 2.093868e-02	k: 87576	n:4210000
KS ci ratio: 2.263212e+00	ci left: 5.753190e-08	ci right 1.716077e-06	k: 2	n:4210000
CCNF   4210000 perm   7920 sec   (532 perm/sec)   p_kst 4.750594e-07   p_cons 2.080190e-02   p_joint 1.187648e-06

Joint ci ratio: 1.600332e+00	ci left: 3.847125e-07	ci right 2.765005e-06	k: 5	n:4220000
Cons ci ratio: 1.309154e-02	ci left: 2.066783e-02	ci right 2.094041e-02	k: 87792	n:4220000
KS ci ratio: 2.263212e+00	ci left: 5.739557e-08	ci right 1.712010e-06	k: 2	n:4220000
CCNF   4220000 perm   7954 sec   (531 perm/sec)   p_kst 4.739336e-07   p_cons 2.080379e-02   p_joint 1.184834e-06

Joint ci ratio: 1.600332e+00	ci left: 3.838030e-07	ci right 2.758469e-06	k: 5	n:4230000
Cons ci ratio: 1.307530e-02	ci left: 2.067033e-02	ci right 2.094261e-02	k: 88010	n:4230000
KS ci ratio: 2.263212e+00	ci left: 5.725988e-08	ci right 1.707963e-06	k: 2	n:4230000
CCNF   4230000 perm   7988 sec   (530 perm/sec)   p_kst 4.728132e-07   p_cons 2.080615e-02   p_joint 1.182033e-06

Joint ci ratio: 1.600332e+00	ci left: 3.828978e-07	ci right 2.751963e-06	k: 5	n:4240000
Cons ci ratio: 1.306026e-02	ci left: 2.066930e-02	ci right 2.094126e-02	k: 88213	n:4240000
KS ci ratio: 2.263212e+00	ci left: 5.712483e-08	ci right 1.703935e-06	k: 2	n:4240000
CCNF   4240000 perm   8022 sec   (529 perm/sec)   p_kst 4.716981e-07   p_cons 2.080495e-02   p_joint 1.179245e-06

Joint ci ratio: 1.600332e+00	ci left: 3.819969e-07	ci right 2.745488e-06	k: 5	n:4250000
Cons ci ratio: 1.304579e-02	ci left: 2.066664e-02	ci right 2.093825e-02	k: 88409	n:4250000
KS ci ratio: 2.263212e+00	ci left: 5.699042e-08	ci right 1.699925e-06	k: 2	n:4250000
CCNF   4250000 perm   8057 sec   (528 perm/sec)   p_kst 4.705882e-07   p_cons 2.080212e-02   p_joint 1.176471e-06

Joint ci ratio: 1.600332e+00	ci left: 3.811002e-07	ci right 2.739043e-06	k: 5	n:4260000
Cons ci ratio: 1.303190e-02	ci left: 2.066235e-02	ci right 2.093361e-02	k: 88598	n:4260000
KS ci ratio: 2.263212e+00	ci left: 5.685664e-08	ci right 1.695935e-06	k: 2	n:4260000
CCNF   4260000 perm   8091 sec   (527 perm/sec)   p_kst 4.694836e-07   p_cons 2.079765e-02   p_joint 1.173709e-06

Joint ci ratio: 1.600332e+00	ci left: 3.802077e-07	ci right 2.732628e-06	k: 5	n:4270000
Cons ci ratio: 1.301611e-02	ci left: 2.066414e-02	ci right 2.093510e-02	k: 88813	n:4270000
KS ci ratio: 2.263212e+00	ci left: 5.672349e-08	ci right 1.691963e-06	k: 2	n:4270000
CCNF   4270000 perm   8125 sec   (526 perm/sec)   p_kst 4.683841e-07   p_cons 2.079930e-02   p_joint 1.170960e-06

Joint ci ratio: 1.600332e+00	ci left: 3.793194e-07	ci right 2.726244e-06	k: 5	n:4280000
Cons ci ratio: 1.300179e-02	ci left: 2.066151e-02	ci right 2.093213e-02	k: 89009	n:4280000
KS ci ratio: 2.263212e+00	ci left: 5.659096e-08	ci right 1.688010e-06	k: 2	n:4280000
CCNF   4280000 perm   8159 sec   (525 perm/sec)   p_kst 4.672897e-07   p_cons 2.079650e-02   p_joint 1.168224e-06

Joint ci ratio: 1.600332e+00	ci left: 3.784352e-07	ci right 2.719889e-06	k: 5	n:4290000
Cons ci ratio: 1.298580e-02	ci left: 2.066423e-02	ci right 2.093455e-02	k: 89228	n:4290000
KS ci ratio: 2.263212e+00	ci left: 5.645904e-08	ci right 1.684075e-06	k: 2	n:4290000
CCNF   4290000 perm   8194 sec   (524 perm/sec)   p_kst 4.662005e-07   p_cons 2.079907e-02   p_joint 1.165501e-06

Joint ci ratio: 1.600332e+00	ci left: 3.775551e-07	ci right 2.713563e-06	k: 5	n:4300000
Cons ci ratio: 1.297129e-02	ci left: 2.066253e-02	ci right 2.093253e-02	k: 89428	n:4300000
KS ci ratio: 2.263212e+00	ci left: 5.632774e-08	ci right 1.680159e-06	k: 2	n:4300000
CCNF   4300000 perm   8228 sec   (523 perm/sec)   p_kst 4.651163e-07   p_cons 2.079721e-02   p_joint 1.162791e-06

Joint ci ratio: 1.600332e+00	ci left: 3.766791e-07	ci right 2.707268e-06	k: 5	n:4310000
Cons ci ratio: 1.295527e-02	ci left: 2.066570e-02	ci right 2.093541e-02	k: 89649	n:4310000
KS ci ratio: 2.263212e+00	ci left: 5.619705e-08	ci right 1.676261e-06	k: 2	n:4310000
CCNF   4310000 perm   8262 sec   (522 perm/sec)   p_kst 4.640371e-07   p_cons 2.080023e-02   p_joint 1.160093e-06

Joint ci ratio: 1.600332e+00	ci left: 3.758071e-07	ci right 2.701001e-06	k: 5	n:4320000
Cons ci ratio: 1.294115e-02	ci left: 2.066309e-02	ci right 2.093246e-02	k: 89845	n:4320000
KS ci ratio: 2.263212e+00	ci left: 5.606697e-08	ci right 1.672380e-06	k: 2	n:4320000
CCNF   4320000 perm   8295 sec   (521 perm/sec)   p_kst 4.629630e-07   p_cons 2.079745e-02   p_joint 1.157407e-06

Joint ci ratio: 1.600332e+00	ci left: 3.749392e-07	ci right 2.694763e-06	k: 5	n:4330000
Cons ci ratio: 1.292532e-02	ci left: 2.066601e-02	ci right 2.093509e-02	k: 90065	n:4330000
KS ci ratio: 2.263212e+00	ci left: 5.593748e-08	ci right 1.668518e-06	k: 2	n:4330000
CCNF   4330000 perm   8330 sec   (520 perm/sec)   p_kst 4.618938e-07   p_cons 2.080023e-02   p_joint 1.154734e-06

Joint ci ratio: 1.600332e+00	ci left: 3.740753e-07	ci right 2.688554e-06	k: 5	n:4340000
Cons ci ratio: 1.290976e-02	ci left: 2.066823e-02	ci right 2.093701e-02	k: 90282	n:4340000
KS ci ratio: 2.263212e+00	ci left: 5.580859e-08	ci right 1.664674e-06	k: 2	n:4340000
CCNF   4340000 perm   8366 sec   (519 perm/sec)   p_kst 4.608295e-07   p_cons 2.080230e-02   p_joint 1.152074e-06

Joint ci ratio: 1.600332e+00	ci left: 3.732154e-07	ci right 2.682373e-06	k: 5	n:4350000
Cons ci ratio: 1.289637e-02	ci left: 2.066380e-02	ci right 2.093224e-02	k: 90470	n:4350000
KS ci ratio: 2.263212e+00	ci left: 5.568030e-08	ci right 1.660847e-06	k: 2	n:4350000
CCNF   4350000 perm   8400 sec   (518 perm/sec)   p_kst 4.597701e-07   p_cons 2.079770e-02   p_joint 1.149425e-06

Joint ci ratio: 1.600332e+00	ci left: 3.723594e-07	ci right 2.676221e-06	k: 5	n:4360000
Cons ci ratio: 1.288309e-02	ci left: 2.065916e-02	ci right 2.092726e-02	k: 90657	n:4360000
KS ci ratio: 2.263212e+00	ci left: 5.555259e-08	ci right 1.657037e-06	k: 2	n:4360000
CCNF   4360000 perm   8434 sec   (517 perm/sec)   p_kst 4.587156e-07   p_cons 2.079289e-02   p_joint 1.146789e-06

Joint ci ratio: 1.600332e+00	ci left: 3.715073e-07	ci right 2.670097e-06	k: 5	n:4370000
Cons ci ratio: 1.286935e-02	ci left: 2.065613e-02	ci right 2.092391e-02	k: 90851	n:4370000
KS ci ratio: 2.263212e+00	ci left: 5.542547e-08	ci right 1.653246e-06	k: 2	n:4370000
CCNF   4370000 perm   8470 sec   (516 perm/sec)   p_kst 4.576659e-07   p_cons 2.078970e-02   p_joint 1.144165e-06

Joint ci ratio: 1.481619e+00	ci left: 5.027157e-07	ci right 2.981613e-06	k: 6	n:4380000
Cons ci ratio: 1.285342e-02	ci left: 2.066018e-02	ci right 2.092767e-02	k: 91076	n:4380000
KS ci ratio: 2.263212e+00	ci left: 5.529893e-08	ci right 1.649471e-06	k: 2	n:4380000
CCNF   4380000 perm   8505 sec   (515 perm/sec)   p_kst 4.566210e-07   p_cons 2.079361e-02   p_joint 1.369863e-06

Joint ci ratio: 1.481619e+00	ci left: 5.015706e-07	ci right 2.974821e-06	k: 6	n:4390000
Cons ci ratio: 1.283949e-02	ci left: 2.065807e-02	ci right 2.092525e-02	k: 91274	n:4390000
KS ci ratio: 2.263212e+00	ci left: 5.517296e-08	ci right 1.645714e-06	k: 2	n:4390000
CCNF   4390000 perm   8541 sec   (514 perm/sec)   p_kst 4.555809e-07   p_cons 2.079134e-02   p_joint 1.366743e-06

Joint ci ratio: 1.481619e+00	ci left: 5.004307e-07	ci right 2.968060e-06	k: 6	n:4400000
Cons ci ratio: 1.282402e-02	ci left: 2.066096e-02	ci right 2.092785e-02	k: 91494	n:4400000
KS ci ratio: 2.263212e+00	ci left: 5.504757e-08	ci right 1.641973e-06	k: 2	n:4400000
CCNF   4400000 perm   8576 sec   (513 perm/sec)   p_kst 4.545455e-07   p_cons 2.079409e-02   p_joint 1.363636e-06

Joint ci ratio: 1.481619e+00	ci left: 4.992959e-07	ci right 2.961330e-06	k: 6	n:4410000
Cons ci ratio: 1.280919e-02	ci left: 2.066203e-02	ci right 2.092862e-02	k: 91706	n:4410000
KS ci ratio: 2.263212e+00	ci left: 5.492274e-08	ci right 1.638250e-06	k: 2	n:4410000
CCNF   4410000 perm   8611 sec   (512 perm/sec)   p_kst 4.535147e-07   p_cons 2.079501e-02   p_joint 1.360544e-06

Joint ci ratio: 1.481619e+00	ci left: 4.981663e-07	ci right 2.954630e-06	k: 6	n:4420000
Cons ci ratio: 1.279511e-02	ci left: 2.066084e-02	ci right 2.092712e-02	k: 91908	n:4420000
KS ci ratio: 2.263212e+00	ci left: 5.479848e-08	ci right 1.634544e-06	k: 2	n:4420000
CCNF   4420000 perm   8646 sec   (511 perm/sec)   p_kst 4.524887e-07   p_cons 2.079367e-02   p_joint 1.357466e-06

Joint ci ratio: 1.481619e+00	ci left: 4.970417e-07	ci right 2.947960e-06	k: 6	n:4430000
Cons ci ratio: 1.278215e-02	ci left: 2.065628e-02	ci right 2.092223e-02	k: 92095	n:4430000
KS ci ratio: 2.263212e+00	ci left: 5.467479e-08	ci right 1.630854e-06	k: 2	n:4430000
CCNF   4430000 perm   8682 sec   (510 perm/sec)   p_kst 4.514673e-07   p_cons 2.078894e-02   p_joint 1.354402e-06

Joint ci ratio: 1.481619e+00	ci left: 4.959223e-07	ci right 2.941321e-06	k: 6	n:4440000
Cons ci ratio: 1.276823e-02	ci left: 2.065488e-02	ci right 2.092052e-02	k: 92296	n:4440000
KS ci ratio: 2.263212e+00	ci left: 5.455164e-08	ci right 1.627181e-06	k: 2	n:4440000
CCNF   4440000 perm   8717 sec   (509 perm/sec)   p_kst 4.504505e-07   p_cons 2.078739e-02   p_joint 1.351351e-06

Joint ci ratio: 1.481619e+00	ci left: 4.948079e-07	ci right 2.934711e-06	k: 6	n:4450000
Cons ci ratio: 1.275422e-02	ci left: 2.065394e-02	ci right 2.091927e-02	k: 92499	n:4450000
KS ci ratio: 2.263212e+00	ci left: 5.442906e-08	ci right 1.623524e-06	k: 2	n:4450000
CCNF   4450000 perm   8753 sec   (508 perm/sec)   p_kst 4.494382e-07   p_cons 2.078629e-02   p_joint 1.348315e-06

Joint ci ratio: 1.959999e+00	ci left: 1.387157e-07	ci right 1.965755e-06	k: 3	n:4460000
Cons ci ratio: 1.273990e-02	ci left: 2.065412e-02	ci right 2.091915e-02	k: 92707	n:4460000
KS ci ratio: 2.263212e+00	ci left: 5.430702e-08	ci right 1.619884e-06	k: 2	n:4460000
CCNF   4460000 perm   8789 sec   (507 perm/sec)   p_kst 4.484305e-07   p_cons 2.078632e-02   p_joint 6.726457e-07

Joint ci ratio: 1.959999e+00	ci left: 1.384054e-07	ci right 1.961357e-06	k: 3	n:4470000
Cons ci ratio: 1.272556e-02	ci left: 2.065452e-02	ci right 2.091926e-02	k: 92916	n:4470000
KS ci ratio: 2.263212e+00	ci left: 5.418553e-08	ci right 1.616260e-06	k: 2	n:4470000
CCNF   4470000 perm   8825 sec   (507 perm/sec)   p_kst 4.474273e-07   p_cons 2.078658e-02   p_joint 6.711409e-07

Joint ci ratio: 1.959999e+00	ci left: 1.380965e-07	ci right 1.956979e-06	k: 3	n:4480000
Cons ci ratio: 1.271100e-02	ci left: 2.065581e-02	ci right 2.092026e-02	k: 93129	n:4480000
KS ci ratio: 2.263212e+00	ci left: 5.406458e-08	ci right 1.612653e-06	k: 2	n:4480000
CCNF   4480000 perm   8862 sec   (506 perm/sec)   p_kst 4.464286e-07   p_cons 2.078772e-02   p_joint 6.696429e-07

Joint ci ratio: 1.959999e+00	ci left: 1.377889e-07	ci right 1.952621e-06	k: 3	n:4490000
Cons ci ratio: 1.269766e-02	ci left: 2.065332e-02	ci right 2.091746e-02	k: 93325	n:4490000
KS ci ratio: 2.263212e+00	ci left: 5.394416e-08	ci right 1.609061e-06	k: 2	n:4490000
CCNF   4490000 perm   8898 sec   (505 perm/sec)   p_kst 4.454343e-07   p_cons 2.078508e-02   p_joint 6.681514e-07

Joint ci ratio: 1.959999e+00	ci left: 1.374827e-07	ci right 1.948282e-06	k: 3	n:4500000
Cons ci ratio: 1.268298e-02	ci left: 2.065527e-02	ci right 2.091913e-02	k: 93541	n:4500000
KS ci ratio: 2.263212e+00	ci left: 5.382429e-08	ci right 1.605485e-06	k: 2	n:4500000
CCNF   4500000 perm   8934 sec   (504 perm/sec)   p_kst 4.444444e-07   p_cons 2.078689e-02   p_joint 6.666667e-07

Joint ci ratio: 1.753076e+00	ci left: 2.416553e-07	ci right 2.270861e-06	k: 4	n:4510000
Cons ci ratio: 1.266876e-02	ci left: 2.065588e-02	ci right 2.091945e-02	k: 93751	n:4510000
KS ci ratio: 1.959999e+00	ci left: 1.371779e-07	ci right 1.943962e-06	k: 3	n:4510000
CCNF   4510000 perm   8970 sec   (503 perm/sec)   p_kst 6.651885e-07   p_cons 2.078736e-02   p_joint 8.869180e-07

Joint ci ratio: 1.753076e+00	ci left: 2.411207e-07	ci right 2.265837e-06	k: 4	n:4520000
Cons ci ratio: 1.265398e-02	ci left: 2.065848e-02	ci right 2.092178e-02	k: 93970	n:4520000
KS ci ratio: 1.959999e+00	ci left: 1.368744e-07	ci right 1.939661e-06	k: 3	n:4520000
CCNF   4520000 perm   9006 sec   (502 perm/sec)   p_kst 6.637168e-07   p_cons 2.078982e-02   p_joint 8.849558e-07

Joint ci ratio: 1.753076e+00	ci left: 2.405884e-07	ci right 2.260835e-06	k: 4	n:4530000
Cons ci ratio: 1.263801e-02	ci left: 2.066503e-02	ci right 2.092807e-02	k: 94207	n:4530000
KS ci ratio: 1.959999e+00	ci left: 1.365722e-07	ci right 1.935379e-06	k: 3	n:4530000
CCNF   4530000 perm   9043 sec   (501 perm/sec)   p_kst 6.622517e-07   p_cons 2.079625e-02   p_joint 8.830022e-07

Joint ci ratio: 1.753076e+00	ci left: 2.400585e-07	ci right 2.255855e-06	k: 4	n:4540000
Cons ci ratio: 1.262415e-02	ci left: 2.066497e-02	ci right 2.092772e-02	k: 94414	n:4540000
KS ci ratio: 1.959999e+00	ci left: 1.362714e-07	ci right 1.931116e-06	k: 3	n:4540000
CCNF   4540000 perm   9079 sec   (500 perm/sec)   p_kst 6.607930e-07   p_cons 2.079604e-02   p_joint 8.810573e-07

Joint ci ratio: 1.753076e+00	ci left: 2.395309e-07	ci right 2.250897e-06	k: 4	n:4550000
Cons ci ratio: 1.260945e-02	ci left: 2.066775e-02	ci right 2.093022e-02	k: 94634	n:4550000
KS ci ratio: 1.959999e+00	ci left: 1.359719e-07	ci right 1.926872e-06	k: 3	n:4550000
CCNF   4550000 perm   9115 sec   (499 perm/sec)   p_kst 6.593407e-07   p_cons 2.079868e-02   p_joint 8.791209e-07

Joint ci ratio: 1.753076e+00	ci left: 2.390056e-07	ci right 2.245961e-06	k: 4	n:4560000
Cons ci ratio: 1.259317e-02	ci left: 2.067576e-02	ci right 2.093800e-02	k: 94878	n:4560000
KS ci ratio: 1.959999e+00	ci left: 1.356737e-07	ci right 1.922646e-06	k: 3	n:4560000
CCNF   4560000 perm   9152 sec   (498 perm/sec)   p_kst 6.578947e-07   p_cons 2.080658e-02   p_joint 8.771930e-07

Joint ci ratio: 1.753076e+00	ci left: 2.384826e-07	ci right 2.241046e-06	k: 4	n:4570000
Cons ci ratio: 1.257710e-02	ci left: 2.068331e-02	ci right 2.094531e-02	k: 95120	n:4570000
KS ci ratio: 1.959999e+00	ci left: 1.353769e-07	ci right 1.918439e-06	k: 3	n:4570000
CCNF   4570000 perm   9189 sec   (497 perm/sec)   p_kst 6.564551e-07   p_cons 2.081400e-02   p_joint 8.752735e-07

Joint ci ratio: 1.753076e+00	ci left: 2.379619e-07	ci right 2.236153e-06	k: 4	n:4580000
Cons ci ratio: 1.256283e-02	ci left: 2.068516e-02	ci right 2.094688e-02	k: 95336	n:4580000
KS ci ratio: 1.959999e+00	ci left: 1.350813e-07	ci right 1.914251e-06	k: 3	n:4580000
CCNF   4580000 perm   9225 sec   (496 perm/sec)   p_kst 6.550218e-07   p_cons 2.081572e-02   p_joint 8.733624e-07

Joint ci ratio: 1.753076e+00	ci left: 2.374435e-07	ci right 2.231281e-06	k: 4	n:4590000
Cons ci ratio: 1.255015e-02	ci left: 2.068201e-02	ci right 2.094343e-02	k: 95529	n:4590000
KS ci ratio: 1.959999e+00	ci left: 1.347870e-07	ci right 1.910080e-06	k: 3	n:4590000
CCNF   4590000 perm   9263 sec   (496 perm/sec)   p_kst 6.535948e-07   p_cons 2.081242e-02   p_joint 8.714597e-07

Joint ci ratio: 1.753076e+00	ci left: 2.369273e-07	ci right 2.226431e-06	k: 4	n:4600000
Cons ci ratio: 1.253705e-02	ci left: 2.068039e-02	ci right 2.094151e-02	k: 95729	n:4600000
KS ci ratio: 1.959999e+00	ci left: 1.344940e-07	ci right 1.905928e-06	k: 3	n:4600000
CCNF   4600000 perm   9300 sec   (495 perm/sec)   p_kst 6.521739e-07   p_cons 2.081065e-02   p_joint 8.695652e-07

Joint ci ratio: 1.753076e+00	ci left: 2.364134e-07	ci right 2.221601e-06	k: 4	n:4610000
Cons ci ratio: 1.252245e-02	ci left: 2.068376e-02	ci right 2.094461e-02	k: 95952	n:4610000
KS ci ratio: 1.959999e+00	ci left: 1.342022e-07	ci right 1.901793e-06	k: 3	n:4610000
CCNF   4610000 perm   9337 sec   (494 perm/sec)   p_kst 6.507592e-07   p_cons 2.081388e-02   p_joint 8.676790e-07

Joint ci ratio: 1.753076e+00	ci left: 2.359016e-07	ci right 2.216793e-06	k: 4	n:4620000
Cons ci ratio: 1.251089e-02	ci left: 2.067739e-02	ci right 2.093793e-02	k: 96130	n:4620000
KS ci ratio: 1.959999e+00	ci left: 1.339117e-07	ci right 1.897677e-06	k: 3	n:4620000
CCNF   4620000 perm   9375 sec   (493 perm/sec)   p_kst 6.493506e-07   p_cons 2.080736e-02   p_joint 8.658009e-07

Joint ci ratio: 1.753076e+00	ci left: 2.353921e-07	ci right 2.212005e-06	k: 4	n:4630000
Cons ci ratio: 1.249784e-02	ci left: 2.067601e-02	ci right 2.093625e-02	k: 96331	n:4630000
KS ci ratio: 1.959999e+00	ci left: 1.336225e-07	ci right 1.893578e-06	k: 3	n:4630000
CCNF   4630000 perm   9412 sec   (492 perm/sec)   p_kst 6.479482e-07   p_cons 2.080583e-02   p_joint 8.639309e-07

Joint ci ratio: 1.753076e+00	ci left: 2.348848e-07	ci right 2.207237e-06	k: 4	n:4640000
Cons ci ratio: 1.248378e-02	ci left: 2.067807e-02	ci right 2.093804e-02	k: 96548	n:4640000
KS ci ratio: 1.959999e+00	ci left: 1.333345e-07	ci right 1.889497e-06	k: 3	n:4640000
CCNF   4640000 perm   9449 sec   (491 perm/sec)   p_kst 6.465517e-07   p_cons 2.080776e-02   p_joint 8.620690e-07

Joint ci ratio: 1.753076e+00	ci left: 2.343797e-07	ci right 2.202491e-06	k: 4	n:4650000
Cons ci ratio: 1.246976e-02	ci left: 2.068012e-02	ci right 2.093983e-02	k: 96765	n:4650000
KS ci ratio: 1.959999e+00	ci left: 1.330478e-07	ci right 1.885434e-06	k: 3	n:4650000
CCNF   4650000 perm   9487 sec   (490 perm/sec)   p_kst 6.451613e-07   p_cons 2.080968e-02   p_joint 8.602151e-07

Joint ci ratio: 1.753076e+00	ci left: 2.338767e-07	ci right 2.197764e-06	k: 4	n:4660000
Cons ci ratio: 1.245743e-02	ci left: 2.067682e-02	ci right 2.093622e-02	k: 96957	n:4660000
KS ci ratio: 1.959999e+00	ci left: 1.327623e-07	ci right 1.881388e-06	k: 3	n:4660000
CCNF   4660000 perm   9524 sec   (489 perm/sec)   p_kst 6.437768e-07   p_cons 2.080622e-02   p_joint 8.583691e-07

Joint ci ratio: 1.753076e+00	ci left: 2.333759e-07	ci right 2.193058e-06	k: 4	n:4670000
Cons ci ratio: 1.244494e-02	ci left: 2.067417e-02	ci right 2.093328e-02	k: 97152	n:4670000
KS ci ratio: 1.959999e+00	ci left: 1.324780e-07	ci right 1.877359e-06	k: 3	n:4670000
CCNF   4670000 perm   9561 sec   (488 perm/sec)   p_kst 6.423983e-07   p_cons 2.080343e-02   p_joint 8.565310e-07

Joint ci ratio: 1.753076e+00	ci left: 2.328773e-07	ci right 2.188372e-06	k: 4	n:4680000
Cons ci ratio: 1.243170e-02	ci left: 2.067409e-02	ci right 2.093292e-02	k: 97359	n:4680000
KS ci ratio: 1.959999e+00	ci left: 1.321949e-07	ci right 1.873348e-06	k: 3	n:4680000
CCNF   4680000 perm   9597 sec   (488 perm/sec)   p_kst 6.410256e-07   p_cons 2.080321e-02   p_joint 8.547009e-07

Joint ci ratio: 1.753076e+00	ci left: 2.323807e-07	ci right 2.183706e-06	k: 4	n:4690000
Cons ci ratio: 1.241936e-02	ci left: 2.067124e-02	ci right 2.092978e-02	k: 97553	n:4690000
KS ci ratio: 1.959999e+00	ci left: 1.319131e-07	ci right 1.869353e-06	k: 3	n:4690000
CCNF   4690000 perm   9634 sec   (487 perm/sec)   p_kst 6.396588e-07   p_cons 2.080021e-02   p_joint 8.528785e-07

Joint ci ratio: 1.753076e+00	ci left: 2.318863e-07	ci right 2.179060e-06	k: 4	n:4700000
Cons ci ratio: 1.240717e-02	ci left: 2.066798e-02	ci right 2.092622e-02	k: 97745	n:4700000
KS ci ratio: 1.959999e+00	ci left: 1.316324e-07	ci right 1.865376e-06	k: 3	n:4700000
CCNF   4700000 perm   9670 sec   (486 perm/sec)   p_kst 6.382979e-07   p_cons 2.079681e-02   p_joint 8.510638e-07

Joint ci ratio: 1.753076e+00	ci left: 2.313940e-07	ci right 2.174434e-06	k: 4	n:4710000
Cons ci ratio: 1.239464e-02	ci left: 2.066601e-02	ci right 2.092396e-02	k: 97943	n:4710000
KS ci ratio: 1.959999e+00	ci left: 1.313529e-07	ci right 1.861416e-06	k: 3	n:4710000
CCNF   4710000 perm   9708 sec   (485 perm/sec)   p_kst 6.369427e-07   p_cons 2.079469e-02   p_joint 8.492569e-07

Joint ci ratio: 1.753076e+00	ci left: 2.309037e-07	ci right 2.169827e-06	k: 4	n:4720000
Cons ci ratio: 1.238182e-02	ci left: 2.066510e-02	ci right 2.092277e-02	k: 98146	n:4720000
KS ci ratio: 1.959999e+00	ci left: 1.310746e-07	ci right 1.857472e-06	k: 3	n:4720000
CCNF   4720000 perm   9745 sec   (484 perm/sec)   p_kst 6.355932e-07   p_cons 2.079364e-02   p_joint 8.474576e-07

Joint ci ratio: 1.753076e+00	ci left: 2.304156e-07	ci right 2.165239e-06	k: 4	n:4730000
Cons ci ratio: 1.236898e-02	ci left: 2.066441e-02	ci right 2.092180e-02	k: 98350	n:4730000
KS ci ratio: 1.959999e+00	ci left: 1.307975e-07	ci right 1.853545e-06	k: 3	n:4730000
CCNF   4730000 perm   9782 sec   (484 perm/sec)   p_kst 6.342495e-07   p_cons 2.079281e-02   p_joint 8.456660e-07

Joint ci ratio: 1.753076e+00	ci left: 2.299295e-07	ci right 2.160671e-06	k: 4	n:4740000
Cons ci ratio: 1.235451e-02	ci left: 2.066919e-02	ci right 2.092634e-02	k: 98580	n:4740000
KS ci ratio: 1.959999e+00	ci left: 1.305216e-07	ci right 1.849635e-06	k: 3	n:4740000
CCNF   4740000 perm   9819 sec   (483 perm/sec)   p_kst 6.329114e-07   p_cons 2.079747e-02   p_joint 8.438819e-07

Joint ci ratio: 1.753076e+00	ci left: 2.294454e-07	ci right 2.156123e-06	k: 4	n:4750000
Cons ci ratio: 1.234029e-02	ci left: 2.067331e-02	ci right 2.093022e-02	k: 98807	n:4750000
KS ci ratio: 1.959999e+00	ci left: 1.302468e-07	ci right 1.845741e-06	k: 3	n:4750000
CCNF   4750000 perm   9857 sec   (482 perm/sec)   p_kst 6.315789e-07   p_cons 2.080147e-02   p_joint 8.421053e-07

Joint ci ratio: 1.753076e+00	ci left: 2.289634e-07	ci right 2.151593e-06	k: 4	n:4760000
Cons ci ratio: 1.232630e-02	ci left: 2.067680e-02	ci right 2.093345e-02	k: 99031	n:4760000
KS ci ratio: 1.959999e+00	ci left: 1.299732e-07	ci right 1.841863e-06	k: 3	n:4760000
CCNF   4760000 perm   9894 sec   (481 perm/sec)   p_kst 6.302521e-07   p_cons 2.080483e-02   p_joint 8.403361e-07

Joint ci ratio: 1.753076e+00	ci left: 2.284834e-07	ci right 2.147082e-06	k: 4	n:4770000
Cons ci ratio: 1.231205e-02	ci left: 2.068131e-02	ci right 2.093772e-02	k: 99260	n:4770000
KS ci ratio: 1.959999e+00	ci left: 1.297007e-07	ci right 1.838002e-06	k: 3	n:4770000
CCNF   4770000 perm   9932 sec   (480 perm/sec)   p_kst 6.289308e-07   p_cons 2.080922e-02   p_joint 8.385744e-07

Joint ci ratio: 1.753076e+00	ci left: 2.280054e-07	ci right 2.142590e-06	k: 4	n:4780000
Cons ci ratio: 1.229828e-02	ci left: 2.068434e-02	ci right 2.094050e-02	k: 99482	n:4780000
KS ci ratio: 1.959999e+00	ci left: 1.294293e-07	ci right 1.834156e-06	k: 3	n:4780000
CCNF   4780000 perm   9970 sec   (479 perm/sec)   p_kst 6.276151e-07   p_cons 2.081213e-02   p_joint 8.368201e-07

Joint ci ratio: 1.753076e+00	ci left: 2.275294e-07	ci right 2.138117e-06	k: 4	n:4790000
Cons ci ratio: 1.228639e-02	ci left: 2.068133e-02	ci right 2.093720e-02	k: 99675	n:4790000
KS ci ratio: 1.959999e+00	ci left: 1.291591e-07	ci right 1.830327e-06	k: 3	n:4790000
CCNF   4790000 perm   10009 sec   (479 perm/sec)   p_kst 6.263048e-07   p_cons 2.080898e-02   p_joint 8.350731e-07

Joint ci ratio: 1.753076e+00	ci left: 2.270553e-07	ci right 2.133663e-06	k: 4	n:4800000
Cons ci ratio: 1.227253e-02	ci left: 2.068498e-02	ci right 2.094060e-02	k: 99900	n:4800000
KS ci ratio: 1.959999e+00	ci left: 1.288900e-07	ci right 1.826514e-06	k: 3	n:4800000
CCNF   4800000 perm   10046 sec   (478 perm/sec)   p_kst 6.250000e-07   p_cons 2.081250e-02   p_joint 8.333333e-07

Joint ci ratio: 1.753076e+00	ci left: 2.265833e-07	ci right 2.129227e-06	k: 4	n:4810000
Cons ci ratio: 1.225983e-02	ci left: 2.068487e-02	ci right 2.094023e-02	k: 100107	n:4810000
KS ci ratio: 1.959999e+00	ci left: 1.286221e-07	ci right 1.822717e-06	k: 3	n:4810000
CCNF   4810000 perm   10083 sec   (477 perm/sec)   p_kst 6.237006e-07   p_cons 2.081227e-02   p_joint 8.316008e-07

Joint ci ratio: 1.753076e+00	ci left: 2.261132e-07	ci right 2.124810e-06	k: 4	n:4820000
Cons ci ratio: 1.161159e-02	ci left: 2.296483e-02	ci right 2.323325e-02	k: 111336	n:4820000
KS ci ratio: 1.959999e+00	ci left: 1.283552e-07	ci right 1.818935e-06	k: 3	n:4820000
CCNF   4820000 perm   10121 sec   (476 perm/sec)   p_kst 6.224066e-07   p_cons 2.309876e-02   p_joint 8.298755e-07

Joint ci ratio: 1.753076e+00	ci left: 2.256450e-07	ci right 2.120410e-06	k: 4	n:4830000
Cons ci ratio: 1.159972e-02	ci left: 2.296435e-02	ci right 2.323249e-02	k: 111564	n:4830000
KS ci ratio: 1.959999e+00	ci left: 1.280895e-07	ci right 1.815169e-06	k: 3	n:4830000
CCNF   4830000 perm   10159 sec   (475 perm/sec)   p_kst 6.211180e-07   p_cons 2.309814e-02   p_joint 8.281573e-07

Joint ci ratio: 1.753076e+00	ci left: 2.251788e-07	ci right 2.116029e-06	k: 4	n:4840000
Cons ci ratio: 1.158783e-02	ci left: 2.296408e-02	ci right 2.323194e-02	k: 111793	n:4840000
KS ci ratio: 1.959999e+00	ci left: 1.278248e-07	ci right 1.811419e-06	k: 3	n:4840000
CCNF   4840000 perm   10196 sec   (475 perm/sec)   p_kst 6.198347e-07   p_cons 2.309773e-02   p_joint 8.264463e-07

Joint ci ratio: 1.753076e+00	ci left: 2.247146e-07	ci right 2.111666e-06	k: 4	n:4850000
Cons ci ratio: 1.157673e-02	ci left: 2.296094e-02	ci right 2.322850e-02	k: 112008	n:4850000
KS ci ratio: 1.959999e+00	ci left: 1.275613e-07	ci right 1.807684e-06	k: 3	n:4850000
CCNF   4850000 perm   10234 sec   (474 perm/sec)   p_kst 6.185567e-07   p_cons 2.309443e-02   p_joint 8.247423e-07

Joint ci ratio: 1.753076e+00	ci left: 2.242522e-07	ci right 2.107321e-06	k: 4	n:4860000
Cons ci ratio: 1.156360e-02	ci left: 2.296581e-02	ci right 2.323312e-02	k: 112262	n:4860000
KS ci ratio: 1.959999e+00	ci left: 1.272988e-07	ci right 1.803965e-06	k: 3	n:4860000
CCNF   4860000 perm   10272 sec   (473 perm/sec)   p_kst 6.172840e-07   p_cons 2.309918e-02   p_joint 8.230453e-07

Joint ci ratio: 1.753076e+00	ci left: 2.237917e-07	ci right 2.102994e-06	k: 4	n:4870000
Cons ci ratio: 1.155088e-02	ci left: 2.296922e-02	ci right 2.323628e-02	k: 112509	n:4870000
KS ci ratio: 1.959999e+00	ci left: 1.270374e-07	ci right 1.800260e-06	k: 3	n:4870000
CCNF   4870000 perm   10310 sec   (472 perm/sec)   p_kst 6.160164e-07   p_cons 2.310246e-02   p_joint 8.213552e-07

Joint ci ratio: 1.753076e+00	ci left: 2.233331e-07	ci right 2.098685e-06	k: 4	n:4880000
Cons ci ratio: 1.153909e-02	ci left: 2.296915e-02	ci right 2.323593e-02	k: 112739	n:4880000
KS ci ratio: 1.959999e+00	ci left: 1.267771e-07	ci right 1.796571e-06	k: 3	n:4880000
CCNF   4880000 perm   10349 sec   (472 perm/sec)   p_kst 6.147541e-07   p_cons 2.310225e-02   p_joint 8.196721e-07

Joint ci ratio: 1.753076e+00	ci left: 2.228764e-07	ci right 2.094393e-06	k: 4	n:4890000
Cons ci ratio: 1.152990e-02	ci left: 2.295908e-02	ci right 2.322553e-02	k: 112920	n:4890000
KS ci ratio: 1.959999e+00	ci left: 1.265178e-07	ci right 1.792897e-06	k: 3	n:4890000
CCNF   4890000 perm   10388 sec   (471 perm/sec)   p_kst 6.134969e-07   p_cons 2.309202e-02   p_joint 8.179959e-07

Joint ci ratio: 1.753076e+00	ci left: 2.224215e-07	ci right 2.090119e-06	k: 4	n:4900000
Cons ci ratio: 1.151666e-02	ci left: 2.296493e-02	ci right 2.323114e-02	k: 113179	n:4900000
KS ci ratio: 1.959999e+00	ci left: 1.262596e-07	ci right 1.789238e-06	k: 3	n:4900000
CCNF   4900000 perm   10427 sec   (470 perm/sec)   p_kst 6.122449e-07   p_cons 2.309776e-02   p_joint 8.163265e-07

Joint ci ratio: 1.753076e+00	ci left: 2.219686e-07	ci right 2.085862e-06	k: 4	n:4910000
Cons ci ratio: 1.150436e-02	ci left: 2.296731e-02	ci right 2.323326e-02	k: 113421	n:4910000
KS ci ratio: 1.959999e+00	ci left: 1.260025e-07	ci right 1.785594e-06	k: 3	n:4910000
CCNF   4910000 perm   10465 sec   (469 perm/sec)   p_kst 6.109980e-07   p_cons 2.310000e-02   p_joint 8.146640e-07

Joint ci ratio: 1.753076e+00	ci left: 2.215174e-07	ci right 2.081622e-06	k: 4	n:4920000
Cons ci ratio: 1.149251e-02	ci left: 2.296805e-02	ci right 2.323373e-02	k: 113655	n:4920000
KS ci ratio: 1.959999e+00	ci left: 1.257464e-07	ci right 1.781965e-06	k: 3	n:4920000
CCNF   4920000 perm   10504 sec   (468 perm/sec)   p_kst 6.097561e-07   p_cons 2.310061e-02   p_joint 8.130081e-07

Joint ci ratio: 1.753076e+00	ci left: 2.210681e-07	ci right 2.077400e-06	k: 4	n:4930000
Cons ci ratio: 1.148017e-02	ci left: 2.297081e-02	ci right 2.323624e-02	k: 113899	n:4930000
KS ci ratio: 1.959999e+00	ci left: 1.254913e-07	ci right 1.778350e-06	k: 3	n:4930000
CCNF   4930000 perm   10542 sec   (468 perm/sec)   p_kst 6.085193e-07   p_cons 2.310325e-02   p_joint 8.113590e-07

Joint ci ratio: 1.753076e+00	ci left: 2.206206e-07	ci right 2.073195e-06	k: 4	n:4940000
Cons ci ratio: 1.146850e-02	ci left: 2.297114e-02	ci right 2.323630e-02	k: 114131	n:4940000
KS ci ratio: 1.959999e+00	ci left: 1.252373e-07	ci right 1.774751e-06	k: 3	n:4940000
CCNF   4940000 perm   10582 sec   (467 perm/sec)   p_kst 6.072874e-07   p_cons 2.310344e-02   p_joint 8.097166e-07

Joint ci ratio: 1.753076e+00	ci left: 2.201749e-07	ci right 2.069007e-06	k: 4	n:4950000
Cons ci ratio: 1.145655e-02	ci left: 2.297268e-02	ci right 2.323758e-02	k: 114369	n:4950000
KS ci ratio: 1.959999e+00	ci left: 1.249843e-07	ci right 1.771165e-06	k: 3	n:4950000
CCNF   4950000 perm   10621 sec   (466 perm/sec)   p_kst 6.060606e-07   p_cons 2.310485e-02   p_joint 8.080808e-07

Joint ci ratio: 1.753076e+00	ci left: 2.197310e-07	ci right 2.064835e-06	k: 4	n:4960000
Cons ci ratio: 1.144459e-02	ci left: 2.297441e-02	ci right 2.323905e-02	k: 114608	n:4960000
KS ci ratio: 1.959999e+00	ci left: 1.247323e-07	ci right 1.767594e-06	k: 3	n:4960000
CCNF   4960000 perm   10660 sec   (465 perm/sec)   p_kst 6.048387e-07   p_cons 2.310645e-02   p_joint 8.064516e-07

Joint ci ratio: 1.959999e+00	ci left: 1.244813e-07	ci right 1.764038e-06	k: 3	n:4970000
Cons ci ratio: 1.143460e-02	ci left: 2.296851e-02	ci right 2.323285e-02	k: 114809	n:4970000
KS ci ratio: 1.959999e+00	ci left: 1.244813e-07	ci right 1.764038e-06	k: 3	n:4970000
CCNF   4970000 perm   10702 sec   (464 perm/sec)   p_kst 6.036217e-07   p_cons 2.310040e-02   p_joint 6.036217e-07

Joint ci ratio: 1.959999e+00	ci left: 1.242314e-07	ci right 1.760496e-06	k: 3	n:4980000
Cons ci ratio: 1.142322e-02	ci left: 2.296824e-02	ci right 2.323231e-02	k: 115038	n:4980000
KS ci ratio: 1.959999e+00	ci left: 1.242314e-07	ci right 1.760496e-06	k: 3	n:4980000
CCNF   4980000 perm   10742 sec   (464 perm/sec)   p_kst 6.024096e-07   p_cons 2.310000e-02   p_joint 6.024096e-07

Joint ci ratio: 1.959999e+00	ci left: 1.239824e-07	ci right 1.756968e-06	k: 3	n:4990000
Cons ci ratio: 1.141187e-02	ci left: 2.296797e-02	ci right 2.323178e-02	k: 115267	n:4990000
KS ci ratio: 1.959999e+00	ci left: 1.239824e-07	ci right 1.756968e-06	k: 3	n:4990000
CCNF   4990000 perm   10782 sec   (463 perm/sec)   p_kst 6.012024e-07   p_cons 2.309960e-02   p_joint 6.012024e-07

Joint ci ratio: 1.959999e+00	ci left: 1.237344e-07	ci right 1.753454e-06	k: 3	n:5000000
Cons ci ratio: 1.140141e-02	ci left: 2.296432e-02	ci right 2.322784e-02	k: 115479	n:5000000
KS ci ratio: 1.959999e+00	ci left: 1.237344e-07	ci right 1.753454e-06	k: 3	n:5000000
CCNF   5000000 perm   10822 sec   (462 perm/sec)   p_kst 6.000000e-07   p_cons 2.309580e-02   p_joint 6.000000e-07

Outputting figure to mutsig2_images.part000000000032/CCNF.3_2429_5000000_6e-07_0.023096_6e-07.png
                gene_name: CCNF
               theta_stop: 2.0 
                    nperm: 5000000 
                     p_ks: 6.00e-07 
        ci_ks_bounds_left: 1.24e-07 
       ci_ks_bounds_right: 1.75e-06 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.023 
                  p_joint: 6.00e-07 
     ci_joint_bounds_left: 1.24e-07 
    ci_joint_bounds_right: 1.75e-06 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000032
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 32 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1650>
Subject: Job 9877006: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1650>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000033> was used as the working directory.
Started at Fri Oct  5 22:32:03 2012
Results reported at Fri Oct  5 22:33:44 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000033.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000033.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 33  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000033.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    103.81 sec.
    Max Memory :      1137 MB
    Max Swap   :      3967 MB

    Max Processes  :         7
    Max Threads    :        55

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
33
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 33
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 33: processing genes 2902 - 2992
Calculating significance of each gene.
Using projection method.
2902	CCNJL	1
2903	CCNK	1
2904	CCNL1	1
2905	CCNL2	1
2906	CCNO	1
2907	CCNT1	1
2908	CCNT2	1
2909	CCNY	1
2910	CCNYL1	4.156412e-02
2911	CCPG1	1
2912	CCR1	1
2913	CCR10	1
2914	CCR2	1
2915	CCR3	1
2916	CCR4	1
2917	CCR5	1
2918	CCR6	1
2919	CCR7	1
2920	CCR8	1
2921	CCR9	1
2922	CCRL1	1
2923	CCRL2	1
2924	CCRN4L	1
2925	CCS	1
2926	CCT2	1
2927	CCT3	1
2928	CCT4	1
2929	CCT5	1
2930	CCT6A	1
2931	CCT6B	1
2932	CCT7	1
2933	CCT8	1
2934	CCT8L2	1.253944e-02
2935	CD101	1
2936	CD109	2.058029e-01
2937	CD14	1
2938	CD151	1
2939	CD160	1
2940	CD163	1
2941	CD163L1	1
2942	CD164	1
2943	CD164L2	1
2944	CD177	1
2945	CD180	1
2946	CD19	1
2947	CD1A	1
2948	CD1B	1.070463e-02
2949	CD1C	1
2950	CD1D	1
2951	CD1E	9.214613e-02
2952	CD2	1
2953	CD200	1
2954	CD200R1	1
2955	CD200R1L	1
2956	CD207	1
2957	CD209	1.074201e-01
2958	CD22	1
2959	CD226	1.023873e-01
2960	CD244	1
2961	CD247	1
2962	CD248	1
2963	CD27	1
2964	CD274	1
2965	CD276	1
2966	CD28	1
2967	CD2AP	1
2968	CD2BP2	1
2969	CD300A	1
2970	CD300C	1
2971	CD300E	1
In gene CD300LB the following bins exceed PROBCAP:
    PRAD-CH-5792	categ 6	N = 733     n = 1	mu =   2.67e-07
2972	CD300LB	2.534361e-02
2973	CD300LD	1
2974	CD300LF	1
2975	CD300LG	1
2976	CD302	1
2977	CD320	1
2978	CD33	1
2979	CD34	1
2980	CD36	1
2981	CD37	1
2982	CD38	1
2983	CD3D	1
2984	CD3E	1
2985	CD3EAP	1
2986	CD3G	1
2987	CD4	1.433892e-01
2988	CD40	1
2989	CD40LG	1
2990	CD44	1
2991	CD46	1.119549e-01
2992	CD47	1
Done

Running MutSig 2:
Scatter job 33: processing genes 2902 - 2992
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CCT8L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.794040e-02	ci left: 3.048095e-01	ci right 3.230990e-01	k: 3139	n:10000
Cons ci ratio: 1.378589e-01	ci left: 6.962154e-02	ci right 8.002777e-02	k: 747	n:10000
KS ci ratio: 2.542302e-02	ci left: 6.948436e-01	ci right 7.128375e-01	k: 7039	n:10000
CCT8L2   10000 perm   2 sec   (5601 perm/sec)   p_kst 7.039000e-01   p_cons 7.470000e-02   p_joint 3.139000e-01

Joint ci ratio: 7.328493e-02	ci left: 1.205447e-01	ci right 1.297646e-01	k: 2502	n:20000
Cons ci ratio: 9.751825e-02	ci left: 7.109338e-02	ci right 7.843082e-02	k: 1494	n:20000
KS ci ratio: 1.796217e-02	ci left: 6.978707e-01	ci right 7.105699e-01	k: 14085	n:20000
CCT8L2   20000 perm   8 sec   (2621 perm/sec)   p_kst 7.042500e-01   p_cons 7.470000e-02   p_joint 1.251000e-01

Outputting figure to mutsig2_images.part000000000033/CCT8L2.2_1678_20000_0.70425_0.0747_0.1251.png
                gene_name: CCT8L2
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.078 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000033
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 33 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1533>
Subject: Job 9877008: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1533>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000034> was used as the working directory.
Started at Fri Oct  5 22:33:16 2012
Results reported at Fri Oct  5 22:36:08 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000034.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000034.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 34  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000034.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    195.00 sec.
    Max Memory :      1908 MB
    Max Swap   :      4642 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
34
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 34
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 34: processing genes 2993 - 3083
Calculating significance of each gene.
Using projection method.
2993	CD48	6.081490e-02
2994	CD5	1
2995	CD52	1
2996	CD53	1
2997	CD55	1
2998	CD58	1
2999	CD59	1
3000/18134 3000	CD5L	1
3001	CD6	1
3002	CD63	1
3003	CD68	1.830166e-02
3004	CD69	1
3005	CD7	1
3006	CD70	1
3007	CD72	1
3008	CD74	1
3009	CD79A	1
3010	CD79B	1
3011	CD80	1
3012	CD81	1
3013	CD82	1
3014	CD83	1
3015	CD84	1
3016	CD86	1
3017	CD8A	4.367649e-02
3018	CD8B	1
3019	CD9	1
3020	CD93	1
3021	CD96	1
3022	CD97	1
3023	CD99	1
3024	CD99L2	1
3025	CDA	1
3026	CDADC1	1
3027	CDAN1	1.516679e-01
3028	CDC123	1
3029	CDC14A	1
3030	CDC14B	1
3031	CDC16	1
3032	CDC20	1
3033	CDC20B	1
3034	CDC23	1
3035	CDC25A	1
3036	CDC25B	1
3037	CDC25C	1
3038	CDC26	1
3039	CDC27	7.462464e-02
3040	CDC34	1
3041	CDC37	1
3042	CDC37L1	1
3043	CDC40	1.446788e-01
3044	CDC42	1
3045	CDC42BPA	1
3046	CDC42BPB	3.862015e-01
3047	CDC42BPG	1
3048	CDC42EP1	1
3049	CDC42EP2	1
3050	CDC42EP3	1
3051	CDC42EP4	1
3052	CDC42SE1	1
3053	CDC42SE2	1
3054	CDC45	1
3055	CDC5L	1
3056	CDC6	1
3057	CDC7	1.739678e-01
3058	CDC73	1
3059	CDCA2	1
3060	CDCA3	1
3061	CDCA4	1
3062	CDCA5	1
3063	CDCA7	1
3064	CDCA7L	1
3065	CDCA8	1
3066	CDCP1	1
3067	CDCP2	2.225163e-02
3068	CDH1	9.609906e-02
3069	CDH10	1
3070	CDH11	1
3071	CDH12	1.251437e-01
3072	CDH13	1
3073	CDH15	1
3074	CDH16	1.485219e-01
3075	CDH17	1.344340e-01
3076	CDH18	1.960295e-02
3077	CDH19	3.266867e-02
3078	CDH2	1
3079	CDH20	1
3080	CDH22	1
3081	CDH23	5.875369e-01
3082	CDH24	1
3083	CDH26	1
Done

Running MutSig 2:
Scatter job 34: processing genes 2993 - 3083
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CDC27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.070530e-01	ci left: 3.100901e-02	ci right 3.826537e-02	k: 345	n:10000
Cons ci ratio: 5.671270e-02	ci left: 3.140359e-01	ci right 3.324672e-01	k: 3232	n:10000
KS ci ratio: 4.113205e-01	ci left: 7.153353e-03	ci right 1.094096e-02	k: 89	n:10000
CDC27   10000 perm   2 sec   (4301 perm/sec)   p_kst 8.900000e-03   p_cons 3.232000e-01   p_joint 3.450000e-02

Joint ci ratio: 2.223652e-01	ci left: 1.359738e-02	ci right 1.704562e-02	k: 305	n:20000
Cons ci ratio: 3.991485e-02	ci left: 3.188080e-01	ci right 3.318428e-01	k: 6506	n:20000
KS ci ratio: 2.737235e-01	ci left: 8.760815e-03	ci right 1.158433e-02	k: 202	n:20000
CDC27   20000 perm   9 sec   (2266 perm/sec)   p_kst 1.010000e-02   p_cons 3.253000e-01   p_joint 1.525000e-02

Joint ci ratio: 1.214993e-01	ci left: 3.149246e-02	ci right 3.559852e-02	k: 1005	n:30000
Cons ci ratio: 3.312608e-02	ci left: 3.129305e-01	ci right 3.235048e-01	k: 9546	n:30000
KS ci ratio: 2.236817e-01	ci left: 8.999499e-03	ci right 1.129686e-02	k: 303	n:30000
CDC27   30000 perm   11 sec   (2642 perm/sec)   p_kst 1.010000e-02   p_cons 3.182000e-01   p_joint 3.350000e-02

Joint ci ratio: 1.413089e-01	ci left: 1.753979e-02	ci right 2.023070e-02	k: 754	n:40000
Cons ci ratio: 2.860286e-02	ci left: 3.149312e-01	ci right 3.240950e-01	k: 12780	n:40000
KS ci ratio: 1.950151e-01	ci left: 9.024339e-03	ci right 1.099777e-02	k: 399	n:40000
CDC27   40000 perm   14 sec   (2865 perm/sec)   p_kst 9.975000e-03   p_cons 3.195000e-01   p_joint 1.885000e-02

Joint ci ratio: 1.235361e-01	ci left: 1.851926e-02	ci right 2.097695e-02	k: 986	n:50000
Cons ci ratio: 2.552476e-02	ci left: 3.164101e-01	ci right 3.246108e-01	k: 16025	n:50000
KS ci ratio: 1.773156e-01	ci left: 8.821240e-03	ci right 1.055640e-02	k: 483	n:50000
CDC27   50000 perm   17 sec   (2998 perm/sec)   p_kst 9.660000e-03   p_cons 3.205000e-01   p_joint 1.972000e-02

Joint ci ratio: 1.299755e-01	ci left: 1.396191e-02	ci right 1.591875e-02	k: 895	n:60000
Cons ci ratio: 2.335817e-02	ci left: 3.157030e-01	ci right 3.231811e-01	k: 19166	n:60000
KS ci ratio: 1.599042e-01	ci left: 9.123252e-03	ci right 1.072469e-02	k: 594	n:60000
CDC27   60000 perm   19 sec   (3083 perm/sec)   p_kst 9.900000e-03   p_cons 3.194333e-01   p_joint 1.491667e-02

Joint ci ratio: 1.205880e-01	ci left: 1.397393e-02	ci right 1.578090e-02	k: 1040	n:70000
Cons ci ratio: 2.166496e-02	ci left: 3.151915e-01	ci right 3.221092e-01	k: 22305	n:70000
KS ci ratio: 1.481685e-01	ci left: 9.166041e-03	ci right 1.064644e-02	k: 692	n:70000
CDC27   70000 perm   22 sec   (3114 perm/sec)   p_kst 9.885714e-03   p_cons 3.186429e-01   p_joint 1.485714e-02

Joint ci ratio: 1.193727e-01	ci left: 1.250549e-02	ci right 1.410510e-02	k: 1063	n:80000
Cons ci ratio: 2.025730e-02	ci left: 3.155961e-01	ci right 3.220671e-01	k: 25506	n:80000
KS ci ratio: 1.391323e-01	ci left: 9.141023e-03	ci right 1.051987e-02	k: 785	n:80000
CDC27   80000 perm   26 sec   (3082 perm/sec)   p_kst 9.812500e-03   p_cons 3.188250e-01   p_joint 1.328750e-02

Joint ci ratio: 1.154647e-01	ci left: 1.191385e-02	ci right 1.338448e-02	k: 1137	n:90000
Cons ci ratio: 1.909407e-02	ci left: 3.158888e-01	ci right 3.219896e-01	k: 28704	n:90000
KS ci ratio: 1.301571e-01	ci left: 9.327970e-03	ci right 1.063724e-02	k: 897	n:90000
CDC27   90000 perm   30 sec   (3032 perm/sec)   p_kst 9.966667e-03   p_cons 3.189333e-01   p_joint 1.263333e-02

Joint ci ratio: 1.104924e-01	ci left: 1.174274e-02	ci right 1.312575e-02	k: 1242	n:100000
Cons ci ratio: 1.807321e-02	ci left: 3.170293e-01	ci right 3.228212e-01	k: 31992	n:100000
KS ci ratio: 1.228439e-01	ci left: 9.460421e-03	ci right 1.070824e-02	k: 1007	n:100000
CDC27   100000 perm   33 sec   (3004 perm/sec)   p_kst 1.007000e-02   p_cons 3.199200e-01   p_joint 1.242000e-02

Joint ci ratio: 1.002167e-01	ci left: 1.303023e-02	ci right 1.441377e-02	k: 1508	n:110000
Cons ci ratio: 1.722648e-02	ci left: 3.173071e-01	ci right 3.228297e-01	k: 35207	n:110000
KS ci ratio: 1.163244e-01	ci left: 9.623445e-03	ci right 1.082077e-02	k: 1123	n:110000
CDC27   110000 perm   37 sec   (2941 perm/sec)   p_kst 1.020909e-02   p_cons 3.200636e-01   p_joint 1.370909e-02

Joint ci ratio: 1.022486e-01	ci left: 1.148093e-02	ci right 1.272615e-02	k: 1451	n:120000
Cons ci ratio: 1.648197e-02	ci left: 3.177185e-01	ci right 3.230069e-01	k: 38443	n:120000
KS ci ratio: 1.120285e-01	ci left: 9.533859e-03	ci right 1.067334e-02	k: 1211	n:120000
CDC27   120000 perm   41 sec   (2946 perm/sec)   p_kst 1.009167e-02   p_cons 3.203583e-01   p_joint 1.209167e-02

Joint ci ratio: 9.939507e-02	ci left: 1.123507e-02	ci right 1.241763e-02	k: 1536	n:130000
Cons ci ratio: 1.584142e-02	ci left: 3.176563e-01	ci right 3.227363e-01	k: 41625	n:130000
KS ci ratio: 1.084289e-01	ci left: 9.413832e-03	ci right 1.050050e-02	k: 1293	n:130000
CDC27   130000 perm   44 sec   (2949 perm/sec)   p_kst 9.946154e-03   p_cons 3.201923e-01   p_joint 1.181538e-02

Joint ci ratio: 9.198043e-02	ci left: 1.221770e-02	ci right 1.340260e-02	k: 1792	n:140000
Cons ci ratio: 1.527420e-02	ci left: 3.174925e-01	ci right 3.223864e-01	k: 44791	n:140000
KS ci ratio: 1.051938e-01	ci left: 9.304503e-03	ci right 1.034452e-02	k: 1374	n:140000
CDC27   140000 perm   48 sec   (2942 perm/sec)   p_kst 9.814286e-03   p_cons 3.199357e-01   p_joint 1.280000e-02

Joint ci ratio: 9.109904e-02	ci left: 1.163754e-02	ci right 1.275477e-02	k: 1828	n:150000
Cons ci ratio: 1.473560e-02	ci left: 3.181851e-01	ci right 3.229152e-01	k: 48082	n:150000
KS ci ratio: 1.023027e-01	ci left: 9.197178e-03	ci right 1.019525e-02	k: 1453	n:150000
CDC27   150000 perm   51 sec   (2932 perm/sec)   p_kst 9.686667e-03   p_cons 3.205467e-01   p_joint 1.218667e-02

Joint ci ratio: 9.228955e-02	ci left: 1.063513e-02	ci right 1.167019e-02	k: 1783	n:160000
Cons ci ratio: 1.427373e-02	ci left: 3.180763e-01	ci right 3.226552e-01	k: 51258	n:160000
KS ci ratio: 9.905208e-02	ci left: 9.213343e-03	ci right 1.017955e-02	k: 1550	n:160000
CDC27   160000 perm   55 sec   (2920 perm/sec)   p_kst 9.687500e-03   p_cons 3.203625e-01   p_joint 1.114375e-02

Outputting figure to mutsig2_images.part000000000034/CDC27.10_2569_160000_0.0096875_0.32036_0.011144.png
                gene_name: CDC27
               theta_stop: 0.099 
                    nperm: 160000 
                     p_ks: 0.0097 
        ci_ks_bounds_left: 0.0092 
       ci_ks_bounds_right: 0.010 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.012 

Current progress: 50 percent done.
CDH18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.097438e-02	ci left: 4.679675e-01	ci right 4.876454e-01	k: 4778	n:10000
KS ci ratio: 1.524659e-01	ci left: 5.725512e-02	ci right 6.680198e-02	k: 619	n:10000
CDH18   10000 perm   2 sec   (5027 perm/sec)   p_kst 6.190000e-02   p_cons 4.778000e-01   p_joint 1

Joint ci ratio: 1.376205e-02	ci left: 7.966611e-01	ci right 8.077509e-01	k: 16045	n:20000
Cons ci ratio: 2.830474e-02	ci left: 4.825490e-01	ci right 4.964541e-01	k: 9790	n:20000
KS ci ratio: 1.070320e-01	ci left: 5.947650e-02	ci right 6.625128e-02	k: 1256	n:20000
CDH18   20000 perm   4 sec   (4765 perm/sec)   p_kst 6.280000e-02   p_cons 4.895000e-01   p_joint 8.022500e-01

Joint ci ratio: 1.079495e-02	ci left: 8.102226e-01	ci right 8.190497e-01	k: 24440	n:30000
Cons ci ratio: 2.234466e-02	ci left: 5.006921e-01	ci right 5.120400e-01	k: 15191	n:30000
KS ci ratio: 8.790290e-02	ci left: 5.942755e-02	ci right 6.492429e-02	k: 1864	n:30000
CDH18   30000 perm   6 sec   (4622 perm/sec)   p_kst 6.213333e-02   p_cons 5.063667e-01   p_joint 8.146667e-01

Outputting figure to mutsig2_images.part000000000034/CDH18.2_2417_30000_0.062133_0.50637_0.81467.png
                gene_name: CDH18
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.062 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.065 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000034
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 34 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 9877010: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000035> was used as the working directory.
Started at Fri Oct  5 22:33:16 2012
Results reported at Fri Oct  5 22:34:26 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000035.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000035.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 35  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000035.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     63.59 sec.
    Max Memory :      2054 MB
    Max Swap   :      4732 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
35
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 35
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 35: processing genes 3084 - 3173
Calculating significance of each gene.
Using projection method.
3084	CDH3	1
3085	CDH4	1
3086	CDH5	2.618246e-02
3087	CDH6	3.455933e-02
3088	CDH7	1
3089	CDH8	2.066558e-01
3090	CDH9	1
3091	CDHR1	1
3092	CDHR2	1
3093	CDHR3	1
3094	CDHR5	1
3095	CDIPT	1
3096	CDK1	1
3097	CDK10	1
3098	CDK11A	1
3099	CDK11B	1
3100	CDK12	1
3101	CDK13	2.855563e-01
3102	CDK14	1
3103	CDK15	1
3104	CDK16	1
3105	CDK17	1
3106	CDK18	1
3107	CDK19	3.733100e-02
3108	CDK2	1
3109	CDK20	1
3110	CDK2AP1	1
3111	CDK2AP2	1
3112	CDK3	1
3113	CDK4	1
3114	CDK5	1
3115	CDK5R1	1
3116	CDK5R2	1
3117	CDK5RAP1	1
3118	CDK5RAP2	2.540630e-01
3119	CDK5RAP3	1
3120	CDK6	1
3121	CDK7	1
3122	CDK8	1
3123	CDK9	1
3124	CDKAL1	1
3125	CDKL1	1
3126	CDKL2	1
3127	CDKL3	9.354575e-02
3128	CDKL4	1
3129	CDKL5	1
3130	CDKN1A	1
3131	CDKN1B	6.715708e-04
3132	CDKN2A	1
3133	CDKN2AIP	1
3134	CDKN2AIPNL	2.742508e-02
3135	CDKN2B	1
3136	CDKN2C	1
3137	CDKN2D	1
3138	CDKN3	1
3139	CDNF	1
3140	CDO1	1
3141	CDON	1
3142	CDR1	5.118642e-02
3143	CDR2	1
3144	CDR2L	1
3145	CDRT1	1
3146	CDRT15	1
3147	CDRT4	1
3148	CDS1	1
3149	CDS2	1
3150	CDSN	1
3151	CDT1	1
3152	CDV3	1
3153	CDX1	1
3154	CDX2	1
3155	CDX4	1
3156	CDYL	1
3157	CDYL2	1
3158	CEACAM1	1
3159	CEACAM16	1
3160	CEACAM18	1
3161	CEACAM19	1
3162	CEACAM20	9.645713e-02
3163	CEACAM21	1
3164	CEACAM3	1
3165	CEACAM4	1
3166	CEACAM5	1
3167	CEACAM6	4.081480e-03
3168	CEACAM7	1
3169	CEACAM8	1
3170	CEBPD	1
3171	CEBPE	1
3172	CEBPG	1
3173	CEBPZ	8.569061e-02
Done

Running MutSig 2:
Scatter job 35: processing genes 3084 - 3173
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CDH5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.265884e-02	ci left: 1.759564e-01	ci right 1.912283e-01	k: 1835	n:10000
Cons ci ratio: 9.639384e-02	ci left: 1.350178e-01	ci right 1.487915e-01	k: 1418	n:10000
KS ci ratio: 4.353171e-02	ci left: 4.379204e-01	ci right 4.575101e-01	k: 4477	n:10000
CDH5   10000 perm   2 sec   (6611 perm/sec)   p_kst 4.477000e-01   p_cons 1.418000e-01   p_joint 1.835000e-01

Outputting figure to mutsig2_images.part000000000035/CDH5.2_2399_10000_0.4477_0.1418_0.1835.png
                gene_name: CDH5
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 25 percent done.
CDH6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.794440e-02	ci left: 5.063518e-01	ci right 5.260388e-01	k: 5162	n:10000
KS ci ratio: 1.681007e-02	ci left: 8.374510e-01	ci right 8.517477e-01	k: 8447	n:10000
CDH6   10000 perm   1 sec   (6873 perm/sec)   p_kst 8.447000e-01   p_cons 5.162000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CDH6.2_2417_10000_0.8447_0.5162_1.png
                gene_name: CDH6
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
CDKN1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.899088e-02	ci left: 4.927508e-01	ci right 5.124477e-01	k: 5026	n:10000
Cons ci ratio: 3.962757e-02	ci left: 4.846536e-01	ci right 5.043496e-01	k: 4945	n:10000
KS ci ratio: 3.601525e-02	ci left: 5.323740e-01	ci right 5.520014e-01	k: 5422	n:10000
CDKN1B   10000 perm   1 sec   (8298 perm/sec)   p_kst 5.422000e-01   p_cons 4.945000e-01   p_joint 5.026000e-01

Outputting figure to mutsig2_images.part000000000035/CDKN1B.2_605_10000_0.5422_0.4945_0.5026.png
                gene_name: CDKN1B
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 75 percent done.
CEACAM6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.279128e-02	ci left: 4.464018e-01	ci right 4.660237e-01	k: 4562	n:10000
KS ci ratio: 3.416833e-02	ci left: 5.584231e-01	ci right 5.779372e-01	k: 5682	n:10000
CEACAM6   10000 perm   1 sec   (8040 perm/sec)   p_kst 5.682000e-01   p_cons 4.562000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CEACAM6.2_1055_10000_0.5682_0.4562_1.png
                gene_name: CEACAM6
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000035
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 35 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 9877012: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000036> was used as the working directory.
Started at Fri Oct  5 22:34:19 2012
Results reported at Fri Oct  5 22:35:36 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000036.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000036.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 36  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000036.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     70.94 sec.
    Max Memory :      2056 MB
    Max Swap   :      4623 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
36
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 36
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 36: processing genes 3174 - 3264
Calculating significance of each gene.
Using projection method.
3174	CECR1	1.259810e-01
3175	CECR2	1
3176	CECR5	1
3177	CECR6	1
3178	CEL	1
3179	CELA1	1
3180	CELA2A	1
3181	CELA2B	1
3182	CELA3A	1
3183	CELA3B	1
3184	CELF1	1
3185	CELF2	1.041951e-01
3186	CELF3	1
3187	CELF4	1
3188	CELF5	1
3189	CELF6	1
3190	CELSR1	1
3191	CELSR2	1
3192	CELSR3	3.458216e-01
3193	CEMP1	1
3194	CEND1	1
3195	CENPA	1
3196	CENPB	1
3197	CENPBD1	1
3198	CENPC1	1
3199	CENPE	1
3200	CENPF	1
3201	CENPH	1
3202	CENPI	3.823563e-02
3203	CENPJ	1
3204	CENPK	1
3205	CENPL	1
3206	CENPM	1
3207	CENPN	1
3208	CENPO	1
3209	CENPP	3.901226e-02
3210	CENPQ	1
3211	CENPT	1
3212	CENPV	1
3213	CENPW	1
3214	CEP110	1
3215	CEP120	1
3216	CEP135	1
3217	CEP152	2.665416e-01
3218	CEP164	1
3219	CEP170	5.563265e-02
3220	CEP192	1
3221	CEP250	2.376815e-01
3222	CEP290	7.003046e-02
3223	CEP350	6.080258e-01
3224	CEP55	1
3225	CEP57	1
3226	CEP63	2.152922e-01
3227	CEP68	7.670411e-02
3228	CEP70	1
3229	CEP72	1
3230	CEP76	1
3231	CEP78	1
3232	CEP97	1.854752e-01
3233	CEPT1	1
3234	CER1	1
3235	CERCAM	1
3236	CERK	1
3237	CERKL	1
3238	CES1	1.493891e-01
3239	CES2	1
3240	CES3	1
3241	CES7	1
3242	CES8	1
3243	CETN1	1
3244	CETN2	1
3245	CETN3	1
3246	CETP	1
3247	CFB	1
3248	CFD	1
3249	CFDP1	1
3250	CFH	6.346630e-02
3251	CFHR1	1
3252	CFHR2	1
3253	CFHR3	6.754544e-02
3254	CFHR4	1
3255	CFHR5	2.146542e-02
3256	CFI	1
3257	CFL1	1
3258	CFL2	1
3259	CFLAR	1
3260	CFP	1
3261	CFTR	1
3262	CGA	1
3263	CGB	1
3264	CGB1	1
Done

Running MutSig 2:
Scatter job 36: processing genes 3174 - 3264
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CELSR3
Processing conservation and coverage...
99% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.498469e-02	ci left: 7.021059e-01	ci right 7.199711e-01	k: 7111	n:10000
KS ci ratio: 8.546557e-02	ci left: 1.663205e-01	ci right 1.812701e-01	k: 1737	n:10000
CELSR3   10000 perm   2 sec   (4290 perm/sec)   p_kst 1.737000e-01   p_cons 7.111000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000036/CELSR3.2_10079_10000_0.1737_0.7111_1.png
                gene_name: CELSR3
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
CEP170
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.056430e-03	ci left: 9.873032e-01	ci right 9.914042e-01	k: 9895	n:10000
Cons ci ratio: 4.188009e-02	ci left: 4.570825e-01	ci right 4.767368e-01	k: 4669	n:10000
KS ci ratio: 2.466887e-02	ci left: 7.073525e-01	ci right 7.251214e-01	k: 7163	n:10000
CEP170   10000 perm   2 sec   (6083 perm/sec)   p_kst 7.163000e-01   p_cons 4.669000e-01   p_joint 9.895000e-01

Outputting figure to mutsig2_images.part000000000036/CEP170.2_4861_10000_0.7163_0.4669_0.9895.png
                gene_name: CEP170
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 50 percent done.
CEP290
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.232463e-02	ci left: 9.043236e-01	ci right 9.156362e-01	k: 9101	n:10000
KS ci ratio: 4.007393e-02	ci left: 4.790570e-01	ci right 4.987494e-01	k: 4889	n:10000
CEP290   10000 perm   2 sec   (5033 perm/sec)   p_kst 4.889000e-01   p_cons 9.101000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000036/CEP290.2_7652_10000_0.4889_0.9101_1.png
                gene_name: CEP290
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
CFH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.938381e-02	ci left: 1.540423e-01	ci right 1.685555e-01	k: 1612	n:10000
Cons ci ratio: 1.072191e-01	ci left: 1.115436e-01	ci right 1.242799e-01	k: 1178	n:10000
KS ci ratio: 3.887410e-02	ci left: 4.942505e-01	ci right 5.139471e-01	k: 5041	n:10000
CFH   10000 perm   2 sec   (6433 perm/sec)   p_kst 5.041000e-01   p_cons 1.178000e-01   p_joint 1.612000e-01

Joint ci ratio: 6.827406e-02	ci left: 1.366477e-01	ci right 1.463568e-01	k: 2829	n:20000
Cons ci ratio: 7.664826e-02	ci left: 1.111998e-01	ci right 1.201123e-01	k: 2312	n:20000
KS ci ratio: 2.738044e-02	ci left: 4.991455e-01	ci right 5.130527e-01	k: 10122	n:20000
CFH   20000 perm   3 sec   (5781 perm/sec)   p_kst 5.061000e-01   p_cons 1.156000e-01   p_joint 1.414500e-01

Outputting figure to mutsig2_images.part000000000036/CFH.2_3802_20000_0.5061_0.1156_0.14145.png
                gene_name: CFH
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000036
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 36 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1730>
Subject: Job 9877014: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1730>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000037> was used as the working directory.
Started at Fri Oct  5 22:34:19 2012
Results reported at Fri Oct  5 22:50:29 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000037.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000037.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 37  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000037.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    980.04 sec.
    Max Memory :      2305 MB
    Max Swap   :      4689 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
37
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 37
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 37: processing genes 3265 - 3355
Calculating significance of each gene.
Using projection method.
3265	CGB2	1
3266	CGB5	1
3267	CGB7	1
3268	CGB8	1
3269	CGGBP1	1
3270	CGN	1
3271	CGNL1	1
3272	CGREF1	9.969438e-03
3273	CGRRF1	1
3274	CH25H	1
3275	CHAC1	1
3276	CHAC2	1
3277	CHAD	1
3278	CHAF1A	2.919494e-02
3279	CHAF1B	1
3280	CHAT	3.165162e-02
3281	CHCHD1	1
3282	CHCHD10	1
3283	CHCHD2	1
3284	CHCHD3	1
3285	CHCHD4	1
3286	CHCHD5	1
3287	CHCHD6	1
3288	CHCHD7	1
3289	CHCHD8	1
3290	CHD1	4.331597e-02
3291	CHD1L	2.456411e-01
3292	CHD2	4.406070e-01
3293	CHD3	3.740154e-01
3294	CHD4	2.322715e-01
3295	CHD5	1
3296	CHD6	1.083686e-01
3297	CHD7	1
3298	CHD8	1
3299	CHD9	1
3300	CHDH	1
3301	CHEK1	1
3302	CHEK2	7.303215e-03
3303	CHERP	5.489053e-02
3304	CHFR	1
3305	CHGA	1
3306	CHGB	1
3307	CHI3L1	1
3308	CHI3L2	1
3309	CHIA	1.270167e-01
3310	CHIC2	1
3311	CHID1	1
3312	CHIT1	1
3313	CHKA	1
3314	CHKB	1
3315	CHL1	8.696831e-02
3316	CHM	1
3317	CHML	1
3318	CHMP1A	1
3319	CHMP1B	1
3320	CHMP2A	1
3321	CHMP2B	1
3322	CHMP4A	1
3323	CHMP4B	1
3324	CHMP4C	1
3325	CHMP5	1
3326	CHMP6	1
3327	CHMP7	1
3328	CHN1	1
3329	CHN2	1
3330	CHODL	1
3331	CHORDC1	1
3332	CHP	1.369815e-02
3333	CHP2	1
3334	CHPF	1.674727e-01
3335	CHPF2	1
3336	CHPT1	1
3337	CHRAC1	1
3338	CHRD	1.148257e-01
3339	CHRDL1	1
3340	CHRDL2	1
3341	CHRFAM7A	1
3342	CHRM1	1
3343	CHRM2	1
3344	CHRM3	1
3345	CHRM4	1.470843e-01
3346	CHRM5	1
3347	CHRNA1	1
3348	CHRNA10	1
3349	CHRNA2	1
3350	CHRNA3	1
3351	CHRNA4	1
3352	CHRNA5	1
3353	CHRNA6	1
3354	CHRNA7	1
3355	CHRNA9	1
Done

Running MutSig 2:
Scatter job 37: processing genes 3265 - 3355
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CHAF1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.942301e-02	ci left: 7.949654e-01	ci right 8.106578e-01	k: 8029	n:10000
Cons ci ratio: 2.369416e-02	ci left: 7.236062e-01	ci right 7.410582e-01	k: 7324	n:10000
KS ci ratio: 4.625609e-02	ci left: 4.082083e-01	ci right 4.276396e-01	k: 4179	n:10000
CHAF1A   10000 perm   2 sec   (6389 perm/sec)   p_kst 4.179000e-01   p_cons 7.324000e-01   p_joint 8.029000e-01

Outputting figure to mutsig2_images.part000000000037/CHAF1A.2_2931_10000_0.4179_0.7324_0.8029.png
                gene_name: CHAF1A
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 17 percent done.
CHAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.440970e-02	ci left: 3.323022e-01	ci right 3.509901e-01	k: 3416	n:10000
Cons ci ratio: 6.352037e-02	ci left: 2.669579e-01	ci right 2.845729e-01	k: 2757	n:10000
KS ci ratio: 7.300181e-02	ci left: 2.155637e-01	ci right 2.319975e-01	k: 2237	n:10000
CHAT   10000 perm   1 sec   (7007 perm/sec)   p_kst 2.237000e-01   p_cons 2.757000e-01   p_joint 3.416000e-01

Outputting figure to mutsig2_images.part000000000037/CHAT.2_2351_10000_0.2237_0.2757_0.3416.png
                gene_name: CHAT
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 33 percent done.
CHD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.748480e-02	ci left: 3.955567e-01	ci right 4.148985e-01	k: 4052	n:10000
Cons ci ratio: 9.386443e-02	ci left: 1.414855e-01	ci right 1.555199e-01	k: 1484	n:10000
KS ci ratio: 2.735360e-02	ci left: 6.632026e-01	ci right 6.816968e-01	k: 6725	n:10000
CHD1   10000 perm   2 sec   (5773 perm/sec)   p_kst 6.725000e-01   p_cons 1.484000e-01   p_joint 4.052000e-01

Outputting figure to mutsig2_images.part000000000037/CHD1.2_5273_10000_0.6725_0.1484_0.4052.png
                gene_name: CHD1
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 50 percent done.
CHD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.676458e-02	ci left: 3.136389e-01	ci right 3.320644e-01	k: 3228	n:10000
KS ci ratio: 4.062302e-02	ci left: 4.722629e-01	ci right 4.919476e-01	k: 4821	n:10000
CHD4   10000 perm   2 sec   (5603 perm/sec)   p_kst 4.821000e-01   p_cons 3.228000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000037/CHD4.2_5895_10000_0.4821_0.3228_1.png
                gene_name: CHD4
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
CHD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.072783e-02	ci left: 7.732695e-01	ci right 7.895662e-01	k: 7815	n:10000
Cons ci ratio: 3.113034e-02	ci left: 6.035728e-01	ci right 6.227612e-01	k: 6132	n:10000
KS ci ratio: 5.875724e-02	ci left: 2.988593e-01	ci right 3.170527e-01	k: 3079	n:10000
CHD6   10000 perm   2 sec   (4938 perm/sec)   p_kst 3.079000e-01   p_cons 6.132000e-01   p_joint 7.815000e-01

Outputting figure to mutsig2_images.part000000000037/CHD6.2_8292_10000_0.3079_0.6132_0.7815.png
                gene_name: CHD6
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 83 percent done.
CHEK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.011330e+00	ci left: 7.655977e-04	ci right 2.347848e-03	k: 14	n:10000
Cons ci ratio: 5.498298e-02	ci left: 3.276348e-01	ci right 3.462602e-01	k: 3369	n:10000
KS ci ratio: 1.238931e+00	ci left: 4.116173e-04	ci right 1.707790e-03	k: 9	n:10000
CHEK2   10000 perm   1 sec   (7572 perm/sec)   p_kst 9.000000e-04   p_cons 3.369000e-01   p_joint 1.400000e-03

Joint ci ratio: 6.527288e-01	ci left: 1.219232e-03	ci right 2.432994e-03	k: 35	n:20000
Cons ci ratio: 3.741166e-02	ci left: 3.477176e-01	ci right 3.610248e-01	k: 7087	n:20000
KS ci ratio: 1.011735e+00	ci left: 3.827477e-04	ci right 1.174202e-03	k: 14	n:20000
CHEK2   20000 perm   3 sec   (6715 perm/sec)   p_kst 7.000000e-04   p_cons 3.543500e-01   p_joint 1.750000e-03

Joint ci ratio: 7.540522e-01	ci left: 5.662111e-04	ci right 1.269611e-03	k: 26	n:30000
Cons ci ratio: 3.064462e-02	ci left: 3.474903e-01	ci right 3.583382e-01	k: 10587	n:30000
KS ci ratio: 7.540522e-01	ci left: 5.662111e-04	ci right 1.269611e-03	k: 26	n:30000
CHEK2   30000 perm   5 sec   (6361 perm/sec)   p_kst 8.666667e-04   p_cons 3.529000e-01   p_joint 8.666667e-04

Joint ci ratio: 6.719803e-01	ci left: 5.679580e-04	ci right 1.158413e-03	k: 33	n:40000
Cons ci ratio: 2.651047e-02	ci left: 3.487137e-01	ci right 3.581076e-01	k: 14136	n:40000
KS ci ratio: 6.719803e-01	ci left: 5.679580e-04	ci right 1.158413e-03	k: 33	n:40000
CHEK2   40000 perm   7 sec   (6138 perm/sec)   p_kst 8.250000e-04   p_cons 3.534000e-01   p_joint 8.250000e-04

Joint ci ratio: 5.655260e-01	ci left: 6.907559e-04	ci right 1.249807e-03	k: 47	n:50000
Cons ci ratio: 2.372024e-02	ci left: 3.490490e-01	ci right 3.574480e-01	k: 17662	n:50000
KS ci ratio: 5.655260e-01	ci left: 6.907559e-04	ci right 1.249807e-03	k: 47	n:50000
CHEK2   50000 perm   8 sec   (5959 perm/sec)   p_kst 9.400000e-04   p_cons 3.532400e-01   p_joint 9.400000e-04

Joint ci ratio: 5.235832e-01	ci left: 6.906311e-04	ci right 1.193003e-03	k: 55	n:60000
Cons ci ratio: 2.250290e-02	ci left: 3.320873e-01	ci right 3.396619e-01	k: 20152	n:60000
KS ci ratio: 5.235832e-01	ci left: 6.906311e-04	ci right 1.193003e-03	k: 55	n:60000
CHEK2   60000 perm   10 sec   (5796 perm/sec)   p_kst 9.166667e-04   p_cons 3.358667e-01   p_joint 9.166667e-04

Joint ci ratio: 5.101218e-01	ci left: 6.292273e-04	ci right 1.070991e-03	k: 58	n:70000
Cons ci ratio: 2.080687e-02	ci left: 3.329423e-01	ci right 3.399569e-01	k: 23551	n:70000
KS ci ratio: 5.101218e-01	ci left: 6.292273e-04	ci right 1.070991e-03	k: 58	n:70000
CHEK2   70000 perm   12 sec   (5666 perm/sec)   p_kst 8.285714e-04   p_cons 3.364429e-01   p_joint 8.285714e-04

Joint ci ratio: 4.617656e-01	ci left: 6.932079e-04	ci right 1.119331e-03	k: 71	n:80000
Cons ci ratio: 1.950648e-02	ci left: 3.321780e-01	ci right 3.387339e-01	k: 26836	n:80000
KS ci ratio: 4.617656e-01	ci left: 6.932079e-04	ci right 1.119331e-03	k: 71	n:80000
CHEK2   80000 perm   14 sec   (5547 perm/sec)   p_kst 8.875000e-04   p_cons 3.354500e-01   p_joint 8.875000e-04

Joint ci ratio: 4.380721e-01	ci left: 6.950046e-04	ci right 1.093855e-03	k: 79	n:90000
Cons ci ratio: 1.839988e-02	ci left: 3.321490e-01	ci right 3.383283e-01	k: 30171	n:90000
KS ci ratio: 4.380721e-01	ci left: 6.950046e-04	ci right 1.093855e-03	k: 79	n:90000
CHEK2   90000 perm   17 sec   (5426 perm/sec)   p_kst 8.777778e-04   p_cons 3.352333e-01   p_joint 8.777778e-04

Joint ci ratio: 4.130162e-01	ci left: 7.148022e-04	ci right 1.095109e-03	k: 89	n:100000
Cons ci ratio: 1.745427e-02	ci left: 3.323439e-01	ci right 3.382057e-01	k: 33527	n:100000
KS ci ratio: 4.130162e-01	ci left: 7.148022e-04	ci right 1.095109e-03	k: 89	n:100000
CHEK2   100000 perm   19 sec   (5310 perm/sec)   p_kst 8.900000e-04   p_cons 3.352700e-01   p_joint 8.900000e-04

Joint ci ratio: 3.770152e-01	ci left: 7.972398e-04	ci right 1.175322e-03	k: 107	n:110000
Cons ci ratio: 1.665279e-02	ci left: 3.321925e-01	ci right 3.377799e-01	k: 36848	n:110000
KS ci ratio: 3.770152e-01	ci left: 7.972398e-04	ci right 1.175322e-03	k: 107	n:110000
CHEK2   110000 perm   21 sec   (5203 perm/sec)   p_kst 9.727273e-04   p_cons 3.349818e-01   p_joint 9.727273e-04

Joint ci ratio: 3.606863e-01	ci left: 8.064162e-04	ci right 1.168399e-03	k: 117	n:120000
Cons ci ratio: 1.593963e-02	ci left: 3.324292e-01	ci right 3.377788e-01	k: 40212	n:120000
KS ci ratio: 3.606863e-01	ci left: 8.064162e-04	ci right 1.168399e-03	k: 117	n:120000
CHEK2   120000 perm   24 sec   (5101 perm/sec)   p_kst 9.750000e-04   p_cons 3.351000e-01   p_joint 9.750000e-04

Joint ci ratio: 3.476725e-01	ci left: 8.074574e-04	ci right 1.153886e-03	k: 126	n:130000
Cons ci ratio: 1.531723e-02	ci left: 3.324495e-01	ci right 3.375886e-01	k: 43552	n:130000
KS ci ratio: 3.476725e-01	ci left: 8.074574e-04	ci right 1.153886e-03	k: 126	n:130000
CHEK2   130000 perm   26 sec   (5010 perm/sec)   p_kst 9.692308e-04   p_cons 3.350154e-01   p_joint 9.692308e-04

Joint ci ratio: 3.287910e-01	ci left: 8.478349e-04	ci right 1.187664e-03	k: 141	n:140000
Cons ci ratio: 1.476319e-02	ci left: 3.324490e-01	ci right 3.374006e-01	k: 46889	n:140000
KS ci ratio: 3.287910e-01	ci left: 8.478349e-04	ci right 1.187664e-03	k: 141	n:140000
CHEK2   140000 perm   28 sec   (4921 perm/sec)   p_kst 1.007143e-03   p_cons 3.349214e-01   p_joint 1.007143e-03

Joint ci ratio: 3.146982e-01	ci left: 8.709852e-04	ci right 1.202123e-03	k: 154	n:150000
Cons ci ratio: 1.425604e-02	ci left: 3.327378e-01	ci right 3.375220e-01	k: 50269	n:150000
KS ci ratio: 3.146982e-01	ci left: 8.709852e-04	ci right 1.202123e-03	k: 154	n:150000
CHEK2   150000 perm   31 sec   (4839 perm/sec)   p_kst 1.026667e-03   p_cons 3.351267e-01   p_joint 1.026667e-03

Joint ci ratio: 3.078274e-01	ci left: 8.568808e-04	ci right 1.174148e-03	k: 161	n:160000
Cons ci ratio: 1.380787e-02	ci left: 3.326685e-01	ci right 3.373000e-01	k: 53597	n:160000
KS ci ratio: 3.078274e-01	ci left: 8.568808e-04	ci right 1.174148e-03	k: 161	n:160000
CHEK2   160000 perm   34 sec   (4757 perm/sec)   p_kst 1.006250e-03   p_cons 3.349813e-01   p_joint 1.006250e-03

Joint ci ratio: 2.928394e-01	ci left: 8.989490e-04	ci right 1.212585e-03	k: 178	n:170000
Cons ci ratio: 1.338922e-02	ci left: 3.329500e-01	ci right 3.374438e-01	k: 56983	n:170000
KS ci ratio: 2.928394e-01	ci left: 8.989490e-04	ci right 1.212585e-03	k: 178	n:170000
CHEK2   170000 perm   36 sec   (4678 perm/sec)   p_kst 1.047059e-03   p_cons 3.351941e-01   p_joint 1.047059e-03

Joint ci ratio: 2.784282e-01	ci left: 9.470097e-04	ci right 1.258306e-03	k: 197	n:180000
Cons ci ratio: 1.300647e-02	ci left: 3.332022e-01	ci right 3.375698e-01	k: 60369	n:180000
KS ci ratio: 2.784282e-01	ci left: 9.470097e-04	ci right 1.258306e-03	k: 197	n:180000
CHEK2   180000 perm   39 sec   (4602 perm/sec)   p_kst 1.094444e-03   p_cons 3.353833e-01   p_joint 1.094444e-03

Joint ci ratio: 2.665699e-01	ci left: 9.854370e-04	ci right 1.293267e-03	k: 215	n:190000
Cons ci ratio: 1.221594e-02	ci left: 3.493213e-01	ci right 3.536200e-01	k: 66779	n:190000
KS ci ratio: 2.665699e-01	ci left: 9.854370e-04	ci right 1.293267e-03	k: 215	n:190000
CHEK2   190000 perm   42 sec   (4531 perm/sec)   p_kst 1.131579e-03   p_cons 3.514684e-01   p_joint 1.131579e-03

Joint ci ratio: 1.225471e-01	ci left: 4.777966e-03	ci right 5.406510e-03	k: 1017	n:200000
Cons ci ratio: 1.191364e-02	ci left: 3.491076e-01	ci right 3.532967e-01	k: 70240	n:200000
KS ci ratio: 2.600312e-01	ci left: 9.875357e-04	ci right 1.287225e-03	k: 226	n:200000
CHEK2   200000 perm   45 sec   (4460 perm/sec)   p_kst 1.130000e-03   p_cons 3.512000e-01   p_joint 5.085000e-03

Joint ci ratio: 1.194198e-01	ci left: 4.799808e-03	ci right 5.413974e-03	k: 1071	n:210000
Cons ci ratio: 1.162592e-02	ci left: 3.491819e-01	ci right 3.532699e-01	k: 73757	n:210000
KS ci ratio: 2.508059e-01	ci left: 1.016284e-03	ci right 1.312048e-03	k: 243	n:210000
CHEK2   210000 perm   48 sec   (4393 perm/sec)   p_kst 1.157143e-03   p_cons 3.512238e-01   p_joint 5.100000e-03

Joint ci ratio: 1.164683e-01	ci left: 4.824263e-03	ci right 5.425253e-03	k: 1126	n:220000
Cons ci ratio: 1.135752e-02	ci left: 3.492731e-01	ci right 3.532672e-01	k: 77279	n:220000
KS ci ratio: 2.477811e-01	ci left: 9.956567e-04	ci right 1.281385e-03	k: 249	n:220000
CHEK2   220000 perm   51 sec   (4304 perm/sec)   p_kst 1.131818e-03   p_cons 3.512682e-01   p_joint 5.118182e-03

Joint ci ratio: 1.138223e-01	ci left: 4.838313e-03	ci right 5.426439e-03	k: 1179	n:230000
Cons ci ratio: 1.110732e-02	ci left: 3.493401e-01	ci right 3.532463e-01	k: 80797	n:230000
KS ci ratio: 2.429701e-01	ci left: 9.931723e-04	ci right 1.271819e-03	k: 259	n:230000
CHEK2   230000 perm   54 sec   (4239 perm/sec)   p_kst 1.126087e-03   p_cons 3.512913e-01   p_joint 5.126087e-03

Joint ci ratio: 1.116678e-01	ci left: 4.822976e-03	ci right 5.397409e-03	k: 1225	n:240000
Cons ci ratio: 1.087882e-02	ci left: 3.491568e-01	ci right 3.529801e-01	k: 84256	n:240000
KS ci ratio: 2.375497e-01	ci left: 9.987808e-04	ci right 1.271830e-03	k: 271	n:240000
CHEK2   240000 perm   57 sec   (4177 perm/sec)   p_kst 1.129167e-03   p_cons 3.510667e-01   p_joint 5.104167e-03

Joint ci ratio: 1.201461e-01	ci left: 3.985176e-03	ci right 4.498422e-03	k: 1059	n:250000
Cons ci ratio: 1.064731e-02	ci left: 3.496961e-01	ci right 3.534433e-01	k: 87892	n:250000
KS ci ratio: 2.349748e-01	ci left: 9.814079e-04	ci right 1.246377e-03	k: 277	n:250000
CHEK2   250000 perm   61 sec   (4119 perm/sec)   p_kst 1.108000e-03   p_cons 3.515680e-01   p_joint 4.236000e-03

Joint ci ratio: 1.180498e-01	ci left: 3.973698e-03	ci right 4.475914e-03	k: 1097	n:260000
Cons ci ratio: 1.043876e-02	ci left: 3.498105e-01	ci right 3.534851e-01	k: 91428	n:260000
KS ci ratio: 2.300615e-01	ci left: 9.871274e-04	ci right 1.247276e-03	k: 289	n:260000
CHEK2   260000 perm   64 sec   (4062 perm/sec)   p_kst 1.111538e-03   p_cons 3.516462e-01   p_joint 4.219231e-03

Joint ci ratio: 1.541651e-01	ci left: 2.204697e-03	ci right 2.576483e-03	k: 644	n:270000
Cons ci ratio: 1.024741e-02	ci left: 3.496767e-01	ci right 3.532821e-01	k: 94899	n:270000
KS ci ratio: 2.254440e-01	ci left: 9.924764e-04	ci right 1.248056e-03	k: 301	n:270000
CHEK2   270000 perm   67 sec   (4008 perm/sec)   p_kst 1.114815e-03   p_cons 3.514778e-01   p_joint 2.385185e-03

Joint ci ratio: 1.502530e-01	ci left: 2.242765e-03	ci right 2.610512e-03	k: 678	n:280000
Cons ci ratio: 1.006700e-02	ci left: 3.495173e-01	ci right 3.530572e-01	k: 98360	n:280000
KS ci ratio: 2.196974e-01	ci left: 1.010990e-03	ci right 1.263804e-03	k: 317	n:280000
CHEK2   280000 perm   71 sec   (3948 perm/sec)   p_kst 1.132143e-03   p_cons 3.512857e-01   p_joint 2.421429e-03

Joint ci ratio: 1.480890e-01	ci left: 2.231819e-03	ci right 2.592033e-03	k: 698	n:290000
Cons ci ratio: 9.891903e-03	ci left: 3.495486e-01	ci right 3.530268e-01	k: 101873	n:290000
KS ci ratio: 2.169863e-01	ci left: 1.002205e-03	ci right 1.249318e-03	k: 325	n:290000
CHEK2   290000 perm   74 sec   (3897 perm/sec)   p_kst 1.120690e-03   p_cons 3.512862e-01   p_joint 2.406897e-03

Joint ci ratio: 1.461177e-01	ci left: 2.218426e-03	ci right 2.571296e-03	k: 717	n:300000
Cons ci ratio: 9.723358e-03	ci left: 3.496848e-01	ci right 3.531048e-01	k: 105418	n:300000
KS ci ratio: 2.134157e-01	ci left: 1.003489e-03	ci right 1.246314e-03	k: 336	n:300000
CHEK2   300000 perm   78 sec   (3847 perm/sec)   p_kst 1.120000e-03   p_cons 3.513933e-01   p_joint 2.390000e-03

Joint ci ratio: 1.444196e-01	ci left: 2.199708e-03	ci right 2.545184e-03	k: 734	n:310000
Cons ci ratio: 9.557462e-03	ci left: 3.500833e-01	ci right 3.534485e-01	k: 109047	n:310000
KS ci ratio: 2.112346e-01	ci left: 9.924975e-04	ci right 1.229890e-03	k: 343	n:310000
CHEK2   310000 perm   82 sec   (3798 perm/sec)   p_kst 1.106452e-03   p_cons 3.517645e-01   p_joint 2.367742e-03

Joint ci ratio: 1.429701e-01	ci left: 2.176155e-03	ci right 2.514208e-03	k: 749	n:320000
Cons ci ratio: 9.408017e-03	ci left: 3.500578e-01	ci right 3.533698e-01	k: 112548	n:320000
KS ci ratio: 2.079362e-01	ci left: 9.940530e-04	ci right 1.227633e-03	k: 354	n:320000
CHEK2   320000 perm   85 sec   (3752 perm/sec)   p_kst 1.106250e-03   p_cons 3.517125e-01   p_joint 2.340625e-03

Joint ci ratio: 1.400125e-01	ci left: 2.203750e-03	ci right 2.538418e-03	k: 781	n:330000
Cons ci ratio: 9.264630e-03	ci left: 3.500706e-01	ci right 3.533320e-01	k: 116061	n:330000
KS ci ratio: 2.039526e-01	ci left: 1.004167e-03	ci right 1.235040e-03	k: 368	n:330000
CHEK2   330000 perm   89 sec   (3704 perm/sec)   p_kst 1.115152e-03   p_cons 3.517000e-01   p_joint 2.366667e-03

Joint ci ratio: 1.384296e-01	ci left: 2.190030e-03	ci right 2.518544e-03	k: 799	n:340000
Cons ci ratio: 9.124134e-03	ci left: 3.502564e-01	ci right 3.534697e-01	k: 119633	n:340000
KS ci ratio: 2.017780e-01	ci left: 9.969668e-04	ci right 1.223439e-03	k: 376	n:340000
CHEK2   340000 perm   93 sec   (3658 perm/sec)   p_kst 1.105882e-03   p_cons 3.518618e-01   p_joint 2.350000e-03

Joint ci ratio: 1.981319e-01	ci left: 1.006480e-03	ci right 1.230483e-03	k: 390	n:350000
Cons ci ratio: 8.996938e-03	ci left: 3.500722e-01	ci right 3.532388e-01	k: 123079	n:350000
KS ci ratio: 1.981319e-01	ci left: 1.006480e-03	ci right 1.230483e-03	k: 390	n:350000
CHEK2   350000 perm   97 sec   (3611 perm/sec)   p_kst 1.114286e-03   p_cons 3.516543e-01   p_joint 1.114286e-03

Joint ci ratio: 1.345341e-01	ci left: 2.194460e-03	ci right 2.513634e-03	k: 846	n:360000
Cons ci ratio: 8.870915e-03	ci left: 3.501039e-01	ci right 3.532262e-01	k: 126599	n:360000
KS ci ratio: 1.963829e-01	ci left: 9.970058e-04	ci right 1.216707e-03	k: 397	n:360000
CHEK2   360000 perm   101 sec   (3569 perm/sec)   p_kst 1.102778e-03   p_cons 3.516639e-01   p_joint 2.350000e-03

Joint ci ratio: 1.932517e-01	ci left: 1.003482e-03	ci right 1.220669e-03	k: 410	n:370000
Cons ci ratio: 8.751808e-03	ci left: 3.500424e-01	ci right 3.531221e-01	k: 130085	n:370000
KS ci ratio: 1.932517e-01	ci left: 1.003482e-03	ci right 1.220669e-03	k: 410	n:370000
CHEK2   370000 perm   105 sec   (3525 perm/sec)   p_kst 1.108108e-03   p_cons 3.515811e-01   p_joint 1.108108e-03

Joint ci ratio: 1.904906e-01	ci left: 1.007136e-03	ci right 1.221640e-03	k: 422	n:380000
Cons ci ratio: 8.637372e-03	ci left: 3.499844e-01	ci right 3.530231e-01	k: 133571	n:380000
KS ci ratio: 1.904906e-01	ci left: 1.007136e-03	ci right 1.221640e-03	k: 422	n:380000
CHEK2   380000 perm   109 sec   (3482 perm/sec)   p_kst 1.110526e-03   p_cons 3.515026e-01   p_joint 1.110526e-03

Joint ci ratio: 1.884964e-01	ci left: 1.003294e-03	ci right 1.214487e-03	k: 431	n:390000
Cons ci ratio: 8.835120e-03	ci left: 3.339566e-01	ci right 3.369228e-01	k: 130821	n:390000
KS ci ratio: 1.884964e-01	ci left: 1.003294e-03	ci right 1.214487e-03	k: 431	n:390000
CHEK2   390000 perm   113 sec   (3440 perm/sec)   p_kst 1.105128e-03   p_cons 3.354385e-01   p_joint 1.105128e-03

Joint ci ratio: 1.867756e-01	ci left: 9.972723e-04	ci right 1.205064e-03	k: 439	n:400000
Cons ci ratio: 8.730463e-03	ci left: 3.336446e-01	ci right 3.365727e-01	k: 134043	n:400000
KS ci ratio: 1.867756e-01	ci left: 9.972723e-04	ci right 1.205064e-03	k: 439	n:400000
CHEK2   400000 perm   118 sec   (3400 perm/sec)   p_kst 1.097500e-03   p_cons 3.351075e-01   p_joint 1.097500e-03

Joint ci ratio: 1.851012e-01	ci left: 9.915522e-04	ci right 1.196092e-03	k: 447	n:410000
Cons ci ratio: 8.619944e-03	ci left: 3.338378e-01	ci right 3.367303e-01	k: 137466	n:410000
KS ci ratio: 1.851012e-01	ci left: 9.915522e-04	ci right 1.196092e-03	k: 447	n:410000
CHEK2   410000 perm   122 sec   (3360 perm/sec)   p_kst 1.090244e-03   p_cons 3.352829e-01   p_joint 1.090244e-03

Joint ci ratio: 1.252016e-01	ci left: 2.182749e-03	ci right 2.476565e-03	k: 977	n:420000
Cons ci ratio: 8.518339e-03	ci left: 3.337699e-01	ci right 3.366276e-01	k: 140783	n:420000
KS ci ratio: 1.814895e-01	ci left: 1.008836e-03	ci right 1.212433e-03	k: 465	n:420000
CHEK2   420000 perm   126 sec   (3321 perm/sec)   p_kst 1.107143e-03   p_cons 3.351976e-01   p_joint 2.326190e-03

Joint ci ratio: 1.790094e-01	ci left: 1.014243e-03	ci right 1.215832e-03	k: 478	n:430000
Cons ci ratio: 8.418399e-03	ci left: 3.338029e-01	ci right 3.366272e-01	k: 144142	n:430000
KS ci ratio: 1.790094e-01	ci left: 1.014243e-03	ci right 1.215832e-03	k: 478	n:430000
CHEK2   430000 perm   131 sec   (3285 perm/sec)   p_kst 1.111628e-03   p_cons 3.352140e-01   p_joint 1.111628e-03

Joint ci ratio: 1.773514e-01	ci left: 1.010734e-03	ci right 1.209566e-03	k: 487	n:440000
Cons ci ratio: 8.323168e-03	ci left: 3.337665e-01	ci right 3.365584e-01	k: 147471	n:440000
KS ci ratio: 1.773514e-01	ci left: 1.010734e-03	ci right 1.209566e-03	k: 487	n:440000
CHEK2   440000 perm   135 sec   (3249 perm/sec)   p_kst 1.106818e-03   p_cons 3.351614e-01   p_joint 1.106818e-03

Joint ci ratio: 1.752101e-01	ci left: 1.013764e-03	ci right 1.210528e-03	k: 499	n:450000
Cons ci ratio: 8.234301e-03	ci left: 3.335588e-01	ci right 3.363189e-01	k: 150722	n:450000
KS ci ratio: 1.752101e-01	ci left: 1.013764e-03	ci right 1.210528e-03	k: 499	n:450000
CHEK2   450000 perm   140 sec   (3213 perm/sec)   p_kst 1.108889e-03   p_cons 3.349378e-01   p_joint 1.108889e-03

Joint ci ratio: 1.736546e-01	ci left: 1.010436e-03	ci right 1.204631e-03	k: 508	n:460000
Cons ci ratio: 8.144639e-03	ci left: 3.335556e-01	ci right 3.362856e-01	k: 154063	n:460000
KS ci ratio: 1.736546e-01	ci left: 1.010436e-03	ci right 1.204631e-03	k: 508	n:460000
CHEK2   460000 perm   145 sec   (3176 perm/sec)   p_kst 1.104348e-03   p_cons 3.349196e-01   p_joint 1.104348e-03

Joint ci ratio: 1.721398e-01	ci left: 1.007258e-03	ci right 1.198978e-03	k: 517	n:470000
Cons ci ratio: 8.058037e-03	ci left: 3.335422e-01	ci right 3.362428e-01	k: 157399	n:470000
KS ci ratio: 1.721398e-01	ci left: 1.007258e-03	ci right 1.198978e-03	k: 517	n:470000
CHEK2   470000 perm   150 sec   (3143 perm/sec)   p_kst 1.100000e-03   p_cons 3.348915e-01   p_joint 1.100000e-03

Joint ci ratio: 1.708263e-01	ci left: 1.002224e-03	ci right 1.191381e-03	k: 525	n:480000
Cons ci ratio: 7.972015e-03	ci left: 3.336481e-01	ci right 3.363206e-01	k: 160792	n:480000
KS ci ratio: 1.708263e-01	ci left: 1.002224e-03	ci right 1.191381e-03	k: 525	n:480000
CHEK2   480000 perm   154 sec   (3109 perm/sec)   p_kst 1.093750e-03   p_cons 3.349833e-01   p_joint 1.093750e-03

Joint ci ratio: 1.692254e-01	ci left: 1.001310e-03	ci right 1.188343e-03	k: 535	n:490000
Cons ci ratio: 7.889231e-03	ci left: 3.337192e-01	ci right 3.363644e-01	k: 164170	n:490000
KS ci ratio: 1.692254e-01	ci left: 1.001310e-03	ci right 1.188343e-03	k: 535	n:490000
CHEK2   490000 perm   159 sec   (3077 perm/sec)   p_kst 1.091837e-03   p_cons 3.350408e-01   p_joint 1.091837e-03

Joint ci ratio: 1.678226e-01	ci left: 9.985249e-04	ci right 1.183335e-03	k: 544	n:500000
Cons ci ratio: 7.808063e-03	ci left: 3.338395e-01	ci right 3.364584e-01	k: 167574	n:500000
KS ci ratio: 1.678226e-01	ci left: 9.985249e-04	ci right 1.183335e-03	k: 544	n:500000
CHEK2   500000 perm   164 sec   (3046 perm/sec)   p_kst 1.088000e-03   p_cons 3.351480e-01   p_joint 1.088000e-03

Joint ci ratio: 1.664542e-01	ci left: 9.958547e-04	ci right 1.178517e-03	k: 553	n:510000
Cons ci ratio: 7.729247e-03	ci left: 3.339612e-01	ci right 3.365544e-01	k: 170981	n:510000
KS ci ratio: 1.664542e-01	ci left: 9.958547e-04	ci right 1.178517e-03	k: 553	n:510000
CHEK2   510000 perm   169 sec   (3013 perm/sec)   p_kst 1.084314e-03   p_cons 3.352569e-01   p_joint 1.084314e-03

Joint ci ratio: 1.654131e-01	ci left: 9.896059e-04	ci right 1.169873e-03	k: 560	n:520000
Cons ci ratio: 7.656336e-03	ci left: 3.338708e-01	ci right 3.364387e-01	k: 174280	n:520000
KS ci ratio: 1.654131e-01	ci left: 9.896059e-04	ci right 1.169873e-03	k: 560	n:520000
CHEK2   520000 perm   174 sec   (2982 perm/sec)   p_kst 1.076923e-03   p_cons 3.351538e-01   p_joint 1.076923e-03

Joint ci ratio: 1.642466e-01	ci left: 9.854056e-04	ci right 1.163517e-03	k: 568	n:530000
Cons ci ratio: 7.584583e-03	ci left: 3.338348e-01	ci right 3.363783e-01	k: 177606	n:530000
KS ci ratio: 1.642466e-01	ci left: 9.854056e-04	ci right 1.163517e-03	k: 568	n:530000
CHEK2   530000 perm   179 sec   (2954 perm/sec)   p_kst 1.071698e-03   p_cons 3.351057e-01   p_joint 1.071698e-03

Joint ci ratio: 1.632460e-01	ci left: 9.795889e-04	ci right 1.155464e-03	k: 575	n:540000
Cons ci ratio: 7.515716e-03	ci left: 3.337466e-01	ci right 3.362662e-01	k: 180903	n:540000
KS ci ratio: 1.632460e-01	ci left: 9.795889e-04	ci right 1.155464e-03	k: 575	n:540000
CHEK2   540000 perm   185 sec   (2924 perm/sec)   p_kst 1.064815e-03   p_cons 3.350056e-01   p_joint 1.064815e-03

Joint ci ratio: 1.618473e-01	ci left: 9.792204e-04	ci right 1.153377e-03	k: 585	n:550000
Cons ci ratio: 7.448935e-03	ci left: 3.336472e-01	ci right 3.361436e-01	k: 184192	n:550000
KS ci ratio: 1.618473e-01	ci left: 9.792204e-04	ci right 1.153377e-03	k: 585	n:550000
CHEK2   550000 perm   190 sec   (2895 perm/sec)   p_kst 1.063636e-03   p_cons 3.348945e-01   p_joint 1.063636e-03

Joint ci ratio: 1.608897e-01	ci left: 9.737293e-04	ci right 1.145785e-03	k: 592	n:560000
Cons ci ratio: 7.382599e-03	ci left: 3.336300e-01	ci right 3.361039e-01	k: 187525	n:560000
KS ci ratio: 1.608897e-01	ci left: 9.737293e-04	ci right 1.145785e-03	k: 592	n:560000
CHEK2   560000 perm   195 sec   (2867 perm/sec)   p_kst 1.057143e-03   p_cons 3.348661e-01   p_joint 1.057143e-03

Joint ci ratio: 1.594179e-01	ci left: 9.751712e-04	ci right 1.145755e-03	k: 603	n:570000
Cons ci ratio: 7.316823e-03	ci left: 3.336853e-01	ci right 3.361375e-01	k: 190899	n:570000
KS ci ratio: 1.594179e-01	ci left: 9.751712e-04	ci right 1.145755e-03	k: 603	n:570000
CHEK2   570000 perm   201 sec   (2840 perm/sec)   p_kst 1.057895e-03   p_cons 3.349105e-01   p_joint 1.057895e-03

Joint ci ratio: 1.574739e-01	ci left: 9.831949e-04	ci right 1.152887e-03	k: 618	n:580000
Cons ci ratio: 7.255414e-03	ci left: 3.335768e-01	ci right 3.360076e-01	k: 194179	n:580000
KS ci ratio: 1.574739e-01	ci left: 9.831949e-04	ci right 1.152887e-03	k: 618	n:580000
CHEK2   580000 perm   206 sec   (2813 perm/sec)   p_kst 1.065517e-03   p_cons 3.347914e-01   p_joint 1.065517e-03

Joint ci ratio: 1.562172e-01	ci left: 9.828145e-04	ci right 1.150960e-03	k: 628	n:590000
Cons ci ratio: 7.196017e-03	ci left: 3.334417e-01	ci right 3.358515e-01	k: 197441	n:590000
KS ci ratio: 1.562172e-01	ci left: 9.828145e-04	ci right 1.150960e-03	k: 628	n:590000
CHEK2   590000 perm   212 sec   (2786 perm/sec)   p_kst 1.064407e-03   p_cons 3.346458e-01   p_joint 1.064407e-03

Joint ci ratio: 1.552335e-01	ci left: 9.792478e-04	ci right 1.145630e-03	k: 636	n:600000
Cons ci ratio: 7.135064e-03	ci left: 3.334976e-01	ci right 3.358873e-01	k: 200815	n:600000
KS ci ratio: 1.552335e-01	ci left: 9.792478e-04	ci right 1.145630e-03	k: 636	n:600000
CHEK2   600000 perm   217 sec   (2760 perm/sec)   p_kst 1.060000e-03   p_cons 3.346917e-01   p_joint 1.060000e-03

Joint ci ratio: 1.041994e-01	ci left: 2.194111e-03	ci right 2.436884e-03	k: 1411	n:610000
Cons ci ratio: 7.076232e-03	ci left: 3.335141e-01	ci right 3.358841e-01	k: 204166	n:610000
KS ci ratio: 1.525031e-01	ci left: 9.994487e-04	ci right 1.166004e-03	k: 659	n:610000
CHEK2   610000 perm   223 sec   (2733 perm/sec)   p_kst 1.080328e-03   p_cons 3.346984e-01   p_joint 2.313115e-03

Joint ci ratio: 1.035419e-01	ci left: 2.187000e-03	ci right 2.427366e-03	k: 1429	n:620000
Cons ci ratio: 7.018603e-03	ci left: 3.335447e-01	ci right 3.358955e-01	k: 207526	n:620000
KS ci ratio: 1.517012e-01	ci left: 9.941889e-04	ci right 1.158917e-03	k: 666	n:620000
CHEK2   620000 perm   229 sec   (2707 perm/sec)   p_kst 1.074194e-03   p_cons 3.347194e-01   p_joint 2.304839e-03

Joint ci ratio: 1.513621e-01	ci left: 9.829891e-04	ci right 1.145465e-03	k: 669	n:630000
Cons ci ratio: 6.962633e-03	ci left: 3.335569e-01	ci right 3.358890e-01	k: 210875	n:630000
KS ci ratio: 1.513621e-01	ci left: 9.829891e-04	ci right 1.145465e-03	k: 669	n:630000
CHEK2   630000 perm   235 sec   (2682 perm/sec)   p_kst 1.061905e-03   p_cons 3.347222e-01   p_joint 1.061905e-03

Joint ci ratio: 1.491513e-01	ci left: 9.977056e-04	ci right 1.159990e-03	k: 689	n:640000
Cons ci ratio: 6.909798e-03	ci left: 3.334518e-01	ci right 3.357654e-01	k: 214149	n:640000
KS ci ratio: 1.491513e-01	ci left: 9.977056e-04	ci right 1.159990e-03	k: 689	n:640000
CHEK2   640000 perm   241 sec   (2657 perm/sec)   p_kst 1.076563e-03   p_cons 3.346078e-01   p_joint 1.076563e-03

Joint ci ratio: 1.478708e-01	ci left: 1.000132e-03	ci right 1.161291e-03	k: 701	n:650000
Cons ci ratio: 6.854879e-03	ci left: 3.335620e-01	ci right 3.358579e-01	k: 217561	n:650000
KS ci ratio: 1.478708e-01	ci left: 1.000132e-03	ci right 1.161291e-03	k: 701	n:650000
CHEK2   650000 perm   247 sec   (2632 perm/sec)   p_kst 1.078462e-03   p_cons 3.347092e-01   p_joint 1.078462e-03

Joint ci ratio: 1.473477e-01	ci left: 9.922740e-04	ci right 1.151551e-03	k: 706	n:660000
Cons ci ratio: 6.803563e-03	ci left: 3.335176e-01	ci right 3.357960e-01	k: 220873	n:660000
KS ci ratio: 1.473477e-01	ci left: 9.922740e-04	ci right 1.151551e-03	k: 706	n:660000
CHEK2   660000 perm   253 sec   (2608 perm/sec)   p_kst 1.069697e-03   p_cons 3.346561e-01   p_joint 1.069697e-03

Joint ci ratio: 1.461128e-01	ci left: 9.947170e-04	ci right 1.152931e-03	k: 718	n:670000
Cons ci ratio: 6.753178e-03	ci left: 3.334880e-01	ci right 3.357492e-01	k: 224194	n:670000
KS ci ratio: 1.461128e-01	ci left: 9.947170e-04	ci right 1.152931e-03	k: 718	n:670000
CHEK2   670000 perm   259 sec   (2586 perm/sec)   p_kst 1.071642e-03   p_cons 3.346179e-01   p_joint 1.071642e-03

Joint ci ratio: 1.457087e-01	ci left: 9.857560e-04	ci right 1.142074e-03	k: 722	n:680000
Cons ci ratio: 6.704560e-03	ci left: 3.334153e-01	ci right 3.356596e-01	k: 227485	n:680000
KS ci ratio: 1.457087e-01	ci left: 9.857560e-04	ci right 1.142074e-03	k: 722	n:680000
CHEK2   680000 perm   265 sec   (2563 perm/sec)   p_kst 1.061765e-03   p_cons 3.345368e-01   p_joint 1.061765e-03

Joint ci ratio: 1.446128e-01	ci left: 9.868328e-04	ci right 1.142043e-03	k: 733	n:690000
Cons ci ratio: 6.655331e-03	ci left: 3.334548e-01	ci right 3.356828e-01	k: 230852	n:690000
KS ci ratio: 1.446128e-01	ci left: 9.868328e-04	ci right 1.142043e-03	k: 733	n:690000
CHEK2   690000 perm   272 sec   (2540 perm/sec)   p_kst 1.062319e-03   p_cons 3.345681e-01   p_joint 1.062319e-03

Joint ci ratio: 1.435411e-01	ci left: 9.878830e-04	ci right 1.142008e-03	k: 744	n:700000
Cons ci ratio: 6.607679e-03	ci left: 3.334589e-01	ci right 3.356710e-01	k: 234195	n:700000
KS ci ratio: 1.435411e-01	ci left: 9.878830e-04	ci right 1.142008e-03	k: 744	n:700000
CHEK2   700000 perm   278 sec   (2517 perm/sec)   p_kst 1.062857e-03   p_cons 3.345643e-01   p_joint 1.062857e-03

Joint ci ratio: 1.419303e-01	ci left: 9.970581e-04	ci right 1.150721e-03	k: 761	n:710000
Cons ci ratio: 6.559438e-03	ci left: 3.335714e-01	ci right 3.357680e-01	k: 237615	n:710000
KS ci ratio: 1.419303e-01	ci left: 9.970581e-04	ci right 1.150721e-03	k: 761	n:710000
CHEK2   710000 perm   284 sec   (2496 perm/sec)   p_kst 1.071831e-03   p_cons 3.346690e-01   p_joint 1.071831e-03

Joint ci ratio: 1.407347e-01	ci left: 1.000627e-03	ci right 1.153432e-03	k: 774	n:720000
Cons ci ratio: 6.511772e-03	ci left: 3.337127e-01	ci right 3.358942e-01	k: 241058	n:720000
KS ci ratio: 1.407347e-01	ci left: 1.000627e-03	ci right 1.153432e-03	k: 774	n:720000
CHEK2   720000 perm   291 sec   (2475 perm/sec)   p_kst 1.075000e-03   p_cons 3.348028e-01   p_joint 1.075000e-03

Joint ci ratio: 1.398355e-01	ci left: 1.000138e-03	ci right 1.151811e-03	k: 784	n:730000
Cons ci ratio: 6.466182e-03	ci left: 3.337776e-01	ci right 3.359442e-01	k: 244448	n:730000
KS ci ratio: 1.398355e-01	ci left: 1.000138e-03	ci right 1.151811e-03	k: 784	n:730000
CHEK2   730000 perm   297 sec   (2454 perm/sec)   p_kst 1.073973e-03   p_cons 3.348603e-01   p_joint 1.073973e-03

Joint ci ratio: 1.392165e-01	ci left: 9.957516e-04	ci right 1.146036e-03	k: 791	n:740000
Cons ci ratio: 6.422511e-03	ci left: 3.337734e-01	ci right 3.359252e-01	k: 247788	n:740000
KS ci ratio: 1.392165e-01	ci left: 9.957516e-04	ci right 1.146036e-03	k: 791	n:740000
CHEK2   740000 perm   304 sec   (2434 perm/sec)   p_kst 1.068919e-03   p_cons 3.348486e-01   p_joint 1.068919e-03

Joint ci ratio: 1.381735e-01	ci left: 9.979198e-04	ci right 1.147310e-03	k: 803	n:750000
Cons ci ratio: 6.380248e-03	ci left: 3.337319e-01	ci right 3.358693e-01	k: 251100	n:750000
KS ci ratio: 1.381735e-01	ci left: 9.979198e-04	ci right 1.147310e-03	k: 803	n:750000
CHEK2   750000 perm   311 sec   (2414 perm/sec)   p_kst 1.070667e-03   p_cons 3.348000e-01   p_joint 1.070667e-03

Joint ci ratio: 9.378611e-02	ci left: 2.185836e-03	ci right 2.402197e-03	k: 1742	n:760000
Cons ci ratio: 6.337909e-03	ci left: 3.337548e-01	ci right 3.358781e-01	k: 254460	n:760000
KS ci ratio: 1.372379e-01	ci left: 9.987644e-04	ci right 1.147186e-03	k: 814	n:760000
CHEK2   760000 perm   317 sec   (2394 perm/sec)   p_kst 1.071053e-03   p_cons 3.348158e-01   p_joint 2.292105e-03

Joint ci ratio: 1.362384e-01	ci left: 1.000845e-03	ci right 1.148405e-03	k: 826	n:770000
Cons ci ratio: 6.296732e-03	ci left: 3.337537e-01	ci right 3.358631e-01	k: 257802	n:770000
KS ci ratio: 1.362384e-01	ci left: 1.000845e-03	ci right 1.148405e-03	k: 826	n:770000
CHEK2   770000 perm   324 sec   (2375 perm/sec)   p_kst 1.072727e-03   p_cons 3.348078e-01   p_joint 1.072727e-03

Joint ci ratio: 1.355033e-01	ci left: 9.991596e-04	ci right 1.145612e-03	k: 835	n:780000
Cons ci ratio: 6.256096e-03	ci left: 3.337706e-01	ci right 3.358665e-01	k: 261158	n:780000
KS ci ratio: 1.355033e-01	ci left: 9.991596e-04	ci right 1.145612e-03	k: 835	n:780000
CHEK2   780000 perm   331 sec   (2354 perm/sec)   p_kst 1.070513e-03   p_cons 3.348179e-01   p_joint 1.070513e-03

Joint ci ratio: 1.340670e-01	ci left: 1.008529e-03	ci right 1.154663e-03	k: 853	n:790000
Cons ci ratio: 6.216449e-03	ci left: 3.337720e-01	ci right 3.358546e-01	k: 264502	n:790000
KS ci ratio: 1.340670e-01	ci left: 1.008529e-03	ci right 1.154663e-03	k: 853	n:790000
CHEK2   790000 perm   338 sec   (2334 perm/sec)   p_kst 1.079747e-03   p_cons 3.348127e-01   p_joint 1.079747e-03

Joint ci ratio: 1.330579e-01	ci left: 1.011629e-03	ci right 1.157022e-03	k: 866	n:800000
Cons ci ratio: 6.177181e-03	ci left: 3.337996e-01	ci right 3.358691e-01	k: 267867	n:800000
KS ci ratio: 1.330579e-01	ci left: 1.011629e-03	ci right 1.157022e-03	k: 866	n:800000
CHEK2   800000 perm   345 sec   (2316 perm/sec)   p_kst 1.082500e-03   p_cons 3.348337e-01   p_joint 1.082500e-03

Joint ci ratio: 1.324485e-01	ci left: 1.008689e-03	ci right 1.152942e-03	k: 874	n:810000
Cons ci ratio: 6.138870e-03	ci left: 3.338105e-01	ci right 3.358672e-01	k: 271219	n:810000
KS ci ratio: 1.324485e-01	ci left: 1.008689e-03	ci right 1.152942e-03	k: 874	n:810000
CHEK2   810000 perm   352 sec   (2298 perm/sec)   p_kst 1.079012e-03   p_cons 3.348383e-01   p_joint 1.079012e-03

Joint ci ratio: 1.314753e-01	ci left: 1.011718e-03	ci right 1.155259e-03	k: 887	n:820000
Cons ci ratio: 6.101881e-03	ci left: 3.337761e-01	ci right 3.358202e-01	k: 274534	n:820000
KS ci ratio: 1.314753e-01	ci left: 1.011718e-03	ci right 1.155259e-03	k: 887	n:820000
CHEK2   820000 perm   360 sec   (2281 perm/sec)   p_kst 1.081707e-03   p_cons 3.347976e-01   p_joint 1.081707e-03

Joint ci ratio: 1.304507e-01	ci left: 1.015844e-03	ci right 1.158759e-03	k: 901	n:830000
Cons ci ratio: 6.064831e-03	ci left: 3.337955e-01	ci right 3.358273e-01	k: 277893	n:830000
KS ci ratio: 1.304507e-01	ci left: 1.015844e-03	ci right 1.158759e-03	k: 901	n:830000
CHEK2   830000 perm   367 sec   (2262 perm/sec)   p_kst 1.085542e-03   p_cons 3.348108e-01   p_joint 1.085542e-03

Joint ci ratio: 1.296625e-01	ci left: 1.016419e-03	ci right 1.158486e-03	k: 912	n:840000
Cons ci ratio: 6.028495e-03	ci left: 3.338110e-01	ci right 3.358306e-01	k: 281249	n:840000
KS ci ratio: 1.296625e-01	ci left: 1.016419e-03	ci right 1.158486e-03	k: 912	n:840000
CHEK2   840000 perm   374 sec   (2245 perm/sec)   p_kst 1.085714e-03   p_cons 3.348202e-01   p_joint 1.085714e-03

Joint ci ratio: 1.289582e-01	ci left: 1.015846e-03	ci right 1.157002e-03	k: 922	n:850000
Cons ci ratio: 5.991808e-03	ci left: 3.339002e-01	ci right 3.359080e-01	k: 284668	n:850000
KS ci ratio: 1.289582e-01	ci left: 1.015846e-03	ci right 1.157002e-03	k: 922	n:850000
CHEK2   850000 perm   381 sec   (2228 perm/sec)   p_kst 1.084706e-03   p_cons 3.349035e-01   p_joint 1.084706e-03

Joint ci ratio: 1.282653e-01	ci left: 1.015287e-03	ci right 1.155550e-03	k: 932	n:860000
Cons ci ratio: 5.956078e-03	ci left: 3.339652e-01	ci right 3.359614e-01	k: 288068	n:860000
KS ci ratio: 1.282653e-01	ci left: 1.015287e-03	ci right 1.155550e-03	k: 932	n:860000
CHEK2   860000 perm   389 sec   (2212 perm/sec)   p_kst 1.083721e-03   p_cons 3.349628e-01   p_joint 1.083721e-03

Joint ci ratio: 1.276513e-01	ci left: 1.013631e-03	ci right 1.152944e-03	k: 941	n:870000
Cons ci ratio: 5.920659e-03	ci left: 3.340530e-01	ci right 3.360378e-01	k: 291489	n:870000
KS ci ratio: 1.276513e-01	ci left: 1.013631e-03	ci right 1.152944e-03	k: 941	n:870000
CHEK2   870000 perm   396 sec   (2196 perm/sec)   p_kst 1.081609e-03   p_cons 3.350448e-01   p_joint 1.081609e-03

Joint ci ratio: 1.268458e-01	ci left: 1.015315e-03	ci right 1.153912e-03	k: 953	n:880000
Cons ci ratio: 5.886194e-03	ci left: 3.341138e-01	ci right 3.360873e-01	k: 294888	n:880000
KS ci ratio: 1.268458e-01	ci left: 1.015315e-03	ci right 1.153912e-03	k: 953	n:880000
CHEK2   880000 perm   404 sec   (2180 perm/sec)   p_kst 1.082955e-03   p_cons 3.351000e-01   p_joint 1.082955e-03

Joint ci ratio: 1.261862e-01	ci left: 1.014787e-03	ci right 1.152538e-03	k: 963	n:890000
Cons ci ratio: 5.853608e-03	ci left: 3.340755e-01	ci right 3.360379e-01	k: 298200	n:890000
KS ci ratio: 1.261862e-01	ci left: 1.014787e-03	ci right 1.152538e-03	k: 963	n:890000
CHEK2   890000 perm   411 sec   (2165 perm/sec)   p_kst 1.082022e-03   p_cons 3.350562e-01   p_joint 1.082022e-03

Joint ci ratio: 1.256661e-01	ci left: 1.012120e-03	ci right 1.148901e-03	k: 971	n:900000
Cons ci ratio: 5.821107e-03	ci left: 3.340726e-01	ci right 3.360240e-01	k: 301543	n:900000
KS ci ratio: 1.256661e-01	ci left: 1.012120e-03	ci right 1.148901e-03	k: 971	n:900000
CHEK2   900000 perm   419 sec   (2149 perm/sec)   p_kst 1.078889e-03   p_cons 3.350478e-01   p_joint 1.078889e-03

Joint ci ratio: 1.250884e-01	ci left: 1.010578e-03	ci right 1.146476e-03	k: 980	n:910000
Cons ci ratio: 5.789670e-03	ci left: 3.340291e-01	ci right 3.359697e-01	k: 304849	n:910000
KS ci ratio: 1.250884e-01	ci left: 1.010578e-03	ci right 1.146476e-03	k: 980	n:910000
CHEK2   910000 perm   426 sec   (2134 perm/sec)   p_kst 1.076923e-03   p_cons 3.349989e-01   p_joint 1.076923e-03

Joint ci ratio: 1.240803e-01	ci left: 1.016443e-03	ci right 1.151947e-03	k: 996	n:920000
Cons ci ratio: 5.756910e-03	ci left: 3.341278e-01	ci right 3.360580e-01	k: 308285	n:920000
KS ci ratio: 1.240803e-01	ci left: 1.016443e-03	ci right 1.151947e-03	k: 996	n:920000
CHEK2   920000 perm   434 sec   (2118 perm/sec)   p_kst 1.082609e-03   p_cons 3.350924e-01   p_joint 1.082609e-03

Joint ci ratio: 1.232790e-01	ci left: 1.019060e-03	ci right 1.153971e-03	k: 1009	n:930000
Cons ci ratio: 5.725709e-03	ci left: 3.341460e-01	ci right 3.360658e-01	k: 311648	n:930000
KS ci ratio: 1.232790e-01	ci left: 1.019060e-03	ci right 1.153971e-03	k: 1009	n:930000
CHEK2   930000 perm   442 sec   (2103 perm/sec)   p_kst 1.084946e-03   p_cons 3.351054e-01   p_joint 1.084946e-03

Joint ci ratio: 8.627318e-02	ci left: 2.096922e-03	ci right 2.287018e-03	k: 2059	n:940000
Cons ci ratio: 5.694533e-03	ci left: 3.342010e-01	ci right 3.361106e-01	k: 315046	n:940000
KS ci ratio: 1.225531e-01	ci left: 1.020592e-03	ci right 1.154853e-03	k: 1021	n:940000
CHEK2   940000 perm   450 sec   (2088 perm/sec)   p_kst 1.086170e-03   p_cons 3.351553e-01   p_joint 2.190426e-03

Joint ci ratio: 1.218398e-01	ci left: 1.022095e-03	ci right 1.155714e-03	k: 1033	n:950000
Cons ci ratio: 5.663902e-03	ci left: 3.342518e-01	ci right 3.361513e-01	k: 318441	n:950000
KS ci ratio: 1.218398e-01	ci left: 1.022095e-03	ci right 1.155714e-03	k: 1033	n:950000
CHEK2   950000 perm   458 sec   (2074 perm/sec)   p_kst 1.087368e-03   p_cons 3.352011e-01   p_joint 1.087368e-03

Joint ci ratio: 1.212549e-01	ci left: 1.021548e-03	ci right 1.154409e-03	k: 1043	n:960000
Cons ci ratio: 5.633641e-03	ci left: 3.343108e-01	ci right 3.362006e-01	k: 321845	n:960000
KS ci ratio: 1.212549e-01	ci left: 1.021548e-03	ci right 1.154409e-03	k: 1043	n:960000
CHEK2   960000 perm   466 sec   (2058 perm/sec)   p_kst 1.086458e-03   p_cons 3.352552e-01   p_joint 1.086458e-03

Joint ci ratio: 1.206211e-01	ci left: 1.022013e-03	ci right 1.154191e-03	k: 1054	n:970000
Cons ci ratio: 5.604715e-03	ci left: 3.343007e-01	ci right 3.361807e-01	k: 325183	n:970000
KS ci ratio: 1.206211e-01	ci left: 1.022013e-03	ci right 1.154191e-03	k: 1054	n:970000
CHEK2   970000 perm   475 sec   (2043 perm/sec)   p_kst 1.086598e-03   p_cons 3.352402e-01   p_joint 1.086598e-03

Joint ci ratio: 8.454665e-02	ci left: 2.096215e-03	ci right 2.282257e-03	k: 2144	n:980000
Cons ci ratio: 5.576536e-03	ci left: 3.342664e-01	ci right 3.361366e-01	k: 328497	n:980000
KS ci ratio: 1.201100e-01	ci left: 1.020492e-03	ci right 1.151873e-03	k: 1063	n:980000
CHEK2   980000 perm   483 sec   (2030 perm/sec)   p_kst 1.084694e-03   p_cons 3.352010e-01   p_joint 2.187755e-03

Joint ci ratio: 1.194383e-01	ci left: 1.021942e-03	ci right 1.152722e-03	k: 1075	n:990000
Cons ci ratio: 5.549697e-03	ci left: 3.341591e-01	ci right 3.360197e-01	k: 331738	n:990000
KS ci ratio: 1.194383e-01	ci left: 1.021942e-03	ci right 1.152722e-03	k: 1075	n:990000
CHEK2   990000 perm   491 sec   (2016 perm/sec)   p_kst 1.085859e-03   p_cons 3.350889e-01   p_joint 1.085859e-03

Joint ci ratio: 1.187231e-01	ci left: 1.024335e-03	ci right 1.154582e-03	k: 1088	n:1000000
Cons ci ratio: 5.522200e-03	ci left: 3.341379e-01	ci right 3.359891e-01	k: 335063	n:1000000
KS ci ratio: 1.187231e-01	ci left: 1.024335e-03	ci right 1.154582e-03	k: 1088	n:1000000
CHEK2   1000000 perm   499 sec   (2003 perm/sec)   p_kst 1.088000e-03   p_cons 3.350630e-01   p_joint 1.088000e-03

Joint ci ratio: 1.181280e-01	ci left: 1.024762e-03	ci right 1.154364e-03	k: 1099	n:1010000
Cons ci ratio: 5.494008e-03	ci left: 3.342061e-01	ci right 3.360483e-01	k: 338478	n:1010000
KS ci ratio: 1.181280e-01	ci left: 1.024762e-03	ci right 1.154364e-03	k: 1099	n:1010000
CHEK2   1010000 perm   508 sec   (1989 perm/sec)   p_kst 1.088119e-03   p_cons 3.351267e-01   p_joint 1.088119e-03

Joint ci ratio: 1.173305e-01	ci left: 1.028988e-03	ci right 1.158186e-03	k: 1114	n:1020000
Cons ci ratio: 5.467062e-03	ci left: 3.342065e-01	ci right 3.360396e-01	k: 341825	n:1020000
KS ci ratio: 1.173305e-01	ci left: 1.028988e-03	ci right 1.158186e-03	k: 1114	n:1020000
CHEK2   1020000 perm   516 sec   (1976 perm/sec)   p_kst 1.092157e-03   p_cons 3.351225e-01   p_joint 1.092157e-03

Joint ci ratio: 1.168079e-01	ci left: 1.028422e-03	ci right 1.156934e-03	k: 1124	n:1030000
Cons ci ratio: 5.441018e-03	ci left: 3.341651e-01	ci right 3.359892e-01	k: 345129	n:1030000
KS ci ratio: 1.168079e-01	ci left: 1.028422e-03	ci right 1.156934e-03	k: 1124	n:1030000
CHEK2   1030000 perm   525 sec   (1963 perm/sec)   p_kst 1.091262e-03   p_cons 3.350767e-01   p_joint 1.091262e-03

Joint ci ratio: 1.164464e-01	ci left: 1.025068e-03	ci right 1.152737e-03	k: 1131	n:1040000
Cons ci ratio: 5.414361e-03	ci left: 3.342053e-01	ci right 3.360206e-01	k: 348517	n:1040000
KS ci ratio: 1.164464e-01	ci left: 1.025068e-03	ci right 1.152737e-03	k: 1131	n:1040000
CHEK2   1040000 perm   533 sec   (1950 perm/sec)   p_kst 1.087500e-03   p_cons 3.351125e-01   p_joint 1.087500e-03

Joint ci ratio: 1.157834e-01	ci left: 1.027327e-03	ci right 1.154499e-03	k: 1144	n:1050000
Cons ci ratio: 5.388518e-03	ci left: 3.342095e-01	ci right 3.360162e-01	k: 351868	n:1050000
KS ci ratio: 1.157834e-01	ci left: 1.027327e-03	ci right 1.154499e-03	k: 1144	n:1050000
CHEK2   1050000 perm   542 sec   (1937 perm/sec)   p_kst 1.089524e-03   p_cons 3.351124e-01   p_joint 1.089524e-03

Joint ci ratio: 1.152312e-01	ci left: 1.027713e-03	ci right 1.154284e-03	k: 1155	n:1060000
Cons ci ratio: 5.362985e-03	ci left: 3.342184e-01	ci right 3.360165e-01	k: 355224	n:1060000
KS ci ratio: 1.152312e-01	ci left: 1.027713e-03	ci right 1.154284e-03	k: 1155	n:1060000
CHEK2   1060000 perm   551 sec   (1925 perm/sec)   p_kst 1.089623e-03   p_cons 3.351170e-01   p_joint 1.089623e-03

Joint ci ratio: 1.146377e-01	ci left: 1.029000e-03	ci right 1.155034e-03	k: 1167	n:1070000
Cons ci ratio: 5.338596e-03	ci left: 3.341617e-01	ci right 3.359513e-01	k: 358510	n:1070000
KS ci ratio: 1.146377e-01	ci left: 1.029000e-03	ci right 1.155034e-03	k: 1167	n:1070000
CHEK2   1070000 perm   560 sec   (1911 perm/sec)   p_kst 1.090654e-03   p_cons 3.350561e-01   p_joint 1.090654e-03

Joint ci ratio: 1.141501e-01	ci left: 1.028467e-03	ci right 1.153863e-03	k: 1177	n:1080000
Cons ci ratio: 5.313718e-03	ci left: 3.341746e-01	ci right 3.359559e-01	k: 361870	n:1080000
KS ci ratio: 1.141501e-01	ci left: 1.028467e-03	ci right 1.153863e-03	k: 1177	n:1080000
CHEK2   1080000 perm   569 sec   (1899 perm/sec)   p_kst 1.089815e-03   p_cons 3.350648e-01   p_joint 1.089815e-03

Joint ci ratio: 1.136687e-01	ci left: 1.027944e-03	ci right 1.152713e-03	k: 1187	n:1090000
Cons ci ratio: 5.289207e-03	ci left: 3.341854e-01	ci right 3.359586e-01	k: 365228	n:1090000
KS ci ratio: 1.136687e-01	ci left: 1.027944e-03	ci right 1.152713e-03	k: 1187	n:1090000
CHEK2   1090000 perm   577 sec   (1888 perm/sec)   p_kst 1.088991e-03   p_cons 3.350716e-01   p_joint 1.088991e-03

Joint ci ratio: 1.130989e-01	ci left: 1.029199e-03	ci right 1.153452e-03	k: 1199	n:1100000
Cons ci ratio: 5.264646e-03	ci left: 3.342288e-01	ci right 3.359939e-01	k: 368622	n:1100000
KS ci ratio: 1.130989e-01	ci left: 1.029199e-03	ci right 1.153452e-03	k: 1199	n:1100000
CHEK2   1100000 perm   586 sec   (1876 perm/sec)   p_kst 1.090000e-03   p_cons 3.351109e-01   p_joint 1.090000e-03

Joint ci ratio: 1.127239e-01	ci left: 1.026931e-03	ci right 1.150471e-03	k: 1207	n:1110000
Cons ci ratio: 5.242098e-03	ci left: 3.341291e-01	ci right 3.358861e-01	k: 371858	n:1110000
KS ci ratio: 1.127239e-01	ci left: 1.026931e-03	ci right 1.150471e-03	k: 1207	n:1110000
CHEK2   1110000 perm   595 sec   (1864 perm/sec)   p_kst 1.087387e-03   p_cons 3.350072e-01   p_joint 1.087387e-03

Joint ci ratio: 1.124452e-01	ci left: 1.022968e-03	ci right 1.145707e-03	k: 1213	n:1120000
Cons ci ratio: 5.218110e-03	ci left: 3.341785e-01	ci right 3.359277e-01	k: 375259	n:1120000
KS ci ratio: 1.124452e-01	ci left: 1.022968e-03	ci right 1.145707e-03	k: 1213	n:1120000
CHEK2   1120000 perm   604 sec   (1853 perm/sec)   p_kst 1.083036e-03   p_cons 3.350527e-01   p_joint 1.083036e-03

Joint ci ratio: 1.118023e-01	ci left: 1.025957e-03	ci right 1.148305e-03	k: 1227	n:1130000
Cons ci ratio: 5.194924e-03	ci left: 3.341863e-01	ci right 3.359278e-01	k: 378614	n:1130000
KS ci ratio: 1.118023e-01	ci left: 1.025957e-03	ci right 1.148305e-03	k: 1227	n:1130000
CHEK2   1130000 perm   614 sec   (1841 perm/sec)   p_kst 1.085841e-03   p_cons 3.350566e-01   p_joint 1.085841e-03

Joint ci ratio: 1.111254e-01	ci left: 1.029749e-03	ci right 1.151756e-03	k: 1242	n:1140000
Cons ci ratio: 5.172003e-03	ci left: 3.341976e-01	ci right 3.359314e-01	k: 381973	n:1140000
KS ci ratio: 1.111254e-01	ci left: 1.029749e-03	ci right 1.151756e-03	k: 1242	n:1140000
CHEK2   1140000 perm   623 sec   (1829 perm/sec)   p_kst 1.089474e-03   p_cons 3.350640e-01   p_joint 1.089474e-03

Joint ci ratio: 1.105487e-01	ci left: 1.031785e-03	ci right 1.153359e-03	k: 1255	n:1150000
Cons ci ratio: 5.148519e-03	ci left: 3.342833e-01	ci right 3.360097e-01	k: 385418	n:1150000
KS ci ratio: 1.105487e-01	ci left: 1.031785e-03	ci right 1.153359e-03	k: 1255	n:1150000
CHEK2   1150000 perm   633 sec   (1818 perm/sec)   p_kst 1.091304e-03   p_cons 3.351461e-01   p_joint 1.091304e-03

Joint ci ratio: 1.101985e-01	ci left: 1.029597e-03	ci right 1.150503e-03	k: 1263	n:1160000
Cons ci ratio: 5.126502e-03	ci left: 3.342677e-01	ci right 3.359866e-01	k: 388747	n:1160000
KS ci ratio: 1.101985e-01	ci left: 1.029597e-03	ci right 1.150503e-03	k: 1263	n:1160000
CHEK2   1160000 perm   642 sec   (1806 perm/sec)   p_kst 1.088793e-03   p_cons 3.351267e-01   p_joint 1.088793e-03

Joint ci ratio: 1.095502e-01	ci left: 1.033265e-03	ci right 1.153842e-03	k: 1278	n:1170000
Cons ci ratio: 5.104315e-03	ci left: 3.342917e-01	ci right 3.360032e-01	k: 392122	n:1170000
KS ci ratio: 1.095502e-01	ci left: 1.033265e-03	ci right 1.153842e-03	k: 1278	n:1170000
CHEK2   1170000 perm   652 sec   (1794 perm/sec)   p_kst 1.092308e-03   p_cons 3.351470e-01   p_joint 1.092308e-03

Joint ci ratio: 1.090398e-01	ci left: 1.034400e-03	ci right 1.154511e-03	k: 1290	n:1180000
Cons ci ratio: 5.082249e-03	ci left: 3.343296e-01	ci right 3.360339e-01	k: 395514	n:1180000
KS ci ratio: 1.090398e-01	ci left: 1.034400e-03	ci right 1.154511e-03	k: 1290	n:1180000
CHEK2   1180000 perm   662 sec   (1783 perm/sec)   p_kst 1.093220e-03   p_cons 3.351814e-01   p_joint 1.093220e-03

Joint ci ratio: 1.085365e-01	ci left: 1.035517e-03	ci right 1.155168e-03	k: 1302	n:1190000
Cons ci ratio: 5.060762e-03	ci left: 3.343409e-01	ci right 3.360380e-01	k: 398875	n:1190000
KS ci ratio: 1.085365e-01	ci left: 1.035517e-03	ci right 1.155168e-03	k: 1302	n:1190000
CHEK2   1190000 perm   671 sec   (1772 perm/sec)   p_kst 1.094118e-03   p_cons 3.351891e-01   p_joint 1.094118e-03

Joint ci ratio: 1.079169e-01	ci left: 1.039050e-03	ci right 1.158379e-03	k: 1317	n:1200000
Cons ci ratio: 5.039159e-03	ci left: 3.343862e-01	ci right 3.360763e-01	k: 402277	n:1200000
KS ci ratio: 1.079169e-01	ci left: 1.039050e-03	ci right 1.158379e-03	k: 1317	n:1200000
CHEK2   1200000 perm   681 sec   (1762 perm/sec)   p_kst 1.097500e-03   p_cons 3.352308e-01   p_joint 1.097500e-03

Joint ci ratio: 1.073885e-01	ci left: 1.040917e-03	ci right 1.159839e-03	k: 1330	n:1210000
Cons ci ratio: 5.018045e-03	ci left: 3.344117e-01	ci right 3.360948e-01	k: 405656	n:1210000
KS ci ratio: 1.073885e-01	ci left: 1.040917e-03	ci right 1.159839e-03	k: 1330	n:1210000
CHEK2   1210000 perm   691 sec   (1751 perm/sec)   p_kst 1.099174e-03   p_cons 3.352529e-01   p_joint 1.099174e-03

Joint ci ratio: 1.068678e-01	ci left: 1.042755e-03	ci right 1.161273e-03	k: 1343	n:1220000
Cons ci ratio: 4.998315e-03	ci left: 3.343369e-01	ci right 3.360130e-01	k: 408913	n:1220000
KS ci ratio: 1.068678e-01	ci left: 1.042755e-03	ci right 1.161273e-03	k: 1343	n:1220000
CHEK2   1220000 perm   701 sec   (1741 perm/sec)   p_kst 1.100820e-03   p_cons 3.351746e-01   p_joint 1.100820e-03

Joint ci ratio: 1.065908e-01	ci left: 1.039817e-03	ci right 1.157675e-03	k: 1350	n:1230000
Cons ci ratio: 4.978634e-03	ci left: 3.342796e-01	ci right 3.359488e-01	k: 412190	n:1230000
KS ci ratio: 1.065908e-01	ci left: 1.039817e-03	ci right 1.157675e-03	k: 1350	n:1230000
CHEK2   1230000 perm   711 sec   (1730 perm/sec)   p_kst 1.097561e-03   p_cons 3.351138e-01   p_joint 1.097561e-03

Joint ci ratio: 1.061595e-01	ci left: 1.040066e-03	ci right 1.157446e-03	k: 1361	n:1240000
Cons ci ratio: 4.958232e-03	ci left: 3.343087e-01	ci right 3.359711e-01	k: 415573	n:1240000
KS ci ratio: 1.061595e-01	ci left: 1.040066e-03	ci right 1.157446e-03	k: 1361	n:1240000
CHEK2   1240000 perm   721 sec   (1720 perm/sec)   p_kst 1.097581e-03   p_cons 3.351395e-01   p_joint 1.097581e-03

Joint ci ratio: 1.059266e-01	ci left: 1.036418e-03	ci right 1.153113e-03	k: 1367	n:1250000
Cons ci ratio: 4.938904e-03	ci left: 3.342629e-01	ci right 3.359187e-01	k: 418863	n:1250000
KS ci ratio: 1.059266e-01	ci left: 1.036418e-03	ci right 1.153113e-03	k: 1367	n:1250000
CHEK2   1250000 perm   731 sec   (1710 perm/sec)   p_kst 1.093600e-03   p_cons 3.350904e-01   p_joint 1.093600e-03

Joint ci ratio: 1.054650e-01	ci left: 1.037465e-03	ci right 1.153737e-03	k: 1379	n:1260000
Cons ci ratio: 4.918722e-03	ci left: 3.343154e-01	ci right 3.359647e-01	k: 422276	n:1260000
KS ci ratio: 1.054650e-01	ci left: 1.037465e-03	ci right 1.153737e-03	k: 1379	n:1260000
CHEK2   1260000 perm   741 sec   (1700 perm/sec)   p_kst 1.094444e-03   p_cons 3.351397e-01   p_joint 1.094444e-03

Joint ci ratio: 1.050850e-01	ci left: 1.036962e-03	ci right 1.152734e-03	k: 1389	n:1270000
Cons ci ratio: 4.898907e-03	ci left: 3.343562e-01	ci right 3.359989e-01	k: 425675	n:1270000
KS ci ratio: 1.050850e-01	ci left: 1.036962e-03	ci right 1.152734e-03	k: 1389	n:1270000
CHEK2   1270000 perm   752 sec   (1690 perm/sec)   p_kst 1.093701e-03   p_cons 3.351772e-01   p_joint 1.093701e-03

Joint ci ratio: 1.044480e-01	ci left: 1.041794e-03	ci right 1.157357e-03	k: 1406	n:1280000
Cons ci ratio: 4.879132e-03	ci left: 3.344142e-01	ci right 3.360506e-01	k: 429097	n:1280000
KS ci ratio: 1.044480e-01	ci left: 1.041794e-03	ci right 1.157357e-03	k: 1406	n:1280000
CHEK2   1280000 perm   762 sec   (1680 perm/sec)   p_kst 1.098438e-03   p_cons 3.352320e-01   p_joint 1.098438e-03

Joint ci ratio: 1.039687e-01	ci left: 1.043533e-03	ci right 1.158725e-03	k: 1419	n:1290000
Cons ci ratio: 4.860517e-03	ci left: 3.343869e-01	ci right 3.360169e-01	k: 432410	n:1290000
KS ci ratio: 1.039687e-01	ci left: 1.043533e-03	ci right 1.158725e-03	k: 1419	n:1290000
CHEK2   1290000 perm   772 sec   (1670 perm/sec)   p_kst 1.100000e-03   p_cons 3.352016e-01   p_joint 1.100000e-03

Joint ci ratio: 1.033516e-01	ci left: 1.048244e-03	ci right 1.163228e-03	k: 1436	n:1300000
Cons ci ratio: 4.841954e-03	ci left: 3.343747e-01	ci right 3.359984e-01	k: 435742	n:1300000
KS ci ratio: 1.033516e-01	ci left: 1.048244e-03	ci right 1.163228e-03	k: 1436	n:1300000
CHEK2   1300000 perm   783 sec   (1661 perm/sec)   p_kst 1.104615e-03   p_cons 3.351862e-01   p_joint 1.104615e-03

Joint ci ratio: 1.029228e-01	ci left: 1.049166e-03	ci right 1.163745e-03	k: 1448	n:1310000
Cons ci ratio: 4.823750e-03	ci left: 3.343489e-01	ci right 3.359663e-01	k: 439056	n:1310000
KS ci ratio: 1.029228e-01	ci left: 1.049166e-03	ci right 1.163745e-03	k: 1448	n:1310000
CHEK2   1310000 perm   793 sec   (1652 perm/sec)   p_kst 1.105344e-03   p_cons 3.351573e-01   p_joint 1.105344e-03

Joint ci ratio: 1.025695e-01	ci left: 1.048599e-03	ci right 1.162699e-03	k: 1458	n:1320000
Cons ci ratio: 4.805244e-03	ci left: 3.343705e-01	ci right 3.359818e-01	k: 442432	n:1320000
KS ci ratio: 1.025695e-01	ci left: 1.048599e-03	ci right 1.162699e-03	k: 1458	n:1320000
CHEK2   1320000 perm   804 sec   (1642 perm/sec)   p_kst 1.104545e-03   p_cons 3.351758e-01   p_joint 1.104545e-03

Joint ci ratio: 1.021850e-01	ci left: 1.048774e-03	ci right 1.162439e-03	k: 1469	n:1330000
Cons ci ratio: 4.787079e-03	ci left: 3.343797e-01	ci right 3.359849e-01	k: 445792	n:1330000
KS ci ratio: 1.021850e-01	ci left: 1.048774e-03	ci right 1.162439e-03	k: 1469	n:1330000
CHEK2   1330000 perm   815 sec   (1632 perm/sec)   p_kst 1.104511e-03   p_cons 3.351820e-01   p_joint 1.104511e-03

Joint ci ratio: 1.017704e-01	ci left: 1.049674e-03	ci right 1.162948e-03	k: 1481	n:1340000
Cons ci ratio: 4.768727e-03	ci left: 3.344253e-01	ci right 3.360246e-01	k: 449201	n:1340000
KS ci ratio: 1.017704e-01	ci left: 1.049674e-03	ci right 1.162948e-03	k: 1481	n:1340000
CHEK2   1340000 perm   826 sec   (1623 perm/sec)   p_kst 1.105224e-03   p_cons 3.352246e-01   p_joint 1.105224e-03

Joint ci ratio: 1.014629e-01	ci left: 1.048396e-03	ci right 1.161169e-03	k: 1490	n:1350000
Cons ci ratio: 4.750395e-03	ci left: 3.344881e-01	ci right 3.360815e-01	k: 452634	n:1350000
KS ci ratio: 1.014629e-01	ci left: 1.048396e-03	ci right 1.161169e-03	k: 1490	n:1350000
CHEK2   1350000 perm   836 sec   (1614 perm/sec)   p_kst 1.103704e-03   p_cons 3.352844e-01   p_joint 1.103704e-03

Joint ci ratio: 1.009562e-01	ci left: 1.051438e-03	ci right 1.163940e-03	k: 1505	n:1360000
Cons ci ratio: 4.732748e-03	ci left: 3.345051e-01	ci right 3.360927e-01	k: 456006	n:1360000
KS ci ratio: 1.009562e-01	ci left: 1.051438e-03	ci right 1.163940e-03	k: 1505	n:1360000
CHEK2   1360000 perm   847 sec   (1605 perm/sec)   p_kst 1.106618e-03   p_cons 3.352985e-01   p_joint 1.106618e-03

Joint ci ratio: 1.007892e-01	ci left: 1.047320e-03	ci right 1.159186e-03	k: 1510	n:1370000
Cons ci ratio: 4.715953e-03	ci left: 3.344598e-01	ci right 3.360416e-01	k: 459293	n:1370000
KS ci ratio: 1.007892e-01	ci left: 1.047320e-03	ci right 1.159186e-03	k: 1510	n:1370000
CHEK2   1370000 perm   858 sec   (1596 perm/sec)   p_kst 1.102190e-03   p_cons 3.352504e-01   p_joint 1.102190e-03

Joint ci ratio: 1.004574e-01	ci left: 1.046795e-03	ci right 1.158214e-03	k: 1520	n:1380000
Cons ci ratio: 4.698366e-03	ci left: 3.345073e-01	ci right 3.360833e-01	k: 462707	n:1380000
KS ci ratio: 1.004574e-01	ci left: 1.046795e-03	ci right 1.158214e-03	k: 1520	n:1380000
CHEK2   1380000 perm   869 sec   (1588 perm/sec)   p_kst 1.101449e-03   p_cons 3.352949e-01   p_joint 1.101449e-03

Joint ci ratio: 1.000634e-01	ci left: 1.047681e-03	ci right 1.158731e-03	k: 1532	n:1390000
Cons ci ratio: 4.681359e-03	ci left: 3.345173e-01	ci right 3.360877e-01	k: 466070	n:1390000
KS ci ratio: 1.000634e-01	ci left: 1.047681e-03	ci right 1.158731e-03	k: 1532	n:1390000
CHEK2   1390000 perm   880 sec   (1579 perm/sec)   p_kst 1.102158e-03   p_cons 3.353022e-01   p_joint 1.102158e-03

Joint ci ratio: 9.973865e-02	ci left: 1.047162e-03	ci right 1.157776e-03	k: 1542	n:1400000
Cons ci ratio: 4.664774e-03	ci left: 3.345044e-01	ci right 3.360691e-01	k: 469401	n:1400000
KS ci ratio: 9.973865e-02	ci left: 1.047162e-03	ci right 1.157776e-03	k: 1542	n:1400000
CHEK2   1400000 perm   891 sec   (1571 perm/sec)   p_kst 1.101429e-03   p_cons 3.352864e-01   p_joint 1.101429e-03

Outputting figure to mutsig2_images.part000000000037/CHEK2.2_1821_1400000_0.0011014_0.33529_0.0011014.png
                gene_name: CHEK2
               theta_stop: 0.100 
                    nperm: 1400000 
                     p_ks: 0.0011 
        ci_ks_bounds_left: 0.0010 
       ci_ks_bounds_right: 0.0012 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.0011 
     ci_joint_bounds_left: 0.0010 
    ci_joint_bounds_right: 0.0012 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000037
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 37 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1706>
Subject: Job 9877015: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1706>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000038> was used as the working directory.
Started at Fri Oct  5 22:34:56 2012
Results reported at Fri Oct  5 22:36:45 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000038.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000038.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 38  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000038.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     95.41 sec.
    Max Memory :      1756 MB
    Max Swap   :      4545 MB

    Max Processes  :         7
    Max Threads    :        55

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
38
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 38
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 38: processing genes 3356 - 3445
Calculating significance of each gene.
Using projection method.
3356	CHRNB1	1
3357	CHRNB2	1
3358	CHRNB3	1
3359	CHRNB4	1
3360	CHRND	1.146213e-01
3361	CHRNE	1
3362	CHRNG	1
3363	CHST1	1
3364	CHST10	1
3365	CHST11	1
3366	CHST12	1
3367	CHST13	1
3368	CHST14	1
3369	CHST15	1
3370	CHST2	1
3371	CHST3	1
3372	CHST4	1
3373	CHST5	1
3374	CHST6	1
3375	CHST7	1
3376	CHST8	1.198968e-01
3377	CHST9	1
3378	CHSY1	1
3379	CHSY3	1
3380	CHTF18	1
3381	CHTF8	1
3382	CHUK	2.019353e-01
3383	CHURC1	1
3384	CIAO1	1
3385	CIAPIN1	1
3386	CIB1	1
3387	CIB2	1
3388	CIB3	1
3389	CIB4	1
3390	CIC	1
3391	CIDEA	1
3392	CIDEB	1
3393	CIDEC	1
3394	CIITA	1
3395	CILP	1.723809e-02
3396	CILP2	1
3397	CINP	1
3398	CIR1	1
3399	CIRBP	1
3400	CIRH1A	1
3401	CISD1	1
3402	CISD2	1
3403	CISH	1
3404	CIT	1
3405	CITED1	1
3406	CITED2	1
3407	CIZ1	1
3408	CKAP2	1
3409	CKAP2L	1
3410	CKAP4	1
3411	CKAP5	1
3412	CKB	9.832525e-02
3413	CKLF	1
3414	CKM	1.040567e-01
3415	CKMT1A	1
3416	CKMT1B	1
3417	CKMT2	1
3418	CKS1B	1
3419	CKS2	1
3420	CLASP1	1
3421	CLASP2	2.902442e-01
3422	CLC	1
3423	CLCA1	1
3424	CLCA2	1
3425	CLCA4	1
3426	CLCC1	1
3427	CLCF1	1
3428	CLCN1	2.976848e-01
3429	CLCN2	1
3430	CLCN3	1
3431	CLCN4	1
3432	CLCN5	1
3433	CLCN6	1
3434	CLCN7	1
3435	CLCNKA	1
3436	CLCNKB	1
3437	CLDN1	1
3438	CLDN10	1
3439	CLDN11	1
3440	CLDN12	6.198017e-02
3441	CLDN14	1
3442	CLDN15	1
3443	CLDN16	1
3444	CLDN17	1
3445	CLDN18	1
Done

Running MutSig 2:
Scatter job 38: processing genes 3356 - 3445
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CILP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.015053e-02	ci left: 2.890454e-01	ci right 3.070724e-01	k: 2980	n:10000
Cons ci ratio: 1.540616e-01	ci left: 5.609849e-02	ci right 6.555935e-02	k: 607	n:10000
KS ci ratio: 2.944204e-02	ci left: 6.297987e-01	ci right 6.487201e-01	k: 6393	n:10000
CILP   10000 perm   2 sec   (4857 perm/sec)   p_kst 6.393000e-01   p_cons 6.070000e-02   p_joint 2.980000e-01

Joint ci ratio: 6.226385e-02	ci left: 1.602253e-01	ci right 1.705721e-01	k: 3307	n:20000
Cons ci ratio: 1.074430e-01	ci left: 5.903783e-02	ci right 6.579008e-02	k: 1247	n:20000
KS ci ratio: 2.126409e-02	ci left: 6.227635e-01	ci right 6.361988e-01	k: 12590	n:20000
CILP   20000 perm   8 sec   (2617 perm/sec)   p_kst 6.295000e-01   p_cons 6.235000e-02   p_joint 1.653500e-01

Joint ci ratio: 3.833086e-02	ci left: 2.535196e-01	ci right 2.634606e-01	k: 7754	n:30000
Cons ci ratio: 8.693766e-02	ci left: 6.070091e-02	ci right 6.625067e-02	k: 1903	n:30000
KS ci ratio: 1.738963e-02	ci left: 6.232707e-01	ci right 6.342377e-01	k: 18863	n:30000
CILP   30000 perm   10 sec   (2962 perm/sec)   p_kst 6.287667e-01   p_cons 6.343333e-02   p_joint 2.584667e-01

Outputting figure to mutsig2_images.part000000000038/CILP.2_3587_30000_0.62877_0.063433_0.25847.png
                gene_name: CILP
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.063 
      ci_cons_bounds_left: 0.061 
     ci_cons_bounds_right: 0.066 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000038
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 38 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1646>
Subject: Job 9877018: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1646>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000039> was used as the working directory.
Started at Fri Oct  5 22:35:13 2012
Results reported at Sat Oct  6 01:44:12 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000039.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000039.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 39  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000039.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  11440.96 sec.
    Max Memory :      2203 MB
    Max Swap   :      4753 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
39
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 39
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 39: processing genes 3446 - 3536
Calculating significance of each gene.
Using projection method.
3446	CLDN19	1
3447	CLDN2	1
3448	CLDN20	1
3449	CLDN22	1
3450	CLDN23	1
3451	CLDN25	1
3452	CLDN3	1
3453	CLDN4	1
3454	CLDN5	1
3455	CLDN6	1
3456	CLDN7	7.130050e-02
3457	CLDN8	1
3458	CLDN9	7.902709e-02
3459	CLDND1	1
3460	CLDND2	1
3461	CLEC10A	1
3462	CLEC11A	1
3463	CLEC12A	1
3464	CLEC12B	1
3465	CLEC14A	1.258409e-01
3466	CLEC16A	1
3467	CLEC17A	1
3468	CLEC18A	1
3469	CLEC18B	4.655326e-02
3470	CLEC18C	1
3471	CLEC1A	3.133116e-03
3472	CLEC1B	1
3473	CLEC2B	1
3474	CLEC2D	5.584171e-02
3475	CLEC2L	1
3476	CLEC3A	1
3477	CLEC3B	1
3478	CLEC4A	1
3479	CLEC4C	1
3480	CLEC4D	1
3481	CLEC4E	1
3482	CLEC4F	1
3483	CLEC4G	1
3484	CLEC4M	4.811671e-02
3485	CLEC5A	1
3486	CLEC6A	1
3487	CLEC7A	1
3488	CLEC9A	1
3489	CLECL1	1
3490	CLGN	4.196641e-03
3491	CLIC1	1
3492	CLIC2	6.240588e-02
3493	CLIC3	1
3494	CLIC4	1
3495	CLIC5	1
3496	CLIC6	1
3497	CLINT1	1
In gene CLIP1 the following bins exceed PROBCAP:
    PRAD-CH-5765	categ 6	N = 4362    n = 1	mu =   3.34e-07
3498	CLIP1	2.144370e-01
3499	CLIP2	1
3500	CLIP3	1.330764e-01
3501	CLIP4	1.176585e-01
3502	CLK1	1
3503	CLK2	1
3504	CLK3	5.967054e-03
3505	CLK4	1
3506	CLLU1	1
3507	CLLU1OS	1
3508	CLMN	1.418614e-02
3509	CLN3	1
3510	CLN5	1
3511	CLN6	1
3512	CLN8	1
3513	CLNK	1
3514	CLNS1A	1
3515	CLOCK	1
3516	CLP1	1
3517	CLPB	1
3518	CLPP	1
3519	CLPS	1
3520	CLPTM1	2.610627e-01
3521	CLPTM1L	1
3522	CLPX	1
3523	CLRN1	1
3524	CLRN2	1
3525	CLRN3	1
3526	CLSPN	1
3527	CLSTN1	8.413060e-03
3528	CLSTN2	1.656366e-01
3529	CLSTN3	1
3530	CLTA	1
3531	CLTB	1
3532	CLTC	2.609090e-01
3533	CLTCL1	1
3534	CLU	1
3535	CLUAP1	1
3536	CLUL1	1
Done

Running MutSig 2:
Scatter job 39: processing genes 3446 - 3536
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CLGN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.869635e-02	ci left: 1.561040e-01	ci right 1.706926e-01	k: 1633	n:10000
Cons ci ratio: 5.321015e-02	ci left: 3.423355e-01	ci right 3.611510e-01	k: 3517	n:10000
KS ci ratio: 1.077377e-01	ci left: 1.105672e-01	ci right 1.232569e-01	k: 1168	n:10000
CLGN   10000 perm   2 sec   (5068 perm/sec)   p_kst 1.168000e-01   p_cons 3.517000e-01   p_joint 1.633000e-01

Joint ci ratio: 6.263858e-02	ci left: 1.585963e-01	ci right 1.689017e-01	k: 3274	n:20000
Cons ci ratio: 3.774095e-02	ci left: 3.437353e-01	ci right 3.570082e-01	k: 7007	n:20000
KS ci ratio: 7.581674e-02	ci left: 1.134122e-01	ci right 1.223992e-01	k: 2357	n:20000
CLGN   20000 perm   7 sec   (2750 perm/sec)   p_kst 1.178500e-01   p_cons 3.503500e-01   p_joint 1.637000e-01

Outputting figure to mutsig2_images.part000000000039/CLGN.3_1889_20000_0.11785_0.35035_0.1637.png
                gene_name: CLGN
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 20 percent done.
CLSTN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 1.566850e-01	ci left: 5.426821e-02	ci right 6.359080e-02	k: 588	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
CLSTN1   10000 perm   2 sec   (5563 perm/sec)   p_kst 1.000000e-04   p_cons 5.880000e-02   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 1.150598e-01	ci left: 5.168573e-02	ci right 5.804447e-02	k: 1096	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
CLSTN1   20000 perm   4 sec   (4927 perm/sec)   p_kst 5.000000e-05   p_cons 5.480000e-02   p_joint 0

Joint ci ratio: 6.622033e-01	ci left: 7.849900e-04	ci right 1.583363e-03	k: 34	n:30000
Cons ci ratio: 8.902807e-02	ci left: 5.799134e-02	ci right 6.342745e-02	k: 1820	n:30000
KS ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
CLSTN1   30000 perm   7 sec   (4577 perm/sec)   p_kst 3.333333e-05   p_cons 6.066667e-02   p_joint 1.133333e-03

Joint ci ratio: 7.154134e-01	ci left: 4.855960e-04	ci right 1.041056e-03	k: 29	n:40000
Cons ci ratio: 7.725339e-02	ci left: 5.813399e-02	ci right 6.283007e-02	k: 2418	n:40000
KS ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
CLSTN1   40000 perm   9 sec   (4462 perm/sec)   p_kst 2.500000e-05   p_cons 6.045000e-02   p_joint 7.250000e-04

Joint ci ratio: 7.999666e-01	ci left: 2.916222e-04	ci right 6.901464e-04	k: 23	n:50000
Cons ci ratio: 6.962304e-02	ci left: 5.754050e-02	ci right 6.171081e-02	k: 2980	n:50000
KS ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
CLSTN1   50000 perm   12 sec   (4339 perm/sec)   p_kst 2.000000e-05   p_cons 5.960000e-02   p_joint 4.600000e-04

Joint ci ratio: 7.277437e-01	ci left: 3.101183e-04	ci right 6.743932e-04	k: 28	n:60000
Cons ci ratio: 6.348337e-02	ci left: 5.785003e-02	ci right 6.165936e-02	k: 3584	n:60000
KS ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
CLSTN1   60000 perm   14 sec   (4227 perm/sec)   p_kst 1.666667e-05   p_cons 5.973333e-02   p_joint 4.666667e-04

Joint ci ratio: 1.047552e+00	ci left: 9.888862e-05	ci right 3.175561e-04	k: 13	n:70000
Cons ci ratio: 5.861419e-02	ci left: 5.829409e-02	ci right 6.182820e-02	k: 4203	n:70000
KS ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
CLSTN1   70000 perm   17 sec   (4136 perm/sec)   p_kst 1.428571e-05   p_cons 6.004286e-02   p_joint 1.857143e-04

Joint ci ratio: 1.239528e+00	ci left: 5.144341e-05	ci right 2.135493e-04	k: 9	n:80000
Cons ci ratio: 5.502731e-02	ci left: 5.800623e-02	ci right 6.130079e-02	k: 4771	n:80000
KS ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
CLSTN1   80000 perm   20 sec   (4047 perm/sec)   p_kst 1.250000e-05   p_cons 5.963750e-02   p_joint 1.125000e-04

Joint ci ratio: 1.131525e+00	ci left: 6.101442e-05	ci right 2.186788e-04	k: 11	n:90000
Cons ci ratio: 5.189827e-02	ci left: 5.806196e-02	ci right 6.116650e-02	k: 5364	n:90000
KS ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
CLSTN1   90000 perm   23 sec   (3986 perm/sec)   p_kst 1.111111e-05   p_cons 5.960000e-02   p_joint 1.222222e-04

Joint ci ratio: 1.481561e+00	ci left: 2.201925e-05	ci right 1.305901e-04	k: 6	n:100000
Cons ci ratio: 4.932799e-02	ci left: 5.793289e-02	ci right 6.087273e-02	k: 5939	n:100000
KS ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
CLSTN1   100000 perm   26 sec   (3910 perm/sec)   p_kst 1.000000e-05   p_cons 5.939000e-02   p_joint 6.000000e-05

Joint ci ratio: 1.481567e+00	ci left: 2.001748e-05	ci right 1.187187e-04	k: 6	n:110000
Cons ci ratio: 4.718616e-02	ci left: 5.764164e-02	ci right 6.043621e-02	k: 6493	n:110000
KS ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
CLSTN1   110000 perm   29 sec   (3842 perm/sec)   p_kst 9.090909e-06   p_cons 5.902727e-02   p_joint 5.454545e-05

Joint ci ratio: 1.481571e+00	ci left: 1.834933e-05	ci right 1.088257e-04	k: 6	n:120000
Cons ci ratio: 4.518533e-02	ci left: 5.768160e-02	ci right 6.035643e-02	k: 7081	n:120000
KS ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
CLSTN1   120000 perm   32 sec   (3778 perm/sec)   p_kst 8.333333e-06   p_cons 5.900833e-02   p_joint 5.000000e-05

Joint ci ratio: 1.385881e+00	ci left: 2.164921e-05	ci right 1.109405e-04	k: 7	n:130000
Cons ci ratio: 4.341919e-02	ci left: 5.771754e-02	ci right 6.028679e-02	k: 7669	n:130000
KS ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
CLSTN1   130000 perm   35 sec   (3722 perm/sec)   p_kst 7.692308e-06   p_cons 5.899231e-02   p_joint 5.384615e-05

Joint ci ratio: 1.181874e+00	ci left: 3.425329e-05	ci right 1.313557e-04	k: 10	n:140000
Cons ci ratio: 4.188831e-02	ci left: 5.763694e-02	ci right 6.010994e-02	k: 8241	n:140000
KS ci ratio: 2.263181e+00	ci left: 1.730071e-06	ci right 5.160395e-05	k: 2	n:140000
CLSTN1   140000 perm   38 sec   (3661 perm/sec)   p_kst 1.428571e-05   p_cons 5.886429e-02   p_joint 7.142857e-05

Joint ci ratio: 1.131557e+00	ci left: 3.660829e-05	ci right 1.312098e-04	k: 11	n:150000
Cons ci ratio: 4.042351e-02	ci left: 5.779959e-02	ci right 6.019083e-02	k: 8848	n:150000
KS ci ratio: 2.263183e+00	ci left: 1.614733e-06	ci right 4.816375e-05	k: 2	n:150000
CLSTN1   150000 perm   42 sec   (3612 perm/sec)   p_kst 1.333333e-05   p_cons 5.898667e-02   p_joint 7.333333e-05

Joint ci ratio: 1.239570e+00	ci left: 2.572139e-05	ci right 1.067773e-04	k: 9	n:160000
Cons ci ratio: 3.753058e-02	ci left: 6.263205e-02	ci right 6.503379e-02	k: 10212	n:160000
KS ci ratio: 2.263185e+00	ci left: 1.513812e-06	ci right 4.515356e-05	k: 2	n:160000
CLSTN1   160000 perm   45 sec   (3555 perm/sec)   p_kst 1.250000e-05   p_cons 6.382500e-02   p_joint 5.625000e-05

Joint ci ratio: 1.131563e+00	ci left: 3.230137e-05	ci right 1.157737e-04	k: 11	n:170000
Cons ci ratio: 3.636406e-02	ci left: 6.281771e-02	ci right 6.515013e-02	k: 10876	n:170000
KS ci ratio: 2.263186e+00	ci left: 1.424764e-06	ci right 4.249751e-05	k: 2	n:170000
CLSTN1   170000 perm   49 sec   (3495 perm/sec)   p_kst 1.176471e-05   p_cons 6.397647e-02   p_joint 6.470588e-05

Joint ci ratio: 1.131566e+00	ci left: 3.050683e-05	ci right 1.093420e-04	k: 11	n:180000
Cons ci ratio: 3.536384e-02	ci left: 6.276889e-02	ci right 6.503407e-02	k: 11501	n:180000
KS ci ratio: 2.263188e+00	ci left: 1.345610e-06	ci right 4.013657e-05	k: 2	n:180000
CLSTN1   180000 perm   52 sec   (3442 perm/sec)   p_kst 1.111111e-05   p_cons 6.389444e-02   p_joint 6.111111e-05

Joint ci ratio: 1.131568e+00	ci left: 2.890119e-05	ci right 1.035873e-04	k: 11	n:190000
Cons ci ratio: 3.442519e-02	ci left: 6.278342e-02	ci right 6.498780e-02	k: 12137	n:190000
KS ci ratio: 2.263189e+00	ci left: 1.274788e-06	ci right 3.802415e-05	k: 2	n:190000
CLSTN1   190000 perm   56 sec   (3388 perm/sec)   p_kst 1.052632e-05   p_cons 6.387895e-02   p_joint 5.789474e-05

Joint ci ratio: 1.131570e+00	ci left: 2.745611e-05	ci right 9.840806e-05	k: 11	n:200000
Cons ci ratio: 3.360390e-02	ci left: 6.263352e-02	ci right 6.477915e-02	k: 12740	n:200000
KS ci ratio: 2.263190e+00	ci left: 1.211049e-06	ci right 3.612297e-05	k: 2	n:200000
CLSTN1   200000 perm   60 sec   (3335 perm/sec)   p_kst 1.000000e-05   p_cons 6.370000e-02   p_joint 5.500000e-05

Joint ci ratio: 1.131572e+00	ci left: 2.614866e-05	ci right 9.372206e-05	k: 11	n:210000
Cons ci ratio: 3.276013e-02	ci left: 6.278199e-02	ci right 6.487769e-02	k: 13403	n:210000
KS ci ratio: 2.263192e+00	ci left: 1.153380e-06	ci right 3.440285e-05	k: 2	n:210000
CLSTN1   210000 perm   64 sec   (3290 perm/sec)   p_kst 9.523810e-06   p_cons 6.382381e-02   p_joint 5.238095e-05

Joint ci ratio: 1.131573e+00	ci left: 2.496008e-05	ci right 8.946205e-05	k: 11	n:220000
Cons ci ratio: 3.197688e-02	ci left: 6.291758e-02	ci right 6.496666e-02	k: 14066	n:220000
KS ci ratio: 2.263192e+00	ci left: 1.100953e-06	ci right 3.283910e-05	k: 2	n:220000
CLSTN1   220000 perm   68 sec   (3244 perm/sec)   p_kst 9.090909e-06   p_cons 6.393636e-02   p_joint 5.000000e-05

Joint ci ratio: 1.047630e+00	ci left: 3.009578e-05	ci right 9.665196e-05	k: 13	n:230000
Cons ci ratio: 3.125972e-02	ci left: 6.299443e-02	ci right 6.499918e-02	k: 14718	n:230000
KS ci ratio: 2.263193e+00	ci left: 1.053086e-06	ci right 3.141133e-05	k: 2	n:230000
CLSTN1   230000 perm   72 sec   (3195 perm/sec)   p_kst 8.695652e-06   p_cons 6.399130e-02   p_joint 5.652174e-05

Joint ci ratio: 1.047631e+00	ci left: 2.884177e-05	ci right 9.262487e-05	k: 13	n:240000
Cons ci ratio: 3.063134e-02	ci left: 6.289988e-02	ci right 6.486067e-02	k: 15330	n:240000
KS ci ratio: 2.263194e+00	ci left: 1.009207e-06	ci right 3.010254e-05	k: 2	n:240000
CLSTN1   240000 perm   76 sec   (3146 perm/sec)   p_kst 8.333333e-06   p_cons 6.387500e-02   p_joint 5.416667e-05

Joint ci ratio: 1.047633e+00	ci left: 2.768809e-05	ci right 8.891994e-05	k: 13	n:250000
Cons ci ratio: 3.003235e-02	ci left: 6.284107e-02	ci right 6.476106e-02	k: 15949	n:250000
KS ci ratio: 2.263195e+00	ci left: 9.688386e-07	ci right 2.889845e-05	k: 2	n:250000
CLSTN1   250000 perm   81 sec   (3103 perm/sec)   p_kst 8.000000e-06   p_cons 6.379600e-02   p_joint 5.200000e-05

Joint ci ratio: 1.047634e+00	ci left: 2.662315e-05	ci right 8.550001e-05	k: 13	n:260000
Cons ci ratio: 2.945863e-02	ci left: 6.282151e-02	ci right 6.470361e-02	k: 16577	n:260000
KS ci ratio: 2.263196e+00	ci left: 9.315755e-07	ci right 2.778698e-05	k: 2	n:260000
CLSTN1   260000 perm   85 sec   (3056 perm/sec)   p_kst 7.692308e-06   p_cons 6.375769e-02   p_joint 5.000000e-05

Joint ci ratio: 1.047635e+00	ci left: 2.563710e-05	ci right 8.233339e-05	k: 13	n:270000
Cons ci ratio: 2.894264e-02	ci left: 6.269705e-02	ci right 6.454196e-02	k: 17176	n:270000
KS ci ratio: 2.263196e+00	ci left: 8.970727e-07	ci right 2.675784e-05	k: 2	n:270000
CLSTN1   270000 perm   89 sec   (3020 perm/sec)   p_kst 7.407407e-06   p_cons 6.361481e-02   p_joint 4.814815e-05

Joint ci ratio: 1.047636e+00	ci left: 2.472148e-05	ci right 7.939296e-05	k: 13	n:280000
Cons ci ratio: 2.838979e-02	ci left: 6.284428e-02	ci right 6.465762e-02	k: 17849	n:280000
KS ci ratio: 2.263197e+00	ci left: 8.650343e-07	ci right 2.580222e-05	k: 2	n:280000
CLSTN1   280000 perm   94 sec   (2978 perm/sec)   p_kst 7.142857e-06   p_cons 6.374643e-02   p_joint 4.642857e-05

Joint ci ratio: 1.087186e+00	ci left: 2.138147e-05	ci right 7.228021e-05	k: 12	n:290000
Cons ci ratio: 2.789803e-02	ci left: 6.285148e-02	ci right 6.463312e-02	k: 18484	n:290000
KS ci ratio: 2.263197e+00	ci left: 8.352055e-07	ci right 2.491249e-05	k: 2	n:290000
CLSTN1   290000 perm   99 sec   (2943 perm/sec)   p_kst 6.896552e-06   p_cons 6.373793e-02   p_joint 4.137931e-05

Joint ci ratio: 1.047638e+00	ci left: 2.307337e-05	ci right 7.410018e-05	k: 13	n:300000
Cons ci ratio: 2.742715e-02	ci left: 6.287501e-02	ci right 6.462676e-02	k: 19124	n:300000
KS ci ratio: 1.959984e+00	ci left: 2.062245e-06	ci right 2.922396e-05	k: 3	n:300000
CLSTN1   300000 perm   103 sec   (2914 perm/sec)   p_kst 1.000000e-05   p_cons 6.374667e-02   p_joint 4.333333e-05

Joint ci ratio: 9.799731e-01	ci left: 2.708214e-05	ci right 7.980590e-05	k: 15	n:310000
Cons ci ratio: 2.695166e-02	ci left: 6.301908e-02	ci right 6.474393e-02	k: 19802	n:310000
KS ci ratio: 1.959984e+00	ci left: 1.995721e-06	ci right 2.828126e-05	k: 3	n:310000
CLSTN1   310000 perm   108 sec   (2879 perm/sec)   p_kst 9.677419e-06   p_cons 6.387742e-02   p_joint 4.838710e-05

Joint ci ratio: 1.481602e+00	ci left: 6.880950e-06	ci right 4.081041e-05	k: 6	n:320000
Cons ci ratio: 2.648902e-02	ci left: 6.320407e-02	ci right 6.490384e-02	k: 20496	n:320000
KS ci ratio: 1.959985e+00	ci left: 1.933355e-06	ci right 2.739748e-05	k: 3	n:320000
CLSTN1   320000 perm   113 sec   (2843 perm/sec)   p_kst 9.375000e-06   p_cons 6.405000e-02   p_joint 1.875000e-05

Joint ci ratio: 1.481603e+00	ci left: 6.672435e-06	ci right 3.957374e-05	k: 6	n:330000
Cons ci ratio: 2.611730e-02	ci left: 6.306786e-02	ci right 6.473981e-02	k: 21087	n:330000
KS ci ratio: 1.959985e+00	ci left: 1.874768e-06	ci right 2.656726e-05	k: 3	n:330000
CLSTN1   330000 perm   118 sec   (2799 perm/sec)   p_kst 9.090909e-06   p_cons 6.390000e-02   p_joint 1.818182e-05

Joint ci ratio: 1.481603e+00	ci left: 6.476186e-06	ci right 3.840982e-05	k: 6	n:340000
Cons ci ratio: 2.572026e-02	ci left: 6.312693e-02	ci right 6.477463e-02	k: 21742	n:340000
KS ci ratio: 1.959986e+00	ci left: 1.819628e-06	ci right 2.578588e-05	k: 3	n:340000
CLSTN1   340000 perm   123 sec   (2759 perm/sec)   p_kst 8.823529e-06   p_cons 6.394706e-02   p_joint 1.764706e-05

Joint ci ratio: 1.481604e+00	ci left: 6.291152e-06	ci right 3.731241e-05	k: 6	n:350000
Cons ci ratio: 2.535712e-02	ci left: 6.310612e-02	ci right 6.472968e-02	k: 22370	n:350000
KS ci ratio: 1.959986e+00	ci left: 1.767638e-06	ci right 2.504915e-05	k: 3	n:350000
CLSTN1   350000 perm   129 sec   (2724 perm/sec)   p_kst 8.571429e-06   p_cons 6.391429e-02   p_joint 1.714286e-05

Joint ci ratio: 1.481604e+00	ci left: 6.116397e-06	ci right 3.627596e-05	k: 6	n:360000
Cons ci ratio: 2.501534e-02	ci left: 6.305625e-02	ci right 6.465634e-02	k: 22987	n:360000
KS ci ratio: 1.959986e+00	ci left: 1.718537e-06	ci right 2.435334e-05	k: 3	n:360000
CLSTN1   360000 perm   133 sec   (2697 perm/sec)   p_kst 8.333333e-06   p_cons 6.385278e-02   p_joint 1.666667e-05

Joint ci ratio: 1.481605e+00	ci left: 5.951088e-06	ci right 3.529554e-05	k: 6	n:370000
Cons ci ratio: 2.468087e-02	ci left: 6.303877e-02	ci right 6.461672e-02	k: 23615	n:370000
KS ci ratio: 1.959987e+00	ci left: 1.672090e-06	ci right 2.369515e-05	k: 3	n:370000
CLSTN1   370000 perm   139 sec   (2669 perm/sec)   p_kst 8.108108e-06   p_cons 6.382432e-02   p_joint 1.621622e-05

Joint ci ratio: 1.481605e+00	ci left: 5.794480e-06	ci right 3.436672e-05	k: 6	n:380000
Cons ci ratio: 2.437827e-02	ci left: 6.293076e-02	ci right 6.448643e-02	k: 24208	n:380000
KS ci ratio: 1.959987e+00	ci left: 1.628087e-06	ci right 2.307160e-05	k: 3	n:380000
CLSTN1   380000 perm   144 sec   (2640 perm/sec)   p_kst 7.894737e-06   p_cons 6.370526e-02   p_joint 1.578947e-05

Joint ci ratio: 1.481606e+00	ci left: 5.645903e-06	ci right 3.348553e-05	k: 6	n:390000
Cons ci ratio: 2.405133e-02	ci left: 6.300179e-02	ci right 6.453803e-02	k: 24869	n:390000
KS ci ratio: 1.959987e+00	ci left: 1.586342e-06	ci right 2.248002e-05	k: 3	n:390000
CLSTN1   390000 perm   149 sec   (2611 perm/sec)   p_kst 7.692308e-06   p_cons 6.376667e-02   p_joint 1.538462e-05

Joint ci ratio: 1.481606e+00	ci left: 5.504755e-06	ci right 3.264840e-05	k: 6	n:400000
Cons ci ratio: 2.371985e-02	ci left: 6.315641e-02	ci right 6.467491e-02	k: 25565	n:400000
KS ci ratio: 1.959988e+00	ci left: 1.546683e-06	ci right 2.191802e-05	k: 3	n:400000
CLSTN1   400000 perm   155 sec   (2585 perm/sec)   p_kst 7.500000e-06   p_cons 6.391250e-02   p_joint 1.500000e-05

Joint ci ratio: 1.481606e+00	ci left: 5.370492e-06	ci right 3.185210e-05	k: 6	n:410000
Cons ci ratio: 2.343269e-02	ci left: 6.314596e-02	ci right 6.464558e-02	k: 26196	n:410000
KS ci ratio: 1.959988e+00	ci left: 1.508959e-06	ci right 2.138344e-05	k: 3	n:410000
CLSTN1   410000 perm   160 sec   (2559 perm/sec)   p_kst 7.317073e-06   p_cons 6.389268e-02   p_joint 1.463415e-05

Joint ci ratio: 1.481607e+00	ci left: 5.242623e-06	ci right 3.109372e-05	k: 6	n:420000
Cons ci ratio: 2.314419e-02	ci left: 6.319531e-02	ci right 6.467738e-02	k: 26852	n:420000
KS ci ratio: 1.959988e+00	ci left: 1.473031e-06	ci right 2.087432e-05	k: 3	n:420000
CLSTN1   420000 perm   166 sec   (2529 perm/sec)   p_kst 7.142857e-06   p_cons 6.393333e-02   p_joint 1.428571e-05

Joint ci ratio: 1.481607e+00	ci left: 5.120701e-06	ci right 3.037062e-05	k: 6	n:430000
Cons ci ratio: 2.285811e-02	ci left: 6.328411e-02	ci right 6.474968e-02	k: 27526	n:430000
KS ci ratio: 1.959989e+00	ci left: 1.438775e-06	ci right 2.038887e-05	k: 3	n:430000
CLSTN1   430000 perm   172 sec   (2501 perm/sec)   p_kst 6.976744e-06   p_cons 6.401395e-02   p_joint 1.395349e-05

Joint ci ratio: 1.481607e+00	ci left: 5.004321e-06	ci right 2.968038e-05	k: 6	n:440000
Cons ci ratio: 2.260852e-02	ci left: 6.323108e-02	ci right 6.467922e-02	k: 28139	n:440000
KS ci ratio: 1.959989e+00	ci left: 1.406075e-06	ci right 1.992549e-05	k: 3	n:440000
CLSTN1   440000 perm   178 sec   (2475 perm/sec)   p_kst 6.818182e-06   p_cons 6.395227e-02   p_joint 1.363636e-05

Joint ci ratio: 1.481608e+00	ci left: 4.893114e-06	ci right 2.902083e-05	k: 6	n:450000
Cons ci ratio: 2.235488e-02	ci left: 6.324459e-02	ci right 6.467659e-02	k: 28781	n:450000
KS ci ratio: 1.959989e+00	ci left: 1.374829e-06	ci right 1.948270e-05	k: 3	n:450000
CLSTN1   450000 perm   184 sec   (2451 perm/sec)   p_kst 6.666667e-06   p_cons 6.395778e-02   p_joint 1.333333e-05

Joint ci ratio: 1.600321e+00	ci left: 3.529327e-06	ci right 2.536576e-05	k: 5	n:460000
Cons ci ratio: 2.211401e-02	ci left: 6.323382e-02	ci right 6.464994e-02	k: 29412	n:460000
KS ci ratio: 1.959989e+00	ci left: 1.344941e-06	ci right 1.905917e-05	k: 3	n:460000
CLSTN1   460000 perm   190 sec   (2419 perm/sec)   p_kst 6.521739e-06   p_cons 6.393913e-02   p_joint 1.086957e-05

Joint ci ratio: 1.600321e+00	ci left: 3.454235e-06	ci right 2.482606e-05	k: 5	n:470000
Cons ci ratio: 2.189088e-02	ci left: 6.316854e-02	ci right 6.456876e-02	k: 30017	n:470000
KS ci ratio: 1.959990e+00	ci left: 1.316326e-06	ci right 1.865366e-05	k: 3	n:470000
CLSTN1   470000 perm   196 sec   (2395 perm/sec)   p_kst 6.382979e-06   p_cons 6.386596e-02   p_joint 1.063830e-05

Joint ci ratio: 1.600322e+00	ci left: 3.382272e-06	ci right 2.430886e-05	k: 5	n:480000
Cons ci ratio: 2.166040e-02	ci left: 6.318275e-02	ci right 6.456835e-02	k: 30659	n:480000
KS ci ratio: 1.959990e+00	ci left: 1.288902e-06	ci right 1.826504e-05	k: 3	n:480000
CLSTN1   480000 perm   202 sec   (2371 perm/sec)   p_kst 6.250000e-06   p_cons 6.387292e-02   p_joint 1.041667e-05

Joint ci ratio: 1.600322e+00	ci left: 3.313246e-06	ci right 2.381276e-05	k: 5	n:490000
Cons ci ratio: 2.144107e-02	ci left: 6.317412e-02	ci right 6.454533e-02	k: 31290	n:490000
KS ci ratio: 1.959990e+00	ci left: 1.262598e-06	ci right 1.789229e-05	k: 3	n:490000
CLSTN1   490000 perm   209 sec   (2348 perm/sec)   p_kst 6.122449e-06   p_cons 6.385714e-02   p_joint 1.020408e-05

Joint ci ratio: 1.600322e+00	ci left: 3.246980e-06	ci right 2.333651e-05	k: 5	n:500000
Cons ci ratio: 2.360379e-02	ci left: 5.166064e-02	ci right 5.289656e-02	k: 26138	n:500000
KS ci ratio: 1.959990e+00	ci left: 1.237346e-06	ci right 1.753445e-05	k: 3	n:500000
CLSTN1   500000 perm   215 sec   (2323 perm/sec)   p_kst 6.000000e-06   p_cons 5.227600e-02   p_joint 1.000000e-05

Joint ci ratio: 1.600322e+00	ci left: 3.183314e-06	ci right 2.287893e-05	k: 5	n:510000
Cons ci ratio: 2.336327e-02	ci left: 5.170030e-02	ci right 5.292440e-02	k: 26678	n:510000
KS ci ratio: 1.959990e+00	ci left: 1.213084e-06	ci right 1.719063e-05	k: 3	n:510000
CLSTN1   510000 perm   222 sec   (2300 perm/sec)   p_kst 5.882353e-06   p_cons 5.230980e-02   p_joint 9.803922e-06

Joint ci ratio: 1.600323e+00	ci left: 3.122096e-06	ci right 2.243896e-05	k: 5	n:520000
Cons ci ratio: 2.316051e-02	ci left: 5.160845e-02	ci right 5.281962e-02	k: 27150	n:520000
KS ci ratio: 1.959991e+00	ci left: 1.189756e-06	ci right 1.686005e-05	k: 3	n:520000
CLSTN1   520000 perm   228 sec   (2280 perm/sec)   p_kst 5.769231e-06   p_cons 5.221154e-02   p_joint 9.615385e-06

Joint ci ratio: 1.600323e+00	ci left: 3.063189e-06	ci right 2.201558e-05	k: 5	n:530000
Cons ci ratio: 2.294190e-02	ci left: 5.161018e-02	ci right 5.280981e-02	k: 27670	n:530000
KS ci ratio: 1.959991e+00	ci left: 1.167307e-06	ci right 1.654193e-05	k: 3	n:530000
CLSTN1   530000 perm   235 sec   (2257 perm/sec)   p_kst 5.660377e-06   p_cons 5.220755e-02   p_joint 9.433962e-06

Joint ci ratio: 1.600323e+00	ci left: 3.006463e-06	ci right 2.160789e-05	k: 5	n:540000
Cons ci ratio: 2.274385e-02	ci left: 5.154928e-02	ci right 5.273701e-02	k: 28156	n:540000
KS ci ratio: 1.959991e+00	ci left: 1.145691e-06	ci right 1.623560e-05	k: 3	n:540000
CLSTN1   540000 perm   242 sec   (2235 perm/sec)   p_kst 5.555556e-06   p_cons 5.214074e-02   p_joint 9.259259e-06

Joint ci ratio: 1.600323e+00	ci left: 2.951800e-06	ci right 2.121502e-05	k: 5	n:550000
Cons ci ratio: 2.253673e-02	ci left: 5.155212e-02	ci right 5.272897e-02	k: 28676	n:550000
KS ci ratio: 1.959991e+00	ci left: 1.124860e-06	ci right 1.594041e-05	k: 3	n:550000
CLSTN1   550000 perm   249 sec   (2213 perm/sec)   p_kst 5.454545e-06   p_cons 5.213818e-02   p_joint 9.090909e-06

Joint ci ratio: 1.600323e+00	ci left: 2.899089e-06	ci right 2.083618e-05	k: 5	n:560000
Cons ci ratio: 2.235618e-02	ci left: 5.146254e-02	ci right 5.262781e-02	k: 29144	n:560000
KS ci ratio: 1.959991e+00	ci left: 1.104773e-06	ci right 1.565576e-05	k: 3	n:560000
CLSTN1   560000 perm   256 sec   (2191 perm/sec)   p_kst 5.357143e-06   p_cons 5.204286e-02   p_joint 8.928571e-06

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.471697e-06	k: 0	n:570000
Cons ci ratio: 2.215033e-02	ci left: 5.150703e-02	ci right 5.266244e-02	k: 29687	n:570000
KS ci ratio: 2.771851e+00	ci left: 4.441721e-08	ci right 9.774774e-06	k: 1	n:570000
CLSTN1   570000 perm   263 sec   (2170 perm/sec)   p_kst 1.754386e-06   p_cons 5.208246e-02   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.360117e-06	k: 0	n:580000
Cons ci ratio: 2.196194e-02	ci left: 5.149687e-02	ci right 5.264209e-02	k: 30199	n:580000
KS ci ratio: 2.771851e+00	ci left: 4.365139e-08	ci right 9.606244e-06	k: 1	n:580000
CLSTN1   580000 perm   270 sec   (2150 perm/sec)   p_kst 1.724138e-06   p_cons 5.206724e-02   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.252319e-06	k: 0	n:590000
Cons ci ratio: 2.176183e-02	ci left: 5.156128e-02	ci right 5.269736e-02	k: 30755	n:590000
KS ci ratio: 2.771852e+00	ci left: 4.291154e-08	ci right 9.443427e-06	k: 1	n:590000
CLSTN1   590000 perm   277 sec   (2130 perm/sec)   p_kst 1.694915e-06   p_cons 5.212712e-02   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.148114e-06	k: 0	n:600000
Cons ci ratio: 2.071302e-02	ci left: 5.574793e-02	ci right 5.691636e-02	k: 33798	n:600000
KS ci ratio: 2.771852e+00	ci left: 4.219635e-08	ci right 9.286037e-06	k: 1	n:600000
CLSTN1   600000 perm   284 sec   (2111 perm/sec)   p_kst 1.666667e-06   p_cons 5.633000e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 6.047325e-06	k: 0	n:610000
Cons ci ratio: 2.054962e-02	ci left: 5.571633e-02	ci right 5.687478e-02	k: 34339	n:610000
KS ci ratio: 2.771852e+00	ci left: 4.150460e-08	ci right 9.133807e-06	k: 1	n:610000
CLSTN1   610000 perm   292 sec   (2092 perm/sec)   p_kst 1.639344e-06   p_cons 5.629344e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.949788e-06	k: 0	n:620000
Cons ci ratio: 2.038290e-02	ci left: 5.572270e-02	ci right 5.687177e-02	k: 34903	n:620000
KS ci ratio: 2.771852e+00	ci left: 4.083517e-08	ci right 8.986488e-06	k: 1	n:620000
CLSTN1   620000 perm   299 sec   (2073 perm/sec)   p_kst 1.612903e-06   p_cons 5.629516e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.855347e-06	k: 0	n:630000
Cons ci ratio: 2.021624e-02	ci left: 5.574945e-02	ci right 5.688956e-02	k: 35480	n:630000
KS ci ratio: 2.771852e+00	ci left: 4.018700e-08	ci right 8.843846e-06	k: 1	n:630000
CLSTN1   630000 perm   307 sec   (2054 perm/sec)   p_kst 1.587302e-06   p_cons 5.631746e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.763858e-06	k: 0	n:640000
Cons ci ratio: 2.005833e-02	ci left: 5.575051e-02	ci right 5.688164e-02	k: 36041	n:640000
KS ci ratio: 2.771852e+00	ci left: 3.955907e-08	ci right 8.705662e-06	k: 1	n:640000
CLSTN1   640000 perm   314 sec   (2036 perm/sec)   p_kst 1.562500e-06   p_cons 5.631406e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.675183e-06	k: 0	n:650000
Cons ci ratio: 1.990118e-02	ci left: 5.576689e-02	ci right 5.688938e-02	k: 36612	n:650000
KS ci ratio: 2.771852e+00	ci left: 3.895047e-08	ci right 8.571729e-06	k: 1	n:650000
CLSTN1   650000 perm   322 sec   (2019 perm/sec)   p_kst 1.538462e-06   p_cons 5.632615e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.589196e-06	k: 0	n:660000
Cons ci ratio: 1.974372e-02	ci left: 5.580391e-02	ci right 5.691817e-02	k: 37197	n:660000
KS ci ratio: 2.771852e+00	ci left: 3.836031e-08	ci right 8.441855e-06	k: 1	n:660000
CLSTN1   660000 perm   329 sec   (2004 perm/sec)   p_kst 1.515152e-06   p_cons 5.635909e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.505775e-06	k: 0	n:670000
Cons ci ratio: 1.958857e-02	ci left: 5.584730e-02	ci right 5.695356e-02	k: 37787	n:670000
KS ci ratio: 2.771852e+00	ci left: 3.778777e-08	ci right 8.315857e-06	k: 1	n:670000
CLSTN1   670000 perm   337 sec   (1987 perm/sec)   p_kst 1.492537e-06   p_cons 5.639851e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.424808e-06	k: 0	n:680000
Cons ci ratio: 1.944186e-02	ci left: 5.586309e-02	ci right 5.696128e-02	k: 38359	n:680000
KS ci ratio: 2.771852e+00	ci left: 3.723207e-08	ci right 8.193566e-06	k: 1	n:680000
CLSTN1   680000 perm   345 sec   (1970 perm/sec)   p_kst 1.470588e-06   p_cons 5.641029e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.346188e-06	k: 0	n:690000
Cons ci ratio: 1.929288e-02	ci left: 5.590875e-02	ci right 5.699932e-02	k: 38952	n:690000
KS ci ratio: 2.771853e+00	ci left: 3.669247e-08	ci right 8.074819e-06	k: 1	n:690000
CLSTN1   690000 perm   353 sec   (1957 perm/sec)   p_kst 1.449275e-06   p_cons 5.645217e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.269814e-06	k: 0	n:700000
Cons ci ratio: 1.916062e-02	ci left: 5.587919e-02	ci right 5.696163e-02	k: 39493	n:700000
KS ci ratio: 2.771853e+00	ci left: 3.616830e-08	ci right 7.959465e-06	k: 1	n:700000
CLSTN1   700000 perm   361 sec   (1941 perm/sec)   p_kst 1.428571e-06   p_cons 5.641857e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.195591e-06	k: 0	n:710000
Cons ci ratio: 1.903030e-02	ci left: 5.585469e-02	ci right 5.692922e-02	k: 40037	n:710000
KS ci ratio: 2.771853e+00	ci left: 3.565888e-08	ci right 7.847360e-06	k: 1	n:710000
CLSTN1   710000 perm   369 sec   (1926 perm/sec)   p_kst 1.408451e-06   p_cons 5.639014e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.123431e-06	k: 0	n:720000
Cons ci ratio: 1.889790e-02	ci left: 5.585717e-02	ci right 5.692418e-02	k: 40600	n:720000
KS ci ratio: 2.771853e+00	ci left: 3.516362e-08	ci right 7.738369e-06	k: 1	n:720000
CLSTN1   720000 perm   377 sec   (1910 perm/sec)   p_kst 1.388889e-06   p_cons 5.638889e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.053247e-06	k: 0	n:730000
Cons ci ratio: 1.876969e-02	ci left: 5.585142e-02	ci right 5.691101e-02	k: 41157	n:730000
KS ci ratio: 2.771853e+00	ci left: 3.468193e-08	ci right 7.632364e-06	k: 1	n:730000
CLSTN1   730000 perm   385 sec   (1895 perm/sec)   p_kst 1.369863e-06   p_cons 5.637945e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.984960e-06	k: 0	n:740000
Cons ci ratio: 1.864760e-02	ci left: 5.582567e-02	ci right 5.687781e-02	k: 41699	n:740000
KS ci ratio: 2.771853e+00	ci left: 3.421325e-08	ci right 7.529225e-06	k: 1	n:740000
CLSTN1   740000 perm   394 sec   (1880 perm/sec)   p_kst 1.351351e-06   p_cons 5.635000e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.918494e-06	k: 0	n:750000
Cons ci ratio: 1.851997e-02	ci left: 5.584576e-02	ci right 5.689100e-02	k: 42275	n:750000
KS ci ratio: 2.771853e+00	ci left: 3.375708e-08	ci right 7.428835e-06	k: 1	n:750000
CLSTN1   750000 perm   402 sec   (1867 perm/sec)   p_kst 1.333333e-06   p_cons 5.636667e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.853777e-06	k: 0	n:760000
Cons ci ratio: 1.840129e-02	ci left: 5.582867e-02	ci right 5.686682e-02	k: 42823	n:760000
KS ci ratio: 2.771853e+00	ci left: 3.331290e-08	ci right 7.331088e-06	k: 1	n:760000
CLSTN1   760000 perm   410 sec   (1853 perm/sec)   p_kst 1.315789e-06   p_cons 5.634605e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.790741e-06	k: 0	n:770000
Cons ci ratio: 1.828464e-02	ci left: 5.581333e-02	ci right 5.684455e-02	k: 43372	n:770000
KS ci ratio: 2.771853e+00	ci left: 3.288027e-08	ci right 7.235879e-06	k: 1	n:770000
CLSTN1   770000 perm   419 sec   (1839 perm/sec)   p_kst 1.298701e-06   p_cons 5.632727e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.729321e-06	k: 0	n:780000
Cons ci ratio: 1.815880e-02	ci left: 5.586479e-02	ci right 5.688979e-02	k: 43973	n:780000
KS ci ratio: 2.771853e+00	ci left: 3.245873e-08	ci right 7.143112e-06	k: 1	n:780000
CLSTN1   780000 perm   427 sec   (1826 perm/sec)   p_kst 1.282051e-06   p_cons 5.637564e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.669457e-06	k: 0	n:790000
Cons ci ratio: 1.804732e-02	ci left: 5.584565e-02	ci right 5.686394e-02	k: 44519	n:790000
KS ci ratio: 2.771853e+00	ci left: 3.204786e-08	ci right 7.052693e-06	k: 1	n:790000
CLSTN1   790000 perm   436 sec   (1813 perm/sec)   p_kst 1.265823e-06   p_cons 5.635316e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.611089e-06	k: 0	n:800000
Cons ci ratio: 1.793766e-02	ci left: 5.582825e-02	ci right 5.683997e-02	k: 45066	n:800000
KS ci ratio: 2.771853e+00	ci left: 3.164726e-08	ci right 6.964534e-06	k: 1	n:800000
CLSTN1   800000 perm   445 sec   (1800 perm/sec)   p_kst 1.250000e-06   p_cons 5.633250e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.554162e-06	k: 0	n:810000
Cons ci ratio: 1.782997e-02	ci left: 5.581130e-02	ci right 5.681657e-02	k: 45613	n:810000
KS ci ratio: 2.771853e+00	ci left: 3.125655e-08	ci right 6.878553e-06	k: 1	n:810000
CLSTN1   810000 perm   454 sec   (1785 perm/sec)   p_kst 1.234568e-06   p_cons 5.631235e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.498623e-06	k: 0	n:820000
Cons ci ratio: 1.772257e-02	ci left: 5.580449e-02	ci right 5.680353e-02	k: 46168	n:820000
KS ci ratio: 2.771854e+00	ci left: 3.087538e-08	ci right 6.794668e-06	k: 1	n:820000
CLSTN1   820000 perm   463 sec   (1772 perm/sec)   p_kst 1.219512e-06   p_cons 5.630244e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.444423e-06	k: 0	n:830000
Cons ci ratio: 1.762069e-02	ci left: 5.577627e-02	ci right 5.676900e-02	k: 46705	n:830000
KS ci ratio: 2.771854e+00	ci left: 3.050338e-08	ci right 6.712805e-06	k: 1	n:830000
CLSTN1   830000 perm   472 sec   (1759 perm/sec)   p_kst 1.204819e-06   p_cons 5.627108e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.391514e-06	k: 0	n:840000
Cons ci ratio: 1.751583e-02	ci left: 5.577719e-02	ci right 5.676397e-02	k: 47266	n:840000
KS ci ratio: 2.771854e+00	ci left: 3.014025e-08	ci right 6.632891e-06	k: 1	n:840000
CLSTN1   840000 perm   481 sec   (1747 perm/sec)   p_kst 1.190476e-06   p_cons 5.626905e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.339849e-06	k: 0	n:850000
Cons ci ratio: 1.740780e-02	ci left: 5.580857e-02	ci right 5.678976e-02	k: 47853	n:850000
KS ci ratio: 2.771854e+00	ci left: 2.978566e-08	ci right 6.554857e-06	k: 1	n:850000
CLSTN1   850000 perm   490 sec   (1734 perm/sec)   p_kst 1.176471e-06   p_cons 5.629765e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.289386e-06	k: 0	n:860000
Cons ci ratio: 1.731483e-02	ci left: 5.575933e-02	ci right 5.673436e-02	k: 48371	n:860000
KS ci ratio: 2.771854e+00	ci left: 2.943931e-08	ci right 6.478638e-06	k: 1	n:860000
CLSTN1   860000 perm   500 sec   (1721 perm/sec)   p_kst 1.162791e-06   p_cons 5.624535e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.240082e-06	k: 0	n:870000
Cons ci ratio: 1.721269e-02	ci left: 5.577649e-02	ci right 5.674601e-02	k: 48946	n:870000
KS ci ratio: 2.771854e+00	ci left: 2.910093e-08	ci right 6.404171e-06	k: 1	n:870000
CLSTN1   870000 perm   509 sec   (1709 perm/sec)   p_kst 1.149425e-06   p_cons 5.625977e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.191900e-06	k: 0	n:880000
Cons ci ratio: 1.711967e-02	ci left: 5.574800e-02	ci right 5.671174e-02	k: 49481	n:880000
KS ci ratio: 2.771854e+00	ci left: 2.877024e-08	ci right 6.331396e-06	k: 1	n:880000
CLSTN1   880000 perm   519 sec   (1696 perm/sec)   p_kst 1.136364e-06   p_cons 5.622841e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.144800e-06	k: 0	n:890000
Cons ci ratio: 1.702922e-02	ci left: 5.571345e-02	ci right 5.667146e-02	k: 50010	n:890000
KS ci ratio: 2.771854e+00	ci left: 2.844697e-08	ci right 6.260257e-06	k: 1	n:890000
CLSTN1   890000 perm   528 sec   (1684 perm/sec)   p_kst 1.123596e-06   p_cons 5.619101e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.098747e-06	k: 0	n:900000
Cons ci ratio: 1.693221e-02	ci left: 5.572949e-02	ci right 5.668226e-02	k: 50584	n:900000
KS ci ratio: 2.771854e+00	ci left: 2.813090e-08	ci right 6.190699e-06	k: 1	n:900000
CLSTN1   900000 perm   538 sec   (1672 perm/sec)   p_kst 1.111111e-06   p_cons 5.620444e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.053705e-06	k: 0	n:910000
Cons ci ratio: 1.683300e-02	ci left: 5.576927e-02	ci right 5.671708e-02	k: 51180	n:910000
KS ci ratio: 2.771854e+00	ci left: 2.782177e-08	ci right 6.122670e-06	k: 1	n:910000
CLSTN1   910000 perm   548 sec   (1661 perm/sec)   p_kst 1.098901e-06   p_cons 5.624176e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.009644e-06	k: 0	n:920000
Cons ci ratio: 1.674220e-02	ci left: 5.576597e-02	ci right 5.670856e-02	k: 51737	n:920000
KS ci ratio: 2.771854e+00	ci left: 2.751936e-08	ci right 6.056119e-06	k: 1	n:920000
CLSTN1   920000 perm   557 sec   (1651 perm/sec)   p_kst 1.086957e-06   p_cons 5.623587e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.966529e-06	k: 0	n:930000
Cons ci ratio: 1.665319e-02	ci left: 5.576062e-02	ci right 5.669806e-02	k: 52292	n:930000
KS ci ratio: 2.771854e+00	ci left: 2.722345e-08	ci right 5.991000e-06	k: 1	n:930000
CLSTN1   930000 perm   567 sec   (1639 perm/sec)   p_kst 1.075269e-06   p_cons 5.622796e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.924332e-06	k: 0	n:940000
Cons ci ratio: 1.656060e-02	ci left: 5.578718e-02	ci right 5.671981e-02	k: 52877	n:940000
KS ci ratio: 2.771854e+00	ci left: 2.693384e-08	ci right 5.927266e-06	k: 1	n:940000
CLSTN1   940000 perm   577 sec   (1629 perm/sec)   p_kst 1.063830e-06   p_cons 5.625213e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.883023e-06	k: 0	n:950000
Cons ci ratio: 1.646824e-02	ci left: 5.582159e-02	ci right 5.674954e-02	k: 53470	n:950000
KS ci ratio: 2.771854e+00	ci left: 2.665032e-08	ci right 5.864874e-06	k: 1	n:950000
CLSTN1   950000 perm   587 sec   (1618 perm/sec)   p_kst 1.052632e-06   p_cons 5.628421e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.842575e-06	k: 0	n:960000
Cons ci ratio: 1.638591e-02	ci left: 5.580030e-02	ci right 5.672321e-02	k: 54010	n:960000
KS ci ratio: 2.771854e+00	ci left: 2.637272e-08	ci right 5.803781e-06	k: 1	n:960000
CLSTN1   960000 perm   597 sec   (1607 perm/sec)   p_kst 1.041667e-06   p_cons 5.626042e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.802961e-06	k: 0	n:970000
Cons ci ratio: 1.630354e-02	ci left: 5.578768e-02	ci right 5.670570e-02	k: 54558	n:970000
KS ci ratio: 2.771854e+00	ci left: 2.610083e-08	ci right 5.743949e-06	k: 1	n:970000
CLSTN1   970000 perm   607 sec   (1597 perm/sec)   p_kst 1.030928e-06   p_cons 5.624536e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.764156e-06	k: 0	n:980000
Cons ci ratio: 1.622443e-02	ci left: 5.576211e-02	ci right 5.667521e-02	k: 55093	n:980000
KS ci ratio: 2.771854e+00	ci left: 2.583450e-08	ci right 5.685337e-06	k: 1	n:980000
CLSTN1   980000 perm   617 sec   (1587 perm/sec)   p_kst 1.020408e-06   p_cons 5.621735e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.726134e-06	k: 0	n:990000
Cons ci ratio: 1.614077e-02	ci left: 5.577429e-02	ci right 5.668285e-02	k: 55665	n:990000
KS ci ratio: 2.771854e+00	ci left: 2.557354e-08	ci right 5.627910e-06	k: 1	n:990000
CLSTN1   990000 perm   628 sec   (1577 perm/sec)   p_kst 1.010101e-06   p_cons 5.622727e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.688873e-06	k: 0	n:1000000
Cons ci ratio: 1.606415e-02	ci left: 5.574840e-02	ci right 5.665218e-02	k: 56199	n:1000000
KS ci ratio: 2.771854e+00	ci left: 2.531781e-08	ci right 5.571631e-06	k: 1	n:1000000
CLSTN1   1000000 perm   638 sec   (1567 perm/sec)   p_kst 1.000000e-06   p_cons 5.619900e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.652349e-06	k: 0	n:1010000
Cons ci ratio: 1.598801e-02	ci left: 5.572696e-02	ci right 5.662608e-02	k: 56737	n:1010000
KS ci ratio: 2.771854e+00	ci left: 2.506714e-08	ci right 5.516466e-06	k: 1	n:1010000
CLSTN1   1010000 perm   649 sec   (1556 perm/sec)   p_kst 9.900990e-07   p_cons 5.617525e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.616542e-06	k: 0	n:1020000
Cons ci ratio: 1.590661e-02	ci left: 5.574796e-02	ci right 5.664279e-02	k: 57318	n:1020000
KS ci ratio: 2.771855e+00	ci left: 2.482138e-08	ci right 5.462383e-06	k: 1	n:1020000
CLSTN1   1020000 perm   660 sec   (1546 perm/sec)   p_kst 9.803922e-07   p_cons 5.619412e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.581430e-06	k: 0	n:1030000
Cons ci ratio: 1.583050e-02	ci left: 5.574148e-02	ci right 5.663189e-02	k: 57871	n:1030000
KS ci ratio: 2.771855e+00	ci left: 2.458040e-08	ci right 5.409351e-06	k: 1	n:1030000
CLSTN1   1030000 perm   671 sec   (1535 perm/sec)   p_kst 9.708738e-07   p_cons 5.618544e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.546993e-06	k: 0	n:1040000
Cons ci ratio: 1.575591e-02	ci left: 5.573226e-02	ci right 5.661829e-02	k: 58421	n:1040000
KS ci ratio: 2.771855e+00	ci left: 2.434405e-08	ci right 5.357338e-06	k: 1	n:1040000
CLSTN1   1040000 perm   683 sec   (1523 perm/sec)   p_kst 9.615385e-07   p_cons 5.617404e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.513212e-06	k: 0	n:1050000
Cons ci ratio: 1.568686e-02	ci left: 5.569286e-02	ci right 5.657435e-02	k: 58939	n:1050000
KS ci ratio: 2.771855e+00	ci left: 2.411220e-08	ci right 5.306315e-06	k: 1	n:1050000
CLSTN1   1050000 perm   693 sec   (1514 perm/sec)   p_kst 9.523810e-07   p_cons 5.613238e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.480069e-06	k: 0	n:1060000
Cons ci ratio: 1.561371e-02	ci left: 5.568805e-02	ci right 5.656532e-02	k: 59493	n:1060000
KS ci ratio: 2.771855e+00	ci left: 2.388472e-08	ci right 5.256256e-06	k: 1	n:1060000
CLSTN1   1060000 perm   705 sec   (1505 perm/sec)   p_kst 9.433962e-07   p_cons 5.612547e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.447545e-06	k: 0	n:1070000
Cons ci ratio: 1.554103e-02	ci left: 5.568707e-02	ci right 5.656020e-02	k: 60051	n:1070000
KS ci ratio: 2.771855e+00	ci left: 2.366150e-08	ci right 5.207132e-06	k: 1	n:1070000
CLSTN1   1070000 perm   716 sec   (1494 perm/sec)   p_kst 9.345794e-07   p_cons 5.612243e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.415623e-06	k: 0	n:1080000
Cons ci ratio: 1.547503e-02	ci left: 5.564736e-02	ci right 5.651613e-02	k: 60567	n:1080000
KS ci ratio: 2.771855e+00	ci left: 2.344241e-08	ci right 5.158918e-06	k: 1	n:1080000
CLSTN1   1080000 perm   728 sec   (1484 perm/sec)   p_kst 9.259259e-07   p_cons 5.608056e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.384287e-06	k: 0	n:1090000
Cons ci ratio: 1.540706e-02	ci left: 5.562759e-02	ci right 5.649220e-02	k: 61104	n:1090000
KS ci ratio: 2.771855e+00	ci left: 2.322735e-08	ci right 5.111589e-06	k: 1	n:1090000
CLSTN1   1090000 perm   739 sec   (1476 perm/sec)   p_kst 9.174312e-07   p_cons 5.605872e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.353521e-06	k: 0	n:1100000
Cons ci ratio: 1.533286e-02	ci left: 5.565710e-02	ci right 5.651797e-02	k: 61695	n:1100000
KS ci ratio: 2.771855e+00	ci left: 2.301619e-08	ci right 5.065120e-06	k: 1	n:1100000
CLSTN1   1100000 perm   750 sec   (1468 perm/sec)   p_kst 9.090909e-07   p_cons 5.608636e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.323309e-06	k: 0	n:1110000
Cons ci ratio: 1.526440e-02	ci left: 5.565377e-02	ci right 5.651071e-02	k: 62250	n:1110000
KS ci ratio: 2.771855e+00	ci left: 2.280884e-08	ci right 5.019488e-06	k: 1	n:1110000
CLSTN1   1110000 perm   761 sec   (1459 perm/sec)   p_kst 9.009009e-07   p_cons 5.608108e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.293637e-06	k: 0	n:1120000
Cons ci ratio: 1.519826e-02	ci left: 5.564072e-02	ci right 5.649372e-02	k: 62794	n:1120000
KS ci ratio: 2.771855e+00	ci left: 2.260519e-08	ci right 4.974671e-06	k: 1	n:1120000
CLSTN1   1120000 perm   772 sec   (1451 perm/sec)   p_kst 8.928571e-07   p_cons 5.606607e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.264490e-06	k: 0	n:1130000
Cons ci ratio: 1.513133e-02	ci left: 5.563938e-02	ci right 5.648856e-02	k: 63351	n:1130000
KS ci ratio: 2.771855e+00	ci left: 2.240514e-08	ci right 4.930648e-06	k: 1	n:1130000
CLSTN1   1130000 perm   783 sec   (1443 perm/sec)   p_kst 8.849558e-07   p_cons 5.606283e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.235854e-06	k: 0	n:1140000
Cons ci ratio: 1.506640e-02	ci left: 5.563020e-02	ci right 5.647557e-02	k: 63899	n:1140000
KS ci ratio: 2.771855e+00	ci left: 2.220860e-08	ci right 4.887397e-06	k: 1	n:1140000
CLSTN1   1140000 perm   795 sec   (1433 perm/sec)   p_kst 8.771930e-07   p_cons 5.605175e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.207716e-06	k: 0	n:1150000
Cons ci ratio: 1.499798e-02	ci left: 5.565151e-02	ci right 5.649333e-02	k: 64482	n:1150000
KS ci ratio: 2.771855e+00	ci left: 2.201548e-08	ci right 4.844898e-06	k: 1	n:1150000
CLSTN1   1150000 perm   808 sec   (1424 perm/sec)   p_kst 8.695652e-07   p_cons 5.607130e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.180063e-06	k: 0	n:1160000
Cons ci ratio: 1.493291e-02	ci left: 5.565529e-02	ci right 5.649348e-02	k: 65045	n:1160000
KS ci ratio: 2.771855e+00	ci left: 2.182570e-08	ci right 4.803131e-06	k: 1	n:1160000
CLSTN1   1160000 perm   819 sec   (1416 perm/sec)   p_kst 8.620690e-07   p_cons 5.607328e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.152883e-06	k: 0	n:1170000
Cons ci ratio: 1.486821e-02	ci left: 5.566241e-02	ci right 5.649705e-02	k: 65612	n:1170000
KS ci ratio: 2.771855e+00	ci left: 2.163915e-08	ci right 4.762079e-06	k: 1	n:1170000
CLSTN1   1170000 perm   831 sec   (1408 perm/sec)   p_kst 8.547009e-07   p_cons 5.607863e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.126164e-06	k: 0	n:1180000
Cons ci ratio: 1.480161e-02	ci left: 5.568885e-02	ci right 5.652011e-02	k: 66202	n:1180000
KS ci ratio: 2.771855e+00	ci left: 2.145577e-08	ci right 4.721723e-06	k: 1	n:1180000
CLSTN1   1180000 perm   843 sec   (1400 perm/sec)   p_kst 8.474576e-07   p_cons 5.610339e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.099894e-06	k: 0	n:1190000
Cons ci ratio: 1.473439e-02	ci left: 5.572574e-02	ci right 5.655374e-02	k: 66805	n:1190000
KS ci ratio: 2.771855e+00	ci left: 2.127547e-08	ci right 4.682044e-06	k: 1	n:1190000
CLSTN1   1190000 perm   855 sec   (1392 perm/sec)   p_kst 8.403361e-07   p_cons 5.613866e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.074061e-06	k: 0	n:1200000
Cons ci ratio: 1.467083e-02	ci left: 5.574208e-02	ci right 5.656673e-02	k: 67384	n:1200000
KS ci ratio: 2.771855e+00	ci left: 2.109817e-08	ci right 4.643027e-06	k: 1	n:1200000
CLSTN1   1200000 perm   867 sec   (1385 perm/sec)   p_kst 8.333333e-07   p_cons 5.615333e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.048656e-06	k: 0	n:1210000
Cons ci ratio: 1.461083e-02	ci left: 5.573840e-02	ci right 5.655959e-02	k: 67939	n:1210000
KS ci ratio: 2.771855e+00	ci left: 2.092381e-08	ci right 4.604655e-06	k: 1	n:1210000
CLSTN1   1210000 perm   878 sec   (1377 perm/sec)   p_kst 8.264463e-07   p_cons 5.614793e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.023667e-06	k: 0	n:1220000
Cons ci ratio: 1.454650e-02	ci left: 5.577155e-02	ci right 5.658958e-02	k: 68539	n:1220000
KS ci ratio: 2.771855e+00	ci left: 2.075230e-08	ci right 4.566912e-06	k: 1	n:1220000
CLSTN1   1220000 perm   891 sec   (1369 perm/sec)   p_kst 8.196721e-07   p_cons 5.617951e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.999084e-06	k: 0	n:1230000
Cons ci ratio: 1.448933e-02	ci left: 5.575798e-02	ci right 5.657257e-02	k: 69082	n:1230000
KS ci ratio: 2.771855e+00	ci left: 2.058358e-08	ci right 4.529783e-06	k: 1	n:1230000
CLSTN1   1230000 perm   903 sec   (1362 perm/sec)   p_kst 8.130081e-07   p_cons 5.616423e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.974898e-06	k: 0	n:1240000
Cons ci ratio: 1.442801e-02	ci left: 5.578000e-02	ci right 5.659143e-02	k: 69669	n:1240000
KS ci ratio: 2.771855e+00	ci left: 2.041759e-08	ci right 4.493253e-06	k: 1	n:1240000
CLSTN1   1240000 perm   916 sec   (1354 perm/sec)   p_kst 8.064516e-07   p_cons 5.618468e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.951099e-06	k: 0	n:1250000
Cons ci ratio: 1.437157e-02	ci left: 5.577138e-02	ci right 5.657948e-02	k: 70218	n:1250000
KS ci ratio: 2.771855e+00	ci left: 2.025425e-08	ci right 4.457307e-06	k: 1	n:1250000
CLSTN1   1250000 perm   928 sec   (1347 perm/sec)   p_kst 8.000000e-07   p_cons 5.617440e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.927678e-06	k: 0	n:1260000
Cons ci ratio: 1.431794e-02	ci left: 5.574708e-02	ci right 5.655179e-02	k: 70747	n:1260000
KS ci ratio: 2.771855e+00	ci left: 2.009350e-08	ci right 4.421931e-06	k: 1	n:1260000
CLSTN1   1260000 perm   940 sec   (1340 perm/sec)   p_kst 7.936508e-07   p_cons 5.614841e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.904625e-06	k: 0	n:1270000
Cons ci ratio: 1.426109e-02	ci left: 5.575142e-02	ci right 5.655297e-02	k: 71312	n:1270000
KS ci ratio: 2.771855e+00	ci left: 1.993528e-08	ci right 4.387113e-06	k: 1	n:1270000
CLSTN1   1270000 perm   953 sec   (1333 perm/sec)   p_kst 7.874016e-07   p_cons 5.615118e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.881933e-06	k: 0	n:1280000
Cons ci ratio: 1.420302e-02	ci left: 5.576971e-02	ci right 5.656824e-02	k: 71895	n:1280000
KS ci ratio: 2.771855e+00	ci left: 1.977954e-08	ci right 4.352839e-06	k: 1	n:1280000
CLSTN1   1280000 perm   966 sec   (1326 perm/sec)   p_kst 7.812500e-07   p_cons 5.616797e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.859592e-06	k: 0	n:1290000
Cons ci ratio: 1.415011e-02	ci left: 5.575450e-02	ci right 5.654982e-02	k: 72435	n:1290000
KS ci ratio: 2.771855e+00	ci left: 1.962621e-08	ci right 4.319096e-06	k: 1	n:1290000
CLSTN1   1290000 perm   978 sec   (1319 perm/sec)   p_kst 7.751938e-07   p_cons 5.615116e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.837596e-06	k: 0	n:1300000
Cons ci ratio: 1.409768e-02	ci left: 5.574030e-02	ci right 5.653244e-02	k: 72976	n:1300000
KS ci ratio: 2.771855e+00	ci left: 1.947524e-08	ci right 4.285872e-06	k: 1	n:1300000
CLSTN1   1300000 perm   990 sec   (1313 perm/sec)   p_kst 7.692308e-07   p_cons 5.613538e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.815935e-06	k: 0	n:1310000
Cons ci ratio: 1.403986e-02	ci left: 5.577122e-02	ci right 5.656052e-02	k: 73576	n:1310000
KS ci ratio: 2.771855e+00	ci left: 1.932657e-08	ci right 4.253155e-06	k: 1	n:1310000
CLSTN1   1310000 perm   1003 sec   (1306 perm/sec)   p_kst 7.633588e-07   p_cons 5.616489e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.794602e-06	k: 0	n:1320000
Cons ci ratio: 1.398295e-02	ci left: 5.580016e-02	ci right 5.658664e-02	k: 74174	n:1320000
KS ci ratio: 2.771855e+00	ci left: 1.918016e-08	ci right 4.220935e-06	k: 1	n:1320000
CLSTN1   1320000 perm   1016 sec   (1299 perm/sec)   p_kst 7.575758e-07   p_cons 5.619242e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.773590e-06	k: 0	n:1330000
Cons ci ratio: 1.392711e-02	ci left: 5.582567e-02	ci right 5.660935e-02	k: 74768	n:1330000
KS ci ratio: 2.771855e+00	ci left: 1.903595e-08	ci right 4.189198e-06	k: 1	n:1330000
CLSTN1   1330000 perm   1029 sec   (1292 perm/sec)   p_kst 7.518797e-07   p_cons 5.621654e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.752891e-06	k: 0	n:1340000
Cons ci ratio: 1.387253e-02	ci left: 5.584634e-02	ci right 5.662722e-02	k: 75356	n:1340000
KS ci ratio: 2.771855e+00	ci left: 1.889389e-08	ci right 4.157936e-06	k: 1	n:1340000
CLSTN1   1340000 perm   1043 sec   (1285 perm/sec)   p_kst 7.462687e-07   p_cons 5.623582e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.732500e-06	k: 0	n:1350000
Cons ci ratio: 1.381993e-02	ci left: 5.585638e-02	ci right 5.663441e-02	k: 75930	n:1350000
KS ci ratio: 2.771856e+00	ci left: 1.875393e-08	ci right 4.127136e-06	k: 1	n:1350000
CLSTN1   1350000 perm   1056 sec   (1278 perm/sec)   p_kst 7.407407e-07   p_cons 5.624444e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.712408e-06	k: 0	n:1360000
Cons ci ratio: 1.377117e-02	ci left: 5.584136e-02	ci right 5.661641e-02	k: 76470	n:1360000
KS ci ratio: 2.771856e+00	ci left: 1.861604e-08	ci right 4.096790e-06	k: 1	n:1360000
CLSTN1   1360000 perm   1069 sec   (1272 perm/sec)   p_kst 7.352941e-07   p_cons 5.622794e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.692609e-06	k: 0	n:1370000
Cons ci ratio: 1.371726e-02	ci left: 5.587022e-02	ci right 5.664261e-02	k: 77070	n:1370000
KS ci ratio: 2.771856e+00	ci left: 1.848015e-08	ci right 4.066886e-06	k: 1	n:1370000
CLSTN1   1370000 perm   1083 sec   (1265 perm/sec)   p_kst 7.299270e-07   p_cons 5.625547e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.673097e-06	k: 0	n:1380000
Cons ci ratio: 1.366491e-02	ci left: 5.589144e-02	ci right 5.666115e-02	k: 77660	n:1380000
KS ci ratio: 2.771856e+00	ci left: 1.834624e-08	ci right 4.037416e-06	k: 1	n:1380000
CLSTN1   1380000 perm   1098 sec   (1257 perm/sec)   p_kst 7.246377e-07   p_cons 5.627536e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.653867e-06	k: 0	n:1390000
Cons ci ratio: 1.361307e-02	ci left: 5.591307e-02	ci right 5.668014e-02	k: 78251	n:1390000
KS ci ratio: 2.771856e+00	ci left: 1.821425e-08	ci right 4.008370e-06	k: 1	n:1390000
CLSTN1   1390000 perm   1111 sec   (1251 perm/sec)   p_kst 7.194245e-07   p_cons 5.629568e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.634910e-06	k: 0	n:1400000
Cons ci ratio: 1.356436e-02	ci left: 5.591447e-02	ci right 5.667879e-02	k: 78814	n:1400000
KS ci ratio: 2.771856e+00	ci left: 1.808415e-08	ci right 3.979739e-06	k: 1	n:1400000
CLSTN1   1400000 perm   1125 sec   (1244 perm/sec)   p_kst 7.142857e-07   p_cons 5.629571e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.616223e-06	k: 0	n:1410000
Cons ci ratio: 1.351960e-02	ci left: 5.588899e-02	ci right 5.665042e-02	k: 79339	n:1410000
KS ci ratio: 2.771856e+00	ci left: 1.795589e-08	ci right 3.951514e-06	k: 1	n:1410000
CLSTN1   1410000 perm   1138 sec   (1239 perm/sec)   p_kst 7.092199e-07   p_cons 5.626879e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.597799e-06	k: 0	n:1420000
Cons ci ratio: 1.347144e-02	ci left: 5.589406e-02	ci right 5.665282e-02	k: 79907	n:1420000
KS ci ratio: 2.771856e+00	ci left: 1.782944e-08	ci right 3.923686e-06	k: 1	n:1420000
CLSTN1   1420000 perm   1152 sec   (1233 perm/sec)   p_kst 7.042254e-07   p_cons 5.627254e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.579633e-06	k: 0	n:1430000
Cons ci ratio: 1.342405e-02	ci left: 5.589697e-02	ci right 5.665308e-02	k: 80472	n:1430000
KS ci ratio: 2.771856e+00	ci left: 1.770476e-08	ci right 3.896248e-06	k: 1	n:1430000
CLSTN1   1430000 perm   1166 sec   (1227 perm/sec)   p_kst 6.993007e-07   p_cons 5.627413e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.561719e-06	k: 0	n:1440000
Cons ci ratio: 1.337987e-02	ci left: 5.587838e-02	ci right 5.663174e-02	k: 81006	n:1440000
KS ci ratio: 2.771856e+00	ci left: 1.758181e-08	ci right 3.869191e-06	k: 1	n:1440000
CLSTN1   1440000 perm   1179 sec   (1221 perm/sec)   p_kst 6.944444e-07   p_cons 5.625417e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.544052e-06	k: 0	n:1450000
Cons ci ratio: 1.333362e-02	ci left: 5.587999e-02	ci right 5.663075e-02	k: 81569	n:1450000
KS ci ratio: 2.771856e+00	ci left: 1.746056e-08	ci right 3.842507e-06	k: 1	n:1450000
CLSTN1   1450000 perm   1192 sec   (1216 perm/sec)   p_kst 6.896552e-07   p_cons 5.625448e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.526627e-06	k: 0	n:1460000
Cons ci ratio: 1.329050e-02	ci left: 5.586042e-02	ci right 5.660847e-02	k: 82101	n:1460000
KS ci ratio: 2.771856e+00	ci left: 1.734096e-08	ci right 3.816188e-06	k: 1	n:1460000
CLSTN1   1460000 perm   1207 sec   (1210 perm/sec)   p_kst 6.849315e-07   p_cons 5.623356e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.509439e-06	k: 0	n:1470000
Cons ci ratio: 1.324380e-02	ci left: 5.587299e-02	ci right 5.661856e-02	k: 82680	n:1470000
KS ci ratio: 2.771856e+00	ci left: 1.722300e-08	ci right 3.790228e-06	k: 1	n:1470000
CLSTN1   1470000 perm   1222 sec   (1203 perm/sec)   p_kst 6.802721e-07   p_cons 5.624490e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.492483e-06	k: 0	n:1480000
Cons ci ratio: 1.320465e-02	ci left: 5.582881e-02	ci right 5.657157e-02	k: 83175	n:1480000
KS ci ratio: 2.771856e+00	ci left: 1.710663e-08	ci right 3.764618e-06	k: 1	n:1480000
CLSTN1   1480000 perm   1236 sec   (1197 perm/sec)   p_kst 6.756757e-07   p_cons 5.619932e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.475755e-06	k: 0	n:1490000
Cons ci ratio: 1.315843e-02	ci left: 5.584478e-02	ci right 5.658513e-02	k: 83759	n:1490000
KS ci ratio: 2.771856e+00	ci left: 1.699182e-08	ci right 3.739352e-06	k: 1	n:1490000
CLSTN1   1490000 perm   1250 sec   (1192 perm/sec)   p_kst 6.711409e-07   p_cons 5.621409e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.459250e-06	k: 0	n:1500000
Cons ci ratio: 1.311377e-02	ci left: 5.585190e-02	ci right 5.658981e-02	k: 84330	n:1500000
KS ci ratio: 2.771856e+00	ci left: 1.687854e-08	ci right 3.714423e-06	k: 1	n:1500000
CLSTN1   1500000 perm   1264 sec   (1187 perm/sec)   p_kst 6.666667e-07   p_cons 5.622000e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.442964e-06	k: 0	n:1510000
Cons ci ratio: 1.306890e-02	ci left: 5.586421e-02	ci right 5.659974e-02	k: 84909	n:1510000
KS ci ratio: 2.771856e+00	ci left: 1.676676e-08	ci right 3.689824e-06	k: 1	n:1510000
CLSTN1   1510000 perm   1279 sec   (1181 perm/sec)   p_kst 6.622517e-07   p_cons 5.623113e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.426891e-06	k: 0	n:1520000
Cons ci ratio: 1.302563e-02	ci left: 5.586718e-02	ci right 5.660030e-02	k: 85474	n:1520000
KS ci ratio: 2.771856e+00	ci left: 1.665645e-08	ci right 3.665549e-06	k: 1	n:1520000
CLSTN1   1520000 perm   1294 sec   (1175 perm/sec)   p_kst 6.578947e-07   p_cons 5.623289e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.411029e-06	k: 0	n:1530000
Cons ci ratio: 1.298038e-02	ci left: 5.588967e-02	ci right 5.662051e-02	k: 86069	n:1530000
KS ci ratio: 2.771856e+00	ci left: 1.654759e-08	ci right 3.641592e-06	k: 1	n:1530000
CLSTN1   1530000 perm   1309 sec   (1169 perm/sec)   p_kst 6.535948e-07   p_cons 5.625425e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.395373e-06	k: 0	n:1540000
Cons ci ratio: 1.293544e-02	ci left: 5.591316e-02	ci right 5.664176e-02	k: 86666	n:1540000
KS ci ratio: 2.771856e+00	ci left: 1.644014e-08	ci right 3.617945e-06	k: 1	n:1540000
CLSTN1   1540000 perm   1324 sec   (1164 perm/sec)   p_kst 6.493506e-07   p_cons 5.627662e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.379919e-06	k: 0	n:1550000
Cons ci ratio: 1.289183e-02	ci left: 5.592927e-02	ci right 5.665561e-02	k: 87252	n:1550000
KS ci ratio: 2.771856e+00	ci left: 1.633407e-08	ci right 3.594603e-06	k: 1	n:1550000
CLSTN1   1550000 perm   1338 sec   (1158 perm/sec)   p_kst 6.451613e-07   p_cons 5.629161e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.364664e-06	k: 0	n:1560000
Cons ci ratio: 1.285199e-02	ci left: 5.591771e-02	ci right 5.664163e-02	k: 87795	n:1560000
KS ci ratio: 2.771856e+00	ci left: 1.622936e-08	ci right 3.571561e-06	k: 1	n:1560000
CLSTN1   1560000 perm   1354 sec   (1152 perm/sec)   p_kst 6.410256e-07   p_cons 5.627885e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.349602e-06	k: 0	n:1570000
Cons ci ratio: 1.280936e-02	ci left: 5.593233e-02	ci right 5.665402e-02	k: 88379	n:1570000
KS ci ratio: 2.771856e+00	ci left: 1.612599e-08	ci right 3.548812e-06	k: 1	n:1570000
CLSTN1   1570000 perm   1368 sec   (1147 perm/sec)   p_kst 6.369427e-07   p_cons 5.629236e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.334731e-06	k: 0	n:1580000
Cons ci ratio: 1.329042e-02	ci left: 5.183980e-02	ci right 5.253400e-02	k: 82454	n:1580000
KS ci ratio: 2.771856e+00	ci left: 1.602393e-08	ci right 3.526351e-06	k: 1	n:1580000
CLSTN1   1580000 perm   1383 sec   (1142 perm/sec)   p_kst 6.329114e-07   p_cons 5.218608e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.320047e-06	k: 0	n:1590000
Cons ci ratio: 1.324855e-02	ci left: 5.184097e-02	ci right 5.253299e-02	k: 82976	n:1590000
KS ci ratio: 2.771856e+00	ci left: 1.592315e-08	ci right 3.504173e-06	k: 1	n:1590000
CLSTN1   1590000 perm   1398 sec   (1137 perm/sec)   p_kst 6.289308e-07   p_cons 5.218616e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.305547e-06	k: 0	n:1600000
Cons ci ratio: 1.320599e-02	ci left: 5.185024e-02	ci right 5.254013e-02	k: 83511	n:1600000
KS ci ratio: 2.771856e+00	ci left: 1.582363e-08	ci right 3.482272e-06	k: 1	n:1600000
CLSTN1   1600000 perm   1414 sec   (1132 perm/sec)   p_kst 6.250000e-07   p_cons 5.219438e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.291227e-06	k: 0	n:1610000
Cons ci ratio: 1.316375e-02	ci left: 5.186001e-02	ci right 5.254781e-02	k: 84047	n:1610000
KS ci ratio: 2.771856e+00	ci left: 1.572535e-08	ci right 3.460643e-06	k: 1	n:1610000
CLSTN1   1610000 perm   1429 sec   (1126 perm/sec)   p_kst 6.211180e-07   p_cons 5.220311e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.277083e-06	k: 0	n:1620000
Cons ci ratio: 1.312315e-02	ci left: 5.186043e-02	ci right 5.254611e-02	k: 84568	n:1620000
KS ci ratio: 2.771856e+00	ci left: 1.562828e-08	ci right 3.439281e-06	k: 1	n:1620000
CLSTN1   1620000 perm   1444 sec   (1122 perm/sec)   p_kst 6.172840e-07   p_cons 5.220247e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.263114e-06	k: 0	n:1630000
Cons ci ratio: 1.308592e-02	ci left: 5.183823e-02	ci right 5.252165e-02	k: 85052	n:1630000
KS ci ratio: 2.771856e+00	ci left: 1.553240e-08	ci right 3.418181e-06	k: 1	n:1630000
CLSTN1   1630000 perm   1459 sec   (1117 perm/sec)   p_kst 6.134969e-07   p_cons 5.217914e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.249314e-06	k: 0	n:1640000
Cons ci ratio: 1.304546e-02	ci left: 5.184304e-02	ci right 5.252439e-02	k: 85580	n:1640000
KS ci ratio: 2.771856e+00	ci left: 1.543769e-08	ci right 3.397339e-06	k: 1	n:1640000
CLSTN1   1640000 perm   1475 sec   (1112 perm/sec)   p_kst 6.097561e-07   p_cons 5.218293e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.235682e-06	k: 0	n:1650000
Cons ci ratio: 1.300649e-02	ci left: 5.183934e-02	ci right 5.251860e-02	k: 86094	n:1650000
KS ci ratio: 2.771856e+00	ci left: 1.534413e-08	ci right 3.376749e-06	k: 1	n:1650000
CLSTN1   1650000 perm   1491 sec   (1107 perm/sec)   p_kst 6.060606e-07   p_cons 5.217818e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.222214e-06	k: 0	n:1660000
Cons ci ratio: 1.296850e-02	ci left: 5.183088e-02	ci right 5.250803e-02	k: 86600	n:1660000
KS ci ratio: 2.771856e+00	ci left: 1.525169e-08	ci right 3.356407e-06	k: 1	n:1660000
CLSTN1   1660000 perm   1513 sec   (1097 perm/sec)   p_kst 6.024096e-07   p_cons 5.216867e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.208907e-06	k: 0	n:1670000
Cons ci ratio: 1.293014e-02	ci left: 5.182790e-02	ci right 5.250299e-02	k: 87115	n:1670000
KS ci ratio: 2.771856e+00	ci left: 1.516036e-08	ci right 3.336309e-06	k: 1	n:1670000
CLSTN1   1670000 perm   1532 sec   (1090 perm/sec)   p_kst 5.988024e-07   p_cons 5.216467e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.195759e-06	k: 0	n:1680000
Cons ci ratio: 1.289390e-02	ci left: 5.181131e-02	ci right 5.248428e-02	k: 87607	n:1680000
KS ci ratio: 2.771856e+00	ci left: 1.507012e-08	ci right 3.316450e-06	k: 1	n:1680000
CLSTN1   1680000 perm   1547 sec   (1086 perm/sec)   p_kst 5.952381e-07   p_cons 5.214702e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.182767e-06	k: 0	n:1690000
Cons ci ratio: 1.285658e-02	ci left: 5.180554e-02	ci right 5.247647e-02	k: 88117	n:1690000
KS ci ratio: 2.771856e+00	ci left: 1.498095e-08	ci right 3.296826e-06	k: 1	n:1690000
CLSTN1   1690000 perm   1563 sec   (1081 perm/sec)   p_kst 5.917160e-07   p_cons 5.214024e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.169927e-06	k: 0	n:1700000
Cons ci ratio: 1.281470e-02	ci left: 5.183737e-02	ci right 5.250651e-02	k: 88691	n:1700000
KS ci ratio: 2.771856e+00	ci left: 1.489283e-08	ci right 3.277433e-06	k: 1	n:1700000
CLSTN1   1700000 perm   1579 sec   (1077 perm/sec)   p_kst 5.882353e-07   p_cons 5.217118e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.157237e-06	k: 0	n:1710000
Cons ci ratio: 1.277482e-02	ci left: 5.185659e-02	ci right 5.252388e-02	k: 89244	n:1710000
KS ci ratio: 2.771856e+00	ci left: 1.480574e-08	ci right 3.258267e-06	k: 1	n:1710000
CLSTN1   1710000 perm   1595 sec   (1072 perm/sec)   p_kst 5.847953e-07   p_cons 5.218947e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.144695e-06	k: 0	n:1720000
Cons ci ratio: 1.273582e-02	ci left: 5.187153e-02	ci right 5.253696e-02	k: 89790	n:1720000
KS ci ratio: 2.771856e+00	ci left: 1.471966e-08	ci right 3.239323e-06	k: 1	n:1720000
CLSTN1   1720000 perm   1611 sec   (1067 perm/sec)   p_kst 5.813953e-07   p_cons 5.220349e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.132298e-06	k: 0	n:1730000
Cons ci ratio: 1.269941e-02	ci left: 5.186901e-02	ci right 5.253249e-02	k: 90306	n:1730000
KS ci ratio: 2.771856e+00	ci left: 1.463457e-08	ci right 3.220599e-06	k: 1	n:1730000
CLSTN1   1730000 perm   1628 sec   (1063 perm/sec)   p_kst 5.780347e-07   p_cons 5.220000e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.120043e-06	k: 0	n:1740000
Cons ci ratio: 1.266183e-02	ci left: 5.187798e-02	ci right 5.253960e-02	k: 90842	n:1740000
KS ci ratio: 2.771856e+00	ci left: 1.455046e-08	ci right 3.202090e-06	k: 1	n:1740000
CLSTN1   1740000 perm   1644 sec   (1059 perm/sec)   p_kst 5.747126e-07   p_cons 5.220805e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.107929e-06	k: 0	n:1750000
Cons ci ratio: 1.262532e-02	ci left: 5.188116e-02	ci right 5.254089e-02	k: 91368	n:1750000
KS ci ratio: 2.771856e+00	ci left: 1.446732e-08	ci right 3.183792e-06	k: 1	n:1750000
CLSTN1   1750000 perm   1660 sec   (1054 perm/sec)   p_kst 5.714286e-07   p_cons 5.221029e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.095952e-06	k: 0	n:1760000
Cons ci ratio: 1.258934e-02	ci left: 5.188260e-02	ci right 5.254046e-02	k: 91891	n:1760000
KS ci ratio: 2.771856e+00	ci left: 1.438512e-08	ci right 3.165702e-06	k: 1	n:1760000
CLSTN1   1760000 perm   1677 sec   (1050 perm/sec)   p_kst 5.681818e-07   p_cons 5.221080e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.084111e-06	k: 0	n:1770000
Cons ci ratio: 1.255567e-02	ci left: 5.186826e-02	ci right 5.252417e-02	k: 92386	n:1770000
KS ci ratio: 2.771856e+00	ci left: 1.430385e-08	ci right 3.147817e-06	k: 1	n:1770000
CLSTN1   1770000 perm   1693 sec   (1045 perm/sec)   p_kst 5.649718e-07   p_cons 5.219548e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.072402e-06	k: 0	n:1780000
Cons ci ratio: 1.251814e-02	ci left: 5.188657e-02	ci right 5.254073e-02	k: 92939	n:1780000
KS ci ratio: 2.771856e+00	ci left: 1.422349e-08	ci right 3.130133e-06	k: 1	n:1780000
CLSTN1   1780000 perm   1710 sec   (1041 perm/sec)   p_kst 5.617978e-07   p_cons 5.221292e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.060824e-06	k: 0	n:1790000
Cons ci ratio: 1.248384e-02	ci left: 5.188184e-02	ci right 5.253414e-02	k: 93451	n:1790000
KS ci ratio: 2.771856e+00	ci left: 1.414403e-08	ci right 3.112646e-06	k: 1	n:1790000
CLSTN1   1790000 perm   1726 sec   (1037 perm/sec)   p_kst 5.586592e-07   p_cons 5.220726e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.049375e-06	k: 0	n:1800000
Cons ci ratio: 1.244772e-02	ci left: 5.189378e-02	ci right 5.254433e-02	k: 93993	n:1800000
KS ci ratio: 2.771856e+00	ci left: 1.406545e-08	ci right 3.095354e-06	k: 1	n:1800000
CLSTN1   1800000 perm   1743 sec   (1033 perm/sec)   p_kst 5.555556e-07   p_cons 5.221833e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.038053e-06	k: 0	n:1810000
Cons ci ratio: 1.241531e-02	ci left: 5.187860e-02	ci right 5.252725e-02	k: 94486	n:1810000
KS ci ratio: 2.771856e+00	ci left: 1.398774e-08	ci right 3.078252e-06	k: 1	n:1810000
CLSTN1   1810000 perm   1761 sec   (1028 perm/sec)   p_kst 5.524862e-07   p_cons 5.220221e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.026855e-06	k: 0	n:1820000
Cons ci ratio: 1.237896e-02	ci left: 5.189701e-02	ci right 5.254398e-02	k: 95040	n:1820000
KS ci ratio: 2.771856e+00	ci left: 1.391088e-08	ci right 3.061339e-06	k: 1	n:1820000
CLSTN1   1820000 perm   1778 sec   (1024 perm/sec)   p_kst 5.494505e-07   p_cons 5.221978e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.015779e-06	k: 0	n:1830000
Cons ci ratio: 1.234272e-02	ci left: 5.191685e-02	ci right 5.256216e-02	k: 95597	n:1830000
KS ci ratio: 2.771856e+00	ci left: 1.383487e-08	ci right 3.044610e-06	k: 1	n:1830000
CLSTN1   1830000 perm   1796 sec   (1019 perm/sec)   p_kst 5.464481e-07   p_cons 5.223880e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.004824e-06	k: 0	n:1840000
Cons ci ratio: 1.230903e-02	ci left: 5.191860e-02	ci right 5.256216e-02	k: 96121	n:1840000
KS ci ratio: 2.771856e+00	ci left: 1.375968e-08	ci right 3.028063e-06	k: 1	n:1840000
CLSTN1   1840000 perm   1813 sec   (1015 perm/sec)   p_kst 5.434783e-07   p_cons 5.223967e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.993987e-06	k: 0	n:1850000
Cons ci ratio: 1.227534e-02	ci left: 5.192249e-02	ci right 5.256432e-02	k: 96649	n:1850000
KS ci ratio: 2.771856e+00	ci left: 1.368530e-08	ci right 3.011695e-06	k: 1	n:1850000
CLSTN1   1850000 perm   1830 sec   (1011 perm/sec)   p_kst 5.405405e-07   p_cons 5.224270e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.983267e-06	k: 0	n:1860000
Cons ci ratio: 1.224319e-02	ci left: 5.191615e-02	ci right 5.255621e-02	k: 97158	n:1860000
KS ci ratio: 2.771856e+00	ci left: 1.361172e-08	ci right 2.995504e-06	k: 1	n:1860000
CLSTN1   1860000 perm   1848 sec   (1007 perm/sec)   p_kst 5.376344e-07   p_cons 5.223548e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.972661e-06	k: 0	n:1870000
Cons ci ratio: 1.220984e-02	ci left: 5.192162e-02	ci right 5.255999e-02	k: 97689	n:1870000
KS ci ratio: 2.771856e+00	ci left: 1.353893e-08	ci right 2.979485e-06	k: 1	n:1870000
CLSTN1   1870000 perm   1866 sec   (1002 perm/sec)   p_kst 5.347594e-07   p_cons 5.224011e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.962168e-06	k: 0	n:1880000
Cons ci ratio: 1.217813e-02	ci left: 5.191589e-02	ci right 5.255252e-02	k: 98199	n:1880000
KS ci ratio: 2.771856e+00	ci left: 1.346692e-08	ci right 2.963636e-06	k: 1	n:1880000
CLSTN1   1880000 perm   1884 sec   (998 perm/sec)   p_kst 5.319149e-07   p_cons 5.223351e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.951786e-06	k: 0	n:1890000
Cons ci ratio: 1.214285e-02	ci left: 5.194135e-02	ci right 5.257643e-02	k: 98768	n:1890000
KS ci ratio: 2.771856e+00	ci left: 1.339567e-08	ci right 2.947956e-06	k: 1	n:1890000
CLSTN1   1890000 perm   1902 sec   (994 perm/sec)   p_kst 5.291005e-07   p_cons 5.225820e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.941514e-06	k: 0	n:1900000
Cons ci ratio: 1.211031e-02	ci left: 5.194660e-02	ci right 5.258003e-02	k: 99299	n:1900000
KS ci ratio: 2.771856e+00	ci left: 1.332516e-08	ci right 2.932440e-06	k: 1	n:1900000
CLSTN1   1900000 perm   1920 sec   (990 perm/sec)   p_kst 5.263158e-07   p_cons 5.226263e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.931349e-06	k: 0	n:1910000
Cons ci ratio: 1.207784e-02	ci left: 5.195336e-02	ci right 5.258517e-02	k: 99833	n:1910000
KS ci ratio: 2.771856e+00	ci left: 1.325540e-08	ci right 2.917087e-06	k: 1	n:1910000
CLSTN1   1910000 perm   1939 sec   (985 perm/sec)   p_kst 5.235602e-07   p_cons 5.226859e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.921290e-06	k: 0	n:1920000
Cons ci ratio: 1.204778e-02	ci left: 5.194240e-02	ci right 5.257249e-02	k: 100333	n:1920000
KS ci ratio: 2.771856e+00	ci left: 1.318636e-08	ci right 2.901894e-06	k: 1	n:1920000
CLSTN1   1920000 perm   1959 sec   (980 perm/sec)   p_kst 5.208333e-07   p_cons 5.225677e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.911335e-06	k: 0	n:1930000
Cons ci ratio: 1.201789e-02	ci left: 5.193207e-02	ci right 5.256046e-02	k: 100834	n:1930000
KS ci ratio: 2.771856e+00	ci left: 1.311804e-08	ci right 2.886858e-06	k: 1	n:1930000
CLSTN1   1930000 perm   1978 sec   (976 perm/sec)   p_kst 5.181347e-07   p_cons 5.224560e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.901482e-06	k: 0	n:1940000
Cons ci ratio: 1.198671e-02	ci left: 5.193419e-02	ci right 5.256096e-02	k: 101359	n:1940000
KS ci ratio: 2.771856e+00	ci left: 1.305042e-08	ci right 2.871978e-06	k: 1	n:1940000
CLSTN1   1940000 perm   1996 sec   (972 perm/sec)   p_kst 5.154639e-07   p_cons 5.224691e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.891731e-06	k: 0	n:1950000
Cons ci ratio: 1.195504e-02	ci left: 5.194242e-02	ci right 5.256763e-02	k: 101896	n:1950000
KS ci ratio: 2.771856e+00	ci left: 1.298349e-08	ci right 2.857250e-06	k: 1	n:1950000
CLSTN1   1950000 perm   2015 sec   (968 perm/sec)   p_kst 5.128205e-07   p_cons 5.225436e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.882080e-06	k: 0	n:1960000
Cons ci ratio: 1.192380e-02	ci left: 5.194904e-02	ci right 5.257269e-02	k: 102430	n:1960000
KS ci ratio: 2.771856e+00	ci left: 1.291725e-08	ci right 2.842672e-06	k: 1	n:1960000
CLSTN1   1960000 perm   2034 sec   (964 perm/sec)   p_kst 5.102041e-07   p_cons 5.226020e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.872526e-06	k: 0	n:1970000
Cons ci ratio: 1.189177e-02	ci left: 5.196421e-02	ci right 5.258635e-02	k: 102981	n:1970000
KS ci ratio: 2.771856e+00	ci left: 1.285168e-08	ci right 2.828242e-06	k: 1	n:1970000
CLSTN1   1970000 perm   2053 sec   (960 perm/sec)   p_kst 5.076142e-07   p_cons 5.227462e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.863069e-06	k: 0	n:1980000
Cons ci ratio: 1.186005e-02	ci left: 5.197872e-02	ci right 5.259936e-02	k: 103531	n:1980000
KS ci ratio: 2.771856e+00	ci left: 1.278677e-08	ci right 2.813958e-06	k: 1	n:1980000
CLSTN1   1980000 perm   2071 sec   (956 perm/sec)   p_kst 5.050505e-07   p_cons 5.228838e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.853707e-06	k: 0	n:1990000
Cons ci ratio: 1.182955e-02	ci left: 5.198507e-02	ci right 5.260418e-02	k: 104065	n:1990000
KS ci ratio: 2.771856e+00	ci left: 1.272252e-08	ci right 2.799818e-06	k: 1	n:1990000
CLSTN1   1990000 perm   2090 sec   (952 perm/sec)   p_kst 5.025126e-07   p_cons 5.229397e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.844438e-06	k: 0	n:2000000
Cons ci ratio: 1.179863e-02	ci left: 5.199684e-02	ci right 5.261446e-02	k: 104610	n:2000000
KS ci ratio: 2.771857e+00	ci left: 1.265890e-08	ci right 2.785819e-06	k: 1	n:2000000
CLSTN1   2000000 perm   2110 sec   (948 perm/sec)   p_kst 5.000000e-07   p_cons 5.230500e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.835262e-06	k: 0	n:2010000
Cons ci ratio: 1.176889e-02	ci left: 5.200056e-02	ci right 5.261665e-02	k: 105139	n:2010000
KS ci ratio: 2.771857e+00	ci left: 1.259592e-08	ci right 2.771959e-06	k: 1	n:2010000
CLSTN1   2010000 perm   2128 sec   (945 perm/sec)   p_kst 4.975124e-07   p_cons 5.230796e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.826176e-06	k: 0	n:2020000
Cons ci ratio: 1.174014e-02	ci left: 5.199782e-02	ci right 5.261237e-02	k: 105655	n:2020000
KS ci ratio: 2.771857e+00	ci left: 1.253357e-08	ci right 2.758236e-06	k: 1	n:2020000
CLSTN1   2020000 perm   2147 sec   (941 perm/sec)   p_kst 4.950495e-07   p_cons 5.230446e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.817180e-06	k: 0	n:2030000
Cons ci ratio: 1.170968e-02	ci left: 5.201133e-02	ci right 5.262443e-02	k: 106204	n:2030000
KS ci ratio: 2.771857e+00	ci left: 1.247183e-08	ci right 2.744649e-06	k: 1	n:2030000
CLSTN1   2030000 perm   2166 sec   (937 perm/sec)   p_kst 4.926108e-07   p_cons 5.231724e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.808273e-06	k: 0	n:2040000
Cons ci ratio: 1.167795e-02	ci left: 5.203741e-02	ci right 5.264915e-02	k: 106779	n:2040000
KS ci ratio: 2.771857e+00	ci left: 1.241069e-08	ci right 2.731195e-06	k: 1	n:2040000
CLSTN1   2040000 perm   2186 sec   (933 perm/sec)   p_kst 4.901961e-07   p_cons 5.234265e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.799452e-06	k: 0	n:2050000
Cons ci ratio: 1.165049e-02	ci left: 5.202919e-02	ci right 5.263939e-02	k: 107284	n:2050000
KS ci ratio: 2.771857e+00	ci left: 1.235015e-08	ci right 2.717872e-06	k: 1	n:2050000
CLSTN1   2050000 perm   2205 sec   (930 perm/sec)   p_kst 4.878049e-07   p_cons 5.233366e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.790717e-06	k: 0	n:2060000
Cons ci ratio: 1.162026e-02	ci left: 5.204623e-02	ci right 5.265503e-02	k: 107841	n:2060000
KS ci ratio: 2.771857e+00	ci left: 1.229020e-08	ci right 2.704678e-06	k: 1	n:2060000
CLSTN1   2060000 perm   2228 sec   (925 perm/sec)   p_kst 4.854369e-07   p_cons 5.235000e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.782066e-06	k: 0	n:2070000
Cons ci ratio: 1.159207e-02	ci left: 5.204769e-02	ci right 5.265502e-02	k: 108366	n:2070000
KS ci ratio: 2.771857e+00	ci left: 1.223083e-08	ci right 2.691612e-06	k: 1	n:2070000
CLSTN1   2070000 perm   2248 sec   (921 perm/sec)   p_kst 4.830918e-07   p_cons 5.235072e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.773498e-06	k: 0	n:2080000
Cons ci ratio: 1.156560e-02	ci left: 5.203619e-02	ci right 5.264198e-02	k: 108864	n:2080000
KS ci ratio: 2.771857e+00	ci left: 1.217202e-08	ci right 2.678672e-06	k: 1	n:2080000
CLSTN1   2080000 perm   2269 sec   (917 perm/sec)   p_kst 4.807692e-07   p_cons 5.233846e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.765013e-06	k: 0	n:2090000
Cons ci ratio: 1.153843e-02	ci left: 5.203243e-02	ci right 5.263675e-02	k: 109378	n:2090000
KS ci ratio: 2.771857e+00	ci left: 1.211378e-08	ci right 2.665855e-06	k: 1	n:2090000
CLSTN1   2090000 perm   2288 sec   (913 perm/sec)   p_kst 4.784689e-07   p_cons 5.233397e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.756608e-06	k: 0	n:2100000
Cons ci ratio: 1.151127e-02	ci left: 5.203014e-02	ci right 5.263300e-02	k: 109895	n:2100000
KS ci ratio: 2.771857e+00	ci left: 1.205610e-08	ci right 2.653161e-06	k: 1	n:2100000
CLSTN1   2100000 perm   2308 sec   (910 perm/sec)   p_kst 4.761905e-07   p_cons 5.233095e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.748283e-06	k: 0	n:2110000
Cons ci ratio: 1.148502e-02	ci left: 5.202172e-02	ci right 5.262311e-02	k: 110399	n:2110000
KS ci ratio: 2.771857e+00	ci left: 1.199896e-08	ci right 2.640586e-06	k: 1	n:2110000
CLSTN1   2110000 perm   2328 sec   (906 perm/sec)   p_kst 4.739336e-07   p_cons 5.232180e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.740036e-06	k: 0	n:2120000
Cons ci ratio: 1.145742e-02	ci left: 5.202656e-02	ci right 5.262655e-02	k: 110931	n:2120000
KS ci ratio: 2.771857e+00	ci left: 1.194236e-08	ci right 2.628131e-06	k: 1	n:2120000
CLSTN1   2120000 perm   2348 sec   (903 perm/sec)   p_kst 4.716981e-07   p_cons 5.232594e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.731867e-06	k: 0	n:2130000
Cons ci ratio: 1.143029e-02	ci left: 5.202902e-02	ci right 5.262760e-02	k: 111458	n:2130000
KS ci ratio: 2.771857e+00	ci left: 1.188629e-08	ci right 2.615792e-06	k: 1	n:2130000
CLSTN1   2130000 perm   2367 sec   (900 perm/sec)   p_kst 4.694836e-07   p_cons 5.232770e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.723774e-06	k: 0	n:2140000
Cons ci ratio: 1.140411e-02	ci left: 5.202493e-02	ci right 5.262208e-02	k: 111971	n:2140000
KS ci ratio: 2.771857e+00	ci left: 1.183075e-08	ci right 2.603569e-06	k: 1	n:2140000
CLSTN1   2140000 perm   2387 sec   (897 perm/sec)   p_kst 4.672897e-07   p_cons 5.232290e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.715756e-06	k: 0	n:2150000
Cons ci ratio: 1.137821e-02	ci left: 5.201995e-02	ci right 5.261568e-02	k: 112482	n:2150000
KS ci ratio: 2.771857e+00	ci left: 1.177572e-08	ci right 2.591459e-06	k: 1	n:2150000
CLSTN1   2150000 perm   2408 sec   (893 perm/sec)   p_kst 4.651163e-07   p_cons 5.231721e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.707813e-06	k: 0	n:2160000
Cons ci ratio: 1.135227e-02	ci left: 5.201686e-02	ci right 5.261119e-02	k: 112997	n:2160000
KS ci ratio: 2.771857e+00	ci left: 1.172121e-08	ci right 2.579462e-06	k: 1	n:2160000
CLSTN1   2160000 perm   2428 sec   (890 perm/sec)   p_kst 4.629630e-07   p_cons 5.231343e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.699943e-06	k: 0	n:2170000
Cons ci ratio: 1.132494e-02	ci left: 5.202759e-02	ci right 5.262061e-02	k: 113542	n:2170000
KS ci ratio: 2.771857e+00	ci left: 1.166719e-08	ci right 2.567575e-06	k: 1	n:2170000
CLSTN1   2170000 perm   2449 sec   (886 perm/sec)   p_kst 4.608295e-07   p_cons 5.232350e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.692145e-06	k: 0	n:2180000
Cons ci ratio: 1.129978e-02	ci left: 5.202084e-02	ci right 5.261246e-02	k: 114049	n:2180000
KS ci ratio: 2.771857e+00	ci left: 1.161367e-08	ci right 2.555797e-06	k: 1	n:2180000
CLSTN1   2180000 perm   2472 sec   (882 perm/sec)   p_kst 4.587156e-07   p_cons 5.231606e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.684418e-06	k: 0	n:2190000
Cons ci ratio: 1.127220e-02	ci left: 5.203693e-02	ci right 5.262727e-02	k: 114606	n:2190000
KS ci ratio: 2.771857e+00	ci left: 1.156064e-08	ci right 2.544127e-06	k: 1	n:2190000
CLSTN1   2190000 perm   2494 sec   (878 perm/sec)   p_kst 4.566210e-07   p_cons 5.233151e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.676762e-06	k: 0	n:2200000
Cons ci ratio: 1.124584e-02	ci left: 5.204380e-02	ci right 5.263283e-02	k: 115143	n:2200000
KS ci ratio: 2.771857e+00	ci left: 1.150809e-08	ci right 2.532563e-06	k: 1	n:2200000
CLSTN1   2200000 perm   2513 sec   (875 perm/sec)   p_kst 4.545455e-07   p_cons 5.233773e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.669175e-06	k: 0	n:2210000
Cons ci ratio: 1.122065e-02	ci left: 5.204204e-02	ci right 5.262972e-02	k: 115661	n:2210000
KS ci ratio: 2.771857e+00	ci left: 1.145602e-08	ci right 2.521103e-06	k: 1	n:2210000
CLSTN1   2210000 perm   2532 sec   (873 perm/sec)   p_kst 4.524887e-07   p_cons 5.233529e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.661656e-06	k: 0	n:2220000
Cons ci ratio: 1.119414e-02	ci left: 5.205332e-02	ci right 5.263974e-02	k: 116208	n:2220000
KS ci ratio: 2.771857e+00	ci left: 1.140442e-08	ci right 2.509747e-06	k: 1	n:2220000
CLSTN1   2220000 perm   2563 sec   (866 perm/sec)   p_kst 4.504505e-07   p_cons 5.234595e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.654205e-06	k: 0	n:2230000
Cons ci ratio: 1.117121e-02	ci left: 5.203454e-02	ci right 5.261953e-02	k: 116688	n:2230000
KS ci ratio: 2.771857e+00	ci left: 1.135328e-08	ci right 2.498492e-06	k: 1	n:2230000
CLSTN1   2230000 perm   2590 sec   (861 perm/sec)   p_kst 4.484305e-07   p_cons 5.232646e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.646820e-06	k: 0	n:2240000
Cons ci ratio: 1.114671e-02	ci left: 5.203107e-02	ci right 5.261473e-02	k: 117202	n:2240000
KS ci ratio: 2.771857e+00	ci left: 1.130259e-08	ci right 2.487338e-06	k: 1	n:2240000
CLSTN1   2240000 perm   2611 sec   (858 perm/sec)   p_kst 4.464286e-07   p_cons 5.232232e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.639501e-06	k: 0	n:2250000
Cons ci ratio: 1.112332e-02	ci left: 5.201921e-02	ci right 5.260150e-02	k: 117697	n:2250000
KS ci ratio: 2.771857e+00	ci left: 1.125236e-08	ci right 2.476283e-06	k: 1	n:2250000
CLSTN1   2250000 perm   2631 sec   (855 perm/sec)   p_kst 4.444444e-07   p_cons 5.230978e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.632246e-06	k: 0	n:2260000
Cons ci ratio: 1.109993e-02	ci left: 5.200877e-02	ci right 5.258972e-02	k: 118195	n:2260000
KS ci ratio: 2.771857e+00	ci left: 1.120257e-08	ci right 2.465326e-06	k: 1	n:2260000
CLSTN1   2260000 perm   2651 sec   (853 perm/sec)   p_kst 4.424779e-07   p_cons 5.229867e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.625056e-06	k: 0	n:2270000
Cons ci ratio: 1.107732e-02	ci left: 5.199272e-02	ci right 5.257230e-02	k: 118680	n:2270000
KS ci ratio: 2.771857e+00	ci left: 1.115322e-08	ci right 2.454466e-06	k: 1	n:2270000
CLSTN1   2270000 perm   2672 sec   (850 perm/sec)   p_kst 4.405286e-07   p_cons 5.228194e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.617928e-06	k: 0	n:2280000
Cons ci ratio: 1.105393e-02	ci left: 5.198512e-02	ci right 5.256338e-02	k: 119184	n:2280000
KS ci ratio: 2.771857e+00	ci left: 1.110430e-08	ci right 2.443701e-06	k: 1	n:2280000
CLSTN1   2280000 perm   2693 sec   (847 perm/sec)   p_kst 4.385965e-07   p_cons 5.227368e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.610863e-06	k: 0	n:2290000
Cons ci ratio: 1.103014e-02	ci left: 5.198238e-02	ci right 5.255936e-02	k: 119699	n:2290000
KS ci ratio: 2.771857e+00	ci left: 1.105581e-08	ci right 2.433030e-06	k: 1	n:2290000
CLSTN1   2290000 perm   2716 sec   (843 perm/sec)   p_kst 4.366812e-07   p_cons 5.227031e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.603859e-06	k: 0	n:2300000
Cons ci ratio: 1.100617e-02	ci left: 5.198270e-02	ci right 5.255842e-02	k: 120221	n:2300000
KS ci ratio: 2.771857e+00	ci left: 1.100774e-08	ci right 2.422451e-06	k: 1	n:2300000
CLSTN1   2300000 perm   2740 sec   (839 perm/sec)   p_kst 4.347826e-07   p_cons 5.227000e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.596916e-06	k: 0	n:2310000
Cons ci ratio: 1.098144e-02	ci left: 5.199123e-02	ci right 5.256574e-02	k: 120762	n:2310000
KS ci ratio: 2.771857e+00	ci left: 1.096009e-08	ci right 2.411964e-06	k: 1	n:2310000
CLSTN1   2310000 perm   2761 sec   (837 perm/sec)   p_kst 4.329004e-07   p_cons 5.227792e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.590033e-06	k: 0	n:2320000
Cons ci ratio: 1.095846e-02	ci left: 5.198549e-02	ci right 5.255873e-02	k: 121270	n:2320000
KS ci ratio: 2.771857e+00	ci left: 1.091285e-08	ci right 2.401568e-06	k: 1	n:2320000
CLSTN1   2320000 perm   2783 sec   (834 perm/sec)   p_kst 4.310345e-07   p_cons 5.227155e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.583209e-06	k: 0	n:2330000
Cons ci ratio: 1.093481e-02	ci left: 5.198708e-02	ci right 5.255909e-02	k: 121795	n:2330000
KS ci ratio: 2.771857e+00	ci left: 1.086601e-08	ci right 2.391261e-06	k: 1	n:2330000
CLSTN1   2330000 perm   2805 sec   (831 perm/sec)   p_kst 4.291845e-07   p_cons 5.227253e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.576443e-06	k: 0	n:2340000
Cons ci ratio: 1.091173e-02	ci left: 5.198483e-02	ci right 5.255560e-02	k: 122311	n:2340000
KS ci ratio: 2.771857e+00	ci left: 1.081958e-08	ci right 2.381042e-06	k: 1	n:2340000
CLSTN1   2340000 perm   2827 sec   (828 perm/sec)   p_kst 4.273504e-07   p_cons 5.226966e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.569735e-06	k: 0	n:2350000
Cons ci ratio: 1.088951e-02	ci left: 5.197622e-02	ci right 5.254573e-02	k: 122812	n:2350000
KS ci ratio: 2.771857e+00	ci left: 1.077354e-08	ci right 2.370910e-06	k: 1	n:2350000
CLSTN1   2350000 perm   2848 sec   (825 perm/sec)   p_kst 4.255319e-07   p_cons 5.226043e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.563083e-06	k: 0	n:2360000
Cons ci ratio: 1.086528e-02	ci left: 5.198714e-02	ci right 5.255549e-02	k: 123359	n:2360000
KS ci ratio: 2.771857e+00	ci left: 1.072788e-08	ci right 2.360864e-06	k: 1	n:2360000
CLSTN1   2360000 perm   2869 sec   (823 perm/sec)   p_kst 4.237288e-07   p_cons 5.227076e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.556488e-06	k: 0	n:2370000
Cons ci ratio: 1.084352e-02	ci left: 5.197692e-02	ci right 5.254401e-02	k: 123856	n:2370000
KS ci ratio: 2.771857e+00	ci left: 1.068262e-08	ci right 2.350902e-06	k: 1	n:2370000
CLSTN1   2370000 perm   2891 sec   (820 perm/sec)   p_kst 4.219409e-07   p_cons 5.225992e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.549948e-06	k: 0	n:2380000
Cons ci ratio: 1.082203e-02	ci left: 5.196552e-02	ci right 5.253136e-02	k: 124350	n:2380000
KS ci ratio: 2.771857e+00	ci left: 1.063773e-08	ci right 2.341024e-06	k: 1	n:2380000
CLSTN1   2380000 perm   2912 sec   (817 perm/sec)   p_kst 4.201681e-07   p_cons 5.224790e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.543463e-06	k: 0	n:2390000
Cons ci ratio: 1.080007e-02	ci left: 5.195965e-02	ci right 5.252428e-02	k: 124857	n:2390000
KS ci ratio: 2.771857e+00	ci left: 1.059323e-08	ci right 2.331229e-06	k: 1	n:2390000
CLSTN1   2390000 perm   2933 sec   (815 perm/sec)   p_kst 4.184100e-07   p_cons 5.224142e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.537032e-06	k: 0	n:2400000
Cons ci ratio: 1.077593e-02	ci left: 5.197503e-02	ci right 5.253855e-02	k: 125415	n:2400000
KS ci ratio: 2.771857e+00	ci left: 1.054909e-08	ci right 2.321516e-06	k: 1	n:2400000
CLSTN1   2400000 perm   2954 sec   (812 perm/sec)   p_kst 4.166667e-07   p_cons 5.225625e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.530654e-06	k: 0	n:2410000
Cons ci ratio: 1.075160e-02	ci left: 5.199359e-02	ci right 5.255603e-02	k: 125981	n:2410000
KS ci ratio: 2.771857e+00	ci left: 1.050531e-08	ci right 2.311883e-06	k: 1	n:2410000
CLSTN1   2410000 perm   2975 sec   (810 perm/sec)   p_kst 4.149378e-07   p_cons 5.227427e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.524329e-06	k: 0	n:2420000
Cons ci ratio: 1.072868e-02	ci left: 5.200046e-02	ci right 5.256177e-02	k: 126519	n:2420000
KS ci ratio: 2.771857e+00	ci left: 1.046190e-08	ci right 2.302330e-06	k: 1	n:2420000
CLSTN1   2420000 perm   2997 sec   (808 perm/sec)   p_kst 4.132231e-07   p_cons 5.228058e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.518056e-06	k: 0	n:2430000
Cons ci ratio: 1.070675e-02	ci left: 5.199948e-02	ci right 5.255962e-02	k: 127038	n:2430000
KS ci ratio: 2.771857e+00	ci left: 1.041885e-08	ci right 2.292855e-06	k: 1	n:2430000
CLSTN1   2430000 perm   3019 sec   (805 perm/sec)   p_kst 4.115226e-07   p_cons 5.227901e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.511835e-06	k: 0	n:2440000
Cons ci ratio: 1.068531e-02	ci left: 5.199523e-02	ci right 5.255420e-02	k: 127549	n:2440000
KS ci ratio: 2.771857e+00	ci left: 1.037615e-08	ci right 2.283458e-06	k: 1	n:2440000
CLSTN1   2440000 perm   3040 sec   (803 perm/sec)   p_kst 4.098361e-07   p_cons 5.227418e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.505664e-06	k: 0	n:2450000
Cons ci ratio: 1.066404e-02	ci left: 5.199061e-02	ci right 5.254841e-02	k: 128059	n:2450000
KS ci ratio: 2.771857e+00	ci left: 1.033380e-08	ci right 2.274138e-06	k: 1	n:2450000
CLSTN1   2450000 perm   3063 sec   (800 perm/sec)   p_kst 4.081633e-07   p_cons 5.226898e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.499543e-06	k: 0	n:2460000
Cons ci ratio: 1.064259e-02	ci left: 5.198887e-02	ci right 5.254552e-02	k: 128576	n:2460000
KS ci ratio: 2.771857e+00	ci left: 1.029179e-08	ci right 2.264894e-06	k: 1	n:2460000
CLSTN1   2460000 perm   3089 sec   (796 perm/sec)   p_kst 4.065041e-07   p_cons 5.226667e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.493472e-06	k: 0	n:2470000
Cons ci ratio: 1.062019e-02	ci left: 5.199724e-02	ci right 5.255280e-02	k: 129118	n:2470000
KS ci ratio: 2.771857e+00	ci left: 1.025012e-08	ci right 2.255724e-06	k: 1	n:2470000
CLSTN1   2470000 perm   3111 sec   (794 perm/sec)   p_kst 4.048583e-07   p_cons 5.227449e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.487450e-06	k: 0	n:2480000
Cons ci ratio: 1.059917e-02	ci left: 5.199388e-02	ci right 5.254830e-02	k: 129631	n:2480000
KS ci ratio: 2.771857e+00	ci left: 1.020879e-08	ci right 2.246628e-06	k: 1	n:2480000
CLSTN1   2480000 perm   3135 sec   (791 perm/sec)   p_kst 4.032258e-07   p_cons 5.227056e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.481477e-06	k: 0	n:2490000
Cons ci ratio: 1.058034e-02	ci left: 5.197132e-02	ci right 5.252451e-02	k: 130096	n:2490000
KS ci ratio: 2.771857e+00	ci left: 1.016779e-08	ci right 2.237606e-06	k: 1	n:2490000
CLSTN1   2490000 perm   3158 sec   (789 perm/sec)   p_kst 4.016064e-07   p_cons 5.224739e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.475551e-06	k: 0	n:2500000
Cons ci ratio: 1.055850e-02	ci left: 5.197806e-02	ci right 5.253017e-02	k: 130634	n:2500000
KS ci ratio: 2.771857e+00	ci left: 1.012712e-08	ci right 2.228655e-06	k: 1	n:2500000
CLSTN1   2500000 perm   3180 sec   (786 perm/sec)   p_kst 4.000000e-07   p_cons 5.225360e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.469672e-06	k: 0	n:2510000
Cons ci ratio: 1.053997e-02	ci left: 5.195495e-02	ci right 5.250584e-02	k: 131097	n:2510000
KS ci ratio: 2.771857e+00	ci left: 1.008678e-08	ci right 2.219776e-06	k: 1	n:2510000
CLSTN1   2510000 perm   3203 sec   (784 perm/sec)   p_kst 3.984064e-07   p_cons 5.222988e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.463840e-06	k: 0	n:2520000
Cons ci ratio: 1.051880e-02	ci left: 5.195775e-02	ci right 5.250756e-02	k: 131625	n:2520000
KS ci ratio: 2.771857e+00	ci left: 1.004675e-08	ci right 2.210968e-06	k: 1	n:2520000
CLSTN1   2520000 perm   3228 sec   (781 perm/sec)   p_kst 3.968254e-07   p_cons 5.223214e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.458054e-06	k: 0	n:2530000
Cons ci ratio: 1.049905e-02	ci left: 5.194831e-02	ci right 5.249698e-02	k: 132122	n:2530000
KS ci ratio: 2.771857e+00	ci left: 1.000704e-08	ci right 2.202229e-06	k: 1	n:2530000
CLSTN1   2530000 perm   3251 sec   (778 perm/sec)   p_kst 3.952569e-07   p_cons 5.222213e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.452314e-06	k: 0	n:2540000
Cons ci ratio: 1.047820e-02	ci left: 5.195033e-02	ci right 5.249793e-02	k: 132648	n:2540000
KS ci ratio: 2.771857e+00	ci left: 9.967641e-09	ci right 2.193558e-06	k: 1	n:2540000
CLSTN1   2540000 perm   3274 sec   (776 perm/sec)   p_kst 3.937008e-07   p_cons 5.222362e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.446618e-06	k: 0	n:2550000
Cons ci ratio: 1.045719e-02	ci left: 5.195508e-02	ci right 5.250162e-02	k: 133181	n:2550000
KS ci ratio: 2.771857e+00	ci left: 9.928552e-09	ci right 2.184956e-06	k: 1	n:2550000
CLSTN1   2550000 perm   3298 sec   (773 perm/sec)   p_kst 3.921569e-07   p_cons 5.222784e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.440968e-06	k: 0	n:2560000
Cons ci ratio: 1.043680e-02	ci left: 5.195512e-02	ci right 5.250059e-02	k: 133702	n:2560000
KS ci ratio: 2.771857e+00	ci left: 9.889769e-09	ci right 2.176421e-06	k: 1	n:2560000
CLSTN1   2560000 perm   3320 sec   (771 perm/sec)   p_kst 3.906250e-07   p_cons 5.222734e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.435361e-06	k: 0	n:2570000
Cons ci ratio: 1.041677e-02	ci left: 5.195282e-02	ci right 5.249721e-02	k: 134217	n:2570000
KS ci ratio: 2.771857e+00	ci left: 9.851287e-09	ci right 2.167953e-06	k: 1	n:2570000
CLSTN1   2570000 perm   3342 sec   (769 perm/sec)   p_kst 3.891051e-07   p_cons 5.222451e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.429797e-06	k: 0	n:2580000
Cons ci ratio: 1.039593e-02	ci left: 5.195944e-02	ci right 5.250281e-02	k: 134755	n:2580000
KS ci ratio: 2.771857e+00	ci left: 9.813104e-09	ci right 2.159550e-06	k: 1	n:2580000
CLSTN1   2580000 perm   3365 sec   (767 perm/sec)   p_kst 3.875969e-07   p_cons 5.223062e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.424277e-06	k: 0	n:2590000
Cons ci ratio: 1.037504e-02	ci left: 5.196755e-02	ci right 5.250990e-02	k: 135297	n:2590000
KS ci ratio: 2.771857e+00	ci left: 9.775216e-09	ci right 2.151212e-06	k: 1	n:2590000
CLSTN1   2590000 perm   3388 sec   (765 perm/sec)   p_kst 3.861004e-07   p_cons 5.223822e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.418799e-06	k: 0	n:2600000
Cons ci ratio: 1.035629e-02	ci left: 5.195641e-02	ci right 5.249766e-02	k: 135789	n:2600000
KS ci ratio: 2.771857e+00	ci left: 9.737618e-09	ci right 2.142938e-06	k: 1	n:2600000
CLSTN1   2600000 perm   3411 sec   (762 perm/sec)   p_kst 3.846154e-07   p_cons 5.222654e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.413363e-06	k: 0	n:2610000
Cons ci ratio: 1.033624e-02	ci left: 5.195874e-02	ci right 5.249896e-02	k: 136316	n:2610000
KS ci ratio: 2.771857e+00	ci left: 9.700310e-09	ci right 2.134727e-06	k: 1	n:2610000
CLSTN1   2610000 perm   3434 sec   (760 perm/sec)   p_kst 3.831418e-07   p_cons 5.222835e-02   p_joint 0

Joint ci ratio: 2.263211e+00	ci left: 9.244630e-08	ci right 2.757512e-06	k: 2	n:2620000
Cons ci ratio: 1.031488e-02	ci left: 5.197476e-02	ci right 5.251402e-02	k: 136879	n:2620000
KS ci ratio: 2.263211e+00	ci left: 9.244630e-08	ci right 2.757512e-06	k: 2	n:2620000
CLSTN1   2620000 perm   3457 sec   (758 perm/sec)   p_kst 7.633588e-07   p_cons 5.224389e-02   p_joint 7.633588e-07

Joint ci ratio: 2.263211e+00	ci left: 9.209480e-08	ci right 2.747027e-06	k: 2	n:2630000
Cons ci ratio: 1.029468e-02	ci left: 5.198079e-02	ci right 5.251905e-02	k: 137416	n:2630000
KS ci ratio: 2.263211e+00	ci left: 9.209480e-08	ci right 2.747027e-06	k: 2	n:2630000
CLSTN1   2630000 perm   3479 sec   (756 perm/sec)   p_kst 7.604563e-07   p_cons 5.224943e-02   p_joint 7.604563e-07

Joint ci ratio: 2.263211e+00	ci left: 9.174595e-08	ci right 2.736621e-06	k: 2	n:2640000
Cons ci ratio: 1.027561e-02	ci left: 5.197696e-02	ci right 5.251418e-02	k: 137927	n:2640000
KS ci ratio: 2.263211e+00	ci left: 9.174595e-08	ci right 2.736621e-06	k: 2	n:2640000
CLSTN1   2640000 perm   3502 sec   (754 perm/sec)   p_kst 7.575758e-07   p_cons 5.224508e-02   p_joint 7.575758e-07

Joint ci ratio: 2.263211e+00	ci left: 9.139974e-08	ci right 2.726295e-06	k: 2	n:2650000
Cons ci ratio: 1.025509e-02	ci left: 5.198821e-02	ci right 5.252447e-02	k: 138478	n:2650000
KS ci ratio: 2.263211e+00	ci left: 9.139974e-08	ci right 2.726295e-06	k: 2	n:2650000
CLSTN1   2650000 perm   3525 sec   (752 perm/sec)   p_kst 7.547170e-07   p_cons 5.225585e-02   p_joint 7.547170e-07

Joint ci ratio: 2.263211e+00	ci left: 9.105613e-08	ci right 2.716045e-06	k: 2	n:2660000
Cons ci ratio: 1.023555e-02	ci left: 5.199113e-02	ci right 5.252639e-02	k: 139007	n:2660000
KS ci ratio: 2.263211e+00	ci left: 9.105613e-08	ci right 2.716045e-06	k: 2	n:2660000
CLSTN1   2660000 perm   3548 sec   (750 perm/sec)   p_kst 7.518797e-07   p_cons 5.225827e-02   p_joint 7.518797e-07

Joint ci ratio: 2.263211e+00	ci left: 9.071510e-08	ci right 2.705873e-06	k: 2	n:2670000
Cons ci ratio: 1.021426e-02	ci left: 5.201196e-02	ci right 5.254631e-02	k: 139584	n:2670000
KS ci ratio: 2.263211e+00	ci left: 9.071510e-08	ci right 2.705873e-06	k: 2	n:2670000
CLSTN1   2670000 perm   3572 sec   (748 perm/sec)   p_kst 7.490637e-07   p_cons 5.227865e-02   p_joint 7.490637e-07

Joint ci ratio: 2.263211e+00	ci left: 9.037661e-08	ci right 2.695776e-06	k: 2	n:2680000
Cons ci ratio: 1.019406e-02	ci left: 5.202333e-02	ci right 5.255674e-02	k: 140136	n:2680000
KS ci ratio: 2.263211e+00	ci left: 9.037661e-08	ci right 2.695776e-06	k: 2	n:2680000
CLSTN1   2680000 perm   3595 sec   (746 perm/sec)   p_kst 7.462687e-07   p_cons 5.228955e-02   p_joint 7.462687e-07

Joint ci ratio: 2.263211e+00	ci left: 9.004064e-08	ci right 2.685755e-06	k: 2	n:2690000
Cons ci ratio: 1.017433e-02	ci left: 5.203128e-02	ci right 5.256373e-02	k: 140679	n:2690000
KS ci ratio: 2.263211e+00	ci left: 9.004064e-08	ci right 2.685755e-06	k: 2	n:2690000
CLSTN1   2690000 perm   3618 sec   (744 perm/sec)   p_kst 7.434944e-07   p_cons 5.229703e-02   p_joint 7.434944e-07

Joint ci ratio: 2.263211e+00	ci left: 8.970715e-08	ci right 2.675808e-06	k: 2	n:2700000
Cons ci ratio: 1.015289e-02	ci left: 5.205691e-02	ci right 5.258849e-02	k: 141270	n:2700000
KS ci ratio: 2.263211e+00	ci left: 8.970715e-08	ci right 2.675808e-06	k: 2	n:2700000
CLSTN1   2700000 perm   3641 sec   (741 perm/sec)   p_kst 7.407407e-07   p_cons 5.232222e-02   p_joint 7.407407e-07

Joint ci ratio: 2.263211e+00	ci left: 8.937613e-08	ci right 2.665934e-06	k: 2	n:2710000
Cons ci ratio: 1.013449e-02	ci left: 5.205400e-02	ci right 5.258459e-02	k: 141784	n:2710000
KS ci ratio: 2.263211e+00	ci left: 8.937613e-08	ci right 2.665934e-06	k: 2	n:2710000
CLSTN1   2710000 perm   3665 sec   (739 perm/sec)   p_kst 7.380074e-07   p_cons 5.231882e-02   p_joint 7.380074e-07

Joint ci ratio: 2.263211e+00	ci left: 8.904754e-08	ci right 2.656133e-06	k: 2	n:2720000
Cons ci ratio: 1.011694e-02	ci left: 5.204379e-02	ci right 5.257334e-02	k: 142278	n:2720000
KS ci ratio: 2.263211e+00	ci left: 8.904754e-08	ci right 2.656133e-06	k: 2	n:2720000
CLSTN1   2720000 perm   3689 sec   (737 perm/sec)   p_kst 7.352941e-07   p_cons 5.230809e-02   p_joint 7.352941e-07

Joint ci ratio: 2.263211e+00	ci left: 8.872136e-08	ci right 2.646403e-06	k: 2	n:2730000
Cons ci ratio: 1.009858e-02	ci left: 5.204241e-02	ci right 5.257099e-02	k: 142796	n:2730000
KS ci ratio: 2.263211e+00	ci left: 8.872136e-08	ci right 2.646403e-06	k: 2	n:2730000
CLSTN1   2730000 perm   3713 sec   (735 perm/sec)   p_kst 7.326007e-07   p_cons 5.230623e-02   p_joint 7.326007e-07

Joint ci ratio: 2.263211e+00	ci left: 8.839756e-08	ci right 2.636745e-06	k: 2	n:2740000
Cons ci ratio: 1.008088e-02	ci left: 5.203559e-02	ci right 5.256317e-02	k: 143299	n:2740000
KS ci ratio: 2.263211e+00	ci left: 8.839756e-08	ci right 2.636745e-06	k: 2	n:2740000
CLSTN1   2740000 perm   3738 sec   (733 perm/sec)   p_kst 7.299270e-07   p_cons 5.229891e-02   p_joint 7.299270e-07

Joint ci ratio: 2.263211e+00	ci left: 8.807611e-08	ci right 2.627157e-06	k: 2	n:2750000
Cons ci ratio: 1.006346e-02	ci left: 5.202700e-02	ci right 5.255358e-02	k: 143797	n:2750000
KS ci ratio: 2.263211e+00	ci left: 8.807611e-08	ci right 2.627157e-06	k: 2	n:2750000
CLSTN1   2750000 perm   3762 sec   (731 perm/sec)   p_kst 7.272727e-07   p_cons 5.228982e-02   p_joint 7.272727e-07

Joint ci ratio: 2.263211e+00	ci left: 8.775700e-08	ci right 2.617638e-06	k: 2	n:2760000
Cons ci ratio: 1.004469e-02	ci left: 5.203258e-02	ci right 5.255822e-02	k: 144334	n:2760000
KS ci ratio: 2.263211e+00	ci left: 8.775700e-08	ci right 2.617638e-06	k: 2	n:2760000
CLSTN1   2760000 perm   3787 sec   (729 perm/sec)   p_kst 7.246377e-07   p_cons 5.229493e-02   p_joint 7.246377e-07

Joint ci ratio: 2.263211e+00	ci left: 8.744018e-08	ci right 2.608188e-06	k: 2	n:2770000
Cons ci ratio: 1.002556e-02	ci left: 5.204279e-02	ci right 5.256753e-02	k: 144884	n:2770000
KS ci ratio: 2.263211e+00	ci left: 8.744018e-08	ci right 2.608188e-06	k: 2	n:2770000
CLSTN1   2770000 perm   3810 sec   (727 perm/sec)   p_kst 7.220217e-07   p_cons 5.230469e-02   p_joint 7.220217e-07

Joint ci ratio: 2.263211e+00	ci left: 8.712565e-08	ci right 2.598806e-06	k: 2	n:2780000
Cons ci ratio: 1.000886e-02	ci left: 5.202997e-02	ci right 5.255370e-02	k: 145370	n:2780000
KS ci ratio: 2.263211e+00	ci left: 8.712565e-08	ci right 2.598806e-06	k: 2	n:2780000
CLSTN1   2780000 perm   3835 sec   (725 perm/sec)   p_kst 7.194245e-07   p_cons 5.229137e-02   p_joint 7.194245e-07

Joint ci ratio: 2.263211e+00	ci left: 8.681337e-08	ci right 2.589491e-06	k: 2	n:2790000
Cons ci ratio: 9.991514e-03	ci left: 5.202439e-02	ci right 5.254715e-02	k: 145876	n:2790000
KS ci ratio: 2.263211e+00	ci left: 8.681337e-08	ci right 2.589491e-06	k: 2	n:2790000
CLSTN1   2790000 perm   3859 sec   (723 perm/sec)   p_kst 7.168459e-07   p_cons 5.228530e-02   p_joint 7.168459e-07

Joint ci ratio: 2.263211e+00	ci left: 8.650333e-08	ci right 2.580243e-06	k: 2	n:2800000
Cons ci ratio: 9.973759e-03	ci left: 5.202384e-02	ci right 5.254566e-02	k: 146396	n:2800000
KS ci ratio: 2.263211e+00	ci left: 8.650333e-08	ci right 2.580243e-06	k: 2	n:2800000
CLSTN1   2800000 perm   3883 sec   (721 perm/sec)   p_kst 7.142857e-07   p_cons 5.228429e-02   p_joint 7.142857e-07

Joint ci ratio: 2.263211e+00	ci left: 8.619548e-08	ci right 2.571061e-06	k: 2	n:2810000
Cons ci ratio: 9.956170e-03	ci left: 5.202258e-02	ci right 5.254347e-02	k: 146914	n:2810000
KS ci ratio: 2.263211e+00	ci left: 8.619548e-08	ci right 2.571061e-06	k: 2	n:2810000
CLSTN1   2810000 perm   3908 sec   (719 perm/sec)   p_kst 7.117438e-07   p_cons 5.228256e-02   p_joint 7.117438e-07

Joint ci ratio: 2.263211e+00	ci left: 8.588983e-08	ci right 2.561944e-06	k: 2	n:2820000
Cons ci ratio: 9.938211e-03	ci left: 5.202594e-02	ci right 5.254591e-02	k: 147445	n:2820000
KS ci ratio: 2.263211e+00	ci left: 8.588983e-08	ci right 2.561944e-06	k: 2	n:2820000
CLSTN1   2820000 perm   3933 sec   (717 perm/sec)   p_kst 7.092199e-07   p_cons 5.228546e-02   p_joint 7.092199e-07

Joint ci ratio: 2.263211e+00	ci left: 8.558633e-08	ci right 2.552891e-06	k: 2	n:2830000
Cons ci ratio: 9.919146e-03	ci left: 5.204125e-02	ci right 5.256037e-02	k: 148010	n:2830000
KS ci ratio: 2.263211e+00	ci left: 8.558633e-08	ci right 2.552891e-06	k: 2	n:2830000
CLSTN1   2830000 perm   3958 sec   (715 perm/sec)   p_kst 7.067138e-07   p_cons 5.230035e-02   p_joint 7.067138e-07

Joint ci ratio: 2.263211e+00	ci left: 8.528497e-08	ci right 2.543902e-06	k: 2	n:2840000
Cons ci ratio: 9.901105e-03	ci left: 5.204733e-02	ci right 5.256556e-02	k: 148549	n:2840000
KS ci ratio: 2.263211e+00	ci left: 8.528497e-08	ci right 2.543902e-06	k: 2	n:2840000
CLSTN1   2840000 perm   3982 sec   (713 perm/sec)   p_kst 7.042254e-07   p_cons 5.230599e-02   p_joint 7.042254e-07

Joint ci ratio: 2.263211e+00	ci left: 8.498572e-08	ci right 2.534976e-06	k: 2	n:2850000
Cons ci ratio: 9.884176e-03	ci left: 5.204321e-02	ci right 5.256051e-02	k: 149059	n:2850000
KS ci ratio: 2.263211e+00	ci left: 8.498572e-08	ci right 2.534976e-06	k: 2	n:2850000
CLSTN1   2850000 perm   4007 sec   (711 perm/sec)   p_kst 7.017544e-07   p_cons 5.230140e-02   p_joint 7.017544e-07

Joint ci ratio: 2.263211e+00	ci left: 8.468857e-08	ci right 2.526112e-06	k: 2	n:2860000
Cons ci ratio: 9.866499e-03	ci left: 5.204749e-02	ci right 5.256390e-02	k: 149593	n:2860000
KS ci ratio: 2.263211e+00	ci left: 8.468857e-08	ci right 2.526112e-06	k: 2	n:2860000
CLSTN1   2860000 perm   4032 sec   (709 perm/sec)   p_kst 6.993007e-07   p_cons 5.230524e-02   p_joint 6.993007e-07

Joint ci ratio: 2.263211e+00	ci left: 8.439349e-08	ci right 2.517310e-06	k: 2	n:2870000
Cons ci ratio: 9.850335e-03	ci left: 5.203749e-02	ci right 5.255296e-02	k: 150086	n:2870000
KS ci ratio: 2.263211e+00	ci left: 8.439349e-08	ci right 2.517310e-06	k: 2	n:2870000
CLSTN1   2870000 perm   4059 sec   (707 perm/sec)   p_kst 6.968641e-07   p_cons 5.229477e-02   p_joint 6.968641e-07

Joint ci ratio: 2.263211e+00	ci left: 8.410045e-08	ci right 2.508570e-06	k: 2	n:2880000
Cons ci ratio: 9.832976e-03	ci left: 5.204038e-02	ci right 5.255496e-02	k: 150616	n:2880000
KS ci ratio: 2.263211e+00	ci left: 8.410045e-08	ci right 2.508570e-06	k: 2	n:2880000
CLSTN1   2880000 perm   4084 sec   (705 perm/sec)   p_kst 6.944444e-07   p_cons 5.229722e-02   p_joint 6.944444e-07

Joint ci ratio: 2.263211e+00	ci left: 8.380945e-08	ci right 2.499890e-06	k: 2	n:2890000
Cons ci ratio: 9.815264e-03	ci left: 5.204774e-02	ci right 5.256146e-02	k: 151159	n:2890000
KS ci ratio: 2.263211e+00	ci left: 8.380945e-08	ci right 2.499890e-06	k: 2	n:2890000
CLSTN1   2890000 perm   4109 sec   (703 perm/sec)   p_kst 6.920415e-07   p_cons 5.230415e-02   p_joint 6.920415e-07

Joint ci ratio: 2.263211e+00	ci left: 8.352045e-08	ci right 2.491269e-06	k: 2	n:2900000
Cons ci ratio: 9.798396e-03	ci left: 5.204748e-02	ci right 5.256031e-02	k: 151680	n:2900000
KS ci ratio: 2.263211e+00	ci left: 8.352045e-08	ci right 2.491269e-06	k: 2	n:2900000
CLSTN1   2900000 perm   4136 sec   (701 perm/sec)   p_kst 6.896552e-07   p_cons 5.230345e-02   p_joint 6.896552e-07

Joint ci ratio: 2.263211e+00	ci left: 8.323344e-08	ci right 2.482708e-06	k: 2	n:2910000
Cons ci ratio: 9.780869e-03	ci left: 5.205477e-02	ci right 5.256674e-02	k: 152223	n:2910000
KS ci ratio: 2.263211e+00	ci left: 8.323344e-08	ci right 2.482708e-06	k: 2	n:2910000
CLSTN1   2910000 perm   4161 sec   (699 perm/sec)   p_kst 6.872852e-07   p_cons 5.231031e-02   p_joint 6.872852e-07

Joint ci ratio: 2.263212e+00	ci left: 8.294839e-08	ci right 2.474206e-06	k: 2	n:2920000
Cons ci ratio: 9.765021e-03	ci left: 5.204594e-02	ci right 5.255700e-02	k: 152719	n:2920000
KS ci ratio: 2.263212e+00	ci left: 8.294839e-08	ci right 2.474206e-06	k: 2	n:2920000
CLSTN1   2920000 perm   4187 sec   (697 perm/sec)   p_kst 6.849315e-07   p_cons 5.230103e-02   p_joint 6.849315e-07

Joint ci ratio: 2.263212e+00	ci left: 8.266529e-08	ci right 2.465762e-06	k: 2	n:2930000
Cons ci ratio: 9.748880e-03	ci left: 5.204093e-02	ci right 5.255108e-02	k: 153226	n:2930000
KS ci ratio: 2.263212e+00	ci left: 8.266529e-08	ci right 2.465762e-06	k: 2	n:2930000
CLSTN1   2930000 perm   4213 sec   (695 perm/sec)   p_kst 6.825939e-07   p_cons 5.229556e-02   p_joint 6.825939e-07

Joint ci ratio: 2.263212e+00	ci left: 8.238412e-08	ci right 2.457375e-06	k: 2	n:2940000
Cons ci ratio: 9.732986e-03	ci left: 5.203425e-02	ci right 5.254350e-02	k: 153728	n:2940000
KS ci ratio: 2.263212e+00	ci left: 8.238412e-08	ci right 2.457375e-06	k: 2	n:2940000
CLSTN1   2940000 perm   4241 sec   (693 perm/sec)   p_kst 6.802721e-07   p_cons 5.228844e-02   p_joint 6.802721e-07

Joint ci ratio: 2.263212e+00	ci left: 8.210485e-08	ci right 2.449044e-06	k: 2	n:2950000
Cons ci ratio: 9.715774e-03	ci left: 5.204182e-02	ci right 5.255024e-02	k: 154272	n:2950000
KS ci ratio: 2.263212e+00	ci left: 8.210485e-08	ci right 2.449044e-06	k: 2	n:2950000
CLSTN1   2950000 perm   4267 sec   (691 perm/sec)   p_kst 6.779661e-07   p_cons 5.229559e-02   p_joint 6.779661e-07

Joint ci ratio: 2.263212e+00	ci left: 8.182747e-08	ci right 2.440771e-06	k: 2	n:2960000
Cons ci ratio: 9.699777e-03	ci left: 5.203788e-02	ci right 5.254543e-02	k: 154782	n:2960000
KS ci ratio: 2.263212e+00	ci left: 8.182747e-08	ci right 2.440771e-06	k: 2	n:2960000
CLSTN1   2960000 perm   4293 sec   (690 perm/sec)   p_kst 6.756757e-07   p_cons 5.229122e-02   p_joint 6.756757e-07

Joint ci ratio: 2.263212e+00	ci left: 8.155196e-08	ci right 2.432553e-06	k: 2	n:2970000
Cons ci ratio: 9.683529e-03	ci left: 5.203733e-02	ci right 5.254401e-02	k: 155302	n:2970000
KS ci ratio: 2.263212e+00	ci left: 8.155196e-08	ci right 2.432553e-06	k: 2	n:2970000
CLSTN1   2970000 perm   4321 sec   (687 perm/sec)   p_kst 6.734007e-07   p_cons 5.229024e-02   p_joint 6.734007e-07

Joint ci ratio: 2.263212e+00	ci left: 8.127829e-08	ci right 2.424390e-06	k: 2	n:2980000
Cons ci ratio: 9.667363e-03	ci left: 5.203678e-02	ci right 5.254261e-02	k: 155822	n:2980000
KS ci ratio: 2.263212e+00	ci left: 8.127829e-08	ci right 2.424390e-06	k: 2	n:2980000
CLSTN1   2980000 perm   4352 sec   (685 perm/sec)   p_kst 6.711409e-07   p_cons 5.228926e-02   p_joint 6.711409e-07

Joint ci ratio: 2.263212e+00	ci left: 8.100646e-08	ci right 2.416281e-06	k: 2	n:2990000
Cons ci ratio: 9.650431e-03	ci left: 5.204492e-02	ci right 5.254993e-02	k: 156368	n:2990000
KS ci ratio: 2.263212e+00	ci left: 8.100646e-08	ci right 2.416281e-06	k: 2	n:2990000
CLSTN1   2990000 perm   4379 sec   (683 perm/sec)   p_kst 6.688963e-07   p_cons 5.229699e-02   p_joint 6.688963e-07

Joint ci ratio: 2.263212e+00	ci left: 8.073644e-08	ci right 2.408227e-06	k: 2	n:3000000
Cons ci ratio: 9.635726e-03	ci left: 5.203105e-02	ci right 5.253515e-02	k: 156848	n:3000000
KS ci ratio: 2.263212e+00	ci left: 8.073644e-08	ci right 2.408227e-06	k: 2	n:3000000
CLSTN1   3000000 perm   4408 sec   (681 perm/sec)   p_kst 6.666667e-07   p_cons 5.228267e-02   p_joint 6.666667e-07

Joint ci ratio: 2.263212e+00	ci left: 8.046821e-08	ci right 2.400226e-06	k: 2	n:3010000
Cons ci ratio: 9.621540e-03	ci left: 5.201263e-02	ci right 5.251581e-02	k: 157314	n:3010000
KS ci ratio: 2.263212e+00	ci left: 8.046821e-08	ci right 2.400226e-06	k: 2	n:3010000
CLSTN1   3010000 perm   4436 sec   (679 perm/sec)   p_kst 6.644518e-07   p_cons 5.226379e-02   p_joint 6.644518e-07

Joint ci ratio: 2.263212e+00	ci left: 8.020176e-08	ci right 2.392279e-06	k: 2	n:3020000
Cons ci ratio: 9.606710e-03	ci left: 5.200160e-02	ci right 5.250390e-02	k: 157802	n:3020000
KS ci ratio: 2.263212e+00	ci left: 8.020176e-08	ci right 2.392279e-06	k: 2	n:3020000
CLSTN1   3020000 perm   4466 sec   (676 perm/sec)   p_kst 6.622517e-07   p_cons 5.225232e-02   p_joint 6.622517e-07

Joint ci ratio: 2.263212e+00	ci left: 7.993707e-08	ci right 2.384383e-06	k: 2	n:3030000
Cons ci ratio: 9.592043e-03	ci left: 5.198966e-02	ci right 5.249107e-02	k: 158287	n:3030000
KS ci ratio: 2.263212e+00	ci left: 7.993707e-08	ci right 2.384383e-06	k: 2	n:3030000
CLSTN1   3030000 perm   4494 sec   (674 perm/sec)   p_kst 6.600660e-07   p_cons 5.223993e-02   p_joint 6.600660e-07

Joint ci ratio: 2.263212e+00	ci left: 7.967411e-08	ci right 2.376540e-06	k: 2	n:3040000
Cons ci ratio: 9.576108e-03	ci left: 5.199158e-02	ci right 5.249217e-02	k: 158814	n:3040000
KS ci ratio: 2.263212e+00	ci left: 7.967411e-08	ci right 2.376540e-06	k: 2	n:3040000
CLSTN1   3040000 perm   4524 sec   (672 perm/sec)   p_kst 6.578947e-07   p_cons 5.224145e-02   p_joint 6.578947e-07

Joint ci ratio: 2.263212e+00	ci left: 7.941289e-08	ci right 2.368748e-06	k: 2	n:3050000
Cons ci ratio: 9.560853e-03	ci left: 5.198727e-02	ci right 5.248702e-02	k: 159322	n:3050000
KS ci ratio: 2.263212e+00	ci left: 7.941289e-08	ci right 2.368748e-06	k: 2	n:3050000
CLSTN1   3050000 perm   4554 sec   (670 perm/sec)   p_kst 6.557377e-07   p_cons 5.223672e-02   p_joint 6.557377e-07

Joint ci ratio: 2.263212e+00	ci left: 7.915337e-08	ci right 2.361007e-06	k: 2	n:3060000
Cons ci ratio: 9.543969e-03	ci left: 5.200060e-02	ci right 5.249959e-02	k: 159884	n:3060000
KS ci ratio: 2.263212e+00	ci left: 7.915337e-08	ci right 2.361007e-06	k: 2	n:3060000
CLSTN1   3060000 perm   4583 sec   (668 perm/sec)   p_kst 6.535948e-07   p_cons 5.224967e-02   p_joint 6.535948e-07

Joint ci ratio: 2.263212e+00	ci left: 7.889554e-08	ci right 2.353316e-06	k: 2	n:3070000
Cons ci ratio: 9.528397e-03	ci left: 5.200117e-02	ci right 5.249935e-02	k: 160407	n:3070000
KS ci ratio: 2.263212e+00	ci left: 7.889554e-08	ci right 2.353316e-06	k: 2	n:3070000
CLSTN1   3070000 perm   4613 sec   (665 perm/sec)   p_kst 6.514658e-07   p_cons 5.224984e-02   p_joint 6.514658e-07

Joint ci ratio: 2.263212e+00	ci left: 7.863939e-08	ci right 2.345676e-06	k: 2	n:3080000
Cons ci ratio: 9.513993e-03	ci left: 5.199040e-02	ci right 5.248772e-02	k: 160895	n:3080000
KS ci ratio: 2.263212e+00	ci left: 7.863939e-08	ci right 2.345676e-06	k: 2	n:3080000
CLSTN1   3080000 perm   4643 sec   (663 perm/sec)   p_kst 6.493506e-07   p_cons 5.223864e-02   p_joint 6.493506e-07

Joint ci ratio: 2.263212e+00	ci left: 7.838489e-08	ci right 2.338085e-06	k: 2	n:3090000
Cons ci ratio: 9.497852e-03	ci left: 5.199843e-02	ci right 5.249497e-02	k: 161441	n:3090000
KS ci ratio: 2.263212e+00	ci left: 7.838489e-08	ci right 2.338085e-06	k: 2	n:3090000
CLSTN1   3090000 perm   4674 sec   (661 perm/sec)   p_kst 6.472492e-07   p_cons 5.224628e-02   p_joint 6.472492e-07

Joint ci ratio: 2.263212e+00	ci left: 7.813203e-08	ci right 2.330542e-06	k: 2	n:3100000
Cons ci ratio: 9.482535e-03	ci left: 5.199868e-02	ci right 5.249442e-02	k: 161963	n:3100000
KS ci ratio: 2.263212e+00	ci left: 7.813203e-08	ci right 2.330542e-06	k: 2	n:3100000
CLSTN1   3100000 perm   4704 sec   (659 perm/sec)   p_kst 6.451613e-07   p_cons 5.224613e-02   p_joint 6.451613e-07

Joint ci ratio: 2.263212e+00	ci left: 7.788081e-08	ci right 2.323049e-06	k: 2	n:3110000
Cons ci ratio: 9.467046e-03	ci left: 5.200149e-02	ci right 5.249645e-02	k: 162493	n:3110000
KS ci ratio: 2.263212e+00	ci left: 7.788081e-08	ci right 2.323049e-06	k: 2	n:3110000
CLSTN1   3110000 perm   4733 sec   (657 perm/sec)   p_kst 6.430868e-07   p_cons 5.224855e-02   p_joint 6.430868e-07

Joint ci ratio: 2.263212e+00	ci left: 7.763119e-08	ci right 2.315603e-06	k: 2	n:3120000
Cons ci ratio: 9.453193e-03	ci left: 5.198798e-02	ci right 5.248208e-02	k: 162972	n:3120000
KS ci ratio: 2.263212e+00	ci left: 7.763119e-08	ci right 2.315603e-06	k: 2	n:3120000
CLSTN1   3120000 perm   4761 sec   (655 perm/sec)   p_kst 6.410256e-07   p_cons 5.223462e-02   p_joint 6.410256e-07

Joint ci ratio: 2.263212e+00	ci left: 7.738317e-08	ci right 2.308205e-06	k: 2	n:3130000
Cons ci ratio: 9.439035e-03	ci left: 5.197838e-02	ci right 5.247165e-02	k: 163463	n:3130000
KS ci ratio: 2.263212e+00	ci left: 7.738317e-08	ci right 2.308205e-06	k: 2	n:3130000
CLSTN1   3130000 perm   4788 sec   (654 perm/sec)   p_kst 6.389776e-07   p_cons 5.222460e-02   p_joint 6.389776e-07

Joint ci ratio: 2.263212e+00	ci left: 7.713672e-08	ci right 2.300854e-06	k: 2	n:3140000
Cons ci ratio: 9.424091e-03	ci left: 5.197774e-02	ci right 5.247022e-02	k: 163982	n:3140000
KS ci ratio: 2.263212e+00	ci left: 7.713672e-08	ci right 2.300854e-06	k: 2	n:3140000
CLSTN1   3140000 perm   4817 sec   (652 perm/sec)   p_kst 6.369427e-07   p_cons 5.222357e-02   p_joint 6.369427e-07

Joint ci ratio: 2.263212e+00	ci left: 7.689184e-08	ci right 2.293550e-06	k: 2	n:3150000
Cons ci ratio: 9.410667e-03	ci left: 5.196191e-02	ci right 5.245352e-02	k: 164453	n:3150000
KS ci ratio: 2.263212e+00	ci left: 7.689184e-08	ci right 2.293550e-06	k: 2	n:3150000
CLSTN1   3150000 perm   4846 sec   (650 perm/sec)   p_kst 6.349206e-07   p_cons 5.220730e-02   p_joint 6.349206e-07

Joint ci ratio: 2.263212e+00	ci left: 7.664851e-08	ci right 2.286292e-06	k: 2	n:3160000
Cons ci ratio: 9.395196e-03	ci left: 5.196827e-02	ci right 5.245913e-02	k: 164994	n:3160000
KS ci ratio: 2.263212e+00	ci left: 7.664851e-08	ci right 2.286292e-06	k: 2	n:3160000
CLSTN1   3160000 perm   4876 sec   (648 perm/sec)   p_kst 6.329114e-07   p_cons 5.221329e-02   p_joint 6.329114e-07

Joint ci ratio: 2.263212e+00	ci left: 7.640672e-08	ci right 2.279079e-06	k: 2	n:3170000
Cons ci ratio: 9.380698e-03	ci left: 5.196515e-02	ci right 5.245522e-02	k: 165505	n:3170000
KS ci ratio: 2.263212e+00	ci left: 7.640672e-08	ci right 2.279079e-06	k: 2	n:3170000
CLSTN1   3170000 perm   4907 sec   (646 perm/sec)   p_kst 6.309148e-07   p_cons 5.220978e-02   p_joint 6.309148e-07

Joint ci ratio: 2.263212e+00	ci left: 7.616645e-08	ci right 2.271912e-06	k: 2	n:3180000
Cons ci ratio: 9.365375e-03	ci left: 5.197147e-02	ci right 5.246079e-02	k: 166046	n:3180000
KS ci ratio: 2.263212e+00	ci left: 7.616645e-08	ci right 2.271912e-06	k: 2	n:3180000
CLSTN1   3180000 perm   4937 sec   (644 perm/sec)   p_kst 6.289308e-07   p_cons 5.221572e-02   p_joint 6.289308e-07

Joint ci ratio: 2.263212e+00	ci left: 7.592768e-08	ci right 2.264791e-06	k: 2	n:3190000
Cons ci ratio: 9.350837e-03	ci left: 5.197024e-02	ci right 5.245879e-02	k: 166563	n:3190000
KS ci ratio: 2.263212e+00	ci left: 7.592768e-08	ci right 2.264791e-06	k: 2	n:3190000
CLSTN1   3190000 perm   4966 sec   (642 perm/sec)   p_kst 6.269592e-07   p_cons 5.221411e-02   p_joint 6.269592e-07

Joint ci ratio: 2.263212e+00	ci left: 7.569041e-08	ci right 2.257713e-06	k: 2	n:3200000
Cons ci ratio: 9.335865e-03	ci left: 5.197432e-02	ci right 5.246212e-02	k: 167097	n:3200000
KS ci ratio: 2.263212e+00	ci left: 7.569041e-08	ci right 2.257713e-06	k: 2	n:3200000
CLSTN1   3200000 perm   4994 sec   (641 perm/sec)   p_kst 6.250000e-07   p_cons 5.221781e-02   p_joint 6.250000e-07

Joint ci ratio: 2.263212e+00	ci left: 7.545461e-08	ci right 2.250680e-06	k: 2	n:3210000
Cons ci ratio: 9.321229e-03	ci left: 5.197557e-02	ci right 5.246262e-02	k: 167622	n:3210000
KS ci ratio: 2.263212e+00	ci left: 7.545461e-08	ci right 2.250680e-06	k: 2	n:3210000
CLSTN1   3210000 perm   5022 sec   (639 perm/sec)   p_kst 6.230530e-07   p_cons 5.221869e-02   p_joint 6.230530e-07

Joint ci ratio: 2.263212e+00	ci left: 7.522028e-08	ci right 2.243690e-06	k: 2	n:3220000
Cons ci ratio: 9.306224e-03	ci left: 5.198147e-02	ci right 5.246778e-02	k: 168162	n:3220000
KS ci ratio: 2.263212e+00	ci left: 7.522028e-08	ci right 2.243690e-06	k: 2	n:3220000
CLSTN1   3220000 perm   5051 sec   (638 perm/sec)   p_kst 6.211180e-07   p_cons 5.222422e-02   p_joint 6.211180e-07

Joint ci ratio: 2.263212e+00	ci left: 7.498740e-08	ci right 2.236744e-06	k: 2	n:3230000
Cons ci ratio: 9.291349e-03	ci left: 5.198671e-02	ci right 5.247229e-02	k: 168700	n:3230000
KS ci ratio: 2.263212e+00	ci left: 7.498740e-08	ci right 2.236744e-06	k: 2	n:3230000
CLSTN1   3230000 perm   5079 sec   (636 perm/sec)   p_kst 6.191950e-07   p_cons 5.222910e-02   p_joint 6.191950e-07

Joint ci ratio: 2.263212e+00	ci left: 7.475596e-08	ci right 2.229840e-06	k: 2	n:3240000
Cons ci ratio: 9.275794e-03	ci left: 5.199993e-02	ci right 5.248482e-02	k: 169264	n:3240000
KS ci ratio: 2.263212e+00	ci left: 7.475596e-08	ci right 2.229840e-06	k: 2	n:3240000
CLSTN1   3240000 perm   5107 sec   (634 perm/sec)   p_kst 6.172840e-07   p_cons 5.224198e-02   p_joint 6.172840e-07

Joint ci ratio: 2.263212e+00	ci left: 7.452594e-08	ci right 2.222979e-06	k: 2	n:3250000
Cons ci ratio: 9.261812e-03	ci left: 5.199711e-02	ci right 5.248123e-02	k: 169776	n:3250000
KS ci ratio: 2.263212e+00	ci left: 7.452594e-08	ci right 2.222979e-06	k: 2	n:3250000
CLSTN1   3250000 perm   5135 sec   (633 perm/sec)   p_kst 6.153846e-07   p_cons 5.223877e-02   p_joint 6.153846e-07

Joint ci ratio: 2.263212e+00	ci left: 7.429733e-08	ci right 2.216160e-06	k: 2	n:3260000
Cons ci ratio: 9.246920e-03	ci left: 5.200470e-02	ci right 5.248812e-02	k: 170322	n:3260000
KS ci ratio: 2.263212e+00	ci left: 7.429733e-08	ci right 2.216160e-06	k: 2	n:3260000
CLSTN1   3260000 perm   5163 sec   (631 perm/sec)   p_kst 6.134969e-07   p_cons 5.224601e-02   p_joint 6.134969e-07

Joint ci ratio: 2.263212e+00	ci left: 7.407012e-08	ci right 2.209383e-06	k: 2	n:3270000
Cons ci ratio: 9.231672e-03	ci left: 5.201683e-02	ci right 5.249956e-02	k: 170883	n:3270000
KS ci ratio: 2.263212e+00	ci left: 7.407012e-08	ci right 2.209383e-06	k: 2	n:3270000
CLSTN1   3270000 perm   5190 sec   (630 perm/sec)   p_kst 6.116208e-07   p_cons 5.225780e-02   p_joint 6.116208e-07

Joint ci ratio: 2.263212e+00	ci left: 7.384430e-08	ci right 2.202647e-06	k: 2	n:3280000
Cons ci ratio: 9.216725e-03	ci left: 5.202645e-02	ci right 5.250848e-02	k: 171436	n:3280000
KS ci ratio: 2.263212e+00	ci left: 7.384430e-08	ci right 2.202647e-06	k: 2	n:3280000
CLSTN1   3280000 perm   5219 sec   (628 perm/sec)   p_kst 6.097561e-07   p_cons 5.226707e-02   p_joint 6.097561e-07

Joint ci ratio: 2.263212e+00	ci left: 7.361985e-08	ci right 2.195952e-06	k: 2	n:3290000
Cons ci ratio: 9.203630e-03	ci left: 5.201691e-02	ci right 5.249816e-02	k: 171926	n:3290000
KS ci ratio: 2.263212e+00	ci left: 7.361985e-08	ci right 2.195952e-06	k: 2	n:3290000
CLSTN1   3290000 perm   5248 sec   (627 perm/sec)   p_kst 6.079027e-07   p_cons 5.225714e-02   p_joint 6.079027e-07

Joint ci ratio: 2.263212e+00	ci left: 7.339676e-08	ci right 2.189298e-06	k: 2	n:3300000
Cons ci ratio: 9.189747e-03	ci left: 5.201650e-02	ci right 5.249702e-02	k: 172446	n:3300000
KS ci ratio: 2.263212e+00	ci left: 7.339676e-08	ci right 2.189298e-06	k: 2	n:3300000
CLSTN1   3300000 perm   5276 sec   (625 perm/sec)   p_kst 6.060606e-07   p_cons 5.225636e-02   p_joint 6.060606e-07

Joint ci ratio: 2.263212e+00	ci left: 7.317502e-08	ci right 2.182683e-06	k: 2	n:3310000
Cons ci ratio: 9.176514e-03	ci left: 5.200976e-02	ci right 5.248952e-02	k: 172945	n:3310000
KS ci ratio: 2.263212e+00	ci left: 7.317502e-08	ci right 2.182683e-06	k: 2	n:3310000
CLSTN1   3310000 perm   5305 sec   (624 perm/sec)   p_kst 6.042296e-07   p_cons 5.224924e-02   p_joint 6.042296e-07

Joint ci ratio: 2.263212e+00	ci left: 7.295461e-08	ci right 2.176109e-06	k: 2	n:3320000
Cons ci ratio: 9.162085e-03	ci left: 5.201658e-02	ci right 5.249565e-02	k: 173489	n:3320000
KS ci ratio: 2.263212e+00	ci left: 7.295461e-08	ci right 2.176109e-06	k: 2	n:3320000
CLSTN1   3320000 perm   5335 sec   (622 perm/sec)   p_kst 6.024096e-07   p_cons 5.225572e-02   p_joint 6.024096e-07

Joint ci ratio: 2.263212e+00	ci left: 7.273553e-08	ci right 2.169574e-06	k: 2	n:3330000
Cons ci ratio: 9.147141e-03	ci left: 5.202966e-02	ci right 5.250806e-02	k: 174054	n:3330000
KS ci ratio: 2.263212e+00	ci left: 7.273553e-08	ci right 2.169574e-06	k: 2	n:3330000
CLSTN1   3330000 perm   5365 sec   (621 perm/sec)   p_kst 6.006006e-07   p_cons 5.226847e-02   p_joint 6.006006e-07

Joint ci ratio: 2.263212e+00	ci left: 7.251776e-08	ci right 2.163078e-06	k: 2	n:3340000
Cons ci ratio: 9.132794e-03	ci left: 5.203698e-02	ci right 5.251469e-02	k: 174600	n:3340000
KS ci ratio: 2.263212e+00	ci left: 7.251776e-08	ci right 2.163078e-06	k: 2	n:3340000
CLSTN1   3340000 perm   5395 sec   (619 perm/sec)   p_kst 5.988024e-07   p_cons 5.227545e-02   p_joint 5.988024e-07

Joint ci ratio: 2.263212e+00	ci left: 7.230129e-08	ci right 2.156622e-06	k: 2	n:3350000
Cons ci ratio: 9.118816e-03	ci left: 5.204098e-02	ci right 5.251800e-02	k: 175135	n:3350000
KS ci ratio: 2.263212e+00	ci left: 7.230129e-08	ci right 2.156622e-06	k: 2	n:3350000
CLSTN1   3350000 perm   5424 sec   (618 perm/sec)   p_kst 5.970149e-07   p_cons 5.227910e-02   p_joint 5.970149e-07

Joint ci ratio: 2.263212e+00	ci left: 7.208610e-08	ci right 2.150203e-06	k: 2	n:3360000
Cons ci ratio: 9.104848e-03	ci left: 5.204556e-02	ci right 5.252188e-02	k: 175672	n:3360000
KS ci ratio: 2.263212e+00	ci left: 7.208610e-08	ci right 2.150203e-06	k: 2	n:3360000
CLSTN1   3360000 perm   5453 sec   (616 perm/sec)   p_kst 5.952381e-07   p_cons 5.228333e-02   p_joint 5.952381e-07

Joint ci ratio: 2.263212e+00	ci left: 7.187220e-08	ci right 2.143823e-06	k: 2	n:3370000
Cons ci ratio: 9.091733e-03	ci left: 5.204152e-02	ci right 5.251711e-02	k: 176180	n:3370000
KS ci ratio: 2.263212e+00	ci left: 7.187220e-08	ci right 2.143823e-06	k: 2	n:3370000
CLSTN1   3370000 perm   5485 sec   (614 perm/sec)   p_kst 5.934718e-07   p_cons 5.227893e-02   p_joint 5.934718e-07

Joint ci ratio: 2.263212e+00	ci left: 7.165956e-08	ci right 2.137480e-06	k: 2	n:3380000
Cons ci ratio: 9.078810e-03	ci left: 5.203603e-02	ci right 5.251089e-02	k: 176683	n:3380000
KS ci ratio: 2.263212e+00	ci left: 7.165956e-08	ci right 2.137480e-06	k: 2	n:3380000
CLSTN1   3380000 perm   5516 sec   (613 perm/sec)   p_kst 5.917160e-07   p_cons 5.227308e-02   p_joint 5.917160e-07

Joint ci ratio: 2.263212e+00	ci left: 7.144817e-08	ci right 2.131175e-06	k: 2	n:3390000
Cons ci ratio: 9.065673e-03	ci left: 5.203351e-02	ci right 5.250767e-02	k: 177196	n:3390000
KS ci ratio: 2.263212e+00	ci left: 7.144817e-08	ci right 2.131175e-06	k: 2	n:3390000
CLSTN1   3390000 perm   5546 sec   (611 perm/sec)   p_kst 5.899705e-07   p_cons 5.227021e-02   p_joint 5.899705e-07

Joint ci ratio: 2.263212e+00	ci left: 7.123803e-08	ci right 2.124907e-06	k: 2	n:3400000
Cons ci ratio: 9.051436e-03	ci left: 5.204363e-02	ci right 5.251713e-02	k: 177752	n:3400000
KS ci ratio: 2.263212e+00	ci left: 7.123803e-08	ci right 2.124907e-06	k: 2	n:3400000
CLSTN1   3400000 perm   5575 sec   (610 perm/sec)   p_kst 5.882353e-07   p_cons 5.228000e-02   p_joint 5.882353e-07

Joint ci ratio: 2.263212e+00	ci left: 7.102912e-08	ci right 2.118675e-06	k: 2	n:3410000
Cons ci ratio: 9.037668e-03	ci left: 5.204931e-02	ci right 5.252213e-02	k: 178293	n:3410000
KS ci ratio: 2.263212e+00	ci left: 7.102912e-08	ci right 2.118675e-06	k: 2	n:3410000
CLSTN1   3410000 perm   5605 sec   (608 perm/sec)   p_kst 5.865103e-07   p_cons 5.228534e-02   p_joint 5.865103e-07

Joint ci ratio: 2.263212e+00	ci left: 7.082143e-08	ci right 2.112480e-06	k: 2	n:3420000
Cons ci ratio: 9.024415e-03	ci left: 5.204999e-02	ci right 5.252212e-02	k: 178817	n:3420000
KS ci ratio: 2.263212e+00	ci left: 7.082143e-08	ci right 2.112480e-06	k: 2	n:3420000
CLSTN1   3420000 perm   5634 sec   (607 perm/sec)   p_kst 5.847953e-07   p_cons 5.228567e-02   p_joint 5.847953e-07

Joint ci ratio: 2.263212e+00	ci left: 7.061496e-08	ci right 2.106321e-06	k: 2	n:3430000
Cons ci ratio: 9.011193e-03	ci left: 5.205095e-02	ci right 5.252240e-02	k: 179342	n:3430000
KS ci ratio: 2.263212e+00	ci left: 7.061496e-08	ci right 2.106321e-06	k: 2	n:3430000
CLSTN1   3430000 perm   5663 sec   (606 perm/sec)   p_kst 5.830904e-07   p_cons 5.228630e-02   p_joint 5.830904e-07

Joint ci ratio: 2.263212e+00	ci left: 7.040968e-08	ci right 2.100198e-06	k: 2	n:3440000
Cons ci ratio: 8.996869e-03	ci left: 5.206468e-02	ci right 5.253549e-02	k: 179911	n:3440000
KS ci ratio: 2.263212e+00	ci left: 7.040968e-08	ci right 2.100198e-06	k: 2	n:3440000
CLSTN1   3440000 perm   5693 sec   (604 perm/sec)   p_kst 5.813953e-07   p_cons 5.229971e-02   p_joint 5.813953e-07

Joint ci ratio: 2.263212e+00	ci left: 7.020560e-08	ci right 2.094111e-06	k: 2	n:3450000
Cons ci ratio: 8.983610e-03	ci left: 5.206733e-02	ci right 5.253748e-02	k: 180442	n:3450000
KS ci ratio: 2.263212e+00	ci left: 7.020560e-08	ci right 2.094111e-06	k: 2	n:3450000
CLSTN1   3450000 perm   5727 sec   (602 perm/sec)   p_kst 5.797101e-07   p_cons 5.230203e-02   p_joint 5.797101e-07

Joint ci ratio: 2.263212e+00	ci left: 7.000269e-08	ci right 2.088058e-06	k: 2	n:3460000
Cons ci ratio: 8.970044e-03	ci left: 5.207401e-02	ci right 5.254350e-02	k: 180987	n:3460000
KS ci ratio: 2.263212e+00	ci left: 7.000269e-08	ci right 2.088058e-06	k: 2	n:3460000
CLSTN1   3460000 perm   5757 sec   (601 perm/sec)   p_kst 5.780347e-07   p_cons 5.230838e-02   p_joint 5.780347e-07

Joint ci ratio: 2.263212e+00	ci left: 6.980095e-08	ci right 2.082041e-06	k: 2	n:3470000
Cons ci ratio: 8.956747e-03	ci left: 5.207835e-02	ci right 5.254718e-02	k: 181524	n:3470000
KS ci ratio: 2.263212e+00	ci left: 6.980095e-08	ci right 2.082041e-06	k: 2	n:3470000
CLSTN1   3470000 perm   5787 sec   (600 perm/sec)   p_kst 5.763689e-07   p_cons 5.231239e-02   p_joint 5.763689e-07

Joint ci ratio: 2.263212e+00	ci left: 6.960038e-08	ci right 2.076058e-06	k: 2	n:3480000
Cons ci ratio: 8.943950e-03	ci left: 5.207779e-02	ci right 5.254594e-02	k: 182044	n:3480000
KS ci ratio: 2.263212e+00	ci left: 6.960038e-08	ci right 2.076058e-06	k: 2	n:3480000
CLSTN1   3480000 perm   5817 sec   (598 perm/sec)   p_kst 5.747126e-07   p_cons 5.231149e-02   p_joint 5.747126e-07

Joint ci ratio: 2.263212e+00	ci left: 6.940095e-08	ci right 2.070110e-06	k: 2	n:3490000
Cons ci ratio: 8.931647e-03	ci left: 5.207237e-02	ci right 5.253983e-02	k: 182547	n:3490000
KS ci ratio: 2.263212e+00	ci left: 6.940095e-08	ci right 2.070110e-06	k: 2	n:3490000
CLSTN1   3490000 perm   5848 sec   (597 perm/sec)   p_kst 5.730659e-07   p_cons 5.230573e-02   p_joint 5.730659e-07

Joint ci ratio: 2.263212e+00	ci left: 6.920266e-08	ci right 2.064195e-06	k: 2	n:3500000
Cons ci ratio: 8.918674e-03	ci left: 5.207497e-02	ci right 5.254177e-02	k: 183078	n:3500000
KS ci ratio: 2.263212e+00	ci left: 6.920266e-08	ci right 2.064195e-06	k: 2	n:3500000
CLSTN1   3500000 perm   5878 sec   (595 perm/sec)   p_kst 5.714286e-07   p_cons 5.230800e-02   p_joint 5.714286e-07

Joint ci ratio: 2.263212e+00	ci left: 6.900550e-08	ci right 2.058314e-06	k: 2	n:3510000
Cons ci ratio: 8.905092e-03	ci left: 5.208495e-02	ci right 5.255112e-02	k: 183635	n:3510000
KS ci ratio: 2.263212e+00	ci left: 6.900550e-08	ci right 2.058314e-06	k: 2	n:3510000
CLSTN1   3510000 perm   5909 sec   (594 perm/sec)   p_kst 5.698006e-07   p_cons 5.231766e-02   p_joint 5.698006e-07

Joint ci ratio: 2.263212e+00	ci left: 6.880946e-08	ci right 2.052467e-06	k: 2	n:3520000
Cons ci ratio: 8.893229e-03	ci left: 5.207644e-02	ci right 5.254191e-02	k: 184127	n:3520000
KS ci ratio: 2.263212e+00	ci left: 6.880946e-08	ci right 2.052467e-06	k: 2	n:3520000
CLSTN1   3520000 perm   5940 sec   (593 perm/sec)   p_kst 5.681818e-07   p_cons 5.230881e-02   p_joint 5.681818e-07

Joint ci ratio: 2.263212e+00	ci left: 6.861453e-08	ci right 2.046652e-06	k: 2	n:3530000
Cons ci ratio: 8.880016e-03	ci left: 5.208353e-02	ci right 5.254837e-02	k: 184674	n:3530000
KS ci ratio: 2.263212e+00	ci left: 6.861453e-08	ci right 2.046652e-06	k: 2	n:3530000
CLSTN1   3530000 perm   5971 sec   (591 perm/sec)   p_kst 5.665722e-07   p_cons 5.231558e-02   p_joint 5.665722e-07

Joint ci ratio: 2.263212e+00	ci left: 6.842071e-08	ci right 2.040871e-06	k: 2	n:3540000
Cons ci ratio: 8.866913e-03	ci left: 5.209001e-02	ci right 5.255422e-02	k: 185219	n:3540000
KS ci ratio: 2.263212e+00	ci left: 6.842071e-08	ci right 2.040871e-06	k: 2	n:3540000
CLSTN1   3540000 perm   6002 sec   (590 perm/sec)   p_kst 5.649718e-07   p_cons 5.232175e-02   p_joint 5.649718e-07

Joint ci ratio: 2.263212e+00	ci left: 6.822797e-08	ci right 2.035122e-06	k: 2	n:3550000
Cons ci ratio: 8.855000e-03	ci left: 5.208381e-02	ci right 5.254734e-02	k: 185719	n:3550000
KS ci ratio: 2.263212e+00	ci left: 6.822797e-08	ci right 2.035122e-06	k: 2	n:3550000
CLSTN1   3550000 perm   6034 sec   (588 perm/sec)   p_kst 5.633803e-07   p_cons 5.231521e-02   p_joint 5.633803e-07

Joint ci ratio: 2.263212e+00	ci left: 6.803632e-08	ci right 2.029405e-06	k: 2	n:3560000
Cons ci ratio: 8.842183e-03	ci left: 5.208830e-02	ci right 5.255119e-02	k: 186257	n:3560000
KS ci ratio: 2.263212e+00	ci left: 6.803632e-08	ci right 2.029405e-06	k: 2	n:3560000
CLSTN1   3560000 perm   6067 sec   (587 perm/sec)   p_kst 5.617978e-07   p_cons 5.231938e-02   p_joint 5.617978e-07

Joint ci ratio: 2.263212e+00	ci left: 6.784574e-08	ci right 2.023721e-06	k: 2	n:3570000
Cons ci ratio: 8.829720e-03	ci left: 5.208941e-02	ci right 5.255165e-02	k: 186783	n:3570000
KS ci ratio: 2.263212e+00	ci left: 6.784574e-08	ci right 2.023721e-06	k: 2	n:3570000
CLSTN1   3570000 perm   6099 sec   (585 perm/sec)   p_kst 5.602241e-07   p_cons 5.232017e-02   p_joint 5.602241e-07

Joint ci ratio: 2.263212e+00	ci left: 6.765623e-08	ci right 2.018068e-06	k: 2	n:3580000
Cons ci ratio: 8.817012e-03	ci left: 5.209386e-02	ci right 5.255547e-02	k: 187321	n:3580000
KS ci ratio: 2.263212e+00	ci left: 6.765623e-08	ci right 2.018068e-06	k: 2	n:3580000
CLSTN1   3580000 perm   6130 sec   (584 perm/sec)   p_kst 5.586592e-07   p_cons 5.232430e-02   p_joint 5.586592e-07

Joint ci ratio: 2.263212e+00	ci left: 6.746777e-08	ci right 2.012446e-06	k: 2	n:3590000
Cons ci ratio: 8.805175e-03	ci left: 5.208911e-02	ci right 5.255006e-02	k: 187826	n:3590000
KS ci ratio: 2.263212e+00	ci left: 6.746777e-08	ci right 2.012446e-06	k: 2	n:3590000
CLSTN1   3590000 perm   6161 sec   (583 perm/sec)   p_kst 5.571031e-07   p_cons 5.231922e-02   p_joint 5.571031e-07

Joint ci ratio: 2.263212e+00	ci left: 6.728036e-08	ci right 2.006856e-06	k: 2	n:3600000
Cons ci ratio: 8.793188e-03	ci left: 5.208660e-02	ci right 5.254690e-02	k: 188339	n:3600000
KS ci ratio: 2.263212e+00	ci left: 6.728036e-08	ci right 2.006856e-06	k: 2	n:3600000
CLSTN1   3600000 perm   6193 sec   (581 perm/sec)   p_kst 5.555556e-07   p_cons 5.231639e-02   p_joint 5.555556e-07

Joint ci ratio: 2.263212e+00	ci left: 6.709399e-08	ci right 2.001297e-06	k: 2	n:3610000
Cons ci ratio: 8.780857e-03	ci left: 5.208853e-02	ci right 5.254820e-02	k: 188868	n:3610000
KS ci ratio: 2.263212e+00	ci left: 6.709399e-08	ci right 2.001297e-06	k: 2	n:3610000
CLSTN1   3610000 perm   6224 sec   (580 perm/sec)   p_kst 5.540166e-07   p_cons 5.231801e-02   p_joint 5.540166e-07

Joint ci ratio: 2.263212e+00	ci left: 6.690865e-08	ci right 1.995769e-06	k: 2	n:3620000
Cons ci ratio: 8.769043e-03	ci left: 5.208521e-02	ci right 5.254423e-02	k: 189378	n:3620000
KS ci ratio: 2.263212e+00	ci left: 6.690865e-08	ci right 1.995769e-06	k: 2	n:3620000
CLSTN1   3620000 perm   6256 sec   (579 perm/sec)   p_kst 5.524862e-07   p_cons 5.231436e-02   p_joint 5.524862e-07

Joint ci ratio: 2.263212e+00	ci left: 6.672433e-08	ci right 1.990271e-06	k: 2	n:3630000
Cons ci ratio: 8.757324e-03	ci left: 5.208137e-02	ci right 5.253973e-02	k: 189886	n:3630000
KS ci ratio: 2.263212e+00	ci left: 6.672433e-08	ci right 1.990271e-06	k: 2	n:3630000
CLSTN1   3630000 perm   6287 sec   (577 perm/sec)   p_kst 5.509642e-07   p_cons 5.231019e-02   p_joint 5.509642e-07

Joint ci ratio: 2.263212e+00	ci left: 6.654102e-08	ci right 1.984803e-06	k: 2	n:3640000
Cons ci ratio: 8.745289e-03	ci left: 5.208165e-02	ci right 5.253939e-02	k: 190409	n:3640000
KS ci ratio: 2.263212e+00	ci left: 6.654102e-08	ci right 1.984803e-06	k: 2	n:3640000
CLSTN1   3640000 perm   6317 sec   (576 perm/sec)   p_kst 5.494505e-07   p_cons 5.231016e-02   p_joint 5.494505e-07

Joint ci ratio: 2.263212e+00	ci left: 6.635871e-08	ci right 1.979365e-06	k: 2	n:3650000
Cons ci ratio: 8.733400e-03	ci left: 5.208084e-02	ci right 5.253795e-02	k: 190928	n:3650000
KS ci ratio: 2.263212e+00	ci left: 6.635871e-08	ci right 1.979365e-06	k: 2	n:3650000
CLSTN1   3650000 perm   6348 sec   (575 perm/sec)   p_kst 5.479452e-07   p_cons 5.230904e-02   p_joint 5.479452e-07

Joint ci ratio: 2.263212e+00	ci left: 6.617741e-08	ci right 1.973957e-06	k: 2	n:3660000
Cons ci ratio: 8.721800e-03	ci left: 5.207731e-02	ci right 5.253378e-02	k: 191437	n:3660000
KS ci ratio: 2.263212e+00	ci left: 6.617741e-08	ci right 1.973957e-06	k: 2	n:3660000
CLSTN1   3660000 perm   6380 sec   (574 perm/sec)   p_kst 5.464481e-07   p_cons 5.230519e-02   p_joint 5.464481e-07

Joint ci ratio: 2.263212e+00	ci left: 6.599709e-08	ci right 1.968578e-06	k: 2	n:3670000
Cons ci ratio: 8.709815e-03	ci left: 5.207870e-02	ci right 5.253454e-02	k: 191964	n:3670000
KS ci ratio: 2.263212e+00	ci left: 6.599709e-08	ci right 1.968578e-06	k: 2	n:3670000
CLSTN1   3670000 perm   6411 sec   (572 perm/sec)   p_kst 5.449591e-07   p_cons 5.230627e-02   p_joint 5.449591e-07

Joint ci ratio: 2.263212e+00	ci left: 6.581775e-08	ci right 1.963229e-06	k: 2	n:3680000
Cons ci ratio: 8.697379e-03	ci left: 5.208577e-02	ci right 5.254102e-02	k: 192512	n:3680000
KS ci ratio: 2.263212e+00	ci left: 6.581775e-08	ci right 1.963229e-06	k: 2	n:3680000
CLSTN1   3680000 perm   6442 sec   (571 perm/sec)   p_kst 5.434783e-07   p_cons 5.231304e-02   p_joint 5.434783e-07

Joint ci ratio: 2.263212e+00	ci left: 6.563938e-08	ci right 1.957909e-06	k: 2	n:3690000
Cons ci ratio: 8.686158e-03	ci left: 5.207955e-02	ci right 5.253416e-02	k: 193011	n:3690000
KS ci ratio: 2.263212e+00	ci left: 6.563938e-08	ci right 1.957909e-06	k: 2	n:3690000
CLSTN1   3690000 perm   6473 sec   (570 perm/sec)   p_kst 5.420054e-07   p_cons 5.230650e-02   p_joint 5.420054e-07

Joint ci ratio: 2.263212e+00	ci left: 6.546197e-08	ci right 1.952617e-06	k: 2	n:3700000
Cons ci ratio: 8.674627e-03	ci left: 5.207741e-02	ci right 5.253140e-02	k: 193525	n:3700000
KS ci ratio: 2.263212e+00	ci left: 6.546197e-08	ci right 1.952617e-06	k: 2	n:3700000
CLSTN1   3700000 perm   6506 sec   (569 perm/sec)   p_kst 5.405405e-07   p_cons 5.230405e-02   p_joint 5.405405e-07

Joint ci ratio: 2.263212e+00	ci left: 6.528553e-08	ci right 1.947354e-06	k: 2	n:3710000
Cons ci ratio: 8.662105e-03	ci left: 5.208712e-02	ci right 5.254053e-02	k: 194083	n:3710000
KS ci ratio: 2.263212e+00	ci left: 6.528553e-08	ci right 1.947354e-06	k: 2	n:3710000
CLSTN1   3710000 perm   6538 sec   (567 perm/sec)   p_kst 5.390836e-07   p_cons 5.231348e-02   p_joint 5.390836e-07

Joint ci ratio: 2.263212e+00	ci left: 6.511003e-08	ci right 1.942119e-06	k: 2	n:3720000
Cons ci ratio: 8.650551e-03	ci left: 5.208632e-02	ci right 5.253911e-02	k: 194602	n:3720000
KS ci ratio: 2.263212e+00	ci left: 6.511003e-08	ci right 1.942119e-06	k: 2	n:3720000
CLSTN1   3720000 perm   6571 sec   (566 perm/sec)   p_kst 5.376344e-07   p_cons 5.231237e-02   p_joint 5.376344e-07

Joint ci ratio: 2.263212e+00	ci left: 6.493547e-08	ci right 1.936912e-06	k: 2	n:3730000
Cons ci ratio: 8.639348e-03	ci left: 5.208204e-02	ci right 5.253421e-02	k: 195108	n:3730000
KS ci ratio: 2.263212e+00	ci left: 6.493547e-08	ci right 1.936912e-06	k: 2	n:3730000
CLSTN1   3730000 perm   6603 sec   (565 perm/sec)   p_kst 5.361930e-07   p_cons 5.230777e-02   p_joint 5.361930e-07

Joint ci ratio: 2.263212e+00	ci left: 6.476185e-08	ci right 1.931733e-06	k: 2	n:3740000
Cons ci ratio: 8.627001e-03	ci left: 5.209139e-02	ci right 5.254299e-02	k: 195665	n:3740000
KS ci ratio: 2.263212e+00	ci left: 6.476185e-08	ci right 1.931733e-06	k: 2	n:3740000
CLSTN1   3740000 perm   6634 sec   (564 perm/sec)   p_kst 5.347594e-07   p_cons 5.231684e-02   p_joint 5.347594e-07

Joint ci ratio: 2.263212e+00	ci left: 6.458915e-08	ci right 1.926582e-06	k: 2	n:3750000
Cons ci ratio: 8.614916e-03	ci left: 5.209830e-02	ci right 5.254932e-02	k: 196213	n:3750000
KS ci ratio: 2.263212e+00	ci left: 6.458915e-08	ci right 1.926582e-06	k: 2	n:3750000
CLSTN1   3750000 perm   6665 sec   (563 perm/sec)   p_kst 5.333333e-07   p_cons 5.232347e-02   p_joint 5.333333e-07

Joint ci ratio: 2.263212e+00	ci left: 6.441737e-08	ci right 1.921458e-06	k: 2	n:3760000
Cons ci ratio: 8.603780e-03	ci left: 5.209482e-02	ci right 5.254523e-02	k: 196722	n:3760000
KS ci ratio: 2.263212e+00	ci left: 6.441737e-08	ci right 1.921458e-06	k: 2	n:3760000
CLSTN1   3760000 perm   6697 sec   (561 perm/sec)   p_kst 5.319149e-07   p_cons 5.231968e-02   p_joint 5.319149e-07

Joint ci ratio: 2.263212e+00	ci left: 6.424650e-08	ci right 1.916361e-06	k: 2	n:3770000
Cons ci ratio: 8.592367e-03	ci left: 5.209507e-02	ci right 5.254488e-02	k: 197245	n:3770000
KS ci ratio: 2.263212e+00	ci left: 6.424650e-08	ci right 1.916361e-06	k: 2	n:3770000
CLSTN1   3770000 perm   6730 sec   (560 perm/sec)   p_kst 5.305040e-07   p_cons 5.231963e-02   p_joint 5.305040e-07

Joint ci ratio: 2.263212e+00	ci left: 6.407654e-08	ci right 1.911292e-06	k: 2	n:3780000
Cons ci ratio: 8.581364e-03	ci left: 5.209109e-02	ci right 5.254028e-02	k: 197752	n:3780000
KS ci ratio: 2.263212e+00	ci left: 6.407654e-08	ci right 1.911292e-06	k: 2	n:3780000
CLSTN1   3780000 perm   6762 sec   (559 perm/sec)   p_kst 5.291005e-07   p_cons 5.231534e-02   p_joint 5.291005e-07

Joint ci ratio: 2.263212e+00	ci left: 6.390747e-08	ci right 1.906249e-06	k: 2	n:3790000
Cons ci ratio: 8.570017e-03	ci left: 5.209161e-02	ci right 5.254021e-02	k: 198276	n:3790000
KS ci ratio: 2.263212e+00	ci left: 6.390747e-08	ci right 1.906249e-06	k: 2	n:3790000
CLSTN1   3790000 perm   6794 sec   (558 perm/sec)   p_kst 5.277045e-07   p_cons 5.231557e-02   p_joint 5.277045e-07

Joint ci ratio: 2.263212e+00	ci left: 6.373929e-08	ci right 1.901232e-06	k: 2	n:3800000
Cons ci ratio: 8.558464e-03	ci left: 5.209501e-02	ci right 5.254304e-02	k: 198811	n:3800000
KS ci ratio: 2.263212e+00	ci left: 6.373929e-08	ci right 1.901232e-06	k: 2	n:3800000
CLSTN1   3800000 perm   6826 sec   (557 perm/sec)   p_kst 5.263158e-07   p_cons 5.231868e-02   p_joint 5.263158e-07

Joint ci ratio: 2.263212e+00	ci left: 6.357200e-08	ci right 1.896242e-06	k: 2	n:3810000
Cons ci ratio: 8.546754e-03	ci left: 5.210076e-02	ci right 5.254822e-02	k: 199355	n:3810000
KS ci ratio: 2.263212e+00	ci left: 6.357200e-08	ci right 1.896242e-06	k: 2	n:3810000
CLSTN1   3810000 perm   6859 sec   (555 perm/sec)   p_kst 5.249344e-07   p_cons 5.232415e-02   p_joint 5.249344e-07

Joint ci ratio: 2.263212e+00	ci left: 6.340558e-08	ci right 1.891278e-06	k: 2	n:3820000
Cons ci ratio: 8.536872e-03	ci left: 5.208584e-02	ci right 5.253264e-02	k: 199820	n:3820000
KS ci ratio: 2.263212e+00	ci left: 6.340558e-08	ci right 1.891278e-06	k: 2	n:3820000
CLSTN1   3820000 perm   6891 sec   (554 perm/sec)   p_kst 5.235602e-07   p_cons 5.230890e-02   p_joint 5.235602e-07

Joint ci ratio: 2.263212e+00	ci left: 6.324003e-08	ci right 1.886340e-06	k: 2	n:3830000
Cons ci ratio: 8.524533e-03	ci left: 5.209991e-02	ci right 5.254619e-02	k: 200396	n:3830000
KS ci ratio: 2.263212e+00	ci left: 6.324003e-08	ci right 1.886340e-06	k: 2	n:3830000
CLSTN1   3830000 perm   6924 sec   (553 perm/sec)   p_kst 5.221932e-07   p_cons 5.232272e-02   p_joint 5.221932e-07

Joint ci ratio: 2.263212e+00	ci left: 6.307534e-08	ci right 1.881428e-06	k: 2	n:3840000
Cons ci ratio: 8.513565e-03	ci left: 5.209859e-02	ci right 5.254428e-02	k: 200913	n:3840000
KS ci ratio: 2.263212e+00	ci left: 6.307534e-08	ci right 1.881428e-06	k: 2	n:3840000
CLSTN1   3840000 perm   6957 sec   (552 perm/sec)   p_kst 5.208333e-07   p_cons 5.232109e-02   p_joint 5.208333e-07

Joint ci ratio: 2.263212e+00	ci left: 6.291151e-08	ci right 1.876541e-06	k: 2	n:3850000
Cons ci ratio: 8.503642e-03	ci left: 5.208560e-02	ci right 5.253066e-02	k: 201385	n:3850000
KS ci ratio: 2.263212e+00	ci left: 6.291151e-08	ci right 1.876541e-06	k: 2	n:3850000
CLSTN1   3850000 perm   6991 sec   (551 perm/sec)   p_kst 5.194805e-07   p_cons 5.230779e-02   p_joint 5.194805e-07

Joint ci ratio: 2.263212e+00	ci left: 6.274852e-08	ci right 1.871679e-06	k: 2	n:3860000
Cons ci ratio: 8.492799e-03	ci left: 5.208380e-02	ci right 5.252827e-02	k: 201900	n:3860000
KS ci ratio: 2.263212e+00	ci left: 6.274852e-08	ci right 1.871679e-06	k: 2	n:3860000
CLSTN1   3860000 perm   7025 sec   (549 perm/sec)   p_kst 5.181347e-07   p_cons 5.230570e-02   p_joint 5.181347e-07

Joint ci ratio: 2.263212e+00	ci left: 6.258638e-08	ci right 1.866843e-06	k: 2	n:3870000
Cons ci ratio: 8.481777e-03	ci left: 5.208459e-02	ci right 5.252849e-02	k: 202425	n:3870000
KS ci ratio: 2.263212e+00	ci left: 6.258638e-08	ci right 1.866843e-06	k: 2	n:3870000
CLSTN1   3870000 perm   7058 sec   (548 perm/sec)   p_kst 5.167959e-07   p_cons 5.230620e-02   p_joint 5.167959e-07

Joint ci ratio: 2.263212e+00	ci left: 6.242508e-08	ci right 1.862032e-06	k: 2	n:3880000
Cons ci ratio: 8.471810e-03	ci left: 5.207354e-02	ci right 5.251682e-02	k: 202904	n:3880000
KS ci ratio: 2.263212e+00	ci left: 6.242508e-08	ci right 1.862032e-06	k: 2	n:3880000
CLSTN1   3880000 perm   7090 sec   (547 perm/sec)   p_kst 5.154639e-07   p_cons 5.229485e-02   p_joint 5.154639e-07

Joint ci ratio: 2.263212e+00	ci left: 6.226460e-08	ci right 1.857245e-06	k: 2	n:3890000
Cons ci ratio: 8.459816e-03	ci left: 5.208666e-02	ci right 5.252943e-02	k: 203477	n:3890000
KS ci ratio: 2.263212e+00	ci left: 6.226460e-08	ci right 1.857245e-06	k: 2	n:3890000
CLSTN1   3890000 perm   7124 sec   (546 perm/sec)   p_kst 5.141388e-07   p_cons 5.230771e-02   p_joint 5.141388e-07

Joint ci ratio: 2.263212e+00	ci left: 6.210495e-08	ci right 1.852483e-06	k: 2	n:3900000
Cons ci ratio: 8.448528e-03	ci left: 5.209205e-02	ci right 5.253426e-02	k: 204020	n:3900000
KS ci ratio: 2.263212e+00	ci left: 6.210495e-08	ci right 1.852483e-06	k: 2	n:3900000
CLSTN1   3900000 perm   7156 sec   (545 perm/sec)   p_kst 5.128205e-07   p_cons 5.231282e-02   p_joint 5.128205e-07

Joint ci ratio: 2.263212e+00	ci left: 6.194611e-08	ci right 1.847745e-06	k: 2	n:3910000
Cons ci ratio: 8.438090e-03	ci left: 5.208796e-02	ci right 5.252959e-02	k: 204526	n:3910000
KS ci ratio: 2.263212e+00	ci left: 6.194611e-08	ci right 1.847745e-06	k: 2	n:3910000
CLSTN1   3910000 perm   7191 sec   (544 perm/sec)   p_kst 5.115090e-07   p_cons 5.230844e-02   p_joint 5.115090e-07

Joint ci ratio: 2.263212e+00	ci left: 6.178809e-08	ci right 1.843031e-06	k: 2	n:3920000
Cons ci ratio: 8.426780e-03	ci left: 5.209458e-02	ci right 5.253567e-02	k: 205074	n:3920000
KS ci ratio: 2.263212e+00	ci left: 6.178809e-08	ci right 1.843031e-06	k: 2	n:3920000
CLSTN1   3920000 perm   7224 sec   (543 perm/sec)   p_kst 5.102041e-07   p_cons 5.231480e-02   p_joint 5.102041e-07

Joint ci ratio: 2.263212e+00	ci left: 6.163087e-08	ci right 1.838342e-06	k: 2	n:3930000
Cons ci ratio: 8.415990e-03	ci left: 5.209558e-02	ci right 5.253612e-02	k: 205600	n:3930000
KS ci ratio: 2.263212e+00	ci left: 6.163087e-08	ci right 1.838342e-06	k: 2	n:3930000
CLSTN1   3930000 perm   7258 sec   (541 perm/sec)   p_kst 5.089059e-07   p_cons 5.231552e-02   p_joint 5.089059e-07

Joint ci ratio: 2.263212e+00	ci left: 6.147444e-08	ci right 1.833676e-06	k: 2	n:3940000
Cons ci ratio: 8.405350e-03	ci left: 5.209532e-02	ci right 5.253529e-02	k: 206121	n:3940000
KS ci ratio: 2.263212e+00	ci left: 6.147444e-08	ci right 1.833676e-06	k: 2	n:3940000
CLSTN1   3940000 perm   7291 sec   (540 perm/sec)   p_kst 5.076142e-07   p_cons 5.231497e-02   p_joint 5.076142e-07

Joint ci ratio: 2.263212e+00	ci left: 6.131881e-08	ci right 1.829034e-06	k: 2	n:3950000
Cons ci ratio: 8.394578e-03	ci left: 5.209707e-02	ci right 5.253649e-02	k: 206650	n:3950000
KS ci ratio: 2.263212e+00	ci left: 6.131881e-08	ci right 1.829034e-06	k: 2	n:3950000
CLSTN1   3950000 perm   7325 sec   (539 perm/sec)   p_kst 5.063291e-07   p_cons 5.231646e-02   p_joint 5.063291e-07

Joint ci ratio: 2.263212e+00	ci left: 6.116397e-08	ci right 1.824415e-06	k: 2	n:3960000
Cons ci ratio: 8.383613e-03	ci left: 5.210159e-02	ci right 5.254048e-02	k: 207190	n:3960000
KS ci ratio: 2.263212e+00	ci left: 6.116397e-08	ci right 1.824415e-06	k: 2	n:3960000
CLSTN1   3960000 perm   7358 sec   (538 perm/sec)   p_kst 5.050505e-07   p_cons 5.232071e-02   p_joint 5.050505e-07

Joint ci ratio: 2.263212e+00	ci left: 6.100990e-08	ci right 1.819819e-06	k: 2	n:3970000
Cons ci ratio: 8.372967e-03	ci left: 5.210282e-02	ci right 5.254116e-02	k: 207717	n:3970000
KS ci ratio: 2.263212e+00	ci left: 6.100990e-08	ci right 1.819819e-06	k: 2	n:3970000
CLSTN1   3970000 perm   7391 sec   (537 perm/sec)   p_kst 5.037783e-07   p_cons 5.232166e-02   p_joint 5.037783e-07

Joint ci ratio: 2.263212e+00	ci left: 6.085661e-08	ci right 1.815247e-06	k: 2	n:3980000
Cons ci ratio: 8.362488e-03	ci left: 5.210254e-02	ci right 5.254032e-02	k: 208238	n:3980000
KS ci ratio: 2.263212e+00	ci left: 6.085661e-08	ci right 1.815247e-06	k: 2	n:3980000
CLSTN1   3980000 perm   7424 sec   (536 perm/sec)   p_kst 5.025126e-07   p_cons 5.232111e-02   p_joint 5.025126e-07

Joint ci ratio: 2.263212e+00	ci left: 6.070409e-08	ci right 1.810697e-06	k: 2	n:3990000
Cons ci ratio: 8.351627e-03	ci left: 5.210727e-02	ci right 5.254451e-02	k: 208779	n:3990000
KS ci ratio: 2.263212e+00	ci left: 6.070409e-08	ci right 1.810697e-06	k: 2	n:3990000
CLSTN1   3990000 perm   7457 sec   (535 perm/sec)   p_kst 5.012531e-07   p_cons 5.232556e-02   p_joint 5.012531e-07

Joint ci ratio: 2.263212e+00	ci left: 6.055233e-08	ci right 1.806171e-06	k: 2	n:4000000
Cons ci ratio: 8.341250e-03	ci left: 5.210673e-02	ci right 5.254342e-02	k: 209299	n:4000000
KS ci ratio: 2.263212e+00	ci left: 6.055233e-08	ci right 1.806171e-06	k: 2	n:4000000
CLSTN1   4000000 perm   7491 sec   (534 perm/sec)   p_kst 5.000000e-07   p_cons 5.232475e-02   p_joint 5.000000e-07

Joint ci ratio: 2.263212e+00	ci left: 6.040132e-08	ci right 1.801667e-06	k: 2	n:4010000
Cons ci ratio: 8.330136e-03	ci left: 5.211540e-02	ci right 5.255158e-02	k: 209856	n:4010000
KS ci ratio: 2.263212e+00	ci left: 6.040132e-08	ci right 1.801667e-06	k: 2	n:4010000
CLSTN1   4010000 perm   7525 sec   (533 perm/sec)   p_kst 4.987531e-07   p_cons 5.233317e-02   p_joint 4.987531e-07

Joint ci ratio: 2.263212e+00	ci left: 6.025107e-08	ci right 1.797185e-06	k: 2	n:4020000
Cons ci ratio: 8.319441e-03	ci left: 5.211956e-02	ci right 5.255522e-02	k: 210395	n:4020000
KS ci ratio: 2.263212e+00	ci left: 6.025107e-08	ci right 1.797185e-06	k: 2	n:4020000
CLSTN1   4020000 perm   7559 sec   (532 perm/sec)   p_kst 4.975124e-07   p_cons 5.233706e-02   p_joint 4.975124e-07

Joint ci ratio: 2.263212e+00	ci left: 6.010156e-08	ci right 1.792725e-06	k: 2	n:4030000
Cons ci ratio: 8.309246e-03	ci left: 5.211825e-02	ci right 5.255336e-02	k: 210912	n:4030000
KS ci ratio: 2.263212e+00	ci left: 6.010156e-08	ci right 1.792725e-06	k: 2	n:4030000
CLSTN1   4030000 perm   7593 sec   (531 perm/sec)   p_kst 4.962779e-07   p_cons 5.233548e-02   p_joint 4.962779e-07

Joint ci ratio: 2.263212e+00	ci left: 5.995280e-08	ci right 1.788288e-06	k: 2	n:4040000
Cons ci ratio: 8.298756e-03	ci left: 5.212090e-02	ci right 5.255548e-02	k: 211445	n:4040000
KS ci ratio: 2.263212e+00	ci left: 5.995280e-08	ci right 1.788288e-06	k: 2	n:4040000
CLSTN1   4040000 perm   7626 sec   (530 perm/sec)   p_kst 4.950495e-07   p_cons 5.233787e-02   p_joint 4.950495e-07

Joint ci ratio: 2.263212e+00	ci left: 5.980477e-08	ci right 1.783872e-06	k: 2	n:4050000
Cons ci ratio: 8.288182e-03	ci left: 5.212502e-02	ci right 5.255908e-02	k: 211984	n:4050000
KS ci ratio: 2.263212e+00	ci left: 5.980477e-08	ci right 1.783872e-06	k: 2	n:4050000
CLSTN1   4050000 perm   7661 sec   (529 perm/sec)   p_kst 4.938272e-07   p_cons 5.234173e-02   p_joint 4.938272e-07

Joint ci ratio: 2.263212e+00	ci left: 5.965746e-08	ci right 1.779479e-06	k: 2	n:4060000
Cons ci ratio: 8.278306e-03	ci left: 5.212125e-02	ci right 5.255476e-02	k: 212491	n:4060000
KS ci ratio: 2.263212e+00	ci left: 5.965746e-08	ci right 1.779479e-06	k: 2	n:4060000
CLSTN1   4060000 perm   7695 sec   (528 perm/sec)   p_kst 4.926108e-07   p_cons 5.233768e-02   p_joint 4.926108e-07

Joint ci ratio: 2.263212e+00	ci left: 5.951088e-08	ci right 1.775106e-06	k: 2	n:4070000
Cons ci ratio: 8.268199e-03	ci left: 5.212069e-02	ci right 5.255366e-02	k: 213011	n:4070000
KS ci ratio: 2.263212e+00	ci left: 5.951088e-08	ci right 1.775106e-06	k: 2	n:4070000
CLSTN1   4070000 perm   7729 sec   (527 perm/sec)   p_kst 4.914005e-07   p_cons 5.233686e-02   p_joint 4.914005e-07

Joint ci ratio: 2.263212e+00	ci left: 5.936502e-08	ci right 1.770756e-06	k: 2	n:4080000
Cons ci ratio: 8.258231e-03	ci left: 5.211891e-02	ci right 5.255134e-02	k: 213526	n:4080000
KS ci ratio: 2.263212e+00	ci left: 5.936502e-08	ci right 1.770756e-06	k: 2	n:4080000
CLSTN1   4080000 perm   7764 sec   (526 perm/sec)   p_kst 4.901961e-07   p_cons 5.233480e-02   p_joint 4.901961e-07

Joint ci ratio: 2.263212e+00	ci left: 5.921988e-08	ci right 1.766426e-06	k: 2	n:4090000
Cons ci ratio: 8.248279e-03	ci left: 5.211738e-02	ci right 5.254927e-02	k: 214042	n:4090000
KS ci ratio: 2.263212e+00	ci left: 5.921988e-08	ci right 1.766426e-06	k: 2	n:4090000
CLSTN1   4090000 perm   7798 sec   (525 perm/sec)   p_kst 4.889976e-07   p_cons 5.233301e-02   p_joint 4.889976e-07

Joint ci ratio: 2.263212e+00	ci left: 5.907544e-08	ci right 1.762118e-06	k: 2	n:4100000
Cons ci ratio: 8.237876e-03	ci left: 5.212170e-02	ci right 5.255308e-02	k: 214582	n:4100000
KS ci ratio: 2.263212e+00	ci left: 5.907544e-08	ci right 1.762118e-06	k: 2	n:4100000
CLSTN1   4100000 perm   7831 sec   (524 perm/sec)   p_kst 4.878049e-07   p_cons 5.233707e-02   p_joint 4.878049e-07

Joint ci ratio: 2.263212e+00	ci left: 5.893170e-08	ci right 1.757830e-06	k: 2	n:4110000
Cons ci ratio: 8.227714e-03	ci left: 5.212357e-02	ci right 5.255443e-02	k: 215112	n:4110000
KS ci ratio: 2.263212e+00	ci left: 5.893170e-08	ci right 1.757830e-06	k: 2	n:4110000
CLSTN1   4110000 perm   7866 sec   (523 perm/sec)   p_kst 4.866180e-07   p_cons 5.233869e-02   p_joint 4.866180e-07

Joint ci ratio: 2.263212e+00	ci left: 5.878867e-08	ci right 1.753564e-06	k: 2	n:4120000
Cons ci ratio: 8.217711e-03	ci left: 5.212398e-02	ci right 5.255432e-02	k: 215636	n:4120000
KS ci ratio: 2.263212e+00	ci left: 5.878867e-08	ci right 1.753564e-06	k: 2	n:4120000
CLSTN1   4120000 perm   7900 sec   (521 perm/sec)   p_kst 4.854369e-07   p_cons 5.233883e-02   p_joint 4.854369e-07

Joint ci ratio: 2.263212e+00	ci left: 5.864632e-08	ci right 1.749318e-06	k: 2	n:4130000
Cons ci ratio: 8.208205e-03	ci left: 5.211883e-02	ci right 5.254863e-02	k: 216137	n:4130000
KS ci ratio: 2.263212e+00	ci left: 5.864632e-08	ci right 1.749318e-06	k: 2	n:4130000
CLSTN1   4130000 perm   7935 sec   (520 perm/sec)   p_kst 4.842615e-07   p_cons 5.233341e-02   p_joint 4.842615e-07

Joint ci ratio: 2.263212e+00	ci left: 5.850466e-08	ci right 1.745093e-06	k: 2	n:4140000
Cons ci ratio: 8.198332e-03	ci left: 5.211852e-02	ci right 5.254780e-02	k: 216658	n:4140000
KS ci ratio: 2.263212e+00	ci left: 5.850466e-08	ci right 1.745093e-06	k: 2	n:4140000
CLSTN1   4140000 perm   7969 sec   (520 perm/sec)   p_kst 4.830918e-07   p_cons 5.233285e-02   p_joint 4.830918e-07

Joint ci ratio: 2.263212e+00	ci left: 5.836369e-08	ci right 1.740888e-06	k: 2	n:4150000
Cons ci ratio: 8.188396e-03	ci left: 5.211943e-02	ci right 5.254819e-02	k: 217184	n:4150000
KS ci ratio: 2.263212e+00	ci left: 5.836369e-08	ci right 1.740888e-06	k: 2	n:4150000
CLSTN1   4150000 perm   8005 sec   (518 perm/sec)   p_kst 4.819277e-07   p_cons 5.233349e-02   p_joint 4.819277e-07

Joint ci ratio: 2.263212e+00	ci left: 5.822339e-08	ci right 1.736703e-06	k: 2	n:4160000
Cons ci ratio: 8.178396e-03	ci left: 5.212152e-02	ci right 5.254977e-02	k: 217715	n:4160000
KS ci ratio: 2.263212e+00	ci left: 5.822339e-08	ci right 1.736703e-06	k: 2	n:4160000
CLSTN1   4160000 perm   8046 sec   (517 perm/sec)   p_kst 4.807692e-07   p_cons 5.233534e-02   p_joint 4.807692e-07

Joint ci ratio: 2.263212e+00	ci left: 5.808377e-08	ci right 1.732538e-06	k: 2	n:4170000
Cons ci ratio: 8.168216e-03	ci left: 5.212624e-02	ci right 5.255400e-02	k: 218257	n:4170000
KS ci ratio: 2.263212e+00	ci left: 5.808377e-08	ci right 1.732538e-06	k: 2	n:4170000
CLSTN1   4170000 perm   8081 sec   (516 perm/sec)   p_kst 4.796163e-07   p_cons 5.233981e-02   p_joint 4.796163e-07

Joint ci ratio: 2.263212e+00	ci left: 5.794481e-08	ci right 1.728393e-06	k: 2	n:4180000
Cons ci ratio: 8.158762e-03	ci left: 5.212258e-02	ci right 5.254981e-02	k: 218764	n:4180000
KS ci ratio: 2.263212e+00	ci left: 5.794481e-08	ci right 1.728393e-06	k: 2	n:4180000
CLSTN1   4180000 perm   8116 sec   (515 perm/sec)   p_kst 4.784689e-07   p_cons 5.233589e-02   p_joint 4.784689e-07

Joint ci ratio: 2.263212e+00	ci left: 5.780652e-08	ci right 1.724268e-06	k: 2	n:4190000
Cons ci ratio: 8.149223e-03	ci left: 5.212037e-02	ci right 5.254708e-02	k: 219277	n:4190000
KS ci ratio: 2.263212e+00	ci left: 5.780652e-08	ci right 1.724268e-06	k: 2	n:4190000
CLSTN1   4190000 perm   8151 sec   (514 perm/sec)   p_kst 4.773270e-07   p_cons 5.233341e-02   p_joint 4.773270e-07

Joint ci ratio: 2.263212e+00	ci left: 5.766888e-08	ci right 1.720163e-06	k: 2	n:4200000
Cons ci ratio: 8.139503e-03	ci left: 5.212078e-02	ci right 5.254698e-02	k: 219801	n:4200000
KS ci ratio: 2.263212e+00	ci left: 5.766888e-08	ci right 1.720163e-06	k: 2	n:4200000
CLSTN1   4200000 perm   8186 sec   (513 perm/sec)   p_kst 4.761905e-07   p_cons 5.233357e-02   p_joint 4.761905e-07

Joint ci ratio: 2.263212e+00	ci left: 5.753190e-08	ci right 1.716077e-06	k: 2	n:4210000
Cons ci ratio: 8.129740e-03	ci left: 5.212214e-02	ci right 5.254784e-02	k: 220329	n:4210000
KS ci ratio: 2.263212e+00	ci left: 5.753190e-08	ci right 1.716077e-06	k: 2	n:4210000
CLSTN1   4210000 perm   8221 sec   (512 perm/sec)   p_kst 4.750594e-07   p_cons 5.233468e-02   p_joint 4.750594e-07

Joint ci ratio: 2.263212e+00	ci left: 5.739557e-08	ci right 1.712010e-06	k: 2	n:4220000
Cons ci ratio: 8.120225e-03	ci left: 5.212089e-02	ci right 5.254608e-02	k: 220846	n:4220000
KS ci ratio: 2.263212e+00	ci left: 5.739557e-08	ci right 1.712010e-06	k: 2	n:4220000
CLSTN1   4220000 perm   8255 sec   (511 perm/sec)   p_kst 4.739336e-07   p_cons 5.233318e-02   p_joint 4.739336e-07

Joint ci ratio: 2.263212e+00	ci left: 5.725988e-08	ci right 1.707963e-06	k: 2	n:4230000
Cons ci ratio: 8.110801e-03	ci left: 5.211894e-02	ci right 5.254361e-02	k: 221360	n:4230000
KS ci ratio: 2.263212e+00	ci left: 5.725988e-08	ci right 1.707963e-06	k: 2	n:4230000
CLSTN1   4230000 perm   8290 sec   (510 perm/sec)   p_kst 4.728132e-07   p_cons 5.233097e-02   p_joint 4.728132e-07

Joint ci ratio: 2.263212e+00	ci left: 5.712483e-08	ci right 1.703935e-06	k: 2	n:4240000
Cons ci ratio: 8.101661e-03	ci left: 5.211394e-02	ci right 5.253809e-02	k: 221861	n:4240000
KS ci ratio: 2.263212e+00	ci left: 5.712483e-08	ci right 1.703935e-06	k: 2	n:4240000
CLSTN1   4240000 perm   8326 sec   (509 perm/sec)   p_kst 4.716981e-07   p_cons 5.232571e-02   p_joint 4.716981e-07

Joint ci ratio: 2.263212e+00	ci left: 5.699042e-08	ci right 1.699925e-06	k: 2	n:4250000
Cons ci ratio: 8.092513e-03	ci left: 5.210943e-02	ci right 5.253306e-02	k: 222364	n:4250000
KS ci ratio: 2.263212e+00	ci left: 5.699042e-08	ci right 1.699925e-06	k: 2	n:4250000
CLSTN1   4250000 perm   8361 sec   (508 perm/sec)   p_kst 4.705882e-07   p_cons 5.232094e-02   p_joint 4.705882e-07

Joint ci ratio: 2.263212e+00	ci left: 5.685664e-08	ci right 1.695935e-06	k: 2	n:4260000
Cons ci ratio: 8.082477e-03	ci left: 5.211619e-02	ci right 5.253935e-02	k: 222915	n:4260000
KS ci ratio: 2.263212e+00	ci left: 5.685664e-08	ci right 1.695935e-06	k: 2	n:4260000
CLSTN1   4260000 perm   8397 sec   (507 perm/sec)   p_kst 4.694836e-07   p_cons 5.232746e-02   p_joint 4.694836e-07

Joint ci ratio: 2.263212e+00	ci left: 5.672349e-08	ci right 1.691963e-06	k: 2	n:4270000
Cons ci ratio: 8.073794e-03	ci left: 5.210679e-02	ci right 5.252942e-02	k: 223397	n:4270000
KS ci ratio: 2.263212e+00	ci left: 5.672349e-08	ci right 1.691963e-06	k: 2	n:4270000
CLSTN1   4270000 perm   8431 sec   (506 perm/sec)   p_kst 4.683841e-07   p_cons 5.231780e-02   p_joint 4.683841e-07

Joint ci ratio: 2.263212e+00	ci left: 5.659096e-08	ci right 1.688010e-06	k: 2	n:4280000
Cons ci ratio: 8.064056e-03	ci left: 5.211072e-02	ci right 5.253287e-02	k: 223936	n:4280000
KS ci ratio: 2.263212e+00	ci left: 5.659096e-08	ci right 1.688010e-06	k: 2	n:4280000
CLSTN1   4280000 perm   8467 sec   (505 perm/sec)   p_kst 4.672897e-07   p_cons 5.232150e-02   p_joint 4.672897e-07

Joint ci ratio: 2.263212e+00	ci left: 5.645904e-08	ci right 1.684075e-06	k: 2	n:4290000
Cons ci ratio: 8.054316e-03	ci left: 5.211511e-02	ci right 5.253678e-02	k: 224477	n:4290000
KS ci ratio: 2.263212e+00	ci left: 5.645904e-08	ci right 1.684075e-06	k: 2	n:4290000
CLSTN1   4290000 perm   8503 sec   (505 perm/sec)   p_kst 4.662005e-07   p_cons 5.232564e-02   p_joint 4.662005e-07

Joint ci ratio: 2.263212e+00	ci left: 5.632774e-08	ci right 1.680159e-06	k: 2	n:4300000
Cons ci ratio: 8.044912e-03	ci left: 5.211576e-02	ci right 5.253694e-02	k: 225002	n:4300000
KS ci ratio: 2.263212e+00	ci left: 5.632774e-08	ci right 1.680159e-06	k: 2	n:4300000
CLSTN1   4300000 perm   8539 sec   (504 perm/sec)   p_kst 4.651163e-07   p_cons 5.232605e-02   p_joint 4.651163e-07

Joint ci ratio: 2.263212e+00	ci left: 5.619705e-08	ci right 1.676261e-06	k: 2	n:4310000
Cons ci ratio: 8.034996e-03	ci left: 5.212312e-02	ci right 5.254384e-02	k: 225556	n:4310000
KS ci ratio: 2.263212e+00	ci left: 5.619705e-08	ci right 1.676261e-06	k: 2	n:4310000
CLSTN1   4310000 perm   8575 sec   (503 perm/sec)   p_kst 4.640371e-07   p_cons 5.233318e-02   p_joint 4.640371e-07

Joint ci ratio: 2.263212e+00	ci left: 5.606697e-08	ci right 1.672380e-06	k: 2	n:4320000
Cons ci ratio: 8.025697e-03	ci left: 5.212328e-02	ci right 5.254352e-02	k: 226079	n:4320000
KS ci ratio: 2.263212e+00	ci left: 5.606697e-08	ci right 1.672380e-06	k: 2	n:4320000
CLSTN1   4320000 perm   8610 sec   (502 perm/sec)   p_kst 4.629630e-07   p_cons 5.233310e-02   p_joint 4.629630e-07

Joint ci ratio: 2.263212e+00	ci left: 5.593748e-08	ci right 1.668518e-06	k: 2	n:4330000
Cons ci ratio: 8.015982e-03	ci left: 5.212898e-02	ci right 5.254875e-02	k: 226626	n:4330000
KS ci ratio: 2.263212e+00	ci left: 5.593748e-08	ci right 1.668518e-06	k: 2	n:4330000
CLSTN1   4330000 perm   8646 sec   (501 perm/sec)   p_kst 4.618938e-07   p_cons 5.233857e-02   p_joint 4.618938e-07

Joint ci ratio: 2.263212e+00	ci left: 5.580859e-08	ci right 1.664674e-06	k: 2	n:4340000
Cons ci ratio: 8.006563e-03	ci left: 5.213144e-02	ci right 5.255073e-02	k: 227159	n:4340000
KS ci ratio: 2.263212e+00	ci left: 5.580859e-08	ci right 1.664674e-06	k: 2	n:4340000
CLSTN1   4340000 perm   8683 sec   (500 perm/sec)   p_kst 4.608295e-07   p_cons 5.234078e-02   p_joint 4.608295e-07

Joint ci ratio: 2.263212e+00	ci left: 5.568030e-08	ci right 1.660847e-06	k: 2	n:4350000
Cons ci ratio: 7.997325e-03	ci left: 5.213204e-02	ci right 5.255085e-02	k: 227684	n:4350000
KS ci ratio: 2.263212e+00	ci left: 5.568030e-08	ci right 1.660847e-06	k: 2	n:4350000
CLSTN1   4350000 perm   8719 sec   (499 perm/sec)   p_kst 4.597701e-07   p_cons 5.234115e-02   p_joint 4.597701e-07

Joint ci ratio: 2.263212e+00	ci left: 5.555259e-08	ci right 1.657037e-06	k: 2	n:4360000
Cons ci ratio: 7.988027e-03	ci left: 5.213379e-02	ci right 5.255213e-02	k: 228214	n:4360000
KS ci ratio: 2.263212e+00	ci left: 5.555259e-08	ci right 1.657037e-06	k: 2	n:4360000
CLSTN1   4360000 perm   8755 sec   (498 perm/sec)   p_kst 4.587156e-07   p_cons 5.234266e-02   p_joint 4.587156e-07

Joint ci ratio: 2.263212e+00	ci left: 5.542547e-08	ci right 1.653246e-06	k: 2	n:4370000
Cons ci ratio: 7.978596e-03	ci left: 5.213759e-02	ci right 5.255546e-02	k: 228753	n:4370000
KS ci ratio: 2.263212e+00	ci left: 5.542547e-08	ci right 1.653246e-06	k: 2	n:4370000
CLSTN1   4370000 perm   8792 sec   (497 perm/sec)   p_kst 4.576659e-07   p_cons 5.234622e-02   p_joint 4.576659e-07

Joint ci ratio: 2.263212e+00	ci left: 5.529893e-08	ci right 1.649471e-06	k: 2	n:4380000
Cons ci ratio: 7.970023e-03	ci left: 5.213111e-02	ci right 5.254848e-02	k: 229247	n:4380000
KS ci ratio: 2.263212e+00	ci left: 5.529893e-08	ci right 1.649471e-06	k: 2	n:4380000
CLSTN1   4380000 perm   8829 sec   (496 perm/sec)   p_kst 4.566210e-07   p_cons 5.233950e-02   p_joint 4.566210e-07

Joint ci ratio: 2.263212e+00	ci left: 5.517296e-08	ci right 1.645714e-06	k: 2	n:4390000
Cons ci ratio: 7.960363e-03	ci left: 5.213853e-02	ci right 5.255545e-02	k: 229802	n:4390000
KS ci ratio: 2.263212e+00	ci left: 5.517296e-08	ci right 1.645714e-06	k: 2	n:4390000
CLSTN1   4390000 perm   8866 sec   (495 perm/sec)   p_kst 4.555809e-07   p_cons 5.234670e-02   p_joint 4.555809e-07

Joint ci ratio: 2.263212e+00	ci left: 5.504757e-08	ci right 1.641973e-06	k: 2	n:4400000
Cons ci ratio: 7.951430e-03	ci left: 5.213730e-02	ci right 5.255374e-02	k: 230319	n:4400000
KS ci ratio: 2.263212e+00	ci left: 5.504757e-08	ci right 1.641973e-06	k: 2	n:4400000
CLSTN1   4400000 perm   8902 sec   (494 perm/sec)   p_kst 4.545455e-07   p_cons 5.234523e-02   p_joint 4.545455e-07

Joint ci ratio: 2.263212e+00	ci left: 5.492274e-08	ci right 1.638250e-06	k: 2	n:4410000
Cons ci ratio: 7.942708e-03	ci left: 5.213381e-02	ci right 5.254977e-02	k: 230826	n:4410000
KS ci ratio: 2.263212e+00	ci left: 5.492274e-08	ci right 1.638250e-06	k: 2	n:4410000
CLSTN1   4410000 perm   8938 sec   (493 perm/sec)   p_kst 4.535147e-07   p_cons 5.234150e-02   p_joint 4.535147e-07

Joint ci ratio: 2.263212e+00	ci left: 5.479848e-08	ci right 1.634544e-06	k: 2	n:4420000
Cons ci ratio: 7.933762e-03	ci left: 5.213350e-02	ci right 5.254898e-02	k: 231347	n:4420000
KS ci ratio: 2.263212e+00	ci left: 5.479848e-08	ci right 1.634544e-06	k: 2	n:4420000
CLSTN1   4420000 perm   8975 sec   (492 perm/sec)   p_kst 4.524887e-07   p_cons 5.234095e-02   p_joint 4.524887e-07

Joint ci ratio: 2.263212e+00	ci left: 5.467479e-08	ci right 1.630854e-06	k: 2	n:4430000
Cons ci ratio: 7.924521e-03	ci left: 5.213725e-02	ci right 5.255227e-02	k: 231886	n:4430000
KS ci ratio: 2.263212e+00	ci left: 5.467479e-08	ci right 1.630854e-06	k: 2	n:4430000
CLSTN1   4430000 perm   9012 sec   (492 perm/sec)   p_kst 4.514673e-07   p_cons 5.234447e-02   p_joint 4.514673e-07

Joint ci ratio: 2.263212e+00	ci left: 5.455164e-08	ci right 1.627181e-06	k: 2	n:4440000
Cons ci ratio: 7.914935e-03	ci left: 5.214570e-02	ci right 5.256029e-02	k: 232446	n:4440000
KS ci ratio: 2.263212e+00	ci left: 5.455164e-08	ci right 1.627181e-06	k: 2	n:4440000
CLSTN1   4440000 perm   9050 sec   (491 perm/sec)   p_kst 4.504505e-07   p_cons 5.235270e-02   p_joint 4.504505e-07

Joint ci ratio: 2.263212e+00	ci left: 5.442906e-08	ci right 1.623524e-06	k: 2	n:4450000
Cons ci ratio: 7.906082e-03	ci left: 5.214537e-02	ci right 5.255949e-02	k: 232967	n:4450000
KS ci ratio: 2.263212e+00	ci left: 5.442906e-08	ci right 1.623524e-06	k: 2	n:4450000
CLSTN1   4450000 perm   9087 sec   (490 perm/sec)   p_kst 4.494382e-07   p_cons 5.235213e-02   p_joint 4.494382e-07

Joint ci ratio: 2.263212e+00	ci left: 5.430702e-08	ci right 1.619884e-06	k: 2	n:4460000
Cons ci ratio: 7.897098e-03	ci left: 5.214705e-02	ci right 5.256071e-02	k: 233497	n:4460000
KS ci ratio: 2.263212e+00	ci left: 5.430702e-08	ci right 1.619884e-06	k: 2	n:4460000
CLSTN1   4460000 perm   9125 sec   (489 perm/sec)   p_kst 4.484305e-07   p_cons 5.235359e-02   p_joint 4.484305e-07

Joint ci ratio: 2.263212e+00	ci left: 5.418553e-08	ci right 1.616260e-06	k: 2	n:4470000
Cons ci ratio: 7.888608e-03	ci left: 5.214292e-02	ci right 5.255610e-02	k: 234001	n:4470000
KS ci ratio: 2.263212e+00	ci left: 5.418553e-08	ci right 1.616260e-06	k: 2	n:4470000
CLSTN1   4470000 perm   9162 sec   (488 perm/sec)   p_kst 4.474273e-07   p_cons 5.234922e-02   p_joint 4.474273e-07

Joint ci ratio: 2.263212e+00	ci left: 5.406458e-08	ci right 1.612653e-06	k: 2	n:4480000
Cons ci ratio: 7.879683e-03	ci left: 5.214460e-02	ci right 5.255732e-02	k: 234531	n:4480000
KS ci ratio: 2.263212e+00	ci left: 5.406458e-08	ci right 1.612653e-06	k: 2	n:4480000
CLSTN1   4480000 perm   9198 sec   (487 perm/sec)   p_kst 4.464286e-07   p_cons 5.235067e-02   p_joint 4.464286e-07

Joint ci ratio: 2.263212e+00	ci left: 5.394416e-08	ci right 1.609061e-06	k: 2	n:4490000
Cons ci ratio: 7.870912e-03	ci left: 5.214471e-02	ci right 5.255698e-02	k: 235054	n:4490000
KS ci ratio: 2.263212e+00	ci left: 5.394416e-08	ci right 1.609061e-06	k: 2	n:4490000
CLSTN1   4490000 perm   9236 sec   (486 perm/sec)   p_kst 4.454343e-07   p_cons 5.235056e-02   p_joint 4.454343e-07

Joint ci ratio: 2.263212e+00	ci left: 5.382429e-08	ci right 1.605485e-06	k: 2	n:4500000
Cons ci ratio: 7.861977e-03	ci left: 5.214727e-02	ci right 5.255908e-02	k: 235588	n:4500000
KS ci ratio: 2.263212e+00	ci left: 5.382429e-08	ci right 1.605485e-06	k: 2	n:4500000
CLSTN1   4500000 perm   9273 sec   (485 perm/sec)   p_kst 4.444444e-07   p_cons 5.235289e-02   p_joint 4.444444e-07

Joint ci ratio: 2.263212e+00	ci left: 5.370494e-08	ci right 1.601925e-06	k: 2	n:4510000
Cons ci ratio: 7.853178e-03	ci left: 5.214849e-02	ci right 5.255985e-02	k: 236116	n:4510000
KS ci ratio: 2.263212e+00	ci left: 5.370494e-08	ci right 1.601925e-06	k: 2	n:4510000
CLSTN1   4510000 perm   9311 sec   (484 perm/sec)   p_kst 4.434590e-07   p_cons 5.235388e-02   p_joint 4.434590e-07

Joint ci ratio: 2.263212e+00	ci left: 5.358613e-08	ci right 1.598381e-06	k: 2	n:4520000
Cons ci ratio: 7.843639e-03	ci left: 5.215942e-02	ci right 5.257036e-02	k: 236688	n:4520000
KS ci ratio: 2.263212e+00	ci left: 5.358613e-08	ci right 1.598381e-06	k: 2	n:4520000
CLSTN1   4520000 perm   9349 sec   (483 perm/sec)   p_kst 4.424779e-07   p_cons 5.236460e-02   p_joint 4.424779e-07

Joint ci ratio: 2.263212e+00	ci left: 5.346784e-08	ci right 1.594853e-06	k: 2	n:4530000
Cons ci ratio: 7.834204e-03	ci left: 5.216942e-02	ci right 5.257994e-02	k: 237256	n:4530000
KS ci ratio: 2.263212e+00	ci left: 5.346784e-08	ci right 1.594853e-06	k: 2	n:4530000
CLSTN1   4530000 perm   9386 sec   (483 perm/sec)   p_kst 4.415011e-07   p_cons 5.237439e-02   p_joint 4.415011e-07

Joint ci ratio: 2.263212e+00	ci left: 5.335007e-08	ci right 1.591340e-06	k: 2	n:4540000
Cons ci ratio: 7.826470e-03	ci left: 5.215827e-02	ci right 5.256830e-02	k: 237728	n:4540000
KS ci ratio: 2.263212e+00	ci left: 5.335007e-08	ci right 1.591340e-06	k: 2	n:4540000
CLSTN1   4540000 perm   9423 sec   (482 perm/sec)   p_kst 4.405286e-07   p_cons 5.236300e-02   p_joint 4.405286e-07

Joint ci ratio: 2.263212e+00	ci left: 5.323281e-08	ci right 1.587843e-06	k: 2	n:4550000
Cons ci ratio: 7.817581e-03	ci left: 5.216208e-02	ci right 5.257168e-02	k: 238268	n:4550000
KS ci ratio: 2.263212e+00	ci left: 5.323281e-08	ci right 1.587843e-06	k: 2	n:4550000
CLSTN1   4550000 perm   9460 sec   (481 perm/sec)   p_kst 4.395604e-07   p_cons 5.236659e-02   p_joint 4.395604e-07

Joint ci ratio: 2.263212e+00	ci left: 5.311607e-08	ci right 1.584360e-06	k: 2	n:4560000
Cons ci ratio: 7.808861e-03	ci left: 5.216413e-02	ci right 5.257328e-02	k: 238800	n:4560000
KS ci ratio: 2.263212e+00	ci left: 5.311607e-08	ci right 1.584360e-06	k: 2	n:4560000
CLSTN1   4560000 perm   9497 sec   (480 perm/sec)   p_kst 4.385965e-07   p_cons 5.236842e-02   p_joint 4.385965e-07

Joint ci ratio: 2.263212e+00	ci left: 5.299985e-08	ci right 1.580894e-06	k: 2	n:4570000
Cons ci ratio: 7.800823e-03	ci left: 5.215787e-02	ci right 5.256655e-02	k: 239294	n:4570000
KS ci ratio: 2.263212e+00	ci left: 5.299985e-08	ci right 1.580894e-06	k: 2	n:4570000
CLSTN1   4570000 perm   9533 sec   (479 perm/sec)   p_kst 4.376368e-07   p_cons 5.236193e-02   p_joint 4.376368e-07

Joint ci ratio: 2.263212e+00	ci left: 5.288413e-08	ci right 1.577442e-06	k: 2	n:4580000
Cons ci ratio: 7.791901e-03	ci left: 5.216319e-02	ci right 5.257144e-02	k: 239841	n:4580000
KS ci ratio: 2.263212e+00	ci left: 5.288413e-08	ci right 1.577442e-06	k: 2	n:4580000
CLSTN1   4580000 perm   9571 sec   (479 perm/sec)   p_kst 4.366812e-07   p_cons 5.236703e-02   p_joint 4.366812e-07

Joint ci ratio: 2.263212e+00	ci left: 5.276891e-08	ci right 1.574005e-06	k: 2	n:4590000
Cons ci ratio: 7.783386e-03	ci left: 5.216370e-02	ci right 5.257151e-02	k: 240366	n:4590000
KS ci ratio: 2.263212e+00	ci left: 5.276891e-08	ci right 1.574005e-06	k: 2	n:4590000
CLSTN1   4590000 perm   9607 sec   (478 perm/sec)   p_kst 4.357298e-07   p_cons 5.236732e-02   p_joint 4.357298e-07

Joint ci ratio: 2.263212e+00	ci left: 5.265420e-08	ci right 1.570583e-06	k: 2	n:4600000
Cons ci ratio: 7.774643e-03	ci left: 5.216746e-02	ci right 5.257484e-02	k: 240906	n:4600000
KS ci ratio: 2.263212e+00	ci left: 5.265420e-08	ci right 1.570583e-06	k: 2	n:4600000
CLSTN1   4600000 perm   9645 sec   (477 perm/sec)   p_kst 4.347826e-07   p_cons 5.237087e-02   p_joint 4.347826e-07

Joint ci ratio: 2.263212e+00	ci left: 5.253998e-08	ci right 1.567176e-06	k: 2	n:4610000
Cons ci ratio: 7.766320e-03	ci left: 5.216623e-02	ci right 5.257316e-02	k: 241423	n:4610000
KS ci ratio: 2.263212e+00	ci left: 5.253998e-08	ci right 1.567176e-06	k: 2	n:4610000
CLSTN1   4610000 perm   9682 sec   (476 perm/sec)   p_kst 4.338395e-07   p_cons 5.236941e-02   p_joint 4.338395e-07

Joint ci ratio: 2.263212e+00	ci left: 5.242626e-08	ci right 1.563784e-06	k: 2	n:4620000
Cons ci ratio: 7.757685e-03	ci left: 5.216933e-02	ci right 5.257582e-02	k: 241960	n:4620000
KS ci ratio: 2.263212e+00	ci left: 5.242626e-08	ci right 1.563784e-06	k: 2	n:4620000
CLSTN1   4620000 perm   9719 sec   (475 perm/sec)   p_kst 4.329004e-07   p_cons 5.237229e-02   p_joint 4.329004e-07

Joint ci ratio: 2.263212e+00	ci left: 5.231302e-08	ci right 1.560407e-06	k: 2	n:4630000
Cons ci ratio: 7.749063e-03	ci left: 5.217262e-02	ci right 5.257869e-02	k: 242498	n:4630000
KS ci ratio: 2.263212e+00	ci left: 5.231302e-08	ci right 1.560407e-06	k: 2	n:4630000
CLSTN1   4630000 perm   9757 sec   (475 perm/sec)   p_kst 4.319654e-07   p_cons 5.237538e-02   p_joint 4.319654e-07

Joint ci ratio: 2.263212e+00	ci left: 5.220028e-08	ci right 1.557044e-06	k: 2	n:4640000
Cons ci ratio: 7.740939e-03	ci left: 5.216988e-02	ci right 5.257550e-02	k: 243008	n:4640000
KS ci ratio: 2.263212e+00	ci left: 5.220028e-08	ci right 1.557044e-06	k: 2	n:4640000
CLSTN1   4640000 perm   9794 sec   (474 perm/sec)   p_kst 4.310345e-07   p_cons 5.237241e-02   p_joint 4.310345e-07

Joint ci ratio: 2.263212e+00	ci left: 5.208802e-08	ci right 1.553695e-06	k: 2	n:4650000
Cons ci ratio: 7.731652e-03	ci left: 5.218240e-02	ci right 5.258762e-02	k: 243589	n:4650000
KS ci ratio: 2.263212e+00	ci left: 5.208802e-08	ci right 1.553695e-06	k: 2	n:4650000
CLSTN1   4650000 perm   9833 sec   (473 perm/sec)   p_kst 4.301075e-07   p_cons 5.238473e-02   p_joint 4.301075e-07

Joint ci ratio: 2.263212e+00	ci left: 5.197624e-08	ci right 1.550361e-06	k: 2	n:4660000
Cons ci ratio: 7.723516e-03	ci left: 5.218050e-02	ci right 5.258529e-02	k: 244103	n:4660000
KS ci ratio: 2.263212e+00	ci left: 5.197624e-08	ci right 1.550361e-06	k: 2	n:4660000
CLSTN1   4660000 perm   9872 sec   (472 perm/sec)   p_kst 4.291845e-07   p_cons 5.238262e-02   p_joint 4.291845e-07

Joint ci ratio: 2.263212e+00	ci left: 5.186495e-08	ci right 1.547041e-06	k: 2	n:4670000
Cons ci ratio: 7.714490e-03	ci left: 5.219038e-02	ci right 5.259476e-02	k: 244672	n:4670000
KS ci ratio: 2.263212e+00	ci left: 5.186495e-08	ci right 1.547041e-06	k: 2	n:4670000
CLSTN1   4670000 perm   9911 sec   (471 perm/sec)   p_kst 4.282655e-07   p_cons 5.239229e-02   p_joint 4.282655e-07

Joint ci ratio: 2.263212e+00	ci left: 5.175412e-08	ci right 1.543736e-06	k: 2	n:4680000
Cons ci ratio: 7.706143e-03	ci left: 5.219189e-02	ci right 5.259585e-02	k: 245202	n:4680000
KS ci ratio: 2.263212e+00	ci left: 5.175412e-08	ci right 1.543736e-06	k: 2	n:4680000
CLSTN1   4680000 perm   9949 sec   (470 perm/sec)   p_kst 4.273504e-07   p_cons 5.239359e-02   p_joint 4.273504e-07

Joint ci ratio: 2.263212e+00	ci left: 5.164377e-08	ci right 1.540444e-06	k: 2	n:4690000
Cons ci ratio: 7.697724e-03	ci left: 5.219467e-02	ci right 5.259821e-02	k: 245738	n:4690000
KS ci ratio: 2.263212e+00	ci left: 5.164377e-08	ci right 1.540444e-06	k: 2	n:4690000
CLSTN1   4690000 perm   9987 sec   (470 perm/sec)   p_kst 4.264392e-07   p_cons 5.239616e-02   p_joint 4.264392e-07

Joint ci ratio: 2.263212e+00	ci left: 5.153389e-08	ci right 1.537167e-06	k: 2	n:4700000
Cons ci ratio: 7.689514e-03	ci left: 5.219510e-02	ci right 5.259821e-02	k: 246263	n:4700000
KS ci ratio: 2.263212e+00	ci left: 5.153389e-08	ci right 1.537167e-06	k: 2	n:4700000
CLSTN1   4700000 perm   10025 sec   (469 perm/sec)   p_kst 4.255319e-07   p_cons 5.239638e-02   p_joint 4.255319e-07

Joint ci ratio: 2.263212e+00	ci left: 5.142448e-08	ci right 1.533903e-06	k: 2	n:4710000
Cons ci ratio: 7.681247e-03	ci left: 5.219660e-02	ci right 5.259928e-02	k: 246793	n:4710000
KS ci ratio: 2.263212e+00	ci left: 5.142448e-08	ci right 1.533903e-06	k: 2	n:4710000
CLSTN1   4710000 perm   10062 sec   (468 perm/sec)   p_kst 4.246285e-07   p_cons 5.239766e-02   p_joint 4.246285e-07

Joint ci ratio: 2.263212e+00	ci left: 5.131553e-08	ci right 1.530653e-06	k: 2	n:4720000
Cons ci ratio: 7.672745e-03	ci left: 5.220147e-02	ci right 5.260374e-02	k: 247339	n:4720000
KS ci ratio: 2.263212e+00	ci left: 5.131553e-08	ci right 1.530653e-06	k: 2	n:4720000
CLSTN1   4720000 perm   10101 sec   (467 perm/sec)   p_kst 4.237288e-07   p_cons 5.240233e-02   p_joint 4.237288e-07

Joint ci ratio: 2.263212e+00	ci left: 5.120704e-08	ci right 1.527417e-06	k: 2	n:4730000
Cons ci ratio: 7.664354e-03	ci left: 5.220526e-02	ci right 5.260713e-02	k: 247880	n:4730000
KS ci ratio: 2.263212e+00	ci left: 5.120704e-08	ci right 1.527417e-06	k: 2	n:4730000
CLSTN1   4730000 perm   10139 sec   (466 perm/sec)   p_kst 4.228330e-07   p_cons 5.240592e-02   p_joint 4.228330e-07

Joint ci ratio: 2.263212e+00	ci left: 5.109901e-08	ci right 1.524195e-06	k: 2	n:4740000
Cons ci ratio: 7.656119e-03	ci left: 5.220736e-02	ci right 5.260880e-02	k: 248413	n:4740000
KS ci ratio: 2.263212e+00	ci left: 5.109901e-08	ci right 1.524195e-06	k: 2	n:4740000
CLSTN1   4740000 perm   10177 sec   (466 perm/sec)   p_kst 4.219409e-07   p_cons 5.240781e-02   p_joint 4.219409e-07

Joint ci ratio: 2.263212e+00	ci left: 5.099143e-08	ci right 1.520986e-06	k: 2	n:4750000
Cons ci ratio: 7.647798e-03	ci left: 5.221091e-02	ci right 5.261195e-02	k: 248953	n:4750000
KS ci ratio: 2.263212e+00	ci left: 5.099143e-08	ci right 1.520986e-06	k: 2	n:4750000
CLSTN1   4750000 perm   10216 sec   (465 perm/sec)   p_kst 4.210526e-07   p_cons 5.241116e-02   p_joint 4.210526e-07

Joint ci ratio: 2.263212e+00	ci left: 5.088431e-08	ci right 1.517791e-06	k: 2	n:4760000
Cons ci ratio: 7.639310e-03	ci left: 5.221697e-02	ci right 5.261761e-02	k: 249505	n:4760000
KS ci ratio: 2.263212e+00	ci left: 5.088431e-08	ci right 1.517791e-06	k: 2	n:4760000
CLSTN1   4760000 perm   10254 sec   (464 perm/sec)   p_kst 4.201681e-07   p_cons 5.241702e-02   p_joint 4.201681e-07

Joint ci ratio: 2.263212e+00	ci left: 5.077763e-08	ci right 1.514609e-06	k: 2	n:4770000
Cons ci ratio: 7.631091e-03	ci left: 5.221987e-02	ci right 5.262009e-02	k: 250042	n:4770000
KS ci ratio: 2.263212e+00	ci left: 5.077763e-08	ci right 1.514609e-06	k: 2	n:4770000
CLSTN1   4770000 perm   10293 sec   (463 perm/sec)   p_kst 4.192872e-07   p_cons 5.241971e-02   p_joint 4.192872e-07

Joint ci ratio: 2.263212e+00	ci left: 5.067140e-08	ci right 1.511440e-06	k: 2	n:4780000
Cons ci ratio: 7.622225e-03	ci left: 5.223152e-02	ci right 5.263137e-02	k: 250621	n:4780000
KS ci ratio: 2.263212e+00	ci left: 5.067140e-08	ci right 1.511440e-06	k: 2	n:4780000
CLSTN1   4780000 perm   10332 sec   (463 perm/sec)   p_kst 4.184100e-07   p_cons 5.243117e-02   p_joint 4.184100e-07

Joint ci ratio: 2.263212e+00	ci left: 5.056562e-08	ci right 1.508285e-06	k: 2	n:4790000
Cons ci ratio: 7.613854e-03	ci left: 5.223708e-02	ci right 5.263653e-02	k: 251171	n:4790000
KS ci ratio: 2.263212e+00	ci left: 5.056562e-08	ci right 1.508285e-06	k: 2	n:4790000
CLSTN1   4790000 perm   10371 sec   (462 perm/sec)   p_kst 4.175365e-07   p_cons 5.243653e-02   p_joint 4.175365e-07

Joint ci ratio: 2.263212e+00	ci left: 5.046027e-08	ci right 1.505142e-06	k: 2	n:4800000
Cons ci ratio: 7.605621e-03	ci left: 5.224116e-02	ci right 5.264021e-02	k: 251714	n:4800000
KS ci ratio: 2.263212e+00	ci left: 5.046027e-08	ci right 1.505142e-06	k: 2	n:4800000
CLSTN1   4800000 perm   10410 sec   (461 perm/sec)   p_kst 4.166667e-07   p_cons 5.244042e-02   p_joint 4.166667e-07

Joint ci ratio: 2.263212e+00	ci left: 5.035536e-08	ci right 1.502013e-06	k: 2	n:4810000
Cons ci ratio: 7.597638e-03	ci left: 5.224233e-02	ci right 5.264096e-02	k: 252243	n:4810000
KS ci ratio: 2.263212e+00	ci left: 5.035536e-08	ci right 1.502013e-06	k: 2	n:4810000
CLSTN1   4810000 perm   10450 sec   (460 perm/sec)   p_kst 4.158004e-07   p_cons 5.244137e-02   p_joint 4.158004e-07

Joint ci ratio: 2.263212e+00	ci left: 5.025089e-08	ci right 1.498897e-06	k: 2	n:4820000
Cons ci ratio: 7.588761e-03	ci left: 5.225549e-02	ci right 5.265376e-02	k: 252830	n:4820000
KS ci ratio: 2.263212e+00	ci left: 5.025089e-08	ci right 1.498897e-06	k: 2	n:4820000
CLSTN1   4820000 perm   10490 sec   (459 perm/sec)   p_kst 4.149378e-07   p_cons 5.245436e-02   p_joint 4.149378e-07

Joint ci ratio: 2.263212e+00	ci left: 5.014685e-08	ci right 1.495794e-06	k: 2	n:4830000
Cons ci ratio: 7.580784e-03	ci left: 5.225724e-02	ci right 5.265510e-02	k: 253362	n:4830000
KS ci ratio: 2.263212e+00	ci left: 5.014685e-08	ci right 1.495794e-06	k: 2	n:4830000
CLSTN1   4830000 perm   10531 sec   (459 perm/sec)   p_kst 4.140787e-07   p_cons 5.245590e-02   p_joint 4.140787e-07

Joint ci ratio: 2.263212e+00	ci left: 5.004324e-08	ci right 1.492703e-06	k: 2	n:4840000
Cons ci ratio: 7.573413e-03	ci left: 5.225135e-02	ci right 5.264877e-02	k: 253857	n:4840000
KS ci ratio: 2.263212e+00	ci left: 5.004324e-08	ci right 1.492703e-06	k: 2	n:4840000
CLSTN1   4840000 perm   10571 sec   (458 perm/sec)   p_kst 4.132231e-07   p_cons 5.244979e-02   p_joint 4.132231e-07

Joint ci ratio: 2.263212e+00	ci left: 4.994006e-08	ci right 1.489626e-06	k: 2	n:4850000
Cons ci ratio: 7.565547e-03	ci left: 5.225227e-02	ci right 5.264929e-02	k: 254385	n:4850000
KS ci ratio: 2.263212e+00	ci left: 4.994006e-08	ci right 1.489626e-06	k: 2	n:4850000
CLSTN1   4850000 perm   10611 sec   (457 perm/sec)   p_kst 4.123711e-07   p_cons 5.245052e-02   p_joint 4.123711e-07

Joint ci ratio: 2.263212e+00	ci left: 4.983730e-08	ci right 1.486560e-06	k: 2	n:4860000
Cons ci ratio: 7.557595e-03	ci left: 5.225463e-02	ci right 5.265125e-02	k: 254920	n:4860000
KS ci ratio: 2.263212e+00	ci left: 4.983730e-08	ci right 1.486560e-06	k: 2	n:4860000
CLSTN1   4860000 perm   10653 sec   (456 perm/sec)   p_kst 4.115226e-07   p_cons 5.245267e-02   p_joint 4.115226e-07

Joint ci ratio: 2.263212e+00	ci left: 4.973497e-08	ci right 1.483508e-06	k: 2	n:4870000
Cons ci ratio: 7.549825e-03	ci left: 5.225493e-02	ci right 5.265114e-02	k: 255445	n:4870000
KS ci ratio: 2.263212e+00	ci left: 4.973497e-08	ci right 1.483508e-06	k: 2	n:4870000
CLSTN1   4870000 perm   10693 sec   (455 perm/sec)   p_kst 4.106776e-07   p_cons 5.245277e-02   p_joint 4.106776e-07

Joint ci ratio: 2.263212e+00	ci left: 4.963305e-08	ci right 1.480468e-06	k: 2	n:4880000
Cons ci ratio: 7.541440e-03	ci left: 5.226362e-02	ci right 5.265945e-02	k: 256011	n:4880000
KS ci ratio: 2.263212e+00	ci left: 4.963305e-08	ci right 1.480468e-06	k: 2	n:4880000
CLSTN1   4880000 perm   10732 sec   (455 perm/sec)   p_kst 4.098361e-07   p_cons 5.246127e-02   p_joint 4.098361e-07

Joint ci ratio: 2.263212e+00	ci left: 4.953155e-08	ci right 1.477440e-06	k: 2	n:4890000
Cons ci ratio: 7.533874e-03	ci left: 5.226186e-02	ci right 5.265728e-02	k: 256526	n:4890000
KS ci ratio: 2.263212e+00	ci left: 4.953155e-08	ci right 1.477440e-06	k: 2	n:4890000
CLSTN1   4890000 perm   10771 sec   (454 perm/sec)   p_kst 4.089980e-07   p_cons 5.245930e-02   p_joint 4.089980e-07

Joint ci ratio: 2.263212e+00	ci left: 4.943047e-08	ci right 1.474425e-06	k: 2	n:4900000
Cons ci ratio: 7.525991e-03	ci left: 5.226459e-02	ci right 5.265961e-02	k: 257063	n:4900000
KS ci ratio: 2.263212e+00	ci left: 4.943047e-08	ci right 1.474425e-06	k: 2	n:4900000
CLSTN1   4900000 perm   10811 sec   (453 perm/sec)   p_kst 4.081633e-07   p_cons 5.246184e-02   p_joint 4.081633e-07

Joint ci ratio: 2.263212e+00	ci left: 4.932980e-08	ci right 1.471422e-06	k: 2	n:4910000
Cons ci ratio: 7.518133e-03	ci left: 5.226731e-02	ci right 5.266194e-02	k: 257600	n:4910000
KS ci ratio: 2.263212e+00	ci left: 4.932980e-08	ci right 1.471422e-06	k: 2	n:4910000
CLSTN1   4910000 perm   10851 sec   (452 perm/sec)   p_kst 4.073320e-07   p_cons 5.246436e-02   p_joint 4.073320e-07

Joint ci ratio: 2.263212e+00	ci left: 4.922953e-08	ci right 1.468432e-06	k: 2	n:4920000
Cons ci ratio: 7.510790e-03	ci left: 5.226352e-02	ci right 5.265774e-02	k: 258105	n:4920000
KS ci ratio: 2.263212e+00	ci left: 4.922953e-08	ci right 1.468432e-06	k: 2	n:4920000
CLSTN1   4920000 perm   10891 sec   (452 perm/sec)   p_kst 4.065041e-07   p_cons 5.246037e-02   p_joint 4.065041e-07

Joint ci ratio: 2.263212e+00	ci left: 4.912967e-08	ci right 1.465453e-06	k: 2	n:4930000
Cons ci ratio: 7.502857e-03	ci left: 5.226785e-02	ci right 5.266168e-02	k: 258650	n:4930000
KS ci ratio: 2.263212e+00	ci left: 4.912967e-08	ci right 1.465453e-06	k: 2	n:4930000
CLSTN1   4930000 perm   10932 sec   (451 perm/sec)   p_kst 4.056795e-07   p_cons 5.246450e-02   p_joint 4.056795e-07

Joint ci ratio: 2.263212e+00	ci left: 4.903022e-08	ci right 1.462487e-06	k: 2	n:4940000
Cons ci ratio: 7.495757e-03	ci left: 5.226145e-02	ci right 5.265486e-02	k: 259142	n:4940000
KS ci ratio: 2.263212e+00	ci left: 4.903022e-08	ci right 1.462487e-06	k: 2	n:4940000
CLSTN1   4940000 perm   10971 sec   (450 perm/sec)   p_kst 4.048583e-07   p_cons 5.245789e-02   p_joint 4.048583e-07

Joint ci ratio: 2.263212e+00	ci left: 4.893117e-08	ci right 1.459532e-06	k: 2	n:4950000
Cons ci ratio: 7.487643e-03	ci left: 5.226879e-02	ci right 5.266183e-02	k: 259702	n:4950000
KS ci ratio: 2.263212e+00	ci left: 4.893117e-08	ci right 1.459532e-06	k: 2	n:4950000
CLSTN1   4950000 perm   11014 sec   (449 perm/sec)   p_kst 4.040404e-07   p_cons 5.246505e-02   p_joint 4.040404e-07

Joint ci ratio: 2.263212e+00	ci left: 4.883252e-08	ci right 1.456589e-06	k: 2	n:4960000
Cons ci ratio: 7.480313e-03	ci left: 5.226604e-02	ci right 5.265867e-02	k: 260212	n:4960000
KS ci ratio: 2.263212e+00	ci left: 4.883252e-08	ci right 1.456589e-06	k: 2	n:4960000
CLSTN1   4960000 perm   11055 sec   (449 perm/sec)   p_kst 4.032258e-07   p_cons 5.246210e-02   p_joint 4.032258e-07

Joint ci ratio: 2.263212e+00	ci left: 4.873426e-08	ci right 1.453659e-06	k: 2	n:4970000
Cons ci ratio: 7.473081e-03	ci left: 5.226230e-02	ci right 5.265452e-02	k: 260717	n:4970000
KS ci ratio: 2.263212e+00	ci left: 4.873426e-08	ci right 1.453659e-06	k: 2	n:4970000
CLSTN1   4970000 perm   11095 sec   (448 perm/sec)   p_kst 4.024145e-07   p_cons 5.245815e-02   p_joint 4.024145e-07

Joint ci ratio: 2.263212e+00	ci left: 4.863640e-08	ci right 1.450740e-06	k: 2	n:4980000
Cons ci ratio: 7.465779e-03	ci left: 5.225977e-02	ci right 5.265159e-02	k: 261228	n:4980000
KS ci ratio: 2.263212e+00	ci left: 4.863640e-08	ci right 1.450740e-06	k: 2	n:4980000
CLSTN1   4980000 perm   11135 sec   (447 perm/sec)   p_kst 4.016064e-07   p_cons 5.245542e-02   p_joint 4.016064e-07

Joint ci ratio: 2.263212e+00	ci left: 4.853894e-08	ci right 1.447832e-06	k: 2	n:4990000
Cons ci ratio: 7.458498e-03	ci left: 5.225726e-02	ci right 5.264867e-02	k: 261739	n:4990000
KS ci ratio: 2.263212e+00	ci left: 4.853894e-08	ci right 1.447832e-06	k: 2	n:4990000
CLSTN1   4990000 perm   11176 sec   (446 perm/sec)   p_kst 4.008016e-07   p_cons 5.245271e-02   p_joint 4.008016e-07

Joint ci ratio: 2.263212e+00	ci left: 4.844186e-08	ci right 1.444937e-06	k: 2	n:5000000
Cons ci ratio: 7.451344e-03	ci left: 5.225336e-02	ci right 5.264436e-02	k: 262243	n:5000000
KS ci ratio: 2.263212e+00	ci left: 4.844186e-08	ci right 1.444937e-06	k: 2	n:5000000
CLSTN1   5000000 perm   11216 sec   (446 perm/sec)   p_kst 4.000000e-07   p_cons 5.244860e-02   p_joint 4.000000e-07

Outputting figure to mutsig2_images.part000000000039/CLSTN1.3_3022_5000000_4e-07_0.052449_4e-07.png
                gene_name: CLSTN1
               theta_stop: 2.3 
                    nperm: 5000000 
                     p_ks: 4.00e-07 
        ci_ks_bounds_left: 4.84e-08 
       ci_ks_bounds_right: 1.44e-06 
                   p_cons: 0.052 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.053 
                  p_joint: 4.00e-07 
     ci_joint_bounds_left: 4.84e-08 
    ci_joint_bounds_right: 1.44e-06 

Current progress: 40 percent done.
CLEC1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.230335e-03	ci left: 9.798420e-01	ci right 9.850715e-01	k: 9826	n:10000
Cons ci ratio: 4.406368e-02	ci left: 4.319352e-01	ci right 4.514988e-01	k: 4417	n:10000
KS ci ratio: 7.537082e-02	ci left: 2.048126e-01	ci right 2.209550e-01	k: 2128	n:10000
CLEC1A   10000 perm   1 sec   (7173 perm/sec)   p_kst 2.128000e-01   p_cons 4.417000e-01   p_joint 9.826000e-01

Outputting figure to mutsig2_images.part000000000039/CLEC1A.2_867_10000_0.2128_0.4417_0.9826.png
                gene_name: CLEC1A
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 60 percent done.
CLK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.591382e-02	ci left: 5.337760e-01	ci right 5.533986e-01	k: 5436	n:10000
KS ci ratio: 1.275454e-01	ci left: 8.077027e-02	ci right 9.187210e-02	k: 862	n:10000
CLK3   10000 perm   2 sec   (6274 perm/sec)   p_kst 8.620000e-02   p_cons 5.436000e-01   p_joint 1

Joint ci ratio: 6.494151e-02	ci left: 1.490725e-01	ci right 1.591283e-01	k: 3081	n:20000
Cons ci ratio: 2.649357e-02	ci left: 5.155997e-01	ci right 5.294938e-01	k: 10451	n:20000
KS ci ratio: 8.987697e-02	ci left: 8.293337e-02	ci right 9.078723e-02	k: 1736	n:20000
CLK3   20000 perm   4 sec   (5582 perm/sec)   p_kst 8.680000e-02   p_cons 5.225500e-01   p_joint 1.540500e-01

Outputting figure to mutsig2_images.part000000000039/CLK3.2_1969_20000_0.0868_0.52255_0.15405.png
                gene_name: CLK3
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.087 
        ci_ks_bounds_left: 0.083 
       ci_ks_bounds_right: 0.091 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 80 percent done.
CLMN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.155646e-02	ci left: 9.146125e-01	ci right 9.253413e-01	k: 9201	n:10000
Cons ci ratio: 2.198608e-02	ci left: 7.522125e-01	ci right 7.690354e-01	k: 7607	n:10000
KS ci ratio: 5.193970e-02	ci left: 3.533674e-01	ci right 3.723125e-01	k: 3628	n:10000
CLMN   10000 perm   2 sec   (5976 perm/sec)   p_kst 3.628000e-01   p_cons 7.607000e-01   p_joint 9.201000e-01

Outputting figure to mutsig2_images.part000000000039/CLMN.2_3061_10000_0.3628_0.7607_0.9201.png
                gene_name: CLMN
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.93 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000039
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 39 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1651>
Subject: Job 9877020: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1651>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000040> was used as the working directory.
Started at Fri Oct  5 22:35:19 2012
Results reported at Sat Oct  6 01:37:53 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000040.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000040.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 40  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000040.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  11073.18 sec.
    Max Memory :      2326 MB
    Max Swap   :      4824 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
40
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 40
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 40: processing genes 3537 - 3627
Calculating significance of each gene.
Using projection method.
3537	CLVS1	1.566992e-03
3538	CLVS2	1
3539	CLYBL	1
3540	CMA1	4.284475e-02
3541	CMAS	1
3542	CMBL	1
3543	CMC1	1
3544	CMIP	1
3545	CMKLR1	1
3546	CMPK1	1
3547	CMPK2	1
3548	CMTM1	1
3549	CMTM2	1
3550	CMTM3	1
3551	CMTM4	1
3552	CMTM5	1
3553	CMTM6	1
3554	CMTM7	1
3555	CMTM8	1
3556	CMYA5	1
3557	CNBD1	1
3558	CNBP	1
3559	CNDP1	7.438978e-02
3560	CNDP2	1
3561	CNFN	1
3562	CNGA1	1
3563	CNGA2	1.825246e-01
3564	CNGA3	1.263514e-01
3565	CNGA4	7.371177e-02
3566	CNGB1	1
3567	CNGB3	1
3568	CNIH	1
3569	CNIH2	1
3570	CNIH3	1
3571	CNIH4	1
3572	CNKSR1	1
3573	CNKSR2	2.405393e-01
3574	CNKSR3	1
3575	CNN1	1
3576	CNN2	1
3577	CNN3	1
3578	CNNM1	1
In gene CNNM2 the following bins exceed PROBCAP:
    PRAD-CH-5765	categ 6	N = 2305    n = 1	mu =   3.34e-07
3579	CNNM2	1.023830e-01
3580	CNNM3	1
3581	CNNM4	2.291169e-01
3582	CNO	1
3583	CNOT1	3.762775e-01
3584	CNOT10	1
3585	CNOT2	1
3586	CNOT3	2.480650e-01
3587	CNOT4	1
3588	CNOT6	1
3589	CNOT6L	1
3590	CNOT7	1
3591	CNOT8	1
3592	CNP	1
3593	CNPY1	1
3594	CNPY2	1
3595	CNPY3	1
3596	CNPY4	1
3597	CNR1	1
3598	CNR2	1
3599	CNRIP1	1
3600	CNST	1
3601	CNTD1	1
3602	CNTD2	1
3603	CNTF	1
3604	CNTFR	1
3605	CNTLN	1
3606	CNTN1	1
3607	CNTN2	1
3608	CNTN3	1
In gene CNTN4 the following bins exceed PROBCAP:
    PRAD-CH-5761	categ 6	N = 3169    n = 1	mu =   2.99e-07
3609	CNTN4	1.388620e-01
3610	CNTN5	2.254215e-01
In gene CNTN6 the following bins exceed PROBCAP:
    PRAD-EJ-5517	categ 6	N = 3175    n = 1	mu =   1.98e-07
3611	CNTN6	1.996538e-02
3612	CNTNAP1	1
3613	CNTNAP2	1
3614	CNTNAP3	1
3615	CNTNAP4	1
3616	CNTNAP5	7.297369e-05
3617	CNTROB	1
3618	COASY	1
3619	COBL	7.939986e-02
3620	COBLL1	1
3621	COBRA1	1
3622	COCH	1
3623	COG1	1
3624	COG2	1
3625	COG3	1.737545e-01
3626	COG4	1
3627	COG5	1
Done

Running MutSig 2:
Scatter job 40: processing genes 3537 - 3627
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CNTNAP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.566713e-02	ci left: 6.908102e-01	ci right 7.088733e-01	k: 6999	n:10000
Cons ci ratio: 1.837348e-02	ci left: 8.122256e-01	ci right 8.273876e-01	k: 8199	n:10000
KS ci ratio: 4.505088e-02	ci left: 4.210658e-01	ci right 4.405745e-01	k: 4308	n:10000
CNTNAP5   10000 perm   2 sec   (4537 perm/sec)   p_kst 4.308000e-01   p_cons 8.199000e-01   p_joint 6.999000e-01

Outputting figure to mutsig2_images.part000000000040/CNTNAP5.5_4017_10000_0.4308_0.8199_0.6999.png
                gene_name: CNTNAP5
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 20 percent done.
CLVS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.231530e-02	ci left: 2.188203e-01	ci right 2.353390e-01	k: 2270	n:10000
KS ci ratio: 2.187136e-02	ci left: 7.541348e-01	ci right 7.709120e-01	k: 7626	n:10000
CLVS1   10000 perm   2 sec   (5667 perm/sec)   p_kst 7.626000e-01   p_cons 2.270000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000040/CLVS1.2_1085_10000_0.7626_0.227_1.png
                gene_name: CLVS1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
CNNM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.473772e-02	ci left: 8.695851e-01	ci right 8.825950e-01	k: 8762	n:10000
Cons ci ratio: 3.722914e-02	ci left: 5.158568e-01	ci right 5.355282e-01	k: 5257	n:10000
KS ci ratio: 2.366395e-02	ci left: 7.241112e-01	ci right 7.415529e-01	k: 7329	n:10000
CNNM2   10000 perm   2 sec   (5085 perm/sec)   p_kst 7.329000e-01   p_cons 5.257000e-01   p_joint 8.762000e-01

Outputting figure to mutsig2_images.part000000000040/CNNM2.2_2702_10000_0.7329_0.5257_0.8762.png
                gene_name: CNNM2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 60 percent done.
CNTN6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.420449e-03	ci left: 9.949036e-01	ci right 9.973936e-01	k: 9963	n:10000
Cons ci ratio: 1.307051e-02	ci left: 8.939531e-01	ci right 9.058128e-01	k: 9000	n:10000
KS ci ratio: 6.927536e-03	ci left: 9.662559e-01	ci right 9.730668e-01	k: 9698	n:10000
CNTN6   10000 perm   3 sec   (3477 perm/sec)   p_kst 9.698000e-01   p_cons 9.000000e-01   p_joint 9.963000e-01

Outputting figure to mutsig2_images.part000000000040/CNTN6.2_3175_10000_0.9698_0.9_0.9963.png
                gene_name: CNTN6
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1.00 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 1.00 

Current progress: 80 percent done.
COBL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 1.860549e-01	ci left: 3.853448e-02	ci right 4.653479e-02	k: 424	n:10000
KS ci ratio: 1.959510e+00	ci left: 6.187149e-05	ci right 8.764745e-04	k: 3	n:10000
COBL   10000 perm   3 sec   (3327 perm/sec)   p_kst 3.000000e-04   p_cons 4.240000e-02   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 1.357013e-01	ci left: 3.732625e-02	ci right 4.280850e-02	k: 800	n:20000
KS ci ratio: 1.600053e+00	ci left: 8.117914e-05	ci right 5.833193e-04	k: 5	n:20000
COBL   20000 perm   6 sec   (3190 perm/sec)   p_kst 2.500000e-04   p_cons 4.000000e-02   p_joint 0

Joint ci ratio: 7.684293e-01	ci left: 5.393597e-04	ci right 1.229920e-03	k: 25	n:30000
Cons ci ratio: 1.096412e-01	ci left: 3.862178e-02	ci right 4.313435e-02	k: 1225	n:30000
KS ci ratio: 1.306449e+00	ci left: 1.151345e-04	ci right 5.253717e-04	k: 8	n:30000
COBL   30000 perm   9 sec   (3464 perm/sec)   p_kst 2.666667e-04   p_cons 4.083333e-02   p_joint 8.333333e-04

Joint ci ratio: 7.999166e-01	ci left: 3.645345e-04	ci right 8.626582e-04	k: 23	n:40000
Cons ci ratio: 9.533818e-02	ci left: 3.861352e-02	ci right 4.250354e-02	k: 1621	n:40000
KS ci ratio: 1.047468e+00	ci left: 1.730598e-04	ci right 5.556958e-04	k: 13	n:40000
COBL   40000 perm   11 sec   (3577 perm/sec)   p_kst 3.250000e-04   p_cons 4.052500e-02   p_joint 5.750000e-04

Joint ci ratio: 9.798334e-01	ci left: 1.679171e-04	ci right 4.947562e-04	k: 15	n:50000
Cons ci ratio: 8.541606e-02	ci left: 3.869089e-02	ci right 4.216272e-02	k: 2020	n:50000
KS ci ratio: 8.763546e-01	ci left: 2.287998e-04	ci right 5.933537e-04	k: 19	n:50000
COBL   50000 perm   14 sec   (3631 perm/sec)   p_kst 3.800000e-04   p_cons 4.040000e-02   p_joint 3.000000e-04

Joint ci ratio: 9.798612e-01	ci left: 1.399296e-04	ci right 4.123035e-04	k: 15	n:60000
Cons ci ratio: 7.806121e-02	ci left: 3.875670e-02	ci right 4.192130e-02	k: 2419	n:60000
KS ci ratio: 8.172130e-01	ci left: 2.298019e-04	ci right 5.550854e-04	k: 22	n:60000
COBL   60000 perm   16 sec   (3653 perm/sec)   p_kst 3.666667e-04   p_cons 4.031667e-02   p_joint 2.500000e-04

Joint ci ratio: 1.239515e+00	ci left: 5.879268e-05	ci right 2.440545e-04	k: 9	n:70000
Cons ci ratio: 7.214212e-02	ci left: 3.900949e-02	ci right 4.194304e-02	k: 2832	n:70000
KS ci ratio: 7.838544e-01	ci left: 2.196870e-04	ci right 5.101016e-04	k: 24	n:70000
COBL   70000 perm   19 sec   (3677 perm/sec)   p_kst 3.428571e-04   p_cons 4.045714e-02   p_joint 1.285714e-04

Joint ci ratio: 1.600263e+00	ci left: 2.029388e-05	ci right 1.458481e-04	k: 5	n:80000
Cons ci ratio: 6.757766e-02	ci left: 3.899686e-02	ci right 4.173660e-02	k: 3228	n:80000
KS ci ratio: 7.542723e-01	ci left: 2.123114e-04	ci right 4.761643e-04	k: 26	n:80000
COBL   80000 perm   22 sec   (3667 perm/sec)   p_kst 3.250000e-04   p_cons 4.035000e-02   p_joint 6.250000e-05

Joint ci ratio: 1.385860e+00	ci left: 3.127125e-05	ci right 1.602453e-04	k: 7	n:90000
Cons ci ratio: 6.687027e-02	ci left: 3.554659e-02	ci right 3.801672e-02	k: 3309	n:90000
KS ci ratio: 7.406910e-01	ci left: 1.977109e-04	ci right 4.364545e-04	k: 27	n:90000
COBL   90000 perm   25 sec   (3662 perm/sec)   p_kst 3.000000e-04   p_cons 3.676667e-02   p_joint 7.777778e-05

Joint ci ratio: 1.385867e+00	ci left: 2.814408e-05	ci right 1.442214e-04	k: 7	n:100000
Cons ci ratio: 6.356245e-02	ci left: 3.547416e-02	ci right 3.781281e-02	k: 3663	n:100000
KS ci ratio: 7.155799e-01	ci left: 1.942259e-04	ci right 4.164620e-04	k: 29	n:100000
COBL   100000 perm   28 sec   (3603 perm/sec)   p_kst 2.900000e-04   p_cons 3.663000e-02   p_joint 7.000000e-05

Joint ci ratio: 1.239551e+00	ci left: 3.741314e-05	ci right 1.553107e-04	k: 9	n:110000
Cons ci ratio: 5.772457e-02	ci left: 3.907369e-02	ci right 4.140517e-02	k: 4425	n:110000
KS ci ratio: 6.822789e-01	ci left: 1.989898e-04	ci right 4.106522e-04	k: 32	n:110000
COBL   110000 perm   31 sec   (3543 perm/sec)   p_kst 2.909091e-04   p_cons 4.022727e-02   p_joint 8.181818e-05

Joint ci ratio: 1.181865e+00	ci left: 3.996227e-05	ci right 1.532476e-04	k: 10	n:120000
Cons ci ratio: 5.526329e-02	ci left: 3.912847e-02	ci right 4.136048e-02	k: 4828	n:120000
KS ci ratio: 6.625015e-01	ci left: 1.962243e-04	ci right 3.959076e-04	k: 34	n:120000
COBL   120000 perm   34 sec   (3488 perm/sec)   p_kst 2.833333e-04   p_cons 4.023333e-02   p_joint 8.333333e-05

Joint ci ratio: 1.131550e+00	ci left: 4.224043e-05	ci right 1.513952e-04	k: 11	n:130000
Cons ci ratio: 5.309219e-02	ci left: 3.917662e-02	ci right 4.132088e-02	k: 5231	n:130000
KS ci ratio: 6.276058e-01	ci left: 2.068624e-04	ci right 4.011933e-04	k: 38	n:130000
COBL   130000 perm   39 sec   (3362 perm/sec)   p_kst 2.923077e-04   p_cons 4.023846e-02   p_joint 8.461538e-05

Joint ci ratio: 1.131554e+00	ci left: 3.922321e-05	ci right 1.405816e-04	k: 11	n:140000
Cons ci ratio: 5.106873e-02	ci left: 3.935341e-02	ci right 4.142283e-02	k: 5653	n:140000
KS ci ratio: 6.121093e-01	ci left: 2.041261e-04	ci right 3.890417e-04	k: 40	n:140000
COBL   140000 perm   43 sec   (3292 perm/sec)   p_kst 2.857143e-04   p_cons 4.037857e-02   p_joint 7.857143e-05

Joint ci ratio: 1.087162e+00	ci left: 4.133783e-05	ci right 1.397397e-04	k: 12	n:150000
Cons ci ratio: 4.943436e-02	ci left: 3.923787e-02	ci right 4.123329e-02	k: 6034	n:150000
KS ci ratio: 5.657108e-01	ci left: 2.302343e-04	ci right 4.166454e-04	k: 47	n:150000
COBL   150000 perm   47 sec   (3159 perm/sec)   p_kst 3.133333e-04   p_cons 4.022667e-02   p_joint 8.000000e-05

Joint ci ratio: 9.799479e-01	ci left: 5.247208e-05	ci right 1.546217e-04	k: 15	n:160000
Cons ci ratio: 4.786204e-02	ci left: 3.927363e-02	ci right 4.120558e-02	k: 6437	n:160000
KS ci ratio: 5.333527e-01	ci left: 2.481385e-04	ci right 4.332611e-04	k: 53	n:160000
COBL   160000 perm   52 sec   (3101 perm/sec)   p_kst 3.312500e-04   p_cons 4.023125e-02   p_joint 9.375000e-05

Joint ci ratio: 1.012092e+00	ci left: 4.502383e-05	ci right 1.381704e-04	k: 14	n:170000
Cons ci ratio: 4.645203e-02	ci left: 3.927116e-02	ci right 4.114456e-02	k: 6834	n:170000
KS ci ratio: 5.284856e-01	ci left: 2.386350e-04	ci right 4.144404e-04	k: 54	n:170000
COBL   170000 perm   55 sec   (3093 perm/sec)   p_kst 3.176471e-04   p_cons 4.020000e-02   p_joint 8.235294e-05

Joint ci ratio: 9.799537e-01	ci left: 4.664176e-05	ci right 1.374419e-04	k: 15	n:180000
Cons ci ratio: 4.497537e-02	ci left: 3.958297e-02	ci right 4.140965e-02	k: 7288	n:180000
KS ci ratio: 5.018181e-01	ci left: 2.543778e-04	ci right 4.290455e-04	k: 60	n:180000
COBL   180000 perm   59 sec   (3070 perm/sec)   p_kst 3.333333e-04   p_cons 4.048889e-02   p_joint 8.333333e-05

Joint ci ratio: 1.087172e+00	ci left: 3.263502e-05	ci right 1.103215e-04	k: 12	n:190000
Cons ci ratio: 4.375787e-02	ci left: 3.963883e-02	ci right 4.141733e-02	k: 7699	n:190000
KS ci ratio: 4.861317e-01	ci left: 2.594188e-04	ci right 4.301198e-04	k: 64	n:190000
COBL   190000 perm   62 sec   (3045 perm/sec)   p_kst 3.368421e-04   p_cons 4.052105e-02   p_joint 6.315789e-05

Joint ci ratio: 1.087174e+00	ci left: 3.100325e-05	ci right 1.048056e-04	k: 12	n:200000
Cons ci ratio: 4.261502e-02	ci left: 3.972436e-02	ci right 4.145899e-02	k: 8117	n:200000
KS ci ratio: 4.824378e-01	ci left: 2.508368e-04	ci right 4.142207e-04	k: 65	n:200000
COBL   200000 perm   67 sec   (3003 perm/sec)   p_kst 3.250000e-04   p_cons 4.058500e-02   p_joint 6.000000e-05

Joint ci ratio: 1.047627e+00	ci left: 3.296208e-05	ci right 1.058567e-04	k: 13	n:210000
Cons ci ratio: 4.165145e-02	ci left: 3.962785e-02	ci right 4.131820e-02	k: 8498	n:210000
KS ci ratio: 4.752917e-01	ci left: 2.472658e-04	ci right 4.051617e-04	k: 67	n:210000
COBL   210000 perm   71 sec   (2977 perm/sec)   p_kst 3.190476e-04   p_cons 4.046667e-02   p_joint 6.190476e-05

Joint ci ratio: 1.047628e+00	ci left: 3.146378e-05	ci right 1.010451e-04	k: 13	n:220000
Cons ci ratio: 4.060057e-02	ci left: 3.982409e-02	ci right 4.147895e-02	k: 8942	n:220000
KS ci ratio: 4.556131e-01	ci left: 2.601012e-04	ci right 4.171937e-04	k: 73	n:220000
COBL   220000 perm   74 sec   (2959 perm/sec)   p_kst 3.318182e-04   p_cons 4.064545e-02   p_joint 5.909091e-05

Joint ci ratio: 7.687301e-01	ci left: 7.034329e-05	ci right 1.604521e-04	k: 25	n:230000
Cons ci ratio: 3.973362e-02	ci left: 3.979273e-02	ci right 4.141017e-02	k: 9337	n:230000
KS ci ratio: 4.437764e-01	ci left: 2.642139e-04	ci right 4.184033e-04	k: 77	n:230000
COBL   230000 perm   78 sec   (2941 perm/sec)   p_kst 3.347826e-04   p_cons 4.059565e-02   p_joint 1.086957e-04

Joint ci ratio: 7.543603e-01	ci left: 7.076811e-05	ci right 1.587294e-04	k: 26	n:240000
Cons ci ratio: 3.890327e-02	ci left: 3.979736e-02	ci right 4.138043e-02	k: 9740	n:240000
KS ci ratio: 4.381954e-01	ci left: 2.606127e-04	ci right 4.102232e-04	k: 79	n:240000
COBL   240000 perm   82 sec   (2925 perm/sec)   p_kst 3.291667e-04   p_cons 4.058333e-02   p_joint 1.083333e-04

Joint ci ratio: 7.407674e-01	ci left: 7.117385e-05	ci right 1.571305e-04	k: 27	n:250000
Cons ci ratio: 3.812878e-02	ci left: 3.979005e-02	ci right 4.134062e-02	k: 10140	n:250000
KS ci ratio: 4.154444e-01	ci left: 2.823236e-04	ci right 4.336561e-04	k: 88	n:250000
COBL   250000 perm   87 sec   (2883 perm/sec)   p_kst 3.520000e-04   p_cons 4.056000e-02   p_joint 1.080000e-04

Joint ci ratio: 7.278837e-01	ci left: 7.156191e-05	ci right 1.556416e-04	k: 28	n:260000
Cons ci ratio: 3.743580e-02	ci left: 3.970736e-02	ci right 4.122598e-02	k: 10520	n:260000
KS ci ratio: 4.108549e-01	ci left: 2.783575e-04	ci right 4.254650e-04	k: 90	n:260000
COBL   260000 perm   91 sec   (2864 perm/sec)   p_kst 3.461538e-04   p_cons 4.046154e-02   p_joint 1.076923e-04

Joint ci ratio: 6.929223e-01	ci left: 7.801239e-05	ci right 1.629665e-04	k: 31	n:270000
Cons ci ratio: 3.678631e-02	ci left: 3.961635e-02	ci right 4.110465e-02	k: 10896	n:270000
KS ci ratio: 4.042460e-01	ci left: 2.780198e-04	ci right 4.219514e-04	k: 93	n:270000
COBL   270000 perm   95 sec   (2845 perm/sec)   p_kst 3.444444e-04   p_cons 4.035556e-02   p_joint 1.148148e-04

Joint ci ratio: 6.823430e-01	ci left: 7.817262e-05	ci right 1.613335e-04	k: 32	n:280000
Cons ci ratio: 3.613943e-02	ci left: 3.959579e-02	ci right 4.105661e-02	k: 11290	n:280000
KS ci ratio: 4.000140e-01	ci left: 2.745108e-04	ci right 4.147435e-04	k: 95	n:280000
COBL   280000 perm   99 sec   (2825 perm/sec)   p_kst 3.392857e-04   p_cons 4.032143e-02   p_joint 1.142857e-04

Joint ci ratio: 6.823444e-01	ci left: 7.547697e-05	ci right 1.557704e-04	k: 32	n:290000
Cons ci ratio: 3.549229e-02	ci left: 3.964865e-02	ci right 4.108469e-02	k: 11705	n:290000
KS ci ratio: 3.979484e-01	ci left: 2.681470e-04	ci right 4.042350e-04	k: 96	n:290000
COBL   290000 perm   103 sec   (2805 perm/sec)   p_kst 3.310345e-04   p_cons 4.036207e-02   p_joint 1.103448e-04

Joint ci ratio: 6.823457e-01	ci left: 7.296103e-05	ci right 1.505782e-04	k: 32	n:300000
Cons ci ratio: 3.492228e-02	ci left: 3.960235e-02	ci right 4.101321e-02	k: 12091	n:300000
KS ci ratio: 3.959145e-01	ci left: 2.622091e-04	ci right 3.944252e-04	k: 97	n:300000
COBL   300000 perm   108 sec   (2785 perm/sec)   p_kst 3.233333e-04   p_cons 4.030333e-02   p_joint 1.066667e-04

Joint ci ratio: 8.357158e-01	ci left: 4.193380e-05	ci right 1.035489e-04	k: 21	n:310000
Cons ci ratio: 3.439611e-02	ci left: 3.952082e-02	ci right 4.090715e-02	k: 12465	n:310000
KS ci ratio: 3.880734e-01	ci left: 2.653823e-04	ci right 3.958705e-04	k: 101	n:310000
COBL   310000 perm   112 sec   (2764 perm/sec)   p_kst 3.258065e-04   p_cons 4.020968e-02   p_joint 6.774194e-05

Joint ci ratio: 8.357168e-01	ci left: 4.062335e-05	ci right 1.003130e-04	k: 21	n:320000
Cons ci ratio: 3.383541e-02	ci left: 3.957472e-02	ci right 4.093987e-02	k: 12881	n:320000
KS ci ratio: 3.806804e-01	ci left: 2.683813e-04	ci right 3.972016e-04	k: 105	n:320000
COBL   320000 perm   117 sec   (2737 perm/sec)   p_kst 3.281250e-04   p_cons 4.025313e-02   p_joint 6.562500e-05

Joint ci ratio: 7.839691e-01	ci left: 4.659827e-05	ci right 1.082105e-04	k: 24	n:330000
Cons ci ratio: 3.328562e-02	ci left: 3.966160e-02	ci right 4.100709e-02	k: 13309	n:330000
KS ci ratio: 3.736945e-01	ci left: 2.712208e-04	ci right 3.984302e-04	k: 109	n:330000
COBL   330000 perm   122 sec   (2710 perm/sec)   p_kst 3.303030e-04   p_cons 4.033030e-02   p_joint 7.272727e-05

Joint ci ratio: 7.839700e-01	ci left: 4.522772e-05	ci right 1.050279e-04	k: 24	n:340000
Cons ci ratio: 3.275433e-02	ci left: 3.976105e-02	ci right 4.108798e-02	k: 13743	n:340000
KS ci ratio: 3.703436e-01	ci left: 2.685760e-04	ci right 3.931417e-04	k: 111	n:340000
COBL   340000 perm   127 sec   (2679 perm/sec)   p_kst 3.264706e-04   p_cons 4.042059e-02   p_joint 7.058824e-05

Joint ci ratio: 7.839709e-01	ci left: 4.393549e-05	ci right 1.020271e-04	k: 24	n:350000
Cons ci ratio: 3.227854e-02	ci left: 3.978126e-02	ci right 4.108922e-02	k: 14151	n:350000
KS ci ratio: 3.703454e-01	ci left: 2.609022e-04	ci right 3.819094e-04	k: 111	n:350000
COBL   350000 perm   132 sec   (2659 perm/sec)   p_kst 3.171429e-04   p_cons 4.043143e-02   p_joint 6.857143e-05

Joint ci ratio: 5.237906e-01	ci left: 1.150951e-04	ci right 1.988567e-04	k: 55	n:360000
Cons ci ratio: 3.184685e-02	ci left: 3.974259e-02	ci right 4.103149e-02	k: 14538	n:360000
KS ci ratio: 3.639037e-01	ci left: 2.637411e-04	ci right 3.834324e-04	k: 115	n:360000
COBL   360000 perm   137 sec   (2636 perm/sec)   p_kst 3.194444e-04   p_cons 4.038333e-02   p_joint 1.527778e-04

Joint ci ratio: 5.102992e-01	ci left: 1.190341e-04	ci right 2.026398e-04	k: 58	n:370000
Cons ci ratio: 3.139479e-02	ci left: 3.979733e-02	ci right 4.106934e-02	k: 14959	n:370000
KS ci ratio: 3.533953e-01	ci left: 2.738279e-04	ci right 3.936852e-04	k: 122	n:370000
COBL   370000 perm   142 sec   (2613 perm/sec)   p_kst 3.297297e-04   p_cons 4.042973e-02   p_joint 1.567568e-04

Joint ci ratio: 4.977992e-01	ci left: 1.227921e-04	ci right 2.061981e-04	k: 61	n:380000
Cons ci ratio: 3.094257e-02	ci left: 3.989632e-02	ci right 4.115280e-02	k: 15398	n:380000
KS ci ratio: 3.450777e-01	ci left: 2.810268e-04	ci right 4.004936e-04	k: 128	n:380000
COBL   380000 perm   147 sec   (2592 perm/sec)   p_kst 3.368421e-04   p_cons 4.052105e-02   p_joint 1.605263e-04

Joint ci ratio: 4.978003e-01	ci left: 1.196435e-04	ci right 2.009110e-04	k: 61	n:390000
Cons ci ratio: 3.055260e-02	ci left: 3.988091e-02	ci right 4.112080e-02	k: 15794	n:390000
KS ci ratio: 3.437490e-01	ci left: 2.761632e-04	ci right 3.930098e-04	k: 129	n:390000
COBL   390000 perm   152 sec   (2565 perm/sec)   p_kst 3.307692e-04   p_cons 4.049744e-02   p_joint 1.564103e-04

Joint ci ratio: 4.938341e-01	ci left: 1.188396e-04	ci right 1.986987e-04	k: 62	n:400000
Cons ci ratio: 3.017313e-02	ci left: 3.987629e-02	ci right 4.110038e-02	k: 16194	n:400000
KS ci ratio: 3.398502e-01	ci left: 2.761154e-04	ci right 3.913259e-04	k: 132	n:400000
COBL   400000 perm   157 sec   (2541 perm/sec)   p_kst 3.300000e-04   p_cons 4.048500e-02   p_joint 1.550000e-04

Joint ci ratio: 4.899612e-01	ci left: 1.180774e-04	ci right 1.965918e-04	k: 63	n:410000
Cons ci ratio: 2.975611e-02	ci left: 4.000518e-02	ci right 4.121596e-02	k: 16649	n:410000
KS ci ratio: 3.373239e-01	ci left: 2.738441e-04	ci right 3.870727e-04	k: 134	n:410000
COBL   410000 perm   163 sec   (2514 perm/sec)   p_kst 3.268293e-04   p_cons 4.060732e-02   p_joint 1.536585e-04

Joint ci ratio: 4.899621e-01	ci left: 1.152660e-04	ci right 1.919111e-04	k: 63	n:420000
Cons ci ratio: 2.940881e-02	ci left: 3.998855e-02	ci right 4.118446e-02	k: 17045	n:420000
KS ci ratio: 3.360824e-01	ci left: 2.695036e-04	ci right 3.804384e-04	k: 135	n:420000
COBL   420000 perm   169 sec   (2490 perm/sec)   p_kst 3.214286e-04   p_cons 4.058333e-02   p_joint 1.500000e-04

Joint ci ratio: 4.824811e-01	ci left: 1.166661e-04	ci right 1.926654e-04	k: 65	n:430000
Cons ci ratio: 2.905864e-02	ci left: 4.001204e-02	ci right 4.119416e-02	k: 17458	n:430000
KS ci ratio: 3.348545e-01	ci left: 2.653657e-04	ci right 3.741119e-04	k: 136	n:430000
COBL   430000 perm   174 sec   (2468 perm/sec)   p_kst 3.162791e-04   p_cons 4.060000e-02   p_joint 1.511628e-04

Joint ci ratio: 4.753326e-01	ci left: 1.180112e-04	ci right 1.933770e-04	k: 67	n:440000
Cons ci ratio: 2.870060e-02	ci left: 4.008870e-02	ci right 4.125826e-02	k: 17895	n:440000
KS ci ratio: 3.300703e-01	ci left: 2.676668e-04	ci right 3.754563e-04	k: 140	n:440000
COBL   440000 perm   180 sec   (2448 perm/sec)   p_kst 3.181818e-04   p_cons 4.067045e-02   p_joint 1.522727e-04

Joint ci ratio: 4.718758e-01	ci left: 1.173455e-04	ci right 1.915655e-04	k: 68	n:450000
Cons ci ratio: 2.838455e-02	ci left: 4.008259e-02	ci right 4.123889e-02	k: 18296	n:450000
KS ci ratio: 3.266140e-01	ci left: 2.678359e-04	ci right 3.743270e-04	k: 143	n:450000
COBL   450000 perm   186 sec   (2426 perm/sec)   p_kst 3.177778e-04   p_cons 4.065778e-02   p_joint 1.511111e-04

Joint ci ratio: 4.684935e-01	ci left: 1.167108e-04	ci right 1.898308e-04	k: 69	n:460000
Cons ci ratio: 2.808340e-02	ci left: 4.006386e-02	ci right 4.120715e-02	k: 18691	n:460000
KS ci ratio: 3.254866e-01	ci left: 2.640093e-04	ci right 3.685409e-04	k: 144	n:460000
COBL   460000 perm   191 sec   (2406 perm/sec)   p_kst 3.130435e-04   p_cons 4.063261e-02   p_joint 1.500000e-04

Joint ci ratio: 4.619406e-01	ci left: 1.179839e-04	ci right 1.905427e-04	k: 71	n:470000
Cons ci ratio: 2.781520e-02	ci left: 3.998047e-02	ci right 4.111031e-02	k: 19055	n:470000
KS ci ratio: 3.243708e-01	ci left: 2.603461e-04	ci right 3.630003e-04	k: 145	n:470000
COBL   470000 perm   197 sec   (2387 perm/sec)   p_kst 3.085106e-04   p_cons 4.054255e-02   p_joint 1.510638e-04

Joint ci ratio: 4.587659e-01	ci left: 1.173676e-04	ci right 1.888965e-04	k: 72	n:480000
Cons ci ratio: 2.751248e-02	ci left: 4.001857e-02	ci right 4.113699e-02	k: 19476	n:480000
KS ci ratio: 3.221720e-01	ci left: 2.587508e-04	ci right 3.599415e-04	k: 147	n:480000
COBL   480000 perm   203 sec   (2369 perm/sec)   p_kst 3.062500e-04   p_cons 4.057500e-02   p_joint 1.500000e-04

Joint ci ratio: 4.466899e-01	ci left: 1.222047e-04	ci right 1.941295e-04	k: 76	n:490000
Cons ci ratio: 2.722442e-02	ci left: 4.004098e-02	ci right 4.114813e-02	k: 19890	n:490000
KS ci ratio: 3.179043e-01	ci left: 2.609778e-04	ci right 3.614125e-04	k: 151	n:490000
COBL   490000 perm   208 sec   (2352 perm/sec)   p_kst 3.081633e-04   p_cons 4.059184e-02   p_joint 1.551020e-04

Joint ci ratio: 4.526082e-01	ci left: 1.162136e-04	ci right 1.857969e-04	k: 74	n:500000
Cons ci ratio: 2.694038e-02	ci left: 4.007647e-02	ci right 4.117286e-02	k: 20311	n:500000
KS ci ratio: 3.128006e-01	ci left: 2.649670e-04	ci right 3.649729e-04	k: 156	n:500000
COBL   500000 perm   214 sec   (2334 perm/sec)   p_kst 3.120000e-04   p_cons 4.062200e-02   p_joint 1.480000e-04

Joint ci ratio: 4.466913e-01	ci left: 1.174122e-04	ci right 1.865168e-04	k: 76	n:510000
Cons ci ratio: 2.666371e-02	ci left: 4.011452e-02	ci right 4.120051e-02	k: 20734	n:510000
KS ci ratio: 3.118098e-01	ci left: 2.615786e-04	ci right 3.599307e-04	k: 157	n:510000
COBL   510000 perm   220 sec   (2316 perm/sec)   p_kst 3.078431e-04   p_cons 4.065490e-02   p_joint 1.490196e-04

Joint ci ratio: 4.619440e-01	ci left: 1.066392e-04	ci right 1.722216e-04	k: 71	n:520000
Cons ci ratio: 2.639410e-02	ci left: 4.015499e-02	ci right 4.123091e-02	k: 21159	n:520000
KS ci ratio: 3.079360e-01	ci left: 2.636426e-04	ci right 3.612974e-04	k: 161	n:520000
COBL   520000 perm   226 sec   (2298 perm/sec)   p_kst 3.096154e-04   p_cons 4.069038e-02   p_joint 1.365385e-04

Joint ci ratio: 4.556585e-01	ci left: 1.079644e-04	ci right 1.731791e-04	k: 73	n:530000
Cons ci ratio: 2.614829e-02	ci left: 4.014710e-02	ci right 4.121264e-02	k: 21559	n:530000
KS ci ratio: 3.051238e-01	ci left: 2.638932e-04	ci right 3.605749e-04	k: 164	n:530000
COBL   530000 perm   233 sec   (2278 perm/sec)   p_kst 3.094340e-04   p_cons 4.067736e-02   p_joint 1.377358e-04

Joint ci ratio: 4.556591e-01	ci left: 1.059651e-04	ci right 1.699721e-04	k: 73	n:540000
Cons ci ratio: 2.591598e-02	ci left: 4.011931e-02	ci right 4.117451e-02	k: 21948	n:540000
KS ci ratio: 3.014910e-01	ci left: 2.658501e-04	ci right 3.618669e-04	k: 168	n:540000
COBL   540000 perm   239 sec   (2260 perm/sec)   p_kst 3.111111e-04   p_cons 4.064444e-02   p_joint 1.351852e-04

Joint ci ratio: 4.556597e-01	ci left: 1.040384e-04	ci right 1.668818e-04	k: 73	n:550000
Cons ci ratio: 2.568857e-02	ci left: 4.009618e-02	ci right 4.114139e-02	k: 22339	n:550000
KS ci ratio: 3.006035e-01	ci left: 2.626973e-04	ci right 3.572427e-04	k: 169	n:550000
COBL   550000 perm   245 sec   (2242 perm/sec)   p_kst 3.072727e-04   p_cons 4.061636e-02   p_joint 1.327273e-04

Joint ci ratio: 4.718830e-01	ci left: 9.429523e-05	ci right 1.539371e-04	k: 68	n:560000
Cons ci ratio: 2.546762e-02	ci left: 4.007215e-02	ci right 4.110761e-02	k: 22729	n:560000
KS ci ratio: 2.988510e-01	ci left: 2.613092e-04	ci right 3.547026e-04	k: 171	n:560000
COBL   560000 perm   252 sec   (2222 perm/sec)   p_kst 3.053571e-04   p_cons 4.058750e-02   p_joint 1.214286e-04

Joint ci ratio: 4.619468e-01	ci left: 9.728473e-05	ci right 1.571147e-04	k: 71	n:570000
Cons ci ratio: 2.523862e-02	ci left: 4.009084e-02	ci right 4.111734e-02	k: 23143	n:570000
KS ci ratio: 2.954352e-01	ci left: 2.632193e-04	ci right 3.560188e-04	k: 175	n:570000
COBL   570000 perm   259 sec   (2204 perm/sec)   p_kst 3.070175e-04   p_cons 4.060175e-02   p_joint 1.245614e-04

Joint ci ratio: 4.556613e-01	ci left: 9.865703e-05	ci right 1.582501e-04	k: 73	n:580000
Cons ci ratio: 2.501569e-02	ci left: 4.010894e-02	ci right 4.112669e-02	k: 23557	n:580000
KS ci ratio: 2.937711e-01	ci left: 2.618745e-04	ci right 3.535829e-04	k: 177	n:580000
COBL   580000 perm   265 sec   (2188 perm/sec)   p_kst 3.051724e-04   p_cons 4.061552e-02   p_joint 1.258621e-04

Joint ci ratio: 4.466959e-01	ci left: 1.014917e-04	ci right 1.612268e-04	k: 76	n:590000
Cons ci ratio: 2.482556e-02	ci left: 4.004221e-02	ci right 4.105044e-02	k: 23921	n:590000
KS ci ratio: 2.905247e-01	ci left: 2.637189e-04	ci right 3.548650e-04	k: 181	n:590000
COBL   590000 perm   272 sec   (2172 perm/sec)   p_kst 3.067797e-04   p_cons 4.054407e-02   p_joint 1.288136e-04

Joint ci ratio: 4.410051e-01	ci left: 1.027609e-04	ci right 1.622433e-04	k: 78	n:600000
Cons ci ratio: 2.462122e-02	ci left: 4.003573e-02	ci right 4.103538e-02	k: 24320	n:600000
KS ci ratio: 2.889417e-01	ci left: 2.624147e-04	ci right 3.525256e-04	k: 183	n:600000
COBL   600000 perm   278 sec   (2156 perm/sec)   p_kst 3.050000e-04   p_cons 4.053333e-02   p_joint 1.300000e-04

Joint ci ratio: 4.355263e-01	ci left: 1.039932e-04	ci right 1.632218e-04	k: 80	n:610000
Cons ci ratio: 2.442545e-02	ci left: 4.001808e-02	ci right 4.100924e-02	k: 24712	n:610000
KS ci ratio: 2.858511e-01	ci left: 2.641976e-04	ci right 3.537751e-04	k: 187	n:610000
COBL   610000 perm   285 sec   (2138 perm/sec)   p_kst 3.065574e-04   p_cons 4.051148e-02   p_joint 1.311475e-04

Joint ci ratio: 4.328626e-01	ci left: 1.037524e-04	ci right 1.623774e-04	k: 81	n:620000
Cons ci ratio: 2.423779e-02	ci left: 3.998981e-02	ci right 4.097255e-02	k: 25097	n:620000
KS ci ratio: 2.843429e-01	ci left: 2.629315e-04	ci right 3.515250e-04	k: 189	n:620000
COBL   620000 perm   292 sec   (2121 perm/sec)   p_kst 3.048387e-04   p_cons 4.047903e-02   p_joint 1.306452e-04

Joint ci ratio: 4.302472e-01	ci left: 1.035204e-04	ci right 1.615588e-04	k: 82	n:630000
Cons ci ratio: 2.404653e-02	ci left: 3.998772e-02	ci right 4.096255e-02	k: 25498	n:630000
KS ci ratio: 2.835980e-01	ci left: 2.602322e-04	ci right 3.476453e-04	k: 190	n:630000
COBL   630000 perm   299 sec   (2105 perm/sec)   p_kst 3.015873e-04   p_cons 4.047302e-02   p_joint 1.301587e-04

Joint ci ratio: 4.276787e-01	ci left: 1.032967e-04	ci right 1.607647e-04	k: 83	n:640000
Cons ci ratio: 2.384102e-02	ci left: 4.004631e-02	ci right 4.101411e-02	k: 25938	n:640000
KS ci ratio: 2.828590e-01	ci left: 2.576175e-04	ci right 3.438866e-04	k: 191	n:640000
COBL   640000 perm   306 sec   (2090 perm/sec)   p_kst 2.984375e-04   p_cons 4.052812e-02   p_joint 1.296875e-04

Joint ci ratio: 4.251556e-01	ci left: 1.030808e-04	ci right 1.599940e-04	k: 84	n:650000
Cons ci ratio: 2.366455e-02	ci left: 4.002511e-02	ci right 4.098514e-02	k: 26327	n:650000
KS ci ratio: 2.799576e-01	ci left: 2.593738e-04	ci right 3.451830e-04	k: 195	n:650000
COBL   650000 perm   314 sec   (2072 perm/sec)   p_kst 3.000000e-04   p_cons 4.050308e-02   p_joint 1.292308e-04

Joint ci ratio: 4.753450e-01	ci left: 7.867369e-05	ci right 1.289189e-04	k: 67	n:660000
Cons ci ratio: 2.348232e-02	ci left: 4.003622e-02	ci right 4.098903e-02	k: 26737	n:660000
KS ci ratio: 2.778393e-01	ci left: 2.596715e-04	ci right 3.448155e-04	k: 198	n:660000
COBL   660000 perm   321 sec   (2056 perm/sec)   p_kst 3.000000e-04   p_cons 4.051061e-02   p_joint 1.015152e-04

Joint ci ratio: 4.753453e-01	ci left: 7.749944e-05	ci right 1.269948e-04	k: 67	n:670000
Cons ci ratio: 2.330513e-02	ci left: 4.004406e-02	ci right 4.098977e-02	k: 27145	n:670000
KS ci ratio: 2.771443e-01	ci left: 2.571845e-04	ci right 3.412652e-04	k: 199	n:670000
COBL   670000 perm   328 sec   (2041 perm/sec)   p_kst 2.970149e-04   p_cons 4.051493e-02   p_joint 1.000000e-04

Joint ci ratio: 4.651938e-01	ci left: 8.024855e-05	ci right 1.300582e-04	k: 70	n:680000
Cons ci ratio: 2.314547e-02	ci left: 4.000636e-02	ci right 4.094462e-02	k: 27522	n:680000
KS ci ratio: 2.744135e-01	ci left: 2.588780e-04	ci right 3.425346e-04	k: 203	n:680000
COBL   680000 perm   336 sec   (2025 perm/sec)   p_kst 2.985294e-04   p_cons 4.047353e-02   p_joint 1.029412e-04

Joint ci ratio: 4.619520e-01	ci left: 8.036547e-05	ci right 1.297908e-04	k: 71	n:690000
Cons ci ratio: 2.297617e-02	ci left: 4.001302e-02	ci right 4.094447e-02	k: 27929	n:690000
KS ci ratio: 2.730784e-01	ci left: 2.578258e-04	ci right 3.406674e-04	k: 205	n:690000
COBL   690000 perm   343 sec   (2010 perm/sec)   p_kst 2.971014e-04   p_cons 4.047681e-02   p_joint 1.028986e-04

Joint ci ratio: 3.737277e-01	ci left: 1.278593e-04	ci right 1.878348e-04	k: 109	n:700000
Cons ci ratio: 2.282061e-02	ci left: 3.998540e-02	ci right 4.090983e-02	k: 28312	n:700000
KS ci ratio: 2.691857e-01	ci left: 2.621314e-04	ci right 3.449533e-04	k: 211	n:700000
COBL   700000 perm   351 sec   (1995 perm/sec)   p_kst 3.014286e-04   p_cons 4.044571e-02   p_joint 1.557143e-04

Joint ci ratio: 3.720406e-01	ci left: 1.273349e-04	ci right 1.867291e-04	k: 110	n:710000
Cons ci ratio: 2.265542e-02	ci left: 4.000202e-02	ci right 4.092005e-02	k: 28726	n:710000
KS ci ratio: 2.666815e-01	ci left: 2.636949e-04	ci right 3.461061e-04	k: 215	n:710000
COBL   710000 perm   358 sec   (1981 perm/sec)   p_kst 3.028169e-04   p_cons 4.045915e-02   p_joint 1.549296e-04

Joint ci ratio: 3.687334e-01	ci left: 1.280856e-04	ci right 1.871708e-04	k: 112	n:720000
Cons ci ratio: 2.250060e-02	ci left: 3.999471e-02	ci right 4.090622e-02	k: 29123	n:720000
KS ci ratio: 2.648486e-01	ci left: 2.639215e-04	ci right 3.457426e-04	k: 218	n:720000
COBL   720000 perm   366 sec   (1966 perm/sec)   p_kst 3.027778e-04   p_cons 4.044861e-02   p_joint 1.555556e-04

Joint ci ratio: 3.623748e-01	ci left: 1.313073e-04	ci right 1.905873e-04	k: 116	n:730000
Cons ci ratio: 2.234260e-02	ci left: 4.000942e-02	ci right 4.091478e-02	k: 29536	n:730000
KS ci ratio: 2.618757e-01	ci left: 2.667034e-04	ci right 3.483068e-04	k: 223	n:730000
COBL   730000 perm   374 sec   (1951 perm/sec)   p_kst 3.054795e-04   p_cons 4.046027e-02   p_joint 1.589041e-04

Joint ci ratio: 3.593167e-01	ci left: 1.319905e-04	ci right 1.909585e-04	k: 118	n:740000
Cons ci ratio: 2.220180e-02	ci left: 3.997537e-02	ci right 4.087418e-02	k: 29913	n:740000
KS ci ratio: 2.595682e-01	ci left: 2.681515e-04	ci right 3.493578e-04	k: 227	n:740000
COBL   740000 perm   382 sec   (1937 perm/sec)   p_kst 3.067568e-04   p_cons 4.042297e-02   p_joint 1.594595e-04

Joint ci ratio: 4.064596e-01	ci left: 9.888776e-05	ci right 1.504377e-04	k: 92	n:750000
Cons ci ratio: 2.204846e-02	ci left: 3.999529e-02	ci right 4.088826e-02	k: 30330	n:750000
KS ci ratio: 2.590012e-01	ci left: 2.658228e-04	ci right 3.461196e-04	k: 228	n:750000
COBL   750000 perm   390 sec   (1924 perm/sec)   p_kst 3.040000e-04   p_cons 4.044000e-02   p_joint 1.226667e-04

Joint ci ratio: 3.266355e-01	ci left: 1.585855e-04	ci right 2.216436e-04	k: 143	n:760000
Cons ci ratio: 2.188786e-02	ci left: 4.005136e-02	ci right 4.093899e-02	k: 30775	n:760000
KS ci ratio: 2.562188e-01	ci left: 2.684794e-04	ci right 3.485681e-04	k: 233	n:760000
COBL   760000 perm   398 sec   (1910 perm/sec)   p_kst 3.065789e-04   p_cons 4.049342e-02   p_joint 1.881579e-04

Joint ci ratio: 3.221908e-01	ci left: 1.612978e-04	ci right 2.243814e-04	k: 147	n:770000
Cons ci ratio: 2.174562e-02	ci left: 4.005302e-02	ci right 4.093485e-02	k: 31179	n:770000
KS ci ratio: 2.535242e-01	ci left: 2.710714e-04	ci right 3.509486e-04	k: 238	n:770000
COBL   770000 perm   406 sec   (1897 perm/sec)   p_kst 3.090909e-04   p_cons 4.049221e-02   p_joint 1.909091e-04

Joint ci ratio: 3.051391e-01	ci left: 1.793108e-04	ci right 2.450080e-04	k: 164	n:780000
Cons ci ratio: 2.159969e-02	ci left: 4.007762e-02	ci right 4.095400e-02	k: 31601	n:780000
KS ci ratio: 2.519479e-01	ci left: 2.711987e-04	ci right 3.505385e-04	k: 241	n:780000
COBL   780000 perm   414 sec   (1884 perm/sec)   p_kst 3.089744e-04   p_cons 4.051410e-02   p_joint 2.102564e-04

Joint ci ratio: 3.024022e-01	ci left: 1.805491e-04	ci right 2.459926e-04	k: 167	n:790000
Cons ci ratio: 2.145457e-02	ci left: 4.010917e-02	ci right 4.098027e-02	k: 32029	n:790000
KS ci ratio: 2.498910e-01	ci left: 2.725107e-04	ci right 3.514823e-04	k: 245	n:790000
COBL   790000 perm   422 sec   (1872 perm/sec)   p_kst 3.101266e-04   p_cons 4.054304e-02   p_joint 2.113924e-04

Joint ci ratio: 3.168827e-01	ci left: 1.609980e-04	ci right 2.227167e-04	k: 152	n:800000
Cons ci ratio: 2.132466e-02	ci left: 4.009519e-02	ci right 4.096065e-02	k: 32421	n:800000
KS ci ratio: 2.488815e-01	ci left: 2.714481e-04	ci right 3.497447e-04	k: 247	n:800000
COBL   800000 perm   430 sec   (1860 perm/sec)   p_kst 3.087500e-04   p_cons 4.052625e-02   p_joint 1.900000e-04

Joint ci ratio: 3.158524e-01	ci left: 1.601469e-04	ci right 2.212994e-04	k: 153	n:810000
Cons ci ratio: 2.118969e-02	ci left: 4.010858e-02	ci right 4.096878e-02	k: 32835	n:810000
KS ci ratio: 2.468982e-01	ci left: 2.727284e-04	ci right 3.506713e-04	k: 251	n:810000
COBL   810000 perm   439 sec   (1846 perm/sec)   p_kst 3.098765e-04   p_cons 4.053704e-02   p_joint 1.888889e-04

Joint ci ratio: 3.138211e-01	ci left: 1.604402e-04	ci right 2.212317e-04	k: 155	n:820000
Cons ci ratio: 2.105823e-02	ci left: 4.011803e-02	ci right 4.097303e-02	k: 33246	n:820000
KS ci ratio: 2.440100e-01	ci left: 2.762696e-04	ci right 3.541609e-04	k: 257	n:820000
COBL   820000 perm   448 sec   (1830 perm/sec)   p_kst 3.134146e-04   p_cons 4.054390e-02   p_joint 1.890244e-04

Joint ci ratio: 3.108463e-01	ci left: 1.618384e-04	ci right 2.224631e-04	k: 158	n:830000
Cons ci ratio: 2.092563e-02	ci left: 4.014045e-02	ci right 4.099048e-02	k: 33668	n:830000
KS ci ratio: 2.412208e-01	ci left: 2.797306e-04	ci right 3.575614e-04	k: 263	n:830000
COBL   830000 perm   457 sec   (1818 perm/sec)   p_kst 3.168675e-04   p_cons 4.056386e-02   p_joint 1.903614e-04

Joint ci ratio: 3.108466e-01	ci left: 1.599117e-04	ci right 2.198147e-04	k: 158	n:840000
Cons ci ratio: 2.080409e-02	ci left: 4.013037e-02	ci right 4.097519e-02	k: 34063	n:840000
KS ci ratio: 2.385251e-01	ci left: 2.831141e-04	ci right 3.608759e-04	k: 269	n:840000
COBL   840000 perm   465 sec   (1806 perm/sec)   p_kst 3.202381e-04   p_cons 4.055119e-02   p_joint 1.880952e-04

Joint ci ratio: 3.098739e-01	ci left: 1.591152e-04	ci right 2.184965e-04	k: 159	n:850000
Cons ci ratio: 2.067713e-02	ci left: 4.014863e-02	ci right 4.098862e-02	k: 34482	n:850000
KS ci ratio: 2.367775e-01	ci left: 2.842091e-04	ci right 3.616159e-04	k: 273	n:850000
COBL   850000 perm   474 sec   (1792 perm/sec)   p_kst 3.211765e-04   p_cons 4.056706e-02   p_joint 1.870588e-04

Joint ci ratio: 3.070088e-01	ci left: 1.604835e-04	ci right 2.197133e-04	k: 162	n:860000
Cons ci ratio: 2.054696e-02	ci left: 4.018732e-02	ci right 4.102276e-02	k: 34919	n:860000
KS ci ratio: 2.346461e-01	ci left: 2.863750e-04	ci right 3.635676e-04	k: 278	n:860000
COBL   860000 perm   484 sec   (1779 perm/sec)   p_kst 3.232558e-04   p_cons 4.060349e-02   p_joint 1.883721e-04

Joint ci ratio: 3.060715e-01	ci left: 1.596999e-04	ci right 2.184255e-04	k: 163	n:870000
Cons ci ratio: 2.042192e-02	ci left: 4.021483e-02	ci right 4.104570e-02	k: 35347	n:870000
KS ci ratio: 2.325711e-01	ci left: 2.884941e-04	ci right 3.654715e-04	k: 283	n:870000
COBL   870000 perm   493 sec   (1765 perm/sec)   p_kst 3.252874e-04   p_cons 4.062874e-02   p_joint 1.873563e-04

Joint ci ratio: 3.060719e-01	ci left: 1.578851e-04	ci right 2.159434e-04	k: 163	n:880000
Cons ci ratio: 2.031127e-02	ci left: 4.019538e-02	ci right 4.102129e-02	k: 35734	n:880000
KS ci ratio: 2.317567e-01	ci left: 2.873563e-04	ci right 3.637231e-04	k: 285	n:880000
COBL   880000 perm   502 sec   (1752 perm/sec)   p_kst 3.238636e-04   p_cons 4.060682e-02   p_joint 1.852273e-04

Joint ci ratio: 2.473932e-01	ci left: 2.471591e-04	ci right 3.179578e-04	k: 250	n:890000
Cons ci ratio: 2.019395e-02	ci left: 4.020879e-02	ci right 4.103015e-02	k: 36150	n:890000
KS ci ratio: 2.301527e-01	ci left: 2.883620e-04	ci right 3.643903e-04	k: 289	n:890000
COBL   890000 perm   511 sec   (1741 perm/sec)   p_kst 3.247191e-04   p_cons 4.061798e-02   p_joint 2.808989e-04

Joint ci ratio: 4.899823e-01	ci left: 5.379033e-05	ci right 8.955953e-05	k: 63	n:900000
Cons ci ratio: 2.101030e-02	ci left: 3.684643e-02	ci right 3.762989e-02	k: 33513	n:900000
KS ci ratio: 2.289714e-01	ci left: 2.882996e-04	ci right 3.638662e-04	k: 292	n:900000
COBL   900000 perm   520 sec   (1730 perm/sec)   p_kst 3.244444e-04   p_cons 3.723667e-02   p_joint 7.000000e-05

Joint ci ratio: 5.147045e-01	ci left: 4.744126e-05	ci right 8.115322e-05	k: 57	n:910000
Cons ci ratio: 2.088538e-02	ci left: 3.687988e-02	ci right 3.765934e-02	k: 33914	n:910000
KS ci ratio: 2.281941e-01	ci left: 2.872034e-04	ci right 3.621912e-04	k: 294	n:910000
COBL   910000 perm   531 sec   (1714 perm/sec)   p_kst 3.230769e-04   p_cons 3.726813e-02   p_joint 6.263736e-05

Joint ci ratio: 5.147047e-01	ci left: 4.692559e-05	ci right 8.027113e-05	k: 57	n:920000
Cons ci ratio: 2.076832e-02	ci left: 3.689315e-02	ci right 3.766846e-02	k: 34297	n:920000
KS ci ratio: 2.278086e-01	ci left: 2.851065e-04	ci right 3.594033e-04	k: 295	n:920000
COBL   920000 perm   540 sec   (1703 perm/sec)   p_kst 3.206522e-04   p_cons 3.727935e-02   p_joint 6.195652e-05

Joint ci ratio: 5.147049e-01	ci left: 4.642101e-05	ci right 7.940800e-05	k: 57	n:930000
Cons ci ratio: 2.065104e-02	ci left: 3.691363e-02	ci right 3.768495e-02	k: 34687	n:930000
KS ci ratio: 2.259084e-01	ci left: 2.871117e-04	ci right 3.612200e-04	k: 300	n:930000
COBL   930000 perm   550 sec   (1691 perm/sec)   p_kst 3.225806e-04   p_cons 3.729785e-02   p_joint 6.129032e-05

Joint ci ratio: 5.018880e-01	ci left: 4.870919e-05	ci right 8.216084e-05	k: 60	n:940000
Cons ci ratio: 2.054577e-02	ci left: 3.689876e-02	ci right 3.766579e-02	k: 35044	n:940000
KS ci ratio: 2.247909e-01	ci left: 2.870686e-04	ci right 3.607486e-04	k: 303	n:940000
COBL   940000 perm   559 sec   (1681 perm/sec)   p_kst 3.223404e-04   p_cons 3.728085e-02   p_joint 6.382979e-05

Joint ci ratio: 4.978240e-01	ci left: 4.911631e-05	ci right 8.248035e-05	k: 61	n:950000
Cons ci ratio: 2.044119e-02	ci left: 3.688736e-02	ci right 3.765020e-02	k: 35404	n:950000
KS ci ratio: 2.229646e-01	ci left: 2.890149e-04	ci right 3.625090e-04	k: 308	n:950000
COBL   950000 perm   569 sec   (1670 perm/sec)   p_kst 3.242105e-04   p_cons 3.726737e-02   p_joint 6.421053e-05

Joint ci ratio: 4.938571e-01	ci left: 4.951602e-05	ci right 8.279216e-05	k: 62	n:960000
Cons ci ratio: 2.034026e-02	ci left: 3.686895e-02	ci right 3.762760e-02	k: 35757	n:960000
KS ci ratio: 2.222467e-01	ci left: 2.879715e-04	ci right 3.609322e-04	k: 310	n:960000
COBL   960000 perm   579 sec   (1659 perm/sec)   p_kst 3.229167e-04   p_cons 3.724687e-02   p_joint 6.458333e-05

Joint ci ratio: 4.938573e-01	ci left: 4.900554e-05	ci right 8.193865e-05	k: 62	n:970000
Cons ci ratio: 2.023092e-02	ci left: 3.688580e-02	ci right 3.764067e-02	k: 36144	n:970000
KS ci ratio: 2.222471e-01	ci left: 2.850027e-04	ci right 3.572114e-04	k: 310	n:970000
COBL   970000 perm   588 sec   (1649 perm/sec)   p_kst 3.195876e-04   p_cons 3.726186e-02   p_joint 6.391753e-05

Joint ci ratio: 4.861998e-01	ci left: 5.029402e-05	ci right 8.339371e-05	k: 64	n:980000
Cons ci ratio: 2.011589e-02	ci left: 3.692873e-02	ci right 3.768013e-02	k: 36557	n:980000
KS ci ratio: 2.211828e-01	ci left: 2.849857e-04	ci right 3.567973e-04	k: 313	n:980000
COBL   980000 perm   598 sec   (1639 perm/sec)   p_kst 3.193878e-04   p_cons 3.730306e-02   p_joint 6.530612e-05

Joint ci ratio: 4.862000e-01	ci left: 4.978600e-05	ci right 8.255135e-05	k: 64	n:990000
Cons ci ratio: 2.001320e-02	ci left: 3.693360e-02	ci right 3.768123e-02	k: 36933	n:990000
KS ci ratio: 2.197873e-01	ci left: 2.859244e-04	ci right 3.574564e-04	k: 317	n:990000
COBL   990000 perm   608 sec   (1629 perm/sec)   p_kst 3.202020e-04   p_cons 3.730606e-02   p_joint 6.464646e-05

Joint ci ratio: 4.862001e-01	ci left: 4.928814e-05	ci right 8.172585e-05	k: 64	n:1000000
Cons ci ratio: 1.990958e-02	ci left: 3.694735e-02	ci right 3.769133e-02	k: 37318	n:1000000
KS ci ratio: 2.180793e-01	ci left: 2.877910e-04	ci right 3.591556e-04	k: 322	n:1000000
COBL   1000000 perm   617 sec   (1620 perm/sec)   p_kst 3.220000e-04   p_cons 3.731800e-02   p_joint 6.400000e-05

Joint ci ratio: 4.862003e-01	ci left: 4.880013e-05	ci right 8.091669e-05	k: 64	n:1010000
Cons ci ratio: 1.980782e-02	ci left: 3.695985e-02	ci right 3.770024e-02	k: 37702	n:1010000
KS ci ratio: 2.177427e-01	ci left: 2.858776e-04	ci right 3.566437e-04	k: 323	n:1010000
COBL   1010000 perm   627 sec   (1610 perm/sec)   p_kst 3.198020e-04   p_cons 3.732871e-02   p_joint 6.336634e-05

Joint ci ratio: 4.825028e-01	ci left: 4.918232e-05	ci right 8.122266e-05	k: 65	n:1020000
Cons ci ratio: 1.970895e-02	ci left: 3.696723e-02	ci right 3.770403e-02	k: 38081	n:1020000
KS ci ratio: 2.167416e-01	ci left: 2.858560e-04	ci right 3.562481e-04	k: 326	n:1020000
COBL   1020000 perm   637 sec   (1601 perm/sec)   p_kst 3.196078e-04   p_cons 3.733431e-02   p_joint 6.372549e-05

Joint ci ratio: 2.851117e-01	ci left: 1.573666e-04	ci right 2.105595e-04	k: 188	n:1030000
Cons ci ratio: 1.961234e-02	ci left: 3.697158e-02	ci right 3.770481e-02	k: 38457	n:1030000
KS ci ratio: 2.154280e-01	ci left: 2.867541e-04	ci right 3.568827e-04	k: 330	n:1030000
COBL   1030000 perm   648 sec   (1590 perm/sec)   p_kst 3.203883e-04   p_cons 3.733689e-02   p_joint 1.825243e-04

Joint ci ratio: 2.843606e-01	ci left: 1.567463e-04	ci right 2.095649e-04	k: 189	n:1040000
Cons ci ratio: 1.951479e-02	ci left: 3.698447e-02	ci right 3.771427e-02	k: 38842	n:1040000
KS ci ratio: 2.147802e-01	ci left: 2.858163e-04	ci right 3.554777e-04	k: 332	n:1040000
COBL   1040000 perm   658 sec   (1580 perm/sec)   p_kst 3.192308e-04   p_cons 3.734808e-02   p_joint 1.817308e-04

Joint ci ratio: 2.828756e-01	ci left: 1.570228e-04	ci right 2.096090e-04	k: 191	n:1050000
Cons ci ratio: 1.942537e-02	ci left: 3.697247e-02	ci right 3.769865e-02	k: 39201	n:1050000
KS ci ratio: 2.135016e-01	ci left: 2.866995e-04	ci right 3.561057e-04	k: 336	n:1050000
COBL   1050000 perm   669 sec   (1570 perm/sec)   p_kst 3.200000e-04   p_cons 3.733429e-02   p_joint 1.819048e-04

Joint ci ratio: 2.821420e-01	ci left: 1.564180e-04	ci right 2.086416e-04	k: 192	n:1060000
Cons ci ratio: 1.848942e-02	ci left: 4.030396e-02	ci right 4.105704e-02	k: 43120	n:1060000
KS ci ratio: 2.128710e-01	ci left: 2.857808e-04	ci right 3.547336e-04	k: 338	n:1060000
COBL   1060000 perm   679 sec   (1560 perm/sec)   p_kst 3.188679e-04   p_cons 4.067925e-02   p_joint 1.811321e-04

Joint ci ratio: 2.293692e-01	ci left: 2.416134e-04	ci right 3.050685e-04	k: 291	n:1070000
Cons ci ratio: 1.840321e-02	ci left: 4.030405e-02	ci right 4.105358e-02	k: 43525	n:1070000
KS ci ratio: 2.113182e-01	ci left: 2.875347e-04	ci right 3.563390e-04	k: 343	n:1070000
COBL   1070000 perm   690 sec   (1551 perm/sec)   p_kst 3.205607e-04   p_cons 4.067757e-02   p_joint 2.719626e-04

Joint ci ratio: 2.293695e-01	ci left: 2.393762e-04	ci right 3.022439e-04	k: 291	n:1080000
Cons ci ratio: 1.831929e-02	ci left: 4.029953e-02	ci right 4.104553e-02	k: 43925	n:1080000
KS ci ratio: 2.110119e-01	ci left: 2.857493e-04	ci right 3.540145e-04	k: 344	n:1080000
COBL   1080000 perm   700 sec   (1542 perm/sec)   p_kst 3.185185e-04   p_cons 4.067130e-02   p_joint 2.694444e-04

Joint ci ratio: 2.278143e-01	ci left: 2.406397e-04	ci right 3.033505e-04	k: 295	n:1090000
Cons ci ratio: 1.823779e-02	ci left: 4.028963e-02	ci right 4.103208e-02	k: 44319	n:1090000
KS ci ratio: 2.094991e-01	ci left: 2.874734e-04	ci right 3.555949e-04	k: 349	n:1090000
COBL   1090000 perm   711 sec   (1533 perm/sec)   p_kst 3.201835e-04   p_cons 4.065963e-02   p_joint 2.706422e-04

Joint ci ratio: 2.274307e-01	ci left: 2.393093e-04	ci right 3.015536e-04	k: 296	n:1100000
Cons ci ratio: 1.815483e-02	ci left: 4.029077e-02	ci right 4.102983e-02	k: 44725	n:1100000
KS ci ratio: 2.092006e-01	ci left: 2.857214e-04	ci right 3.533190e-04	k: 350	n:1100000
COBL   1100000 perm   722 sec   (1524 perm/sec)   p_kst 3.181818e-04   p_cons 4.065909e-02   p_joint 2.690909e-04

Joint ci ratio: 2.266688e-01	ci left: 2.388527e-04	ci right 3.007410e-04	k: 298	n:1110000
Cons ci ratio: 1.806715e-02	ci left: 4.031701e-02	ci right 4.105295e-02	k: 45159	n:1110000
KS ci ratio: 2.080186e-01	ci left: 2.865627e-04	ci right 3.539275e-04	k: 354	n:1110000
COBL   1110000 perm   732 sec   (1515 perm/sec)   p_kst 3.189189e-04   p_cons 4.068378e-02   p_joint 2.684685e-04

Joint ci ratio: 2.255401e-01	ci left: 2.392469e-04	ci right 3.008859e-04	k: 301	n:1120000
Cons ci ratio: 1.798504e-02	ci left: 4.032413e-02	ci right 4.105682e-02	k: 45572	n:1120000
KS ci ratio: 2.068564e-01	ci left: 2.873900e-04	ci right 3.545241e-04	k: 358	n:1120000
COBL   1120000 perm   743 sec   (1507 perm/sec)   p_kst 3.196429e-04   p_cons 4.068929e-02   p_joint 2.687500e-04

Joint ci ratio: 2.251678e-01	ci left: 2.379647e-04	ci right 2.991580e-04	k: 302	n:1130000
Cons ci ratio: 1.790730e-02	ci left: 4.031703e-02	ci right 4.104639e-02	k: 45969	n:1130000
KS ci ratio: 2.062827e-01	ci left: 2.865251e-04	ci right 3.532481e-04	k: 360	n:1130000
COBL   1130000 perm   754 sec   (1499 perm/sec)   p_kst 3.185841e-04   p_cons 4.068053e-02   p_joint 2.672566e-04

Joint ci ratio: 2.247973e-01	ci left: 2.367050e-04	ci right 2.974604e-04	k: 303	n:1140000
Cons ci ratio: 1.783155e-02	ci left: 4.030569e-02	ci right 4.103173e-02	k: 46361	n:1140000
KS ci ratio: 2.054309e-01	ci left: 2.865077e-04	ci right 3.529164e-04	k: 363	n:1140000
COBL   1140000 perm   766 sec   (1489 perm/sec)   p_kst 3.184211e-04   p_cons 4.066754e-02   p_joint 2.657895e-04

Joint ci ratio: 2.233327e-01	ci left: 2.379298e-04	ci right 2.985469e-04	k: 307	n:1150000
Cons ci ratio: 1.775261e-02	ci left: 4.031274e-02	ci right 4.103566e-02	k: 46774	n:1150000
KS ci ratio: 2.045896e-01	ci left: 2.864911e-04	ci right 3.525900e-04	k: 366	n:1150000
COBL   1150000 perm   777 sec   (1480 perm/sec)   p_kst 3.182609e-04   p_cons 4.067304e-02   p_joint 2.669565e-04

Joint ci ratio: 2.338192e-01	ci left: 2.139345e-04	ci right 2.713680e-04	k: 280	n:1160000
Cons ci ratio: 1.767880e-02	ci left: 4.030165e-02	ci right 4.102134e-02	k: 47166	n:1160000
KS ci ratio: 2.043116e-01	ci left: 2.848392e-04	ci right 3.504566e-04	k: 367	n:1160000
COBL   1160000 perm   788 sec   (1472 perm/sec)   p_kst 3.163793e-04   p_cons 4.066034e-02   p_joint 2.413793e-04

Joint ci ratio: 2.321724e-01	ci left: 2.153253e-04	ci right 2.726666e-04	k: 284	n:1170000
Cons ci ratio: 1.760263e-02	ci left: 4.030522e-02	ci right 4.102184e-02	k: 47575	n:1170000
KS ci ratio: 2.026659e-01	ci left: 2.872717e-04	ci right 3.528504e-04	k: 373	n:1170000
COBL   1170000 perm   800 sec   (1463 perm/sec)   p_kst 3.188034e-04   p_cons 4.066239e-02   p_joint 2.427350e-04

Joint ci ratio: 2.478962e-01	ci left: 1.856210e-04	ci right 2.389168e-04	k: 249	n:1180000
Cons ci ratio: 1.752705e-02	ci left: 4.031043e-02	ci right 4.102403e-02	k: 47986	n:1180000
KS ci ratio: 2.013245e-01	ci left: 2.888602e-04	ci right 3.543114e-04	k: 378	n:1180000
COBL   1180000 perm   811 sec   (1455 perm/sec)   p_kst 3.203390e-04   p_cons 4.066610e-02   p_joint 2.110169e-04

Joint ci ratio: 2.474020e-01	ci left: 1.848493e-04	ci right 2.378015e-04	k: 250	n:1190000
Cons ci ratio: 1.745770e-02	ci left: 4.029212e-02	ci right 4.100255e-02	k: 48369	n:1190000
KS ci ratio: 2.002703e-01	ci left: 2.896251e-04	ci right 3.548641e-04	k: 382	n:1190000
COBL   1190000 perm   823 sec   (1446 perm/sec)   p_kst 3.210084e-04   p_cons 4.064622e-02   p_joint 2.100840e-04

Joint ci ratio: 2.459365e-01	ci left: 1.856544e-04	ci right 2.384740e-04	k: 253	n:1200000
Cons ci ratio: 1.738267e-02	ci left: 4.030317e-02	ci right 4.101071e-02	k: 48787	n:1200000
KS ci ratio: 1.989756e-01	ci left: 2.911700e-04	ci right 3.562815e-04	k: 387	n:1200000
COBL   1200000 perm   835 sec   (1437 perm/sec)   p_kst 3.225000e-04   p_cons 4.065583e-02   p_joint 2.108333e-04

Joint ci ratio: 2.954595e-01	ci left: 1.239945e-04	ci right 1.677135e-04	k: 175	n:1210000
Cons ci ratio: 1.730896e-02	ci left: 4.031240e-02	ci right 4.101707e-02	k: 49203	n:1210000
KS ci ratio: 1.984648e-01	ci left: 2.903343e-04	ci right 3.550721e-04	k: 389	n:1210000
COBL   1210000 perm   847 sec   (1429 perm/sec)   p_kst 3.214876e-04   p_cons 4.066364e-02   p_joint 1.446281e-04

Joint ci ratio: 2.954597e-01	ci left: 1.229781e-04	ci right 1.663388e-04	k: 175	n:1220000
Cons ci ratio: 1.723636e-02	ci left: 4.032067e-02	ci right 4.102250e-02	k: 49618	n:1220000
KS ci ratio: 1.982111e-01	ci left: 2.887334e-04	ci right 3.530220e-04	k: 390	n:1220000
COBL   1220000 perm   858 sec   (1421 perm/sec)   p_kst 3.196721e-04   p_cons 4.067049e-02   p_joint 1.434426e-04

Joint ci ratio: 2.937950e-01	ci left: 1.234842e-04	ci right 1.667323e-04	k: 177	n:1230000
Cons ci ratio: 1.716199e-02	ci left: 4.034095e-02	ci right 4.104007e-02	k: 50048	n:1230000
KS ci ratio: 1.974550e-01	ci left: 2.887042e-04	ci right 3.527116e-04	k: 393	n:1230000
COBL   1230000 perm   871 sec   (1413 perm/sec)   p_kst 3.195122e-04   p_cons 4.068943e-02   p_joint 1.439024e-04

Joint ci ratio: 2.929733e-01	ci left: 1.232354e-04	ci right 1.662533e-04	k: 178	n:1240000
Cons ci ratio: 1.709351e-02	ci left: 4.033843e-02	ci right 4.103469e-02	k: 50450	n:1240000
KS ci ratio: 1.972051e-01	ci left: 2.871426e-04	ci right 3.507134e-04	k: 394	n:1240000
COBL   1240000 perm   883 sec   (1405 perm/sec)   p_kst 3.177419e-04   p_cons 4.068548e-02   p_joint 1.435484e-04

Joint ci ratio: 2.921584e-01	ci left: 1.229909e-04	ci right 1.657818e-04	k: 179	n:1250000
Cons ci ratio: 1.701957e-02	ci left: 4.036463e-02	ci right 4.105830e-02	k: 50888	n:1250000
KS ci ratio: 1.967078e-01	ci left: 2.863665e-04	ci right 3.495866e-04	k: 396	n:1250000
COBL   1250000 perm   895 sec   (1397 perm/sec)   p_kst 3.168000e-04   p_cons 4.071040e-02   p_joint 1.432000e-04

Joint ci ratio: 2.921586e-01	ci left: 1.220147e-04	ci right 1.644661e-04	k: 179	n:1260000
Cons ci ratio: 1.695278e-02	ci left: 4.036197e-02	ci right 4.105284e-02	k: 51290	n:1260000
KS ci ratio: 1.962143e-01	ci left: 2.856030e-04	ci right 3.484774e-04	k: 398	n:1260000
COBL   1260000 perm   908 sec   (1388 perm/sec)   p_kst 3.158730e-04   p_cons 4.070635e-02   p_joint 1.420635e-04

Joint ci ratio: 2.905488e-01	ci left: 1.225137e-04	ci right 1.648607e-04	k: 181	n:1270000
Cons ci ratio: 1.688813e-02	ci left: 4.035308e-02	ci right 4.104114e-02	k: 51684	n:1270000
KS ci ratio: 1.949962e-01	ci left: 2.870984e-04	ci right 3.498630e-04	k: 403	n:1270000
COBL   1270000 perm   920 sec   (1381 perm/sec)   p_kst 3.173228e-04   p_cons 4.069606e-02   p_joint 1.425197e-04

Joint ci ratio: 2.889653e-01	ci left: 1.230055e-04	ci right 1.652484e-04	k: 183	n:1280000
Cons ci ratio: 1.682186e-02	ci left: 4.035523e-02	ci right 4.104060e-02	k: 52092	n:1280000
KS ci ratio: 1.940379e-01	ci left: 2.878282e-04	ci right 3.504067e-04	k: 407	n:1280000
COBL   1280000 perm   932 sec   (1374 perm/sec)   p_kst 3.179688e-04   p_cons 4.069688e-02   p_joint 1.429688e-04

Joint ci ratio: 2.866379e-01	ci left: 1.242097e-04	ci right 1.664604e-04	k: 186	n:1290000
Cons ci ratio: 1.675936e-02	ci left: 4.034345e-02	ci right 4.102605e-02	k: 52482	n:1290000
KS ci ratio: 1.928596e-01	ci left: 2.892853e-04	ci right 3.517538e-04	k: 412	n:1290000
COBL   1290000 perm   944 sec   (1366 perm/sec)   p_kst 3.193798e-04   p_cons 4.068372e-02   p_joint 1.441860e-04

Joint ci ratio: 2.851172e-01	ci left: 1.246825e-04	ci right 1.668284e-04	k: 188	n:1300000
Cons ci ratio: 1.669853e-02	ci left: 4.032726e-02	ci right 4.100709e-02	k: 52866	n:1300000
KS ci ratio: 1.917026e-01	ci left: 2.907210e-04	ci right 3.530790e-04	k: 417	n:1300000
COBL   1300000 perm   957 sec   (1359 perm/sec)   p_kst 3.207692e-04   p_cons 4.066615e-02   p_joint 1.446154e-04

Joint ci ratio: 2.851174e-01	ci left: 1.237307e-04	ci right 1.655549e-04	k: 188	n:1310000
Cons ci ratio: 1.663495e-02	ci left: 4.032729e-02	ci right 4.100451e-02	k: 53271	n:1310000
KS ci ratio: 1.910183e-01	ci left: 2.906822e-04	ci right 3.527834e-04	k: 420	n:1310000
COBL   1310000 perm   969 sec   (1352 perm/sec)   p_kst 3.206107e-04   p_cons 4.066489e-02   p_joint 1.435115e-04

Joint ci ratio: 2.836206e-01	ci left: 1.242004e-04	ci right 1.659236e-04	k: 190	n:1320000
Cons ci ratio: 1.657353e-02	ci left: 4.032054e-02	ci right 4.099512e-02	k: 53667	n:1320000
KS ci ratio: 1.894496e-01	ci left: 2.935305e-04	ci right 3.556660e-04	k: 427	n:1320000
COBL   1320000 perm   982 sec   (1344 perm/sec)   p_kst 3.234848e-04   p_cons 4.065682e-02   p_joint 1.439394e-04

Joint ci ratio: 2.828811e-01	ci left: 1.239651e-04	ci right 1.654812e-04	k: 191	n:1330000
Cons ci ratio: 1.651168e-02	ci left: 4.031913e-02	ci right 4.099114e-02	k: 54070	n:1330000
KS ci ratio: 1.885704e-01	ci left: 2.941888e-04	ci right 3.561415e-04	k: 431	n:1330000
COBL   1330000 perm   994 sec   (1337 perm/sec)   p_kst 3.240602e-04   p_cons 4.065414e-02   p_joint 1.436090e-04

Joint ci ratio: 2.806965e-01	ci left: 1.251206e-04	ci right 1.666429e-04	k: 194	n:1340000
Cons ci ratio: 1.645130e-02	ci left: 4.031403e-02	ci right 4.098348e-02	k: 54468	n:1340000
KS ci ratio: 1.872742e-01	ci left: 2.962603e-04	ci right 3.581717e-04	k: 437	n:1340000
COBL   1340000 perm   1007 sec   (1330 perm/sec)   p_kst 3.261194e-04   p_cons 4.064776e-02   p_joint 1.447761e-04

Joint ci ratio: 2.792680e-01	ci left: 1.255712e-04	ci right 1.669937e-04	k: 196	n:1350000
Cons ci ratio: 1.639033e-02	ci left: 4.031491e-02	ci right 4.098187e-02	k: 54874	n:1350000
KS ci ratio: 1.864248e-01	ci left: 2.968902e-04	ci right 3.586200e-04	k: 441	n:1350000
COBL   1350000 perm   1020 sec   (1324 perm/sec)   p_kst 3.266667e-04   p_cons 4.064741e-02   p_joint 1.451852e-04

Joint ci ratio: 2.792681e-01	ci left: 1.246479e-04	ci right 1.657658e-04	k: 196	n:1360000
Cons ci ratio: 1.633034e-02	ci left: 4.031432e-02	ci right 4.097881e-02	k: 55278	n:1360000
KS ci ratio: 1.860045e-01	ci left: 2.961092e-04	ci right 3.575221e-04	k: 443	n:1360000
COBL   1360000 perm   1033 sec   (1317 perm/sec)   p_kst 3.257353e-04   p_cons 4.064559e-02   p_joint 1.441176e-04

Joint ci ratio: 2.785620e-01	ci left: 1.244170e-04	ci right 1.653367e-04	k: 197	n:1370000
Cons ci ratio: 1.627101e-02	ci left: 4.031375e-02	ci right 4.097579e-02	k: 55682	n:1370000
KS ci ratio: 1.855871e-01	ci left: 2.953398e-04	ci right 3.564402e-04	k: 445	n:1370000
COBL   1370000 perm   1045 sec   (1311 perm/sec)   p_kst 3.248175e-04   p_cons 4.064380e-02   p_joint 1.437956e-04

Joint ci ratio: 3.158649e-01	ci left: 9.399871e-05	ci right 1.298940e-04	k: 153	n:1380000
Cons ci ratio: 1.621292e-02	ci left: 4.031030e-02	ci right 4.096989e-02	k: 56082	n:1380000
KS ci ratio: 1.847604e-01	ci left: 2.959638e-04	ci right 3.568900e-04	k: 449	n:1380000
COBL   1380000 perm   1058 sec   (1304 perm/sec)   p_kst 3.253623e-04   p_cons 4.063913e-02   p_joint 1.108696e-04

Joint ci ratio: 3.138335e-01	ci left: 9.464764e-05	ci right 1.305116e-04	k: 155	n:1390000
Cons ci ratio: 1.615425e-02	ci left: 4.031263e-02	ci right 4.096986e-02	k: 56490	n:1390000
KS ci ratio: 1.835406e-01	ci left: 2.979522e-04	ci right 3.588378e-04	k: 455	n:1390000
COBL   1390000 perm   1071 sec   (1298 perm/sec)   p_kst 3.273381e-04   p_cons 4.064029e-02   p_joint 1.115108e-04

Joint ci ratio: 3.138336e-01	ci left: 9.397158e-05	ci right 1.295794e-04	k: 155	n:1400000
Cons ci ratio: 1.609357e-02	ci left: 4.032775e-02	ci right 4.098273e-02	k: 56916	n:1400000
KS ci ratio: 1.827408e-01	ci left: 2.985501e-04	ci right 3.592626e-04	k: 459	n:1400000
COBL   1400000 perm   1085 sec   (1291 perm/sec)   p_kst 3.278571e-04   p_cons 4.065429e-02   p_joint 1.107143e-04

Joint ci ratio: 3.128325e-01	ci left: 9.395857e-05	ci right 1.294252e-04	k: 156	n:1410000
Cons ci ratio: 1.603516e-02	ci left: 4.033488e-02	ci right 4.098758e-02	k: 57331	n:1410000
KS ci ratio: 1.815604e-01	ci left: 3.004941e-04	ci right 3.611637e-04	k: 465	n:1410000
COBL   1410000 perm   1098 sec   (1284 perm/sec)   p_kst 3.297872e-04   p_cons 4.066028e-02   p_joint 1.106383e-04

Joint ci ratio: 3.118410e-01	ci left: 9.394592e-05	ci right 1.292730e-04	k: 157	n:1420000
Cons ci ratio: 1.597595e-02	ci left: 4.034893e-02	ci right 4.099942e-02	k: 57756	n:1420000
KS ci ratio: 1.809788e-01	ci left: 3.003947e-04	ci right 3.608288e-04	k: 468	n:1420000
COBL   1420000 perm   1112 sec   (1277 perm/sec)   p_kst 3.295775e-04   p_cons 4.067324e-02   p_joint 1.105634e-04

Joint ci ratio: 3.108588e-01	ci left: 9.393363e-05	ci right 1.291228e-04	k: 158	n:1430000
Cons ci ratio: 1.591625e-02	ci left: 4.036836e-02	ci right 4.101672e-02	k: 58189	n:1430000
KS ci ratio: 1.805943e-01	ci left: 2.996294e-04	ci right 3.597673e-04	k: 470	n:1430000
COBL   1430000 perm   1125 sec   (1272 perm/sec)   p_kst 3.286713e-04   p_cons 4.069161e-02   p_joint 1.104895e-04

Joint ci ratio: 3.098859e-01	ci left: 9.392167e-05	ci right 1.289745e-04	k: 159	n:1440000
Cons ci ratio: 1.586469e-02	ci left: 4.035086e-02	ci right 4.099682e-02	k: 58569	n:1440000
KS ci ratio: 1.798322e-01	ci left: 3.002011e-04	ci right 3.601719e-04	k: 474	n:1440000
COBL   1440000 perm   1138 sec   (1265 perm/sec)   p_kst 3.291667e-04   p_cons 4.067292e-02   p_joint 1.104167e-04

Joint ci ratio: 3.089220e-01	ci left: 9.391005e-05	ci right 1.288280e-04	k: 160	n:1450000
Cons ci ratio: 1.581334e-02	ci left: 4.033499e-02	ci right 4.097858e-02	k: 58951	n:1450000
KS ci ratio: 1.790797e-01	ci left: 3.007655e-04	ci right 3.605703e-04	k: 478	n:1450000
COBL   1450000 perm   1152 sec   (1259 perm/sec)   p_kst 3.296552e-04   p_cons 4.065586e-02   p_joint 1.103448e-04

Joint ci ratio: 3.070209e-01	ci left: 9.453085e-05	ci right 1.294210e-04	k: 162	n:1460000
Cons ci ratio: 1.576014e-02	ci left: 4.033093e-02	ci right 4.097227e-02	k: 59350	n:1460000
KS ci ratio: 1.787071e-01	ci left: 3.000139e-04	ci right 3.595318e-04	k: 480	n:1460000
COBL   1460000 perm   1166 sec   (1252 perm/sec)   p_kst 3.287671e-04   p_cons 4.065068e-02   p_joint 1.109589e-04

Joint ci ratio: 3.060834e-01	ci left: 9.451574e-05	ci right 1.292730e-04	k: 163	n:1470000
Cons ci ratio: 1.570802e-02	ci left: 4.032422e-02	ci right 4.096331e-02	k: 59745	n:1470000
KS ci ratio: 1.781524e-01	ci left: 2.999227e-04	ci right 3.592179e-04	k: 483	n:1470000
COBL   1470000 perm   1180 sec   (1246 perm/sec)   p_kst 3.285714e-04   p_cons 4.064286e-02   p_joint 1.108844e-04

Joint ci ratio: 3.024173e-01	ci left: 9.637354e-05	ci right 1.313079e-04	k: 167	n:1480000
Cons ci ratio: 1.565764e-02	ci left: 4.031154e-02	ci right 4.094837e-02	k: 60131	n:1480000
KS ci ratio: 1.774207e-01	ci left: 3.004786e-04	ci right 3.596136e-04	k: 487	n:1480000
COBL   1480000 perm   1194 sec   (1239 perm/sec)   p_kst 3.290541e-04   p_cons 4.062905e-02   p_joint 1.128378e-04

Joint ci ratio: 3.024174e-01	ci left: 9.572674e-05	ci right 1.304267e-04	k: 167	n:1490000
Cons ci ratio: 1.560182e-02	ci left: 4.032846e-02	ci right 4.096326e-02	k: 60561	n:1490000
KS ci ratio: 1.770584e-01	ci left: 2.997447e-04	ci right 3.586019e-04	k: 489	n:1490000
COBL   1490000 perm   1208 sec   (1233 perm/sec)   p_kst 3.281879e-04   p_cons 4.064497e-02   p_joint 1.120805e-04

Joint ci ratio: 3.006331e-01	ci left: 9.632104e-05	ci right 1.309911e-04	k: 169	n:1500000
Cons ci ratio: 1.554873e-02	ci left: 4.033453e-02	ci right 4.096725e-02	k: 60975	n:1500000
KS ci ratio: 1.758068e-01	ci left: 3.022070e-04	ci right 3.610837e-04	k: 496	n:1500000
COBL   1500000 perm   1223 sec   (1227 perm/sec)   p_kst 3.306667e-04   p_cons 4.065000e-02   p_joint 1.126667e-04

Joint ci ratio: 2.988801e-01	ci left: 9.690807e-05	ci right 1.315474e-04	k: 171	n:1510000
Cons ci ratio: 1.549525e-02	ci left: 4.034514e-02	ci right 4.097583e-02	k: 61396	n:1510000
KS ci ratio: 1.752786e-01	ci left: 3.021051e-04	ci right 3.607664e-04	k: 499	n:1510000
COBL   1510000 perm   1237 sec   (1221 perm/sec)   p_kst 3.304636e-04   p_cons 4.065960e-02   p_joint 1.132450e-04

Joint ci ratio: 2.980150e-01	ci left: 9.687916e-05	ci right 1.313889e-04	k: 172	n:1520000
Cons ci ratio: 1.544336e-02	ci left: 4.035037e-02	ci right 4.097901e-02	k: 61809	n:1520000
KS ci ratio: 1.742362e-01	ci left: 3.038923e-04	ci right 3.625127e-04	k: 505	n:1520000
COBL   1520000 perm   1251 sec   (1215 perm/sec)   p_kst 3.322368e-04   p_cons 4.066382e-02   p_joint 1.131579e-04

Joint ci ratio: 2.963071e-01	ci left: 9.745572e-05	ci right 1.319345e-04	k: 174	n:1530000
Cons ci ratio: 1.539315e-02	ci left: 4.034968e-02	ci right 4.097624e-02	k: 62213	n:1530000
KS ci ratio: 1.735515e-01	ci left: 3.044067e-04	ci right 3.628714e-04	k: 509	n:1530000
COBL   1530000 perm   1265 sec   (1209 perm/sec)   p_kst 3.326797e-04   p_cons 4.066209e-02   p_joint 1.137255e-04

Joint ci ratio: 2.963072e-01	ci left: 9.682288e-05	ci right 1.310778e-04	k: 174	n:1540000
Cons ci ratio: 1.534432e-02	ci left: 4.034447e-02	ci right 4.096895e-02	k: 62610	n:1540000
KS ci ratio: 1.727069e-01	ci left: 3.055361e-04	ci right 3.639024e-04	k: 514	n:1540000
COBL   1540000 perm   1280 sec   (1203 perm/sec)   p_kst 3.337662e-04   p_cons 4.065584e-02   p_joint 1.129870e-04

Joint ci ratio: 2.946283e-01	ci left: 9.739292e-05	ci right 1.316178e-04	k: 176	n:1550000
Cons ci ratio: 1.529444e-02	ci left: 4.034704e-02	ci right 4.096951e-02	k: 63019	n:1550000
KS ci ratio: 1.717094e-01	ci left: 3.072691e-04	ci right 3.655922e-04	k: 520	n:1550000
COBL   1550000 perm   1294 sec   (1198 perm/sec)   p_kst 3.354839e-04   p_cons 4.065742e-02   p_joint 1.135484e-04

Joint ci ratio: 3.771890e-01	ci left: 5.621128e-05	ci right 8.288309e-05	k: 107	n:1560000
Cons ci ratio: 1.524666e-02	ci left: 4.034128e-02	ci right 4.096171e-02	k: 63415	n:1560000
KS ci ratio: 1.710540e-01	ci left: 3.077535e-04	ci right 3.659227e-04	k: 524	n:1560000
COBL   1560000 perm   1309 sec   (1192 perm/sec)   p_kst 3.358974e-04   p_cons 4.065064e-02   p_joint 6.858974e-05

Joint ci ratio: 3.771891e-01	ci left: 5.585324e-05	ci right 8.235518e-05	k: 107	n:1570000
Cons ci ratio: 1.519697e-02	ci left: 4.034766e-02	ci right 4.096614e-02	k: 63830	n:1570000
KS ci ratio: 1.705674e-01	ci left: 3.076225e-04	ci right 3.655844e-04	k: 527	n:1570000
COBL   1570000 perm   1323 sec   (1186 perm/sec)   p_kst 3.356688e-04   p_cons 4.065605e-02   p_joint 6.815287e-05

Joint ci ratio: 3.720567e-01	ci left: 5.721972e-05	ci right 8.391063e-05	k: 110	n:1580000
Cons ci ratio: 1.514851e-02	ci left: 4.035017e-02	ci right 4.096670e-02	k: 64239	n:1580000
KS ci ratio: 1.702453e-01	ci left: 3.068873e-04	ci right 3.645903e-04	k: 529	n:1580000
COBL   1580000 perm   1338 sec   (1181 perm/sec)   p_kst 3.348101e-04   p_cons 4.065759e-02   p_joint 6.962025e-05

Joint ci ratio: 3.703920e-01	ci left: 5.743010e-05	ci right 8.407024e-05	k: 111	n:1590000
Cons ci ratio: 1.510525e-02	ci left: 4.032822e-02	ci right 4.094264e-02	k: 64609	n:1590000
KS ci ratio: 1.694478e-01	ci left: 3.079682e-04	ci right 3.655755e-04	k: 534	n:1590000
COBL   1590000 perm   1352 sec   (1176 perm/sec)   p_kst 3.358491e-04   p_cons 4.063459e-02   p_joint 6.981132e-05

Joint ci ratio: 3.703921e-01	ci left: 5.707116e-05	ci right 8.354480e-05	k: 111	n:1600000
Cons ci ratio: 1.506260e-02	ci left: 4.030530e-02	ci right 4.091762e-02	k: 64977	n:1600000
KS ci ratio: 1.691320e-01	ci left: 3.072404e-04	ci right 3.645936e-04	k: 536	n:1600000
COBL   1600000 perm   1367 sec   (1171 perm/sec)   p_kst 3.350000e-04   p_cons 4.061062e-02   p_joint 6.937500e-05

Joint ci ratio: 3.687495e-01	ci left: 5.728012e-05	ci right 8.370444e-05	k: 112	n:1610000
Cons ci ratio: 1.501565e-02	ci left: 4.030680e-02	ci right 4.091722e-02	k: 65384	n:1610000
KS ci ratio: 1.681949e-01	ci left: 3.089015e-04	ci right 3.662129e-04	k: 542	n:1610000
COBL   1610000 perm   1382 sec   (1165 perm/sec)   p_kst 3.366460e-04   p_cons 4.061118e-02   p_joint 6.956522e-05

Joint ci ratio: 3.655288e-01	ci left: 5.804722e-05	ci right 8.453571e-05	k: 114	n:1620000
Cons ci ratio: 1.496901e-02	ci left: 4.030890e-02	ci right 4.091744e-02	k: 65792	n:1620000
KS ci ratio: 1.674257e-01	ci left: 3.099515e-04	ci right 3.671682e-04	k: 547	n:1620000
COBL   1620000 perm   1396 sec   (1160 perm/sec)   p_kst 3.376543e-04   p_cons 4.061235e-02   p_joint 7.037037e-05

Joint ci ratio: 3.639498e-01	ci left: 5.824837e-05	ci right 8.468657e-05	k: 115	n:1630000
Cons ci ratio: 1.492151e-02	ci left: 4.031770e-02	ci right 4.092442e-02	k: 66211	n:1630000
KS ci ratio: 1.669693e-01	ci left: 3.098135e-04	ci right 3.668331e-04	k: 550	n:1630000
COBL   1630000 perm   1411 sec   (1155 perm/sec)   p_kst 3.374233e-04   p_cons 4.062025e-02   p_joint 7.055215e-05

Joint ci ratio: 3.608522e-01	ci left: 5.900168e-05	ci right 8.550027e-05	k: 117	n:1640000
Cons ci ratio: 1.487597e-02	ci left: 4.031850e-02	ci right 4.092337e-02	k: 66617	n:1640000
KS ci ratio: 1.662168e-01	ci left: 3.108460e-04	ci right 3.677720e-04	k: 555	n:1640000
COBL   1640000 perm   1426 sec   (1150 perm/sec)   p_kst 3.384146e-04   p_cons 4.062012e-02   p_joint 7.134146e-05

Joint ci ratio: 3.608522e-01	ci left: 5.864409e-05	ci right 8.498209e-05	k: 117	n:1650000
Cons ci ratio: 1.483281e-02	ci left: 4.030903e-02	ci right 4.091198e-02	k: 67006	n:1650000
KS ci ratio: 1.654743e-01	ci left: 3.118667e-04	ci right 3.686991e-04	k: 560	n:1650000
COBL   1650000 perm   1442 sec   (1145 perm/sec)   p_kst 3.393939e-04   p_cons 4.060970e-02   p_joint 7.090909e-05

Joint ci ratio: 3.578324e-01	ci left: 5.938687e-05	ci right 8.578328e-05	k: 119	n:1660000
Cons ci ratio: 1.478808e-02	ci left: 4.030987e-02	ci right 4.091101e-02	k: 67412	n:1660000
KS ci ratio: 1.647417e-01	ci left: 3.128756e-04	ci right 3.696144e-04	k: 565	n:1660000
COBL   1660000 perm   1457 sec   (1140 perm/sec)   p_kst 3.403614e-04   p_cons 4.060964e-02   p_joint 7.168675e-05

Joint ci ratio: 3.548871e-01	ci left: 6.012167e-05	ci right 8.657398e-05	k: 121	n:1670000
Cons ci ratio: 1.474295e-02	ci left: 4.031489e-02	ci right 4.091425e-02	k: 67825	n:1670000
KS ci ratio: 1.640188e-01	ci left: 3.138729e-04	ci right 3.705182e-04	k: 570	n:1670000
COBL   1670000 perm   1472 sec   (1135 perm/sec)   p_kst 3.413174e-04   p_cons 4.061377e-02   p_joint 7.245509e-05

Joint ci ratio: 3.548871e-01	ci left: 5.976380e-05	ci right 8.605866e-05	k: 121	n:1680000
Cons ci ratio: 1.470296e-02	ci left: 4.029494e-02	ci right 4.089236e-02	k: 68196	n:1680000
KS ci ratio: 1.634473e-01	ci left: 3.142880e-04	ci right 3.707911e-04	k: 574	n:1680000
COBL   1680000 perm   1487 sec   (1130 perm/sec)   p_kst 3.416667e-04   p_cons 4.059286e-02   p_joint 7.202381e-05

Joint ci ratio: 3.534415e-01	ci left: 5.994924e-05	ci right 8.619358e-05	k: 122	n:1690000
Cons ci ratio: 1.465749e-02	ci left: 4.030588e-02	ci right 4.090161e-02	k: 68619	n:1690000
KS ci ratio: 1.631638e-01	ci left: 3.135634e-04	ci right 3.698289e-04	k: 576	n:1690000
COBL   1690000 perm   1502 sec   (1125 perm/sec)   p_kst 3.408284e-04   p_cons 4.060296e-02   p_joint 7.218935e-05

Joint ci ratio: 3.534416e-01	ci left: 5.959660e-05	ci right 8.568656e-05	k: 122	n:1700000
Cons ci ratio: 1.461885e-02	ci left: 4.028271e-02	ci right 4.087651e-02	k: 68984	n:1700000
KS ci ratio: 1.627413e-01	ci left: 3.134116e-04	ci right 3.694900e-04	k: 579	n:1700000
COBL   1700000 perm   1518 sec   (1120 perm/sec)   p_kst 3.405882e-04   p_cons 4.057882e-02   p_joint 7.176471e-05

Joint ci ratio: 3.534417e-01	ci left: 5.924808e-05	ci right 8.518547e-05	k: 122	n:1710000
Cons ci ratio: 1.457405e-02	ci left: 4.029419e-02	ci right 4.088632e-02	k: 69408	n:1710000
KS ci ratio: 1.619059e-01	ci left: 3.149451e-04	ci right 3.709804e-04	k: 585	n:1710000
COBL   1710000 perm   1533 sec   (1115 perm/sec)   p_kst 3.421053e-04   p_cons 4.058947e-02   p_joint 7.134503e-05

Joint ci ratio: 3.534418e-01	ci left: 5.890361e-05	ci right 8.469021e-05	k: 122	n:1720000
Cons ci ratio: 1.453617e-02	ci left: 4.027077e-02	ci right 4.086101e-02	k: 69772	n:1720000
KS ci ratio: 1.614931e-01	ci left: 3.147876e-04	ci right 3.706382e-04	k: 588	n:1720000
COBL   1720000 perm   1549 sec   (1111 perm/sec)   p_kst 3.418605e-04   p_cons 4.056512e-02   p_joint 7.093023e-05

Joint ci ratio: 3.506027e-01	ci left: 5.961698e-05	ci right 8.545855e-05	k: 124	n:1730000
Cons ci ratio: 1.449427e-02	ci left: 4.027067e-02	ci right 4.085919e-02	k: 70176	n:1730000
KS ci ratio: 1.608119e-01	ci left: 3.157417e-04	ci right 3.715024e-04	k: 593	n:1730000
COBL   1730000 perm   1564 sec   (1106 perm/sec)   p_kst 3.427746e-04   p_cons 4.056416e-02   p_joint 7.167630e-05

Joint ci ratio: 3.492086e-01	ci left: 5.979856e-05	ci right 8.559243e-05	k: 125	n:1740000
Cons ci ratio: 1.445306e-02	ci left: 4.026886e-02	ci right 4.085566e-02	k: 70577	n:1740000
KS ci ratio: 1.604073e-01	ci left: 3.155819e-04	ci right 3.711607e-04	k: 596	n:1740000
COBL   1740000 perm   1580 sec   (1102 perm/sec)   p_kst 3.425287e-04   p_cons 4.056149e-02   p_joint 7.183908e-05

Joint ci ratio: 3.478310e-01	ci left: 5.997827e-05	ci right 8.572458e-05	k: 126	n:1750000
Cons ci ratio: 1.440976e-02	ci left: 4.028016e-02	ci right 4.086536e-02	k: 71001	n:1750000
KS ci ratio: 1.598726e-01	ci left: 3.159727e-04	ci right 3.714171e-04	k: 600	n:1750000
COBL   1750000 perm   1595 sec   (1097 perm/sec)   p_kst 3.428571e-04   p_cons 4.057200e-02   p_joint 7.200000e-05

Joint ci ratio: 3.437939e-01	ci left: 6.119401e-05	ci right 8.708951e-05	k: 129	n:1760000
Cons ci ratio: 1.436517e-02	ci left: 4.030040e-02	ci right 4.088407e-02	k: 71441	n:1760000
KS ci ratio: 1.592117e-01	ci left: 3.169049e-04	ci right 3.722610e-04	k: 605	n:1760000
COBL   1760000 perm   1611 sec   (1093 perm/sec)   p_kst 3.437500e-04   p_cons 4.059148e-02   p_joint 7.329545e-05

Joint ci ratio: 3.411794e-01	ci left: 6.188105e-05	ci right 8.782423e-05	k: 131	n:1770000
Cons ci ratio: 1.432640e-02	ci left: 4.029114e-02	ci right 4.087308e-02	k: 71829	n:1770000
KS ci ratio: 1.586888e-01	ci left: 3.172845e-04	ci right 3.725075e-04	k: 609	n:1770000
COBL   1770000 perm   1627 sec   (1088 perm/sec)   p_kst 3.440678e-04   p_cons 4.058136e-02   p_joint 7.401130e-05

Joint ci ratio: 3.386236e-01	ci left: 6.256110e-05	ci right 8.854997e-05	k: 133	n:1780000
Cons ci ratio: 1.428804e-02	ci left: 4.028142e-02	ci right 4.086165e-02	k: 72216	n:1780000
KS ci ratio: 1.580423e-01	ci left: 3.181997e-04	ci right 3.733349e-04	k: 614	n:1780000
COBL   1780000 perm   1642 sec   (1084 perm/sec)   p_kst 3.449438e-04   p_cons 4.057079e-02   p_joint 7.471910e-05

Joint ci ratio: 3.373671e-01	ci left: 6.272285e-05	ci right 8.866117e-05	k: 134	n:1790000
Cons ci ratio: 1.424692e-02	ci left: 4.028851e-02	ci right 4.086716e-02	k: 72633	n:1790000
KS ci ratio: 1.572768e-01	ci left: 3.196417e-04	ci right 3.747333e-04	k: 620	n:1790000
COBL   1790000 perm   1659 sec   (1079 perm/sec)   p_kst 3.463687e-04   p_cons 4.057709e-02   p_joint 7.486034e-05

Joint ci ratio: 3.348954e-01	ci left: 6.339174e-05	ci right 8.937315e-05	k: 136	n:1800000
Cons ci ratio: 1.420676e-02	ci left: 4.029221e-02	ci right 4.086927e-02	k: 73044	n:1800000
KS ci ratio: 1.567727e-01	ci left: 3.200009e-04	ci right 3.749610e-04	k: 624	n:1800000
COBL   1800000 perm   1674 sec   (1075 perm/sec)   p_kst 3.466667e-04   p_cons 4.058000e-02   p_joint 7.555556e-05

Joint ci ratio: 3.348954e-01	ci left: 6.304150e-05	ci right 8.887938e-05	k: 136	n:1810000
Cons ci ratio: 1.416864e-02	ci left: 4.028651e-02	ci right 4.086193e-02	k: 73438	n:1810000
KS ci ratio: 1.563978e-01	ci left: 3.198254e-04	ci right 3.746117e-04	k: 627	n:1810000
COBL   1810000 perm   1690 sec   (1071 perm/sec)   p_kst 3.464088e-04   p_cons 4.057348e-02   p_joint 7.513812e-05

Joint ci ratio: 3.348955e-01	ci left: 6.269512e-05	ci right 8.839103e-05	k: 136	n:1820000
Cons ci ratio: 1.412884e-02	ci left: 4.029182e-02	ci right 4.086569e-02	k: 73852	n:1820000
KS ci ratio: 1.557789e-01	ci left: 3.207081e-04	ci right 3.754079e-04	k: 632	n:1820000
COBL   1820000 perm   1707 sec   (1066 perm/sec)   p_kst 3.472527e-04   p_cons 4.057802e-02   p_joint 7.472527e-05

Joint ci ratio: 3.324773e-01	ci left: 6.335387e-05	ci right 8.909214e-05	k: 138	n:1830000
Cons ci ratio: 1.409195e-02	ci left: 4.028292e-02	ci right 4.085515e-02	k: 74240	n:1830000
KS ci ratio: 1.556561e-01	ci left: 3.194807e-04	ci right 3.739242e-04	k: 633	n:1830000
COBL   1830000 perm   1723 sec   (1062 perm/sec)   p_kst 3.459016e-04   p_cons 4.056831e-02   p_joint 7.540984e-05

Joint ci ratio: 3.312878e-01	ci left: 6.350775e-05	ci right 8.919654e-05	k: 139	n:1840000
Cons ci ratio: 1.405602e-02	ci left: 4.027033e-02	ci right 4.084090e-02	k: 74621	n:1840000
KS ci ratio: 1.552891e-01	ci left: 3.193114e-04	ci right 3.735858e-04	k: 636	n:1840000
COBL   1840000 perm   1740 sec   (1058 perm/sec)   p_kst 3.456522e-04   p_cons 4.055489e-02   p_joint 7.554348e-05

Joint ci ratio: 3.289464e-01	ci left: 6.415596e-05	ci right 8.988475e-05	k: 141	n:1850000
Cons ci ratio: 1.401979e-02	ci left: 4.026110e-02	ci right 4.083007e-02	k: 75008	n:1850000
KS ci ratio: 1.548038e-01	ci left: 3.196637e-04	ci right 3.738124e-04	k: 640	n:1850000
COBL   1850000 perm   1757 sec   (1053 perm/sec)   p_kst 3.459459e-04   p_cons 4.054486e-02   p_joint 7.621622e-05

Joint ci ratio: 3.266539e-01	ci left: 6.479783e-05	ci right 9.056494e-05	k: 143	n:1860000
Cons ci ratio: 1.398403e-02	ci left: 4.025091e-02	ci right 4.081827e-02	k: 75393	n:1860000
KS ci ratio: 1.542035e-01	ci left: 3.205293e-04	ci right 3.745947e-04	k: 645	n:1860000
COBL   1860000 perm   1773 sec   (1049 perm/sec)   p_kst 3.467742e-04   p_cons 4.053387e-02   p_joint 7.688172e-05

Joint ci ratio: 3.255256e-01	ci left: 6.494231e-05	ci right 9.065901e-05	k: 144	n:1870000
Cons ci ratio: 1.394758e-02	ci left: 4.024615e-02	ci right 4.081195e-02	k: 75788	n:1870000
KS ci ratio: 1.539654e-01	ci left: 3.198436e-04	ci right 3.737022e-04	k: 647	n:1870000
COBL   1870000 perm   1790 sec   (1045 perm/sec)   p_kst 3.459893e-04   p_cons 4.052834e-02   p_joint 7.700535e-05

Joint ci ratio: 3.255256e-01	ci left: 6.459687e-05	ci right 9.017679e-05	k: 144	n:1880000
Cons ci ratio: 1.391094e-02	ci left: 4.024410e-02	ci right 4.080838e-02	k: 76188	n:1880000
KS ci ratio: 1.536103e-01	ci left: 3.196766e-04	ci right 3.733715e-04	k: 650	n:1880000
COBL   1880000 perm   1806 sec   (1041 perm/sec)   p_kst 3.457447e-04   p_cons 4.052553e-02   p_joint 7.659574e-05

Joint ci ratio: 3.233035e-01	ci left: 6.522713e-05	ci right 9.084373e-05	k: 146	n:1890000
Cons ci ratio: 1.387525e-02	ci left: 4.023838e-02	ci right 4.080112e-02	k: 76581	n:1890000
KS ci ratio: 1.531405e-01	ci left: 3.200204e-04	ci right 3.735936e-04	k: 654	n:1890000
COBL   1890000 perm   1823 sec   (1037 perm/sec)   p_kst 3.460317e-04   p_cons 4.051905e-02   p_joint 7.724868e-05

Joint ci ratio: 3.222094e-01	ci left: 6.536751e-05	ci right 9.093442e-05	k: 147	n:1900000
Cons ci ratio: 1.383786e-02	ci left: 4.024374e-02	ci right 4.080503e-02	k: 76995	n:1900000
KS ci ratio: 1.529073e-01	ci left: 3.193484e-04	ci right 3.727202e-04	k: 656	n:1900000
COBL   1900000 perm   1840 sec   (1033 perm/sec)   p_kst 3.452632e-04   p_cons 4.052368e-02   p_joint 7.736842e-05

Joint ci ratio: 3.211263e-01	ci left: 6.550656e-05	ci right 9.102401e-05	k: 148	n:1910000
Cons ci ratio: 1.380124e-02	ci left: 4.024644e-02	ci right 4.080626e-02	k: 77404	n:1910000
KS ci ratio: 1.524439e-01	ci left: 3.196906e-04	ci right 3.729430e-04	k: 660	n:1910000
COBL   1910000 perm   1857 sec   (1029 perm/sec)   p_kst 3.455497e-04   p_cons 4.052565e-02   p_joint 7.748691e-05

Joint ci ratio: 3.179413e-01	ci left: 6.660259e-05	ci right 9.223731e-05	k: 151	n:1920000
Cons ci ratio: 1.376647e-02	ci left: 4.024029e-02	ci right 4.079860e-02	k: 77796	n:1920000
KS ci ratio: 1.523288e-01	ci left: 3.185265e-04	ci right 3.715413e-04	k: 661	n:1920000
COBL   1920000 perm   1874 sec   (1025 perm/sec)   p_kst 3.442708e-04   p_cons 4.051875e-02   p_joint 7.864583e-05

Joint ci ratio: 3.179414e-01	ci left: 6.625750e-05	ci right 9.175940e-05	k: 151	n:1930000
Cons ci ratio: 1.372904e-02	ci left: 4.025072e-02	ci right 4.080765e-02	k: 78220	n:1930000
KS ci ratio: 1.519848e-01	ci left: 3.183714e-04	ci right 3.712297e-04	k: 664	n:1930000
COBL   1930000 perm   1891 sec   (1021 perm/sec)   p_kst 3.440415e-04   p_cons 4.052850e-02   p_joint 7.823834e-05

Joint ci ratio: 3.158700e-01	ci left: 6.686491e-05	ci right 9.239906e-05	k: 153	n:1940000
Cons ci ratio: 1.369327e-02	ci left: 4.025335e-02	ci right 4.080885e-02	k: 78629	n:1940000
KS ci ratio: 1.513037e-01	ci left: 3.197057e-04	ci right 3.725262e-04	k: 670	n:1940000
COBL   1940000 perm   1908 sec   (1017 perm/sec)   p_kst 3.453608e-04   p_cons 4.053041e-02   p_joint 7.886598e-05

Joint ci ratio: 3.158700e-01	ci left: 6.652201e-05	ci right 9.192522e-05	k: 153	n:1950000
Cons ci ratio: 1.365860e-02	ci left: 4.025135e-02	ci right 4.080540e-02	k: 79029	n:1950000
KS ci ratio: 1.510788e-01	ci left: 3.190530e-04	ci right 3.716802e-04	k: 672	n:1950000
COBL   1950000 perm   1925 sec   (1013 perm/sec)   p_kst 3.446154e-04   p_cons 4.052769e-02   p_joint 7.846154e-05

Joint ci ratio: 3.158701e-01	ci left: 6.618261e-05	ci right 9.145622e-05	k: 153	n:1960000
Cons ci ratio: 1.362213e-02	ci left: 4.026106e-02	ci right 4.081376e-02	k: 79452	n:1960000
KS ci ratio: 1.508548e-01	ci left: 3.184071e-04	ci right 3.708429e-04	k: 674	n:1960000
COBL   1960000 perm   1943 sec   (1009 perm/sec)   p_kst 3.438776e-04   p_cons 4.053673e-02   p_joint 7.806122e-05

Joint ci ratio: 4.064754e-01	ci left: 3.764736e-05	ci right 5.727372e-05	k: 92	n:1970000
Cons ci ratio: 1.358550e-02	ci left: 4.027321e-02	ci right 4.082458e-02	k: 79880	n:1970000
KS ci ratio: 1.506319e-01	ci left: 3.177677e-04	ci right 3.700139e-04	k: 676	n:1970000
COBL   1970000 perm   1960 sec   (1005 perm/sec)   p_kst 3.431472e-04   p_cons 4.054822e-02   p_joint 4.670051e-05

Joint ci ratio: 4.064754e-01	ci left: 3.745722e-05	ci right 5.698446e-05	k: 92	n:1980000
Cons ci ratio: 1.354979e-02	ci left: 4.028172e-02	ci right 4.083175e-02	k: 80301	n:1980000
KS ci ratio: 1.505209e-01	ci left: 3.166488e-04	ci right 3.686692e-04	k: 677	n:1980000
COBL   1980000 perm   1977 sec   (1001 perm/sec)   p_kst 3.419192e-04   p_cons 4.055606e-02   p_joint 4.646465e-05

Joint ci ratio: 4.064755e-01	ci left: 3.726899e-05	ci right 5.669811e-05	k: 92	n:1990000
Cons ci ratio: 1.351392e-02	ci left: 4.029265e-02	ci right 4.084135e-02	k: 80727	n:1990000
KS ci ratio: 1.504101e-01	ci left: 3.155412e-04	ci right 3.673381e-04	k: 678	n:1990000
COBL   1990000 perm   1994 sec   (998 perm/sec)   p_kst 3.407035e-04   p_cons 4.056633e-02   p_joint 4.623116e-05

Joint ci ratio: 4.064755e-01	ci left: 3.708265e-05	ci right 5.641462e-05	k: 92	n:2000000
Cons ci ratio: 1.348292e-02	ci left: 4.027705e-02	ci right 4.082428e-02	k: 81100	n:2000000
KS ci ratio: 1.502995e-01	ci left: 3.144447e-04	ci right 3.660202e-04	k: 679	n:2000000
COBL   2000000 perm   2012 sec   (994 perm/sec)   p_kst 3.395000e-04   p_cons 4.055000e-02   p_joint 4.600000e-05

Joint ci ratio: 4.064756e-01	ci left: 3.689816e-05	ci right 5.613395e-05	k: 92	n:2010000
Cons ci ratio: 1.345084e-02	ci left: 4.026905e-02	ci right 4.081486e-02	k: 81488	n:2010000
KS ci ratio: 1.500791e-01	ci left: 3.138379e-04	ci right 3.652316e-04	k: 681	n:2010000
COBL   2010000 perm   2030 sec   (990 perm/sec)   p_kst 3.388060e-04   p_cons 4.054129e-02   p_joint 4.577114e-05

Joint ci ratio: 4.064756e-01	ci left: 3.671549e-05	ci right 5.585606e-05	k: 92	n:2020000
Cons ci ratio: 1.341780e-02	ci left: 4.026804e-02	ci right 4.081248e-02	k: 81890	n:2020000
KS ci ratio: 1.500792e-01	ci left: 3.122842e-04	ci right 3.634235e-04	k: 681	n:2020000
COBL   2020000 perm   2048 sec   (986 perm/sec)   p_kst 3.371287e-04   p_cons 4.053960e-02   p_joint 4.554455e-05

Joint ci ratio: 4.064757e-01	ci left: 3.653463e-05	ci right 5.558091e-05	k: 92	n:2030000
Cons ci ratio: 1.338296e-02	ci left: 4.027883e-02	ci right 4.082199e-02	k: 82316	n:2030000
KS ci ratio: 1.500793e-01	ci left: 3.107459e-04	ci right 3.616333e-04	k: 681	n:2030000
COBL   2030000 perm   2066 sec   (983 perm/sec)   p_kst 3.354680e-04   p_cons 4.054975e-02   p_joint 4.532020e-05

Joint ci ratio: 4.043077e-01	ci left: 3.679574e-05	ci right 5.584838e-05	k: 93	n:2040000
Cons ci ratio: 1.335311e-02	ci left: 4.026215e-02	ci right 4.080386e-02	k: 82686	n:2040000
KS ci ratio: 1.497503e-01	ci left: 3.106380e-04	ci right 3.613863e-04	k: 684	n:2040000
COBL   2040000 perm   2084 sec   (979 perm/sec)   p_kst 3.352941e-04   p_cons 4.053235e-02   p_joint 4.558824e-05

Joint ci ratio: 4.043078e-01	ci left: 3.661625e-05	ci right 5.557595e-05	k: 93	n:2050000
Cons ci ratio: 1.332145e-02	ci left: 4.025730e-02	ci right 4.079766e-02	k: 83080	n:2050000
KS ci ratio: 1.495322e-01	ci left: 3.100618e-04	ci right 3.606356e-04	k: 686	n:2050000
COBL   2050000 perm   2102 sec   (975 perm/sec)   p_kst 3.346341e-04   p_cons 4.052683e-02   p_joint 4.536585e-05

Joint ci ratio: 4.043078e-01	ci left: 3.643850e-05	ci right 5.530617e-05	k: 93	n:2060000
Cons ci ratio: 1.328570e-02	ci left: 4.027766e-02	ci right 4.081683e-02	k: 83526	n:2060000
KS ci ratio: 1.488834e-01	ci left: 3.113605e-04	ci right 3.619062e-04	k: 692	n:2060000
COBL   2060000 perm   2120 sec   (972 perm/sec)   p_kst 3.359223e-04   p_cons 4.054660e-02   p_joint 4.514563e-05

Joint ci ratio: 4.021742e-01	ci left: 3.669656e-05	ci right 5.557083e-05	k: 94	n:2070000
Cons ci ratio: 1.325287e-02	ci left: 4.028242e-02	ci right 4.082031e-02	k: 83940	n:2070000
KS ci ratio: 1.485622e-01	ci left: 3.112517e-04	ci right 3.616610e-04	k: 695	n:2070000
COBL   2070000 perm   2139 sec   (968 perm/sec)   p_kst 3.357488e-04   p_cons 4.055072e-02   p_joint 4.541063e-05

Joint ci ratio: 4.021742e-01	ci left: 3.652013e-05	ci right 5.530366e-05	k: 94	n:2080000
Cons ci ratio: 1.322240e-02	ci left: 4.027468e-02	ci right 4.081122e-02	k: 84328	n:2080000
KS ci ratio: 1.475061e-01	ci left: 3.143850e-04	ci right 3.649078e-04	k: 705	n:2080000
COBL   2080000 perm   2158 sec   (964 perm/sec)   p_kst 3.389423e-04   p_cons 4.054231e-02   p_joint 4.519231e-05

Joint ci ratio: 4.021743e-01	ci left: 3.634540e-05	ci right 5.503905e-05	k: 94	n:2090000
Cons ci ratio: 1.318963e-02	ci left: 4.028179e-02	ci right 4.081709e-02	k: 84747	n:2090000
KS ci ratio: 1.470900e-01	ci left: 3.147241e-04	ci right 3.651462e-04	k: 709	n:2090000
COBL   2090000 perm   2177 sec   (960 perm/sec)   p_kst 3.392344e-04   p_cons 4.054880e-02   p_joint 4.497608e-05

Joint ci ratio: 4.000741e-01	ci left: 3.660047e-05	ci right 5.530095e-05	k: 95	n:2100000
Cons ci ratio: 1.315750e-02	ci left: 4.028647e-02	ci right 4.082051e-02	k: 85161	n:2100000
KS ci ratio: 1.467802e-01	ci left: 3.146015e-04	ci right 3.648885e-04	k: 712	n:2100000
COBL   2100000 perm   2195 sec   (957 perm/sec)   p_kst 3.390476e-04   p_cons 4.055286e-02   p_joint 4.523810e-05

Joint ci ratio: 4.000741e-01	ci left: 3.642701e-05	ci right 5.503886e-05	k: 95	n:2110000
Cons ci ratio: 1.312633e-02	ci left: 4.028685e-02	ci right 4.081963e-02	k: 85566	n:2110000
KS ci ratio: 1.464724e-01	ci left: 3.144801e-04	ci right 3.646331e-04	k: 715	n:2110000
COBL   2110000 perm   2214 sec   (953 perm/sec)   p_kst 3.388626e-04   p_cons 4.055261e-02   p_joint 4.502370e-05

Joint ci ratio: 4.000742e-01	ci left: 3.625518e-05	ci right 5.477924e-05	k: 95	n:2120000
Cons ci ratio: 1.309617e-02	ci left: 4.028253e-02	ci right 4.081401e-02	k: 85961	n:2120000
KS ci ratio: 1.463703e-01	ci left: 3.134511e-04	ci right 3.634021e-04	k: 716	n:2120000
COBL   2120000 perm   2232 sec   (950 perm/sec)   p_kst 3.377358e-04   p_cons 4.054764e-02   p_joint 4.481132e-05

Joint ci ratio: 4.000742e-01	ci left: 3.608497e-05	ci right 5.452206e-05	k: 95	n:2130000
Cons ci ratio: 1.306322e-02	ci left: 4.029603e-02	ci right 4.082635e-02	k: 86394	n:2130000
KS ci ratio: 1.461666e-01	ci left: 3.128841e-04	ci right 3.626693e-04	k: 718	n:2130000
COBL   2130000 perm   2251 sec   (946 perm/sec)   p_kst 3.370892e-04   p_cons 4.056056e-02   p_joint 4.460094e-05

Joint ci ratio: 4.000743e-01	ci left: 3.591635e-05	ci right 5.426729e-05	k: 95	n:2140000
Cons ci ratio: 1.303256e-02	ci left: 4.029730e-02	ci right 4.082638e-02	k: 86801	n:2140000
KS ci ratio: 1.457617e-01	ci left: 3.132229e-04	ci right 3.629119e-04	k: 722	n:2140000
COBL   2140000 perm   2270 sec   (943 perm/sec)   p_kst 3.373832e-04   p_cons 4.056121e-02   p_joint 4.439252e-05

Joint ci ratio: 4.000743e-01	ci left: 3.574929e-05	ci right 5.401489e-05	k: 95	n:2150000
Cons ci ratio: 1.300024e-02	ci left: 4.030968e-02	ci right 4.083760e-02	k: 87232	n:2150000
KS ci ratio: 1.453601e-01	ci left: 3.135588e-04	ci right 3.631521e-04	k: 726	n:2150000
COBL   2150000 perm   2288 sec   (940 perm/sec)   p_kst 3.376744e-04   p_cons 4.057302e-02   p_joint 4.418605e-05

Joint ci ratio: 3.980067e-01	ci left: 3.600029e-05	ci right 5.427401e-05	k: 96	n:2160000
Cons ci ratio: 1.297117e-02	ci left: 4.030396e-02	ci right 4.083061e-02	k: 87624	n:2160000
KS ci ratio: 1.450612e-01	ci left: 3.134455e-04	ci right 3.629102e-04	k: 729	n:2160000
COBL   2160000 perm   2308 sec   (936 perm/sec)   p_kst 3.375000e-04   p_cons 4.056667e-02   p_joint 4.444444e-05

Joint ci ratio: 3.980067e-01	ci left: 3.583439e-05	ci right 5.402390e-05	k: 96	n:2170000
Cons ci ratio: 1.294437e-02	ci left: 4.028588e-02	ci right 4.081120e-02	k: 87989	n:2170000
KS ci ratio: 1.449620e-01	ci left: 3.124452e-04	ci right 3.617154e-04	k: 730	n:2170000
COBL   2170000 perm   2329 sec   (932 perm/sec)   p_kst 3.364055e-04   p_cons 4.054793e-02   p_joint 4.423963e-05

Joint ci ratio: 3.980068e-01	ci left: 3.567001e-05	ci right 5.377608e-05	k: 96	n:2180000
Cons ci ratio: 1.291605e-02	ci left: 4.027803e-02	ci right 4.080209e-02	k: 88376	n:2180000
KS ci ratio: 1.444687e-01	ci left: 3.132225e-04	ci right 3.624327e-04	k: 735	n:2180000
COBL   2180000 perm   2349 sec   (928 perm/sec)   p_kst 3.371560e-04   p_cons 4.053945e-02   p_joint 4.403670e-05

Joint ci ratio: 3.959708e-01	ci left: 3.591816e-05	ci right 5.403251e-05	k: 97	n:2190000
Cons ci ratio: 1.288777e-02	ci left: 4.027116e-02	ci right 4.079398e-02	k: 88765	n:2190000
KS ci ratio: 1.439804e-01	ci left: 3.139930e-04	ci right 3.631432e-04	k: 740	n:2190000
COBL   2190000 perm   2368 sec   (925 perm/sec)   p_kst 3.378995e-04   p_cons 4.053196e-02   p_joint 4.429224e-05

Joint ci ratio: 3.959709e-01	ci left: 3.575490e-05	ci right 5.378691e-05	k: 97	n:2200000
Cons ci ratio: 1.285780e-02	ci left: 4.027569e-02	ci right 4.079734e-02	k: 89179	n:2200000
KS ci ratio: 1.437865e-01	ci left: 3.134421e-04	ci right 3.624343e-04	k: 742	n:2200000
COBL   2200000 perm   2387 sec   (922 perm/sec)   p_kst 3.372727e-04   p_cons 4.053591e-02   p_joint 4.409091e-05

Joint ci ratio: 3.959709e-01	ci left: 3.559311e-05	ci right 5.354353e-05	k: 97	n:2210000
Cons ci ratio: 1.282900e-02	ci left: 4.027431e-02	ci right 4.079477e-02	k: 89580	n:2210000
KS ci ratio: 1.435934e-01	ci left: 3.128963e-04	ci right 3.617318e-04	k: 744	n:2210000
COBL   2210000 perm   2406 sec   (918 perm/sec)   p_kst 3.366516e-04   p_cons 4.053394e-02   p_joint 4.389140e-05

Joint ci ratio: 3.959710e-01	ci left: 3.543278e-05	ci right 5.330234e-05	k: 97	n:2220000
Cons ci ratio: 1.279802e-02	ci left: 4.028732e-02	ci right 4.080668e-02	k: 90013	n:2220000
KS ci ratio: 1.433052e-01	ci left: 3.127897e-04	ci right 3.615022e-04	k: 747	n:2220000
COBL   2220000 perm   2426 sec   (915 perm/sec)   p_kst 3.364865e-04   p_cons 4.054640e-02   p_joint 4.369369e-05

Joint ci ratio: 3.939660e-01	ci left: 3.567778e-05	ci right 5.355607e-05	k: 98	n:2230000
Cons ci ratio: 1.276962e-02	ci left: 4.028590e-02	ci right 4.080408e-02	k: 90414	n:2230000
KS ci ratio: 1.429236e-01	ci left: 3.131165e-04	ci right 3.617390e-04	k: 751	n:2230000
COBL   2230000 perm   2445 sec   (912 perm/sec)   p_kst 3.367713e-04   p_cons 4.054439e-02   p_joint 4.394619e-05

Joint ci ratio: 3.919912e-01	ci left: 3.592082e-05	ci right 5.380731e-05	k: 99	n:2240000
Cons ci ratio: 1.274002e-02	ci left: 4.029296e-02	ci right 4.081002e-02	k: 90834	n:2240000
KS ci ratio: 1.426393e-01	ci left: 3.130101e-04	ci right 3.615112e-04	k: 754	n:2240000
COBL   2240000 perm   2465 sec   (909 perm/sec)   p_kst 3.366071e-04   p_cons 4.055089e-02   p_joint 4.419643e-05

Joint ci ratio: 3.919912e-01	ci left: 3.576117e-05	ci right 5.356816e-05	k: 99	n:2250000
Cons ci ratio: 1.270918e-02	ci left: 4.030881e-02	ci right 4.082481e-02	k: 91274	n:2250000
KS ci ratio: 1.422630e-01	ci left: 3.133334e-04	ci right 3.617456e-04	k: 758	n:2250000
COBL   2250000 perm   2485 sec   (906 perm/sec)   p_kst 3.368889e-04   p_cons 4.056622e-02   p_joint 4.400000e-05

Joint ci ratio: 3.919912e-01	ci left: 3.560293e-05	ci right 5.333114e-05	k: 99	n:2260000
Cons ci ratio: 1.268209e-02	ci left: 4.030291e-02	ci right 4.081773e-02	k: 91665	n:2260000
KS ci ratio: 1.420759e-01	ci left: 3.128004e-04	ci right 3.610614e-04	k: 760	n:2260000
COBL   2260000 perm   2505 sec   (902 perm/sec)   p_kst 3.362832e-04   p_cons 4.055973e-02   p_joint 4.380531e-05

Joint ci ratio: 3.881290e-01	ci left: 3.624074e-05	ci right 5.406325e-05	k: 101	n:2270000
Cons ci ratio: 1.265309e-02	ci left: 4.030981e-02	ci right 4.082353e-02	k: 92085	n:2270000
KS ci ratio: 1.415191e-01	ci left: 3.139719e-04	ci right 3.622077e-04	k: 766	n:2270000
COBL   2270000 perm   2524 sec   (899 perm/sec)   p_kst 3.374449e-04   p_cons 4.056608e-02   p_joint 4.449339e-05

Joint ci ratio: 3.862403e-01	ci left: 3.647769e-05	ci right 5.430721e-05	k: 102	n:2280000
Cons ci ratio: 1.262436e-02	ci left: 4.031620e-02	ci right 4.082883e-02	k: 92504	n:2280000
KS ci ratio: 1.411514e-01	ci left: 3.142872e-04	ci right 3.624354e-04	k: 770	n:2280000
COBL   2280000 perm   2544 sec   (896 perm/sec)   p_kst 3.377193e-04   p_cons 4.057193e-02   p_joint 4.473684e-05

Joint ci ratio: 3.862403e-01	ci left: 3.631840e-05	ci right 5.407007e-05	k: 102	n:2290000
Cons ci ratio: 1.259498e-02	ci left: 4.032776e-02	ci right 4.083934e-02	k: 92935	n:2290000
KS ci ratio: 1.410601e-01	ci left: 3.133360e-04	ci right 3.613048e-04	k: 771	n:2290000
COBL   2290000 perm   2564 sec   (893 perm/sec)   p_kst 3.366812e-04   p_cons 4.058297e-02   p_joint 4.454148e-05

Joint ci ratio: 3.862403e-01	ci left: 3.616049e-05	ci right 5.383498e-05	k: 102	n:2300000
Cons ci ratio: 1.256693e-02	ci left: 4.033229e-02	ci right 4.084278e-02	k: 93350	n:2300000
KS ci ratio: 1.406960e-01	ci left: 3.136515e-04	ci right 3.615343e-04	k: 775	n:2300000
COBL   2300000 perm   2584 sec   (890 perm/sec)   p_kst 3.369565e-04   p_cons 4.058696e-02   p_joint 4.434783e-05

Joint ci ratio: 3.862404e-01	ci left: 3.600395e-05	ci right 5.360193e-05	k: 102	n:2310000
Cons ci ratio: 1.254102e-02	ci left: 4.032470e-02	ci right 4.083403e-02	k: 93737	n:2310000
KS ci ratio: 1.405151e-01	ci left: 3.131290e-04	ci right 3.608655e-04	k: 777	n:2310000
COBL   2310000 perm   2605 sec   (887 perm/sec)   p_kst 3.363636e-04   p_cons 4.057879e-02   p_joint 4.415584e-05

Joint ci ratio: 3.843789e-01	ci left: 3.623804e-05	ci right 5.384348e-05	k: 103	n:2320000
Cons ci ratio: 1.251561e-02	ci left: 4.031503e-02	ci right 4.082319e-02	k: 94119	n:2320000
KS ci ratio: 1.402450e-01	ci left: 3.130270e-04	ci right 3.606485e-04	k: 780	n:2320000
COBL   2320000 perm   2625 sec   (884 perm/sec)   p_kst 3.362069e-04   p_cons 4.056853e-02   p_joint 4.439655e-05

Joint ci ratio: 3.843790e-01	ci left: 3.608252e-05	ci right 5.361239e-05	k: 103	n:2330000
Cons ci ratio: 1.248767e-02	ci left: 4.032212e-02	ci right 4.082923e-02	k: 94540	n:2330000
KS ci ratio: 1.399764e-01	ci left: 3.129260e-04	ci right 3.604333e-04	k: 783	n:2330000
COBL   2330000 perm   2645 sec   (881 perm/sec)   p_kst 3.360515e-04   p_cons 4.057511e-02   p_joint 4.420601e-05

Joint ci ratio: 3.843790e-01	ci left: 3.592832e-05	ci right 5.338328e-05	k: 103	n:2340000
Cons ci ratio: 1.246039e-02	ci left: 4.032618e-02	ci right 4.083222e-02	k: 94954	n:2340000
KS ci ratio: 1.398873e-01	ci left: 3.120011e-04	ci right 3.593353e-04	k: 784	n:2340000
COBL   2340000 perm   2665 sec   (878 perm/sec)   p_kst 3.350427e-04   p_cons 4.057863e-02   p_joint 4.401709e-05

Joint ci ratio: 3.843790e-01	ci left: 3.577543e-05	ci right 5.315612e-05	k: 103	n:2350000
Cons ci ratio: 1.243343e-02	ci left: 4.032935e-02	ci right 4.083434e-02	k: 95366	n:2350000
KS ci ratio: 1.395322e-01	ci left: 3.123160e-04	ci right 3.595678e-04	k: 788	n:2350000
COBL   2350000 perm   2687 sec   (875 perm/sec)   p_kst 3.353191e-04   p_cons 4.058128e-02   p_joint 4.382979e-05

Joint ci ratio: 3.843791e-01	ci left: 3.562384e-05	ci right 5.293088e-05	k: 103	n:2360000
Cons ci ratio: 1.240799e-02	ci left: 4.032405e-02	ci right 4.082793e-02	k: 95758	n:2360000
KS ci ratio: 1.395323e-01	ci left: 3.109926e-04	ci right 3.580443e-04	k: 788	n:2360000
COBL   2360000 perm   2707 sec   (872 perm/sec)   p_kst 3.338983e-04   p_cons 4.057542e-02   p_joint 4.364407e-05

Joint ci ratio: 3.789521e-01	ci left: 3.661791e-05	ci right 5.409424e-05	k: 106	n:2370000
Cons ci ratio: 1.238177e-02	ci left: 4.032468e-02	ci right 4.082750e-02	k: 96164	n:2370000
KS ci ratio: 1.390047e-01	ci left: 3.121239e-04	ci right 3.591533e-04	k: 794	n:2370000
COBL   2370000 perm   2728 sec   (869 perm/sec)   p_kst 3.350211e-04   p_cons 4.057553e-02   p_joint 4.472574e-05

Joint ci ratio: 3.789521e-01	ci left: 3.646405e-05	ci right 5.386695e-05	k: 106	n:2380000
Cons ci ratio: 1.235745e-02	ci left: 4.031442e-02	ci right 4.081611e-02	k: 96544	n:2380000
KS ci ratio: 1.384831e-01	ci left: 3.132460e-04	ci right 3.602527e-04	k: 800	n:2380000
COBL   2380000 perm   2749 sec   (866 perm/sec)   p_kst 3.361345e-04   p_cons 4.056471e-02   p_joint 4.453782e-05

Joint ci ratio: 1.596146e-01	ci left: 2.321633e-04	ci right 2.728294e-04	k: 602	n:2390000
Cons ci ratio: 1.289447e-02	ci left: 3.698962e-02	ci right 3.747008e-02	k: 88978	n:2390000
KS ci ratio: 1.380528e-01	ci left: 3.139550e-04	ci right 3.609097e-04	k: 805	n:2390000
COBL   2390000 perm   2770 sec   (863 perm/sec)   p_kst 3.368201e-04   p_cons 3.722929e-02   p_joint 2.518828e-04

Joint ci ratio: 1.590877e-01	ci left: 2.327962e-04	ci right 2.734256e-04	k: 606	n:2400000
Cons ci ratio: 1.286768e-02	ci left: 3.698958e-02	ci right 3.746904e-02	k: 89349	n:2400000
KS ci ratio: 1.379673e-01	ci left: 3.130491e-04	ci right 3.598370e-04	k: 806	n:2400000
COBL   2400000 perm   2791 sec   (860 perm/sec)   p_kst 3.358333e-04   p_cons 3.722875e-02   p_joint 2.525000e-04

Joint ci ratio: 1.588263e-01	ci left: 2.326271e-04	ci right 2.731540e-04	k: 608	n:2410000
Cons ci ratio: 1.284157e-02	ci left: 3.698665e-02	ci right 3.746509e-02	k: 89713	n:2410000
KS ci ratio: 1.376266e-01	ci left: 3.133527e-04	ci right 3.600608e-04	k: 810	n:2410000
COBL   2410000 perm   2812 sec   (857 perm/sec)   p_kst 3.360996e-04   p_cons 3.722531e-02   p_joint 2.522822e-04

Joint ci ratio: 1.583072e-01	ci left: 2.332531e-04	ci right 2.737436e-04	k: 612	n:2420000
Cons ci ratio: 1.281562e-02	ci left: 3.698374e-02	ci right 3.746117e-02	k: 90077	n:2420000
KS ci ratio: 1.373728e-01	ci left: 3.132549e-04	ci right 3.598553e-04	k: 813	n:2420000
COBL   2420000 perm   2833 sec   (854 perm/sec)   p_kst 3.359504e-04   p_cons 3.722190e-02   p_joint 2.528926e-04

Joint ci ratio: 1.577932e-01	ci left: 2.338742e-04	ci right 2.743283e-04	k: 616	n:2430000
Cons ci ratio: 1.278873e-02	ci left: 3.698701e-02	ci right 3.746347e-02	k: 90456	n:2430000
KS ci ratio: 1.370365e-01	ci left: 3.135553e-04	ci right 3.600769e-04	k: 817	n:2430000
COBL   2430000 perm   2854 sec   (852 perm/sec)   p_kst 3.362140e-04   p_cons 3.722469e-02   p_joint 2.534979e-04

Joint ci ratio: 1.574110e-01	ci left: 2.340968e-04	ci right 2.744819e-04	k: 619	n:2440000
Cons ci ratio: 1.276368e-02	ci left: 3.698086e-02	ci right 3.745630e-02	k: 90812	n:2440000
KS ci ratio: 1.367859e-01	ci left: 3.134577e-04	ci right 3.598728e-04	k: 820	n:2440000
COBL   2440000 perm   2875 sec   (849 perm/sec)   p_kst 3.360656e-04   p_cons 3.721803e-02   p_joint 2.536885e-04

Joint ci ratio: 1.574110e-01	ci left: 2.331413e-04	ci right 2.733616e-04	k: 619	n:2450000
Cons ci ratio: 1.273493e-02	ci left: 3.699633e-02	ci right 3.747089e-02	k: 91221	n:2450000
KS ci ratio: 1.367027e-01	ci left: 3.125725e-04	ci right 3.588261e-04	k: 821	n:2450000
COBL   2450000 perm   2896 sec   (846 perm/sec)   p_kst 3.351020e-04   p_cons 3.723306e-02   p_joint 2.526531e-04

Joint ci ratio: 1.571578e-01	ci left: 2.329745e-04	ci right 2.730954e-04	k: 621	n:2460000
Cons ci ratio: 1.271006e-02	ci left: 3.699100e-02	ci right 3.746456e-02	k: 91579	n:2460000
KS ci ratio: 1.362888e-01	ci left: 3.132650e-04	ci right 3.594693e-04	k: 826	n:2460000
COBL   2460000 perm   2917 sec   (843 perm/sec)   p_kst 3.357724e-04   p_cons 3.722724e-02   p_joint 2.524390e-04

Joint ci ratio: 1.567801e-01	ci left: 2.331982e-04	ci right 2.732519e-04	k: 624	n:2470000
Cons ci ratio: 1.268554e-02	ci left: 3.698451e-02	ci right 3.745706e-02	k: 91934	n:2470000
KS ci ratio: 1.362066e-01	ci left: 3.123877e-04	ci right 3.584326e-04	k: 827	n:2470000
COBL   2470000 perm   2938 sec   (841 perm/sec)   p_kst 3.348178e-04   p_cons 3.722024e-02   p_joint 2.526316e-04

Joint ci ratio: 1.815734e-01	ci left: 1.708444e-04	ci right 2.053404e-04	k: 465	n:2480000
Cons ci ratio: 1.265725e-02	ci left: 3.700018e-02	ci right 3.747187e-02	k: 92344	n:2480000
KS ci ratio: 1.360424e-01	ci left: 3.119071e-04	ci right 3.578212e-04	k: 829	n:2480000
COBL   2480000 perm   2959 sec   (838 perm/sec)   p_kst 3.342742e-04   p_cons 3.723548e-02   p_joint 1.875000e-04

Joint ci ratio: 1.914884e-01	ci left: 1.521633e-04	ci right 1.847607e-04	k: 418	n:2490000
Cons ci ratio: 1.263254e-02	ci left: 3.699650e-02	ci right 3.746722e-02	k: 92706	n:2490000
KS ci ratio: 1.353913e-01	ci left: 3.137582e-04	ci right 3.597061e-04	k: 837	n:2490000
COBL   2490000 perm   2981 sec   (835 perm/sec)   p_kst 3.361446e-04   p_cons 3.723133e-02   p_joint 1.678715e-04

Joint ci ratio: 1.910330e-01	ci left: 1.523164e-04	ci right 1.848599e-04	k: 420	n:2500000
Cons ci ratio: 1.260861e-02	ci left: 3.698927e-02	ci right 3.745900e-02	k: 93059	n:2500000
KS ci ratio: 1.353107e-01	ci left: 3.128896e-04	ci right 3.586808e-04	k: 838	n:2500000
COBL   2500000 perm   3002 sec   (833 perm/sec)   p_kst 3.352000e-04   p_cons 3.722360e-02   p_joint 1.680000e-04

Joint ci ratio: 1.910330e-01	ci left: 1.517095e-04	ci right 1.841234e-04	k: 420	n:2510000
Cons ci ratio: 1.258432e-02	ci left: 3.698488e-02	ci right 3.745364e-02	k: 93419	n:2510000
KS ci ratio: 1.353108e-01	ci left: 3.116431e-04	ci right 3.572518e-04	k: 838	n:2510000
COBL   2510000 perm   3023 sec   (830 perm/sec)   p_kst 3.338645e-04   p_cons 3.721873e-02   p_joint 1.673307e-04

Joint ci ratio: 1.910331e-01	ci left: 1.511075e-04	ci right 1.833928e-04	k: 420	n:2520000
Cons ci ratio: 1.255878e-02	ci left: 3.698843e-02	ci right 3.745628e-02	k: 93799	n:2520000
KS ci ratio: 1.353109e-01	ci left: 3.104064e-04	ci right 3.558341e-04	k: 838	n:2520000
COBL   2520000 perm   3045 sec   (828 perm/sec)   p_kst 3.325397e-04   p_cons 3.722183e-02   p_joint 1.666667e-04

Joint ci ratio: 1.910332e-01	ci left: 1.505103e-04	ci right 1.826679e-04	k: 420	n:2530000
Cons ci ratio: 1.253340e-02	ci left: 3.699196e-02	ci right 3.745890e-02	k: 94179	n:2530000
KS ci ratio: 1.350696e-01	ci left: 3.103251e-04	ci right 3.556535e-04	k: 841	n:2530000
COBL   2530000 perm   3067 sec   (825 perm/sec)   p_kst 3.324111e-04   p_cons 3.722490e-02   p_joint 1.660079e-04

Joint ci ratio: 1.908067e-01	ci left: 1.502926e-04	ci right 1.823613e-04	k: 421	n:2540000
Cons ci ratio: 1.250893e-02	ci left: 3.699114e-02	ci right 3.745716e-02	k: 94548	n:2540000
KS ci ratio: 1.349895e-01	ci left: 3.094838e-04	ci right 3.546603e-04	k: 842	n:2540000
COBL   2540000 perm   3088 sec   (823 perm/sec)   p_kst 3.314961e-04   p_cons 3.722362e-02   p_joint 1.657480e-04

Joint ci ratio: 2.002876e-01	ci left: 1.351573e-04	ci right 1.656047e-04	k: 382	n:2550000
Cons ci ratio: 1.248412e-02	ci left: 3.699307e-02	ci right 3.745818e-02	k: 94924	n:2550000
KS ci ratio: 1.347500e-01	ci left: 3.094069e-04	ci right 3.544856e-04	k: 845	n:2550000
COBL   2550000 perm   3110 sec   (820 perm/sec)   p_kst 3.313725e-04   p_cons 3.722510e-02   p_joint 1.498039e-04

Joint ci ratio: 1.997666e-01	ci left: 1.353715e-04	ci right 1.657782e-04	k: 384	n:2560000
Cons ci ratio: 1.245810e-02	ci left: 3.700277e-02	ci right 3.746703e-02	k: 95320	n:2560000
KS ci ratio: 1.345910e-01	ci left: 3.089532e-04	ci right 3.539085e-04	k: 847	n:2560000
COBL   2560000 perm   3132 sec   (817 perm/sec)   p_kst 3.308594e-04   p_cons 3.723438e-02   p_joint 1.500000e-04

Joint ci ratio: 1.987368e-01	ci left: 1.363235e-04	ci right 1.667671e-04	k: 388	n:2570000
Cons ci ratio: 1.243393e-02	ci left: 3.700270e-02	ci right 3.746605e-02	k: 95691	n:2570000
KS ci ratio: 1.341173e-01	ci left: 3.100072e-04	ci right 3.549445e-04	k: 853	n:2570000
COBL   2570000 perm   3154 sec   (815 perm/sec)   p_kst 3.319066e-04   p_cons 3.723385e-02   p_joint 1.509728e-04

Joint ci ratio: 1.982279e-01	ci left: 1.365318e-04	ci right 1.669344e-04	k: 390	n:2580000
Cons ci ratio: 1.240809e-02	ci left: 3.701306e-02	ci right 3.747557e-02	k: 96089	n:2580000
KS ci ratio: 1.339606e-01	ci left: 3.095548e-04	ci right 3.543699e-04	k: 855	n:2580000
COBL   2580000 perm   3176 sec   (812 perm/sec)   p_kst 3.313953e-04   p_cons 3.724380e-02   p_joint 1.511628e-04

Joint ci ratio: 1.979749e-01	ci left: 1.363716e-04	ci right 1.666951e-04	k: 391	n:2590000
Cons ci ratio: 1.238408e-02	ci left: 3.701373e-02	ci right 3.747534e-02	k: 96462	n:2590000
KS ci ratio: 1.337265e-01	ci left: 3.094791e-04	ci right 3.541987e-04	k: 858	n:2590000
COBL   2590000 perm   3198 sec   (810 perm/sec)   p_kst 3.312741e-04   p_cons 3.724402e-02   p_joint 1.509653e-04

Joint ci ratio: 1.977229e-01	ci left: 1.362126e-04	ci right 1.664576e-04	k: 392	n:2600000
Cons ci ratio: 1.235927e-02	ci left: 3.701975e-02	ci right 3.748051e-02	k: 96849	n:2600000
KS ci ratio: 1.334936e-01	ci left: 3.094041e-04	ci right 3.540288e-04	k: 861	n:2600000
COBL   2600000 perm   3220 sec   (808 perm/sec)   p_kst 3.311538e-04   p_cons 3.724962e-02   p_joint 1.507692e-04

Joint ci ratio: 1.974718e-01	ci left: 1.360549e-04	ci right 1.662219e-04	k: 393	n:2610000
Cons ci ratio: 1.233653e-02	ci left: 3.701465e-02	ci right 3.747450e-02	k: 97207	n:2610000
KS ci ratio: 1.331080e-01	ci left: 3.100705e-04	ci right 3.546519e-04	k: 866	n:2610000
COBL   2610000 perm   3242 sec   (805 perm/sec)   p_kst 3.318008e-04   p_cons 3.724406e-02   p_joint 1.505747e-04

Joint ci ratio: 1.969725e-01	ci left: 1.362613e-04	ci right 1.663884e-04	k: 395	n:2620000
Cons ci ratio: 1.231267e-02	ci left: 3.701683e-02	ci right 3.747580e-02	k: 97584	n:2620000
KS ci ratio: 1.330314e-01	ci left: 3.092560e-04	ci right 3.536927e-04	k: 867	n:2620000
COBL   2620000 perm   3265 sec   (803 perm/sec)   p_kst 3.309160e-04   p_cons 3.724580e-02   p_joint 1.507634e-04

Joint ci ratio: 1.967243e-01	ci left: 1.361047e-04	ci right 1.661547e-04	k: 396	n:2630000
Cons ci ratio: 1.228894e-02	ci left: 3.701898e-02	ci right 3.747709e-02	k: 97961	n:2630000
KS ci ratio: 1.326499e-01	ci left: 3.099181e-04	ci right 3.543121e-04	k: 872	n:2630000
COBL   2630000 perm   3287 sec   (800 perm/sec)   p_kst 3.315589e-04   p_cons 3.724753e-02   p_joint 1.505703e-04

Joint ci ratio: 1.967243e-01	ci left: 1.355891e-04	ci right 1.655254e-04	k: 396	n:2640000
Cons ci ratio: 1.226399e-02	ci left: 3.702906e-02	ci right 3.748635e-02	k: 98359	n:2640000
KS ci ratio: 1.321211e-01	ci left: 3.113079e-04	ci right 3.557093e-04	k: 879	n:2640000
COBL   2640000 perm   3310 sec   (798 perm/sec)   p_kst 3.329545e-04   p_cons 3.725720e-02   p_joint 1.500000e-04

Joint ci ratio: 1.959852e-01	ci left: 1.361539e-04	ci right 1.660884e-04	k: 399	n:2650000
Cons ci ratio: 1.223893e-02	ci left: 3.704056e-02	ci right 3.749706e-02	k: 98761	n:2650000
KS ci ratio: 1.316729e-01	ci left: 3.123226e-04	ci right 3.567058e-04	k: 885	n:2650000
COBL   2650000 perm   3333 sec   (795 perm/sec)   p_kst 3.339623e-04   p_cons 3.726830e-02   p_joint 1.505660e-04

Joint ci ratio: 1.959852e-01	ci left: 1.356421e-04	ci right 1.654640e-04	k: 399	n:2660000
Cons ci ratio: 1.221442e-02	ci left: 3.704973e-02	ci right 3.750542e-02	k: 99157	n:2660000
KS ci ratio: 1.312293e-01	ci left: 3.133299e-04	ci right 3.576946e-04	k: 891	n:2660000
COBL   2660000 perm   3356 sec   (793 perm/sec)   p_kst 3.349624e-04   p_cons 3.727707e-02   p_joint 1.500000e-04

Joint ci ratio: 1.957407e-01	ci left: 1.354902e-04	ci right 1.652372e-04	k: 400	n:2670000
Cons ci ratio: 1.219023e-02	ci left: 3.705771e-02	ci right 3.751259e-02	k: 99550	n:2670000
KS ci ratio: 1.310824e-01	ci left: 3.128809e-04	ci right 3.571285e-04	k: 893	n:2670000
COBL   2670000 perm   3379 sec   (790 perm/sec)   p_kst 3.344569e-04   p_cons 3.728464e-02   p_joint 1.498127e-04

Joint ci ratio: 1.950126e-01	ci left: 1.360493e-04	ci right 1.657947e-04	k: 403	n:2680000
Cons ci ratio: 1.216752e-02	ci left: 3.705782e-02	ci right 3.751184e-02	k: 99922	n:2680000
KS ci ratio: 1.308631e-01	ci left: 3.127961e-04	ci right 3.569520e-04	k: 896	n:2680000
COBL   2680000 perm   3402 sec   (788 perm/sec)   p_kst 3.343284e-04   p_cons 3.728433e-02   p_joint 1.503731e-04

Joint ci ratio: 1.947717e-01	ci left: 1.358971e-04	ci right 1.655682e-04	k: 404	n:2690000
Cons ci ratio: 1.214318e-02	ci left: 3.706830e-02	ci right 3.752154e-02	k: 100322	n:2690000
KS ci ratio: 1.307174e-01	ci left: 3.123525e-04	ci right 3.563929e-04	k: 898	n:2690000
COBL   2690000 perm   3425 sec   (785 perm/sec)   p_kst 3.338290e-04   p_cons 3.729442e-02   p_joint 1.501859e-04

Joint ci ratio: 1.942925e-01	ci left: 1.360985e-04	ci right 1.657318e-04	k: 406	n:2700000
Cons ci ratio: 1.211811e-02	ci left: 3.708388e-02	ci right 3.753637e-02	k: 100736	n:2700000
KS ci ratio: 1.304999e-01	ci left: 3.122704e-04	ci right 3.562203e-04	k: 901	n:2700000
COBL   2700000 perm   3448 sec   (783 perm/sec)   p_kst 3.337037e-04   p_cons 3.730963e-02   p_joint 1.503704e-04

Joint ci ratio: 1.935803e-01	ci left: 1.366495e-04	ci right 1.662809e-04	k: 409	n:2710000
Cons ci ratio: 1.209629e-02	ci left: 3.708095e-02	ci right 3.753258e-02	k: 101100	n:2710000
KS ci ratio: 1.300679e-01	ci left: 3.132600e-04	ci right 3.571919e-04	k: 907	n:2710000
COBL   2710000 perm   3472 sec   (781 perm/sec)   p_kst 3.346863e-04   p_cons 3.730627e-02   p_joint 1.509225e-04

Joint ci ratio: 1.928759e-01	ci left: 1.371967e-04	ci right 1.668258e-04	k: 412	n:2720000
Cons ci ratio: 1.207219e-02	ci left: 3.709234e-02	ci right 3.754320e-02	k: 101503	n:2720000
KS ci ratio: 1.299250e-01	ci left: 3.128197e-04	ci right 3.566379e-04	k: 909	n:2720000
COBL   2720000 perm   3495 sec   (778 perm/sec)   p_kst 3.341912e-04   p_cons 3.731728e-02   p_joint 1.514706e-04

Joint ci ratio: 1.926428e-01	ci left: 1.370428e-04	ci right 1.665987e-04	k: 413	n:2730000
Cons ci ratio: 1.205019e-02	ci left: 3.709196e-02	ci right 3.754199e-02	k: 101874	n:2730000
KS ci ratio: 1.298537e-01	ci left: 3.120282e-04	ci right 3.557098e-04	k: 910	n:2730000
COBL   2730000 perm   3518 sec   (776 perm/sec)   p_kst 3.333333e-04   p_cons 3.731648e-02   p_joint 1.512821e-04

Joint ci ratio: 1.921792e-01	ci left: 1.372374e-04	ci right 1.667557e-04	k: 415	n:2740000
Cons ci ratio: 1.202495e-02	ci left: 3.711160e-02	ci right 3.756092e-02	k: 102300	n:2740000
KS ci ratio: 1.297114e-01	ci left: 3.115956e-04	ci right 3.551652e-04	k: 912	n:2740000
COBL   2740000 perm   3542 sec   (774 perm/sec)   p_kst 3.328467e-04   p_cons 3.733577e-02   p_joint 1.514599e-04

Joint ci ratio: 1.919486e-01	ci left: 1.370845e-04	ci right 1.665304e-04	k: 416	n:2750000
Cons ci ratio: 1.200449e-02	ci left: 3.710353e-02	ci right 3.755199e-02	k: 102650	n:2750000
KS ci ratio: 1.292872e-01	ci left: 3.125737e-04	ci right 3.561261e-04	k: 918	n:2750000
COBL   2750000 perm   3565 sec   (771 perm/sec)   p_kst 3.338182e-04   p_cons 3.732727e-02   p_joint 1.512727e-04

Joint ci ratio: 1.917189e-01	ci left: 1.369328e-04	ci right 1.663068e-04	k: 417	n:2760000
Cons ci ratio: 1.198232e-02	ci left: 3.710637e-02	ci right 3.755402e-02	k: 103030	n:2760000
KS ci ratio: 1.290767e-01	ci left: 3.124930e-04	ci right 3.559579e-04	k: 921	n:2760000
COBL   2760000 perm   3589 sec   (769 perm/sec)   p_kst 3.336957e-04   p_cons 3.732971e-02   p_joint 1.510870e-04

Joint ci ratio: 1.908080e-01	ci left: 1.378133e-04	ci right 1.672195e-04	k: 421	n:2770000
Cons ci ratio: 1.196038e-02	ci left: 3.710847e-02	ci right 3.755532e-02	k: 103408	n:2770000
KS ci ratio: 1.288673e-01	ci left: 3.124130e-04	ci right 3.557908e-04	k: 924	n:2770000
COBL   2770000 perm   3612 sec   (767 perm/sec)   p_kst 3.335740e-04   p_cons 3.733141e-02   p_joint 1.519856e-04

Joint ci ratio: 1.905824e-01	ci left: 1.376601e-04	ci right 1.669948e-04	k: 422	n:2780000
Cons ci ratio: 1.193822e-02	ci left: 3.711270e-02	ci right 3.755877e-02	k: 103792	n:2780000
KS ci ratio: 1.287977e-01	ci left: 3.116373e-04	ci right 3.548823e-04	k: 925	n:2780000
COBL   2780000 perm   3637 sec   (764 perm/sec)   p_kst 3.327338e-04   p_cons 3.733525e-02   p_joint 1.517986e-04

Joint ci ratio: 1.901334e-01	ci left: 1.378494e-04	ci right 1.671472e-04	k: 424	n:2790000
Cons ci ratio: 1.191647e-02	ci left: 3.711512e-02	ci right 3.756040e-02	k: 104171	n:2790000
KS ci ratio: 1.285204e-01	ci left: 3.119079e-04	ci right 3.550901e-04	k: 929	n:2790000
COBL   2790000 perm   3660 sec   (762 perm/sec)   p_kst 3.329749e-04   p_cons 3.733728e-02   p_joint 1.519713e-04

Joint ci ratio: 1.894658e-01	ci left: 1.383776e-04	ci right 1.676726e-04	k: 427	n:2800000
Cons ci ratio: 1.189484e-02	ci left: 3.711752e-02	ci right 3.756201e-02	k: 104550	n:2800000
KS ci ratio: 1.282449e-01	ci left: 3.121766e-04	ci right 3.552963e-04	k: 933	n:2800000
COBL   2800000 perm   3684 sec   (760 perm/sec)   p_kst 3.332143e-04   p_cons 3.733929e-02   p_joint 1.525000e-04

Joint ci ratio: 1.888052e-01	ci left: 1.389022e-04	ci right 1.681940e-04	k: 430	n:2810000
Cons ci ratio: 1.187262e-02	ci left: 3.712416e-02	ci right 3.756790e-02	k: 104941	n:2810000
KS ci ratio: 1.281078e-01	ci left: 3.117546e-04	ci right 3.547665e-04	k: 935	n:2810000
COBL   2810000 perm   3708 sec   (758 perm/sec)   p_kst 3.327402e-04   p_cons 3.734555e-02   p_joint 1.530249e-04

Joint ci ratio: 1.881515e-01	ci left: 1.394233e-04	ci right 1.687115e-04	k: 433	n:2820000
Cons ci ratio: 1.185157e-02	ci left: 3.712439e-02	ci right 3.756734e-02	k: 105314	n:2820000
KS ci ratio: 1.277670e-01	ci left: 3.123654e-04	ci right 3.553382e-04	k: 940	n:2820000
COBL   2820000 perm   3732 sec   (756 perm/sec)   p_kst 3.333333e-04   p_cons 3.734539e-02   p_joint 1.535461e-04

Joint ci ratio: 1.879351e-01	ci left: 1.392674e-04	ci right 1.684853e-04	k: 434	n:2830000
Cons ci ratio: 1.183344e-02	ci left: 3.710771e-02	ci right 3.754978e-02	k: 105639	n:2830000
KS ci ratio: 1.276315e-01	ci left: 3.119458e-04	ci right 3.548119e-04	k: 942	n:2830000
COBL   2830000 perm   3756 sec   (753 perm/sec)   p_kst 3.328622e-04   p_cons 3.732827e-02   p_joint 1.533569e-04

Joint ci ratio: 1.877195e-01	ci left: 1.391126e-04	ci right 1.682607e-04	k: 435	n:2840000
Cons ci ratio: 1.181393e-02	ci left: 3.709992e-02	ci right 3.754116e-02	k: 105989	n:2840000
KS ci ratio: 1.272273e-01	ci left: 3.128927e-04	ci right 3.557425e-04	k: 948	n:2840000
COBL   2840000 perm   3780 sec   (751 perm/sec)   p_kst 3.338028e-04   p_cons 3.732007e-02   p_joint 1.531690e-04

Joint ci ratio: 2.244465e-01	ci left: 9.501234e-05	ci right 1.193559e-04	k: 304	n:2850000
Cons ci ratio: 1.179326e-02	ci left: 3.709989e-02	ci right 3.754035e-02	k: 106361	n:2850000
KS ci ratio: 1.269600e-01	ci left: 3.131537e-04	ci right 3.559424e-04	k: 952	n:2850000
COBL   2850000 perm   3804 sec   (749 perm/sec)   p_kst 3.340351e-04   p_cons 3.731965e-02   p_joint 1.066667e-04

Joint ci ratio: 2.244465e-01	ci left: 9.468013e-05	ci right 1.189385e-04	k: 304	n:2860000
Cons ci ratio: 1.177361e-02	ci left: 3.709427e-02	ci right 3.753394e-02	k: 106717	n:2860000
KS ci ratio: 1.267606e-01	ci left: 3.130744e-04	ci right 3.557801e-04	k: 955	n:2860000
COBL   2860000 perm   3829 sec   (747 perm/sec)   p_kst 3.339161e-04   p_cons 3.731364e-02   p_joint 1.062937e-04

Joint ci ratio: 2.240795e-01	ci left: 9.467909e-05	ci right 1.188921e-04	k: 305	n:2870000
Cons ci ratio: 1.175303e-02	ci left: 3.709496e-02	ci right 3.753385e-02	k: 107091	n:2870000
KS ci ratio: 1.264304e-01	ci left: 3.136706e-04	ci right 3.563377e-04	k: 960	n:2870000
COBL   2870000 perm   3853 sec   (745 perm/sec)   p_kst 3.344948e-04   p_cons 3.731394e-02   p_joint 1.062718e-04

Joint ci ratio: 2.237143e-01	ci left: 9.467810e-05	ci right 1.188459e-04	k: 306	n:2880000
Cons ci ratio: 1.173227e-02	ci left: 3.709737e-02	ci right 3.753551e-02	k: 107470	n:2880000
KS ci ratio: 1.262335e-01	ci left: 3.135902e-04	ci right 3.561750e-04	k: 963	n:2880000
COBL   2880000 perm   3877 sec   (743 perm/sec)   p_kst 3.343750e-04   p_cons 3.731597e-02   p_joint 1.062500e-04

Joint ci ratio: 2.233508e-01	ci left: 9.467714e-05	ci right 1.188001e-04	k: 307	n:2890000
Cons ci ratio: 1.171451e-02	ci left: 3.708216e-02	ci right 3.751946e-02	k: 107798	n:2890000
KS ci ratio: 1.260376e-01	ci left: 3.135104e-04	ci right 3.560134e-04	k: 966	n:2890000
COBL   2890000 perm   3902 sec   (741 perm/sec)   p_kst 3.342561e-04   p_cons 3.730035e-02   p_joint 1.062284e-04

Joint ci ratio: 2.229891e-01	ci left: 9.467622e-05	ci right 1.187545e-04	k: 308	n:2900000
Cons ci ratio: 1.169519e-02	ci left: 3.707704e-02	ci right 3.751354e-02	k: 108155	n:2900000
KS ci ratio: 1.255838e-01	ci left: 3.147672e-04	ci right 3.572754e-04	k: 973	n:2900000
COBL   2900000 perm   3926 sec   (739 perm/sec)   p_kst 3.355172e-04   p_cons 3.729483e-02   p_joint 1.062069e-04

Joint ci ratio: 2.222709e-01	ci left: 9.499983e-05	ci right 1.190719e-04	k: 310	n:2910000
Cons ci ratio: 1.167569e-02	ci left: 3.707366e-02	ci right 3.750939e-02	k: 108517	n:2910000
KS ci ratio: 1.253908e-01	ci left: 3.146841e-04	ci right 3.571110e-04	k: 976	n:2910000
COBL   2910000 perm   3951 sec   (737 perm/sec)   p_kst 3.353952e-04   p_cons 3.729107e-02   p_joint 1.065292e-04

Joint ci ratio: 2.219144e-01	ci left: 9.499791e-05	ci right 1.190256e-04	k: 311	n:2920000
Cons ci ratio: 1.165768e-02	ci left: 3.706177e-02	ci right 3.749669e-02	k: 108854	n:2920000
KS ci ratio: 1.252627e-01	ci left: 3.142699e-04	ci right 3.565944e-04	k: 978	n:2920000
COBL   2920000 perm   3976 sec   (734 perm/sec)   p_kst 3.349315e-04   p_cons 3.727877e-02   p_joint 1.065068e-04

Joint ci ratio: 2.219144e-01	ci left: 9.467368e-05	ci right 1.186194e-04	k: 311	n:2930000
Cons ci ratio: 1.163930e-02	ci left: 3.705268e-02	ci right 3.748680e-02	k: 109199	n:2930000
KS ci ratio: 1.251350e-01	ci left: 3.138585e-04	ci right 3.560813e-04	k: 980	n:2930000
COBL   2930000 perm   4002 sec   (732 perm/sec)   p_kst 3.344710e-04   p_cons 3.726928e-02   p_joint 1.061433e-04

Joint ci ratio: 2.215597e-01	ci left: 9.467291e-05	ci right 1.185750e-04	k: 312	n:2940000
Cons ci ratio: 1.161738e-02	ci left: 3.706604e-02	ci right 3.749950e-02	k: 109610	n:2940000
KS ci ratio: 1.250077e-01	ci left: 3.134499e-04	ci right 3.555717e-04	k: 982	n:2940000
COBL   2940000 perm   4027 sec   (730 perm/sec)   p_kst 3.340136e-04   p_cons 3.728231e-02   p_joint 1.061224e-04

Joint ci ratio: 2.215597e-01	ci left: 9.435198e-05	ci right 1.181730e-04	k: 312	n:2950000
Cons ci ratio: 1.159695e-02	ci left: 3.707086e-02	ci right 3.750361e-02	k: 109996	n:2950000
KS ci ratio: 1.247541e-01	ci left: 3.137009e-04	ci right 3.557646e-04	k: 986	n:2950000
COBL   2950000 perm   4053 sec   (728 perm/sec)   p_kst 3.342373e-04   p_cons 3.728678e-02   p_joint 1.057627e-04

Joint ci ratio: 2.215597e-01	ci left: 9.403322e-05	ci right 1.177738e-04	k: 312	n:2960000
Cons ci ratio: 1.157821e-02	ci left: 3.706588e-02	ci right 3.749786e-02	k: 110353	n:2960000
KS ci ratio: 1.245649e-01	ci left: 3.136231e-04	ci right 3.556078e-04	k: 989	n:2960000
COBL   2960000 perm   4078 sec   (726 perm/sec)   p_kst 3.341216e-04   p_cons 3.728142e-02   p_joint 1.054054e-04

Joint ci ratio: 2.205055e-01	ci left: 9.467080e-05	ci right 1.184432e-04	k: 315	n:2970000
Cons ci ratio: 1.155745e-02	ci left: 3.707403e-02	ci right 3.750533e-02	k: 110749	n:2970000
KS ci ratio: 1.241268e-01	ci left: 3.148507e-04	ci right 3.568406e-04	k: 996	n:2970000
COBL   2970000 perm   4104 sec   (724 perm/sec)   p_kst 3.353535e-04   p_cons 3.728923e-02   p_joint 1.060606e-04

Joint ci ratio: 2.205055e-01	ci left: 9.435311e-05	ci right 1.180457e-04	k: 315	n:2980000
Cons ci ratio: 1.153868e-02	ci left: 3.707041e-02	ci right 3.750096e-02	k: 111110	n:2980000
KS ci ratio: 1.239405e-01	ci left: 3.147696e-04	ci right 3.566811e-04	k: 999	n:2980000
COBL   2980000 perm   4130 sec   (722 perm/sec)   p_kst 3.352349e-04   p_cons 3.728523e-02   p_joint 1.057047e-04

Joint ci ratio: 2.198110e-01	ci left: 9.466956e-05	ci right 1.183566e-04	k: 317	n:2990000
Cons ci ratio: 1.152033e-02	ci left: 3.706481e-02	ci right 3.749461e-02	k: 111465	n:2990000
KS ci ratio: 1.236317e-01	ci left: 3.153373e-04	ci right 3.572122e-04	k: 1004	n:2990000
COBL   2990000 perm   4155 sec   (720 perm/sec)   p_kst 3.357860e-04   p_cons 3.727926e-02   p_joint 1.060201e-04

Joint ci ratio: 2.194662e-01	ci left: 9.466899e-05	ci right 1.183137e-04	k: 318	n:3000000
Cons ci ratio: 1.150148e-02	ci left: 3.706291e-02	ci right 3.749198e-02	k: 111831	n:3000000
KS ci ratio: 1.235089e-01	ci left: 3.149323e-04	ci right 3.567088e-04	k: 1006	n:3000000
COBL   3000000 perm   4181 sec   (718 perm/sec)   p_kst 3.353333e-04   p_cons 3.727700e-02   p_joint 1.060000e-04

Joint ci ratio: 2.191230e-01	ci left: 9.466845e-05	ci right 1.182711e-04	k: 319	n:3010000
Cons ci ratio: 1.148266e-02	ci left: 3.706136e-02	ci right 3.748970e-02	k: 112198	n:3010000
KS ci ratio: 1.232643e-01	ci left: 3.151739e-04	ci right 3.568936e-04	k: 1010	n:3010000
COBL   3010000 perm   4207 sec   (715 perm/sec)   p_kst 3.355482e-04   p_cons 3.727508e-02   p_joint 1.059801e-04

Joint ci ratio: 2.184414e-01	ci left: 9.498095e-05	ci right 1.185780e-04	k: 321	n:3020000
Cons ci ratio: 1.146352e-02	ci left: 3.706245e-02	ci right 3.749009e-02	k: 112573	n:3020000
KS ci ratio: 1.230819e-01	ci left: 3.150930e-04	ci right 3.567358e-04	k: 1013	n:3020000
COBL   3020000 perm   4233 sec   (713 perm/sec)   p_kst 3.354305e-04   p_cons 3.727583e-02   p_joint 1.062914e-04

Joint ci ratio: 2.184414e-01	ci left: 9.466748e-05	ci right 1.181866e-04	k: 321	n:3030000
Cons ci ratio: 1.144620e-02	ci left: 3.705268e-02	ci right 3.747956e-02	k: 112915	n:3030000
KS ci ratio: 1.229607e-01	ci left: 3.146929e-04	ci right 3.562388e-04	k: 1015	n:3030000
COBL   3030000 perm   4259 sec   (711 perm/sec)   p_kst 3.349835e-04   p_cons 3.726568e-02   p_joint 1.059406e-04

Joint ci ratio: 2.181030e-01	ci left: 9.466704e-05	ci right 1.181448e-04	k: 322	n:3040000
Cons ci ratio: 1.142797e-02	ci left: 3.704921e-02	ci right 3.747536e-02	k: 113276	n:3040000
KS ci ratio: 1.227796e-01	ci left: 3.146142e-04	ci right 3.560841e-04	k: 1018	n:3040000
COBL   3040000 perm   4285 sec   (709 perm/sec)   p_kst 3.348684e-04   p_cons 3.726184e-02   p_joint 1.059211e-04

Joint ci ratio: 1.691456e-01	ci left: 1.611743e-04	ci right 1.912636e-04	k: 536	n:3050000
Cons ci ratio: 1.141030e-02	ci left: 3.704281e-02	ci right 3.746823e-02	k: 113628	n:3050000
KS ci ratio: 1.226593e-01	ci left: 3.142183e-04	ci right 3.555925e-04	k: 1020	n:3050000
COBL   3050000 perm   4310 sec   (708 perm/sec)   p_kst 3.344262e-04   p_cons 3.725508e-02   p_joint 1.757377e-04

Joint ci ratio: 1.689883e-01	ci left: 1.609605e-04	ci right 1.909791e-04	k: 537	n:3060000
Cons ci ratio: 1.139198e-02	ci left: 3.704103e-02	ci right 3.746573e-02	k: 113994	n:3060000
KS ci ratio: 1.225993e-01	ci left: 3.135082e-04	ci right 3.547673e-04	k: 1021	n:3060000
COBL   3060000 perm   4336 sec   (706 perm/sec)   p_kst 3.336601e-04   p_cons 3.725294e-02   p_joint 1.754902e-04

Joint ci ratio: 1.688315e-01	ci left: 1.607482e-04	ci right 1.906965e-04	k: 538	n:3070000
Cons ci ratio: 1.137318e-02	ci left: 3.704282e-02	ci right 3.746684e-02	k: 114371	n:3070000
KS ci ratio: 1.224198e-01	ci left: 3.134342e-04	ci right 3.546188e-04	k: 1024	n:3070000
COBL   3070000 perm   4361 sec   (704 perm/sec)   p_kst 3.335505e-04   p_cons 3.725440e-02   p_joint 1.752443e-04

Joint ci ratio: 1.686751e-01	ci left: 1.605372e-04	ci right 1.904158e-04	k: 539	n:3080000
Cons ci ratio: 1.135529e-02	ci left: 3.703943e-02	ci right 3.746274e-02	k: 114732	n:3080000
KS ci ratio: 1.222410e-01	ci left: 3.133608e-04	ci right 3.544713e-04	k: 1027	n:3080000
COBL   3080000 perm   4397 sec   (700 perm/sec)   p_kst 3.334416e-04   p_cons 3.725065e-02   p_joint 1.750000e-04

Joint ci ratio: 1.685192e-01	ci left: 1.603277e-04	ci right 1.901368e-04	k: 540	n:3090000
Cons ci ratio: 1.133673e-02	ci left: 3.704090e-02	ci right 3.746353e-02	k: 115108	n:3090000
KS ci ratio: 1.220630e-01	ci left: 3.132879e-04	ci right 3.543246e-04	k: 1030	n:3090000
COBL   3090000 perm   4425 sec   (698 perm/sec)   p_kst 3.333333e-04   p_cons 3.725178e-02   p_joint 1.747573e-04

Joint ci ratio: 1.677457e-01	ci left: 1.613555e-04	ci right 1.912042e-04	k: 545	n:3100000
Cons ci ratio: 1.131698e-02	ci left: 3.705040e-02	ci right 3.747240e-02	k: 115509	n:3100000
KS ci ratio: 1.217681e-01	ci left: 3.138410e-04	ci right 3.548437e-04	k: 1035	n:3100000
COBL   3100000 perm   4451 sec   (696 perm/sec)   p_kst 3.338710e-04   p_cons 3.726097e-02   p_joint 1.758065e-04

Joint ci ratio: 1.669828e-01	ci left: 1.623771e-04	ci right 1.922643e-04	k: 550	n:3110000
Cons ci ratio: 1.129971e-02	ci left: 3.704477e-02	ci right 3.746606e-02	k: 115863	n:3110000
KS ci ratio: 1.215337e-01	ci left: 3.140789e-04	ci right 3.550280e-04	k: 1039	n:3110000
COBL   3110000 perm   4478 sec   (695 perm/sec)   p_kst 3.340836e-04   p_cons 3.725498e-02   p_joint 1.768489e-04

Joint ci ratio: 1.669828e-01	ci left: 1.618566e-04	ci right 1.916481e-04	k: 550	n:3120000
Cons ci ratio: 1.128136e-02	ci left: 3.704653e-02	ci right 3.746715e-02	k: 116240	n:3120000
KS ci ratio: 1.212426e-01	ci left: 3.146262e-04	ci right 3.555413e-04	k: 1044	n:3120000
COBL   3120000 perm   4505 sec   (693 perm/sec)   p_kst 3.346154e-04   p_cons 3.725641e-02   p_joint 1.762821e-04

Joint ci ratio: 2.514583e-01	ci left: 6.788147e-05	ci right 8.769560e-05	k: 242	n:3130000
Cons ci ratio: 1.126481e-02	ci left: 3.703745e-02	ci right 3.745734e-02	k: 116583	n:3130000
KS ci ratio: 1.208384e-01	ci left: 3.157897e-04	ci right 3.567095e-04	k: 1051	n:3130000
COBL   3130000 perm   4531 sec   (691 perm/sec)   p_kst 3.357827e-04   p_cons 3.724696e-02   p_joint 7.731629e-05

Joint ci ratio: 2.514583e-01	ci left: 6.766529e-05	ci right 8.741632e-05	k: 242	n:3140000
Cons ci ratio: 1.124813e-02	ci left: 3.702969e-02	ci right 3.744887e-02	k: 116930	n:3140000
KS ci ratio: 1.206665e-01	ci left: 3.157106e-04	ci right 3.565577e-04	k: 1054	n:3140000
COBL   3140000 perm   4557 sec   (689 perm/sec)   p_kst 3.356688e-04   p_cons 3.723885e-02   p_joint 7.707006e-05

Joint ci ratio: 1.660810e-01	ci left: 1.621405e-04	ci right 1.918070e-04	k: 556	n:3150000
Cons ci ratio: 1.122919e-02	ci left: 3.703686e-02	ci right 3.745542e-02	k: 117324	n:3150000
KS ci ratio: 1.204384e-01	ci left: 3.159399e-04	ci right 3.567339e-04	k: 1058	n:3150000
COBL   3150000 perm   4584 sec   (687 perm/sec)   p_kst 3.358730e-04   p_cons 3.724571e-02   p_joint 1.765079e-04

Joint ci ratio: 1.656355e-01	ci left: 1.625374e-04	ci right 1.921887e-04	k: 559	n:3160000
Cons ci ratio: 1.121168e-02	ci left: 3.703547e-02	ci right 3.745335e-02	k: 117691	n:3160000
KS ci ratio: 1.202682e-01	ci left: 3.158608e-04	ci right 3.565829e-04	k: 1061	n:3160000
COBL   3160000 perm   4611 sec   (685 perm/sec)   p_kst 3.357595e-04   p_cons 3.724399e-02   p_joint 1.768987e-04

Joint ci ratio: 1.656356e-01	ci left: 1.620246e-04	ci right 1.915824e-04	k: 559	n:3170000
Cons ci ratio: 1.119504e-02	ci left: 3.702906e-02	ci right 3.744624e-02	k: 118042	n:3170000
KS ci ratio: 1.201551e-01	ci left: 3.154764e-04	ci right 3.561079e-04	k: 1063	n:3170000
COBL   3170000 perm   4638 sec   (683 perm/sec)   p_kst 3.353312e-04   p_cons 3.723722e-02   p_joint 1.763407e-04

Joint ci ratio: 1.654879e-01	ci left: 1.618166e-04	ci right 1.913075e-04	k: 560	n:3180000
Cons ci ratio: 1.117690e-02	ci left: 3.703272e-02	ci right 3.744926e-02	k: 118425	n:3180000
KS ci ratio: 1.200424e-01	ci left: 3.150943e-04	ci right 3.556359e-04	k: 1065	n:3180000
COBL   3180000 perm   4665 sec   (682 perm/sec)   p_kst 3.349057e-04   p_cons 3.724057e-02   p_joint 1.761006e-04

Joint ci ratio: 1.650472e-01	ci left: 1.622108e-04	ci right 1.916871e-04	k: 563	n:3190000
Cons ci ratio: 1.116007e-02	ci left: 3.702854e-02	ci right 3.744440e-02	k: 118783	n:3190000
KS ci ratio: 1.197618e-01	ci left: 3.156270e-04	ci right 3.561355e-04	k: 1070	n:3190000
COBL   3190000 perm   4692 sec   (680 perm/sec)   p_kst 3.354232e-04   p_cons 3.723605e-02   p_joint 1.764890e-04

Joint ci ratio: 1.649011e-01	ci left: 1.620035e-04	ci right 1.914134e-04	k: 564	n:3200000
Cons ci ratio: 1.114210e-02	ci left: 3.703218e-02	ci right 3.744741e-02	k: 119166	n:3200000
KS ci ratio: 1.195388e-01	ci left: 3.158532e-04	ci right 3.563099e-04	k: 1074	n:3200000
COBL   3200000 perm   4719 sec   (678 perm/sec)   p_kst 3.356250e-04   p_cons 3.723937e-02   p_joint 1.762500e-04

Joint ci ratio: 1.646100e-01	ci left: 1.620962e-04	ci right 1.914658e-04	k: 566	n:3210000
Cons ci ratio: 1.112557e-02	ci left: 3.702710e-02	ci right 3.744165e-02	k: 119521	n:3210000
KS ci ratio: 1.190964e-01	ci left: 3.172871e-04	ci right 3.577665e-04	k: 1082	n:3210000
COBL   3210000 perm   4747 sec   (676 perm/sec)   p_kst 3.370717e-04   p_cons 3.723396e-02   p_joint 1.763240e-04

Joint ci ratio: 1.644650e-01	ci left: 1.618906e-04	ci right 1.911946e-04	k: 567	n:3220000
Cons ci ratio: 1.110811e-02	ci left: 3.702855e-02	ci right 3.744247e-02	k: 119897	n:3220000
KS ci ratio: 1.189866e-01	ci left: 3.169044e-04	ci right 3.572950e-04	k: 1084	n:3220000
COBL   3220000 perm   4774 sec   (675 perm/sec)   p_kst 3.366460e-04   p_cons 3.723509e-02   p_joint 1.760870e-04

Joint ci ratio: 1.641762e-01	ci left: 1.619831e-04	ci right 1.912473e-04	k: 569	n:3230000
Cons ci ratio: 1.109259e-02	ci left: 3.701796e-02	ci right 3.743117e-02	k: 120234	n:3230000
KS ci ratio: 1.187133e-01	ci left: 3.174252e-04	ci right 3.577828e-04	k: 1089	n:3230000
COBL   3230000 perm   4800 sec   (673 perm/sec)   p_kst 3.371517e-04   p_cons 3.722415e-02   p_joint 1.761610e-04

Joint ci ratio: 1.638889e-01	ci left: 1.620751e-04	ci right 1.912996e-04	k: 571	n:3240000
Cons ci ratio: 1.107690e-02	ci left: 3.700896e-02	ci right 3.742149e-02	k: 120576	n:3240000
KS ci ratio: 1.184961e-01	ci left: 3.176435e-04	ci right 3.579497e-04	k: 1093	n:3240000
COBL   3240000 perm   4828 sec   (671 perm/sec)   p_kst 3.373457e-04   p_cons 3.721481e-02   p_joint 1.762346e-04

Joint ci ratio: 1.633188e-01	ci left: 1.627568e-04	ci right 1.919921e-04	k: 575	n:3250000
Cons ci ratio: 1.105967e-02	ci left: 3.701046e-02	ci right 3.742236e-02	k: 120952	n:3250000
KS ci ratio: 1.181724e-01	ci left: 3.184576e-04	ci right 3.587491e-04	k: 1099	n:3250000
COBL   3250000 perm   4855 sec   (669 perm/sec)   p_kst 3.381538e-04   p_cons 3.721600e-02   p_joint 1.769231e-04

Joint ci ratio: 1.630360e-01	ci left: 1.628460e-04	ci right 1.920417e-04	k: 577	n:3260000
Cons ci ratio: 1.104171e-02	ci left: 3.701715e-02	ci right 3.742845e-02	k: 121345	n:3260000
KS ci ratio: 1.180652e-01	ci left: 3.180761e-04	ci right 3.582803e-04	k: 1101	n:3260000
COBL   3260000 perm   4883 sec   (668 perm/sec)   p_kst 3.377301e-04   p_cons 3.722239e-02   p_joint 1.769939e-04

Joint ci ratio: 1.627547e-01	ci left: 1.629347e-04	ci right 1.920909e-04	k: 579	n:3270000
Cons ci ratio: 1.102487e-02	ci left: 3.701709e-02	ci right 3.742776e-02	k: 121716	n:3270000
KS ci ratio: 1.179048e-01	ci left: 3.179938e-04	ci right 3.581291e-04	k: 1104	n:3270000
COBL   3270000 perm   4910 sec   (666 perm/sec)   p_kst 3.376147e-04   p_cons 3.722202e-02   p_joint 1.770642e-04

Joint ci ratio: 1.627547e-01	ci left: 1.624379e-04	ci right 1.915053e-04	k: 579	n:3280000
Cons ci ratio: 1.100876e-02	ci left: 3.701278e-02	ci right 3.742280e-02	k: 122073	n:3280000
KS ci ratio: 1.178515e-01	ci left: 3.173201e-04	ci right 3.573511e-04	k: 1105	n:3280000
COBL   3280000 perm   4938 sec   (664 perm/sec)   p_kst 3.368902e-04   p_cons 3.721738e-02   p_joint 1.765244e-04

Joint ci ratio: 1.626146e-01	ci left: 1.622358e-04	ci right 1.912395e-04	k: 580	n:3290000
Cons ci ratio: 1.099203e-02	ci left: 3.701304e-02	ci right 3.742243e-02	k: 122445	n:3290000
KS ci ratio: 1.177451e-01	ci left: 3.169456e-04	ci right 3.568907e-04	k: 1107	n:3290000
COBL   3290000 perm   4966 sec   (663 perm/sec)   p_kst 3.364742e-04   p_cons 3.721733e-02   p_joint 1.762918e-04

Joint ci ratio: 1.620577e-01	ci left: 1.629070e-04	ci right 1.919213e-04	k: 584	n:3300000
Cons ci ratio: 1.097537e-02	ci left: 3.701329e-02	ci right 3.742206e-02	k: 122817	n:3300000
KS ci ratio: 1.175332e-01	ci left: 3.171616e-04	ci right 3.570570e-04	k: 1111	n:3300000
COBL   3300000 perm   4993 sec   (661 perm/sec)   p_kst 3.366667e-04   p_cons 3.721727e-02   p_joint 1.769697e-04

Joint ci ratio: 1.617813e-01	ci left: 1.629946e-04	ci right 1.919702e-04	k: 586	n:3310000
Cons ci ratio: 1.095883e-02	ci left: 3.701325e-02	ci right 3.742140e-02	k: 123188	n:3310000
KS ci ratio: 1.173749e-01	ci left: 3.170832e-04	ci right 3.569113e-04	k: 1114	n:3310000
COBL   3310000 perm   5021 sec   (659 perm/sec)   p_kst 3.365559e-04   p_cons 3.721692e-02   p_joint 1.770393e-04

Joint ci ratio: 1.616437e-01	ci left: 1.627927e-04	ci right 1.917054e-04	k: 587	n:3320000
Cons ci ratio: 1.094182e-02	ci left: 3.701681e-02	ci right 3.742436e-02	k: 123571	n:3320000
KS ci ratio: 1.170082e-01	ci left: 3.181747e-04	ci right 3.580064e-04	k: 1121	n:3320000
COBL   3320000 perm   5048 sec   (658 perm/sec)   p_kst 3.376506e-04   p_cons 3.722018e-02   p_joint 1.768072e-04

Joint ci ratio: 1.616438e-01	ci left: 1.623038e-04	ci right 1.911297e-04	k: 587	n:3330000
Cons ci ratio: 1.092287e-02	ci left: 3.703353e-02	ci right 3.744055e-02	k: 123998	n:3330000
KS ci ratio: 1.169040e-01	ci left: 3.178023e-04	ci right 3.575495e-04	k: 1123	n:3330000
COBL   3330000 perm   5076 sec   (656 perm/sec)   p_kst 3.372372e-04   p_cons 3.723664e-02   p_joint 1.762763e-04

Joint ci ratio: 1.615065e-01	ci left: 1.621052e-04	ci right 1.908689e-04	k: 588	n:3340000
Cons ci ratio: 1.090643e-02	ci left: 3.703432e-02	ci right 3.744074e-02	k: 124372	n:3340000
KS ci ratio: 1.168002e-01	ci left: 3.174321e-04	ci right 3.570953e-04	k: 1125	n:3340000
COBL   3340000 perm   5105 sec   (654 perm/sec)   p_kst 3.368263e-04   p_cons 3.723713e-02   p_joint 1.760479e-04

Joint ci ratio: 1.615066e-01	ci left: 1.616213e-04	ci right 1.902992e-04	k: 588	n:3350000
Cons ci ratio: 1.089038e-02	ci left: 3.703302e-02	ci right 3.743882e-02	k: 124739	n:3350000
KS ci ratio: 1.166449e-01	ci left: 3.173539e-04	ci right 3.569510e-04	k: 1128	n:3350000
COBL   3350000 perm   5133 sec   (653 perm/sec)   p_kst 3.367164e-04   p_cons 3.723552e-02   p_joint 1.755224e-04

Joint ci ratio: 1.612330e-01	ci left: 1.617114e-04	ci right 1.903521e-04	k: 590	n:3360000
Cons ci ratio: 1.087522e-02	ci left: 3.702639e-02	ci right 3.743155e-02	k: 125088	n:3360000
KS ci ratio: 1.163875e-01	ci left: 3.178541e-04	ci right 3.574201e-04	k: 1133	n:3360000
COBL   3360000 perm   5161 sec   (651 perm/sec)   p_kst 3.372024e-04   p_cons 3.722857e-02   p_joint 1.755952e-04

Joint ci ratio: 1.371268e-01	ci left: 2.258075e-04	ci right 2.593340e-04	k: 816	n:3370000
Cons ci ratio: 1.085823e-02	ci left: 3.703223e-02	ci right 3.743682e-02	k: 125479	n:3370000
KS ci ratio: 1.162850e-01	ci left: 3.174871e-04	ci right 3.569702e-04	k: 1135	n:3370000
COBL   3370000 perm   5190 sec   (649 perm/sec)   p_kst 3.367953e-04   p_cons 3.723412e-02   p_joint 2.421365e-04

Joint ci ratio: 1.368757e-01	ci left: 2.259966e-04	ci right 2.594847e-04	k: 819	n:3380000
Cons ci ratio: 1.084280e-02	ci left: 3.702830e-02	ci right 3.743226e-02	k: 125837	n:3380000
KS ci ratio: 1.161828e-01	ci left: 3.171223e-04	ci right 3.565230e-04	k: 1137	n:3380000
COBL   3380000 perm   5218 sec   (648 perm/sec)   p_kst 3.363905e-04   p_cons 3.722988e-02   p_joint 2.423077e-04

Joint ci ratio: 1.366260e-01	ci left: 2.261847e-04	ci right 2.596345e-04	k: 822	n:3390000
Cons ci ratio: 1.082730e-02	ci left: 3.702527e-02	ci right 3.742862e-02	k: 126198	n:3390000
KS ci ratio: 1.160299e-01	ci left: 3.170461e-04	ci right 3.563820e-04	k: 1140	n:3390000
COBL   3390000 perm   5246 sec   (646 perm/sec)   p_kst 3.362832e-04   p_cons 3.722655e-02   p_joint 2.424779e-04

Joint ci ratio: 1.363777e-01	ci left: 2.263716e-04	ci right 2.597833e-04	k: 825	n:3400000
Cons ci ratio: 1.081191e-02	ci left: 3.702197e-02	ci right 3.742471e-02	k: 126558	n:3400000
KS ci ratio: 1.158271e-01	ci left: 3.172560e-04	ci right 3.565444e-04	k: 1144	n:3400000
COBL   3400000 perm   5275 sec   (645 perm/sec)   p_kst 3.364706e-04   p_cons 3.722294e-02   p_joint 2.426471e-04

Joint ci ratio: 1.361307e-01	ci left: 2.265576e-04	ci right 2.599312e-04	k: 828	n:3410000
Cons ci ratio: 1.079512e-02	ci left: 3.702834e-02	ci right 3.743052e-02	k: 126951	n:3410000
KS ci ratio: 1.157261e-01	ci left: 3.168951e-04	ci right 3.561023e-04	k: 1146	n:3410000
COBL   3410000 perm   5303 sec   (643 perm/sec)   p_kst 3.360704e-04   p_cons 3.722903e-02   p_joint 2.428152e-04

Joint ci ratio: 1.357219e-01	ci left: 2.273074e-04	ci right 2.606829e-04	k: 833	n:3420000
Cons ci ratio: 1.077961e-02	ci left: 3.702679e-02	ci right 3.742838e-02	k: 127317	n:3420000
KS ci ratio: 1.155248e-01	ci left: 3.171043e-04	ci right 3.562644e-04	k: 1150	n:3420000
COBL   3420000 perm   5332 sec   (641 perm/sec)   p_kst 3.362573e-04   p_cons 3.722719e-02   p_joint 2.435673e-04

Joint ci ratio: 1.313816e-01	ci left: 2.424260e-04	ci right 2.767943e-04	k: 889	n:3430000
Cons ci ratio: 1.076525e-02	ci left: 3.701799e-02	ci right 3.741894e-02	k: 127658	n:3430000
KS ci ratio: 1.152747e-01	ci left: 3.175955e-04	ci right 3.567255e-04	k: 1155	n:3430000
COBL   3430000 perm   5361 sec   (640 perm/sec)   p_kst 3.367347e-04   p_cons 3.721808e-02   p_joint 2.591837e-04

Joint ci ratio: 1.310141e-01	ci left: 2.431271e-04	ci right 2.774908e-04	k: 894	n:3440000
Cons ci ratio: 1.075073e-02	ci left: 3.701069e-02	ci right 3.741102e-02	k: 128004	n:3440000
KS ci ratio: 1.152249e-01	ci left: 3.169545e-04	ci right 3.559876e-04	k: 1156	n:3440000
COBL   3440000 perm   5390 sec   (638 perm/sec)   p_kst 3.360465e-04   p_cons 3.721047e-02   p_joint 2.598837e-04

Joint ci ratio: 1.307950e-01	ci left: 2.432634e-04	ci right 2.775845e-04	k: 897	n:3450000
Cons ci ratio: 1.073432e-02	ci left: 3.701644e-02	ci right 3.741622e-02	k: 128395	n:3450000
KS ci ratio: 1.151254e-01	ci left: 3.165988e-04	ci right 3.555522e-04	k: 1158	n:3450000
COBL   3450000 perm   5419 sec   (637 perm/sec)   p_kst 3.356522e-04   p_cons 3.721594e-02   p_joint 2.600000e-04

Joint ci ratio: 1.513152e-01	ci left: 1.792560e-04	ci right 2.088743e-04	k: 670	n:3460000
Cons ci ratio: 1.071747e-02	ci left: 3.702562e-02	ci right 3.742486e-02	k: 128798	n:3460000
KS ci ratio: 1.149273e-01	ci left: 3.168066e-04	ci right 3.557139e-04	k: 1162	n:3460000
COBL   3460000 perm   5448 sec   (635 perm/sec)   p_kst 3.358382e-04   p_cons 3.722486e-02   p_joint 1.936416e-04

Joint ci ratio: 1.508662e-01	ci left: 1.798485e-04	ci right 2.094687e-04	k: 674	n:3470000
Cons ci ratio: 1.070103e-02	ci left: 3.703245e-02	ci right 3.743115e-02	k: 129193	n:3470000
KS ci ratio: 1.147301e-01	ci left: 3.170133e-04	ci right 3.558746e-04	k: 1166	n:3470000
COBL   3470000 perm   5478 sec   (633 perm/sec)   p_kst 3.360231e-04   p_cons 3.723141e-02   p_joint 1.942363e-04

Joint ci ratio: 1.506432e-01	ci left: 1.798848e-04	ci right 2.094631e-04	k: 676	n:3480000
Cons ci ratio: 1.068523e-02	ci left: 3.703551e-02	ci right 3.743365e-02	k: 129575	n:3480000
KS ci ratio: 1.145830e-01	ci left: 3.169397e-04	ci right 3.557388e-04	k: 1169	n:3480000
COBL   3480000 perm   5507 sec   (632 perm/sec)   p_kst 3.359195e-04   p_cons 3.723420e-02   p_joint 1.942529e-04

Joint ci ratio: 1.505320e-01	ci left: 1.796451e-04	ci right 2.091603e-04	k: 677	n:3490000
Cons ci ratio: 1.067193e-02	ci left: 3.702227e-02	ci right 3.741976e-02	k: 129900	n:3490000
KS ci ratio: 1.143876e-01	ci left: 3.171448e-04	ci right 3.558984e-04	k: 1173	n:3490000
COBL   3490000 perm   5536 sec   (630 perm/sec)   p_kst 3.361032e-04   p_cons 3.722063e-02   p_joint 1.939828e-04

Joint ci ratio: 1.566607e-01	ci left: 1.648453e-04	ci right 1.931353e-04	k: 625	n:3500000
Cons ci ratio: 1.065664e-02	ci left: 3.702278e-02	ci right 3.741971e-02	k: 130273	n:3500000
KS ci ratio: 1.142417e-01	ci left: 3.170713e-04	ci right 3.557632e-04	k: 1176	n:3500000
COBL   3500000 perm   5565 sec   (629 perm/sec)   p_kst 3.360000e-04   p_cons 3.722086e-02   p_joint 1.785714e-04

Joint ci ratio: 1.210134e-01	ci left: 2.807725e-04	ci right 3.172112e-04	k: 1048	n:3510000
Cons ci ratio: 1.064091e-02	ci left: 3.702669e-02	ci right 3.742307e-02	k: 130658	n:3510000
KS ci ratio: 1.139516e-01	ci left: 3.178286e-04	ci right 3.565078e-04	k: 1182	n:3510000
COBL   3510000 perm   5595 sec   (627 perm/sec)   p_kst 3.367521e-04   p_cons 3.722450e-02   p_joint 2.985755e-04

Joint ci ratio: 1.208982e-01	ci left: 2.805258e-04	ci right 3.168954e-04	k: 1050	n:3520000
Cons ci ratio: 1.062693e-02	ci left: 3.701925e-02	ci right 3.741503e-02	k: 131003	n:3520000
KS ci ratio: 1.138554e-01	ci left: 3.174777e-04	ci right 3.560793e-04	k: 1184	n:3520000
COBL   3520000 perm   5625 sec   (626 perm/sec)   p_kst 3.363636e-04   p_cons 3.721676e-02   p_joint 2.982955e-04

Joint ci ratio: 1.207260e-01	ci left: 2.805553e-04	ci right 3.168732e-04	k: 1053	n:3530000
Cons ci ratio: 1.061225e-02	ci left: 3.701694e-02	ci right 3.741215e-02	k: 131366	n:3530000
KS ci ratio: 1.137116e-01	ci left: 3.174040e-04	ci right 3.559446e-04	k: 1187	n:3530000
COBL   3530000 perm   5655 sec   (624 perm/sec)   p_kst 3.362606e-04   p_cons 3.721416e-02   p_joint 2.983003e-04

Joint ci ratio: 1.206117e-01	ci left: 2.803107e-04	ci right 3.165601e-04	k: 1055	n:3540000
Cons ci ratio: 1.059709e-02	ci left: 3.701831e-02	ci right 3.741296e-02	k: 131742	n:3540000
KS ci ratio: 1.133780e-01	ci left: 3.184286e-04	ci right 3.569727e-04	k: 1194	n:3540000
COBL   3540000 perm   5684 sec   (623 perm/sec)   p_kst 3.372881e-04   p_cons 3.721525e-02   p_joint 2.980226e-04

Joint ci ratio: 1.203838e-01	ci left: 2.806139e-04	ci right 3.168291e-04	k: 1059	n:3550000
Cons ci ratio: 1.058221e-02	ci left: 3.701826e-02	ci right 3.741235e-02	k: 132113	n:3550000
KS ci ratio: 1.132359e-01	ci left: 3.183528e-04	ci right 3.568361e-04	k: 1197	n:3550000
COBL   3550000 perm   5714 sec   (621 perm/sec)   p_kst 3.371831e-04   p_cons 3.721493e-02   p_joint 2.983099e-04

Joint ci ratio: 1.202705e-01	ci left: 2.803705e-04	ci right 3.165178e-04	k: 1061	n:3560000
Cons ci ratio: 1.056697e-02	ci left: 3.702102e-02	ci right 3.741457e-02	k: 132494	n:3560000
KS ci ratio: 1.131888e-01	ci left: 3.177315e-04	ci right 3.561226e-04	k: 1198	n:3560000
COBL   3560000 perm   5744 sec   (620 perm/sec)   p_kst 3.365169e-04   p_cons 3.721742e-02   p_joint 2.980337e-04

Joint ci ratio: 1.202139e-01	ci left: 2.798569e-04	ci right 3.159197e-04	k: 1062	n:3570000
Cons ci ratio: 1.055196e-02	ci left: 3.702264e-02	ci right 3.741565e-02	k: 132871	n:3570000
KS ci ratio: 1.130945e-01	ci left: 3.173858e-04	ci right 3.557012e-04	k: 1200	n:3570000
COBL   3570000 perm   5776 sec   (618 perm/sec)   p_kst 3.361345e-04   p_cons 3.721877e-02   p_joint 2.974790e-04

Joint ci ratio: 1.201010e-01	ci left: 2.796170e-04	ci right 3.156127e-04	k: 1064	n:3580000
Cons ci ratio: 1.053672e-02	ci left: 3.702621e-02	ci right 3.741868e-02	k: 133255	n:3580000
KS ci ratio: 1.129535e-01	ci left: 3.173136e-04	ci right 3.555692e-04	k: 1203	n:3580000
COBL   3580000 perm   5807 sec   (617 perm/sec)   p_kst 3.360335e-04   p_cons 3.722207e-02   p_joint 2.972067e-04

Joint ci ratio: 1.198761e-01	ci left: 2.799189e-04	ci right 3.158812e-04	k: 1068	n:3590000
Cons ci ratio: 1.052238e-02	ci left: 3.702419e-02	ci right 3.741611e-02	k: 133619	n:3590000
KS ci ratio: 1.127197e-01	ci left: 3.177831e-04	ci right 3.560108e-04	k: 1208	n:3590000
COBL   3590000 perm   5837 sec   (615 perm/sec)   p_kst 3.364903e-04   p_cons 3.721978e-02   p_joint 2.974930e-04

Joint ci ratio: 1.195967e-01	ci left: 2.804887e-04	ci right 3.164342e-04	k: 1073	n:3600000
Cons ci ratio: 1.050751e-02	ci left: 3.702607e-02	ci right 3.741745e-02	k: 133997	n:3600000
KS ci ratio: 1.123947e-01	ci left: 3.187901e-04	ci right 3.570211e-04	k: 1215	n:3600000
COBL   3600000 perm   5866 sec   (614 perm/sec)   p_kst 3.375000e-04   p_cons 3.722139e-02   p_joint 2.980556e-04

Joint ci ratio: 1.193746e-01	ci left: 2.807866e-04	ci right 3.166988e-04	k: 1077	n:3610000
Cons ci ratio: 1.049333e-02	ci left: 3.702380e-02	ci right 3.741462e-02	k: 134360	n:3610000
KS ci ratio: 1.121643e-01	ci left: 3.192532e-04	ci right 3.574560e-04	k: 1220	n:3610000
COBL   3610000 perm   5896 sec   (612 perm/sec)   p_kst 3.379501e-04   p_cons 3.721884e-02   p_joint 2.983380e-04

Joint ci ratio: 1.192088e-01	ci left: 2.808149e-04	ci right 3.166774e-04	k: 1080	n:3620000
Cons ci ratio: 1.047907e-02	ci left: 3.702236e-02	ci right 3.741263e-02	k: 134726	n:3620000
KS ci ratio: 1.120268e-01	ci left: 3.191768e-04	ci right 3.573205e-04	k: 1223	n:3620000
COBL   3620000 perm   5927 sec   (611 perm/sec)   p_kst 3.378453e-04   p_cons 3.721713e-02   p_joint 2.983425e-04

Joint ci ratio: 1.312352e-01	ci left: 2.296020e-04	ci right 2.621131e-04	k: 891	n:3630000
Cons ci ratio: 1.046520e-02	ci left: 3.701874e-02	ci right 3.740845e-02	k: 135084	n:3630000
KS ci ratio: 1.117532e-01	ci left: 3.199041e-04	ci right 3.580353e-04	k: 1229	n:3630000
COBL   3630000 perm   5957 sec   (609 perm/sec)   p_kst 3.385675e-04   p_cons 3.721322e-02   p_joint 2.454545e-04

Joint ci ratio: 1.310883e-01	ci left: 2.295026e-04	ci right 2.619604e-04	k: 893	n:3640000
Cons ci ratio: 1.044970e-02	ci left: 3.702664e-02	ci right 3.741586e-02	k: 135484	n:3640000
KS ci ratio: 1.115267e-01	ci left: 3.203606e-04	ci right 3.584636e-04	k: 1234	n:3640000
COBL   3640000 perm   5987 sec   (608 perm/sec)   p_kst 3.390110e-04   p_cons 3.722088e-02   p_joint 2.453297e-04

Joint ci ratio: 1.307960e-01	ci left: 2.299338e-04	ci right 2.623745e-04	k: 897	n:3650000
Cons ci ratio: 1.043490e-02	ci left: 3.703013e-02	ci right 3.741883e-02	k: 135868	n:3650000
KS ci ratio: 1.113915e-01	ci left: 3.202819e-04	ci right 3.583264e-04	k: 1237	n:3650000
COBL   3650000 perm   6018 sec   (607 perm/sec)   p_kst 3.389041e-04   p_cons 3.722411e-02   p_joint 2.457534e-04

Joint ci ratio: 1.305780e-01	ci left: 2.300985e-04	ci right 2.625041e-04	k: 900	n:3660000
Cons ci ratio: 1.042037e-02	ci left: 3.703223e-02	ci right 3.742041e-02	k: 136247	n:3660000
KS ci ratio: 1.113466e-01	ci left: 3.196724e-04	ci right 3.576282e-04	k: 1238	n:3660000
COBL   3660000 perm   6048 sec   (605 perm/sec)   p_kst 3.382514e-04   p_cons 3.722596e-02   p_joint 2.459016e-04

Joint ci ratio: 1.303612e-01	ci left: 2.302623e-04	ci right 2.626329e-04	k: 903	n:3670000
Cons ci ratio: 1.040574e-02	ci left: 3.703542e-02	ci right 3.742308e-02	k: 136630	n:3670000
KS ci ratio: 1.112568e-01	ci left: 3.193311e-04	ci right 3.572138e-04	k: 1240	n:3670000
COBL   3670000 perm   6079 sec   (604 perm/sec)   p_kst 3.378747e-04   p_cons 3.722888e-02   p_joint 2.460490e-04

Joint ci ratio: 1.300021e-01	ci left: 2.309510e-04	ci right 2.633222e-04	k: 908	n:3680000
Cons ci ratio: 1.039286e-02	ci left: 3.702693e-02	ci right 3.741402e-02	k: 136970	n:3680000
KS ci ratio: 1.111226e-01	ci left: 3.192559e-04	ci right 3.570810e-04	k: 1243	n:3680000
COBL   3680000 perm   6110 sec   (602 perm/sec)   p_kst 3.377717e-04   p_cons 3.722011e-02   p_joint 2.467391e-04

Joint ci ratio: 1.298593e-01	ci left: 2.308495e-04	ci right 2.631682e-04	k: 910	n:3690000
Cons ci ratio: 1.037948e-02	ci left: 3.702227e-02	ci right 3.740881e-02	k: 137324	n:3690000
KS ci ratio: 1.110334e-01	ci left: 3.189177e-04	ci right 3.566704e-04	k: 1245	n:3690000
COBL   3690000 perm   6141 sec   (601 perm/sec)   p_kst 3.373984e-04   p_cons 3.721518e-02   p_joint 2.466125e-04

Joint ci ratio: 1.294337e-01	ci left: 2.317946e-04	ci right 2.641311e-04	k: 916	n:3700000
Cons ci ratio: 1.036553e-02	ci left: 3.702195e-02	ci right 3.740796e-02	k: 137694	n:3700000
KS ci ratio: 1.109000e-01	ci left: 3.188440e-04	ci right 3.565397e-04	k: 1248	n:3700000
COBL   3700000 perm   6171 sec   (600 perm/sec)   p_kst 3.372973e-04   p_cons 3.721459e-02   p_joint 2.475676e-04

Joint ci ratio: 1.293633e-01	ci left: 2.314307e-04	ci right 2.636974e-04	k: 917	n:3710000
Cons ci ratio: 1.035117e-02	ci left: 3.702486e-02	ci right 3.741037e-02	k: 138076	n:3710000
KS ci ratio: 1.108556e-01	ci left: 3.182467e-04	ci right 3.558557e-04	k: 1249	n:3710000
COBL   3710000 perm   6202 sec   (598 perm/sec)   p_kst 3.366577e-04   p_cons 3.721725e-02   p_joint 2.471698e-04

Joint ci ratio: 1.291524e-01	ci left: 2.315889e-04	ci right 2.638210e-04	k: 920	n:3720000
Cons ci ratio: 1.033772e-02	ci left: 3.702185e-02	ci right 3.740682e-02	k: 138436	n:3720000
KS ci ratio: 1.108114e-01	ci left: 3.176525e-04	ci right 3.551754e-04	k: 1250	n:3720000
COBL   3720000 perm   6233 sec   (597 perm/sec)   p_kst 3.360215e-04   p_cons 3.721398e-02   p_joint 2.473118e-04

Joint ci ratio: 1.287337e-01	ci left: 2.325247e-04	ci right 2.647742e-04	k: 926	n:3730000
Cons ci ratio: 1.032482e-02	ci left: 3.701539e-02	ci right 3.739981e-02	k: 138783	n:3730000
KS ci ratio: 1.105906e-01	ci left: 3.181043e-04	ci right 3.556008e-04	k: 1255	n:3730000
COBL   3730000 perm   6264 sec   (595 perm/sec)   p_kst 3.364611e-04   p_cons 3.720724e-02   p_joint 2.482574e-04

Joint ci ratio: 1.285259e-01	ci left: 2.326793e-04	ci right 2.648942e-04	k: 929	n:3740000
Cons ci ratio: 1.030932e-02	ci left: 3.702736e-02	ci right 3.741132e-02	k: 139199	n:3740000
KS ci ratio: 1.105026e-01	ci left: 3.177737e-04	ci right 3.551995e-04	k: 1257	n:3740000
COBL   3740000 perm   6294 sec   (594 perm/sec)   p_kst 3.360963e-04   p_cons 3.721898e-02   p_joint 2.483957e-04

Joint ci ratio: 1.283191e-01	ci left: 2.328332e-04	ci right 2.650135e-04	k: 932	n:3750000
Cons ci ratio: 1.029492e-02	ci left: 3.703209e-02	ci right 3.741556e-02	k: 139588	n:3750000
KS ci ratio: 1.104149e-01	ci left: 3.174449e-04	ci right 3.548004e-04	k: 1259	n:3750000
COBL   3750000 perm   6325 sec   (593 perm/sec)   p_kst 3.357333e-04   p_cons 3.722347e-02   p_joint 2.485333e-04

Joint ci ratio: 1.280448e-01	ci left: 2.332436e-04	ci right 2.654066e-04	k: 936	n:3760000
Cons ci ratio: 1.028215e-02	ci left: 3.702591e-02	ci right 3.740884e-02	k: 139936	n:3760000
KS ci ratio: 1.102837e-01	ci left: 3.173765e-04	ci right 3.546766e-04	k: 1262	n:3760000
COBL   3760000 perm   6356 sec   (592 perm/sec)   p_kst 3.356383e-04   p_cons 3.721702e-02   p_joint 2.489362e-04

Joint ci ratio: 1.279084e-01	ci left: 2.331385e-04	ci right 2.652500e-04	k: 938	n:3770000
Cons ci ratio: 1.026938e-02	ci left: 3.702003e-02	ci right 3.740243e-02	k: 140285	n:3770000
KS ci ratio: 1.101530e-01	ci left: 3.173085e-04	ci right 3.545535e-04	k: 1265	n:3770000
COBL   3770000 perm   6387 sec   (590 perm/sec)   p_kst 3.355438e-04   p_cons 3.721088e-02   p_joint 2.488064e-04

Joint ci ratio: 1.276368e-01	ci left: 2.335461e-04	ci right 2.656403e-04	k: 942	n:3780000
Cons ci ratio: 1.025591e-02	ci left: 3.701947e-02	ci right 3.740135e-02	k: 140654	n:3780000
KS ci ratio: 1.099794e-01	ci left: 3.174981e-04	ci right 3.547029e-04	k: 1269	n:3780000
COBL   3780000 perm   6419 sec   (589 perm/sec)   p_kst 3.357143e-04   p_cons 3.721005e-02   p_joint 2.492063e-04

Joint ci ratio: 1.275017e-01	ci left: 2.334407e-04	ci right 2.654840e-04	k: 944	n:3790000
Cons ci ratio: 1.024218e-02	ci left: 3.702101e-02	ci right 3.740239e-02	k: 141031	n:3790000
KS ci ratio: 1.098929e-01	ci left: 3.171736e-04	ci right 3.543092e-04	k: 1271	n:3790000
COBL   3790000 perm   6450 sec   (588 perm/sec)   p_kst 3.353562e-04   p_cons 3.721135e-02   p_joint 2.490765e-04

Joint ci ratio: 1.274343e-01	ci left: 2.330812e-04	ci right 2.650569e-04	k: 945	n:3800000
Cons ci ratio: 1.022946e-02	ci left: 3.701598e-02	ci right 3.739683e-02	k: 141383	n:3800000
KS ci ratio: 1.098066e-01	ci left: 3.168508e-04	ci right 3.539176e-04	k: 1273	n:3800000
COBL   3800000 perm   6482 sec   (586 perm/sec)   p_kst 3.350000e-04   p_cons 3.720605e-02   p_joint 2.486842e-04

Joint ci ratio: 1.272998e-01	ci left: 2.329776e-04	ci right 2.649028e-04	k: 947	n:3810000
Cons ci ratio: 1.021655e-02	ci left: 3.701255e-02	ci right 3.739288e-02	k: 141741	n:3810000
KS ci ratio: 1.097636e-01	ci left: 3.162744e-04	ci right 3.532583e-04	k: 1274	n:3810000
COBL   3810000 perm   6513 sec   (585 perm/sec)   p_kst 3.343832e-04   p_cons 3.720236e-02   p_joint 2.485564e-04

Joint ci ratio: 1.270321e-01	ci left: 2.333816e-04	ci right 2.652898e-04	k: 951	n:3820000
Cons ci ratio: 1.020365e-02	ci left: 3.700939e-02	ci right 3.738921e-02	k: 142100	n:3820000
KS ci ratio: 1.096347e-01	ci left: 3.162102e-04	ci right 3.531405e-04	k: 1277	n:3820000
COBL   3820000 perm   6545 sec   (584 perm/sec)   p_kst 3.342932e-04   p_cons 3.719895e-02   p_joint 2.489529e-04

Joint ci ratio: 1.269654e-01	ci left: 2.330250e-04	ci right 2.648665e-04	k: 952	n:3830000
Cons ci ratio: 1.019110e-02	ci left: 3.700417e-02	ci right 3.738347e-02	k: 142451	n:3830000
KS ci ratio: 1.095062e-01	ci left: 3.161464e-04	ci right 3.530232e-04	k: 1280	n:3830000
COBL   3830000 perm   6577 sec   (582 perm/sec)   p_kst 3.342037e-04   p_cons 3.719347e-02   p_joint 2.485640e-04

Joint ci ratio: 1.268324e-01	ci left: 2.329225e-04	ci right 2.647141e-04	k: 954	n:3840000
Cons ci ratio: 1.017645e-02	ci left: 3.701405e-02	ci right 3.739290e-02	k: 142860	n:3840000
KS ci ratio: 1.093782e-01	ci left: 3.160830e-04	ci right 3.529065e-04	k: 1283	n:3840000
COBL   3840000 perm   6607 sec   (581 perm/sec)   p_kst 3.341146e-04   p_cons 3.720312e-02   p_joint 2.484375e-04

Joint ci ratio: 1.266998e-01	ci left: 2.328205e-04	ci right 2.645625e-04	k: 956	n:3850000
Cons ci ratio: 1.016319e-02	ci left: 3.701455e-02	ci right 3.739290e-02	k: 143233	n:3850000
KS ci ratio: 1.092082e-01	ci left: 3.162726e-04	ci right 3.530572e-04	k: 1287	n:3850000
COBL   3850000 perm   6638 sec   (580 perm/sec)   p_kst 3.342857e-04   p_cons 3.720338e-02   p_joint 2.483117e-04

Joint ci ratio: 1.263701e-01	ci left: 2.334717e-04	ci right 2.652134e-04	k: 961	n:3860000
Cons ci ratio: 1.014965e-02	ci left: 3.701737e-02	ci right 3.739525e-02	k: 143615	n:3860000
KS ci ratio: 1.088706e-01	ci left: 3.174692e-04	ci right 3.542716e-04	k: 1295	n:3860000
COBL   3860000 perm   6671 sec   (579 perm/sec)   p_kst 3.354922e-04   p_cons 3.720596e-02   p_joint 2.489637e-04

Joint ci ratio: 1.262390e-01	ci left: 2.333688e-04	ci right 2.650612e-04	k: 963	n:3870000
Cons ci ratio: 1.013599e-02	ci left: 3.702146e-02	ci right 3.739887e-02	k: 144002	n:3870000
KS ci ratio: 1.088286e-01	ci left: 3.169003e-04	ci right 3.536216e-04	k: 1296	n:3870000
COBL   3870000 perm   6704 sec   (577 perm/sec)   p_kst 3.348837e-04   p_cons 3.720982e-02   p_joint 2.488372e-04

Joint ci ratio: 1.260430e-01	ci left: 2.335162e-04	ci right 2.651756e-04	k: 966	n:3880000
Cons ci ratio: 1.012245e-02	ci left: 3.702502e-02	ci right 3.740196e-02	k: 144387	n:3880000
KS ci ratio: 1.086195e-01	ci left: 3.173371e-04	ci right 3.540338e-04	k: 1301	n:3880000
COBL   3880000 perm   6736 sec   (576 perm/sec)   p_kst 3.353093e-04   p_cons 3.721314e-02   p_joint 2.489691e-04

Joint ci ratio: 1.259128e-01	ci left: 2.334138e-04	ci right 2.650243e-04	k: 968	n:3890000
Cons ci ratio: 1.011005e-02	ci left: 3.702087e-02	ci right 3.739730e-02	k: 144742	n:3890000
KS ci ratio: 1.084115e-01	ci left: 3.177718e-04	ci right 3.544439e-04	k: 1306	n:3890000
COBL   3890000 perm   6767 sec   (575 perm/sec)   p_kst 3.357326e-04   p_cons 3.720874e-02   p_joint 2.488432e-04

Joint ci ratio: 1.258479e-01	ci left: 2.330636e-04	ci right 2.646092e-04	k: 969	n:3900000
Cons ci ratio: 1.009791e-02	ci left: 3.701520e-02	ci right 3.739113e-02	k: 145091	n:3900000
KS ci ratio: 1.083286e-01	ci left: 3.174559e-04	ci right 3.540618e-04	k: 1308	n:3900000
COBL   3900000 perm   6799 sec   (574 perm/sec)   p_kst 3.353846e-04   p_cons 3.720282e-02   p_joint 2.484615e-04

Joint ci ratio: 1.141468e-01	ci left: 2.843201e-04	ci right 3.189845e-04	k: 1178	n:3910000
Cons ci ratio: 1.008607e-02	ci left: 3.700778e-02	ci right 3.738319e-02	k: 145433	n:3910000
KS ci ratio: 1.079581e-01	ci left: 3.188836e-04	ci right 3.555203e-04	k: 1317	n:3910000
COBL   3910000 perm   6831 sec   (572 perm/sec)   p_kst 3.368286e-04   p_cons 3.719514e-02   p_joint 3.012788e-04

Joint ci ratio: 1.139536e-01	ci left: 2.845861e-04	ci right 3.192203e-04	k: 1182	n:3920000
Cons ci ratio: 1.007456e-02	ci left: 3.699836e-02	ci right 3.737324e-02	k: 145767	n:3920000
KS ci ratio: 1.078354e-01	ci left: 3.188148e-04	ci right 3.553993e-04	k: 1320	n:3920000
COBL   3920000 perm   6863 sec   (571 perm/sec)   p_kst 3.367347e-04   p_cons 3.718546e-02   p_joint 3.015306e-04

Joint ci ratio: 1.138574e-01	ci left: 2.843563e-04	ci right 3.189314e-04	k: 1184	n:3930000
Cons ci ratio: 1.006187e-02	ci left: 3.699762e-02	ci right 3.737202e-02	k: 146135	n:3930000
KS ci ratio: 1.076725e-01	ci left: 3.189939e-04	ci right 3.555402e-04	k: 1324	n:3930000
COBL   3930000 perm   6896 sec   (570 perm/sec)   p_kst 3.368957e-04   p_cons 3.718448e-02   p_joint 3.012723e-04

Joint ci ratio: 1.137136e-01	ci left: 2.843744e-04	ci right 3.189050e-04	k: 1187	n:3940000
Cons ci ratio: 1.004934e-02	ci left: 3.699613e-02	ci right 3.737004e-02	k: 146500	n:3940000
KS ci ratio: 1.075103e-01	ci left: 3.191722e-04	ci right 3.556804e-04	k: 1328	n:3940000
COBL   3940000 perm   6927 sec   (569 perm/sec)   p_kst 3.370558e-04   p_cons 3.718274e-02   p_joint 3.012690e-04

Joint ci ratio: 1.136180e-01	ci left: 2.841464e-04	ci right 3.186184e-04	k: 1189	n:3950000
Cons ci ratio: 1.003654e-02	ci left: 3.699691e-02	ci right 3.737035e-02	k: 146874	n:3950000
KS ci ratio: 1.073489e-01	ci left: 3.193496e-04	ci right 3.558198e-04	k: 1332	n:3950000
COBL   3950000 perm   6960 sec   (568 perm/sec)   p_kst 3.372152e-04   p_cons 3.718329e-02   p_joint 3.010127e-04

Joint ci ratio: 1.135226e-01	ci left: 2.839195e-04	ci right 3.183332e-04	k: 1191	n:3960000
Cons ci ratio: 1.002371e-02	ci left: 3.699820e-02	ci right 3.737117e-02	k: 147250	n:3960000
KS ci ratio: 1.071882e-01	ci left: 3.195262e-04	ci right 3.559584e-04	k: 1336	n:3960000
COBL   3960000 perm   6993 sec   (566 perm/sec)   p_kst 3.373737e-04   p_cons 3.718434e-02   p_joint 3.007576e-04

Joint ci ratio: 1.243193e-01	ci left: 2.348104e-04	ci right 2.661779e-04	k: 993	n:3970000
Cons ci ratio: 1.001132e-02	ci left: 3.699671e-02	ci right 3.736920e-02	k: 147615	n:3970000
KS ci ratio: 1.069087e-01	ci left: 3.204373e-04	ci right 3.568722e-04	k: 1343	n:3970000
COBL   3970000 perm   7026 sec   (565 perm/sec)   p_kst 3.382872e-04   p_cons 3.718262e-02   p_joint 2.501259e-04

Joint ci ratio: 1.241321e-01	ci left: 2.349508e-04	ci right 2.662863e-04	k: 996	n:3980000
Cons ci ratio: 9.998129e-03	ci left: 3.700125e-02	ci right 3.737329e-02	k: 148004	n:3980000
KS ci ratio: 1.067895e-01	ci left: 3.203659e-04	ci right 3.567495e-04	k: 1346	n:3980000
COBL   3980000 perm   7058 sec   (564 perm/sec)   p_kst 3.381910e-04   p_cons 3.718693e-02   p_joint 2.502513e-04

Joint ci ratio: 1.240078e-01	ci left: 2.348476e-04	ci right 2.661358e-04	k: 998	n:3990000
Cons ci ratio: 9.985483e-03	ci left: 3.700226e-02	ci right 3.737385e-02	k: 148379	n:3990000
KS ci ratio: 1.067104e-01	ci left: 3.200508e-04	ci right 3.563700e-04	k: 1348	n:3990000
COBL   3990000 perm   7091 sec   (563 perm/sec)   p_kst 3.378446e-04   p_cons 3.718772e-02   p_joint 2.501253e-04

Joint ci ratio: 1.239458e-01	ci left: 2.345028e-04	ci right 2.657282e-04	k: 999	n:4000000
Cons ci ratio: 9.972850e-03	ci left: 3.700352e-02	ci right 3.737465e-02	k: 148755	n:4000000
KS ci ratio: 1.065525e-01	ci left: 3.202240e-04	ci right 3.565057e-04	k: 1352	n:4000000
COBL   4000000 perm   7123 sec   (562 perm/sec)   p_kst 3.380000e-04   p_cons 3.718875e-02   p_joint 2.497500e-04

Joint ci ratio: 1.237603e-01	ci left: 2.346429e-04	ci right 2.658368e-04	k: 1002	n:4010000
Cons ci ratio: 9.960161e-03	ci left: 3.700552e-02	ci right 3.737619e-02	k: 149134	n:4010000
KS ci ratio: 1.064739e-01	ci left: 3.199109e-04	ci right 3.561287e-04	k: 1354	n:4010000
COBL   4010000 perm   7157 sec   (560 perm/sec)   p_kst 3.376559e-04   p_cons 3.719052e-02   p_joint 2.498753e-04

Joint ci ratio: 1.124430e-01	ci left: 2.852417e-04	ci right 3.194650e-04	k: 1214	n:4020000
Cons ci ratio: 9.947036e-03	ci left: 3.701099e-02	ci right 3.738122e-02	k: 149527	n:4020000
KS ci ratio: 1.063170e-01	ci left: 3.200837e-04	ci right 3.562643e-04	k: 1358	n:4020000
COBL   4020000 perm   7189 sec   (559 perm/sec)   p_kst 3.378109e-04   p_cons 3.719577e-02   p_joint 3.019900e-04

Joint ci ratio: 1.124430e-01	ci left: 2.845339e-04	ci right 3.186722e-04	k: 1214	n:4030000
Cons ci ratio: 9.933309e-03	ci left: 3.702113e-02	ci right 3.739095e-02	k: 149939	n:4030000
KS ci ratio: 1.062389e-01	ci left: 3.197725e-04	ci right 3.558898e-04	k: 1360	n:4030000
COBL   4030000 perm   7223 sec   (558 perm/sec)   p_kst 3.374690e-04   p_cons 3.720571e-02   p_joint 3.012407e-04

Joint ci ratio: 1.122583e-01	ci left: 2.847918e-04	ci right 3.189014e-04	k: 1218	n:4040000
Cons ci ratio: 9.920942e-03	ci left: 3.702184e-02	ci right 3.739120e-02	k: 150313	n:4040000
KS ci ratio: 1.060831e-01	ci left: 3.199448e-04	ci right 3.560252e-04	k: 1364	n:4040000
COBL   4040000 perm   7256 sec   (557 perm/sec)   p_kst 3.376238e-04   p_cons 3.720619e-02   p_joint 3.014851e-04

Joint ci ratio: 1.121664e-01	ci left: 2.845686e-04	ci right 3.186216e-04	k: 1220	n:4050000
Cons ci ratio: 9.908552e-03	ci left: 3.702304e-02	ci right 3.739195e-02	k: 150689	n:4050000
KS ci ratio: 1.059280e-01	ci left: 3.201163e-04	ci right 3.561600e-04	k: 1368	n:4050000
COBL   4050000 perm   7290 sec   (556 perm/sec)   p_kst 3.377778e-04   p_cons 3.720716e-02   p_joint 3.012346e-04

Joint ci ratio: 1.121205e-01	ci left: 2.841071e-04	ci right 3.180901e-04	k: 1221	n:4060000
Cons ci ratio: 9.895868e-03	ci left: 3.702669e-02	ci right 3.739516e-02	k: 151075	n:4060000
KS ci ratio: 1.058122e-01	ci left: 3.200471e-04	ci right 3.560412e-04	k: 1371	n:4060000
COBL   4060000 perm   7323 sec   (554 perm/sec)   p_kst 3.376847e-04   p_cons 3.721059e-02   p_joint 3.007389e-04

Joint ci ratio: 1.120289e-01	ci left: 2.838867e-04	ci right 3.178137e-04	k: 1223	n:4070000
Cons ci ratio: 9.883808e-03	ci left: 3.702615e-02	ci right 3.739417e-02	k: 151444	n:4070000
KS ci ratio: 1.057351e-01	ci left: 3.197392e-04	ci right 3.556708e-04	k: 1373	n:4070000
COBL   4070000 perm   7357 sec   (553 perm/sec)   p_kst 3.373464e-04   p_cons 3.720983e-02   p_joint 3.004914e-04

Joint ci ratio: 1.119832e-01	ci left: 2.834291e-04	ci right 3.172867e-04	k: 1224	n:4080000
Cons ci ratio: 9.872300e-03	ci left: 3.702195e-02	ci right 3.738949e-02	k: 151798	n:4080000
KS ci ratio: 1.056967e-01	ci left: 3.191941e-04	ci right 3.550506e-04	k: 1374	n:4080000
COBL   4080000 perm   7390 sec   (552 perm/sec)   p_kst 3.367647e-04   p_cons 3.720539e-02   p_joint 3.000000e-04

Joint ci ratio: 1.119832e-01	ci left: 2.827361e-04	ci right 3.165109e-04	k: 1224	n:4090000
Cons ci ratio: 9.860057e-03	ci left: 3.702338e-02	ci right 3.739048e-02	k: 152175	n:4090000
KS ci ratio: 1.056199e-01	ci left: 3.188898e-04	ci right 3.546845e-04	k: 1376	n:4090000
COBL   4090000 perm   7424 sec   (551 perm/sec)   p_kst 3.364303e-04   p_cons 3.720660e-02   p_joint 2.992665e-04

Joint ci ratio: 1.118008e-01	ci left: 2.829948e-04	ci right 3.167419e-04	k: 1228	n:4100000
Cons ci ratio: 9.848329e-03	ci left: 3.702140e-02	ci right 3.738804e-02	k: 152538	n:4100000
KS ci ratio: 1.055433e-01	ci left: 3.185869e-04	ci right 3.543201e-04	k: 1378	n:4100000
COBL   4100000 perm   7458 sec   (550 perm/sec)   p_kst 3.360976e-04   p_cons 3.720439e-02   p_joint 2.995122e-04

Joint ci ratio: 1.116193e-01	ci left: 2.832523e-04	ci right 3.169716e-04	k: 1232	n:4110000
Cons ci ratio: 9.836209e-03	ci left: 3.702258e-02	ci right 3.738878e-02	k: 152914	n:4110000
KS ci ratio: 1.055051e-01	ci left: 3.180487e-04	ci right 3.537077e-04	k: 1379	n:4110000
COBL   4110000 perm   7492 sec   (549 perm/sec)   p_kst 3.355231e-04   p_cons 3.720535e-02   p_joint 2.997567e-04

Joint ci ratio: 1.114387e-01	ci left: 2.835086e-04	ci right 3.172002e-04	k: 1236	n:4120000
Cons ci ratio: 9.824400e-03	ci left: 3.702182e-02	ci right 3.738757e-02	k: 153282	n:4120000
KS ci ratio: 1.053906e-01	ci left: 3.179856e-04	ci right 3.535965e-04	k: 1382	n:4120000
COBL   4120000 perm   7526 sec   (547 perm/sec)   p_kst 3.354369e-04   p_cons 3.720437e-02   p_joint 3.000000e-04

Joint ci ratio: 1.113937e-01	ci left: 2.830575e-04	ci right 3.166811e-04	k: 1237	n:4130000
Cons ci ratio: 9.812566e-03	ci left: 3.702155e-02	ci right 3.738685e-02	k: 153652	n:4130000
KS ci ratio: 1.052765e-01	ci left: 3.179230e-04	ci right 3.534859e-04	k: 1385	n:4130000
COBL   4130000 perm   7560 sec   (546 perm/sec)   p_kst 3.353511e-04   p_cons 3.720387e-02   p_joint 2.995157e-04

Joint ci ratio: 1.113038e-01	ci left: 2.828434e-04	ci right 3.164127e-04	k: 1239	n:4140000
Cons ci ratio: 9.800611e-03	ci left: 3.702248e-02	ci right 3.738735e-02	k: 154027	n:4140000
KS ci ratio: 1.050871e-01	ci left: 3.183310e-04	ci right 3.538716e-04	k: 1390	n:4140000
COBL   4140000 perm   7594 sec   (545 perm/sec)   p_kst 3.357488e-04   p_cons 3.720459e-02   p_joint 2.992754e-04

Joint ci ratio: 1.112590e-01	ci left: 2.823961e-04	ci right 3.158979e-04	k: 1240	n:4150000
Cons ci ratio: 9.788600e-03	ci left: 3.702413e-02	ci right 3.738856e-02	k: 154405	n:4150000
KS ci ratio: 1.049363e-01	ci left: 3.185025e-04	ci right 3.540080e-04	k: 1394	n:4150000
COBL   4150000 perm   7628 sec   (544 perm/sec)   p_kst 3.359036e-04   p_cons 3.720602e-02   p_joint 2.987952e-04

Joint ci ratio: 1.111248e-01	ci left: 2.824184e-04	ci right 3.158797e-04	k: 1243	n:4160000
Cons ci ratio: 9.776567e-03	ci left: 3.702625e-02	ci right 3.739026e-02	k: 154785	n:4160000
KS ci ratio: 1.047488e-01	ci left: 3.189072e-04	ci right 3.543905e-04	k: 1399	n:4160000
COBL   4160000 perm   7662 sec   (543 perm/sec)   p_kst 3.362981e-04   p_cons 3.720793e-02   p_joint 2.987981e-04

Joint ci ratio: 1.111248e-01	ci left: 2.817411e-04	ci right 3.151222e-04	k: 1243	n:4170000
Cons ci ratio: 9.765134e-03	ci left: 3.702430e-02	ci right 3.738785e-02	k: 155148	n:4170000
KS ci ratio: 1.047488e-01	ci left: 3.181425e-04	ci right 3.535406e-04	k: 1399	n:4170000
COBL   4170000 perm   7696 sec   (542 perm/sec)   p_kst 3.354916e-04   p_cons 3.720576e-02   p_joint 2.980815e-04

Joint ci ratio: 1.108578e-01	ci left: 2.824627e-04	ci right 3.158436e-04	k: 1249	n:4180000
Cons ci ratio: 9.753807e-03	ci left: 3.702188e-02	ci right 3.738498e-02	k: 155509	n:4180000
KS ci ratio: 1.045995e-01	ci left: 3.183133e-04	ci right 3.536768e-04	k: 1403	n:4180000
COBL   4180000 perm   7730 sec   (541 perm/sec)   p_kst 3.356459e-04   p_cons 3.720311e-02   p_joint 2.988038e-04

Joint ci ratio: 1.107250e-01	ci left: 2.824847e-04	ci right 3.158256e-04	k: 1252	n:4190000
Cons ci ratio: 9.742908e-03	ci left: 3.701661e-02	ci right 3.737926e-02	k: 155858	n:4190000
KS ci ratio: 1.044879e-01	ci left: 3.182508e-04	ci right 3.535674e-04	k: 1406	n:4190000
COBL   4190000 perm   7765 sec   (540 perm/sec)   p_kst 3.355609e-04   p_cons 3.719761e-02   p_joint 2.988067e-04

Joint ci ratio: 1.104608e-01	ci left: 2.832012e-04	ci right 3.165417e-04	k: 1258	n:4200000
Cons ci ratio: 9.731658e-03	ci left: 3.701422e-02	ci right 3.737642e-02	k: 156219	n:4200000
KS ci ratio: 1.043397e-01	ci left: 3.184206e-04	ci right 3.537028e-04	k: 1410	n:4200000
COBL   4200000 perm   7799 sec   (539 perm/sec)   p_kst 3.357143e-04   p_cons 3.719500e-02   p_joint 2.995238e-04

Joint ci ratio: 1.101549e-01	ci left: 2.841453e-04	ci right 3.174984e-04	k: 1265	n:4210000
Cons ci ratio: 9.718867e-03	ci left: 3.702345e-02	ci right 3.738526e-02	k: 156629	n:4210000
KS ci ratio: 1.040451e-01	ci left: 3.195150e-04	ci right 3.548124e-04	k: 1418	n:4210000
COBL   4210000 perm   7834 sec   (537 perm/sec)   p_kst 3.368171e-04   p_cons 3.720404e-02   p_joint 3.004751e-04

Joint ci ratio: 1.100680e-01	ci left: 2.839329e-04	ci right 3.172330e-04	k: 1267	n:4220000
Cons ci ratio: 9.707089e-03	ci left: 3.702555e-02	ci right 3.738694e-02	k: 157009	n:4220000
KS ci ratio: 1.039719e-01	ci left: 3.192194e-04	ci right 3.544579e-04	k: 1420	n:4220000
COBL   4220000 perm   7869 sec   (536 perm/sec)   p_kst 3.364929e-04   p_cons 3.720592e-02   p_joint 3.002370e-04

Joint ci ratio: 1.099813e-01	ci left: 2.837214e-04	ci right 3.169689e-04	k: 1269	n:4230000
Cons ci ratio: 9.695610e-03	ci left: 3.702574e-02	ci right 3.738671e-02	k: 157381	n:4230000
KS ci ratio: 1.038623e-01	ci left: 3.191556e-04	ci right 3.543476e-04	k: 1423	n:4230000
COBL   4230000 perm   7903 sec   (535 perm/sec)   p_kst 3.364066e-04   p_cons 3.720591e-02   p_joint 3.000000e-04

Joint ci ratio: 1.099814e-01	ci left: 2.830523e-04	ci right 3.162213e-04	k: 1269	n:4240000
Cons ci ratio: 9.684108e-03	ci left: 3.702641e-02	ci right 3.738695e-02	k: 157755	n:4240000
KS ci ratio: 1.037531e-01	ci left: 3.190920e-04	ci right 3.542377e-04	k: 1426	n:4240000
COBL   4240000 perm   7938 sec   (534 perm/sec)   p_kst 3.363208e-04   p_cons 3.720637e-02   p_joint 2.992925e-04

Joint ci ratio: 1.098086e-01	ci left: 2.833016e-04	ci right 3.164443e-04	k: 1273	n:4250000
Cons ci ratio: 9.673314e-03	ci left: 3.702215e-02	ci right 3.738225e-02	k: 158108	n:4250000
KS ci ratio: 1.036079e-01	ci left: 3.192580e-04	ci right 3.543698e-04	k: 1430	n:4250000
COBL   4250000 perm   7973 sec   (533 perm/sec)   p_kst 3.364706e-04   p_cons 3.720188e-02   p_joint 2.995294e-04

Joint ci ratio: 1.095937e-01	ci left: 2.837781e-04	ci right 3.169073e-04	k: 1278	n:4260000
Cons ci ratio: 9.661321e-03	ci left: 3.702704e-02	ci right 3.738673e-02	k: 158500	n:4260000
KS ci ratio: 1.034274e-01	ci left: 3.196519e-04	ci right 3.547420e-04	k: 1435	n:4260000
COBL   4260000 perm   8008 sec   (532 perm/sec)   p_kst 3.368545e-04   p_cons 3.720657e-02   p_joint 3.000000e-04

Joint ci ratio: 1.094227e-01	ci left: 2.840246e-04	ci right 3.171276e-04	k: 1282	n:4270000
Cons ci ratio: 9.649531e-03	ci left: 3.703074e-02	ci right 3.739003e-02	k: 158887	n:4270000
KS ci ratio: 1.032836e-01	ci left: 3.198158e-04	ci right 3.548722e-04	k: 1439	n:4270000
COBL   4270000 perm   8042 sec   (531 perm/sec)   p_kst 3.370023e-04   p_cons 3.721007e-02   p_joint 3.002342e-04

Joint ci ratio: 1.092950e-01	ci left: 2.840428e-04	ci right 3.171067e-04	k: 1285	n:4280000
Cons ci ratio: 9.637752e-03	ci left: 3.703466e-02	ci right 3.739354e-02	k: 159275	n:4280000
KS ci ratio: 1.031405e-01	ci left: 3.199791e-04	ci right 3.550018e-04	k: 1443	n:4280000
COBL   4280000 perm   8077 sec   (530 perm/sec)   p_kst 3.371495e-04   p_cons 3.721379e-02   p_joint 3.002336e-04

Joint ci ratio: 1.092526e-01	ci left: 2.836074e-04	ci right 3.166070e-04	k: 1286	n:4290000
Cons ci ratio: 9.626454e-03	ci left: 3.703530e-02	ci right 3.739377e-02	k: 159649	n:4290000
KS ci ratio: 1.031048e-01	ci left: 3.194603e-04	ci right 3.544134e-04	k: 1444	n:4290000
COBL   4290000 perm   8112 sec   (529 perm/sec)   p_kst 3.365967e-04   p_cons 3.721422e-02   p_joint 2.997669e-04

Joint ci ratio: 1.091254e-01	ci left: 2.836264e-04	ci right 3.165875e-04	k: 1289	n:4300000
Cons ci ratio: 9.615883e-03	ci left: 3.703083e-02	ci right 3.738886e-02	k: 160001	n:4300000
KS ci ratio: 1.030692e-01	ci left: 3.189439e-04	ci right 3.538277e-04	k: 1445	n:4300000
COBL   4300000 perm   8147 sec   (528 perm/sec)   p_kst 3.360465e-04   p_cons 3.720953e-02   p_joint 2.997674e-04

Joint ci ratio: 1.193221e-01	ci left: 2.354080e-04	ci right 2.655021e-04	k: 1078	n:4310000
Cons ci ratio: 9.604351e-03	ci left: 3.703379e-02	ci right 3.739142e-02	k: 160385	n:4310000
KS ci ratio: 1.029269e-01	ci left: 3.191081e-04	ci right 3.539588e-04	k: 1449	n:4310000
COBL   4310000 perm   8182 sec   (527 perm/sec)   p_kst 3.361949e-04   p_cons 3.721230e-02   p_joint 2.501160e-04

Joint ci ratio: 1.193221e-01	ci left: 2.348630e-04	ci right 2.648876e-04	k: 1078	n:4320000
Cons ci ratio: 9.593449e-03	ci left: 3.703236e-02	ci right 3.738956e-02	k: 160750	n:4320000
KS ci ratio: 1.028560e-01	ci left: 3.188204e-04	ci right 3.536143e-04	k: 1451	n:4320000
COBL   4320000 perm   8218 sec   (526 perm/sec)   p_kst 3.358796e-04   p_cons 3.721065e-02   p_joint 2.495370e-04

Joint ci ratio: 1.191016e-01	ci left: 2.352169e-04	ci right 2.652271e-04	k: 1082	n:4330000
Cons ci ratio: 9.582152e-03	ci left: 3.703415e-02	ci right 3.739095e-02	k: 161129	n:4330000
KS ci ratio: 1.028206e-01	ci left: 3.183091e-04	ci right 3.530345e-04	k: 1452	n:4330000
COBL   4330000 perm   8254 sec   (525 perm/sec)   p_kst 3.353349e-04   p_cons 3.721224e-02   p_joint 2.498845e-04

Joint ci ratio: 1.188275e-01	ci left: 2.357927e-04	ci right 2.658023e-04	k: 1087	n:4340000
Cons ci ratio: 9.570987e-03	ci left: 3.703525e-02	ci right 3.739164e-02	k: 161505	n:4340000
KS ci ratio: 1.025036e-01	ci left: 3.195962e-04	ci right 3.543480e-04	k: 1461	n:4340000
COBL   4340000 perm   8290 sec   (524 perm/sec)   p_kst 3.366359e-04   p_cons 3.721313e-02   p_joint 2.504608e-04

Joint ci ratio: 1.187730e-01	ci left: 2.354737e-04	ci right 2.654280e-04	k: 1088	n:4350000
Cons ci ratio: 9.559922e-03	ci left: 3.703588e-02	ci right 3.739186e-02	k: 161879	n:4350000
KS ci ratio: 1.023288e-01	ci left: 3.199815e-04	ci right 3.547123e-04	k: 1466	n:4350000
COBL   4350000 perm   8325 sec   (523 perm/sec)   p_kst 3.370115e-04   p_cons 3.721356e-02   p_joint 2.501149e-04

Joint ci ratio: 1.185554e-01	ci left: 2.358238e-04	ci right 2.657639e-04	k: 1092	n:4360000
Cons ci ratio: 9.548284e-03	ci left: 3.704109e-02	ci right 3.739668e-02	k: 162273	n:4360000
KS ci ratio: 1.022243e-01	ci left: 3.199181e-04	ci right 3.546044e-04	k: 1469	n:4360000
COBL   4360000 perm   8361 sec   (521 perm/sec)   p_kst 3.369266e-04   p_cons 3.721858e-02   p_joint 2.504587e-04

Joint ci ratio: 1.183931e-01	ci left: 2.359503e-04	ci right 2.658626e-04	k: 1095	n:4370000
Cons ci ratio: 9.537785e-03	ci left: 3.703805e-02	ci right 3.739323e-02	k: 162631	n:4370000
KS ci ratio: 1.021548e-01	ci left: 3.196319e-04	ci right 3.542623e-04	k: 1471	n:4370000
COBL   4370000 perm   8397 sec   (520 perm/sec)   p_kst 3.366133e-04   p_cons 3.721533e-02   p_joint 2.505721e-04

Joint ci ratio: 1.182852e-01	ci left: 2.358547e-04	ci right 2.657257e-04	k: 1097	n:4380000
Cons ci ratio: 9.527230e-03	ci left: 3.703571e-02	ci right 3.739047e-02	k: 162992	n:4380000
KS ci ratio: 1.020855e-01	ci left: 3.193471e-04	ci right 3.539218e-04	k: 1473	n:4380000
COBL   4380000 perm   8433 sec   (519 perm/sec)   p_kst 3.363014e-04   p_cons 3.721279e-02   p_joint 2.504566e-04

Joint ci ratio: 1.182314e-01	ci left: 2.355385e-04	ci right 2.653549e-04	k: 1098	n:4390000
Cons ci ratio: 9.516740e-03	ci left: 3.703316e-02	ci right 3.738750e-02	k: 163352	n:4390000
KS ci ratio: 1.020164e-01	ci left: 3.190637e-04	ci right 3.535828e-04	k: 1475	n:4390000
COBL   4390000 perm   8469 sec   (518 perm/sec)   p_kst 3.359909e-04   p_cons 3.721002e-02   p_joint 2.501139e-04

Joint ci ratio: 1.180168e-01	ci left: 2.358855e-04	ci right 2.656878e-04	k: 1102	n:4400000
Cons ci ratio: 9.506163e-03	ci left: 3.703152e-02	ci right 3.738545e-02	k: 163716	n:4400000
KS ci ratio: 1.019128e-01	ci left: 3.190029e-04	ci right 3.534784e-04	k: 1478	n:4400000
COBL   4400000 perm   8505 sec   (517 perm/sec)   p_kst 3.359091e-04   p_cons 3.720818e-02   p_joint 2.504545e-04

Joint ci ratio: 1.179634e-01	ci left: 2.355706e-04	ci right 2.653188e-04	k: 1103	n:4410000
Cons ci ratio: 9.494450e-03	ci left: 3.703872e-02	ci right 3.739228e-02	k: 164119	n:4410000
KS ci ratio: 1.017410e-01	ci left: 3.193845e-04	ci right 3.538395e-04	k: 1483	n:4410000
COBL   4410000 perm   8541 sec   (516 perm/sec)   p_kst 3.362812e-04   p_cons 3.721519e-02   p_joint 2.501134e-04

Joint ci ratio: 1.178034e-01	ci left: 2.356964e-04	ci right 2.654172e-04	k: 1106	n:4420000
Cons ci ratio: 9.484248e-03	ci left: 3.703482e-02	ci right 3.738796e-02	k: 164473	n:4420000
KS ci ratio: 1.017068e-01	ci left: 3.188824e-04	ci right 3.532709e-04	k: 1484	n:4420000
COBL   4420000 perm   8578 sec   (515 perm/sec)   p_kst 3.357466e-04   p_cons 3.721109e-02   p_joint 2.502262e-04

Joint ci ratio: 1.178034e-01	ci left: 2.351643e-04	ci right 2.648181e-04	k: 1106	n:4430000
Cons ci ratio: 9.473540e-03	ci left: 3.703499e-02	ci right 3.738773e-02	k: 164845	n:4430000
KS ci ratio: 1.016384e-01	ci left: 3.186025e-04	ci right 3.529364e-04	k: 1486	n:4430000
COBL   4430000 perm   8614 sec   (514 perm/sec)   p_kst 3.354402e-04   p_cons 3.721106e-02   p_joint 2.496614e-04

Joint ci ratio: 1.177503e-01	ci left: 2.348533e-04	ci right 2.644535e-04	k: 1107	n:4440000
Cons ci ratio: 9.462780e-03	ci left: 3.703584e-02	ci right 3.738819e-02	k: 165220	n:4440000
KS ci ratio: 1.016042e-01	ci left: 3.181045e-04	ci right 3.523725e-04	k: 1487	n:4440000
COBL   4440000 perm   8651 sec   (513 perm/sec)   p_kst 3.349099e-04   p_cons 3.721171e-02   p_joint 2.493243e-04

Joint ci ratio: 1.175912e-01	ci left: 2.349798e-04	ci right 2.645532e-04	k: 1110	n:4450000
Cons ci ratio: 9.452027e-03	ci left: 3.703691e-02	ci right 3.738886e-02	k: 165596	n:4450000
KS ci ratio: 1.015360e-01	ci left: 3.178276e-04	ci right 3.520415e-04	k: 1489	n:4450000
COBL   4450000 perm   8687 sec   (512 perm/sec)   p_kst 3.346067e-04   p_cons 3.721258e-02   p_joint 2.494382e-04

Joint ci ratio: 1.175383e-01	ci left: 2.346706e-04	ci right 2.641909e-04	k: 1111	n:4460000
Cons ci ratio: 9.441369e-03	ci left: 3.703752e-02	ci right 3.738909e-02	k: 165970	n:4460000
KS ci ratio: 1.014340e-01	ci left: 3.177706e-04	ci right 3.519419e-04	k: 1492	n:4460000
COBL   4460000 perm   8724 sec   (511 perm/sec)   p_kst 3.345291e-04   p_cons 3.721300e-02   p_joint 2.491031e-04

Joint ci ratio: 1.173801e-01	ci left: 2.347970e-04	ci right 2.642907e-04	k: 1114	n:4470000
Cons ci ratio: 9.430924e-03	ci left: 3.703680e-02	ci right 3.738796e-02	k: 166338	n:4470000
KS ci ratio: 1.013322e-01	ci left: 3.177138e-04	ci right 3.518427e-04	k: 1495	n:4470000
COBL   4470000 perm   8760 sec   (510 perm/sec)   p_kst 3.344519e-04   p_cons 3.721208e-02   p_joint 2.492170e-04

Joint ci ratio: 1.172750e-01	ci left: 2.347062e-04	ci right 2.641603e-04	k: 1116	n:4480000
Cons ci ratio: 9.421189e-03	ci left: 3.703095e-02	ci right 3.738170e-02	k: 166683	n:4480000
KS ci ratio: 1.012308e-01	ci left: 3.176573e-04	ci right 3.517439e-04	k: 1498	n:4480000
COBL   4480000 perm   8797 sec   (509 perm/sec)   p_kst 3.343750e-04   p_cons 3.720603e-02   p_joint 2.491071e-04

Joint ci ratio: 1.171178e-01	ci left: 2.348321e-04	ci right 2.642597e-04	k: 1119	n:4490000
Cons ci ratio: 9.411425e-03	ci left: 3.702558e-02	ci right 3.737591e-02	k: 167030	n:4490000
KS ci ratio: 1.010960e-01	ci left: 3.178182e-04	ci right 3.518739e-04	k: 1502	n:4490000
COBL   4490000 perm   8834 sec   (508 perm/sec)   p_kst 3.345212e-04   p_cons 3.720045e-02   p_joint 2.492205e-04

Joint ci ratio: 1.169612e-01	ci left: 2.349574e-04	ci right 2.643586e-04	k: 1122	n:4500000
Cons ci ratio: 9.400699e-03	ci left: 3.702777e-02	ci right 3.737772e-02	k: 167411	n:4500000
KS ci ratio: 1.009952e-01	ci left: 3.177617e-04	ci right 3.517755e-04	k: 1505	n:4500000
COBL   4500000 perm   8872 sec   (507 perm/sec)   p_kst 3.344444e-04   p_cons 3.720244e-02   p_joint 2.493333e-04

Joint ci ratio: 1.169092e-01	ci left: 2.346517e-04	ci right 2.640007e-04	k: 1123	n:4510000
Cons ci ratio: 9.390243e-03	ci left: 3.702818e-02	ci right 3.737774e-02	k: 167784	n:4510000
KS ci ratio: 1.008948e-01	ci left: 3.177056e-04	ci right 3.516775e-04	k: 1508	n:4510000
COBL   4510000 perm   8909 sec   (506 perm/sec)   p_kst 3.343681e-04   p_cons 3.720266e-02   p_joint 2.490022e-04

Joint ci ratio: 1.166500e-01	ci left: 2.352064e-04	ci right 2.645551e-04	k: 1128	n:4520000
Cons ci ratio: 9.379648e-03	ci left: 3.702991e-02	ci right 3.737909e-02	k: 168163	n:4520000
KS ci ratio: 1.006948e-01	ci left: 3.182966e-04	ci right 3.522603e-04	k: 1514	n:4520000
COBL   4520000 perm   8947 sec   (505 perm/sec)   p_kst 3.349558e-04   p_cons 3.720420e-02   p_joint 2.495575e-04

Joint ci ratio: 1.164953e-01	ci left: 2.353301e-04	ci right 2.646526e-04	k: 1131	n:4530000
Cons ci ratio: 9.368483e-03	ci left: 3.703626e-02	ci right 3.738508e-02	k: 168563	n:4530000
KS ci ratio: 1.006284e-01	ci left: 3.180244e-04	ci right 3.519353e-04	k: 1516	n:4530000
COBL   4530000 perm   8984 sec   (504 perm/sec)   p_kst 3.346578e-04   p_cons 3.721038e-02   p_joint 2.496689e-04

Joint ci ratio: 1.162389e-01	ci left: 2.358810e-04	ci right 2.652030e-04	k: 1136	n:4540000
Cons ci ratio: 9.358450e-03	ci left: 3.703423e-02	ci right 3.738266e-02	k: 168925	n:4540000
KS ci ratio: 1.004960e-01	ci left: 3.181828e-04	ci right 3.520633e-04	k: 1520	n:4540000
COBL   4540000 perm   9022 sec   (503 perm/sec)   p_kst 3.348018e-04   p_cons 3.720815e-02   p_joint 2.502203e-04

Joint ci ratio: 1.160858e-01	ci left: 2.360028e-04	ci right 2.652987e-04	k: 1139	n:4550000
Cons ci ratio: 9.347819e-03	ci left: 3.703704e-02	ci right 3.738509e-02	k: 169309	n:4550000
KS ci ratio: 1.003312e-01	ci left: 3.185548e-04	ci right 3.524160e-04	k: 1525	n:4550000
COBL   4550000 perm   9059 sec   (502 perm/sec)   p_kst 3.351648e-04   p_cons 3.721077e-02   p_joint 2.503297e-04

Joint ci ratio: 1.159841e-01	ci left: 2.359111e-04	ci right 2.651682e-04	k: 1141	n:4560000
Cons ci ratio: 9.338367e-03	ci left: 3.703108e-02	ci right 3.737872e-02	k: 169653	n:4560000
KS ci ratio: 1.002327e-01	ci left: 3.184976e-04	ci right 3.523176e-04	k: 1528	n:4560000
COBL   4560000 perm   9096 sec   (501 perm/sec)   p_kst 3.350877e-04   p_cons 3.720461e-02   p_joint 2.502193e-04

Joint ci ratio: 1.159334e-01	ci left: 2.356074e-04	ci right 2.648131e-04	k: 1142	n:4570000
Cons ci ratio: 9.328516e-03	ci left: 3.702842e-02	ci right 3.737567e-02	k: 170012	n:4570000
KS ci ratio: 1.001018e-01	ci left: 3.186540e-04	ci right 3.524438e-04	k: 1532	n:4570000
COBL   4570000 perm   9134 sec   (500 perm/sec)   p_kst 3.352298e-04   p_cons 3.720175e-02   p_joint 2.498906e-04

Joint ci ratio: 1.157816e-01	ci left: 2.357290e-04	ci right 2.649089e-04	k: 1145	n:4580000
Cons ci ratio: 9.318298e-03	ci left: 3.702882e-02	ci right 3.737569e-02	k: 170385	n:4580000
KS ci ratio: 9.993898e-02	ci left: 3.190227e-04	ci right 3.527933e-04	k: 1537	n:4580000
COBL   4580000 perm   9172 sec   (499 perm/sec)   p_kst 3.355895e-04   p_cons 3.720197e-02   p_joint 2.500000e-04

Joint ci ratio: 1.155298e-01	ci left: 2.362732e-04	ci right 2.654526e-04	k: 1150	n:4590000
Cons ci ratio: 9.308964e-03	ci left: 3.702270e-02	ci right 3.736917e-02	k: 170728	n:4590000
KS ci ratio: 9.974458e-02	ci left: 3.196022e-04	ci right 3.533645e-04	k: 1543	n:4590000
COBL   4590000 perm   9209 sec   (498 perm/sec)   p_kst 3.361656e-04   p_cons 3.719564e-02   p_joint 2.505447e-04

Joint ci ratio: 1.154295e-01	ci left: 2.361818e-04	ci right 2.653229e-04	k: 1152	n:4600000
Cons ci ratio: 9.298726e-03	ci left: 3.702377e-02	ci right 3.736986e-02	k: 171104	n:4600000
KS ci ratio: 9.961562e-02	ci left: 3.197553e-04	ci right 3.534876e-04	k: 1547	n:4600000
COBL   4600000 perm   9247 sec   (497 perm/sec)   p_kst 3.363043e-04   p_cons 3.719652e-02   p_joint 2.504348e-04

Joint ci ratio: 1.153795e-01	ci left: 2.358802e-04	ci right 2.649705e-04	k: 1153	n:4610000
Cons ci ratio: 9.288269e-03	ci left: 3.702678e-02	ci right 3.737250e-02	k: 171489	n:4610000
KS ci ratio: 9.942310e-02	ci left: 3.203308e-04	ci right 3.540547e-04	k: 1553	n:4610000
COBL   4610000 perm   9285 sec   (497 perm/sec)   p_kst 3.368764e-04   p_cons 3.719935e-02   p_joint 2.501085e-04

Joint ci ratio: 1.153296e-01	ci left: 2.355798e-04	ci right 2.646197e-04	k: 1154	n:4620000
Cons ci ratio: 9.278884e-03	ci left: 3.702178e-02	ci right 3.736711e-02	k: 171837	n:4620000
KS ci ratio: 9.935920e-02	ci left: 3.200596e-04	ci right 3.537320e-04	k: 1555	n:4620000
COBL   4620000 perm   9323 sec   (496 perm/sec)   p_kst 3.365801e-04   p_cons 3.719416e-02   p_joint 2.497835e-04

Joint ci ratio: 1.152299e-01	ci left: 2.354905e-04	ci right 2.644926e-04	k: 1156	n:4630000
Cons ci ratio: 9.268437e-03	ci left: 3.702521e-02	ci right 3.737018e-02	k: 172224	n:4630000
KS ci ratio: 9.926356e-02	ci left: 3.200002e-04	ci right 3.536320e-04	k: 1558	n:4630000
COBL   4630000 perm   9361 sec   (495 perm/sec)   p_kst 3.365011e-04   p_cons 3.719741e-02   p_joint 2.496760e-04

Joint ci ratio: 1.151304e-01	ci left: 2.354016e-04	ci right 2.643660e-04	k: 1158	n:4640000
Cons ci ratio: 9.259307e-03	ci left: 3.701874e-02	ci right 3.736331e-02	k: 172565	n:4640000
KS ci ratio: 9.916819e-02	ci left: 3.199410e-04	ci right 3.535325e-04	k: 1561	n:4640000
COBL   4640000 perm   9399 sec   (494 perm/sec)   p_kst 3.364224e-04   p_cons 3.719073e-02   p_joint 2.495690e-04

Joint ci ratio: 1.149817e-01	ci left: 2.355219e-04	ci right 2.644612e-04	k: 1161	n:4650000
Cons ci ratio: 9.250121e-03	ci left: 3.701293e-02	ci right 3.735711e-02	k: 172909	n:4650000
KS ci ratio: 9.904145e-02	ci left: 3.200919e-04	ci right 3.536537e-04	k: 1565	n:4650000
COBL   4650000 perm   9437 sec   (493 perm/sec)   p_kst 3.365591e-04   p_cons 3.718473e-02   p_joint 2.496774e-04

Joint ci ratio: 1.149817e-01	ci left: 2.350165e-04	ci right 2.638937e-04	k: 1161	n:4660000
Cons ci ratio: 9.238525e-03	ci left: 3.702600e-02	ci right 3.736986e-02	k: 173341	n:4660000
KS ci ratio: 9.894672e-02	ci left: 3.200328e-04	ci right 3.535545e-04	k: 1568	n:4660000
COBL   4660000 perm   9476 sec   (492 perm/sec)   p_kst 3.364807e-04   p_cons 3.719764e-02   p_joint 2.491416e-04

Joint ci ratio: 1.147843e-01	ci left: 2.353452e-04	ci right 2.642097e-04	k: 1165	n:4670000
Cons ci ratio: 9.228324e-03	ci left: 3.702854e-02	ci right 3.737204e-02	k: 173724	n:4670000
KS ci ratio: 9.888374e-02	ci left: 3.197652e-04	ci right 3.532363e-04	k: 1570	n:4670000
COBL   4670000 perm   9515 sec   (491 perm/sec)   p_kst 3.361884e-04   p_cons 3.720000e-02   p_joint 2.494647e-04

Joint ci ratio: 1.147351e-01	ci left: 2.350499e-04	ci right 2.638650e-04	k: 1166	n:4680000
Cons ci ratio: 9.218322e-03	ci left: 3.702978e-02	ci right 3.737292e-02	k: 174101	n:4680000
KS ci ratio: 9.872674e-02	ci left: 3.201239e-04	ci right 3.535763e-04	k: 1575	n:4680000
COBL   4680000 perm   9553 sec   (490 perm/sec)   p_kst 3.365385e-04   p_cons 3.720107e-02   p_joint 2.491453e-04

Joint ci ratio: 1.146860e-01	ci left: 2.347558e-04	ci right 2.635217e-04	k: 1167	n:4690000
Cons ci ratio: 9.208216e-03	ci left: 3.703209e-02	ci right 3.737488e-02	k: 174483	n:4690000
KS ci ratio: 9.863291e-02	ci left: 3.200652e-04	ci right 3.534778e-04	k: 1578	n:4690000
COBL   4690000 perm   9592 sec   (489 perm/sec)   p_kst 3.364606e-04   p_cons 3.720320e-02   p_joint 2.488273e-04

Joint ci ratio: 1.145390e-01	ci left: 2.348763e-04	ci right 2.636176e-04	k: 1170	n:4700000
Cons ci ratio: 9.198170e-03	ci left: 3.703418e-02	ci right 3.737660e-02	k: 174864	n:4700000
KS ci ratio: 9.850821e-02	ci left: 3.202143e-04	ci right 3.535978e-04	k: 1582	n:4700000
COBL   4700000 perm   9632 sec   (488 perm/sec)   p_kst 3.365957e-04   p_cons 3.720511e-02   p_joint 2.489362e-04

Joint ci ratio: 1.143926e-01	ci left: 2.349963e-04	ci right 2.637131e-04	k: 1173	n:4710000
Cons ci ratio: 9.188783e-03	ci left: 3.703138e-02	ci right 3.737343e-02	k: 175222	n:4710000
KS ci ratio: 9.838398e-02	ci left: 3.203628e-04	ci right 3.537172e-04	k: 1586	n:4710000
COBL   4710000 perm   9670 sec   (487 perm/sec)   p_kst 3.367304e-04   p_cons 3.720212e-02   p_joint 2.490446e-04

Joint ci ratio: 1.141982e-01	ci left: 2.353217e-04	ci right 2.640260e-04	k: 1177	n:4720000
Cons ci ratio: 9.178854e-03	ci left: 3.703304e-02	ci right 3.737473e-02	k: 175601	n:4720000
KS ci ratio: 9.829112e-02	ci left: 3.203040e-04	ci right 3.536190e-04	k: 1589	n:4720000
COBL   4720000 perm   9709 sec   (486 perm/sec)   p_kst 3.366525e-04   p_cons 3.720360e-02   p_joint 2.493644e-04

Joint ci ratio: 1.141498e-01	ci left: 2.350296e-04	ci right 2.636853e-04	k: 1178	n:4730000
Cons ci ratio: 9.169662e-03	ci left: 3.702920e-02	ci right 3.737052e-02	k: 175954	n:4730000
KS ci ratio: 9.813692e-02	ci left: 3.206580e-04	ci right 3.539545e-04	k: 1594	n:4730000
COBL   4730000 perm   9748 sec   (485 perm/sec)   p_kst 3.369979e-04   p_cons 3.719958e-02   p_joint 2.490486e-04

Joint ci ratio: 1.139566e-01	ci left: 2.353535e-04	ci right 2.639969e-04	k: 1182	n:4740000
Cons ci ratio: 9.160146e-03	ci left: 3.702812e-02	ci right 3.736907e-02	k: 176320	n:4740000
KS ci ratio: 9.813696e-02	ci left: 3.199815e-04	ci right 3.532077e-04	k: 1594	n:4740000
COBL   4740000 perm   9786 sec   (484 perm/sec)   p_kst 3.362869e-04   p_cons 3.719831e-02   p_joint 2.493671e-04

Joint ci ratio: 1.138604e-01	ci left: 2.352671e-04	ci right 2.638742e-04	k: 1184	n:4750000
Cons ci ratio: 9.150552e-03	ci left: 3.702788e-02	ci right 3.736847e-02	k: 176690	n:4750000
KS ci ratio: 9.795287e-02	ci left: 3.205400e-04	ci right 3.537582e-04	k: 1600	n:4750000
COBL   4750000 perm   9826 sec   (483 perm/sec)   p_kst 3.368421e-04   p_cons 3.719789e-02   p_joint 2.492632e-04

Joint ci ratio: 1.138124e-01	ci left: 2.349770e-04	ci right 2.635359e-04	k: 1185	n:4760000
Cons ci ratio: 9.141444e-03	ci left: 3.702408e-02	ci right 3.736429e-02	k: 177043	n:4760000
KS ci ratio: 9.780025e-02	ci left: 3.208913e-04	ci right 3.540912e-04	k: 1605	n:4760000
COBL   4760000 perm   9864 sec   (483 perm/sec)   p_kst 3.371849e-04   p_cons 3.719391e-02   p_joint 2.489496e-04

Joint ci ratio: 1.136209e-01	ci left: 2.352991e-04	ci right 2.638458e-04	k: 1189	n:4770000
Cons ci ratio: 9.131988e-03	ci left: 3.702323e-02	ci right 3.736308e-02	k: 177410	n:4770000
KS ci ratio: 9.773943e-02	ci left: 3.206276e-04	ci right 3.537784e-04	k: 1607	n:4770000
COBL   4770000 perm   9904 sec   (482 perm/sec)   p_kst 3.368973e-04   p_cons 3.719287e-02   p_joint 2.492662e-04

Joint ci ratio: 1.133830e-01	ci left: 2.358231e-04	ci right 2.643696e-04	k: 1194	n:4780000
Cons ci ratio: 9.122349e-03	ci left: 3.702405e-02	ci right 3.736354e-02	k: 177785	n:4780000
KS ci ratio: 9.767871e-02	ci left: 3.203650e-04	ci right 3.534669e-04	k: 1609	n:4780000
COBL   4780000 perm   9943 sec   (481 perm/sec)   p_kst 3.366109e-04   p_cons 3.719351e-02   p_joint 2.497908e-04

Joint ci ratio: 1.132409e-01	ci left: 2.359394e-04	ci right 2.644617e-04	k: 1197	n:4790000
Cons ci ratio: 9.111546e-03	ci left: 3.703424e-02	ci right 3.737342e-02	k: 178205	n:4790000
KS ci ratio: 9.752737e-02	ci left: 3.207146e-04	ci right 3.537983e-04	k: 1614	n:4790000
COBL   4790000 perm   9982 sec   (480 perm/sec)   p_kst 3.369520e-04   p_cons 3.720355e-02   p_joint 2.498956e-04

Joint ci ratio: 1.131465e-01	ci left: 2.358527e-04	ci right 2.643392e-04	k: 1199	n:4800000
Cons ci ratio: 9.102712e-03	ci left: 3.702921e-02	ci right 3.736802e-02	k: 178552	n:4800000
KS ci ratio: 9.746706e-02	ci left: 3.204529e-04	ci right 3.534880e-04	k: 1616	n:4800000
COBL   4800000 perm   10021 sec   (479 perm/sec)   p_kst 3.366667e-04   p_cons 3.719833e-02   p_joint 2.497917e-04

Joint ci ratio: 1.129584e-01	ci left: 2.361705e-04	ci right 2.646447e-04	k: 1203	n:4810000
Cons ci ratio: 9.093984e-03	ci left: 3.702358e-02	ci right 3.736201e-02	k: 178896	n:4810000
KS ci ratio: 9.740685e-02	ci left: 3.201924e-04	ci right 3.531791e-04	k: 1618	n:4810000
COBL   4810000 perm   10060 sec   (478 perm/sec)   p_kst 3.363825e-04   p_cons 3.719252e-02   p_joint 2.501040e-04

Joint ci ratio: 1.128179e-01	ci left: 2.362853e-04	ci right 2.647356e-04	k: 1206	n:4820000
Cons ci ratio: 9.084622e-03	ci left: 3.702315e-02	ci right 3.736123e-02	k: 179265	n:4820000
KS ci ratio: 9.725677e-02	ci left: 3.205402e-04	ci right 3.535089e-04	k: 1623	n:4820000
COBL   4820000 perm   10099 sec   (477 perm/sec)   p_kst 3.367220e-04   p_cons 3.719191e-02   p_joint 2.502075e-04

Joint ci ratio: 1.126314e-01	ci left: 2.366009e-04	ci right 2.650390e-04	k: 1210	n:4830000
Cons ci ratio: 9.075815e-03	ci left: 3.701859e-02	ci right 3.735629e-02	k: 179614	n:4830000
KS ci ratio: 9.710738e-02	ci left: 3.208866e-04	ci right 3.538373e-04	k: 1628	n:4830000
COBL   4830000 perm   10138 sec   (476 perm/sec)   p_kst 3.370600e-04   p_cons 3.718716e-02   p_joint 2.505176e-04

Joint ci ratio: 1.125849e-01	ci left: 2.363129e-04	ci right 2.647039e-04	k: 1211	n:4840000
Cons ci ratio: 9.067843e-03	ci left: 3.700766e-02	ci right 3.734496e-02	k: 179932	n:4840000
KS ci ratio: 9.704784e-02	ci left: 3.206268e-04	ci right 3.535295e-04	k: 1630	n:4840000
COBL   4840000 perm   10178 sec   (476 perm/sec)   p_kst 3.367769e-04   p_cons 3.717603e-02   p_joint 2.502066e-04

Joint ci ratio: 1.124459e-01	ci left: 2.364268e-04	ci right 2.647940e-04	k: 1214	n:4850000
Cons ci ratio: 9.059006e-03	ci left: 3.700376e-02	ci right 3.734071e-02	k: 180284	n:4850000
KS ci ratio: 9.701812e-02	ci left: 3.201669e-04	ci right 3.530118e-04	k: 1631	n:4850000
COBL   4850000 perm   10217 sec   (475 perm/sec)   p_kst 3.362887e-04   p_cons 3.717196e-02   p_joint 2.503093e-04

Joint ci ratio: 1.123073e-01	ci left: 2.365402e-04	ci right 2.648838e-04	k: 1217	n:4860000
Cons ci ratio: 9.048894e-03	ci left: 3.701015e-02	ci right 3.734678e-02	k: 180686	n:4860000
KS ci ratio: 9.695874e-02	ci left: 3.199096e-04	ci right 3.527069e-04	k: 1633	n:4860000
COBL   4860000 perm   10257 sec   (474 perm/sec)   p_kst 3.360082e-04   p_cons 3.717819e-02   p_joint 2.504115e-04

Joint ci ratio: 1.122152e-01	ci left: 2.364537e-04	ci right 2.647621e-04	k: 1219	n:4870000
Cons ci ratio: 9.039126e-03	ci left: 3.701406e-02	ci right 3.735035e-02	k: 181076	n:4870000
KS ci ratio: 9.686986e-02	ci left: 3.198538e-04	ci right 3.526136e-04	k: 1636	n:4870000
COBL   4870000 perm   10296 sec   (473 perm/sec)   p_kst 3.359343e-04   p_cons 3.718193e-02   p_joint 2.503080e-04

Joint ci ratio: 1.119402e-01	ci left: 2.371642e-04	ci right 2.654835e-04	k: 1225	n:4880000
Cons ci ratio: 9.029675e-03	ci left: 3.701570e-02	ci right 3.735165e-02	k: 181455	n:4880000
KS ci ratio: 9.678122e-02	ci left: 3.197982e-04	ci right 3.525207e-04	k: 1639	n:4880000
COBL   4880000 perm   10336 sec   (472 perm/sec)   p_kst 3.358607e-04   p_cons 3.718340e-02   p_joint 2.510246e-04

Joint ci ratio: 1.119403e-01	ci left: 2.366792e-04	ci right 2.649406e-04	k: 1225	n:4890000
Cons ci ratio: 9.020536e-03	ci left: 3.701509e-02	ci right 3.735070e-02	k: 181823	n:4890000
KS ci ratio: 9.663401e-02	ci left: 3.201420e-04	ci right 3.528470e-04	k: 1644	n:4890000
COBL   4890000 perm   10377 sec   (471 perm/sec)   p_kst 3.361963e-04   p_cons 3.718262e-02   p_joint 2.505112e-04

Joint ci ratio: 1.116220e-01	ci left: 2.375848e-04	ci right 2.658684e-04	k: 1232	n:4900000
Cons ci ratio: 9.010654e-03	ci left: 3.702059e-02	ci right 3.735588e-02	k: 182221	n:4900000
KS ci ratio: 9.642903e-02	ci left: 3.208828e-04	ci right 3.535900e-04	k: 1651	n:4900000
COBL   4900000 perm   10417 sec   (470 perm/sec)   p_kst 3.369388e-04   p_cons 3.718796e-02   p_joint 2.514286e-04

Joint ci ratio: 1.115316e-01	ci left: 2.374969e-04	ci right 2.657456e-04	k: 1234	n:4910000
Cons ci ratio: 9.001061e-03	ci left: 3.702404e-02	ci right 3.735900e-02	k: 182609	n:4910000
KS ci ratio: 9.625436e-02	ci left: 3.214218e-04	ci right 3.541212e-04	k: 1657	n:4910000
COBL   4910000 perm   10457 sec   (470 perm/sec)   p_kst 3.374745e-04   p_cons 3.719124e-02   p_joint 2.513238e-04

Joint ci ratio: 1.114414e-01	ci left: 2.374093e-04	ci right 2.656233e-04	k: 1236	n:4920000
Cons ci ratio: 8.991881e-03	ci left: 3.702443e-02	ci right 3.735905e-02	k: 182982	n:4920000
KS ci ratio: 9.616740e-02	ci left: 3.213636e-04	ci right 3.540259e-04	k: 1660	n:4920000
COBL   4920000 perm   10498 sec   (469 perm/sec)   p_kst 3.373984e-04   p_cons 3.719146e-02   p_joint 2.512195e-04

Joint ci ratio: 1.112616e-01	ci left: 2.377165e-04	ci right 2.659185e-04	k: 1240	n:4930000
Cons ci ratio: 8.982068e-03	ci left: 3.703008e-02	ci right 3.736438e-02	k: 183381	n:4930000
KS ci ratio: 9.608068e-02	ci left: 3.213056e-04	ci right 3.539309e-04	k: 1663	n:4930000
COBL   4930000 perm   10539 sec   (468 perm/sec)   p_kst 3.373225e-04   p_cons 3.719696e-02   p_joint 2.515213e-04

Joint ci ratio: 1.111721e-01	ci left: 2.376289e-04	ci right 2.657963e-04	k: 1242	n:4940000
Cons ci ratio: 8.972313e-03	ci left: 3.703550e-02	ci right 3.736949e-02	k: 183779	n:4940000
KS ci ratio: 9.593663e-02	ci left: 3.216431e-04	ci right 3.542509e-04	k: 1668	n:4940000
COBL   4940000 perm   10578 sec   (467 perm/sec)   p_kst 3.376518e-04   p_cons 3.720223e-02   p_joint 2.514170e-04

Joint ci ratio: 1.111274e-01	ci left: 2.373453e-04	ci right 2.654670e-04	k: 1243	n:4950000
Cons ci ratio: 8.962260e-03	ci left: 3.704353e-02	ci right 3.737721e-02	k: 184190	n:4950000
KS ci ratio: 9.590793e-02	ci left: 3.211904e-04	ci right 3.537421e-04	k: 1669	n:4950000
COBL   4950000 perm   10619 sec   (466 perm/sec)   p_kst 3.371717e-04   p_cons 3.721010e-02   p_joint 2.511111e-04

Joint ci ratio: 1.110828e-01	ci left: 2.370628e-04	ci right 2.651390e-04	k: 1244	n:4960000
Cons ci ratio: 8.953274e-03	ci left: 3.704328e-02	ci right 3.737662e-02	k: 184560	n:4960000
KS ci ratio: 9.582190e-02	ci left: 3.211332e-04	ci right 3.536483e-04	k: 1672	n:4960000
COBL   4960000 perm   10659 sec   (465 perm/sec)   p_kst 3.370968e-04   p_cons 3.720968e-02   p_joint 2.508065e-04

Joint ci ratio: 1.109492e-01	ci left: 2.371726e-04	ci right 2.652259e-04	k: 1247	n:4970000
Cons ci ratio: 8.945094e-03	ci left: 3.703680e-02	ci right 3.736978e-02	k: 184899	n:4970000
KS ci ratio: 9.573611e-02	ci left: 3.210762e-04	ci right 3.535548e-04	k: 1675	n:4970000
COBL   4970000 perm   10699 sec   (465 perm/sec)   p_kst 3.370221e-04   p_cons 3.720302e-02   p_joint 2.509054e-04

Joint ci ratio: 1.108161e-01	ci left: 2.372821e-04	ci right 2.653124e-04	k: 1250	n:4980000
Cons ci ratio: 8.935933e-03	ci left: 3.703836e-02	ci right 3.737101e-02	k: 185278	n:4980000
KS ci ratio: 9.562206e-02	ci left: 3.212155e-04	ci right 3.536673e-04	k: 1679	n:4980000
COBL   4980000 perm   10741 sec   (464 perm/sec)   p_kst 3.371486e-04   p_cons 3.720442e-02   p_joint 2.510040e-04

Joint ci ratio: 1.106834e-01	ci left: 2.373911e-04	ci right 2.653985e-04	k: 1253	n:4990000
Cons ci ratio: 8.927900e-03	ci left: 3.703112e-02	ci right 3.736341e-02	k: 185613	n:4990000
KS ci ratio: 9.545174e-02	ci left: 3.217455e-04	ci right 3.541896e-04	k: 1685	n:4990000
COBL   4990000 perm   10781 sec   (463 perm/sec)   p_kst 3.376754e-04   p_cons 3.719699e-02   p_joint 2.511022e-04

Joint ci ratio: 1.105513e-01	ci left: 2.374997e-04	ci right 2.654843e-04	k: 1256	n:5000000
Cons ci ratio: 8.919092e-03	ci left: 3.703029e-02	ci right 3.736224e-02	k: 185980	n:5000000
KS ci ratio: 9.525417e-02	ci left: 3.224686e-04	ci right 3.549146e-04	k: 1692	n:5000000
COBL   5000000 perm   10822 sec   (462 perm/sec)   p_kst 3.384000e-04   p_cons 3.719600e-02   p_joint 2.512000e-04

Outputting figure to mutsig2_images.part000000000040/COBL.2_3838_5000000_0.0003384_0.037196_0.0002512.png
                gene_name: COBL
               theta_stop: 0.11 
                    nperm: 5000000 
                     p_ks: 0.00034 
        ci_ks_bounds_left: 0.00032 
       ci_ks_bounds_right: 0.00035 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.037 
                  p_joint: 0.00025 
     ci_joint_bounds_left: 0.00024 
    ci_joint_bounds_right: 0.00027 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000040
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 40 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 9877021: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000041> was used as the working directory.
Started at Fri Oct  5 22:35:19 2012
Results reported at Fri Oct  5 22:37:06 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000041.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000041.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 41  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000041.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     98.59 sec.
    Max Memory :      2258 MB
    Max Swap   :      4695 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
41
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 41
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 41: processing genes 3628 - 3717
Calculating significance of each gene.
Using projection method.
3628	COG6	1
3629	COG7	1
3630	COG8	1
3631	COIL	6.408377e-02
3632	COL10A1	1
3633	COL11A1	2.859255e-01
3634	COL11A2	7.280853e-02
3635	COL12A1	1
3636	COL13A1	1
3637	COL14A1	1
3638	COL15A1	1
3639	COL16A1	2.077835e-01
3640	COL17A1	1.787392e-01
3641	COL18A1	1
3642	COL19A1	1
3643	COL1A1	1
3644	COL1A2	1
3645	COL20A1	1
3646	COL21A1	7.741532e-03
3647	COL22A1	7.327402e-02
3648	COL23A1	1
3649	COL24A1	1
3650	COL25A1	1
3651	COL27A1	1.660838e-01
3652	COL28A1	1
3653	COL2A1	1
3654	COL3A1	2.298554e-02
3655	COL4A1	1
In gene COL4A2 the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 4826    n = 1	mu =   9.08e-07
3656	COL4A2	4.446107e-01
3657	COL4A3	1
3658	COL4A3BP	1
3659	COL4A4	1
3660	COL4A5	1
3661	COL4A6	1
3662	COL5A1	1
3663	COL5A2	3.695240e-01
3664	COL5A3	2.483174e-01
3665	COL6A1	3.203035e-01
3666	COL6A2	1
3667	COL6A3	3.827487e-01
3668	COL6A5	1
3669	COL6A6	1
3670	COL7A1	1
3671	COL8A1	1
In gene COL8A2 the following bins exceed PROBCAP:
    PRAD-CH-5765	categ 6	N = 1404    n = 1	mu =   3.34e-07
3672	COL8A2	5.642691e-03
3673	COL9A1	1
3674	COL9A2	1.031501e-01
3675	COL9A3	1
3676	COLEC10	1
3677	COLEC11	1
3678	COLEC12	1
3679	COLQ	1
3680	COMMD1	1
3681	COMMD10	1
3682	COMMD2	1
3683	COMMD3	1
3684	COMMD4	6.998648e-03
3685	COMMD5	1
3686	COMMD6	1
3687	COMMD7	1
3688	COMMD8	1
3689	COMMD9	1
3690	COMP	1
3691	COMT	1
3692	COMTD1	1
3693	COPA	1.600262e-01
3694	COPB1	1
3695	COPB2	1
3696	COPE	1
3697	COPG	1.797192e-01
3698	COPG2	1
3699	COPS2	1
3700	COPS3	1
3701	COPS4	1
3702	COPS5	1
3703	COPS6	1
3704	COPS7A	1
3705	COPS7B	1
3706	COPS8	1
3707	COPZ1	1
3708	COPZ2	1
3709	COQ10A	1
3710	COQ10B	1
3711	COQ2	1
3712	COQ3	1
3713	COQ4	1
3714	COQ5	1
3715	COQ6	1
3716	COQ7	1
3717	COQ9	1
Done

Running MutSig 2:
Scatter job 41: processing genes 3628 - 3717
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
COL11A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.512986e-01	ci left: 5.812294e-02	ci right 6.773362e-02	k: 628	n:10000
Cons ci ratio: 2.031327e-01	ci left: 3.224430e-02	ci right 3.962922e-02	k: 358	n:10000
KS ci ratio: 7.660662e-02	ci left: 1.994895e-01	ci right 2.154812e-01	k: 2074	n:10000
COL11A2   10000 perm   2 sec   (5442 perm/sec)   p_kst 2.074000e-01   p_cons 3.580000e-02   p_joint 6.280000e-02

Joint ci ratio: 1.449005e-01	ci left: 3.273699e-02	ci right 3.789925e-02	k: 705	n:20000
Cons ci ratio: 1.443714e-01	ci left: 3.297824e-02	ci right 3.815792e-02	k: 710	n:20000
KS ci ratio: 5.418618e-02	ci left: 2.017493e-01	ci right 2.130359e-01	k: 4147	n:20000
COL11A2   20000 perm   6 sec   (3200 perm/sec)   p_kst 2.073500e-01   p_cons 3.550000e-02   p_joint 3.525000e-02

Joint ci ratio: 1.315815e-01	ci left: 2.683976e-02	ci right 3.065223e-02	k: 861	n:30000
Cons ci ratio: 1.159489e-01	ci left: 3.456824e-02	ci right 3.885541e-02	k: 1100	n:30000
KS ci ratio: 4.442323e-02	ci left: 2.014685e-01	ci right 2.106551e-01	k: 6181	n:30000
COL11A2   30000 perm   9 sec   (3359 perm/sec)   p_kst 2.060333e-01   p_cons 3.666667e-02   p_joint 2.870000e-02

Joint ci ratio: 1.005574e-01	ci left: 3.475662e-02	ci right 3.846104e-02	k: 1463	n:40000
Cons ci ratio: 9.848125e-02	ci left: 3.622063e-02	ci right 3.999680e-02	k: 1523	n:40000
KS ci ratio: 3.854142e-02	ci left: 2.014996e-01	ci right 2.094432e-01	k: 8218	n:40000
COL11A2   40000 perm   11 sec   (3557 perm/sec)   p_kst 2.054500e-01   p_cons 3.807500e-02   p_joint 3.657500e-02

Joint ci ratio: 9.161748e-02	ci left: 3.369952e-02	ci right 3.695472e-02	k: 1765	n:50000
Cons ci ratio: 8.891266e-02	ci left: 3.575379e-02	ci right 3.910019e-02	k: 1870	n:50000
KS ci ratio: 3.452700e-02	ci left: 2.014091e-01	ci right 2.085052e-01	k: 10247	n:50000
COL11A2   50000 perm   14 sec   (3665 perm/sec)   p_kst 2.049400e-01   p_cons 3.740000e-02   p_joint 3.530000e-02

Outputting figure to mutsig2_images.part000000000041/COL11A2.2_5550_50000_0.20494_0.0374_0.0353.png
                gene_name: COL11A2
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.039 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.037 

Current progress: 17 percent done.
COL21A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.798050e-02	ci left: 8.186283e-01	ci right 8.335812e-01	k: 8262	n:10000
KS ci ratio: 1.774222e-02	ci left: 8.224919e-01	ci right 8.373154e-01	k: 8300	n:10000
COL21A1   10000 perm   2 sec   (6555 perm/sec)   p_kst 8.300000e-01   p_cons 8.262000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000041/COL21A1.2_2990_10000_0.83_0.8262_1.png
                gene_name: COL21A1
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
COL22A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.306825e-02	ci left: 4.432085e-01	ci right 4.628189e-01	k: 4530	n:10000
Cons ci ratio: 3.118285e-02	ci left: 6.027694e-01	ci right 6.219651e-01	k: 6124	n:10000
KS ci ratio: 1.042345e-01	ci left: 1.174050e-01	ci right 1.304149e-01	k: 1238	n:10000
COL22A1   10000 perm   2 sec   (5727 perm/sec)   p_kst 1.238000e-01   p_cons 6.124000e-01   p_joint 4.530000e-01

Joint ci ratio: 1.768446e-02	ci left: 7.043605e-01	ci right 7.169782e-01	k: 14214	n:20000
Cons ci ratio: 2.129373e-02	ci left: 6.221112e-01	ci right 6.355513e-01	k: 12577	n:20000
KS ci ratio: 7.467253e-02	ci left: 1.165597e-01	ci right 1.256508e-01	k: 2421	n:20000
COL22A1   20000 perm   4 sec   (5184 perm/sec)   p_kst 1.210500e-01   p_cons 6.288500e-01   p_joint 7.107000e-01

Outputting figure to mutsig2_images.part000000000041/COL22A1.2_5137_20000_0.12105_0.62885_0.7107.png
                gene_name: COL22A1
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 50 percent done.
COL3A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.806805e-02	ci left: 8.172052e-01	ci right 8.322052e-01	k: 8248	n:10000
KS ci ratio: 9.962467e-03	ci left: 9.345442e-01	ci right 9.439979e-01	k: 9394	n:10000
COL3A1   10000 perm   2 sec   (5847 perm/sec)   p_kst 9.394000e-01   p_cons 8.248000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000041/COL3A1.2_4605_10000_0.9394_0.8248_1.png
                gene_name: COL3A1
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
COL6A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.935483e-01	ci left: 3.557635e-02	ci right 4.329490e-02	k: 393	n:10000
Cons ci ratio: 1.994172e-01	ci left: 3.348089e-02	ci right 4.099178e-02	k: 371	n:10000
KS ci ratio: 7.293884e-02	ci left: 2.158598e-01	ci right 2.323013e-01	k: 2240	n:10000
COL6A3   10000 perm   2 sec   (4559 perm/sec)   p_kst 2.240000e-01   p_cons 3.710000e-02   p_joint 3.930000e-02

Joint ci ratio: 1.553563e-01	ci left: 2.844890e-02	ci right 3.328876e-02	k: 616	n:20000
Cons ci ratio: 1.392719e-01	ci left: 3.544087e-02	ci right 4.079449e-02	k: 761	n:20000
KS ci ratio: 5.141350e-02	ci left: 2.193766e-01	ci right 2.310034e-01	k: 4503	n:20000
COL6A3   20000 perm   5 sec   (4191 perm/sec)   p_kst 2.251500e-01   p_cons 3.805000e-02   p_joint 3.080000e-02

Joint ci ratio: 1.025218e-01	ci left: 4.407958e-02	ci right 4.887540e-02	k: 1393	n:30000
Cons ci ratio: 1.161681e-01	ci left: 3.443865e-02	ci right 3.871837e-02	k: 1096	n:30000
KS ci ratio: 4.210781e-02	ci left: 2.193916e-01	ci right 2.288618e-01	k: 6723	n:30000
COL6A3   30000 perm   8 sec   (3957 perm/sec)   p_kst 2.241000e-01   p_cons 3.653333e-02   p_joint 4.643333e-02

Joint ci ratio: 8.112598e-02	ci left: 5.290830e-02	ci right 5.740655e-02	k: 2205	n:40000
Cons ci ratio: 1.009517e-01	ci left: 3.448831e-02	ci right 3.817940e-02	k: 1452	n:40000
KS ci ratio: 3.674749e-02	ci left: 2.173887e-01	ci right 2.255517e-01	k: 8858	n:40000
COL6A3   40000 perm   10 sec   (3894 perm/sec)   p_kst 2.214500e-01   p_cons 3.630000e-02   p_joint 5.512500e-02

Joint ci ratio: 7.888673e-02	ci left: 4.520053e-02	ci right 4.893228e-02	k: 2352	n:50000
Cons ci ratio: 9.063776e-02	ci left: 3.442323e-02	ci right 3.771091e-02	k: 1802	n:50000
KS ci ratio: 3.279335e-02	ci left: 2.186020e-01	ci right 2.259102e-01	k: 11112	n:50000
COL6A3   50000 perm   13 sec   (3835 perm/sec)   p_kst 2.222400e-01   p_cons 3.604000e-02   p_joint 4.704000e-02

Outputting figure to mutsig2_images.part000000000041/COL6A3.2_9753_50000_0.22224_0.03604_0.04704.png
                gene_name: COL6A3
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.034 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.047 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.049 

Current progress: 83 percent done.
COL8A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.612609e-02	ci left: 1.641585e-01	ci right 1.790334e-01	k: 1715	n:10000
Cons ci ratio: 9.069448e-02	ci left: 1.502147e-01	ci right 1.645855e-01	k: 1573	n:10000
KS ci ratio: 6.732082e-02	ci left: 2.446012e-01	ci right 2.617428e-01	k: 2531	n:10000
COL8A2   10000 perm   1 sec   (7055 perm/sec)   p_kst 2.531000e-01   p_cons 1.573000e-01   p_joint 1.715000e-01

Outputting figure to mutsig2_images.part000000000041/COL8A2.2_2120_10000_0.2531_0.1573_0.1715.png
                gene_name: COL8A2
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.18 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000041
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 41 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1647>
Subject: Job 9877023: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1647>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000042> was used as the working directory.
Started at Fri Oct  5 22:35:31 2012
Results reported at Fri Oct  5 22:39:30 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000042.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000042.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 42  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000042.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    255.60 sec.
    Max Memory :      2057 MB
    Max Swap   :      4715 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
42
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 42
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 42: processing genes 3718 - 3808
Calculating significance of each gene.
Using projection method.
3718	CORIN	7.824472e-02
3719	CORO1A	1
3720	CORO1B	1
3721	CORO1C	1
3722	CORO2A	1
3723	CORO2B	1
3724	CORO6	1
3725	CORO7	1
3726	CORT	1
3727	COTL1	1
3728	COX10	1
3729	COX11	1
3730	COX15	1
3731	COX16	1
3732	COX17	1
3733	COX18	1
3734	COX19	1
3735	COX4I1	1
3736	COX4I2	1
3737	COX4NB	1
3738	COX5A	1
3739	COX5B	1
3740	COX6A1	1
3741	COX6A2	1
3742	COX6B1	1
3743	COX6B2	1
3744	COX6C	1
3745	COX7A1	1
3746	COX7A2	1
3747	COX7A2L	1
3748	COX7B	1
3749	COX7B2	1
3750	COX7C	1
3751	COX8A	1
3752	COX8C	1
3753	CP	1.403552e-01
3754	CP110	1
3755	CPA1	1
3756	CPA2	1
3757	CPA3	1
3758	CPA4	1
3759	CPA5	1
3760	CPA6	1
3761	CPAMD8	3.709065e-01
3762	CPB1	1
3763	CPB2	1
3764	CPD	1
3765	CPE	1.188515e-01
3766	CPEB1	1
3767	CPEB2	1
3768	CPEB3	1
In gene CPEB4 the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 2230    n = 1	mu =   9.08e-07
3769	CPEB4	2.262350e-03
3770	CPLX1	1
3771	CPLX2	1
3772	CPLX3	1
3773	CPLX4	1
3774	CPM	1
3775	CPN1	1
3776	CPN2	1
3777	CPNE1	1
3778	CPNE2	1
3779	CPNE3	9.819463e-03
3780	CPNE4	1
3781	CPNE5	1
3782	CPNE6	1
3783	CPNE7	1
3784	CPNE8	1
3785	CPNE9	1
3786	CPO	1
3787	CPOX	1.159310e-01
3788	CPPED1	1
3789	CPS1	1
3790	CPSF1	1
In gene CPSF2 the following bins exceed PROBCAP:
    PRAD-CH-5789	categ 6	N = 2405    n = 1	mu =   1.98e-07
3791	CPSF2	6.700812e-02
3792	CPSF3	1
3793	CPSF3L	1
3794	CPSF4	1
3795	CPSF6	1
3796	CPSF7	1
3797	CPT1A	1
3798	CPT1B	1
3799	CPT1C	1
3800	CPT2	1
3801	CPVL	1
3802	CPXCR1	1
3803	CPXM1	1
3804	CPXM2	2.107273e-01
3805	CPZ	1
3806	CR1	3.557168e-02
3807	CR1L	1.862133e-02
3808	CR2	1
Done

Running MutSig 2:
Scatter job 42: processing genes 3718 - 3808
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CPEB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.750450e-02	ci left: 3.953575e-01	ci right 4.146978e-01	k: 4050	n:10000
Cons ci ratio: 5.542886e-04	ci left: 9.994430e-01	ci right 9.999975e-01	k: 9999	n:10000
KS ci ratio: 9.553251e-02	ci left: 1.371732e-01	ci right 1.510349e-01	k: 1440	n:10000
CPEB4   10000 perm   2 sec   (4508 perm/sec)   p_kst 1.440000e-01   p_cons 9.999000e-01   p_joint 4.050000e-01

Outputting figure to mutsig2_images.part000000000042/CPEB4.3_2230_10000_0.144_0.9999_0.405.png
                gene_name: CPEB4
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 25 percent done.
CPNE3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.554752e-01	ci left: 2.005779e-02	ci right 2.602453e-02	k: 229	n:10000
Cons ci ratio: 5.112967e-02	ci left: 3.606257e-01	ci right 3.796501e-01	k: 3701	n:10000
KS ci ratio: 5.003467e-01	ci left: 4.581663e-03	ci right 7.716529e-03	k: 60	n:10000
CPNE3   10000 perm   2 sec   (6459 perm/sec)   p_kst 6.000000e-03   p_cons 3.701000e-01   p_joint 2.290000e-02

Joint ci ratio: 1.454352e-01	ci left: 3.249578e-02	ci right 3.764054e-02	k: 700	n:20000
Cons ci ratio: 3.635250e-02	ci left: 3.609125e-01	ci right 3.743260e-01	k: 7352	n:20000
KS ci ratio: 3.744341e-01	ci left: 4.431766e-03	ci right 6.515982e-03	k: 108	n:20000
CPNE3   20000 perm   4 sec   (5575 perm/sec)   p_kst 5.400000e-03   p_cons 3.676000e-01   p_joint 3.500000e-02

Joint ci ratio: 6.266004e-02	ci left: 1.117724e-01	ci right 1.190356e-01	k: 3461	n:30000
Cons ci ratio: 2.954701e-02	ci left: 3.642670e-01	ci right 3.752249e-01	k: 11092	n:30000
KS ci ratio: 2.997923e-01	ci left: 4.817905e-03	ci right 6.546609e-03	k: 169	n:30000
CPNE3   30000 perm   6 sec   (5364 perm/sec)   p_kst 5.633333e-03   p_cons 3.697333e-01   p_joint 1.153667e-01

Joint ci ratio: 1.599124e-01	ci left: 1.361547e-02	ci right 1.600573e-02	k: 591	n:40000
Cons ci ratio: 2.553181e-02	ci left: 3.660386e-01	ci right 3.755302e-01	k: 14831	n:40000
KS ci ratio: 2.611784e-01	ci left: 4.868911e-03	ci right 6.354248e-03	k: 223	n:40000
CPNE3   40000 perm   8 sec   (5233 perm/sec)   p_kst 5.575000e-03   p_cons 3.707750e-01   p_joint 1.477500e-02

Joint ci ratio: 4.854601e-02	ci left: 1.125525e-01	ci right 1.181722e-01	k: 5767	n:50000
Cons ci ratio: 2.280504e-02	ci left: 3.671823e-01	ci right 3.756726e-01	k: 18571	n:50000
KS ci ratio: 2.340263e-01	ci left: 4.927077e-03	ci right 6.251319e-03	k: 278	n:50000
CPNE3   50000 perm   10 sec   (5050 perm/sec)   p_kst 5.560000e-03   p_cons 3.714200e-01   p_joint 1.153400e-01

Joint ci ratio: 4.436921e-02	ci left: 1.125567e-01	ci right 1.176806e-01	k: 6906	n:60000
Cons ci ratio: 2.081018e-02	ci left: 3.677314e-01	ci right 3.754811e-01	k: 22296	n:60000
KS ci ratio: 2.199340e-01	ci left: 4.687462e-03	ci right 5.861174e-03	k: 315	n:60000
CPNE3   60000 perm   12 sec   (4918 perm/sec)   p_kst 5.250000e-03   p_cons 3.716000e-01   p_joint 1.151000e-01

Joint ci ratio: 1.177497e-01	ci left: 1.466723e-02	ci right 1.651610e-02	k: 1090	n:70000
Cons ci ratio: 1.924420e-02	ci left: 3.685602e-01	ci right 3.757361e-01	k: 26050	n:70000
KS ci ratio: 2.000152e-01	ci left: 4.911258e-03	ci right 6.016058e-03	k: 381	n:70000
CPNE3   70000 perm   15 sec   (4785 perm/sec)   p_kst 5.442857e-03   p_cons 3.721429e-01   p_joint 1.557143e-02

Joint ci ratio: 1.104990e-01	ci left: 1.463103e-02	ci right 1.635437e-02	k: 1238	n:80000
Cons ci ratio: 1.803871e-02	ci left: 3.678257e-01	ci right 3.745337e-01	k: 29694	n:80000
KS ci ratio: 1.878715e-01	ci left: 4.903917e-03	ci right 5.932450e-03	k: 432	n:80000
CPNE3   80000 perm   17 sec   (4695 perm/sec)   p_kst 5.400000e-03   p_cons 3.711750e-01   p_joint 1.547500e-02

Joint ci ratio: 1.047102e-01	ci left: 1.452984e-02	ci right 1.614607e-02	k: 1379	n:90000
Cons ci ratio: 1.700822e-02	ci left: 3.679868e-01	ci right 3.743104e-01	k: 33403	n:90000
KS ci ratio: 1.775168e-01	ci left: 4.910409e-03	ci right 5.877447e-03	k: 484	n:90000
CPNE3   90000 perm   20 sec   (4587 perm/sec)   p_kst 5.377778e-03   p_cons 3.711444e-01   p_joint 1.532222e-02

Joint ci ratio: 3.445067e-02	ci left: 1.126518e-01	ci right 1.166106e-01	k: 11462	n:100000
Cons ci ratio: 1.613353e-02	ci left: 3.682044e-01	ci right 3.742031e-01	k: 37120	n:100000
KS ci ratio: 1.698213e-01	ci left: 4.849800e-03	ci right 5.759256e-03	k: 529	n:100000
CPNE3   100000 perm   22 sec   (4489 perm/sec)   p_kst 5.290000e-03   p_cons 3.712000e-01   p_joint 1.146200e-01

Joint ci ratio: 3.285524e-02	ci left: 1.126961e-01	ci right 1.164697e-01	k: 12603	n:110000
Cons ci ratio: 1.539444e-02	ci left: 3.679899e-01	ci right 3.737079e-01	k: 40793	n:110000
KS ci ratio: 1.631895e-01	ci left: 4.792233e-03	ci right 5.652353e-03	k: 573	n:110000
CPNE3   110000 perm   25 sec   (4403 perm/sec)   p_kst 5.209091e-03   p_cons 3.708455e-01   p_joint 1.145727e-01

Joint ci ratio: 3.136873e-02	ci left: 1.133408e-01	ci right 1.169611e-01	k: 13817	n:120000
Cons ci ratio: 1.473235e-02	ci left: 3.683240e-01	ci right 3.737989e-01	k: 44527	n:120000
KS ci ratio: 1.557654e-01	ci left: 4.840939e-03	ci right 5.666582e-03	k: 629	n:120000
CPNE3   120000 perm   28 sec   (4334 perm/sec)   p_kst 5.241667e-03   p_cons 3.710583e-01   p_joint 1.151417e-01

Joint ci ratio: 3.015462e-02	ci left: 1.133011e-01	ci right 1.167776e-01	k: 14954	n:130000
Cons ci ratio: 1.415664e-02	ci left: 3.683577e-01	ci right 3.736173e-01	k: 48228	n:130000
KS ci ratio: 1.504881e-01	ci left: 4.801444e-03	ci right 5.590106e-03	k: 674	n:130000
CPNE3   130000 perm   30 sec   (4266 perm/sec)   p_kst 5.184615e-03   p_cons 3.709846e-01   p_joint 1.150308e-01

Joint ci ratio: 2.904589e-02	ci left: 1.134469e-01	ci right 1.167977e-01	k: 16116	n:140000
Cons ci ratio: 1.363207e-02	ci left: 3.687825e-01	ci right 3.738514e-01	k: 51984	n:140000
KS ci ratio: 1.441123e-01	ci left: 4.878157e-03	ci right 5.642554e-03	k: 735	n:140000
CPNE3   140000 perm   33 sec   (4206 perm/sec)   p_kst 5.250000e-03   p_cons 3.713143e-01   p_joint 1.151143e-01

Joint ci ratio: 2.803735e-02	ci left: 1.136746e-01	ci right 1.169136e-01	k: 17293	n:150000
Cons ci ratio: 1.315671e-02	ci left: 3.693335e-01	ci right 3.742315e-01	k: 55767	n:150000
KS ci ratio: 1.386587e-01	ci left: 4.932379e-03	ci right 5.673607e-03	k: 794	n:150000
CPNE3   150000 perm   36 sec   (4148 perm/sec)   p_kst 5.293333e-03   p_cons 3.717800e-01   p_joint 1.152867e-01

Joint ci ratio: 2.716031e-02	ci left: 1.136271e-01	ci right 1.167619e-01	k: 18430	n:160000
Cons ci ratio: 1.274743e-02	ci left: 3.691003e-01	ci right 3.738418e-01	k: 59435	n:160000
KS ci ratio: 1.331552e-01	ci left: 5.028637e-03	ci right 5.751963e-03	k: 861	n:160000
CPNE3   160000 perm   39 sec   (4091 perm/sec)   p_kst 5.381250e-03   p_cons 3.714688e-01   p_joint 1.151875e-01

Joint ci ratio: 2.632654e-02	ci left: 1.138497e-01	ci right 1.168928e-01	k: 19612	n:170000
Cons ci ratio: 1.236476e-02	ci left: 3.692493e-01	ci right 3.738492e-01	k: 63163	n:170000
KS ci ratio: 1.289585e-01	ci left: 5.057142e-03	ci right 5.759887e-03	k: 918	n:170000
CPNE3   170000 perm   42 sec   (4035 perm/sec)   p_kst 5.400000e-03   p_cons 3.715471e-01   p_joint 1.153647e-01

Joint ci ratio: 2.556651e-02	ci left: 1.140379e-01	ci right 1.169967e-01	k: 20792	n:180000
Cons ci ratio: 1.202219e-02	ci left: 3.690895e-01	ci right 3.735591e-01	k: 66838	n:180000
KS ci ratio: 1.248141e-01	ci left: 5.109711e-03	ci right 5.795254e-03	k: 980	n:180000
CPNE3   180000 perm   45 sec   (3978 perm/sec)   p_kst 5.444444e-03   p_cons 3.713222e-01   p_joint 1.155111e-01

Joint ci ratio: 2.491296e-02	ci left: 1.138462e-01	ci right 1.167234e-01	k: 21903	n:190000
Cons ci ratio: 1.170474e-02	ci left: 3.690217e-01	ci right 3.733717e-01	k: 70527	n:190000
KS ci ratio: 1.214557e-01	ci left: 5.121338e-03	ci right 5.788624e-03	k: 1035	n:190000
CPNE3   190000 perm   49 sec   (3917 perm/sec)   p_kst 5.447368e-03   p_cons 3.711947e-01   p_joint 1.152789e-01

Joint ci ratio: 2.426007e-02	ci left: 1.140675e-01	ci right 1.168737e-01	k: 23093	n:200000
Cons ci ratio: 1.141228e-02	ci left: 3.689172e-01	ci right 3.731565e-01	k: 74207	n:200000
KS ci ratio: 1.177054e-01	ci left: 5.190263e-03	ci right 5.844195e-03	k: 1102	n:200000
CPNE3   200000 perm   52 sec   (3856 perm/sec)   p_kst 5.510000e-03   p_cons 3.710350e-01   p_joint 1.154650e-01

Joint ci ratio: 2.362570e-02	ci left: 1.145291e-01	ci right 1.172720e-01	k: 24338	n:210000
Cons ci ratio: 1.112843e-02	ci left: 3.693376e-01	ci right 3.734755e-01	k: 77995	n:210000
KS ci ratio: 1.143806e-01	ci left: 5.243656e-03	ci right 5.884394e-03	k: 1167	n:210000
CPNE3   210000 perm   55 sec   (3794 perm/sec)   p_kst 5.557143e-03   p_cons 3.714048e-01   p_joint 1.158952e-01

Joint ci ratio: 2.307176e-02	ci left: 1.146556e-01	ci right 1.173363e-01	k: 25518	n:220000
Cons ci ratio: 1.087788e-02	ci left: 3.691579e-01	ci right 3.732000e-01	k: 81659	n:220000
KS ci ratio: 1.116875e-01	ci left: 5.257076e-03	ci right 5.883332e-03	k: 1224	n:220000
CPNE3   220000 perm   59 sec   (3722 perm/sec)   p_kst 5.563636e-03   p_cons 3.711773e-01   p_joint 1.159909e-01

Joint ci ratio: 2.255075e-02	ci left: 1.148108e-01	ci right 1.174337e-01	k: 26707	n:230000
Cons ci ratio: 1.063430e-02	ci left: 3.693987e-01	ci right 3.733523e-01	k: 85416	n:230000
KS ci ratio: 1.091760e-01	ci left: 5.269490e-03	ci right 5.882202e-03	k: 1281	n:230000
CPNE3   230000 perm   63 sec   (3664 perm/sec)   p_kst 5.569565e-03   p_cons 3.713739e-01   p_joint 1.161174e-01

Joint ci ratio: 2.208052e-02	ci left: 1.147961e-01	ci right 1.173632e-01	k: 27858	n:240000
Cons ci ratio: 1.041344e-02	ci left: 3.693041e-01	ci right 3.731740e-01	k: 89097	n:240000
KS ci ratio: 1.069071e-01	ci left: 5.272902e-03	ci right 5.872467e-03	k: 1336	n:240000
CPNE3   240000 perm   67 sec   (3606 perm/sec)   p_kst 5.566667e-03   p_cons 3.712375e-01   p_joint 1.160750e-01

Joint ci ratio: 2.166008e-02	ci left: 1.145800e-01	ci right 1.170929e-01	k: 28958	n:250000
Cons ci ratio: 1.020876e-02	ci left: 3.690819e-01	ci right 3.728731e-01	k: 92744	n:250000
KS ci ratio: 1.054618e-01	ci left: 5.206046e-03	ci right 5.789509e-03	k: 1373	n:250000
CPNE3   250000 perm   70 sec   (3554 perm/sec)   p_kst 5.492000e-03   p_cons 3.709760e-01   p_joint 1.158320e-01

Joint ci ratio: 2.124239e-02	ci left: 1.145762e-01	ci right 1.170400e-01	k: 30109	n:260000
Cons ci ratio: 1.001289e-02	ci left: 3.690082e-01	ci right 3.727254e-01	k: 96425	n:260000
KS ci ratio: 1.029785e-01	ci left: 5.256796e-03	ci right 5.831234e-03	k: 1440	n:260000
CPNE3   260000 perm   75 sec   (3488 perm/sec)   p_kst 5.538462e-03   p_cons 3.708654e-01   p_joint 1.158038e-01

Joint ci ratio: 2.084383e-02	ci left: 1.146137e-01	ci right 1.170315e-01	k: 31271	n:270000
Cons ci ratio: 9.828816e-03	ci left: 3.688962e-01	ci right 3.725436e-01	k: 100094	n:270000
KS ci ratio: 1.014092e-01	ci left: 5.224502e-03	ci right 5.786193e-03	k: 1485	n:270000
CPNE3   270000 perm   79 sec   (3436 perm/sec)   p_kst 5.500000e-03   p_cons 3.707185e-01   p_joint 1.158185e-01

Joint ci ratio: 2.046296e-02	ci left: 1.146881e-01	ci right 1.170627e-01	k: 32444	n:280000
Cons ci ratio: 9.650614e-03	ci left: 3.689819e-01	ci right 3.725636e-01	k: 103816	n:280000
KS ci ratio: 9.942103e-02	ci left: 5.246819e-03	ci right 5.799206e-03	k: 1545	n:280000
CPNE3   280000 perm   82 sec   (3394 perm/sec)   p_kst 5.517857e-03   p_cons 3.707714e-01   p_joint 1.158714e-01

Outputting figure to mutsig2_images.part000000000042/CPNE3.2_1674_280000_0.0055179_0.37077_0.11587.png
                gene_name: CPNE3
               theta_stop: 0.099 
                    nperm: 280000 
                     p_ks: 0.0055 
        ci_ks_bounds_left: 0.0052 
       ci_ks_bounds_right: 0.0058 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 50 percent done.
CR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.048275e-02	ci left: 2.867661e-01	ci right 3.047530e-01	k: 2957	n:10000
Cons ci ratio: 1.487317e-02	ci left: 8.675412e-01	ci right 8.806401e-01	k: 8742	n:10000
KS ci ratio: 3.363436e-01	ci left: 1.114735e-02	ci right 1.574255e-02	k: 133	n:10000
CR1   10000 perm   2 sec   (4239 perm/sec)   p_kst 1.330000e-02   p_cons 8.742000e-01   p_joint 2.957000e-01

Joint ci ratio: 1.382707e-02	ci left: 7.951457e-01	ci right 8.062668e-01	k: 16015	n:20000
Cons ci ratio: 1.050875e-02	ci left: 8.696769e-01	ci right 8.789140e-01	k: 17487	n:20000
KS ci ratio: 2.547487e-01	ci left: 1.020918e-02	ci right 1.323527e-02	k: 233	n:20000
CR1   20000 perm   5 sec   (3640 perm/sec)   p_kst 1.165000e-02   p_cons 8.743500e-01   p_joint 8.007500e-01

Joint ci ratio: 2.586877e-02	ci left: 4.279156e-01	ci right 4.391639e-01	k: 13006	n:30000
Cons ci ratio: 8.669000e-03	ci left: 8.682343e-01	ci right 8.758268e-01	k: 26162	n:30000
KS ci ratio: 2.149248e-01	ci left: 9.787485e-03	ci right 1.217530e-02	k: 328	n:30000
CR1   30000 perm   8 sec   (3565 perm/sec)   p_kst 1.093333e-02   p_cons 8.720667e-01   p_joint 4.335333e-01

Joint ci ratio: 3.252499e-02	ci left: 2.620474e-01	ci right 2.707365e-01	k: 10655	n:40000
Cons ci ratio: 7.461697e-03	ci left: 8.701270e-01	ci right 8.766687e-01	k: 34937	n:40000
KS ci ratio: 1.843685e-01	ci left: 1.014409e-02	ci right 1.222778e-02	k: 446	n:40000
CR1   40000 perm   11 sec   (3496 perm/sec)   p_kst 1.115000e-02   p_cons 8.734250e-01   p_joint 2.663750e-01

Joint ci ratio: 3.008649e-02	ci left: 2.496317e-01	ci right 2.572769e-01	k: 12672	n:50000
Cons ci ratio: 6.171631e-03	ci left: 8.869620e-01	ci right 8.924727e-01	k: 44487	n:50000
KS ci ratio: 1.629616e-01	ci left: 1.050712e-02	ci right 1.239024e-02	k: 571	n:50000
CR1   50000 perm   15 sec   (3407 perm/sec)   p_kst 1.142000e-02   p_cons 8.897400e-01   p_joint 2.534400e-01

Joint ci ratio: 2.566026e-02	ci left: 2.764263e-01	ci right 2.836283e-01	k: 16801	n:60000
Cons ci ratio: 5.628304e-03	ci left: 8.874019e-01	ci right 8.924270e-01	k: 53396	n:60000
KS ci ratio: 1.485881e-01	ci left: 1.061408e-02	ci right 1.233366e-02	k: 687	n:60000
CR1   60000 perm   18 sec   (3362 perm/sec)   p_kst 1.145000e-02   p_cons 8.899333e-01   p_joint 2.800167e-01

Joint ci ratio: 2.379669e-02	ci left: 2.760211e-01	ci right 2.826829e-01	k: 19554	n:70000
Cons ci ratio: 5.221525e-03	ci left: 8.871830e-01	ci right 8.918418e-01	k: 62267	n:70000
KS ci ratio: 1.383234e-01	ci left: 1.055774e-02	ci right 1.214030e-02	k: 793	n:70000
CR1   70000 perm   21 sec   (3327 perm/sec)   p_kst 1.132857e-02   p_cons 8.895286e-01   p_joint 2.793429e-01

Joint ci ratio: 1.928115e-02	ci left: 3.373655e-01	ci right 3.439461e-01	k: 27252	n:80000
Cons ci ratio: 4.879696e-03	ci left: 8.875214e-01	ci right 8.918752e-01	k: 71177	n:80000
KS ci ratio: 1.288472e-01	ci left: 1.070007e-02	ci right 1.218568e-02	k: 914	n:80000
CR1   80000 perm   24 sec   (3292 perm/sec)   p_kst 1.142500e-02   p_cons 8.897125e-01   p_joint 3.406500e-01

Joint ci ratio: 1.506810e-02	ci left: 4.259742e-01	ci right 4.324526e-01	k: 38629	n:90000
Cons ci ratio: 4.605846e-03	ci left: 8.874224e-01	ci right 8.915302e-01	k: 80054	n:90000
KS ci ratio: 1.219209e-01	ci left: 1.066278e-02	ci right 1.205787e-02	k: 1021	n:90000
CR1   90000 perm   28 sec   (3250 perm/sec)   p_kst 1.134444e-02   p_cons 8.894889e-01   p_joint 4.292111e-01

Joint ci ratio: 1.431448e-02	ci left: 4.254699e-01	ci right 4.316142e-01	k: 42854	n:100000
Cons ci ratio: 4.736436e-03	ci left: 8.705277e-01	ci right 8.746706e-01	k: 87261	n:100000
KS ci ratio: 1.162643e-01	ci left: 1.058610e-02	ci right 1.190248e-02	k: 1123	n:100000
CR1   100000 perm   32 sec   (3148 perm/sec)   p_kst 1.123000e-02   p_cons 8.726100e-01   p_joint 4.285400e-01

Joint ci ratio: 1.157849e-02	ci left: 5.073229e-01	ci right 5.132402e-01	k: 56131	n:110000
Cons ci ratio: 4.518795e-03	ci left: 8.704872e-01	ci right 8.744386e-01	k: 95972	n:110000
KS ci ratio: 1.113741e-01	ci left: 1.051575e-02	ci right 1.176477e-02	k: 1224	n:110000
CR1   110000 perm   35 sec   (3121 perm/sec)   p_kst 1.112727e-02   p_cons 8.724727e-01   p_joint 5.102818e-01

Joint ci ratio: 1.658981e-02	ci left: 3.148914e-01	ci right 3.201674e-01	k: 38103	n:120000
Cons ci ratio: 4.309501e-03	ci left: 8.714467e-01	ci right 8.752186e-01	k: 104801	n:120000
KS ci ratio: 1.065264e-01	ci left: 1.056357e-02	ci right 1.176023e-02	k: 1338	n:120000
CR1   120000 perm   39 sec   (3095 perm/sec)   p_kst 1.115000e-02   p_cons 8.733417e-01   p_joint 3.175250e-01

Joint ci ratio: 1.594586e-02	ci left: 3.148086e-01	ci right 3.198765e-01	k: 41254	n:130000
Cons ci ratio: 4.144808e-03	ci left: 8.712861e-01	ci right 8.749126e-01	k: 113504	n:130000
KS ci ratio: 1.026549e-01	ci left: 1.052256e-02	ci right 1.166864e-02	k: 1441	n:130000
CR1   130000 perm   42 sec   (3067 perm/sec)   p_kst 1.108462e-02   p_cons 8.731077e-01   p_joint 3.173385e-01

Joint ci ratio: 1.708053e-02	ci left: 2.710308e-01	ci right 2.757071e-01	k: 38271	n:140000
Cons ci ratio: 3.991209e-03	ci left: 8.715103e-01	ci right 8.750027e-01	k: 122257	n:140000
KS ci ratio: 9.824874e-02	ci left: 1.069017e-02	ci right 1.180164e-02	k: 1573	n:140000
CR1   140000 perm   46 sec   (3021 perm/sec)   p_kst 1.123571e-02   p_cons 8.732643e-01   p_joint 2.733643e-01

Outputting figure to mutsig2_images.part000000000042/CR1.2_7658_140000_0.011236_0.87326_0.27336.png
                gene_name: CR1
               theta_stop: 0.098 
                    nperm: 140000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 75 percent done.
CR1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.075657e-03	ci left: 9.447135e-01	ci right 9.534225e-01	k: 9492	n:10000
KS ci ratio: 2.317481e-02	ci left: 7.322943e-01	ci right 7.495652e-01	k: 7410	n:10000
CR1L   10000 perm   2 sec   (6352 perm/sec)   p_kst 7.410000e-01   p_cons 9.492000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000042/CR1L.2_1758_10000_0.741_0.9492_1.png
                gene_name: CR1L
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000042
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 42 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1655>
Subject: Job 9877027: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1655>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000043> was used as the working directory.
Started at Fri Oct  5 22:35:56 2012
Results reported at Fri Oct  5 22:37:45 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000043.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000043.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 43  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000043.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    118.58 sec.
    Max Memory :      1932 MB
    Max Swap   :      4649 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
43
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 43
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 43: processing genes 3809 - 3899
Calculating significance of each gene.
Using projection method.
3809	CRABP1	1
3810	CRABP2	1
3811	CRADD	1
3812	CRAMP1L	1
3813	CRAT	1
3814	CRB1	1
3815	CRB2	8.036811e-02
3816	CRB3	1
3817	CRBN	1
3818	CRCP	1
3819	CRCT1	1
3820	CREB1	1
3821	CREB3	1
3822	CREB3L1	1
3823	CREB3L2	1
3824	CREB3L3	1
3825	CREB3L4	1
3826	CREB5	1
3827	CREBBP	1
3828	CREBL2	1
3829	CREBZF	1
3830	CREG1	1
3831	CREG2	1
3832	CRELD1	1
3833	CRELD2	1
3834	CREM	1
3835	CRH	1
3836	CRHBP	1.213365e-01
3837	CRHR1	1
3838	CRHR2	1
3839	CRIM1	1
3840	CRIP1	1
3841	CRIP2	1
3842	CRIP3	1
3843	CRIPAK	3.778852e-04
In gene CRIPT the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 306     n = 1	mu =   9.08e-07
3844	CRIPT	2.894983e-02
3845	CRISP1	1
3846	CRISP2	8.220772e-02
3847	CRISP3	1
3848	CRISPLD1	1
3849	CRISPLD2	1
3850	CRK	9.492682e-02
3851	CRKL	1
3852	CRLF1	1
3853	CRLF2	1
3854	CRLF3	1.026715e-01
3855	CRLS1	1
3856	CRMP1	1.842142e-01
3857	CRNKL1	1
3858	CRNN	5.012719e-02
3859	CROCC	7.737570e-05
3860	CROT	1.800719e-01
3861	CRP	1
3862	CRTAC1	1.660085e-02
3863	CRTAM	1
3864	CRTAP	1
3865	CRTC1	1
3866	CRTC2	1
3867	CRTC3	1
3868	CRX	1
3869	CRY1	1
3870	CRY2	1
3871	CRYAA	5.771537e-02
3872	CRYAB	1
3873	CRYBA1	1
3874	CRYBA2	1
3875	CRYBA4	1
3876	CRYBB1	1
3877	CRYBB2	1
3878	CRYBB3	1
3879	CRYBG3	1
3880	CRYGA	1
3881	CRYGB	1
3882	CRYGC	1
3883	CRYGD	1
3884	CRYGN	1
3885	CRYGS	1
3886	CRYL1	1
3887	CRYM	1
3888	CRYZ	1
3889	CRYZL1	1
3890	CS	1
3891	CSAD	1
3892	CSAG1	1
3893	CSDA	1
3894	CSDC2	1
3895	CSDE1	1
3896	CSE1L	1
3897	CSF1	1
3898	CSF1R	1.397389e-01
3899	CSF2	1
Done

Running MutSig 2:
Scatter job 43: processing genes 3809 - 3899
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CROCC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.896462e-02	ci left: 2.973720e-01	ci right 3.155408e-01	k: 3064	n:10000
Cons ci ratio: 2.685829e-02	ci left: 6.712594e-01	ci right 6.896353e-01	k: 6805	n:10000
KS ci ratio: 1.029581e-01	ci left: 1.200443e-01	ci right 1.331741e-01	k: 1265	n:10000
CROCC   10000 perm   2 sec   (4243 perm/sec)   p_kst 1.265000e-01   p_cons 6.805000e-01   p_joint 3.064000e-01

Joint ci ratio: 4.885648e-02	ci left: 2.375148e-01	ci right 2.494598e-01	k: 4869	n:20000
Cons ci ratio: 1.900105e-02	ci left: 6.737858e-01	ci right 6.867617e-01	k: 13606	n:20000
KS ci ratio: 7.170532e-02	ci left: 1.253190e-01	ci right 1.346889e-01	k: 2599	n:20000
CROCC   20000 perm   7 sec   (2814 perm/sec)   p_kst 1.299500e-01   p_cons 6.803000e-01   p_joint 2.434500e-01

Outputting figure to mutsig2_images.part000000000043/CROCC.5_6202_20000_0.12995_0.6803_0.24345.png
                gene_name: CROCC
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 33 percent done.
CRIPAK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.332647e-02	ci left: 5.706554e-01	ci right 5.900977e-01	k: 5804	n:10000
Cons ci ratio: 2.483577e-03	ci left: 9.946724e-01	ci right 9.972253e-01	k: 9961	n:10000
KS ci ratio: 5.251744e-02	ci left: 3.482980e-01	ci right 3.671849e-01	k: 3577	n:10000
CRIPAK   10000 perm   2 sec   (6264 perm/sec)   p_kst 3.577000e-01   p_cons 9.961000e-01   p_joint 5.804000e-01

Outputting figure to mutsig2_images.part000000000043/CRIPAK.3_1345_10000_0.3577_0.9961_0.5804.png
                gene_name: CRIPAK
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 1.00 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 67 percent done.
CRTAC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.169492e-02	ci left: 2.786422e-01	ci right 2.964817e-01	k: 2875	n:10000
Cons ci ratio: 4.860600e-02	ci left: 3.844050e-01	ci right 4.036568e-01	k: 3940	n:10000
KS ci ratio: 6.108332e-02	ci left: 2.827037e-01	ci right 3.006178e-01	k: 2916	n:10000
CRTAC1   10000 perm   2 sec   (6126 perm/sec)   p_kst 2.916000e-01   p_cons 3.940000e-01   p_joint 2.875000e-01

Outputting figure to mutsig2_images.part000000000043/CRTAC1.2_2046_10000_0.2916_0.394_0.2875.png
                gene_name: CRTAC1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000043
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 43 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1640>
Subject: Job 9877029: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1640>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000044> was used as the working directory.
Started at Fri Oct  5 22:35:56 2012
Results reported at Fri Oct  5 23:21:17 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000044.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000044.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 44  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000044.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2744.03 sec.
    Max Memory :      2318 MB
    Max Swap   :      4681 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
44
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 44
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 44: processing genes 3900 - 3989
Calculating significance of each gene.
Using projection method.
3900	CSF2RA	8.229920e-02
3901	CSF2RB	1
3902	CSF3	1
3903	CSF3R	1
3904	CSGALNACT1	1
3905	CSGALNACT2	1
3906	CSH1	1
3907	CSH2	4.904012e-02
3908	CSHL1	1
3909	CSK	1
3910	CSMD1	3.924675e-01
3911	CSMD2	7.790275e-02
3912	CSMD3	1.723857e-02
3913	CSN1S1	1
3914	CSN2	1
3915	CSN3	1
3916	CSNK1A1	1
3917	CSNK1A1L	4.215129e-02
3918	CSNK1D	1
3919	CSNK1E	1
3920	CSNK1G1	1
3921	CSNK1G2	1
3922	CSNK1G3	1
3923	CSNK2A1	1
3924	CSNK2A2	1
3925	CSNK2B	1
3926	CSPG4	1.999318e-01
3927	CSPG5	2.175211e-02
3928	CSPP1	1.878468e-01
3929	CSRNP1	1
3930	CSRNP2	1
3931	CSRNP3	1
3932	CSRP1	1
3933	CSRP2	1
3934	CSRP2BP	1
3935	CSRP3	1
3936	CST1	1
3937	CST11	1
3938	CST2	1
3939	CST3	1
3940	CST4	1
3941	CST5	1
3942	CST6	1
3943	CST7	1
3944	CST8	1
3945	CST9	1
3946	CST9L	4.190969e-02
3947	CSTA	1
3948	CSTB	1.676038e-02
3949	CSTF1	1
3950	CSTF2	1
3951	CSTF2T	1
3952	CSTF3	1
3953	CSTL1	1
3954	CT45A5	1
3955	CT47B1	1
3956	CT62	1
3957	CTAG2	1
3958	CTAGE1	1
3959	CTAGE5	1
3960	CTAGE6P	1
3961	CTAGE9	1
3962	CTBP1	1
3963	CTBP2	1
3964	CTBS	1
3965	CTCF	1
3966	CTCFL	1
3967	CTDP1	1
3968	CTDSP1	1
3969	CTDSP2	7.716113e-03
3970	CTDSPL	1
3971	CTDSPL2	1
3972	CTGF	7.671334e-02
3973	CTH	1
3974	CTHRC1	1
3975	CTLA4	1
3976	CTNNA1	1
3977	CTNNA2	1
3978	CTNNA3	1
In gene CTNNAL1 the following bins exceed PROBCAP:
    PRAD-CH-5765	categ 6	N = 2134    n = 1	mu =   3.34e-07
3979	CTNNAL1	6.961782e-04
3980	CTNNB1	1.519423e-03
3981	CTNNBIP1	1
3982	CTNNBL1	1
3983	CTNND1	1
3984	CTNND2	1
3985	CTNS	1
3986	CTPS	1
3987	CTPS2	1
3988	CTR9	1
3989	CTRC	1
Done

Running MutSig 2:
Scatter job 44: processing genes 3900 - 3989
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CSMD3
Processing conservation and coverage...
87% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.365642e-02	ci left: 3.385600e-01	ci right 3.573286e-01	k: 3479	n:10000
Cons ci ratio: 8.609581e-02	ci left: 1.642567e-01	ci right 1.791350e-01	k: 1716	n:10000
KS ci ratio: 5.852375e-02	ci left: 3.005450e-01	ci right 3.187660e-01	k: 3096	n:10000
CSMD3   10000 perm   3 sec   (2936 perm/sec)   p_kst 3.096000e-01   p_cons 1.716000e-01   p_joint 3.479000e-01

Outputting figure to mutsig2_images.part000000000044/CSMD3.4_11470_10000_0.3096_0.1716_0.3479.png
                gene_name: CSMD3
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 17 percent done.
CSMD2
Processing conservation and coverage...
93% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.890920e-02	ci left: 2.977686e-01	ci right 3.159440e-01	k: 3068	n:10000
Cons ci ratio: 6.377574e-02	ci left: 2.653742e-01	ci right 2.829575e-01	k: 2741	n:10000
KS ci ratio: 5.821045e-02	ci left: 3.028259e-01	ci right 3.210837e-01	k: 3119	n:10000
CSMD2   10000 perm   3 sec   (3445 perm/sec)   p_kst 3.119000e-01   p_cons 2.741000e-01   p_joint 3.068000e-01

Outputting figure to mutsig2_images.part000000000044/CSMD2.3_10740_10000_0.3119_0.2741_0.3068.png
                gene_name: CSMD2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 33 percent done.
CTNNAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.773271e-02	ci left: 2.423276e-01	ci right 2.594177e-01	k: 2508	n:10000
Cons ci ratio: 1.578567e-02	ci left: 8.535544e-01	ci right 8.672349e-01	k: 8605	n:10000
KS ci ratio: 1.442098e-01	ci left: 6.381856e-02	ci right 7.383439e-02	k: 687	n:10000
CTNNAL1   10000 perm   2 sec   (5272 perm/sec)   p_kst 6.870000e-02   p_cons 8.605000e-01   p_joint 2.508000e-01

Joint ci ratio: 6.653117e-02	ci left: 1.429572e-01	ci right 1.528454e-01	k: 2957	n:20000
Cons ci ratio: 1.126799e-02	ci left: 8.532883e-01	ci right 8.630073e-01	k: 17164	n:20000
KS ci ratio: 1.041443e-01	ci left: 6.269489e-02	ci right 6.963189e-02	k: 1322	n:20000
CTNNAL1   20000 perm   4 sec   (4692 perm/sec)   p_kst 6.610000e-02   p_cons 8.582000e-01   p_joint 1.478500e-01

Joint ci ratio: 5.296387e-02	ci left: 1.502952e-01	ci right 1.585052e-01	k: 4631	n:30000
Cons ci ratio: 9.177362e-03	ci left: 8.548081e-01	ci right 8.627223e-01	k: 25764	n:30000
KS ci ratio: 8.532216e-02	ci left: 6.292191e-02	ci right 6.856255e-02	k: 1971	n:30000
CTNNAL1   30000 perm   7 sec   (4431 perm/sec)   p_kst 6.570000e-02   p_cons 8.588000e-01   p_joint 1.543667e-01

Outputting figure to mutsig2_images.part000000000044/CTNNAL1.3_2281_30000_0.0657_0.8588_0.15437.png
                gene_name: CTNNAL1
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.066 
        ci_ks_bounds_left: 0.063 
       ci_ks_bounds_right: 0.069 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 50 percent done.
CTNNB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.791669e-01	ci left: 8.397740e-04	ci right 2.472817e-03	k: 15	n:10000
Cons ci ratio: 7.861921e-02	ci left: 1.912134e-01	ci right 2.069623e-01	k: 1990	n:10000
KS ci ratio: 1.385306e+00	ci left: 2.814811e-04	ci right 1.441732e-03	k: 7	n:10000
CTNNB1   10000 perm   2 sec   (5507 perm/sec)   p_kst 7.000000e-04   p_cons 1.990000e-01   p_joint 1.500000e-03

Joint ci ratio: 7.273797e-01	ci left: 9.304852e-04	ci right 2.022759e-03	k: 28	n:20000
Cons ci ratio: 5.621939e-02	ci left: 1.900233e-01	ci right 2.010654e-01	k: 3910	n:20000
KS ci ratio: 8.549436e-01	ci left: 6.109296e-04	ci right 1.543998e-03	k: 20	n:20000
CTNNB1   20000 perm   4 sec   (4623 perm/sec)   p_kst 1.000000e-03   p_cons 1.955000e-01   p_joint 1.400000e-03

Joint ci ratio: 7.540522e-01	ci left: 5.662111e-04	ci right 1.269611e-03	k: 26	n:30000
Cons ci ratio: 4.607160e-02	ci left: 1.899019e-01	ci right 1.988907e-01	k: 5831	n:30000
KS ci ratio: 7.684293e-01	ci left: 5.393597e-04	ci right 1.229920e-03	k: 25	n:30000
CTNNB1   30000 perm   7 sec   (4447 perm/sec)   p_kst 8.333333e-04   p_cons 1.943667e-01   p_joint 8.666667e-04

Joint ci ratio: 7.405418e-01	ci left: 4.448749e-04	ci right 9.819388e-04	k: 27	n:40000
Cons ci ratio: 3.995668e-02	ci left: 1.900603e-01	ci right 1.978342e-01	k: 7757	n:40000
KS ci ratio: 6.441379e-01	ci left: 6.304261e-04	ci right 1.245764e-03	k: 36	n:40000
CTNNB1   40000 perm   9 sec   (4381 perm/sec)   p_kst 9.000000e-04   p_cons 1.939250e-01   p_joint 6.750000e-04

Joint ci ratio: 1.239476e+00	ci left: 8.231066e-05	ci right 3.416684e-04	k: 9	n:50000
Cons ci ratio: 3.590729e-02	ci left: 1.890124e-01	ci right 1.959433e-01	k: 9623	n:50000
KS ci ratio: 5.597199e-01	ci left: 7.079104e-04	ci right 1.272622e-03	k: 48	n:50000
CTNNB1   50000 perm   12 sec   (4089 perm/sec)   p_kst 9.600000e-04   p_cons 1.924600e-01   p_joint 1.800000e-04

Joint ci ratio: 4.897345e-01	ci left: 8.069402e-04	ci right 1.343209e-03	k: 63	n:60000
Cons ci ratio: 3.264370e-02	ci left: 1.905941e-01	ci right 1.969356e-01	k: 11625	n:60000
KS ci ratio: 5.016452e-01	ci left: 7.631894e-04	ci right 1.287013e-03	k: 60	n:60000
CTNNB1   60000 perm   15 sec   (4060 perm/sec)   p_kst 1.000000e-03   p_cons 1.937500e-01   p_joint 1.050000e-03

Joint ci ratio: 7.686270e-01	ci left: 2.311369e-04	ci right 5.271685e-04	k: 25	n:70000
Cons ci ratio: 3.029102e-02	ci left: 1.901247e-01	ci right 1.959865e-01	k: 13513	n:70000
KS ci ratio: 4.682920e-01	ci left: 7.670230e-04	ci right 1.247321e-03	k: 69	n:70000
CTNNB1   70000 perm   17 sec   (4007 perm/sec)   p_kst 9.857143e-04   p_cons 1.930429e-01   p_joint 3.571429e-04

Joint ci ratio: 7.155521e-01	ci left: 2.427850e-04	ci right 5.205693e-04	k: 29	n:80000
Cons ci ratio: 2.835580e-02	ci left: 1.900837e-01	ci right 1.955636e-01	k: 15425	n:80000
KS ci ratio: 4.936760e-01	ci left: 5.942381e-04	ci right 9.934065e-04	k: 62	n:80000
CTNNB1   80000 perm   20 sec   (3949 perm/sec)   p_kst 7.750000e-04   p_cons 1.928125e-01   p_joint 3.625000e-04

Joint ci ratio: 6.928376e-01	ci left: 2.340449e-04	ci right 4.888761e-04	k: 31	n:90000
Cons ci ratio: 2.669243e-02	ci left: 1.907245e-01	ci right 1.958953e-01	k: 17397	n:90000
KS ci ratio: 4.586126e-01	ci left: 6.260017e-04	ci right 1.007363e-03	k: 72	n:90000
CTNNB1   90000 perm   23 sec   (3867 perm/sec)   p_kst 8.000000e-04   p_cons 1.933000e-01   p_joint 3.444444e-04

Joint ci ratio: 6.822684e-01	ci left: 2.188897e-04	ci right 4.517148e-04	k: 32	n:100000
Cons ci ratio: 2.528710e-02	ci left: 1.912943e-01	ci right 1.962035e-01	k: 19374	n:100000
KS ci ratio: 4.465512e-01	ci left: 5.988388e-04	ci right 9.511624e-04	k: 76	n:100000
CTNNB1   100000 perm   26 sec   (3830 perm/sec)   p_kst 7.600000e-04   p_cons 1.937400e-01   p_joint 3.200000e-04

Joint ci ratio: 3.116330e-01	ci left: 1.212871e-03	ci right 1.668611e-03	k: 157	n:110000
Cons ci ratio: 2.413524e-02	ci left: 1.910876e-01	ci right 1.957649e-01	k: 21276	n:110000
KS ci ratio: 4.225373e-01	ci left: 6.172723e-04	ci right 9.554019e-04	k: 85	n:110000
CTNNB1   110000 perm   29 sec   (3764 perm/sec)   p_kst 7.727273e-04   p_cons 1.934182e-01   p_joint 1.427273e-03

Joint ci ratio: 2.986817e-01	ci left: 1.219537e-03	ci right 1.655129e-03	k: 171	n:120000
Cons ci ratio: 2.313076e-02	ci left: 1.908782e-01	ci right 1.953533e-01	k: 23173	n:120000
KS ci ratio: 4.041571e-01	ci left: 6.255692e-04	ci right 9.493445e-04	k: 93	n:120000
CTNNB1   120000 perm   32 sec   (3717 perm/sec)   p_kst 7.750000e-04   p_cons 1.931083e-01   p_joint 1.425000e-03

Joint ci ratio: 5.434954e-01	ci left: 2.921124e-04	ci right 5.157803e-04	k: 51	n:130000
Cons ci ratio: 2.218782e-02	ci left: 1.914628e-01	ci right 1.957662e-01	k: 25169	n:130000
KS ci ratio: 3.899015e-01	ci left: 6.259193e-04	ci right 9.355129e-04	k: 100	n:130000
CTNNB1   130000 perm   36 sec   (3661 perm/sec)   p_kst 7.692308e-04   p_cons 1.936077e-01   p_joint 3.923077e-04

Joint ci ratio: 5.284670e-01	ci left: 2.897733e-04	ci right 5.032439e-04	k: 54	n:140000
Cons ci ratio: 2.137249e-02	ci left: 1.916611e-01	ci right 1.958087e-01	k: 27122	n:140000
KS ci ratio: 3.805985e-01	ci left: 6.134654e-04	ci right 9.078490e-04	k: 105	n:140000
CTNNB1   140000 perm   39 sec   (3626 perm/sec)   p_kst 7.500000e-04   p_cons 1.937286e-01   p_joint 3.857143e-04

Joint ci ratio: 5.237325e-01	ci left: 2.762351e-04	ci right 4.772407e-04	k: 55	n:150000
Cons ci ratio: 2.064354e-02	ci left: 1.917956e-01	ci right 1.958029e-01	k: 29069	n:150000
KS ci ratio: 3.719310e-01	ci left: 6.027482e-04	ci right 8.837984e-04	k: 110	n:150000
CTNNB1   150000 perm   42 sec   (3590 perm/sec)   p_kst 7.333333e-04   p_cons 1.937933e-01   p_joint 3.666667e-04

Joint ci ratio: 5.435162e-01	ci left: 2.373392e-04	ci right 4.190764e-04	k: 51	n:160000
Cons ci ratio: 2.001325e-02	ci left: 1.914672e-01	ci right 1.953440e-01	k: 30944	n:160000
KS ci ratio: 3.622705e-01	ci left: 5.991174e-04	ci right 8.695056e-04	k: 116	n:160000
CTNNB1   160000 perm   45 sec   (3540 perm/sec)   p_kst 7.250000e-04   p_cons 1.934000e-01   p_joint 3.187500e-04

Joint ci ratio: 5.599176e-01	ci left: 2.081919e-04	ci right 3.743418e-04	k: 48	n:170000
Cons ci ratio: 1.939635e-02	ci left: 1.918354e-01	ci right 1.955986e-01	k: 32931	n:170000
KS ci ratio: 3.518969e-01	ci left: 6.013587e-04	ci right 8.632127e-04	k: 123	n:170000
CTNNB1   170000 perm   49 sec   (3495 perm/sec)   p_kst 7.235294e-04   p_cons 1.937118e-01   p_joint 2.823529e-04

Joint ci ratio: 6.121297e-01	ci left: 1.587634e-04	ci right 3.025914e-04	k: 40	n:180000
Cons ci ratio: 1.883719e-02	ci left: 1.920979e-01	ci right 1.957564e-01	k: 34906	n:180000
KS ci ratio: 3.547788e-01	ci left: 5.578225e-04	ci right 8.031672e-04	k: 121	n:180000
CTNNB1   180000 perm   52 sec   (3458 perm/sec)   p_kst 6.722222e-04   p_cons 1.939222e-01   p_joint 2.222222e-04

Joint ci ratio: 7.156324e-01	ci left: 1.022221e-04	ci right 2.191971e-04	k: 29	n:190000
Cons ci ratio: 1.832222e-02	ci left: 1.923604e-01	ci right 1.959226e-01	k: 36886	n:190000
KS ci ratio: 3.491046e-01	ci left: 5.476545e-04	ci right 7.838025e-04	k: 125	n:190000
CTNNB1   190000 perm   56 sec   (3416 perm/sec)   p_kst 6.578947e-04   p_cons 1.941368e-01   p_joint 1.526316e-04

Joint ci ratio: 7.039965e-01	ci left: 1.012066e-04	ci right 2.141275e-04	k: 30	n:200000
Cons ci ratio: 1.786983e-02	ci left: 1.922042e-01	ci right 1.956747e-01	k: 38787	n:200000
KS ci ratio: 3.360221e-01	ci left: 5.659730e-04	ci right 7.988947e-04	k: 135	n:200000
CTNNB1   200000 perm   59 sec   (3380 perm/sec)   p_kst 6.750000e-04   p_cons 1.939350e-01   p_joint 1.500000e-04

Joint ci ratio: 6.929102e-01	ci left: 1.003021e-04	ci right 2.095270e-04	k: 31	n:210000
Cons ci ratio: 1.742707e-02	ci left: 1.924625e-01	ci right 1.958507e-01	k: 40772	n:210000
KS ci ratio: 3.300119e-01	ci left: 5.608406e-04	ci right 7.866456e-04	k: 140	n:210000
CTNNB1   210000 perm   63 sec   (3344 perm/sec)   p_kst 6.666667e-04   p_cons 1.941524e-01   p_joint 1.476190e-04

Joint ci ratio: 6.823317e-01	ci left: 9.949286e-05	ci right 2.053323e-04	k: 32	n:220000
Cons ci ratio: 1.701739e-02	ci left: 1.926666e-01	ci right 1.959779e-01	k: 42750	n:220000
KS ci ratio: 3.254302e-01	ci left: 5.520335e-04	ci right 7.705622e-04	k: 144	n:220000
CTNNB1   220000 perm   67 sec   (3307 perm/sec)   p_kst 6.545455e-04   p_cons 1.943182e-01   p_joint 1.454545e-04

Joint ci ratio: 6.625491e-01	ci left: 1.023760e-04	ci right 2.065661e-04	k: 34	n:230000
Cons ci ratio: 1.664478e-02	ci left: 1.926760e-01	ci right 1.959143e-01	k: 44687	n:230000
KS ci ratio: 3.168071e-01	ci left: 5.600121e-04	ci right 7.746352e-04	k: 152	n:230000
CTNNB1   230000 perm   70 sec   (3271 perm/sec)   p_kst 6.608696e-04   p_cons 1.942913e-01   p_joint 1.478261e-04

Joint ci ratio: 6.532830e-01	ci left: 1.015803e-04	ci right 2.028131e-04	k: 35	n:240000
Cons ci ratio: 1.628586e-02	ci left: 1.928724e-01	ci right 1.960434e-01	k: 46669	n:240000
KS ci ratio: 3.127471e-01	ci left: 5.520281e-04	ci right 7.603384e-04	k: 156	n:240000
CTNNB1   240000 perm   74 sec   (3237 perm/sec)   p_kst 6.500000e-04   p_cons 1.944542e-01   p_joint 1.458333e-04

Joint ci ratio: 6.443951e-01	ci left: 1.008578e-04	ci right 1.993512e-04	k: 36	n:250000
Cons ci ratio: 1.596265e-02	ci left: 1.927905e-01	ci right 1.958966e-01	k: 48585	n:250000
KS ci ratio: 3.078839e-01	ci left: 5.483896e-04	ci right 7.514776e-04	k: 161	n:250000
CTNNB1   250000 perm   78 sec   (3202 perm/sec)   p_kst 6.440000e-04   p_cons 1.943400e-01   p_joint 1.440000e-04

Joint ci ratio: 6.197576e-01	ci left: 1.066668e-04	ci right 2.050493e-04	k: 39	n:260000
Cons ci ratio: 1.565409e-02	ci left: 1.927922e-01	ci right 1.958377e-01	k: 50521	n:260000
KS ci ratio: 2.979323e-01	ci left: 5.663919e-04	ci right 7.680860e-04	k: 172	n:260000
CTNNB1   260000 perm   82 sec   (3167 perm/sec)   p_kst 6.615385e-04   p_cons 1.943115e-01   p_joint 1.500000e-04

Joint ci ratio: 6.121535e-01	ci left: 1.058413e-04	ci right 2.017303e-04	k: 40	n:270000
Cons ci ratio: 1.535387e-02	ci left: 1.929752e-01	ci right 1.959647e-01	k: 52506	n:270000
KS ci ratio: 2.920816e-01	ci left: 5.694222e-04	ci right 7.674771e-04	k: 179	n:270000
CTNNB1   270000 perm   86 sec   (3130 perm/sec)   p_kst 6.629630e-04   p_cons 1.944667e-01   p_joint 1.481481e-04

Joint ci ratio: 3.919293e-01	ci left: 2.873744e-04	ci right 4.304440e-04	k: 99	n:280000
Cons ci ratio: 1.507371e-02	ci left: 1.930745e-01	ci right 1.960104e-01	k: 54471	n:280000
KS ci ratio: 2.857989e-01	ci left: 5.755871e-04	ci right 7.707030e-04	k: 187	n:280000
CTNNB1   280000 perm   90 sec   (3095 perm/sec)   p_kst 6.678571e-04   p_cons 1.945393e-01   p_joint 3.535714e-04

Joint ci ratio: 3.824829e-01	ci left: 2.930282e-04	ci right 4.345125e-04	k: 104	n:290000
Cons ci ratio: 1.482140e-02	ci left: 1.928923e-01	ci right 1.957759e-01	k: 56356	n:290000
KS ci ratio: 2.791931e-01	ci left: 5.845760e-04	ci right 7.773535e-04	k: 196	n:290000
CTNNB1   290000 perm   95 sec   (3046 perm/sec)   p_kst 6.758621e-04   p_cons 1.943310e-01   p_joint 3.586207e-04

Joint ci ratio: 3.753991e-01	ci left: 2.953240e-04	ci right 4.346261e-04	k: 108	n:300000
Cons ci ratio: 1.457652e-02	ci left: 1.928256e-01	ci right 1.956603e-01	k: 58272	n:300000
KS ci ratio: 2.743611e-01	ci left: 5.868044e-04	ci right 7.763902e-04	k: 203	n:300000
CTNNB1   300000 perm   100 sec   (3014 perm/sec)   p_kst 6.766667e-04   p_cons 1.942400e-01   p_joint 3.600000e-04

Joint ci ratio: 3.686948e-01	ci left: 2.974943e-04	ci right 4.347102e-04	k: 112	n:310000
Cons ci ratio: 1.432229e-02	ci left: 1.932237e-01	ci right 1.960143e-01	k: 60331	n:310000
KS ci ratio: 2.710602e-01	ci left: 5.829013e-04	ci right 7.685748e-04	k: 208	n:310000
CTNNB1   310000 perm   105 sec   (2965 perm/sec)   p_kst 6.709677e-04   p_cons 1.946161e-01   p_joint 3.612903e-04

Joint ci ratio: 3.638963e-01	ci left: 2.967098e-04	ci right 4.313597e-04	k: 115	n:320000
Cons ci ratio: 1.410111e-02	ci left: 1.931485e-01	ci right 1.958945e-01	k: 62246	n:320000
KS ci ratio: 2.691371e-01	ci left: 5.734254e-04	ci right 7.545657e-04	k: 211	n:320000
CTNNB1   320000 perm   110 sec   (2900 perm/sec)   p_kst 6.593750e-04   p_cons 1.945187e-01   p_joint 3.593750e-04

Joint ci ratio: 3.577798e-01	ci left: 2.987410e-04	ci right 4.315036e-04	k: 119	n:330000
Cons ci ratio: 1.388155e-02	ci left: 1.932656e-01	ci right 1.959701e-01	k: 64223	n:330000
KS ci ratio: 2.654078e-01	ci left: 5.730125e-04	ci right 7.510974e-04	k: 217	n:330000
CTNNB1   330000 perm   118 sec   (2786 perm/sec)   p_kst 6.575758e-04   p_cons 1.946152e-01   p_joint 3.606061e-04

Joint ci ratio: 3.548359e-01	ci left: 2.953103e-04	ci right 4.252193e-04	k: 121	n:340000
Cons ci ratio: 1.366758e-02	ci left: 1.934758e-01	ci right 1.961412e-01	k: 66234	n:340000
KS ci ratio: 2.618293e-01	ci left: 5.726402e-04	ci right 7.478169e-04	k: 223	n:340000
CTNNB1   340000 perm   124 sec   (2733 perm/sec)   p_kst 6.558824e-04   p_cons 1.948059e-01   p_joint 3.558824e-04

Joint ci ratio: 3.519635e-01	ci left: 2.920798e-04	ci right 4.192898e-04	k: 123	n:350000
Cons ci ratio: 1.347620e-02	ci left: 1.933722e-01	ci right 1.959986e-01	k: 68139	n:350000
KS ci ratio: 2.595234e-01	ci left: 5.669607e-04	ci right 7.386247e-04	k: 227	n:350000
CTNNB1   350000 perm   133 sec   (2622 perm/sec)   p_kst 6.485714e-04   p_cons 1.946829e-01   p_joint 3.514286e-04

Joint ci ratio: 3.491598e-01	ci left: 2.890327e-04	ci right 4.136859e-04	k: 125	n:360000
Cons ci ratio: 1.328593e-02	ci left: 1.934325e-01	ci right 1.960224e-01	k: 70101	n:360000
KS ci ratio: 2.578339e-01	ci left: 5.590045e-04	ci right 7.269803e-04	k: 230	n:360000
CTNNB1   360000 perm   142 sec   (2529 perm/sec)   p_kst 6.388889e-04   p_cons 1.947250e-01   p_joint 3.472222e-04

Joint ci ratio: 3.424309e-01	ci left: 2.935612e-04	ci right 4.171875e-04	k: 130	n:370000
Cons ci ratio: 1.310937e-02	ci left: 1.933497e-01	ci right 1.959038e-01	k: 72011	n:370000
KS ci ratio: 2.534815e-01	ci left: 5.641328e-04	ci right 7.303359e-04	k: 238	n:370000
CTNNB1   370000 perm   148 sec   (2498 perm/sec)   p_kst 6.432432e-04   p_cons 1.946243e-01   p_joint 3.513514e-04

Joint ci ratio: 3.398472e-01	ci left: 2.906481e-04	ci right 4.119213e-04	k: 132	n:380000
Cons ci ratio: 1.294260e-02	ci left: 1.932005e-01	ci right 1.957199e-01	k: 73894	n:380000
KS ci ratio: 2.513874e-01	ci left: 5.591474e-04	ci right 7.223077e-04	k: 242	n:380000
CTNNB1   380000 perm   153 sec   (2480 perm/sec)   p_kst 6.368421e-04   p_cons 1.944579e-01   p_joint 3.473684e-04

Joint ci ratio: 3.336331e-01	ci left: 2.949324e-04	ci right 4.152595e-04	k: 137	n:390000
Cons ci ratio: 1.278047e-02	ci left: 1.930976e-01	ci right 1.955839e-01	k: 75792	n:390000
KS ci ratio: 2.453993e-01	ci left: 5.736651e-04	ci right 7.364667e-04	k: 254	n:390000
CTNNB1   390000 perm   159 sec   (2460 perm/sec)   p_kst 6.512821e-04   p_cons 1.943385e-01   p_joint 3.512821e-04

Joint ci ratio: 3.289003e-01	ci left: 2.967275e-04	ci right 4.157067e-04	k: 141	n:400000
Cons ci ratio: 1.262065e-02	ci left: 1.930898e-01	ci right 1.955446e-01	k: 77726	n:400000
KS ci ratio: 2.434978e-01	ci left: 5.687107e-04	ci right 7.286666e-04	k: 258	n:400000
CTNNB1   400000 perm   164 sec   (2432 perm/sec)   p_kst 6.450000e-04   p_cons 1.943150e-01   p_joint 3.525000e-04

Joint ci ratio: 3.137911e-01	ci left: 3.208848e-04	ci right 4.424563e-04	k: 155	n:410000
Cons ci ratio: 1.246833e-02	ci left: 1.930412e-01	ci right 1.954656e-01	k: 79643	n:410000
KS ci ratio: 2.430307e-01	ci left: 5.571297e-04	ci right 7.134823e-04	k: 259	n:410000
CTNNB1   410000 perm   171 sec   (2404 perm/sec)   p_kst 6.317073e-04   p_cons 1.942512e-01   p_joint 3.780488e-04

Joint ci ratio: 3.088797e-01	ci left: 3.242195e-04	ci right 4.447533e-04	k: 160	n:420000
Cons ci ratio: 1.231653e-02	ci left: 1.931186e-01	ci right 1.955142e-01	k: 81612	n:420000
KS ci ratio: 2.398236e-01	ci left: 5.595233e-04	ci right 7.141674e-04	k: 266	n:420000
CTNNB1   420000 perm   176 sec   (2385 perm/sec)   p_kst 6.333333e-04   p_cons 1.943143e-01   p_joint 3.809524e-04

Joint ci ratio: 3.189487e-01	ci left: 2.952545e-04	ci right 4.093299e-04	k: 150	n:430000
Cons ci ratio: 1.217556e-02	ci left: 1.930533e-01	ci right 1.954206e-01	k: 83521	n:430000
KS ci ratio: 2.371736e-01	ci left: 5.596309e-04	ci right 7.123446e-04	k: 272	n:430000
CTNNB1   430000 perm   182 sec   (2359 perm/sec)   p_kst 6.325581e-04   p_cons 1.942349e-01   p_joint 3.488372e-04

Joint ci ratio: 3.148062e-01	ci left: 2.969122e-04	ci right 4.098384e-04	k: 154	n:440000
Cons ci ratio: 1.204055e-02	ci left: 1.929595e-01	ci right 1.952991e-01	k: 85416	n:440000
KS ci ratio: 2.346096e-01	ci left: 5.597425e-04	ci right 7.105958e-04	k: 278	n:440000
CTNNB1   440000 perm   188 sec   (2340 perm/sec)   p_kst 6.318182e-04   p_cons 1.941273e-01   p_joint 3.500000e-04

Joint ci ratio: 3.108210e-01	ci left: 2.985053e-04	ci right 4.103152e-04	k: 158	n:450000
Cons ci ratio: 1.190173e-02	ci left: 1.930850e-01	ci right 1.953990e-01	k: 87408	n:450000
KS ci ratio: 2.321270e-01	ci left: 5.598576e-04	ci right 7.089163e-04	k: 284	n:450000
CTNNB1   450000 perm   194 sec   (2325 perm/sec)   p_kst 6.311111e-04   p_cons 1.942400e-01   p_joint 3.511111e-04

Joint ci ratio: 3.069834e-01	ci left: 3.000378e-04	ci right 4.107628e-04	k: 162	n:460000
Cons ci ratio: 1.177128e-02	ci left: 1.931076e-01	ci right 1.953963e-01	k: 89355	n:460000
KS ci ratio: 2.289357e-01	ci left: 5.640739e-04	ci right 7.118988e-04	k: 292	n:460000
CTNNB1   460000 perm   199 sec   (2309 perm/sec)   p_kst 6.347826e-04   p_cons 1.942500e-01   p_joint 3.521739e-04

Joint ci ratio: 4.409969e-01	ci left: 1.311846e-04	ci right 2.071181e-04	k: 78	n:470000
Cons ci ratio: 1.164581e-02	ci left: 1.931081e-01	ci right 1.953723e-01	k: 91292	n:470000
KS ci ratio: 2.262488e-01	ci left: 5.661169e-04	ci right 7.124932e-04	k: 299	n:470000
CTNNB1   470000 perm   205 sec   (2289 perm/sec)   p_kst 6.361702e-04   p_cons 1.942383e-01   p_joint 1.659574e-04

Joint ci ratio: 4.382323e-01	ci left: 1.303043e-04	ci right 2.051158e-04	k: 79	n:480000
Cons ci ratio: 1.152466e-02	ci left: 1.930983e-01	ci right 1.953387e-01	k: 93224	n:480000
KS ci ratio: 2.243870e-01	ci left: 5.641515e-04	ci right 7.086533e-04	k: 304	n:480000
CTNNB1   480000 perm   211 sec   (2272 perm/sec)   p_kst 6.333333e-04   p_cons 1.942167e-01   p_joint 1.645833e-04

Joint ci ratio: 4.355191e-01	ci left: 1.294613e-04	ci right 2.031937e-04	k: 80	n:490000
Cons ci ratio: 1.140439e-02	ci left: 1.931665e-01	ci right 1.953841e-01	k: 95194	n:490000
KS ci ratio: 2.225704e-01	ci left: 5.622711e-04	ci right 7.049654e-04	k: 309	n:490000
CTNNB1   490000 perm   217 sec   (2257 perm/sec)   p_kst 6.306122e-04   p_cons 1.942735e-01   p_joint 1.632653e-04

Joint ci ratio: 4.302398e-01	ci left: 1.304361e-04	ci right 2.035632e-04	k: 82	n:500000
Cons ci ratio: 1.129069e-02	ci left: 1.931522e-01	ci right 1.953474e-01	k: 97124	n:500000
KS ci ratio: 2.197526e-01	ci left: 5.661395e-04	ci right 7.077508e-04	k: 317	n:500000
CTNNB1   500000 perm   223 sec   (2242 perm/sec)   p_kst 6.340000e-04   p_cons 1.942480e-01   p_joint 1.640000e-04

Joint ci ratio: 2.897225e-01	ci left: 3.069057e-04	ci right 4.126316e-04	k: 182	n:510000
Cons ci ratio: 1.118362e-02	ci left: 1.930466e-01	ci right 1.952196e-01	k: 99007	n:510000
KS ci ratio: 2.180453e-01	ci left: 5.643051e-04	ci right 7.042140e-04	k: 322	n:510000
CTNNB1   510000 perm   229 sec   (2228 perm/sec)   p_kst 6.313725e-04   p_cons 1.941314e-01   p_joint 3.568627e-04

Joint ci ratio: 2.873767e-01	ci left: 3.063554e-04	ci right 4.108820e-04	k: 185	n:520000
Cons ci ratio: 1.107647e-02	ci left: 1.930315e-01	ci right 1.951834e-01	k: 100935	n:520000
KS ci ratio: 2.157202e-01	ci left: 5.661835e-04	ci right 7.048630e-04	k: 329	n:520000
CTNNB1   520000 perm   235 sec   (2213 perm/sec)   p_kst 6.326923e-04   p_cons 1.941058e-01   p_joint 3.557692e-04

Joint ci ratio: 4.651868e-01	ci left: 1.029607e-04	ci right 1.668665e-04	k: 70	n:530000
Cons ci ratio: 1.096969e-02	ci left: 1.930924e-01	ci right 1.952241e-01	k: 102903	n:530000
KS ci ratio: 2.266353e-01	ci left: 5.002465e-04	ci right 6.298427e-04	k: 298	n:530000
CTNNB1   530000 perm   241 sec   (2197 perm/sec)   p_kst 5.622642e-04   p_cons 1.941566e-01   p_joint 1.320755e-04

Joint ci ratio: 4.556591e-01	ci left: 1.059651e-04	ci right 1.699721e-04	k: 73	n:540000
Cons ci ratio: 1.086839e-02	ci left: 1.930809e-01	ci right 1.951927e-01	k: 104833	n:540000
KS ci ratio: 2.247639e-01	ci left: 4.997184e-04	ci right 6.279609e-04	k: 303	n:540000
CTNNB1   540000 perm   248 sec   (2180 perm/sec)   p_kst 5.611111e-04   p_cons 1.941352e-01   p_joint 1.351852e-04

Joint ci ratio: 4.556597e-01	ci left: 1.040384e-04	ci right 1.668818e-04	k: 73	n:550000
Cons ci ratio: 1.076991e-02	ci left: 1.930682e-01	ci right 1.951605e-01	k: 106762	n:550000
KS ci ratio: 2.229382e-01	ci left: 4.992138e-04	ci right 6.261432e-04	k: 308	n:550000
CTNNB1   550000 perm   254 sec   (2163 perm/sec)   p_kst 5.600000e-04   p_cons 1.941127e-01   p_joint 1.327273e-04

Joint ci ratio: 4.496239e-01	ci left: 1.053447e-04	ci right 1.678778e-04	k: 75	n:560000
Cons ci ratio: 1.067424e-02	ci left: 1.930506e-01	ci right 1.951240e-01	k: 108688	n:560000
KS ci ratio: 2.201066e-01	ci left: 5.037925e-04	ci right 6.300390e-04	k: 316	n:560000
CTNNB1   560000 perm   262 sec   (2138 perm/sec)   p_kst 5.642857e-04   p_cons 1.940857e-01   p_joint 1.339286e-04

Joint ci ratio: 4.382382e-01	ci left: 1.097296e-04	ci right 1.727296e-04	k: 79	n:570000
Cons ci ratio: 1.058286e-02	ci left: 1.929811e-01	ci right 1.950360e-01	k: 110584	n:570000
KS ci ratio: 2.157262e-01	ci left: 5.165168e-04	ci right 6.430350e-04	k: 329	n:570000
CTNNB1   570000 perm   268 sec   (2123 perm/sec)   p_kst 5.771930e-04   p_cons 1.940070e-01   p_joint 1.385965e-04

Joint ci ratio: 4.328606e-01	ci left: 1.109079e-04	ci right 1.735757e-04	k: 81	n:580000
Cons ci ratio: 1.048736e-02	ci left: 1.931052e-01	ci right 1.951427e-01	k: 112591	n:580000
KS ci ratio: 2.141104e-01	ci left: 5.157680e-04	ci right 6.410322e-04	k: 334	n:580000
CTNNB1   580000 perm   275 sec   (2107 perm/sec)   p_kst 5.758621e-04   p_cons 1.941224e-01   p_joint 1.396552e-04

Joint ci ratio: 4.302453e-01	ci left: 1.105388e-04	ci right 1.725117e-04	k: 82	n:590000
Cons ci ratio: 1.040392e-02	ci left: 1.929392e-01	ci right 1.949587e-01	k: 114429	n:590000
KS ci ratio: 2.122184e-01	ci left: 5.166528e-04	ci right 6.408788e-04	k: 340	n:590000
CTNNB1   590000 perm   282 sec   (2089 perm/sec)   p_kst 5.762712e-04   p_cons 1.939475e-01   p_joint 1.389831e-04

Joint ci ratio: 4.202373e-01	ci left: 1.146497e-04	ci right 1.770125e-04	k: 86	n:600000
Cons ci ratio: 1.031782e-02	ci left: 1.929186e-01	ci right 1.949210e-01	k: 116351	n:600000
KS ci ratio: 2.097716e-01	ci left: 5.206709e-04	ci right 6.442341e-04	k: 348	n:600000
CTNNB1   600000 perm   289 sec   (2075 perm/sec)   p_kst 5.800000e-04   p_cons 1.939183e-01   p_joint 1.433333e-04

Joint ci ratio: 4.131735e-01	ci left: 1.171726e-04	ci right 1.795415e-04	k: 89	n:610000
Cons ci ratio: 1.023270e-02	ci left: 1.929331e-01	ci right 1.949190e-01	k: 118294	n:610000
KS ci ratio: 2.079913e-01	ci left: 5.214569e-04	ci right 6.440227e-04	k: 354	n:610000
CTNNB1   610000 perm   299 sec   (2042 perm/sec)   p_kst 5.803279e-04   p_cons 1.939246e-01   p_joint 1.459016e-04

Joint ci ratio: 4.108972e-01	ci left: 1.167284e-04	ci right 1.784249e-04	k: 90	n:620000
Cons ci ratio: 1.014902e-02	ci left: 1.929664e-01	ci right 1.949364e-01	k: 120249	n:620000
KS ci ratio: 2.065420e-01	ci left: 5.206922e-04	ci right 6.421178e-04	k: 359	n:620000
CTNNB1   620000 perm   306 sec   (2026 perm/sec)   p_kst 5.790323e-04   p_cons 1.939500e-01   p_joint 1.451613e-04

Joint ci ratio: 4.064547e-01	ci left: 1.177238e-04	ci right 1.790920e-04	k: 92	n:630000
Cons ci ratio: 1.007022e-02	ci left: 1.929101e-01	ci right 1.948641e-01	k: 122148	n:630000
KS ci ratio: 2.045626e-01	ci left: 5.229665e-04	ci right 6.436076e-04	k: 366	n:630000
CTNNB1   630000 perm   313 sec   (2012 perm/sec)   p_kst 5.809524e-04   p_cons 1.938857e-01   p_joint 1.460317e-04

Joint ci ratio: 4.000530e-01	ci left: 1.200964e-04	ci right 1.814542e-04	k: 95	n:640000
Cons ci ratio: 9.991577e-03	ci left: 1.929071e-01	ci right 1.948457e-01	k: 124080	n:640000
KS ci ratio: 2.029106e-01	ci left: 5.236920e-04	ci right 6.434038e-04	k: 372	n:640000
CTNNB1   640000 perm   320 sec   (2000 perm/sec)   p_kst 5.812500e-04   p_cons 1.938750e-01   p_joint 1.484375e-04

Joint ci ratio: 3.979857e-01	ci left: 1.196328e-04	ci right 1.803546e-04	k: 96	n:650000
Cons ci ratio: 9.913775e-03	ci left: 1.929349e-01	ci right 1.948586e-01	k: 126032	n:650000
KS ci ratio: 2.012980e-01	ci left: 5.243988e-04	ci right 6.432026e-04	k: 378	n:650000
CTNNB1   650000 perm   327 sec   (1985 perm/sec)   p_kst 5.815385e-04   p_cons 1.938954e-01   p_joint 1.476923e-04

Joint ci ratio: 3.939450e-01	ci left: 1.205488e-04	ci right 1.809525e-04	k: 98	n:660000
Cons ci ratio: 9.837095e-03	ci left: 1.929831e-01	ci right 1.948923e-01	k: 127998	n:660000
KS ci ratio: 1.989492e-01	ci left: 5.294066e-04	ci right 6.477757e-04	k: 387	n:660000
CTNNB1   660000 perm   335 sec   (1972 perm/sec)   p_kst 5.863636e-04   p_cons 1.939364e-01   p_joint 1.484848e-04

Joint ci ratio: 3.881080e-01	ci left: 1.227869e-04	ci right 1.831674e-04	k: 101	n:670000
Cons ci ratio: 9.757883e-03	ci left: 1.931670e-01	ci right 1.950626e-01	k: 130056	n:670000
KS ci ratio: 1.964333e-01	ci left: 5.356918e-04	ci right 6.537703e-04	k: 397	n:670000
CTNNB1   670000 perm   342 sec   (1959 perm/sec)   p_kst 5.925373e-04   p_cons 1.941134e-01   p_joint 1.507463e-04

Joint ci ratio: 3.789306e-01	ci left: 1.276254e-04	ci right 1.885321e-04	k: 106	n:680000
Cons ci ratio: 9.685283e-03	ci left: 1.931928e-01	ci right 1.950745e-01	k: 132010	n:680000
KS ci ratio: 1.949692e-01	ci left: 5.362052e-04	ci right 6.534113e-04	k: 403	n:680000
CTNNB1   680000 perm   349 sec   (1946 perm/sec)   p_kst 5.926471e-04   p_cons 1.941324e-01   p_joint 1.558824e-04

Joint ci ratio: 3.737273e-01	ci left: 1.297124e-04	ci right 1.905570e-04	k: 109	n:690000
Cons ci ratio: 9.615215e-03	ci left: 1.931876e-01	ci right 1.950555e-01	k: 133943	n:690000
KS ci ratio: 1.930667e-01	ci left: 5.394653e-04	ci right 6.560982e-04	k: 411	n:690000
CTNNB1   690000 perm   357 sec   (1934 perm/sec)   p_kst 5.956522e-04   p_cons 1.941203e-01   p_joint 1.579710e-04

Joint ci ratio: 3.687326e-01	ci left: 1.317453e-04	ci right 1.925184e-04	k: 112	n:700000
Cons ci ratio: 9.545426e-03	ci left: 1.932225e-01	ci right 1.950772e-01	k: 135904	n:700000
KS ci ratio: 1.912189e-01	ci left: 5.426375e-04	ci right 6.587029e-04	k: 419	n:700000
CTNNB1   700000 perm   364 sec   (1922 perm/sec)   p_kst 5.985714e-04   p_cons 1.941486e-01   p_joint 1.600000e-04

Joint ci ratio: 3.687330e-01	ci left: 1.298897e-04	ci right 1.898070e-04	k: 112	n:710000
Cons ci ratio: 9.481487e-03	ci left: 1.931131e-01	ci right 1.949542e-01	k: 137763	n:710000
KS ci ratio: 1.900909e-01	ci left: 5.417009e-04	ci right 6.568034e-04	k: 424	n:710000
CTNNB1   710000 perm   372 sec   (1909 perm/sec)   p_kst 5.971831e-04   p_cons 1.940324e-01   p_joint 1.577465e-04

Joint ci ratio: 3.655124e-01	ci left: 1.306072e-04	ci right 1.902037e-04	k: 114	n:720000
Cons ci ratio: 9.416682e-03	ci left: 1.930775e-01	ci right 1.949056e-01	k: 139673	n:720000
KS ci ratio: 1.878927e-01	ci left: 5.474092e-04	ci right 6.622262e-04	k: 434	n:720000
CTNNB1   720000 perm   380 sec   (1896 perm/sec)   p_kst 6.027778e-04   p_cons 1.939903e-01   p_joint 1.583333e-04

Joint ci ratio: 3.578157e-01	ci left: 1.350451e-04	ci right 1.950671e-04	k: 119	n:730000
Cons ci ratio: 9.352614e-03	ci left: 1.930620e-01	ci right 1.948774e-01	k: 141597	n:730000
KS ci ratio: 1.853527e-01	ci left: 5.555811e-04	ci right 6.703598e-04	k: 446	n:730000
CTNNB1   730000 perm   388 sec   (1883 perm/sec)   p_kst 6.109589e-04   p_cons 1.939685e-01   p_joint 1.630137e-04

Joint ci ratio: 3.548706e-01	ci left: 1.356810e-04	ci right 1.953747e-04	k: 121	n:740000
Cons ci ratio: 9.290478e-03	ci left: 1.930254e-01	ci right 1.948284e-01	k: 143505	n:740000
KS ci ratio: 1.831128e-01	ci left: 5.622527e-04	ci right 6.768502e-04	k: 457	n:740000
CTNNB1   740000 perm   395 sec   (1872 perm/sec)   p_kst 6.175676e-04   p_cons 1.939257e-01   p_joint 1.635135e-04

Joint ci ratio: 3.519971e-01	ci left: 1.363018e-04	ci right 1.956721e-04	k: 123	n:750000
Cons ci ratio: 9.226888e-03	ci left: 1.930803e-01	ci right 1.948714e-01	k: 145481	n:750000
KS ci ratio: 1.821215e-01	ci left: 5.611179e-04	ci right 6.747967e-04	k: 462	n:750000
CTNNB1   750000 perm   403 sec   (1860 perm/sec)   p_kst 6.160000e-04   p_cons 1.939747e-01   p_joint 1.640000e-04

Joint ci ratio: 3.491922e-01	ci left: 1.369082e-04	ci right 1.959599e-04	k: 125	n:760000
Cons ci ratio: 9.164741e-03	ci left: 1.931286e-01	ci right 1.949080e-01	k: 147453	n:760000
KS ci ratio: 1.809528e-01	ci left: 5.612708e-04	ci right 6.741709e-04	k: 468	n:760000
CTNNB1   760000 perm   411 sec   (1848 perm/sec)   p_kst 6.157895e-04   p_cons 1.940171e-01   p_joint 1.644737e-04

Joint ci ratio: 3.478148e-01	ci left: 1.363152e-04	ci right 1.948269e-04	k: 126	n:770000
Cons ci ratio: 9.104059e-03	ci left: 1.931678e-01	ci right 1.949358e-01	k: 149419	n:770000
KS ci ratio: 1.798063e-01	ci left: 5.614219e-04	ci right 6.735591e-04	k: 474	n:770000
CTNNB1   770000 perm   419 sec   (1836 perm/sec)   p_kst 6.155844e-04   p_cons 1.940506e-01   p_joint 1.636364e-04

Joint ci ratio: 3.451080e-01	ci left: 1.369086e-04	ci right 1.951155e-04	k: 128	n:780000
Cons ci ratio: 9.045679e-03	ci left: 1.931677e-01	ci right 1.949243e-01	k: 151355	n:780000
KS ci ratio: 1.777593e-01	ci left: 5.676959e-04	ci right 6.796565e-04	k: 485	n:780000
CTNNB1   780000 perm   429 sec   (1820 perm/sec)   p_kst 6.217949e-04   p_cons 1.940449e-01   p_joint 1.641026e-04

Joint ci ratio: 3.437782e-01	ci left: 1.363319e-04	ci right 1.940206e-04	k: 129	n:790000
Cons ci ratio: 8.987281e-03	ci left: 1.932069e-01	ci right 1.949523e-01	k: 153322	n:790000
KS ci ratio: 1.770325e-01	ci left: 5.653483e-04	ci right 6.763412e-04	k: 489	n:790000
CTNNB1   790000 perm   439 sec   (1800 perm/sec)   p_kst 6.189873e-04   p_cons 1.940785e-01   p_joint 1.632911e-04

Joint ci ratio: 3.411638e-01	ci left: 1.369128e-04	ci right 1.943095e-04	k: 131	n:800000
Cons ci ratio: 8.932568e-03	ci left: 1.931552e-01	ci right 1.948895e-01	k: 155217	n:800000
KS ci ratio: 1.761363e-01	ci left: 5.642551e-04	ci right 6.744130e-04	k: 494	n:800000
CTNNB1   800000 perm   453 sec   (1766 perm/sec)   p_kst 6.175000e-04   p_cons 1.940213e-01   p_joint 1.637500e-04

Joint ci ratio: 3.411642e-01	ci left: 1.352225e-04	ci right 1.919106e-04	k: 131	n:810000
Cons ci ratio: 8.876039e-03	ci left: 1.932034e-01	ci right 1.949272e-01	k: 157192	n:810000
KS ci ratio: 1.756053e-01	ci left: 5.608296e-04	ci right 6.699536e-04	k: 497	n:810000
CTNNB1   810000 perm   463 sec   (1751 perm/sec)   p_kst 6.135802e-04   p_cons 1.940642e-01   p_joint 1.617284e-04

Joint ci ratio: 3.398793e-01	ci left: 1.346886e-04	ci right 1.908937e-04	k: 132	n:820000
Cons ci ratio: 8.823046e-03	ci left: 1.931629e-01	ci right 1.948759e-01	k: 159095	n:820000
KS ci ratio: 1.740394e-01	ci left: 5.644857e-04	ci right 6.732387e-04	k: 506	n:820000
CTNNB1   820000 perm   471 sec   (1741 perm/sec)   p_kst 6.170732e-04   p_cons 1.940183e-01   p_joint 1.609756e-04

Joint ci ratio: 3.398797e-01	ci left: 1.330659e-04	ci right 1.885938e-04	k: 132	n:830000
Cons ci ratio: 8.769944e-03	ci left: 1.931606e-01	ci right 1.948632e-01	k: 161029	n:830000
KS ci ratio: 1.723476e-01	ci left: 5.692107e-04	ci right 6.776972e-04	k: 516	n:830000
CTNNB1   830000 perm   480 sec   (1730 perm/sec)   p_kst 6.216867e-04   p_cons 1.940108e-01   p_joint 1.590361e-04

Joint ci ratio: 3.348807e-01	ci left: 1.358403e-04	ci right 1.915124e-04	k: 136	n:840000
Cons ci ratio: 8.716130e-03	ci left: 1.932178e-01	ci right 1.949105e-01	k: 163013	n:840000
KS ci ratio: 1.711925e-01	ci left: 5.704095e-04	ci right 6.783206e-04	k: 523	n:840000
CTNNB1   840000 perm   489 sec   (1719 perm/sec)   p_kst 6.226190e-04   p_cons 1.940631e-01   p_joint 1.619048e-04

Joint ci ratio: 3.289314e-01	ci left: 1.396345e-04	ci right 1.956299e-04	k: 141	n:850000
Cons ci ratio: 8.664304e-03	ci left: 1.932373e-01	ci right 1.949200e-01	k: 164966	n:850000
KS ci ratio: 1.699003e-01	ci left: 5.727089e-04	ci right 6.801534e-04	k: 531	n:850000
CTNNB1   850000 perm   497 sec   (1710 perm/sec)   p_kst 6.247059e-04   p_cons 1.940776e-01   p_joint 1.658824e-04

Joint ci ratio: 3.277794e-01	ci left: 1.390778e-04	ci right 1.946135e-04	k: 142	n:860000
Cons ci ratio: 8.616851e-03	ci left: 1.931311e-01	ci right 1.948036e-01	k: 166811	n:860000
KS ci ratio: 1.691076e-01	ci left: 5.716168e-04	ci right 6.783050e-04	k: 536	n:860000
CTNNB1   860000 perm   506 sec   (1700 perm/sec)   p_kst 6.232558e-04   p_cons 1.939663e-01   p_joint 1.651163e-04

Joint ci ratio: 3.255110e-01	ci left: 1.395896e-04	ci right 1.948632e-04	k: 144	n:870000
Cons ci ratio: 8.564972e-03	ci left: 1.932166e-01	ci right 1.948797e-01	k: 168821	n:870000
KS ci ratio: 1.678617e-01	ci left: 5.738542e-04	ci right 6.800911e-04	k: 544	n:870000
CTNNB1   870000 perm   515 sec   (1691 perm/sec)   p_kst 6.252874e-04   p_cons 1.940471e-01   p_joint 1.655172e-04

Joint ci ratio: 3.255113e-01	ci left: 1.380033e-04	ci right 1.926489e-04	k: 144	n:880000
Cons ci ratio: 8.514760e-03	ci left: 1.932730e-01	ci right 1.949268e-01	k: 170807	n:880000
KS ci ratio: 1.667938e-01	ci left: 5.749546e-04	ci right 6.806501e-04	k: 551	n:880000
CTNNB1   880000 perm   523 sec   (1681 perm/sec)   p_kst 6.261364e-04   p_cons 1.940989e-01   p_joint 1.636364e-04

Joint ci ratio: 3.211118e-01	ci left: 1.405824e-04	ci right 1.953421e-04	k: 148	n:890000
Cons ci ratio: 8.464935e-03	ci left: 1.933461e-01	ci right 1.949908e-01	k: 172809	n:890000
KS ci ratio: 1.657462e-01	ci left: 5.760323e-04	ci right 6.811945e-04	k: 558	n:890000
CTNNB1   890000 perm   532 sec   (1672 perm/sec)   p_kst 6.269663e-04   p_cons 1.941674e-01   p_joint 1.662921e-04

Joint ci ratio: 3.179270e-01	ci left: 1.420865e-04	ci right 1.967714e-04	k: 151	n:900000
Cons ci ratio: 8.419560e-03	ci left: 1.932844e-01	ci right 1.949198e-01	k: 174691	n:900000
KS ci ratio: 1.648638e-01	ci left: 5.760228e-04	ci right 6.805679e-04	k: 564	n:900000
CTNNB1   900000 perm   543 sec   (1659 perm/sec)   p_kst 6.266667e-04   p_cons 1.941011e-01   p_joint 1.677778e-04

Joint ci ratio: 3.158557e-01	ci left: 1.425481e-04	ci right 1.969811e-04	k: 153	n:910000
Cons ci ratio: 8.371760e-03	ci left: 1.933416e-01	ci right 1.949681e-01	k: 176680	n:910000
KS ci ratio: 1.637087e-01	ci left: 5.781227e-04	ci right 6.822414e-04	k: 572	n:910000
CTNNB1   910000 perm   552 sec   (1650 perm/sec)   p_kst 6.285714e-04   p_cons 1.941538e-01   p_joint 1.681319e-04

Joint ci ratio: 3.128232e-01	ci left: 1.440023e-04	ci right 1.983572e-04	k: 156	n:920000
Cons ci ratio: 8.326703e-03	ci left: 1.933248e-01	ci right 1.949423e-01	k: 178602	n:920000
KS ci ratio: 1.624377e-01	ci left: 5.812223e-04	ci right 6.850071e-04	k: 581	n:920000
CTNNB1   920000 perm   561 sec   (1640 perm/sec)   p_kst 6.315217e-04   p_cons 1.941326e-01   p_joint 1.695652e-04

Joint ci ratio: 3.098764e-01	ci left: 1.454277e-04	ci right 1.997014e-04	k: 159	n:930000
Cons ci ratio: 8.279804e-03	ci left: 1.934050e-01	ci right 1.950141e-01	k: 180614	n:930000
KS ci ratio: 1.616069e-01	ci left: 5.811626e-04	ci right 6.843544e-04	k: 587	n:930000
CTNNB1   930000 perm   571 sec   (1629 perm/sec)   p_kst 6.311828e-04   p_cons 1.942086e-01   p_joint 1.709677e-04

Joint ci ratio: 3.089127e-01	ci left: 1.448619e-04	ci right 1.987231e-04	k: 160	n:940000
Cons ci ratio: 8.234052e-03	ci left: 1.934698e-01	ci right 1.950704e-01	k: 182613	n:940000
KS ci ratio: 1.610602e-01	ci left: 5.790635e-04	ci right 6.815011e-04	k: 591	n:940000
CTNNB1   940000 perm   580 sec   (1619 perm/sec)   p_kst 6.287234e-04   p_cons 1.942691e-01   p_joint 1.702128e-04

Joint ci ratio: 3.060740e-01	ci left: 1.462513e-04	ci right 2.000320e-04	k: 163	n:950000
Cons ci ratio: 8.189684e-03	ci left: 1.935090e-01	ci right 1.951013e-01	k: 184589	n:950000
KS ci ratio: 1.601163e-01	ci left: 5.800404e-04	ci right 6.819917e-04	k: 598	n:950000
CTNNB1   950000 perm   590 sec   (1610 perm/sec)   p_kst 6.294737e-04   p_cons 1.943042e-01   p_joint 1.715789e-04

Joint ci ratio: 3.024079e-01	ci left: 1.485765e-04	ci right 2.024320e-04	k: 167	n:960000
Cons ci ratio: 8.146133e-03	ci left: 1.935433e-01	ci right 1.951273e-01	k: 186561	n:960000
KS ci ratio: 1.589266e-01	ci left: 5.829991e-04	ci right 6.846364e-04	k: 607	n:960000
CTNNB1   960000 perm   600 sec   (1601 perm/sec)   p_kst 6.322917e-04   p_cons 1.943344e-01   p_joint 1.739583e-04

Joint ci ratio: 3.015120e-01	ci left: 1.479976e-04	ci right 2.014539e-04	k: 168	n:970000
Cons ci ratio: 8.103910e-03	ci left: 1.935521e-01	ci right 1.951280e-01	k: 188509	n:970000
KS ci ratio: 1.576352e-01	ci left: 5.868899e-04	ci right 6.882955e-04	k: 617	n:970000
CTNNB1   970000 perm   609 sec   (1592 perm/sec)   p_kst 6.360825e-04   p_cons 1.943392e-01   p_joint 1.731959e-04

Joint ci ratio: 3.006240e-01	ci left: 1.474308e-04	ci right 2.004955e-04	k: 169	n:980000
Cons ci ratio: 8.061417e-03	ci left: 1.935965e-01	ci right 1.951645e-01	k: 190492	n:980000
KS ci ratio: 1.571277e-01	ci left: 5.848220e-04	ci right 6.855144e-04	k: 621	n:980000
CTNNB1   980000 perm   619 sec   (1583 perm/sec)   p_kst 6.336735e-04   p_cons 1.943796e-01   p_joint 1.724490e-04

Joint ci ratio: 2.997439e-01	ci left: 1.468756e-04	ci right 1.995563e-04	k: 170	n:990000
Cons ci ratio: 8.018784e-03	ci left: 1.936713e-01	ci right 1.952315e-01	k: 192506	n:990000
KS ci ratio: 1.562509e-01	ci left: 5.857082e-04	ci right 6.859377e-04	k: 628	n:990000
CTNNB1   990000 perm   629 sec   (1575 perm/sec)   p_kst 6.343434e-04   p_cons 1.944505e-01   p_joint 1.717172e-04

Joint ci ratio: 2.962981e-01	ci left: 1.491079e-04	ci right 2.018589e-04	k: 174	n:1000000
Cons ci ratio: 7.977228e-03	ci left: 1.937286e-01	ci right 1.952812e-01	k: 194504	n:1000000
KS ci ratio: 1.555110e-01	ci left: 5.856171e-04	ci right 6.853122e-04	k: 634	n:1000000
CTNNB1   1000000 perm   639 sec   (1565 perm/sec)   p_kst 6.340000e-04   p_cons 1.945040e-01   p_joint 1.740000e-04

Joint ci ratio: 2.946193e-01	ci left: 1.494650e-04	ci right 2.019868e-04	k: 176	n:1010000
Cons ci ratio: 7.939923e-03	ci left: 1.936424e-01	ci right 1.951870e-01	k: 196358	n:1010000
KS ci ratio: 1.546608e-01	ci left: 5.864807e-04	ci right 6.857263e-04	k: 641	n:1010000
CTNNB1   1010000 perm   649 sec   (1557 perm/sec)   p_kst 6.346535e-04   p_cons 1.944139e-01   p_joint 1.742574e-04

Joint ci ratio: 2.929687e-01	ci left: 1.498160e-04	ci right 2.021114e-04	k: 178	n:1020000
Cons ci ratio: 7.900514e-03	ci left: 1.936618e-01	ci right 1.951988e-01	k: 198318	n:1020000
KS ci ratio: 1.543010e-01	ci left: 5.835583e-04	ci right 6.820584e-04	k: 644	n:1020000
CTNNB1   1020000 perm   659 sec   (1548 perm/sec)   p_kst 6.313725e-04   p_cons 1.944294e-01   p_joint 1.745098e-04

Joint ci ratio: 2.921539e-01	ci left: 1.492611e-04	ci right 2.011911e-04	k: 179	n:1030000
Cons ci ratio: 7.862027e-03	ci left: 1.936671e-01	ci right 1.951967e-01	k: 200264	n:1030000
KS ci ratio: 1.539436e-01	ci left: 5.806929e-04	ci right 6.784614e-04	k: 647	n:1030000
CTNNB1   1030000 perm   669 sec   (1540 perm/sec)   p_kst 6.281553e-04   p_cons 1.944311e-01   p_joint 1.737864e-04

Joint ci ratio: 2.905442e-01	ci left: 1.496084e-04	ci right 2.013198e-04	k: 181	n:1040000
Cons ci ratio: 7.825010e-03	ci left: 1.936360e-01	ci right 1.951580e-01	k: 202172	n:1040000
KS ci ratio: 1.530019e-01	ci left: 5.825063e-04	ci right 6.799252e-04	k: 655	n:1040000
CTNNB1   1040000 perm   679 sec   (1531 perm/sec)   p_kst 6.298077e-04   p_cons 1.943962e-01   p_joint 1.740385e-04

Joint ci ratio: 2.889608e-01	ci left: 1.499499e-04	ci right 2.014452e-04	k: 183	n:1050000
Cons ci ratio: 7.787824e-03	ci left: 1.936330e-01	ci right 1.951478e-01	k: 204109	n:1050000
KS ci ratio: 1.523070e-01	ci left: 5.824546e-04	ci right 6.793821e-04	k: 661	n:1050000
CTNNB1   1050000 perm   690 sec   (1523 perm/sec)   p_kst 6.295238e-04   p_cons 1.943895e-01   p_joint 1.742857e-04

Joint ci ratio: 2.881788e-01	ci left: 1.494104e-04	ci right 2.005563e-04	k: 184	n:1060000
Cons ci ratio: 7.752307e-03	ci left: 1.935839e-01	ci right 1.950914e-01	k: 205997	n:1060000
KS ci ratio: 1.516215e-01	ci left: 5.824049e-04	ci right 6.788483e-04	k: 667	n:1060000
CTNNB1   1060000 perm   700 sec   (1515 perm/sec)   p_kst 6.292453e-04   p_cons 1.943368e-01   p_joint 1.735849e-04

Joint ci ratio: 2.866336e-01	ci left: 1.497485e-04	ci right 2.006855e-04	k: 186	n:1070000
Cons ci ratio: 7.715959e-03	ci left: 1.935889e-01	ci right 1.950894e-01	k: 207942	n:1070000
KS ci ratio: 1.509451e-01	ci left: 5.823571e-04	ci right 6.783235e-04	k: 673	n:1070000
CTNNB1   1070000 perm   710 sec   (1507 perm/sec)   p_kst 6.289720e-04   p_cons 1.943383e-01   p_joint 1.738318e-04

Joint ci ratio: 2.843615e-01	ci left: 1.509409e-04	ci right 2.018034e-04	k: 189	n:1080000
Cons ci ratio: 7.680594e-03	ci left: 1.935745e-01	ci right 1.950679e-01	k: 209866	n:1080000
KS ci ratio: 1.502777e-01	ci left: 5.823111e-04	ci right 6.778075e-04	k: 679	n:1080000
CTNNB1   1080000 perm   720 sec   (1499 perm/sec)   p_kst 6.287037e-04   p_cons 1.943204e-01   p_joint 1.750000e-04

Joint ci ratio: 2.836163e-01	ci left: 1.504082e-04	ci right 2.009346e-04	k: 190	n:1090000
Cons ci ratio: 7.646294e-03	ci left: 1.935365e-01	ci right 1.950229e-01	k: 211764	n:1090000
KS ci ratio: 1.491845e-01	ci left: 5.857994e-04	ci right 6.811067e-04	k: 689	n:1090000
CTNNB1   1090000 perm   731 sec   (1490 perm/sec)   p_kst 6.321101e-04   p_cons 1.942789e-01   p_joint 1.743119e-04

Joint ci ratio: 1.479036e-01	ci left: 5.909777e-04	ci right 6.862290e-04	k: 701	n:1100000
Cons ci ratio: 6.658078e-03	ci left: 2.388171e-01	ci right 2.404134e-01	k: 263576	n:1100000
KS ci ratio: 1.479036e-01	ci left: 5.909777e-04	ci right 6.862290e-04	k: 701	n:1100000
CTNNB1   1100000 perm   742 sec   (1482 perm/sec)   p_kst 6.372727e-04   p_cons 2.396145e-01   p_joint 6.372727e-04

Joint ci ratio: 1.473797e-01	ci left: 5.899917e-04	ci right 6.847176e-04	k: 706	n:1110000
Cons ci ratio: 6.628071e-03	ci left: 2.388179e-01	ci right 2.404069e-01	k: 265969	n:1110000
KS ci ratio: 1.473797e-01	ci left: 5.899917e-04	ci right 6.847176e-04	k: 706	n:1110000
CTNNB1   1110000 perm   753 sec   (1474 perm/sec)   p_kst 6.360360e-04   p_cons 2.396117e-01   p_joint 6.360360e-04

Joint ci ratio: 1.467584e-01	ci left: 5.898839e-04	ci right 6.841581e-04	k: 712	n:1120000
Cons ci ratio: 6.598594e-03	ci left: 2.388115e-01	ci right 2.403934e-01	k: 268354	n:1120000
KS ci ratio: 1.467584e-01	ci left: 5.898839e-04	ci right 6.841581e-04	k: 712	n:1120000
CTNNB1   1120000 perm   764 sec   (1466 perm/sec)   p_kst 6.357143e-04   p_cons 2.396018e-01   p_joint 6.357143e-04

Joint ci ratio: 1.459418e-01	ci left: 5.914842e-04	ci right 6.854423e-04	k: 720	n:1130000
Cons ci ratio: 6.569460e-03	ci left: 2.388079e-01	ci right 2.403828e-01	k: 270742	n:1130000
KS ci ratio: 1.459418e-01	ci left: 5.914842e-04	ci right 6.854423e-04	k: 720	n:1130000
CTNNB1   1130000 perm   775 sec   (1458 perm/sec)   p_kst 6.371681e-04   p_cons 2.395947e-01   p_joint 6.371681e-04

Joint ci ratio: 1.453383e-01	ci left: 5.913671e-04	ci right 6.848845e-04	k: 726	n:1140000
Cons ci ratio: 6.539119e-03	ci left: 2.388929e-01	ci right 2.404610e-01	k: 273231	n:1140000
KS ci ratio: 1.453383e-01	ci left: 5.913671e-04	ci right 6.848845e-04	k: 726	n:1140000
CTNNB1   1140000 perm   787 sec   (1449 perm/sec)   p_kst 6.368421e-04   p_cons 2.396763e-01   p_joint 6.368421e-04

Joint ci ratio: 1.450396e-01	ci left: 5.887386e-04	ci right 6.816324e-04	k: 729	n:1150000
Cons ci ratio: 6.510762e-03	ci left: 2.388887e-01	ci right 2.404500e-01	k: 275619	n:1150000
KS ci ratio: 1.450396e-01	ci left: 5.887386e-04	ci right 6.816324e-04	k: 729	n:1150000
CTNNB1   1150000 perm   798 sec   (1441 perm/sec)   p_kst 6.339130e-04   p_cons 2.396687e-01   p_joint 6.339130e-04

Joint ci ratio: 1.441535e-01	ci left: 5.911413e-04	ci right 6.837953e-04	k: 738	n:1160000
Cons ci ratio: 6.483568e-03	ci left: 2.388398e-01	ci right 2.403942e-01	k: 277955	n:1160000
KS ci ratio: 1.441535e-01	ci left: 5.911413e-04	ci right 6.837953e-04	k: 738	n:1160000
CTNNB1   1160000 perm   809 sec   (1434 perm/sec)   p_kst 6.362069e-04   p_cons 2.396164e-01   p_joint 6.362069e-04

Joint ci ratio: 1.437651e-01	ci left: 5.893844e-04	ci right 6.814929e-04	k: 742	n:1170000
Cons ci ratio: 6.456258e-03	ci left: 2.388174e-01	ci right 2.403651e-01	k: 280321	n:1170000
KS ci ratio: 1.437651e-01	ci left: 5.893844e-04	ci right 6.814929e-04	k: 742	n:1170000
CTNNB1   1170000 perm   820 sec   (1427 perm/sec)   p_kst 6.341880e-04   p_cons 2.395906e-01   p_joint 6.341880e-04

Joint ci ratio: 1.431882e-01	ci left: 5.892918e-04	ci right 6.809846e-04	k: 748	n:1180000
Cons ci ratio: 6.428812e-03	ci left: 2.388225e-01	ci right 2.403636e-01	k: 282719	n:1180000
KS ci ratio: 1.431882e-01	ci left: 5.892918e-04	ci right 6.809846e-04	k: 748	n:1180000
CTNNB1   1180000 perm   831 sec   (1420 perm/sec)   p_kst 6.338983e-04   p_cons 2.395924e-01   p_joint 6.338983e-04

Joint ci ratio: 1.425237e-01	ci left: 5.900119e-04	ci right 6.813545e-04	k: 755	n:1190000
Cons ci ratio: 6.401580e-03	ci left: 2.388350e-01	ci right 2.403696e-01	k: 285126	n:1190000
KS ci ratio: 1.425237e-01	ci left: 5.900119e-04	ci right 6.813545e-04	k: 755	n:1190000
CTNNB1   1190000 perm   842 sec   (1413 perm/sec)   p_kst 6.344538e-04   p_cons 2.396017e-01   p_joint 6.344538e-04

Joint ci ratio: 1.417754e-01	ci left: 5.915248e-04	ci right 6.825801e-04	k: 763	n:1200000
Cons ci ratio: 6.374793e-03	ci left: 2.388415e-01	ci right 2.403697e-01	k: 287526	n:1200000
KS ci ratio: 1.417754e-01	ci left: 5.915248e-04	ci right 6.825801e-04	k: 763	n:1200000
CTNNB1   1200000 perm   853 sec   (1406 perm/sec)   p_kst 6.358333e-04   p_cons 2.396050e-01   p_joint 6.358333e-04

Joint ci ratio: 1.414059e-01	ci left: 5.898248e-04	ci right 6.803618e-04	k: 767	n:1210000
Cons ci ratio: 6.348325e-03	ci left: 2.388488e-01	ci right 2.403707e-01	k: 289927	n:1210000
KS ci ratio: 1.414059e-01	ci left: 5.898248e-04	ci right 6.803618e-04	k: 767	n:1210000
CTNNB1   1210000 perm   865 sec   (1399 perm/sec)   p_kst 6.338843e-04   p_cons 2.396091e-01   p_joint 6.338843e-04

Joint ci ratio: 1.408567e-01	ci left: 5.897345e-04	ci right 6.798767e-04	k: 773	n:1220000
Cons ci ratio: 6.322426e-03	ci left: 2.388420e-01	ci right 2.403576e-01	k: 292311	n:1220000
KS ci ratio: 1.408567e-01	ci left: 5.897345e-04	ci right 6.798767e-04	k: 773	n:1220000
CTNNB1   1220000 perm   876 sec   (1393 perm/sec)   p_kst 6.336066e-04   p_cons 2.395992e-01   p_joint 6.336066e-04

Joint ci ratio: 1.404040e-01	ci left: 5.888619e-04	ci right 6.785572e-04	k: 778	n:1230000
Cons ci ratio: 6.296546e-03	ci left: 2.388524e-01	ci right 2.403619e-01	k: 294716	n:1230000
KS ci ratio: 1.404040e-01	ci left: 5.888619e-04	ci right 6.785572e-04	k: 778	n:1230000
CTNNB1   1230000 perm   888 sec   (1386 perm/sec)   p_kst 6.325203e-04   p_cons 2.396065e-01   p_joint 6.325203e-04

Joint ci ratio: 1.356928e-01	ci left: 6.269372e-04	ci right 7.189693e-04	k: 833	n:1240000
Cons ci ratio: 6.270870e-03	ci left: 2.388691e-01	ci right 2.403725e-01	k: 297129	n:1240000
KS ci ratio: 1.395998e-01	ci left: 5.911169e-04	ci right 6.805971e-04	k: 787	n:1240000
CTNNB1   1240000 perm   900 sec   (1379 perm/sec)   p_kst 6.346774e-04   p_cons 2.396202e-01   p_joint 6.717742e-04

Joint ci ratio: 1.254915e-01	ci left: 7.310446e-04	ci right 8.296922e-04	k: 974	n:1250000
Cons ci ratio: 6.245712e-03	ci left: 2.388735e-01	ci right 2.403709e-01	k: 299527	n:1250000
KS ci ratio: 1.384619e-01	ci left: 5.964264e-04	ci right 6.859137e-04	k: 800	n:1250000
CTNNB1   1250000 perm   911 sec   (1372 perm/sec)   p_kst 6.400000e-04   p_cons 2.396216e-01   p_joint 7.792000e-04

Joint ci ratio: 1.282187e-01	ci left: 6.937346e-04	ci right 7.895368e-04	k: 933	n:1260000
Cons ci ratio: 6.219838e-03	ci left: 2.389374e-01	ci right 2.404289e-01	k: 302000	n:1260000
KS ci ratio: 1.378608e-01	ci left: 5.970564e-04	ci right 6.862174e-04	k: 807	n:1260000
CTNNB1   1260000 perm   923 sec   (1365 perm/sec)   p_kst 6.404762e-04   p_cons 2.396825e-01   p_joint 7.404762e-04

Joint ci ratio: 1.334704e-01	ci left: 6.334328e-04	ci right 7.247747e-04	k: 861	n:1270000
Cons ci ratio: 6.194390e-03	ci left: 2.389939e-01	ci right 2.404797e-01	k: 304465	n:1270000
KS ci ratio: 1.371833e-01	ci left: 5.984376e-04	ci right 6.873299e-04	k: 815	n:1270000
CTNNB1   1270000 perm   935 sec   (1358 perm/sec)   p_kst 6.417323e-04   p_cons 2.397362e-01   p_joint 6.779528e-04

Joint ci ratio: 1.330083e-01	ci left: 6.330154e-04	ci right 7.239561e-04	k: 867	n:1280000
Cons ci ratio: 6.169344e-03	ci left: 2.390442e-01	ci right 2.405242e-01	k: 306923	n:1280000
KS ci ratio: 1.366817e-01	ci left: 5.982893e-04	ci right 6.868081e-04	k: 821	n:1280000
CTNNB1   1280000 perm   947 sec   (1352 perm/sec)   p_kst 6.414063e-04   p_cons 2.397836e-01   p_joint 6.773437e-04

Joint ci ratio: 1.324752e-01	ci left: 6.333545e-04	ci right 7.239505e-04	k: 874	n:1290000
Cons ci ratio: 6.145344e-03	ci left: 2.390495e-01	ci right 2.405238e-01	k: 309324	n:1290000
KS ci ratio: 1.361034e-01	ci left: 5.988926e-04	ci right 6.870954e-04	k: 828	n:1290000
CTNNB1   1290000 perm   959 sec   (1345 perm/sec)   p_kst 6.418605e-04   p_cons 2.397860e-01   p_joint 6.775194e-04

Joint ci ratio: 1.315758e-01	ci left: 6.374085e-04	ci right 7.279170e-04	k: 886	n:1300000
Cons ci ratio: 6.122888e-03	ci left: 2.389794e-01	ci right 2.404479e-01	k: 311627	n:1300000
KS ci ratio: 1.351286e-01	ci left: 6.032034e-04	ci right 6.913537e-04	k: 840	n:1300000
CTNNB1   1300000 perm   971 sec   (1339 perm/sec)   p_kst 6.461538e-04   p_cons 2.397131e-01   p_joint 6.815385e-04

Joint ci ratio: 1.313540e-01	ci left: 6.347575e-04	ci right 7.247258e-04	k: 889	n:1310000
Cons ci ratio: 6.098466e-03	ci left: 2.390424e-01	ci right 2.405054e-01	k: 314103	n:1310000
KS ci ratio: 1.348884e-01	ci left: 6.008115e-04	ci right 6.884436e-04	k: 843	n:1310000
CTNNB1   1310000 perm   983 sec   (1332 perm/sec)   p_kst 6.435115e-04   p_cons 2.397733e-01   p_joint 6.786260e-04

Joint ci ratio: 1.307675e-01	ci left: 6.358106e-04	ci right 7.254946e-04	k: 897	n:1320000
Cons ci ratio: 6.076215e-03	ci left: 2.389916e-01	ci right 2.404489e-01	k: 316430	n:1320000
KS ci ratio: 1.342536e-01	ci left: 6.021164e-04	ci right 6.894926e-04	k: 851	n:1320000
CTNNB1   1320000 perm   997 sec   (1324 perm/sec)   p_kst 6.446970e-04   p_cons 2.397197e-01   p_joint 6.795455e-04

Joint ci ratio: 1.263401e-01	ci left: 6.776043e-04	ci right 7.697052e-04	k: 961	n:1330000
Cons ci ratio: 6.054056e-03	ci left: 2.389506e-01	ci right 2.404024e-01	k: 318769	n:1330000
KS ci ratio: 1.331636e-01	ci left: 6.077636e-04	ci right 6.951865e-04	k: 865	n:1330000
CTNNB1   1330000 perm   1009 sec   (1318 perm/sec)   p_kst 6.503759e-04   p_cons 2.396759e-01   p_joint 7.225564e-04

Joint ci ratio: 1.291942e-01	ci left: 6.422051e-04	ci right 7.316176e-04	k: 919	n:1340000
Cons ci ratio: 6.031668e-03	ci left: 2.389386e-01	ci right 2.403849e-01	k: 321146	n:1340000
KS ci ratio: 1.325527e-01	ci left: 6.089998e-04	ci right 6.961670e-04	k: 873	n:1340000
CTNNB1   1340000 perm   1022 sec   (1311 perm/sec)   p_kst 6.514925e-04   p_cons 2.396612e-01   p_joint 6.858209e-04

Joint ci ratio: 1.287054e-01	ci left: 6.424660e-04	ci right 7.315506e-04	k: 926	n:1350000
Cons ci ratio: 6.008550e-03	ci left: 2.389860e-01	ci right 2.404270e-01	k: 323603	n:1350000
KS ci ratio: 1.320250e-01	ci left: 6.095023e-04	ci right 6.963669e-04	k: 880	n:1350000
CTNNB1   1350000 perm   1034 sec   (1305 perm/sec)   p_kst 6.518519e-04   p_cons 2.397059e-01   p_joint 6.859259e-04

Joint ci ratio: 1.278801e-01	ci left: 6.462824e-04	ci right 7.352780e-04	k: 938	n:1360000
Cons ci ratio: 5.985671e-03	ci left: 2.390341e-01	ci right 2.404699e-01	k: 326062	n:1360000
KS ci ratio: 1.312082e-01	ci left: 6.128426e-04	ci right 6.996009e-04	k: 891	n:1360000
CTNNB1   1360000 perm   1047 sec   (1299 perm/sec)   p_kst 6.551471e-04   p_cons 2.397515e-01   p_joint 6.897059e-04

Joint ci ratio: 1.276088e-01	ci left: 6.443914e-04	ci right 7.329240e-04	k: 942	n:1370000
Cons ci ratio: 5.963338e-03	ci left: 2.390641e-01	ci right 2.404947e-01	k: 328497	n:1370000
KS ci ratio: 1.309151e-01	ci left: 6.111933e-04	ci right 6.975097e-04	k: 895	n:1370000
CTNNB1   1370000 perm   1060 sec   (1293 perm/sec)   p_kst 6.532847e-04   p_cons 2.397788e-01   p_joint 6.875912e-04

Joint ci ratio: 1.267379e-01	ci left: 6.488426e-04	ci right 7.373327e-04	k: 955	n:1380000
Cons ci ratio: 5.940910e-03	ci left: 2.391146e-01	ci right 2.405401e-01	k: 330961	n:1380000
KS ci ratio: 1.301186e-01	ci left: 6.144752e-04	ci right 7.006863e-04	k: 906	n:1380000
CTNNB1   1380000 perm   1073 sec   (1286 perm/sec)   p_kst 6.565217e-04   p_cons 2.398268e-01   p_joint 6.920290e-04

Joint ci ratio: 1.260801e-01	ci left: 6.511414e-04	ci right 7.394497e-04	k: 965	n:1390000
Cons ci ratio: 5.919668e-03	ci left: 2.391069e-01	ci right 2.405273e-01	k: 333345	n:1390000
KS ci ratio: 1.294071e-01	ci left: 6.170152e-04	ci right 7.030730e-04	k: 916	n:1390000
CTNNB1   1390000 perm   1085 sec   (1281 perm/sec)   p_kst 6.589928e-04   p_cons 2.398165e-01   p_joint 6.942446e-04

Joint ci ratio: 1.253681e-01	ci left: 6.541005e-04	ci right 7.422719e-04	k: 976	n:1400000
Cons ci ratio: 5.899242e-03	ci left: 2.390630e-01	ci right 2.404781e-01	k: 335678	n:1400000
KS ci ratio: 1.286376e-01	ci left: 6.202116e-04	ci right 7.061616e-04	k: 927	n:1400000
CTNNB1   1400000 perm   1098 sec   (1275 perm/sec)   p_kst 6.621429e-04   p_cons 2.397700e-01   p_joint 6.971429e-04

Joint ci ratio: 1.165146e-01	ci left: 7.553839e-04	ci right 8.495230e-04	k: 1130	n:1410000
Cons ci ratio: 5.879495e-03	ci left: 2.389906e-01	ci right 2.404006e-01	k: 337970	n:1410000
KS ci ratio: 1.280182e-01	ci left: 6.219910e-04	ci right 7.077411e-04	k: 936	n:1410000
CTNNB1   1410000 perm   1111 sec   (1269 perm/sec)   p_kst 6.638298e-04   p_cons 2.396950e-01   p_joint 8.014184e-04

Joint ci ratio: 1.208715e-01	ci left: 6.953970e-04	ci right 7.855327e-04	k: 1050	n:1420000
Cons ci ratio: 5.858699e-03	ci left: 2.389966e-01	ci right 2.404016e-01	k: 340372	n:1420000
KS ci ratio: 1.272731e-01	ci left: 6.251100e-04	ci right 7.107506e-04	k: 947	n:1420000
CTNNB1   1420000 perm   1124 sec   (1263 perm/sec)   p_kst 6.669014e-04   p_cons 2.396986e-01   p_joint 7.394366e-04

Joint ci ratio: 1.205280e-01	ci left: 6.946032e-04	ci right 7.843619e-04	k: 1056	n:1430000
Cons ci ratio: 5.838446e-03	ci left: 2.389823e-01	ci right 2.403824e-01	k: 342745	n:1430000
KS ci ratio: 1.269389e-01	ci left: 6.241239e-04	ci right 7.093880e-04	k: 952	n:1430000
CTNNB1   1430000 perm   1137 sec   (1257 perm/sec)   p_kst 6.657343e-04   p_cons 2.396818e-01   p_joint 7.384615e-04

Joint ci ratio: 1.203575e-01	ci left: 6.918000e-04	ci right 7.810611e-04	k: 1059	n:1440000
Cons ci ratio: 5.818081e-03	ci left: 2.389884e-01	ci right 2.403835e-01	k: 345147	n:1440000
KS ci ratio: 1.267397e-01	ci left: 6.218069e-04	ci right 7.066111e-04	k: 955	n:1440000
CTNNB1   1440000 perm   1151 sec   (1252 perm/sec)   p_kst 6.631944e-04   p_cons 2.396854e-01   p_joint 7.354167e-04

Joint ci ratio: 1.197377e-01	ci left: 6.943875e-04	ci right 7.834883e-04	k: 1070	n:1450000
Cons ci ratio: 5.798136e-03	ci left: 2.389812e-01	ci right 2.403716e-01	k: 347530	n:1450000
KS ci ratio: 1.261472e-01	ci left: 6.235292e-04	ci right 7.081410e-04	k: 964	n:1450000
CTNNB1   1450000 perm   1164 sec   (1246 perm/sec)   p_kst 6.648276e-04   p_cons 2.396759e-01   p_joint 7.379310e-04

Joint ci ratio: 1.194592e-01	ci left: 6.929536e-04	ci right 7.816490e-04	k: 1075	n:1460000
Cons ci ratio: 5.777798e-03	ci left: 2.390118e-01	ci right 2.403974e-01	k: 349968	n:1460000
KS ci ratio: 1.258218e-01	ci left: 6.225752e-04	ci right 7.068233e-04	k: 969	n:1460000
CTNNB1   1460000 perm   1177 sec   (1240 perm/sec)   p_kst 6.636986e-04   p_cons 2.397041e-01   p_joint 7.363014e-04

Joint ci ratio: 1.190176e-01	ci left: 6.935195e-04	ci right 7.819361e-04	k: 1083	n:1470000
Cons ci ratio: 5.758263e-03	ci left: 2.390046e-01	ci right 2.403855e-01	k: 352351	n:1470000
KS ci ratio: 1.253060e-01	ci left: 6.236112e-04	ci right 7.076280e-04	k: 977	n:1470000
CTNNB1   1470000 perm   1191 sec   (1235 perm/sec)   p_kst 6.646259e-04   p_cons 2.396946e-01   p_joint 7.367347e-04

Joint ci ratio: 1.188534e-01	ci left: 6.908002e-04	ci right 7.787401e-04	k: 1086	n:1480000
Cons ci ratio: 5.739202e-03	ci left: 2.389800e-01	ci right 2.403562e-01	k: 354708	n:1480000
KS ci ratio: 1.251144e-01	ci left: 6.213611e-04	ci right 7.049373e-04	k: 980	n:1480000
CTNNB1   1480000 perm   1204 sec   (1229 perm/sec)   p_kst 6.621622e-04   p_cons 2.396676e-01   p_joint 7.337838e-04

Joint ci ratio: 1.184184e-01	ci left: 6.913738e-04	ci right 7.790420e-04	k: 1094	n:1490000
Cons ci ratio: 5.719517e-03	ci left: 2.390073e-01	ci right 2.403789e-01	k: 357142	n:1490000
KS ci ratio: 1.246073e-01	ci left: 6.223924e-04	ci right 7.057429e-04	k: 988	n:1490000
CTNNB1   1490000 perm   1218 sec   (1223 perm/sec)   p_kst 6.630872e-04   p_cons 2.396926e-01   p_joint 7.342282e-04

Joint ci ratio: 1.180954e-01	ci left: 6.906463e-04	ci right 7.779667e-04	k: 1100	n:1500000
Cons ci ratio: 5.700565e-03	ci left: 2.390003e-01	ci right 2.403673e-01	k: 359525	n:1500000
KS ci ratio: 1.242311e-01	ci left: 6.221186e-04	ci right 7.051623e-04	k: 994	n:1500000
CTNNB1   1500000 perm   1232 sec   (1218 perm/sec)   p_kst 6.626667e-04   p_cons 2.396833e-01   p_joint 7.333333e-04

Joint ci ratio: 1.176156e-01	ci left: 6.918570e-04	ci right 7.789505e-04	k: 1109	n:1510000
Cons ci ratio: 5.682193e-03	ci left: 2.389683e-01	ci right 2.403307e-01	k: 361870	n:1510000
KS ci ratio: 1.237346e-01	ci left: 6.231323e-04	ci right 7.059546e-04	k: 1002	n:1510000
CTNNB1   1510000 perm   1245 sec   (1212 perm/sec)   p_kst 6.635762e-04   p_cons 2.396490e-01   p_joint 7.344371e-04

Joint ci ratio: 1.174043e-01	ci left: 6.898595e-04	ci right 7.765347e-04	k: 1113	n:1520000
Cons ci ratio: 5.663926e-03	ci left: 2.389413e-01	ci right 2.402991e-01	k: 364222	n:1520000
KS ci ratio: 1.234887e-01	ci left: 6.215829e-04	ci right 7.040231e-04	k: 1006	n:1520000
CTNNB1   1520000 perm   1259 sec   (1207 perm/sec)   p_kst 6.618421e-04   p_cons 2.396197e-01   p_joint 7.322368e-04

Joint ci ratio: 1.118638e-01	ci left: 7.570918e-04	ci right 8.474294e-04	k: 1226	n:1530000
Cons ci ratio: 5.645277e-03	ci left: 2.389506e-01	ci right 2.403040e-01	k: 366629	n:1530000
KS ci ratio: 1.228800e-01	ci left: 6.238549e-04	ci right 7.061589e-04	k: 1016	n:1530000
CTNNB1   1530000 perm   1273 sec   (1201 perm/sec)   p_kst 6.640523e-04   p_cons 2.396268e-01   p_joint 8.013072e-04

Joint ci ratio: 1.116820e-01	ci left: 7.547004e-04	ci right 8.445967e-04	k: 1230	n:1540000
Cons ci ratio: 5.627332e-03	ci left: 2.389260e-01	ci right 2.402750e-01	k: 368984	n:1540000
KS ci ratio: 1.226391e-01	ci left: 6.223215e-04	ci right 7.042506e-04	k: 1020	n:1540000
CTNNB1   1540000 perm   1287 sec   (1196 perm/sec)   p_kst 6.623377e-04   p_cons 2.396000e-01   p_joint 7.987013e-04

Joint ci ratio: 1.165188e-01	ci left: 6.871542e-04	ci right 7.727936e-04	k: 1130	n:1550000
Cons ci ratio: 5.609339e-03	ci left: 2.389160e-01	ci right 2.402605e-01	k: 371361	n:1550000
KS ci ratio: 1.224595e-01	ci left: 6.201826e-04	ci right 7.017019e-04	k: 1023	n:1550000
CTNNB1   1550000 perm   1302 sec   (1191 perm/sec)   p_kst 6.600000e-04   p_cons 2.395877e-01   p_joint 7.290323e-04

Joint ci ratio: 1.162110e-01	ci left: 6.864836e-04	ci right 7.717978e-04	k: 1136	n:1560000
Cons ci ratio: 5.591556e-03	ci left: 2.389035e-01	ci right 2.402437e-01	k: 373734	n:1560000
KS ci ratio: 1.222211e-01	ci left: 6.186927e-04	ci right 6.998463e-04	k: 1027	n:1560000
CTNNB1   1560000 perm   1316 sec   (1186 perm/sec)   p_kst 6.583333e-04   p_cons 2.395731e-01   p_joint 7.282051e-04

Joint ci ratio: 1.159057e-01	ci left: 6.858218e-04	ci right 7.708145e-04	k: 1142	n:1570000
Cons ci ratio: 5.573698e-03	ci left: 2.389070e-01	ci right 2.402430e-01	k: 376132	n:1570000
KS ci ratio: 1.219250e-01	ci left: 6.178394e-04	ci right 6.986706e-04	k: 1032	n:1570000
CTNNB1   1570000 perm   1330 sec   (1181 perm/sec)   p_kst 6.573248e-04   p_cons 2.395745e-01   p_joint 7.273885e-04

Joint ci ratio: 1.152020e-01	ci left: 6.900859e-04	ci right 7.750526e-04	k: 1156	n:1580000
Cons ci ratio: 5.555663e-03	ci left: 2.389333e-01	ci right 2.402651e-01	k: 378566	n:1580000
KS ci ratio: 1.211068e-01	ci left: 6.225206e-04	ci right 7.033785e-04	k: 1046	n:1580000
CTNNB1   1580000 perm   1344 sec   (1176 perm/sec)   p_kst 6.620253e-04   p_cons 2.395987e-01   p_joint 7.316456e-04

Joint ci ratio: 1.146091e-01	ci left: 6.930760e-04	ci right 7.779419e-04	k: 1168	n:1590000
Cons ci ratio: 5.537840e-03	ci left: 2.389568e-01	ci right 2.402844e-01	k: 380996	n:1590000
KS ci ratio: 1.204185e-01	ci left: 6.259246e-04	ci right 7.067297e-04	k: 1058	n:1590000
CTNNB1   1590000 perm   1358 sec   (1171 perm/sec)   p_kst 6.654088e-04   p_cons 2.396201e-01   p_joint 7.345912e-04

Joint ci ratio: 1.142189e-01	ci left: 6.936012e-04	ci right 7.782228e-04	k: 1176	n:1600000
Cons ci ratio: 5.520613e-03	ci left: 2.389519e-01	ci right 2.402753e-01	k: 383381	n:1600000
KS ci ratio: 1.199662e-01	ci left: 6.268623e-04	ci right 7.074629e-04	k: 1066	n:1600000
CTNNB1   1600000 perm   1373 sec   (1166 perm/sec)   p_kst 6.662500e-04   p_cons 2.396131e-01   p_joint 7.350000e-04

Joint ci ratio: 1.138327e-01	ci left: 6.941204e-04	ci right 7.784997e-04	k: 1184	n:1610000
Cons ci ratio: 5.503790e-03	ci left: 2.389309e-01	ci right 2.402502e-01	k: 385740	n:1610000
KS ci ratio: 1.195746e-01	ci left: 6.271863e-04	ci right 7.075467e-04	k: 1073	n:1610000
CTNNB1   1610000 perm   1387 sec   (1161 perm/sec)   p_kst 6.664596e-04   p_cons 2.395901e-01   p_joint 7.354037e-04

Joint ci ratio: 1.133553e-01	ci left: 6.958332e-04	ci right 7.800423e-04	k: 1194	n:1620000
Cons ci ratio: 5.486841e-03	ci left: 2.389287e-01	ci right 2.402438e-01	k: 388129	n:1620000
KS ci ratio: 1.191317e-01	ci left: 6.281056e-04	ci right 7.082648e-04	k: 1081	n:1620000
CTNNB1   1620000 perm   1402 sec   (1156 perm/sec)   p_kst 6.672840e-04   p_cons 2.395858e-01   p_joint 7.370370e-04

Joint ci ratio: 1.129308e-01	ci left: 6.969295e-04	ci right 7.809344e-04	k: 1203	n:1630000
Cons ci ratio: 5.470351e-03	ci left: 2.389063e-01	ci right 2.402174e-01	k: 390485	n:1630000
KS ci ratio: 1.186392e-01	ci left: 6.296095e-04	ci right 7.096052e-04	k: 1090	n:1630000
CTNNB1   1630000 perm   1417 sec   (1151 perm/sec)   p_kst 6.687117e-04   p_cons 2.395613e-01   p_joint 7.380368e-04

Joint ci ratio: 1.126971e-01	ci left: 6.956427e-04	ci right 7.793074e-04	k: 1208	n:1640000
Cons ci ratio: 5.453882e-03	ci left: 2.388927e-01	ci right 2.401997e-01	k: 392855	n:1640000
KS ci ratio: 1.183683e-01	ci left: 6.287289e-04	ci right 7.084174e-04	k: 1095	n:1640000
CTNNB1   1640000 perm   1436 sec   (1142 perm/sec)   p_kst 6.676829e-04   p_cons 2.395457e-01   p_joint 7.365854e-04

Joint ci ratio: 1.124648e-01	ci left: 6.943716e-04	ci right 7.776999e-04	k: 1213	n:1650000
Cons ci ratio: 5.437135e-03	ci left: 2.389077e-01	ci right 2.402108e-01	k: 395272	n:1650000
KS ci ratio: 1.180993e-01	ci left: 6.278590e-04	ci right 7.072439e-04	k: 1100	n:1650000
CTNNB1   1650000 perm   1453 sec   (1136 perm/sec)   p_kst 6.666667e-04   p_cons 2.395588e-01   p_joint 7.351515e-04

Joint ci ratio: 1.119129e-01	ci left: 6.972148e-04	ci right 7.804466e-04	k: 1225	n:1660000
Cons ci ratio: 5.420738e-03	ci left: 2.389093e-01	ci right 2.402085e-01	k: 397667	n:1660000
KS ci ratio: 1.175136e-01	ci left: 6.305081e-04	ci right 7.098050e-04	k: 1111	n:1660000
CTNNB1   1660000 perm   1468 sec   (1131 perm/sec)   p_kst 6.692771e-04   p_cons 2.395584e-01   p_joint 7.379518e-04

Joint ci ratio: 1.114592e-01	ci left: 6.988606e-04	ci right 7.819285e-04	k: 1235	n:1670000
Cons ci ratio: 5.404703e-03	ci left: 2.388965e-01	ci right 2.401918e-01	k: 400038	n:1670000
KS ci ratio: 1.170408e-01	ci left: 6.319637e-04	ci right 7.111019e-04	k: 1120	n:1670000
CTNNB1   1670000 perm   1483 sec   (1126 perm/sec)   p_kst 6.706587e-04   p_cons 2.395437e-01   p_joint 7.395210e-04

Joint ci ratio: 1.110556e-01	ci left: 6.999088e-04	ci right 7.827803e-04	k: 1244	n:1680000
Cons ci ratio: 5.388562e-03	ci left: 2.389006e-01	ci right 2.401920e-01	k: 402437	n:1680000
KS ci ratio: 1.165737e-01	ci left: 6.334027e-04	ci right 7.123827e-04	k: 1129	n:1680000
CTNNB1   1680000 perm   1498 sec   (1122 perm/sec)   p_kst 6.720238e-04   p_cons 2.395458e-01   p_joint 7.404762e-04

Joint ci ratio: 1.106563e-01	ci left: 7.009451e-04	ci right 7.836215e-04	k: 1253	n:1690000
Cons ci ratio: 5.372617e-03	ci left: 2.389011e-01	ci right 2.401886e-01	k: 404830	n:1690000
KS ci ratio: 1.161632e-01	ci left: 6.342507e-04	ci right 7.130388e-04	k: 1137	n:1690000
CTNNB1   1690000 perm   1513 sec   (1117 perm/sec)   p_kst 6.727811e-04   p_cons 2.395444e-01   p_joint 7.414201e-04

Joint ci ratio: 1.103050e-01	ci left: 7.013978e-04	ci right 7.838478e-04	k: 1261	n:1700000
Cons ci ratio: 5.356467e-03	ci left: 2.389250e-01	ci right 2.402088e-01	k: 407263	n:1700000
KS ci ratio: 1.157570e-01	ci left: 6.350892e-04	ci right 7.136868e-04	k: 1145	n:1700000
CTNNB1   1700000 perm   1528 sec   (1112 perm/sec)   p_kst 6.735294e-04   p_cons 2.395665e-01   p_joint 7.417647e-04

Joint ci ratio: 1.098272e-01	ci left: 7.035518e-04	ci right 7.858736e-04	k: 1272	n:1710000
Cons ci ratio: 5.340805e-03	ci left: 2.389253e-01	ci right 2.402054e-01	k: 409656	n:1710000
KS ci ratio: 1.152551e-01	ci left: 6.370543e-04	ci right 7.155300e-04	k: 1155	n:1710000
CTNNB1   1710000 perm   1544 sec   (1108 perm/sec)   p_kst 6.754386e-04   p_cons 2.395649e-01   p_joint 7.438596e-04

Joint ci ratio: 1.093557e-01	ci left: 7.056814e-04	ci right 7.878751e-04	k: 1283	n:1720000
Cons ci ratio: 5.325365e-03	ci left: 2.389199e-01	ci right 2.401961e-01	k: 412039	n:1720000
KS ci ratio: 1.147597e-01	ci left: 6.389972e-04	ci right 7.173510e-04	k: 1165	n:1720000
CTNNB1   1720000 perm   1559 sec   (1103 perm/sec)   p_kst 6.773256e-04   p_cons 2.395576e-01   p_joint 7.459302e-04

Joint ci ratio: 1.089744e-01	ci left: 7.066626e-04	ci right 7.886652e-04	k: 1292	n:1730000
Cons ci ratio: 5.309425e-03	ci left: 2.389577e-01	ci right 2.402304e-01	k: 414497	n:1730000
KS ci ratio: 1.143193e-01	ci left: 6.403569e-04	ci right 7.185557e-04	k: 1174	n:1730000
CTNNB1   1730000 perm   1574 sec   (1099 perm/sec)   p_kst 6.786127e-04   p_cons 2.395936e-01   p_joint 7.468208e-04

Joint ci ratio: 1.087643e-01	ci left: 7.053966e-04	ci right 7.870844e-04	k: 1297	n:1740000
Cons ci ratio: 5.294363e-03	ci left: 2.389447e-01	ci right 2.402137e-01	k: 416867	n:1740000
KS ci ratio: 1.140769e-01	ci left: 6.394681e-04	ci right 7.173817e-04	k: 1179	n:1740000
CTNNB1   1740000 perm   1590 sec   (1094 perm/sec)   p_kst 6.775862e-04   p_cons 2.395787e-01   p_joint 7.454023e-04

Joint ci ratio: 1.083892e-01	ci left: 7.063690e-04	ci right 7.878692e-04	k: 1306	n:1750000
Cons ci ratio: 5.278749e-03	ci left: 2.389786e-01	ci right 2.402440e-01	k: 419319	n:1750000
KS ci ratio: 1.136921e-01	ci left: 6.402553e-04	ci right 7.179840e-04	k: 1187	n:1750000
CTNNB1   1750000 perm   1606 sec   (1090 perm/sec)   p_kst 6.782857e-04   p_cons 2.396109e-01   p_joint 7.462857e-04

Joint ci ratio: 1.082238e-01	ci left: 7.045667e-04	ci right 7.857270e-04	k: 1310	n:1760000
Cons ci ratio: 5.263954e-03	ci left: 2.389650e-01	ci right 2.402268e-01	k: 421688	n:1760000
KS ci ratio: 1.135013e-01	ci left: 6.388256e-04	ci right 7.162418e-04	k: 1191	n:1760000
CTNNB1   1760000 perm   1622 sec   (1085 perm/sec)   p_kst 6.767045e-04   p_cons 2.395955e-01   p_joint 7.443182e-04

Joint ci ratio: 1.077725e-01	ci left: 7.066329e-04	ci right 7.876703e-04	k: 1321	n:1770000
Cons ci ratio: 5.249128e-03	ci left: 2.389623e-01	ci right 2.402205e-01	k: 424076	n:1770000
KS ci ratio: 1.130280e-01	ci left: 6.407061e-04	ci right 7.180049e-04	k: 1201	n:1770000
CTNNB1   1770000 perm   1638 sec   (1081 perm/sec)   p_kst 6.785311e-04   p_cons 2.395910e-01   p_joint 7.463277e-04

Joint ci ratio: 1.072865e-01	ci left: 7.092234e-04	ci right 7.901680e-04	k: 1333	n:1780000
Cons ci ratio: 5.234491e-03	ci left: 2.389551e-01	ci right 2.402098e-01	k: 426456	n:1780000
KS ci ratio: 1.124679e-01	ci left: 6.436581e-04	ci right 7.209027e-04	k: 1213	n:1780000
CTNNB1   1780000 perm   1653 sec   (1077 perm/sec)   p_kst 6.814607e-04   p_cons 2.395820e-01   p_joint 7.488764e-04

Joint ci ratio: 1.070062e-01	ci left: 7.090671e-04	ci right 7.897690e-04	k: 1340	n:1790000
Cons ci ratio: 5.220175e-03	ci left: 2.389341e-01	ci right 2.401852e-01	k: 428811	n:1790000
KS ci ratio: 1.121450e-01	ci left: 6.438630e-04	ci right 7.208958e-04	k: 1220	n:1790000
CTNNB1   1790000 perm   1669 sec   (1072 perm/sec)   p_kst 6.815642e-04   p_cons 2.395592e-01   p_joint 7.486034e-04

Joint ci ratio: 1.066093e-01	ci left: 7.105350e-04	ci right 7.910853e-04	k: 1350	n:1800000
Cons ci ratio: 5.205644e-03	ci left: 2.389366e-01	ci right 2.401842e-01	k: 431208	n:1800000
KS ci ratio: 1.117339e-01	ci left: 6.451461e-04	ci right 7.220307e-04	k: 1229	n:1800000
CTNNB1   1800000 perm   1685 sec   (1068 perm/sec)   p_kst 6.827778e-04   p_cons 2.395600e-01   p_joint 7.500000e-04

Joint ci ratio: 1.062169e-01	ci left: 7.119872e-04	ci right 7.923865e-04	k: 1360	n:1810000
Cons ci ratio: 5.191004e-03	ci left: 2.389551e-01	ci right 2.401993e-01	k: 433634	n:1810000
KS ci ratio: 1.113273e-01	ci left: 6.464154e-04	ci right 7.231526e-04	k: 1238	n:1810000
CTNNB1   1810000 perm   1700 sec   (1064 perm/sec)   p_kst 6.839779e-04   p_cons 2.395768e-01   p_joint 7.513812e-04

Joint ci ratio: 1.059836e-01	ci left: 7.112844e-04	ci right 7.914169e-04	k: 1366	n:1820000
Cons ci ratio: 5.176238e-03	ci left: 2.389910e-01	ci right 2.402318e-01	k: 436092	n:1820000
KS ci ratio: 1.111034e-01	ci left: 6.455345e-04	ci right 7.220029e-04	k: 1243	n:1820000
CTNNB1   1820000 perm   1717 sec   (1060 perm/sec)   p_kst 6.829670e-04   p_cons 2.396110e-01   p_joint 7.505495e-04

Joint ci ratio: 1.057133e-01	ci left: 7.111215e-04	ci right 7.910185e-04	k: 1373	n:1830000
Cons ci ratio: 5.162053e-03	ci left: 2.389943e-01	ci right 2.402317e-01	k: 438491	n:1830000
KS ci ratio: 1.107921e-01	ci left: 6.457260e-04	ci right 7.219887e-04	k: 1250	n:1830000
CTNNB1   1830000 perm   1733 sec   (1056 perm/sec)   p_kst 6.830601e-04   p_cons 2.396126e-01   p_joint 7.502732e-04

Joint ci ratio: 1.055598e-01	ci left: 7.093732e-04	ci right 7.889509e-04	k: 1377	n:1840000
Cons ci ratio: 5.147739e-03	ci left: 2.390149e-01	ci right 2.402490e-01	k: 440922	n:1840000
KS ci ratio: 1.106596e-01	ci left: 6.438018e-04	ci right 7.197405e-04	k: 1253	n:1840000
CTNNB1   1840000 perm   1749 sec   (1052 perm/sec)   p_kst 6.809783e-04   p_cons 2.396315e-01   p_joint 7.483696e-04

Joint ci ratio: 1.054070e-01	ci left: 7.076438e-04	ci right 7.869055e-04	k: 1381	n:1850000
Cons ci ratio: 5.134389e-03	ci left: 2.389753e-01	ci right 2.402060e-01	k: 443242	n:1850000
KS ci ratio: 1.104836e-01	ci left: 6.424242e-04	ci right 7.180720e-04	k: 1257	n:1850000
CTNNB1   1850000 perm   1772 sec   (1044 perm/sec)   p_kst 6.794595e-04   p_cons 2.395903e-01   p_joint 7.464865e-04

Joint ci ratio: 1.050655e-01	ci left: 7.085506e-04	ci right 7.876408e-04	k: 1390	n:1860000
Cons ci ratio: 5.120507e-03	ci left: 2.389813e-01	ci right 2.402087e-01	k: 445646	n:1860000
KS ci ratio: 1.101340e-01	ci left: 6.431527e-04	ci right 7.186311e-04	k: 1265	n:1860000
CTNNB1   1860000 perm   1789 sec   (1040 perm/sec)   p_kst 6.801075e-04   p_cons 2.395946e-01   p_joint 7.473118e-04

Joint ci ratio: 1.048396e-01	ci left: 7.078859e-04	ci right 7.867216e-04	k: 1396	n:1870000
Cons ci ratio: 5.106677e-03	ci left: 2.389916e-01	ci right 2.402157e-01	k: 448058	n:1870000
KS ci ratio: 1.098739e-01	ci left: 6.428336e-04	ci right 7.180849e-04	k: 1271	n:1870000
CTNNB1   1870000 perm   1807 sec   (1035 perm/sec)   p_kst 6.796791e-04   p_cons 2.396032e-01   p_joint 7.465241e-04

Joint ci ratio: 1.046153e-01	ci left: 7.072284e-04	ci right 7.858120e-04	k: 1402	n:1880000
Cons ci ratio: 5.093279e-03	ci left: 2.389788e-01	ci right 2.401996e-01	k: 450427	n:1880000
KS ci ratio: 1.096157e-01	ci left: 6.425182e-04	ci right 7.175444e-04	k: 1277	n:1880000
CTNNB1   1880000 perm   1824 sec   (1031 perm/sec)   p_kst 6.792553e-04   p_cons 2.395888e-01   p_joint 7.457447e-04

Joint ci ratio: 1.044294e-01	ci left: 7.060628e-04	ci right 7.843689e-04	k: 1407	n:1890000
Cons ci ratio: 5.079513e-03	ci left: 2.390001e-01	ci right 2.402177e-01	k: 452860	n:1890000
KS ci ratio: 1.094020e-01	ci left: 6.416917e-04	ci right 7.164658e-04	k: 1282	n:1890000
CTNNB1   1890000 perm   1841 sec   (1027 perm/sec)   p_kst 6.783069e-04   p_cons 2.396085e-01   p_joint 7.444444e-04

Joint ci ratio: 1.043185e-01	ci left: 7.038844e-04	ci right 7.818609e-04	k: 1410	n:1900000
Cons ci ratio: 5.066451e-03	ci left: 2.389785e-01	ci right 2.401928e-01	k: 455212	n:1900000
KS ci ratio: 1.092744e-01	ci left: 6.398501e-04	ci right 7.143171e-04	k: 1285	n:1900000
CTNNB1   1900000 perm   1858 sec   (1023 perm/sec)   p_kst 6.763158e-04   p_cons 2.395853e-01   p_joint 7.421053e-04

Joint ci ratio: 1.040607e-01	ci left: 7.037685e-04	ci right 7.815278e-04	k: 1417	n:1910000
Cons ci ratio: 5.053699e-03	ci left: 2.389420e-01	ci right 2.401531e-01	k: 457535	n:1910000
KS ci ratio: 1.090204e-01	ci left: 6.395557e-04	ci right 7.138043e-04	k: 1291	n:1910000
CTNNB1   1910000 perm   1875 sec   (1019 perm/sec)   p_kst 6.759162e-04   p_cons 2.395471e-01   p_joint 7.418848e-04

Joint ci ratio: 1.037683e-01	ci left: 7.041615e-04	ci right 7.817322e-04	k: 1425	n:1920000
Cons ci ratio: 5.040561e-03	ci left: 2.389407e-01	ci right 2.401486e-01	k: 459925	n:1920000
KS ci ratio: 1.086844e-01	ci left: 6.402779e-04	ci right 7.143666e-04	k: 1299	n:1920000
CTNNB1   1920000 perm   1892 sec   (1015 perm/sec)   p_kst 6.765625e-04   p_cons 2.395443e-01   p_joint 7.421875e-04

Joint ci ratio: 1.034063e-01	ci left: 7.055601e-04	ci right 7.829973e-04	k: 1435	n:1930000
Cons ci ratio: 5.027317e-03	ci left: 2.389545e-01	ci right 2.401593e-01	k: 462344	n:1930000
KS ci ratio: 1.083101e-01	ci left: 6.414971e-04	ci right 7.154549e-04	k: 1308	n:1930000
CTNNB1   1930000 perm   1911 sec   (1010 perm/sec)   p_kst 6.777202e-04   p_cons 2.395565e-01   p_joint 7.435233e-04

Joint ci ratio: 1.032986e-01	ci left: 7.034296e-04	ci right 7.805476e-04	k: 1438	n:1940000
Cons ci ratio: 5.014461e-03	ci left: 2.389475e-01	ci right 2.401492e-01	k: 464723	n:1940000
KS ci ratio: 1.082275e-01	ci left: 6.391934e-04	ci right 7.128259e-04	k: 1310	n:1940000
CTNNB1   1940000 perm   1928 sec   (1006 perm/sec)   p_kst 6.752577e-04   p_cons 2.395479e-01   p_joint 7.412371e-04

Joint ci ratio: 1.030126e-01	ci left: 7.038190e-04	ci right 7.807532e-04	k: 1446	n:1950000
Cons ci ratio: 5.001675e-03	ci left: 2.389426e-01	ci right 2.401412e-01	k: 467106	n:1950000
KS ci ratio: 1.079808e-01	ci left: 6.389092e-04	ci right 7.123305e-04	k: 1316	n:1950000
CTNNB1   1950000 perm   1946 sec   (1002 perm/sec)   p_kst 6.748718e-04   p_cons 2.395415e-01   p_joint 7.415385e-04

Joint ci ratio: 1.026584e-01	ci left: 7.051989e-04	ci right 7.820029e-04	k: 1456	n:1960000
Cons ci ratio: 4.988853e-03	ci left: 2.389475e-01	ci right 2.401431e-01	k: 469508	n:1960000
KS ci ratio: 1.076542e-01	ci left: 6.396210e-04	ci right 7.128878e-04	k: 1324	n:1960000
CTNNB1   1960000 perm   1964 sec   (998 perm/sec)   p_kst 6.755102e-04   p_cons 2.395449e-01   p_joint 7.428571e-04

Joint ci ratio: 1.023079e-01	ci left: 7.065653e-04	ci right 7.832395e-04	k: 1466	n:1970000
Cons ci ratio: 4.975852e-03	ci left: 2.389726e-01	ci right 2.401652e-01	k: 471950	n:1970000
KS ci ratio: 1.072904e-01	ci left: 6.408199e-04	ci right 7.139603e-04	k: 1333	n:1970000
CTNNB1   1970000 perm   1983 sec   (994 perm/sec)   p_kst 6.766497e-04   p_cons 2.395685e-01   p_joint 7.441624e-04

Joint ci ratio: 1.018919e-01	ci left: 7.089026e-04	ci right 7.854990e-04	k: 1478	n:1980000
Cons ci ratio: 4.962870e-03	ci left: 2.390036e-01	ci right 2.401931e-01	k: 474404	n:1980000
KS ci ratio: 1.068507e-01	ci left: 6.429903e-04	ci right 7.160587e-04	k: 1344	n:1980000
CTNNB1   1980000 perm   2001 sec   (989 perm/sec)   p_kst 6.787879e-04   p_cons 2.395980e-01   p_joint 7.464646e-04

Joint ci ratio: 1.014469e-01	ci left: 7.117069e-04	ci right 7.882505e-04	k: 1491	n:1990000
Cons ci ratio: 4.950507e-03	ci left: 2.389960e-01	ci right 2.401826e-01	k: 476782	n:1990000
KS ci ratio: 1.063378e-01	ci left: 6.461178e-04	ci right 7.191671e-04	k: 1357	n:1990000
CTNNB1   1990000 perm   2020 sec   (985 perm/sec)   p_kst 6.819095e-04   p_cons 2.395889e-01   p_joint 7.492462e-04

Joint ci ratio: 1.012097e-01	ci left: 7.115597e-04	ci right 7.878979e-04	k: 1498	n:2000000
Cons ci ratio: 4.937891e-03	ci left: 2.390141e-01	ci right 2.401977e-01	k: 479211	n:2000000
KS ci ratio: 1.061037e-01	ci left: 6.458075e-04	ci right 7.186509e-04	k: 1363	n:2000000
CTNNB1   2000000 perm   2038 sec   (981 perm/sec)   p_kst 6.815000e-04   p_cons 2.396055e-01   p_joint 7.490000e-04

Joint ci ratio: 1.010078e-01	ci left: 7.109292e-04	ci right 7.870385e-04	k: 1504	n:2010000
Cons ci ratio: 4.925418e-03	ci left: 2.390284e-01	ci right 2.402091e-01	k: 481633	n:2010000
KS ci ratio: 1.059098e-01	ci left: 6.450161e-04	ci right 7.176291e-04	k: 1368	n:2010000
CTNNB1   2010000 perm   2056 sec   (978 perm/sec)   p_kst 6.805970e-04   p_cons 2.396184e-01   p_joint 7.482587e-04

Joint ci ratio: 1.006406e-01	ci left: 7.127180e-04	ci right 7.887251e-04	k: 1515	n:2020000
Cons ci ratio: 4.913453e-03	ci left: 2.390120e-01	ci right 2.401897e-01	k: 483993	n:2020000
KS ci ratio: 1.054868e-01	ci left: 6.471246e-04	ci right 7.196658e-04	k: 1379	n:2020000
CTNNB1   2020000 perm   2074 sec   (974 perm/sec)   p_kst 6.826733e-04   p_cons 2.396005e-01   p_joint 7.500000e-04

Joint ci ratio: 1.004091e-01	ci left: 7.125686e-04	ci right 7.883747e-04	k: 1522	n:2030000
Cons ci ratio: 4.901237e-03	ci left: 2.390208e-01	ci right 2.401957e-01	k: 486404	n:2030000
KS ci ratio: 1.052202e-01	ci left: 6.472942e-04	ci right 7.196598e-04	k: 1386	n:2030000
CTNNB1   2030000 perm   2093 sec   (970 perm/sec)   p_kst 6.827586e-04   p_cons 2.396079e-01   p_joint 7.497537e-04

Joint ci ratio: 1.001137e-01	ci left: 7.133768e-04	ci right 7.890324e-04	k: 1531	n:2040000
Cons ci ratio: 4.889164e-03	ci left: 2.390257e-01	ci right 2.401976e-01	k: 488807	n:2040000
KS ci ratio: 1.049181e-01	ci left: 6.479397e-04	ci right 7.201566e-04	k: 1394	n:2040000
CTNNB1   2040000 perm   2111 sec   (966 perm/sec)   p_kst 6.833333e-04   p_cons 2.396113e-01   p_joint 7.504902e-04

Joint ci ratio: 9.978847e-02	ci left: 7.146531e-04	ci right 7.901834e-04	k: 1541	n:2050000
Cons ci ratio: 4.877121e-03	ci left: 2.390348e-01	ci right 2.402040e-01	k: 491219	n:2050000
KS ci ratio: 1.045440e-01	ci left: 6.495293e-04	ci right 7.216494e-04	k: 1404	n:2050000
CTNNB1   2050000 perm   2129 sec   (963 perm/sec)   p_kst 6.848780e-04   p_cons 2.396190e-01   p_joint 7.517073e-04

Joint ci ratio: 9.511874e-02	ci left: 7.845951e-04	ci right 8.634210e-04	k: 1696	n:2060000
Cons ci ratio: 4.865360e-03	ci left: 2.390294e-01	ci right 2.401956e-01	k: 493601	n:2060000
KS ci ratio: 1.040268e-01	ci left: 6.529952e-04	ci right 7.251195e-04	k: 1418	n:2060000
CTNNB1   2060000 perm   2149 sec   (959 perm/sec)   p_kst 6.883495e-04   p_cons 2.396121e-01   p_joint 8.233010e-04

Joint ci ratio: 9.481189e-02	ci left: 7.859926e-04	ci right 8.646900e-04	k: 1707	n:2070000
Cons ci ratio: 4.853769e-03	ci left: 2.390177e-01	ci right 2.401811e-01	k: 495970	n:2070000
KS ci ratio: 1.036984e-01	ci left: 6.540755e-04	ci right 7.260772e-04	k: 1427	n:2070000
CTNNB1   2070000 perm   2167 sec   (955 perm/sec)   p_kst 6.893720e-04   p_cons 2.395990e-01   p_joint 8.246377e-04

Joint ci ratio: 9.464584e-02	ci left: 7.850301e-04	ci right 8.634858e-04	k: 1713	n:2080000
Cons ci ratio: 4.841934e-03	ci left: 2.390306e-01	ci right 2.401913e-01	k: 498390	n:2080000
KS ci ratio: 1.035535e-01	ci left: 6.528041e-04	ci right 7.245594e-04	k: 1431	n:2080000
CTNNB1   2080000 perm   2186 sec   (952 perm/sec)   p_kst 6.879808e-04   p_cons 2.396106e-01   p_joint 8.235577e-04

Joint ci ratio: 9.442574e-02	ci left: 7.850112e-04	ci right 8.632725e-04	k: 1721	n:2090000
Cons ci ratio: 4.830470e-03	ci left: 2.390219e-01	ci right 2.401798e-01	k: 500765	n:2090000
KS ci ratio: 1.033014e-01	ci left: 6.529433e-04	ci right 7.245285e-04	k: 1438	n:2090000
CTNNB1   2090000 perm   2204 sec   (948 perm/sec)   p_kst 6.880383e-04   p_cons 2.396005e-01   p_joint 8.234450e-04

Joint ci ratio: 9.428902e-02	ci left: 7.835978e-04	ci right 8.615989e-04	k: 1726	n:2100000
Cons ci ratio: 4.819384e-03	ci left: 2.389909e-01	ci right 2.401460e-01	k: 503093	n:2100000
KS ci ratio: 1.031581e-01	ci left: 6.516896e-04	ci right 7.230323e-04	k: 1442	n:2100000
CTNNB1   2100000 perm   2224 sec   (944 perm/sec)   p_kst 6.866667e-04   p_cons 2.395681e-01   p_joint 8.219048e-04

Joint ci ratio: 9.399011e-02	ci left: 7.849746e-04	ci right 8.628514e-04	k: 1737	n:2110000
Cons ci ratio: 4.808229e-03	ci left: 2.389712e-01	ci right 2.401234e-01	k: 505444	n:2110000
KS ci ratio: 1.028379e-01	ci left: 6.527566e-04	ci right 7.239808e-04	k: 1451	n:2110000
CTNNB1   2110000 perm   2244 sec   (940 perm/sec)   p_kst 6.876777e-04   p_cons 2.395469e-01   p_joint 8.232227e-04

Joint ci ratio: 9.380143e-02	ci left: 7.844963e-04	ci right 8.621608e-04	k: 1744	n:2120000
Cons ci ratio: 4.796910e-03	ci left: 2.389699e-01	ci right 2.401195e-01	k: 507834	n:2120000
KS ci ratio: 1.026261e-01	ci left: 6.524350e-04	ci right 7.234687e-04	k: 1457	n:2120000
CTNNB1   2120000 perm   2265 sec   (936 perm/sec)   p_kst 6.872642e-04   p_cons 2.395443e-01   p_joint 8.226415e-04

Joint ci ratio: 9.366740e-02	ci left: 7.831055e-04	ci right 8.605155e-04	k: 1749	n:2130000
Cons ci ratio: 4.785398e-03	ci left: 2.389894e-01	ci right 2.401362e-01	k: 510268	n:2130000
KS ci ratio: 1.024506e-01	ci left: 6.516592e-04	ci right 7.224797e-04	k: 1462	n:2130000
CTNNB1   2130000 perm   2284 sec   (932 perm/sec)   p_kst 6.863850e-04   p_cons 2.395624e-01   p_joint 8.211268e-04

Joint ci ratio: 9.340088e-02	ci left: 7.840098e-04	ci right 8.612766e-04	k: 1759	n:2140000
Cons ci ratio: 4.774159e-03	ci left: 2.389942e-01	ci right 2.401383e-01	k: 512671	n:2140000
KS ci ratio: 1.021022e-01	ci left: 6.531674e-04	ci right 7.238960e-04	k: 1472	n:2140000
CTNNB1   2140000 perm   2305 sec   (928 perm/sec)   p_kst 6.878505e-04   p_cons 2.395659e-01   p_joint 8.219626e-04

Joint ci ratio: 9.318933e-02	ci left: 7.839973e-04	ci right 8.610784e-04	k: 1767	n:2150000
Cons ci ratio: 4.762902e-03	ci left: 2.390063e-01	ci right 2.401479e-01	k: 515090	n:2150000
KS ci ratio: 1.018260e-01	ci left: 6.537555e-04	ci right 7.243448e-04	k: 1480	n:2150000
CTNNB1   2150000 perm   2326 sec   (924 perm/sec)   p_kst 6.883721e-04   p_cons 2.395767e-01   p_joint 8.218605e-04

Joint ci ratio: 9.297921e-02	ci left: 7.839852e-04	ci right 8.608818e-04	k: 1775	n:2160000
Cons ci ratio: 4.752176e-03	ci left: 2.389837e-01	ci right 2.401225e-01	k: 517434	n:2160000
KS ci ratio: 1.016204e-01	ci left: 6.534359e-04	ci right 7.238398e-04	k: 1486	n:2160000
CTNNB1   2160000 perm   2346 sec   (921 perm/sec)   p_kst 6.879630e-04   p_cons 2.395528e-01   p_joint 8.217593e-04

Joint ci ratio: 9.284868e-02	ci left: 7.826230e-04	ci right 8.592723e-04	k: 1780	n:2170000
Cons ci ratio: 4.741013e-03	ci left: 2.390004e-01	ci right 2.401367e-01	k: 519863	n:2170000
KS ci ratio: 1.015181e-01	ci left: 6.517720e-04	ci right 7.219218e-04	k: 1489	n:2170000
CTNNB1   2170000 perm   2369 sec   (916 perm/sec)   p_kst 6.861751e-04   p_cons 2.395682e-01   p_joint 8.202765e-04

Joint ci ratio: 9.271869e-02	ci left: 7.812733e-04	ci right 8.576775e-04	k: 1785	n:2180000
Cons ci ratio: 4.730405e-03	ci left: 2.389803e-01	ci right 2.401139e-01	k: 522212	n:2180000
KS ci ratio: 1.013483e-01	ci left: 6.510176e-04	ci right 7.209620e-04	k: 1494	n:2180000
CTNNB1   2180000 perm   2391 sec   (912 perm/sec)   p_kst 6.853211e-04   p_cons 2.395468e-01   p_joint 8.188073e-04

Joint ci ratio: 9.258924e-02	ci left: 7.799360e-04	ci right 8.560972e-04	k: 1790	n:2190000
Cons ci ratio: 4.719376e-03	ci left: 2.389983e-01	ci right 2.401293e-01	k: 524644	n:2190000
KS ci ratio: 1.012130e-01	ci left: 6.498252e-04	ci right 7.195427e-04	k: 1498	n:2190000
CTNNB1   2190000 perm   2413 sec   (908 perm/sec)   p_kst 6.840183e-04   p_cons 2.395635e-01   p_joint 8.173516e-04

Joint ci ratio: 9.256355e-02	ci left: 7.768348e-04	ci right 8.526709e-04	k: 1791	n:2200000
Cons ci ratio: 4.709147e-03	ci left: 2.389602e-01	ci right 2.400886e-01	k: 526953	n:2200000
KS ci ratio: 1.011794e-01	ci left: 6.473144e-04	ci right 7.167381e-04	k: 1499	n:2200000
CTNNB1   2200000 perm   2439 sec   (902 perm/sec)   p_kst 6.813636e-04   p_cons 2.395241e-01   p_joint 8.140909e-04

Joint ci ratio: 9.235763e-02	ci left: 7.768559e-04	ci right 8.525163e-04	k: 1799	n:2210000
Cons ci ratio: 4.698342e-03	ci left: 2.389723e-01	ci right 2.400981e-01	k: 529372	n:2210000
KS ci ratio: 1.009777e-01	ci left: 6.470317e-04	ci right 7.162785e-04	k: 1505	n:2210000
CTNNB1   2210000 perm   2464 sec   (897 perm/sec)   p_kst 6.809955e-04   p_cons 2.395348e-01   p_joint 8.140271e-04

Joint ci ratio: 9.217859e-02	ci left: 7.764370e-04	ci right 8.519020e-04	k: 1806	n:2220000
Cons ci ratio: 4.687838e-03	ci left: 2.389666e-01	ci right 2.400899e-01	k: 531752	n:2220000
KS ci ratio: 1.007438e-01	ci left: 6.471907e-04	ci right 7.162847e-04	k: 1512	n:2220000
CTNNB1   2220000 perm   2487 sec   (893 perm/sec)   p_kst 6.810811e-04   p_cons 2.395279e-01   p_joint 8.135135e-04

Joint ci ratio: 9.182345e-02	ci left: 7.790888e-04	ci right 8.545042e-04	k: 1820	n:2230000
Cons ci ratio: 4.677432e-03	ci left: 2.389588e-01	ci right 2.400796e-01	k: 534127	n:2230000
KS ci ratio: 1.003795e-01	ci left: 6.490973e-04	ci right 7.181294e-04	k: 1523	n:2230000
CTNNB1   2230000 perm   2511 sec   (888 perm/sec)   p_kst 6.829596e-04   p_cons 2.395188e-01   p_joint 8.161435e-04

Joint ci ratio: 9.164749e-02	ci left: 7.786640e-04	ci right 8.538861e-04	k: 1827	n:2240000
Cons ci ratio: 4.667129e-03	ci left: 2.389484e-01	ci right 2.400666e-01	k: 536496	n:2240000
KS ci ratio: 1.002153e-01	ci left: 6.483756e-04	ci right 7.172116e-04	k: 1528	n:2240000
CTNNB1   2240000 perm   2535 sec   (884 perm/sec)   p_kst 6.821429e-04   p_cons 2.395071e-01   p_joint 8.156250e-04

Joint ci ratio: 9.139780e-02	ci left: 7.795460e-04	ci right 8.546372e-04	k: 1837	n:2250000
Cons ci ratio: 4.656929e-03	ci left: 2.389354e-01	ci right 2.400511e-01	k: 538859	n:2250000
KS ci ratio: 9.992159e-02	ci left: 6.493939e-04	ci right 7.181240e-04	k: 1537	n:2250000
CTNNB1   2250000 perm   2558 sec   (879 perm/sec)   p_kst 6.831111e-04   p_cons 2.394929e-01   p_joint 8.164444e-04

Outputting figure to mutsig2_images.part000000000044/CTNNB1.3_2402_2250000_0.00068311_0.23949_0.00081644.png
                gene_name: CTNNB1
               theta_stop: 0.100 
                    nperm: 2250000 
                     p_ks: 0.00068 
        ci_ks_bounds_left: 0.00065 
       ci_ks_bounds_right: 0.00072 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.00082 
     ci_joint_bounds_left: 0.00078 
    ci_joint_bounds_right: 0.00085 

Current progress: 67 percent done.
CSMD1
Processing conservation and coverage...
92% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.041202e-02	ci left: 7.785383e-01	ci right 7.946944e-01	k: 7867	n:10000
KS ci ratio: 1.385488e-02	ci left: 8.826795e-01	ci right 8.950929e-01	k: 8890	n:10000
CSMD1   10000 perm   4 sec   (2790 perm/sec)   p_kst 8.890000e-01   p_cons 7.867000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000044/CSMD1.2_10788_10000_0.889_0.7867_1.png
                gene_name: CSMD1
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
CSPG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.675415e-02	ci left: 5.222622e-01	ci right 5.419191e-01	k: 5321	n:10000
Cons ci ratio: 3.373175e-02	ci left: 5.647390e-01	ci right 5.842175e-01	k: 5745	n:10000
KS ci ratio: 5.509389e-02	ci left: 3.267412e-01	ci right 3.453544e-01	k: 3360	n:10000
CSPG4   10000 perm   2 sec   (4005 perm/sec)   p_kst 3.360000e-01   p_cons 5.745000e-01   p_joint 5.321000e-01

Outputting figure to mutsig2_images.part000000000044/CSPG4.2_7009_10000_0.336_0.5745_0.5321.png
                gene_name: CSPG4
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000044
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 44 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1538>
Subject: Job 9877033: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1538>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000045> was used as the working directory.
Started at Fri Oct  5 22:36:02 2012
Results reported at Fri Oct  5 22:37:55 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000045.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000045.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 45  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000045.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    137.19 sec.
    Max Memory :      1739 MB
    Max Swap   :      4587 MB

    Max Processes  :         7
    Max Threads    :        55

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
45
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 45
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 45: processing genes 3990 - 4080
Calculating significance of each gene.
Using projection method.
3990	CTRL	1
3991	CTSA	1
3992	CTSB	1
3993	CTSC	6.319522e-02
3994	CTSD	1
3995	CTSE	1
3996	CTSF	1
3997	CTSG	1
3998	CTSH	1
3999	CTSK	1
4000/18134 4000	CTSL1	1
4001	CTSL2	1
4002	CTSO	1
4003	CTSS	1
4004	CTSW	1
4005	CTSZ	1
4006	CTTN	1
4007	CTTNBP2	1.053564e-01
4008	CTTNBP2NL	1
4009	CTU2	1
4010	CTXN1	1
4011	CTXN3	1
4012	CUBN	1
4013	CUEDC1	1
4014	CUEDC2	1
4015	CUL1	1
4016	CUL2	6.760466e-02
4017	CUL3	1.501937e-01
4018	CUL4A	1
4019	CUL4B	1
4020	CUL5	8.875991e-02
4021	CUL7	1
4022	CUL9	4.809785e-01
4023	CUTA	1
4024	CUTC	1
4025	CUX1	1
4026	CUX2	3.471113e-01
4027	CUZD1	1
4028	CWC15	1
4029	CWC22	1
4030	CWC25	1
4031	CWC27	1
4032	CWF19L1	1
4033	CWF19L2	1
4034	CWH43	1
4035	CX3CL1	1
4036	CX3CR1	1
4037	CXADR	1
4038	CXCL1	1
4039	CXCL10	1
4040	CXCL11	1
4041	CXCL12	1
4042	CXCL13	1
4043	CXCL14	1
4044	CXCL16	1
4045	CXCL17	1
4046	CXCL2	1
4047	CXCL3	1
4048	CXCL5	1
4049	CXCL6	1
4050	CXCL9	1
4051	CXCR1	7.085116e-02
4052	CXCR2	1
4053	CXCR3	1
4054	CXCR4	1
4055	CXCR5	1
4056	CXCR6	1.756086e-02
4057	CXCR7	1
4058	CXXC1	1
4059	CXXC4	1
4060	CXXC5	1
4061	CXorf1	1
4062	CXorf21	1
4063	CXorf22	1
4064	CXorf23	1
4065	CXorf26	1
4066	CXorf27	1
4067	CXorf36	1
4068	CXorf38	1
4069	CXorf40A	1
4070	CXorf40B	1
4071	CXorf41	1
4072	CXorf48	1
4073	CXorf56	1
4074	CXorf57	1
4075	CXorf58	2.737418e-02
4076	CXorf59	1
4077	CXorf61	1
4078	CXorf65	1
4079	CXorf66	1
4080	CYB561	1
Done

Running MutSig 2:
Scatter job 45: processing genes 3990 - 4080
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CTTNBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.556943e-02	ci left: 6.924235e-01	ci right 7.104591e-01	k: 7015	n:10000
Cons ci ratio: 5.714316e-02	ci left: 3.107615e-01	ci right 3.291435e-01	k: 3199	n:10000
KS ci ratio: 2.650079e-02	ci left: 6.771026e-01	ci right 6.953888e-01	k: 6863	n:10000
CTTNBP2   10000 perm   2 sec   (4095 perm/sec)   p_kst 6.863000e-01   p_cons 3.199000e-01   p_joint 7.015000e-01

Outputting figure to mutsig2_images.part000000000045/CTTNBP2.2_5084_10000_0.6863_0.3199_0.7015.png
                gene_name: CTTNBP2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000045
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 45 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1707>
Subject: Job 9877040: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1707>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000046> was used as the working directory.
Started at Fri Oct  5 22:36:10 2012
Results reported at Fri Oct  5 22:52:28 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000046.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000046.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 46  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000046.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    992.99 sec.
    Max Memory :      1929 MB
    Max Swap   :      4676 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
46
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 46
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 46: processing genes 4081 - 4171
Calculating significance of each gene.
Using projection method.
4081	CYB561D1	1
4082	CYB561D2	1
4083	CYB5A	1
4084	CYB5B	1
4085	CYB5D1	1
4086	CYB5D2	1
4087	CYB5R1	1
4088	CYB5R2	3.277384e-02
4089	CYB5R3	1
4090	CYB5R4	1.476804e-01
4091	CYB5RL	1
4092	CYBA	1
4093	CYBASC3	1
4094	CYBB	1
4095	CYBRD1	1
4096	CYC1	4.749447e-02
4097	CYCS	1
4098	CYFIP1	1
4099	CYFIP2	1
4100	CYGB	1
4101	CYHR1	1
4102	CYLC1	1
4103	CYLC2	1
4104	CYLD	1
4105	CYP11A1	1
4106	CYP11B1	1
4107	CYP11B2	1
4108	CYP17A1	1
4109	CYP19A1	1
4110	CYP1A1	9.738890e-02
4111	CYP1A2	1
4112	CYP1B1	1
4113	CYP20A1	1
4114	CYP21A2	1.281493e-01
4115	CYP24A1	1
4116	CYP26A1	1
4117	CYP26B1	1.776099e-01
4118	CYP26C1	1
4119	CYP27A1	1
4120	CYP27B1	1.171707e-01
4121	CYP27C1	1
4122	CYP2A13	1.441853e-01
4123	CYP2A6	6.762553e-04
4124	CYP2A7	1.381506e-02
4125	CYP2B6	2.990447e-02
4126	CYP2C18	1
4127	CYP2C19	1
4128	CYP2C8	1
4129	CYP2C9	1
4130	CYP2D6	3.632700e-03
4131	CYP2E1	1
4132	CYP2F1	1
4133	CYP2J2	1
4134	CYP2R1	1
4135	CYP2S1	1
4136	CYP2U1	1
4137	CYP2W1	1
4138	CYP39A1	1
4139	CYP3A4	1
4140	CYP3A43	1.024076e-01
4141	CYP3A5	1
4142	CYP3A7	1
4143	CYP46A1	1
4144	CYP4A11	1
4145	CYP4A22	1
4146	CYP4B1	1
4147	CYP4F11	1
4148	CYP4F12	1
4149	CYP4F2	1.522881e-01
4150	CYP4F22	1
4151	CYP4F3	1
4152	CYP4F8	1
4153	CYP4V2	1
4154	CYP4X1	1
4155	CYP4Z1	1
4156	CYP51A1	1
4157	CYP7A1	1.551085e-01
4158	CYP7B1	1.429718e-01
4159	CYP8B1	1
4160	CYR61	4.304149e-02
4161	CYSLTR1	1
4162	CYSLTR2	1
4163	CYTH1	1
4164	CYTH2	1
4165	CYTH3	1
4166	CYTH4	1
4167	CYTIP	1
4168	CYTL1	2.321893e-02
4169	CYTSA	1
4170	CYTSB	1
4171	CYYR1	1
Done

Running MutSig 2:
Scatter job 46: processing genes 4081 - 4171
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CYP2D6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.242904e-01	ci left: 1.206533e-02	ci right 1.682370e-02	k: 143	n:10000
Cons ci ratio: 1.705912e-02	ci left: 8.334802e-01	ci right 8.479208e-01	k: 8408	n:10000
KS ci ratio: 1.086451e+00	ci left: 6.202064e-04	ci right 2.095219e-03	k: 12	n:10000
CYP2D6   10000 perm   2 sec   (5452 perm/sec)   p_kst 1.200000e-03   p_cons 8.408000e-01   p_joint 1.430000e-02

Joint ci ratio: 1.749006e-01	ci left: 2.235394e-02	ci right 2.668581e-02	k: 489	n:20000
Cons ci ratio: 1.243385e-02	ci left: 8.272515e-01	ci right 8.376517e-01	k: 16650	n:20000
KS ci ratio: 8.352662e-01	ci left: 6.500803e-04	ci right 1.604591e-03	k: 21	n:20000
CYP2D6   20000 perm   8 sec   (2606 perm/sec)   p_kst 1.050000e-03   p_cons 8.325000e-01   p_joint 2.445000e-02

Joint ci ratio: 2.042102e-01	ci left: 1.089357e-02	ci right 1.340224e-02	k: 363	n:30000
Cons ci ratio: 1.009132e-02	ci left: 8.299090e-01	ci right 8.383595e-01	k: 25025	n:30000
KS ci ratio: 6.529304e-01	ci left: 8.127564e-04	ci right 1.622181e-03	k: 35	n:30000
CYP2D6   30000 perm   10 sec   (3004 perm/sec)   p_kst 1.166667e-03   p_cons 8.341667e-01   p_joint 1.210000e-02

Joint ci ratio: 2.145667e-01	ci left: 7.386910e-03	ci right 9.185572e-03	k: 330	n:40000
Cons ci ratio: 8.982689e-03	ci left: 8.226772e-01	ci right 8.301253e-01	k: 33057	n:40000
KS ci ratio: 5.540182e-01	ci left: 9.063949e-04	ci right 1.619195e-03	k: 49	n:40000
CYP2D6   40000 perm   12 sec   (3234 perm/sec)   p_kst 1.225000e-03   p_cons 8.264250e-01   p_joint 8.250000e-03

Joint ci ratio: 2.084964e-01	ci left: 6.287958e-03	ci right 7.770145e-03	k: 350	n:50000
Cons ci ratio: 7.982335e-03	ci left: 8.249453e-01	ci right 8.315766e-01	k: 41414	n:50000
KS ci ratio: 5.189155e-01	ci left: 8.461434e-04	ci right 1.454170e-03	k: 56	n:50000
CYP2D6   50000 perm   16 sec   (3225 perm/sec)   p_kst 1.120000e-03   p_cons 8.282800e-01   p_joint 7.000000e-03

Joint ci ratio: 2.161832e-01	ci left: 4.860829e-03	ci right 6.054440e-03	k: 326	n:60000
Cons ci ratio: 7.314042e-03	ci left: 8.241675e-01	ci right 8.302342e-01	k: 49633	n:60000
KS ci ratio: 4.493662e-01	ci left: 9.833273e-04	ci right 1.566638e-03	k: 75	n:60000
CYP2D6   60000 perm   18 sec   (3316 perm/sec)   p_kst 1.250000e-03   p_cons 8.272167e-01   p_joint 5.433333e-03

Joint ci ratio: 1.248572e-01	ci left: 1.301806e-02	ci right 1.476543e-02	k: 971	n:70000
Cons ci ratio: 6.777959e-03	ci left: 8.241198e-01	ci right 8.297388e-01	k: 57886	n:70000
KS ci ratio: 4.249224e-01	ci left: 9.572764e-04	ci right 1.485469e-03	k: 84	n:70000
CYP2D6   70000 perm   21 sec   (3373 perm/sec)   p_kst 1.200000e-03   p_cons 8.269429e-01   p_joint 1.387143e-02

Joint ci ratio: 1.277918e-01	ci left: 1.088162e-02	ci right 1.237911e-02	k: 929	n:80000
Cons ci ratio: 6.340310e-03	ci left: 8.242980e-01	ci right 8.295533e-01	k: 66155	n:80000
KS ci ratio: 3.937285e-01	ci left: 9.946227e-04	ci right 1.492683e-03	k: 98	n:80000
CYP2D6   80000 perm   23 sec   (3437 perm/sec)   p_kst 1.225000e-03   p_cons 8.269375e-01   p_joint 1.161250e-02

Joint ci ratio: 1.284347e-01	ci left: 9.586091e-03	ci right 1.091243e-02	k: 921	n:90000
Cons ci ratio: 5.974301e-03	ci left: 8.246133e-01	ci right 8.295656e-01	k: 74439	n:90000
KS ci ratio: 3.752384e-01	ci left: 9.844840e-04	ci right 1.448628e-03	k: 108	n:90000
CYP2D6   90000 perm   26 sec   (3476 perm/sec)   p_kst 1.200000e-03   p_cons 8.271000e-01   p_joint 1.023333e-02

Joint ci ratio: 1.312592e-01	ci left: 8.259449e-03	ci right 9.429307e-03	k: 883	n:100000
Cons ci ratio: 5.674847e-03	ci left: 8.243798e-01	ci right 8.290812e-01	k: 82674	n:100000
KS ci ratio: 3.546818e-01	ci left: 1.004124e-03	ci right 1.445625e-03	k: 121	n:100000
CYP2D6   100000 perm   29 sec   (3501 perm/sec)   p_kst 1.210000e-03   p_cons 8.267400e-01   p_joint 8.830000e-03

Joint ci ratio: 1.063913e-01	ci left: 1.154190e-02	ci right 1.284764e-02	k: 1340	n:110000
Cons ci ratio: 5.407728e-03	ci left: 8.246511e-01	ci right 8.291317e-01	k: 90959	n:110000
KS ci ratio: 3.397000e-01	ci left: 1.004124e-03	ci right 1.422888e-03	k: 132	n:110000
CYP2D6   110000 perm   31 sec   (3511 perm/sec)   p_kst 1.200000e-03   p_cons 8.269000e-01   p_joint 1.218182e-02

Joint ci ratio: 1.054955e-01	ci left: 1.077455e-02	ci right 1.198257e-02	k: 1364	n:120000
Cons ci ratio: 5.176749e-03	ci left: 8.247892e-01	ci right 8.290783e-01	k: 99233	n:120000
KS ci ratio: 3.242227e-01	ci left: 1.019757e-03	ci right 1.421638e-03	k: 145	n:120000
CYP2D6   120000 perm   34 sec   (3506 perm/sec)   p_kst 1.208333e-03   p_cons 8.269417e-01   p_joint 1.136667e-02

Joint ci ratio: 1.139867e-01	ci left: 8.501229e-03	ci right 9.536234e-03	k: 1171	n:130000
Cons ci ratio: 4.965022e-03	ci left: 8.253732e-01	ci right 8.294891e-01	k: 107567	n:130000
KS ci ratio: 3.126599e-01	ci left: 1.019169e-03	ci right 1.403636e-03	k: 156	n:130000
CYP2D6   130000 perm   38 sec   (3464 perm/sec)   p_kst 1.200000e-03   p_cons 8.274385e-01   p_joint 9.007692e-03

Joint ci ratio: 1.140728e-01	ci left: 7.886916e-03	ci right 8.847899e-03	k: 1170	n:140000
Cons ci ratio: 4.788168e-03	ci left: 8.252236e-01	ci right 8.291914e-01	k: 115810	n:140000
KS ci ratio: 3.022520e-01	ci left: 1.018883e-03	ci right 1.387990e-03	k: 167	n:140000
CYP2D6   140000 perm   41 sec   (3452 perm/sec)   p_kst 1.192857e-03   p_cons 8.272143e-01   p_joint 8.357143e-03

Joint ci ratio: 1.620335e-01	ci left: 3.571678e-03	ci right 4.207735e-03	k: 582	n:150000
Cons ci ratio: 4.348703e-03	ci left: 8.423212e-01	ci right 8.459988e-01	k: 126625	n:150000
KS ci ratio: 2.857152e-01	ci left: 1.074471e-03	ci right 1.438581e-03	k: 187	n:150000
CYP2D6   150000 perm   44 sec   (3398 perm/sec)   p_kst 1.246667e-03   p_cons 8.441667e-01   p_joint 3.880000e-03

Joint ci ratio: 1.058821e-01	ci left: 8.043802e-03	ci right 8.949144e-03	k: 1358	n:160000
Cons ci ratio: 4.474441e-03	ci left: 8.256397e-01	ci right 8.293484e-01	k: 132400	n:160000
KS ci ratio: 2.756352e-01	ci left: 1.088661e-03	ci right 1.442310e-03	k: 201	n:160000
CYP2D6   160000 perm   47 sec   (3371 perm/sec)   p_kst 1.256250e-03   p_cons 8.275000e-01   p_joint 8.487500e-03

Joint ci ratio: 1.037378e-01	ci left: 7.897110e-03	ci right 8.766841e-03	k: 1415	n:170000
Cons ci ratio: 4.344958e-03	ci left: 8.254238e-01	ci right 8.290239e-01	k: 140629	n:170000
KS ci ratio: 2.696956e-01	ci left: 1.073943e-03	ci right 1.414021e-03	k: 210	n:170000
CYP2D6   170000 perm   51 sec   (3351 perm/sec)   p_kst 1.235294e-03   p_cons 8.272294e-01   p_joint 8.323529e-03

Joint ci ratio: 9.258354e-02	ci left: 9.404331e-03	ci right 1.032267e-02	k: 1774	n:180000
Cons ci ratio: 4.228470e-03	ci left: 8.250717e-01	ci right 8.285734e-01	k: 148829	n:180000
KS ci ratio: 2.611692e-01	ci left: 1.086884e-03	ci right 1.418403e-03	k: 224	n:180000
CYP2D6   180000 perm   54 sec   (3325 perm/sec)   p_kst 1.244444e-03   p_cons 8.268278e-01   p_joint 9.855556e-03

Joint ci ratio: 9.119222e-02	ci left: 9.192142e-03	ci right 1.007555e-02	k: 1829	n:190000
Cons ci ratio: 4.116316e-03	ci left: 8.250750e-01	ci right 8.284835e-01	k: 157089	n:190000
KS ci ratio: 2.544718e-01	ci left: 1.088757e-03	ci right 1.410981e-03	k: 236	n:190000
CYP2D6   190000 perm   58 sec   (3293 perm/sec)   p_kst 1.242105e-03   p_cons 8.267842e-01   p_joint 9.626316e-03

Joint ci ratio: 8.408505e-02	ci left: 1.029776e-02	ci right 1.120651e-02	k: 2149	n:200000
Cons ci ratio: 3.773473e-03	ci left: 8.420508e-01	ci right 8.452392e-01	k: 168730	n:200000
KS ci ratio: 2.472723e-01	ci left: 1.099920e-03	ci right 1.414822e-03	k: 250	n:200000
CYP2D6   200000 perm   62 sec   (3243 perm/sec)   p_kst 1.250000e-03   p_cons 8.436500e-01   p_joint 1.074500e-02

Joint ci ratio: 8.662512e-02	ci left: 9.238612e-03	ci right 1.007977e-02	k: 2027	n:210000
Cons ci ratio: 3.683695e-03	ci left: 8.420059e-01	ci right 8.451180e-01	k: 177149	n:210000
KS ci ratio: 2.438980e-01	ci left: 1.078823e-03	ci right 1.382832e-03	k: 257	n:210000
CYP2D6   210000 perm   65 sec   (3224 perm/sec)   p_kst 1.223810e-03   p_cons 8.435667e-01   p_joint 9.652381e-03

Joint ci ratio: 8.803504e-02	ci left: 8.538429e-03	ci right 9.329136e-03	k: 1964	n:220000
Cons ci ratio: 3.600157e-03	ci left: 8.419567e-01	ci right 8.449979e-01	k: 185566	n:220000
KS ci ratio: 2.345349e-01	ci left: 1.119524e-03	ci right 1.421136e-03	k: 278	n:220000
CYP2D6   220000 perm   69 sec   (3200 perm/sec)   p_kst 1.263636e-03   p_cons 8.434818e-01   p_joint 8.927273e-03

Joint ci ratio: 8.982110e-02	ci left: 7.843980e-03	ci right 8.585885e-03	k: 1888	n:230000
Cons ci ratio: 3.518692e-03	ci left: 8.421658e-01	ci right 8.451386e-01	k: 194041	n:230000
KS ci ratio: 2.276982e-01	ci left: 1.140485e-03	ci right 1.437530e-03	k: 295	n:230000
CYP2D6   230000 perm   72 sec   (3173 perm/sec)   p_kst 1.282609e-03   p_cons 8.436565e-01   p_joint 8.208696e-03

Joint ci ratio: 8.766418e-02	ci left: 7.900132e-03	ci right 8.628485e-03	k: 1982	n:240000
Cons ci ratio: 3.444147e-03	ci left: 8.422326e-01	ci right 8.451425e-01	k: 202486	n:240000
KS ci ratio: 2.210732e-01	ci left: 1.163752e-03	ci right 1.456838e-03	k: 313	n:240000
CYP2D6   240000 perm   76 sec   (3138 perm/sec)   p_kst 1.304167e-03   p_cons 8.436917e-01   p_joint 8.258333e-03

Joint ci ratio: 8.673583e-02	ci left: 7.752350e-03	ci right 8.459125e-03	k: 2025	n:250000
Cons ci ratio: 3.374198e-03	ci left: 8.422906e-01	ci right 8.451414e-01	k: 210930	n:250000
KS ci ratio: 2.176362e-01	ci left: 1.155003e-03	ci right 1.440760e-03	k: 323	n:250000
CYP2D6   250000 perm   80 sec   (3108 perm/sec)   p_kst 1.292000e-03   p_cons 8.437200e-01   p_joint 8.100000e-03

Joint ci ratio: 8.581522e-02	ci left: 7.619740e-03	ci right 8.306681e-03	k: 2069	n:260000
Cons ci ratio: 3.201363e-03	ci left: 8.508493e-01	ci right 8.535813e-01	k: 221577	n:260000
KS ci ratio: 2.127659e-01	ci left: 1.165164e-03	ci right 1.446142e-03	k: 338	n:260000
CYP2D6   260000 perm   85 sec   (3074 perm/sec)   p_kst 1.300000e-03   p_cons 8.522192e-01   p_joint 7.957692e-03

Joint ci ratio: 7.584635e-02	ci left: 9.424579e-03	ci right 1.017119e-02	k: 2644	n:270000
Cons ci ratio: 3.142728e-03	ci left: 8.507776e-01	ci right 8.534593e-01	k: 230073	n:270000
KS ci ratio: 2.103010e-01	ci left: 1.150069e-03	ci right 1.423779e-03	k: 346	n:270000
CYP2D6   270000 perm   89 sec   (3043 perm/sec)   p_kst 1.281481e-03   p_cons 8.521222e-01   p_joint 9.792593e-03

Joint ci ratio: 7.277032e-02	ci left: 9.883724e-03	ci right 1.063361e-02	k: 2871	n:280000
Cons ci ratio: 3.084926e-03	ci left: 8.508979e-01	ci right 8.535305e-01	k: 238621	n:280000
KS ci ratio: 2.058970e-01	ci left: 1.159776e-03	ci right 1.429288e-03	k: 361	n:280000
CYP2D6   280000 perm   93 sec   (3018 perm/sec)   p_kst 1.289286e-03   p_cons 8.522179e-01   p_joint 1.025357e-02

Joint ci ratio: 7.175577e-02	ci left: 9.820543e-03	ci right 1.055481e-02	k: 2953	n:290000
Cons ci ratio: 3.030240e-03	ci left: 8.510069e-01	ci right 8.535930e-01	k: 247168	n:290000
KS ci ratio: 2.017587e-01	ci left: 1.168868e-03	ci right 1.434362e-03	k: 376	n:290000
CYP2D6   290000 perm   97 sec   (2995 perm/sec)   p_kst 1.296552e-03   p_cons 8.523034e-01   p_joint 1.018276e-02

Joint ci ratio: 7.066500e-02	ci left: 9.794393e-03	ci right 1.051512e-02	k: 3045	n:300000
Cons ci ratio: 2.977179e-03	ci left: 8.512093e-01	ci right 8.537506e-01	k: 255745	n:300000
KS ci ratio: 1.983675e-01	ci left: 1.171069e-03	ci right 1.432051e-03	k: 389	n:300000
CYP2D6   300000 perm   101 sec   (2971 perm/sec)   p_kst 1.296667e-03   p_cons 8.524833e-01   p_joint 1.015000e-02

Joint ci ratio: 6.852782e-02	ci left: 1.008707e-02	ci right 1.080599e-02	k: 3237	n:310000
Cons ci ratio: 3.116923e-03	ci left: 8.348180e-01	ci right 8.374273e-01	k: 259199	n:310000
KS ci ratio: 1.963654e-01	ci left: 1.157823e-03	ci right 1.412937e-03	k: 397	n:310000
CYP2D6   310000 perm   105 sec   (2947 perm/sec)   p_kst 1.280645e-03   p_cons 8.361258e-01   p_joint 1.044194e-02

Joint ci ratio: 6.755539e-02	ci left: 1.006060e-02	ci right 1.076706e-02	k: 3331	n:320000
Cons ci ratio: 3.067528e-03	ci left: 8.348661e-01	ci right 8.374341e-01	k: 267569	n:320000
KS ci ratio: 1.927658e-01	ci left: 1.166233e-03	ci right 1.417938e-03	k: 412	n:320000
CYP2D6   320000 perm   110 sec   (2912 perm/sec)   p_kst 1.287500e-03   p_cons 8.361531e-01   p_joint 1.040938e-02

Joint ci ratio: 6.877532e-02	ci left: 9.413079e-03	ci right 1.008648e-02	k: 3216	n:330000
Cons ci ratio: 3.022447e-03	ci left: 8.347261e-01	ci right 8.372558e-01	k: 275878	n:330000
KS ci ratio: 1.916117e-01	ci left: 1.145314e-03	ci right 1.390851e-03	k: 417	n:330000
CYP2D6   330000 perm   115 sec   (2859 perm/sec)   p_kst 1.263636e-03   p_cons 8.359939e-01   p_joint 9.745455e-03

Joint ci ratio: 7.067253e-02	ci left: 8.650599e-03	ci right 9.287224e-03	k: 3048	n:340000
Cons ci ratio: 2.977921e-03	ci left: 8.347216e-01	ci right 8.372139e-01	k: 284230	n:340000
KS ci ratio: 1.886998e-01	ci left: 1.148044e-03	ci right 1.389997e-03	k: 430	n:340000
CYP2D6   340000 perm   120 sec   (2823 perm/sec)   p_kst 1.264706e-03   p_cons 8.359706e-01   p_joint 8.964706e-03

Joint ci ratio: 7.202838e-02	ci left: 8.089064e-03	ci right 8.696260e-03	k: 2936	n:350000
Cons ci ratio: 2.936407e-03	ci left: 8.346143e-01	ci right 8.370715e-01	k: 292546	n:350000
KS ci ratio: 1.852909e-01	ci left: 1.158817e-03	ci right 1.398134e-03	k: 446	n:350000
CYP2D6   350000 perm   125 sec   (2791 perm/sec)   p_kst 1.274286e-03   p_cons 8.358457e-01   p_joint 8.388571e-03

Joint ci ratio: 5.697055e-02	ci left: 1.261060e-02	ci right 1.335282e-02	k: 4672	n:360000
Cons ci ratio: 2.896200e-03	ci left: 8.345496e-01	ci right 8.369728e-01	k: 300875	n:360000
KS ci ratio: 1.818639e-01	ci left: 1.171681e-03	ci right 1.408686e-03	k: 463	n:360000
CYP2D6   360000 perm   130 sec   (2761 perm/sec)   p_kst 1.286111e-03   p_cons 8.357639e-01   p_joint 1.297778e-02

Joint ci ratio: 5.320924e-02	ci left: 1.407193e-02	ci right 1.484381e-02	k: 5348	n:370000
Cons ci ratio: 2.770340e-03	ci left: 8.428539e-01	ci right 8.451948e-01	k: 312290	n:370000
KS ci ratio: 1.801263e-01	ci left: 1.163236e-03	ci right 1.396039e-03	k: 472	n:370000
CYP2D6   370000 perm   135 sec   (2731 perm/sec)   p_kst 1.275676e-03   p_cons 8.440270e-01   p_joint 1.445405e-02

Joint ci ratio: 5.387713e-02	ci left: 1.336916e-02	ci right 1.411197e-02	k: 5220	n:380000
Cons ci ratio: 2.735564e-03	ci left: 8.426840e-01	ci right 8.449950e-01	k: 320660	n:380000
KS ci ratio: 1.788094e-01	ci left: 1.150217e-03	ci right 1.378550e-03	k: 479	n:380000
CYP2D6   380000 perm   140 sec   (2706 perm/sec)   p_kst 1.260526e-03   p_cons 8.438421e-01   p_joint 1.373684e-02

Joint ci ratio: 5.318894e-02	ci left: 1.337041e-02	ci right 1.410351e-02	k: 5356	n:390000
Cons ci ratio: 2.699751e-03	ci left: 8.427493e-01	ci right 8.450302e-01	k: 329118	n:390000
KS ci ratio: 1.777038e-01	ci left: 1.135422e-03	ci right 1.359274e-03	k: 485	n:390000
CYP2D6   390000 perm   145 sec   (2684 perm/sec)   p_kst 1.243590e-03   p_cons 8.438923e-01   p_joint 1.373333e-02

Joint ci ratio: 5.416458e-02	ci left: 1.257478e-02	ci right 1.327730e-02	k: 5169	n:400000
Cons ci ratio: 2.665687e-03	ci left: 8.427740e-01	ci right 8.450260e-01	k: 337561	n:400000
KS ci ratio: 1.764389e-01	ci left: 1.123760e-03	ci right 1.343567e-03	k: 492	n:400000
CYP2D6   400000 perm   150 sec   (2661 perm/sec)   p_kst 1.230000e-03   p_cons 8.439025e-01   p_joint 1.292250e-02

Joint ci ratio: 5.421572e-02	ci left: 1.224878e-02	ci right 1.293375e-02	k: 5161	n:410000
Cons ci ratio: 2.633003e-03	ci left: 8.427854e-01	ci right 8.450098e-01	k: 345999	n:410000
KS ci ratio: 1.738139e-01	ci left: 1.131333e-03	ci right 1.348984e-03	k: 507	n:410000
CYP2D6   410000 perm   155 sec   (2638 perm/sec)   p_kst 1.236585e-03   p_cons 8.439000e-01   p_joint 1.258780e-02

Joint ci ratio: 5.394950e-02	ci left: 1.207925e-02	ci right 1.275131e-02	k: 5213	n:420000
Cons ci ratio: 2.600810e-03	ci left: 8.428656e-01	ci right 8.450630e-01	k: 354466	n:420000
KS ci ratio: 1.719624e-01	ci left: 1.129454e-03	ci right 1.344189e-03	k: 518	n:420000
CYP2D6   420000 perm   161 sec   (2617 perm/sec)   p_kst 1.233333e-03   p_cons 8.439667e-01   p_joint 1.241190e-02

Joint ci ratio: 5.379574e-02	ci left: 1.186942e-02	ci right 1.252787e-02	k: 5244	n:430000
Cons ci ratio: 2.570655e-03	ci left: 8.428513e-01	ci right 8.450231e-01	k: 362894	n:430000
KS ci ratio: 1.698482e-01	ci left: 1.132127e-03	ci right 1.344453e-03	k: 531	n:430000
CYP2D6   430000 perm   166 sec   (2594 perm/sec)   p_kst 1.234884e-03   p_cons 8.439395e-01   p_joint 1.219535e-02

Joint ci ratio: 5.420211e-02	ci left: 1.142920e-02	ci right 1.206817e-02	k: 5168	n:440000
Cons ci ratio: 2.543388e-03	ci left: 8.426441e-01	ci right 8.447923e-01	k: 371237	n:440000
KS ci ratio: 1.668928e-01	ci left: 1.147760e-03	ci right 1.358896e-03	k: 550	n:440000
CYP2D6   440000 perm   172 sec   (2563 perm/sec)   p_kst 1.250000e-03   p_cons 8.437205e-01   p_joint 1.174545e-02

Joint ci ratio: 5.421458e-02	ci left: 1.117298e-02	ci right 1.179778e-02	k: 5167	n:450000
Cons ci ratio: 2.513956e-03	ci left: 8.427627e-01	ci right 8.448862e-01	k: 379722	n:450000
KS ci ratio: 1.653992e-01	ci left: 1.143552e-03	ci right 1.351844e-03	k: 560	n:450000
CYP2D6   450000 perm   177 sec   (2538 perm/sec)   p_kst 1.244444e-03   p_cons 8.438267e-01   p_joint 1.148222e-02

Joint ci ratio: 5.421612e-02	ci left: 1.093220e-02	ci right 1.154355e-02	k: 5168	n:460000
Cons ci ratio: 2.486465e-03	ci left: 8.427760e-01	ci right 8.448762e-01	k: 388161	n:460000
KS ci ratio: 1.635153e-01	ci left: 1.145790e-03	ci right 1.351879e-03	k: 573	n:460000
CYP2D6   460000 perm   183 sec   (2512 perm/sec)   p_kst 1.245652e-03   p_cons 8.438283e-01   p_joint 1.123478e-02

Joint ci ratio: 5.363815e-02	ci left: 1.093468e-02	ci right 1.153945e-02	k: 5280	n:470000
Cons ci ratio: 2.460393e-03	ci left: 8.427312e-01	ci right 8.448093e-01	k: 396573	n:470000
KS ci ratio: 1.615568e-01	ci left: 1.149988e-03	ci right 1.354113e-03	k: 587	n:470000
CYP2D6   470000 perm   189 sec   (2485 perm/sec)   p_kst 1.248936e-03   p_cons 8.437723e-01   p_joint 1.123404e-02

Joint ci ratio: 5.401283e-02	ci left: 1.056090e-02	ci right 1.114920e-02	k: 5209	n:480000
Cons ci ratio: 2.434354e-03	ci left: 8.427719e-01	ci right 8.448281e-01	k: 405025	n:480000
KS ci ratio: 1.596669e-01	ci left: 1.154024e-03	ci right 1.356240e-03	k: 601	n:480000
CYP2D6   480000 perm   195 sec   (2462 perm/sec)   p_kst 1.252083e-03   p_cons 8.438021e-01   p_joint 1.085208e-02

Joint ci ratio: 5.353287e-02	ci left: 1.053462e-02	ci right 1.111608e-02	k: 5303	n:490000
Cons ci ratio: 2.409293e-03	ci left: 8.427927e-01	ci right 8.448277e-01	k: 413468	n:490000
KS ci ratio: 1.583575e-01	ci left: 1.150068e-03	ci right 1.349781e-03	k: 611	n:490000
CYP2D6   490000 perm   201 sec   (2442 perm/sec)   p_kst 1.246939e-03   p_cons 8.438122e-01   p_joint 1.082245e-02

Joint ci ratio: 5.435244e-02	ci left: 1.001607e-02	ci right 1.057763e-02	k: 5147	n:500000
Cons ci ratio: 2.385080e-03	ci left: 8.428027e-01	ci right 8.448173e-01	k: 421906	n:500000
KS ci ratio: 1.575879e-01	ci left: 1.138592e-03	ci right 1.335260e-03	k: 617	n:500000
CYP2D6   500000 perm   206 sec   (2423 perm/sec)   p_kst 1.234000e-03   p_cons 8.438120e-01   p_joint 1.029400e-02

Joint ci ratio: 5.379603e-02	ci left: 1.002664e-02	ci right 1.058287e-02	k: 5254	n:510000
Cons ci ratio: 2.362532e-03	ci left: 8.427063e-01	ci right 8.447015e-01	k: 430290	n:510000
KS ci ratio: 1.557091e-01	ci left: 1.144526e-03	ci right 1.339642e-03	k: 632	n:510000
CYP2D6   510000 perm   212 sec   (2405 perm/sec)   p_kst 1.239216e-03   p_cons 8.437059e-01   p_joint 1.030196e-02

Joint ci ratio: 5.377558e-02	ci left: 9.843282e-03	ci right 1.038912e-02	k: 5259	n:520000
Cons ci ratio: 2.341054e-03	ci left: 8.425636e-01	ci right 8.445403e-01	k: 438648	n:520000
KS ci ratio: 1.549773e-01	ci left: 1.133605e-03	ci right 1.325867e-03	k: 638	n:520000
CYP2D6   520000 perm   218 sec   (2385 perm/sec)   p_kst 1.226923e-03   p_cons 8.435538e-01   p_joint 1.011346e-02

Joint ci ratio: 5.379109e-02	ci left: 9.653812e-03	ci right 1.018930e-02	k: 5257	n:530000
Cons ci ratio: 2.318474e-03	ci left: 8.426174e-01	ci right 8.445751e-01	k: 447107	n:530000
KS ci ratio: 1.529554e-01	ci left: 1.143057e-03	ci right 1.334161e-03	k: 655	n:530000
CYP2D6   530000 perm   224 sec   (2367 perm/sec)   p_kst 1.235849e-03   p_cons 8.435981e-01   p_joint 9.918868e-03

Joint ci ratio: 5.371876e-02	ci left: 9.502422e-03	ci right 1.002878e-02	k: 5272	n:540000
Cons ci ratio: 2.296567e-03	ci left: 8.426656e-01	ci right 8.446048e-01	k: 455564	n:540000
KS ci ratio: 1.519173e-01	ci left: 1.137920e-03	ci right 1.326756e-03	k: 664	n:540000
CYP2D6   540000 perm   230 sec   (2349 perm/sec)   p_kst 1.229630e-03   p_cons 8.436370e-01   p_joint 9.762963e-03

Joint ci ratio: 5.397737e-02	ci left: 9.241726e-03	ci right 9.756188e-03	k: 5223	n:550000
Cons ci ratio: 2.275396e-03	ci left: 8.426975e-01	ci right 8.446189e-01	k: 464013	n:550000
KS ci ratio: 1.509001e-01	ci left: 1.132974e-03	ci right 1.319617e-03	k: 673	n:550000
CYP2D6   550000 perm   236 sec   (2329 perm/sec)   p_kst 1.223636e-03   p_cons 8.436600e-01   p_joint 9.496364e-03

Joint ci ratio: 5.364612e-02	ci left: 9.191198e-03	ci right 9.699610e-03	k: 5288	n:560000
Cons ci ratio: 2.254906e-03	ci left: 8.427158e-01	ci right 8.446199e-01	k: 472455	n:560000
KS ci ratio: 1.499030e-01	ci left: 1.128208e-03	ci right 1.312728e-03	k: 682	n:560000
CYP2D6   560000 perm   243 sec   (2307 perm/sec)   p_kst 1.217857e-03   p_cons 8.436696e-01   p_joint 9.442857e-03

Joint ci ratio: 5.318566e-02	ci left: 9.189197e-03	ci right 9.693001e-03	k: 5380	n:570000
Cons ci ratio: 2.234989e-03	ci left: 8.427300e-01	ci right 8.446174e-01	k: 480895	n:570000
KS ci ratio: 1.483896e-01	ci left: 1.132060e-03	ci right 1.315175e-03	k: 696	n:570000
CYP2D6   570000 perm   249 sec   (2289 perm/sec)   p_kst 1.221053e-03   p_cons 8.436754e-01   p_joint 9.438596e-03

Joint ci ratio: 5.425866e-02	ci left: 8.676896e-03	ci right 9.162511e-03	k: 5172	n:580000
Cons ci ratio: 2.216416e-03	ci left: 8.426453e-01	ci right 8.445167e-01	k: 489278	n:580000
KS ci ratio: 1.477558e-01	ci left: 1.122503e-03	ci right 1.303228e-03	k: 702	n:580000
CYP2D6   580000 perm   255 sec   (2271 perm/sec)   p_kst 1.210345e-03   p_cons 8.435828e-01   p_joint 8.917241e-03

Joint ci ratio: 5.403668e-02	ci left: 8.601716e-03	ci right 9.081092e-03	k: 5215	n:590000
Cons ci ratio: 2.197720e-03	ci left: 8.426332e-01	ci right 8.444888e-01	k: 497702	n:590000
KS ci ratio: 1.468194e-01	ci left: 1.118170e-03	ci right 1.296956e-03	k: 711	n:590000
CYP2D6   590000 perm   262 sec   (2253 perm/sec)   p_kst 1.205085e-03   p_cons 8.435627e-01   p_joint 8.838983e-03

Joint ci ratio: 5.371442e-02	ci left: 8.561935e-03	ci right 9.036159e-03	k: 5278	n:600000
Cons ci ratio: 2.179337e-03	ci left: 8.426400e-01	ci right 8.444800e-01	k: 506137	n:600000
KS ci ratio: 1.449973e-01	ci left: 1.128439e-03	ci right 1.306434e-03	k: 729	n:600000
CYP2D6   600000 perm   268 sec   (2236 perm/sec)   p_kst 1.215000e-03   p_cons 8.435617e-01   p_joint 8.796667e-03

Joint ci ratio: 5.428125e-02	ci left: 8.246880e-03	ci right 8.708626e-03	k: 5170	n:610000
Cons ci ratio: 2.162254e-03	ci left: 8.425431e-01	ci right 8.443684e-01	k: 514509	n:610000
KS ci ratio: 1.433373e-01	ci left: 1.136804e-03	ci right 1.313890e-03	k: 746	n:610000
CYP2D6   610000 perm   275 sec   (2218 perm/sec)   p_kst 1.222951e-03   p_cons 8.434574e-01   p_joint 8.475410e-03

Joint ci ratio: 5.538088e-02	ci left: 7.794067e-03	ci right 8.239581e-03	k: 4969	n:620000
Cons ci ratio: 2.144465e-03	ci left: 8.425851e-01	ci right 8.443955e-01	k: 522965	n:620000
KS ci ratio: 1.424820e-01	ci left: 1.132465e-03	ci right 1.307733e-03	k: 755	n:620000
CYP2D6   620000 perm   282 sec   (2202 perm/sec)   p_kst 1.217742e-03   p_cons 8.434919e-01   p_joint 8.014516e-03

Joint ci ratio: 5.550274e-02	ci left: 7.637463e-03	ci right 8.075017e-03	k: 4948	n:630000
Cons ci ratio: 2.127095e-03	ci left: 8.426275e-01	ci right 8.444233e-01	k: 531422	n:630000
KS ci ratio: 1.409973e-01	ci left: 1.138986e-03	ci right 1.313272e-03	k: 771	n:630000
CYP2D6   630000 perm   289 sec   (2184 perm/sec)   p_kst 1.223810e-03   p_cons 8.435270e-01   p_joint 7.853968e-03

Joint ci ratio: 5.538787e-02	ci left: 7.550476e-03	ci right 7.982122e-03	k: 4969	n:640000
Cons ci ratio: 2.110602e-03	ci left: 8.426107e-01	ci right 8.443925e-01	k: 539842	n:640000
KS ci ratio: 1.396469e-01	ci left: 1.143804e-03	ci right 1.317011e-03	k: 786	n:640000
CYP2D6   640000 perm   295 sec   (2167 perm/sec)   p_kst 1.228125e-03   p_cons 8.435031e-01   p_joint 7.764063e-03

Joint ci ratio: 5.611247e-02	ci left: 7.243139e-03	ci right 7.662807e-03	k: 4843	n:650000
Cons ci ratio: 2.094109e-03	ci left: 8.426422e-01	ci right 8.444101e-01	k: 548293	n:650000
KS ci ratio: 1.384209e-01	ci left: 1.146996e-03	ci right 1.319037e-03	k: 800	n:650000
CYP2D6   650000 perm   302 sec   (2151 perm/sec)   p_kst 1.230769e-03   p_cons 8.435277e-01   p_joint 7.450769e-03

Joint ci ratio: 5.576876e-02	ci left: 7.223030e-03	ci right 7.638887e-03	k: 4903	n:660000
Cons ci ratio: 2.078115e-03	ci left: 8.426576e-01	ci right 8.444121e-01	k: 556734	n:660000
KS ci ratio: 1.376501e-01	ci left: 1.142783e-03	ci right 1.313159e-03	k: 809	n:660000
CYP2D6   660000 perm   309 sec   (2136 perm/sec)   p_kst 1.225758e-03   p_cons 8.435364e-01   p_joint 7.428788e-03

Joint ci ratio: 5.610126e-02	ci left: 7.031319e-03	ci right 7.438631e-03	k: 4846	n:670000
Cons ci ratio: 2.063299e-03	ci left: 8.425680e-01	ci right 8.443097e-01	k: 565105	n:670000
KS ci ratio: 1.367250e-01	ci left: 1.141581e-03	ci right 1.310540e-03	k: 820	n:670000
CYP2D6   670000 perm   316 sec   (2121 perm/sec)   p_kst 1.223881e-03   p_cons 8.434403e-01   p_joint 7.232836e-03

Joint ci ratio: 5.591288e-02	ci left: 6.975762e-03	ci right 7.378454e-03	k: 4879	n:680000
Cons ci ratio: 2.048190e-03	ci left: 8.425591e-01	ci right 8.442880e-01	k: 573529	n:680000
KS ci ratio: 1.351692e-01	ci left: 1.151784e-03	ci right 1.320158e-03	k: 839	n:680000
CYP2D6   680000 perm   323 sec   (2105 perm/sec)   p_kst 1.233824e-03   p_cons 8.434250e-01   p_joint 7.175000e-03

Joint ci ratio: 5.559544e-02	ci left: 6.954690e-03	ci right 7.353813e-03	k: 4935	n:690000
Cons ci ratio: 2.032895e-03	ci left: 8.426173e-01	ci right 8.443334e-01	k: 581999	n:690000
KS ci ratio: 1.341352e-01	ci left: 1.153298e-03	ci right 1.320500e-03	k: 852	n:690000
CYP2D6   690000 perm   330 sec   (2089 perm/sec)   p_kst 1.234783e-03   p_cons 8.434768e-01   p_joint 7.152174e-03

Joint ci ratio: 5.553602e-02	ci left: 6.870825e-03	ci right 7.264700e-03	k: 4946	n:700000
Cons ci ratio: 2.018789e-03	ci left: 8.425623e-01	ci right 8.442663e-01	k: 590391	n:700000
KS ci ratio: 1.332787e-01	ci left: 1.152011e-03	ci right 1.317876e-03	k: 863	n:700000
CYP2D6   700000 perm   337 sec   (2075 perm/sec)   p_kst 1.232857e-03   p_cons 8.434157e-01   p_joint 7.065714e-03

Joint ci ratio: 5.961205e-02	ci left: 5.873019e-03	ci right 6.235255e-03	k: 4297	n:710000
Cons ci ratio: 2.066959e-03	ci left: 8.342771e-01	ci right 8.360047e-01	k: 592951	n:710000
KS ci ratio: 1.323627e-01	ci left: 1.152125e-03	ci right 1.316777e-03	k: 875	n:710000
CYP2D6   710000 perm   345 sec   (2060 perm/sec)   p_kst 1.232394e-03   p_cons 8.351423e-01   p_joint 6.052113e-03

Joint ci ratio: 5.917980e-02	ci left: 5.877650e-03	ci right 6.237453e-03	k: 4360	n:720000
Cons ci ratio: 2.052539e-03	ci left: 8.342853e-01	ci right 8.360009e-01	k: 601304	n:720000
KS ci ratio: 1.314654e-01	ci left: 1.152240e-03	ci right 1.315704e-03	k: 887	n:720000
CYP2D6   720000 perm   352 sec   (2045 perm/sec)   p_kst 1.231944e-03   p_cons 8.351444e-01   p_joint 6.055556e-03

Joint ci ratio: 5.916862e-02	ci left: 5.799826e-03	ci right 6.154796e-03	k: 4362	n:730000
Cons ci ratio: 2.038984e-03	ci left: 8.342165e-01	ci right 8.359205e-01	k: 609601	n:730000
KS ci ratio: 1.306587e-01	ci left: 1.151030e-03	ci right 1.313243e-03	k: 898	n:730000
CYP2D6   730000 perm   360 sec   (2030 perm/sec)   p_kst 1.230137e-03   p_cons 8.350699e-01   p_joint 5.975342e-03

Joint ci ratio: 5.881945e-02	ci left: 5.790683e-03	ci right 6.142931e-03	k: 4414	n:740000
Cons ci ratio: 2.025922e-03	ci left: 8.341185e-01	ci right 8.358114e-01	k: 617875	n:740000
KS ci ratio: 1.295819e-01	ci left: 1.155086e-03	ci right 1.316426e-03	k: 913	n:740000
CYP2D6   740000 perm   368 sec   (2013 perm/sec)   p_kst 1.233784e-03   p_cons 8.349662e-01   p_joint 5.964865e-03

Joint ci ratio: 5.599530e-02	ci left: 6.310169e-03	ci right 6.674992e-03	k: 4868	n:750000
Cons ci ratio: 2.012270e-03	ci left: 8.341380e-01	ci right 8.358195e-01	k: 626235	n:750000
KS ci ratio: 1.284621e-01	ci left: 1.160330e-03	ci right 1.320895e-03	k: 929	n:750000
CYP2D6   750000 perm   375 sec   (1999 perm/sec)   p_kst 1.238667e-03   p_cons 8.349800e-01   p_joint 6.490667e-03

Joint ci ratio: 5.561389e-02	ci left: 6.314069e-03	ci right 6.676550e-03	k: 4935	n:760000
Cons ci ratio: 1.998842e-03	ci left: 8.341636e-01	ci right 8.358339e-01	k: 634600	n:760000
KS ci ratio: 1.275735e-01	ci left: 1.161620e-03	ci right 1.321168e-03	k: 942	n:760000
CYP2D6   760000 perm   383 sec   (1984 perm/sec)   p_kst 1.239474e-03   p_cons 8.350000e-01   p_joint 6.493421e-03

Joint ci ratio: 5.530140e-02	ci left: 6.303786e-03	ci right 6.663579e-03	k: 4991	n:770000
Cons ci ratio: 1.985867e-03	ci left: 8.341625e-01	ci right 8.358220e-01	k: 642945	n:770000
KS ci ratio: 1.267695e-01	ci left: 1.161623e-03	ci right 1.320090e-03	k: 954	n:770000
CYP2D6   770000 perm   391 sec   (1968 perm/sec)   p_kst 1.238961e-03   p_cons 8.349935e-01   p_joint 6.481818e-03

Joint ci ratio: 5.496125e-02	ci left: 6.301359e-03	ci right 6.658731e-03	k: 5053	n:780000
Cons ci ratio: 1.973793e-03	ci left: 8.340703e-01	ci right 8.357195e-01	k: 651219	n:780000
KS ci ratio: 1.260457e-01	ci left: 1.160387e-03	ci right 1.317714e-03	k: 965	n:780000
CYP2D6   780000 perm   399 sec   (1954 perm/sec)   p_kst 1.237179e-03   p_cons 8.348962e-01   p_joint 6.478205e-03

Joint ci ratio: 5.505679e-02	ci left: 6.200363e-03	ci right 6.552638e-03	k: 5036	n:790000
Cons ci ratio: 1.961711e-03	ci left: 8.340122e-01	ci right 8.356512e-01	k: 659518	n:790000
KS ci ratio: 1.253343e-01	ci left: 1.159184e-03	ci right 1.315396e-03	k: 976	n:790000
CYP2D6   790000 perm   407 sec   (1941 perm/sec)   p_kst 1.235443e-03   p_cons 8.348329e-01   p_joint 6.374684e-03

Joint ci ratio: 5.195250e-02	ci left: 6.882626e-03	ci right 7.250957e-03	k: 5652	n:800000
Cons ci ratio: 1.949229e-03	ci left: 8.340433e-01	ci right 8.356718e-01	k: 667887	n:800000
KS ci ratio: 1.238837e-01	ci left: 1.172549e-03	ci right 1.328598e-03	k: 999	n:800000
CYP2D6   800000 perm   415 sec   (1927 perm/sec)   p_kst 1.248750e-03   p_cons 8.348587e-01   p_joint 7.065000e-03

Joint ci ratio: 5.164291e-02	ci left: 6.880519e-03	ci right 7.246477e-03	k: 5720	n:810000
Cons ci ratio: 1.936757e-03	ci left: 8.341057e-01	ci right 8.357240e-01	k: 676282	n:810000
KS ci ratio: 1.233302e-01	ci left: 1.168841e-03	ci right 1.323651e-03	k: 1008	n:810000
CYP2D6   810000 perm   423 sec   (1914 perm/sec)   p_kst 1.244444e-03   p_cons 8.349160e-01   p_joint 7.061728e-03

Joint ci ratio: 5.189234e-02	ci left: 6.731595e-03	ci right 7.091413e-03	k: 5666	n:820000
Cons ci ratio: 1.924887e-03	ci left: 8.341142e-01	ci right 8.357225e-01	k: 684634	n:820000
KS ci ratio: 1.225433e-01	ci left: 1.169953e-03	ci right 1.323849e-03	k: 1021	n:820000
CYP2D6   820000 perm   431 sec   (1901 perm/sec)   p_kst 1.245122e-03   p_cons 8.349195e-01   p_joint 6.909756e-03

Joint ci ratio: 5.201016e-02	ci left: 6.620753e-03	ci right 6.975473e-03	k: 5641	n:830000
Cons ci ratio: 1.913801e-03	ci left: 8.340403e-01	ci right 8.356392e-01	k: 692918	n:830000
KS ci ratio: 1.218892e-01	ci left: 1.168705e-03	ci right 1.321557e-03	k: 1032	n:830000
CYP2D6   830000 perm   439 sec   (1889 perm/sec)   p_kst 1.243373e-03   p_cons 8.348410e-01   p_joint 6.796386e-03

Joint ci ratio: 5.208668e-02	ci left: 6.523126e-03	ci right 6.873146e-03	k: 5625	n:840000
Cons ci ratio: 1.902510e-03	ci left: 8.340256e-01	ci right 8.356150e-01	k: 701250	n:840000
KS ci ratio: 1.212455e-01	ci left: 1.167488e-03	ci right 1.319318e-03	k: 1043	n:840000
CYP2D6   840000 perm   448 sec   (1875 perm/sec)   p_kst 1.241667e-03   p_cons 8.348214e-01   p_joint 6.696429e-03

Joint ci ratio: 5.194488e-02	ci left: 6.482376e-03	ci right 6.829234e-03	k: 5656	n:850000
Cons ci ratio: 1.891336e-03	ci left: 8.340229e-01	ci right 8.356030e-01	k: 709592	n:850000
KS ci ratio: 1.204975e-01	ci left: 1.168585e-03	ci right 1.319553e-03	k: 1056	n:850000
CYP2D6   850000 perm   462 sec   (1841 perm/sec)   p_kst 1.242353e-03   p_cons 8.348141e-01   p_joint 6.654118e-03

Joint ci ratio: 5.164450e-02	ci left: 6.482750e-03	ci right 6.827562e-03	k: 5722	n:860000
Cons ci ratio: 1.880673e-03	ci left: 8.339738e-01	ci right 8.355449e-01	k: 717894	n:860000
KS ci ratio: 1.198755e-01	ci left: 1.167403e-03	ci right 1.317384e-03	k: 1067	n:860000
CYP2D6   860000 perm   471 sec   (1827 perm/sec)   p_kst 1.240698e-03   p_cons 8.347605e-01   p_joint 6.653488e-03

Joint ci ratio: 5.219555e-02	ci left: 6.273212e-03	ci right 6.610546e-03	k: 5603	n:870000
Cons ci ratio: 1.869924e-03	ci left: 8.339650e-01	ci right 8.355270e-01	k: 726230	n:870000
KS ci ratio: 1.189873e-01	ci left: 1.171826e-03	ci right 1.321182e-03	k: 1083	n:870000
CYP2D6   870000 perm   480 sec   (1813 perm/sec)   p_kst 1.244828e-03   p_cons 8.347471e-01   p_joint 6.440230e-03

Joint ci ratio: 5.318545e-02	ci left: 5.972015e-03	ci right 6.299430e-03	k: 5398	n:880000
Cons ci ratio: 1.859158e-03	ci left: 8.339860e-01	ci right 8.355391e-01	k: 734592	n:880000
KS ci ratio: 1.183341e-01	ci left: 1.171741e-03	ci right 1.320209e-03	k: 1095	n:880000
CYP2D6   880000 perm   489 sec   (1801 perm/sec)   p_kst 1.244318e-03   p_cons 8.347636e-01   p_joint 6.134091e-03

Joint ci ratio: 5.292167e-02	ci left: 5.964783e-03	ci right 6.290129e-03	k: 5452	n:890000
Cons ci ratio: 1.848274e-03	ci left: 8.340516e-01	ci right 8.355957e-01	k: 742994	n:890000
KS ci ratio: 1.177981e-01	ci left: 1.169480e-03	ci right 1.316943e-03	k: 1105	n:890000
CYP2D6   890000 perm   497 sec   (1790 perm/sec)   p_kst 1.241573e-03   p_cons 8.348247e-01   p_joint 6.125843e-03

Joint ci ratio: 5.254191e-02	ci left: 5.985130e-03	ci right 6.309172e-03	k: 5531	n:900000
Cons ci ratio: 1.838223e-03	ci left: 8.340189e-01	ci right 8.355545e-01	k: 751309	n:900000
KS ci ratio: 1.171118e-01	ci left: 1.170506e-03	ci right 1.317179e-03	k: 1118	n:900000
CYP2D6   900000 perm   506 sec   (1778 perm/sec)   p_kst 1.242222e-03   p_cons 8.347878e-01   p_joint 6.145556e-03

Joint ci ratio: 5.228755e-02	ci left: 5.977921e-03	ci right 6.299960e-03	k: 5585	n:910000
Cons ci ratio: 1.828073e-03	ci left: 8.340266e-01	ci right 8.355537e-01	k: 759660	n:910000
KS ci ratio: 1.162832e-01	ci left: 1.174712e-03	ci right 1.320800e-03	k: 1134	n:910000
CYP2D6   910000 perm   515 sec   (1766 perm/sec)   p_kst 1.246154e-03   p_cons 8.347912e-01   p_joint 6.137363e-03

Joint ci ratio: 5.218601e-02	ci left: 5.936541e-03	ci right 6.255711e-03	k: 5607	n:920000
Cons ci ratio: 1.817830e-03	ci left: 8.340733e-01	ci right 8.355920e-01	k: 768047	n:920000
KS ci ratio: 1.157238e-01	ci left: 1.173553e-03	ci right 1.318747e-03	k: 1145	n:920000
CYP2D6   920000 perm   524 sec   (1755 perm/sec)   p_kst 1.244565e-03   p_cons 8.348337e-01   p_joint 6.094565e-03

Joint ci ratio: 5.293845e-02	ci left: 5.706091e-03	ci right 6.017429e-03	k: 5450	n:930000
Cons ci ratio: 1.807617e-03	ci left: 8.341406e-01	ci right 8.356508e-01	k: 776454	n:930000
KS ci ratio: 1.152723e-01	ci left: 1.170332e-03	ci right 1.314524e-03	k: 1154	n:930000
CYP2D6   930000 perm   533 sec   (1744 perm/sec)   p_kst 1.240860e-03   p_cons 8.348968e-01   p_joint 5.860215e-03

Joint ci ratio: 5.262544e-02	ci left: 5.713625e-03	ci right 6.023474e-03	k: 5515	n:940000
Cons ci ratio: 1.798150e-03	ci left: 8.341181e-01	ci right 8.356203e-01	k: 784778	n:940000
KS ci ratio: 1.144330e-01	ci left: 1.175448e-03	ci right 1.319143e-03	k: 1171	n:940000
CYP2D6   940000 perm   542 sec   (1734 perm/sec)   p_kst 1.245745e-03   p_cons 8.348702e-01   p_joint 5.867021e-03

Joint ci ratio: 4.914483e-02	ci left: 6.489103e-03	ci right 6.817074e-03	k: 6319	n:950000
Cons ci ratio: 1.788372e-03	ci left: 8.341666e-01	ci right 8.356608e-01	k: 793169	n:950000
KS ci ratio: 1.140931e-01	ci left: 1.170232e-03	ci right 1.312837e-03	k: 1178	n:950000
CYP2D6   950000 perm   552 sec   (1720 perm/sec)   p_kst 1.240000e-03   p_cons 8.349147e-01   p_joint 6.651579e-03

Joint ci ratio: 4.909965e-02	ci left: 6.433850e-03	ci right 6.758721e-03	k: 6331	n:960000
Cons ci ratio: 1.778859e-03	ci left: 8.341975e-01	ci right 8.356838e-01	k: 801544	n:960000
KS ci ratio: 1.137562e-01	ci left: 1.165126e-03	ci right 1.306661e-03	k: 1185	n:960000
CYP2D6   960000 perm   563 sec   (1706 perm/sec)   p_kst 1.234375e-03   p_cons 8.349417e-01   p_joint 6.594792e-03

Joint ci ratio: 4.908183e-02	ci left: 6.372608e-03	ci right 6.694267e-03	k: 6336	n:970000
Cons ci ratio: 1.770006e-03	ci left: 8.341483e-01	ci right 8.356270e-01	k: 809842	n:970000
KS ci ratio: 1.133272e-01	ci left: 1.162129e-03	ci right 1.302732e-03	k: 1194	n:970000
CYP2D6   970000 perm   572 sec   (1696 perm/sec)   p_kst 1.230928e-03   p_cons 8.348887e-01   p_joint 6.531959e-03

Joint ci ratio: 4.706948e-02	ci left: 6.862102e-03	ci right 7.193883e-03	k: 6886	n:980000
Cons ci ratio: 1.761121e-03	ci left: 8.341256e-01	ci right 8.355969e-01	k: 818165	n:980000
KS ci ratio: 1.123902e-01	ci left: 1.170103e-03	ci right 1.310423e-03	k: 1214	n:980000
CYP2D6   980000 perm   581 sec   (1686 perm/sec)   p_kst 1.238776e-03   p_cons 8.348622e-01   p_joint 7.026531e-03

Joint ci ratio: 4.684565e-02	ci left: 6.858671e-03	ci right 7.188667e-03	k: 6952	n:990000
Cons ci ratio: 1.752535e-03	ci left: 8.340771e-01	ci right 8.355411e-01	k: 826462	n:990000
KS ci ratio: 1.117937e-01	ci left: 1.171047e-03	ci right 1.310685e-03	k: 1227	n:990000
CYP2D6   990000 perm   591 sec   (1676 perm/sec)   p_kst 1.239394e-03   p_cons 8.348101e-01   p_joint 7.022222e-03

Joint ci ratio: 4.699729e-02	ci left: 6.746592e-03	ci right 7.072274e-03	k: 6908	n:1000000
Cons ci ratio: 1.743599e-03	ci left: 8.341047e-01	ci right 8.355613e-01	k: 834834	n:1000000
KS ci ratio: 1.113414e-01	ci left: 1.169057e-03	ci right 1.307858e-03	k: 1237	n:1000000
CYP2D6   1000000 perm   600 sec   (1666 perm/sec)   p_kst 1.237000e-03   p_cons 8.348340e-01   p_joint 6.908000e-03

Joint ci ratio: 4.679137e-02	ci left: 6.739481e-03	ci right 7.063356e-03	k: 6969	n:1010000
Cons ci ratio: 1.734955e-03	ci left: 8.341070e-01	ci right 8.355564e-01	k: 843181	n:1010000
KS ci ratio: 1.109836e-01	ci left: 1.165183e-03	ci right 1.303050e-03	k: 1245	n:1010000
CYP2D6   1010000 perm   610 sec   (1656 perm/sec)   p_kst 1.232673e-03   p_cons 8.348327e-01   p_joint 6.900000e-03

Joint ci ratio: 4.743093e-02	ci left: 6.494152e-03	ci right 6.810620e-03	k: 6784	n:1020000
Cons ci ratio: 1.726278e-03	ci left: 8.341348e-01	ci right 8.355770e-01	k: 851554	n:1020000
KS ci ratio: 1.103652e-01	ci left: 1.167105e-03	ci right 1.304380e-03	k: 1259	n:1020000
CYP2D6   1020000 perm   620 sec   (1645 perm/sec)   p_kst 1.234314e-03   p_cons 8.348569e-01   p_joint 6.650980e-03

Joint ci ratio: 4.719152e-02	ci left: 6.497300e-03	ci right 6.812280e-03	k: 6853	n:1030000
Cons ci ratio: 1.717832e-03	ci left: 8.341456e-01	ci right 8.355807e-01	k: 859910	n:1030000
KS ci ratio: 1.098434e-01	ci left: 1.167104e-03	ci right 1.303687e-03	k: 1271	n:1030000
CYP2D6   1030000 perm   630 sec   (1634 perm/sec)   p_kst 1.233981e-03   p_cons 8.348641e-01   p_joint 6.653398e-03

Joint ci ratio: 4.699330e-02	ci left: 6.489938e-03	ci right 6.803203e-03	k: 6911	n:1040000
Cons ci ratio: 1.709945e-03	ci left: 8.340858e-01	ci right 8.355142e-01	k: 868193	n:1040000
KS ci ratio: 1.092863e-01	ci left: 1.168039e-03	ci right 1.303994e-03	k: 1284	n:1040000
CYP2D6   1040000 perm   641 sec   (1623 perm/sec)   p_kst 1.234615e-03   p_cons 8.348010e-01   p_joint 6.645192e-03

Joint ci ratio: 4.755200e-02	ci left: 6.277533e-03	ci right 6.584247e-03	k: 6751	n:1050000
Cons ci ratio: 1.701477e-03	ci left: 8.341389e-01	ci right 8.355603e-01	k: 876593	n:1050000
KS ci ratio: 1.088637e-01	ci left: 1.166179e-03	ci right 1.301359e-03	k: 1294	n:1050000
CYP2D6   1050000 perm   652 sec   (1610 perm/sec)   p_kst 1.232381e-03   p_cons 8.348505e-01   p_joint 6.429524e-03

Joint ci ratio: 4.751098e-02	ci left: 6.229494e-03	ci right 6.533590e-03	k: 6763	n:1060000
Cons ci ratio: 1.693638e-03	ci left: 8.341087e-01	ci right 8.355235e-01	k: 884906	n:1060000
KS ci ratio: 1.081971e-01	ci left: 1.169862e-03	ci right 1.304586e-03	k: 1310	n:1060000
CYP2D6   1060000 perm   666 sec   (1591 perm/sec)   p_kst 1.235849e-03   p_cons 8.348170e-01   p_joint 6.380189e-03

Joint ci ratio: 4.774381e-02	ci left: 6.111241e-03	ci right 6.411067e-03	k: 6698	n:1070000
Cons ci ratio: 1.685638e-03	ci left: 8.341231e-01	ci right 8.355312e-01	k: 893266	n:1070000
KS ci ratio: 1.076646e-01	ci left: 1.170750e-03	ci right 1.304870e-03	k: 1323	n:1070000
CYP2D6   1070000 perm   677 sec   (1580 perm/sec)   p_kst 1.236449e-03   p_cons 8.348280e-01   p_joint 6.259813e-03

Joint ci ratio: 4.800548e-02	ci left: 5.988778e-03	ci right 6.284250e-03	k: 6626	n:1080000
Cons ci ratio: 1.678110e-03	ci left: 8.340779e-01	ci right 8.354796e-01	k: 901562	n:1080000
KS ci ratio: 1.071399e-01	ci left: 1.171623e-03	ci right 1.305149e-03	k: 1336	n:1080000
CYP2D6   1080000 perm   688 sec   (1571 perm/sec)   p_kst 1.237037e-03   p_cons 8.347796e-01   p_joint 6.135185e-03

Joint ci ratio: 4.860445e-02	ci left: 5.787898e-03	ci right 6.077122e-03	k: 6465	n:1090000
Cons ci ratio: 1.670566e-03	ci left: 8.340528e-01	ci right 8.354482e-01	k: 909879	n:1090000
KS ci ratio: 1.067019e-01	ci left: 1.170696e-03	ci right 1.303536e-03	k: 1347	n:1090000
CYP2D6   1090000 perm   699 sec   (1559 perm/sec)   p_kst 1.235780e-03   p_cons 8.347514e-01   p_joint 5.931193e-03

Joint ci ratio: 4.855669e-02	ci left: 5.746953e-03	ci right 6.033840e-03	k: 6478	n:1100000
Cons ci ratio: 1.663001e-03	ci left: 8.340482e-01	ci right 8.354373e-01	k: 918218	n:1100000
KS ci ratio: 1.060741e-01	ci left: 1.174212e-03	ci right 1.306618e-03	k: 1363	n:1100000
CYP2D6   1100000 perm   709 sec   (1550 perm/sec)   p_kst 1.239091e-03   p_cons 8.347436e-01   p_joint 5.889091e-03

Joint ci ratio: 4.850530e-02	ci left: 5.707635e-03	ci right 5.992250e-03	k: 6492	n:1110000
Cons ci ratio: 1.655188e-03	ci left: 8.341024e-01	ci right 8.354850e-01	k: 926622	n:1110000
KS ci ratio: 1.056490e-01	ci left: 1.173281e-03	ci right 1.305019e-03	k: 1374	n:1110000
CYP2D6   1110000 perm   720 sec   (1542 perm/sec)   p_kst 1.237838e-03   p_cons 8.347946e-01   p_joint 5.848649e-03

Joint ci ratio: 4.852537e-02	ci left: 5.652260e-03	ci right 5.934234e-03	k: 6487	n:1120000
Cons ci ratio: 1.647670e-03	ci left: 8.341243e-01	ci right 8.355007e-01	k: 934991	n:1120000
KS ci ratio: 1.050773e-01	ci left: 1.175846e-03	ci right 1.307113e-03	k: 1389	n:1120000
CYP2D6   1120000 perm   731 sec   (1532 perm/sec)   p_kst 1.240179e-03   p_cons 8.348134e-01   p_joint 5.791964e-03

Joint ci ratio: 4.832477e-02	ci left: 5.649449e-03	ci right 5.930085e-03	k: 6541	n:1130000
Cons ci ratio: 1.640311e-03	ci left: 8.341362e-01	ci right 8.355064e-01	k: 943349	n:1130000
KS ci ratio: 1.046266e-01	ci left: 1.175781e-03	ci right 1.306443e-03	k: 1401	n:1130000
CYP2D6   1130000 perm   742 sec   (1523 perm/sec)   p_kst 1.239823e-03   p_cons 8.348221e-01   p_joint 5.788496e-03

Joint ci ratio: 4.813765e-02	ci left: 5.644089e-03	ci right 5.923343e-03	k: 6592	n:1140000
Cons ci ratio: 1.633143e-03	ci left: 8.341320e-01	ci right 8.354962e-01	k: 951689	n:1140000
KS ci ratio: 1.041449e-01	ci left: 1.176573e-03	ci right 1.306684e-03	k: 1414	n:1140000
CYP2D6   1140000 perm   753 sec   (1514 perm/sec)   p_kst 1.240351e-03   p_cons 8.348149e-01   p_joint 5.782456e-03

Joint ci ratio: 4.854788e-02	ci left: 5.500504e-03	ci right 5.775038e-03	k: 6482	n:1150000
Cons ci ratio: 1.626233e-03	ci left: 8.341000e-01	ci right 8.354584e-01	k: 959997	n:1150000
KS ci ratio: 1.038519e-01	ci left: 1.173117e-03	ci right 1.302459e-03	k: 1422	n:1150000
CYP2D6   1150000 perm   764 sec   (1504 perm/sec)   p_kst 1.236522e-03   p_cons 8.347800e-01   p_joint 5.636522e-03

Joint ci ratio: 4.832841e-02	ci left: 5.503333e-03	ci right 5.776731e-03	k: 6541	n:1160000
Cons ci ratio: 1.619359e-03	ci left: 8.340772e-01	ci right 8.354298e-01	k: 968315	n:1160000
KS ci ratio: 1.035252e-01	ci left: 1.170561e-03	ci right 1.299191e-03	k: 1431	n:1160000
CYP2D6   1160000 perm   776 sec   (1494 perm/sec)   p_kst 1.233621e-03   p_cons 8.347543e-01   p_joint 5.638793e-03

Joint ci ratio: 4.856153e-02	ci left: 5.403939e-03	ci right 5.673731e-03	k: 6479	n:1170000
Cons ci ratio: 1.612322e-03	ci left: 8.340976e-01	ci right 8.354443e-01	k: 976683	n:1170000
KS ci ratio: 1.030585e-01	ci left: 1.171381e-03	ci right 1.299485e-03	k: 1444	n:1170000
CYP2D6   1170000 perm   788 sec   (1484 perm/sec)   p_kst 1.234188e-03   p_cons 8.347718e-01   p_joint 5.537607e-03

Joint ci ratio: 4.903669e-02	ci left: 5.254331e-03	ci right 5.519292e-03	k: 6355	n:1180000
Cons ci ratio: 1.605651e-03	ci left: 8.340701e-01	ci right 8.354113e-01	k: 984995	n:1180000
KS ci ratio: 1.028454e-01	ci left: 1.166407e-03	ci right 1.293688e-03	k: 1450	n:1180000
CYP2D6   1180000 perm   800 sec   (1475 perm/sec)   p_kst 1.228814e-03   p_cons 8.347415e-01   p_joint 5.385593e-03

Joint ci ratio: 4.913895e-02	ci left: 5.188592e-03	ci right 5.450799e-03	k: 6329	n:1190000
Cons ci ratio: 1.598829e-03	ci left: 8.340836e-01	ci right 8.354190e-01	k: 993355	n:1190000
KS ci ratio: 1.021436e-01	ci left: 1.172982e-03	ci right 1.300054e-03	k: 1470	n:1190000
CYP2D6   1190000 perm   811 sec   (1467 perm/sec)   p_kst 1.235294e-03   p_cons 8.347521e-01   p_joint 5.318487e-03

Joint ci ratio: 4.904278e-02	ci left: 5.165930e-03	ci right 5.426467e-03	k: 6354	n:1200000
Cons ci ratio: 1.592195e-03	ci left: 8.340793e-01	ci right 8.354091e-01	k: 1001694	n:1200000
KS ci ratio: 1.016951e-01	ci left: 1.173764e-03	ci right 1.300330e-03	k: 1483	n:1200000
CYP2D6   1200000 perm   823 sec   (1459 perm/sec)   p_kst 1.235833e-03   p_cons 8.347450e-01   p_joint 5.295000e-03

Joint ci ratio: 4.883188e-02	ci left: 5.168135e-03	ci right 5.427630e-03	k: 6409	n:1210000
Cons ci ratio: 1.585599e-03	ci left: 8.340825e-01	ci right 8.354068e-01	k: 1010042	n:1210000
KS ci ratio: 1.015587e-01	ci left: 1.167285e-03	ci right 1.292973e-03	k: 1487	n:1210000
CYP2D6   1210000 perm   834 sec   (1451 perm/sec)   p_kst 1.228926e-03   p_cons 8.347455e-01   p_joint 5.296694e-03

Joint ci ratio: 4.890587e-02	ci left: 5.110386e-03	ci right 5.367382e-03	k: 6390	n:1220000
Cons ci ratio: 1.579179e-03	ci left: 8.340692e-01	ci right 8.353882e-01	k: 1018370	n:1220000
KS ci ratio: 1.011179e-01	ci left: 1.168103e-03	ci right 1.293301e-03	k: 1500	n:1220000
CYP2D6   1220000 perm   845 sec   (1444 perm/sec)   p_kst 1.229508e-03   p_cons 8.347295e-01   p_joint 5.237705e-03

Joint ci ratio: 4.710333e-02	ci left: 5.467274e-03	ci right 5.731810e-03	k: 6886	n:1230000
Cons ci ratio: 1.572863e-03	ci left: 8.340513e-01	ci right 8.353650e-01	k: 1026692	n:1230000
KS ci ratio: 1.006829e-01	ci left: 1.168909e-03	ci right 1.293622e-03	k: 1513	n:1230000
CYP2D6   1230000 perm   856 sec   (1437 perm/sec)   p_kst 1.230081e-03   p_cons 8.347089e-01   p_joint 5.598374e-03

Joint ci ratio: 4.684180e-02	ci left: 5.484552e-03	ci right 5.748410e-03	k: 6963	n:1240000
Cons ci ratio: 1.566550e-03	ci left: 8.340466e-01	ci right 8.353550e-01	k: 1035030	n:1240000
KS ci ratio: 1.002205e-01	ci left: 1.170489e-03	ci right 1.294763e-03	k: 1527	n:1240000
CYP2D6   1240000 perm   868 sec   (1429 perm/sec)   p_kst 1.231452e-03   p_cons 8.347016e-01   p_joint 5.615323e-03

Joint ci ratio: 4.666128e-02	ci left: 5.483371e-03	ci right 5.746128e-03	k: 7017	n:1250000
Cons ci ratio: 1.560190e-03	ci left: 8.340637e-01	ci right 8.353668e-01	k: 1043395	n:1250000
KS ci ratio: 9.966739e-02	ci left: 1.174385e-03	ci right 1.298345e-03	k: 1544	n:1250000
CYP2D6   1250000 perm   879 sec   (1422 perm/sec)   p_kst 1.235200e-03   p_cons 8.347160e-01   p_joint 5.613600e-03

Outputting figure to mutsig2_images.part000000000046/CYP2D6.4_1530_1250000_0.0012352_0.83472_0.0056136.png
                gene_name: CYP2D6
               theta_stop: 0.100 
                    nperm: 1250000 
                     p_ks: 0.0012 
        ci_ks_bounds_left: 0.0012 
       ci_ks_bounds_right: 0.0013 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.0056 
     ci_joint_bounds_left: 0.0055 
    ci_joint_bounds_right: 0.0057 

Current progress: 33 percent done.
CYP2A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.347270e-02	ci left: 2.672549e-01	ci right 2.848757e-01	k: 2760	n:10000
Cons ci ratio: 4.310302e-02	ci left: 4.428093e-01	ci right 4.624183e-01	k: 4526	n:10000
KS ci ratio: 8.208438e-02	ci left: 1.780224e-01	ci right 1.933612e-01	k: 1856	n:10000
CYP2A6   10000 perm   2 sec   (6075 perm/sec)   p_kst 1.856000e-01   p_cons 4.526000e-01   p_joint 2.760000e-01

Outputting figure to mutsig2_images.part000000000046/CYP2A6.3_1521_10000_0.1856_0.4526_0.276.png
                gene_name: CYP2A6
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 67 percent done.
CYP2A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.666090e-02	ci left: 3.144328e-01	ci right 3.328701e-01	k: 3236	n:10000
Cons ci ratio: 5.535413e-02	ci left: 3.246562e-01	ci right 3.432406e-01	k: 3339	n:10000
KS ci ratio: 3.638676e-02	ci left: 5.272676e-01	ci right 5.469108e-01	k: 5371	n:10000
CYP2A7   10000 perm   2 sec   (6303 perm/sec)   p_kst 5.371000e-01   p_cons 3.339000e-01   p_joint 3.236000e-01

Outputting figure to mutsig2_images.part000000000046/CYP2A7.2_1531_10000_0.5371_0.3339_0.3236.png
                gene_name: CYP2A7
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000046
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 46 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1550>
Subject: Job 9877047: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1550>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000047> was used as the working directory.
Started at Fri Oct  5 22:36:20 2012
Results reported at Fri Oct  5 22:38:39 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000047.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000047.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 47  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000047.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    139.82 sec.
    Max Memory :      1989 MB
    Max Swap   :      4737 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
47
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 47
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 47: processing genes 4172 - 4261
Calculating significance of each gene.
Using projection method.
4172	CYorf15A	1
4173	CYorf15B	1
4174	D2HGDH	1
4175	D4S234E	1
4176	DAAM1	1
4177	DAAM2	1.000075e-02
4178	DAB1	1
4179	DAB2	1
4180	DAB2IP	1
4181	DACH1	1
4182	DACH2	1
4183	DACT1	6.086035e-03
4184	DAD1	1
4185	DAG1	1.091524e-01
4186	DAGLA	2.762167e-01
4187	DAGLB	1
4188	DAK	1
4189	DALRD3	1
4190	DAND5	1
4191	DAO	1
4192	DAOA	1
4193	DAP	1
4194	DAP3	1
In gene DAPK1 the following bins exceed PROBCAP:
    PRAD-EJ-5522	categ 6	N = 4391    n = 1	mu =   6.65e-08
4195	DAPK1	1.308884e-01
4196	DAPK2	1
4197	DAPK3	1
4198	DAPL1	1
4199	DAPP1	1
4200	DARC	1
4201	DARS	1
4202	DARS2	1
4203	DAXX	1
4204	DAZAP1	1
4205	DAZAP2	1
4206	DAZL	1
4207	DBC1	2.048481e-02
4208	DBF4	1
4209	DBF4B	1
4210	DBH	1
4211	DBI	1
4212	DBN1	1
4213	DBNDD1	1
4214	DBNDD2	1
4215	DBNL	1
4216	DBP	1
4217	DBR1	2.325662e-02
4218	DBT	1
4219	DBX1	1
4220	DBX2	1
4221	DCAF10	1
4222	DCAF11	1
4223	DCAF12	1
4224	DCAF12L1	1
4225	DCAF12L2	1
4226	DCAF13	1
4227	DCAF15	1
4228	DCAF16	1
4229	DCAF17	1
4230	DCAF4	1
4231	DCAF4L1	1
4232	DCAF4L2	1.514518e-01
4233	DCAF5	1
4234	DCAF6	1
4235	DCAF7	1
4236	DCAF8	1
4237	DCAF8L1	1
4238	DCAF8L2	1
4239	DCAKD	1
4240	DCBLD1	1.647210e-01
4241	DCBLD2	1
4242	DCC	1
4243	DCD	1
4244	DCDC1	8.454247e-02
4245	DCDC2	1
4246	DCDC2B	1
4247	DCHS1	1
4248	DCHS2	1
4249	DCI	1
4250	DCK	1
4251	DCLK1	1
4252	DCLK2	1
4253	DCLK3	1
4254	DCLRE1A	1
4255	DCLRE1B	1
In gene DCLRE1C the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 2135    n = 1	mu =   6.75e-07
4256	DCLRE1C	1.767361e-01
4257	DCN	1
4258	DCP1A	1
4259	DCP1B	1
4260	DCP2	1
4261	DCPS	1
Done

Running MutSig 2:
Scatter job 47: processing genes 4172 - 4261
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
DAAM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.601525e-02	ci left: 5.323740e-01	ci right 5.520014e-01	k: 5422	n:10000
Cons ci ratio: 1.398082e-02	ci left: 8.808366e-01	ci right 8.933369e-01	k: 8872	n:10000
KS ci ratio: 7.856994e-02	ci left: 1.914104e-01	ci right 2.071652e-01	k: 1992	n:10000
DAAM2   10000 perm   2 sec   (4092 perm/sec)   p_kst 1.992000e-01   p_cons 8.872000e-01   p_joint 5.422000e-01

Outputting figure to mutsig2_images.part000000000047/DAAM2.2_3300_10000_0.1992_0.8872_0.5422.png
                gene_name: DAAM2
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 33 percent done.
DACT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.839688e-02	ci left: 6.463937e-01	ci right 6.651154e-01	k: 6558	n:10000
Cons ci ratio: 1.131927e-02	ci left: 9.177038e-01	ci right 9.282482e-01	k: 9231	n:10000
KS ci ratio: 5.450658e-02	ci left: 3.315077e-01	ci right 3.501851e-01	k: 3408	n:10000
DACT1   10000 perm   2 sec   (5755 perm/sec)   p_kst 3.408000e-01   p_cons 9.231000e-01   p_joint 6.558000e-01

Outputting figure to mutsig2_images.part000000000047/DACT1.2_2527_10000_0.3408_0.9231_0.6558.png
                gene_name: DACT1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 67 percent done.
DBC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.344429e-02	ci left: 3.403483e-01	ci right 3.591393e-01	k: 3497	n:10000
Cons ci ratio: 3.012213e-02	ci left: 6.191440e-01	ci right 6.381810e-01	k: 6287	n:10000
KS ci ratio: 6.945106e-02	ci left: 2.331377e-01	ci right 2.500131e-01	k: 2415	n:10000
DBC1   10000 perm   2 sec   (6072 perm/sec)   p_kst 2.415000e-01   p_cons 6.287000e-01   p_joint 3.497000e-01

Outputting figure to mutsig2_images.part000000000047/DBC1.2_2314_10000_0.2415_0.6287_0.3497.png
                gene_name: DBC1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000047
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 47 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1646>
Subject: Job 9877052: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1646>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000048> was used as the working directory.
Started at Fri Oct  5 22:36:20 2012
Results reported at Fri Oct  5 22:37:53 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000048.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000048.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 48  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000048.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     82.16 sec.
    Max Memory :      1134 MB
    Max Swap   :      3924 MB

    Max Processes  :         7
    Max Threads    :        55

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
48
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 48
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 48: processing genes 4262 - 4352
Calculating significance of each gene.
Using projection method.
4262	DCST1	1
4263	DCST2	6.670009e-02
4264	DCT	1
4265	DCTD	1
4266	DCTN1	1
4267	DCTN2	1
4268	DCTN3	1
4269	DCTN4	1
4270	DCTN5	1
4271	DCTN6	1
4272	DCTPP1	1
4273	DCUN1D1	1
4274	DCUN1D2	1
4275	DCUN1D3	1
4276	DCUN1D4	1
4277	DCUN1D5	1
4278	DCX	1
4279	DCXR	1
4280	DDA1	1
4281	DDAH1	1
4282	DDAH2	1
4283	DDB1	1
4284	DDB2	1
4285	DDC	1
4286	DDHD1	1.114958e-01
4287	DDHD2	1
4288	DDI1	1
4289	DDI2	1
4290	DDIT3	1
4291	DDIT4	1
4292	DDIT4L	1
4293	DDN	1
4294	DDO	1
4295	DDOST	1
4296	DDR1	1
4297	DDR2	1
4298	DDRGK1	1
4299	DDTL	1
4300	DDX1	1
4301	DDX10	1.759118e-01
4302	DDX11	1
4303	DDX17	1
4304	DDX18	1
4305	DDX19A	1
4306	DDX19B	7.776503e-02
4307	DDX20	1
4308	DDX21	1
4309	DDX23	2.926198e-01
4310	DDX24	1
4311	DDX25	1
4312	DDX26B	1
4313	DDX27	1
4314	DDX28	8.197116e-02
4315	DDX31	1
4316	DDX39	1
4317	DDX3X	1.642041e-01
4318	DDX3Y	1
4319	DDX4	1
4320	DDX41	1
4321	DDX42	1.658915e-01
4322	DDX43	1
4323	DDX46	1
4324	DDX47	1
4325	DDX49	1
4326	DDX5	1
4327	DDX50	1
4328	DDX51	1
4329	DDX52	1
4330	DDX53	1
4331	DDX54	1
4332	DDX55	1
4333	DDX56	1
4334	DDX58	1
4335	DDX59	1
4336	DDX6	1
4337	DDX60	1
4338	DDX60L	2.464268e-01
4339	DEAF1	1
4340	DEC1	1
4341	DECR1	1
4342	DECR2	1
4343	DEDD	1
4344	DEDD2	1
4345	DEF6	1
4346	DEF8	1
4347	DEFA1	1
4348	DEFA1B	2.434563e-02
4349	DEFA3	1
4350	DEFA4	1
4351	DEFA5	1
4352	DEFA6	1
Done

Running MutSig 2:
Scatter job 48: processing genes 4262 - 4352
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000048
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 48 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 9877055: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000049> was used as the working directory.
Started at Fri Oct  5 22:36:31 2012
Results reported at Fri Oct  5 22:37:44 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000049.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000049.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 49  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000049.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     66.29 sec.
    Max Memory :      2026 MB
    Max Swap   :      4728 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
49
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 49
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 49: processing genes 4353 - 4443
Calculating significance of each gene.
Using projection method.
4353	DEFB1	1
4354	DEFB104A	1
4355	DEFB104B	1
4356	DEFB106A	1
4357	DEFB106B	1
4358	DEFB108B	1
4359	DEFB110	1
4360	DEFB112	1
4361	DEFB113	1
4362	DEFB114	1
4363	DEFB115	1
4364	DEFB116	1
4365	DEFB118	1
4366	DEFB119	1
4367	DEFB121	1
4368	DEFB123	1
4369	DEFB124	1
4370	DEFB125	1
4371	DEFB126	1
4372	DEFB127	1
4373	DEFB128	1
4374	DEFB129	1
4375	DEFB131	1
4376	DEFB132	1
4377	DEFB134	1
4378	DEFB135	2.633943e-02
4379	DEFB136	1
4380	DEFB4A	1
4381	DEGS1	1
4382	DEGS2	1
4383	DEK	1.124711e-01
4384	DEM1	1
4385	DENND1A	1
4386	DENND1B	1
4387	DENND1C	1
4388	DENND2A	1
4389	DENND2C	1
4390	DENND2D	1
4391	DENND3	8.247481e-02
4392	DENND4A	1
4393	DENND4B	1
4394	DENND4C	3.238851e-01
4395	DENND5A	1
4396	DENND5B	1
4397	DENR	1
4398	DEPDC1	2.734631e-02
4399	DEPDC1B	1
4400	DEPDC4	1
4401	DEPDC5	1
4402	DEPDC6	1
4403	DEPDC7	1
4404	DERA	1
4405	DERL1	1
4406	DERL2	1
4407	DERL3	8.193919e-03
4408	DES	1
4409	DET1	1.695861e-01
4410	DEXI	1
4411	DFFA	1
4412	DFFB	1
4413	DFNA5	8.344464e-02
4414	DFNB31	1
4415	DFNB59	1
4416	DGAT1	4.750958e-02
4417	DGAT2	1
4418	DGAT2L6	1
4419	DGCR14	6.979487e-02
4420	DGCR2	1
4421	DGCR6	1
4422	DGCR6L	1
4423	DGCR8	1
4424	DGKA	1
4425	DGKB	1
In gene DGKD the following bins exceed PROBCAP:
    PRAD-EJ-5511	categ 6	N = 3596    n = 1	mu =   2.34e-07
4426	DGKD	1.332488e-01
4427	DGKE	1
4428	DGKG	1
4429	DGKH	2.183535e-01
4430	DGKI	8.717223e-02
4431	DGKK	1
4432	DGKQ	4.035081e-03
4433	DGKZ	1
4434	DGUOK	1
4435	DHCR24	1
4436	DHCR7	1
4437	DHDDS	1
4438	DHDH	1
4439	DHDPSL	1
4440	DHFR	1.634714e-02
4441	DHFRL1	1
4442	DHH	1
4443	DHODH	1
Done

Running MutSig 2:
Scatter job 49: processing genes 4353 - 4443
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
DENND3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.280271e-02	ci left: 1.443289e-01	ci right 1.584748e-01	k: 1513	n:10000
Cons ci ratio: 1.210554e-01	ci left: 8.912712e-02	ci right 1.007101e-01	k: 948	n:10000
KS ci ratio: 2.626723e-02	ci left: 6.809317e-01	ci right 6.991575e-01	k: 6901	n:10000
DENND3   10000 perm   2 sec   (5748 perm/sec)   p_kst 6.901000e-01   p_cons 9.480000e-02   p_joint 1.513000e-01

Joint ci ratio: 5.863531e-02	ci left: 1.772671e-01	ci right 1.880253e-01	k: 3652	n:20000
Cons ci ratio: 8.423465e-02	ci left: 9.356977e-02	ci right 1.018476e-01	k: 1953	n:20000
KS ci ratio: 1.888322e-02	ci left: 6.765000e-01	ci right 6.894467e-01	k: 13660	n:20000
DENND3   20000 perm   5 sec   (3687 perm/sec)   p_kst 6.830000e-01   p_cons 9.765000e-02   p_joint 1.826000e-01

Outputting figure to mutsig2_images.part000000000049/DENND3.2_3685_20000_0.683_0.09765_0.1826.png
                gene_name: DENND3
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.098 
      ci_cons_bounds_left: 0.094 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 25 percent done.
DEPDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.219686e-02	ci left: 5.874096e-01	ci right 6.067338e-01	k: 5971	n:10000
KS ci ratio: 5.526715e-02	ci left: 3.253512e-01	ci right 3.439452e-01	k: 3346	n:10000
DEPDC1   10000 perm   1 sec   (6911 perm/sec)   p_kst 3.346000e-01   p_cons 5.971000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000049/DEPDC1.2_2484_10000_0.3346_0.5971_1.png
                gene_name: DEPDC1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
DGCR14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.113507e-02	ci left: 9.200754e-01	ci right 9.304753e-01	k: 9254	n:10000
Cons ci ratio: 6.078901e-02	ci left: 2.846853e-01	ci right 3.026351e-01	k: 2936	n:10000
KS ci ratio: 3.585304e-03	ci left: 9.898317e-01	ci right 9.934731e-01	k: 9918	n:10000
DGCR14   10000 perm   1 sec   (7435 perm/sec)   p_kst 9.918000e-01   p_cons 2.936000e-01   p_joint 9.254000e-01

Outputting figure to mutsig2_images.part000000000049/DGCR14.2_1471_10000_0.9918_0.2936_0.9254.png
                gene_name: DGCR14
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 75 percent done.
DGKQ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.781424e-02	ci left: 6.557528e-01	ci right 6.743510e-01	k: 6651	n:10000
Cons ci ratio: 4.395665e-02	ci left: 4.331321e-01	ci right 4.527012e-01	k: 4429	n:10000
KS ci ratio: 7.639762e-02	ci left: 2.003766e-01	ci right 2.163937e-01	k: 2083	n:10000
DGKQ   10000 perm   1 sec   (6704 perm/sec)   p_kst 2.083000e-01   p_cons 4.429000e-01   p_joint 6.651000e-01

Outputting figure to mutsig2_images.part000000000049/DGKQ.2_2921_10000_0.2083_0.4429_0.6651.png
                gene_name: DGKQ
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.67 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000049
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 49 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1708>
Subject: Job 9877059: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1708>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000050> was used as the working directory.
Started at Fri Oct  5 22:36:33 2012
Results reported at Sat Oct  6 00:33:15 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000050.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000050.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 50  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000050.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   7086.89 sec.
    Max Memory :      2111 MB
    Max Swap   :      4728 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
50
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 50
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 50: processing genes 4444 - 4534
Calculating significance of each gene.
Using projection method.
4444	DHPS	1
4445	DHRS1	1
4446	DHRS11	1
4447	DHRS12	1
4448	DHRS13	4.059165e-02
4449	DHRS2	1
4450	DHRS3	1
4451	DHRS4	1
4452	DHRS4L1	1
4453	DHRS4L2	1
4454	DHRS7	9.204359e-02
4455	DHRS7B	1
4456	DHRS7C	1
4457	DHRS9	1
4458	DHRSX	1
4459	DHTKD1	5.323394e-02
4460	DHX15	1
4461	DHX16	1
4462	DHX29	1
4463	DHX30	1
4464	DHX32	6.220929e-02
4465	DHX33	1
4466	DHX34	8.417376e-02
4467	DHX35	1
4468	DHX36	1
4469	DHX37	1
4470	DHX38	1
4471	DHX40	9.018063e-02
4472	DHX57	2.224434e-01
4473	DHX58	1
4474	DHX8	1
4475	DHX9	2.267801e-01
4476	DIABLO	1
4477	DIAPH1	1
4478	DIAPH2	1
4479	DIAPH3	1
4480	DICER1	1
4481	DIDO1	1
4482	DIMT1L	1
4483	DIO1	1
4484	DIO2	1
4485	DIO3	1
4486	DIP2A	1
4487	DIP2B	1
4488	DIP2C	1
4489	DIRAS1	1
4490	DIRAS2	1
4491	DIRAS3	1
4492	DIRC1	1
4493	DIRC2	1
4494	DIS3	2.866109e-02
4495	DIS3L	1
4496	DIS3L2	1
4497	DISC1	1
In gene DISP1 the following bins exceed PROBCAP:
    PRAD-EJ-5508	categ 6	N = 4603    n = 1	mu =   2.32e-07
4498	DISP1	1.716151e-01
4499	DISP2	1
4500	DIXDC1	1
4501	DKC1	1.235143e-01
4502	DKFZp761E198	1
4503	DKK1	1
4504	DKK2	5.245893e-03
4505	DKK3	1
4506	DKK4	1
4507	DKKL1	1
4508	DLAT	1
4509	DLC1	4.565566e-01
4510	DLD	1
4511	DLEC1	1
4512	DLEU7	1
4513	DLG1	1
4514	DLG2	1
4515	DLG3	1
4516	DLG4	1
4517	DLG5	1
4518	DLGAP1	1
4519	DLGAP2	1
4520	DLGAP3	1
4521	DLGAP4	1
4522	DLGAP5	1
4523	DLK1	1
4524	DLK2	1
4525	DLL1	1
4526	DLL3	1
4527	DLL4	1
4528	DLST	1
4529	DLX1	1
4530	DLX2	1
4531	DLX3	1
4532	DLX4	1
4533	DLX5	5.933368e-02
4534	DLX6	1
Done

Running MutSig 2:
Scatter job 50: processing genes 4444 - 4534
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
DHX34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.694681e-02	ci left: 3.122498e-01	ci right 3.306543e-01	k: 3214	n:10000
Cons ci ratio: 2.115807e-02	ci left: 7.660785e-01	ci right 7.825614e-01	k: 7744	n:10000
KS ci ratio: 7.700481e-02	ci left: 1.978142e-01	ci right 2.137576e-01	k: 2057	n:10000
DHX34   10000 perm   2 sec   (5327 perm/sec)   p_kst 2.057000e-01   p_cons 7.744000e-01   p_joint 3.214000e-01

Outputting figure to mutsig2_images.part000000000050/DHX34.2_3496_10000_0.2057_0.7744_0.3214.png
                gene_name: DHX34
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 33 percent done.
DIS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.599773e+00	ci left: 1.623679e-04	ci right 1.166444e-03	k: 5	n:10000
Cons ci ratio: 1.682216e-01	ci left: 4.715334e-02	ci right 5.591026e-02	k: 514	n:10000
KS ci ratio: 1.599773e+00	ci left: 1.623679e-04	ci right 1.166444e-03	k: 5	n:10000
DIS3   10000 perm   2 sec   (5636 perm/sec)   p_kst 5.000000e-04   p_cons 5.140000e-02   p_joint 5.000000e-04

Joint ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
Cons ci ratio: 1.219146e-01	ci left: 4.614611e-02	ci right 5.218582e-02	k: 982	n:20000
KS ci ratio: 1.239272e+00	ci left: 2.057886e-04	ci right 8.540675e-04	k: 9	n:20000
DIS3   20000 perm   4 sec   (5048 perm/sec)   p_kst 4.500000e-04   p_cons 4.910000e-02   p_joint 5.000000e-05

Joint ci ratio: 2.263062e+00	ci left: 8.073745e-06	ci right 2.408020e-04	k: 2	n:30000
Cons ci ratio: 7.214093e-02	ci left: 8.635850e-02	ci right 9.285457e-02	k: 2687	n:30000
KS ci ratio: 1.086959e+00	ci left: 2.067024e-04	ci right 6.986151e-04	k: 12	n:30000
DIS3   30000 perm   6 sec   (4840 perm/sec)   p_kst 4.000000e-04   p_cons 8.956667e-02   p_joint 6.666667e-05

Joint ci ratio: 1.959878e+00	ci left: 1.546707e-05	ci right 2.191660e-04	k: 3	n:40000
Cons ci ratio: 6.315590e-02	ci left: 8.506875e-02	ci right 9.064125e-02	k: 3513	n:40000
KS ci ratio: 8.990848e-01	ci left: 2.667196e-04	ci right 7.111011e-04	k: 18	n:40000
DIS3   40000 perm   9 sec   (4659 perm/sec)   p_kst 4.500000e-04   p_cons 8.782500e-02   p_joint 7.500000e-05

Joint ci ratio: 2.263123e+00	ci left: 4.844222e-06	ci right 1.444862e-04	k: 2	n:50000
Cons ci ratio: 5.650610e-02	ci left: 8.531364e-02	ci right 9.029433e-02	k: 4389	n:50000
KS ci ratio: 7.999666e-01	ci left: 2.916222e-04	ci right 6.901464e-04	k: 23	n:50000
DIS3   50000 perm   11 sec   (4527 perm/sec)   p_kst 4.600000e-04   p_cons 8.778000e-02   p_joint 4.000000e-05

Joint ci ratio: 1.600240e+00	ci left: 2.705864e-05	ci right 1.944614e-04	k: 5	n:60000
Cons ci ratio: 5.142250e-02	ci left: 8.602487e-02	ci right 9.058171e-02	k: 5297	n:60000
KS ci ratio: 7.277437e-01	ci left: 3.101183e-04	ci right 6.743932e-04	k: 28	n:60000
DIS3   60000 perm   14 sec   (4418 perm/sec)   p_kst 4.666667e-04   p_cons 8.828333e-02   p_joint 8.333333e-05

Joint ci ratio: 1.481536e+00	ci left: 3.145626e-05	ci right 1.865545e-04	k: 6	n:70000
Cons ci ratio: 4.767998e-02	ci left: 8.595372e-02	ci right 9.016622e-02	k: 6163	n:70000
KS ci ratio: 6.822187e-01	ci left: 3.127057e-04	ci right 6.452886e-04	k: 32	n:70000
DIS3   70000 perm   16 sec   (4326 perm/sec)   p_kst 4.571429e-04   p_cons 8.804286e-02   p_joint 8.571429e-05

Joint ci ratio: 1.385851e+00	ci left: 3.518024e-05	ci right 1.802751e-04	k: 7	n:80000
Cons ci ratio: 4.457480e-02	ci left: 8.618173e-02	ci right 9.012320e-02	k: 7051	n:80000
KS ci ratio: 6.721274e-01	ci left: 2.839625e-04	ci right 5.792550e-04	k: 33	n:80000
DIS3   80000 perm   19 sec   (4241 perm/sec)   p_kst 4.125000e-04   p_cons 8.813750e-02   p_joint 8.750000e-05

Joint ci ratio: 1.385860e+00	ci left: 3.127125e-05	ci right 1.602453e-04	k: 7	n:90000
Cons ci ratio: 4.204444e-02	ci left: 8.622295e-02	ci right 8.993698e-02	k: 7926	n:90000
KS ci ratio: 6.531990e-01	ci left: 2.708898e-04	ci right 5.408092e-04	k: 35	n:90000
DIS3   90000 perm   22 sec   (4157 perm/sec)   p_kst 3.888889e-04   p_cons 8.806667e-02   p_joint 7.777778e-05

Joint ci ratio: 1.306601e+00	ci left: 3.453893e-05	ci right 1.576258e-04	k: 8	n:100000
Cons ci ratio: 3.990123e-02	ci left: 8.626103e-02	ci right 8.978291e-02	k: 8801	n:100000
KS ci ratio: 6.196794e-01	ci left: 2.773424e-04	ci right 5.331047e-04	k: 39	n:100000
DIS3   100000 perm   24 sec   (4084 perm/sec)   p_kst 3.900000e-04   p_cons 8.801000e-02   p_joint 8.000000e-05

Joint ci ratio: 1.181860e+00	ci left: 4.359528e-05	ci right 1.671787e-04	k: 10	n:110000
Cons ci ratio: 3.803401e-02	ci left: 8.638627e-02	ci right 8.974457e-02	k: 9686	n:110000
KS ci ratio: 5.716660e-01	ci left: 3.061774e-04	ci right 5.577570e-04	k: 46	n:110000
DIS3   110000 perm   27 sec   (4012 perm/sec)   p_kst 4.181818e-04   p_cons 8.805455e-02   p_joint 9.090909e-05

Joint ci ratio: 1.181865e+00	ci left: 3.996227e-05	ci right 1.532476e-04	k: 10	n:120000
Cons ci ratio: 3.641600e-02	ci left: 8.645253e-02	ci right 8.966741e-02	k: 10566	n:120000
KS ci ratio: 5.487909e-01	ci left: 3.092734e-04	ci right 5.492866e-04	k: 50	n:120000
DIS3   120000 perm   30 sec   (3947 perm/sec)   p_kst 4.166667e-04   p_cons 8.805000e-02   p_joint 8.333333e-05

Joint ci ratio: 1.047604e+00	ci left: 5.324683e-05	ci right 1.709970e-04	k: 13	n:130000
Cons ci ratio: 3.492149e-02	ci left: 8.681642e-02	ci right 8.990966e-02	k: 11486	n:130000
KS ci ratio: 5.284588e-01	ci left: 3.120646e-04	ci right 5.419525e-04	k: 54	n:130000
DIS3   130000 perm   34 sec   (3880 perm/sec)   p_kst 4.153846e-04   p_cons 8.835385e-02   p_joint 1.000000e-04

Joint ci ratio: 1.047608e+00	ci left: 4.944341e-05	ci right 1.587833e-04	k: 13	n:140000
Cons ci ratio: 3.362082e-02	ci left: 8.701720e-02	ci right 8.999987e-02	k: 12390	n:140000
KS ci ratio: 5.102312e-01	ci left: 3.145991e-04	ci right 5.355279e-04	k: 58	n:140000
DIS3   140000 perm   37 sec   (3797 perm/sec)   p_kst 4.142857e-04   p_cons 8.850000e-02   p_joint 9.285714e-05

Joint ci ratio: 1.012086e+00	ci left: 5.102711e-05	ci right 1.565925e-04	k: 14	n:150000
Cons ci ratio: 3.247553e-02	ci left: 8.709378e-02	ci right 8.997548e-02	k: 13279	n:150000
KS ci ratio: 5.018008e-01	ci left: 3.052556e-04	ci right 5.148497e-04	k: 60	n:150000
DIS3   150000 perm   40 sec   (3729 perm/sec)   p_kst 4.000000e-04   p_cons 8.852667e-02   p_joint 9.333333e-05

Joint ci ratio: 9.799479e-01	ci left: 5.247208e-05	ci right 1.546217e-04	k: 15	n:160000
Cons ci ratio: 3.143375e-02	ci left: 8.719334e-02	ci right 8.998409e-02	k: 14173	n:160000
KS ci ratio: 4.861159e-01	ci left: 3.080619e-04	ci right 5.107628e-04	k: 64	n:160000
DIS3   160000 perm   44 sec   (3657 perm/sec)   p_kst 4.000000e-04   p_cons 8.858125e-02   p_joint 9.375000e-05

Joint ci ratio: 4.618772e-01	ci left: 3.261998e-04	ci right 5.267762e-04	k: 71	n:170000
Cons ci ratio: 3.048620e-02	ci left: 8.728248e-02	ci right 8.999039e-02	k: 15067	n:170000
KS ci ratio: 4.618772e-01	ci left: 3.261998e-04	ci right 5.267762e-04	k: 71	n:170000
DIS3   170000 perm   47 sec   (3607 perm/sec)   p_kst 4.176471e-04   p_cons 8.862941e-02   p_joint 4.176471e-04

Joint ci ratio: 8.764875e-01	ci left: 6.355250e-05	ci right 1.648332e-04	k: 19	n:180000
Cons ci ratio: 2.965619e-02	ci left: 8.716418e-02	ci right 8.979354e-02	k: 15925	n:180000
KS ci ratio: 4.525470e-01	ci left: 3.228240e-04	ci right 5.160853e-04	k: 74	n:180000
DIS3   180000 perm   51 sec   (3558 perm/sec)   p_kst 4.111111e-04   p_cons 8.847222e-02   p_joint 1.055556e-04

Joint ci ratio: 8.764902e-01	ci left: 6.020757e-05	ci right 1.561580e-04	k: 19	n:190000
Cons ci ratio: 2.889330e-02	ci left: 8.704356e-02	ci right 8.960060e-02	k: 16780	n:190000
KS ci ratio: 4.437603e-01	ci left: 3.198402e-04	ci right 5.064838e-04	k: 77	n:190000
DIS3   190000 perm   54 sec   (3510 perm/sec)   p_kst 4.052632e-04   p_cons 8.831579e-02   p_joint 1.000000e-04

Joint ci ratio: 4.250923e-01	ci left: 3.350218e-04	ci right 5.199626e-04	k: 84	n:200000
Cons ci ratio: 2.815228e-02	ci left: 8.712955e-02	ci right 8.962240e-02	k: 17674	n:200000
KS ci ratio: 4.250923e-01	ci left: 3.350218e-04	ci right 5.199626e-04	k: 84	n:200000
DIS3   200000 perm   58 sec   (3457 perm/sec)   p_kst 4.200000e-04   p_cons 8.837000e-02   p_joint 4.200000e-04

Joint ci ratio: 4.177848e-01	ci left: 3.318388e-04	ci right 5.109952e-04	k: 87	n:210000
Cons ci ratio: 2.745901e-02	ci left: 8.724596e-02	ci right 8.967970e-02	k: 18576	n:210000
KS ci ratio: 4.177848e-01	ci left: 3.318388e-04	ci right 5.109952e-04	k: 87	n:210000
DIS3   210000 perm   62 sec   (3411 perm/sec)   p_kst 4.142857e-04   p_cons 8.845714e-02   p_joint 4.142857e-04

Joint ci ratio: 4.063982e-01	ci left: 3.371265e-04	ci right 5.128386e-04	k: 92	n:220000
Cons ci ratio: 2.683647e-02	ci left: 8.722145e-02	ci right 8.959849e-02	k: 19449	n:220000
KS ci ratio: 4.063982e-01	ci left: 3.371265e-04	ci right 5.128386e-04	k: 92	n:220000
DIS3   220000 perm   65 sec   (3368 perm/sec)   p_kst 4.181818e-04   p_cons 8.840455e-02   p_joint 4.181818e-04

Joint ci ratio: 3.979309e-01	ci left: 3.381010e-04	ci right 5.096827e-04	k: 96	n:230000
Cons ci ratio: 2.626721e-02	ci left: 8.712186e-02	ci right 8.944505e-02	k: 20304	n:230000
KS ci ratio: 3.979309e-01	ci left: 3.381010e-04	ci right 5.096827e-04	k: 96	n:230000
DIS3   230000 perm   69 sec   (3325 perm/sec)   p_kst 4.173913e-04   p_cons 8.827826e-02   p_joint 4.173913e-04

Joint ci ratio: 3.843035e-01	ci left: 3.503128e-04	ci right 5.204656e-04	k: 103	n:240000
Cons ci ratio: 2.569077e-02	ci left: 8.729203e-02	ci right 8.956792e-02	k: 21222	n:240000
KS ci ratio: 3.843035e-01	ci left: 3.503128e-04	ci right 5.204656e-04	k: 103	n:240000
DIS3   240000 perm   73 sec   (3283 perm/sec)   p_kst 4.291667e-04   p_cons 8.842500e-02   p_joint 4.291667e-04

Joint ci ratio: 3.824717e-01	ci left: 3.399144e-04	ci right 5.040314e-04	k: 104	n:250000
Cons ci ratio: 2.517814e-02	ci left: 8.727409e-02	ci right 8.950346e-02	k: 22096	n:250000
KS ci ratio: 3.824717e-01	ci left: 3.399144e-04	ci right 5.040314e-04	k: 104	n:250000
DIS3   250000 perm   77 sec   (3240 perm/sec)   p_kst 4.160000e-04   p_cons 8.838400e-02   p_joint 4.160000e-04

Joint ci ratio: 3.753885e-01	ci left: 3.407601e-04	ci right 5.014888e-04	k: 108	n:260000
Cons ci ratio: 2.466677e-02	ci left: 8.744155e-02	ci right 8.962918e-02	k: 23018	n:260000
KS ci ratio: 3.753885e-01	ci left: 3.407601e-04	ci right 5.014888e-04	k: 108	n:260000
DIS3   260000 perm   81 sec   (3199 perm/sec)   p_kst 4.153846e-04   p_cons 8.853077e-02   p_joint 4.153846e-04

Joint ci ratio: 3.654634e-01	ci left: 3.482935e-04	ci right 5.071963e-04	k: 114	n:270000
Cons ci ratio: 2.420919e-02	ci left: 8.743862e-02	ci right 8.958503e-02	k: 23897	n:270000
KS ci ratio: 3.654634e-01	ci left: 3.482935e-04	ci right 5.071963e-04	k: 114	n:270000
DIS3   270000 perm   85 sec   (3158 perm/sec)   p_kst 4.222222e-04   p_cons 8.850741e-02   p_joint 4.222222e-04

Joint ci ratio: 3.592688e-01	ci left: 3.488396e-04	ci right 5.046630e-04	k: 118	n:280000
Cons ci ratio: 2.375409e-02	ci left: 8.758545e-02	ci right 8.969450e-02	k: 24818	n:280000
KS ci ratio: 3.592688e-01	ci left: 3.488396e-04	ci right 5.046630e-04	k: 118	n:280000
DIS3   280000 perm   90 sec   (3121 perm/sec)   p_kst 4.214286e-04   p_cons 8.863571e-02   p_joint 4.214286e-04

Joint ci ratio: 3.505393e-01	ci left: 3.556563e-04	ci right 5.097870e-04	k: 124	n:290000
Cons ci ratio: 2.334663e-02	ci left: 8.756472e-02	ci right 8.963661e-02	k: 25693	n:290000
KS ci ratio: 3.505393e-01	ci left: 3.556563e-04	ci right 5.097870e-04	k: 124	n:290000
DIS3   290000 perm   94 sec   (3083 perm/sec)   p_kst 4.275862e-04   p_cons 8.859655e-02   p_joint 4.275862e-04

Joint ci ratio: 3.477695e-01	ci left: 3.498829e-04	ci right 5.000435e-04	k: 126	n:300000
Cons ci ratio: 2.295801e-02	ci left: 8.755561e-02	ci right 8.959234e-02	k: 26571	n:300000
KS ci ratio: 3.477695e-01	ci left: 3.498829e-04	ci right 5.000435e-04	k: 126	n:300000
DIS3   300000 perm   99 sec   (3042 perm/sec)   p_kst 4.200000e-04   p_cons 8.857000e-02   p_joint 4.200000e-04

Joint ci ratio: 3.373059e-01	ci left: 3.621839e-04	ci right 5.119299e-04	k: 134	n:310000
Cons ci ratio: 2.260263e-02	ci left: 8.744466e-02	ci right 8.944691e-02	k: 27417	n:310000
KS ci ratio: 3.373059e-01	ci left: 3.621839e-04	ci right 5.119299e-04	k: 134	n:310000
DIS3   310000 perm   104 sec   (2991 perm/sec)   p_kst 4.322581e-04   p_cons 8.844194e-02   p_joint 4.322581e-04

Joint ci ratio: 3.312275e-01	ci left: 3.651795e-04	ci right 5.128635e-04	k: 139	n:320000
Cons ci ratio: 2.223824e-02	ci left: 8.752121e-02	ci right 8.949250e-02	k: 28321	n:320000
KS ci ratio: 3.312275e-01	ci left: 3.651795e-04	ci right 5.128635e-04	k: 139	n:320000
DIS3   320000 perm   108 sec   (2959 perm/sec)   p_kst 4.343750e-04   p_cons 8.850313e-02   p_joint 4.343750e-04

Joint ci ratio: 3.300525e-01	ci left: 3.568920e-04	ci right 5.006036e-04	k: 140	n:330000
Cons ci ratio: 2.190243e-02	ci left: 8.750894e-02	ci right 8.944981e-02	k: 29197	n:330000
KS ci ratio: 3.300525e-01	ci left: 3.568920e-04	ci right 5.006036e-04	k: 140	n:330000
DIS3   330000 perm   113 sec   (2926 perm/sec)   p_kst 4.242424e-04   p_cons 8.847576e-02   p_joint 4.242424e-04

Joint ci ratio: 3.277374e-01	ci left: 3.517917e-04	ci right 4.922466e-04	k: 142	n:340000
Cons ci ratio: 2.157235e-02	ci left: 8.756492e-02	ci right 8.947740e-02	k: 30096	n:340000
KS ci ratio: 3.277374e-01	ci left: 3.517917e-04	ci right 4.922466e-04	k: 142	n:340000
DIS3   340000 perm   118 sec   (2893 perm/sec)   p_kst 4.176471e-04   p_cons 8.851765e-02   p_joint 4.176471e-04

Joint ci ratio: 3.232478e-01	ci left: 3.522354e-04	ci right 4.905415e-04	k: 146	n:350000
Cons ci ratio: 2.127105e-02	ci left: 8.750985e-02	ci right 8.939411e-02	k: 30957	n:350000
KS ci ratio: 3.232478e-01	ci left: 3.522354e-04	ci right 4.905415e-04	k: 146	n:350000
DIS3   350000 perm   123 sec   (2857 perm/sec)   p_kst 4.171429e-04   p_cons 8.844857e-02   p_joint 4.171429e-04

Joint ci ratio: 3.189377e-01	ci left: 3.526668e-04	ci right 4.889189e-04	k: 150	n:360000
Cons ci ratio: 2.097409e-02	ci left: 8.751885e-02	ci right 8.937667e-02	k: 31840	n:360000
KS ci ratio: 3.189377e-01	ci left: 3.526668e-04	ci right 4.889189e-04	k: 150	n:360000
DIS3   360000 perm   127 sec   (2825 perm/sec)   p_kst 4.166667e-04   p_cons 8.844444e-02   p_joint 4.166667e-04

Joint ci ratio: 6.533007e-01	ci left: 6.588946e-05	ci right 1.315558e-04	k: 35	n:370000
Cons ci ratio: 2.071145e-02	ci left: 8.735537e-02	ci right 8.918622e-02	k: 32659	n:370000
KS ci ratio: 3.158164e-01	ci left: 3.505975e-04	ci right 4.844568e-04	k: 153	n:370000
DIS3   370000 perm   132 sec   (2794 perm/sec)   p_kst 4.135135e-04   p_cons 8.826757e-02   p_joint 9.459459e-05

Joint ci ratio: 6.533015e-01	ci left: 6.415550e-05	ci right 1.280938e-04	k: 35	n:380000
Cons ci ratio: 2.043535e-02	ci left: 8.738137e-02	ci right 8.918807e-02	k: 33547	n:380000
KS ci ratio: 3.158182e-01	ci left: 3.413710e-04	ci right 4.717084e-04	k: 153	n:380000
DIS3   380000 perm   137 sec   (2766 perm/sec)   p_kst 4.026316e-04   p_cons 8.828158e-02   p_joint 9.210526e-05

Joint ci ratio: 6.444126e-01	ci left: 6.465198e-05	ci right 1.277905e-04	k: 36	n:390000
Cons ci ratio: 2.017000e-02	ci left: 8.740620e-02	ci right 8.918967e-02	k: 34435	n:390000
KS ci ratio: 3.127867e-01	ci left: 3.397035e-04	ci right 4.679105e-04	k: 156	n:390000
DIS3   390000 perm   143 sec   (2736 perm/sec)   p_kst 4.000000e-04   p_cons 8.829487e-02   p_joint 9.230769e-05

Joint ci ratio: 6.444134e-01	ci left: 6.303566e-05	ci right 1.245958e-04	k: 36	n:400000
Cons ci ratio: 1.991751e-02	ci left: 8.740753e-02	ci right 8.916844e-02	k: 35314	n:400000
KS ci ratio: 3.108140e-01	ci left: 3.358196e-04	ci right 4.616029e-04	k: 158	n:400000
DIS3   400000 perm   148 sec   (2704 perm/sec)   p_kst 3.950000e-04   p_cons 8.828500e-02   p_joint 9.000000e-05

Joint ci ratio: 6.444142e-01	ci left: 6.149819e-05	ci right 1.215569e-04	k: 36	n:410000
Cons ci ratio: 1.966860e-02	ci left: 8.745506e-02	ci right 8.919467e-02	k: 36212	n:410000
KS ci ratio: 3.088782e-01	ci left: 3.321275e-04	ci right 4.556006e-04	k: 160	n:410000
DIS3   410000 perm   154 sec   (2670 perm/sec)   p_kst 3.902439e-04   p_cons 8.832195e-02   p_joint 8.780488e-05

Joint ci ratio: 6.444149e-01	ci left: 6.003393e-05	ci right 1.186627e-04	k: 36	n:420000
Cons ci ratio: 1.943829e-02	ci left: 8.742223e-02	ci right 8.914059e-02	k: 37077	n:420000
KS ci ratio: 3.069781e-01	ci left: 3.286137e-04	ci right 4.498818e-04	k: 162	n:420000
DIS3   420000 perm   160 sec   (2633 perm/sec)   p_kst 3.857143e-04   p_cons 8.827857e-02   p_joint 8.571429e-05

Joint ci ratio: 6.444156e-01	ci left: 5.863778e-05	ci right 1.159032e-04	k: 36	n:430000
Cons ci ratio: 1.920644e-02	ci left: 8.746977e-02	ci right 8.916834e-02	k: 37976	n:430000
KS ci ratio: 3.060418e-01	ci left: 3.231181e-04	ci right 4.419236e-04	k: 163	n:430000
DIS3   430000 perm   165 sec   (2606 perm/sec)   p_kst 3.790698e-04   p_cons 8.831628e-02   p_joint 8.372093e-05

Joint ci ratio: 6.444162e-01	ci left: 5.730509e-05	ci right 1.132691e-04	k: 36	n:440000
Cons ci ratio: 1.897574e-02	ci left: 8.757411e-02	ci right 8.925405e-02	k: 38901	n:440000
KS ci ratio: 3.041933e-01	ci left: 3.199719e-04	ci right 4.367724e-04	k: 165	n:440000
DIS3   440000 perm   171 sec   (2580 perm/sec)   p_kst 3.750000e-04   p_cons 8.841136e-02   p_joint 8.181818e-05

Joint ci ratio: 6.444168e-01	ci left: 5.603163e-05	ci right 1.107520e-04	k: 36	n:450000
Cons ci ratio: 1.875806e-02	ci left: 8.763187e-02	ci right 8.929343e-02	k: 39807	n:450000
KS ci ratio: 3.005931e-01	ci left: 3.210760e-04	ci right 4.366275e-04	k: 169	n:450000
DIS3   450000 perm   176 sec   (2555 perm/sec)   p_kst 3.755556e-04   p_cons 8.846000e-02   p_joint 8.000000e-05

Joint ci ratio: 6.276751e-01	ci left: 5.845947e-05	ci right 1.133851e-04	k: 38	n:460000
Cons ci ratio: 1.855770e-02	ci left: 8.760064e-02	ci right 8.924368e-02	k: 40673	n:460000
KS ci ratio: 2.971179e-01	ci left: 3.221399e-04	ci right 4.364813e-04	k: 173	n:460000
DIS3   460000 perm   182 sec   (2532 perm/sec)   p_kst 3.760870e-04   p_cons 8.841957e-02   p_joint 8.260870e-05

Joint ci ratio: 6.121738e-01	ci left: 6.080192e-05	ci right 1.158890e-04	k: 40	n:470000
Cons ci ratio: 1.836703e-02	ci left: 8.754117e-02	ci right 8.916604e-02	k: 41525	n:470000
KS ci ratio: 2.937605e-01	ci left: 3.231659e-04	ci right 4.363339e-04	k: 177	n:470000
DIS3   470000 perm   187 sec   (2508 perm/sec)   p_kst 3.765957e-04   p_cons 8.835106e-02   p_joint 8.510638e-05

Joint ci ratio: 6.121744e-01	ci left: 5.953520e-05	ci right 1.134746e-04	k: 40	n:480000
Cons ci ratio: 1.816003e-02	ci left: 8.767929e-02	ci right 8.928819e-02	k: 42471	n:480000
KS ci ratio: 2.905143e-01	ci left: 3.241560e-04	ci right 4.361859e-04	k: 181	n:480000
DIS3   480000 perm   193 sec   (2485 perm/sec)   p_kst 3.770833e-04   p_cons 8.848125e-02   p_joint 8.333333e-05

Joint ci ratio: 6.048426e-01	ci left: 6.004617e-05	ci right 1.135108e-04	k: 41	n:490000
Cons ci ratio: 1.797396e-02	ci left: 8.768585e-02	ci right 8.927821e-02	k: 43355	n:490000
KS ci ratio: 2.881494e-01	ci left: 3.232187e-04	ci right 4.338497e-04	k: 184	n:490000
DIS3   490000 perm   199 sec   (2462 perm/sec)   p_kst 3.755102e-04   p_cons 8.847959e-02   p_joint 8.367347e-05

Joint ci ratio: 5.977681e-01	ci left: 6.054046e-05	ci right 1.135419e-04	k: 42	n:500000
Cons ci ratio: 1.778225e-02	ci left: 8.779381e-02	ci right 8.937096e-02	k: 44290	n:500000
KS ci ratio: 2.843324e-01	ci left: 3.260366e-04	ci right 4.358885e-04	k: 189	n:500000
DIS3   500000 perm   205 sec   (2438 perm/sec)   p_kst 3.780000e-04   p_cons 8.858000e-02   p_joint 8.400000e-05

Joint ci ratio: 5.977686e-01	ci left: 5.935338e-05	ci right 1.113156e-04	k: 42	n:510000
Cons ci ratio: 1.760659e-02	ci left: 8.780584e-02	ci right 8.936746e-02	k: 45178	n:510000
KS ci ratio: 2.843334e-01	ci left: 3.196436e-04	ci right 4.273419e-04	k: 189	n:510000
DIS3   510000 perm   211 sec   (2416 perm/sec)   p_kst 3.705882e-04   p_cons 8.858431e-02   p_joint 8.235294e-05

Joint ci ratio: 5.977691e-01	ci left: 5.821196e-05	ci right 1.091750e-04	k: 42	n:520000
Cons ci ratio: 1.744808e-02	ci left: 8.770638e-02	ci right 8.925205e-02	k: 46008	n:520000
KS ci ratio: 2.843345e-01	ci left: 3.134964e-04	ci right 4.191240e-04	k: 189	n:520000
DIS3   520000 perm   218 sec   (2390 perm/sec)   p_kst 3.634615e-04   p_cons 8.847692e-02   p_joint 8.076923e-05

Joint ci ratio: 5.977696e-01	ci left: 5.711361e-05	ci right 1.071151e-04	k: 42	n:530000
Cons ci ratio: 1.727558e-02	ci left: 8.777989e-02	ci right 8.931141e-02	k: 46928	n:530000
KS ci ratio: 2.821161e-01	ci left: 3.128398e-04	ci right 4.172774e-04	k: 192	n:530000
DIS3   530000 perm   224 sec   (2367 perm/sec)   p_kst 3.622642e-04   p_cons 8.854340e-02   p_joint 7.924528e-05

Joint ci ratio: 5.977700e-01	ci left: 5.605594e-05	ci right 1.051315e-04	k: 42	n:540000
Cons ci ratio: 1.711634e-02	ci left: 8.777327e-02	ci right 8.929041e-02	k: 47806	n:540000
KS ci ratio: 2.813888e-01	ci left: 3.087674e-04	ci right 4.115326e-04	k: 193	n:540000
DIS3   540000 perm   230 sec   (2345 perm/sec)   p_kst 3.574074e-04   p_cons 8.852963e-02   p_joint 7.777778e-05

Joint ci ratio: 2.778309e-01	ci left: 3.116070e-04	ci right 4.137767e-04	k: 198	n:550000
Cons ci ratio: 1.695340e-02	ci left: 8.784302e-02	ci right 8.934677e-02	k: 48726	n:550000
KS ci ratio: 2.778309e-01	ci left: 3.116070e-04	ci right 4.137767e-04	k: 198	n:550000
DIS3   550000 perm   237 sec   (2326 perm/sec)   p_kst 3.600000e-04   p_cons 8.859273e-02   p_joint 3.600000e-04

Joint ci ratio: 2.750799e-01	ci left: 3.126904e-04	ci right 4.140246e-04	k: 202	n:560000
Cons ci ratio: 1.681007e-02	ci left: 8.776625e-02	ci right 8.925587e-02	k: 49565	n:560000
KS ci ratio: 2.750799e-01	ci left: 3.126904e-04	ci right 4.140246e-04	k: 202	n:560000
DIS3   560000 perm   243 sec   (2305 perm/sec)   p_kst 3.607143e-04   p_cons 8.850893e-02   p_joint 3.607143e-04

Joint ci ratio: 2.744055e-01	ci left: 3.088381e-04	ci right 4.086361e-04	k: 203	n:570000
Cons ci ratio: 1.666796e-02	ci left: 8.771495e-02	ci right 8.919099e-02	k: 50417	n:570000
KS ci ratio: 2.744055e-01	ci left: 3.088381e-04	ci right 4.086361e-04	k: 203	n:570000
DIS3   570000 perm   250 sec   (2284 perm/sec)   p_kst 3.561404e-04   p_cons 8.845088e-02   p_joint 3.561404e-04

Joint ci ratio: 2.704565e-01	ci left: 3.131517e-04	ci right 4.126402e-04	k: 209	n:580000
Cons ci ratio: 1.651915e-02	ci left: 8.776510e-02	ci right 8.922867e-02	k: 51327	n:580000
KS ci ratio: 2.704565e-01	ci left: 3.131517e-04	ci right 4.126402e-04	k: 209	n:580000
DIS3   580000 perm   256 sec   (2262 perm/sec)   p_kst 3.603448e-04   p_cons 8.849483e-02   p_joint 3.603448e-04

Joint ci ratio: 2.666732e-01	ci left: 3.173290e-04	ci right 4.164987e-04	k: 215	n:590000
Cons ci ratio: 1.637907e-02	ci left: 8.776632e-02	ci right 8.921739e-02	k: 52209	n:590000
KS ci ratio: 2.666732e-01	ci left: 3.173290e-04	ci right 4.164987e-04	k: 215	n:590000
DIS3   590000 perm   263 sec   (2243 perm/sec)   p_kst 3.644068e-04   p_cons 8.848983e-02   p_joint 3.644068e-04

Joint ci ratio: 2.660586e-01	ci left: 3.135954e-04	ci right 4.113349e-04	k: 216	n:600000
Cons ci ratio: 1.624619e-02	ci left: 8.773102e-02	ci right 8.916962e-02	k: 53069	n:600000
KS ci ratio: 2.660586e-01	ci left: 3.135954e-04	ci right 4.113349e-04	k: 216	n:600000
DIS3   600000 perm   270 sec   (2224 perm/sec)   p_kst 3.600000e-04   p_cons 8.844833e-02   p_joint 3.600000e-04

Joint ci ratio: 5.657805e-01	ci left: 5.661337e-05	ci right 1.024578e-04	k: 47	n:610000
Cons ci ratio: 1.611763e-02	ci left: 8.768549e-02	ci right 8.911186e-02	k: 53922	n:610000
KS ci ratio: 2.636397e-01	ci left: 3.145766e-04	ci right 4.115834e-04	k: 220	n:610000
DIS3   610000 perm   277 sec   (2205 perm/sec)   p_kst 3.606557e-04   p_cons 8.839672e-02   p_joint 7.704918e-05

Joint ci ratio: 2.618685e-01	ci left: 3.140228e-04	ci right 4.101016e-04	k: 223	n:620000
Cons ci ratio: 1.598392e-02	ci left: 8.772343e-02	ci right 8.913848e-02	k: 54826	n:620000
KS ci ratio: 2.618685e-01	ci left: 3.140228e-04	ci right 4.101016e-04	k: 223	n:620000
DIS3   620000 perm   284 sec   (2185 perm/sec)   p_kst 3.596774e-04   p_cons 8.842903e-02   p_joint 3.596774e-04

Joint ci ratio: 2.578696e-01	ci left: 3.194259e-04	ci right 4.154251e-04	k: 230	n:630000
Cons ci ratio: 1.585317e-02	ci left: 8.776338e-02	ci right 8.916739e-02	k: 55732	n:630000
KS ci ratio: 2.578696e-01	ci left: 3.194259e-04	ci right 4.154251e-04	k: 230	n:630000
DIS3   630000 perm   291 sec   (2164 perm/sec)   p_kst 3.650794e-04   p_cons 8.846349e-02   p_joint 3.650794e-04

Joint ci ratio: 2.573138e-01	ci left: 3.158964e-04	ci right 4.105974e-04	k: 231	n:640000
Cons ci ratio: 1.573015e-02	ci left: 8.775542e-02	ci right 8.914831e-02	k: 56608	n:640000
KS ci ratio: 2.573138e-01	ci left: 3.158964e-04	ci right 4.105974e-04	k: 231	n:640000
DIS3   640000 perm   298 sec   (2145 perm/sec)   p_kst 3.609375e-04   p_cons 8.845000e-02   p_joint 3.609375e-04

Joint ci ratio: 2.562121e-01	ci left: 3.139153e-04	ci right 4.075551e-04	k: 233	n:650000
Cons ci ratio: 1.560310e-02	ci left: 8.781827e-02	ci right 8.920079e-02	k: 57530	n:650000
KS ci ratio: 2.562121e-01	ci left: 3.139153e-04	ci right 4.075551e-04	k: 233	n:650000
DIS3   650000 perm   306 sec   (2126 perm/sec)   p_kst 3.584615e-04   p_cons 8.850769e-02   p_joint 3.584615e-04

Joint ci ratio: 2.556669e-01	ci left: 3.105769e-04	ci right 4.029923e-04	k: 234	n:660000
Cons ci ratio: 1.548446e-02	ci left: 8.782338e-02	ci right 8.919538e-02	k: 58415	n:660000
KS ci ratio: 2.556669e-01	ci left: 3.105769e-04	ci right 4.029923e-04	k: 234	n:660000
DIS3   660000 perm   313 sec   (2109 perm/sec)   p_kst 3.545455e-04   p_cons 8.850758e-02   p_joint 3.545455e-04

Joint ci ratio: 2.535183e-01	ci left: 3.115307e-04	ci right 4.033277e-04	k: 238	n:670000
Cons ci ratio: 1.537204e-02	ci left: 8.779121e-02	ci right 8.915265e-02	k: 59275	n:670000
KS ci ratio: 2.535183e-01	ci left: 3.115307e-04	ci right 4.033277e-04	k: 238	n:670000
DIS3   670000 perm   321 sec   (2090 perm/sec)   p_kst 3.552239e-04   p_cons 8.847015e-02   p_joint 3.552239e-04

Joint ci ratio: 2.519421e-01	ci left: 3.110817e-04	ci right 4.020870e-04	k: 241	n:680000
Cons ci ratio: 1.526119e-02	ci left: 8.776880e-02	ci right 8.912000e-02	k: 60141	n:680000
KS ci ratio: 2.519421e-01	ci left: 3.110817e-04	ci right 4.020870e-04	k: 241	n:680000
DIS3   680000 perm   328 sec   (2074 perm/sec)   p_kst 3.544118e-04   p_cons 8.844265e-02   p_joint 3.544118e-04

Joint ci ratio: 2.498853e-01	ci left: 3.120059e-04	ci right 4.024205e-04	k: 245	n:690000
Cons ci ratio: 1.515054e-02	ci left: 8.777019e-02	ci right 8.911153e-02	k: 61023	n:690000
KS ci ratio: 2.498853e-01	ci left: 3.120059e-04	ci right 4.024205e-04	k: 245	n:690000
DIS3   690000 perm   335 sec   (2057 perm/sec)   p_kst 3.550725e-04   p_cons 8.843913e-02   p_joint 3.550725e-04

Joint ci ratio: 2.473837e-01	ci left: 3.142465e-04	ci right 4.042586e-04	k: 250	n:700000
Cons ci ratio: 1.503546e-02	ci left: 8.784418e-02	ci right 8.917637e-02	k: 61956	n:700000
KS ci ratio: 2.473837e-01	ci left: 3.142465e-04	ci right 4.042586e-04	k: 250	n:700000
DIS3   700000 perm   343 sec   (2040 perm/sec)   p_kst 3.571429e-04   p_cons 8.850857e-02   p_joint 3.571429e-04

Joint ci ratio: 2.454357e-01	ci left: 3.151065e-04	ci right 4.045458e-04	k: 254	n:710000
Cons ci ratio: 1.491996e-02	ci left: 8.794841e-02	ci right 8.927185e-02	k: 62912	n:710000
KS ci ratio: 2.454357e-01	ci left: 3.151065e-04	ci right 4.045458e-04	k: 254	n:710000
DIS3   710000 perm   351 sec   (2023 perm/sec)   p_kst 3.577465e-04   p_cons 8.860845e-02   p_joint 3.577465e-04

Joint ci ratio: 2.449563e-01	ci left: 3.120335e-04	ci right 4.004013e-04	k: 255	n:720000
Cons ci ratio: 1.482059e-02	ci left: 8.790306e-02	ci right 8.921692e-02	k: 63762	n:720000
KS ci ratio: 2.449563e-01	ci left: 3.120335e-04	ci right 4.004013e-04	k: 255	n:720000
DIS3   720000 perm   358 sec   (2009 perm/sec)   p_kst 3.541667e-04   p_cons 8.855833e-02   p_joint 3.541667e-04

Joint ci ratio: 2.440052e-01	ci left: 3.103309e-04	ci right 3.978236e-04	k: 257	n:730000
Cons ci ratio: 1.471344e-02	ci left: 8.796547e-02	ci right 8.927068e-02	k: 64690	n:730000
KS ci ratio: 2.440052e-01	ci left: 3.103309e-04	ci right 3.978236e-04	k: 257	n:730000
DIS3   730000 perm   366 sec   (1992 perm/sec)   p_kst 3.520548e-04   p_cons 8.861644e-02   p_joint 3.520548e-04

Joint ci ratio: 2.425990e-01	ci left: 3.099442e-04	ci right 3.967483e-04	k: 260	n:740000
Cons ci ratio: 1.461138e-02	ci left: 8.799524e-02	ci right 8.929176e-02	k: 65595	n:740000
KS ci ratio: 2.425990e-01	ci left: 3.099442e-04	ci right 3.967483e-04	k: 260	n:740000
DIS3   740000 perm   374 sec   (1977 perm/sec)   p_kst 3.513514e-04   p_cons 8.864189e-02   p_joint 3.513514e-04

Joint ci ratio: 2.412167e-01	ci left: 3.095691e-04	ci right 3.957004e-04	k: 263	n:750000
Cons ci ratio: 1.451813e-02	ci left: 8.794983e-02	ci right 8.923735e-02	k: 66444	n:750000
KS ci ratio: 2.412167e-01	ci left: 3.095691e-04	ci right 3.957004e-04	k: 263	n:750000
DIS3   750000 perm   382 sec   (1962 perm/sec)   p_kst 3.506667e-04   p_cons 8.859200e-02   p_joint 3.506667e-04

Joint ci ratio: 2.403084e-01	ci left: 3.079686e-04	ci right 3.932839e-04	k: 265	n:760000
Cons ci ratio: 1.442512e-02	ci left: 8.792270e-02	ci right 8.920150e-02	k: 67306	n:760000
KS ci ratio: 2.403084e-01	ci left: 3.079686e-04	ci right 3.932839e-04	k: 265	n:760000
DIS3   760000 perm   390 sec   (1947 perm/sec)   p_kst 3.486842e-04   p_cons 8.856053e-02   p_joint 3.486842e-04

Joint ci ratio: 2.372070e-01	ci left: 3.125163e-04	ci right 3.978099e-04	k: 272	n:770000
Cons ci ratio: 1.432395e-02	ci left: 8.800761e-02	ci right 8.927860e-02	k: 68254	n:770000
KS ci ratio: 2.372070e-01	ci left: 3.125163e-04	ci right 3.978099e-04	k: 272	n:770000
DIS3   770000 perm   399 sec   (1932 perm/sec)   p_kst 3.532468e-04   p_cons 8.864156e-02   p_joint 3.532468e-04

Joint ci ratio: 2.338053e-01	ci left: 3.181610e-04	ci right 4.035700e-04	k: 280	n:780000
Cons ci ratio: 1.422985e-02	ci left: 8.803416e-02	ci right 8.929710e-02	k: 69158	n:780000
KS ci ratio: 2.338053e-01	ci left: 3.181610e-04	ci right 4.035700e-04	k: 280	n:780000
DIS3   780000 perm   407 sec   (1917 perm/sec)   p_kst 3.589744e-04   p_cons 8.866410e-02   p_joint 3.589744e-04

Joint ci ratio: 2.325672e-01	ci left: 3.177093e-04	ci right 4.024805e-04	k: 283	n:790000
Cons ci ratio: 1.414068e-02	ci left: 8.802472e-02	ci right 8.927956e-02	k: 70034	n:790000
KS ci ratio: 2.325672e-01	ci left: 3.177093e-04	ci right 4.024805e-04	k: 283	n:790000
DIS3   790000 perm   415 sec   (1902 perm/sec)   p_kst 3.582278e-04   p_cons 8.865063e-02   p_joint 3.582278e-04

Joint ci ratio: 2.321593e-01	ci left: 3.149151e-04	ci right 3.987722e-04	k: 284	n:800000
Cons ci ratio: 1.405720e-02	ci left: 8.796945e-02	ci right 8.921603e-02	k: 70873	n:800000
KS ci ratio: 2.321593e-01	ci left: 3.149151e-04	ci right 3.987722e-04	k: 284	n:800000
DIS3   800000 perm   424 sec   (1888 perm/sec)   p_kst 3.550000e-04   p_cons 8.859125e-02   p_joint 3.550000e-04

Joint ci ratio: 2.305470e-01	ci left: 3.156794e-04	ci right 3.990730e-04	k: 288	n:810000
Cons ci ratio: 1.396449e-02	ci left: 8.803863e-02	ci right 8.927790e-02	k: 71812	n:810000
KS ci ratio: 2.305470e-01	ci left: 3.156794e-04	ci right 3.990730e-04	k: 288	n:810000
DIS3   810000 perm   432 sec   (1873 perm/sec)   p_kst 3.555556e-04   p_cons 8.865679e-02   p_joint 3.555556e-04

Joint ci ratio: 2.289678e-01	ci left: 3.164269e-04	ci right 3.993646e-04	k: 292	n:820000
Cons ci ratio: 1.387945e-02	ci left: 8.803807e-02	ci right 8.926972e-02	k: 72695	n:820000
KS ci ratio: 2.289678e-01	ci left: 3.164269e-04	ci right 3.993646e-04	k: 292	n:820000
DIS3   820000 perm   441 sec   (1860 perm/sec)   p_kst 3.560976e-04   p_cons 8.865244e-02   p_joint 3.560976e-04

Joint ci ratio: 4.824992e-01	ci left: 6.044102e-05	ci right 9.981560e-05	k: 65	n:830000
Cons ci ratio: 1.379317e-02	ci left: 8.806997e-02	ci right 8.929435e-02	k: 73605	n:830000
KS ci ratio: 2.266585e-01	ci left: 3.194310e-04	ci right 4.021936e-04	k: 298	n:830000
DIS3   830000 perm   450 sec   (1846 perm/sec)   p_kst 3.590361e-04   p_cons 8.868072e-02   p_joint 7.831325e-05

Joint ci ratio: 4.788848e-01	ci left: 6.076764e-05	ci right 9.996105e-05	k: 66	n:840000
Cons ci ratio: 1.371141e-02	ci left: 8.806672e-02	ci right 8.928374e-02	k: 74486	n:840000
KS ci ratio: 2.251574e-01	ci left: 3.201207e-04	ci right 4.024365e-04	k: 302	n:840000
DIS3   840000 perm   458 sec   (1833 perm/sec)   p_kst 3.595238e-04   p_cons 8.867381e-02   p_joint 7.857143e-05

Joint ci ratio: 4.718931e-01	ci left: 6.212365e-05	ci right 1.014180e-04	k: 68	n:850000
Cons ci ratio: 1.362554e-02	ci left: 8.812924e-02	ci right 8.933944e-02	k: 75423	n:850000
KS ci ratio: 2.226003e-01	ci left: 3.241282e-04	ci right 4.063982e-04	k: 309	n:850000
DIS3   850000 perm   467 sec   (1819 perm/sec)   p_kst 3.635294e-04   p_cons 8.873294e-02   p_joint 8.000000e-05

Joint ci ratio: 2.204766e-01	ci left: 3.269489e-04	ci right 4.090358e-04	k: 315	n:860000
Cons ci ratio: 1.354223e-02	ci left: 8.817875e-02	ci right 8.938216e-02	k: 76350	n:860000
KS ci ratio: 2.204766e-01	ci left: 3.269489e-04	ci right 4.090358e-04	k: 315	n:860000
DIS3   860000 perm   476 sec   (1806 perm/sec)   p_kst 3.662791e-04   p_cons 8.877907e-02   p_joint 3.662791e-04

Joint ci ratio: 2.190942e-01	ci left: 3.275355e-04	ci right 4.091847e-04	k: 319	n:870000
Cons ci ratio: 1.346368e-02	ci left: 8.818817e-02	ci right 8.938468e-02	k: 77243	n:870000
KS ci ratio: 2.190942e-01	ci left: 3.275355e-04	ci right 4.091847e-04	k: 319	n:870000
DIS3   870000 perm   485 sec   (1792 perm/sec)   p_kst 3.666667e-04   p_cons 8.878506e-02   p_joint 3.666667e-04

Joint ci ratio: 2.184130e-01	ci left: 3.259617e-04	ci right 4.069319e-04	k: 321	n:880000
Cons ci ratio: 1.338958e-02	ci left: 8.816002e-02	ci right 8.934951e-02	k: 78103	n:880000
KS ci ratio: 2.184130e-01	ci left: 3.259617e-04	ci right 4.069319e-04	k: 321	n:880000
DIS3   880000 perm   495 sec   (1779 perm/sec)   p_kst 3.647727e-04   p_cons 8.875341e-02   p_joint 3.647727e-04

Joint ci ratio: 2.174026e-01	ci left: 3.254860e-04	ci right 4.059142e-04	k: 324	n:890000
Cons ci ratio: 1.331614e-02	ci left: 8.813923e-02	ci right 8.932187e-02	k: 78969	n:890000
KS ci ratio: 2.174026e-01	ci left: 3.254860e-04	ci right 4.059142e-04	k: 324	n:890000
DIS3   890000 perm   504 sec   (1768 perm/sec)   p_kst 3.640449e-04   p_cons 8.872921e-02   p_joint 3.640449e-04

Joint ci ratio: 2.170693e-01	ci left: 3.229201e-04	ci right 4.025755e-04	k: 325	n:900000
Cons ci ratio: 1.323871e-02	ci left: 8.818207e-02	ci right 8.935835e-02	k: 79892	n:900000
KS ci ratio: 2.170693e-01	ci left: 3.229201e-04	ci right 4.025755e-04	k: 325	n:900000
DIS3   900000 perm   513 sec   (1755 perm/sec)   p_kst 3.611111e-04   p_cons 8.876889e-02   p_joint 3.611111e-04

Joint ci ratio: 2.157496e-01	ci left: 3.235289e-04	ci right 4.027851e-04	k: 329	n:910000
Cons ci ratio: 1.316395e-02	ci left: 8.820755e-02	ci right 8.937748e-02	k: 80800	n:910000
KS ci ratio: 2.157496e-01	ci left: 3.235289e-04	ci right 4.027851e-04	k: 329	n:910000
DIS3   910000 perm   522 sec   (1743 perm/sec)   p_kst 3.615385e-04   p_cons 8.879121e-02   p_joint 3.615385e-04

Joint ci ratio: 2.147757e-01	ci left: 3.230974e-04	ci right 4.018434e-04	k: 332	n:920000
Cons ci ratio: 1.309115e-02	ci left: 8.822383e-02	ci right 8.938746e-02	k: 81700	n:920000
KS ci ratio: 2.147757e-01	ci left: 3.230974e-04	ci right 4.018434e-04	k: 332	n:920000
DIS3   920000 perm   531 sec   (1731 perm/sec)   p_kst 3.608696e-04   p_cons 8.880435e-02   p_joint 3.608696e-04

Joint ci ratio: 2.134972e-01	ci left: 3.236936e-04	ci right 4.020539e-04	k: 336	n:930000
Cons ci ratio: 1.302101e-02	ci left: 8.822155e-02	ci right 8.937886e-02	k: 82583	n:930000
KS ci ratio: 2.134972e-01	ci left: 3.236936e-04	ci right 4.020539e-04	k: 336	n:930000
DIS3   930000 perm   541 sec   (1719 perm/sec)   p_kst 3.612903e-04   p_cons 8.879892e-02   p_joint 3.612903e-04

Joint ci ratio: 2.128667e-01	ci left: 3.222641e-04	ci right 4.000178e-04	k: 338	n:940000
Cons ci ratio: 1.295131e-02	ci left: 8.822782e-02	ci right 8.937897e-02	k: 83474	n:940000
KS ci ratio: 2.128667e-01	ci left: 3.222641e-04	ci right 4.000178e-04	k: 338	n:940000
DIS3   940000 perm   551 sec   (1707 perm/sec)   p_kst 3.595745e-04   p_cons 8.880213e-02   p_joint 3.595745e-04

Joint ci ratio: 2.119311e-01	ci left: 3.218618e-04	ci right 3.991328e-04	k: 341	n:950000
Cons ci ratio: 1.288314e-02	ci left: 8.822872e-02	ci right 8.937379e-02	k: 84360	n:950000
KS ci ratio: 2.119311e-01	ci left: 3.218618e-04	ci right 3.991328e-04	k: 341	n:950000
DIS3   950000 perm   560 sec   (1696 perm/sec)   p_kst 3.589474e-04   p_cons 8.880000e-02   p_joint 3.589474e-04

Joint ci ratio: 2.110077e-01	ci left: 3.214686e-04	ci right 3.982654e-04	k: 344	n:960000
Cons ci ratio: 1.282395e-02	ci left: 8.812991e-02	ci right 8.926840e-02	k: 85150	n:960000
KS ci ratio: 2.110077e-01	ci left: 3.214686e-04	ci right 3.982654e-04	k: 344	n:960000
DIS3   960000 perm   570 sec   (1684 perm/sec)   p_kst 3.583333e-04   p_cons 8.869792e-02   p_joint 3.583333e-04

Joint ci ratio: 2.091962e-01	ci left: 3.240146e-04	ci right 4.006701e-04	k: 350	n:970000
Cons ci ratio: 1.275304e-02	ci left: 8.819146e-02	ci right 8.932440e-02	k: 86094	n:970000
KS ci ratio: 2.091962e-01	ci left: 3.240146e-04	ci right 4.006701e-04	k: 350	n:970000
DIS3   970000 perm   580 sec   (1674 perm/sec)   p_kst 3.608247e-04   p_cons 8.875670e-02   p_joint 3.608247e-04

Joint ci ratio: 4.355373e-01	ci left: 6.473013e-05	ci right 1.015979e-04	k: 80	n:980000
Cons ci ratio: 1.268746e-02	ci left: 8.819886e-02	ci right 8.932602e-02	k: 86986	n:980000
KS ci ratio: 2.077217e-01	ci left: 3.255441e-04	ci right 4.019495e-04	k: 355	n:980000
DIS3   980000 perm   590 sec   (1662 perm/sec)   p_kst 3.622449e-04   p_cons 8.876122e-02   p_joint 8.163265e-05

Joint ci ratio: 4.355375e-01	ci left: 6.407629e-05	ci right 1.005717e-04	k: 80	n:990000
Cons ci ratio: 1.262090e-02	ci left: 8.823130e-02	ci right 8.935292e-02	k: 87903	n:990000
KS ci ratio: 2.068521e-01	ci left: 3.251288e-04	ci right 4.010768e-04	k: 358	n:990000
DIS3   990000 perm   600 sec   (1651 perm/sec)   p_kst 3.616162e-04   p_cons 8.879091e-02   p_joint 8.080808e-05

Joint ci ratio: 4.355377e-01	ci left: 6.343552e-05	ci right 9.956595e-05	k: 80	n:1000000
Cons ci ratio: 1.255802e-02	ci left: 8.822921e-02	ci right 8.934517e-02	k: 88786	n:1000000
KS ci ratio: 2.059932e-01	ci left: 3.247224e-04	ci right 4.002209e-04	k: 361	n:1000000
DIS3   1000000 perm   610 sec   (1640 perm/sec)   p_kst 3.610000e-04   p_cons 8.878600e-02   p_joint 8.000000e-05

Joint ci ratio: 4.355379e-01	ci left: 6.280744e-05	ci right 9.858016e-05	k: 80	n:1010000
Cons ci ratio: 1.249630e-02	ci left: 8.822421e-02	ci right 8.933459e-02	k: 89666	n:1010000
KS ci ratio: 2.054267e-01	ci left: 3.233855e-04	ci right 3.983404e-04	k: 363	n:1010000
DIS3   1010000 perm   619 sec   (1630 perm/sec)   p_kst 3.594059e-04   p_cons 8.877822e-02   p_joint 7.920792e-05

Joint ci ratio: 4.355380e-01	ci left: 6.219168e-05	ci right 9.761370e-05	k: 80	n:1020000
Cons ci ratio: 1.243322e-02	ci left: 8.824865e-02	ci right 8.935369e-02	k: 90576	n:1020000
KS ci ratio: 2.048648e-01	ci left: 3.220751e-04	ci right 3.964966e-04	k: 365	n:1020000
DIS3   1020000 perm   630 sec   (1620 perm/sec)   p_kst 3.578431e-04   p_cons 8.880000e-02   p_joint 7.843137e-05

Joint ci ratio: 4.355382e-01	ci left: 6.158787e-05	ci right 9.666600e-05	k: 80	n:1030000
Cons ci ratio: 1.237086e-02	ci left: 8.827553e-02	ci right 8.937532e-02	k: 91489	n:1030000
KS ci ratio: 2.043075e-01	ci left: 3.207904e-04	ci right 3.946882e-04	k: 367	n:1030000
DIS3   1030000 perm   640 sec   (1610 perm/sec)   p_kst 3.563107e-04   p_cons 8.882427e-02   p_joint 7.766990e-05

Joint ci ratio: 4.328743e-01	ci left: 6.185209e-05	ci right 9.680255e-05	k: 81	n:1040000
Cons ci ratio: 1.231448e-02	ci left: 8.823575e-02	ci right 8.933000e-02	k: 92333	n:1040000
KS ci ratio: 2.037547e-01	ci left: 3.195307e-04	ci right 3.929143e-04	k: 369	n:1040000
DIS3   1040000 perm   650 sec   (1600 perm/sec)   p_kst 3.548077e-04   p_cons 8.878173e-02   p_joint 7.788462e-05

Joint ci ratio: 4.302587e-01	ci left: 6.211193e-05	ci right 9.693587e-05	k: 82	n:1050000
Cons ci ratio: 1.226096e-02	ci left: 8.816920e-02	ci right 8.925783e-02	k: 93148	n:1050000
KS ci ratio: 2.029338e-01	ci left: 3.191992e-04	ci right 3.921747e-04	k: 372	n:1050000
DIS3   1050000 perm   660 sec   (1591 perm/sec)   p_kst 3.542857e-04   p_cons 8.871238e-02   p_joint 7.809524e-05

Joint ci ratio: 4.276899e-01	ci left: 6.236748e-05	ci right 9.706606e-05	k: 83	n:1060000
Cons ci ratio: 1.220171e-02	ci left: 8.818858e-02	ci right 8.927216e-02	k: 94053	n:1060000
KS ci ratio: 2.015870e-01	ci left: 3.206660e-04	ci right 3.934305e-04	k: 377	n:1060000
DIS3   1060000 perm   670 sec   (1581 perm/sec)   p_kst 3.556604e-04   p_cons 8.872925e-02   p_joint 7.830189e-05

Joint ci ratio: 1.994867e-01	ci left: 3.247705e-04	ci right 3.976050e-04	k: 385	n:1070000
Cons ci ratio: 1.214521e-02	ci left: 8.818245e-02	ci right 8.926090e-02	k: 94931	n:1070000
KS ci ratio: 1.994867e-01	ci left: 3.247705e-04	ci right 3.976050e-04	k: 385	n:1070000
DIS3   1070000 perm   681 sec   (1571 perm/sec)   p_kst 3.598131e-04   p_cons 8.872056e-02   p_joint 3.598131e-04

Joint ci ratio: 1.987160e-01	ci left: 3.244026e-04	ci right 3.968396e-04	k: 388	n:1080000
Cons ci ratio: 1.208707e-02	ci left: 8.820876e-02	ci right 8.928233e-02	k: 95844	n:1080000
KS ci ratio: 1.987160e-01	ci left: 3.244026e-04	ci right 3.968396e-04	k: 388	n:1080000
DIS3   1080000 perm   692 sec   (1561 perm/sec)   p_kst 3.592593e-04   p_cons 8.874444e-02   p_joint 3.592593e-04

Joint ci ratio: 1.974510e-01	ci left: 3.257861e-04	ci right 3.980132e-04	k: 393	n:1090000
Cons ci ratio: 1.203276e-02	ci left: 8.819435e-02	ci right 8.926289e-02	k: 96713	n:1090000
KS ci ratio: 1.974510e-01	ci left: 3.257861e-04	ci right 3.980132e-04	k: 393	n:1090000
DIS3   1090000 perm   703 sec   (1551 perm/sec)   p_kst 3.605505e-04   p_cons 8.872752e-02   p_joint 3.605505e-04

Joint ci ratio: 1.962098e-01	ci left: 3.271459e-04	ci right 3.991640e-04	k: 398	n:1100000
Cons ci ratio: 1.197755e-02	ci left: 8.820196e-02	ci right 8.926566e-02	k: 97606	n:1100000
KS ci ratio: 1.962098e-01	ci left: 3.271459e-04	ci right 3.991640e-04	k: 398	n:1100000
DIS3   1100000 perm   714 sec   (1540 perm/sec)   p_kst 3.618182e-04   p_cons 8.873273e-02   p_joint 3.618182e-04

Joint ci ratio: 1.947507e-01	ci left: 3.293396e-04	ci right 4.012375e-04	k: 404	n:1110000
Cons ci ratio: 1.192310e-02	ci left: 8.820945e-02	ci right 8.926837e-02	k: 98499	n:1110000
KS ci ratio: 1.947507e-01	ci left: 3.293396e-04	ci right 4.012375e-04	k: 404	n:1110000
DIS3   1110000 perm   725 sec   (1531 perm/sec)   p_kst 3.639640e-04   p_cons 8.873784e-02   p_joint 3.639640e-04

Joint ci ratio: 1.935595e-01	ci left: 3.306463e-04	ci right 4.023360e-04	k: 409	n:1120000
Cons ci ratio: 1.186893e-02	ci left: 8.822305e-02	ci right 8.927729e-02	k: 99399	n:1120000
KS ci ratio: 1.935595e-01	ci left: 3.306463e-04	ci right 4.023360e-04	k: 409	n:1120000
DIS3   1120000 perm   736 sec   (1522 perm/sec)   p_kst 3.651786e-04   p_cons 8.874911e-02   p_joint 3.651786e-04

Joint ci ratio: 1.928553e-01	ci left: 3.302467e-04	ci right 4.015587e-04	k: 412	n:1130000
Cons ci ratio: 1.181671e-02	ci left: 8.821965e-02	ci right 8.926918e-02	k: 100280	n:1130000
KS ci ratio: 1.928553e-01	ci left: 3.302467e-04	ci right 4.015587e-04	k: 412	n:1130000
DIS3   1130000 perm   747 sec   (1513 perm/sec)   p_kst 3.646018e-04   p_cons 8.874336e-02   p_joint 3.646018e-04

Joint ci ratio: 1.921587e-01	ci left: 3.298546e-04	ci right 4.007945e-04	k: 415	n:1140000
Cons ci ratio: 1.176544e-02	ci left: 8.821283e-02	ci right 8.925769e-02	k: 101157	n:1140000
KS ci ratio: 1.921587e-01	ci left: 3.298546e-04	ci right 4.007945e-04	k: 415	n:1140000
DIS3   1140000 perm   758 sec   (1504 perm/sec)   p_kst 3.640351e-04   p_cons 8.873421e-02   p_joint 3.640351e-04

Joint ci ratio: 1.910141e-01	ci left: 3.311256e-04	ci right 4.018654e-04	k: 420	n:1150000
Cons ci ratio: 1.171363e-02	ci left: 8.822260e-02	ci right 8.926295e-02	k: 102053	n:1150000
KS ci ratio: 1.910141e-01	ci left: 3.311256e-04	ci right 4.018654e-04	k: 420	n:1150000
DIS3   1150000 perm   769 sec   (1495 perm/sec)   p_kst 3.652174e-04   p_cons 8.874174e-02   p_joint 3.652174e-04

Joint ci ratio: 1.901130e-01	ci left: 3.315548e-04	ci right 4.020137e-04	k: 424	n:1160000
Cons ci ratio: 1.166299e-02	ci left: 8.822534e-02	ci right 8.926119e-02	k: 102941	n:1160000
KS ci ratio: 1.901130e-01	ci left: 3.315548e-04	ci right 4.020137e-04	k: 424	n:1160000
DIS3   1160000 perm   780 sec   (1486 perm/sec)   p_kst 3.655172e-04   p_cons 8.874224e-02   p_joint 3.655172e-04

Joint ci ratio: 1.894456e-01	ci left: 3.311633e-04	ci right 4.012634e-04	k: 427	n:1170000
Cons ci ratio: 1.161240e-02	ci left: 8.823657e-02	ci right 8.926803e-02	k: 103839	n:1170000
KS ci ratio: 1.894456e-01	ci left: 3.311633e-04	ci right 4.012634e-04	k: 427	n:1170000
DIS3   1170000 perm   792 sec   (1478 perm/sec)   p_kst 3.649573e-04   p_cons 8.875128e-02   p_joint 3.649573e-04

Joint ci ratio: 1.885665e-01	ci left: 3.315863e-04	ci right 4.014129e-04	k: 431	n:1180000
Cons ci ratio: 1.156512e-02	ci left: 8.821043e-02	ci right 8.923735e-02	k: 104693	n:1180000
KS ci ratio: 1.885665e-01	ci left: 3.315863e-04	ci right 4.014129e-04	k: 431	n:1180000
DIS3   1180000 perm   804 sec   (1468 perm/sec)   p_kst 3.652542e-04   p_cons 8.872288e-02   p_joint 3.652542e-04

Joint ci ratio: 1.881316e-01	ci left: 3.304012e-04	ci right 3.997996e-04	k: 433	n:1190000
Cons ci ratio: 1.151512e-02	ci left: 8.823083e-02	ci right 8.925352e-02	k: 105602	n:1190000
KS ci ratio: 1.881316e-01	ci left: 3.304012e-04	ci right 3.997996e-04	k: 433	n:1190000
DIS3   1190000 perm   815 sec   (1460 perm/sec)   p_kst 3.638655e-04   p_cons 8.874118e-02   p_joint 3.638655e-04

Joint ci ratio: 1.857913e-01	ci left: 3.363856e-04	ci right 4.060630e-04	k: 444	n:1200000
Cons ci ratio: 1.146683e-02	ci left: 8.823594e-02	ci right 8.925438e-02	k: 106493	n:1200000
KS ci ratio: 1.857913e-01	ci left: 3.363856e-04	ci right 4.060630e-04	k: 444	n:1200000
DIS3   1200000 perm   827 sec   (1451 perm/sec)   p_kst 3.700000e-04   p_cons 8.874417e-02   p_joint 3.700000e-04

Joint ci ratio: 1.845511e-01	ci left: 3.383345e-04	ci right 4.078953e-04	k: 450	n:1210000
Cons ci ratio: 1.141914e-02	ci left: 8.824098e-02	ci right 8.925521e-02	k: 107384	n:1210000
KS ci ratio: 1.845511e-01	ci left: 3.383345e-04	ci right 4.078953e-04	k: 450	n:1210000
DIS3   1210000 perm   839 sec   (1443 perm/sec)   p_kst 3.719008e-04   p_cons 8.874711e-02   p_joint 3.719008e-04

Joint ci ratio: 1.839404e-01	ci left: 3.379068e-04	ci right 4.071242e-04	k: 453	n:1220000
Cons ci ratio: 1.137146e-02	ci left: 8.825411e-02	ci right 8.926423e-02	k: 108285	n:1220000
KS ci ratio: 1.839404e-01	ci left: 3.379068e-04	ci right 4.071242e-04	k: 453	n:1220000
DIS3   1220000 perm   851 sec   (1434 perm/sec)   p_kst 3.713115e-04   p_cons 8.875820e-02   p_joint 3.713115e-04

Joint ci ratio: 1.829357e-01	ci left: 3.390380e-04	ci right 4.080657e-04	k: 458	n:1230000
Cons ci ratio: 1.132228e-02	ci left: 8.829705e-02	ci right 8.930326e-02	k: 109223	n:1230000
KS ci ratio: 1.829357e-01	ci left: 3.390380e-04	ci right 4.080657e-04	k: 458	n:1230000
DIS3   1230000 perm   863 sec   (1425 perm/sec)   p_kst 3.723577e-04   p_cons 8.879919e-02   p_joint 3.723577e-04

Joint ci ratio: 1.827370e-01	ci left: 3.370733e-04	ci right 4.056182e-04	k: 459	n:1240000
Cons ci ratio: 1.127805e-02	ci left: 8.827737e-02	ci right 8.927939e-02	k: 110084	n:1240000
KS ci ratio: 1.827370e-01	ci left: 3.370733e-04	ci right 4.056182e-04	k: 459	n:1240000
DIS3   1240000 perm   875 sec   (1417 perm/sec)   p_kst 3.701613e-04   p_cons 8.877742e-02   p_joint 3.701613e-04

Joint ci ratio: 1.823411e-01	ci left: 3.359036e-04	ci right 4.040463e-04	k: 461	n:1250000
Cons ci ratio: 1.123372e-02	ci left: 8.826678e-02	ci right 8.926473e-02	k: 110956	n:1250000
KS ci ratio: 1.823411e-01	ci left: 3.359036e-04	ci right 4.040463e-04	k: 461	n:1250000
DIS3   1250000 perm   887 sec   (1409 perm/sec)   p_kst 3.688000e-04   p_cons 8.876480e-02   p_joint 3.688000e-04

Joint ci ratio: 1.817520e-01	ci left: 3.355102e-04	ci right 4.033290e-04	k: 464	n:1260000
Cons ci ratio: 1.118810e-02	ci left: 8.828249e-02	ci right 8.927654e-02	k: 111861	n:1260000
KS ci ratio: 1.817520e-01	ci left: 3.355102e-04	ci right 4.033290e-04	k: 464	n:1260000
DIS3   1260000 perm   899 sec   (1401 perm/sec)   p_kst 3.682540e-04   p_cons 8.877857e-02   p_joint 3.682540e-04

Joint ci ratio: 1.813625e-01	ci left: 3.343716e-04	ci right 4.017995e-04	k: 466	n:1270000
Cons ci ratio: 1.114450e-02	ci left: 8.827676e-02	ci right 8.926684e-02	k: 112739	n:1270000
KS ci ratio: 1.813625e-01	ci left: 3.343716e-04	ci right 4.017995e-04	k: 466	n:1270000
DIS3   1270000 perm   912 sec   (1393 perm/sec)   p_kst 3.669291e-04   p_cons 8.877087e-02   p_joint 3.669291e-04

Joint ci ratio: 1.803993e-01	ci left: 3.354887e-04	ci right 4.027433e-04	k: 471	n:1280000
Cons ci ratio: 1.110167e-02	ci left: 8.826723e-02	ci right 8.925338e-02	k: 113612	n:1280000
KS ci ratio: 1.803993e-01	ci left: 3.354887e-04	ci right 4.027433e-04	k: 471	n:1280000
DIS3   1280000 perm   924 sec   (1386 perm/sec)   p_kst 3.679688e-04   p_cons 8.875938e-02   p_joint 3.679688e-04

Joint ci ratio: 1.788893e-01	ci left: 3.388108e-04	ci right 4.061013e-04	k: 479	n:1290000
Cons ci ratio: 1.105732e-02	ci left: 8.828724e-02	ci right 8.926964e-02	k: 114523	n:1290000
KS ci ratio: 1.788893e-01	ci left: 3.388108e-04	ci right 4.061013e-04	k: 479	n:1290000
DIS3   1290000 perm   936 sec   (1378 perm/sec)   p_kst 3.713178e-04   p_cons 8.877752e-02   p_joint 3.713178e-04

Joint ci ratio: 1.783330e-01	ci left: 3.384091e-04	ci right 4.053882e-04	k: 482	n:1300000
Cons ci ratio: 1.101501e-02	ci left: 8.828470e-02	ci right 8.926329e-02	k: 115405	n:1300000
KS ci ratio: 1.783330e-01	ci left: 3.384091e-04	ci right 4.053882e-04	k: 482	n:1300000
DIS3   1300000 perm   948 sec   (1371 perm/sec)   p_kst 3.707692e-04   p_cons 8.877308e-02   p_joint 3.707692e-04

Joint ci ratio: 1.781488e-01	ci left: 3.365550e-04	ci right 4.030911e-04	k: 483	n:1310000
Cons ci ratio: 1.097210e-02	ci left: 8.829819e-02	ci right 8.927309e-02	k: 116308	n:1310000
KS ci ratio: 1.781488e-01	ci left: 3.365550e-04	ci right 4.030911e-04	k: 483	n:1310000
DIS3   1310000 perm   961 sec   (1363 perm/sec)   p_kst 3.687023e-04   p_cons 8.878473e-02   p_joint 3.687023e-04

Joint ci ratio: 1.775993e-01	ci left: 3.361769e-04	ci right 4.024112e-04	k: 486	n:1320000
Cons ci ratio: 1.092983e-02	ci left: 8.830922e-02	ci right 8.928047e-02	k: 117208	n:1320000
KS ci ratio: 1.775993e-01	ci left: 3.361769e-04	ci right 4.024112e-04	k: 486	n:1320000
DIS3   1320000 perm   974 sec   (1356 perm/sec)   p_kst 3.681818e-04   p_cons 8.879394e-02   p_joint 3.681818e-04

Joint ci ratio: 1.766945e-01	ci left: 3.372420e-04	ci right 4.033114e-04	k: 491	n:1330000
Cons ci ratio: 1.088978e-02	ci left: 8.829459e-02	ci right 8.926209e-02	k: 118074	n:1330000
KS ci ratio: 1.766945e-01	ci left: 3.372420e-04	ci right 4.033114e-04	k: 491	n:1330000
DIS3   1330000 perm   986 sec   (1348 perm/sec)   p_kst 3.691729e-04   p_cons 8.877744e-02   p_joint 3.691729e-04

Joint ci ratio: 1.756267e-01	ci left: 3.390055e-04	ci right 4.049765e-04	k: 497	n:1340000
Cons ci ratio: 1.084966e-02	ci left: 8.828762e-02	ci right 8.925147e-02	k: 118950	n:1340000
KS ci ratio: 1.756267e-01	ci left: 3.390055e-04	ci right 4.049765e-04	k: 497	n:1340000
DIS3   1340000 perm   999 sec   (1341 perm/sec)   p_kst 3.708955e-04   p_cons 8.876866e-02   p_joint 3.708955e-04

Joint ci ratio: 1.749256e-01	ci left: 3.393273e-04	ci right 4.050694e-04	k: 501	n:1350000
Cons ci ratio: 1.080844e-02	ci left: 8.830368e-02	ci right 8.926401e-02	k: 119857	n:1350000
KS ci ratio: 1.749256e-01	ci left: 3.393273e-04	ci right 4.050694e-04	k: 501	n:1350000
DIS3   1350000 perm   1012 sec   (1334 perm/sec)   p_kst 3.711111e-04   p_cons 8.878296e-02   p_joint 3.711111e-04

Joint ci ratio: 1.738893e-01	ci left: 3.410515e-04	ci right 4.066951e-04	k: 507	n:1360000
Cons ci ratio: 1.076892e-02	ci left: 8.830117e-02	ci right 8.925794e-02	k: 120739	n:1360000
KS ci ratio: 1.738893e-01	ci left: 3.410515e-04	ci right 4.066951e-04	k: 507	n:1360000
DIS3   1360000 perm   1025 sec   (1327 perm/sec)   p_kst 3.727941e-04   p_cons 8.877868e-02   p_joint 3.727941e-04

Joint ci ratio: 1.732087e-01	ci left: 3.413549e-04	ci right 4.067729e-04	k: 511	n:1370000
Cons ci ratio: 1.072944e-02	ci left: 8.830452e-02	ci right 8.925780e-02	k: 121629	n:1370000
KS ci ratio: 1.732087e-01	ci left: 3.413549e-04	ci right 4.067729e-04	k: 511	n:1370000
DIS3   1370000 perm   1037 sec   (1321 perm/sec)   p_kst 3.729927e-04   p_cons 8.878029e-02   p_joint 3.729927e-04

Joint ci ratio: 1.723690e-01	ci left: 3.423479e-04	ci right 4.076050e-04	k: 516	n:1380000
Cons ci ratio: 1.068924e-02	ci left: 8.832518e-02	ci right 8.927509e-02	k: 122543	n:1380000
KS ci ratio: 1.723690e-01	ci left: 3.423479e-04	ci right 4.076050e-04	k: 516	n:1380000
DIS3   1380000 perm   1051 sec   (1313 perm/sec)   p_kst 3.739130e-04   p_cons 8.879928e-02   p_joint 3.739130e-04

Joint ci ratio: 1.715415e-01	ci left: 3.433273e-04	ci right 4.084244e-04	k: 521	n:1390000
Cons ci ratio: 1.064930e-02	ci left: 8.834843e-02	ci right 8.929501e-02	k: 123461	n:1390000
KS ci ratio: 1.715415e-01	ci left: 3.433273e-04	ci right 4.084244e-04	k: 521	n:1390000
DIS3   1390000 perm   1064 sec   (1306 perm/sec)   p_kst 3.748201e-04   p_cons 8.882086e-02   p_joint 3.748201e-04

Joint ci ratio: 1.705639e-01	ci left: 3.449772e-04	ci right 4.099760e-04	k: 527	n:1400000
Cons ci ratio: 1.061327e-02	ci left: 8.831861e-02	ci right 8.926166e-02	k: 124305	n:1400000
KS ci ratio: 1.705639e-01	ci left: 3.449772e-04	ci right 4.099760e-04	k: 527	n:1400000
DIS3   1400000 perm   1077 sec   (1300 perm/sec)   p_kst 3.764286e-04   p_cons 8.878929e-02   p_joint 3.764286e-04

Joint ci ratio: 1.699214e-01	ci left: 3.452466e-04	ci right 4.100260e-04	k: 531	n:1410000
Cons ci ratio: 1.057742e-02	ci left: 8.829206e-02	ci right 8.923162e-02	k: 125153	n:1410000
KS ci ratio: 1.699214e-01	ci left: 3.452466e-04	ci right 4.100260e-04	k: 531	n:1410000
DIS3   1410000 perm   1091 sec   (1293 perm/sec)   p_kst 3.765957e-04   p_cons 8.876099e-02   p_joint 3.765957e-04

Joint ci ratio: 1.692862e-01	ci left: 3.455126e-04	ci right 4.100749e-04	k: 535	n:1420000
Cons ci ratio: 1.053995e-02	ci left: 8.829609e-02	ci right 8.923235e-02	k: 126044	n:1420000
KS ci ratio: 1.692862e-01	ci left: 3.455126e-04	ci right 4.100749e-04	k: 535	n:1420000
DIS3   1420000 perm   1104 sec   (1286 perm/sec)   p_kst 3.767606e-04   p_cons 8.876338e-02   p_joint 3.767606e-04

Joint ci ratio: 1.688145e-01	ci left: 3.451055e-04	ci right 4.093938e-04	k: 538	n:1430000
Cons ci ratio: 1.050347e-02	ci left: 8.829101e-02	ci right 8.922395e-02	k: 126922	n:1430000
KS ci ratio: 1.688145e-01	ci left: 3.451055e-04	ci right 4.093938e-04	k: 538	n:1430000
DIS3   1430000 perm   1117 sec   (1280 perm/sec)   p_kst 3.762238e-04   p_cons 8.875664e-02   p_joint 3.762238e-04

Joint ci ratio: 1.678825e-01	ci left: 3.467001e-04	ci right 4.108928e-04	k: 544	n:1440000
Cons ci ratio: 1.046831e-02	ci left: 8.827145e-02	ci right 8.920104e-02	k: 127779	n:1440000
KS ci ratio: 1.678825e-01	ci left: 3.467001e-04	ci right 4.108928e-04	k: 544	n:1440000
DIS3   1440000 perm   1131 sec   (1273 perm/sec)   p_kst 3.777778e-04   p_cons 8.873542e-02   p_joint 3.777778e-04

Joint ci ratio: 1.672698e-01	ci left: 3.469520e-04	ci right 4.109333e-04	k: 548	n:1450000
Cons ci ratio: 1.043221e-02	ci left: 8.827212e-02	ci right 8.919849e-02	k: 128665	n:1450000
KS ci ratio: 1.672698e-01	ci left: 3.469520e-04	ci right 4.109333e-04	k: 548	n:1450000
DIS3   1450000 perm   1145 sec   (1267 perm/sec)   p_kst 3.779310e-04   p_cons 8.873448e-02   p_joint 3.779310e-04

Joint ci ratio: 1.666637e-01	ci left: 3.472009e-04	ci right 4.109728e-04	k: 552	n:1460000
Cons ci ratio: 1.039587e-02	ci left: 8.828235e-02	ci right 8.920558e-02	k: 129565	n:1460000
KS ci ratio: 1.666637e-01	ci left: 3.472009e-04	ci right 4.109728e-04	k: 552	n:1460000
DIS3   1460000 perm   1158 sec   (1261 perm/sec)   p_kst 3.780822e-04   p_cons 8.874315e-02   p_joint 3.780822e-04

Joint ci ratio: 1.659153e-01	ci left: 3.480988e-04	ci right 4.117198e-04	k: 557	n:1470000
Cons ci ratio: 1.035863e-02	ci left: 8.831213e-02	ci right 8.923235e-02	k: 130494	n:1470000
KS ci ratio: 1.659153e-01	ci left: 3.480988e-04	ci right 4.117198e-04	k: 557	n:1470000
DIS3   1470000 perm   1172 sec   (1255 perm/sec)   p_kst 3.789116e-04   p_cons 8.877143e-02   p_joint 3.789116e-04

Joint ci ratio: 1.648841e-01	ci left: 3.502808e-04	ci right 4.138632e-04	k: 564	n:1480000
Cons ci ratio: 1.032490e-02	ci left: 8.829298e-02	ci right 8.920998e-02	k: 131351	n:1480000
KS ci ratio: 1.648841e-01	ci left: 3.502808e-04	ci right 4.138632e-04	k: 564	n:1480000
DIS3   1480000 perm   1185 sec   (1249 perm/sec)   p_kst 3.810811e-04   p_cons 8.875068e-02   p_joint 3.810811e-04

Joint ci ratio: 1.640154e-01	ci left: 3.517910e-04	ci right 4.152780e-04	k: 570	n:1490000
Cons ci ratio: 1.029005e-02	ci left: 8.829685e-02	ci right 8.921079e-02	k: 132242	n:1490000
KS ci ratio: 1.640154e-01	ci left: 3.517910e-04	ci right 4.152780e-04	k: 570	n:1490000
DIS3   1490000 perm   1199 sec   (1243 perm/sec)   p_kst 3.825503e-04   p_cons 8.875302e-02   p_joint 3.825503e-04

Joint ci ratio: 1.638721e-01	ci left: 3.500850e-04	ci right 4.132035e-04	k: 571	n:1500000
Cons ci ratio: 1.025491e-02	ci left: 8.831066e-02	ci right 8.922159e-02	k: 133148	n:1500000
KS ci ratio: 1.638721e-01	ci left: 3.500850e-04	ci right 4.132035e-04	k: 571	n:1500000
DIS3   1500000 perm   1213 sec   (1237 perm/sec)   p_kst 3.806667e-04   p_cons 8.876533e-02   p_joint 3.806667e-04

Joint ci ratio: 1.627378e-01	ci left: 3.528481e-04	ci right 4.159814e-04	k: 579	n:1510000
Cons ci ratio: 1.022214e-02	ci left: 8.829257e-02	ci right 8.920039e-02	k: 134006	n:1510000
KS ci ratio: 1.627378e-01	ci left: 3.528481e-04	ci right 4.159814e-04	k: 579	n:1510000
DIS3   1510000 perm   1227 sec   (1231 perm/sec)   p_kst 3.834437e-04   p_cons 8.874570e-02   p_joint 3.834437e-04

Joint ci ratio: 1.614894e-01	ci left: 3.562077e-04	ci right 4.194056e-04	k: 588	n:1520000
Cons ci ratio: 1.018786e-02	ci left: 8.830361e-02	ci right 8.920848e-02	k: 134908	n:1520000
KS ci ratio: 1.614894e-01	ci left: 3.562077e-04	ci right 4.194056e-04	k: 588	n:1520000
DIS3   1520000 perm   1241 sec   (1225 perm/sec)   p_kst 3.868421e-04   p_cons 8.875526e-02   p_joint 3.868421e-04

Joint ci ratio: 1.609439e-01	ci left: 3.563884e-04	ci right 4.193842e-04	k: 592	n:1530000
Cons ci ratio: 1.015375e-02	ci left: 8.831712e-02	ci right 8.921908e-02	k: 135814	n:1530000
KS ci ratio: 1.609439e-01	ci left: 3.563884e-04	ci right 4.193842e-04	k: 592	n:1530000
DIS3   1530000 perm   1255 sec   (1219 perm/sec)   p_kst 3.869281e-04   p_cons 8.876732e-02   p_joint 3.869281e-04

Joint ci ratio: 1.602695e-01	ci left: 3.571905e-04	ci right 4.200380e-04	k: 597	n:1540000
Cons ci ratio: 1.012283e-02	ci left: 8.828510e-02	ci right 8.918398e-02	k: 136650	n:1540000
KS ci ratio: 1.602695e-01	ci left: 3.571905e-04	ci right 4.200380e-04	k: 597	n:1540000
DIS3   1540000 perm   1270 sec   (1213 perm/sec)   p_kst 3.876623e-04   p_cons 8.873377e-02   p_joint 3.876623e-04

Joint ci ratio: 1.598691e-01	ci left: 3.567440e-04	ci right 4.193411e-04	k: 600	n:1550000
Cons ci ratio: 1.008990e-02	ci left: 8.829020e-02	ci right 8.918618e-02	k: 137543	n:1550000
KS ci ratio: 1.598691e-01	ci left: 3.567440e-04	ci right 4.193411e-04	k: 600	n:1550000
DIS3   1550000 perm   1284 sec   (1207 perm/sec)   p_kst 3.870968e-04   p_cons 8.873742e-02   p_joint 3.870968e-04

Joint ci ratio: 1.594716e-01	ci left: 3.563034e-04	ci right 4.186528e-04	k: 603	n:1560000
Cons ci ratio: 1.005644e-02	ci left: 8.830866e-02	ci right 8.920184e-02	k: 138457	n:1560000
KS ci ratio: 1.594716e-01	ci left: 3.563034e-04	ci right 4.186528e-04	k: 603	n:1560000
DIS3   1560000 perm   1301 sec   (1199 perm/sec)   p_kst 3.865385e-04   p_cons 8.875449e-02   p_joint 3.865385e-04

Joint ci ratio: 1.585553e-01	ci left: 3.583151e-04	ci right 4.206221e-04	k: 610	n:1570000
Cons ci ratio: 1.002494e-02	ci left: 8.830084e-02	ci right 8.919113e-02	k: 139330	n:1570000
KS ci ratio: 1.585553e-01	ci left: 3.583151e-04	ci right 4.206221e-04	k: 610	n:1570000
DIS3   1570000 perm   1316 sec   (1193 perm/sec)   p_kst 3.885350e-04   p_cons 8.874522e-02   p_joint 3.885350e-04

Joint ci ratio: 1.581675e-01	ci left: 3.578708e-04	ci right 4.199339e-04	k: 613	n:1580000
Cons ci ratio: 9.994045e-03	ci left: 8.828807e-02	ci right 8.917547e-02	k: 140195	n:1580000
KS ci ratio: 1.581675e-01	ci left: 3.578708e-04	ci right 4.199339e-04	k: 613	n:1580000
DIS3   1580000 perm   1330 sec   (1188 perm/sec)   p_kst 3.879747e-04   p_cons 8.873101e-02   p_joint 3.879747e-04

Joint ci ratio: 1.575274e-01	ci left: 3.586405e-04	ci right 4.205615e-04	k: 618	n:1590000
Cons ci ratio: 9.962735e-03	ci left: 8.828675e-02	ci right 8.917135e-02	k: 141078	n:1590000
KS ci ratio: 1.575274e-01	ci left: 3.586405e-04	ci right 4.205615e-04	k: 618	n:1590000
DIS3   1590000 perm   1345 sec   (1182 perm/sec)   p_kst 3.886792e-04   p_cons 8.872830e-02   p_joint 3.886792e-04

Joint ci ratio: 1.571471e-01	ci left: 3.582002e-04	ci right 4.198818e-04	k: 621	n:1600000
Cons ci ratio: 9.931026e-03	ci left: 8.829669e-02	ci right 8.917855e-02	k: 141979	n:1600000
KS ci ratio: 1.571471e-01	ci left: 3.582002e-04	ci right 4.198818e-04	k: 621	n:1600000
DIS3   1600000 perm   1360 sec   (1176 perm/sec)   p_kst 3.881250e-04   p_cons 8.873688e-02   p_joint 3.881250e-04

Joint ci ratio: 1.566442e-01	ci left: 3.583623e-04	ci right 4.198557e-04	k: 625	n:1610000
Cons ci ratio: 9.900721e-03	ci left: 8.828853e-02	ci right 8.916761e-02	k: 142851	n:1610000
KS ci ratio: 1.566442e-01	ci left: 3.583623e-04	ci right 4.198557e-04	k: 625	n:1610000
DIS3   1610000 perm   1375 sec   (1171 perm/sec)   p_kst 3.881988e-04   p_cons 8.872733e-02   p_joint 3.881988e-04

Joint ci ratio: 1.561461e-01	ci left: 3.585227e-04	ci right 4.198297e-04	k: 629	n:1620000
Cons ci ratio: 9.870842e-03	ci left: 8.827802e-02	ci right 8.915432e-02	k: 143719	n:1620000
KS ci ratio: 1.561461e-01	ci left: 3.585227e-04	ci right 4.198297e-04	k: 629	n:1620000
DIS3   1620000 perm   1389 sec   (1166 perm/sec)   p_kst 3.882716e-04   p_cons 8.871543e-02   p_joint 3.882716e-04

Joint ci ratio: 1.550424e-01	ci left: 3.616297e-04	ci right 4.229903e-04	k: 638	n:1630000
Cons ci ratio: 9.839366e-03	ci left: 8.829824e-02	ci right 8.917193e-02	k: 144637	n:1630000
KS ci ratio: 1.550424e-01	ci left: 3.616297e-04	ci right 4.229903e-04	k: 638	n:1630000
DIS3   1630000 perm   1404 sec   (1161 perm/sec)   p_kst 3.914110e-04   p_cons 8.873436e-02   p_joint 3.914110e-04

Joint ci ratio: 1.544393e-01	ci left: 3.623554e-04	ci right 4.235778e-04	k: 643	n:1640000
Cons ci ratio: 9.809113e-03	ci left: 8.830301e-02	ci right 8.917405e-02	k: 145530	n:1640000
KS ci ratio: 1.544393e-01	ci left: 3.623554e-04	ci right 4.235778e-04	k: 643	n:1640000
DIS3   1640000 perm   1419 sec   (1156 perm/sec)   p_kst 3.920732e-04   p_cons 8.873780e-02   p_joint 3.920732e-04

Joint ci ratio: 1.539619e-01	ci left: 3.624900e-04	ci right 4.235284e-04	k: 647	n:1650000
Cons ci ratio: 9.778698e-03	ci left: 8.831499e-02	ci right 8.918343e-02	k: 146435	n:1650000
KS ci ratio: 1.539619e-01	ci left: 3.624900e-04	ci right 4.235284e-04	k: 647	n:1650000
DIS3   1650000 perm   1434 sec   (1151 perm/sec)   p_kst 3.921212e-04   p_cons 8.874848e-02   p_joint 3.921212e-04

Joint ci ratio: 1.536067e-01	ci left: 3.620440e-04	ci right 4.228537e-04	k: 650	n:1660000
Cons ci ratio: 9.749399e-03	ci left: 8.831300e-02	ci right 8.917880e-02	k: 147317	n:1660000
KS ci ratio: 1.536067e-01	ci left: 3.620440e-04	ci right 4.228537e-04	k: 650	n:1660000
DIS3   1660000 perm   1449 sec   (1145 perm/sec)   p_kst 3.915663e-04   p_cons 8.874518e-02   p_joint 3.915663e-04

Joint ci ratio: 1.529036e-01	ci left: 3.633311e-04	ci right 4.240522e-04	k: 656	n:1670000
Cons ci ratio: 9.721873e-03	ci left: 8.828594e-02	ci right 8.914902e-02	k: 148157	n:1670000
KS ci ratio: 1.529036e-01	ci left: 3.633311e-04	ci right 4.240522e-04	k: 656	n:1670000
DIS3   1670000 perm   1465 sec   (1140 perm/sec)   p_kst 3.928144e-04   p_cons 8.871677e-02   p_joint 3.928144e-04

Joint ci ratio: 1.526715e-01	ci left: 3.623134e-04	ci right 4.227640e-04	k: 658	n:1680000
Cons ci ratio: 9.695472e-03	ci left: 8.824436e-02	ci right 8.910468e-02	k: 148972	n:1680000
KS ci ratio: 1.526715e-01	ci left: 3.623134e-04	ci right 4.227640e-04	k: 658	n:1680000
DIS3   1680000 perm   1482 sec   (1134 perm/sec)   p_kst 3.916667e-04   p_cons 8.867381e-02   p_joint 3.916667e-04

Joint ci ratio: 1.520956e-01	ci left: 3.630153e-04	ci right 4.233337e-04	k: 663	n:1690000
Cons ci ratio: 9.666807e-03	ci left: 8.824461e-02	ci right 8.910237e-02	k: 149857	n:1690000
KS ci ratio: 1.520956e-01	ci left: 3.630153e-04	ci right 4.233337e-04	k: 663	n:1690000
DIS3   1690000 perm   1498 sec   (1128 perm/sec)   p_kst 3.923077e-04   p_cons 8.867278e-02   p_joint 3.923077e-04

Joint ci ratio: 1.517532e-01	ci left: 3.625775e-04	ci right 4.226753e-04	k: 666	n:1700000
Cons ci ratio: 9.639762e-03	ci left: 8.822196e-02	ci right 8.907709e-02	k: 150703	n:1700000
KS ci ratio: 1.517532e-01	ci left: 3.625775e-04	ci right 4.226753e-04	k: 666	n:1700000
DIS3   1700000 perm   1513 sec   (1123 perm/sec)   p_kst 3.917647e-04   p_cons 8.864882e-02   p_joint 3.917647e-04

Joint ci ratio: 1.514131e-01	ci left: 3.621450e-04	ci right 4.220244e-04	k: 669	n:1710000
Cons ci ratio: 9.612108e-03	ci left: 8.821359e-02	ci right 8.906617e-02	k: 151573	n:1710000
KS ci ratio: 1.514131e-01	ci left: 3.621450e-04	ci right 4.220244e-04	k: 669	n:1710000
DIS3   1710000 perm   1529 sec   (1118 perm/sec)   p_kst 3.912281e-04   p_cons 8.863918e-02   p_joint 3.912281e-04

Joint ci ratio: 1.510753e-01	ci left: 3.617177e-04	ci right 4.213809e-04	k: 672	n:1720000
Cons ci ratio: 9.583587e-03	ci left: 8.822388e-02	ci right 8.907402e-02	k: 152475	n:1720000
KS ci ratio: 1.510753e-01	ci left: 3.617177e-04	ci right 4.213809e-04	k: 672	n:1720000
DIS3   1720000 perm   1544 sec   (1114 perm/sec)   p_kst 3.906977e-04   p_cons 8.864826e-02   p_joint 3.906977e-04

Joint ci ratio: 1.506283e-01	ci left: 3.618517e-04	ci right 4.213445e-04	k: 676	n:1730000
Cons ci ratio: 9.555284e-03	ci left: 8.823463e-02	ci right 8.908235e-02	k: 153378	n:1730000
KS ci ratio: 1.506283e-01	ci left: 3.618517e-04	ci right 4.213445e-04	k: 676	n:1730000
DIS3   1730000 perm   1559 sec   (1109 perm/sec)   p_kst 3.907514e-04   p_cons 8.865780e-02   p_joint 3.907514e-04

Joint ci ratio: 1.501853e-01	ci left: 3.619844e-04	ci right 4.213083e-04	k: 680	n:1740000
Cons ci ratio: 9.526723e-03	ci left: 8.825387e-02	ci right 8.909922e-02	k: 154296	n:1740000
KS ci ratio: 1.501853e-01	ci left: 3.619844e-04	ci right 4.213083e-04	k: 680	n:1740000
DIS3   1740000 perm   1576 sec   (1104 perm/sec)   p_kst 3.908046e-04   p_cons 8.867586e-02   p_joint 3.908046e-04

Joint ci ratio: 1.495279e-01	ci left: 3.632160e-04	ci right 4.224578e-04	k: 686	n:1750000
Cons ci ratio: 9.498013e-03	ci left: 8.827973e-02	ci right 8.912277e-02	k: 155226	n:1750000
KS ci ratio: 1.495279e-01	ci left: 3.632160e-04	ci right 4.224578e-04	k: 686	n:1750000
DIS3   1750000 perm   1593 sec   (1098 perm/sec)   p_kst 3.920000e-04   p_cons 8.870057e-02   p_joint 3.920000e-04

Joint ci ratio: 1.488791e-01	ci left: 3.644341e-04	ci right 4.235938e-04	k: 692	n:1760000
Cons ci ratio: 9.470759e-03	ci left: 8.828489e-02	ci right 8.912555e-02	k: 156120	n:1760000
KS ci ratio: 1.488791e-01	ci left: 3.644341e-04	ci right 4.235938e-04	k: 692	n:1760000
DIS3   1760000 perm   1609 sec   (1094 perm/sec)   p_kst 3.931818e-04   p_cons 8.870455e-02   p_joint 3.931818e-04

Joint ci ratio: 1.482387e-01	ci left: 3.656390e-04	ci right 4.247163e-04	k: 698	n:1770000
Cons ci ratio: 9.445025e-03	ci left: 8.826801e-02	ci right 8.910621e-02	k: 156975	n:1770000
KS ci ratio: 1.482387e-01	ci left: 3.656390e-04	ci right 4.247163e-04	k: 698	n:1770000
DIS3   1770000 perm   1625 sec   (1089 perm/sec)   p_kst 3.943503e-04   p_cons 8.868644e-02   p_joint 3.943503e-04

Joint ci ratio: 1.476065e-01	ci left: 3.668309e-04	ci right 4.258257e-04	k: 704	n:1780000
Cons ci ratio: 9.417307e-03	ci left: 8.828889e-02	ci right 8.912481e-02	k: 157897	n:1780000
KS ci ratio: 1.476065e-01	ci left: 3.668309e-04	ci right 4.258257e-04	k: 704	n:1780000
DIS3   1780000 perm   1641 sec   (1084 perm/sec)   p_kst 3.955056e-04   p_cons 8.870618e-02   p_joint 3.955056e-04

Joint ci ratio: 1.473976e-01	ci left: 3.658576e-04	ci right 4.246053e-04	k: 706	n:1790000
Cons ci ratio: 9.390480e-03	ci left: 8.829838e-02	ci right 8.913200e-02	k: 158799	n:1790000
KS ci ratio: 1.473976e-01	ci left: 3.658576e-04	ci right 4.246053e-04	k: 706	n:1790000
DIS3   1790000 perm   1658 sec   (1080 perm/sec)   p_kst 3.944134e-04   p_cons 8.871453e-02   p_joint 3.944134e-04

Joint ci ratio: 1.468791e-01	ci left: 3.665006e-04	ci right 4.251264e-04	k: 711	n:1800000
Cons ci ratio: 9.365169e-03	ci left: 8.828560e-02	ci right 8.911684e-02	k: 159661	n:1800000
KS ci ratio: 1.468791e-01	ci left: 3.665006e-04	ci right 4.251264e-04	k: 711	n:1800000
DIS3   1800000 perm   1674 sec   (1075 perm/sec)   p_kst 3.950000e-04   p_cons 8.870056e-02   p_joint 3.950000e-04

Joint ci ratio: 1.467762e-01	ci left: 3.650079e-04	ci right 4.233504e-04	k: 712	n:1810000
Cons ci ratio: 9.340891e-03	ci left: 8.825862e-02	ci right 8.908744e-02	k: 160497	n:1810000
KS ci ratio: 1.467762e-01	ci left: 3.650079e-04	ci right 4.233504e-04	k: 712	n:1810000
DIS3   1810000 perm   1690 sec   (1071 perm/sec)   p_kst 3.933702e-04   p_cons 8.867238e-02   p_joint 3.933702e-04

Joint ci ratio: 1.465708e-01	ci left: 3.640609e-04	ci right 4.221635e-04	k: 714	n:1820000
Cons ci ratio: 9.315818e-03	ci left: 8.824895e-02	ci right 8.907544e-02	k: 161364	n:1820000
KS ci ratio: 1.465708e-01	ci left: 3.640609e-04	ci right 4.221635e-04	k: 714	n:1820000
DIS3   1820000 perm   1707 sec   (1066 perm/sec)   p_kst 3.923077e-04   p_cons 8.866154e-02   p_joint 3.923077e-04

Joint ci ratio: 1.457575e-01	ci left: 3.662833e-04	ci right 4.243879e-04	k: 722	n:1830000
Cons ci ratio: 9.288937e-03	ci left: 8.827428e-02	ci right 8.909861e-02	k: 162295	n:1830000
KS ci ratio: 1.457575e-01	ci left: 3.662833e-04	ci right 4.243879e-04	k: 722	n:1830000
DIS3   1830000 perm   1723 sec   (1062 perm/sec)   p_kst 3.945355e-04   p_cons 8.868579e-02   p_joint 3.945355e-04

Joint ci ratio: 1.453560e-01	ci left: 3.663874e-04	ci right 4.243345e-04	k: 726	n:1840000
Cons ci ratio: 9.263002e-03	ci left: 8.828686e-02	ci right 8.910900e-02	k: 163203	n:1840000
KS ci ratio: 1.453560e-01	ci left: 3.663874e-04	ci right 4.243345e-04	k: 726	n:1840000
DIS3   1840000 perm   1740 sec   (1057 perm/sec)   p_kst 3.945652e-04   p_cons 8.869728e-02   p_joint 3.945652e-04

Joint ci ratio: 1.450570e-01	ci left: 3.659696e-04	ci right 4.237213e-04	k: 729	n:1850000
Cons ci ratio: 9.237716e-03	ci left: 8.829176e-02	ci right 8.911169e-02	k: 164097	n:1850000
KS ci ratio: 1.450570e-01	ci left: 3.659696e-04	ci right 4.237213e-04	k: 729	n:1850000
DIS3   1850000 perm   1757 sec   (1053 perm/sec)   p_kst 3.940541e-04   p_cons 8.870108e-02   p_joint 3.940541e-04

Joint ci ratio: 1.447599e-01	ci left: 3.655564e-04	ci right 4.231146e-04	k: 732	n:1860000
Cons ci ratio: 9.212361e-03	ci left: 8.830144e-02	ci right 8.911919e-02	k: 165000	n:1860000
KS ci ratio: 1.447599e-01	ci left: 3.655564e-04	ci right 4.231146e-04	k: 732	n:1860000
DIS3   1860000 perm   1775 sec   (1048 perm/sec)   p_kst 3.935484e-04   p_cons 8.870968e-02   p_joint 3.935484e-04

Joint ci ratio: 1.443666e-01	ci left: 3.656632e-04	ci right 4.230683e-04	k: 736	n:1870000
Cons ci ratio: 9.187760e-03	ci left: 8.830142e-02	ci right 8.911697e-02	k: 165885	n:1870000
KS ci ratio: 1.443666e-01	ci left: 3.656632e-04	ci right 4.230683e-04	k: 736	n:1870000
DIS3   1870000 perm   1792 sec   (1044 perm/sec)   p_kst 3.935829e-04   p_cons 8.870856e-02   p_joint 3.935829e-04

Joint ci ratio: 1.441711e-01	ci left: 3.647436e-04	ci right 4.219201e-04	k: 738	n:1880000
Cons ci ratio: 9.165526e-03	ci left: 8.826317e-02	ci right 8.907639e-02	k: 166698	n:1880000
KS ci ratio: 1.441711e-01	ci left: 3.647436e-04	ci right 4.219201e-04	k: 738	n:1880000
DIS3   1880000 perm   1809 sec   (1039 perm/sec)   p_kst 3.925532e-04   p_cons 8.866915e-02   p_joint 3.925532e-04

Joint ci ratio: 1.435893e-01	ci left: 3.658741e-04	ci right 4.229765e-04	k: 744	n:1890000
Cons ci ratio: 9.142824e-03	ci left: 8.823643e-02	ci right 8.904737e-02	k: 167532	n:1890000
KS ci ratio: 1.435893e-01	ci left: 3.658741e-04	ci right 4.229765e-04	k: 744	n:1890000
DIS3   1890000 perm   1827 sec   (1035 perm/sec)   p_kst 3.936508e-04   p_cons 8.864127e-02   p_joint 3.936508e-04

Joint ci ratio: 1.431099e-01	ci left: 3.664857e-04	ci right 4.234762e-04	k: 749	n:1900000
Cons ci ratio: 9.118121e-03	ci left: 8.824830e-02	ci right 8.905716e-02	k: 168439	n:1900000
KS ci ratio: 1.431099e-01	ci left: 3.664857e-04	ci right 4.234762e-04	k: 749	n:1900000
DIS3   1900000 perm   1843 sec   (1031 perm/sec)   p_kst 3.942105e-04   p_cons 8.865211e-02   p_joint 3.942105e-04

Joint ci ratio: 1.426352e-01	ci left: 3.670911e-04	ci right 4.239704e-04	k: 754	n:1910000
Cons ci ratio: 9.096063e-03	ci left: 8.821670e-02	ci right 8.902330e-02	k: 169263	n:1910000
KS ci ratio: 1.426352e-01	ci left: 3.670911e-04	ci right 4.239704e-04	k: 754	n:1910000
DIS3   1910000 perm   1861 sec   (1026 perm/sec)   p_kst 3.947644e-04   p_cons 8.861937e-02   p_joint 3.947644e-04

Joint ci ratio: 1.420717e-01	ci left: 3.681929e-04	ci right 4.249984e-04	k: 760	n:1920000
Cons ci ratio: 9.072087e-03	ci left: 8.822232e-02	ci right 8.902684e-02	k: 170158	n:1920000
KS ci ratio: 1.420717e-01	ci left: 3.681929e-04	ci right 4.249984e-04	k: 760	n:1920000
DIS3   1920000 perm   1878 sec   (1022 perm/sec)   p_kst 3.958333e-04   p_cons 8.862396e-02   p_joint 3.958333e-04

Joint ci ratio: 1.415148e-01	ci left: 3.692837e-04	ci right 4.260153e-04	k: 766	n:1930000
Cons ci ratio: 9.049083e-03	ci left: 8.821393e-02	ci right 8.901632e-02	k: 171026	n:1930000
KS ci ratio: 1.415148e-01	ci left: 3.692837e-04	ci right 4.260153e-04	k: 766	n:1930000
DIS3   1930000 perm   1895 sec   (1019 perm/sec)   p_kst 3.968912e-04   p_cons 8.861451e-02   p_joint 3.968912e-04

Joint ci ratio: 1.411473e-01	ci left: 3.693692e-04	ci right 4.259541e-04	k: 770	n:1940000
Cons ci ratio: 9.025965e-03	ci left: 8.821078e-02	ci right 8.901107e-02	k: 171904	n:1940000
KS ci ratio: 1.411473e-01	ci left: 3.693692e-04	ci right 4.259541e-04	k: 770	n:1940000
DIS3   1940000 perm   1913 sec   (1014 perm/sec)   p_kst 3.969072e-04   p_cons 8.861031e-02   p_joint 3.969072e-04

Joint ci ratio: 1.405107e-01	ci left: 3.709382e-04	ci right 4.274858e-04	k: 777	n:1950000
Cons ci ratio: 9.001509e-03	ci left: 8.823478e-02	ci right 8.903311e-02	k: 172835	n:1950000
KS ci ratio: 1.405107e-01	ci left: 3.709382e-04	ci right 4.274858e-04	k: 777	n:1950000
DIS3   1950000 perm   1931 sec   (1010 perm/sec)   p_kst 3.984615e-04   p_cons 8.863333e-02   p_joint 3.984615e-04

Joint ci ratio: 1.400614e-01	ci left: 3.715072e-04	ci right 4.279453e-04	k: 782	n:1960000
Cons ci ratio: 8.979547e-03	ci left: 8.821729e-02	ci right 8.901351e-02	k: 173685	n:1960000
KS ci ratio: 1.400614e-01	ci left: 3.715072e-04	ci right 4.279453e-04	k: 782	n:1960000
DIS3   1960000 perm   1949 sec   (1006 perm/sec)   p_kst 3.989796e-04   p_cons 8.861480e-02   p_joint 3.989796e-04

Joint ci ratio: 1.397050e-01	ci left: 3.715808e-04	ci right 4.278744e-04	k: 786	n:1970000
Cons ci ratio: 8.955859e-03	ci left: 8.823393e-02	ci right 8.902819e-02	k: 174602	n:1970000
KS ci ratio: 1.397050e-01	ci left: 3.715808e-04	ci right 4.278744e-04	k: 786	n:1970000
DIS3   1970000 perm   1967 sec   (1001 perm/sec)   p_kst 3.989848e-04   p_cons 8.863046e-02   p_joint 3.989848e-04

Joint ci ratio: 1.390001e-01	ci left: 3.736037e-04	ci right 4.298946e-04	k: 794	n:1980000
Cons ci ratio: 8.932637e-03	ci left: 8.824537e-02	ci right 8.903766e-02	k: 175509	n:1980000
KS ci ratio: 1.390001e-01	ci left: 3.736037e-04	ci right 4.298946e-04	k: 794	n:1980000
DIS3   1980000 perm   1985 sec   (997 perm/sec)   p_kst 4.010101e-04   p_cons 8.864091e-02   p_joint 4.010101e-04

Joint ci ratio: 1.382198e-01	ci left: 3.760921e-04	ci right 4.324136e-04	k: 803	n:1990000
Cons ci ratio: 8.911341e-03	ci left: 8.822509e-02	ci right 8.901530e-02	k: 176353	n:1990000
KS ci ratio: 1.382198e-01	ci left: 3.760921e-04	ci right 4.324136e-04	k: 803	n:1990000
DIS3   1990000 perm   2003 sec   (993 perm/sec)   p_kst 4.035176e-04   p_cons 8.861960e-02   p_joint 4.035176e-04

Joint ci ratio: 1.379627e-01	ci left: 3.756598e-04	ci right 4.318034e-04	k: 806	n:2000000
Cons ci ratio: 8.888270e-03	ci left: 8.823995e-02	ci right 8.902824e-02	k: 177267	n:2000000
KS ci ratio: 1.379627e-01	ci left: 3.756598e-04	ci right 4.318034e-04	k: 806	n:2000000
DIS3   2000000 perm   2022 sec   (989 perm/sec)   p_kst 4.030000e-04   p_cons 8.863350e-02   p_joint 4.030000e-04

Joint ci ratio: 1.377921e-01	ci left: 3.747515e-04	ci right 4.306844e-04	k: 808	n:2010000
Cons ci ratio: 8.866715e-03	ci left: 8.823034e-02	ci right 8.901662e-02	k: 178132	n:2010000
KS ci ratio: 1.377921e-01	ci left: 3.747515e-04	ci right 4.306844e-04	k: 808	n:2010000
DIS3   2010000 perm   2040 sec   (985 perm/sec)   p_kst 4.019900e-04   p_cons 8.862289e-02   p_joint 4.019900e-04

Joint ci ratio: 1.374527e-01	ci left: 3.748083e-04	ci right 4.306007e-04	k: 812	n:2020000
Cons ci ratio: 8.844936e-03	ci left: 8.822774e-02	ci right 8.901205e-02	k: 179011	n:2020000
KS ci ratio: 1.374527e-01	ci left: 3.748083e-04	ci right 4.306007e-04	k: 812	n:2020000
DIS3   2020000 perm   2057 sec   (982 perm/sec)   p_kst 4.019802e-04   p_cons 8.861931e-02   p_joint 4.019802e-04

Joint ci ratio: 1.368647e-01	ci left: 3.762920e-04	ci right 4.320460e-04	k: 819	n:2030000
Cons ci ratio: 8.822618e-03	ci left: 8.823795e-02	ci right 8.902037e-02	k: 179916	n:2030000
KS ci ratio: 1.368647e-01	ci left: 3.762920e-04	ci right 4.320460e-04	k: 819	n:2030000
DIS3   2030000 perm   2075 sec   (978 perm/sec)   p_kst 4.034483e-04   p_cons 8.862857e-02   p_joint 4.034483e-04

Joint ci ratio: 1.365321e-01	ci left: 3.763411e-04	ci right 4.319559e-04	k: 823	n:2040000
Cons ci ratio: 8.800521e-03	ci left: 8.824708e-02	ci right 8.902761e-02	k: 180819	n:2040000
KS ci ratio: 1.365321e-01	ci left: 3.763411e-04	ci right 4.319559e-04	k: 823	n:2040000
DIS3   2040000 perm   2093 sec   (975 perm/sec)   p_kst 4.034314e-04   p_cons 8.863676e-02   p_joint 4.034314e-04

Joint ci ratio: 1.362842e-01	ci left: 3.759188e-04	ci right 4.313621e-04	k: 826	n:2050000
Cons ci ratio: 8.779915e-03	ci left: 8.823179e-02	ci right 8.901035e-02	k: 181672	n:2050000
KS ci ratio: 1.362842e-01	ci left: 3.759188e-04	ci right 4.313621e-04	k: 826	n:2050000
DIS3   2050000 perm   2111 sec   (971 perm/sec)   p_kst 4.029268e-04   p_cons 8.862049e-02   p_joint 4.029268e-04

Joint ci ratio: 1.359558e-01	ci left: 3.759695e-04	ci right 4.312760e-04	k: 830	n:2060000
Cons ci ratio: 8.758689e-03	ci left: 8.823070e-02	ci right 8.900735e-02	k: 182554	n:2060000
KS ci ratio: 1.359558e-01	ci left: 3.759695e-04	ci right 4.312760e-04	k: 830	n:2060000
DIS3   2060000 perm   2130 sec   (967 perm/sec)   p_kst 4.029126e-04   p_cons 8.861845e-02   p_joint 4.029126e-04

Joint ci ratio: 1.353867e-01	ci left: 3.774202e-04	ci right 4.326889e-04	k: 837	n:2070000
Cons ci ratio: 8.736911e-03	ci left: 8.824263e-02	ci right 8.901745e-02	k: 183463	n:2070000
KS ci ratio: 1.353867e-01	ci left: 3.774202e-04	ci right 4.326889e-04	k: 837	n:2070000
DIS3   2070000 perm   2148 sec   (964 perm/sec)   p_kst 4.043478e-04   p_cons 8.862947e-02   p_joint 4.043478e-04

Joint ci ratio: 1.352255e-01	ci left: 3.765346e-04	ci right 4.316027e-04	k: 839	n:2080000
Cons ci ratio: 8.716099e-03	ci left: 8.823958e-02	ci right 8.901252e-02	k: 184341	n:2080000
KS ci ratio: 1.352255e-01	ci left: 3.765346e-04	ci right 4.316027e-04	k: 839	n:2080000
DIS3   2080000 perm   2166 sec   (960 perm/sec)   p_kst 4.033654e-04   p_cons 8.862548e-02   p_joint 4.033654e-04

Joint ci ratio: 1.348248e-01	ci left: 3.770446e-04	ci right 4.320107e-04	k: 844	n:2090000
Cons ci ratio: 8.694456e-03	ci left: 8.825471e-02	ci right 8.902585e-02	k: 185257	n:2090000
KS ci ratio: 1.348248e-01	ci left: 3.770446e-04	ci right 4.320107e-04	k: 844	n:2090000
DIS3   2090000 perm   2184 sec   (957 perm/sec)   p_kst 4.038278e-04   p_cons 8.863971e-02   p_joint 4.038278e-04

Joint ci ratio: 1.344276e-01	ci left: 3.775499e-04	ci right 4.324146e-04	k: 849	n:2100000
Cons ci ratio: 8.672795e-03	ci left: 8.827303e-02	ci right 8.904240e-02	k: 186180	n:2100000
KS ci ratio: 1.344276e-01	ci left: 3.775499e-04	ci right 4.324146e-04	k: 849	n:2100000
DIS3   2100000 perm   2203 sec   (953 perm/sec)   p_kst 4.042857e-04   p_cons 8.865714e-02   p_joint 4.042857e-04

Joint ci ratio: 1.344278e-01	ci left: 3.757605e-04	ci right 4.303653e-04	k: 849	n:2110000
Cons ci ratio: 8.652487e-03	ci left: 8.826894e-02	ci right 8.903646e-02	k: 187056	n:2110000
KS ci ratio: 1.344278e-01	ci left: 3.757605e-04	ci right 4.303653e-04	k: 849	n:2110000
DIS3   2110000 perm   2221 sec   (950 perm/sec)   p_kst 4.023697e-04   p_cons 8.865213e-02   p_joint 4.023697e-04

Joint ci ratio: 1.340341e-01	ci left: 3.762674e-04	ci right 4.307729e-04	k: 854	n:2120000
Cons ci ratio: 8.631767e-03	ci left: 8.827524e-02	ci right 8.904097e-02	k: 187954	n:2120000
KS ci ratio: 1.340341e-01	ci left: 3.762674e-04	ci right 4.307729e-04	k: 854	n:2120000
DIS3   2120000 perm   2240 sec   (946 perm/sec)   p_kst 4.028302e-04   p_cons 8.865755e-02   p_joint 4.028302e-04

Joint ci ratio: 1.337217e-01	ci left: 3.763159e-04	ci right 4.306913e-04	k: 858	n:2130000
Cons ci ratio: 8.611171e-03	ci left: 8.828196e-02	ci right 8.904592e-02	k: 188853	n:2130000
KS ci ratio: 1.337217e-01	ci left: 3.763159e-04	ci right 4.306913e-04	k: 858	n:2130000
DIS3   2130000 perm   2259 sec   (943 perm/sec)   p_kst 4.028169e-04   p_cons 8.866338e-02   p_joint 4.028169e-04

Joint ci ratio: 1.331032e-01	ci left: 3.781710e-04	ci right 4.325417e-04	k: 866	n:2140000
Cons ci ratio: 8.590546e-03	ci left: 8.829189e-02	ci right 8.905409e-02	k: 189759	n:2140000
KS ci ratio: 1.331032e-01	ci left: 3.781710e-04	ci right 4.325417e-04	k: 866	n:2140000
DIS3   2140000 perm   2278 sec   (940 perm/sec)   p_kst 4.046729e-04   p_cons 8.867243e-02   p_joint 4.046729e-04

Joint ci ratio: 1.329500e-01	ci left: 3.773113e-04	ci right 4.314910e-04	k: 868	n:2150000
Cons ci ratio: 8.570884e-03	ci left: 8.828640e-02	ci right 8.904680e-02	k: 190632	n:2150000
KS ci ratio: 1.329500e-01	ci left: 3.773113e-04	ci right 4.314910e-04	k: 868	n:2150000
DIS3   2150000 perm   2296 sec   (936 perm/sec)   p_kst 4.037209e-04   p_cons 8.866605e-02   p_joint 4.037209e-04

Joint ci ratio: 1.327211e-01	ci left: 3.769072e-04	ci right 4.309284e-04	k: 871	n:2160000
Cons ci ratio: 8.551135e-03	ci left: 8.828513e-02	ci right 8.904375e-02	k: 191514	n:2160000
KS ci ratio: 1.327211e-01	ci left: 3.769072e-04	ci right 4.309284e-04	k: 871	n:2160000
DIS3   2160000 perm   2315 sec   (933 perm/sec)   p_kst 4.032407e-04   p_cons 8.866389e-02   p_joint 4.032407e-04

Joint ci ratio: 1.325692e-01	ci left: 3.760614e-04	ci right 4.298948e-04	k: 873	n:2170000
Cons ci ratio: 8.530306e-03	ci left: 8.830686e-02	ci right 8.906382e-02	k: 192446	n:2170000
KS ci ratio: 1.325692e-01	ci left: 3.760614e-04	ci right 4.298948e-04	k: 873	n:2170000
DIS3   2170000 perm   2335 sec   (929 perm/sec)   p_kst 4.023041e-04   p_cons 8.868479e-02   p_joint 4.023041e-04

Joint ci ratio: 1.320414e-01	ci left: 3.774411e-04	ci right 4.312400e-04	k: 880	n:2180000
Cons ci ratio: 8.511174e-03	ci left: 8.829910e-02	ci right 8.905429e-02	k: 193314	n:2180000
KS ci ratio: 1.320414e-01	ci left: 3.774411e-04	ci right 4.312400e-04	k: 880	n:2180000
DIS3   2180000 perm   2355 sec   (926 perm/sec)   p_kst 4.036697e-04   p_cons 8.867615e-02   p_joint 4.036697e-04

Joint ci ratio: 1.317427e-01	ci left: 3.774838e-04	ci right 4.311576e-04	k: 884	n:2190000
Cons ci ratio: 8.491666e-03	ci left: 8.830098e-02	ci right 8.905444e-02	k: 194203	n:2190000
KS ci ratio: 1.317427e-01	ci left: 3.774838e-04	ci right 4.311576e-04	k: 884	n:2190000
DIS3   2190000 perm   2375 sec   (922 perm/sec)   p_kst 4.036530e-04   p_cons 8.867717e-02   p_joint 4.036530e-04

Joint ci ratio: 1.315200e-01	ci left: 3.770867e-04	ci right 4.306063e-04	k: 887	n:2200000
Cons ci ratio: 8.472602e-03	ci left: 8.829695e-02	ci right 8.904868e-02	k: 195079	n:2200000
KS ci ratio: 1.315200e-01	ci left: 3.770867e-04	ci right 4.306063e-04	k: 887	n:2200000
DIS3   2200000 perm   2394 sec   (919 perm/sec)   p_kst 4.031818e-04   p_cons 8.867227e-02   p_joint 4.031818e-04

Joint ci ratio: 1.310779e-01	ci left: 3.780062e-04	ci right 4.314619e-04	k: 893	n:2210000
Cons ci ratio: 8.454044e-03	ci left: 8.828573e-02	ci right 8.903571e-02	k: 195939	n:2210000
KS ci ratio: 1.310779e-01	ci left: 3.780062e-04	ci right 4.314619e-04	k: 893	n:2210000
DIS3   2210000 perm   2414 sec   (915 perm/sec)   p_kst 4.040724e-04   p_cons 8.866018e-02   p_joint 4.040724e-04

Joint ci ratio: 1.308585e-01	ci left: 3.776105e-04	ci right 4.309140e-04	k: 896	n:2220000
Cons ci ratio: 8.434479e-03	ci left: 8.829620e-02	ci right 8.904452e-02	k: 196847	n:2220000
KS ci ratio: 1.308585e-01	ci left: 3.776105e-04	ci right 4.309140e-04	k: 896	n:2220000
DIS3   2220000 perm   2434 sec   (912 perm/sec)   p_kst 4.036036e-04   p_cons 8.866982e-02   p_joint 4.036036e-04

Joint ci ratio: 1.305677e-01	ci left: 3.776523e-04	ci right 4.308340e-04	k: 900	n:2230000
Cons ci ratio: 8.415633e-03	ci left: 8.829538e-02	ci right 8.904201e-02	k: 197730	n:2230000
KS ci ratio: 1.305677e-01	ci left: 3.776523e-04	ci right 4.308340e-04	k: 900	n:2230000
DIS3   2230000 perm   2454 sec   (909 perm/sec)   p_kst 4.035874e-04   p_cons 8.866816e-02   p_joint 4.035874e-04

Joint ci ratio: 1.302069e-01	ci left: 3.781257e-04	ci right 4.312155e-04	k: 905	n:2240000
Cons ci ratio: 8.397910e-03	ci left: 8.827541e-02	ci right 8.902030e-02	k: 198570	n:2240000
KS ci ratio: 1.302069e-01	ci left: 3.781257e-04	ci right 4.312155e-04	k: 905	n:2240000
DIS3   2240000 perm   2475 sec   (905 perm/sec)   p_kst 4.040179e-04   p_cons 8.864732e-02   p_joint 4.040179e-04

Joint ci ratio: 1.301352e-01	ci left: 3.768751e-04	ci right 4.297580e-04	k: 906	n:2250000
Cons ci ratio: 8.379008e-03	ci left: 8.828046e-02	ci right 8.902371e-02	k: 199466	n:2250000
KS ci ratio: 1.301352e-01	ci left: 3.768751e-04	ci right 4.297580e-04	k: 906	n:2250000
DIS3   2250000 perm   2494 sec   (902 perm/sec)   p_kst 4.026667e-04   p_cons 8.865156e-02   p_joint 4.026667e-04

Joint ci ratio: 1.300636e-01	ci left: 3.756356e-04	ci right 4.283133e-04	k: 907	n:2260000
Cons ci ratio: 8.360484e-03	ci left: 8.828061e-02	ci right 8.902221e-02	k: 200351	n:2260000
KS ci ratio: 1.300636e-01	ci left: 3.756356e-04	ci right 4.283133e-04	k: 907	n:2260000
DIS3   2260000 perm   2514 sec   (899 perm/sec)   p_kst 4.013274e-04   p_cons 8.865088e-02   p_joint 4.013274e-04

Joint ci ratio: 1.297069e-01	ci left: 3.761119e-04	ci right 4.287006e-04	k: 912	n:2270000
Cons ci ratio: 8.342743e-03	ci left: 8.826802e-02	ci right 8.900792e-02	k: 201207	n:2270000
KS ci ratio: 1.297069e-01	ci left: 3.761119e-04	ci right 4.287006e-04	k: 912	n:2270000
DIS3   2270000 perm   2535 sec   (896 perm/sec)   p_kst 4.017621e-04   p_cons 8.863744e-02   p_joint 4.017621e-04

Joint ci ratio: 1.295652e-01	ci left: 3.753110e-04	ci right 4.277260e-04	k: 914	n:2280000
Cons ci ratio: 8.324549e-03	ci left: 8.826647e-02	ci right 8.900475e-02	k: 202088	n:2280000
KS ci ratio: 1.295652e-01	ci left: 3.753110e-04	ci right 4.277260e-04	k: 914	n:2280000
DIS3   2280000 perm   2555 sec   (892 perm/sec)   p_kst 4.008772e-04   p_cons 8.863509e-02   p_joint 4.008772e-04

Joint ci ratio: 1.292829e-01	ci left: 3.753622e-04	ci right 4.276614e-04	k: 918	n:2290000
Cons ci ratio: 8.306136e-03	ci left: 8.827148e-02	ci right 8.900816e-02	k: 202984	n:2290000
KS ci ratio: 1.292829e-01	ci left: 3.753622e-04	ci right 4.276614e-04	k: 918	n:2290000
DIS3   2290000 perm   2575 sec   (889 perm/sec)   p_kst 4.008734e-04   p_cons 8.863930e-02   p_joint 4.008734e-04

Joint ci ratio: 1.291425e-01	ci left: 3.745717e-04	ci right 4.266997e-04	k: 920	n:2300000
Cons ci ratio: 8.289452e-03	ci left: 8.824521e-02	ci right 8.898018e-02	k: 203808	n:2300000
KS ci ratio: 1.291425e-01	ci left: 3.745717e-04	ci right 4.266997e-04	k: 920	n:2300000
DIS3   2300000 perm   2595 sec   (886 perm/sec)   p_kst 4.000000e-04   p_cons 8.861217e-02   p_joint 4.000000e-04

Joint ci ratio: 1.288630e-01	ci left: 3.746259e-04	ci right 4.266399e-04	k: 924	n:2310000
Cons ci ratio: 8.271670e-03	ci left: 8.824249e-02	ci right 8.897586e-02	k: 204686	n:2310000
KS ci ratio: 1.288630e-01	ci left: 3.746259e-04	ci right 4.266399e-04	k: 924	n:2310000
DIS3   2310000 perm   2615 sec   (883 perm/sec)   p_kst 4.000000e-04   p_cons 8.860866e-02   p_joint 4.000000e-04

Joint ci ratio: 1.286545e-01	ci left: 3.742626e-04	ci right 4.261357e-04	k: 927	n:2320000
Cons ci ratio: 8.253936e-03	ci left: 8.824109e-02	ci right 8.897287e-02	k: 205567	n:2320000
KS ci ratio: 1.286545e-01	ci left: 3.742626e-04	ci right 4.261357e-04	k: 927	n:2320000
DIS3   2320000 perm   2635 sec   (880 perm/sec)   p_kst 3.995690e-04   p_cons 8.860647e-02   p_joint 3.995690e-04

Joint ci ratio: 1.283093e-01	ci left: 3.747332e-04	ci right 4.265217e-04	k: 932	n:2330000
Cons ci ratio: 8.236163e-03	ci left: 8.824271e-02	ci right 8.897291e-02	k: 206455	n:2330000
KS ci ratio: 1.283093e-01	ci left: 3.747332e-04	ci right 4.265217e-04	k: 932	n:2330000
DIS3   2330000 perm   2656 sec   (877 perm/sec)   p_kst 4.000000e-04   p_cons 8.860730e-02   p_joint 4.000000e-04

Joint ci ratio: 1.281721e-01	ci left: 3.739591e-04	ci right 4.255810e-04	k: 934	n:2340000
Cons ci ratio: 8.218895e-03	ci left: 8.823663e-02	ci right 8.896524e-02	k: 207325	n:2340000
KS ci ratio: 1.281721e-01	ci left: 3.739591e-04	ci right 4.255810e-04	k: 934	n:2340000
DIS3   2340000 perm   2677 sec   (874 perm/sec)   p_kst 3.991453e-04   p_cons 8.860043e-02   p_joint 3.991453e-04

Joint ci ratio: 1.277627e-01	ci left: 3.748392e-04	ci right 4.264049e-04	k: 940	n:2350000
Cons ci ratio: 8.201497e-03	ci left: 8.823528e-02	ci right 8.896233e-02	k: 208206	n:2350000
KS ci ratio: 1.277627e-01	ci left: 3.748392e-04	ci right 4.264049e-04	k: 940	n:2350000
DIS3   2350000 perm   2698 sec   (871 perm/sec)   p_kst 4.000000e-04   p_cons 8.859830e-02   p_joint 4.000000e-04

Joint ci ratio: 1.272230e-01	ci left: 3.765327e-04	ci right 4.280960e-04	k: 948	n:2360000
Cons ci ratio: 8.184231e-03	ci left: 8.823352e-02	ci right 8.895902e-02	k: 209086	n:2360000
KS ci ratio: 1.272230e-01	ci left: 3.765327e-04	ci right 4.280960e-04	k: 948	n:2360000
DIS3   2360000 perm   2719 sec   (868 perm/sec)   p_kst 4.016949e-04   p_cons 8.859576e-02   p_joint 4.016949e-04

Joint ci ratio: 1.268226e-01	ci left: 3.773952e-04	ci right 4.289017e-04	k: 954	n:2370000
Cons ci ratio: 8.167714e-03	ci left: 8.821914e-02	ci right 8.894305e-02	k: 209936	n:2370000
KS ci ratio: 1.268226e-01	ci left: 3.773952e-04	ci right 4.289017e-04	k: 954	n:2370000
DIS3   2370000 perm   2741 sec   (865 perm/sec)   p_kst 4.025316e-04   p_cons 8.858059e-02   p_joint 4.025316e-04

Joint ci ratio: 1.265579e-01	ci left: 3.774369e-04	ci right 4.288335e-04	k: 958	n:2380000
Cons ci ratio: 8.150766e-03	ci left: 8.821537e-02	ci right 8.893774e-02	k: 210811	n:2380000
KS ci ratio: 1.265579e-01	ci left: 3.774369e-04	ci right 4.288335e-04	k: 958	n:2380000
DIS3   2380000 perm   2762 sec   (862 perm/sec)   p_kst 4.025210e-04   p_cons 8.857605e-02   p_joint 4.025210e-04

Joint ci ratio: 1.260984e-01	ci left: 3.786940e-04	ci right 4.300606e-04	k: 965	n:2390000
Cons ci ratio: 8.133839e-03	ci left: 8.821330e-02	ci right 8.893414e-02	k: 211690	n:2390000
KS ci ratio: 1.260984e-01	ci left: 3.786940e-04	ci right 4.300606e-04	k: 965	n:2390000
DIS3   2390000 perm   2783 sec   (859 perm/sec)   p_kst 4.037657e-04   p_cons 8.857322e-02   p_joint 4.037657e-04

Joint ci ratio: 1.258382e-01	ci left: 3.787302e-04	ci right 4.299878e-04	k: 969	n:2400000
Cons ci ratio: 8.117352e-03	ci left: 8.820459e-02	ci right 8.892390e-02	k: 212553	n:2400000
KS ci ratio: 1.258382e-01	ci left: 3.787302e-04	ci right 4.299878e-04	k: 969	n:2400000
DIS3   2400000 perm   2805 sec   (856 perm/sec)   p_kst 4.037500e-04   p_cons 8.856375e-02   p_joint 4.037500e-04

Joint ci ratio: 1.255150e-01	ci left: 3.791682e-04	ci right 4.303435e-04	k: 974	n:2410000
Cons ci ratio: 8.100903e-03	ci left: 8.819720e-02	ci right 8.891499e-02	k: 213419	n:2410000
KS ci ratio: 1.255150e-01	ci left: 3.791682e-04	ci right 4.303435e-04	k: 974	n:2410000
DIS3   2410000 perm   2826 sec   (853 perm/sec)   p_kst 4.041494e-04   p_cons 8.855560e-02   p_joint 4.041494e-04

Joint ci ratio: 1.253866e-01	ci left: 3.784019e-04	ci right 4.294176e-04	k: 976	n:2420000
Cons ci ratio: 8.084346e-03	ci left: 8.819400e-02	ci right 8.891029e-02	k: 214295	n:2420000
KS ci ratio: 1.253866e-01	ci left: 3.784019e-04	ci right 4.294176e-04	k: 976	n:2420000
DIS3   2420000 perm   2848 sec   (850 perm/sec)   p_kst 4.033058e-04   p_cons 8.855165e-02   p_joint 4.033058e-04

Joint ci ratio: 1.250669e-01	ci left: 3.788378e-04	ci right 4.297725e-04	k: 981	n:2430000
Cons ci ratio: 8.068137e-03	ci left: 8.818590e-02	ci right 8.890068e-02	k: 215159	n:2430000
KS ci ratio: 1.250669e-01	ci left: 3.788378e-04	ci right 4.297725e-04	k: 981	n:2430000
DIS3   2430000 perm   2869 sec   (847 perm/sec)   p_kst 4.037037e-04   p_cons 8.854280e-02   p_joint 4.037037e-04

Joint ci ratio: 1.247497e-01	ci left: 3.792704e-04	ci right 4.301243e-04	k: 986	n:2440000
Cons ci ratio: 8.051657e-03	ci left: 8.818523e-02	ci right 8.889853e-02	k: 216041	n:2440000
KS ci ratio: 1.247497e-01	ci left: 3.792704e-04	ci right 4.301243e-04	k: 986	n:2440000
DIS3   2440000 perm   2891 sec   (844 perm/sec)   p_kst 4.040984e-04   p_cons 8.854139e-02   p_joint 4.040984e-04

Joint ci ratio: 1.245606e-01	ci left: 3.789086e-04	ci right 4.296313e-04	k: 989	n:2450000
Cons ci ratio: 8.035115e-03	ci left: 8.818783e-02	ci right 8.889968e-02	k: 216931	n:2450000
KS ci ratio: 1.245606e-01	ci left: 3.789086e-04	ci right 4.296313e-04	k: 989	n:2450000
DIS3   2450000 perm   2913 sec   (841 perm/sec)   p_kst 4.036735e-04   p_cons 8.854327e-02   p_joint 4.036735e-04

Joint ci ratio: 1.240602e-01	ci left: 3.805193e-04	ci right 4.312380e-04	k: 997	n:2460000
Cons ci ratio: 8.019604e-03	ci left: 8.817174e-02	ci right 8.888208e-02	k: 217775	n:2460000
KS ci ratio: 1.240602e-01	ci left: 3.805193e-04	ci right 4.312380e-04	k: 997	n:2460000
DIS3   2460000 perm   2935 sec   (838 perm/sec)   p_kst 4.052846e-04   p_cons 8.852642e-02   p_joint 4.052846e-04

Joint ci ratio: 1.238124e-01	ci left: 3.805480e-04	ci right 4.311617e-04	k: 1001	n:2470000
Cons ci ratio: 8.002837e-03	ci left: 8.818285e-02	ci right 8.889179e-02	k: 218686	n:2470000
KS ci ratio: 1.238124e-01	ci left: 3.805480e-04	ci right 4.311617e-04	k: 1001	n:2470000
DIS3   2470000 perm   2957 sec   (835 perm/sec)   p_kst 4.052632e-04   p_cons 8.853684e-02   p_joint 4.052632e-04

Joint ci ratio: 1.233821e-01	ci left: 3.817488e-04	ci right 4.323329e-04	k: 1008	n:2480000
Cons ci ratio: 7.985796e-03	ci left: 8.820153e-02	ci right 8.890911e-02	k: 219616	n:2480000
KS ci ratio: 1.233821e-01	ci left: 3.817488e-04	ci right 4.323329e-04	k: 1008	n:2480000
DIS3   2480000 perm   2978 sec   (833 perm/sec)   p_kst 4.064516e-04   p_cons 8.855484e-02   p_joint 4.064516e-04

Joint ci ratio: 1.231382e-01	ci left: 3.817726e-04	ci right 4.322526e-04	k: 1012	n:2490000
Cons ci ratio: 7.970687e-03	ci left: 8.818318e-02	ci right 8.888926e-02	k: 220454	n:2490000
KS ci ratio: 1.231382e-01	ci left: 3.817726e-04	ci right 4.322526e-04	k: 1012	n:2490000
DIS3   2490000 perm   3000 sec   (830 perm/sec)   p_kst 4.064257e-04   p_cons 8.853574e-02   p_joint 4.064257e-04

Joint ci ratio: 1.227751e-01	ci left: 3.825717e-04	ci right 4.329973e-04	k: 1018	n:2500000
Cons ci ratio: 7.955407e-03	ci left: 8.817017e-02	ci right 8.887479e-02	k: 221305	n:2500000
KS ci ratio: 1.227751e-01	ci left: 3.825717e-04	ci right 4.329973e-04	k: 1018	n:2500000
DIS3   2500000 perm   3023 sec   (827 perm/sec)   p_kst 4.072000e-04   p_cons 8.852200e-02   p_joint 4.072000e-04

Joint ci ratio: 1.226549e-01	ci left: 3.818198e-04	ci right 4.320935e-04	k: 1020	n:2510000
Cons ci ratio: 7.939078e-03	ci left: 8.818033e-02	ci right 8.888357e-02	k: 222214	n:2510000
KS ci ratio: 1.226549e-01	ci left: 3.818198e-04	ci right 4.320935e-04	k: 1020	n:2510000
DIS3   2510000 perm   3045 sec   (824 perm/sec)   p_kst 4.063745e-04   p_cons 8.853147e-02   p_joint 4.063745e-04

Joint ci ratio: 1.224751e-01	ci left: 3.814587e-04	ci right 4.316058e-04	k: 1023	n:2520000
Cons ci ratio: 7.924271e-03	ci left: 8.816149e-02	ci right 8.886327e-02	k: 223050	n:2520000
KS ci ratio: 1.224751e-01	ci left: 3.814587e-04	ci right 4.316058e-04	k: 1023	n:2520000
DIS3   2520000 perm   3067 sec   (822 perm/sec)   p_kst 4.059524e-04   p_cons 8.851190e-02   p_joint 4.059524e-04

Joint ci ratio: 1.223557e-01	ci left: 3.807172e-04	ci right 4.307146e-04	k: 1025	n:2530000
Cons ci ratio: 7.909372e-03	ci left: 8.814635e-02	ci right 8.884668e-02	k: 223895	n:2530000
KS ci ratio: 1.223557e-01	ci left: 3.807172e-04	ci right 4.307146e-04	k: 1025	n:2530000
DIS3   2530000 perm   3088 sec   (819 perm/sec)   p_kst 4.051383e-04   p_cons 8.849605e-02   p_joint 4.051383e-04

Joint ci ratio: 1.219404e-01	ci left: 3.818900e-04	ci right 4.318589e-04	k: 1032	n:2540000
Cons ci ratio: 7.893729e-03	ci left: 8.814824e-02	ci right 8.884719e-02	k: 224783	n:2540000
KS ci ratio: 1.219404e-01	ci left: 3.818900e-04	ci right 4.318589e-04	k: 1032	n:2540000
DIS3   2540000 perm   3111 sec   (816 perm/sec)   p_kst 4.062992e-04   p_cons 8.849724e-02   p_joint 4.062992e-04

Joint ci ratio: 1.217050e-01	ci left: 3.819133e-04	ci right 4.317817e-04	k: 1036	n:2550000
Cons ci ratio: 7.877891e-03	ci left: 8.815598e-02	ci right 8.885359e-02	k: 225686	n:2550000
KS ci ratio: 1.217050e-01	ci left: 3.819133e-04	ci right 4.317817e-04	k: 1036	n:2550000
DIS3   2550000 perm   3134 sec   (814 perm/sec)   p_kst 4.062745e-04   p_cons 8.850431e-02   p_joint 4.062745e-04

Joint ci ratio: 1.213543e-01	ci left: 3.826939e-04	ci right 4.325100e-04	k: 1042	n:2560000
Cons ci ratio: 7.862414e-03	ci left: 8.815820e-02	ci right 8.885445e-02	k: 226575	n:2560000
KS ci ratio: 1.213543e-01	ci left: 3.826939e-04	ci right 4.325100e-04	k: 1042	n:2560000
DIS3   2560000 perm   3156 sec   (811 perm/sec)   p_kst 4.070313e-04   p_cons 8.850586e-02   p_joint 4.070313e-04

Joint ci ratio: 1.211223e-01	ci left: 3.827141e-04	ci right 4.324307e-04	k: 1046	n:2570000
Cons ci ratio: 7.847577e-03	ci left: 8.814914e-02	ci right 8.884400e-02	k: 227435	n:2570000
KS ci ratio: 1.211223e-01	ci left: 3.827141e-04	ci right 4.324307e-04	k: 1046	n:2570000
DIS3   2570000 perm   3179 sec   (809 perm/sec)   p_kst 4.070039e-04   p_cons 8.849611e-02   p_joint 4.070039e-04

Joint ci ratio: 1.208916e-01	ci left: 3.827341e-04	ci right 4.323519e-04	k: 1050	n:2580000
Cons ci ratio: 7.832767e-03	ci left: 8.814132e-02	ci right 8.883480e-02	k: 228298	n:2580000
KS ci ratio: 1.208916e-01	ci left: 3.827341e-04	ci right 4.323519e-04	k: 1050	n:2580000
DIS3   2580000 perm   3202 sec   (806 perm/sec)   p_kst 4.069767e-04   p_cons 8.848760e-02   p_joint 4.069767e-04

Joint ci ratio: 1.206622e-01	ci left: 3.827541e-04	ci right 4.322736e-04	k: 1054	n:2590000
Cons ci ratio: 7.818302e-03	ci left: 8.812816e-02	ci right 8.882025e-02	k: 229147	n:2590000
KS ci ratio: 1.206622e-01	ci left: 3.827541e-04	ci right 4.322736e-04	k: 1054	n:2590000
DIS3   2590000 perm   3225 sec   (803 perm/sec)   p_kst 4.069498e-04   p_cons 8.847375e-02   p_joint 4.069498e-04

Joint ci ratio: 1.205481e-01	ci left: 3.820280e-04	ci right 4.314035e-04	k: 1056	n:2600000
Cons ci ratio: 7.803415e-03	ci left: 8.812547e-02	ci right 8.881622e-02	k: 230023	n:2600000
KS ci ratio: 1.205481e-01	ci left: 3.820280e-04	ci right 4.314035e-04	k: 1056	n:2600000
DIS3   2600000 perm   3248 sec   (801 perm/sec)   p_kst 4.061538e-04   p_cons 8.847038e-02   p_joint 4.061538e-04

Joint ci ratio: 1.203206e-01	ci left: 3.820507e-04	ci right 4.313293e-04	k: 1060	n:2610000
Cons ci ratio: 7.787263e-03	ci left: 8.815072e-02	ci right 8.884023e-02	k: 230972	n:2610000
KS ci ratio: 1.203206e-01	ci left: 3.820507e-04	ci right 4.313293e-04	k: 1060	n:2610000
DIS3   2610000 perm   3271 sec   (798 perm/sec)   p_kst 4.061303e-04   p_cons 8.849502e-02   p_joint 4.061303e-04

Joint ci ratio: 1.202074e-01	ci left: 3.813329e-04	ci right 4.304693e-04	k: 1062	n:2620000
Cons ci ratio: 7.772625e-03	ci left: 8.814645e-02	ci right 8.883462e-02	k: 231844	n:2620000
KS ci ratio: 1.202074e-01	ci left: 3.813329e-04	ci right 4.304693e-04	k: 1062	n:2620000
DIS3   2620000 perm   3294 sec   (795 perm/sec)   p_kst 4.053435e-04   p_cons 8.849008e-02   p_joint 4.053435e-04

Joint ci ratio: 1.197575e-01	ci left: 3.828335e-04	ci right 4.319656e-04	k: 1070	n:2630000
Cons ci ratio: 7.758473e-03	ci left: 8.813385e-02	ci right 8.882067e-02	k: 232694	n:2630000
KS ci ratio: 1.197575e-01	ci left: 3.828335e-04	ci right 4.319656e-04	k: 1070	n:2630000
DIS3   2630000 perm   3318 sec   (793 perm/sec)   p_kst 4.068441e-04   p_cons 8.847681e-02   p_joint 4.068441e-04

Joint ci ratio: 1.194789e-01	ci left: 3.832207e-04	ci right 4.322800e-04	k: 1075	n:2640000
Cons ci ratio: 7.743779e-03	ci left: 8.813421e-02	ci right 8.881972e-02	k: 233578	n:2640000
KS ci ratio: 1.194789e-01	ci left: 3.832207e-04	ci right 4.322800e-04	k: 1075	n:2640000
DIS3   2640000 perm   3341 sec   (790 perm/sec)   p_kst 4.071970e-04   p_cons 8.847652e-02   p_joint 4.071970e-04

Joint ci ratio: 1.192575e-01	ci left: 3.832389e-04	ci right 4.322032e-04	k: 1079	n:2650000
Cons ci ratio: 7.729349e-03	ci left: 8.813080e-02	ci right 8.881500e-02	k: 234452	n:2650000
KS ci ratio: 1.192575e-01	ci left: 3.832389e-04	ci right 4.322032e-04	k: 1079	n:2650000
DIS3   2650000 perm   3365 sec   (788 perm/sec)   p_kst 4.071698e-04   p_cons 8.847245e-02   p_joint 4.071698e-04

Joint ci ratio: 1.191472e-01	ci left: 3.825276e-04	ci right 4.313527e-04	k: 1081	n:2660000
Cons ci ratio: 7.714460e-03	ci left: 8.813868e-02	ci right 8.882162e-02	k: 235356	n:2660000
KS ci ratio: 1.191472e-01	ci left: 3.825276e-04	ci right 4.313527e-04	k: 1081	n:2660000
DIS3   2660000 perm   3388 sec   (785 perm/sec)   p_kst 4.063910e-04   p_cons 8.847970e-02   p_joint 4.063910e-04

Joint ci ratio: 1.188729e-01	ci left: 3.829119e-04	ci right 4.316655e-04	k: 1086	n:2670000
Cons ci ratio: 7.700372e-03	ci left: 8.813154e-02	ci right 8.881317e-02	k: 236220	n:2670000
KS ci ratio: 1.188729e-01	ci left: 3.829119e-04	ci right 4.316655e-04	k: 1086	n:2670000
DIS3   2670000 perm   3411 sec   (783 perm/sec)   p_kst 4.067416e-04   p_cons 8.847191e-02   p_joint 4.067416e-04

Joint ci ratio: 1.185461e-01	ci left: 3.836554e-04	ci right 4.323601e-04	k: 1092	n:2680000
Cons ci ratio: 7.686449e-03	ci left: 8.812260e-02	ci right 8.880292e-02	k: 237079	n:2680000
KS ci ratio: 1.185461e-01	ci left: 3.836554e-04	ci right 4.323601e-04	k: 1092	n:2680000
DIS3   2680000 perm   3435 sec   (780 perm/sec)   p_kst 4.074627e-04   p_cons 8.846231e-02   p_joint 4.074627e-04

Joint ci ratio: 1.183298e-01	ci left: 3.836721e-04	ci right 4.322838e-04	k: 1096	n:2690000
Cons ci ratio: 7.672248e-03	ci left: 8.812114e-02	ci right 8.880019e-02	k: 237958	n:2690000
KS ci ratio: 1.183298e-01	ci left: 3.836721e-04	ci right 4.322838e-04	k: 1096	n:2690000
DIS3   2690000 perm   3459 sec   (778 perm/sec)   p_kst 4.074349e-04   p_cons 8.846022e-02   p_joint 4.074349e-04

Joint ci ratio: 1.181683e-01	ci left: 3.833294e-04	ci right 4.318267e-04	k: 1099	n:2700000
Cons ci ratio: 7.658196e-03	ci left: 8.811822e-02	ci right 8.879600e-02	k: 238833	n:2700000
KS ci ratio: 1.181683e-01	ci left: 3.833294e-04	ci right 4.318267e-04	k: 1099	n:2700000
DIS3   2700000 perm   3483 sec   (775 perm/sec)   p_kst 4.070370e-04   p_cons 8.845667e-02   p_joint 4.070370e-04

Joint ci ratio: 1.181147e-01	ci left: 3.822729e-04	ci right 4.306132e-04	k: 1100	n:2710000
Cons ci ratio: 7.644204e-03	ci left: 8.811569e-02	ci right 8.879220e-02	k: 239709	n:2710000
KS ci ratio: 1.181147e-01	ci left: 3.822729e-04	ci right 4.306132e-04	k: 1100	n:2710000
DIS3   2710000 perm   3506 sec   (773 perm/sec)   p_kst 4.059041e-04   p_cons 8.845351e-02   p_joint 4.059041e-04

Joint ci ratio: 1.177942e-01	ci left: 3.830083e-04	ci right 4.313010e-04	k: 1106	n:2720000
Cons ci ratio: 7.630200e-03	ci left: 8.811501e-02	ci right 8.879028e-02	k: 240590	n:2720000
KS ci ratio: 1.177942e-01	ci left: 3.830083e-04	ci right 4.313010e-04	k: 1106	n:2720000
DIS3   2720000 perm   3529 sec   (771 perm/sec)   p_kst 4.066176e-04   p_cons 8.845221e-02   p_joint 4.066176e-04

Joint ci ratio: 1.175819e-01	ci left: 3.830274e-04	ci right 4.312294e-04	k: 1110	n:2730000
Cons ci ratio: 7.616118e-03	ci left: 8.811763e-02	ci right 8.879167e-02	k: 241480	n:2730000
KS ci ratio: 1.175819e-01	ci left: 3.830274e-04	ci right 4.312294e-04	k: 1110	n:2730000
DIS3   2730000 perm   3553 sec   (768 perm/sec)   p_kst 4.065934e-04   p_cons 8.845421e-02   p_joint 4.065934e-04

Joint ci ratio: 1.173182e-01	ci left: 3.834007e-04	ci right 4.315340e-04	k: 1115	n:2740000
Cons ci ratio: 7.602010e-03	ci left: 8.812242e-02	ci right 8.879524e-02	k: 242376	n:2740000
KS ci ratio: 1.173182e-01	ci left: 3.834007e-04	ci right 4.315340e-04	k: 1115	n:2740000
DIS3   2740000 perm   3577 sec   (766 perm/sec)   p_kst 4.069343e-04   p_cons 8.845839e-02   p_joint 4.069343e-04

Joint ci ratio: 1.170041e-01	ci left: 3.841245e-04	ci right 4.322105e-04	k: 1121	n:2750000
Cons ci ratio: 7.588528e-03	ci left: 8.811556e-02	ci right 8.878713e-02	k: 243240	n:2750000
KS ci ratio: 1.170041e-01	ci left: 3.841245e-04	ci right 4.322105e-04	k: 1121	n:2750000
DIS3   2750000 perm   3601 sec   (764 perm/sec)   p_kst 4.076364e-04   p_cons 8.845091e-02   p_joint 4.076364e-04

Joint ci ratio: 1.166407e-01	ci left: 3.851948e-04	ci right 4.332548e-04	k: 1128	n:2760000
Cons ci ratio: 7.574845e-03	ci left: 8.811454e-02	ci right 8.878488e-02	k: 244120	n:2760000
KS ci ratio: 1.166407e-01	ci left: 3.851948e-04	ci right 4.332548e-04	k: 1128	n:2760000
DIS3   2760000 perm   3625 sec   (761 perm/sec)   p_kst 4.086957e-04   p_cons 8.844928e-02   p_joint 4.086957e-04

Joint ci ratio: 1.163833e-01	ci left: 3.855567e-04	ci right 4.335483e-04	k: 1133	n:2770000
Cons ci ratio: 7.561270e-03	ci left: 8.811280e-02	ci right 8.878192e-02	k: 244998	n:2770000
KS ci ratio: 1.163833e-01	ci left: 3.855567e-04	ci right 4.335483e-04	k: 1133	n:2770000
DIS3   2770000 perm   3649 sec   (759 perm/sec)   p_kst 4.090253e-04   p_cons 8.844693e-02   p_joint 4.090253e-04

Joint ci ratio: 1.161785e-01	ci left: 3.855668e-04	ci right 4.334695e-04	k: 1137	n:2780000
Cons ci ratio: 7.547767e-03	ci left: 8.811108e-02	ci right 8.877899e-02	k: 245876	n:2780000
KS ci ratio: 1.161785e-01	ci left: 3.855668e-04	ci right 4.334695e-04	k: 1137	n:2780000
DIS3   2780000 perm   3673 sec   (757 perm/sec)   p_kst 4.089928e-04   p_cons 8.844460e-02   p_joint 4.089928e-04

Joint ci ratio: 1.158734e-01	ci left: 3.862730e-04	ci right 4.341287e-04	k: 1143	n:2790000
Cons ci ratio: 7.534387e-03	ci left: 8.810830e-02	ci right 8.877499e-02	k: 246751	n:2790000
KS ci ratio: 1.158734e-01	ci left: 3.862730e-04	ci right 4.341287e-04	k: 1143	n:2790000
DIS3   2790000 perm   3698 sec   (754 perm/sec)   p_kst 4.096774e-04   p_cons 8.844122e-02   p_joint 4.096774e-04

Joint ci ratio: 1.156210e-01	ci left: 3.866274e-04	ci right 4.344157e-04	k: 1148	n:2800000
Cons ci ratio: 7.520828e-03	ci left: 8.811088e-02	ci right 8.877640e-02	k: 247641	n:2800000
KS ci ratio: 1.156210e-01	ci left: 3.866274e-04	ci right 4.344157e-04	k: 1148	n:2800000
DIS3   2800000 perm   3723 sec   (752 perm/sec)   p_kst 4.100000e-04   p_cons 8.844321e-02   p_joint 4.100000e-04

Joint ci ratio: 1.154704e-01	ci left: 3.862883e-04	ci right 4.339682e-04	k: 1151	n:2810000
Cons ci ratio: 7.507639e-03	ci left: 8.810706e-02	ci right 8.877137e-02	k: 248513	n:2810000
KS ci ratio: 1.154704e-01	ci left: 3.862883e-04	ci right 4.339682e-04	k: 1151	n:2810000
DIS3   2810000 perm   3747 sec   (750 perm/sec)   p_kst 4.096085e-04   p_cons 8.843879e-02   p_joint 4.096085e-04

Joint ci ratio: 1.152206e-01	ci left: 3.866404e-04	ci right 4.342535e-04	k: 1156	n:2820000
Cons ci ratio: 7.493680e-03	ci left: 8.812132e-02	ci right 8.878449e-02	k: 249436	n:2820000
KS ci ratio: 1.152206e-01	ci left: 3.866404e-04	ci right 4.342535e-04	k: 1156	n:2820000
DIS3   2820000 perm   3773 sec   (748 perm/sec)   p_kst 4.099291e-04   p_cons 8.845248e-02   p_joint 4.099291e-04

Joint ci ratio: 1.151212e-01	ci left: 3.859605e-04	ci right 4.334461e-04	k: 1158	n:2830000
Cons ci ratio: 7.480191e-03	ci left: 8.812701e-02	ci right 8.878903e-02	k: 250335	n:2830000
KS ci ratio: 1.151212e-01	ci left: 3.859605e-04	ci right 4.334461e-04	k: 1158	n:2830000
DIS3   2830000 perm   3797 sec   (745 perm/sec)   p_kst 4.091873e-04   p_cons 8.845760e-02   p_joint 4.091873e-04

Joint ci ratio: 1.149231e-01	ci left: 3.859694e-04	ci right 4.333688e-04	k: 1162	n:2840000
Cons ci ratio: 7.467003e-03	ci left: 8.812774e-02	ci right 8.878859e-02	k: 251220	n:2840000
KS ci ratio: 1.149231e-01	ci left: 3.859694e-04	ci right 4.333688e-04	k: 1162	n:2840000
DIS3   2840000 perm   3822 sec   (743 perm/sec)   p_kst 4.091549e-04   p_cons 8.845775e-02   p_joint 4.091549e-04

Joint ci ratio: 1.147259e-01	ci left: 3.859783e-04	ci right 4.332920e-04	k: 1166	n:2850000
Cons ci ratio: 7.454777e-03	ci left: 8.810920e-02	ci right 8.876883e-02	k: 252050	n:2850000
KS ci ratio: 1.147259e-01	ci left: 3.859783e-04	ci right 4.332920e-04	k: 1166	n:2850000
DIS3   2850000 perm   3847 sec   (741 perm/sec)   p_kst 4.091228e-04   p_cons 8.843860e-02   p_joint 4.091228e-04

Joint ci ratio: 1.143833e-01	ci left: 3.870062e-04	ci right 4.342946e-04	k: 1173	n:2860000
Cons ci ratio: 7.441981e-03	ci left: 8.810440e-02	ci right 8.876286e-02	k: 252919	n:2860000
KS ci ratio: 1.143833e-01	ci left: 3.870062e-04	ci right 4.342946e-04	k: 1173	n:2860000
DIS3   2860000 perm   3873 sec   (739 perm/sec)   p_kst 4.101399e-04   p_cons 8.843322e-02   p_joint 4.101399e-04

Joint ci ratio: 1.141405e-01	ci left: 3.873501e-04	ci right 4.345733e-04	k: 1178	n:2870000
Cons ci ratio: 7.428754e-03	ci left: 8.811043e-02	ci right 8.876775e-02	k: 253819	n:2870000
KS ci ratio: 1.141405e-01	ci left: 3.873501e-04	ci right 4.345733e-04	k: 1178	n:2870000
DIS3   2870000 perm   3898 sec   (736 perm/sec)   p_kst 4.104530e-04   p_cons 8.843868e-02   p_joint 4.104530e-04

Joint ci ratio: 1.137552e-01	ci left: 3.887038e-04	ci right 4.359213e-04	k: 1186	n:2880000
Cons ci ratio: 7.416506e-03	ci left: 8.809665e-02	ci right 8.875279e-02	k: 254662	n:2880000
KS ci ratio: 1.137552e-01	ci left: 3.887038e-04	ci right 4.359213e-04	k: 1186	n:2880000
DIS3   2880000 perm   3923 sec   (734 perm/sec)   p_kst 4.118056e-04   p_cons 8.842431e-02   p_joint 4.118056e-04

Joint ci ratio: 1.136595e-01	ci left: 3.880311e-04	ci right 4.351246e-04	k: 1188	n:2890000
Cons ci ratio: 7.404176e-03	ci left: 8.808608e-02	ci right 8.874104e-02	k: 255514	n:2890000
KS ci ratio: 1.136595e-01	ci left: 3.880311e-04	ci right 4.351246e-04	k: 1188	n:2890000
DIS3   2890000 perm   3948 sec   (732 perm/sec)   p_kst 4.110727e-04   p_cons 8.841315e-02   p_joint 4.110727e-04

Joint ci ratio: 1.134688e-01	ci left: 3.880332e-04	ci right 4.350427e-04	k: 1192	n:2900000
Cons ci ratio: 7.390659e-03	ci left: 8.810278e-02	ci right 8.875666e-02	k: 256445	n:2900000
KS ci ratio: 1.134688e-01	ci left: 3.880332e-04	ci right 4.350427e-04	k: 1192	n:2900000
DIS3   2900000 perm   3974 sec   (730 perm/sec)   p_kst 4.110345e-04   p_cons 8.842931e-02   p_joint 4.110345e-04

Joint ci ratio: 1.132790e-01	ci left: 3.880354e-04	ci right 4.349612e-04	k: 1196	n:2910000
Cons ci ratio: 7.377560e-03	ci left: 8.811182e-02	ci right 8.876460e-02	k: 257354	n:2910000
KS ci ratio: 1.132790e-01	ci left: 3.880354e-04	ci right 4.349612e-04	k: 1196	n:2910000
DIS3   2910000 perm   3999 sec   (728 perm/sec)   p_kst 4.109966e-04   p_cons 8.843780e-02   p_joint 4.109966e-04

Joint ci ratio: 1.132318e-01	ci left: 3.870392e-04	ci right 4.338238e-04	k: 1197	n:2920000
Cons ci ratio: 7.364735e-03	ci left: 8.811635e-02	ci right 8.876803e-02	k: 258250	n:2920000
KS ci ratio: 1.132318e-01	ci left: 3.870392e-04	ci right 4.338238e-04	k: 1197	n:2920000
DIS3   2920000 perm   4024 sec   (726 perm/sec)   p_kst 4.099315e-04   p_cons 8.844178e-02   p_joint 4.099315e-04

Joint ci ratio: 1.130433e-01	ci left: 3.870448e-04	ci right 4.337470e-04	k: 1201	n:2930000
Cons ci ratio: 7.351961e-03	ci left: 8.812119e-02	ci right 8.877177e-02	k: 259147	n:2930000
KS ci ratio: 1.130433e-01	ci left: 3.870448e-04	ci right 4.337470e-04	k: 1201	n:2930000
DIS3   2930000 perm   4050 sec   (723 perm/sec)   p_kst 4.098976e-04   p_cons 8.844608e-02   p_joint 4.098976e-04

Joint ci ratio: 1.129025e-01	ci left: 3.867199e-04	ci right 4.333209e-04	k: 1204	n:2940000
Cons ci ratio: 7.339717e-03	ci left: 8.811581e-02	ci right 8.876527e-02	k: 260014	n:2940000
KS ci ratio: 1.129025e-01	ci left: 3.867199e-04	ci right 4.333209e-04	k: 1204	n:2940000
DIS3   2940000 perm   4076 sec   (721 perm/sec)   p_kst 4.095238e-04   p_cons 8.844014e-02   p_joint 4.095238e-04

Joint ci ratio: 1.128557e-01	ci left: 3.857384e-04	ci right 4.322006e-04	k: 1205	n:2950000
Cons ci ratio: 7.327226e-03	ci left: 8.811724e-02	ci right 8.876560e-02	k: 260901	n:2950000
KS ci ratio: 1.128557e-01	ci left: 3.857384e-04	ci right 4.322006e-04	k: 1205	n:2950000
DIS3   2950000 perm   4103 sec   (719 perm/sec)   p_kst 4.084746e-04   p_cons 8.844102e-02   p_joint 4.084746e-04

Joint ci ratio: 1.126225e-01	ci left: 3.860768e-04	ci right 4.324772e-04	k: 1210	n:2960000
Cons ci ratio: 7.314462e-03	ci left: 8.812608e-02	ci right 8.877337e-02	k: 261810	n:2960000
KS ci ratio: 1.126225e-01	ci left: 3.860768e-04	ci right 4.324772e-04	k: 1210	n:2960000
DIS3   2960000 perm   4129 sec   (717 perm/sec)   p_kst 4.087838e-04   p_cons 8.844932e-02   p_joint 4.087838e-04

Joint ci ratio: 1.124833e-01	ci left: 3.857586e-04	ci right 4.320596e-04	k: 1213	n:2970000
Cons ci ratio: 7.302359e-03	ci left: 8.812176e-02	ci right 8.876794e-02	k: 262680	n:2970000
KS ci ratio: 1.124833e-01	ci left: 3.857586e-04	ci right 4.320596e-04	k: 1213	n:2970000
DIS3   2970000 perm   4155 sec   (715 perm/sec)   p_kst 4.084175e-04   p_cons 8.844444e-02   p_joint 4.084175e-04

Joint ci ratio: 1.124370e-01	ci left: 3.847902e-04	ci right 4.309548e-04	k: 1214	n:2980000
Cons ci ratio: 7.290103e-03	ci left: 8.812215e-02	ci right 8.876724e-02	k: 263564	n:2980000
KS ci ratio: 1.124370e-01	ci left: 3.847902e-04	ci right 4.309548e-04	k: 1214	n:2980000
DIS3   2980000 perm   4180 sec   (713 perm/sec)   p_kst 4.073826e-04   p_cons 8.844430e-02   p_joint 4.073826e-04

Joint ci ratio: 1.122985e-01	ci left: 3.844784e-04	ci right 4.305450e-04	k: 1217	n:2990000
Cons ci ratio: 7.277562e-03	ci left: 8.813022e-02	ci right 8.877426e-02	k: 264471	n:2990000
KS ci ratio: 1.122985e-01	ci left: 3.844784e-04	ci right 4.305450e-04	k: 1217	n:2990000
DIS3   2990000 perm   4206 sec   (711 perm/sec)   p_kst 4.070234e-04   p_cons 8.845184e-02   p_joint 4.070234e-04

Joint ci ratio: 1.121605e-01	ci left: 3.841687e-04	ci right 4.301379e-04	k: 1220	n:3000000
Cons ci ratio: 7.266497e-03	ci left: 8.810695e-02	ci right 8.874984e-02	k: 265284	n:3000000
KS ci ratio: 1.121605e-01	ci left: 3.841687e-04	ci right 4.301379e-04	k: 1220	n:3000000
DIS3   3000000 perm   4232 sec   (709 perm/sec)   p_kst 4.066667e-04   p_cons 8.842800e-02   p_joint 4.066667e-04

Joint ci ratio: 1.120687e-01	ci left: 3.835382e-04	ci right 4.293919e-04	k: 1222	n:3010000
Cons ci ratio: 7.254854e-03	ci left: 8.809778e-02	ci right 8.873956e-02	k: 266139	n:3010000
KS ci ratio: 1.120687e-01	ci left: 3.835382e-04	ci right 4.293919e-04	k: 1222	n:3010000
DIS3   3010000 perm   4259 sec   (707 perm/sec)   p_kst 4.059801e-04   p_cons 8.841827e-02   p_joint 4.059801e-04

Joint ci ratio: 1.118859e-01	ci left: 3.835556e-04	ci right 4.293317e-04	k: 1226	n:3020000
Cons ci ratio: 7.242404e-03	ci left: 8.810783e-02	ci right 8.874858e-02	k: 267052	n:3020000
KS ci ratio: 1.118859e-01	ci left: 3.835556e-04	ci right 4.293317e-04	k: 1226	n:3020000
DIS3   3020000 perm   4285 sec   (705 perm/sec)   p_kst 4.059603e-04   p_cons 8.842781e-02   p_joint 4.059603e-04

Joint ci ratio: 1.118404e-01	ci left: 3.826106e-04	ci right 4.282540e-04	k: 1227	n:3030000
Cons ci ratio: 7.229707e-03	ci left: 8.812475e-02	ci right 8.876449e-02	k: 267986	n:3030000
KS ci ratio: 1.118404e-01	ci left: 3.826106e-04	ci right 4.282540e-04	k: 1227	n:3030000
DIS3   3030000 perm   4312 sec   (703 perm/sec)   p_kst 4.049505e-04   p_cons 8.844422e-02   p_joint 4.049505e-04

Joint ci ratio: 1.115230e-01	ci left: 3.835903e-04	ci right 4.292122e-04	k: 1234	n:3040000
Cons ci ratio: 7.217754e-03	ci left: 8.812644e-02	ci right 8.876513e-02	k: 268874	n:3040000
KS ci ratio: 1.115230e-01	ci left: 3.835903e-04	ci right 4.292122e-04	k: 1234	n:3040000
DIS3   3040000 perm   4338 sec   (701 perm/sec)   p_kst 4.059211e-04   p_cons 8.844539e-02   p_joint 4.059211e-04

Joint ci ratio: 1.114779e-01	ci left: 3.826514e-04	ci right 4.281420e-04	k: 1235	n:3050000
Cons ci ratio: 7.206138e-03	ci left: 8.812190e-02	ci right 8.875953e-02	k: 269743	n:3050000
KS ci ratio: 1.114779e-01	ci left: 3.826514e-04	ci right 4.281420e-04	k: 1235	n:3050000
DIS3   3050000 perm   4365 sec   (699 perm/sec)   p_kst 4.049180e-04   p_cons 8.844033e-02   p_joint 4.049180e-04

Joint ci ratio: 1.113429e-01	ci left: 3.823539e-04	ci right 4.277505e-04	k: 1238	n:3060000
Cons ci ratio: 7.194433e-03	ci left: 8.812066e-02	ci right 8.875724e-02	k: 270622	n:3060000
KS ci ratio: 1.113429e-01	ci left: 3.823539e-04	ci right 4.277505e-04	k: 1238	n:3060000
DIS3   3060000 perm   4391 sec   (697 perm/sec)   p_kst 4.045752e-04   p_cons 8.843856e-02   p_joint 4.045752e-04

Joint ci ratio: 1.111189e-01	ci left: 3.826918e-04	ci right 4.280312e-04	k: 1243	n:3070000
Cons ci ratio: 7.182886e-03	ci left: 8.811715e-02	ci right 8.875268e-02	k: 271494	n:3070000
KS ci ratio: 1.111189e-01	ci left: 3.826918e-04	ci right 4.280312e-04	k: 1243	n:3070000
DIS3   3070000 perm   4418 sec   (695 perm/sec)   p_kst 4.048860e-04   p_cons 8.843453e-02   p_joint 4.048860e-04

Joint ci ratio: 1.109851e-01	ci left: 3.823963e-04	ci right 4.276425e-04	k: 1246	n:3080000
Cons ci ratio: 7.170354e-03	ci left: 8.813700e-02	ci right 8.877156e-02	k: 272438	n:3080000
KS ci ratio: 1.109851e-01	ci left: 3.823963e-04	ci right 4.276425e-04	k: 1246	n:3080000
DIS3   3080000 perm   4446 sec   (693 perm/sec)   p_kst 4.045455e-04   p_cons 8.845390e-02   p_joint 4.045455e-04

Joint ci ratio: 1.107633e-01	ci left: 3.827320e-04	ci right 4.279215e-04	k: 1251	n:3090000
Cons ci ratio: 7.158592e-03	ci left: 8.814090e-02	ci right 8.877444e-02	k: 273333	n:3090000
KS ci ratio: 1.107633e-01	ci left: 3.827320e-04	ci right 4.279215e-04	k: 1251	n:3090000
DIS3   3090000 perm   4474 sec   (691 perm/sec)   p_kst 4.048544e-04   p_cons 8.845728e-02   p_joint 4.048544e-04

Joint ci ratio: 1.107634e-01	ci left: 3.814974e-04	ci right 4.265412e-04	k: 1251	n:3100000
Cons ci ratio: 7.146387e-03	ci left: 8.815604e-02	ci right 8.878860e-02	k: 274263	n:3100000
KS ci ratio: 1.107634e-01	ci left: 3.814974e-04	ci right 4.265412e-04	k: 1251	n:3100000
DIS3   3100000 perm   4500 sec   (689 perm/sec)   p_kst 4.035484e-04   p_cons 8.847194e-02   p_joint 4.035484e-04

Joint ci ratio: 1.106309e-01	ci left: 3.812086e-04	ci right 4.261610e-04	k: 1254	n:3110000
Cons ci ratio: 7.134671e-03	ci left: 8.816145e-02	ci right 8.879301e-02	k: 275163	n:3110000
KS ci ratio: 1.106309e-01	ci left: 3.812086e-04	ci right 4.261610e-04	k: 1254	n:3110000
DIS3   3110000 perm   4527 sec   (687 perm/sec)   p_kst 4.032154e-04   p_cons 8.847685e-02   p_joint 4.032154e-04

Joint ci ratio: 1.103674e-01	ci left: 3.818567e-04	ci right 4.267713e-04	k: 1260	n:3120000
Cons ci ratio: 7.123523e-03	ci left: 8.815531e-02	ci right 8.878584e-02	k: 276027	n:3120000
KS ci ratio: 1.103674e-01	ci left: 3.818567e-04	ci right 4.267713e-04	k: 1260	n:3120000
DIS3   3120000 perm   4554 sec   (685 perm/sec)   p_kst 4.038462e-04   p_cons 8.847019e-02   p_joint 4.038462e-04

Joint ci ratio: 1.101492e-01	ci left: 3.821901e-04	ci right 4.270493e-04	k: 1265	n:3130000
Cons ci ratio: 7.112454e-03	ci left: 8.814857e-02	ci right 8.877807e-02	k: 276889	n:3130000
KS ci ratio: 1.101492e-01	ci left: 3.821901e-04	ci right 4.270493e-04	k: 1265	n:3130000
DIS3   3130000 perm   4582 sec   (683 perm/sec)   p_kst 4.041534e-04   p_cons 8.846294e-02   p_joint 4.041534e-04

Joint ci ratio: 1.099756e-01	ci left: 3.822118e-04	ci right 4.269982e-04	k: 1269	n:3140000
Cons ci ratio: 7.101156e-03	ci left: 8.814824e-02	ci right 8.877673e-02	k: 277771	n:3140000
KS ci ratio: 1.099756e-01	ci left: 3.822118e-04	ci right 4.269982e-04	k: 1269	n:3140000
DIS3   3140000 perm   4611 sec   (681 perm/sec)   p_kst 4.041401e-04   p_cons 8.846210e-02   p_joint 4.041401e-04

Joint ci ratio: 1.097597e-01	ci left: 3.825421e-04	ci right 4.272735e-04	k: 1274	n:3150000
Cons ci ratio: 7.089940e-03	ci left: 8.814727e-02	ci right 8.877476e-02	k: 278651	n:3150000
KS ci ratio: 1.097597e-01	ci left: 3.825421e-04	ci right 4.272735e-04	k: 1274	n:3150000
DIS3   3150000 perm   4638 sec   (679 perm/sec)   p_kst 4.044444e-04   p_cons 8.846063e-02   p_joint 4.044444e-04

Joint ci ratio: 1.095880e-01	ci left: 3.825626e-04	ci right 4.272219e-04	k: 1278	n:3160000
Cons ci ratio: 7.078541e-03	ci left: 8.815168e-02	ci right 8.877819e-02	k: 279548	n:3160000
KS ci ratio: 1.095880e-01	ci left: 3.825626e-04	ci right 4.272219e-04	k: 1278	n:3160000
DIS3   3160000 perm   4666 sec   (677 perm/sec)   p_kst 4.044304e-04   p_cons 8.846456e-02   p_joint 4.044304e-04

Joint ci ratio: 1.095024e-01	ci left: 3.819694e-04	ci right 4.265224e-04	k: 1280	n:3170000
Cons ci ratio: 7.067210e-03	ci left: 8.815575e-02	ci right 8.878128e-02	k: 280444	n:3170000
KS ci ratio: 1.095024e-01	ci left: 3.819694e-04	ci right 4.265224e-04	k: 1280	n:3170000
DIS3   3170000 perm   4692 sec   (676 perm/sec)   p_kst 4.037855e-04   p_cons 8.846814e-02   p_joint 4.037855e-04

Joint ci ratio: 1.093318e-01	ci left: 3.819917e-04	ci right 4.264734e-04	k: 1284	n:3180000
Cons ci ratio: 7.056126e-03	ci left: 8.815540e-02	ci right 8.877994e-02	k: 281326	n:3180000
KS ci ratio: 1.093318e-01	ci left: 3.819917e-04	ci right 4.264734e-04	k: 1284	n:3180000
DIS3   3180000 perm   4719 sec   (674 perm/sec)   p_kst 4.037736e-04   p_cons 8.846730e-02   p_joint 4.037736e-04

Joint ci ratio: 1.091621e-01	ci left: 3.820139e-04	ci right 4.264247e-04	k: 1288	n:3190000
Cons ci ratio: 7.045122e-03	ci left: 8.815443e-02	ci right 8.877798e-02	k: 282206	n:3190000
KS ci ratio: 1.091621e-01	ci left: 3.820139e-04	ci right 4.264247e-04	k: 1288	n:3190000
DIS3   3190000 perm   4747 sec   (672 perm/sec)   p_kst 4.037618e-04   p_cons 8.846583e-02   p_joint 4.037618e-04

Joint ci ratio: 1.089510e-01	ci left: 3.823400e-04	ci right 4.266972e-04	k: 1293	n:3200000
Cons ci ratio: 7.033924e-03	ci left: 8.815908e-02	ci right 8.878167e-02	k: 283104	n:3200000
KS ci ratio: 1.089510e-01	ci left: 3.823400e-04	ci right 4.266972e-04	k: 1293	n:3200000
DIS3   3200000 perm   4776 sec   (670 perm/sec)   p_kst 4.040625e-04   p_cons 8.847000e-02   p_joint 4.040625e-04

Joint ci ratio: 1.088249e-01	ci left: 3.820580e-04	ci right 4.263280e-04	k: 1296	n:3210000
Cons ci ratio: 7.023185e-03	ci left: 8.815437e-02	ci right 8.877597e-02	k: 283972	n:3210000
KS ci ratio: 1.088249e-01	ci left: 3.820580e-04	ci right 4.263280e-04	k: 1296	n:3210000
DIS3   3210000 perm   4804 sec   (668 perm/sec)   p_kst 4.037383e-04   p_cons 8.846480e-02   p_joint 4.037383e-04

Joint ci ratio: 1.087411e-01	ci left: 3.814757e-04	ci right 4.256420e-04	k: 1298	n:3220000
Cons ci ratio: 7.012523e-03	ci left: 8.814907e-02	ci right 8.876969e-02	k: 284838	n:3220000
KS ci ratio: 1.087411e-01	ci left: 3.814757e-04	ci right 4.256420e-04	k: 1298	n:3220000
DIS3   3220000 perm   4833 sec   (666 perm/sec)   p_kst 4.031056e-04   p_cons 8.845901e-02   p_joint 4.031056e-04

Joint ci ratio: 1.084908e-01	ci left: 3.821018e-04	ci right 4.262322e-04	k: 1304	n:3230000
Cons ci ratio: 7.001385e-03	ci left: 8.815585e-02	ci right 8.877553e-02	k: 285743	n:3230000
KS ci ratio: 1.084908e-01	ci left: 3.821018e-04	ci right 4.262322e-04	k: 1304	n:3230000
DIS3   3230000 perm   4861 sec   (664 perm/sec)   p_kst 4.037152e-04   p_cons 8.846533e-02   p_joint 4.037152e-04

Joint ci ratio: 1.084078e-01	ci left: 3.815230e-04	ci right 4.255507e-04	k: 1306	n:3240000
Cons ci ratio: 6.990916e-03	ci left: 8.814843e-02	ci right 8.876712e-02	k: 286602	n:3240000
KS ci ratio: 1.084078e-01	ci left: 3.815230e-04	ci right 4.255507e-04	k: 1306	n:3240000
DIS3   3240000 perm   4890 sec   (663 perm/sec)   p_kst 4.030864e-04   p_cons 8.845741e-02   p_joint 4.030864e-04

Joint ci ratio: 1.082836e-01	ci left: 3.812472e-04	ci right 4.251894e-04	k: 1309	n:3250000
Cons ci ratio: 6.979534e-03	ci left: 8.816316e-02	ci right 8.878095e-02	k: 287533	n:3250000
KS ci ratio: 1.082836e-01	ci left: 3.812472e-04	ci right 4.251894e-04	k: 1309	n:3250000
DIS3   3250000 perm   4918 sec   (661 perm/sec)   p_kst 4.027692e-04   p_cons 8.847169e-02   p_joint 4.027692e-04

Joint ci ratio: 1.080776e-01	ci left: 3.815699e-04	ci right 4.254604e-04	k: 1314	n:3260000
Cons ci ratio: 9.720746e-03	ci left: 4.728221e-02	ci right 4.774437e-02	k: 154892	n:3260000
KS ci ratio: 1.080776e-01	ci left: 3.815699e-04	ci right 4.254604e-04	k: 1314	n:3260000
DIS3   3260000 perm   4947 sec   (659 perm/sec)   p_kst 4.030675e-04   p_cons 4.751288e-02   p_joint 4.030675e-04

Joint ci ratio: 1.079136e-01	ci left: 3.815933e-04	ci right 4.254156e-04	k: 1318	n:3270000
Cons ci ratio: 9.705285e-03	ci left: 4.728801e-02	ci right 4.774949e-02	k: 155385	n:3270000
KS ci ratio: 1.079136e-01	ci left: 3.815933e-04	ci right 4.254156e-04	k: 1318	n:3270000
DIS3   3270000 perm   4975 sec   (657 perm/sec)   p_kst 4.030581e-04   p_cons 4.751835e-02   p_joint 4.030581e-04

Joint ci ratio: 1.078319e-01	ci left: 3.810232e-04	ci right 4.247448e-04	k: 1320	n:3280000
Cons ci ratio: 9.689800e-03	ci left: 4.729469e-02	ci right 4.775550e-02	k: 155881	n:3280000
KS ci ratio: 1.078319e-01	ci left: 3.810232e-04	ci right 4.247448e-04	k: 1320	n:3280000
DIS3   3280000 perm   5004 sec   (655 perm/sec)   p_kst 4.024390e-04   p_cons 4.752470e-02   p_joint 4.024390e-04

Joint ci ratio: 1.077504e-01	ci left: 3.804566e-04	ci right 4.240780e-04	k: 1322	n:3290000
Cons ci ratio: 9.674681e-03	ci left: 4.729861e-02	ci right 4.775872e-02	k: 156368	n:3290000
KS ci ratio: 1.077504e-01	ci left: 3.804566e-04	ci right 4.240780e-04	k: 1322	n:3290000
DIS3   3290000 perm   5033 sec   (654 perm/sec)   p_kst 4.018237e-04   p_cons 4.752827e-02   p_joint 4.018237e-04

Joint ci ratio: 1.076690e-01	ci left: 3.798934e-04	ci right 4.234153e-04	k: 1324	n:3300000
Cons ci ratio: 9.661185e-03	ci left: 4.728799e-02	ci right 4.774735e-02	k: 156807	n:3300000
KS ci ratio: 1.076690e-01	ci left: 3.798934e-04	ci right 4.234153e-04	k: 1324	n:3300000
DIS3   3300000 perm   5062 sec   (652 perm/sec)   p_kst 4.012121e-04   p_cons 4.751727e-02   p_joint 4.012121e-04

Joint ci ratio: 1.075069e-01	ci left: 3.799216e-04	ci right 4.233771e-04	k: 1328	n:3310000
Cons ci ratio: 9.646489e-03	ci left: 4.728918e-02	ci right 4.774786e-02	k: 157285	n:3310000
KS ci ratio: 1.075069e-01	ci left: 3.799216e-04	ci right 4.233771e-04	k: 1328	n:3310000
DIS3   3310000 perm   5090 sec   (650 perm/sec)   p_kst 4.012085e-04   p_cons 4.751813e-02   p_joint 4.012085e-04

Joint ci ratio: 1.074261e-01	ci left: 3.793635e-04	ci right 4.227205e-04	k: 1330	n:3320000
Cons ci ratio: 9.631892e-03	ci left: 4.729007e-02	ci right 4.774806e-02	k: 157762	n:3320000
KS ci ratio: 1.074261e-01	ci left: 3.793635e-04	ci right 4.227205e-04	k: 1330	n:3320000
DIS3   3320000 perm   5119 sec   (649 perm/sec)   p_kst 4.006024e-04   p_cons 4.751867e-02   p_joint 4.006024e-04

Joint ci ratio: 1.073455e-01	ci left: 3.788087e-04	ci right 4.220678e-04	k: 1332	n:3330000
Cons ci ratio: 9.618733e-03	ci left: 4.727808e-02	ci right 4.773532e-02	k: 158196	n:3330000
KS ci ratio: 1.073455e-01	ci left: 3.788087e-04	ci right 4.220678e-04	k: 1332	n:3330000
DIS3   3330000 perm   5147 sec   (647 perm/sec)   p_kst 4.000000e-04   p_cons 4.750631e-02   p_joint 4.000000e-04

Joint ci ratio: 1.071448e-01	ci left: 3.791314e-04	ci right 4.223412e-04	k: 1337	n:3340000
Cons ci ratio: 9.604071e-03	ci left: 4.728079e-02	ci right 4.773736e-02	k: 158679	n:3340000
KS ci ratio: 1.071448e-01	ci left: 3.791314e-04	ci right 4.223412e-04	k: 1337	n:3340000
DIS3   3340000 perm   5176 sec   (645 perm/sec)   p_kst 4.002994e-04   p_cons 4.750868e-02   p_joint 4.002994e-04

Joint ci ratio: 1.069451e-01	ci left: 3.794523e-04	ci right 4.226130e-04	k: 1342	n:3350000
Cons ci ratio: 9.589918e-03	ci left: 4.727932e-02	ci right 4.773520e-02	k: 159148	n:3350000
KS ci ratio: 1.069451e-01	ci left: 3.794523e-04	ci right 4.226130e-04	k: 1342	n:3350000
DIS3   3350000 perm   5204 sec   (644 perm/sec)   p_kst 4.005970e-04   p_cons 4.750687e-02   p_joint 4.005970e-04

Joint ci ratio: 1.068656e-01	ci left: 3.789023e-04	ci right 4.219664e-04	k: 1344	n:3360000
Cons ci ratio: 9.576049e-03	ci left: 4.727578e-02	ci right 4.773096e-02	k: 159610	n:3360000
KS ci ratio: 1.068656e-01	ci left: 3.789023e-04	ci right 4.219664e-04	k: 1344	n:3360000
DIS3   3360000 perm   5233 sec   (642 perm/sec)   p_kst 4.000000e-04   p_cons 4.750298e-02   p_joint 4.000000e-04

Joint ci ratio: 1.067863e-01	ci left: 3.783555e-04	ci right 4.213236e-04	k: 1346	n:3370000
Cons ci ratio: 9.561298e-03	ci left: 4.728114e-02	ci right 4.773567e-02	k: 160102	n:3370000
KS ci ratio: 1.067863e-01	ci left: 3.783555e-04	ci right 4.213236e-04	k: 1346	n:3370000
DIS3   3370000 perm   5261 sec   (641 perm/sec)   p_kst 3.994065e-04   p_cons 4.750801e-02   p_joint 3.994065e-04

Joint ci ratio: 1.067071e-01	ci left: 3.778120e-04	ci right 4.206846e-04	k: 1348	n:3380000
Cons ci ratio: 9.546242e-03	ci left: 4.729001e-02	ci right 4.774390e-02	k: 160606	n:3380000
KS ci ratio: 1.067071e-01	ci left: 3.778120e-04	ci right 4.206846e-04	k: 1348	n:3380000
DIS3   3380000 perm   5290 sec   (639 perm/sec)   p_kst 3.988166e-04   p_cons 4.751657e-02   p_joint 3.988166e-04

Joint ci ratio: 1.065099e-01	ci left: 3.781332e-04	ci right 4.209579e-04	k: 1353	n:3390000
Cons ci ratio: 9.533182e-03	ci left: 4.728058e-02	ci right 4.773376e-02	k: 161048	n:3390000
KS ci ratio: 1.065099e-01	ci left: 3.781332e-04	ci right 4.209579e-04	k: 1353	n:3390000
DIS3   3390000 perm   5320 sec   (637 perm/sec)   p_kst 3.991150e-04   p_cons 4.750678e-02   p_joint 3.991150e-04

Joint ci ratio: 1.063138e-01	ci left: 3.784525e-04	ci right 4.212295e-04	k: 1358	n:3400000
Cons ci ratio: 9.519216e-03	ci left: 4.728031e-02	ci right 4.773282e-02	k: 161521	n:3400000
KS ci ratio: 1.063138e-01	ci left: 3.784525e-04	ci right 4.212295e-04	k: 1358	n:3400000
DIS3   3400000 perm   5350 sec   (636 perm/sec)   p_kst 3.994118e-04   p_cons 4.750618e-02   p_joint 3.994118e-04

Joint ci ratio: 1.061576e-01	ci left: 3.784845e-04	ci right 4.211983e-04	k: 1362	n:3410000
Cons ci ratio: 9.504388e-03	ci left: 4.728881e-02	ci right 4.774069e-02	k: 162024	n:3410000
KS ci ratio: 1.061576e-01	ci left: 3.784845e-04	ci right 4.211983e-04	k: 1362	n:3410000
DIS3   3410000 perm   5380 sec   (634 perm/sec)   p_kst 3.994135e-04   p_cons 4.751437e-02   p_joint 3.994135e-04

Joint ci ratio: 1.060799e-01	ci left: 3.779471e-04	ci right 4.205671e-04	k: 1364	n:3420000
Cons ci ratio: 9.491989e-03	ci left: 4.727481e-02	ci right 4.772596e-02	k: 162450	n:3420000
KS ci ratio: 1.060799e-01	ci left: 3.779471e-04	ci right 4.205671e-04	k: 1364	n:3420000
DIS3   3420000 perm   5409 sec   (632 perm/sec)   p_kst 3.988304e-04   p_cons 4.750000e-02   p_joint 3.988304e-04

Joint ci ratio: 1.058861e-01	ci left: 3.782643e-04	ci right 4.208373e-04	k: 1369	n:3430000
Cons ci ratio: 9.477868e-03	ci left: 4.727775e-02	ci right 4.772826e-02	k: 162934	n:3430000
KS ci ratio: 1.058861e-01	ci left: 3.782643e-04	ci right 4.208373e-04	k: 1369	n:3430000
DIS3   3430000 perm   5439 sec   (631 perm/sec)   p_kst 3.991254e-04   p_cons 4.750262e-02   p_joint 3.991254e-04

Joint ci ratio: 1.058475e-01	ci left: 3.774477e-04	ci right 4.199123e-04	k: 1370	n:3440000
Cons ci ratio: 9.464630e-03	ci left: 4.727285e-02	ci right 4.772268e-02	k: 163391	n:3440000
KS ci ratio: 1.058475e-01	ci left: 3.774477e-04	ci right 4.199123e-04	k: 1370	n:3440000
DIS3   3440000 perm   5467 sec   (629 perm/sec)   p_kst 3.982558e-04   p_cons 4.749738e-02   p_joint 3.982558e-04

Joint ci ratio: 1.056935e-01	ci left: 3.774824e-04	ci right 4.198853e-04	k: 1374	n:3450000
Cons ci ratio: 9.450660e-03	ci left: 4.727550e-02	ci right 4.772468e-02	k: 163874	n:3450000
KS ci ratio: 1.056935e-01	ci left: 3.774824e-04	ci right 4.198853e-04	k: 1374	n:3450000
DIS3   3450000 perm   5497 sec   (628 perm/sec)   p_kst 3.982609e-04   p_cons 4.749971e-02   p_joint 3.982609e-04

Joint ci ratio: 1.054636e-01	ci left: 3.780797e-04	ci right 4.204516e-04	k: 1380	n:3460000
Cons ci ratio: 9.436662e-03	ci left: 4.727899e-02	ci right 4.772754e-02	k: 164360	n:3460000
KS ci ratio: 1.054636e-01	ci left: 3.780797e-04	ci right 4.204516e-04	k: 1380	n:3460000
DIS3   3460000 perm   5527 sec   (626 perm/sec)   p_kst 3.988439e-04   p_cons 4.750289e-02   p_joint 3.988439e-04

Joint ci ratio: 1.054636e-01	ci left: 3.769901e-04	ci right 4.192399e-04	k: 1380	n:3470000
Cons ci ratio: 9.422965e-03	ci left: 4.728017e-02	ci right 4.772808e-02	k: 164838	n:3470000
KS ci ratio: 1.054636e-01	ci left: 3.769901e-04	ci right 4.192399e-04	k: 1380	n:3470000
DIS3   3470000 perm   5556 sec   (625 perm/sec)   p_kst 3.976945e-04   p_cons 4.750375e-02   p_joint 3.976945e-04

Joint ci ratio: 1.053112e-01	ci left: 3.770259e-04	ci right 4.192149e-04	k: 1384	n:3480000
Cons ci ratio: 9.408552e-03	ci left: 4.728880e-02	ci right 4.773610e-02	k: 165342	n:3480000
KS ci ratio: 1.053112e-01	ci left: 3.770259e-04	ci right 4.192149e-04	k: 1384	n:3480000
DIS3   3480000 perm   5586 sec   (623 perm/sec)   p_kst 3.977011e-04   p_cons 4.751207e-02   p_joint 3.977011e-04

Joint ci ratio: 1.050838e-01	ci left: 3.776196e-04	ci right 4.197782e-04	k: 1390	n:3490000
Cons ci ratio: 9.394472e-03	ci left: 4.729480e-02	ci right 4.774148e-02	k: 165837	n:3490000
KS ci ratio: 1.050838e-01	ci left: 3.776196e-04	ci right 4.197782e-04	k: 1390	n:3490000
DIS3   3490000 perm   5616 sec   (621 perm/sec)   p_kst 3.982808e-04   p_cons 4.751777e-02   p_joint 3.982808e-04

Joint ci ratio: 1.049331e-01	ci left: 3.776535e-04	ci right 4.197517e-04	k: 1394	n:3500000
Cons ci ratio: 9.381521e-03	ci left: 4.729050e-02	ci right 4.773653e-02	k: 166296	n:3500000
KS ci ratio: 1.049331e-01	ci left: 3.776535e-04	ci right 4.197517e-04	k: 1394	n:3500000
DIS3   3500000 perm   5646 sec   (620 perm/sec)   p_kst 3.982857e-04   p_cons 4.751314e-02   p_joint 3.982857e-04

Joint ci ratio: 1.048579e-01	ci left: 3.771324e-04	ci right 4.191405e-04	k: 1396	n:3510000
Cons ci ratio: 9.368800e-03	ci left: 4.728453e-02	ci right 4.772989e-02	k: 166749	n:3510000
KS ci ratio: 1.048579e-01	ci left: 3.771324e-04	ci right 4.191405e-04	k: 1396	n:3510000
DIS3   3510000 perm   5676 sec   (618 perm/sec)   p_kst 3.977208e-04   p_cons 4.750684e-02   p_joint 3.977208e-04

Joint ci ratio: 1.047830e-01	ci left: 3.766143e-04	ci right 4.185329e-04	k: 1398	n:3520000
Cons ci ratio: 9.354574e-03	ci left: 4.729361e-02	ci right 4.773838e-02	k: 167255	n:3520000
KS ci ratio: 1.047830e-01	ci left: 3.766143e-04	ci right 4.185329e-04	k: 1398	n:3520000
DIS3   3520000 perm   5706 sec   (617 perm/sec)   p_kst 3.971591e-04   p_cons 4.751562e-02   p_joint 3.971591e-04

Joint ci ratio: 1.046708e-01	ci left: 3.763750e-04	ci right 4.182193e-04	k: 1401	n:3530000
Cons ci ratio: 9.340530e-03	ci left: 4.730152e-02	ci right 4.774569e-02	k: 167757	n:3530000
KS ci ratio: 1.046708e-01	ci left: 3.763750e-04	ci right 4.182193e-04	k: 1401	n:3530000
DIS3   3530000 perm   5736 sec   (615 perm/sec)   p_kst 3.968839e-04   p_cons 4.752323e-02   p_joint 3.968839e-04

Joint ci ratio: 1.043364e-01	ci left: 3.777878e-04	ci right 4.196467e-04	k: 1410	n:3540000
Cons ci ratio: 9.328121e-03	ci left: 4.729415e-02	ci right 4.773766e-02	k: 168205	n:3540000
KS ci ratio: 1.043364e-01	ci left: 3.777878e-04	ci right 4.196467e-04	k: 1410	n:3540000
DIS3   3540000 perm   5766 sec   (614 perm/sec)   p_kst 3.983051e-04   p_cons 4.751554e-02   p_joint 3.983051e-04

Joint ci ratio: 1.043365e-01	ci left: 3.767235e-04	ci right 4.184646e-04	k: 1410	n:3550000
Cons ci ratio: 9.316312e-03	ci left: 4.728149e-02	ci right 4.772432e-02	k: 168634	n:3550000
KS ci ratio: 1.043365e-01	ci left: 3.767235e-04	ci right 4.184646e-04	k: 1410	n:3550000
DIS3   3550000 perm   5796 sec   (613 perm/sec)   p_kst 3.971831e-04   p_cons 4.750254e-02   p_joint 3.971831e-04

Joint ci ratio: 1.041153e-01	ci left: 3.773068e-04	ci right 4.190185e-04	k: 1416	n:3560000
Cons ci ratio: 9.303969e-03	ci left: 4.727451e-02	ci right 4.771668e-02	k: 169083	n:3560000
KS ci ratio: 1.041153e-01	ci left: 3.773068e-04	ci right 4.190185e-04	k: 1416	n:3560000
DIS3   3560000 perm   5826 sec   (611 perm/sec)   p_kst 3.977528e-04   p_cons 4.749522e-02   p_joint 3.977528e-04

Joint ci ratio: 1.039687e-01	ci left: 3.773412e-04	ci right 4.189943e-04	k: 1420	n:3570000
Cons ci ratio: 9.290842e-03	ci left: 4.727567e-02	ci right 4.771722e-02	k: 169561	n:3570000
KS ci ratio: 1.039687e-01	ci left: 3.773412e-04	ci right 4.189943e-04	k: 1420	n:3570000
DIS3   3570000 perm   5855 sec   (610 perm/sec)   p_kst 3.977591e-04   p_cons 4.749608e-02   p_joint 3.977591e-04

Joint ci ratio: 1.038956e-01	ci left: 3.768313e-04	ci right 4.183971e-04	k: 1422	n:3580000
Cons ci ratio: 9.279145e-03	ci left: 4.726345e-02	ci right 4.770433e-02	k: 169991	n:3580000
KS ci ratio: 1.038956e-01	ci left: 3.768313e-04	ci right 4.183971e-04	k: 1422	n:3580000
DIS3   3580000 perm   5886 sec   (608 perm/sec)   p_kst 3.972067e-04   p_cons 4.748352e-02   p_joint 3.972067e-04

Joint ci ratio: 1.038227e-01	ci left: 3.763243e-04	ci right 4.178033e-04	k: 1424	n:3590000
Cons ci ratio: 9.266693e-03	ci left: 4.725907e-02	ci right 4.769932e-02	k: 170449	n:3590000
KS ci ratio: 1.038227e-01	ci left: 3.763243e-04	ci right 4.178033e-04	k: 1424	n:3590000
DIS3   3590000 perm   5917 sec   (607 perm/sec)   p_kst 3.966574e-04   p_cons 4.747883e-02   p_joint 3.966574e-04

Joint ci ratio: 1.037136e-01	ci left: 3.760906e-04	ci right 4.174977e-04	k: 1427	n:3600000
Cons ci ratio: 9.254205e-03	ci left: 4.725556e-02	ci right 4.769517e-02	k: 170910	n:3600000
KS ci ratio: 1.037136e-01	ci left: 3.760906e-04	ci right 4.174977e-04	k: 1427	n:3600000
DIS3   3600000 perm   5946 sec   (605 perm/sec)   p_kst 3.963889e-04   p_cons 4.747500e-02   p_joint 3.963889e-04

Joint ci ratio: 1.037137e-01	ci left: 3.750488e-04	ci right 4.163412e-04	k: 1427	n:3610000
Cons ci ratio: 9.240240e-03	ci left: 4.726699e-02	ci right 4.770604e-02	k: 171425	n:3610000
KS ci ratio: 1.037137e-01	ci left: 3.750488e-04	ci right 4.163412e-04	k: 1427	n:3610000
DIS3   3610000 perm   5977 sec   (604 perm/sec)   p_kst 3.952909e-04   p_cons 4.748615e-02   p_joint 3.952909e-04

Joint ci ratio: 1.034964e-01	ci left: 3.756273e-04	ci right 4.168914e-04	k: 1433	n:3620000
Cons ci ratio: 9.227352e-03	ci left: 4.726843e-02	ci right 4.770688e-02	k: 171904	n:3620000
KS ci ratio: 1.034964e-01	ci left: 3.756273e-04	ci right 4.168914e-04	k: 1433	n:3620000
DIS3   3620000 perm   6009 sec   (602 perm/sec)   p_kst 3.958564e-04   p_cons 4.748729e-02   p_joint 3.958564e-04

Joint ci ratio: 1.033524e-01	ci left: 3.756659e-04	ci right 4.168734e-04	k: 1437	n:3630000
Cons ci ratio: 9.214097e-03	ci left: 4.727399e-02	ci right 4.771186e-02	k: 172398	n:3630000
KS ci ratio: 1.033524e-01	ci left: 3.756659e-04	ci right 4.168734e-04	k: 1437	n:3630000
DIS3   3630000 perm   6040 sec   (601 perm/sec)   p_kst 3.958678e-04   p_cons 4.749256e-02   p_joint 3.958678e-04

Joint ci ratio: 1.032806e-01	ci left: 3.751691e-04	ci right 4.162918e-04	k: 1439	n:3640000
Cons ci ratio: 9.200982e-03	ci left: 4.727869e-02	ci right 4.771598e-02	k: 172889	n:3640000
KS ci ratio: 1.032806e-01	ci left: 3.751691e-04	ci right 4.162918e-04	k: 1439	n:3640000
DIS3   3640000 perm   6071 sec   (600 perm/sec)   p_kst 3.953297e-04   p_cons 4.749698e-02   p_joint 3.953297e-04

Joint ci ratio: 1.032090e-01	ci left: 3.746751e-04	ci right 4.157134e-04	k: 1441	n:3650000
Cons ci ratio: 9.188786e-03	ci left: 4.727490e-02	ci right 4.771157e-02	k: 173349	n:3650000
KS ci ratio: 1.032090e-01	ci left: 3.746751e-04	ci right 4.157134e-04	k: 1441	n:3650000
DIS3   3650000 perm   6101 sec   (598 perm/sec)   p_kst 3.947945e-04   p_cons 4.749288e-02   p_joint 3.947945e-04

Joint ci ratio: 1.030305e-01	ci left: 3.749823e-04	ci right 4.159789e-04	k: 1446	n:3660000
Cons ci ratio: 9.177054e-03	ci left: 4.726704e-02	ci right 4.770308e-02	k: 173794	n:3660000
KS ci ratio: 1.030305e-01	ci left: 3.749823e-04	ci right 4.159789e-04	k: 1446	n:3660000
DIS3   3660000 perm   6132 sec   (597 perm/sec)   p_kst 3.950820e-04   p_cons 4.748470e-02   p_joint 3.950820e-04

Joint ci ratio: 1.029594e-01	ci left: 3.744914e-04	ci right 4.154044e-04	k: 1448	n:3670000
Cons ci ratio: 9.164732e-03	ci left: 4.726547e-02	ci right 4.770091e-02	k: 174262	n:3670000
KS ci ratio: 1.029594e-01	ci left: 3.744914e-04	ci right 4.154044e-04	k: 1448	n:3670000
DIS3   3670000 perm   6163 sec   (595 perm/sec)   p_kst 3.945504e-04   p_cons 4.748283e-02   p_joint 3.945504e-04

Joint ci ratio: 1.028885e-01	ci left: 3.740033e-04	ci right 4.148331e-04	k: 1450	n:3680000
Cons ci ratio: 9.152404e-03	ci left: 4.726446e-02	ci right 4.769930e-02	k: 174732	n:3680000
KS ci ratio: 1.028885e-01	ci left: 3.740033e-04	ci right 4.148331e-04	k: 1450	n:3680000
DIS3   3680000 perm   6193 sec   (594 perm/sec)   p_kst 3.940217e-04   p_cons 4.748152e-02   p_joint 3.940217e-04

Joint ci ratio: 1.027116e-01	ci left: 3.743099e-04	ci right 4.150987e-04	k: 1455	n:3690000
Cons ci ratio: 9.140400e-03	ci left: 4.726075e-02	ci right 4.769498e-02	k: 175192	n:3690000
KS ci ratio: 1.027116e-01	ci left: 3.743099e-04	ci right 4.150987e-04	k: 1455	n:3690000
DIS3   3690000 perm   6224 sec   (593 perm/sec)   p_kst 3.943089e-04   p_cons 4.747751e-02   p_joint 3.943089e-04

Joint ci ratio: 1.024656e-01	ci left: 3.751416e-04	ci right 4.159172e-04	k: 1462	n:3700000
Cons ci ratio: 9.127815e-03	ci left: 4.726326e-02	ci right 4.769691e-02	k: 175675	n:3700000
KS ci ratio: 1.024656e-01	ci left: 3.751416e-04	ci right 4.159172e-04	k: 1462	n:3700000
DIS3   3700000 perm   6256 sec   (591 perm/sec)   p_kst 3.951351e-04   p_cons 4.747973e-02   p_joint 3.951351e-04

Joint ci ratio: 1.023956e-01	ci left: 3.746557e-04	ci right 4.153490e-04	k: 1464	n:3710000
Cons ci ratio: 9.115147e-03	ci left: 4.726710e-02	ci right 4.770018e-02	k: 176163	n:3710000
KS ci ratio: 1.023956e-01	ci left: 3.746557e-04	ci right 4.153490e-04	k: 1464	n:3710000
DIS3   3710000 perm   6287 sec   (590 perm/sec)   p_kst 3.946092e-04   p_cons 4.748329e-02   p_joint 3.946092e-04

Joint ci ratio: 1.021518e-01	ci left: 3.754822e-04	ci right 4.161623e-04	k: 1471	n:3720000
Cons ci ratio: 9.102991e-03	ci left: 4.726636e-02	ci right 4.769886e-02	k: 176634	n:3720000
KS ci ratio: 1.021518e-01	ci left: 3.754822e-04	ci right 4.161623e-04	k: 1471	n:3720000
DIS3   3720000 perm   6318 sec   (589 perm/sec)   p_kst 3.954301e-04   p_cons 4.748226e-02   p_joint 3.954301e-04

Joint ci ratio: 1.020133e-01	ci left: 3.755205e-04	ci right 4.161464e-04	k: 1475	n:3730000
Cons ci ratio: 9.090318e-03	ci left: 4.727125e-02	ci right 4.770318e-02	k: 177126	n:3730000
KS ci ratio: 1.020133e-01	ci left: 3.755205e-04	ci right 4.161464e-04	k: 1475	n:3730000
DIS3   3730000 perm   6350 sec   (587 perm/sec)   p_kst 3.954424e-04   p_cons 4.748686e-02   p_joint 3.954424e-04

Joint ci ratio: 1.018410e-01	ci left: 3.758193e-04	ci right 4.164046e-04	k: 1480	n:3740000
Cons ci ratio: 9.078287e-03	ci left: 4.727024e-02	ci right 4.770159e-02	k: 177596	n:3740000
KS ci ratio: 1.018410e-01	ci left: 3.758193e-04	ci right 4.164046e-04	k: 1480	n:3740000
DIS3   3740000 perm   6382 sec   (586 perm/sec)   p_kst 3.957219e-04   p_cons 4.748556e-02   p_joint 3.957219e-04

Joint ci ratio: 1.017037e-01	ci left: 3.758566e-04	ci right 4.163880e-04	k: 1484	n:3750000
Cons ci ratio: 9.066839e-03	ci left: 4.726391e-02	ci right 4.769465e-02	k: 178046	n:3750000
KS ci ratio: 1.017037e-01	ci left: 3.758566e-04	ci right 4.163880e-04	k: 1484	n:3750000
DIS3   3750000 perm   6415 sec   (585 perm/sec)   p_kst 3.957333e-04   p_cons 4.747893e-02   p_joint 3.957333e-04

Joint ci ratio: 1.015670e-01	ci left: 3.758938e-04	ci right 4.163715e-04	k: 1488	n:3760000
Cons ci ratio: 9.054955e-03	ci left: 4.726239e-02	ci right 4.769256e-02	k: 178514	n:3760000
KS ci ratio: 1.015670e-01	ci left: 3.758938e-04	ci right 4.163715e-04	k: 1488	n:3760000
DIS3   3760000 perm   6447 sec   (583 perm/sec)   p_kst 3.957447e-04   p_cons 4.747713e-02   p_joint 3.957447e-04

Joint ci ratio: 1.015330e-01	ci left: 3.751552e-04	ci right 4.155390e-04	k: 1489	n:3770000
Cons ci ratio: 9.043250e-03	ci left: 4.725956e-02	ci right 4.768914e-02	k: 178977	n:3770000
KS ci ratio: 1.015330e-01	ci left: 3.751552e-04	ci right 4.155390e-04	k: 1489	n:3770000
DIS3   3770000 perm   6479 sec   (582 perm/sec)   p_kst 3.949602e-04   p_cons 4.747401e-02   p_joint 3.949602e-04

Joint ci ratio: 1.013969e-01	ci left: 3.751941e-04	ci right 4.155248e-04	k: 1493	n:3780000
Cons ci ratio: 9.031749e-03	ci left: 4.725516e-02	ci right 4.768415e-02	k: 179434	n:3780000
KS ci ratio: 1.013969e-01	ci left: 3.751941e-04	ci right 4.155248e-04	k: 1493	n:3780000
DIS3   3780000 perm   6511 sec   (581 perm/sec)   p_kst 3.949735e-04   p_cons 4.746931e-02   p_joint 3.949735e-04

Joint ci ratio: 1.012615e-01	ci left: 3.752328e-04	ci right 4.155105e-04	k: 1497	n:3790000
Cons ci ratio: 9.020160e-03	ci left: 4.725210e-02	ci right 4.768051e-02	k: 179896	n:3790000
KS ci ratio: 1.012615e-01	ci left: 3.752328e-04	ci right 4.155105e-04	k: 1497	n:3790000
DIS3   3790000 perm   6543 sec   (579 perm/sec)   p_kst 3.949868e-04   p_cons 4.746596e-02   p_joint 3.949868e-04

Joint ci ratio: 1.010929e-01	ci left: 3.755278e-04	ci right 4.157662e-04	k: 1502	n:3800000
Cons ci ratio: 9.007934e-03	ci left: 4.725589e-02	ci right 4.768375e-02	k: 180384	n:3800000
KS ci ratio: 1.010929e-01	ci left: 3.755278e-04	ci right 4.157662e-04	k: 1502	n:3800000
DIS3   3800000 perm   6574 sec   (578 perm/sec)   p_kst 3.952632e-04   p_cons 4.746947e-02   p_joint 3.952632e-04

Joint ci ratio: 1.008917e-01	ci left: 3.760772e-04	ci right 4.162895e-04	k: 1508	n:3810000
Cons ci ratio: 8.995627e-03	ci left: 4.726096e-02	ci right 4.768828e-02	k: 180877	n:3810000
KS ci ratio: 1.008917e-01	ci left: 3.760772e-04	ci right 4.162895e-04	k: 1508	n:3810000
DIS3   3810000 perm   6607 sec   (577 perm/sec)   p_kst 3.958005e-04   p_cons 4.747428e-02   p_joint 3.958005e-04

Joint ci ratio: 1.007916e-01	ci left: 3.758583e-04	ci right 4.160049e-04	k: 1511	n:3820000
Cons ci ratio: 8.983604e-03	ci left: 4.726366e-02	ci right 4.769043e-02	k: 181361	n:3820000
KS ci ratio: 1.007916e-01	ci left: 3.758583e-04	ci right 4.160049e-04	k: 1511	n:3820000
DIS3   3820000 perm   6638 sec   (575 perm/sec)   p_kst 3.955497e-04   p_cons 4.747670e-02   p_joint 3.955497e-04

Joint ci ratio: 1.007250e-01	ci left: 3.753859e-04	ci right 4.154540e-04	k: 1513	n:3830000
Cons ci ratio: 8.972562e-03	ci left: 4.725697e-02	ci right 4.768314e-02	k: 181809	n:3830000
KS ci ratio: 1.007250e-01	ci left: 3.753859e-04	ci right 4.154540e-04	k: 1513	n:3830000
DIS3   3830000 perm   6670 sec   (574 perm/sec)   p_kst 3.950392e-04   p_cons 4.746971e-02   p_joint 3.950392e-04

Joint ci ratio: 1.006918e-01	ci left: 3.746622e-04	ci right 4.146391e-04	k: 1514	n:3840000
Cons ci ratio: 8.961070e-03	ci left: 4.725524e-02	ci right 4.768086e-02	k: 182276	n:3840000
KS ci ratio: 1.006918e-01	ci left: 3.746622e-04	ci right 4.146391e-04	k: 1514	n:3840000
DIS3   3840000 perm   6701 sec   (573 perm/sec)   p_kst 3.942708e-04   p_cons 4.746771e-02   p_joint 3.942708e-04

Joint ci ratio: 1.006254e-01	ci left: 3.741955e-04	ci right 4.140947e-04	k: 1516	n:3850000
Cons ci ratio: 8.949365e-03	ci left: 4.725612e-02	ci right 4.768118e-02	k: 182753	n:3850000
KS ci ratio: 1.006254e-01	ci left: 3.741955e-04	ci right 4.140947e-04	k: 1516	n:3850000
DIS3   3850000 perm   6734 sec   (572 perm/sec)   p_kst 3.937662e-04   p_cons 4.746831e-02   p_joint 3.937662e-04

Joint ci ratio: 1.005261e-01	ci left: 3.739837e-04	ci right 4.138186e-04	k: 1519	n:3860000
Cons ci ratio: 8.936452e-03	ci left: 4.726966e-02	ci right 4.769423e-02	k: 183279	n:3860000
KS ci ratio: 1.005261e-01	ci left: 3.739837e-04	ci right 4.138186e-04	k: 1519	n:3860000
DIS3   3860000 perm   6767 sec   (570 perm/sec)   p_kst 3.935233e-04   p_cons 4.748161e-02   p_joint 3.935233e-04

Joint ci ratio: 1.003611e-01	ci left: 3.742769e-04	ci right 4.140738e-04	k: 1524	n:3870000
Cons ci ratio: 8.926118e-03	ci left: 4.725761e-02	ci right 4.768157e-02	k: 183706	n:3870000
KS ci ratio: 1.003611e-01	ci left: 3.742769e-04	ci right 4.140738e-04	k: 1524	n:3870000
DIS3   3870000 perm   6800 sec   (569 perm/sec)   p_kst 3.937984e-04   p_cons 4.746925e-02   p_joint 3.937984e-04

Joint ci ratio: 1.001642e-01	ci left: 3.748199e-04	ci right 4.145917e-04	k: 1530	n:3880000
Cons ci ratio: 8.914092e-03	ci left: 4.726310e-02	ci right 4.768654e-02	k: 184201	n:3880000
KS ci ratio: 1.001642e-01	ci left: 3.748199e-04	ci right 4.145917e-04	k: 1530	n:3880000
DIS3   3880000 perm   6832 sec   (568 perm/sec)   p_kst 3.943299e-04   p_cons 4.747448e-02   p_joint 3.943299e-04

Joint ci ratio: 1.000337e-01	ci left: 3.748589e-04	ci right 4.145799e-04	k: 1534	n:3890000
Cons ci ratio: 8.902747e-03	ci left: 4.726216e-02	ci right 4.768505e-02	k: 184671	n:3890000
KS ci ratio: 1.000337e-01	ci left: 3.748589e-04	ci right 4.145799e-04	k: 1534	n:3890000
DIS3   3890000 perm   6865 sec   (567 perm/sec)   p_kst 3.943445e-04   p_cons 4.747326e-02   p_joint 3.943445e-04

Joint ci ratio: 9.993605e-02	ci left: 3.746477e-04	ci right 4.143054e-04	k: 1537	n:3900000
Cons ci ratio: 8.891596e-03	ci left: 4.725968e-02	ci right 4.768202e-02	k: 185135	n:3900000
KS ci ratio: 9.993605e-02	ci left: 3.746477e-04	ci right 4.143054e-04	k: 1537	n:3900000
DIS3   3900000 perm   6899 sec   (565 perm/sec)   p_kst 3.941026e-04   p_cons 4.747051e-02   p_joint 3.941026e-04

Outputting figure to mutsig2_images.part000000000050/DIS3.2_3033_3900000_0.0003941_0.047471_0.0003941.png
                gene_name: DIS3
               theta_stop: 0.100 
                    nperm: 3900000 
                     p_ks: 0.00039 
        ci_ks_bounds_left: 0.00037 
       ci_ks_bounds_right: 0.00041 
                   p_cons: 0.047 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.048 
                  p_joint: 0.00039 
     ci_joint_bounds_left: 0.00037 
    ci_joint_bounds_right: 0.00041 

Current progress: 67 percent done.
DKK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.036150e-01	ci left: 1.186757e-01	ci right 1.317435e-01	k: 1251	n:10000
KS ci ratio: 3.685020e-02	ci left: 5.209610e-01	ci right 5.406210e-01	k: 5308	n:10000
DKK2   10000 perm   1 sec   (7034 perm/sec)   p_kst 5.308000e-01   p_cons 1.251000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.367235e-02	ci left: 1.194130e-01	ci right 1.285966e-01	k: 2479	n:20000
KS ci ratio: 2.626617e-02	ci left: 5.199020e-01	ci right 5.337902e-01	k: 10537	n:20000
DKK2   20000 perm   3 sec   (6123 perm/sec)   p_kst 5.268500e-01   p_cons 1.239500e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000050/DKK2.2_796_20000_0.52685_0.12395_1.png
                gene_name: DKK2
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000050
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 50 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1709>
Subject: Job 9877062: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1709>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000051> was used as the working directory.
Started at Fri Oct  5 22:36:33 2012
Results reported at Fri Oct  5 22:39:31 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000051.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000051.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 51  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000051.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    169.02 sec.
    Max Memory :      2429 MB
    Max Swap   :      4699 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
51
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 51
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 51: processing genes 4535 - 4624
Calculating significance of each gene.
Using projection method.
4535	DMAP1	1
4536	DMBT1	2.090542e-01
4537	DMBX1	1.084140e-01
4538	DMC1	1
4539	DMD	1.856942e-01
4540	DMGDH	1
4541	DMKN	1
4542	DMP1	1
4543	DMPK	1
4544	DMRT1	1
4545	DMRT2	4.146739e-03
4546	DMRT3	1
4547	DMRTA1	1
4548	DMRTA2	1
4549	DMRTB1	1
4550	DMRTC2	1.217003e-01
4551	DMTF1	1
4552	DMWD	1
4553	DMXL1	3.978718e-01
4554	DMXL2	5.578914e-03
4555	DNA2	1
4556	DNAH1	7.051120e-01
4557	DNAH10	7.487883e-01
4558	DNAH11	1
4559	DNAH17	1
4560	DNAH2	2.145071e-01
4561	DNAH3	7.056722e-01
4562	DNAH5	1
4563	DNAH7	1.696264e-01
4564	DNAH8	2.474938e-01
4565	DNAH9	3.356331e-01
4566	DNAI1	1
4567	DNAI2	1
4568	DNAJA1	1
4569	DNAJA2	1
4570	DNAJA3	1
4571	DNAJA4	1
4572	DNAJB1	1
4573	DNAJB11	1.138486e-01
4574	DNAJB12	1
4575	DNAJB13	1
4576	DNAJB14	1
4577	DNAJB2	6.952151e-02
4578	DNAJB3	1
4579	DNAJB4	1
4580	DNAJB5	1
4581	DNAJB6	1
4582	DNAJB7	1
4583	DNAJB8	1
4584	DNAJB9	1
4585	DNAJC1	1
4586	DNAJC10	1
4587	DNAJC11	1
4588	DNAJC12	1
4589	DNAJC13	1.954379e-01
4590	DNAJC14	1
4591	DNAJC15	1
4592	DNAJC16	1
4593	DNAJC17	1
4594	DNAJC18	1
4595	DNAJC19	1
4596	DNAJC2	1
4597	DNAJC21	1
4598	DNAJC22	1
4599	DNAJC24	1
4600	DNAJC25	1
4601	DNAJC25-GNG10	1
4602	DNAJC27	1
4603	DNAJC28	1
4604	DNAJC3	1
4605	DNAJC30	1
4606	DNAJC4	4.910186e-02
4607	DNAJC5	1
4608	DNAJC5B	4.368922e-02
4609	DNAJC5G	1
4610	DNAJC6	2.828975e-01
4611	DNAJC7	1
4612	DNAJC8	1
4613	DNAJC9	1
4614	DNAL1	1
4615	DNAL4	1
4616	DNALI1	1
4617	DNASE1	1
4618	DNASE1L1	1
4619	DNASE1L2	1
4620	DNASE1L3	1
4621	DNASE2	1
4622	DNASE2B	9.085303e-02
4623	DND1	1
4624	DNER	1
Done

Running MutSig 2:
Scatter job 51: processing genes 4535 - 4624
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
DMXL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.317620e-02	ci left: 5.728619e-01	ci right 5.922899e-01	k: 5826	n:10000
Cons ci ratio: 1.062005e-01	ci left: 1.134968e-01	ci right 1.263255e-01	k: 1198	n:10000
KS ci ratio: 1.394590e-02	ci left: 8.813485e-01	ci right 8.938247e-01	k: 8877	n:10000
DMXL2   10000 perm   3 sec   (3143 perm/sec)   p_kst 8.877000e-01   p_cons 1.198000e-01   p_joint 5.826000e-01

Joint ci ratio: 2.224861e-02	ci left: 6.013442e-01	ci right 6.149243e-01	k: 12163	n:20000
Cons ci ratio: 7.477795e-02	ci left: 1.162646e-01	ci right 1.253460e-01	k: 2415	n:20000
KS ci ratio: 9.988138e-03	ci left: 8.805993e-01	ci right 8.894885e-01	k: 17702	n:20000
DMXL2   20000 perm   9 sec   (2129 perm/sec)   p_kst 8.851000e-01   p_cons 1.207500e-01   p_joint 6.081500e-01

Outputting figure to mutsig2_images.part000000000051/DMXL2.4_9286_20000_0.8851_0.12075_0.60815.png
                gene_name: DMXL2
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.61 

Current progress: 14 percent done.
DNAH2
Processing conservation and coverage...
73% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.327139e-02	ci left: 7.306776e-01	ci right 7.479828e-01	k: 7394	n:10000
Cons ci ratio: 7.635134e-02	ci left: 2.005737e-01	ci right 2.165964e-01	k: 2085	n:10000
KS ci ratio: 2.996107e-02	ci left: 6.216565e-01	ci right 6.406671e-01	k: 6312	n:10000
DNAH2   10000 perm   3 sec   (3110 perm/sec)   p_kst 6.312000e-01   p_cons 2.085000e-01   p_joint 7.394000e-01

Outputting figure to mutsig2_images.part000000000051/DNAH2.3_13624_10000_0.6312_0.2085_0.7394.png
                gene_name: DNAH2
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 29 percent done.
DMD
Processing conservation and coverage...
85% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.429577e-03	ci left: 9.906076e-01	ci right 9.940963e-01	k: 9925	n:10000
Cons ci ratio: 3.201653e-02	ci left: 5.901194e-01	ci right 6.094224e-01	k: 5998	n:10000
KS ci ratio: 2.225767e-02	ci left: 7.476605e-01	ci right 7.645900e-01	k: 7562	n:10000
DMD   10000 perm   3 sec   (3251 perm/sec)   p_kst 7.562000e-01   p_cons 5.998000e-01   p_joint 9.925000e-01

Outputting figure to mutsig2_images.part000000000051/DMD.2_11651_10000_0.7562_0.5998_0.9925.png
                gene_name: DMD
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 43 percent done.
DMRT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.029041e-02	ci left: 9.306108e-01	ci right 9.403336e-01	k: 9356	n:10000
Cons ci ratio: 2.209473e-02	ci left: 7.503916e-01	ci right 7.672574e-01	k: 7589	n:10000
KS ci ratio: 5.012518e-02	ci left: 3.698758e-01	ci right 3.889945e-01	k: 3794	n:10000
DMRT2   10000 perm   2 sec   (5914 perm/sec)   p_kst 3.794000e-01   p_cons 7.589000e-01   p_joint 9.356000e-01

Outputting figure to mutsig2_images.part000000000051/DMRT2.2_1755_10000_0.3794_0.7589_0.9356.png
                gene_name: DMRT2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 57 percent done.
DNAH7
Processing conservation and coverage...
81% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.375648e-02	ci left: 8.841132e-01	ci right 8.964584e-01	k: 8904	n:10000
Cons ci ratio: 3.460197e-02	ci left: 5.522089e-01	ci right 5.717549e-01	k: 5620	n:10000
KS ci ratio: 1.801804e-02	ci left: 8.180184e-01	ci right 8.329915e-01	k: 8256	n:10000
DNAH7   10000 perm   3 sec   (3311 perm/sec)   p_kst 8.256000e-01   p_cons 5.620000e-01   p_joint 8.904000e-01

Outputting figure to mutsig2_images.part000000000051/DNAH7.2_12335_10000_0.8256_0.562_0.8904.png
                gene_name: DNAH7
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 71 percent done.
DNAH8
Processing conservation and coverage...
72% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.064407e-02	ci left: 9.262689e-01	ci right 9.362781e-01	k: 9314	n:10000
KS ci ratio: 1.611926e-02	ci left: 8.483534e-01	ci right 8.622389e-01	k: 8554	n:10000
DNAH8   10000 perm   3 sec   (3049 perm/sec)   p_kst 8.554000e-01   p_cons 9.314000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000051/DNAH8.2_13829_10000_0.8554_0.9314_1.png
                gene_name: DNAH8
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
DNAH9
Processing conservation and coverage...
72% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.119598e-02	ci left: 6.025685e-01	ci right 6.217661e-01	k: 6122	n:10000
KS ci ratio: 1.691880e-02	ci left: 8.357199e-01	ci right 8.500797e-01	k: 8430	n:10000
DNAH9   10000 perm   3 sec   (3279 perm/sec)   p_kst 8.430000e-01   p_cons 6.122000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000051/DNAH9.2_13737_10000_0.843_0.6122_1.png
                gene_name: DNAH9
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000051
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 51 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1640>
Subject: Job 9877065: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1640>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000052> was used as the working directory.
Started at Fri Oct  5 22:36:59 2012
Results reported at Fri Oct  5 22:38:53 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000052.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000052.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 52  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000052.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    107.76 sec.
    Max Memory :      2127 MB
    Max Swap   :      4629 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
52
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 52
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 52: processing genes 4625 - 4715
Calculating significance of each gene.
Using projection method.
4625	DNHD1	1
4626	DNLZ	1.484793e-02
4627	DNM1	1
4628	DNM1L	9.144712e-02
4629	DNM2	1
4630	DNM3	1
4631	DNMBP	1
4632	DNMT1	3.363125e-02
4633	DNMT3A	9.558114e-02
4634	DNMT3B	1
4635	DNMT3L	1
4636	DNPEP	1
4637	DNTT	1
4638	DNTTIP1	1
4639	DNTTIP2	1
4640	DOC2A	1
4641	DOCK1	1
4642	DOCK10	3.270376e-01
4643	DOCK11	2.286133e-01
4644	DOCK2	2.330645e-01
4645	DOCK3	3.526266e-01
4646	DOCK4	1
4647	DOCK5	2.680075e-01
4648	DOCK6	1
4649	DOCK7	1
4650	DOCK8	2.383724e-01
4651	DOCK9	1
4652	DOHH	1
4653	DOK1	1
4654	DOK2	1
4655	DOK3	1
4656	DOK4	1
4657	DOK5	1
4658	DOK6	1
4659	DOK7	1.627462e-02
4660	DOLK	1
4661	DOLPP1	1
4662	DOM3Z	1
4663	DONSON	1
4664	DOPEY1	1
4665	DOPEY2	2.639964e-01
4666	DOT1L	4.783029e-01
4667	DPAGT1	1
4668	DPCD	1
4669	DPEP1	1.218084e-01
4670	DPEP2	1
4671	DPEP3	1
4672	DPF1	1
4673	DPF2	1
4674	DPF3	1
4675	DPH1	1.450166e-01
4676	DPH2	1
4677	DPH3	1
4678	DPH3B	1
4679	DPH5	1
4680	DPM1	1
4681	DPM2	1
4682	DPM3	1
4683	DPP10	1
4684	DPP3	1
4685	DPP4	1
4686	DPP6	2.695483e-02
4687	DPP7	1
4688	DPP8	1.403717e-01
4689	DPP9	1
4690	DPPA2	1
4691	DPPA3	1
4692	DPPA4	1
4693	DPPA5	1
4694	DPRX	1
4695	DPT	1
4696	DPY19L1	1.730334e-01
4697	DPY19L2	1.262140e-01
4698	DPY19L3	1
4699	DPY19L4	1
4700	DPY30	1
4701	DPYD	2.087616e-01
4702	DPYS	1
4703	DPYSL2	7.436009e-02
4704	DPYSL3	1
4705	DPYSL4	1
4706	DPYSL5	1
4707	DQX1	1
4708	DR1	1
4709	DRAM1	1
4710	DRAM2	1
4711	DRAP1	1
4712	DRD1	1
4713	DRD2	2.877764e-02
4714	DRD3	1
4715	DRD4	1
Done

Running MutSig 2:
Scatter job 52: processing genes 4625 - 4715
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
DNMT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.780486e-02	ci left: 2.419322e-01	ci right 2.590133e-01	k: 2504	n:10000
Cons ci ratio: 2.435966e-02	ci left: 7.124997e-01	ci right 7.301712e-01	k: 7214	n:10000
KS ci ratio: 9.772196e-02	ci left: 1.317858e-01	ci right 1.454255e-01	k: 1385	n:10000
DNMT1   10000 perm   3 sec   (3996 perm/sec)   p_kst 1.385000e-01   p_cons 7.214000e-01   p_joint 2.504000e-01

Outputting figure to mutsig2_images.part000000000052/DNMT1.3_5063_10000_0.1385_0.7214_0.2504.png
                gene_name: DNMT1
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 33 percent done.
DOCK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.250437e-02	ci left: 9.018575e-01	ci right 9.133038e-01	k: 9077	n:10000
KS ci ratio: 6.700260e-03	ci left: 9.682593e-01	ci right 9.748622e-01	k: 9717	n:10000
DOCK3   10000 perm   3 sec   (3829 perm/sec)   p_kst 9.717000e-01   p_cons 9.077000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000052/DOCK3.2_6305_10000_0.9717_0.9077_1.png
                gene_name: DOCK3
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
DPP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.079590e-03	ci left: 9.734446e-01	ci right 9.794734e-01	k: 9766	n:10000
Cons ci ratio: 4.462184e-02	ci left: 4.257520e-01	ci right 4.452856e-01	k: 4355	n:10000
KS ci ratio: 1.217655e-01	ci left: 8.815461e-02	ci right 9.968320e-02	k: 938	n:10000
DPP6   10000 perm   2 sec   (4868 perm/sec)   p_kst 9.380000e-02   p_cons 4.355000e-01   p_joint 9.766000e-01

Joint ci ratio: 1.916723e-02	ci left: 6.699663e-01	ci right 6.829824e-01	k: 13530	n:20000
Cons ci ratio: 3.170967e-02	ci left: 4.262179e-01	ci right 4.400015e-01	k: 8662	n:20000
KS ci ratio: 8.602708e-02	ci left: 8.998976e-02	ci right 9.812870e-02	k: 1880	n:20000
DPP6   20000 perm   5 sec   (4430 perm/sec)   p_kst 9.400000e-02   p_cons 4.331000e-01   p_joint 6.765000e-01

Outputting figure to mutsig2_images.part000000000052/DPP6.2_2818_20000_0.094_0.4331_0.6765.png
                gene_name: DPP6
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.098 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000052
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 52 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1703>
Subject: Job 9877066: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1703>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000053> was used as the working directory.
Started at Fri Oct  5 22:37:06 2012
Results reported at Sat Oct  6 01:49:03 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000053.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000053.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 53  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000053.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  11620.83 sec.
    Max Memory :      2180 MB
    Max Swap   :      4769 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
53
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 53
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 53: processing genes 4716 - 4806
Calculating significance of each gene.
Using projection method.
4716	DRD5	1.212801e-02
4717	DRG1	1
4718	DRG2	1
4719	DRGX	1
4720	DRP2	1
4721	DSC1	1
4722	DSC2	1
4723	DSC3	1
4724	DSCAM	1.443198e-01
4725	DSCAML1	1
4726	DSCC1	6.518897e-02
4727	DSCR3	1
4728	DSCR4	1
4729	DSCR6	1
4730	DSE	1
4731	DSEL	2.672656e-01
4732	DSG1	1
4733	DSG2	1.709702e-01
4734	DSG3	1
4735	DSG4	1
4736	DSN1	3.031443e-02
4737	DSP	1
4738	DSPP	1
4739	DST	7.468501e-01
4740	DSTN	1
4741	DSTYK	1.268231e-01
4742	DTD1	1
4743	DTL	1
4744	DTNA	1
4745	DTNB	1
4746	DTNBP1	1
4747	DTWD1	1
4748	DTWD2	1
4749	DTX1	1
4750	DTX2	1
4751	DTX3	1
4752	DTX3L	1
4753	DTX4	1
4754	DTYMK	1
4755	DULLARD	1
4756	DUOX1	1
4757	DUOX2	3.902017e-01
4758	DUOXA1	1
4759	DUOXA2	1
4760	DUPD1	1
4761	DUS1L	1
4762	DUS2L	1
4763	DUS3L	1.073768e-01
4764	DUS4L	1
4765	DUSP1	1
4766	DUSP10	1
4767	DUSP11	1
4768	DUSP12	1
4769	DUSP13	1
4770	DUSP14	1
4771	DUSP15	1
4772	DUSP16	1.099341e-01
4773	DUSP18	1
4774	DUSP19	1
4775	DUSP2	1
4776	DUSP21	1
4777	DUSP22	1
4778	DUSP23	1
4779	DUSP26	1
4780	DUSP27	2.532256e-03
4781	DUSP28	1
4782	DUSP3	1
4783	DUSP4	1
4784	DUSP5	1
4785	DUSP6	1
4786	DUSP7	4.288152e-02
4787	DUSP8	1
4788	DUSP9	1
4789	DUT	1
4790	DUXA	1
4791	DVL1	1
In gene DVL2 the following bins exceed PROBCAP:
    PRAD-CH-5761	categ 6	N = 2237    n = 1	mu =   2.99e-07
4792	DVL2	8.812512e-02
4793	DVL3	1
4794	DYDC1	1
4795	DYDC2	1
4796	DYM	1
4797	DYNC1H1	8.384867e-01
4798	DYNC1I1	1
4799	DYNC1I2	1
4800	DYNC1LI1	1
4801	DYNC1LI2	1
4802	DYNC2H1	6.873371e-01
4803	DYNC2LI1	1
4804	DYNLL1	1
4805	DYNLL2	1
4806	DYNLRB1	1
Done

Running MutSig 2:
Scatter job 53: processing genes 4716 - 4806
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
DUSP27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.896315e-01	ci left: 3.113627e-03	ci right 5.787748e-03	k: 43	n:10000
Cons ci ratio: 1.204417e-02	ci left: 9.081279e-01	ci right 9.192297e-01	k: 9138	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
DUSP27   10000 perm   2 sec   (4943 perm/sec)   p_kst 1.000000e-04   p_cons 9.138000e-01   p_joint 4.300000e-03

Joint ci ratio: 4.373811e-01	ci left: 3.128462e-03	ci right 4.920482e-03	k: 79	n:20000
Cons ci ratio: 8.498704e-03	ci left: 9.101310e-01	ci right 9.179481e-01	k: 18282	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
DUSP27   20000 perm   7 sec   (2763 perm/sec)   p_kst 5.000000e-05   p_cons 9.141000e-01   p_joint 3.950000e-03

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 6.971067e-03	ci left: 9.101267e-01	ci right 9.165263e-01	k: 27401	n:30000
KS ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
DUSP27   30000 perm   10 sec   (3130 perm/sec)   p_kst 3.333333e-05   p_cons 9.133667e-01   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 6.037570e-03	ci left: 9.105505e-01	ci right 9.160893e-01	k: 36534	n:40000
KS ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
DUSP27   40000 perm   12 sec   (3300 perm/sec)   p_kst 2.500000e-05   p_cons 9.133500e-01   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 5.637863e-03	ci left: 9.036918e-01	ci right 9.088209e-01	k: 45314	n:50000
KS ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
DUSP27   50000 perm   15 sec   (3396 perm/sec)   p_kst 2.000000e-05   p_cons 9.062800e-01   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 5.160104e-03	ci left: 9.034684e-01	ci right 9.081589e-01	k: 54350	n:60000
KS ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
DUSP27   60000 perm   17 sec   (3459 perm/sec)   p_kst 1.666667e-05   p_cons 9.058333e-01   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 4.552044e-03	ci left: 9.116532e-01	ci right 9.158267e-01	k: 63963	n:70000
KS ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
DUSP27   70000 perm   20 sec   (3491 perm/sec)   p_kst 1.428571e-05   p_cons 9.137571e-01   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 4.251794e-03	ci left: 9.120233e-01	ci right 9.159216e-01	k: 73119	n:80000
KS ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
DUSP27   80000 perm   23 sec   (3478 perm/sec)   p_kst 1.250000e-05   p_cons 9.139875e-01   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 4.012537e-03	ci left: 9.119811e-01	ci right 9.156588e-01	k: 82245	n:90000
KS ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
DUSP27   90000 perm   26 sec   (3485 perm/sec)   p_kst 1.111111e-05   p_cons 9.138333e-01   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 3.985267e-03	ci left: 9.045073e-01	ci right 9.081291e-01	k: 90633	n:100000
KS ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
DUSP27   100000 perm   29 sec   (3460 perm/sec)   p_kst 1.000000e-05   p_cons 9.063300e-01   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 3.790284e-03	ci left: 9.050209e-01	ci right 9.084667e-01	k: 99743	n:110000
KS ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
DUSP27   110000 perm   32 sec   (3432 perm/sec)   p_kst 9.090909e-06   p_cons 9.067545e-01   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 3.795470e-03	ci left: 8.971637e-01	ci right 9.005836e-01	k: 107866	n:120000
KS ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
DUSP27   120000 perm   35 sec   (3406 perm/sec)   p_kst 8.333333e-06   p_cons 8.988833e-01   p_joint 0

Joint ci ratio: 3.919970e+00	ci left: 0	ci right 2.837559e-05	k: 0	n:130000
Cons ci ratio: 3.639590e-03	ci left: 8.975817e-01	ci right 9.008620e-01	k: 116900	n:130000
KS ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
DUSP27   130000 perm   38 sec   (3391 perm/sec)   p_kst 7.692308e-06   p_cons 8.992308e-01   p_joint 0

Joint ci ratio: 5.488078e-01	ci left: 2.650896e-04	ci right 4.708216e-04	k: 50	n:140000
Cons ci ratio: 3.510274e-03	ci left: 8.974817e-01	ci right 9.006447e-01	k: 125870	n:140000
KS ci ratio: 2.263181e+00	ci left: 1.730071e-06	ci right 5.160395e-05	k: 2	n:140000
DUSP27   140000 perm   42 sec   (3366 perm/sec)   p_kst 1.428571e-05   p_cons 8.990714e-01   p_joint 3.571429e-04

Joint ci ratio: 5.237325e-01	ci left: 2.762351e-04	ci right 4.772407e-04	k: 55	n:150000
Cons ci ratio: 3.389587e-03	ci left: 8.976251e-01	ci right 9.006794e-01	k: 134874	n:150000
KS ci ratio: 2.263183e+00	ci left: 1.614733e-06	ci right 4.816375e-05	k: 2	n:150000
DUSP27   150000 perm   45 sec   (3297 perm/sec)   p_kst 1.333333e-05   p_cons 8.991600e-01   p_joint 3.666667e-04

Joint ci ratio: 5.191226e-01	ci left: 2.643967e-04	ci right 4.544804e-04	k: 56	n:160000
Cons ci ratio: 3.282130e-03	ci left: 8.976641e-01	ci right 9.006214e-01	k: 143864	n:160000
KS ci ratio: 2.263185e+00	ci left: 1.513812e-06	ci right 4.515356e-05	k: 2	n:160000
DUSP27   160000 perm   49 sec   (3252 perm/sec)   p_kst 1.250000e-05   p_cons 8.991500e-01   p_joint 3.500000e-04

Joint ci ratio: 5.284856e-01	ci left: 2.386350e-04	ci right 4.144404e-04	k: 54	n:170000
Cons ci ratio: 3.185731e-03	ci left: 8.976170e-01	ci right 9.004870e-01	k: 152840	n:170000
KS ci ratio: 2.263186e+00	ci left: 1.424764e-06	ci right 4.249751e-05	k: 2	n:170000
DUSP27   170000 perm   53 sec   (3205 perm/sec)   p_kst 1.176471e-05   p_cons 8.990588e-01   p_joint 3.176471e-04

Joint ci ratio: 5.284905e-01	ci left: 2.253770e-04	ci right 3.914170e-04	k: 54	n:180000
Cons ci ratio: 3.090813e-03	ci left: 8.979621e-01	ci right 9.007473e-01	k: 161885	n:180000
KS ci ratio: 2.263188e+00	ci left: 1.345610e-06	ci right 4.013657e-05	k: 2	n:180000
DUSP27   180000 perm   57 sec   (3172 perm/sec)   p_kst 1.111111e-05   p_cons 8.993611e-01   p_joint 3.000000e-04

Joint ci ratio: 5.237535e-01	ci left: 2.180784e-04	ci right 3.767733e-04	k: 55	n:190000
Cons ci ratio: 3.002476e-03	ci left: 8.983564e-01	ci right 9.010630e-01	k: 170946	n:190000
KS ci ratio: 2.263189e+00	ci left: 1.274788e-06	ci right 3.802415e-05	k: 2	n:190000
DUSP27   190000 perm   61 sec   (3136 perm/sec)   p_kst 1.052632e-05   p_cons 8.997158e-01   p_joint 2.894737e-04

Joint ci ratio: 5.488384e-01	ci left: 1.855603e-04	ci right 3.295807e-04	k: 50	n:200000
Cons ci ratio: 2.925327e-03	ci left: 8.984607e-01	ci right 9.010977e-01	k: 179957	n:200000
KS ci ratio: 2.263190e+00	ci left: 1.211049e-06	ci right 3.612297e-05	k: 2	n:200000
DUSP27   200000 perm   65 sec   (3097 perm/sec)   p_kst 1.000000e-05   p_cons 8.997850e-01   p_joint 2.500000e-04

Joint ci ratio: 5.657373e-01	ci left: 1.644513e-04	ci right 2.976082e-04	k: 47	n:210000
Cons ci ratio: 2.852627e-03	ci left: 8.986324e-01	ci right 9.012042e-01	k: 188984	n:210000
KS ci ratio: 2.263192e+00	ci left: 1.153380e-06	ci right 3.440285e-05	k: 2	n:210000
DUSP27   210000 perm   69 sec   (3057 perm/sec)   p_kst 9.523810e-06   p_cons 8.999238e-01   p_joint 2.238095e-04

Joint ci ratio: 6.443884e-01	ci left: 1.146114e-04	ci right 2.265346e-04	k: 36	n:220000
Cons ci ratio: 2.787548e-03	ci left: 8.986292e-01	ci right 9.011421e-01	k: 197976	n:220000
KS ci ratio: 2.263192e+00	ci left: 1.100953e-06	ci right 3.283910e-05	k: 2	n:220000
DUSP27   220000 perm   73 sec   (3019 perm/sec)   p_kst 9.090909e-06   p_cons 8.998909e-01   p_joint 1.636364e-04

Joint ci ratio: 6.048126e-01	ci left: 1.279260e-04	ci right 2.418233e-04	k: 41	n:230000
Cons ci ratio: 2.727584e-03	ci left: 8.985700e-01	ci right 9.010286e-01	k: 206955	n:230000
KS ci ratio: 2.263193e+00	ci left: 1.053086e-06	ci right 3.141133e-05	k: 2	n:230000
DUSP27   230000 perm   77 sec   (2983 perm/sec)   p_kst 8.695652e-06   p_cons 8.998043e-01   p_joint 1.782609e-04

Joint ci ratio: 6.443930e-01	ci left: 1.050603e-04	ci right 2.076572e-04	k: 36	n:240000
Cons ci ratio: 2.668490e-03	ci left: 8.987091e-01	ci right 9.011146e-01	k: 215980	n:240000
KS ci ratio: 2.263194e+00	ci left: 1.009207e-06	ci right 3.010254e-05	k: 2	n:240000
DUSP27   240000 perm   81 sec   (2956 perm/sec)   p_kst 8.333333e-06   p_cons 8.999167e-01   p_joint 1.500000e-04

Joint ci ratio: 6.929189e-01	ci left: 8.425349e-05	ci right 1.760035e-04	k: 31	n:250000
Cons ci ratio: 2.618007e-03	ci left: 8.984957e-01	ci right 9.008550e-01	k: 224920	n:250000
KS ci ratio: 2.263195e+00	ci left: 9.688386e-07	ci right 2.889845e-05	k: 2	n:250000
DUSP27   250000 perm   86 sec   (2918 perm/sec)   p_kst 8.000000e-06   p_cons 8.996800e-01   p_joint 1.240000e-04

Joint ci ratio: 6.823398e-01	ci left: 8.418600e-05	ci right 1.737435e-04	k: 32	n:260000
Cons ci ratio: 2.565405e-03	ci left: 8.986433e-01	ci right 9.009555e-01	k: 233949	n:260000
KS ci ratio: 2.263196e+00	ci left: 9.315755e-07	ci right 2.778698e-05	k: 2	n:260000
DUSP27   260000 perm   90 sec   (2876 perm/sec)   p_kst 7.692308e-06   p_cons 8.998038e-01   p_joint 1.230769e-04

Joint ci ratio: 6.823414e-01	ci left: 8.106795e-05	ci right 1.673087e-04	k: 32	n:270000
Cons ci ratio: 2.516467e-03	ci left: 8.987357e-01	ci right 9.010038e-01	k: 242966	n:270000
KS ci ratio: 2.263196e+00	ci left: 8.970727e-07	ci right 2.675784e-05	k: 2	n:270000
DUSP27   270000 perm   95 sec   (2834 perm/sec)   p_kst 7.407407e-06   p_cons 8.998741e-01   p_joint 1.185185e-04

Joint ci ratio: 6.722324e-01	ci left: 8.112878e-05	ci right 1.655113e-04	k: 33	n:280000
Cons ci ratio: 2.471745e-03	ci left: 8.987106e-01	ci right 9.009383e-01	k: 251952	n:280000
KS ci ratio: 2.263197e+00	ci left: 8.650343e-07	ci right 2.580222e-05	k: 2	n:280000
DUSP27   280000 perm   100 sec   (2799 perm/sec)   p_kst 7.142857e-06   p_cons 8.998286e-01   p_joint 1.178571e-04

Joint ci ratio: 6.722339e-01	ci left: 7.833119e-05	ci right 1.598041e-04	k: 33	n:290000
Cons ci ratio: 2.425793e-03	ci left: 8.989509e-01	ci right 9.011376e-01	k: 261014	n:290000
KS ci ratio: 2.263197e+00	ci left: 8.352055e-07	ci right 2.491249e-05	k: 2	n:290000
DUSP27   290000 perm   105 sec   (2771 perm/sec)   p_kst 6.896552e-06   p_cons 9.000483e-01   p_joint 1.137931e-04

Joint ci ratio: 6.625612e-01	ci left: 7.848786e-05	ci right 1.583684e-04	k: 34	n:300000
Cons ci ratio: 2.383627e-03	ci left: 8.990750e-01	ci right 9.012239e-01	k: 270046	n:300000
KS ci ratio: 2.263198e+00	ci left: 8.073653e-07	ci right 2.408208e-05	k: 2	n:300000
DUSP27   300000 perm   109 sec   (2740 perm/sec)   p_kst 6.666667e-06   p_cons 9.001533e-01   p_joint 1.133333e-04

Joint ci ratio: 6.625625e-01	ci left: 7.595596e-05	ci right 1.532599e-04	k: 34	n:310000
Cons ci ratio: 2.345519e-03	ci left: 8.990423e-01	ci right 9.011567e-01	k: 279032	n:310000
KS ci ratio: 2.263198e+00	ci left: 7.813212e-07	ci right 2.330525e-05	k: 2	n:310000
DUSP27   310000 perm   114 sec   (2713 perm/sec)   p_kst 6.451613e-06   p_cons 9.001032e-01   p_joint 1.096774e-04

Joint ci ratio: 6.625637e-01	ci left: 7.358230e-05	ci right 1.484706e-04	k: 34	n:320000
Cons ci ratio: 2.309944e-03	ci left: 8.989522e-01	ci right 9.010343e-01	k: 287999	n:320000
KS ci ratio: 2.263199e+00	ci left: 7.569049e-07	ci right 2.257696e-05	k: 2	n:320000
DUSP27   320000 perm   119 sec   (2687 perm/sec)   p_kst 6.250000e-06   p_cons 8.999969e-01   p_joint 1.062500e-04

Joint ci ratio: 6.625648e-01	ci left: 7.135250e-05	ci right 1.439716e-04	k: 34	n:330000
Cons ci ratio: 2.274099e-03	ci left: 8.990140e-01	ci right 9.010638e-01	k: 297014	n:330000
KS ci ratio: 2.263199e+00	ci left: 7.339684e-07	ci right 2.189282e-05	k: 2	n:330000
DUSP27   330000 perm   124 sec   (2661 perm/sec)   p_kst 6.060606e-06   p_cons 9.000424e-01   p_joint 1.030303e-04

Joint ci ratio: 7.839700e-01	ci left: 4.522772e-05	ci right 1.050279e-04	k: 24	n:340000
Cons ci ratio: 2.241081e-03	ci left: 8.989749e-01	ci right 9.009947e-01	k: 305996	n:340000
KS ci ratio: 2.263200e+00	ci left: 7.123810e-07	ci right 2.124892e-05	k: 2	n:340000
DUSP27   340000 perm   129 sec   (2636 perm/sec)   p_kst 5.882353e-06   p_cons 8.999882e-01   p_joint 7.058824e-05

Joint ci ratio: 7.687456e-01	ci left: 4.622532e-05	ci right 1.054409e-04	k: 25	n:350000
Cons ci ratio: 2.208198e-03	ci left: 8.990416e-01	ci right 9.010318e-01	k: 315014	n:350000
KS ci ratio: 2.263200e+00	ci left: 6.920273e-07	ci right 2.064181e-05	k: 2	n:350000
DUSP27   350000 perm   134 sec   (2608 perm/sec)   p_kst 5.714286e-06   p_cons 9.000400e-01   p_joint 7.142857e-05

Joint ci ratio: 7.543750e-01	ci left: 4.717848e-05	ci right 1.058205e-04	k: 26	n:360000
Cons ci ratio: 2.174803e-03	ci left: 8.992637e-01	ci right 9.012243e-01	k: 324089	n:360000
KS ci ratio: 2.263200e+00	ci left: 6.728043e-07	ci right 2.006843e-05	k: 2	n:360000
DUSP27   360000 perm   139 sec   (2585 perm/sec)   p_kst 5.555556e-06   p_cons 9.002472e-01   p_joint 7.222222e-05

Joint ci ratio: 7.278962e-01	ci left: 5.028651e-05	ci right 1.093706e-04	k: 28	n:370000
Cons ci ratio: 2.145744e-03	ci left: 8.992324e-01	ci right 9.011667e-01	k: 333075	n:370000
KS ci ratio: 2.263201e+00	ci left: 6.546203e-07	ci right 1.952605e-05	k: 2	n:370000
DUSP27   370000 perm   145 sec   (2558 perm/sec)   p_kst 5.405405e-06   p_cons 9.002027e-01   p_joint 7.567568e-05

Joint ci ratio: 7.156616e-01	ci left: 5.111046e-05	ci right 1.096004e-04	k: 29	n:380000
Cons ci ratio: 2.117013e-03	ci left: 8.992717e-01	ci right 9.011801e-01	k: 342087	n:380000
KS ci ratio: 2.263201e+00	ci left: 6.373935e-07	ci right 1.901221e-05	k: 2	n:380000
DUSP27   380000 perm   150 sec   (2535 perm/sec)   p_kst 5.263158e-06   p_cons 9.002289e-01   p_joint 7.631579e-05

Joint ci ratio: 7.040239e-01	ci left: 5.190026e-05	ci right 1.098107e-04	k: 30	n:390000
Cons ci ratio: 2.091850e-03	ci left: 8.990980e-01	ci right 9.009833e-01	k: 351017	n:390000
KS ci ratio: 2.263201e+00	ci left: 6.210500e-07	ci right 1.852472e-05	k: 2	n:390000
DUSP27   390000 perm   155 sec   (2512 perm/sec)   p_kst 5.128205e-06   p_cons 9.000436e-01   p_joint 7.692308e-05

Joint ci ratio: 7.278984e-01	ci left: 4.651498e-05	ci right 1.011679e-04	k: 28	n:400000
Cons ci ratio: 2.063999e-03	ci left: 8.992444e-01	ci right 9.011048e-01	k: 360071	n:400000
KS ci ratio: 2.263202e+00	ci left: 6.055238e-07	ci right 1.806160e-05	k: 2	n:400000
DUSP27   400000 perm   161 sec   (2490 perm/sec)   p_kst 5.000000e-06   p_cons 9.001775e-01   p_joint 7.000000e-05

Joint ci ratio: 7.839751e-01	ci left: 3.750584e-05	ci right 8.709656e-05	k: 24	n:410000
Cons ci ratio: 2.039662e-03	ci left: 8.991683e-01	ci right 9.010066e-01	k: 369037	n:410000
KS ci ratio: 2.263202e+00	ci left: 5.907549e-07	ci right 1.762108e-05	k: 2	n:410000
DUSP27   410000 perm   166 sec   (2466 perm/sec)   p_kst 4.878049e-06   p_cons 9.000902e-01   p_joint 5.853659e-05

Joint ci ratio: 7.040260e-01	ci left: 4.819306e-05	ci right 1.019672e-04	k: 30	n:420000
Cons ci ratio: 1.929710e-03	ci left: 9.067441e-01	ci right 9.084979e-01	k: 381202	n:420000
KS ci ratio: 2.263202e+00	ci left: 5.766893e-07	ci right 1.720153e-05	k: 2	n:420000
DUSP27   420000 perm   173 sec   (2433 perm/sec)   p_kst 4.761905e-06   p_cons 9.076238e-01   p_joint 7.142857e-05

Joint ci ratio: 7.040266e-01	ci left: 4.707228e-05	ci right 9.959588e-05	k: 30	n:430000
Cons ci ratio: 1.907330e-03	ci left: 9.067375e-01	ci right 9.084709e-01	k: 390271	n:430000
KS ci ratio: 2.263203e+00	ci left: 5.632779e-07	ci right 1.680150e-05	k: 2	n:430000
DUSP27   430000 perm   179 sec   (2406 perm/sec)   p_kst 4.651163e-06   p_cons 9.076070e-01   p_joint 6.976744e-05

Joint ci ratio: 7.040272e-01	ci left: 4.600244e-05	ci right 9.733237e-05	k: 30	n:440000
Cons ci ratio: 1.886810e-03	ci left: 9.066332e-01	ci right 9.083477e-01	k: 399297	n:440000
KS ci ratio: 2.263203e+00	ci left: 5.504761e-07	ci right 1.641965e-05	k: 2	n:440000
DUSP27   440000 perm   185 sec   (2384 perm/sec)   p_kst 4.545455e-06   p_cons 9.074932e-01   p_joint 6.818182e-05

Joint ci ratio: 7.156662e-01	ci left: 4.315987e-05	ci right 9.255167e-05	k: 29	n:450000
Cons ci ratio: 1.864862e-03	ci left: 9.067211e-01	ci right 9.084158e-01	k: 408407	n:450000
KS ci ratio: 2.263203e+00	ci left: 5.382433e-07	ci right 1.605477e-05	k: 2	n:450000
DUSP27   450000 perm   191 sec   (2354 perm/sec)   p_kst 4.444444e-06   p_cons 9.075711e-01   p_joint 6.444444e-05

Joint ci ratio: 8.001449e-01	ci left: 3.169597e-05	ci right 7.502361e-05	k: 23	n:460000
Cons ci ratio: 1.844114e-03	ci left: 9.067639e-01	ci right 9.084397e-01	k: 417498	n:460000
KS ci ratio: 2.263203e+00	ci left: 5.265423e-07	ci right 1.570575e-05	k: 2	n:460000
DUSP27   460000 perm   198 sec   (2325 perm/sec)   p_kst 4.347826e-06   p_cons 9.076043e-01   p_joint 5.000000e-05

Joint ci ratio: 8.001454e-01	ci left: 3.102158e-05	ci right 7.342738e-05	k: 23	n:470000
Cons ci ratio: 1.824576e-03	ci left: 9.067557e-01	ci right 9.084137e-01	k: 426566	n:470000
KS ci ratio: 2.263203e+00	ci left: 5.153393e-07	ci right 1.537159e-05	k: 2	n:470000
DUSP27   470000 perm   204 sec   (2306 perm/sec)   p_kst 4.255319e-06   p_cons 9.075872e-01   p_joint 4.893617e-05

Joint ci ratio: 1.047648e+00	ci left: 1.442081e-05	ci right 4.631288e-05	k: 13	n:480000
Cons ci ratio: 1.806319e-03	ci left: 9.066852e-01	ci right 9.083265e-01	k: 435604	n:480000
KS ci ratio: 2.263204e+00	ci left: 5.046031e-07	ci right 1.505135e-05	k: 2	n:480000
DUSP27   480000 perm   210 sec   (2283 perm/sec)   p_kst 4.166667e-06   p_cons 9.075083e-01   p_joint 2.708333e-05

Joint ci ratio: 1.047648e+00	ci left: 1.412651e-05	ci right 4.536773e-05	k: 13	n:490000
Cons ci ratio: 1.787555e-03	ci left: 9.067161e-01	ci right 9.083403e-01	k: 444690	n:490000
KS ci ratio: 2.263204e+00	ci left: 4.943050e-07	ci right 1.474418e-05	k: 2	n:490000
DUSP27   490000 perm   217 sec   (2261 perm/sec)   p_kst 4.081633e-06   p_cons 9.075306e-01   p_joint 2.653061e-05

Joint ci ratio: 1.047648e+00	ci left: 1.384398e-05	ci right 4.446038e-05	k: 13	n:500000
Cons ci ratio: 1.769595e-03	ci left: 9.067237e-01	ci right 9.083316e-01	k: 453765	n:500000
KS ci ratio: 2.263204e+00	ci left: 4.844189e-07	ci right 1.444930e-05	k: 2	n:500000
DUSP27   500000 perm   223 sec   (2241 perm/sec)   p_kst 4.000000e-06   p_cons 9.075300e-01   p_joint 2.600000e-05

Joint ci ratio: 1.087197e+00	ci left: 1.215805e-05	ci right 4.110079e-05	k: 12	n:510000
Cons ci ratio: 1.752146e-03	ci left: 9.067330e-01	ci right 9.083251e-01	k: 462841	n:510000
KS ci ratio: 2.263204e+00	ci left: 4.749205e-07	ci right 1.416598e-05	k: 2	n:510000
DUSP27   510000 perm   229 sec   (2223 perm/sec)   p_kst 3.921569e-06   p_cons 9.075314e-01   p_joint 2.352941e-05

Joint ci ratio: 1.087198e+00	ci left: 1.192424e-05	ci right 4.031039e-05	k: 12	n:520000
Cons ci ratio: 1.734964e-03	ci left: 9.067653e-01	ci right 9.083417e-01	k: 471929	n:520000
KS ci ratio: 2.263204e+00	ci left: 4.657874e-07	ci right 1.389356e-05	k: 2	n:520000
DUSP27   520000 perm   236 sec   (2201 perm/sec)   p_kst 3.846154e-06   p_cons 9.075558e-01   p_joint 2.307692e-05

Joint ci ratio: 1.047649e+00	ci left: 1.306035e-05	ci right 4.194378e-05	k: 13	n:530000
Cons ci ratio: 1.718007e-03	ci left: 9.068229e-01	ci right 9.083840e-01	k: 481031	n:530000
KS ci ratio: 2.263205e+00	ci left: 4.569990e-07	ci right 1.363142e-05	k: 2	n:530000
DUSP27   530000 perm   244 sec   (2173 perm/sec)   p_kst 3.773585e-06   p_cons 9.076057e-01   p_joint 2.452830e-05

Joint ci ratio: 1.012125e+00	ci left: 1.417402e-05	ci right 4.349892e-05	k: 14	n:540000
Cons ci ratio: 1.703116e-03	ci left: 9.067223e-01	ci right 9.082697e-01	k: 490049	n:540000
KS ci ratio: 2.263205e+00	ci left: 4.485360e-07	ci right 1.337899e-05	k: 2	n:540000
DUSP27   540000 perm   251 sec   (2152 perm/sec)   p_kst 3.703704e-06   p_cons 9.074981e-01   p_joint 2.592593e-05

Joint ci ratio: 1.012125e+00	ci left: 1.391630e-05	ci right 4.270803e-05	k: 14	n:550000
Cons ci ratio: 1.687287e-03	ci left: 9.067568e-01	ci right 9.082898e-01	k: 499139	n:550000
KS ci ratio: 2.263205e+00	ci left: 4.403808e-07	ci right 1.313573e-05	k: 2	n:550000
DUSP27   550000 perm   258 sec   (2130 perm/sec)   p_kst 3.636364e-06   p_cons 9.075255e-01   p_joint 2.545455e-05

Joint ci ratio: 1.012125e+00	ci left: 1.366780e-05	ci right 4.194540e-05	k: 14	n:560000
Cons ci ratio: 1.671856e-03	ci left: 9.067937e-01	ci right 9.083128e-01	k: 508231	n:560000
KS ci ratio: 2.263205e+00	ci left: 4.325169e-07	ci right 1.290117e-05	k: 2	n:560000
DUSP27   560000 perm   265 sec   (2109 perm/sec)   p_kst 3.571429e-06   p_cons 9.075554e-01   p_joint 2.500000e-05

Joint ci ratio: 1.012125e+00	ci left: 1.342801e-05	ci right 4.120952e-05	k: 14	n:570000
Cons ci ratio: 1.656980e-03	ci left: 9.068153e-01	ci right 9.083209e-01	k: 517315	n:570000
KS ci ratio: 2.263205e+00	ci left: 4.249288e-07	ci right 1.267483e-05	k: 2	n:570000
DUSP27   570000 perm   273 sec   (2087 perm/sec)   p_kst 3.508772e-06   p_cons 9.075702e-01   p_joint 2.456140e-05

Joint ci ratio: 8.357302e-01	ci left: 2.241277e-05	ci right 5.534556e-05	k: 21	n:580000
Cons ci ratio: 1.641750e-03	ci left: 9.069124e-01	ci right 9.084042e-01	k: 526443	n:580000
KS ci ratio: 2.771851e+00	ci left: 4.365139e-08	ci right 9.606244e-06	k: 1	n:580000
DUSP27   580000 perm   280 sec   (2070 perm/sec)   p_kst 1.724138e-06   p_cons 9.076603e-01   p_joint 3.620690e-05

Joint ci ratio: 8.001497e-01	ci left: 2.471207e-05	ci right 5.849315e-05	k: 23	n:590000
Cons ci ratio: 1.627573e-03	ci left: 9.069399e-01	ci right 9.084188e-01	k: 535532	n:590000
KS ci ratio: 2.771852e+00	ci left: 4.291154e-08	ci right 9.443427e-06	k: 1	n:590000
DUSP27   590000 perm   287 sec   (2054 perm/sec)   p_kst 1.694915e-06   p_cons 9.076814e-01   p_joint 3.898305e-05

Joint ci ratio: 8.001500e-01	ci left: 2.430020e-05	ci right 5.751827e-05	k: 23	n:600000
Cons ci ratio: 1.612874e-03	ci left: 9.070585e-01	ci right 9.085243e-01	k: 544676	n:600000
KS ci ratio: 2.771852e+00	ci left: 4.219635e-08	ci right 9.286037e-06	k: 1	n:600000
DUSP27   600000 perm   295 sec   (2035 perm/sec)   p_kst 1.666667e-06   p_cons 9.077933e-01   p_joint 3.833333e-05

Joint ci ratio: 8.001503e-01	ci left: 2.390183e-05	ci right 5.657536e-05	k: 23	n:610000
Cons ci ratio: 1.599269e-03	ci left: 9.070992e-01	ci right 9.085527e-01	k: 553775	n:610000
KS ci ratio: 2.771852e+00	ci left: 4.150460e-08	ci right 9.133807e-06	k: 1	n:610000
DUSP27   610000 perm   302 sec   (2019 perm/sec)   p_kst 1.639344e-06   p_cons 9.078279e-01   p_joint 3.770492e-05

Joint ci ratio: 8.001505e-01	ci left: 2.351631e-05	ci right 5.566286e-05	k: 23	n:620000
Cons ci ratio: 1.585758e-03	ci left: 9.071646e-01	ci right 9.086058e-01	k: 562890	n:620000
KS ci ratio: 2.771852e+00	ci left: 4.083517e-08	ci right 8.986488e-06	k: 1	n:620000
DUSP27   620000 perm   310 sec   (2000 perm/sec)   p_kst 1.612903e-06   p_cons 9.078871e-01   p_joint 3.709677e-05

Joint ci ratio: 8.001508e-01	ci left: 2.314304e-05	ci right 5.477933e-05	k: 23	n:630000
Cons ci ratio: 1.572329e-03	ci left: 9.072550e-01	ci right 9.086841e-01	k: 572022	n:630000
KS ci ratio: 2.771852e+00	ci left: 4.018700e-08	ci right 8.843846e-06	k: 1	n:630000
DUSP27   630000 perm   318 sec   (1984 perm/sec)   p_kst 1.587302e-06   p_cons 9.079714e-01   p_joint 3.650794e-05

Joint ci ratio: 8.001510e-01	ci left: 2.278142e-05	ci right 5.392341e-05	k: 23	n:640000
Cons ci ratio: 1.559963e-03	ci left: 9.072642e-01	ci right 9.086821e-01	k: 581104	n:640000
KS ci ratio: 2.771852e+00	ci left: 3.955907e-08	ci right 8.705662e-06	k: 1	n:640000
DUSP27   640000 perm   325 sec   (1968 perm/sec)   p_kst 1.562500e-06   p_cons 9.079750e-01   p_joint 3.593750e-05

Joint ci ratio: 8.001513e-01	ci left: 2.243094e-05	ci right 5.309383e-05	k: 23	n:650000
Cons ci ratio: 1.547799e-03	ci left: 9.072824e-01	ci right 9.086893e-01	k: 590192	n:650000
KS ci ratio: 2.771852e+00	ci left: 3.895047e-08	ci right 8.571729e-06	k: 1	n:650000
DUSP27   650000 perm   333 sec   (1954 perm/sec)   p_kst 1.538462e-06   p_cons 9.079877e-01   p_joint 3.538462e-05

Joint ci ratio: 8.001515e-01	ci left: 2.209107e-05	ci right 5.228938e-05	k: 23	n:660000
Cons ci ratio: 1.535985e-03	ci left: 9.072926e-01	ci right 9.086887e-01	k: 599275	n:660000
KS ci ratio: 2.771852e+00	ci left: 3.836031e-08	ci right 8.441855e-06	k: 1	n:660000
DUSP27   660000 perm   341 sec   (1936 perm/sec)   p_kst 1.515152e-06   p_cons 9.079924e-01   p_joint 3.484848e-05

Joint ci ratio: 8.001517e-01	ci left: 2.176135e-05	ci right 5.150895e-05	k: 23	n:670000
Cons ci ratio: 1.524873e-03	ci left: 9.072545e-01	ci right 9.086405e-01	k: 608326	n:670000
KS ci ratio: 2.771852e+00	ci left: 3.778777e-08	ci right 8.315857e-06	k: 1	n:670000
DUSP27   670000 perm   348 sec   (1924 perm/sec)   p_kst 1.492537e-06   p_cons 9.079493e-01   p_joint 3.432836e-05

Joint ci ratio: 8.001519e-01	ci left: 2.144133e-05	ci right 5.075147e-05	k: 23	n:680000
Cons ci ratio: 1.513612e-03	ci left: 9.072604e-01	ci right 9.086361e-01	k: 617406	n:680000
KS ci ratio: 2.771852e+00	ci left: 3.723207e-08	ci right 8.193566e-06	k: 1	n:680000
DUSP27   680000 perm   356 sec   (1910 perm/sec)   p_kst 1.470588e-06   p_cons 9.079500e-01   p_joint 3.382353e-05

Joint ci ratio: 7.839852e-01	ci left: 2.228600e-05	ci right 5.175333e-05	k: 24	n:690000
Cons ci ratio: 1.502324e-03	ci left: 9.072967e-01	ci right 9.086622e-01	k: 626507	n:690000
KS ci ratio: 2.771853e+00	ci left: 3.669247e-08	ci right 8.074819e-06	k: 1	n:690000
DUSP27   690000 perm   365 sec   (1892 perm/sec)   p_kst 1.449275e-06   p_cons 9.079812e-01   p_joint 3.478261e-05

Joint ci ratio: 7.687604e-01	ci left: 2.311253e-05	ci right 5.272088e-05	k: 25	n:700000
Cons ci ratio: 1.491629e-03	ci left: 9.072933e-01	ci right 9.086490e-01	k: 635581	n:700000
KS ci ratio: 2.771853e+00	ci left: 3.616830e-08	ci right 7.959465e-06	k: 1	n:700000
DUSP27   700000 perm   374 sec   (1873 perm/sec)   p_kst 1.428571e-06   p_cons 9.079729e-01   p_joint 3.571429e-05

Joint ci ratio: 7.687606e-01	ci left: 2.278700e-05	ci right 5.197834e-05	k: 25	n:710000
Cons ci ratio: 1.480272e-03	ci left: 9.073903e-01	ci right 9.087359e-01	k: 644726	n:710000
KS ci ratio: 2.771853e+00	ci left: 3.565888e-08	ci right 7.847360e-06	k: 1	n:710000
DUSP27   710000 perm   382 sec   (1859 perm/sec)   p_kst 1.408451e-06   p_cons 9.080648e-01   p_joint 3.521127e-05

Joint ci ratio: 7.687608e-01	ci left: 2.247051e-05	ci right 5.125643e-05	k: 25	n:720000
Cons ci ratio: 1.470514e-03	ci left: 9.073315e-01	ci right 9.086680e-01	k: 653761	n:720000
KS ci ratio: 2.771853e+00	ci left: 3.516362e-08	ci right 7.738369e-06	k: 1	n:720000
DUSP27   720000 perm   390 sec   (1846 perm/sec)   p_kst 1.388889e-06   p_cons 9.080014e-01   p_joint 3.472222e-05

Joint ci ratio: 8.001529e-01	ci left: 1.997274e-05	ci right 4.727537e-05	k: 23	n:730000
Cons ci ratio: 1.460539e-03	ci left: 9.073209e-01	ci right 9.086484e-01	k: 662830	n:730000
KS ci ratio: 2.771853e+00	ci left: 3.468193e-08	ci right 7.632364e-06	k: 1	n:730000
DUSP27   730000 perm   398 sec   (1833 perm/sec)   p_kst 1.369863e-06   p_cons 9.079863e-01   p_joint 3.150685e-05

Joint ci ratio: 7.839862e-01	ci left: 2.078018e-05	ci right 4.825651e-05	k: 24	n:740000
Cons ci ratio: 1.449990e-03	ci left: 9.074002e-01	ci right 9.087182e-01	k: 671965	n:740000
KS ci ratio: 2.771853e+00	ci left: 3.421325e-08	ci right 7.529225e-06	k: 1	n:740000
DUSP27   740000 perm   407 sec   (1819 perm/sec)   p_kst 1.351351e-06   p_cons 9.080608e-01   p_joint 3.243243e-05

Joint ci ratio: 7.687614e-01	ci left: 2.157169e-05	ci right 4.920619e-05	k: 25	n:750000
Cons ci ratio: 1.439930e-03	ci left: 9.074466e-01	ci right 9.087555e-01	k: 681077	n:750000
KS ci ratio: 2.771853e+00	ci left: 3.375708e-08	ci right 7.428835e-06	k: 1	n:750000
DUSP27   750000 perm   415 sec   (1806 perm/sec)   p_kst 1.333333e-06   p_cons 9.081027e-01   p_joint 3.333333e-05

Joint ci ratio: 7.687616e-01	ci left: 2.128785e-05	ci right 4.855874e-05	k: 25	n:760000
Cons ci ratio: 1.430189e-03	ci left: 9.074787e-01	ci right 9.087787e-01	k: 690179	n:760000
KS ci ratio: 2.771853e+00	ci left: 3.331290e-08	ci right 7.331088e-06	k: 1	n:760000
DUSP27   760000 perm   424 sec   (1791 perm/sec)   p_kst 1.315789e-06   p_cons 9.081303e-01   p_joint 3.289474e-05

Joint ci ratio: 7.687618e-01	ci left: 2.101138e-05	ci right 4.792811e-05	k: 25	n:770000
Cons ci ratio: 1.421339e-03	ci left: 9.074278e-01	ci right 9.087198e-01	k: 699218	n:770000
KS ci ratio: 2.771853e+00	ci left: 3.288027e-08	ci right 7.235879e-06	k: 1	n:770000
DUSP27   770000 perm   433 sec   (1777 perm/sec)   p_kst 1.298701e-06   p_cons 9.080753e-01   p_joint 3.246753e-05

Joint ci ratio: 7.543908e-01	ci left: 2.177455e-05	ci right 4.884068e-05	k: 26	n:780000
Cons ci ratio: 1.411881e-03	ci left: 9.074696e-01	ci right 9.087530e-01	k: 708328	n:780000
KS ci ratio: 2.771853e+00	ci left: 3.245873e-08	ci right 7.143112e-06	k: 1	n:780000
DUSP27   780000 perm   442 sec   (1763 perm/sec)   p_kst 1.282051e-06   p_cons 9.081128e-01   p_joint 3.333333e-05

Joint ci ratio: 7.407968e-01	ci left: 2.252312e-05	ci right 4.972567e-05	k: 27	n:790000
Cons ci ratio: 1.402514e-03	ci left: 9.075218e-01	ci right 9.087967e-01	k: 717447	n:790000
KS ci ratio: 2.771853e+00	ci left: 3.204786e-08	ci right 7.052693e-06	k: 1	n:790000
DUSP27   790000 perm   452 sec   (1749 perm/sec)   p_kst 1.265823e-06   p_cons 9.081608e-01   p_joint 3.417722e-05

Joint ci ratio: 1.181916e+00	ci left: 5.994252e-06	ci right 2.298782e-05	k: 10	n:800000
Cons ci ratio: 1.393654e-03	ci left: 9.075338e-01	ci right 9.088007e-01	k: 726535	n:800000
KS ci ratio: 2.771853e+00	ci left: 3.164726e-08	ci right 6.964534e-06	k: 1	n:800000
DUSP27   800000 perm   461 sec   (1736 perm/sec)   p_kst 1.250000e-06   p_cons 9.081687e-01   p_joint 1.250000e-05

Joint ci ratio: 1.181916e+00	ci left: 5.920248e-06	ci right 2.270403e-05	k: 10	n:810000
Cons ci ratio: 1.385339e-03	ci left: 9.074998e-01	ci right 9.087590e-01	k: 735586	n:810000
KS ci ratio: 2.771853e+00	ci left: 3.125655e-08	ci right 6.878553e-06	k: 1	n:810000
DUSP27   810000 perm   470 sec   (1724 perm/sec)   p_kst 1.234568e-06   p_cons 9.081309e-01   p_joint 1.234568e-05

Joint ci ratio: 1.181916e+00	ci left: 5.848050e-06	ci right 2.242715e-05	k: 10	n:820000
Cons ci ratio: 1.376466e-03	ci left: 9.075522e-01	ci right 9.088035e-01	k: 744707	n:820000
KS ci ratio: 2.771854e+00	ci left: 3.087538e-08	ci right 6.794668e-06	k: 1	n:820000
DUSP27   820000 perm   479 sec   (1710 perm/sec)   p_kst 1.219512e-06   p_cons 9.081793e-01   p_joint 1.219512e-05

Joint ci ratio: 1.181916e+00	ci left: 5.777591e-06	ci right 2.215694e-05	k: 10	n:830000
Cons ci ratio: 1.367514e-03	ci left: 9.076336e-01	ci right 9.088768e-01	k: 753853	n:830000
KS ci ratio: 2.771854e+00	ci left: 3.050338e-08	ci right 6.712805e-06	k: 1	n:830000
DUSP27   830000 perm   489 sec   (1698 perm/sec)   p_kst 1.204819e-06   p_cons 9.082566e-01   p_joint 1.204819e-05

Joint ci ratio: 1.181916e+00	ci left: 5.708810e-06	ci right 2.189317e-05	k: 10	n:840000
Cons ci ratio: 1.359258e-03	ci left: 9.076486e-01	ci right 9.088843e-01	k: 762945	n:840000
KS ci ratio: 2.771854e+00	ci left: 3.014025e-08	ci right 6.632891e-06	k: 1	n:840000
DUSP27   840000 perm   498 sec   (1685 perm/sec)   p_kst 1.190476e-06   p_cons 9.082679e-01   p_joint 1.190476e-05

Joint ci ratio: 1.131598e+00	ci left: 6.460206e-06	ci right 2.315522e-05	k: 11	n:850000
Cons ci ratio: 1.351331e-03	ci left: 9.076408e-01	ci right 9.088693e-01	k: 772018	n:850000
KS ci ratio: 2.771854e+00	ci left: 2.978566e-08	ci right 6.554857e-06	k: 1	n:850000
DUSP27   850000 perm   509 sec   (1671 perm/sec)   p_kst 1.176471e-06   p_cons 9.082565e-01   p_joint 1.294118e-05

Joint ci ratio: 1.131598e+00	ci left: 6.385087e-06	ci right 2.288598e-05	k: 11	n:860000
Cons ci ratio: 1.343138e-03	ci left: 9.076834e-01	ci right 9.089045e-01	k: 781134	n:860000
KS ci ratio: 2.771854e+00	ci left: 2.943931e-08	ci right 6.478638e-06	k: 1	n:860000
DUSP27   860000 perm   518 sec   (1660 perm/sec)   p_kst 1.162791e-06   p_cons 9.082953e-01   p_joint 1.279070e-05

Joint ci ratio: 1.131598e+00	ci left: 6.311695e-06	ci right 2.262292e-05	k: 11	n:870000
Cons ci ratio: 1.335359e-03	ci left: 9.076916e-01	ci right 9.089057e-01	k: 790221	n:870000
KS ci ratio: 2.771854e+00	ci left: 2.910093e-08	ci right 6.404171e-06	k: 1	n:870000
DUSP27   870000 perm   528 sec   (1647 perm/sec)   p_kst 1.149425e-06   p_cons 9.083000e-01   p_joint 1.264368e-05

Joint ci ratio: 1.087204e+00	ci left: 7.046127e-06	ci right 2.381986e-05	k: 12	n:880000
Cons ci ratio: 1.327832e-03	ci left: 9.076848e-01	ci right 9.088920e-01	k: 799295	n:880000
KS ci ratio: 2.771854e+00	ci left: 2.877024e-08	ci right 6.331396e-06	k: 1	n:880000
DUSP27   880000 perm   538 sec   (1635 perm/sec)   p_kst 1.136364e-06   p_cons 9.082898e-01   p_joint 1.363636e-05

Joint ci ratio: 1.087204e+00	ci left: 6.966957e-06	ci right 2.355222e-05	k: 12	n:890000
Cons ci ratio: 1.320359e-03	ci left: 9.076873e-01	ci right 9.088876e-01	k: 808377	n:890000
KS ci ratio: 2.771854e+00	ci left: 2.844697e-08	ci right 6.260257e-06	k: 1	n:890000
DUSP27   890000 perm   548 sec   (1623 perm/sec)   p_kst 1.123596e-06   p_cons 9.082888e-01   p_joint 1.348315e-05

Joint ci ratio: 1.087204e+00	ci left: 6.889546e-06	ci right 2.329053e-05	k: 12	n:900000
Cons ci ratio: 1.312678e-03	ci left: 9.077320e-01	ci right 9.089254e-01	k: 817497	n:900000
KS ci ratio: 2.771854e+00	ci left: 2.813090e-08	ci right 6.190699e-06	k: 1	n:900000
DUSP27   900000 perm   558 sec   (1612 perm/sec)   p_kst 1.111111e-06   p_cons 9.083300e-01   p_joint 1.333333e-05

Joint ci ratio: 1.087204e+00	ci left: 6.813837e-06	ci right 2.303460e-05	k: 12	n:910000
Cons ci ratio: 1.305233e-03	ci left: 9.077625e-01	ci right 9.089492e-01	k: 826605	n:910000
KS ci ratio: 2.771854e+00	ci left: 2.782177e-08	ci right 6.122670e-06	k: 1	n:910000
DUSP27   910000 perm   568 sec   (1602 perm/sec)   p_kst 1.098901e-06   p_cons 9.083571e-01   p_joint 1.318681e-05

Joint ci ratio: 1.087204e+00	ci left: 6.739773e-06	ci right 2.278422e-05	k: 12	n:920000
Cons ci ratio: 1.298184e-03	ci left: 9.077575e-01	ci right 9.089378e-01	k: 835681	n:920000
KS ci ratio: 2.771854e+00	ci left: 2.751936e-08	ci right 6.056119e-06	k: 1	n:920000
DUSP27   920000 perm   577 sec   (1593 perm/sec)   p_kst 1.086957e-06   p_cons 9.083489e-01   p_joint 1.304348e-05

Joint ci ratio: 1.131599e+00	ci left: 5.904488e-06	ci right 2.116338e-05	k: 11	n:930000
Cons ci ratio: 1.291090e-03	ci left: 9.077731e-01	ci right 9.089469e-01	k: 844776	n:930000
KS ci ratio: 2.771854e+00	ci left: 2.722345e-08	ci right 5.991000e-06	k: 1	n:930000
DUSP27   930000 perm   587 sec   (1583 perm/sec)   p_kst 1.075269e-06   p_cons 9.083613e-01   p_joint 1.182796e-05

Joint ci ratio: 1.131599e+00	ci left: 5.841674e-06	ci right 2.093824e-05	k: 11	n:940000
Cons ci ratio: 1.283921e-03	ci left: 9.078129e-01	ci right 9.089803e-01	k: 853894	n:940000
KS ci ratio: 2.771854e+00	ci left: 2.693384e-08	ci right 5.927266e-06	k: 1	n:940000
DUSP27   940000 perm   597 sec   (1573 perm/sec)   p_kst 1.063830e-06   p_cons 9.083979e-01   p_joint 1.170213e-05

Joint ci ratio: 1.131599e+00	ci left: 5.780183e-06	ci right 2.071784e-05	k: 11	n:950000
Cons ci ratio: 1.277162e-03	ci left: 9.078139e-01	ci right 9.089751e-01	k: 862976	n:950000
KS ci ratio: 2.771854e+00	ci left: 2.665032e-08	ci right 5.864874e-06	k: 1	n:950000
DUSP27   950000 perm   608 sec   (1562 perm/sec)   p_kst 1.052632e-06   p_cons 9.083958e-01   p_joint 1.157895e-05

Joint ci ratio: 1.131599e+00	ci left: 5.719972e-06	ci right 2.050203e-05	k: 11	n:960000
Cons ci ratio: 1.270484e-03	ci left: 9.078181e-01	ci right 9.089732e-01	k: 872061	n:960000
KS ci ratio: 2.771854e+00	ci left: 2.637272e-08	ci right 5.803781e-06	k: 1	n:960000
DUSP27   960000 perm   619 sec   (1552 perm/sec)   p_kst 1.041667e-06   p_cons 9.083969e-01   p_joint 1.145833e-05

Joint ci ratio: 1.131599e+00	ci left: 5.661003e-06	ci right 2.029067e-05	k: 11	n:970000
Cons ci ratio: 1.264278e-03	ci left: 9.077736e-01	ci right 9.089230e-01	k: 881099	n:970000
KS ci ratio: 2.771854e+00	ci left: 2.610083e-08	ci right 5.743949e-06	k: 1	n:970000
DUSP27   970000 perm   630 sec   (1539 perm/sec)   p_kst 1.030928e-06   p_cons 9.083495e-01   p_joint 1.134021e-05

Joint ci ratio: 1.131599e+00	ci left: 5.603238e-06	ci right 2.008362e-05	k: 11	n:980000
Cons ci ratio: 1.258108e-03	ci left: 9.077371e-01	ci right 9.088809e-01	k: 890144	n:980000
KS ci ratio: 2.771854e+00	ci left: 2.583450e-08	ci right 5.685337e-06	k: 1	n:980000
DUSP27   980000 perm   641 sec   (1530 perm/sec)   p_kst 1.020408e-06   p_cons 9.083102e-01   p_joint 1.122449e-05

Joint ci ratio: 1.131599e+00	ci left: 5.546639e-06	ci right 1.988076e-05	k: 11	n:990000
Cons ci ratio: 1.251412e-03	ci left: 9.077835e-01	ci right 9.089212e-01	k: 899270	n:990000
KS ci ratio: 2.771854e+00	ci left: 2.557354e-08	ci right 5.627910e-06	k: 1	n:990000
DUSP27   990000 perm   651 sec   (1520 perm/sec)   p_kst 1.010101e-06   p_cons 9.083535e-01   p_joint 1.111111e-05

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.688873e-06	k: 0	n:1000000
Cons ci ratio: 1.245151e-03	ci left: 9.077848e-01	ci right 9.089168e-01	k: 908352	n:1000000
KS ci ratio: 2.771854e+00	ci left: 2.531781e-08	ci right 5.571631e-06	k: 1	n:1000000
DUSP27   1000000 perm   662 sec   (1512 perm/sec)   p_kst 1.000000e-06   p_cons 9.083520e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.652349e-06	k: 0	n:1010000
Cons ci ratio: 1.238975e-03	ci left: 9.077871e-01	ci right 9.089135e-01	k: 917435	n:1010000
KS ci ratio: 2.771854e+00	ci left: 2.506714e-08	ci right 5.516466e-06	k: 1	n:1010000
DUSP27   1010000 perm   674 sec   (1498 perm/sec)   p_kst 9.900990e-07   p_cons 9.083515e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.616542e-06	k: 0	n:1020000
Cons ci ratio: 1.232731e-03	ci left: 9.078110e-01	ci right 9.089318e-01	k: 926540	n:1020000
KS ci ratio: 2.771855e+00	ci left: 2.482138e-08	ci right 5.462383e-06	k: 1	n:1020000
DUSP27   1020000 perm   686 sec   (1488 perm/sec)   p_kst 9.803922e-07   p_cons 9.083725e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.581430e-06	k: 0	n:1030000
Cons ci ratio: 1.227081e-03	ci left: 9.077663e-01	ci right 9.088819e-01	k: 935575	n:1030000
KS ci ratio: 2.771855e+00	ci left: 2.458040e-08	ci right 5.409351e-06	k: 1	n:1030000
DUSP27   1030000 perm   697 sec   (1478 perm/sec)   p_kst 9.708738e-07   p_cons 9.083252e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.546993e-06	k: 0	n:1040000
Cons ci ratio: 1.221422e-03	ci left: 9.077341e-01	ci right 9.088444e-01	k: 944622	n:1040000
KS ci ratio: 2.771855e+00	ci left: 2.434405e-08	ci right 5.357338e-06	k: 1	n:1040000
DUSP27   1040000 perm   708 sec   (1468 perm/sec)   p_kst 9.615385e-07   p_cons 9.082904e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.513212e-06	k: 0	n:1050000
Cons ci ratio: 1.215571e-03	ci left: 9.077397e-01	ci right 9.088447e-01	k: 953708	n:1050000
KS ci ratio: 2.771855e+00	ci left: 2.411220e-08	ci right 5.306315e-06	k: 1	n:1050000
DUSP27   1050000 perm   720 sec   (1459 perm/sec)   p_kst 9.523810e-07   p_cons 9.082933e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.480069e-06	k: 0	n:1060000
Cons ci ratio: 1.209679e-03	ci left: 9.077622e-01	ci right 9.088619e-01	k: 962812	n:1060000
KS ci ratio: 2.771855e+00	ci left: 2.388472e-08	ci right 5.256256e-06	k: 1	n:1060000
DUSP27   1060000 perm   730 sec   (1451 perm/sec)   p_kst 9.433962e-07   p_cons 9.083132e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.447545e-06	k: 0	n:1070000
Cons ci ratio: 1.204230e-03	ci left: 9.077347e-01	ci right 9.088294e-01	k: 971863	n:1070000
KS ci ratio: 2.771855e+00	ci left: 2.366150e-08	ci right 5.207132e-06	k: 1	n:1070000
DUSP27   1070000 perm   742 sec   (1442 perm/sec)   p_kst 9.345794e-07   p_cons 9.082832e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.415623e-06	k: 0	n:1080000
Cons ci ratio: 1.198621e-03	ci left: 9.077402e-01	ci right 9.088298e-01	k: 980949	n:1080000
KS ci ratio: 2.771855e+00	ci left: 2.344241e-08	ci right 5.158918e-06	k: 1	n:1080000
DUSP27   1080000 perm   754 sec   (1433 perm/sec)   p_kst 9.259259e-07   p_cons 9.082861e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.384287e-06	k: 0	n:1090000
Cons ci ratio: 1.193221e-03	ci left: 9.077272e-01	ci right 9.088119e-01	k: 990015	n:1090000
KS ci ratio: 2.771855e+00	ci left: 2.322735e-08	ci right 5.111589e-06	k: 1	n:1090000
DUSP27   1090000 perm   765 sec   (1425 perm/sec)   p_kst 9.174312e-07   p_cons 9.082706e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.353521e-06	k: 0	n:1100000
Cons ci ratio: 1.188184e-03	ci left: 9.076735e-01	ci right 9.087535e-01	k: 999036	n:1100000
KS ci ratio: 2.771855e+00	ci left: 2.301619e-08	ci right 5.065120e-06	k: 1	n:1100000
DUSP27   1100000 perm   776 sec   (1417 perm/sec)   p_kst 9.090909e-07   p_cons 9.082145e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.323309e-06	k: 0	n:1110000
Cons ci ratio: 1.182572e-03	ci left: 9.077110e-01	ci right 9.087860e-01	k: 1008157	n:1110000
KS ci ratio: 2.771855e+00	ci left: 2.280884e-08	ci right 5.019488e-06	k: 1	n:1110000
DUSP27   1110000 perm   789 sec   (1407 perm/sec)   p_kst 9.009009e-07   p_cons 9.082495e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.293637e-06	k: 0	n:1120000
Cons ci ratio: 1.177277e-03	ci left: 9.077139e-01	ci right 9.087840e-01	k: 1017240	n:1120000
KS ci ratio: 2.771855e+00	ci left: 2.260519e-08	ci right 4.974671e-06	k: 1	n:1120000
DUSP27   1120000 perm   801 sec   (1398 perm/sec)   p_kst 8.928571e-07   p_cons 9.082500e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.264490e-06	k: 0	n:1130000
Cons ci ratio: 1.172084e-03	ci left: 9.077123e-01	ci right 9.087777e-01	k: 1026318	n:1130000
KS ci ratio: 2.771855e+00	ci left: 2.240514e-08	ci right 4.930648e-06	k: 1	n:1130000
DUSP27   1130000 perm   812 sec   (1391 perm/sec)   p_kst 8.849558e-07   p_cons 9.082460e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.235854e-06	k: 0	n:1140000
Cons ci ratio: 1.167125e-03	ci left: 9.076870e-01	ci right 9.087478e-01	k: 1035369	n:1140000
KS ci ratio: 2.771855e+00	ci left: 2.220860e-08	ci right 4.887397e-06	k: 1	n:1140000
DUSP27   1140000 perm   824 sec   (1383 perm/sec)   p_kst 8.771930e-07   p_cons 9.082184e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.207716e-06	k: 0	n:1150000
Cons ci ratio: 1.161993e-03	ci left: 9.076961e-01	ci right 9.087523e-01	k: 1044459	n:1150000
KS ci ratio: 2.771855e+00	ci left: 2.201548e-08	ci right 4.844898e-06	k: 1	n:1150000
DUSP27   1150000 perm   836 sec   (1376 perm/sec)   p_kst 8.695652e-07   p_cons 9.082252e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.180063e-06	k: 0	n:1160000
Cons ci ratio: 1.156669e-03	ci left: 9.077422e-01	ci right 9.087936e-01	k: 1053592	n:1160000
KS ci ratio: 2.771855e+00	ci left: 2.182570e-08	ci right 4.803131e-06	k: 1	n:1160000
DUSP27   1160000 perm   849 sec   (1367 perm/sec)   p_kst 8.620690e-07   p_cons 9.082690e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.152883e-06	k: 0	n:1170000
Cons ci ratio: 1.151690e-03	ci left: 9.077482e-01	ci right 9.087951e-01	k: 1062679	n:1170000
KS ci ratio: 2.771855e+00	ci left: 2.163915e-08	ci right 4.762079e-06	k: 1	n:1170000
DUSP27   1170000 perm   862 sec   (1357 perm/sec)   p_kst 8.547009e-07   p_cons 9.082726e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.126164e-06	k: 0	n:1180000
Cons ci ratio: 1.146927e-03	ci left: 9.077320e-01	ci right 9.087745e-01	k: 1071740	n:1180000
KS ci ratio: 2.771855e+00	ci left: 2.145577e-08	ci right 4.721723e-06	k: 1	n:1180000
DUSP27   1180000 perm   876 sec   (1347 perm/sec)   p_kst 8.474576e-07   p_cons 9.082542e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.099894e-06	k: 0	n:1190000
Cons ci ratio: 1.141830e-03	ci left: 9.077733e-01	ci right 9.088113e-01	k: 1080869	n:1190000
KS ci ratio: 2.771855e+00	ci left: 2.127547e-08	ci right 4.682044e-06	k: 1	n:1190000
DUSP27   1190000 perm   893 sec   (1333 perm/sec)   p_kst 8.403361e-07   p_cons 9.082933e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.074061e-06	k: 0	n:1200000
Cons ci ratio: 1.137528e-03	ci left: 9.077070e-01	ci right 9.087410e-01	k: 1089870	n:1200000
KS ci ratio: 2.771855e+00	ci left: 2.109817e-08	ci right 4.643027e-06	k: 1	n:1200000
DUSP27   1200000 perm   905 sec   (1325 perm/sec)   p_kst 8.333333e-07   p_cons 9.082250e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.048656e-06	k: 0	n:1210000
Cons ci ratio: 1.132842e-03	ci left: 9.077057e-01	ci right 9.087353e-01	k: 1098948	n:1210000
KS ci ratio: 2.771855e+00	ci left: 2.092381e-08	ci right 4.604655e-06	k: 1	n:1210000
DUSP27   1210000 perm   920 sec   (1315 perm/sec)   p_kst 8.264463e-07   p_cons 9.082215e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.023667e-06	k: 0	n:1220000
Cons ci ratio: 1.128462e-03	ci left: 9.076674e-01	ci right 9.086930e-01	k: 1107981	n:1220000
KS ci ratio: 2.771855e+00	ci left: 2.075230e-08	ci right 4.566912e-06	k: 1	n:1220000
DUSP27   1220000 perm   935 sec   (1305 perm/sec)   p_kst 8.196721e-07   p_cons 9.081811e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.999084e-06	k: 0	n:1230000
Cons ci ratio: 1.123996e-03	ci left: 9.076500e-01	ci right 9.086716e-01	k: 1117039	n:1230000
KS ci ratio: 2.771855e+00	ci left: 2.058358e-08	ci right 4.529783e-06	k: 1	n:1230000
DUSP27   1230000 perm   952 sec   (1293 perm/sec)   p_kst 8.130081e-07   p_cons 9.081618e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.974898e-06	k: 0	n:1240000
Cons ci ratio: 1.119777e-03	ci left: 9.076039e-01	ci right 9.086216e-01	k: 1126061	n:1240000
KS ci ratio: 2.771855e+00	ci left: 2.041759e-08	ci right 4.493253e-06	k: 1	n:1240000
DUSP27   1240000 perm   965 sec   (1285 perm/sec)   p_kst 8.064516e-07   p_cons 9.081137e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.951099e-06	k: 0	n:1250000
Cons ci ratio: 1.115295e-03	ci left: 9.076051e-01	ci right 9.086187e-01	k: 1135141	n:1250000
KS ci ratio: 2.771855e+00	ci left: 2.025425e-08	ci right 4.457307e-06	k: 1	n:1250000
DUSP27   1250000 perm   978 sec   (1278 perm/sec)   p_kst 8.000000e-07   p_cons 9.081128e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.927678e-06	k: 0	n:1260000
Cons ci ratio: 1.111004e-03	ci left: 9.075855e-01	ci right 9.085952e-01	k: 1144195	n:1260000
KS ci ratio: 2.771855e+00	ci left: 2.009350e-08	ci right 4.421931e-06	k: 1	n:1260000
DUSP27   1260000 perm   994 sec   (1267 perm/sec)   p_kst 7.936508e-07   p_cons 9.080913e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.904625e-06	k: 0	n:1270000
Cons ci ratio: 1.106595e-03	ci left: 9.075915e-01	ci right 9.085972e-01	k: 1153281	n:1270000
KS ci ratio: 2.771855e+00	ci left: 1.993528e-08	ci right 4.387113e-06	k: 1	n:1270000
DUSP27   1270000 perm   1011 sec   (1256 perm/sec)   p_kst 7.874016e-07   p_cons 9.080953e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.881933e-06	k: 0	n:1280000
Cons ci ratio: 1.102449e-03	ci left: 9.075653e-01	ci right 9.085672e-01	k: 1162326	n:1280000
KS ci ratio: 2.771855e+00	ci left: 1.977954e-08	ci right 4.352839e-06	k: 1	n:1280000
DUSP27   1280000 perm   1028 sec   (1245 perm/sec)   p_kst 7.812500e-07   p_cons 9.080672e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.859592e-06	k: 0	n:1290000
Cons ci ratio: 1.098334e-03	ci left: 9.075419e-01	ci right 9.085400e-01	k: 1171374	n:1290000
KS ci ratio: 2.771855e+00	ci left: 1.962621e-08	ci right 4.319096e-06	k: 1	n:1290000
DUSP27   1290000 perm   1042 sec   (1238 perm/sec)   p_kst 7.751938e-07   p_cons 9.080419e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.837596e-06	k: 0	n:1300000
Cons ci ratio: 1.094381e-03	ci left: 9.075011e-01	ci right 9.084955e-01	k: 1180399	n:1300000
KS ci ratio: 2.771855e+00	ci left: 1.947524e-08	ci right 4.285872e-06	k: 1	n:1300000
DUSP27   1300000 perm   1057 sec   (1230 perm/sec)   p_kst 7.692308e-07   p_cons 9.079992e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.815935e-06	k: 0	n:1310000
Cons ci ratio: 1.090136e-03	ci left: 9.075122e-01	ci right 9.085028e-01	k: 1189491	n:1310000
KS ci ratio: 2.771855e+00	ci left: 1.932657e-08	ci right 4.253155e-06	k: 1	n:1310000
DUSP27   1310000 perm   1072 sec   (1222 perm/sec)   p_kst 7.633588e-07   p_cons 9.080084e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.794602e-06	k: 0	n:1320000
Cons ci ratio: 1.086049e-03	ci left: 9.075064e-01	ci right 9.084933e-01	k: 1198561	n:1320000
KS ci ratio: 2.771855e+00	ci left: 1.918016e-08	ci right 4.220935e-06	k: 1	n:1320000
DUSP27   1320000 perm   1089 sec   (1213 perm/sec)   p_kst 7.575758e-07   p_cons 9.080008e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.773590e-06	k: 0	n:1330000
Cons ci ratio: 1.081885e-03	ci left: 9.075196e-01	ci right 9.085027e-01	k: 1207656	n:1330000
KS ci ratio: 2.771855e+00	ci left: 1.903595e-08	ci right 4.189198e-06	k: 1	n:1330000
DUSP27   1330000 perm   1103 sec   (1206 perm/sec)   p_kst 7.518797e-07   p_cons 9.080120e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.752891e-06	k: 0	n:1340000
Cons ci ratio: 1.077754e-03	ci left: 9.075348e-01	ci right 9.085142e-01	k: 1216754	n:1340000
KS ci ratio: 2.771855e+00	ci left: 1.889389e-08	ci right 4.157936e-06	k: 1	n:1340000
DUSP27   1340000 perm   1117 sec   (1200 perm/sec)   p_kst 7.462687e-07   p_cons 9.080254e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.732500e-06	k: 0	n:1350000
Cons ci ratio: 1.073390e-03	ci left: 9.075936e-01	ci right 9.085691e-01	k: 1225911	n:1350000
KS ci ratio: 2.771856e+00	ci left: 1.875393e-08	ci right 4.127136e-06	k: 1	n:1350000
DUSP27   1350000 perm   1131 sec   (1194 perm/sec)   p_kst 7.407407e-07   p_cons 9.080822e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.712408e-06	k: 0	n:1360000
Cons ci ratio: 1.069421e-03	ci left: 9.075978e-01	ci right 9.085696e-01	k: 1234995	n:1360000
KS ci ratio: 2.771856e+00	ci left: 1.861604e-08	ci right 4.096790e-06	k: 1	n:1360000
DUSP27   1360000 perm   1146 sec   (1187 perm/sec)   p_kst 7.352941e-07   p_cons 9.080846e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.692609e-06	k: 0	n:1370000
Cons ci ratio: 1.065603e-03	ci left: 9.075850e-01	ci right 9.085534e-01	k: 1244056	n:1370000
KS ci ratio: 2.771856e+00	ci left: 1.848015e-08	ci right 4.066886e-06	k: 1	n:1370000
DUSP27   1370000 perm   1161 sec   (1180 perm/sec)   p_kst 7.299270e-07   p_cons 9.080701e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.673097e-06	k: 0	n:1380000
Cons ci ratio: 1.061905e-03	ci left: 9.075601e-01	ci right 9.085251e-01	k: 1253100	n:1380000
KS ci ratio: 2.771856e+00	ci left: 1.834624e-08	ci right 4.037416e-06	k: 1	n:1380000
DUSP27   1380000 perm   1177 sec   (1173 perm/sec)   p_kst 7.246377e-07   p_cons 9.080435e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.653867e-06	k: 0	n:1390000
Cons ci ratio: 1.058221e-03	ci left: 9.075392e-01	ci right 9.085008e-01	k: 1262149	n:1390000
KS ci ratio: 2.771856e+00	ci left: 1.821425e-08	ci right 4.008370e-06	k: 1	n:1390000
DUSP27   1390000 perm   1194 sec   (1164 perm/sec)   p_kst 7.194245e-07   p_cons 9.080209e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.634910e-06	k: 0	n:1400000
Cons ci ratio: 1.054468e-03	ci left: 9.075358e-01	ci right 9.084940e-01	k: 1271222	n:1400000
KS ci ratio: 2.771856e+00	ci left: 1.808415e-08	ci right 3.979739e-06	k: 1	n:1400000
DUSP27   1400000 perm   1209 sec   (1158 perm/sec)   p_kst 7.142857e-07   p_cons 9.080157e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.616223e-06	k: 0	n:1410000
Cons ci ratio: 1.050758e-03	ci left: 9.075317e-01	ci right 9.084865e-01	k: 1280294	n:1410000
KS ci ratio: 2.771856e+00	ci left: 1.795589e-08	ci right 3.951514e-06	k: 1	n:1410000
DUSP27   1410000 perm   1223 sec   (1153 perm/sec)   p_kst 7.092199e-07   p_cons 9.080099e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.597799e-06	k: 0	n:1420000
Cons ci ratio: 1.047176e-03	ci left: 9.075136e-01	ci right 9.084651e-01	k: 1289346	n:1420000
KS ci ratio: 2.771856e+00	ci left: 1.782944e-08	ci right 3.923686e-06	k: 1	n:1420000
DUSP27   1420000 perm   1242 sec   (1143 perm/sec)   p_kst 7.042254e-07   p_cons 9.079901e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.579633e-06	k: 0	n:1430000
Cons ci ratio: 1.043525e-03	ci left: 9.075125e-01	ci right 9.084607e-01	k: 1298422	n:1430000
KS ci ratio: 2.771856e+00	ci left: 1.770476e-08	ci right 3.896248e-06	k: 1	n:1430000
DUSP27   1430000 perm   1258 sec   (1137 perm/sec)   p_kst 6.993007e-07   p_cons 9.079874e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.561719e-06	k: 0	n:1440000
Cons ci ratio: 1.040167e-03	ci left: 9.074704e-01	ci right 9.084155e-01	k: 1307439	n:1440000
KS ci ratio: 2.771856e+00	ci left: 1.758181e-08	ci right 3.869191e-06	k: 1	n:1440000
DUSP27   1440000 perm   1273 sec   (1131 perm/sec)   p_kst 6.944444e-07   p_cons 9.079438e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.544052e-06	k: 0	n:1450000
Cons ci ratio: 1.036345e-03	ci left: 9.075090e-01	ci right 9.084507e-01	k: 1316572	n:1450000
KS ci ratio: 2.771856e+00	ci left: 1.746056e-08	ci right 3.842507e-06	k: 1	n:1450000
DUSP27   1450000 perm   1289 sec   (1125 perm/sec)   p_kst 6.896552e-07   p_cons 9.079807e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.526627e-06	k: 0	n:1460000
Cons ci ratio: 1.032704e-03	ci left: 9.075245e-01	ci right 9.084629e-01	k: 1325672	n:1460000
KS ci ratio: 2.771856e+00	ci left: 1.734096e-08	ci right 3.816188e-06	k: 1	n:1460000
DUSP27   1460000 perm   1307 sec   (1117 perm/sec)   p_kst 6.849315e-07   p_cons 9.079945e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.509439e-06	k: 0	n:1470000
Cons ci ratio: 1.029323e-03	ci left: 9.075037e-01	ci right 9.084389e-01	k: 1334719	n:1470000
KS ci ratio: 2.771856e+00	ci left: 1.722300e-08	ci right 3.790228e-06	k: 1	n:1470000
DUSP27   1470000 perm   1323 sec   (1111 perm/sec)   p_kst 6.802721e-07   p_cons 9.079721e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.492483e-06	k: 0	n:1480000
Cons ci ratio: 1.025802e-03	ci left: 9.075115e-01	ci right 9.084436e-01	k: 1343808	n:1480000
KS ci ratio: 2.771856e+00	ci left: 1.710663e-08	ci right 3.764618e-06	k: 1	n:1480000
DUSP27   1480000 perm   1339 sec   (1106 perm/sec)   p_kst 6.756757e-07   p_cons 9.079784e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.475755e-06	k: 0	n:1490000
Cons ci ratio: 1.022353e-03	ci left: 9.075133e-01	ci right 9.084422e-01	k: 1352888	n:1490000
KS ci ratio: 2.771856e+00	ci left: 1.699182e-08	ci right 3.739352e-06	k: 1	n:1490000
DUSP27   1490000 perm   1354 sec   (1101 perm/sec)   p_kst 6.711409e-07   p_cons 9.079785e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.459250e-06	k: 0	n:1500000
Cons ci ratio: 1.019064e-03	ci left: 9.074943e-01	ci right 9.084202e-01	k: 1361937	n:1500000
KS ci ratio: 2.771856e+00	ci left: 1.687854e-08	ci right 3.714423e-06	k: 1	n:1500000
DUSP27   1500000 perm   1369 sec   (1095 perm/sec)   p_kst 6.666667e-07   p_cons 9.079580e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.442964e-06	k: 0	n:1510000
Cons ci ratio: 1.015630e-03	ci left: 9.075047e-01	ci right 9.084275e-01	k: 1371030	n:1510000
KS ci ratio: 2.771856e+00	ci left: 1.676676e-08	ci right 3.689824e-06	k: 1	n:1510000
DUSP27   1510000 perm   1384 sec   (1091 perm/sec)   p_kst 6.622517e-07   p_cons 9.079669e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.426891e-06	k: 0	n:1520000
Cons ci ratio: 1.012314e-03	ci left: 9.075012e-01	ci right 9.084210e-01	k: 1380102	n:1520000
KS ci ratio: 2.771856e+00	ci left: 1.665645e-08	ci right 3.665549e-06	k: 1	n:1520000
DUSP27   1520000 perm   1399 sec   (1087 perm/sec)   p_kst 6.578947e-07   p_cons 9.079618e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.411029e-06	k: 0	n:1530000
Cons ci ratio: 1.009027e-03	ci left: 9.074983e-01	ci right 9.084151e-01	k: 1389175	n:1530000
KS ci ratio: 2.771856e+00	ci left: 1.654759e-08	ci right 3.641592e-06	k: 1	n:1530000
DUSP27   1530000 perm   1413 sec   (1083 perm/sec)   p_kst 6.535948e-07   p_cons 9.079575e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.395373e-06	k: 0	n:1540000
Cons ci ratio: 1.005709e-03	ci left: 9.075060e-01	ci right 9.084198e-01	k: 1398264	n:1540000
KS ci ratio: 2.771856e+00	ci left: 1.644014e-08	ci right 3.617945e-06	k: 1	n:1540000
DUSP27   1540000 perm   1429 sec   (1077 perm/sec)   p_kst 6.493506e-07   p_cons 9.079636e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.379919e-06	k: 0	n:1550000
Cons ci ratio: 1.002369e-03	ci left: 9.075226e-01	ci right 9.084333e-01	k: 1407367	n:1550000
KS ci ratio: 2.771856e+00	ci left: 1.633407e-08	ci right 3.594603e-06	k: 1	n:1550000
DUSP27   1550000 perm   1444 sec   (1073 perm/sec)   p_kst 6.451613e-07   p_cons 9.079787e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.364664e-06	k: 0	n:1560000
Cons ci ratio: 9.991806e-04	ci left: 9.075190e-01	ci right 9.084269e-01	k: 1416439	n:1560000
KS ci ratio: 2.771856e+00	ci left: 1.622936e-08	ci right 3.571561e-06	k: 1	n:1560000
DUSP27   1560000 perm   1460 sec   (1069 perm/sec)   p_kst 6.410256e-07   p_cons 9.079737e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.349602e-06	k: 0	n:1570000
Cons ci ratio: 9.961822e-04	ci left: 9.074887e-01	ci right 9.083938e-01	k: 1425469	n:1570000
KS ci ratio: 2.771856e+00	ci left: 1.612599e-08	ci right 3.548812e-06	k: 1	n:1570000
DUSP27   1570000 perm   1475 sec   (1064 perm/sec)   p_kst 6.369427e-07   p_cons 9.079420e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.334731e-06	k: 0	n:1580000
Cons ci ratio: 9.930902e-04	ci left: 9.074791e-01	ci right 9.083814e-01	k: 1434531	n:1580000
KS ci ratio: 2.771856e+00	ci left: 1.602393e-08	ci right 3.526351e-06	k: 1	n:1580000
DUSP27   1580000 perm   1492 sec   (1059 perm/sec)   p_kst 6.329114e-07   p_cons 9.079310e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.320047e-06	k: 0	n:1590000
Cons ci ratio: 9.899635e-04	ci left: 9.074804e-01	ci right 9.083798e-01	k: 1443610	n:1590000
KS ci ratio: 2.771856e+00	ci left: 1.592315e-08	ci right 3.504173e-06	k: 1	n:1590000
DUSP27   1590000 perm   1509 sec   (1054 perm/sec)   p_kst 6.289308e-07   p_cons 9.079308e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.305547e-06	k: 0	n:1600000
Cons ci ratio: 9.435880e-04	ci left: 9.147259e-01	ci right 9.155901e-01	k: 1464254	n:1600000
KS ci ratio: 2.771856e+00	ci left: 1.582363e-08	ci right 3.482272e-06	k: 1	n:1600000
DUSP27   1600000 perm   1524 sec   (1050 perm/sec)   p_kst 6.250000e-07   p_cons 9.151588e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.291227e-06	k: 0	n:1610000
Cons ci ratio: 9.407493e-04	ci left: 9.147113e-01	ci right 9.155729e-01	k: 1473380	n:1610000
KS ci ratio: 2.771856e+00	ci left: 1.572535e-08	ci right 3.460643e-06	k: 1	n:1610000
DUSP27   1610000 perm   1541 sec   (1045 perm/sec)   p_kst 6.211180e-07   p_cons 9.151429e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.277083e-06	k: 0	n:1620000
Cons ci ratio: 9.379845e-04	ci left: 9.146889e-01	ci right 9.155479e-01	k: 1482493	n:1620000
KS ci ratio: 2.771856e+00	ci left: 1.562828e-08	ci right 3.439281e-06	k: 1	n:1620000
DUSP27   1620000 perm   1558 sec   (1040 perm/sec)   p_kst 6.172840e-07   p_cons 9.151191e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.263114e-06	k: 0	n:1630000
Cons ci ratio: 9.350592e-04	ci left: 9.146975e-01	ci right 9.155538e-01	k: 1491656	n:1630000
KS ci ratio: 2.771856e+00	ci left: 1.553240e-08	ci right 3.418181e-06	k: 1	n:1630000
DUSP27   1630000 perm   1574 sec   (1036 perm/sec)   p_kst 6.134969e-07   p_cons 9.151264e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.249314e-06	k: 0	n:1640000
Cons ci ratio: 9.319379e-04	ci left: 9.147433e-01	ci right 9.155967e-01	k: 1500880	n:1640000
KS ci ratio: 2.771856e+00	ci left: 1.543769e-08	ci right 3.397339e-06	k: 1	n:1640000
DUSP27   1640000 perm   1589 sec   (1032 perm/sec)   p_kst 6.097561e-07   p_cons 9.151707e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.235682e-06	k: 0	n:1650000
Cons ci ratio: 9.291665e-04	ci left: 9.147350e-01	ci right 9.155859e-01	k: 1510016	n:1650000
KS ci ratio: 2.771856e+00	ci left: 1.534413e-08	ci right 3.376749e-06	k: 1	n:1650000
DUSP27   1650000 perm   1605 sec   (1028 perm/sec)   p_kst 6.060606e-07   p_cons 9.151612e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.222214e-06	k: 0	n:1660000
Cons ci ratio: 9.265346e-04	ci left: 9.147076e-01	ci right 9.155560e-01	k: 1519120	n:1660000
KS ci ratio: 2.771856e+00	ci left: 1.525169e-08	ci right 3.356407e-06	k: 1	n:1660000
DUSP27   1660000 perm   1622 sec   (1023 perm/sec)   p_kst 6.024096e-07   p_cons 9.151325e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.208907e-06	k: 0	n:1670000
Cons ci ratio: 9.237077e-04	ci left: 9.147170e-01	ci right 9.155630e-01	k: 1528285	n:1670000
KS ci ratio: 2.771856e+00	ci left: 1.516036e-08	ci right 3.336309e-06	k: 1	n:1670000
DUSP27   1670000 perm   1642 sec   (1017 perm/sec)   p_kst 5.988024e-07   p_cons 9.151407e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.195759e-06	k: 0	n:1680000
Cons ci ratio: 9.631185e-04	ci left: 9.074862e-01	ci right 9.083612e-01	k: 1525313	n:1680000
KS ci ratio: 2.771856e+00	ci left: 1.507012e-08	ci right 3.316450e-06	k: 1	n:1680000
DUSP27   1680000 perm   1660 sec   (1012 perm/sec)   p_kst 5.952381e-07   p_cons 9.079244e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.182767e-06	k: 0	n:1690000
Cons ci ratio: 9.601467e-04	ci left: 9.075081e-01	ci right 9.083804e-01	k: 1534427	n:1690000
KS ci ratio: 2.771856e+00	ci left: 1.498095e-08	ci right 3.296826e-06	k: 1	n:1690000
DUSP27   1690000 perm   1677 sec   (1008 perm/sec)   p_kst 5.917160e-07   p_cons 9.079450e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.169927e-06	k: 0	n:1700000
Cons ci ratio: 9.572325e-04	ci left: 9.075245e-01	ci right 9.083942e-01	k: 1543532	n:1700000
KS ci ratio: 2.771856e+00	ci left: 1.489283e-08	ci right 3.277433e-06	k: 1	n:1700000
DUSP27   1700000 perm   1694 sec   (1004 perm/sec)   p_kst 5.882353e-07   p_cons 9.079600e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.157237e-06	k: 0	n:1710000
Cons ci ratio: 9.545683e-04	ci left: 9.075014e-01	ci right 9.083686e-01	k: 1552570	n:1710000
KS ci ratio: 2.771856e+00	ci left: 1.480574e-08	ci right 3.258267e-06	k: 1	n:1710000
DUSP27   1710000 perm   1710 sec   (1000 perm/sec)   p_kst 5.847953e-07   p_cons 9.079357e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.144695e-06	k: 0	n:1720000
Cons ci ratio: 9.518005e-04	ci left: 9.075007e-01	ci right 9.083654e-01	k: 1561646	n:1720000
KS ci ratio: 2.771856e+00	ci left: 1.471966e-08	ci right 3.239323e-06	k: 1	n:1720000
DUSP27   1720000 perm   1727 sec   (996 perm/sec)   p_kst 5.813953e-07   p_cons 9.079337e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.132298e-06	k: 0	n:1730000
Cons ci ratio: 9.490927e-04	ci left: 9.074936e-01	ci right 9.083559e-01	k: 1570711	n:1730000
KS ci ratio: 2.771856e+00	ci left: 1.463457e-08	ci right 3.220599e-06	k: 1	n:1730000
DUSP27   1730000 perm   1743 sec   (992 perm/sec)   p_kst 5.780347e-07   p_cons 9.079254e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.120043e-06	k: 0	n:1740000
Cons ci ratio: 9.463915e-04	ci left: 9.074895e-01	ci right 9.083493e-01	k: 1579781	n:1740000
KS ci ratio: 2.771856e+00	ci left: 1.455046e-08	ci right 3.202090e-06	k: 1	n:1740000
DUSP27   1740000 perm   1760 sec   (989 perm/sec)   p_kst 5.747126e-07   p_cons 9.079201e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.107929e-06	k: 0	n:1750000
Cons ci ratio: 9.436392e-04	ci left: 9.074987e-01	ci right 9.083560e-01	k: 1588874	n:1750000
KS ci ratio: 2.771856e+00	ci left: 1.446732e-08	ci right 3.183792e-06	k: 1	n:1750000
DUSP27   1750000 perm   1777 sec   (985 perm/sec)   p_kst 5.714286e-07   p_cons 9.079280e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.095952e-06	k: 0	n:1760000
Cons ci ratio: 9.412912e-04	ci left: 9.074400e-01	ci right 9.082951e-01	k: 1597848	n:1760000
KS ci ratio: 2.771856e+00	ci left: 1.438512e-08	ci right 3.165702e-06	k: 1	n:1760000
DUSP27   1760000 perm   1795 sec   (981 perm/sec)   p_kst 5.681818e-07   p_cons 9.078682e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.084111e-06	k: 0	n:1770000
Cons ci ratio: 9.387352e-04	ci left: 9.074221e-01	ci right 9.082749e-01	k: 1606893	n:1770000
KS ci ratio: 2.771856e+00	ci left: 1.430385e-08	ci right 3.147817e-06	k: 1	n:1770000
DUSP27   1770000 perm   1812 sec   (977 perm/sec)   p_kst 5.649718e-07   p_cons 9.078492e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.072402e-06	k: 0	n:1780000
Cons ci ratio: 9.360112e-04	ci left: 9.074382e-01	ci right 9.082885e-01	k: 1615998	n:1780000
KS ci ratio: 2.771856e+00	ci left: 1.422349e-08	ci right 3.130133e-06	k: 1	n:1780000
DUSP27   1780000 perm   1829 sec   (973 perm/sec)   p_kst 5.617978e-07   p_cons 9.078640e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.060824e-06	k: 0	n:1790000
Cons ci ratio: 9.333576e-04	ci left: 9.074458e-01	ci right 9.082937e-01	k: 1625088	n:1790000
KS ci ratio: 2.771856e+00	ci left: 1.414403e-08	ci right 3.112646e-06	k: 1	n:1790000
DUSP27   1790000 perm   1845 sec   (970 perm/sec)   p_kst 5.586592e-07   p_cons 9.078704e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.049375e-06	k: 0	n:1800000
Cons ci ratio: 9.308778e-04	ci left: 9.074260e-01	ci right 9.082716e-01	k: 1634129	n:1800000
KS ci ratio: 2.771856e+00	ci left: 1.406545e-08	ci right 3.095354e-06	k: 1	n:1800000
DUSP27   1800000 perm   1865 sec   (965 perm/sec)   p_kst 5.555556e-07   p_cons 9.078494e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.038053e-06	k: 0	n:1810000
Cons ci ratio: 9.283932e-04	ci left: 9.074108e-01	ci right 9.082542e-01	k: 1643178	n:1810000
KS ci ratio: 2.771856e+00	ci left: 1.398774e-08	ci right 3.078252e-06	k: 1	n:1810000
DUSP27   1810000 perm   1884 sec   (961 perm/sec)   p_kst 5.524862e-07   p_cons 9.078331e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.026855e-06	k: 0	n:1820000
Cons ci ratio: 9.258249e-04	ci left: 9.074146e-01	ci right 9.082556e-01	k: 1652261	n:1820000
KS ci ratio: 2.771856e+00	ci left: 1.391088e-08	ci right 3.061339e-06	k: 1	n:1820000
DUSP27   1820000 perm   1900 sec   (958 perm/sec)   p_kst 5.494505e-07   p_cons 9.078357e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.015779e-06	k: 0	n:1830000
Cons ci ratio: 9.232779e-04	ci left: 9.074182e-01	ci right 9.082570e-01	k: 1661344	n:1830000
KS ci ratio: 2.771856e+00	ci left: 1.383487e-08	ci right 3.044610e-06	k: 1	n:1830000
DUSP27   1830000 perm   1917 sec   (954 perm/sec)   p_kst 5.464481e-07   p_cons 9.078383e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.004824e-06	k: 0	n:1840000
Cons ci ratio: 9.208923e-04	ci left: 9.073963e-01	ci right 9.082328e-01	k: 1670380	n:1840000
KS ci ratio: 2.771856e+00	ci left: 1.375968e-08	ci right 3.028063e-06	k: 1	n:1840000
DUSP27   1840000 perm   1935 sec   (951 perm/sec)   p_kst 5.434783e-07   p_cons 9.078152e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.993987e-06	k: 0	n:1850000
Cons ci ratio: 9.183619e-04	ci left: 9.074044e-01	ci right 9.082386e-01	k: 1679471	n:1850000
KS ci ratio: 2.771856e+00	ci left: 1.368530e-08	ci right 3.011695e-06	k: 1	n:1850000
DUSP27   1850000 perm   1952 sec   (948 perm/sec)   p_kst 5.405405e-07   p_cons 9.078222e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.983267e-06	k: 0	n:1860000
Cons ci ratio: 9.158405e-04	ci left: 9.074146e-01	ci right 9.082465e-01	k: 1688566	n:1860000
KS ci ratio: 2.771856e+00	ci left: 1.361172e-08	ci right 2.995504e-06	k: 1	n:1860000
DUSP27   1860000 perm   1969 sec   (945 perm/sec)   p_kst 5.376344e-07   p_cons 9.078312e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.972661e-06	k: 0	n:1870000
Cons ci ratio: 9.133426e-04	ci left: 9.074241e-01	ci right 9.082538e-01	k: 1697660	n:1870000
KS ci ratio: 2.771856e+00	ci left: 1.353893e-08	ci right 2.979485e-06	k: 1	n:1870000
DUSP27   1870000 perm   1987 sec   (941 perm/sec)   p_kst 5.347594e-07   p_cons 9.078396e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.962168e-06	k: 0	n:1880000
Cons ci ratio: 9.109172e-04	ci left: 9.074239e-01	ci right 9.082514e-01	k: 1706736	n:1880000
KS ci ratio: 2.771856e+00	ci left: 1.346692e-08	ci right 2.963636e-06	k: 1	n:1880000
DUSP27   1880000 perm   2003 sec   (938 perm/sec)   p_kst 5.319149e-07   p_cons 9.078383e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.951786e-06	k: 0	n:1890000
Cons ci ratio: 9.085340e-04	ci left: 9.074195e-01	ci right 9.082448e-01	k: 1715804	n:1890000
KS ci ratio: 2.771856e+00	ci left: 1.339567e-08	ci right 2.947956e-06	k: 1	n:1890000
DUSP27   1890000 perm   2021 sec   (935 perm/sec)   p_kst 5.291005e-07   p_cons 9.078328e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.941514e-06	k: 0	n:1900000
Cons ci ratio: 9.061666e-04	ci left: 9.074157e-01	ci right 9.082388e-01	k: 1724873	n:1900000
KS ci ratio: 2.771856e+00	ci left: 1.332516e-08	ci right 2.932440e-06	k: 1	n:1900000
DUSP27   1900000 perm   2039 sec   (932 perm/sec)   p_kst 5.263158e-07   p_cons 9.078279e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.931349e-06	k: 0	n:1910000
Cons ci ratio: 9.037694e-04	ci left: 9.074208e-01	ci right 9.082418e-01	k: 1733959	n:1910000
KS ci ratio: 2.771856e+00	ci left: 1.325540e-08	ci right 2.917087e-06	k: 1	n:1910000
DUSP27   1910000 perm   2057 sec   (929 perm/sec)   p_kst 5.235602e-07   p_cons 9.078319e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.921290e-06	k: 0	n:1920000
Cons ci ratio: 9.013969e-04	ci left: 9.074249e-01	ci right 9.082437e-01	k: 1743043	n:1920000
KS ci ratio: 2.771856e+00	ci left: 1.318636e-08	ci right 2.901894e-06	k: 1	n:1920000
DUSP27   1920000 perm   2074 sec   (926 perm/sec)   p_kst 5.208333e-07   p_cons 9.078349e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.911335e-06	k: 0	n:1930000
Cons ci ratio: 8.991152e-04	ci left: 9.074154e-01	ci right 9.082321e-01	k: 1752101	n:1930000
KS ci ratio: 2.771856e+00	ci left: 1.311804e-08	ci right 2.886858e-06	k: 1	n:1930000
DUSP27   1930000 perm   2092 sec   (923 perm/sec)   p_kst 5.181347e-07   p_cons 9.078244e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.901482e-06	k: 0	n:1940000
Cons ci ratio: 8.968646e-04	ci left: 9.074034e-01	ci right 9.082181e-01	k: 1761154	n:1940000
KS ci ratio: 2.771856e+00	ci left: 1.305042e-08	ci right 2.871978e-06	k: 1	n:1940000
DUSP27   1940000 perm   2111 sec   (919 perm/sec)   p_kst 5.154639e-07   p_cons 9.078113e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.891731e-06	k: 0	n:1950000
Cons ci ratio: 8.944719e-04	ci left: 9.074213e-01	ci right 9.082339e-01	k: 1770265	n:1950000
KS ci ratio: 2.771856e+00	ci left: 1.298349e-08	ci right 2.857250e-06	k: 1	n:1950000
DUSP27   1950000 perm   2128 sec   (916 perm/sec)   p_kst 5.128205e-07   p_cons 9.078282e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.882080e-06	k: 0	n:1960000
Cons ci ratio: 8.921471e-04	ci left: 9.074299e-01	ci right 9.082403e-01	k: 1779358	n:1960000
KS ci ratio: 2.771856e+00	ci left: 1.291725e-08	ci right 2.842672e-06	k: 1	n:1960000
DUSP27   1960000 perm   2146 sec   (913 perm/sec)   p_kst 5.102041e-07   p_cons 9.078357e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.872526e-06	k: 0	n:1970000
Cons ci ratio: 8.897972e-04	ci left: 9.074465e-01	ci right 9.082548e-01	k: 1788467	n:1970000
KS ci ratio: 2.771856e+00	ci left: 1.285168e-08	ci right 2.828242e-06	k: 1	n:1970000
DUSP27   1970000 perm   2164 sec   (910 perm/sec)   p_kst 5.076142e-07   p_cons 9.078513e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.863069e-06	k: 0	n:1980000
Cons ci ratio: 8.874898e-04	ci left: 9.074584e-01	ci right 9.082646e-01	k: 1797567	n:1980000
KS ci ratio: 2.771856e+00	ci left: 1.278677e-08	ci right 2.813958e-06	k: 1	n:1980000
DUSP27   1980000 perm   2181 sec   (908 perm/sec)   p_kst 5.050505e-07   p_cons 9.078621e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.853707e-06	k: 0	n:1990000
Cons ci ratio: 8.852800e-04	ci left: 9.074551e-01	ci right 9.082593e-01	k: 1806637	n:1990000
KS ci ratio: 2.771856e+00	ci left: 1.272252e-08	ci right 2.799818e-06	k: 1	n:1990000
DUSP27   1990000 perm   2200 sec   (905 perm/sec)   p_kst 5.025126e-07   p_cons 9.078578e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.844438e-06	k: 0	n:2000000
Cons ci ratio: 8.829283e-04	ci left: 9.074819e-01	ci right 9.082839e-01	k: 1815767	n:2000000
KS ci ratio: 2.771857e+00	ci left: 1.265890e-08	ci right 2.785819e-06	k: 1	n:2000000
DUSP27   2000000 perm   2221 sec   (900 perm/sec)   p_kst 5.000000e-07   p_cons 9.078835e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.835262e-06	k: 0	n:2010000
Cons ci ratio: 8.807498e-04	ci left: 9.074790e-01	ci right 9.082791e-01	k: 1824838	n:2010000
KS ci ratio: 2.771857e+00	ci left: 1.259592e-08	ci right 2.771959e-06	k: 1	n:2010000
DUSP27   2010000 perm   2240 sec   (897 perm/sec)   p_kst 4.975124e-07   p_cons 9.078796e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.826176e-06	k: 0	n:2020000
Cons ci ratio: 8.786133e-04	ci left: 9.074711e-01	ci right 9.082693e-01	k: 1833899	n:2020000
KS ci ratio: 2.771857e+00	ci left: 1.253357e-08	ci right 2.758236e-06	k: 1	n:2020000
DUSP27   2020000 perm   2258 sec   (894 perm/sec)   p_kst 4.950495e-07   p_cons 9.078708e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.817180e-06	k: 0	n:2030000
Cons ci ratio: 8.763193e-04	ci left: 9.074965e-01	ci right 9.082925e-01	k: 1843027	n:2030000
KS ci ratio: 2.771857e+00	ci left: 1.247183e-08	ci right 2.744649e-06	k: 1	n:2030000
DUSP27   2030000 perm   2278 sec   (891 perm/sec)   p_kst 4.926108e-07   p_cons 9.078951e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.808273e-06	k: 0	n:2040000
Cons ci ratio: 8.741226e-04	ci left: 9.075063e-01	ci right 9.083004e-01	k: 1852124	n:2040000
KS ci ratio: 2.771857e+00	ci left: 1.241069e-08	ci right 2.731195e-06	k: 1	n:2040000
DUSP27   2040000 perm   2296 sec   (888 perm/sec)   p_kst 4.901961e-07   p_cons 9.079039e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.799452e-06	k: 0	n:2050000
Cons ci ratio: 8.719448e-04	ci left: 9.075156e-01	ci right 9.083077e-01	k: 1861220	n:2050000
KS ci ratio: 2.771857e+00	ci left: 1.235015e-08	ci right 2.717872e-06	k: 1	n:2050000
DUSP27   2050000 perm   2315 sec   (886 perm/sec)   p_kst 4.878049e-07   p_cons 9.079122e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.790717e-06	k: 0	n:2060000
Cons ci ratio: 8.698640e-04	ci left: 9.075092e-01	ci right 9.082994e-01	k: 1870284	n:2060000
KS ci ratio: 2.771857e+00	ci left: 1.229020e-08	ci right 2.704678e-06	k: 1	n:2060000
DUSP27   2060000 perm   2333 sec   (883 perm/sec)   p_kst 4.854369e-07   p_cons 9.079049e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.782066e-06	k: 0	n:2070000
Cons ci ratio: 8.677354e-04	ci left: 9.075149e-01	ci right 9.083032e-01	k: 1879373	n:2070000
KS ci ratio: 2.771857e+00	ci left: 1.223083e-08	ci right 2.691612e-06	k: 1	n:2070000
DUSP27   2070000 perm   2352 sec   (880 perm/sec)   p_kst 4.830918e-07   p_cons 9.079097e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.773498e-06	k: 0	n:2080000
Cons ci ratio: 8.655999e-04	ci left: 9.075250e-01	ci right 9.083114e-01	k: 1888471	n:2080000
KS ci ratio: 2.771857e+00	ci left: 1.217202e-08	ci right 2.678672e-06	k: 1	n:2080000
DUSP27   2080000 perm   2372 sec   (877 perm/sec)   p_kst 4.807692e-07   p_cons 9.079187e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.765013e-06	k: 0	n:2090000
Cons ci ratio: 8.635444e-04	ci left: 9.075225e-01	ci right 9.083070e-01	k: 1897543	n:2090000
KS ci ratio: 2.771857e+00	ci left: 1.211378e-08	ci right 2.665855e-06	k: 1	n:2090000
DUSP27   2090000 perm   2391 sec   (874 perm/sec)   p_kst 4.784689e-07   p_cons 9.079153e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.756608e-06	k: 0	n:2100000
Cons ci ratio: 8.614593e-04	ci left: 9.075286e-01	ci right 9.083112e-01	k: 1906633	n:2100000
KS ci ratio: 2.771857e+00	ci left: 1.205610e-08	ci right 2.653161e-06	k: 1	n:2100000
DUSP27   2100000 perm   2411 sec   (871 perm/sec)   p_kst 4.761905e-07   p_cons 9.079205e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.748283e-06	k: 0	n:2110000
Cons ci ratio: 8.593697e-04	ci left: 9.075385e-01	ci right 9.083192e-01	k: 1915731	n:2110000
KS ci ratio: 2.771857e+00	ci left: 1.199896e-08	ci right 2.640586e-06	k: 1	n:2110000
DUSP27   2110000 perm   2432 sec   (868 perm/sec)   p_kst 4.739336e-07   p_cons 9.079294e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.740036e-06	k: 0	n:2120000
Cons ci ratio: 8.573799e-04	ci left: 9.075317e-01	ci right 9.083106e-01	k: 1924794	n:2120000
KS ci ratio: 2.771857e+00	ci left: 1.194236e-08	ci right 2.628131e-06	k: 1	n:2120000
DUSP27   2120000 perm   2452 sec   (864 perm/sec)   p_kst 4.716981e-07   p_cons 9.079217e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.731867e-06	k: 0	n:2130000
Cons ci ratio: 8.553174e-04	ci left: 9.075419e-01	ci right 9.083189e-01	k: 1933893	n:2130000
KS ci ratio: 2.771857e+00	ci left: 1.188629e-08	ci right 2.615792e-06	k: 1	n:2130000
DUSP27   2130000 perm   2472 sec   (862 perm/sec)   p_kst 4.694836e-07   p_cons 9.079310e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.723774e-06	k: 0	n:2140000
Cons ci ratio: 8.533078e-04	ci left: 9.075446e-01	ci right 9.083198e-01	k: 1942976	n:2140000
KS ci ratio: 2.771857e+00	ci left: 1.183075e-08	ci right 2.603569e-06	k: 1	n:2140000
DUSP27   2140000 perm   2492 sec   (859 perm/sec)   p_kst 4.672897e-07   p_cons 9.079327e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.715756e-06	k: 0	n:2150000
Cons ci ratio: 8.513052e-04	ci left: 9.075486e-01	ci right 9.083220e-01	k: 1952062	n:2150000
KS ci ratio: 2.771857e+00	ci left: 1.177572e-08	ci right 2.591459e-06	k: 1	n:2150000
DUSP27   2150000 perm   2512 sec   (856 perm/sec)   p_kst 4.651163e-07   p_cons 9.079358e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.707813e-06	k: 0	n:2160000
Cons ci ratio: 8.494625e-04	ci left: 9.075238e-01	ci right 9.082955e-01	k: 1961086	n:2160000
KS ci ratio: 2.771857e+00	ci left: 1.172121e-08	ci right 2.579462e-06	k: 1	n:2160000
DUSP27   2160000 perm   2532 sec   (853 perm/sec)   p_kst 4.629630e-07   p_cons 9.079102e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.699943e-06	k: 0	n:2170000
Cons ci ratio: 8.475172e-04	ci left: 9.075219e-01	ci right 9.082918e-01	k: 1970159	n:2170000
KS ci ratio: 2.771857e+00	ci left: 1.166719e-08	ci right 2.567575e-06	k: 1	n:2170000
DUSP27   2170000 perm   2552 sec   (850 perm/sec)   p_kst 4.608295e-07   p_cons 9.079074e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.692145e-06	k: 0	n:2180000
Cons ci ratio: 8.456061e-04	ci left: 9.075158e-01	ci right 9.082840e-01	k: 1979223	n:2180000
KS ci ratio: 2.771857e+00	ci left: 1.161367e-08	ci right 2.555797e-06	k: 1	n:2180000
DUSP27   2180000 perm   2573 sec   (847 perm/sec)   p_kst 4.587156e-07   p_cons 9.079005e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.684418e-06	k: 0	n:2190000
Cons ci ratio: 8.437217e-04	ci left: 9.075071e-01	ci right 9.082736e-01	k: 1988281	n:2190000
KS ci ratio: 2.771857e+00	ci left: 1.156064e-08	ci right 2.544127e-06	k: 1	n:2190000
DUSP27   2190000 perm   2594 sec   (844 perm/sec)   p_kst 4.566210e-07   p_cons 9.078909e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.676762e-06	k: 0	n:2200000
Cons ci ratio: 8.418040e-04	ci left: 9.075076e-01	ci right 9.082723e-01	k: 1997359	n:2200000
KS ci ratio: 2.771857e+00	ci left: 1.150809e-08	ci right 2.532563e-06	k: 1	n:2200000
DUSP27   2200000 perm   2614 sec   (842 perm/sec)   p_kst 4.545455e-07   p_cons 9.078905e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.669175e-06	k: 0	n:2210000
Cons ci ratio: 8.398266e-04	ci left: 9.075225e-01	ci right 9.082855e-01	k: 2006469	n:2210000
KS ci ratio: 2.771857e+00	ci left: 1.145602e-08	ci right 2.521103e-06	k: 1	n:2210000
DUSP27   2210000 perm   2634 sec   (839 perm/sec)   p_kst 4.524887e-07   p_cons 9.079045e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.661656e-06	k: 0	n:2220000
Cons ci ratio: 8.378225e-04	ci left: 9.075455e-01	ci right 9.083066e-01	k: 2015597	n:2220000
KS ci ratio: 2.771857e+00	ci left: 1.140442e-08	ci right 2.509747e-06	k: 1	n:2220000
DUSP27   2220000 perm   2656 sec   (836 perm/sec)   p_kst 4.504505e-07   p_cons 9.079266e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.654205e-06	k: 0	n:2230000
Cons ci ratio: 8.359895e-04	ci left: 9.075368e-01	ci right 9.082962e-01	k: 2024655	n:2230000
KS ci ratio: 2.771857e+00	ci left: 1.135328e-08	ci right 2.498492e-06	k: 1	n:2230000
DUSP27   2230000 perm   2678 sec   (833 perm/sec)   p_kst 4.484305e-07   p_cons 9.079170e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.646820e-06	k: 0	n:2240000
Cons ci ratio: 8.340661e-04	ci left: 9.075487e-01	ci right 9.083064e-01	k: 2033759	n:2240000
KS ci ratio: 2.771857e+00	ci left: 1.130259e-08	ci right 2.487338e-06	k: 1	n:2240000
DUSP27   2240000 perm   2698 sec   (830 perm/sec)   p_kst 4.464286e-07   p_cons 9.079281e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.639501e-06	k: 0	n:2250000
Cons ci ratio: 8.320961e-04	ci left: 9.075726e-01	ci right 9.083286e-01	k: 2042890	n:2250000
KS ci ratio: 2.771857e+00	ci left: 1.125236e-08	ci right 2.476283e-06	k: 1	n:2250000
DUSP27   2250000 perm   2719 sec   (828 perm/sec)   p_kst 4.444444e-07   p_cons 9.079511e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.632246e-06	k: 0	n:2260000
Cons ci ratio: 8.303642e-04	ci left: 9.075511e-01	ci right 9.083054e-01	k: 2051919	n:2260000
KS ci ratio: 2.771857e+00	ci left: 1.120257e-08	ci right 2.465326e-06	k: 1	n:2260000
DUSP27   2260000 perm   2739 sec   (825 perm/sec)   p_kst 4.424779e-07   p_cons 9.079288e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.625056e-06	k: 0	n:2270000
Cons ci ratio: 8.285403e-04	ci left: 9.075505e-01	ci right 9.083031e-01	k: 2060995	n:2270000
KS ci ratio: 2.771857e+00	ci left: 1.115322e-08	ci right 2.454466e-06	k: 1	n:2270000
DUSP27   2270000 perm   2759 sec   (823 perm/sec)   p_kst 4.405286e-07   p_cons 9.079273e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.617928e-06	k: 0	n:2280000
Cons ci ratio: 8.266460e-04	ci left: 9.075665e-01	ci right 9.083175e-01	k: 2070109	n:2280000
KS ci ratio: 2.771857e+00	ci left: 1.110430e-08	ci right 2.443701e-06	k: 1	n:2280000
DUSP27   2280000 perm   2779 sec   (820 perm/sec)   p_kst 4.385965e-07   p_cons 9.079425e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.610863e-06	k: 0	n:2290000
Cons ci ratio: 8.247905e-04	ci left: 9.075772e-01	ci right 9.083265e-01	k: 2079211	n:2290000
KS ci ratio: 2.771857e+00	ci left: 1.105581e-08	ci right 2.433030e-06	k: 1	n:2290000
DUSP27   2290000 perm   2800 sec   (818 perm/sec)   p_kst 4.366812e-07   p_cons 9.079524e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.603859e-06	k: 0	n:2300000
Cons ci ratio: 8.229902e-04	ci left: 9.075791e-01	ci right 9.083268e-01	k: 2088293	n:2300000
KS ci ratio: 2.771857e+00	ci left: 1.100774e-08	ci right 2.422451e-06	k: 1	n:2300000
DUSP27   2300000 perm   2821 sec   (815 perm/sec)   p_kst 4.347826e-07   p_cons 9.079535e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.596916e-06	k: 0	n:2310000
Cons ci ratio: 8.212995e-04	ci left: 9.075611e-01	ci right 9.083072e-01	k: 2097329	n:2310000
KS ci ratio: 2.771857e+00	ci left: 1.096009e-08	ci right 2.411964e-06	k: 1	n:2310000
DUSP27   2310000 perm   2842 sec   (813 perm/sec)   p_kst 4.329004e-07   p_cons 9.079346e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.590033e-06	k: 0	n:2320000
Cons ci ratio: 8.194755e-04	ci left: 9.075725e-01	ci right 9.083170e-01	k: 2106433	n:2320000
KS ci ratio: 2.771857e+00	ci left: 1.091285e-08	ci right 2.401568e-06	k: 1	n:2320000
DUSP27   2320000 perm   2863 sec   (810 perm/sec)   p_kst 4.310345e-07   p_cons 9.079453e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.583209e-06	k: 0	n:2330000
Cons ci ratio: 8.177223e-04	ci left: 9.075718e-01	ci right 9.083147e-01	k: 2115509	n:2330000
KS ci ratio: 2.771857e+00	ci left: 1.086601e-08	ci right 2.391261e-06	k: 1	n:2330000
DUSP27   2330000 perm   2884 sec   (808 perm/sec)   p_kst 4.291845e-07   p_cons 9.079438e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.576443e-06	k: 0	n:2340000
Cons ci ratio: 8.158656e-04	ci left: 9.075947e-01	ci right 9.083359e-01	k: 2124640	n:2340000
KS ci ratio: 2.771857e+00	ci left: 1.081958e-08	ci right 2.381042e-06	k: 1	n:2340000
DUSP27   2340000 perm   2904 sec   (806 perm/sec)   p_kst 4.273504e-07   p_cons 9.079658e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.569735e-06	k: 0	n:2350000
Cons ci ratio: 8.142183e-04	ci left: 9.075769e-01	ci right 9.083166e-01	k: 2133676	n:2350000
KS ci ratio: 2.771857e+00	ci left: 1.077354e-08	ci right 2.370910e-06	k: 1	n:2350000
DUSP27   2350000 perm   2926 sec   (803 perm/sec)   p_kst 4.255319e-07   p_cons 9.079472e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.563083e-06	k: 0	n:2360000
Cons ci ratio: 8.124615e-04	ci left: 9.075838e-01	ci right 9.083219e-01	k: 2142770	n:2360000
KS ci ratio: 2.771857e+00	ci left: 1.072788e-08	ci right 2.360864e-06	k: 1	n:2360000
DUSP27   2360000 perm   2947 sec   (801 perm/sec)   p_kst 4.237288e-07   p_cons 9.079534e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.556488e-06	k: 0	n:2370000
Cons ci ratio: 8.107222e-04	ci left: 9.075895e-01	ci right 9.083260e-01	k: 2151861	n:2370000
KS ci ratio: 2.771857e+00	ci left: 1.068262e-08	ci right 2.350902e-06	k: 1	n:2370000
DUSP27   2370000 perm   2968 sec   (798 perm/sec)   p_kst 4.219409e-07   p_cons 9.079582e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.549948e-06	k: 0	n:2380000
Cons ci ratio: 8.091465e-04	ci left: 9.075635e-01	ci right 9.082985e-01	k: 2160877	n:2380000
KS ci ratio: 2.771857e+00	ci left: 1.063773e-08	ci right 2.341024e-06	k: 1	n:2380000
DUSP27   2380000 perm   2990 sec   (796 perm/sec)   p_kst 4.201681e-07   p_cons 9.079315e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.543463e-06	k: 0	n:2390000
Cons ci ratio: 8.075435e-04	ci left: 9.075453e-01	ci right 9.082788e-01	k: 2169911	n:2390000
KS ci ratio: 2.771857e+00	ci left: 1.059323e-08	ci right 2.331229e-06	k: 1	n:2390000
DUSP27   2390000 perm   3013 sec   (793 perm/sec)   p_kst 4.184100e-07   p_cons 9.079126e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.537032e-06	k: 0	n:2400000
Cons ci ratio: 8.058998e-04	ci left: 9.075376e-01	ci right 9.082697e-01	k: 2178970	n:2400000
KS ci ratio: 2.771857e+00	ci left: 1.054909e-08	ci right 2.321516e-06	k: 1	n:2400000
DUSP27   2400000 perm   3034 sec   (791 perm/sec)   p_kst 4.166667e-07   p_cons 9.079042e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.530654e-06	k: 0	n:2410000
Cons ci ratio: 8.041583e-04	ci left: 9.075525e-01	ci right 9.082830e-01	k: 2188083	n:2410000
KS ci ratio: 2.771857e+00	ci left: 1.050531e-08	ci right 2.311883e-06	k: 1	n:2410000
DUSP27   2410000 perm   3056 sec   (789 perm/sec)   p_kst 4.149378e-07   p_cons 9.079183e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.524329e-06	k: 0	n:2420000
Cons ci ratio: 8.024875e-04	ci left: 9.075548e-01	ci right 9.082838e-01	k: 2197166	n:2420000
KS ci ratio: 2.771857e+00	ci left: 1.046190e-08	ci right 2.302330e-06	k: 1	n:2420000
DUSP27   2420000 perm   3078 sec   (786 perm/sec)   p_kst 4.132231e-07   p_cons 9.079198e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.518056e-06	k: 0	n:2430000
Cons ci ratio: 8.008133e-04	ci left: 9.075601e-01	ci right 9.082875e-01	k: 2206256	n:2430000
KS ci ratio: 2.771857e+00	ci left: 1.041885e-08	ci right 2.292855e-06	k: 1	n:2430000
DUSP27   2430000 perm   3100 sec   (784 perm/sec)   p_kst 4.115226e-07   p_cons 9.079243e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.511835e-06	k: 0	n:2440000
Cons ci ratio: 7.991535e-04	ci left: 9.075644e-01	ci right 9.082904e-01	k: 2215344	n:2440000
KS ci ratio: 2.771857e+00	ci left: 1.037615e-08	ci right 2.283458e-06	k: 1	n:2440000
DUSP27   2440000 perm   3122 sec   (781 perm/sec)   p_kst 4.098361e-07   p_cons 9.079279e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.505664e-06	k: 0	n:2450000
Cons ci ratio: 7.974201e-04	ci left: 9.075863e-01	ci right 9.083107e-01	k: 2224475	n:2450000
KS ci ratio: 2.771857e+00	ci left: 1.033380e-08	ci right 2.274138e-06	k: 1	n:2450000
DUSP27   2450000 perm   3144 sec   (779 perm/sec)   p_kst 4.081633e-07   p_cons 9.079490e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.499543e-06	k: 0	n:2460000
Cons ci ratio: 7.957813e-04	ci left: 9.075905e-01	ci right 9.083134e-01	k: 2233563	n:2460000
KS ci ratio: 2.771857e+00	ci left: 1.029179e-08	ci right 2.264894e-06	k: 1	n:2460000
DUSP27   2460000 perm   3167 sec   (777 perm/sec)   p_kst 4.065041e-07   p_cons 9.079524e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.493472e-06	k: 0	n:2470000
Cons ci ratio: 7.942698e-04	ci left: 9.075699e-01	ci right 9.082915e-01	k: 2242590	n:2470000
KS ci ratio: 2.771857e+00	ci left: 1.025012e-08	ci right 2.255724e-06	k: 1	n:2470000
DUSP27   2470000 perm   3189 sec   (775 perm/sec)   p_kst 4.048583e-07   p_cons 9.079312e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.487450e-06	k: 0	n:2480000
Cons ci ratio: 7.926712e-04	ci left: 9.075697e-01	ci right 9.082898e-01	k: 2251667	n:2480000
KS ci ratio: 2.771857e+00	ci left: 1.020879e-08	ci right 2.246628e-06	k: 1	n:2480000
DUSP27   2480000 perm   3211 sec   (772 perm/sec)   p_kst 4.032258e-07   p_cons 9.079302e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.481477e-06	k: 0	n:2490000
Cons ci ratio: 7.910157e-04	ci left: 9.075836e-01	ci right 9.083022e-01	k: 2260779	n:2490000
KS ci ratio: 2.771857e+00	ci left: 1.016779e-08	ci right 2.237606e-06	k: 1	n:2490000
DUSP27   2490000 perm   3233 sec   (770 perm/sec)   p_kst 4.016064e-07   p_cons 9.079434e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.475551e-06	k: 0	n:2500000
Cons ci ratio: 7.894197e-04	ci left: 9.075870e-01	ci right 9.083041e-01	k: 2269865	n:2500000
KS ci ratio: 2.771857e+00	ci left: 1.012712e-08	ci right 2.228655e-06	k: 1	n:2500000
DUSP27   2500000 perm   3255 sec   (768 perm/sec)   p_kst 4.000000e-07   p_cons 9.079460e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.469672e-06	k: 0	n:2510000
Cons ci ratio: 7.877826e-04	ci left: 9.076011e-01	ci right 9.083167e-01	k: 2278978	n:2510000
KS ci ratio: 2.771857e+00	ci left: 1.008678e-08	ci right 2.219776e-06	k: 1	n:2510000
DUSP27   2510000 perm   3279 sec   (765 perm/sec)   p_kst 3.984064e-07   p_cons 9.079594e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.463840e-06	k: 0	n:2520000
Cons ci ratio: 7.861687e-04	ci left: 9.076123e-01	ci right 9.083265e-01	k: 2288084	n:2520000
KS ci ratio: 2.771857e+00	ci left: 1.004675e-08	ci right 2.210968e-06	k: 1	n:2520000
DUSP27   2520000 perm   3302 sec   (763 perm/sec)   p_kst 3.968254e-07   p_cons 9.079698e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.458054e-06	k: 0	n:2530000
Cons ci ratio: 7.846834e-04	ci left: 9.075981e-01	ci right 9.083109e-01	k: 2297126	n:2530000
KS ci ratio: 2.771857e+00	ci left: 1.000704e-08	ci right 2.202229e-06	k: 1	n:2530000
DUSP27   2530000 perm   3324 sec   (761 perm/sec)   p_kst 3.952569e-07   p_cons 9.079549e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.452314e-06	k: 0	n:2540000
Cons ci ratio: 7.831290e-04	ci left: 9.076005e-01	ci right 9.083119e-01	k: 2306210	n:2540000
KS ci ratio: 2.771857e+00	ci left: 9.967641e-09	ci right 2.193558e-06	k: 1	n:2540000
DUSP27   2540000 perm   3346 sec   (759 perm/sec)   p_kst 3.937008e-07   p_cons 9.079567e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.446618e-06	k: 0	n:2550000
Cons ci ratio: 7.814867e-04	ci left: 9.076238e-01	ci right 9.083337e-01	k: 2315347	n:2550000
KS ci ratio: 2.771857e+00	ci left: 9.928552e-09	ci right 2.184956e-06	k: 1	n:2550000
DUSP27   2550000 perm   3369 sec   (757 perm/sec)   p_kst 3.921569e-07   p_cons 9.079792e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.440968e-06	k: 0	n:2560000
Cons ci ratio: 7.799329e-04	ci left: 9.076300e-01	ci right 9.083386e-01	k: 2324441	n:2560000
KS ci ratio: 2.771857e+00	ci left: 9.889769e-09	ci right 2.176421e-06	k: 1	n:2560000
DUSP27   2560000 perm   3392 sec   (755 perm/sec)   p_kst 3.906250e-07   p_cons 9.079848e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.435361e-06	k: 0	n:2570000
Cons ci ratio: 7.784192e-04	ci left: 9.076296e-01	ci right 9.083368e-01	k: 2333518	n:2570000
KS ci ratio: 2.771857e+00	ci left: 9.851287e-09	ci right 2.167953e-06	k: 1	n:2570000
DUSP27   2570000 perm   3414 sec   (753 perm/sec)   p_kst 3.891051e-07   p_cons 9.079837e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.429797e-06	k: 0	n:2580000
Cons ci ratio: 7.769323e-04	ci left: 9.076253e-01	ci right 9.083311e-01	k: 2342585	n:2580000
KS ci ratio: 2.771857e+00	ci left: 9.813104e-09	ci right 2.159550e-06	k: 1	n:2580000
DUSP27   2580000 perm   3437 sec   (751 perm/sec)   p_kst 3.875969e-07   p_cons 9.079787e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.424277e-06	k: 0	n:2590000
Cons ci ratio: 7.754503e-04	ci left: 9.076218e-01	ci right 9.083263e-01	k: 2351654	n:2590000
KS ci ratio: 2.771857e+00	ci left: 9.775216e-09	ci right 2.151212e-06	k: 1	n:2590000
DUSP27   2590000 perm   3459 sec   (749 perm/sec)   p_kst 3.861004e-07   p_cons 9.079745e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.418799e-06	k: 0	n:2600000
Cons ci ratio: 7.739340e-04	ci left: 9.076276e-01	ci right 9.083307e-01	k: 2360747	n:2600000
KS ci ratio: 2.771857e+00	ci left: 9.737618e-09	ci right 2.142938e-06	k: 1	n:2600000
DUSP27   2600000 perm   3483 sec   (746 perm/sec)   p_kst 3.846154e-07   p_cons 9.079796e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.413363e-06	k: 0	n:2610000
Cons ci ratio: 7.724815e-04	ci left: 9.076215e-01	ci right 9.083232e-01	k: 2369809	n:2610000
KS ci ratio: 2.771857e+00	ci left: 9.700310e-09	ci right 2.134727e-06	k: 1	n:2610000
DUSP27   2610000 perm   3506 sec   (744 perm/sec)   p_kst 3.831418e-07   p_cons 9.079728e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.407968e-06	k: 0	n:2620000
Cons ci ratio: 7.709860e-04	ci left: 9.076264e-01	ci right 9.083269e-01	k: 2378900	n:2620000
KS ci ratio: 2.771857e+00	ci left: 9.663285e-09	ci right 2.126580e-06	k: 1	n:2620000
DUSP27   2620000 perm   3528 sec   (743 perm/sec)   p_kst 3.816794e-07   p_cons 9.079771e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.402615e-06	k: 0	n:2630000
Cons ci ratio: 7.694239e-04	ci left: 9.076478e-01	ci right 9.083468e-01	k: 2388034	n:2630000
KS ci ratio: 2.771857e+00	ci left: 9.626543e-09	ci right 2.118494e-06	k: 1	n:2630000
DUSP27   2630000 perm   3552 sec   (741 perm/sec)   p_kst 3.802281e-07   p_cons 9.079977e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.397302e-06	k: 0	n:2640000
Cons ci ratio: 7.678590e-04	ci left: 9.076716e-01	ci right 9.083692e-01	k: 2397175	n:2640000
KS ci ratio: 2.771857e+00	ci left: 9.590079e-09	ci right 2.110469e-06	k: 1	n:2640000
DUSP27   2640000 perm   3575 sec   (738 perm/sec)   p_kst 3.787879e-07   p_cons 9.080208e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.392029e-06	k: 0	n:2650000
Cons ci ratio: 7.662794e-04	ci left: 9.077005e-01	ci right 9.083967e-01	k: 2406330	n:2650000
KS ci ratio: 2.771857e+00	ci left: 9.553890e-09	ci right 2.102505e-06	k: 1	n:2650000
DUSP27   2650000 perm   3598 sec   (737 perm/sec)   p_kst 3.773585e-07   p_cons 9.080491e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.386796e-06	k: 0	n:2660000
Cons ci ratio: 7.648729e-04	ci left: 9.076935e-01	ci right 9.083884e-01	k: 2415390	n:2660000
KS ci ratio: 2.771857e+00	ci left: 9.517973e-09	ci right 2.094601e-06	k: 1	n:2660000
DUSP27   2660000 perm   3621 sec   (735 perm/sec)   p_kst 3.759398e-07   p_cons 9.080414e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.381602e-06	k: 0	n:2670000
Cons ci ratio: 7.633749e-04	ci left: 9.077082e-01	ci right 9.084018e-01	k: 2424508	n:2670000
KS ci ratio: 2.771857e+00	ci left: 9.482325e-09	ci right 2.086756e-06	k: 1	n:2670000
DUSP27   2670000 perm   3644 sec   (733 perm/sec)   p_kst 3.745318e-07   p_cons 9.080554e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.376447e-06	k: 0	n:2680000
Cons ci ratio: 7.619911e-04	ci left: 9.076997e-01	ci right 9.083920e-01	k: 2433564	n:2680000
KS ci ratio: 2.771857e+00	ci left: 9.446943e-09	ci right 2.078970e-06	k: 1	n:2680000
DUSP27   2680000 perm   3667 sec   (731 perm/sec)   p_kst 3.731343e-07   p_cons 9.080463e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.371330e-06	k: 0	n:2690000
Cons ci ratio: 7.606149e-04	ci left: 9.076912e-01	ci right 9.083822e-01	k: 2442620	n:2690000
KS ci ratio: 2.771857e+00	ci left: 9.411825e-09	ci right 2.071241e-06	k: 1	n:2690000
DUSP27   2690000 perm   3691 sec   (729 perm/sec)   p_kst 3.717472e-07   p_cons 9.080372e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.366251e-06	k: 0	n:2700000
Cons ci ratio: 7.592545e-04	ci left: 9.076810e-01	ci right 9.083707e-01	k: 2451671	n:2700000
KS ci ratio: 2.771857e+00	ci left: 9.376966e-09	ci right 2.063570e-06	k: 1	n:2700000
DUSP27   2700000 perm   3714 sec   (727 perm/sec)   p_kst 3.703704e-07   p_cons 9.080263e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.361209e-06	k: 0	n:2710000
Cons ci ratio: 7.578946e-04	ci left: 9.076723e-01	ci right 9.083608e-01	k: 2460726	n:2710000
KS ci ratio: 2.771857e+00	ci left: 9.342365e-09	ci right 2.055955e-06	k: 1	n:2710000
DUSP27   2710000 perm   3738 sec   (725 perm/sec)   p_kst 3.690037e-07   p_cons 9.080170e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.356205e-06	k: 0	n:2720000
Cons ci ratio: 7.564871e-04	ci left: 9.076758e-01	ci right 9.083630e-01	k: 2469814	n:2720000
KS ci ratio: 2.771857e+00	ci left: 9.308018e-09	ci right 2.048397e-06	k: 1	n:2720000
DUSP27   2720000 perm   3761 sec   (723 perm/sec)   p_kst 3.676471e-07   p_cons 9.080199e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.351237e-06	k: 0	n:2730000
Cons ci ratio: 7.551106e-04	ci left: 9.076741e-01	ci right 9.083602e-01	k: 2478888	n:2730000
KS ci ratio: 2.771857e+00	ci left: 9.273922e-09	ci right 2.040893e-06	k: 1	n:2730000
DUSP27   2730000 perm   3792 sec   (720 perm/sec)   p_kst 3.663004e-07   p_cons 9.080176e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.346305e-06	k: 0	n:2740000
Cons ci ratio: 7.537202e-04	ci left: 9.076773e-01	ci right 9.083620e-01	k: 2487975	n:2740000
KS ci ratio: 2.771857e+00	ci left: 9.240076e-09	ci right 2.033445e-06	k: 1	n:2740000
DUSP27   2740000 perm   3816 sec   (718 perm/sec)   p_kst 3.649635e-07   p_cons 9.080201e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.341410e-06	k: 0	n:2750000
Cons ci ratio: 7.523914e-04	ci left: 9.076684e-01	ci right 9.083519e-01	k: 2497029	n:2750000
KS ci ratio: 2.771857e+00	ci left: 9.206476e-09	ci right 2.026050e-06	k: 1	n:2750000
DUSP27   2750000 perm   3840 sec   (716 perm/sec)   p_kst 3.636364e-07   p_cons 9.080105e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.336550e-06	k: 0	n:2760000
Cons ci ratio: 7.510355e-04	ci left: 9.076671e-01	ci right 9.083494e-01	k: 2506104	n:2760000
KS ci ratio: 2.771857e+00	ci left: 9.173119e-09	ci right 2.018710e-06	k: 1	n:2760000
DUSP27   2760000 perm   3863 sec   (714 perm/sec)   p_kst 3.623188e-07   p_cons 9.080087e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.331725e-06	k: 0	n:2770000
Cons ci ratio: 7.497176e-04	ci left: 9.076590e-01	ci right 9.083401e-01	k: 2515160	n:2770000
KS ci ratio: 2.771857e+00	ci left: 9.140003e-09	ci right 2.011422e-06	k: 1	n:2770000
DUSP27   2770000 perm   3887 sec   (713 perm/sec)   p_kst 3.610108e-07   p_cons 9.080000e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.326934e-06	k: 0	n:2780000
Cons ci ratio: 7.484566e-04	ci left: 9.076398e-01	ci right 9.083198e-01	k: 2524185	n:2780000
KS ci ratio: 2.771857e+00	ci left: 9.107125e-09	ci right 2.004187e-06	k: 1	n:2780000
DUSP27   2780000 perm   3911 sec   (711 perm/sec)   p_kst 3.597122e-07   p_cons 9.079802e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.322178e-06	k: 0	n:2790000
Cons ci ratio: 7.471266e-04	ci left: 9.076376e-01	ci right 9.083164e-01	k: 2533257	n:2790000
KS ci ratio: 2.771857e+00	ci left: 9.074483e-09	ci right 1.997003e-06	k: 1	n:2790000
DUSP27   2790000 perm   3935 sec   (709 perm/sec)   p_kst 3.584229e-07   p_cons 9.079774e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.317456e-06	k: 0	n:2800000
Cons ci ratio: 7.458355e-04	ci left: 9.076283e-01	ci right 9.083058e-01	k: 2542309	n:2800000
KS ci ratio: 2.771857e+00	ci left: 9.042074e-09	ci right 1.989871e-06	k: 1	n:2800000
DUSP27   2800000 perm   3960 sec   (707 perm/sec)   p_kst 3.571429e-07   p_cons 9.079675e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.312768e-06	k: 0	n:2810000
Cons ci ratio: 7.445510e-04	ci left: 9.076190e-01	ci right 9.082954e-01	k: 2551361	n:2810000
KS ci ratio: 2.771857e+00	ci left: 9.009896e-09	ci right 1.982790e-06	k: 1	n:2810000
DUSP27   2810000 perm   3984 sec   (705 perm/sec)   p_kst 3.558719e-07   p_cons 9.079577e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.308112e-06	k: 0	n:2820000
Cons ci ratio: 7.432291e-04	ci left: 9.076198e-01	ci right 9.082950e-01	k: 2560441	n:2820000
KS ci ratio: 2.771857e+00	ci left: 8.977946e-09	ci right 1.975758e-06	k: 1	n:2820000
DUSP27   2820000 perm   4009 sec   (703 perm/sec)   p_kst 3.546099e-07   p_cons 9.079578e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.303490e-06	k: 0	n:2830000
Cons ci ratio: 7.419267e-04	ci left: 9.076177e-01	ci right 9.082917e-01	k: 2569513	n:2830000
KS ci ratio: 2.771857e+00	ci left: 8.946222e-09	ci right 1.968777e-06	k: 1	n:2830000
DUSP27   2830000 perm   4033 sec   (702 perm/sec)   p_kst 3.533569e-07   p_cons 9.079551e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.298900e-06	k: 0	n:2840000
Cons ci ratio: 7.406311e-04	ci left: 9.076157e-01	ci right 9.082884e-01	k: 2578585	n:2840000
KS ci ratio: 2.771857e+00	ci left: 8.914721e-09	ci right 1.961845e-06	k: 1	n:2840000
DUSP27   2840000 perm   4059 sec   (700 perm/sec)   p_kst 3.521127e-07   p_cons 9.079525e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.294343e-06	k: 0	n:2850000
Cons ci ratio: 7.394012e-04	ci left: 9.076002e-01	ci right 9.082719e-01	k: 2587619	n:2850000
KS ci ratio: 2.771857e+00	ci left: 8.883441e-09	ci right 1.954961e-06	k: 1	n:2850000
DUSP27   2850000 perm   4083 sec   (698 perm/sec)   p_kst 3.508772e-07   p_cons 9.079365e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.289817e-06	k: 0	n:2860000
Cons ci ratio: 7.381729e-04	ci left: 9.075860e-01	ci right 9.082565e-01	k: 2596656	n:2860000
KS ci ratio: 2.771857e+00	ci left: 8.852380e-09	ci right 1.948126e-06	k: 1	n:2860000
DUSP27   2860000 perm   4108 sec   (696 perm/sec)   p_kst 3.496503e-07   p_cons 9.079217e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.285323e-06	k: 0	n:2870000
Cons ci ratio: 7.368262e-04	ci left: 9.076001e-01	ci right 9.082694e-01	k: 2605774	n:2870000
KS ci ratio: 2.771857e+00	ci left: 8.821536e-09	ci right 1.941338e-06	k: 1	n:2870000
DUSP27   2870000 perm   4134 sec   (694 perm/sec)   p_kst 3.484321e-07   p_cons 9.079352e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.280860e-06	k: 0	n:2880000
Cons ci ratio: 7.355433e-04	ci left: 9.076013e-01	ci right 9.082694e-01	k: 2614855	n:2880000
KS ci ratio: 2.771857e+00	ci left: 8.790905e-09	ci right 1.934597e-06	k: 1	n:2880000
DUSP27   2880000 perm   4163 sec   (692 perm/sec)   p_kst 3.472222e-07   p_cons 9.079358e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.276428e-06	k: 0	n:2890000
Cons ci ratio: 7.342747e-04	ci left: 9.076007e-01	ci right 9.082677e-01	k: 2623931	n:2890000
KS ci ratio: 2.771857e+00	ci left: 8.760487e-09	ci right 1.927903e-06	k: 1	n:2890000
DUSP27   2890000 perm   4201 sec   (688 perm/sec)   p_kst 3.460208e-07   p_cons 9.079346e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.272027e-06	k: 0	n:2900000
Cons ci ratio: 7.331064e-04	ci left: 9.075787e-01	ci right 9.082446e-01	k: 2632945	n:2900000
KS ci ratio: 2.771857e+00	ci left: 8.730279e-09	ci right 1.921255e-06	k: 1	n:2900000
DUSP27   2900000 perm   4227 sec   (686 perm/sec)   p_kst 3.448276e-07   p_cons 9.079121e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.267655e-06	k: 0	n:2910000
Cons ci ratio: 7.318579e-04	ci left: 9.075765e-01	ci right 9.082413e-01	k: 2642016	n:2910000
KS ci ratio: 2.771857e+00	ci left: 8.700278e-09	ci right 1.914653e-06	k: 1	n:2910000
DUSP27   2910000 perm   4252 sec   (684 perm/sec)   p_kst 3.436426e-07   p_cons 9.079093e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.263314e-06	k: 0	n:2920000
Cons ci ratio: 7.306023e-04	ci left: 9.075774e-01	ci right 9.082410e-01	k: 2651096	n:2920000
KS ci ratio: 2.771857e+00	ci left: 8.670482e-09	ci right 1.908096e-06	k: 1	n:2920000
DUSP27   2920000 perm   4278 sec   (683 perm/sec)   p_kst 3.424658e-07   p_cons 9.079096e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.259002e-06	k: 0	n:2930000
Cons ci ratio: 7.292862e-04	ci left: 9.075936e-01	ci right 9.082561e-01	k: 2660221	n:2930000
KS ci ratio: 2.771857e+00	ci left: 8.640890e-09	ci right 1.901583e-06	k: 1	n:2930000
DUSP27   2930000 perm   4303 sec   (681 perm/sec)   p_kst 3.412969e-07   p_cons 9.079253e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.254720e-06	k: 0	n:2940000
Cons ci ratio: 7.279933e-04	ci left: 9.076060e-01	ci right 9.082673e-01	k: 2669335	n:2940000
KS ci ratio: 2.771857e+00	ci left: 8.611499e-09	ci right 1.895115e-06	k: 1	n:2940000
DUSP27   2940000 perm   4331 sec   (679 perm/sec)   p_kst 3.401361e-07   p_cons 9.079371e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.250467e-06	k: 0	n:2950000
Cons ci ratio: 7.267457e-04	ci left: 9.076095e-01	ci right 9.082697e-01	k: 2678423	n:2950000
KS ci ratio: 2.771857e+00	ci left: 8.582308e-09	ci right 1.888691e-06	k: 1	n:2950000
DUSP27   2950000 perm   4358 sec   (677 perm/sec)   p_kst 3.389831e-07   p_cons 9.079400e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.246242e-06	k: 0	n:2960000
Cons ci ratio: 7.255748e-04	ci left: 9.075967e-01	ci right 9.082558e-01	k: 2687463	n:2960000
KS ci ratio: 2.771857e+00	ci left: 8.553313e-09	ci right 1.882311e-06	k: 1	n:2960000
DUSP27   2960000 perm   4383 sec   (675 perm/sec)   p_kst 3.378378e-07   p_cons 9.079267e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.242046e-06	k: 0	n:2970000
Cons ci ratio: 7.244854e-04	ci left: 9.075665e-01	ci right 9.082246e-01	k: 2696451	n:2970000
KS ci ratio: 2.771857e+00	ci left: 8.524514e-09	ci right 1.875973e-06	k: 1	n:2970000
DUSP27   2970000 perm   4412 sec   (673 perm/sec)   p_kst 3.367003e-07   p_cons 9.078960e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.237878e-06	k: 0	n:2980000
Cons ci ratio: 7.232165e-04	ci left: 9.075792e-01	ci right 9.082361e-01	k: 2705566	n:2980000
KS ci ratio: 2.771857e+00	ci left: 8.495909e-09	ci right 1.869678e-06	k: 1	n:2980000
DUSP27   2980000 perm   4438 sec   (672 perm/sec)   p_kst 3.355705e-07   p_cons 9.079081e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.233738e-06	k: 0	n:2990000
Cons ci ratio: 7.220177e-04	ci left: 9.075770e-01	ci right 9.082329e-01	k: 2714637	n:2990000
KS ci ratio: 2.771857e+00	ci left: 8.467494e-09	ci right 1.863424e-06	k: 1	n:2990000
DUSP27   2990000 perm   4466 sec   (670 perm/sec)   p_kst 3.344482e-07   p_cons 9.079054e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.229626e-06	k: 0	n:3000000
Cons ci ratio: 7.208135e-04	ci left: 9.075776e-01	ci right 9.082323e-01	k: 2723716	n:3000000
KS ci ratio: 2.771857e+00	ci left: 8.439269e-09	ci right 1.857213e-06	k: 1	n:3000000
DUSP27   3000000 perm   4492 sec   (668 perm/sec)   p_kst 3.333333e-07   p_cons 9.079053e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.225541e-06	k: 0	n:3010000
Cons ci ratio: 7.196223e-04	ci left: 9.075764e-01	ci right 9.082301e-01	k: 2732790	n:3010000
KS ci ratio: 2.771857e+00	ci left: 8.411232e-09	ci right 1.851043e-06	k: 1	n:3010000
DUSP27   3010000 perm   4518 sec   (666 perm/sec)   p_kst 3.322259e-07   p_cons 9.079037e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.221483e-06	k: 0	n:3020000
Cons ci ratio: 7.184556e-04	ci left: 9.075710e-01	ci right 9.082236e-01	k: 2741851	n:3020000
KS ci ratio: 2.771857e+00	ci left: 8.383380e-09	ci right 1.844914e-06	k: 1	n:3020000
DUSP27   3020000 perm   4545 sec   (664 perm/sec)   p_kst 3.311258e-07   p_cons 9.078977e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.217451e-06	k: 0	n:3030000
Cons ci ratio: 7.172492e-04	ci left: 9.075762e-01	ci right 9.082277e-01	k: 2750944	n:3030000
KS ci ratio: 2.771857e+00	ci left: 8.355712e-09	ci right 1.838825e-06	k: 1	n:3030000
DUSP27   3030000 perm   4572 sec   (663 perm/sec)   p_kst 3.300330e-07   p_cons 9.079023e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.213446e-06	k: 0	n:3040000
Cons ci ratio: 7.160305e-04	ci left: 9.075856e-01	ci right 9.082360e-01	k: 2760050	n:3040000
KS ci ratio: 2.771857e+00	ci left: 8.328226e-09	ci right 1.832776e-06	k: 1	n:3040000
DUSP27   3040000 perm   4600 sec   (661 perm/sec)   p_kst 3.289474e-07   p_cons 9.079112e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.209468e-06	k: 0	n:3050000
Cons ci ratio: 7.148517e-04	ci left: 9.075871e-01	ci right 9.082364e-01	k: 2769132	n:3050000
KS ci ratio: 2.771857e+00	ci left: 8.300921e-09	ci right 1.826767e-06	k: 1	n:3050000
DUSP27   3050000 perm   4628 sec   (659 perm/sec)   p_kst 3.278689e-07   p_cons 9.079121e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.205515e-06	k: 0	n:3060000
Cons ci ratio: 7.136465e-04	ci left: 9.075961e-01	ci right 9.082443e-01	k: 2778237	n:3060000
KS ci ratio: 2.771857e+00	ci left: 8.273793e-09	ci right 1.820797e-06	k: 1	n:3060000
DUSP27   3060000 perm   4656 sec   (657 perm/sec)   p_kst 3.267974e-07   p_cons 9.079206e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.201589e-06	k: 0	n:3070000
Cons ci ratio: 7.124572e-04	ci left: 9.076027e-01	ci right 9.082499e-01	k: 2787335	n:3070000
KS ci ratio: 2.771857e+00	ci left: 8.246843e-09	ci right 1.814866e-06	k: 1	n:3070000
DUSP27   3070000 perm   4685 sec   (655 perm/sec)   p_kst 3.257329e-07   p_cons 9.079267e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.197687e-06	k: 0	n:3080000
Cons ci ratio: 7.113111e-04	ci left: 9.076006e-01	ci right 9.082467e-01	k: 2796406	n:3080000
KS ci ratio: 2.771857e+00	ci left: 8.220068e-09	ci right 1.808974e-06	k: 1	n:3080000
DUSP27   3080000 perm   4713 sec   (654 perm/sec)   p_kst 3.246753e-07   p_cons 9.079240e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.193811e-06	k: 0	n:3090000
Cons ci ratio: 7.101403e-04	ci left: 9.076056e-01	ci right 9.082506e-01	k: 2805499	n:3090000
KS ci ratio: 2.771857e+00	ci left: 8.193465e-09	ci right 1.803120e-06	k: 1	n:3090000
DUSP27   3090000 perm   4740 sec   (652 perm/sec)   p_kst 3.236246e-07   p_cons 9.079285e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.189960e-06	k: 0	n:3100000
Cons ci ratio: 7.089684e-04	ci left: 9.076121e-01	ci right 9.082561e-01	k: 2814597	n:3100000
KS ci ratio: 2.771857e+00	ci left: 8.167035e-09	ci right 1.797303e-06	k: 1	n:3100000
DUSP27   3100000 perm   4767 sec   (650 perm/sec)   p_kst 3.225806e-07   p_cons 9.079345e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.186134e-06	k: 0	n:3110000
Cons ci ratio: 7.077940e-04	ci left: 9.076206e-01	ci right 9.082635e-01	k: 2823701	n:3110000
KS ci ratio: 2.771857e+00	ci left: 8.140774e-09	ci right 1.791524e-06	k: 1	n:3110000
DUSP27   3110000 perm   4795 sec   (649 perm/sec)   p_kst 3.215434e-07   p_cons 9.079424e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.182332e-06	k: 0	n:3120000
Cons ci ratio: 7.066621e-04	ci left: 9.076203e-01	ci right 9.082622e-01	k: 2832778	n:3120000
KS ci ratio: 2.771857e+00	ci left: 8.114682e-09	ci right 1.785782e-06	k: 1	n:3120000
DUSP27   3120000 perm   4822 sec   (647 perm/sec)   p_kst 3.205128e-07   p_cons 9.079417e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.178555e-06	k: 0	n:3130000
Cons ci ratio: 7.055815e-04	ci left: 9.076092e-01	ci right 9.082501e-01	k: 2841821	n:3130000
KS ci ratio: 2.771857e+00	ci left: 8.088757e-09	ci right 1.780076e-06	k: 1	n:3130000
DUSP27   3130000 perm   4858 sec   (644 perm/sec)   p_kst 3.194888e-07   p_cons 9.079300e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.174802e-06	k: 0	n:3140000
Cons ci ratio: 7.044776e-04	ci left: 9.076048e-01	ci right 9.082447e-01	k: 2850885	n:3140000
KS ci ratio: 2.771857e+00	ci left: 8.062996e-09	ci right 1.774407e-06	k: 1	n:3140000
DUSP27   3140000 perm   4886 sec   (643 perm/sec)   p_kst 3.184713e-07   p_cons 9.079252e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.171072e-06	k: 0	n:3150000
Cons ci ratio: 7.033815e-04	ci left: 9.075998e-01	ci right 9.082388e-01	k: 2859947	n:3150000
KS ci ratio: 2.771857e+00	ci left: 8.037399e-09	ci right 1.768774e-06	k: 1	n:3150000
DUSP27   3150000 perm   4914 sec   (641 perm/sec)   p_kst 3.174603e-07   p_cons 9.079197e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.167366e-06	k: 0	n:3160000
Cons ci ratio: 7.022134e-04	ci left: 9.076133e-01	ci right 9.082512e-01	k: 2869067	n:3160000
KS ci ratio: 2.771857e+00	ci left: 8.011965e-09	ci right 1.763177e-06	k: 1	n:3160000
DUSP27   3160000 perm   4941 sec   (640 perm/sec)   p_kst 3.164557e-07   p_cons 9.079326e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.163684e-06	k: 0	n:3170000
Cons ci ratio: 7.011120e-04	ci left: 9.076121e-01	ci right 9.082490e-01	k: 2878141	n:3170000
KS ci ratio: 2.771857e+00	ci left: 7.986690e-09	ci right 1.757615e-06	k: 1	n:3170000
DUSP27   3170000 perm   4969 sec   (638 perm/sec)   p_kst 3.154574e-07   p_cons 9.079309e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.160024e-06	k: 0	n:3180000
Cons ci ratio: 7.000092e-04	ci left: 9.076125e-01	ci right 9.082484e-01	k: 2887220	n:3180000
KS ci ratio: 2.771857e+00	ci left: 7.961575e-09	ci right 1.752088e-06	k: 1	n:3180000
DUSP27   3180000 perm   4997 sec   (636 perm/sec)   p_kst 3.144654e-07   p_cons 9.079308e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.156388e-06	k: 0	n:3190000
Cons ci ratio: 6.990255e-04	ci left: 9.075856e-01	ci right 9.082206e-01	k: 2896212	n:3190000
KS ci ratio: 2.771857e+00	ci left: 7.936617e-09	ci right 1.746595e-06	k: 1	n:3190000
DUSP27   3190000 perm   5025 sec   (635 perm/sec)   p_kst 3.134796e-07   p_cons 9.079034e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.152774e-06	k: 0	n:3200000
Cons ci ratio: 6.978921e-04	ci left: 9.075958e-01	ci right 9.082297e-01	k: 2905322	n:3200000
KS ci ratio: 2.771857e+00	ci left: 7.911815e-09	ci right 1.741137e-06	k: 1	n:3200000
DUSP27   3200000 perm   5053 sec   (633 perm/sec)   p_kst 3.125000e-07   p_cons 9.079131e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.149183e-06	k: 0	n:3210000
Cons ci ratio: 6.968082e-04	ci left: 9.075953e-01	ci right 9.082283e-01	k: 2914398	n:3210000
KS ci ratio: 2.771857e+00	ci left: 7.887168e-09	ci right 1.735713e-06	k: 1	n:3210000
DUSP27   3210000 perm   5081 sec   (632 perm/sec)   p_kst 3.115265e-07   p_cons 9.079121e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.145614e-06	k: 0	n:3220000
Cons ci ratio: 6.957552e-04	ci left: 9.075886e-01	ci right 9.082206e-01	k: 2923454	n:3220000
KS ci ratio: 2.771857e+00	ci left: 7.862673e-09	ci right 1.730323e-06	k: 1	n:3220000
DUSP27   3220000 perm   5112 sec   (630 perm/sec)   p_kst 3.105590e-07   p_cons 9.079050e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.142067e-06	k: 0	n:3230000
Cons ci ratio: 6.946852e-04	ci left: 9.075872e-01	ci right 9.082182e-01	k: 2932527	n:3230000
KS ci ratio: 2.771857e+00	ci left: 7.838331e-09	ci right 1.724966e-06	k: 1	n:3230000
DUSP27   3230000 perm   5142 sec   (628 perm/sec)   p_kst 3.095975e-07   p_cons 9.079031e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.138542e-06	k: 0	n:3240000
Cons ci ratio: 6.935957e-04	ci left: 9.075917e-01	ci right 9.082217e-01	k: 2941619	n:3240000
KS ci ratio: 2.771857e+00	ci left: 7.814138e-09	ci right 1.719642e-06	k: 1	n:3240000
DUSP27   3240000 perm   5170 sec   (627 perm/sec)   p_kst 3.086420e-07   p_cons 9.079071e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.135039e-06	k: 0	n:3250000
Cons ci ratio: 6.925483e-04	ci left: 9.075873e-01	ci right 9.082163e-01	k: 2950682	n:3250000
KS ci ratio: 2.771857e+00	ci left: 7.790095e-09	ci right 1.714351e-06	k: 1	n:3250000
DUSP27   3250000 perm   5199 sec   (625 perm/sec)   p_kst 3.076923e-07   p_cons 9.079022e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.131557e-06	k: 0	n:3260000
Cons ci ratio: 6.914675e-04	ci left: 9.075920e-01	ci right 9.082201e-01	k: 2959775	n:3260000
KS ci ratio: 2.771857e+00	ci left: 7.766199e-09	ci right 1.709092e-06	k: 1	n:3260000
DUSP27   3260000 perm   5235 sec   (623 perm/sec)   p_kst 3.067485e-07   p_cons 9.079064e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.128097e-06	k: 0	n:3270000
Cons ci ratio: 6.903792e-04	ci left: 9.075999e-01	ci right 9.082269e-01	k: 2968878	n:3270000
KS ci ratio: 2.771857e+00	ci left: 7.742449e-09	ci right 1.703865e-06	k: 1	n:3270000
DUSP27   3270000 perm   5264 sec   (621 perm/sec)   p_kst 3.058104e-07   p_cons 9.079138e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.124658e-06	k: 0	n:3280000
Cons ci ratio: 6.893098e-04	ci left: 9.076043e-01	ci right 9.082304e-01	k: 2977970	n:3280000
KS ci ratio: 2.771857e+00	ci left: 7.718844e-09	ci right 1.698671e-06	k: 1	n:3280000
DUSP27   3280000 perm   5292 sec   (620 perm/sec)   p_kst 3.048780e-07   p_cons 9.079177e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.121239e-06	k: 0	n:3290000
Cons ci ratio: 6.882304e-04	ci left: 9.076123e-01	ci right 9.082374e-01	k: 2987074	n:3290000
KS ci ratio: 2.771857e+00	ci left: 7.695382e-09	ci right 1.693507e-06	k: 1	n:3290000
DUSP27   3290000 perm   5320 sec   (618 perm/sec)   p_kst 3.039514e-07   p_cons 9.079252e-01   p_joint 0

Joint ci ratio: 1.481619e+00	ci left: 6.672410e-07	ci right 3.957412e-06	k: 6	n:3300000
Cons ci ratio: 6.871909e-04	ci left: 9.076118e-01	ci right 9.082360e-01	k: 2996150	n:3300000
KS ci ratio: 2.771857e+00	ci left: 7.672063e-09	ci right 1.688376e-06	k: 1	n:3300000
DUSP27   3300000 perm   5350 sec   (617 perm/sec)   p_kst 3.030303e-07   p_cons 9.079242e-01   p_joint 1.818182e-06

Joint ci ratio: 1.481619e+00	ci left: 6.652251e-07	ci right 3.945456e-06	k: 6	n:3310000
Cons ci ratio: 6.861003e-04	ci left: 9.076249e-01	ci right 9.082481e-01	k: 3005271	n:3310000
KS ci ratio: 2.771857e+00	ci left: 7.648885e-09	ci right 1.683275e-06	k: 1	n:3310000
DUSP27   3310000 perm   5379 sec   (615 perm/sec)   p_kst 3.021148e-07   p_cons 9.079369e-01   p_joint 1.812689e-06

Joint ci ratio: 1.481619e+00	ci left: 6.632214e-07	ci right 3.933572e-06	k: 6	n:3320000
Cons ci ratio: 6.850247e-04	ci left: 9.076355e-01	ci right 9.082578e-01	k: 3014384	n:3320000
KS ci ratio: 2.771857e+00	ci left: 7.625846e-09	ci right 1.678205e-06	k: 1	n:3320000
DUSP27   3320000 perm   5410 sec   (614 perm/sec)   p_kst 3.012048e-07   p_cons 9.079470e-01   p_joint 1.807229e-06

Joint ci ratio: 1.481619e+00	ci left: 6.612298e-07	ci right 3.921760e-06	k: 6	n:3330000
Cons ci ratio: 6.840107e-04	ci left: 9.076322e-01	ci right 9.082536e-01	k: 3023451	n:3330000
KS ci ratio: 2.771857e+00	ci left: 7.602945e-09	ci right 1.673165e-06	k: 1	n:3330000
DUSP27   3330000 perm   5440 sec   (612 perm/sec)   p_kst 3.003003e-07   p_cons 9.079432e-01   p_joint 1.801802e-06

Joint ci ratio: 1.481619e+00	ci left: 6.592501e-07	ci right 3.910018e-06	k: 6	n:3340000
Cons ci ratio: 6.830232e-04	ci left: 9.076236e-01	ci right 9.082440e-01	k: 3032500	n:3340000
KS ci ratio: 2.771857e+00	ci left: 7.580182e-09	ci right 1.668156e-06	k: 1	n:3340000
DUSP27   3340000 perm   5470 sec   (611 perm/sec)   p_kst 2.994012e-07   p_cons 9.079341e-01   p_joint 1.796407e-06

Joint ci ratio: 1.481619e+00	ci left: 6.572821e-07	ci right 3.898346e-06	k: 6	n:3350000
Cons ci ratio: 6.820058e-04	ci left: 9.076233e-01	ci right 9.082428e-01	k: 3041577	n:3350000
KS ci ratio: 2.771857e+00	ci left: 7.557555e-09	ci right 1.663176e-06	k: 1	n:3350000
DUSP27   3350000 perm   5500 sec   (609 perm/sec)   p_kst 2.985075e-07   p_cons 9.079334e-01   p_joint 1.791045e-06

Joint ci ratio: 1.481619e+00	ci left: 6.553259e-07	ci right 3.886744e-06	k: 6	n:3360000
Cons ci ratio: 6.809881e-04	ci left: 9.076243e-01	ci right 9.082429e-01	k: 3050658	n:3360000
KS ci ratio: 2.771857e+00	ci left: 7.535062e-09	ci right 1.658226e-06	k: 1	n:3360000
DUSP27   3360000 perm   5535 sec   (607 perm/sec)   p_kst 2.976190e-07   p_cons 9.079339e-01   p_joint 1.785714e-06

Joint ci ratio: 1.481619e+00	ci left: 6.533814e-07	ci right 3.875211e-06	k: 6	n:3370000
Cons ci ratio: 6.799786e-04	ci left: 9.076244e-01	ci right 9.082420e-01	k: 3059736	n:3370000
KS ci ratio: 2.771857e+00	ci left: 7.512703e-09	ci right 1.653306e-06	k: 1	n:3370000
DUSP27   3370000 perm   5565 sec   (606 perm/sec)   p_kst 2.967359e-07   p_cons 9.079335e-01   p_joint 1.780415e-06

Joint ci ratio: 1.481619e+00	ci left: 6.514483e-07	ci right 3.863746e-06	k: 6	n:3380000
Cons ci ratio: 6.789532e-04	ci left: 9.076295e-01	ci right 9.082462e-01	k: 3068831	n:3380000
KS ci ratio: 2.771857e+00	ci left: 7.490476e-09	ci right 1.648414e-06	k: 1	n:3380000
DUSP27   3380000 perm   5598 sec   (604 perm/sec)   p_kst 2.958580e-07   p_cons 9.079382e-01   p_joint 1.775148e-06

Joint ci ratio: 1.481619e+00	ci left: 6.495266e-07	ci right 3.852348e-06	k: 6	n:3390000
Cons ci ratio: 6.778905e-04	ci left: 9.076449e-01	ci right 9.082606e-01	k: 3077961	n:3390000
KS ci ratio: 2.771857e+00	ci left: 7.468380e-09	ci right 1.643552e-06	k: 1	n:3390000
DUSP27   3390000 perm   5630 sec   (602 perm/sec)   p_kst 2.949853e-07   p_cons 9.079531e-01   p_joint 1.769912e-06

Joint ci ratio: 1.481619e+00	ci left: 6.476162e-07	ci right 3.841018e-06	k: 6	n:3400000
Cons ci ratio: 6.769304e-04	ci left: 9.076360e-01	ci right 9.082509e-01	k: 3087009	n:3400000
KS ci ratio: 2.771857e+00	ci left: 7.446414e-09	ci right 1.638718e-06	k: 1	n:3400000
DUSP27   3400000 perm   5660 sec   (601 perm/sec)   p_kst 2.941176e-07   p_cons 9.079438e-01   p_joint 1.764706e-06

Joint ci ratio: 1.481619e+00	ci left: 6.457171e-07	ci right 3.829754e-06	k: 6	n:3410000
Cons ci ratio: 6.759756e-04	ci left: 9.076270e-01	ci right 9.082410e-01	k: 3096056	n:3410000
KS ci ratio: 2.771857e+00	ci left: 7.424577e-09	ci right 1.633912e-06	k: 1	n:3410000
DUSP27   3410000 perm   5692 sec   (599 perm/sec)   p_kst 2.932551e-07   p_cons 9.079343e-01   p_joint 1.759531e-06

Joint ci ratio: 1.481619e+00	ci left: 6.438290e-07	ci right 3.818556e-06	k: 6	n:3420000
Cons ci ratio: 6.750271e-04	ci left: 9.076173e-01	ci right 9.082305e-01	k: 3105101	n:3420000
KS ci ratio: 2.771857e+00	ci left: 7.402868e-09	ci right 1.629134e-06	k: 1	n:3420000
DUSP27   3420000 perm   5725 sec   (597 perm/sec)   p_kst 2.923977e-07   p_cons 9.079243e-01   p_joint 1.754386e-06

Joint ci ratio: 1.481619e+00	ci left: 6.419519e-07	ci right 3.807423e-06	k: 6	n:3430000
Cons ci ratio: 6.740685e-04	ci left: 9.076113e-01	ci right 9.082236e-01	k: 3114158	n:3430000
KS ci ratio: 2.771857e+00	ci left: 7.381285e-09	ci right 1.624385e-06	k: 1	n:3430000
DUSP27   3430000 perm   5755 sec   (596 perm/sec)   p_kst 2.915452e-07   p_cons 9.079178e-01   p_joint 1.749271e-06

Joint ci ratio: 1.481619e+00	ci left: 6.400858e-07	ci right 3.796355e-06	k: 6	n:3440000
Cons ci ratio: 6.731070e-04	ci left: 9.076070e-01	ci right 9.082184e-01	k: 3123221	n:3440000
KS ci ratio: 2.771857e+00	ci left: 7.359828e-09	ci right 1.619663e-06	k: 1	n:3440000
DUSP27   3440000 perm   5787 sec   (594 perm/sec)   p_kst 2.906977e-07   p_cons 9.079131e-01   p_joint 1.744186e-06

Joint ci ratio: 1.481619e+00	ci left: 6.382305e-07	ci right 3.785351e-06	k: 6	n:3450000
Cons ci ratio: 6.721076e-04	ci left: 9.076132e-01	ci right 9.082237e-01	k: 3132320	n:3450000
KS ci ratio: 2.771857e+00	ci left: 7.338495e-09	ci right 1.614968e-06	k: 1	n:3450000
DUSP27   3450000 perm   5820 sec   (593 perm/sec)   p_kst 2.898551e-07   p_cons 9.079188e-01   p_joint 1.739130e-06

Joint ci ratio: 1.481619e+00	ci left: 6.363859e-07	ci right 3.774411e-06	k: 6	n:3460000
Cons ci ratio: 6.711324e-04	ci left: 9.076145e-01	ci right 9.082241e-01	k: 3141402	n:3460000
KS ci ratio: 2.771857e+00	ci left: 7.317286e-09	ci right 1.610300e-06	k: 1	n:3460000
DUSP27   3460000 perm   5853 sec   (591 perm/sec)   p_kst 2.890173e-07   p_cons 9.079197e-01   p_joint 1.734104e-06

Joint ci ratio: 1.481619e+00	ci left: 6.345519e-07	ci right 3.763533e-06	k: 6	n:3470000
Cons ci ratio: 6.701499e-04	ci left: 9.076186e-01	ci right 9.082274e-01	k: 3150494	n:3470000
KS ci ratio: 2.771857e+00	ci left: 7.296198e-09	ci right 1.605660e-06	k: 1	n:3470000
DUSP27   3470000 perm   5884 sec   (590 perm/sec)   p_kst 2.881844e-07   p_cons 9.079233e-01   p_joint 1.729107e-06

Joint ci ratio: 1.481619e+00	ci left: 6.327285e-07	ci right 3.752719e-06	k: 6	n:3480000
Cons ci ratio: 6.692050e-04	ci left: 9.076144e-01	ci right 9.082223e-01	k: 3159557	n:3480000
KS ci ratio: 2.771857e+00	ci left: 7.275232e-09	ci right 1.601046e-06	k: 1	n:3480000
DUSP27   3480000 perm   5915 sec   (588 perm/sec)   p_kst 2.873563e-07   p_cons 9.079187e-01   p_joint 1.724138e-06

Joint ci ratio: 1.481619e+00	ci left: 6.309155e-07	ci right 3.741966e-06	k: 6	n:3490000
Cons ci ratio: 6.682778e-04	ci left: 9.076068e-01	ci right 9.082138e-01	k: 3168608	n:3490000
KS ci ratio: 2.771857e+00	ci left: 7.254386e-09	ci right 1.596458e-06	k: 1	n:3490000
DUSP27   3490000 perm   5947 sec   (587 perm/sec)   p_kst 2.865330e-07   p_cons 9.079106e-01   p_joint 1.719198e-06

Joint ci ratio: 1.481619e+00	ci left: 6.291129e-07	ci right 3.731275e-06	k: 6	n:3500000
Cons ci ratio: 6.672849e-04	ci left: 9.076166e-01	ci right 9.082227e-01	k: 3177720	n:3500000
KS ci ratio: 2.771857e+00	ci left: 7.233659e-09	ci right 1.591897e-06	k: 1	n:3500000
DUSP27   3500000 perm   5980 sec   (585 perm/sec)   p_kst 2.857143e-07   p_cons 9.079200e-01   p_joint 1.714286e-06

Joint ci ratio: 1.481619e+00	ci left: 6.273206e-07	ci right 3.720644e-06	k: 6	n:3510000
Cons ci ratio: 6.663748e-04	ci left: 9.076067e-01	ci right 9.082120e-01	k: 3186763	n:3510000
KS ci ratio: 2.771857e+00	ci left: 7.213051e-09	ci right 1.587362e-06	k: 1	n:3510000
DUSP27   3510000 perm   6012 sec   (584 perm/sec)   p_kst 2.849003e-07   p_cons 9.079097e-01   p_joint 1.709402e-06

Joint ci ratio: 1.481619e+00	ci left: 6.255384e-07	ci right 3.710074e-06	k: 6	n:3520000
Cons ci ratio: 6.654266e-04	ci left: 9.076074e-01	ci right 9.082118e-01	k: 3195843	n:3520000
KS ci ratio: 2.771857e+00	ci left: 7.192559e-09	ci right 1.582852e-06	k: 1	n:3520000
DUSP27   3520000 perm   6042 sec   (583 perm/sec)   p_kst 2.840909e-07   p_cons 9.079099e-01   p_joint 1.704545e-06

Joint ci ratio: 1.481619e+00	ci left: 6.237663e-07	ci right 3.699564e-06	k: 6	n:3530000
Cons ci ratio: 6.644576e-04	ci left: 9.076143e-01	ci right 9.082179e-01	k: 3204945	n:3530000
KS ci ratio: 2.771857e+00	ci left: 7.172184e-09	ci right 1.578368e-06	k: 1	n:3530000
DUSP27   3530000 perm   6074 sec   (581 perm/sec)   p_kst 2.832861e-07   p_cons 9.079164e-01   p_joint 1.699717e-06

Joint ci ratio: 1.481619e+00	ci left: 6.220043e-07	ci right 3.689113e-06	k: 6	n:3540000
Cons ci ratio: 6.634693e-04	ci left: 9.076272e-01	ci right 9.082298e-01	k: 3214068	n:3540000
KS ci ratio: 2.771857e+00	ci left: 7.151923e-09	ci right 1.573910e-06	k: 1	n:3540000
DUSP27   3540000 perm   6105 sec   (580 perm/sec)   p_kst 2.824859e-07   p_cons 9.079288e-01   p_joint 1.694915e-06

Joint ci ratio: 1.481619e+00	ci left: 6.202521e-07	ci right 3.678721e-06	k: 6	n:3550000
Cons ci ratio: 6.625244e-04	ci left: 9.076300e-01	ci right 9.082318e-01	k: 3223156	n:3550000
KS ci ratio: 2.771857e+00	ci left: 7.131777e-09	ci right 1.569476e-06	k: 1	n:3550000
DUSP27   3550000 perm   6137 sec   (578 perm/sec)   p_kst 2.816901e-07   p_cons 9.079313e-01   p_joint 1.690141e-06

Joint ci ratio: 1.481619e+00	ci left: 6.185099e-07	ci right 3.668388e-06	k: 6	n:3560000
Cons ci ratio: 6.615769e-04	ci left: 9.076346e-01	ci right 9.082355e-01	k: 3232250	n:3560000
KS ci ratio: 2.771857e+00	ci left: 7.111744e-09	ci right 1.565067e-06	k: 1	n:3560000
DUSP27   3560000 perm   6168 sec   (577 perm/sec)   p_kst 2.808989e-07   p_cons 9.079354e-01   p_joint 1.685393e-06

Joint ci ratio: 1.481619e+00	ci left: 6.167773e-07	ci right 3.658112e-06	k: 6	n:3570000
Cons ci ratio: 6.606722e-04	ci left: 9.076293e-01	ci right 9.082294e-01	k: 3241309	n:3570000
KS ci ratio: 2.771857e+00	ci left: 7.091823e-09	ci right 1.560683e-06	k: 1	n:3570000
DUSP27   3570000 perm   6200 sec   (576 perm/sec)   p_kst 2.801120e-07   p_cons 9.079297e-01   p_joint 1.680672e-06

Joint ci ratio: 1.481619e+00	ci left: 6.150545e-07	ci right 3.647894e-06	k: 6	n:3580000
Cons ci ratio: 6.597613e-04	ci left: 9.076266e-01	ci right 9.082258e-01	k: 3250377	n:3580000
KS ci ratio: 2.771857e+00	ci left: 7.072013e-09	ci right 1.556324e-06	k: 1	n:3580000
DUSP27   3580000 perm   6232 sec   (574 perm/sec)   p_kst 2.793296e-07   p_cons 9.079265e-01   p_joint 1.675978e-06

Joint ci ratio: 1.481619e+00	ci left: 6.133413e-07	ci right 3.637733e-06	k: 6	n:3590000
Cons ci ratio: 6.588893e-04	ci left: 9.076149e-01	ci right 9.082134e-01	k: 3259413	n:3590000
KS ci ratio: 2.771857e+00	ci left: 7.052314e-09	ci right 1.551989e-06	k: 1	n:3590000
DUSP27   3590000 perm   6264 sec   (573 perm/sec)   p_kst 2.785515e-07   p_cons 9.079145e-01   p_joint 1.671309e-06

Joint ci ratio: 1.481619e+00	ci left: 6.116375e-07	ci right 3.627628e-06	k: 6	n:3600000
Cons ci ratio: 6.579146e-04	ci left: 9.076303e-01	ci right 9.082279e-01	k: 3268546	n:3600000
KS ci ratio: 2.771857e+00	ci left: 7.032724e-09	ci right 1.547678e-06	k: 1	n:3600000
DUSP27   3600000 perm   6296 sec   (572 perm/sec)   p_kst 2.777778e-07   p_cons 9.079294e-01   p_joint 1.666667e-06

Joint ci ratio: 1.481619e+00	ci left: 6.099432e-07	ci right 3.617579e-06	k: 6	n:3610000
Cons ci ratio: 6.569683e-04	ci left: 9.076395e-01	ci right 9.082363e-01	k: 3277657	n:3610000
KS ci ratio: 2.771857e+00	ci left: 7.013243e-09	ci right 1.543391e-06	k: 1	n:3610000
DUSP27   3610000 perm   6327 sec   (571 perm/sec)   p_kst 2.770083e-07   p_cons 9.079382e-01   p_joint 1.662050e-06

Joint ci ratio: 1.481619e+00	ci left: 6.082583e-07	ci right 3.607586e-06	k: 6	n:3620000
Cons ci ratio: 6.560780e-04	ci left: 9.076354e-01	ci right 9.082313e-01	k: 3286720	n:3620000
KS ci ratio: 2.771857e+00	ci left: 6.993870e-09	ci right 1.539127e-06	k: 1	n:3620000
DUSP27   3620000 perm   6358 sec   (569 perm/sec)   p_kst 2.762431e-07   p_cons 9.079337e-01   p_joint 1.657459e-06

Joint ci ratio: 1.481619e+00	ci left: 6.065827e-07	ci right 3.597648e-06	k: 6	n:3630000
Cons ci ratio: 6.552032e-04	ci left: 9.076283e-01	ci right 9.082234e-01	k: 3295772	n:3630000
KS ci ratio: 2.771857e+00	ci left: 6.974603e-09	ci right 1.534887e-06	k: 1	n:3630000
DUSP27   3630000 perm   6389 sec   (568 perm/sec)   p_kst 2.754821e-07   p_cons 9.079262e-01   p_joint 1.652893e-06

Joint ci ratio: 1.481619e+00	ci left: 6.049162e-07	ci right 3.587764e-06	k: 6	n:3640000
Cons ci ratio: 6.543157e-04	ci left: 9.076253e-01	ci right 9.082196e-01	k: 3304839	n:3640000
KS ci ratio: 2.771857e+00	ci left: 6.955442e-09	ci right 1.530670e-06	k: 1	n:3640000
DUSP27   3640000 perm   6421 sec   (567 perm/sec)   p_kst 2.747253e-07   p_cons 9.079228e-01   p_joint 1.648352e-06

Joint ci ratio: 1.481619e+00	ci left: 6.032589e-07	ci right 3.577935e-06	k: 6	n:3650000
Cons ci ratio: 6.533923e-04	ci left: 9.076325e-01	ci right 9.082260e-01	k: 3313943	n:3650000
KS ci ratio: 2.771857e+00	ci left: 6.936386e-09	ci right 1.526477e-06	k: 1	n:3650000
DUSP27   3650000 perm   6453 sec   (566 perm/sec)   p_kst 2.739726e-07   p_cons 9.079296e-01   p_joint 1.643836e-06

Joint ci ratio: 1.481619e+00	ci left: 6.016107e-07	ci right 3.568159e-06	k: 6	n:3660000
Cons ci ratio: 6.524631e-04	ci left: 9.076421e-01	ci right 9.082348e-01	k: 3323056	n:3660000
KS ci ratio: 2.771857e+00	ci left: 6.917434e-09	ci right 1.522306e-06	k: 1	n:3660000
DUSP27   3660000 perm   6483 sec   (565 perm/sec)   p_kst 2.732240e-07   p_cons 9.079388e-01   p_joint 1.639344e-06

Joint ci ratio: 1.481619e+00	ci left: 5.999714e-07	ci right 3.558436e-06	k: 6	n:3670000
Cons ci ratio: 6.515666e-04	ci left: 9.076444e-01	ci right 9.082362e-01	k: 3332142	n:3670000
KS ci ratio: 2.771857e+00	ci left: 6.898585e-09	ci right 1.518158e-06	k: 1	n:3670000
DUSP27   3670000 perm   6516 sec   (563 perm/sec)   p_kst 2.724796e-07   p_cons 9.079406e-01   p_joint 1.634877e-06

Joint ci ratio: 1.481619e+00	ci left: 5.983411e-07	ci right 3.548767e-06	k: 6	n:3680000
Cons ci ratio: 6.506494e-04	ci left: 9.076528e-01	ci right 9.082438e-01	k: 3341251	n:3680000
KS ci ratio: 2.771857e+00	ci left: 6.879839e-09	ci right 1.514033e-06	k: 1	n:3680000
DUSP27   3680000 perm   6547 sec   (562 perm/sec)   p_kst 2.717391e-07   p_cons 9.079486e-01   p_joint 1.630435e-06

Joint ci ratio: 1.481619e+00	ci left: 5.967195e-07	ci right 3.539149e-06	k: 6	n:3690000
Cons ci ratio: 6.497687e-04	ci left: 9.076528e-01	ci right 9.082430e-01	k: 3350329	n:3690000
KS ci ratio: 2.771857e+00	ci left: 6.861195e-09	ci right 1.509930e-06	k: 1	n:3690000
DUSP27   3690000 perm   6579 sec   (561 perm/sec)   p_kst 2.710027e-07   p_cons 9.079482e-01   p_joint 1.626016e-06

Joint ci ratio: 1.481619e+00	ci left: 5.951068e-07	ci right 3.529584e-06	k: 6	n:3700000
Cons ci ratio: 6.488968e-04	ci left: 9.076515e-01	ci right 9.082409e-01	k: 3359402	n:3700000
KS ci ratio: 2.771857e+00	ci left: 6.842651e-09	ci right 1.505849e-06	k: 1	n:3700000
DUSP27   3700000 perm   6611 sec   (560 perm/sec)   p_kst 2.702703e-07   p_cons 9.079465e-01   p_joint 1.621622e-06

Joint ci ratio: 1.481619e+00	ci left: 5.935027e-07	ci right 3.520071e-06	k: 6	n:3710000
Cons ci ratio: 6.480222e-04	ci left: 9.076517e-01	ci right 9.082404e-01	k: 3368481	n:3710000
KS ci ratio: 2.771857e+00	ci left: 6.824207e-09	ci right 1.501790e-06	k: 1	n:3710000
DUSP27   3710000 perm   6642 sec   (559 perm/sec)   p_kst 2.695418e-07   p_cons 9.079464e-01   p_joint 1.617251e-06

Joint ci ratio: 1.481619e+00	ci left: 5.919073e-07	ci right 3.510608e-06	k: 6	n:3720000
Cons ci ratio: 6.471261e-04	ci left: 9.076585e-01	ci right 9.082463e-01	k: 3377584	n:3720000
KS ci ratio: 2.771857e+00	ci left: 6.805862e-09	ci right 1.497753e-06	k: 1	n:3720000
DUSP27   3720000 perm   6677 sec   (557 perm/sec)   p_kst 2.688172e-07   p_cons 9.079527e-01   p_joint 1.612903e-06

Joint ci ratio: 1.481619e+00	ci left: 5.903204e-07	ci right 3.501196e-06	k: 6	n:3730000
Cons ci ratio: 6.463032e-04	ci left: 9.076472e-01	ci right 9.082342e-01	k: 3386620	n:3730000
KS ci ratio: 2.771857e+00	ci left: 6.787616e-09	ci right 1.493737e-06	k: 1	n:3730000
DUSP27   3730000 perm   6709 sec   (556 perm/sec)   p_kst 2.680965e-07   p_cons 9.079410e-01   p_joint 1.608579e-06

Joint ci ratio: 1.481619e+00	ci left: 5.887420e-07	ci right 3.491835e-06	k: 6	n:3740000
Cons ci ratio: 6.454215e-04	ci left: 9.076520e-01	ci right 9.082383e-01	k: 3395716	n:3740000
KS ci ratio: 2.771857e+00	ci left: 6.769467e-09	ci right 1.489743e-06	k: 1	n:3740000
DUSP27   3740000 perm   6741 sec   (555 perm/sec)   p_kst 2.673797e-07   p_cons 9.079455e-01   p_joint 1.604278e-06

Joint ci ratio: 1.481619e+00	ci left: 5.871720e-07	ci right 3.482523e-06	k: 6	n:3750000
Cons ci ratio: 6.446163e-04	ci left: 9.076379e-01	ci right 9.082234e-01	k: 3404741	n:3750000
KS ci ratio: 2.771857e+00	ci left: 6.751415e-09	ci right 1.485771e-06	k: 1	n:3750000
DUSP27   3750000 perm   6773 sec   (554 perm/sec)   p_kst 2.666667e-07   p_cons 9.079309e-01   p_joint 1.600000e-06

Joint ci ratio: 1.481619e+00	ci left: 5.856104e-07	ci right 3.473261e-06	k: 6	n:3760000
Cons ci ratio: 6.437394e-04	ci left: 9.076432e-01	ci right 9.082280e-01	k: 3413839	n:3760000
KS ci ratio: 2.771857e+00	ci left: 6.733460e-09	ci right 1.481819e-06	k: 1	n:3760000
DUSP27   3760000 perm   6805 sec   (553 perm/sec)   p_kst 2.659574e-07   p_cons 9.079359e-01   p_joint 1.595745e-06

Joint ci ratio: 1.481619e+00	ci left: 5.840570e-07	ci right 3.464048e-06	k: 6	n:3770000
Cons ci ratio: 6.429007e-04	ci left: 9.076395e-01	ci right 9.082235e-01	k: 3422903	n:3770000
KS ci ratio: 2.771857e+00	ci left: 6.715599e-09	ci right 1.477889e-06	k: 1	n:3770000
DUSP27   3770000 perm   6837 sec   (551 perm/sec)   p_kst 2.652520e-07   p_cons 9.079318e-01   p_joint 1.591512e-06

Joint ci ratio: 1.481619e+00	ci left: 5.825119e-07	ci right 3.454884e-06	k: 6	n:3780000
Cons ci ratio: 6.420917e-04	ci left: 9.076290e-01	ci right 9.082122e-01	k: 3431941	n:3780000
KS ci ratio: 2.771857e+00	ci left: 6.697833e-09	ci right 1.473979e-06	k: 1	n:3780000
DUSP27   3780000 perm   6870 sec   (550 perm/sec)   p_kst 2.645503e-07   p_cons 9.079209e-01   p_joint 1.587302e-06

Joint ci ratio: 1.481619e+00	ci left: 5.809750e-07	ci right 3.445768e-06	k: 6	n:3790000
Cons ci ratio: 6.412676e-04	ci left: 9.076232e-01	ci right 9.082057e-01	k: 3440997	n:3790000
KS ci ratio: 2.771857e+00	ci left: 6.680160e-09	ci right 1.470090e-06	k: 1	n:3790000
DUSP27   3790000 perm   6902 sec   (549 perm/sec)   p_kst 2.638522e-07   p_cons 9.079148e-01   p_joint 1.583113e-06

Joint ci ratio: 1.481619e+00	ci left: 5.794461e-07	ci right 3.436700e-06	k: 6	n:3800000
Cons ci ratio: 6.404577e-04	ci left: 9.076146e-01	ci right 9.081963e-01	k: 3450042	n:3800000
KS ci ratio: 2.771857e+00	ci left: 6.662581e-09	ci right 1.466221e-06	k: 1	n:3800000
DUSP27   3800000 perm   6934 sec   (548 perm/sec)   p_kst 2.631579e-07   p_cons 9.079058e-01   p_joint 1.578947e-06

Joint ci ratio: 1.481619e+00	ci left: 5.779252e-07	ci right 3.427680e-06	k: 6	n:3810000
Cons ci ratio: 6.396127e-04	ci left: 9.076160e-01	ci right 9.081970e-01	k: 3459125	n:3810000
KS ci ratio: 2.771857e+00	ci left: 6.645094e-09	ci right 1.462373e-06	k: 1	n:3810000
DUSP27   3810000 perm   6966 sec   (547 perm/sec)   p_kst 2.624672e-07   p_cons 9.079068e-01   p_joint 1.574803e-06

Joint ci ratio: 1.385928e+00	ci left: 7.367446e-07	ci right 3.775566e-06	k: 7	n:3820000
Cons ci ratio: 6.387720e-04	ci left: 9.076172e-01	ci right 9.081974e-01	k: 3468207	n:3820000
KS ci ratio: 2.771857e+00	ci left: 6.627698e-09	ci right 1.458545e-06	k: 1	n:3820000
DUSP27   3820000 perm   6999 sec   (546 perm/sec)   p_kst 2.617801e-07   p_cons 9.079076e-01   p_joint 1.832461e-06

Joint ci ratio: 1.385928e+00	ci left: 7.348209e-07	ci right 3.765708e-06	k: 7	n:3830000
Cons ci ratio: 6.379008e-04	ci left: 9.076272e-01	ci right 9.082066e-01	k: 3477323	n:3830000
KS ci ratio: 2.771857e+00	ci left: 6.610394e-09	ci right 1.454736e-06	k: 1	n:3830000
DUSP27   3830000 perm   7031 sec   (545 perm/sec)   p_kst 2.610966e-07   p_cons 9.079172e-01   p_joint 1.827676e-06

Joint ci ratio: 1.385928e+00	ci left: 7.329073e-07	ci right 3.755901e-06	k: 7	n:3840000
Cons ci ratio: 6.370539e-04	ci left: 9.076317e-01	ci right 9.082104e-01	k: 3486418	n:3840000
KS ci ratio: 2.771857e+00	ci left: 6.593179e-09	ci right 1.450948e-06	k: 1	n:3840000
DUSP27   3840000 perm   7064 sec   (544 perm/sec)   p_kst 2.604167e-07   p_cons 9.079214e-01   p_joint 1.822917e-06

Joint ci ratio: 1.385928e+00	ci left: 7.310037e-07	ci right 3.746146e-06	k: 7	n:3850000
Cons ci ratio: 6.362618e-04	ci left: 9.076227e-01	ci right 9.082006e-01	k: 3495461	n:3850000
KS ci ratio: 2.771858e+00	ci left: 6.576054e-09	ci right 1.447179e-06	k: 1	n:3850000
DUSP27   3850000 perm   7096 sec   (543 perm/sec)   p_kst 2.597403e-07   p_cons 9.079119e-01   p_joint 1.818182e-06

Joint ci ratio: 1.385928e+00	ci left: 7.291099e-07	ci right 3.736441e-06	k: 7	n:3860000
Cons ci ratio: 6.354303e-04	ci left: 9.076248e-01	ci right 9.082020e-01	k: 3504547	n:3860000
KS ci ratio: 2.771858e+00	ci left: 6.559018e-09	ci right 1.443430e-06	k: 1	n:3860000
DUSP27   3860000 perm   7129 sec   (541 perm/sec)   p_kst 2.590674e-07   p_cons 9.079137e-01   p_joint 1.813472e-06

Joint ci ratio: 1.385928e+00	ci left: 7.272259e-07	ci right 3.726786e-06	k: 7	n:3870000
Cons ci ratio: 6.346188e-04	ci left: 9.076226e-01	ci right 9.081990e-01	k: 3513616	n:3870000
KS ci ratio: 2.771858e+00	ci left: 6.542069e-09	ci right 1.439700e-06	k: 1	n:3870000
DUSP27   3870000 perm   7162 sec   (540 perm/sec)   p_kst 2.583979e-07   p_cons 9.079111e-01   p_joint 1.808786e-06

Joint ci ratio: 1.385928e+00	ci left: 7.253516e-07	ci right 3.717181e-06	k: 7	n:3880000
Cons ci ratio: 6.338552e-04	ci left: 9.076085e-01	ci right 9.081842e-01	k: 3522639	n:3880000
KS ci ratio: 2.771858e+00	ci left: 6.525208e-09	ci right 1.435990e-06	k: 1	n:3880000
DUSP27   3880000 perm   7195 sec   (539 perm/sec)   p_kst 2.577320e-07   p_cons 9.078966e-01   p_joint 1.804124e-06

Joint ci ratio: 1.385928e+00	ci left: 7.234869e-07	ci right 3.707625e-06	k: 7	n:3890000
Cons ci ratio: 6.330604e-04	ci left: 9.076035e-01	ci right 9.081785e-01	k: 3531697	n:3890000
KS ci ratio: 2.771858e+00	ci left: 6.508434e-09	ci right 1.432298e-06	k: 1	n:3890000
DUSP27   3890000 perm   7228 sec   (538 perm/sec)   p_kst 2.570694e-07   p_cons 9.078913e-01   p_joint 1.799486e-06

Joint ci ratio: 1.385928e+00	ci left: 7.216318e-07	ci right 3.698118e-06	k: 7	n:3900000
Cons ci ratio: 6.322075e-04	ci left: 9.076146e-01	ci right 9.081889e-01	k: 3540818	n:3900000
KS ci ratio: 2.771858e+00	ci left: 6.491746e-09	ci right 1.428626e-06	k: 1	n:3900000
DUSP27   3900000 perm   7261 sec   (537 perm/sec)   p_kst 2.564103e-07   p_cons 9.079021e-01   p_joint 1.794872e-06

Joint ci ratio: 1.385928e+00	ci left: 7.197862e-07	ci right 3.688660e-06	k: 7	n:3910000
Cons ci ratio: 6.314342e-04	ci left: 9.076055e-01	ci right 9.081790e-01	k: 3549860	n:3910000
KS ci ratio: 2.771858e+00	ci left: 6.475143e-09	ci right 1.424972e-06	k: 1	n:3910000
DUSP27   3910000 perm   7294 sec   (536 perm/sec)   p_kst 2.557545e-07   p_cons 9.078926e-01   p_joint 1.790281e-06

Joint ci ratio: 1.385928e+00	ci left: 7.179501e-07	ci right 3.679250e-06	k: 7	n:3920000
Cons ci ratio: 6.306100e-04	ci left: 9.076108e-01	ci right 9.081835e-01	k: 3558958	n:3920000
KS ci ratio: 2.771858e+00	ci left: 6.458624e-09	ci right 1.421337e-06	k: 1	n:3920000
DUSP27   3920000 perm   7327 sec   (535 perm/sec)   p_kst 2.551020e-07   p_cons 9.078974e-01   p_joint 1.785714e-06

Joint ci ratio: 1.385928e+00	ci left: 7.161232e-07	ci right 3.669888e-06	k: 7	n:3930000
Cons ci ratio: 6.297918e-04	ci left: 9.076152e-01	ci right 9.081872e-01	k: 3568053	n:3930000
KS ci ratio: 2.771858e+00	ci left: 6.442190e-09	ci right 1.417720e-06	k: 1	n:3930000
DUSP27   3930000 perm   7360 sec   (534 perm/sec)   p_kst 2.544529e-07   p_cons 9.079015e-01   p_joint 1.781170e-06

Joint ci ratio: 1.385928e+00	ci left: 7.143056e-07	ci right 3.660574e-06	k: 7	n:3940000
Cons ci ratio: 6.290064e-04	ci left: 9.076118e-01	ci right 9.081831e-01	k: 3577117	n:3940000
KS ci ratio: 2.771858e+00	ci left: 6.425839e-09	ci right 1.414122e-06	k: 1	n:3940000
DUSP27   3940000 perm   7393 sec   (533 perm/sec)   p_kst 2.538071e-07   p_cons 9.078977e-01   p_joint 1.776650e-06

Joint ci ratio: 1.385928e+00	ci left: 7.124973e-07	ci right 3.651307e-06	k: 7	n:3950000
Cons ci ratio: 6.282287e-04	ci left: 9.076071e-01	ci right 9.081777e-01	k: 3586176	n:3950000
KS ci ratio: 2.771858e+00	ci left: 6.409572e-09	ci right 1.410542e-06	k: 1	n:3950000
DUSP27   3950000 perm   7427 sec   (532 perm/sec)   p_kst 2.531646e-07   p_cons 9.078927e-01   p_joint 1.772152e-06

Joint ci ratio: 1.306665e+00	ci left: 8.721802e-07	ci right 3.980599e-06	k: 8	n:3960000
Cons ci ratio: 6.273790e-04	ci left: 9.076224e-01	ci right 9.081922e-01	k: 3595314	n:3960000
KS ci ratio: 2.771858e+00	ci left: 6.393386e-09	ci right 1.406980e-06	k: 1	n:3960000
DUSP27   3960000 perm   7460 sec   (531 perm/sec)   p_kst 2.525253e-07   p_cons 9.079076e-01   p_joint 2.020202e-06

Joint ci ratio: 1.306665e+00	ci left: 8.699833e-07	ci right 3.970573e-06	k: 8	n:3970000
Cons ci ratio: 6.265733e-04	ci left: 9.076267e-01	ci right 9.081958e-01	k: 3604409	n:3970000
KS ci ratio: 2.771858e+00	ci left: 6.377281e-09	ci right 1.403436e-06	k: 1	n:3970000
DUSP27   3970000 perm   7494 sec   (530 perm/sec)   p_kst 2.518892e-07   p_cons 9.079116e-01   p_joint 2.015113e-06

Joint ci ratio: 1.306665e+00	ci left: 8.677974e-07	ci right 3.960596e-06	k: 8	n:3980000
Cons ci ratio: 6.257717e-04	ci left: 9.076308e-01	ci right 9.081992e-01	k: 3613503	n:3980000
KS ci ratio: 2.771858e+00	ci left: 6.361258e-09	ci right 1.399910e-06	k: 1	n:3980000
DUSP27   3980000 perm   7527 sec   (529 perm/sec)   p_kst 2.512563e-07   p_cons 9.079153e-01   p_joint 2.010050e-06

Joint ci ratio: 1.306665e+00	ci left: 8.656225e-07	ci right 3.950670e-06	k: 8	n:3990000
Cons ci ratio: 6.249862e-04	ci left: 9.076314e-01	ci right 9.081991e-01	k: 3622583	n:3990000
KS ci ratio: 2.771858e+00	ci left: 6.345315e-09	ci right 1.396401e-06	k: 1	n:3990000
DUSP27   3990000 perm   7561 sec   (528 perm/sec)   p_kst 2.506266e-07   p_cons 9.079155e-01   p_joint 2.005013e-06

Joint ci ratio: 1.306665e+00	ci left: 8.634584e-07	ci right 3.940793e-06	k: 8	n:4000000
Cons ci ratio: 6.241542e-04	ci left: 9.076452e-01	ci right 9.082122e-01	k: 3631716	n:4000000
KS ci ratio: 2.771858e+00	ci left: 6.329452e-09	ci right 1.392910e-06	k: 1	n:4000000
DUSP27   4000000 perm   7594 sec   (527 perm/sec)   p_kst 2.500000e-07   p_cons 9.079290e-01   p_joint 2.000000e-06

Joint ci ratio: 1.306665e+00	ci left: 8.613052e-07	ci right 3.930966e-06	k: 8	n:4010000
Cons ci ratio: 6.233795e-04	ci left: 9.076445e-01	ci right 9.082107e-01	k: 3640791	n:4010000
KS ci ratio: 2.771858e+00	ci left: 6.313668e-09	ci right 1.389436e-06	k: 1	n:4010000
DUSP27   4010000 perm   7628 sec   (526 perm/sec)   p_kst 2.493766e-07   p_cons 9.079279e-01   p_joint 1.995012e-06

Joint ci ratio: 1.306665e+00	ci left: 8.591626e-07	ci right 3.921188e-06	k: 8	n:4020000
Cons ci ratio: 6.225734e-04	ci left: 9.076530e-01	ci right 9.082185e-01	k: 3649903	n:4020000
KS ci ratio: 2.771858e+00	ci left: 6.297962e-09	ci right 1.385980e-06	k: 1	n:4020000
DUSP27   4020000 perm   7662 sec   (525 perm/sec)   p_kst 2.487562e-07   p_cons 9.079361e-01   p_joint 1.990050e-06

Joint ci ratio: 1.306665e+00	ci left: 8.570307e-07	ci right 3.911458e-06	k: 8	n:4030000
Cons ci ratio: 6.217925e-04	ci left: 9.076555e-01	ci right 9.082203e-01	k: 3658991	n:4030000
KS ci ratio: 2.771858e+00	ci left: 6.282334e-09	ci right 1.382541e-06	k: 1	n:4030000
DUSP27   4030000 perm   7697 sec   (524 perm/sec)   p_kst 2.481390e-07   p_cons 9.079382e-01   p_joint 1.985112e-06

Joint ci ratio: 1.306665e+00	ci left: 8.549093e-07	ci right 3.901776e-06	k: 8	n:4040000
Cons ci ratio: 6.210256e-04	ci left: 9.076550e-01	ci right 9.082191e-01	k: 3668067	n:4040000
KS ci ratio: 2.771858e+00	ci left: 6.266784e-09	ci right 1.379119e-06	k: 1	n:4040000
DUSP27   4040000 perm   7731 sec   (523 perm/sec)   p_kst 2.475248e-07   p_cons 9.079374e-01   p_joint 1.980198e-06

Joint ci ratio: 1.239611e+00	ci left: 1.016142e-06	ci right 4.218466e-06	k: 9	n:4050000
Cons ci ratio: 6.202312e-04	ci left: 9.076627e-01	ci right 9.082261e-01	k: 3677176	n:4050000
KS ci ratio: 2.771858e+00	ci left: 6.251311e-09	ci right 1.375714e-06	k: 1	n:4050000
DUSP27   4050000 perm   7765 sec   (522 perm/sec)   p_kst 2.469136e-07   p_cons 9.079447e-01   p_joint 2.222222e-06

Joint ci ratio: 1.239611e+00	ci left: 1.013639e-06	ci right 4.208075e-06	k: 9	n:4060000
Cons ci ratio: 6.194509e-04	ci left: 9.076674e-01	ci right 9.082301e-01	k: 3686273	n:4060000
KS ci ratio: 2.771858e+00	ci left: 6.235913e-09	ci right 1.372325e-06	k: 1	n:4060000
DUSP27   4060000 perm   7799 sec   (521 perm/sec)   p_kst 2.463054e-07   p_cons 9.079490e-01   p_joint 2.216749e-06

Joint ci ratio: 1.239611e+00	ci left: 1.011149e-06	ci right 4.197736e-06	k: 9	n:4070000
Cons ci ratio: 6.186790e-04	ci left: 9.076706e-01	ci right 9.082325e-01	k: 3695364	n:4070000
KS ci ratio: 2.771858e+00	ci left: 6.220592e-09	ci right 1.368953e-06	k: 1	n:4070000
DUSP27   4070000 perm   7833 sec   (520 perm/sec)   p_kst 2.457002e-07   p_cons 9.079518e-01   p_joint 2.211302e-06

Joint ci ratio: 1.239611e+00	ci left: 1.008670e-06	ci right 4.187448e-06	k: 9	n:4080000
Cons ci ratio: 6.179090e-04	ci left: 9.076740e-01	ci right 9.082352e-01	k: 3704456	n:4080000
KS ci ratio: 2.771858e+00	ci left: 6.205345e-09	ci right 1.365598e-06	k: 1	n:4080000
DUSP27   4080000 perm   7867 sec   (519 perm/sec)   p_kst 2.450980e-07   p_cons 9.079549e-01   p_joint 2.205882e-06

Joint ci ratio: 1.239611e+00	ci left: 1.006204e-06	ci right 4.177209e-06	k: 9	n:4090000
Cons ci ratio: 6.171464e-04	ci left: 9.076761e-01	ci right 9.082367e-01	k: 3713543	n:4090000
KS ci ratio: 2.771858e+00	ci left: 6.190173e-09	ci right 1.362259e-06	k: 1	n:4090000
DUSP27   4090000 perm   7902 sec   (518 perm/sec)   p_kst 2.444988e-07   p_cons 9.079567e-01   p_joint 2.200489e-06

Joint ci ratio: 1.181923e+00	ci left: 1.169608e-06	ci right 4.485448e-06	k: 10	n:4100000
Cons ci ratio: 6.163714e-04	ci left: 9.076825e-01	ci right 9.082423e-01	k: 3722647	n:4100000
KS ci ratio: 2.771858e+00	ci left: 6.175075e-09	ci right 1.358937e-06	k: 1	n:4100000
DUSP27   4100000 perm   7936 sec   (517 perm/sec)   p_kst 2.439024e-07   p_cons 9.079627e-01   p_joint 2.439024e-06

Joint ci ratio: 1.181923e+00	ci left: 1.166762e-06	ci right 4.474535e-06	k: 10	n:4110000
Cons ci ratio: 6.156136e-04	ci left: 9.076848e-01	ci right 9.082440e-01	k: 3731735	n:4110000
KS ci ratio: 2.771858e+00	ci left: 6.160051e-09	ci right 1.355630e-06	k: 1	n:4110000
DUSP27   4110000 perm   7971 sec   (516 perm/sec)   p_kst 2.433090e-07   p_cons 9.079647e-01   p_joint 2.433090e-06

Joint ci ratio: 1.181923e+00	ci left: 1.163930e-06	ci right 4.463674e-06	k: 10	n:4120000
Cons ci ratio: 6.148970e-04	ci left: 9.076768e-01	ci right 9.082353e-01	k: 3740780	n:4120000
KS ci ratio: 2.771858e+00	ci left: 6.145099e-09	ci right 1.352340e-06	k: 1	n:4120000
DUSP27   4120000 perm   8005 sec   (515 perm/sec)   p_kst 2.427184e-07   p_cons 9.079563e-01   p_joint 2.427184e-06

Joint ci ratio: 1.181923e+00	ci left: 1.161112e-06	ci right 4.452866e-06	k: 10	n:4130000
Cons ci ratio: 6.141143e-04	ci left: 9.076874e-01	ci right 9.082452e-01	k: 3749902	n:4130000
KS ci ratio: 2.771858e+00	ci left: 6.130220e-09	ci right 1.349065e-06	k: 1	n:4130000
DUSP27   4130000 perm   8039 sec   (514 perm/sec)   p_kst 2.421308e-07   p_cons 9.079666e-01   p_joint 2.421308e-06

Joint ci ratio: 1.181923e+00	ci left: 1.158307e-06	ci right 4.442110e-06	k: 10	n:4140000
Cons ci ratio: 6.133746e-04	ci left: 9.076871e-01	ci right 9.082442e-01	k: 3758979	n:4140000
KS ci ratio: 2.771858e+00	ci left: 6.115413e-09	ci right 1.345807e-06	k: 1	n:4140000
DUSP27   4140000 perm   8074 sec   (513 perm/sec)   p_kst 2.415459e-07   p_cons 9.079659e-01   p_joint 2.415459e-06

Joint ci ratio: 1.181923e+00	ci left: 1.155516e-06	ci right 4.431407e-06	k: 10	n:4150000
Cons ci ratio: 6.126154e-04	ci left: 9.076928e-01	ci right 9.082493e-01	k: 3768081	n:4150000
KS ci ratio: 2.771858e+00	ci left: 6.100677e-09	ci right 1.342564e-06	k: 1	n:4150000
DUSP27   4150000 perm   8109 sec   (512 perm/sec)   p_kst 2.409639e-07   p_cons 9.079713e-01   p_joint 2.409639e-06

Joint ci ratio: 1.181923e+00	ci left: 1.152738e-06	ci right 4.420754e-06	k: 10	n:4160000
Cons ci ratio: 6.118907e-04	ci left: 9.076898e-01	ci right 9.082456e-01	k: 3777147	n:4160000
KS ci ratio: 2.771858e+00	ci left: 6.086011e-09	ci right 1.339337e-06	k: 1	n:4160000
DUSP27   4160000 perm   8144 sec   (511 perm/sec)   p_kst 2.403846e-07   p_cons 9.079680e-01   p_joint 2.403846e-06

Joint ci ratio: 1.181923e+00	ci left: 1.149974e-06	ci right 4.410153e-06	k: 10	n:4170000
Cons ci ratio: 6.111764e-04	ci left: 9.076847e-01	ci right 9.082399e-01	k: 3786204	n:4170000
KS ci ratio: 2.771858e+00	ci left: 6.071417e-09	ci right 1.336125e-06	k: 1	n:4170000
DUSP27   4170000 perm   8180 sec   (510 perm/sec)   p_kst 2.398082e-07   p_cons 9.079626e-01   p_joint 2.398082e-06

Joint ci ratio: 1.181923e+00	ci left: 1.147223e-06	ci right 4.399602e-06	k: 10	n:4180000
Cons ci ratio: 6.104271e-04	ci left: 9.076899e-01	ci right 9.082444e-01	k: 3795304	n:4180000
KS ci ratio: 2.771858e+00	ci left: 6.056892e-09	ci right 1.332928e-06	k: 1	n:4180000
DUSP27   4180000 perm   8215 sec   (509 perm/sec)   p_kst 2.392344e-07   p_cons 9.079675e-01   p_joint 2.392344e-06

Joint ci ratio: 1.181923e+00	ci left: 1.144485e-06	ci right 4.389102e-06	k: 10	n:4190000
Cons ci ratio: 6.096571e-04	ci left: 9.077016e-01	ci right 9.082554e-01	k: 3804431	n:4190000
KS ci ratio: 2.771858e+00	ci left: 6.042436e-09	ci right 1.329747e-06	k: 1	n:4190000
DUSP27   4190000 perm   8250 sec   (508 perm/sec)   p_kst 2.386635e-07   p_cons 9.079788e-01   p_joint 2.386635e-06

Joint ci ratio: 1.181923e+00	ci left: 1.141760e-06	ci right 4.378652e-06	k: 10	n:4200000
Cons ci ratio: 6.089367e-04	ci left: 9.077003e-01	ci right 9.082534e-01	k: 3813504	n:4200000
KS ci ratio: 2.771858e+00	ci left: 6.028049e-09	ci right 1.326581e-06	k: 1	n:4200000
DUSP27   4200000 perm   8285 sec   (507 perm/sec)   p_kst 2.380952e-07   p_cons 9.079771e-01   p_joint 2.380952e-06

Joint ci ratio: 1.181923e+00	ci left: 1.139048e-06	ci right 4.368251e-06	k: 10	n:4210000
Cons ci ratio: 6.081956e-04	ci left: 9.077054e-01	ci right 9.082579e-01	k: 3822604	n:4210000
KS ci ratio: 2.771858e+00	ci left: 6.013731e-09	ci right 1.323430e-06	k: 1	n:4210000
DUSP27   4210000 perm   8321 sec   (506 perm/sec)   p_kst 2.375297e-07   p_cons 9.079819e-01   p_joint 2.375297e-06

Joint ci ratio: 1.181923e+00	ci left: 1.136349e-06	ci right 4.357900e-06	k: 10	n:4220000
Cons ci ratio: 6.074563e-04	ci left: 9.077108e-01	ci right 9.082626e-01	k: 3831705	n:4220000
KS ci ratio: 2.771858e+00	ci left: 5.999481e-09	ci right 1.320294e-06	k: 1	n:4220000
DUSP27   4220000 perm   8356 sec   (505 perm/sec)   p_kst 2.369668e-07   p_cons 9.079870e-01   p_joint 2.369668e-06

Joint ci ratio: 1.181923e+00	ci left: 1.133662e-06	ci right 4.347598e-06	k: 10	n:4230000
Cons ci ratio: 6.067558e-04	ci left: 9.077062e-01	ci right 9.082573e-01	k: 3840764	n:4230000
KS ci ratio: 2.771858e+00	ci left: 5.985298e-09	ci right 1.317173e-06	k: 1	n:4230000
DUSP27   4230000 perm   8392 sec   (504 perm/sec)   p_kst 2.364066e-07   p_cons 9.079820e-01   p_joint 2.364066e-06

Joint ci ratio: 1.181923e+00	ci left: 1.130988e-06	ci right 4.337344e-06	k: 10	n:4240000
Cons ci ratio: 6.060149e-04	ci left: 9.077134e-01	ci right 9.082639e-01	k: 3849873	n:4240000
KS ci ratio: 2.771858e+00	ci left: 5.971181e-09	ci right 1.314066e-06	k: 1	n:4240000
DUSP27   4240000 perm   8427 sec   (503 perm/sec)   p_kst 2.358491e-07   p_cons 9.079889e-01   p_joint 2.358491e-06

Joint ci ratio: 1.181923e+00	ci left: 1.128327e-06	ci right 4.327138e-06	k: 10	n:4250000
Cons ci ratio: 6.052835e-04	ci left: 9.077187e-01	ci right 9.082685e-01	k: 3858974	n:4250000
KS ci ratio: 2.771858e+00	ci left: 5.957131e-09	ci right 1.310974e-06	k: 1	n:4250000
DUSP27   4250000 perm   8464 sec   (502 perm/sec)   p_kst 2.352941e-07   p_cons 9.079939e-01   p_joint 2.352941e-06

Joint ci ratio: 1.181923e+00	ci left: 1.125679e-06	ci right 4.316981e-06	k: 10	n:4260000
Cons ci ratio: 6.045488e-04	ci left: 9.077256e-01	ci right 9.082748e-01	k: 3868082	n:4260000
KS ci ratio: 2.771858e+00	ci left: 5.943147e-09	ci right 1.307897e-06	k: 1	n:4260000
DUSP27   4260000 perm   8500 sec   (501 perm/sec)   p_kst 2.347418e-07   p_cons 9.080005e-01   p_joint 2.347418e-06

Joint ci ratio: 1.181923e+00	ci left: 1.123042e-06	ci right 4.306871e-06	k: 10	n:4270000
Cons ci ratio: 6.038684e-04	ci left: 9.077182e-01	ci right 9.082667e-01	k: 3877129	n:4270000
KS ci ratio: 2.771858e+00	ci left: 5.929229e-09	ci right 1.304834e-06	k: 1	n:4270000
DUSP27   4270000 perm   8536 sec   (500 perm/sec)   p_kst 2.341920e-07   p_cons 9.079927e-01   p_joint 2.341920e-06

Joint ci ratio: 1.181923e+00	ci left: 1.120418e-06	ci right 4.296808e-06	k: 10	n:4280000
Cons ci ratio: 6.031566e-04	ci left: 9.077202e-01	ci right 9.082681e-01	k: 3886216	n:4280000
KS ci ratio: 2.771858e+00	ci left: 5.915376e-09	ci right 1.301785e-06	k: 1	n:4280000
DUSP27   4280000 perm   8572 sec   (499 perm/sec)   p_kst 2.336449e-07   p_cons 9.079944e-01   p_joint 2.336449e-06

Joint ci ratio: 1.181923e+00	ci left: 1.117807e-06	ci right 4.286792e-06	k: 10	n:4290000
Cons ci ratio: 6.024649e-04	ci left: 9.077172e-01	ci right 9.082645e-01	k: 3895282	n:4290000
KS ci ratio: 2.771858e+00	ci left: 5.901587e-09	ci right 1.298751e-06	k: 1	n:4290000
DUSP27   4290000 perm   8608 sec   (498 perm/sec)   p_kst 2.331002e-07   p_cons 9.079911e-01   p_joint 2.331002e-06

Joint ci ratio: 1.181923e+00	ci left: 1.115207e-06	ci right 4.276823e-06	k: 10	n:4300000
Cons ci ratio: 6.017807e-04	ci left: 9.077129e-01	ci right 9.082596e-01	k: 3904342	n:4300000
KS ci ratio: 2.771858e+00	ci left: 5.887862e-09	ci right 1.295730e-06	k: 1	n:4300000
DUSP27   4300000 perm   8645 sec   (497 perm/sec)   p_kst 2.325581e-07   p_cons 9.079865e-01   p_joint 2.325581e-06

Joint ci ratio: 1.181923e+00	ci left: 1.112620e-06	ci right 4.266900e-06	k: 10	n:4310000
Cons ci ratio: 6.010470e-04	ci left: 9.077230e-01	ci right 9.082690e-01	k: 3913464	n:4310000
KS ci ratio: 2.771858e+00	ci left: 5.874201e-09	ci right 1.292724e-06	k: 1	n:4310000
DUSP27   4310000 perm   8681 sec   (496 perm/sec)   p_kst 2.320186e-07   p_cons 9.079963e-01   p_joint 2.320186e-06

Joint ci ratio: 1.181923e+00	ci left: 1.110044e-06	ci right 4.257023e-06	k: 10	n:4320000
Cons ci ratio: 6.003434e-04	ci left: 9.077254e-01	ci right 9.082708e-01	k: 3922553	n:4320000
KS ci ratio: 2.771858e+00	ci left: 5.860604e-09	ci right 1.289732e-06	k: 1	n:4320000
DUSP27   4320000 perm   8718 sec   (496 perm/sec)   p_kst 2.314815e-07   p_cons 9.079984e-01   p_joint 2.314815e-06

Joint ci ratio: 1.181923e+00	ci left: 1.107481e-06	ci right 4.247191e-06	k: 10	n:4330000
Cons ci ratio: 5.996680e-04	ci left: 9.077207e-01	ci right 9.082654e-01	k: 3931611	n:4330000
KS ci ratio: 2.771858e+00	ci left: 5.847069e-09	ci right 1.286753e-06	k: 1	n:4330000
DUSP27   4330000 perm   8754 sec   (495 perm/sec)   p_kst 2.309469e-07   p_cons 9.079933e-01   p_joint 2.309469e-06

Joint ci ratio: 1.181923e+00	ci left: 1.104929e-06	ci right 4.237405e-06	k: 10	n:4340000
Cons ci ratio: 5.989734e-04	ci left: 9.077219e-01	ci right 9.082660e-01	k: 3940695	n:4340000
KS ci ratio: 2.771858e+00	ci left: 5.833596e-09	ci right 1.283788e-06	k: 1	n:4340000
DUSP27   4340000 perm   8791 sec   (494 perm/sec)   p_kst 2.304147e-07   p_cons 9.079942e-01   p_joint 2.304147e-06

Joint ci ratio: 1.181923e+00	ci left: 1.102389e-06	ci right 4.227664e-06	k: 10	n:4350000
Cons ci ratio: 5.982779e-04	ci left: 9.077241e-01	ci right 9.082675e-01	k: 3949783	n:4350000
KS ci ratio: 2.771858e+00	ci left: 5.820186e-09	ci right 1.280837e-06	k: 1	n:4350000
DUSP27   4350000 perm   8828 sec   (493 perm/sec)   p_kst 2.298851e-07   p_cons 9.079961e-01   p_joint 2.298851e-06

Joint ci ratio: 1.181923e+00	ci left: 1.099860e-06	ci right 4.217968e-06	k: 10	n:4360000
Cons ci ratio: 5.976028e-04	ci left: 9.077212e-01	ci right 9.082640e-01	k: 3958849	n:4360000
KS ci ratio: 2.771858e+00	ci left: 5.806837e-09	ci right 1.277899e-06	k: 1	n:4360000
DUSP27   4360000 perm   8864 sec   (492 perm/sec)   p_kst 2.293578e-07   p_cons 9.079929e-01   p_joint 2.293578e-06

Joint ci ratio: 1.239611e+00	ci left: 9.417334e-07	ci right 3.909562e-06	k: 9	n:4370000
Cons ci ratio: 5.969145e-04	ci left: 9.077227e-01	ci right 9.082649e-01	k: 3967934	n:4370000
KS ci ratio: 2.771858e+00	ci left: 5.793549e-09	ci right 1.274975e-06	k: 1	n:4370000
DUSP27   4370000 perm   8901 sec   (491 perm/sec)   p_kst 2.288330e-07   p_cons 9.079941e-01   p_joint 2.059497e-06

Joint ci ratio: 1.239611e+00	ci left: 9.395833e-07	ci right 3.900636e-06	k: 9	n:4380000
Cons ci ratio: 5.962286e-04	ci left: 9.077241e-01	ci right 9.082657e-01	k: 3977019	n:4380000
KS ci ratio: 2.771858e+00	ci left: 5.780321e-09	ci right 1.272064e-06	k: 1	n:4380000
DUSP27   4380000 perm   8938 sec   (490 perm/sec)   p_kst 2.283105e-07   p_cons 9.079952e-01   p_joint 2.054795e-06

Joint ci ratio: 1.239611e+00	ci left: 9.374430e-07	ci right 3.891751e-06	k: 9	n:4390000
Cons ci ratio: 5.955775e-04	ci left: 9.077165e-01	ci right 9.082575e-01	k: 3986064	n:4390000
KS ci ratio: 2.771858e+00	ci left: 5.767154e-09	ci right 1.269166e-06	k: 1	n:4390000
DUSP27   4390000 perm   8976 sec   (489 perm/sec)   p_kst 2.277904e-07   p_cons 9.079872e-01   p_joint 2.050114e-06

Joint ci ratio: 1.239611e+00	ci left: 9.353125e-07	ci right 3.882906e-06	k: 9	n:4400000
Cons ci ratio: 5.949261e-04	ci left: 9.077095e-01	ci right 9.082499e-01	k: 3995112	n:4400000
KS ci ratio: 2.771858e+00	ci left: 5.754047e-09	ci right 1.266282e-06	k: 1	n:4400000
DUSP27   4400000 perm   9012 sec   (488 perm/sec)   p_kst 2.272727e-07   p_cons 9.079800e-01   p_joint 2.045455e-06

Joint ci ratio: 1.239611e+00	ci left: 9.331916e-07	ci right 3.874102e-06	k: 9	n:4410000
Cons ci ratio: 5.942301e-04	ci left: 9.077158e-01	ci right 9.082556e-01	k: 4004218	n:4410000
KS ci ratio: 2.771858e+00	ci left: 5.741000e-09	ci right 1.263411e-06	k: 1	n:4410000
DUSP27   4410000 perm   9049 sec   (487 perm/sec)   p_kst 2.267574e-07   p_cons 9.079859e-01   p_joint 2.040816e-06

Joint ci ratio: 1.239611e+00	ci left: 9.310803e-07	ci right 3.865337e-06	k: 9	n:4420000
Cons ci ratio: 5.935654e-04	ci left: 9.077139e-01	ci right 9.082530e-01	k: 4013288	n:4420000
KS ci ratio: 2.771858e+00	ci left: 5.728011e-09	ci right 1.260552e-06	k: 1	n:4420000
DUSP27   4420000 perm   9086 sec   (486 perm/sec)   p_kst 2.262443e-07   p_cons 9.079837e-01   p_joint 2.036199e-06

Joint ci ratio: 1.239611e+00	ci left: 9.289785e-07	ci right 3.856611e-06	k: 9	n:4430000
Cons ci ratio: 5.929254e-04	ci left: 9.077056e-01	ci right 9.082442e-01	k: 4022330	n:4430000
KS ci ratio: 2.771858e+00	ci left: 5.715081e-09	ci right 1.257707e-06	k: 1	n:4430000
DUSP27   4430000 perm   9123 sec   (486 perm/sec)   p_kst 2.257336e-07   p_cons 9.079752e-01   p_joint 2.031603e-06

Joint ci ratio: 1.239611e+00	ci left: 9.268862e-07	ci right 3.847925e-06	k: 9	n:4440000
Cons ci ratio: 5.922723e-04	ci left: 9.077017e-01	ci right 9.082397e-01	k: 4031391	n:4440000
KS ci ratio: 2.771858e+00	ci left: 5.702209e-09	ci right 1.254874e-06	k: 1	n:4440000
DUSP27   4440000 perm   9160 sec   (485 perm/sec)   p_kst 2.252252e-07   p_cons 9.079709e-01   p_joint 2.027027e-06

Joint ci ratio: 1.239611e+00	ci left: 9.248033e-07	ci right 3.839278e-06	k: 9	n:4450000
Cons ci ratio: 5.915736e-04	ci left: 9.077113e-01	ci right 9.082486e-01	k: 4040512	n:4450000
KS ci ratio: 2.771858e+00	ci left: 5.689395e-09	ci right 1.252054e-06	k: 1	n:4450000
DUSP27   4450000 perm   9197 sec   (484 perm/sec)   p_kst 2.247191e-07   p_cons 9.079802e-01   p_joint 2.022472e-06

Joint ci ratio: 1.239611e+00	ci left: 9.227298e-07	ci right 3.830670e-06	k: 9	n:4460000
Cons ci ratio: 5.909178e-04	ci left: 9.077094e-01	ci right 9.082461e-01	k: 4049582	n:4460000
KS ci ratio: 2.771858e+00	ci left: 5.676638e-09	ci right 1.249247e-06	k: 1	n:4460000
DUSP27   4460000 perm   9234 sec   (483 perm/sec)   p_kst 2.242152e-07   p_cons 9.079780e-01   p_joint 2.017937e-06

Joint ci ratio: 1.239611e+00	ci left: 9.206655e-07	ci right 3.822100e-06	k: 9	n:4470000
Cons ci ratio: 5.902365e-04	ci left: 9.077153e-01	ci right 9.082515e-01	k: 4058687	n:4470000
KS ci ratio: 2.771858e+00	ci left: 5.663939e-09	ci right 1.246452e-06	k: 1	n:4470000
DUSP27   4470000 perm   9271 sec   (482 perm/sec)   p_kst 2.237136e-07   p_cons 9.079837e-01   p_joint 2.013423e-06

Joint ci ratio: 1.239611e+00	ci left: 9.186105e-07	ci right 3.813569e-06	k: 9	n:4480000
Cons ci ratio: 5.894977e-04	ci left: 9.077382e-01	ci right 9.082737e-01	k: 4067868	n:4480000
KS ci ratio: 2.771858e+00	ci left: 5.651297e-09	ci right 1.243670e-06	k: 1	n:4480000
DUSP27   4480000 perm   9308 sec   (481 perm/sec)   p_kst 2.232143e-07   p_cons 9.080063e-01   p_joint 2.008929e-06

Joint ci ratio: 1.239611e+00	ci left: 9.165646e-07	ci right 3.805075e-06	k: 9	n:4490000
Cons ci ratio: 5.888676e-04	ci left: 9.077309e-01	ci right 9.082659e-01	k: 4076914	n:4490000
KS ci ratio: 2.771858e+00	ci left: 5.638710e-09	ci right 1.240900e-06	k: 1	n:4490000
DUSP27   4490000 perm   9345 sec   (480 perm/sec)   p_kst 2.227171e-07   p_cons 9.079987e-01   p_joint 2.004454e-06

Joint ci ratio: 1.239611e+00	ci left: 9.145277e-07	ci right 3.796620e-06	k: 9	n:4500000
Cons ci ratio: 5.882286e-04	ci left: 9.077268e-01	ci right 9.082611e-01	k: 4085974	n:4500000
KS ci ratio: 2.771858e+00	ci left: 5.626179e-09	ci right 1.238142e-06	k: 1	n:4500000
DUSP27   4500000 perm   9383 sec   (480 perm/sec)   p_kst 2.222222e-07   p_cons 9.079942e-01   p_joint 2.000000e-06

Joint ci ratio: 1.239611e+00	ci left: 9.125000e-07	ci right 3.788201e-06	k: 9	n:4510000
Cons ci ratio: 5.875386e-04	ci left: 9.077378e-01	ci right 9.082715e-01	k: 4095102	n:4510000
KS ci ratio: 2.771858e+00	ci left: 5.613705e-09	ci right 1.235397e-06	k: 1	n:4510000
DUSP27   4510000 perm   9421 sec   (479 perm/sec)   p_kst 2.217295e-07   p_cons 9.080049e-01   p_joint 1.995565e-06

Joint ci ratio: 1.239611e+00	ci left: 9.104812e-07	ci right 3.779820e-06	k: 9	n:4520000
Cons ci ratio: 5.611526e-04	ci left: 9.149700e-01	ci right 9.154838e-01	k: 4136827	n:4520000
KS ci ratio: 2.771858e+00	ci left: 5.601285e-09	ci right 1.232664e-06	k: 1	n:4520000
DUSP27   4520000 perm   9458 sec   (478 perm/sec)   p_kst 2.212389e-07   p_cons 9.152272e-01   p_joint 1.991150e-06

Joint ci ratio: 1.239611e+00	ci left: 9.084713e-07	ci right 3.771476e-06	k: 9	n:4530000
Cons ci ratio: 5.605235e-04	ci left: 9.149729e-01	ci right 9.154861e-01	k: 4145991	n:4530000
KS ci ratio: 2.771858e+00	ci left: 5.588920e-09	ci right 1.229943e-06	k: 1	n:4530000
DUSP27   4530000 perm   9496 sec   (477 perm/sec)   p_kst 2.207506e-07   p_cons 9.152298e-01   p_joint 1.986755e-06

Joint ci ratio: 1.239611e+00	ci left: 9.064702e-07	ci right 3.763169e-06	k: 9	n:4540000
Cons ci ratio: 5.599006e-04	ci left: 9.149747e-01	ci right 9.154873e-01	k: 4155150	n:4540000
KS ci ratio: 2.771858e+00	ci left: 5.576610e-09	ci right 1.227234e-06	k: 1	n:4540000
DUSP27   4540000 perm   9534 sec   (476 perm/sec)   p_kst 2.202643e-07   p_cons 9.152313e-01   p_joint 1.982379e-06

Joint ci ratio: 1.239611e+00	ci left: 9.044780e-07	ci right 3.754899e-06	k: 9	n:4550000
Cons ci ratio: 5.593240e-04	ci left: 9.149641e-01	ci right 9.154762e-01	k: 4164253	n:4550000
KS ci ratio: 2.771858e+00	ci left: 5.564354e-09	ci right 1.224536e-06	k: 1	n:4550000
DUSP27   4550000 perm   9572 sec   (475 perm/sec)   p_kst 2.197802e-07   p_cons 9.152204e-01   p_joint 1.978022e-06

Joint ci ratio: 1.239611e+00	ci left: 9.024945e-07	ci right 3.746664e-06	k: 9	n:4560000
Cons ci ratio: 5.587019e-04	ci left: 9.149668e-01	ci right 9.154783e-01	k: 4173416	n:4560000
KS ci ratio: 2.771858e+00	ci left: 5.552151e-09	ci right 1.221851e-06	k: 1	n:4560000
DUSP27   4560000 perm   9610 sec   (475 perm/sec)   p_kst 2.192982e-07   p_cons 9.152228e-01   p_joint 1.973684e-06

Joint ci ratio: 1.239611e+00	ci left: 9.005197e-07	ci right 3.738466e-06	k: 9	n:4570000
Cons ci ratio: 5.580660e-04	ci left: 9.149738e-01	ci right 9.154848e-01	k: 4182599	n:4570000
KS ci ratio: 2.771858e+00	ci left: 5.540002e-09	ci right 1.219177e-06	k: 1	n:4570000
DUSP27   4570000 perm   9648 sec   (474 perm/sec)   p_kst 2.188184e-07   p_cons 9.152295e-01   p_joint 1.969365e-06

Joint ci ratio: 1.239611e+00	ci left: 8.985535e-07	ci right 3.730303e-06	k: 9	n:4580000
Cons ci ratio: 5.574692e-04	ci left: 9.149705e-01	ci right 9.154809e-01	k: 4191735	n:4580000
KS ci ratio: 2.771858e+00	ci left: 5.527906e-09	ci right 1.216515e-06	k: 1	n:4580000
DUSP27   4580000 perm   9686 sec   (473 perm/sec)   p_kst 2.183406e-07   p_cons 9.152260e-01   p_joint 1.965066e-06

Joint ci ratio: 1.239611e+00	ci left: 8.965958e-07	ci right 3.722176e-06	k: 9	n:4590000
Cons ci ratio: 5.568658e-04	ci left: 9.149696e-01	ci right 9.154795e-01	k: 4200882	n:4590000
KS ci ratio: 2.771858e+00	ci left: 5.515862e-09	ci right 1.213865e-06	k: 1	n:4590000
DUSP27   4590000 perm   9724 sec   (472 perm/sec)   p_kst 2.178649e-07   p_cons 9.152248e-01   p_joint 1.960784e-06

Joint ci ratio: 1.239611e+00	ci left: 8.946467e-07	ci right 3.714084e-06	k: 9	n:4600000
Cons ci ratio: 5.562775e-04	ci left: 9.149651e-01	ci right 9.154744e-01	k: 4210012	n:4600000
KS ci ratio: 2.771858e+00	ci left: 5.503871e-09	ci right 1.211226e-06	k: 1	n:4600000
DUSP27   4600000 perm   9762 sec   (471 perm/sec)   p_kst 2.173913e-07   p_cons 9.152200e-01   p_joint 1.956522e-06

Joint ci ratio: 1.239611e+00	ci left: 8.927060e-07	ci right 3.706028e-06	k: 9	n:4610000
Cons ci ratio: 5.557229e-04	ci left: 9.149516e-01	ci right 9.154604e-01	k: 4219101	n:4610000
KS ci ratio: 2.771858e+00	ci left: 5.491932e-09	ci right 1.208599e-06	k: 1	n:4610000
DUSP27   4610000 perm   9801 sec   (470 perm/sec)   p_kst 2.169197e-07   p_cons 9.152063e-01   p_joint 1.952278e-06

Joint ci ratio: 1.239611e+00	ci left: 8.907738e-07	ci right 3.698006e-06	k: 9	n:4620000
Cons ci ratio: 5.551367e-04	ci left: 9.149476e-01	ci right 9.154558e-01	k: 4228233	n:4620000
KS ci ratio: 2.771858e+00	ci left: 5.480045e-09	ci right 1.205983e-06	k: 1	n:4620000
DUSP27   4620000 perm   9839 sec   (470 perm/sec)   p_kst 2.164502e-07   p_cons 9.152019e-01   p_joint 1.948052e-06

Joint ci ratio: 1.239611e+00	ci left: 8.888499e-07	ci right 3.690019e-06	k: 9	n:4630000
Cons ci ratio: 5.545561e-04	ci left: 9.149424e-01	ci right 9.154502e-01	k: 4237360	n:4630000
KS ci ratio: 2.771858e+00	ci left: 5.468209e-09	ci right 1.203378e-06	k: 1	n:4630000
DUSP27   4630000 perm   9878 sec   (469 perm/sec)   p_kst 2.159827e-07   p_cons 9.151965e-01   p_joint 1.943844e-06

Joint ci ratio: 1.385928e+00	ci left: 6.065440e-07	ci right 3.108333e-06	k: 7	n:4640000
Cons ci ratio: 5.539651e-04	ci left: 9.149408e-01	ci right 9.154479e-01	k: 4246503	n:4640000
KS ci ratio: 2.771858e+00	ci left: 5.456424e-09	ci right 1.200785e-06	k: 1	n:4640000
DUSP27   4640000 perm   9916 sec   (468 perm/sec)   p_kst 2.155172e-07   p_cons 9.151946e-01   p_joint 1.508621e-06

Joint ci ratio: 1.385928e+00	ci left: 6.052396e-07	ci right 3.101648e-06	k: 7	n:4650000
Cons ci ratio: 5.533484e-04	ci left: 9.149469e-01	ci right 9.154535e-01	k: 4255682	n:4650000
KS ci ratio: 2.771858e+00	ci left: 5.444690e-09	ci right 1.198202e-06	k: 1	n:4650000
DUSP27   4650000 perm   9955 sec   (467 perm/sec)   p_kst 2.150538e-07   p_cons 9.152004e-01   p_joint 1.505376e-06

Joint ci ratio: 1.385928e+00	ci left: 6.039408e-07	ci right 3.094992e-06	k: 7	n:4660000
Cons ci ratio: 5.527819e-04	ci left: 9.149394e-01	ci right 9.154455e-01	k: 4264798	n:4660000
KS ci ratio: 2.771858e+00	ci left: 5.433006e-09	ci right 1.195631e-06	k: 1	n:4660000
DUSP27   4660000 perm   9994 sec   (466 perm/sec)   p_kst 2.145923e-07   p_cons 9.151927e-01   p_joint 1.502146e-06

Joint ci ratio: 1.385928e+00	ci left: 6.026475e-07	ci right 3.088365e-06	k: 7	n:4670000
Cons ci ratio: 5.521714e-04	ci left: 9.149448e-01	ci right 9.154504e-01	k: 4273974	n:4670000
KS ci ratio: 2.771858e+00	ci left: 5.421372e-09	ci right 1.193071e-06	k: 1	n:4670000
DUSP27   4670000 perm   10033 sec   (465 perm/sec)   p_kst 2.141328e-07   p_cons 9.151979e-01   p_joint 1.498929e-06

Joint ci ratio: 1.385928e+00	ci left: 6.013598e-07	ci right 3.081766e-06	k: 7	n:4680000
Cons ci ratio: 5.515781e-04	ci left: 9.149460e-01	ci right 9.154510e-01	k: 4283130	n:4680000
KS ci ratio: 2.771858e+00	ci left: 5.409788e-09	ci right 1.190522e-06	k: 1	n:4680000
DUSP27   4680000 perm   10072 sec   (465 perm/sec)   p_kst 2.136752e-07   p_cons 9.151987e-01   p_joint 1.495726e-06

Joint ci ratio: 1.385928e+00	ci left: 6.000776e-07	ci right 3.075195e-06	k: 7	n:4690000
Cons ci ratio: 5.510344e-04	ci left: 9.149336e-01	ci right 9.154381e-01	k: 4292223	n:4690000
KS ci ratio: 2.771858e+00	ci left: 5.398253e-09	ci right 1.187983e-06	k: 1	n:4690000
DUSP27   4690000 perm   10110 sec   (464 perm/sec)   p_kst 2.132196e-07   p_cons 9.151861e-01   p_joint 1.492537e-06

Joint ci ratio: 1.385928e+00	ci left: 5.988009e-07	ci right 3.068652e-06	k: 7	n:4700000
Cons ci ratio: 5.504530e-04	ci left: 9.149324e-01	ci right 9.154364e-01	k: 4301368	n:4700000
KS ci ratio: 2.771858e+00	ci left: 5.386768e-09	ci right 1.185455e-06	k: 1	n:4700000
DUSP27   4700000 perm   10150 sec   (463 perm/sec)   p_kst 2.127660e-07   p_cons 9.151847e-01   p_joint 1.489362e-06

Joint ci ratio: 1.385928e+00	ci left: 5.975295e-07	ci right 3.062137e-06	k: 7	n:4710000
Cons ci ratio: 5.498615e-04	ci left: 9.149347e-01	ci right 9.154381e-01	k: 4310529	n:4710000
KS ci ratio: 2.771858e+00	ci left: 5.375331e-09	ci right 1.182939e-06	k: 1	n:4710000
DUSP27   4710000 perm   10188 sec   (462 perm/sec)   p_kst 2.123142e-07   p_cons 9.151866e-01   p_joint 1.486200e-06

Joint ci ratio: 1.481619e+00	ci left: 4.665032e-07	ci right 2.766836e-06	k: 6	n:4720000
Cons ci ratio: 5.492509e-04	ci left: 9.149428e-01	ci right 9.154457e-01	k: 4319718	n:4720000
KS ci ratio: 2.771858e+00	ci left: 5.363942e-09	ci right 1.180432e-06	k: 1	n:4720000
DUSP27   4720000 perm   10227 sec   (462 perm/sec)   p_kst 2.118644e-07   p_cons 9.151945e-01   p_joint 1.271186e-06

Joint ci ratio: 1.481619e+00	ci left: 4.655169e-07	ci right 2.760986e-06	k: 6	n:4730000
Cons ci ratio: 5.486587e-04	ci left: 9.149463e-01	ci right 9.154486e-01	k: 4328885	n:4730000
KS ci ratio: 2.771858e+00	ci left: 5.352602e-09	ci right 1.177937e-06	k: 1	n:4730000
DUSP27   4730000 perm   10267 sec   (461 perm/sec)   p_kst 2.114165e-07   p_cons 9.151977e-01   p_joint 1.268499e-06

Joint ci ratio: 1.481619e+00	ci left: 4.645348e-07	ci right 2.755161e-06	k: 6	n:4740000
Cons ci ratio: 5.480908e-04	ci left: 9.149434e-01	ci right 9.154452e-01	k: 4338022	n:4740000
KS ci ratio: 2.771858e+00	ci left: 5.341310e-09	ci right 1.175452e-06	k: 1	n:4740000
DUSP27   4740000 perm   10306 sec   (460 perm/sec)   p_kst 2.109705e-07   p_cons 9.151945e-01   p_joint 1.265823e-06

Joint ci ratio: 1.481619e+00	ci left: 4.635568e-07	ci right 2.749361e-06	k: 6	n:4750000
Cons ci ratio: 5.475143e-04	ci left: 9.149434e-01	ci right 9.154447e-01	k: 4347173	n:4750000
KS ci ratio: 2.771858e+00	ci left: 5.330065e-09	ci right 1.172977e-06	k: 1	n:4750000
DUSP27   4750000 perm   10345 sec   (459 perm/sec)   p_kst 2.105263e-07   p_cons 9.151943e-01   p_joint 1.263158e-06

Joint ci ratio: 1.481619e+00	ci left: 4.625830e-07	ci right 2.743585e-06	k: 6	n:4760000
Cons ci ratio: 5.469284e-04	ci left: 9.149466e-01	ci right 9.154474e-01	k: 4356339	n:4760000
KS ci ratio: 2.771858e+00	ci left: 5.318867e-09	ci right 1.170513e-06	k: 1	n:4760000
DUSP27   4760000 perm   10385 sec   (458 perm/sec)   p_kst 2.100840e-07   p_cons 9.151973e-01   p_joint 1.260504e-06

Joint ci ratio: 1.481619e+00	ci left: 4.616132e-07	ci right 2.737833e-06	k: 6	n:4770000
Cons ci ratio: 5.463150e-04	ci left: 9.149582e-01	ci right 9.154584e-01	k: 4365545	n:4770000
KS ci ratio: 2.771858e+00	ci left: 5.307716e-09	ci right 1.168059e-06	k: 1	n:4770000
DUSP27   4770000 perm   10424 sec   (458 perm/sec)   p_kst 2.096436e-07   p_cons 9.152086e-01   p_joint 1.257862e-06

Joint ci ratio: 1.481619e+00	ci left: 4.606475e-07	ci right 2.732106e-06	k: 6	n:4780000
Cons ci ratio: 5.457264e-04	ci left: 9.149633e-01	ci right 9.154630e-01	k: 4374720	n:4780000
KS ci ratio: 2.771858e+00	ci left: 5.296612e-09	ci right 1.165615e-06	k: 1	n:4780000
DUSP27   4780000 perm   10464 sec   (457 perm/sec)   p_kst 2.092050e-07   p_cons 9.152134e-01   p_joint 1.255230e-06

Joint ci ratio: 1.481619e+00	ci left: 4.596858e-07	ci right 2.726402e-06	k: 6	n:4790000
Cons ci ratio: 5.451616e-04	ci left: 9.149621e-01	ci right 9.154612e-01	k: 4383865	n:4790000
KS ci ratio: 2.771858e+00	ci left: 5.285555e-09	ci right 1.163182e-06	k: 1	n:4790000
DUSP27   4790000 perm   10504 sec   (456 perm/sec)   p_kst 2.087683e-07   p_cons 9.152119e-01   p_joint 1.252610e-06

Joint ci ratio: 1.481619e+00	ci left: 4.587281e-07	ci right 2.720722e-06	k: 6	n:4800000
Cons ci ratio: 5.445753e-04	ci left: 9.149675e-01	ci right 9.154661e-01	k: 4393042	n:4800000
KS ci ratio: 2.771858e+00	ci left: 5.274543e-09	ci right 1.160758e-06	k: 1	n:4800000
DUSP27   4800000 perm   10544 sec   (455 perm/sec)   p_kst 2.083333e-07   p_cons 9.152171e-01   p_joint 1.250000e-06

Joint ci ratio: 1.481620e+00	ci left: 4.577744e-07	ci right 2.715065e-06	k: 6	n:4810000
Cons ci ratio: 5.440105e-04	ci left: 9.149673e-01	ci right 9.154654e-01	k: 4402192	n:4810000
KS ci ratio: 2.771858e+00	ci left: 5.263578e-09	ci right 1.158345e-06	k: 1	n:4810000
DUSP27   4810000 perm   10584 sec   (454 perm/sec)   p_kst 2.079002e-07   p_cons 9.152166e-01   p_joint 1.247401e-06

Joint ci ratio: 1.481620e+00	ci left: 4.568247e-07	ci right 2.709432e-06	k: 6	n:4820000
Cons ci ratio: 5.434271e-04	ci left: 9.149730e-01	ci right 9.154705e-01	k: 4411370	n:4820000
KS ci ratio: 2.771858e+00	ci left: 5.252657e-09	ci right 1.155942e-06	k: 1	n:4820000
DUSP27   4820000 perm   10623 sec   (454 perm/sec)   p_kst 2.074689e-07   p_cons 9.152220e-01   p_joint 1.244813e-06

Joint ci ratio: 1.481620e+00	ci left: 4.558789e-07	ci right 2.703823e-06	k: 6	n:4830000
Cons ci ratio: 5.428456e-04	ci left: 9.149786e-01	ci right 9.154756e-01	k: 4420548	n:4830000
KS ci ratio: 2.771858e+00	ci left: 5.241782e-09	ci right 1.153549e-06	k: 1	n:4830000
DUSP27   4830000 perm   10663 sec   (453 perm/sec)   p_kst 2.070393e-07   p_cons 9.152273e-01   p_joint 1.242236e-06

Joint ci ratio: 1.481620e+00	ci left: 4.549370e-07	ci right 2.698236e-06	k: 6	n:4840000
Cons ci ratio: 5.422803e-04	ci left: 9.149800e-01	ci right 9.154765e-01	k: 4429706	n:4840000
KS ci ratio: 2.771858e+00	ci left: 5.230952e-09	ci right 1.151165e-06	k: 1	n:4840000
DUSP27   4840000 perm   10703 sec   (452 perm/sec)   p_kst 2.066116e-07   p_cons 9.152285e-01   p_joint 1.239669e-06

Joint ci ratio: 1.481620e+00	ci left: 4.539989e-07	ci right 2.692673e-06	k: 6	n:4850000
Cons ci ratio: 5.417140e-04	ci left: 9.149823e-01	ci right 9.154783e-01	k: 4438868	n:4850000
KS ci ratio: 2.771858e+00	ci left: 5.220167e-09	ci right 1.148792e-06	k: 1	n:4850000
DUSP27   4850000 perm   10744 sec   (451 perm/sec)   p_kst 2.061856e-07   p_cons 9.152305e-01   p_joint 1.237113e-06

Joint ci ratio: 1.481620e+00	ci left: 4.530648e-07	ci right 2.687133e-06	k: 6	n:4860000
Cons ci ratio: 5.411782e-04	ci left: 9.149763e-01	ci right 9.154718e-01	k: 4447990	n:4860000
KS ci ratio: 2.771858e+00	ci left: 5.209426e-09	ci right 1.146428e-06	k: 1	n:4860000
DUSP27   4860000 perm   10784 sec   (451 perm/sec)   p_kst 2.057613e-07   p_cons 9.152243e-01   p_joint 1.234568e-06

Joint ci ratio: 1.481620e+00	ci left: 4.521345e-07	ci right 2.681615e-06	k: 6	n:4870000
Cons ci ratio: 5.406081e-04	ci left: 9.149806e-01	ci right 9.154756e-01	k: 4457162	n:4870000
KS ci ratio: 2.771858e+00	ci left: 5.198729e-09	ci right 1.144074e-06	k: 1	n:4870000
DUSP27   4870000 perm   10824 sec   (450 perm/sec)   p_kst 2.053388e-07   p_cons 9.152283e-01   p_joint 1.232033e-06

Joint ci ratio: 1.481620e+00	ci left: 4.512080e-07	ci right 2.676120e-06	k: 6	n:4880000
Cons ci ratio: 5.400648e-04	ci left: 9.149777e-01	ci right 9.154722e-01	k: 4466299	n:4880000
KS ci ratio: 2.771858e+00	ci left: 5.188076e-09	ci right 1.141730e-06	k: 1	n:4880000
DUSP27   4880000 perm   10864 sec   (449 perm/sec)   p_kst 2.049180e-07   p_cons 9.152252e-01   p_joint 1.229508e-06

Joint ci ratio: 1.481620e+00	ci left: 4.502853e-07	ci right 2.670647e-06	k: 6	n:4890000
Cons ci ratio: 5.395409e-04	ci left: 9.149697e-01	ci right 9.154637e-01	k: 4475411	n:4890000
KS ci ratio: 2.771858e+00	ci left: 5.177466e-09	ci right 1.139395e-06	k: 1	n:4890000
DUSP27   4890000 perm   10904 sec   (448 perm/sec)   p_kst 2.044990e-07   p_cons 9.152170e-01   p_joint 1.226994e-06

Joint ci ratio: 1.481620e+00	ci left: 4.493663e-07	ci right 2.665197e-06	k: 6	n:4900000
Cons ci ratio: 5.389867e-04	ci left: 9.149710e-01	ci right 9.154645e-01	k: 4484568	n:4900000
KS ci ratio: 2.771858e+00	ci left: 5.166900e-09	ci right 1.137070e-06	k: 1	n:4900000
DUSP27   4900000 perm   10945 sec   (448 perm/sec)   p_kst 2.040816e-07   p_cons 9.152180e-01   p_joint 1.224490e-06

Joint ci ratio: 1.481620e+00	ci left: 4.484511e-07	ci right 2.659769e-06	k: 6	n:4910000
Cons ci ratio: 5.384348e-04	ci left: 9.149720e-01	ci right 9.154650e-01	k: 4493724	n:4910000
KS ci ratio: 2.771858e+00	ci left: 5.156376e-09	ci right 1.134754e-06	k: 1	n:4910000
DUSP27   4910000 perm   10985 sec   (447 perm/sec)   p_kst 2.036660e-07   p_cons 9.152187e-01   p_joint 1.221996e-06

Joint ci ratio: 1.481620e+00	ci left: 4.475396e-07	ci right 2.654363e-06	k: 6	n:4920000
Cons ci ratio: 5.378586e-04	ci left: 9.149806e-01	ci right 9.154730e-01	k: 4502917	n:4920000
KS ci ratio: 2.771858e+00	ci left: 5.145896e-09	ci right 1.132447e-06	k: 1	n:4920000
DUSP27   4920000 perm   11024 sec   (446 perm/sec)   p_kst 2.032520e-07   p_cons 9.152270e-01   p_joint 1.219512e-06

Joint ci ratio: 1.481620e+00	ci left: 4.466318e-07	ci right 2.648979e-06	k: 6	n:4930000
Cons ci ratio: 5.372976e-04	ci left: 9.149852e-01	ci right 9.154772e-01	k: 4512091	n:4930000
KS ci ratio: 2.771858e+00	ci left: 5.135458e-09	ci right 1.130150e-06	k: 1	n:4930000
DUSP27   4930000 perm   11065 sec   (446 perm/sec)   p_kst 2.028398e-07   p_cons 9.152314e-01   p_joint 1.217039e-06

Joint ci ratio: 1.481620e+00	ci left: 4.457277e-07	ci right 2.643616e-06	k: 6	n:4940000
Cons ci ratio: 5.367509e-04	ci left: 9.149862e-01	ci right 9.154777e-01	k: 4521247	n:4940000
KS ci ratio: 2.771858e+00	ci left: 5.125062e-09	ci right 1.127863e-06	k: 1	n:4940000
DUSP27   4940000 perm   11106 sec   (445 perm/sec)   p_kst 2.024291e-07   p_cons 9.152322e-01   p_joint 1.214575e-06

Joint ci ratio: 1.481620e+00	ci left: 4.448272e-07	ci right 2.638276e-06	k: 6	n:4950000
Cons ci ratio: 5.362122e-04	ci left: 9.149854e-01	ci right 9.154763e-01	k: 4530394	n:4950000
KS ci ratio: 2.771858e+00	ci left: 5.114709e-09	ci right 1.125584e-06	k: 1	n:4950000
DUSP27   4950000 perm   11148 sec   (444 perm/sec)   p_kst 2.020202e-07   p_cons 9.152311e-01   p_joint 1.212121e-06

Joint ci ratio: 1.481620e+00	ci left: 4.439304e-07	ci right 2.632957e-06	k: 6	n:4960000
Cons ci ratio: 5.356535e-04	ci left: 9.149908e-01	ci right 9.154813e-01	k: 4539572	n:4960000
KS ci ratio: 2.771858e+00	ci left: 5.104397e-09	ci right 1.123315e-06	k: 1	n:4960000
DUSP27   4960000 perm   11188 sec   (443 perm/sec)   p_kst 2.016129e-07   p_cons 9.152363e-01   p_joint 1.209677e-06

Joint ci ratio: 1.481620e+00	ci left: 4.430372e-07	ci right 2.627659e-06	k: 6	n:4970000
Cons ci ratio: 5.350438e-04	ci left: 9.150116e-01	ci right 9.155014e-01	k: 4548826	n:4970000
KS ci ratio: 2.771858e+00	ci left: 5.094126e-09	ci right 1.121054e-06	k: 1	n:4970000
DUSP27   4970000 perm   11229 sec   (443 perm/sec)   p_kst 2.012072e-07   p_cons 9.152567e-01   p_joint 1.207243e-06

Joint ci ratio: 1.481620e+00	ci left: 4.421476e-07	ci right 2.622382e-06	k: 6	n:4980000
Cons ci ratio: 5.344887e-04	ci left: 9.150169e-01	ci right 9.155063e-01	k: 4558004	n:4980000
KS ci ratio: 2.771858e+00	ci left: 5.083897e-09	ci right 1.118803e-06	k: 1	n:4980000
DUSP27   4980000 perm   11269 sec   (442 perm/sec)   p_kst 2.008032e-07   p_cons 9.152618e-01   p_joint 1.204819e-06

Joint ci ratio: 1.481620e+00	ci left: 4.412615e-07	ci right 2.617127e-06	k: 6	n:4990000
Cons ci ratio: 5.339099e-04	ci left: 9.150297e-01	ci right 9.155185e-01	k: 4567219	n:4990000
KS ci ratio: 2.771858e+00	ci left: 5.073709e-09	ci right 1.116561e-06	k: 1	n:4990000
DUSP27   4990000 perm   11310 sec   (441 perm/sec)   p_kst 2.004008e-07   p_cons 9.152743e-01   p_joint 1.202405e-06

Joint ci ratio: 1.481620e+00	ci left: 4.403790e-07	ci right 2.611893e-06	k: 6	n:5000000
Cons ci ratio: 5.333900e-04	ci left: 9.150258e-01	ci right 9.155142e-01	k: 4576351	n:5000000
KS ci ratio: 2.771858e+00	ci left: 5.063562e-09	ci right 1.114328e-06	k: 1	n:5000000
DUSP27   5000000 perm   11351 sec   (440 perm/sec)   p_kst 2.000000e-07   p_cons 9.152702e-01   p_joint 1.200000e-06

Outputting figure to mutsig2_images.part000000000053/DUSP27.3_3497_5000000_2e-07_0.91527_1.2e-06.png
                gene_name: DUSP27
               theta_stop: 2.8 
                    nperm: 5000000 
                     p_ks: 2.00e-07 
        ci_ks_bounds_left: 5.06e-09 
       ci_ks_bounds_right: 1.11e-06 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1.20e-06 
     ci_joint_bounds_left: 4.40e-07 
    ci_joint_bounds_right: 2.61e-06 

Current progress: 25 percent done.
DRD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.688109e-03	ci left: 9.683648e-01	ci right 9.749566e-01	k: 9718	n:10000
Cons ci ratio: 3.009633e-02	ci left: 6.195460e-01	ci right 6.385788e-01	k: 6291	n:10000
KS ci ratio: 3.431475e-02	ci left: 5.563181e-01	ci right 5.758434e-01	k: 5661	n:10000
DRD5   10000 perm   2 sec   (6549 perm/sec)   p_kst 5.661000e-01   p_cons 6.291000e-01   p_joint 9.718000e-01

Outputting figure to mutsig2_images.part000000000053/DRD5.2_1438_10000_0.5661_0.6291_0.9718.png
                gene_name: DRD5
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 50 percent done.
DSCAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.126095e-02	ci left: 7.643573e-01	ci right 7.808836e-01	k: 7727	n:10000
KS ci ratio: 4.800080e-02	ci left: 3.903785e-01	ci right 4.096798e-01	k: 4000	n:10000
DSCAM   10000 perm   2 sec   (4774 perm/sec)   p_kst 4.000000e-01   p_cons 7.727000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000053/DSCAM.2_6171_10000_0.4_0.7727_1.png
                gene_name: DSCAM
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
DUOX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.181215e+00	ci left: 4.796397e-04	ci right 1.838264e-03	k: 10	n:10000
Cons ci ratio: 2.809059e-01	ci left: 1.641496e-02	ci right 2.187026e-02	k: 190	n:10000
KS ci ratio: 3.716778e-01	ci left: 8.958341e-03	ci right 1.313383e-02	k: 109	n:10000
DUOX2   10000 perm   2 sec   (5295 perm/sec)   p_kst 1.090000e-02   p_cons 1.900000e-02   p_joint 1.000000e-03

Joint ci ratio: 5.971366e-01	ci left: 1.513902e-03	ci right 2.837541e-03	k: 42	n:20000
Cons ci ratio: 1.957807e-01	ci left: 1.772392e-02	ci right 2.161749e-02	k: 392	n:20000
KS ci ratio: 2.640385e-01	ci left: 9.460703e-03	ci right 1.238410e-02	k: 217	n:20000
DUOX2   20000 perm   4 sec   (4776 perm/sec)   p_kst 1.085000e-02   p_cons 1.960000e-02   p_joint 2.100000e-03

Joint ci ratio: 7.684293e-01	ci left: 5.393597e-04	ci right 1.229920e-03	k: 25	n:30000
Cons ci ratio: 1.596485e-01	ci left: 1.812542e-02	ci right 2.130189e-02	k: 590	n:30000
KS ci ratio: 2.222095e-01	ci left: 9.125451e-03	ci right 1.143753e-02	k: 307	n:30000
DUOX2   30000 perm   7 sec   (4585 perm/sec)   p_kst 1.023333e-02   p_cons 1.966667e-02   p_joint 8.333333e-04

Joint ci ratio: 7.405418e-01	ci left: 4.448749e-04	ci right 9.819388e-04	k: 27	n:40000
Cons ci ratio: 1.398990e-01	ci left: 1.790183e-02	ci right 2.061860e-02	k: 769	n:40000
KS ci ratio: 1.918899e-01	ci left: 9.333738e-03	ci right 1.133831e-02	k: 412	n:40000
DUOX2   40000 perm   9 sec   (4425 perm/sec)   p_kst 1.030000e-02   p_cons 1.922500e-02   p_joint 6.750000e-04

Joint ci ratio: 3.530160e-01	ci left: 2.026672e-03	ci right 2.912674e-03	k: 122	n:50000
Cons ci ratio: 1.254291e-01	ci left: 1.795699e-02	ci right 2.037929e-02	k: 957	n:50000
KS ci ratio: 1.730344e-01	ci left: 9.280380e-03	ci right 1.105718e-02	k: 507	n:50000
DUOX2   50000 perm   12 sec   (4317 perm/sec)   p_kst 1.014000e-02   p_cons 1.914000e-02   p_joint 2.440000e-03

Joint ci ratio: 8.613537e-02	ci left: 3.192761e-02	ci right 3.481775e-02	k: 2001	n:60000
Cons ci ratio: 1.040317e-01	ci left: 2.191278e-02	ci right 2.433365e-02	k: 1386	n:60000
KS ci ratio: 1.576451e-01	ci left: 9.395429e-03	ci right 1.101914e-02	k: 611	n:60000
DUOX2   60000 perm   14 sec   (4225 perm/sec)   p_kst 1.018333e-02   p_cons 2.310000e-02   p_joint 3.335000e-02

Joint ci ratio: 8.891819e-02	ci left: 2.581179e-02	ci right 2.822764e-02	k: 1890	n:70000
Cons ci ratio: 9.625895e-02	ci left: 2.202772e-02	ci right 2.426919e-02	k: 1619	n:70000
KS ci ratio: 1.456424e-01	ci left: 9.496411e-03	ci right 1.100174e-02	k: 716	n:70000
DUOX2   70000 perm   17 sec   (4142 perm/sec)   p_kst 1.022857e-02   p_cons 2.312857e-02   p_joint 2.700000e-02

Joint ci ratio: 1.060241e-01	ci left: 1.590854e-02	ci right 1.770175e-02	k: 1343	n:80000
Cons ci ratio: 9.895690e-02	ci left: 1.828469e-02	ci right 2.020040e-02	k: 1538	n:80000
KS ci ratio: 1.362721e-01	ci left: 9.539443e-03	ci right 1.094641e-02	k: 818	n:80000
DUOX2   80000 perm   20 sec   (4068 perm/sec)   p_kst 1.022500e-02   p_cons 1.922500e-02   p_joint 1.678750e-02

Joint ci ratio: 2.302164e-01	ci left: 2.841554e-03	ci right 3.591032e-03	k: 288	n:90000
Cons ci ratio: 9.317072e-02	ci left: 1.838943e-02	ci right 2.019730e-02	k: 1735	n:90000
KS ci ratio: 1.280145e-01	ci left: 9.650640e-03	ci right 1.098121e-02	k: 927	n:90000
DUOX2   90000 perm   23 sec   (3998 perm/sec)   p_kst 1.030000e-02   p_cons 1.927778e-02   p_joint 3.200000e-03

Joint ci ratio: 2.177610e-01	ci left: 2.878341e-03	ci right 3.590955e-03	k: 322	n:100000
Cons ci ratio: 8.799241e-02	ci left: 1.860302e-02	ci right 2.032501e-02	k: 1945	n:100000
KS ci ratio: 1.226597e-01	ci left: 9.489509e-03	ci right 1.073915e-02	k: 1010	n:100000
DUOX2   100000 perm   25 sec   (3933 perm/sec)   p_kst 1.010000e-02   p_cons 1.945000e-02   p_joint 3.220000e-03

Joint ci ratio: 2.209014e-01	ci left: 2.539299e-03	ci right 3.178269e-03	k: 313	n:110000
Cons ci ratio: 8.386954e-02	ci left: 1.865539e-02	ci right 2.029735e-02	k: 2141	n:110000
KS ci ratio: 1.173304e-01	ci left: 9.455717e-03	ci right 1.064306e-02	k: 1104	n:110000
DUOX2   110000 perm   28 sec   (3869 perm/sec)   p_kst 1.003636e-02   p_cons 1.946364e-02   p_joint 2.845455e-03

Joint ci ratio: 1.956723e-01	ci left: 3.007178e-03	ci right 3.667185e-03	k: 399	n:120000
Cons ci ratio: 8.052293e-02	ci left: 1.858624e-02	ci right 2.015377e-02	k: 2323	n:120000
KS ci ratio: 1.127354e-01	ci left: 9.412339e-03	ci right 1.054486e-02	k: 1196	n:120000
DUOX2   120000 perm   32 sec   (3809 perm/sec)   p_kst 9.966667e-03   p_cons 1.935833e-02   p_joint 3.325000e-03

Joint ci ratio: 1.876342e-01	ci left: 3.032177e-03	ci right 3.667219e-03	k: 434	n:130000
Cons ci ratio: 7.748435e-02	ci left: 1.855903e-02	ci right 2.006252e-02	k: 2509	n:130000
KS ci ratio: 1.085986e-01	ci left: 9.383891e-03	ci right 1.046891e-02	k: 1289	n:130000
DUOX2   130000 perm   35 sec   (3749 perm/sec)   p_kst 9.915385e-03   p_cons 1.930000e-02   p_joint 3.338462e-03

Joint ci ratio: 1.830697e-01	ci left: 2.965435e-03	ci right 3.569714e-03	k: 456	n:140000
Cons ci ratio: 7.503571e-02	ci left: 1.840343e-02	ci right 1.984515e-02	k: 2676	n:140000
KS ci ratio: 1.047713e-01	ci left: 9.381031e-03	ci right 1.042513e-02	k: 1385	n:140000
DUOX2   140000 perm   38 sec   (3674 perm/sec)   p_kst 9.892857e-03   p_cons 1.911429e-02   p_joint 3.257143e-03

Joint ci ratio: 1.757214e-01	ci left: 3.016074e-03	ci right 3.603384e-03	k: 495	n:150000
Cons ci ratio: 7.218684e-02	ci left: 1.858355e-02	ci right 1.998178e-02	k: 2891	n:150000
KS ci ratio: 1.015299e-01	ci left: 9.340140e-03	ci right 1.034561e-02	k: 1475	n:150000
DUOX2   150000 perm   41 sec   (3627 perm/sec)   p_kst 9.833333e-03   p_cons 1.927333e-02   p_joint 3.300000e-03

Joint ci ratio: 1.704759e-01	ci left: 3.012926e-03	ci right 3.580308e-03	k: 526	n:160000
Cons ci ratio: 6.984616e-02	ci left: 1.863148e-02	ci right 1.998602e-02	k: 3088	n:160000
KS ci ratio: 9.866737e-02	ci left: 9.286506e-03	ci right 1.025638e-02	k: 1562	n:160000
DUOX2   160000 perm   45 sec   (3582 perm/sec)   p_kst 9.762500e-03   p_cons 1.930000e-02   p_joint 3.287500e-03

Joint ci ratio: 1.653767e-01	ci left: 3.021657e-03	ci right 3.571968e-03	k: 559	n:170000
Cons ci ratio: 6.763542e-02	ci left: 1.872069e-02	ci right 2.003695e-02	k: 3293	n:170000
KS ci ratio: 9.568325e-02	ci left: 9.308446e-03	ci right 1.024956e-02	k: 1661	n:170000
DUOX2   170000 perm   48 sec   (3537 perm/sec)   p_kst 9.770588e-03   p_cons 1.937059e-02   p_joint 3.288235e-03

Joint ci ratio: 1.609819e-01	ci left: 3.018976e-03	ci right 3.552775e-03	k: 590	n:180000
Cons ci ratio: 6.578529e-02	ci left: 1.870767e-02	ci right 1.998565e-02	k: 3481	n:180000
KS ci ratio: 9.300783e-02	ci left: 9.317486e-03	ci right 1.023174e-02	k: 1758	n:180000
DUOX2   180000 perm   52 sec   (3493 perm/sec)   p_kst 9.766667e-03   p_cons 1.933889e-02   p_joint 3.277778e-03

Joint ci ratio: 6.753901e-02	ci left: 1.683233e-02	ci right 1.801404e-02	k: 3309	n:190000
Cons ci ratio: 6.414152e-02	ci left: 1.866020e-02	ci right 1.990190e-02	k: 3662	n:190000
KS ci ratio: 9.027520e-02	ci left: 9.382500e-03	ci right 1.027466e-02	k: 1866	n:190000
DUOX2   190000 perm   55 sec   (3449 perm/sec)   p_kst 9.821053e-03   p_cons 1.927368e-02   p_joint 1.741579e-02

Outputting figure to mutsig2_images.part000000000053/DUOX2.2_4779_190000_0.0098211_0.019274_0.017416.png
                gene_name: DUOX2
               theta_stop: 0.090 
                    nperm: 190000 
                     p_ks: 0.0098 
        ci_ks_bounds_left: 0.0094 
       ci_ks_bounds_right: 0.010 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.017 
    ci_joint_bounds_right: 0.018 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000053
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 53 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1553>
Subject: Job 9877068: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1553>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000054> was used as the working directory.
Started at Fri Oct  5 22:37:14 2012
Results reported at Fri Oct  5 22:38:59 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000054.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000054.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 54  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000054.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    147.26 sec.
    Max Memory :      1938 MB
    Max Swap   :      4685 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
54
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 54
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 54: processing genes 4807 - 4896
Calculating significance of each gene.
Using projection method.
4807	DYNLRB2	1
4808	DYNLT1	1
4809	DYNLT3	1
4810	DYRK1A	3.312401e-02
4811	DYRK1B	1
4812	DYRK2	1
4813	DYRK3	1
4814	DYRK4	1
4815	DYSF	1
4816	DYSFIP1	1
4817	DYTN	1
4818	DYX1C1	1
4819	DZIP1	1
4820	DZIP1L	1
4821	DZIP3	7.150670e-02
4822	E2F1	1
4823	E2F2	1
4824	E2F3	1
4825	E2F4	1
4826	E2F5	1
4827	E2F6	1
4828	E2F7	1
4829	E2F8	1
4830	E4F1	1
4831	EAF1	1
4832	EAF2	1
4833	EAPP	1
4834	EARS2	1
4835	EBAG9	1
4836	EBF1	1
4837	EBF2	9.154283e-02
4838	EBF3	1
4839	EBI3	1
4840	EBLN2	1
4841	EBNA1BP2	1
4842	EBP	1
4843	EBPL	1
4844	ECD	1
4845	ECE1	1
4846	ECE2	1
4847	ECEL1	1
4848	ECH1	1
4849	ECHDC1	1
4850	ECHDC2	1
4851	ECHDC3	1
4852	ECHS1	1
4853	ECM1	1
4854	ECM2	1
4855	ECSCR	1
4856	ECSIT	1.628895e-01
4857	ECT2	1
4858	ECT2L	1
4859	EDA	1
4860	EDA2R	1
4861	EDAR	1
4862	EDARADD	1
4863	EDC3	1
4864	EDC4	1
4865	EDDM3A	1
4866	EDDM3B	1
4867	EDEM1	1
4868	EDEM2	1
4869	EDEM3	1
4870	EDF1	1
4871	EDIL3	1
4872	EDN1	1
4873	EDN2	6.604008e-02
4874	EDN3	1
4875	EDNRA	1
4876	EDNRB	1
4877	EEA1	1
4878	EED	1.286242e-01
4879	EEF1A1	7.260397e-02
4880	EEF1A2	1
4881	EEF1B2	1
4882	EEF1D	1
4883	EEF1E1	5.737907e-02
4884	EEF1G	1
4885	EEF2	1
4886	EEF2K	1.288216e-01
4887	EEFSEC	1
4888	EEPD1	1
4889	EFCAB1	2.228995e-02
4890	EFCAB2	1
4891	EFCAB3	1
4892	EFCAB4A	1
4893	EFCAB4B	1
4894	EFCAB5	1
4895	EFCAB6	8.596016e-02
4896	EFCAB7	1.786122e-01
Done

Running MutSig 2:
Scatter job 54: processing genes 4807 - 4896
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
DYRK1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.718438e-02	ci left: 5.164573e-01	ci right 5.361274e-01	k: 5263	n:10000
KS ci ratio: 9.813094e-03	ci left: 9.363056e-01	ci right 9.456355e-01	k: 9411	n:10000
DYRK1A   10000 perm   2 sec   (5209 perm/sec)   p_kst 9.411000e-01   p_cons 5.263000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000054/DYRK1A.2_2420_10000_0.9411_0.5263_1.png
                gene_name: DYRK1A
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
EFCAB6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.024481e-02	ci left: 6.172347e-01	ci right 6.362914e-01	k: 6268	n:10000
Cons ci ratio: 5.626217e-02	ci left: 3.175092e-01	ci right 3.359918e-01	k: 3267	n:10000
KS ci ratio: 4.299881e-02	ci left: 4.440068e-01	ci right 4.636202e-01	k: 4538	n:10000
EFCAB6   10000 perm   2 sec   (4801 perm/sec)   p_kst 4.538000e-01   p_cons 3.267000e-01   p_joint 6.268000e-01

Outputting figure to mutsig2_images.part000000000054/EFCAB6.2_4626_10000_0.4538_0.3267_0.6268.png
                gene_name: EFCAB6
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000054
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 54 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1533>
Subject: Job 9877069: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1533>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000055> was used as the working directory.
Started at Fri Oct  5 22:37:14 2012
Results reported at Fri Oct  5 22:39:19 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000055.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000055.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 55  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000055.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    141.53 sec.
    Max Memory :      1541 MB
    Max Swap   :      4315 MB

    Max Processes  :         7
    Max Threads    :        55

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
55
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 55
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 55: processing genes 4897 - 4987
Calculating significance of each gene.
Using projection method.
4897	EFEMP1	1
4898	EFEMP2	7.572479e-02
4899	EFHA1	1
4900	EFHA2	1
4901	EFHB	8.838491e-02
In gene EFHC1 the following bins exceed PROBCAP:
    PRAD-EJ-5505	categ 6	N = 1967    n = 1	mu =   1.33e-07
4902	EFHC1	3.646691e-02
4903	EFHC2	1
4904	EFHD1	1
4905	EFHD2	1
4906	EFNA1	1
4907	EFNA2	1
4908	EFNA3	1
4909	EFNA4	1
4910	EFNA5	1
4911	EFNB1	1
4912	EFNB2	1
4913	EFNB3	1
4914	EFR3A	1
4915	EFS	1
4916	EFTUD1	1
4917	EFTUD2	1
4918	EGF	1
4919	EGFL6	1
4920	EGFL7	1
4921	EGFL8	1
4922	EGFLAM	1
4923	EGFR	1.001630e-01
4924	EGLN1	1
4925	EGLN2	1
4926	EGLN3	1
4927	EGR1	1
4928	EGR2	1.620398e-01
4929	EGR3	1
4930	EGR4	1
4931	EHBP1	1
4932	EHBP1L1	1
4933	EHD1	1
4934	EHD2	1
4935	EHD3	1
4936	EHD4	1
4937	EHF	1
4938	EHHADH	9.513821e-02
4939	EHMT1	1
4940	EHMT2	7.806032e-02
4941	EI24	1
4942	EID1	1
4943	EID2	1
4944	EID2B	1
4945	EID3	1
4946	EIF1	1
4947	EIF1AD	1
4948	EIF1AX	1
4949	EIF1AY	1
4950	EIF1B	1
4951	EIF2A	1
4952	EIF2AK1	1
4953	EIF2AK2	1
4954	EIF2AK3	2.818621e-01
4955	EIF2AK4	1
4956	EIF2B1	1
4957	EIF2B2	1
4958	EIF2B3	6.021848e-02
4959	EIF2B4	1
4960	EIF2B5	1
4961	EIF2C1	1
4962	EIF2C2	1
4963	EIF2C3	1
4964	EIF2C4	1
4965	EIF2S1	1
4966	EIF2S2	1
4967	EIF2S3	1
4968	EIF3A	1
4969	EIF3B	1
4970	EIF3D	1
4971	EIF3E	1
4972	EIF3F	1
4973	EIF3G	1
4974	EIF3H	1
4975	EIF3I	1
4976	EIF3J	1
4977	EIF3K	1
4978	EIF3L	1
4979	EIF3M	1
4980	EIF4A1	1
4981	EIF4A2	1
4982	EIF4A3	1
4983	EIF4B	1
4984	EIF4E	1
4985	EIF4E1B	1
4986	EIF4E2	1
4987	EIF4E3	1
Done

Running MutSig 2:
Scatter job 55: processing genes 4897 - 4987
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
EGFR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.032889e-02	ci left: 6.159285e-01	ci right 6.349984e-01	k: 6255	n:10000
Cons ci ratio: 7.049003e-02	ci left: 2.278041e-01	ci right 2.445498e-01	k: 2361	n:10000
KS ci ratio: 8.185320e-03	ci left: 9.541963e-01	ci right 9.621340e-01	k: 9583	n:10000
EGFR   10000 perm   2 sec   (4768 perm/sec)   p_kst 9.583000e-01   p_cons 2.361000e-01   p_joint 6.255000e-01

Outputting figure to mutsig2_images.part000000000055/EGFR.2_4009_10000_0.9583_0.2361_0.6255.png
                gene_name: EGFR
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.63 

Current progress: 50 percent done.
EHMT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.490568e-02	ci left: 7.034174e-01	ci right 7.212588e-01	k: 7124	n:10000
KS ci ratio: 6.856483e-03	ci left: 9.668882e-01	ci right 9.736342e-01	k: 9704	n:10000
EHMT2   10000 perm   2 sec   (5277 perm/sec)   p_kst 9.704000e-01   p_cons 7.124000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000055/EHMT2.2_3745_10000_0.9704_0.7124_1.png
                gene_name: EHMT2
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000055
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 55 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 9877074: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000056> was used as the working directory.
Started at Fri Oct  5 22:37:31 2012
Results reported at Fri Oct  5 22:39:03 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000056.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000056.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 56  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000056.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     85.31 sec.
    Max Memory :      2101 MB
    Max Swap   :      4697 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
56
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 56
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 56: processing genes 4988 - 5078
Calculating significance of each gene.
Using projection method.
4988	EIF4EBP1	1
4989	EIF4EBP2	1
4990	EIF4EBP3	1
4991	EIF4ENIF1	1
4992	EIF4G1	4.693240e-01
4993	EIF4G2	1
4994	EIF4G3	1
4995	EIF4H	1
4996	EIF5	1
4997	EIF5A	1
4998	EIF5A2	1
4999	EIF5AL1	1
5000/18134 5000	EIF5B	1.315980e-01
5001	EIF6	1
5002	ELAC1	1
5003	ELAC2	1
5004	ELANE	1
5005	ELAVL1	1
5006	ELAVL2	1
5007	ELAVL3	1
5008	ELAVL4	1
5009	ELF1	1
5010	ELF2	1
5011	ELF3	1
5012	ELF4	1
5013	ELF5	1
5014	ELFN2	1
5015	ELK1	1
5016	ELK3	1
5017	ELK4	1
5018	ELL	1
5019	ELL2	1
5020	ELL3	1
5021	ELMO1	1
5022	ELMO2	1
In gene ELMO3 the following bins exceed PROBCAP:
    PRAD-CH-5788	categ 6	N = 2223    n = 1	mu =   2.66e-07
5023	ELMO3	8.394473e-02
5024	ELMOD1	1
5025	ELMOD2	1
5026	ELMOD3	1
5027	ELN	1
5028	ELOF1	1
5029	ELOVL1	1
5030	ELOVL2	1
5031	ELOVL3	1
5032	ELOVL4	1
5033	ELOVL5	1
5034	ELOVL6	1
5035	ELOVL7	1
5036	ELP2	1
5037	ELP3	1
5038	ELP4	1
5039	ELSPBP1	1
5040	ELTD1	1
5041	EMB	1
5042	EMCN	1
5043	EMD	1
5044	EME1	1
5045	EME2	1
5046	EMG1	1
5047	EMID1	7.276506e-02
5048	EMID2	1
5049	EMILIN1	1
5050	EMILIN2	1
5051	EMILIN3	1
5052	EML1	1.316696e-01
5053	EML2	1
5054	EML3	1.304101e-01
5055	EML4	1.865196e-02
5056	EML5	9.815809e-02
5057	EMP1	1
5058	EMP2	1
5059	EMP3	1
5060	EMR1	1
5061	EMR2	3.754533e-02
5062	EMR3	1
5063	EMX1	1
5064	EMX2	1
5065	EN1	1
5066	EN2	1
5067	ENAH	1
In gene ENAM the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 3461    n = 1	mu =   9.08e-07
5068	ENAM	4.965792e-02
5069	ENC1	1
5070	ENDOD1	1
5071	ENDOG	1
5072	ENDOU	1
5073	ENG	1
5074	ENGASE	2.051308e-01
5075	ENHO	1
5076	ENKUR	1
5077	ENO1	1
5078	ENO2	1
Done

Running MutSig 2:
Scatter job 56: processing genes 4988 - 5078
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
EML4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.178519e-03	ci left: 9.435701e-01	ci right 9.523667e-01	k: 9481	n:10000
KS ci ratio: 3.318984e-02	ci left: 5.726613e-01	ci right 5.920907e-01	k: 5824	n:10000
EML4   10000 perm   2 sec   (6440 perm/sec)   p_kst 5.824000e-01   p_cons 9.481000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000056/EML4.2_3038_10000_0.5824_0.9481_1.png
                gene_name: EML4
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
EML5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.540304e-02	ci left: 5.408871e-01	ci right 5.604833e-01	k: 5507	n:10000
KS ci ratio: 1.686127e-02	ci left: 8.366363e-01	ci right 8.509628e-01	k: 8439	n:10000
EML5   10000 perm   2 sec   (5698 perm/sec)   p_kst 8.439000e-01   p_cons 5.507000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000056/EML5.2_6106_10000_0.8439_0.5507_1.png
                gene_name: EML5
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
EMR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.481661e-02	ci left: 1.684829e-01	ci right 1.835063e-01	k: 1759	n:10000
Cons ci ratio: 1.822799e-01	ci left: 4.015916e-02	ci right 4.830902e-02	k: 441	n:10000
KS ci ratio: 5.097653e-02	ci left: 3.620179e-01	ci right 3.810570e-01	k: 3715	n:10000
EMR2   10000 perm   1 sec   (6845 perm/sec)   p_kst 3.715000e-01   p_cons 4.410000e-02   p_joint 1.759000e-01

Joint ci ratio: 9.024730e-02	ci left: 8.229672e-02	ci right 9.012407e-02	k: 1723	n:20000
Cons ci ratio: 1.343100e-01	ci left: 3.810025e-02	ci right 4.363424e-02	k: 816	n:20000
KS ci ratio: 3.645435e-02	ci left: 3.596176e-01	ci right 3.730212e-01	k: 7326	n:20000
EMR2   20000 perm   3 sec   (6054 perm/sec)   p_kst 3.663000e-01   p_cons 4.080000e-02   p_joint 8.615000e-02

Joint ci ratio: 9.679586e-02	ci left: 4.931898e-02	ci right 5.436826e-02	k: 1554	n:30000
Cons ci ratio: 1.085836e-01	ci left: 3.936835e-02	ci right 4.392096e-02	k: 1248	n:30000
KS ci ratio: 2.979369e-02	ci left: 3.604127e-01	ci right 3.713466e-01	k: 10976	n:30000
EMR2   30000 perm   5 sec   (5716 perm/sec)   p_kst 3.658667e-01   p_cons 4.160000e-02   p_joint 5.180000e-02

Joint ci ratio: 9.055515e-02	ci left: 4.272000e-02	ci right 4.679643e-02	k: 1789	n:40000
Cons ci ratio: 9.352007e-02	ci left: 4.010395e-02	ci right 4.406287e-02	k: 1682	n:40000
KS ci ratio: 2.562233e-02	ci left: 3.643931e-01	ci right 3.738759e-01	k: 14765	n:40000
EMR2   40000 perm   7 sec   (5528 perm/sec)   p_kst 3.691250e-01   p_cons 4.205000e-02   p_joint 4.472500e-02

Outputting figure to mutsig2_images.part000000000056/EMR2.2_2552_40000_0.36912_0.04205_0.044725.png
                gene_name: EMR2
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.047 

Current progress: 75 percent done.
ENAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.601820e-01	ci left: 5.195823e-02	ci right 6.110226e-02	k: 564	n:10000
Cons ci ratio: 2.213733e-01	ci left: 2.702777e-02	ci right 3.384941e-02	k: 303	n:10000
KS ci ratio: 1.938006e-02	ci left: 7.956756e-01	ci right 8.113472e-01	k: 8036	n:10000
ENAM   10000 perm   2 sec   (6498 perm/sec)   p_kst 8.036000e-01   p_cons 3.030000e-02   p_joint 5.640000e-02

Joint ci ratio: 1.253735e-01	ci left: 4.367138e-02	ci right 4.956134e-02	k: 931	n:20000
Cons ci ratio: 1.625657e-01	ci left: 2.594951e-02	ci right 3.058899e-02	k: 564	n:20000
KS ci ratio: 1.367092e-02	ci left: 7.987830e-01	ci right 8.098283e-01	k: 16087	n:20000
ENAM   20000 perm   3 sec   (5825 perm/sec)   p_kst 8.043500e-01   p_cons 2.820000e-02   p_joint 4.655000e-02

Joint ci ratio: 1.128970e-01	ci left: 3.644823e-02	ci right 4.084169e-02	k: 1158	n:30000
Cons ci ratio: 1.339189e-01	ci left: 2.590436e-02	ci right 2.965451e-02	k: 832	n:30000
KS ci ratio: 1.102785e-02	ci left: 8.036311e-01	ci right 8.125758e-01	k: 24244	n:30000
ENAM   30000 perm   5 sec   (5562 perm/sec)   p_kst 8.081333e-01   p_cons 2.773333e-02   p_joint 3.860000e-02

Joint ci ratio: 1.063901e-01	ci left: 3.107601e-02	ci right 3.459224e-02	k: 1312	n:40000
Cons ci ratio: 1.247889e-01	ci left: 2.257075e-02	ci right 2.559888e-02	k: 962	n:40000
KS ci ratio: 9.492835e-03	ci left: 8.061206e-01	ci right 8.138344e-01	k: 32400	n:40000
ENAM   40000 perm   7 sec   (5380 perm/sec)   p_kst 8.100000e-01   p_cons 2.405000e-02   p_joint 3.280000e-02

Joint ci ratio: 9.537643e-02	ci left: 3.111920e-02	ci right 3.425536e-02	k: 1633	n:50000
Cons ci ratio: 1.119848e-01	ci left: 2.257892e-02	ci right 2.527675e-02	k: 1195	n:50000
KS ci ratio: 8.486215e-03	ci left: 8.066945e-01	ci right 8.135894e-01	k: 40508	n:50000
ENAM   50000 perm   10 sec   (5238 perm/sec)   p_kst 8.101600e-01   p_cons 2.390000e-02   p_joint 3.266000e-02

Joint ci ratio: 8.738491e-02	ci left: 3.103020e-02	ci right 3.388193e-02	k: 1946	n:60000
Cons ci ratio: 1.028239e-01	ci left: 2.243262e-02	ci right 2.488042e-02	k: 1418	n:60000
KS ci ratio: 7.738662e-03	ci left: 8.073241e-01	ci right 8.136125e-01	k: 48629	n:60000
ENAM   60000 perm   12 sec   (5118 perm/sec)   p_kst 8.104833e-01   p_cons 2.363333e-02   p_joint 3.243333e-02

Joint ci ratio: 8.940529e-02	ci left: 2.553228e-02	ci right 2.793574e-02	k: 1870	n:70000
Cons ci ratio: 9.527027e-02	ci left: 2.248811e-02	ci right 2.475161e-02	k: 1652	n:70000
KS ci ratio: 7.174537e-03	ci left: 8.071314e-01	ci right 8.129572e-01	k: 56704	n:70000
ENAM   70000 perm   14 sec   (5019 perm/sec)   p_kst 8.100571e-01   p_cons 2.360000e-02   p_joint 2.671429e-02

Outputting figure to mutsig2_images.part000000000056/ENAM.2_3461_70000_0.81006_0.0236_0.026714.png
                gene_name: ENAM
               theta_stop: 0.095 
                    nperm: 70000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.025 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.028 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000056
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 56 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1538>
Subject: Job 9877088: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1538>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000057> was used as the working directory.
Started at Fri Oct  5 22:38:13 2012
Results reported at Fri Oct  5 22:40:37 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000057.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000057.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 57  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000057.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    179.64 sec.
    Max Memory :      2138 MB
    Max Swap   :      4683 MB

    Max Processes  :         7
    Max Threads    :        60

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
57
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 57
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 57: processing genes 5079 - 5168
Calculating significance of each gene.
Using projection method.
5079	ENO3	1
5080	ENOPH1	1
5081	ENOSF1	1
5082	ENOX1	1.517717e-01
5083	ENOX2	1
5084	ENPEP	2.838468e-01
5085	ENPP1	1
5086	ENPP2	8.459855e-02
5087	ENPP3	1.010414e-01
5088	ENPP4	1
5089	ENPP5	1
5090	ENPP6	1
5091	ENPP7	1.775945e-02
5092	ENSA	1
5093	ENTHD1	1
5094	ENTPD1	1
5095	ENTPD2	1
5096	ENTPD3	1
5097	ENTPD4	1
5098	ENTPD5	1
5099	ENTPD6	1.261580e-01
5100	ENTPD7	1
In gene ENTPD8 the following bins exceed PROBCAP:
    PRAD-CH-5765	categ 6	N = 1475    n = 1	mu =   3.34e-07
5101	ENTPD8	5.965293e-02
5102	ENY2	1
5103	EOMES	4.048118e-02
5104	EP300	1
5105	EP400	1
5106	EPAS1	1
5107	EPB41	1
5108	EPB41L1	1
5109	EPB41L2	1
5110	EPB41L3	7.051409e-02
5111	EPB41L4A	1.371321e-02
5112	EPB41L4B	1
5113	EPB41L5	1
5114	EPB42	1
5115	EPB49	1
5116	EPC1	1
5117	EPC2	2.110460e-01
5118	EPCAM	1
5119	EPDR1	1
5120	EPGN	1
5121	EPHA1	1
5122	EPHA10	1.666618e-01
5123	EPHA2	1
5124	EPHA3	2.366853e-01
5125	EPHA4	1
5126	EPHA5	2.261025e-01
5127	EPHA6	1
5128	EPHA7	1
5129	EPHA8	1
5130	EPHB1	1
5131	EPHB2	2.768301e-01
5132	EPHB3	1
5133	EPHB4	1
5134	EPHB6	2.603569e-01
5135	EPHX1	1
5136	EPHX2	1
5137	EPHX3	1
5138	EPHX4	1
5139	EPM2A	1
5140	EPM2AIP1	1
5141	EPN1	1
5142	EPN2	4.092865e-02
5143	EPN3	1
5144	EPO	1
5145	EPOR	1
5146	EPPK1	3.592110e-02
5147	EPRS	1
5148	EPS15	1.017167e-01
5149	EPS15L1	1
5150	EPS8	1
5151	EPS8L1	1
5152	EPS8L2	1
5153	EPS8L3	1
5154	EPSTI1	1
5155	EPT1	1
5156	EPX	4.829683e-02
5157	EPYC	1
5158	ERAL1	1
5159	ERAP1	1
5160	ERAP2	1
5161	ERAS	1
5162	ERBB2	3.745696e-01
5163	ERBB2IP	1
5164	ERBB3	3.077688e-01
5165	ERBB4	1
5166	ERC1	1
5167	ERC2	1
5168	ERCC1	1
Done

Running MutSig 2:
Scatter job 57: processing genes 5079 - 5168
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
EPPK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.363748e-02	ci left: 4.367232e-01	ci right 4.563080e-01	k: 4465	n:10000
Cons ci ratio: 7.693422e-02	ci left: 1.981098e-01	ci right 2.140618e-01	k: 2060	n:10000
KS ci ratio: 2.078848e-02	ci left: 7.722565e-01	ci right 7.885799e-01	k: 7805	n:10000
EPPK1   10000 perm   3 sec   (3383 perm/sec)   p_kst 7.805000e-01   p_cons 2.060000e-01   p_joint 4.465000e-01

Outputting figure to mutsig2_images.part000000000057/EPPK1.3_7267_10000_0.7805_0.206_0.4465.png
                gene_name: EPPK1
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 25 percent done.
ENPP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.405052e-02	ci left: 8.798130e-01	ci right 8.923611e-01	k: 8862	n:10000
KS ci ratio: 5.472561e-02	ci left: 3.297201e-01	ci right 3.483737e-01	k: 3390	n:10000
ENPP7   10000 perm   2 sec   (6349 perm/sec)   p_kst 3.390000e-01   p_cons 8.862000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000057/ENPP7.2_1397_10000_0.339_0.8862_1.png
                gene_name: ENPP7
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
EPB41L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.319059e-03	ci left: 9.857766e-01	ci right 9.901322e-01	k: 9881	n:10000
Cons ci ratio: 2.019906e-02	ci left: 7.820857e-01	ci right 7.981449e-01	k: 7902	n:10000
KS ci ratio: 1.551522e-02	ci left: 8.577378e-01	ci right 8.712491e-01	k: 8646	n:10000
EPB41L3   10000 perm   2 sec   (5101 perm/sec)   p_kst 8.646000e-01   p_cons 7.902000e-01   p_joint 9.881000e-01

Outputting figure to mutsig2_images.part000000000057/EPB41L3.2_3348_10000_0.8646_0.7902_0.9881.png
                gene_name: EPB41L3
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 75 percent done.
EPB41L4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.296881e-01	ci left: 2.504340e-02	ci right 3.163520e-02	k: 282	n:10000
Cons ci ratio: 2.682907e-01	ci left: 1.809309e-02	ci right 2.379077e-02	k: 208	n:10000
KS ci ratio: 4.151183e-02	ci left: 4.614759e-01	ci right 4.811408e-01	k: 4713	n:10000
EPB41L4A   10000 perm   2 sec   (5800 perm/sec)   p_kst 4.713000e-01   p_cons 2.080000e-02   p_joint 2.820000e-02

Joint ci ratio: 1.498089e-01	ci left: 3.061553e-02	ci right 3.562141e-02	k: 661	n:20000
Cons ci ratio: 1.965473e-01	ci left: 1.758116e-02	ci right 2.146030e-02	k: 389	n:20000
KS ci ratio: 2.908611e-02	ci left: 4.689575e-01	ci right 4.828495e-01	k: 9518	n:20000
EPB41L4A   20000 perm   4 sec   (5166 perm/sec)   p_kst 4.759000e-01   p_cons 1.945000e-02   p_joint 3.305000e-02

Joint ci ratio: 1.200257e-01	ci left: 3.226906e-02	ci right 3.642175e-02	k: 1029	n:30000
Cons ci ratio: 1.618985e-01	ci left: 1.761317e-02	ci right 2.074760e-02	k: 574	n:30000
KS ci ratio: 2.367805e-02	ci left: 4.717336e-01	ci right 4.830708e-01	k: 14322	n:30000
EPB41L4A   30000 perm   6 sec   (4919 perm/sec)   p_kst 4.774000e-01   p_cons 1.913333e-02   p_joint 3.430000e-02

Joint ci ratio: 1.255930e-01	ci left: 2.227994e-02	ci right 2.528974e-02	k: 950	n:40000
Cons ci ratio: 1.394381e-01	ci left: 1.802253e-02	ci right 2.074787e-02	k: 774	n:40000
KS ci ratio: 2.044657e-02	ci left: 4.739437e-01	ci right 4.837594e-01	k: 19154	n:40000
EPB41L4A   40000 perm   8 sec   (4758 perm/sec)   p_kst 4.788500e-01   p_cons 1.935000e-02   p_joint 2.375000e-02

Joint ci ratio: 2.201680e-01	ci left: 5.606360e-03	ci right 7.011884e-03	k: 314	n:50000
Cons ci ratio: 1.559418e-01	ci left: 1.150609e-02	ci right 1.347112e-02	k: 623	n:50000
KS ci ratio: 1.821974e-02	ci left: 4.763319e-01	ci right 4.851104e-01	k: 24036	n:50000
EPB41L4A   50000 perm   11 sec   (4639 perm/sec)   p_kst 4.807200e-01   p_cons 1.246000e-02   p_joint 6.280000e-03

Joint ci ratio: 1.671486e-01	ci left: 8.323718e-03	ci right 9.857664e-03	k: 544	n:60000
Cons ci ratio: 1.420479e-01	ci left: 1.164240e-02	ci right 1.343855e-02	k: 751	n:60000
KS ci ratio: 1.663913e-02	ci left: 4.765116e-01	ci right 4.845236e-01	k: 28831	n:60000
EPB41L4A   60000 perm   13 sec   (4535 perm/sec)   p_kst 4.805167e-01   p_cons 1.251667e-02   p_joint 9.066667e-03

Joint ci ratio: 1.497034e-01	ci left: 8.973428e-03	ci right 1.043907e-02	k: 678	n:70000
Cons ci ratio: 1.299694e-01	ci left: 1.199419e-02	ci right 1.367512e-02	k: 897	n:70000
KS ci ratio: 1.539572e-02	ci left: 4.771067e-01	ci right 4.845234e-01	k: 33657	n:70000
EPB41L4A   70000 perm   16 sec   (4432 perm/sec)   p_kst 4.808143e-01   p_cons 1.281429e-02   p_joint 9.685714e-03

Joint ci ratio: 1.470882e-01	ci left: 8.152388e-03	ci right 9.458607e-03	k: 703	n:80000
Cons ci ratio: 1.202927e-01	ci left: 1.231141e-02	ci right 1.389919e-02	k: 1047	n:80000
KS ci ratio: 1.438597e-02	ci left: 4.778821e-01	ci right 4.848192e-01	k: 38508	n:80000
EPB41L4A   80000 perm   18 sec   (4330 perm/sec)   p_kst 4.813500e-01   p_cons 1.308750e-02   p_joint 8.787500e-03

Joint ci ratio: 6.380100e-02	ci left: 3.896974e-02	ci right 4.154889e-02	k: 3622	n:90000
Cons ci ratio: 9.136265e-02	ci left: 1.912788e-02	ci right 2.096991e-02	k: 1803	n:90000
KS ci ratio: 1.355797e-02	ci left: 4.782751e-01	ci right 4.848149e-01	k: 43339	n:90000
EPB41L4A   90000 perm   21 sec   (4244 perm/sec)   p_kst 4.815444e-01   p_cons 2.003333e-02   p_joint 4.024444e-02

Outputting figure to mutsig2_images.part000000000057/EPB41L4A.2_2153_90000_0.48154_0.020033_0.040244.png
                gene_name: EPB41L4A
               theta_stop: 0.091 
                    nperm: 90000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.042 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000057
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 57 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1553>
Subject: Job 9877102: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1553>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000058> was used as the working directory.
Started at Fri Oct  5 22:38:16 2012
Results reported at Fri Oct  5 23:27:51 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000058.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000058.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 58  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000058.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   3278.95 sec.
    Max Memory :      2301 MB
    Max Swap   :      4630 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
58
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 58
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 58: processing genes 5169 - 5259
Calculating significance of each gene.
Using projection method.
5169	ERCC2	2.002995e-02
5170	ERCC3	1.523892e-01
5171	ERCC4	1
5172	ERCC5	2.070882e-01
In gene ERCC6 the following bins exceed PROBCAP:
    PRAD-EJ-5542	categ 6	N = 4562    n = 1	mu =   1.32e-07
    PRAD-G9-6494	categ 6	N = 4562    n = 1	mu =   2.35e-07
5173	ERCC6	2.260555e-02
5174	ERCC6L	1
5175	ERCC8	1
5176	EREG	1
5177	ERF	1
5178	ERG	1
5179	ERGIC1	1
5180	ERGIC2	1
5181	ERGIC3	1
5182	ERH	1
5183	ERI1	1
5184	ERI2	1
5185	ERI3	1
5186	ERICH1	1
5187	ERLEC1	1
5188	ERLIN1	1
5189	ERLIN2	1
5190	ERMAP	5.949462e-02
5191	ERMN	1
5192	ERMP1	1.839940e-01
5193	ERN1	1
5194	ERN2	1
5195	ERO1L	1
5196	ERO1LB	1
5197	ERP27	1
5198	ERP29	1
5199	ERP44	1
5200	ERRFI1	1
5201	ERV3	1
5202	ERVFRDE1	1
5203	ESAM	1
In gene ESCO1 the following bins exceed PROBCAP:
    PRAD-CH-5765	categ 6	N = 2559    n = 1	mu =   3.34e-07
    PRAD-EJ-5508	categ 6	N = 2559    n = 1	mu =   2.32e-07
5204	ESCO1	1.058043e-03
5205	ESCO2	1
5206	ESD	1
5207	ESF1	1
5208	ESM1	1
5209	ESPL1	1
5210	ESPN	1.881238e-01
5211	ESPNL	1
5212	ESR1	1
5213	ESR2	1
In gene ESRP1 the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 2073    n = 1	mu =   6.75e-07
5214	ESRP1	1.817085e-01
5215	ESRP2	1
5216	ESRRA	1
5217	ESRRB	1
5218	ESRRG	1
5219	ESX1	1
5220	ESYT1	1
5221	ESYT2	2.593421e-01
5222	ESYT3	1
5223	ETAA1	1
5224	ETF1	1
5225	ETFA	6.091747e-02
5226	ETFB	1
5227	ETFDH	1
5228	ETHE1	1
5229	ETNK1	1
5230	ETNK2	1
5231	ETS1	1
5232	ETS2	1
5233	ETV1	1
5234	ETV2	1
5235	ETV3	6.270310e-04
5236	ETV3L	3.932023e-03
5237	ETV4	1
5238	ETV5	2.771902e-02
5239	ETV6	1
5240	ETV7	1
5241	EVC	1
5242	EVC2	1
5243	EVI2A	1
5244	EVI2B	1
5245	EVI5	1
5246	EVI5L	1
5247	EVL	1
5248	EVPL	4.902329e-01
5249	EVPLL	1
5250	EVX1	9.640861e-02
5251	EVX2	1
5252	EWSR1	1
5253	EXD1	1
5254	EXD2	1
5255	EXD3	1.232766e-02
5256	EXO1	1
5257	EXOC1	1
5258	EXOC2	7.031470e-03
5259	EXOC3	1
Done

Running MutSig 2:
Scatter job 58: processing genes 5169 - 5259
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ESCO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.283710e-02	ci left: 8.972367e-01	ci right 9.089273e-01	k: 9032	n:10000
KS ci ratio: 1.839213e-02	ci left: 8.119208e-01	ci right 8.270926e-01	k: 8196	n:10000
ESCO1   10000 perm   2 sec   (4967 perm/sec)   p_kst 8.196000e-01   p_cons 9.032000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000058/ESCO1.3_2559_10000_0.8196_0.9032_1.png
                gene_name: ESCO1
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 14 percent done.
ERCC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.646584e-02	ci left: 4.060162e-01	ci right 4.254329e-01	k: 4157	n:10000
Cons ci ratio: 3.391837e-02	ci left: 5.620320e-01	ci right 5.815262e-01	k: 5718	n:10000
KS ci ratio: 1.710413e-01	ci left: 4.561810e-02	ci right 5.424649e-02	k: 498	n:10000
ERCC2   10000 perm   2 sec   (5554 perm/sec)   p_kst 4.980000e-02   p_cons 5.718000e-01   p_joint 4.157000e-01

Joint ci ratio: 3.880932e-02	ci left: 3.311944e-01	ci right 3.443528e-01	k: 6755	n:20000
Cons ci ratio: 2.375838e-02	ci left: 5.695663e-01	ci right 5.833115e-01	k: 11529	n:20000
KS ci ratio: 1.211389e-01	ci left: 4.672873e-02	ci right 5.280302e-02	k: 994	n:20000
ERCC2   20000 perm   4 sec   (4905 perm/sec)   p_kst 4.970000e-02   p_cons 5.764500e-01   p_joint 3.377500e-01

Joint ci ratio: 4.188309e-02	ci left: 2.212442e-01	ci right 2.307422e-01	k: 6779	n:30000
Cons ci ratio: 1.854133e-02	ci left: 5.927933e-01	ci right 6.039209e-01	k: 17951	n:30000
KS ci ratio: 9.840823e-02	ci left: 4.775609e-02	ci right 5.273147e-02	k: 1506	n:30000
ERCC2   30000 perm   6 sec   (4698 perm/sec)   p_kst 5.020000e-02   p_cons 5.983667e-01   p_joint 2.259667e-01

Outputting figure to mutsig2_images.part000000000058/ERCC2.2_2432_30000_0.0502_0.59837_0.22597.png
                gene_name: ERCC2
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 29 percent done.
ERCC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.585304e-03	ci left: 9.898317e-01	ci right 9.934731e-01	k: 9918	n:10000
Cons ci ratio: 9.866011e-03	ci left: 9.356838e-01	ci right 9.450576e-01	k: 9405	n:10000
KS ci ratio: 5.541190e-03	ci left: 9.775957e-01	ci right 9.831195e-01	k: 9805	n:10000
ERCC6   10000 perm   2 sec   (4702 perm/sec)   p_kst 9.805000e-01   p_cons 9.405000e-01   p_joint 9.918000e-01

Outputting figure to mutsig2_images.part000000000058/ERCC6.2_4562_10000_0.9805_0.9405_0.9918.png
                gene_name: ERCC6
               theta_stop: 0.0099 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 43 percent done.
ETV3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.238931e+00	ci left: 4.116173e-04	ci right 1.707790e-03	k: 9	n:10000
Cons ci ratio: 4.485854e-02	ci left: 4.231596e-01	ci right 4.426795e-01	k: 4329	n:10000
KS ci ratio: 1.599773e+00	ci left: 1.623679e-04	ci right 1.166444e-03	k: 5	n:10000
ETV3   10000 perm   2 sec   (6193 perm/sec)   p_kst 5.000000e-04   p_cons 4.329000e-01   p_joint 9.000000e-04

Joint ci ratio: 9.795835e-01	ci left: 4.198281e-04	ci right 1.236710e-03	k: 15	n:20000
Cons ci ratio: 3.276484e-02	ci left: 4.102539e-01	ci right 4.239703e-01	k: 8342	n:20000
KS ci ratio: 1.011735e+00	ci left: 3.827477e-04	ci right 1.174202e-03	k: 14	n:20000
ETV3   20000 perm   4 sec   (5380 perm/sec)   p_kst 7.000000e-04   p_cons 4.171000e-01   p_joint 7.500000e-04

Joint ci ratio: 8.551005e-01	ci left: 4.072634e-04	ci right 1.029426e-03	k: 20	n:30000
Cons ci ratio: 2.580042e-02	ci left: 4.292135e-01	ci right 4.404658e-01	k: 13045	n:30000
KS ci ratio: 8.990099e-01	ci left: 3.556356e-04	ci right 9.480936e-04	k: 18	n:30000
ETV3   30000 perm   6 sec   (5118 perm/sec)   p_kst 6.000000e-04   p_cons 4.348333e-01   p_joint 6.666667e-04

Joint ci ratio: 6.045440e-01	ci left: 7.356550e-04	ci right 1.390274e-03	k: 41	n:40000
Cons ci ratio: 2.310985e-02	ci left: 4.135094e-01	ci right 4.232024e-01	k: 16734	n:40000
KS ci ratio: 7.541403e-01	ci left: 4.246441e-04	ci right 9.522566e-04	k: 26	n:40000
ETV3   40000 perm   8 sec   (4950 perm/sec)   p_kst 6.500000e-04   p_cons 4.183500e-01   p_joint 1.025000e-03

Joint ci ratio: 5.235334e-01	ci left: 8.287747e-04	ci right 1.431564e-03	k: 55	n:50000
Cons ci ratio: 2.074050e-02	ci left: 4.123736e-01	ci right 4.210361e-01	k: 20835	n:50000
KS ci ratio: 6.441991e-01	ci left: 5.043285e-04	ci right 9.966455e-04	k: 36	n:50000
ETV3   50000 perm   10 sec   (4803 perm/sec)   p_kst 7.200000e-04   p_cons 4.167000e-01   p_joint 1.100000e-03

Joint ci ratio: 4.975791e-01	ci left: 7.777559e-04	ci right 1.305762e-03	k: 61	n:60000
Cons ci ratio: 1.890563e-02	ci left: 4.134666e-01	ci right 4.213747e-01	k: 25045	n:60000
KS ci ratio: 6.046524e-01	ci left: 4.904150e-04	ci right 9.269059e-04	k: 41	n:60000
ETV3   60000 perm   13 sec   (4677 perm/sec)   p_kst 6.833333e-04   p_cons 4.174167e-01   p_joint 1.016667e-03

Joint ci ratio: 5.777784e-01	ci left: 4.689419e-04	ci right 8.601000e-04	k: 45	n:70000
Cons ci ratio: 1.745207e-02	ci left: 4.151843e-01	ci right 4.225082e-01	k: 29319	n:70000
KS ci ratio: 5.777784e-01	ci left: 4.689419e-04	ci right 8.601000e-04	k: 45	n:70000
ETV3   70000 perm   15 sec   (4566 perm/sec)   p_kst 6.428571e-04   p_cons 4.188429e-01   p_joint 6.428571e-04

Joint ci ratio: 5.487314e-01	ci left: 4.639215e-04	ci right 8.239026e-04	k: 50	n:80000
Cons ci ratio: 1.634528e-02	ci left: 4.148161e-01	ci right 4.216648e-01	k: 33459	n:80000
KS ci ratio: 5.487314e-01	ci left: 4.639215e-04	ci right 8.239026e-04	k: 50	n:80000
ETV3   80000 perm   18 sec   (4470 perm/sec)   p_kst 6.250000e-04   p_cons 4.182375e-01   p_joint 6.250000e-04

Joint ci ratio: 4.976662e-01	ci left: 5.184847e-04	ci right 8.705499e-04	k: 61	n:90000
Cons ci ratio: 1.544519e-02	ci left: 4.139202e-01	ci right 4.203741e-01	k: 37543	n:90000
KS ci ratio: 4.976662e-01	ci left: 5.184847e-04	ci right 8.705499e-04	k: 61	n:90000
ETV3   90000 perm   21 sec   (4378 perm/sec)   p_kst 6.777778e-04   p_cons 4.171444e-01   p_joint 6.777778e-04

Joint ci ratio: 4.860557e-01	ci left: 4.929118e-04	ci right 8.171933e-04	k: 64	n:100000
Cons ci ratio: 1.464312e-02	ci left: 4.144010e-01	ci right 4.205238e-01	k: 41746	n:100000
KS ci ratio: 4.860557e-01	ci left: 4.929118e-04	ci right 8.171933e-04	k: 64	n:100000
ETV3   100000 perm   23 sec   (4285 perm/sec)   p_kst 6.400000e-04   p_cons 4.174600e-01   p_joint 6.400000e-04

Joint ci ratio: 4.618231e-01	ci left: 5.041387e-04	ci right 8.140844e-04	k: 71	n:110000
Cons ci ratio: 1.397072e-02	ci left: 4.142292e-01	ci right 4.200661e-01	k: 45886	n:110000
KS ci ratio: 4.618231e-01	ci left: 5.041387e-04	ci right 8.140844e-04	k: 71	n:110000
ETV3   110000 perm   26 sec   (4205 perm/sec)   p_kst 6.454545e-04   p_cons 4.171455e-01   p_joint 6.454545e-04

Joint ci ratio: 4.408874e-01	ci left: 5.138309e-04	ci right 8.111640e-04	k: 78	n:120000
Cons ci ratio: 1.338272e-02	ci left: 4.141083e-01	ci right 4.196958e-01	k: 50028	n:120000
KS ci ratio: 4.408874e-01	ci left: 5.138309e-04	ci right 8.111640e-04	k: 78	n:120000
ETV3   120000 perm   29 sec   (4124 perm/sec)   p_kst 6.500000e-04   p_cons 4.169000e-01   p_joint 6.500000e-04

Joint ci ratio: 4.250430e-01	ci left: 5.154293e-04	ci right 7.999209e-04	k: 84	n:130000
Cons ci ratio: 1.285100e-02	ci left: 4.144715e-01	ci right 4.198399e-01	k: 54230	n:130000
KS ci ratio: 4.250430e-01	ci left: 5.154293e-04	ci right 7.999209e-04	k: 84	n:130000
ETV3   130000 perm   32 sec   (4044 perm/sec)   p_kst 6.461538e-04   p_cons 4.171538e-01   p_joint 6.461538e-04

Joint ci ratio: 3.999447e-01	ci left: 5.490384e-04	ci right 8.294558e-04	k: 95	n:140000
Cons ci ratio: 1.237801e-02	ci left: 4.147865e-01	ci right 4.199598e-01	k: 58432	n:140000
KS ci ratio: 3.999447e-01	ci left: 5.490384e-04	ci right 8.294558e-04	k: 95	n:140000
ETV3   140000 perm   35 sec   (3973 perm/sec)   p_kst 6.785714e-04   p_cons 4.173714e-01   p_joint 6.785714e-04

Joint ci ratio: 3.938435e-01	ci left: 5.304384e-04	ci right 7.961472e-04	k: 98	n:150000
Cons ci ratio: 1.196843e-02	ci left: 4.144631e-01	ci right 4.194601e-01	k: 62544	n:150000
KS ci ratio: 3.938435e-01	ci left: 5.304384e-04	ci right 7.961472e-04	k: 98	n:150000
ETV3   150000 perm   38 sec   (3906 perm/sec)   p_kst 6.533333e-04   p_cons 4.169600e-01   p_joint 6.533333e-04

Joint ci ratio: 3.770737e-01	ci left: 5.480881e-04	ci right 8.080596e-04	k: 107	n:160000
Cons ci ratio: 1.159787e-02	ci left: 4.141453e-01	ci right 4.189827e-01	k: 66650	n:160000
KS ci ratio: 3.770737e-01	ci left: 5.480881e-04	ci right 8.080596e-04	k: 107	n:160000
ETV3   160000 perm   42 sec   (3823 perm/sec)   p_kst 6.687500e-04   p_cons 4.165625e-01   p_joint 6.687500e-04

Joint ci ratio: 4.063727e-01	ci left: 4.362862e-04	ci right 6.636642e-04	k: 92	n:170000
Cons ci ratio: 1.124134e-02	ci left: 4.146605e-01	ci right 4.193541e-01	k: 70891	n:170000
KS ci ratio: 3.592190e-01	ci left: 5.745722e-04	ci right 8.311873e-04	k: 118	n:170000
ETV3   170000 perm   45 sec   (3760 perm/sec)   p_kst 6.941176e-04   p_cons 4.170059e-01   p_joint 5.411765e-04

Joint ci ratio: 3.547788e-01	ci left: 5.578225e-04	ci right 8.031672e-04	k: 121	n:180000
Cons ci ratio: 1.092987e-02	ci left: 4.144932e-01	ci right 4.190539e-01	k: 75019	n:180000
KS ci ratio: 3.547788e-01	ci left: 5.578225e-04	ci right 8.031672e-04	k: 121	n:180000
ETV3   180000 perm   49 sec   (3699 perm/sec)   p_kst 6.722222e-04   p_cons 4.167722e-01   p_joint 6.722222e-04

Joint ci ratio: 3.477266e-01	ci left: 5.524574e-04	ci right 7.895240e-04	k: 126	n:190000
Cons ci ratio: 1.064156e-02	ci left: 4.144082e-01	ci right 4.188470e-01	k: 79159	n:190000
KS ci ratio: 3.477266e-01	ci left: 5.524574e-04	ci right 7.895240e-04	k: 126	n:190000
ETV3   190000 perm   52 sec   (3641 perm/sec)   p_kst 6.631579e-04   p_cons 4.166263e-01   p_joint 6.631579e-04

Joint ci ratio: 3.397932e-01	ci left: 5.522449e-04	ci right 7.826278e-04	k: 132	n:200000
Cons ci ratio: 1.037523e-02	ci left: 4.143182e-01	ci right 4.186442e-01	k: 83296	n:200000
KS ci ratio: 3.397932e-01	ci left: 5.522449e-04	ci right 7.826278e-04	k: 132	n:200000
ETV3   200000 perm   56 sec   (3585 perm/sec)   p_kst 6.600000e-04   p_cons 4.164800e-01   p_joint 6.600000e-04

Joint ci ratio: 3.311892e-01	ci left: 5.564737e-04	ci right 7.814902e-04	k: 139	n:210000
Cons ci ratio: 1.012567e-02	ci left: 4.143475e-01	ci right 4.185691e-01	k: 87456	n:210000
KS ci ratio: 3.311892e-01	ci left: 5.564737e-04	ci right 7.814902e-04	k: 139	n:210000
ETV3   210000 perm   60 sec   (3522 perm/sec)   p_kst 6.619048e-04   p_cons 4.164571e-01   p_joint 6.619048e-04

Joint ci ratio: 3.254302e-01	ci left: 5.520335e-04	ci right 7.705622e-04	k: 144	n:220000
Cons ci ratio: 9.892923e-03	ci left: 4.143934e-01	ci right 4.185179e-01	k: 91620	n:220000
KS ci ratio: 3.254302e-01	ci left: 5.520335e-04	ci right 7.705622e-04	k: 144	n:220000
ETV3   220000 perm   64 sec   (3461 perm/sec)   p_kst 6.545455e-04   p_cons 4.164545e-01   p_joint 6.545455e-04

Joint ci ratio: 3.168071e-01	ci left: 5.600121e-04	ci right 7.746352e-04	k: 152	n:230000
Cons ci ratio: 9.674395e-03	ci left: 4.144929e-01	ci right 4.185266e-01	k: 95797	n:230000
KS ci ratio: 3.168071e-01	ci left: 5.600121e-04	ci right 7.746352e-04	k: 152	n:230000
ETV3   230000 perm   67 sec   (3409 perm/sec)   p_kst 6.608696e-04   p_cons 4.165087e-01   p_joint 6.608696e-04

Joint ci ratio: 3.127471e-01	ci left: 5.520281e-04	ci right 7.603384e-04	k: 156	n:240000
Cons ci ratio: 9.468763e-03	ci left: 4.146349e-01	ci right 4.185838e-01	k: 99986	n:240000
KS ci ratio: 3.127471e-01	ci left: 5.520281e-04	ci right 7.603384e-04	k: 156	n:240000
ETV3   240000 perm   71 sec   (3358 perm/sec)   p_kst 6.500000e-04   p_cons 4.166083e-01   p_joint 6.500000e-04

Joint ci ratio: 3.450470e-01	ci left: 4.271666e-04	ci right 6.087402e-04	k: 128	n:250000
Cons ci ratio: 9.269682e-03	ci left: 4.150822e-01	ci right 4.189517e-01	k: 104254	n:250000
KS ci ratio: 3.069374e-01	ci left: 5.520812e-04	ci right 7.557850e-04	k: 162	n:250000
ETV3   250000 perm   76 sec   (3311 perm/sec)   p_kst 6.480000e-04   p_cons 4.170160e-01   p_joint 5.120000e-04

Joint ci ratio: 3.385485e-01	ci left: 4.283175e-04	ci right 6.062022e-04	k: 133	n:260000
Cons ci ratio: 9.087816e-03	ci left: 4.152191e-01	ci right 4.190135e-01	k: 108450	n:260000
KS ci ratio: 3.023363e-01	ci left: 5.486082e-04	ci right 7.474127e-04	k: 167	n:260000
ETV3   260000 perm   80 sec   (3264 perm/sec)   p_kst 6.423077e-04   p_cons 4.171154e-01   p_joint 5.115385e-04

Joint ci ratio: 3.324038e-01	ci left: 4.294127e-04	ci right 6.038229e-04	k: 138	n:270000
Cons ci ratio: 8.919918e-03	ci left: 4.151466e-01	ci right 4.188700e-01	k: 112592	n:270000
KS ci ratio: 2.979360e-01	ci left: 5.454135e-04	ci right 7.396398e-04	k: 172	n:270000
ETV3   270000 perm   84 sec   (3218 perm/sec)   p_kst 6.370370e-04   p_cons 4.170074e-01   p_joint 5.111111e-04

Joint ci ratio: 3.277226e-01	ci left: 4.271785e-04	ci right 5.977232e-04	k: 142	n:280000
Cons ci ratio: 8.762088e-03	ci left: 4.150193e-01	ci right 4.186753e-01	k: 116717	n:280000
KS ci ratio: 2.937225e-01	ci left: 5.424664e-04	ci right 7.324028e-04	k: 177	n:280000
ETV3   280000 perm   88 sec   (3172 perm/sec)   p_kst 6.321429e-04   p_cons 4.168464e-01   p_joint 5.071429e-04

Joint ci ratio: 3.243393e-01	ci left: 4.219463e-04	ci right 5.883009e-04	k: 145	n:290000
Cons ci ratio: 8.612105e-03	ci left: 4.149151e-01	ci right 4.185072e-01	k: 120846	n:290000
KS ci ratio: 2.912799e-01	ci left: 5.333462e-04	ci right 7.182499e-04	k: 180	n:290000
ETV3   290000 perm   93 sec   (3129 perm/sec)   p_kst 6.206897e-04   p_cons 4.167103e-01   p_joint 5.000000e-04

Joint ci ratio: 3.189243e-01	ci left: 4.232028e-04	ci right 5.866984e-04	k: 150	n:300000
Cons ci ratio: 8.468116e-03	ci left: 4.149016e-01	ci right 4.184333e-01	k: 125000	n:300000
KS ci ratio: 2.873388e-01	ci left: 5.310253e-04	ci right 7.121811e-04	k: 185	n:300000
ETV3   300000 perm   97 sec   (3088 perm/sec)   p_kst 6.166667e-04   p_cons 4.166667e-01   p_joint 5.000000e-04

Joint ci ratio: 3.312251e-01	ci left: 3.769599e-04	ci right 5.294068e-04	k: 139	n:310000
Cons ci ratio: 8.328462e-03	ci left: 4.150443e-01	ci right 4.185186e-01	k: 129202	n:310000
KS ci ratio: 2.828136e-01	ci left: 5.318667e-04	ci right 7.099424e-04	k: 191	n:310000
ETV3   310000 perm   102 sec   (3047 perm/sec)   p_kst 6.161290e-04   p_cons 4.167806e-01   p_joint 4.483871e-04

Joint ci ratio: 3.277331e-01	ci left: 3.737794e-04	ci right 5.230108e-04	k: 142	n:320000
Cons ci ratio: 8.199924e-03	ci left: 4.149161e-01	ci right 4.183354e-01	k: 133320	n:320000
KS ci ratio: 2.799138e-01	ci left: 5.268637e-04	ci right 7.011367e-04	k: 195	n:320000
ETV3   320000 perm   107 sec   (3005 perm/sec)   p_kst 6.093750e-04   p_cons 4.166250e-01   p_joint 4.437500e-04

Joint ci ratio: 3.265949e-01	ci left: 3.652339e-04	ci right 5.104407e-04	k: 143	n:330000
Cons ci ratio: 8.073684e-03	ci left: 4.150050e-01	ci right 4.183722e-01	k: 137507	n:330000
KS ci ratio: 2.777972e-01	ci left: 5.193531e-04	ci right 6.896155e-04	k: 198	n:330000
ETV3   330000 perm   111 sec   (2963 perm/sec)   p_kst 6.000000e-04   p_cons 4.166879e-01   p_joint 4.333333e-04

Joint ci ratio: 3.232458e-01	ci left: 3.625956e-04	ci right 5.049686e-04	k: 146	n:340000
Cons ci ratio: 7.952763e-03	ci left: 4.151097e-01	ci right 4.184270e-01	k: 141701	n:340000
KS ci ratio: 2.750475e-01	ci left: 5.150272e-04	ci right 6.819111e-04	k: 202	n:340000
ETV3   340000 perm   116 sec   (2924 perm/sec)   p_kst 5.941176e-04   p_cons 4.167676e-01   p_joint 4.294118e-04

Joint ci ratio: 3.210701e-01	ci left: 3.574878e-04	ci right 4.967160e-04	k: 148	n:350000
Cons ci ratio: 7.839237e-03	ci left: 4.150774e-01	ci right 4.183469e-01	k: 145849	n:350000
KS ci ratio: 2.717219e-01	ci left: 5.136187e-04	ci right 6.776905e-04	k: 207	n:350000
ETV3   350000 perm   121 sec   (2888 perm/sec)   p_kst 5.914286e-04   p_cons 4.167114e-01   p_joint 4.228571e-04

Joint ci ratio: 3.137827e-01	ci left: 3.654535e-04	ci right 5.039063e-04	k: 155	n:360000
Cons ci ratio: 7.729465e-03	ci left: 4.151082e-01	ci right 4.183320e-01	k: 150019	n:360000
KS ci ratio: 2.666418e-01	ci left: 5.200745e-04	ci right 6.825837e-04	k: 215	n:360000
ETV3   360000 perm   126 sec   (2853 perm/sec)   p_kst 5.972222e-04   p_cons 4.167194e-01   p_joint 4.305556e-04

Joint ci ratio: 3.108090e-01	ci left: 3.630490e-04	ci right 4.990288e-04	k: 158	n:370000
Cons ci ratio: 7.625664e-03	ci left: 4.150432e-01	ci right 4.182230e-01	k: 154154	n:370000
KS ci ratio: 2.642074e-01	ci left: 5.161098e-04	ci right 6.756642e-04	k: 219	n:370000
ETV3   370000 perm   131 sec   (2820 perm/sec)   p_kst 5.918919e-04   p_cons 4.166324e-01   p_joint 4.270270e-04

Joint ci ratio: 3.069718e-01	ci left: 3.632056e-04	ci right 4.972361e-04	k: 162	n:380000
Cons ci ratio: 7.522920e-03	ci left: 4.151765e-01	ci right 4.183142e-01	k: 158363	n:380000
KS ci ratio: 2.612556e-01	ci left: 5.148193e-04	ci right 6.719061e-04	k: 224	n:380000
ETV3   380000 perm   136 sec   (2787 perm/sec)   p_kst 5.894737e-04   p_cons 4.167447e-01   p_joint 4.263158e-04

Joint ci ratio: 3.023690e-01	ci left: 3.657333e-04	ci right 4.982839e-04	k: 167	n:390000
Cons ci ratio: 7.427549e-03	ci left: 4.150854e-01	ci right 4.181825e-01	k: 162487	n:390000
KS ci ratio: 2.584006e-01	ci left: 5.136043e-04	ci right 6.683315e-04	k: 229	n:390000
ETV3   390000 perm   142 sec   (2754 perm/sec)   p_kst 5.871795e-04   p_cons 4.166333e-01   p_joint 4.282051e-04

Joint ci ratio: 3.005860e-01	ci left: 3.612117e-04	ci right 4.912041e-04	k: 169	n:400000
Cons ci ratio: 7.336771e-03	ci left: 4.149292e-01	ci right 4.179871e-01	k: 166583	n:400000
KS ci ratio: 2.561831e-01	ci left: 5.101192e-04	ci right 6.622669e-04	k: 233	n:400000
ETV3   400000 perm   147 sec   (2723 perm/sec)   p_kst 5.825000e-04   p_cons 4.164575e-01   p_joint 4.225000e-04

Joint ci ratio: 2.979688e-01	ci left: 3.591693e-04	ci right 4.870884e-04	k: 172	n:410000
Cons ci ratio: 7.244550e-03	ci left: 4.150952e-01	ci right 4.181157e-01	k: 170808	n:410000
KS ci ratio: 2.545574e-01	ci left: 5.045259e-04	ci right 6.538987e-04	k: 236	n:410000
ETV3   410000 perm   152 sec   (2691 perm/sec)   p_kst 5.756098e-04   p_cons 4.166049e-01   p_joint 4.195122e-04

Joint ci ratio: 2.905064e-01	ci left: 3.704653e-04	ci right 4.984960e-04	k: 181	n:420000
Cons ci ratio: 7.158770e-03	ci left: 4.150466e-01	ci right 4.180308e-01	k: 174946	n:420000
KS ci ratio: 2.488465e-01	ci left: 5.170524e-04	ci right 6.661681e-04	k: 247	n:420000
ETV3   420000 perm   158 sec   (2662 perm/sec)   p_kst 5.880952e-04   p_cons 4.165381e-01   p_joint 4.309524e-04

Joint ci ratio: 2.881418e-01	ci left: 3.683203e-04	ci right 4.943848e-04	k: 184	n:430000
Cons ci ratio: 7.076644e-03	ci left: 4.149539e-01	ci right 4.179031e-01	k: 179064	n:430000
KS ci ratio: 2.473557e-01	ci left: 5.115708e-04	ci right 6.580857e-04	k: 250	n:430000
ETV3   430000 perm   163 sec   (2632 perm/sec)   p_kst 5.813953e-04   p_cons 4.164279e-01   p_joint 4.279070e-04

Joint ci ratio: 2.449284e-01	ci left: 5.106069e-04	ci right 6.551924e-04	k: 255	n:440000
Cons ci ratio: 6.995971e-03	ci left: 4.149565e-01	ci right 4.178719e-01	k: 183222	n:440000
KS ci ratio: 2.449284e-01	ci left: 5.106069e-04	ci right 6.551924e-04	k: 255	n:440000
ETV3   440000 perm   169 sec   (2602 perm/sec)   p_kst 5.795455e-04   p_cons 4.164136e-01   p_joint 5.795455e-04

Joint ci ratio: 2.411883e-01	ci left: 5.159554e-04	ci right 6.594907e-04	k: 263	n:450000
Cons ci ratio: 6.916446e-03	ci left: 4.150680e-01	ci right 4.179509e-01	k: 187429	n:450000
KS ci ratio: 2.411883e-01	ci left: 5.159554e-04	ci right 6.594907e-04	k: 263	n:450000
ETV3   450000 perm   175 sec   (2574 perm/sec)   p_kst 5.844444e-04   p_cons 4.165089e-01   p_joint 5.844444e-04

Joint ci ratio: 2.376144e-01	ci left: 5.210873e-04	ci right 6.635862e-04	k: 271	n:460000
Cons ci ratio: 6.840460e-03	ci left: 4.151118e-01	ci right 4.179632e-01	k: 191607	n:460000
KS ci ratio: 2.376144e-01	ci left: 5.210873e-04	ci right 6.635862e-04	k: 271	n:460000
ETV3   460000 perm   181 sec   (2547 perm/sec)   p_kst 5.891304e-04   p_cons 4.165370e-01   p_joint 5.891304e-04

Joint ci ratio: 2.363155e-01	ci left: 5.160042e-04	ci right 6.562289e-04	k: 274	n:470000
Cons ci ratio: 6.769532e-03	ci left: 4.149667e-01	ci right 4.177875e-01	k: 195697	n:470000
KS ci ratio: 2.363155e-01	ci left: 5.160042e-04	ci right 6.562289e-04	k: 274	n:470000
ETV3   470000 perm   187 sec   (2520 perm/sec)   p_kst 5.829787e-04   p_cons 4.163766e-01   p_joint 5.829787e-04

Joint ci ratio: 2.333638e-01	ci left: 5.189796e-04	ci right 6.579971e-04	k: 281	n:480000
Cons ci ratio: 6.696772e-03	ci left: 4.151173e-01	ci right 4.179087e-01	k: 199926	n:480000
KS ci ratio: 2.333638e-01	ci left: 5.189796e-04	ci right 6.579971e-04	k: 281	n:480000
ETV3   480000 perm   192 sec   (2494 perm/sec)   p_kst 5.854167e-04   p_cons 4.165125e-01   p_joint 5.854167e-04

Joint ci ratio: 2.293321e-01	ci left: 5.276139e-04	ci right 6.661570e-04	k: 291	n:490000
Cons ci ratio: 6.627450e-03	ci left: 4.151783e-01	ci right 4.179410e-01	k: 204114	n:490000
KS ci ratio: 2.293321e-01	ci left: 5.276139e-04	ci right 6.661570e-04	k: 291	n:490000
ETV3   490000 perm   199 sec   (2468 perm/sec)   p_kst 5.938776e-04   p_cons 4.165592e-01   p_joint 5.938776e-04

Joint ci ratio: 2.266314e-01	ci left: 5.302622e-04	ci right 6.676319e-04	k: 298	n:500000
Cons ci ratio: 6.561748e-03	ci left: 4.151250e-01	ci right 4.178599e-01	k: 208246	n:500000
KS ci ratio: 2.266314e-01	ci left: 5.302622e-04	ci right 6.676319e-04	k: 298	n:500000
ETV3   500000 perm   205 sec   (2444 perm/sec)   p_kst 5.960000e-04   p_cons 4.164920e-01   p_joint 5.960000e-04

Joint ci ratio: 2.243912e-01	ci left: 5.309651e-04	ci right 6.669693e-04	k: 304	n:510000
Cons ci ratio: 6.500374e-03	ci left: 4.148937e-01	ci right 4.176014e-01	k: 212286	n:510000
KS ci ratio: 2.243912e-01	ci left: 5.309651e-04	ci right 6.669693e-04	k: 304	n:510000
ETV3   510000 perm   211 sec   (2419 perm/sec)   p_kst 5.960784e-04   p_cons 4.162471e-01   p_joint 5.960784e-04

Joint ci ratio: 2.229345e-01	ci left: 5.280155e-04	ci right 6.622656e-04	k: 308	n:520000
Cons ci ratio: 6.437223e-03	ci left: 4.149328e-01	ci right 4.176143e-01	k: 216462	n:520000
KS ci ratio: 2.229345e-01	ci left: 5.280155e-04	ci right 6.622656e-04	k: 308	n:520000
ETV3   520000 perm   217 sec   (2394 perm/sec)   p_kst 5.923077e-04   p_cons 4.162731e-01   p_joint 5.923077e-04

Joint ci ratio: 2.201031e-01	ci left: 5.323100e-04	ci right 6.657004e-04	k: 316	n:530000
Cons ci ratio: 6.376843e-03	ci left: 4.148970e-01	ci right 4.175530e-01	k: 220599	n:530000
KS ci ratio: 2.201031e-01	ci left: 5.323100e-04	ci right 6.657004e-04	k: 316	n:530000
ETV3   530000 perm   224 sec   (2370 perm/sec)   p_kst 5.962264e-04   p_cons 4.162245e-01   p_joint 5.962264e-04

Joint ci ratio: 2.173768e-01	ci left: 5.364557e-04	ci right 6.689976e-04	k: 324	n:540000
Cons ci ratio: 6.318636e-03	ci left: 4.148237e-01	ci right 4.174550e-01	k: 224715	n:540000
KS ci ratio: 2.173768e-01	ci left: 5.364557e-04	ci right 6.689976e-04	k: 324	n:540000
ETV3   540000 perm   230 sec   (2347 perm/sec)   p_kst 6.000000e-04   p_cons 4.161389e-01   p_joint 6.000000e-04

Joint ci ratio: 2.163810e-01	ci left: 5.318601e-04	ci right 6.625846e-04	k: 327	n:550000
Cons ci ratio: 6.260377e-03	ci left: 4.148786e-01	ci right 4.174859e-01	k: 228900	n:550000
KS ci ratio: 2.163810e-01	ci left: 5.318601e-04	ci right 6.625846e-04	k: 327	n:550000
ETV3   550000 perm   237 sec   (2324 perm/sec)   p_kst 5.945455e-04   p_cons 4.161818e-01   p_joint 5.945455e-04

Joint ci ratio: 2.153988e-01	ci left: 5.274299e-04	ci right 6.563992e-04	k: 330	n:560000
Cons ci ratio: 6.202357e-03	ci left: 4.150370e-01	ci right 4.176210e-01	k: 233144	n:560000
KS ci ratio: 2.153988e-01	ci left: 5.274299e-04	ci right 6.563992e-04	k: 330	n:560000
ETV3   560000 perm   243 sec   (2302 perm/sec)   p_kst 5.892857e-04   p_cons 4.163286e-01   p_joint 5.892857e-04

Joint ci ratio: 2.141093e-01	ci left: 5.248168e-04	ci right 6.522780e-04	k: 334	n:570000
Cons ci ratio: 6.149669e-03	ci left: 4.148936e-01	ci right 4.174546e-01	k: 237219	n:570000
KS ci ratio: 2.141093e-01	ci left: 5.248168e-04	ci right 6.522780e-04	k: 334	n:570000
ETV3   570000 perm   250 sec   (2280 perm/sec)   p_kst 5.859649e-04   p_cons 4.161737e-01   p_joint 5.859649e-04

Joint ci ratio: 2.125293e-01	ci left: 5.239284e-04	ci right 6.501124e-04	k: 339	n:580000
Cons ci ratio: 6.096657e-03	ci left: 4.148862e-01	ci right 4.174250e-01	k: 241370	n:580000
KS ci ratio: 2.125293e-01	ci left: 5.239284e-04	ci right 6.501124e-04	k: 339	n:580000
ETV3   580000 perm   257 sec   (2259 perm/sec)   p_kst 5.844828e-04   p_cons 4.161552e-01   p_joint 5.844828e-04

Joint ci ratio: 2.103746e-01	ci left: 5.262845e-04	ci right 6.515852e-04	k: 346	n:590000
Cons ci ratio: 6.045773e-03	ci left: 4.148164e-01	ci right 4.173336e-01	k: 245484	n:590000
KS ci ratio: 2.103746e-01	ci left: 5.262845e-04	ci right 6.515852e-04	k: 346	n:590000
ETV3   590000 perm   264 sec   (2237 perm/sec)   p_kst 5.864407e-04   p_cons 4.160746e-01   p_joint 5.864407e-04

Joint ci ratio: 2.068276e-01	ci left: 5.364687e-04	ci right 6.617683e-04	k: 358	n:600000
Cons ci ratio: 5.994660e-03	ci left: 4.148690e-01	ci right 4.173651e-01	k: 249670	n:600000
KS ci ratio: 2.068276e-01	ci left: 5.364687e-04	ci right 6.617683e-04	k: 358	n:600000
ETV3   600000 perm   271 sec   (2215 perm/sec)   p_kst 5.966667e-04   p_cons 4.161167e-01   p_joint 5.966667e-04

Joint ci ratio: 2.056852e-01	ci left: 5.338927e-04	ci right 6.578153e-04	k: 362	n:610000
Cons ci ratio: 5.944743e-03	ci left: 4.149265e-01	ci right 4.174021e-01	k: 253860	n:610000
KS ci ratio: 2.056852e-01	ci left: 5.338927e-04	ci right 6.578153e-04	k: 362	n:610000
ETV3   610000 perm   278 sec   (2194 perm/sec)   p_kst 5.934426e-04   p_cons 4.161639e-01   p_joint 5.934426e-04

Joint ci ratio: 2.031814e-01	ci left: 5.390548e-04	ci right 6.624634e-04	k: 371	n:620000
Cons ci ratio: 5.896443e-03	ci left: 4.149500e-01	ci right 4.174056e-01	k: 258030	n:620000
KS ci ratio: 2.031814e-01	ci left: 5.390548e-04	ci right 6.624634e-04	k: 371	n:620000
ETV3   620000 perm   285 sec   (2174 perm/sec)   p_kst 5.983871e-04   p_cons 4.161774e-01   p_joint 5.983871e-04

Joint ci ratio: 2.020981e-01	ci left: 5.365253e-04	ci right 6.586191e-04	k: 375	n:630000
Cons ci ratio: 5.848289e-03	ci left: 4.150570e-01	ci right 4.174930e-01	k: 262253	n:630000
KS ci ratio: 2.020981e-01	ci left: 5.365253e-04	ci right 6.586191e-04	k: 375	n:630000
ETV3   630000 perm   293 sec   (2153 perm/sec)   p_kst 5.952381e-04   p_cons 4.162746e-01   p_joint 5.952381e-04

Joint ci ratio: 2.002425e-01	ci left: 5.385288e-04	ci right 6.598159e-04	k: 382	n:640000
Cons ci ratio: 5.803460e-03	ci left: 4.149795e-01	ci right 4.173963e-01	k: 266360	n:640000
KS ci ratio: 2.002425e-01	ci left: 5.385288e-04	ci right 6.598159e-04	k: 382	n:640000
ETV3   640000 perm   300 sec   (2134 perm/sec)   p_kst 5.968750e-04   p_cons 4.161875e-01   p_joint 5.968750e-04

Joint ci ratio: 1.986923e-01	ci left: 5.390135e-04	ci right 6.593560e-04	k: 388	n:650000
Cons ci ratio: 5.758260e-03	ci left: 4.150213e-01	ci right 4.174195e-01	k: 270543	n:650000
KS ci ratio: 1.986923e-01	ci left: 5.390135e-04	ci right 6.593560e-04	k: 388	n:650000
ETV3   650000 perm   307 sec   (2114 perm/sec)   p_kst 5.969231e-04   p_cons 4.162200e-01   p_joint 5.969231e-04

Joint ci ratio: 1.981840e-01	ci left: 5.337262e-04	ci right 6.525466e-04	k: 390	n:660000
Cons ci ratio: 5.713744e-03	ci left: 4.150922e-01	ci right 4.174722e-01	k: 274746	n:660000
KS ci ratio: 1.981840e-01	ci left: 5.337262e-04	ci right 6.525466e-04	k: 390	n:660000
ETV3   660000 perm   315 sec   (2095 perm/sec)   p_kst 5.909091e-04   p_cons 4.162818e-01   p_joint 5.909091e-04

Joint ci ratio: 1.964333e-01	ci left: 5.356918e-04	ci right 6.537703e-04	k: 397	n:670000
Cons ci ratio: 5.671115e-03	ci left: 4.150865e-01	ci right 4.174486e-01	k: 278899	n:670000
KS ci ratio: 1.964333e-01	ci left: 5.356918e-04	ci right 6.537703e-04	k: 397	n:670000
ETV3   670000 perm   323 sec   (2077 perm/sec)   p_kst 5.925373e-04   p_cons 4.162672e-01   p_joint 5.925373e-04

Joint ci ratio: 1.942489e-01	ci left: 5.404022e-04	ci right 6.580377e-04	k: 406	n:680000
Cons ci ratio: 5.628796e-03	ci left: 4.151353e-01	ci right 4.174801e-01	k: 283089	n:680000
KS ci ratio: 1.942489e-01	ci left: 5.404022e-04	ci right 6.580377e-04	k: 406	n:680000
ETV3   680000 perm   330 sec   (2059 perm/sec)   p_kst 5.970588e-04   p_cons 4.163074e-01   p_joint 5.970588e-04

Joint ci ratio: 1.925995e-01	ci left: 5.422240e-04	ci right 6.591364e-04	k: 413	n:690000
Cons ci ratio: 5.587344e-03	ci left: 4.151887e-01	ci right 4.175164e-01	k: 287283	n:690000
KS ci ratio: 1.925995e-01	ci left: 5.422240e-04	ci right 6.591364e-04	k: 413	n:690000
ETV3   690000 perm   338 sec   (2042 perm/sec)   p_kst 5.985507e-04   p_cons 4.163522e-01   p_joint 5.985507e-04

Joint ci ratio: 1.914471e-01	ci left: 5.412774e-04	ci right 6.572060e-04	k: 418	n:700000
Cons ci ratio: 5.548066e-03	ci left: 4.151292e-01	ci right 4.174401e-01	k: 291399	n:700000
KS ci ratio: 1.914471e-01	ci left: 5.412774e-04	ci right 6.572060e-04	k: 418	n:700000
ETV3   700000 perm   346 sec   (2025 perm/sec)   p_kst 5.971429e-04   p_cons 4.162843e-01   p_joint 5.971429e-04

Joint ci ratio: 1.898675e-01	ci left: 5.430424e-04	ci right 6.582787e-04	k: 425	n:710000
Cons ci ratio: 5.508998e-03	ci left: 4.151249e-01	ci right 4.174195e-01	k: 295553	n:710000
KS ci ratio: 1.898675e-01	ci left: 5.430424e-04	ci right 6.582787e-04	k: 425	n:710000
ETV3   710000 perm   354 sec   (2007 perm/sec)   p_kst 5.985915e-04   p_cons 4.162718e-01   p_joint 5.985915e-04

Joint ci ratio: 1.896457e-01	ci left: 5.368229e-04	ci right 6.505910e-04	k: 426	n:720000
Cons ci ratio: 5.470024e-03	ci left: 4.151846e-01	ci right 4.174633e-01	k: 299753	n:720000
KS ci ratio: 1.896457e-01	ci left: 5.368229e-04	ci right 6.505910e-04	k: 426	n:720000
ETV3   720000 perm   362 sec   (1991 perm/sec)   p_kst 5.916667e-04   p_cons 4.163236e-01   p_joint 5.916667e-04

Joint ci ratio: 1.876778e-01	ci left: 5.412157e-04	ci right 6.545890e-04	k: 435	n:730000
Cons ci ratio: 5.433199e-03	ci left: 4.151237e-01	ci right 4.173866e-01	k: 303866	n:730000
KS ci ratio: 1.876778e-01	ci left: 5.412157e-04	ci right 6.545890e-04	k: 435	n:730000
ETV3   730000 perm   370 sec   (1974 perm/sec)   p_kst 5.958904e-04   p_cons 4.162548e-01   p_joint 5.958904e-04

Joint ci ratio: 1.863996e-01	ci left: 5.416305e-04	ci right 6.542305e-04	k: 441	n:740000
Cons ci ratio: 5.396446e-03	ci left: 4.151238e-01	ci right 4.173714e-01	k: 308023	n:740000
KS ci ratio: 1.863996e-01	ci left: 5.416305e-04	ci right 6.542305e-04	k: 441	n:740000
ETV3   740000 perm   378 sec   (1958 perm/sec)   p_kst 5.959459e-04   p_cons 4.162473e-01   p_joint 5.959459e-04

Joint ci ratio: 1.845300e-01	ci left: 5.458517e-04	ci right 6.580638e-04	k: 450	n:750000
Cons ci ratio: 5.361327e-03	ci left: 4.150428e-01	ci right 4.172752e-01	k: 312119	n:750000
KS ci ratio: 1.845300e-01	ci left: 5.458517e-04	ci right 6.580638e-04	k: 450	n:750000
ETV3   750000 perm   386 sec   (1942 perm/sec)   p_kst 6.000000e-04   p_cons 4.161587e-01   p_joint 6.000000e-04

Joint ci ratio: 1.831143e-01	ci left: 5.474562e-04	ci right 6.590389e-04	k: 457	n:760000
Cons ci ratio: 5.325154e-03	ci left: 4.151217e-01	ci right 4.173395e-01	k: 316335	n:760000
KS ci ratio: 1.831143e-01	ci left: 5.474562e-04	ci right 6.590389e-04	k: 457	n:760000
ETV3   760000 perm   395 sec   (1926 perm/sec)   p_kst 6.013158e-04   p_cons 4.162303e-01   p_joint 6.013158e-04

Joint ci ratio: 1.821230e-01	ci left: 5.465431e-04	ci right 6.572700e-04	k: 462	n:770000
Cons ci ratio: 5.291174e-03	ci left: 4.150636e-01	ci right 4.172669e-01	k: 320447	n:770000
KS ci ratio: 1.821230e-01	ci left: 5.465431e-04	ci right 6.572700e-04	k: 462	n:770000
ETV3   770000 perm   403 sec   (1911 perm/sec)   p_kst 6.000000e-04   p_cons 4.161649e-01   p_joint 6.000000e-04

Joint ci ratio: 1.805694e-01	ci left: 5.493270e-04	ci right 6.595649e-04	k: 470	n:780000
Cons ci ratio: 5.257558e-03	ci left: 4.150327e-01	ci right 4.172218e-01	k: 324579	n:780000
KS ci ratio: 1.805694e-01	ci left: 5.493270e-04	ci right 6.595649e-04	k: 470	n:780000
ETV3   780000 perm   411 sec   (1896 perm/sec)   p_kst 6.025641e-04   p_cons 4.161269e-01   p_joint 6.025641e-04

Joint ci ratio: 1.792423e-01	ci left: 5.508353e-04	ci right 6.604753e-04	k: 477	n:790000
Cons ci ratio: 5.224466e-03	ci left: 4.150127e-01	ci right 4.171879e-01	k: 328719	n:790000
KS ci ratio: 1.792423e-01	ci left: 5.508353e-04	ci right 6.604753e-04	k: 477	n:790000
ETV3   790000 perm   420 sec   (1879 perm/sec)   p_kst 6.037975e-04   p_cons 4.161000e-01   p_joint 6.037975e-04

Joint ci ratio: 1.775780e-01	ci left: 5.546976e-04	ci right 6.639711e-04	k: 486	n:800000
Cons ci ratio: 5.192432e-03	ci left: 4.149521e-01	ci right 4.171135e-01	k: 332826	n:800000
KS ci ratio: 1.775780e-01	ci left: 5.546976e-04	ci right 6.639711e-04	k: 486	n:800000
ETV3   800000 perm   429 sec   (1864 perm/sec)   p_kst 6.075000e-04   p_cons 4.160325e-01   p_joint 6.075000e-04

Joint ci ratio: 1.764941e-01	ci left: 5.549286e-04	ci right 6.635092e-04	k: 492	n:810000
Cons ci ratio: 5.160573e-03	ci left: 4.149312e-01	ci right 4.170792e-01	k: 336964	n:810000
KS ci ratio: 1.764941e-01	ci left: 5.549286e-04	ci right 6.635092e-04	k: 492	n:810000
ETV3   810000 perm   438 sec   (1850 perm/sec)   p_kst 6.074074e-04   p_cons 4.160049e-01   p_joint 6.074074e-04

Joint ci ratio: 1.754298e-01	ci left: 5.551560e-04	ci right 6.630566e-04	k: 498	n:820000
Cons ci ratio: 5.128006e-03	ci left: 4.150328e-01	ci right 4.171678e-01	k: 341202	n:820000
KS ci ratio: 1.754298e-01	ci left: 5.551560e-04	ci right 6.630566e-04	k: 498	n:820000
ETV3   820000 perm   447 sec   (1835 perm/sec)   p_kst 6.073171e-04   p_cons 4.161000e-01   p_joint 6.073171e-04

Joint ci ratio: 1.749051e-01	ci left: 5.519233e-04	ci right 6.588409e-04	k: 501	n:830000
Cons ci ratio: 5.097881e-03	ci left: 4.149574e-01	ci right 4.170794e-01	k: 345295	n:830000
KS ci ratio: 1.749051e-01	ci left: 5.519233e-04	ci right 6.588409e-04	k: 501	n:830000
ETV3   830000 perm   456 sec   (1821 perm/sec)   p_kst 6.036145e-04   p_cons 4.160181e-01   p_joint 6.036145e-04

Joint ci ratio: 1.740407e-01	ci left: 5.510452e-04	ci right 6.572096e-04	k: 506	n:840000
Cons ci ratio: 5.067336e-03	ci left: 4.149742e-01	ci right 4.170835e-01	k: 349464	n:840000
KS ci ratio: 1.740407e-01	ci left: 5.510452e-04	ci right 6.572096e-04	k: 506	n:840000
ETV3   840000 perm   465 sec   (1807 perm/sec)   p_kst 6.023810e-04   p_cons 4.160286e-01   p_joint 6.023810e-04

Joint ci ratio: 1.731889e-01	ci left: 5.501890e-04	ci right 6.556155e-04	k: 511	n:850000
Cons ci ratio: 5.036785e-03	ci left: 4.150436e-01	ci right 4.171405e-01	k: 353678	n:850000
KS ci ratio: 1.731889e-01	ci left: 5.501890e-04	ci right 6.556155e-04	k: 511	n:850000
ETV3   850000 perm   474 sec   (1793 perm/sec)   p_kst 6.011765e-04   p_cons 4.160918e-01   p_joint 6.011765e-04

Joint ci ratio: 1.713574e-01	ci left: 5.560308e-04	ci right 6.613335e-04	k: 522	n:860000
Cons ci ratio: 5.007223e-03	ci left: 4.150684e-01	ci right 4.171531e-01	k: 357855	n:860000
KS ci ratio: 1.713574e-01	ci left: 5.560308e-04	ci right 6.613335e-04	k: 522	n:860000
ETV3   860000 perm   484 sec   (1779 perm/sec)   p_kst 6.069767e-04   p_cons 4.161105e-01   p_joint 6.069767e-04

Joint ci ratio: 1.703829e-01	ci left: 5.562413e-04	ci right 6.609232e-04	k: 528	n:870000
Cons ci ratio: 4.979436e-03	ci left: 4.149697e-01	ci right 4.170423e-01	k: 361925	n:870000
KS ci ratio: 1.703829e-01	ci left: 5.562413e-04	ci right 6.609232e-04	k: 528	n:870000
ETV3   870000 perm   493 sec   (1765 perm/sec)   p_kst 6.068966e-04   p_cons 4.160057e-01   p_joint 6.068966e-04

Joint ci ratio: 1.694248e-01	ci left: 5.564487e-04	ci right 6.605205e-04	k: 534	n:880000
Cons ci ratio: 4.951040e-03	ci left: 4.149778e-01	ci right 4.170386e-01	k: 366087	n:880000
KS ci ratio: 1.694248e-01	ci left: 5.564487e-04	ci right 6.605205e-04	k: 534	n:880000
ETV3   880000 perm   502 sec   (1752 perm/sec)   p_kst 6.068182e-04   p_cons 4.160080e-01   p_joint 6.068182e-04

Joint ci ratio: 1.680171e-01	ci left: 5.598819e-04	ci right 6.636378e-04	k: 543	n:890000
Cons ci ratio: 4.923330e-03	ci left: 4.149656e-01	ci right 4.170147e-01	k: 370231	n:890000
KS ci ratio: 1.680171e-01	ci left: 5.598819e-04	ci right 6.636378e-04	k: 543	n:890000
ETV3   890000 perm   512 sec   (1739 perm/sec)   p_kst 6.101124e-04   p_cons 4.159899e-01   p_joint 6.101124e-04

Joint ci ratio: 1.670982e-01	ci left: 5.600481e-04	ci right 6.632100e-04	k: 549	n:900000
Cons ci ratio: 4.896573e-03	ci left: 4.149048e-01	ci right 4.169424e-01	k: 374331	n:900000
KS ci ratio: 1.670982e-01	ci left: 5.600481e-04	ci right 6.632100e-04	k: 549	n:900000
ETV3   900000 perm   521 sec   (1726 perm/sec)   p_kst 6.100000e-04   p_cons 4.159233e-01   p_joint 6.100000e-04

Joint ci ratio: 1.657473e-01	ci left: 5.633720e-04	ci right 6.662236e-04	k: 558	n:910000
Cons ci ratio: 4.869938e-03	ci left: 4.148761e-01	ci right 4.169025e-01	k: 378459	n:910000
KS ci ratio: 1.657473e-01	ci left: 5.633720e-04	ci right 6.662236e-04	k: 558	n:910000
ETV3   910000 perm   531 sec   (1713 perm/sec)   p_kst 6.131868e-04   p_cons 4.158890e-01   p_joint 6.131868e-04

Joint ci ratio: 1.650111e-01	ci left: 5.624582e-04	ci right 6.646416e-04	k: 563	n:920000
Cons ci ratio: 4.842802e-03	ci left: 4.149415e-01	ci right 4.169569e-01	k: 382673	n:920000
KS ci ratio: 1.650111e-01	ci left: 5.624582e-04	ci right 6.646416e-04	k: 563	n:920000
ETV3   920000 perm   541 sec   (1701 perm/sec)   p_kst 6.119565e-04   p_cons 4.159489e-01   p_joint 6.119565e-04

Joint ci ratio: 1.632827e-01	ci left: 5.687836e-04	ci right 6.709275e-04	k: 575	n:930000
Cons ci ratio: 4.816807e-03	ci left: 4.149356e-01	ci right 4.169402e-01	k: 386822	n:930000
KS ci ratio: 1.632827e-01	ci left: 5.687836e-04	ci right 6.709275e-04	k: 575	n:930000
ETV3   930000 perm   551 sec   (1689 perm/sec)   p_kst 6.182796e-04   p_cons 4.159376e-01   p_joint 6.182796e-04

Joint ci ratio: 1.624388e-01	ci left: 5.688555e-04	ci right 6.704329e-04	k: 581	n:940000
Cons ci ratio: 4.791027e-03	ci left: 4.149501e-01	ci right 4.169440e-01	k: 390990	n:940000
KS ci ratio: 1.624388e-01	ci left: 5.688555e-04	ci right 6.704329e-04	k: 581	n:940000
ETV3   940000 perm   561 sec   (1677 perm/sec)   p_kst 6.180851e-04   p_cons 4.159468e-01   p_joint 6.180851e-04

Joint ci ratio: 1.616080e-01	ci left: 5.689273e-04	ci right 6.699473e-04	k: 587	n:950000
Cons ci ratio: 4.764851e-03	ci left: 4.150465e-01	ci right 4.170298e-01	k: 395236	n:950000
KS ci ratio: 1.616080e-01	ci left: 5.689273e-04	ci right 6.699473e-04	k: 587	n:950000
ETV3   950000 perm   570 sec   (1665 perm/sec)   p_kst 6.178947e-04   p_cons 4.160379e-01   p_joint 6.178947e-04

Joint ci ratio: 1.606544e-01	ci left: 5.699986e-04	ci right 6.705541e-04	k: 594	n:960000
Cons ci ratio: 4.740308e-03	ci left: 4.150169e-01	ci right 4.169899e-01	k: 399363	n:960000
KS ci ratio: 1.606544e-01	ci left: 5.699986e-04	ci right 6.705541e-04	k: 594	n:960000
ETV3   960000 perm   581 sec   (1653 perm/sec)   p_kst 6.187500e-04   p_cons 4.160031e-01   p_joint 6.187500e-04

Joint ci ratio: 1.598505e-01	ci left: 5.700599e-04	ci right 6.700746e-04	k: 600	n:970000
Cons ci ratio: 4.715491e-03	ci left: 4.150549e-01	ci right 4.170177e-01	k: 403555	n:970000
KS ci ratio: 1.598505e-01	ci left: 5.700599e-04	ci right 6.700746e-04	k: 600	n:970000
ETV3   970000 perm   591 sec   (1641 perm/sec)   p_kst 6.185567e-04   p_cons 4.160361e-01   p_joint 6.185567e-04

Joint ci ratio: 1.589276e-01	ci left: 5.711009e-04	ci right 6.706646e-04	k: 607	n:980000
Cons ci ratio: 4.691403e-03	ci left: 4.150565e-01	ci right 4.170093e-01	k: 407712	n:980000
KS ci ratio: 1.589276e-01	ci left: 5.711009e-04	ci right 6.706646e-04	k: 607	n:980000
ETV3   980000 perm   601 sec   (1630 perm/sec)   p_kst 6.193878e-04   p_cons 4.160327e-01   p_joint 6.193878e-04

Joint ci ratio: 1.580205e-01	ci left: 5.721225e-04	ci right 6.712411e-04	k: 614	n:990000
Cons ci ratio: 4.668371e-03	ci left: 4.149864e-01	ci right 4.169292e-01	k: 411798	n:990000
KS ci ratio: 1.580205e-01	ci left: 5.721225e-04	ci right 6.712411e-04	k: 614	n:990000
ETV3   990000 perm   612 sec   (1619 perm/sec)   p_kst 6.202020e-04   p_cons 4.159576e-01   p_joint 6.202020e-04

Joint ci ratio: 1.572553e-01	ci left: 5.721646e-04	ci right 6.707652e-04	k: 620	n:1000000
Cons ci ratio: 4.644660e-03	ci left: 4.150237e-01	ci right 4.169568e-01	k: 415990	n:1000000
KS ci ratio: 1.572553e-01	ci left: 5.721646e-04	ci right 6.707652e-04	k: 620	n:1000000
ETV3   1000000 perm   622 sec   (1608 perm/sec)   p_kst 6.200000e-04   p_cons 4.159900e-01   p_joint 6.200000e-04

Joint ci ratio: 1.561277e-01	ci left: 5.750612e-04	ci right 6.733838e-04	k: 629	n:1010000
Cons ci ratio: 4.621223e-03	ci left: 4.150692e-01	ci right 4.169927e-01	k: 420191	n:1010000
KS ci ratio: 1.561277e-01	ci left: 5.750612e-04	ci right 6.733838e-04	k: 629	n:1010000
ETV3   1010000 perm   633 sec   (1597 perm/sec)   p_kst 6.227723e-04   p_cons 4.160307e-01   p_joint 6.227723e-04

Joint ci ratio: 1.547820e-01	ci left: 5.797883e-04	ci right 6.779854e-04	k: 640	n:1020000
Cons ci ratio: 4.597719e-03	ci left: 4.151579e-01	ci right 4.170720e-01	k: 424437	n:1020000
KS ci ratio: 1.547820e-01	ci left: 5.797883e-04	ci right 6.779854e-04	k: 640	n:1020000
ETV3   1020000 perm   643 sec   (1586 perm/sec)   p_kst 6.274510e-04   p_cons 4.161147e-01   p_joint 6.274510e-04

Joint ci ratio: 1.535883e-01	ci left: 5.834935e-04	ci right 6.814859e-04	k: 650	n:1030000
Cons ci ratio: 4.575237e-03	ci left: 4.151740e-01	ci right 4.170789e-01	k: 428610	n:1030000
KS ci ratio: 1.535883e-01	ci left: 5.834935e-04	ci right 6.814859e-04	k: 650	n:1030000
ETV3   1030000 perm   654 sec   (1575 perm/sec)   p_kst 6.310680e-04   p_cons 4.161262e-01   p_joint 6.310680e-04

Joint ci ratio: 1.527691e-01	ci left: 5.843558e-04	ci right 6.819217e-04	k: 657	n:1040000
Cons ci ratio: 4.552920e-03	ci left: 4.152072e-01	ci right 4.171029e-01	k: 432801	n:1040000
KS ci ratio: 1.527691e-01	ci left: 5.843558e-04	ci right 6.819217e-04	k: 657	n:1040000
ETV3   1040000 perm   665 sec   (1565 perm/sec)   p_kst 6.317308e-04   p_cons 4.161548e-01   p_joint 6.317308e-04

Joint ci ratio: 1.518487e-01	ci left: 5.861192e-04	ci right 6.833364e-04	k: 665	n:1050000
Cons ci ratio: 4.530784e-03	ci left: 4.152550e-01	ci right 4.171416e-01	k: 437008	n:1050000
KS ci ratio: 1.518487e-01	ci left: 5.861192e-04	ci right 6.833364e-04	k: 665	n:1050000
ETV3   1050000 perm   676 sec   (1554 perm/sec)   p_kst 6.333333e-04   p_cons 4.161981e-01   p_joint 6.333333e-04

Joint ci ratio: 1.512819e-01	ci left: 5.851279e-04	ci right 6.817856e-04	k: 670	n:1060000
Cons ci ratio: 4.509432e-03	ci left: 4.152519e-01	ci right 4.171296e-01	k: 441162	n:1060000
KS ci ratio: 1.512819e-01	ci left: 5.851279e-04	ci right 6.817856e-04	k: 670	n:1060000
ETV3   1060000 perm   687 sec   (1544 perm/sec)   p_kst 6.320755e-04   p_cons 4.161906e-01   p_joint 6.320755e-04

Joint ci ratio: 1.511697e-01	ci left: 5.805585e-04	ci right 6.763838e-04	k: 671	n:1070000
Cons ci ratio: 4.487861e-03	ci left: 4.153050e-01	ci right 4.171739e-01	k: 445376	n:1070000
KS ci ratio: 1.511697e-01	ci left: 5.805585e-04	ci right 6.763838e-04	k: 671	n:1070000
ETV3   1070000 perm   698 sec   (1534 perm/sec)   p_kst 6.271028e-04   p_cons 4.162393e-01   p_joint 6.271028e-04

Joint ci ratio: 1.503884e-01	ci left: 5.814199e-04	ci right 6.768468e-04	k: 678	n:1080000
Cons ci ratio: 4.467405e-03	ci left: 4.152692e-01	ci right 4.171294e-01	k: 449495	n:1080000
KS ci ratio: 1.503884e-01	ci left: 5.814199e-04	ci right 6.768468e-04	k: 678	n:1080000
ETV3   1080000 perm   709 sec   (1524 perm/sec)   p_kst 6.277778e-04   p_cons 4.161991e-01   p_joint 6.277778e-04

Joint ci ratio: 1.492928e-01	ci left: 5.849162e-04	ci right 6.801551e-04	k: 688	n:1090000
Cons ci ratio: 4.447687e-03	ci left: 4.151836e-01	ci right 4.170352e-01	k: 453559	n:1090000
KS ci ratio: 1.492928e-01	ci left: 5.849162e-04	ci right 6.801551e-04	k: 688	n:1090000
ETV3   1090000 perm   720 sec   (1514 perm/sec)   p_kst 6.311927e-04   p_cons 4.161092e-01   p_joint 6.311927e-04

Joint ci ratio: 1.485401e-01	ci left: 5.857254e-04	ci right 6.805724e-04	k: 695	n:1100000
Cons ci ratio: 4.427144e-03	ci left: 4.152186e-01	ci right 4.170618e-01	k: 457754	n:1100000
KS ci ratio: 1.485401e-01	ci left: 5.857254e-04	ci right 6.805724e-04	k: 695	n:1100000
ETV3   1100000 perm   731 sec   (1505 perm/sec)   p_kst 6.318182e-04   p_cons 4.161400e-01   p_joint 6.318182e-04

Joint ci ratio: 1.482213e-01	ci left: 5.830509e-04	ci right 6.772442e-04	k: 698	n:1110000
Cons ci ratio: 4.406490e-03	ci left: 4.152963e-01	ci right 4.171312e-01	k: 461997	n:1110000
KS ci ratio: 1.482213e-01	ci left: 5.830509e-04	ci right 6.772442e-04	k: 698	n:1110000
ETV3   1110000 perm   742 sec   (1495 perm/sec)   p_kst 6.288288e-04   p_cons 4.162135e-01   p_joint 6.288288e-04

Joint ci ratio: 1.477991e-01	ci left: 5.812842e-04	ci right 6.749010e-04	k: 702	n:1120000
Cons ci ratio: 4.387106e-03	ci left: 4.152637e-01	ci right 4.170903e-01	k: 466118	n:1120000
KS ci ratio: 1.477991e-01	ci left: 5.812842e-04	ci right 6.749010e-04	k: 702	n:1120000
ETV3   1120000 perm   754 sec   (1486 perm/sec)   p_kst 6.267857e-04   p_cons 4.161768e-01   p_joint 6.267857e-04

Joint ci ratio: 1.467588e-01	ci left: 5.846636e-04	ci right 6.781038e-04	k: 712	n:1130000
Cons ci ratio: 4.367434e-03	ci left: 4.152918e-01	ci right 4.171104e-01	k: 470307	n:1130000
KS ci ratio: 1.467588e-01	ci left: 5.846636e-04	ci right 6.781038e-04	k: 712	n:1130000
ETV3   1130000 perm   765 sec   (1476 perm/sec)   p_kst 6.300885e-04   p_cons 4.162009e-01   p_joint 6.300885e-04

Joint ci ratio: 1.462470e-01	ci left: 5.837601e-04	ci right 6.767022e-04	k: 717	n:1140000
Cons ci ratio: 4.348158e-03	ci left: 4.153046e-01	ci right 4.171152e-01	k: 474479	n:1140000
KS ci ratio: 1.462470e-01	ci left: 5.837601e-04	ci right 6.767022e-04	k: 717	n:1140000
ETV3   1140000 perm   777 sec   (1467 perm/sec)   p_kst 6.289474e-04   p_cons 4.162096e-01   p_joint 6.289474e-04

Joint ci ratio: 1.450396e-01	ci left: 5.887386e-04	ci right 6.816324e-04	k: 729	n:1150000
Cons ci ratio: 4.328864e-03	ci left: 4.153475e-01	ci right 4.171503e-01	k: 478686	n:1150000
KS ci ratio: 1.450396e-01	ci left: 5.887386e-04	ci right 6.816324e-04	k: 729	n:1150000
ETV3   1150000 perm   789 sec   (1458 perm/sec)   p_kst 6.339130e-04   p_cons 4.162487e-01   p_joint 6.339130e-04

Joint ci ratio: 1.443491e-01	ci left: 5.894793e-04	ci right 6.820091e-04	k: 736	n:1160000
Cons ci ratio: 4.310742e-03	ci left: 4.152864e-01	ci right 4.170813e-01	k: 482773	n:1160000
KS ci ratio: 1.443491e-01	ci left: 5.894793e-04	ci right 6.820091e-04	k: 736	n:1160000
ETV3   1160000 perm   801 sec   (1449 perm/sec)   p_kst 6.344828e-04   p_cons 4.161836e-01   p_joint 6.344828e-04

Joint ci ratio: 1.437651e-01	ci left: 5.893844e-04	ci right 6.814929e-04	k: 742	n:1170000
Cons ci ratio: 4.292740e-03	ci left: 4.152382e-01	ci right 4.170254e-01	k: 486874	n:1170000
KS ci ratio: 1.437651e-01	ci left: 5.893844e-04	ci right 6.814929e-04	k: 742	n:1170000
ETV3   1170000 perm   812 sec   (1440 perm/sec)   p_kst 6.341880e-04   p_cons 4.161316e-01   p_joint 6.341880e-04

Joint ci ratio: 1.433798e-01	ci left: 5.876576e-04	ci right 6.792291e-04	k: 746	n:1180000
Cons ci ratio: 4.274797e-03	ci left: 4.152096e-01	ci right 4.169891e-01	k: 490997	n:1180000
KS ci ratio: 1.433798e-01	ci left: 5.876576e-04	ci right 6.792291e-04	k: 746	n:1180000
ETV3   1180000 perm   824 sec   (1431 perm/sec)   p_kst 6.322034e-04   p_cons 4.160992e-01   p_joint 6.322034e-04

Joint ci ratio: 1.424294e-01	ci left: 5.908223e-04	ci right 6.822248e-04	k: 756	n:1190000
Cons ci ratio: 4.256562e-03	ci left: 4.152402e-01	ci right 4.170123e-01	k: 495190	n:1190000
KS ci ratio: 1.424294e-01	ci left: 5.908223e-04	ci right 6.822248e-04	k: 756	n:1190000
ETV3   1190000 perm   836 sec   (1423 perm/sec)   p_kst 6.352941e-04   p_cons 4.161261e-01   p_joint 6.352941e-04

Joint ci ratio: 1.417754e-01	ci left: 5.915248e-04	ci right 6.825801e-04	k: 763	n:1200000
Cons ci ratio: 4.238065e-03	ci left: 4.153270e-01	ci right 4.170917e-01	k: 499451	n:1200000
KS ci ratio: 1.417754e-01	ci left: 5.915248e-04	ci right 6.825801e-04	k: 763	n:1200000
ETV3   1200000 perm   848 sec   (1415 perm/sec)   p_kst 6.358333e-04   p_cons 4.162092e-01   p_joint 6.358333e-04

Joint ci ratio: 1.407654e-01	ci left: 5.954058e-04	ci right 6.863509e-04	k: 774	n:1210000
Cons ci ratio: 4.220438e-03	ci left: 4.153397e-01	ci right 4.170971e-01	k: 503624	n:1210000
KS ci ratio: 1.407654e-01	ci left: 5.954058e-04	ci right 6.863509e-04	k: 774	n:1210000
ETV3   1210000 perm   860 sec   (1406 perm/sec)   p_kst 6.396694e-04   p_cons 4.162182e-01   p_joint 6.396694e-04

Joint ci ratio: 1.403136e-01	ci left: 5.944797e-04	ci right 6.849675e-04	k: 779	n:1220000
Cons ci ratio: 4.203071e-03	ci left: 4.153472e-01	ci right 4.170974e-01	k: 507791	n:1220000
KS ci ratio: 1.403136e-01	ci left: 5.944797e-04	ci right 6.849675e-04	k: 779	n:1220000
ETV3   1220000 perm   873 sec   (1398 perm/sec)   p_kst 6.385246e-04   p_cons 4.162221e-01   p_joint 6.385246e-04

Joint ci ratio: 1.396881e-01	ci left: 5.951382e-04	ci right 6.852889e-04	k: 786	n:1230000
Cons ci ratio: 4.185882e-03	ci left: 4.153587e-01	ci right 4.171018e-01	k: 511963	n:1230000
KS ci ratio: 1.396881e-01	ci left: 5.951382e-04	ci right 6.852889e-04	k: 786	n:1230000
ETV3   1230000 perm   885 sec   (1390 perm/sec)   p_kst 6.390244e-04   p_cons 4.162301e-01   p_joint 6.390244e-04

Joint ci ratio: 1.392466e-01	ci left: 5.942303e-04	ci right 6.839352e-04	k: 791	n:1240000
Cons ci ratio: 4.168626e-03	ci left: 4.154023e-01	ci right 4.171384e-01	k: 516175	n:1240000
KS ci ratio: 1.392466e-01	ci left: 5.942303e-04	ci right 6.839352e-04	k: 791	n:1240000
ETV3   1240000 perm   898 sec   (1381 perm/sec)   p_kst 6.379032e-04   p_cons 4.162702e-01   p_joint 6.379032e-04

Joint ci ratio: 1.388092e-01	ci left: 5.933373e-04	ci right 6.826028e-04	k: 796	n:1250000
Cons ci ratio: 4.152544e-03	ci left: 4.153325e-01	ci right 4.170615e-01	k: 520246	n:1250000
KS ci ratio: 1.388092e-01	ci left: 5.933373e-04	ci right 6.826028e-04	k: 796	n:1250000
ETV3   1250000 perm   910 sec   (1373 perm/sec)   p_kst 6.368000e-04   p_cons 4.161968e-01   p_joint 6.368000e-04

Joint ci ratio: 1.381176e-01	ci left: 5.947575e-04	ci right 6.837543e-04	k: 804	n:1260000
Cons ci ratio: 4.136047e-03	ci left: 4.153343e-01	ci right 4.170565e-01	k: 524406	n:1260000
KS ci ratio: 1.381176e-01	ci left: 5.947575e-04	ci right 6.837543e-04	k: 804	n:1260000
ETV3   1260000 perm   923 sec   (1365 perm/sec)   p_kst 6.380952e-04   p_cons 4.161952e-01   p_joint 6.380952e-04

Joint ci ratio: 1.376058e-01	ci left: 5.946359e-04	ci right 6.832577e-04	k: 810	n:1270000
Cons ci ratio: 4.120064e-03	ci left: 4.152984e-01	ci right 4.170138e-01	k: 528518	n:1270000
KS ci ratio: 1.376058e-01	ci left: 5.946359e-04	ci right 6.832577e-04	k: 810	n:1270000
ETV3   1270000 perm   936 sec   (1357 perm/sec)   p_kst 6.377953e-04   p_cons 4.161559e-01   p_joint 6.377953e-04

Joint ci ratio: 1.371836e-01	ci left: 5.937622e-04	ci right 6.819602e-04	k: 815	n:1280000
Cons ci ratio: 4.103936e-03	ci left: 4.153021e-01	ci right 4.170108e-01	k: 532680	n:1280000
KS ci ratio: 1.371836e-01	ci left: 5.937622e-04	ci right 6.819602e-04	k: 815	n:1280000
ETV3   1280000 perm   948 sec   (1350 perm/sec)   p_kst 6.367188e-04   p_cons 4.161563e-01   p_joint 6.367188e-04

Joint ci ratio: 1.367653e-01	ci left: 5.929026e-04	ci right 6.806824e-04	k: 820	n:1290000
Cons ci ratio: 4.087513e-03	ci left: 4.153631e-01	ci right 4.170652e-01	k: 536916	n:1290000
KS ci ratio: 1.367653e-01	ci left: 5.929026e-04	ci right 6.806824e-04	k: 820	n:1290000
ETV3   1290000 perm   961 sec   (1342 perm/sec)   p_kst 6.356589e-04   p_cons 4.162140e-01   p_joint 6.356589e-04

Joint ci ratio: 1.364335e-01	ci left: 5.913135e-04	ci right 6.786285e-04	k: 824	n:1300000
Cons ci ratio: 4.072014e-03	ci left: 4.153363e-01	ci right 4.170318e-01	k: 541039	n:1300000
KS ci ratio: 1.364335e-01	ci left: 5.913135e-04	ci right 6.786285e-04	k: 824	n:1300000
ETV3   1300000 perm   974 sec   (1334 perm/sec)   p_kst 6.338462e-04   p_cons 4.161838e-01   p_joint 6.338462e-04

Joint ci ratio: 1.360220e-01	ci left: 5.904864e-04	ci right 6.773949e-04	k: 829	n:1310000
Cons ci ratio: 4.056135e-03	ci left: 4.153763e-01	ci right 4.170653e-01	k: 545249	n:1310000
KS ci ratio: 1.360220e-01	ci left: 5.904864e-04	ci right 6.773949e-04	k: 829	n:1310000
ETV3   1310000 perm   988 sec   (1327 perm/sec)   p_kst 6.328244e-04   p_cons 4.162206e-01   p_joint 6.328244e-04

Joint ci ratio: 1.352904e-01	ci left: 5.925998e-04	ci right 6.793125e-04	k: 838	n:1320000
Cons ci ratio: 4.040472e-03	ci left: 4.154119e-01	ci right 4.170945e-01	k: 549454	n:1320000
KS ci ratio: 1.352904e-01	ci left: 5.925998e-04	ci right 6.793125e-04	k: 838	n:1320000
ETV3   1320000 perm   1001 sec   (1319 perm/sec)   p_kst 6.348485e-04   p_cons 4.162530e-01   p_joint 6.348485e-04

Joint ci ratio: 1.350493e-01	ci left: 5.903235e-04	ci right 6.765368e-04	k: 841	n:1330000
Cons ci ratio: 4.025419e-03	ci left: 4.153951e-01	ci right 4.170714e-01	k: 553590	n:1330000
KS ci ratio: 1.350493e-01	ci left: 5.903235e-04	ci right 6.765368e-04	k: 841	n:1330000
ETV3   1330000 perm   1014 sec   (1312 perm/sec)   p_kst 6.323308e-04   p_cons 4.162331e-01   p_joint 6.323308e-04

Joint ci ratio: 1.348095e-01	ci left: 5.880813e-04	ci right 6.738024e-04	k: 844	n:1340000
Cons ci ratio: 4.009529e-03	ci left: 4.155002e-01	ci right 4.171703e-01	k: 557889	n:1340000
KS ci ratio: 1.348095e-01	ci left: 5.880813e-04	ci right 6.738024e-04	k: 844	n:1340000
ETV3   1340000 perm   1028 sec   (1304 perm/sec)   p_kst 6.298507e-04   p_cons 4.163351e-01   p_joint 6.298507e-04

Joint ci ratio: 1.343335e-01	ci left: 5.880199e-04	ci right 6.734053e-04	k: 850	n:1350000
Cons ci ratio: 3.994112e-03	ci left: 4.155690e-01	ci right 4.172329e-01	k: 562141	n:1350000
KS ci ratio: 1.343335e-01	ci left: 5.880199e-04	ci right 6.734053e-04	k: 850	n:1350000
ETV3   1350000 perm   1041 sec   (1297 perm/sec)   p_kst 6.296296e-04   p_cons 4.164007e-01   p_joint 6.296296e-04

Joint ci ratio: 1.333187e-01	ci left: 5.929352e-04	ci right 6.783323e-04	k: 863	n:1360000
Cons ci ratio: 3.978943e-03	ci left: 4.156279e-01	ci right 4.172857e-01	k: 566381	n:1360000
KS ci ratio: 1.333187e-01	ci left: 5.929352e-04	ci right 6.783323e-04	k: 863	n:1360000
ETV3   1360000 perm   1054 sec   (1290 perm/sec)   p_kst 6.345588e-04   p_cons 4.164566e-01   p_joint 6.345588e-04

Joint ci ratio: 1.330880e-01	ci left: 5.907239e-04	ci right 6.756438e-04	k: 866	n:1370000
Cons ci ratio: 3.964356e-03	ci left: 4.156356e-01	ci right 4.172873e-01	k: 570552	n:1370000
KS ci ratio: 1.330880e-01	ci left: 5.907239e-04	ci right 6.756438e-04	k: 866	n:1370000
ETV3   1370000 perm   1068 sec   (1283 perm/sec)   p_kst 6.321168e-04   p_cons 4.164613e-01   p_joint 6.321168e-04

Joint ci ratio: 1.326299e-01	ci left: 5.906466e-04	ci right 6.752400e-04	k: 872	n:1380000
Cons ci ratio: 3.950165e-03	ci left: 4.156143e-01	ci right 4.172600e-01	k: 574683	n:1380000
KS ci ratio: 1.326299e-01	ci left: 5.906466e-04	ci right 6.752400e-04	k: 872	n:1380000
ETV3   1380000 perm   1081 sec   (1276 perm/sec)   p_kst 6.318841e-04   p_cons 4.164370e-01   p_joint 6.318841e-04

Joint ci ratio: 1.322518e-01	ci left: 5.898753e-04	ci right 6.740985e-04	k: 877	n:1390000
Cons ci ratio: 3.935571e-03	ci left: 4.156616e-01	ci right 4.173014e-01	k: 578909	n:1390000
KS ci ratio: 1.322518e-01	ci left: 5.898753e-04	ci right 6.740985e-04	k: 877	n:1390000
ETV3   1390000 perm   1095 sec   (1269 perm/sec)   p_kst 6.309353e-04   p_cons 4.164813e-01   p_joint 6.309353e-04

Joint ci ratio: 1.318022e-01	ci left: 5.898061e-04	ci right 6.737107e-04	k: 883	n:1400000
Cons ci ratio: 3.921783e-03	ci left: 4.156282e-01	ci right 4.172621e-01	k: 583023	n:1400000
KS ci ratio: 1.318022e-01	ci left: 5.898061e-04	ci right 6.737107e-04	k: 883	n:1400000
ETV3   1400000 perm   1109 sec   (1263 perm/sec)   p_kst 6.307143e-04   p_cons 4.164450e-01   p_joint 6.307143e-04

Joint ci ratio: 1.314311e-01	ci left: 5.890524e-04	ci right 6.725954e-04	k: 888	n:1410000
Cons ci ratio: 3.907848e-03	ci left: 4.156315e-01	ci right 4.172596e-01	k: 587188	n:1410000
KS ci ratio: 1.314311e-01	ci left: 5.890524e-04	ci right 6.725954e-04	k: 888	n:1410000
ETV3   1410000 perm   1123 sec   (1256 perm/sec)   p_kst 6.297872e-04   p_cons 4.164454e-01   p_joint 6.297872e-04

Joint ci ratio: 1.309166e-01	ci left: 5.896720e-04	ci right 6.729500e-04	k: 895	n:1420000
Cons ci ratio: 3.894659e-03	ci left: 4.155601e-01	ci right 4.171824e-01	k: 591247	n:1420000
KS ci ratio: 1.309166e-01	ci left: 5.896720e-04	ci right 6.729500e-04	k: 895	n:1420000
ETV3   1420000 perm   1137 sec   (1249 perm/sec)   p_kst 6.302817e-04   p_cons 4.163711e-01   p_joint 6.302817e-04

Joint ci ratio: 1.304805e-01	ci left: 5.896070e-04	ci right 6.725770e-04	k: 901	n:1430000
Cons ci ratio: 3.880625e-03	ci left: 4.156121e-01	ci right 4.172288e-01	k: 595481	n:1430000
KS ci ratio: 1.304805e-01	ci left: 5.896070e-04	ci right 6.725770e-04	k: 901	n:1430000
ETV3   1430000 perm   1151 sec   (1242 perm/sec)   p_kst 6.300699e-04   p_cons 4.164203e-01   p_joint 6.300699e-04

Joint ci ratio: 1.298343e-01	ci left: 5.915590e-04	ci right 6.743597e-04	k: 910	n:1440000
Cons ci ratio: 3.867051e-03	ci left: 4.156245e-01	ci right 4.172355e-01	k: 599659	n:1440000
KS ci ratio: 1.298343e-01	ci left: 5.915590e-04	ci right 6.743597e-04	k: 910	n:1440000
ETV3   1440000 perm   1165 sec   (1236 perm/sec)   p_kst 6.319444e-04   p_cons 4.164299e-01   p_joint 6.319444e-04

Joint ci ratio: 1.287780e-01	ci left: 5.974896e-04	ci right 6.803880e-04	k: 925	n:1450000
Cons ci ratio: 3.854039e-03	ci left: 4.155837e-01	ci right 4.171891e-01	k: 603760	n:1450000
KS ci ratio: 1.287780e-01	ci left: 5.974896e-04	ci right 6.803880e-04	k: 925	n:1450000
ETV3   1450000 perm   1179 sec   (1230 perm/sec)   p_kst 6.379310e-04   p_cons 4.163862e-01   p_joint 6.379310e-04

Joint ci ratio: 1.283628e-01	ci left: 5.973747e-04	ci right 6.799696e-04	k: 931	n:1460000
Cons ci ratio: 3.840801e-03	ci left: 4.155886e-01	ci right 4.171885e-01	k: 607927	n:1460000
KS ci ratio: 1.283628e-01	ci left: 5.973747e-04	ci right 6.799696e-04	k: 931	n:1460000
ETV3   1460000 perm   1193 sec   (1224 perm/sec)   p_kst 6.376712e-04   p_cons 4.163884e-01   p_joint 6.376712e-04

Joint ci ratio: 1.278835e-01	ci left: 5.979202e-04	ci right 6.802583e-04	k: 938	n:1470000
Cons ci ratio: 3.827473e-03	ci left: 4.156220e-01	ci right 4.172165e-01	k: 612136	n:1470000
KS ci ratio: 1.278835e-01	ci left: 5.979202e-04	ci right 6.802583e-04	k: 938	n:1470000
ETV3   1470000 perm   1207 sec   (1217 perm/sec)   p_kst 6.380952e-04   p_cons 4.164190e-01   p_joint 6.380952e-04

Joint ci ratio: 1.276120e-01	ci left: 5.964965e-04	ci right 6.784511e-04	k: 942	n:1480000
Cons ci ratio: 3.814314e-03	ci left: 4.156509e-01	ci right 4.172400e-01	k: 616339	n:1480000
KS ci ratio: 1.276120e-01	ci left: 5.964965e-04	ci right 6.784511e-04	k: 942	n:1480000
ETV3   1480000 perm   1222 sec   (1211 perm/sec)   p_kst 6.364865e-04   p_cons 4.164453e-01   p_joint 6.364865e-04

Joint ci ratio: 1.272080e-01	ci left: 5.963916e-04	ci right 6.780528e-04	k: 948	n:1490000
Cons ci ratio: 3.801653e-03	ci left: 4.156331e-01	ci right 4.172169e-01	k: 620473	n:1490000
KS ci ratio: 1.272080e-01	ci left: 5.963916e-04	ci right 6.780528e-04	k: 948	n:1490000
ETV3   1490000 perm   1236 sec   (1206 perm/sec)   p_kst 6.362416e-04   p_cons 4.164248e-01   p_joint 6.362416e-04

Joint ci ratio: 1.267414e-01	ci left: 5.969342e-04	ci right 6.783473e-04	k: 955	n:1500000
Cons ci ratio: 3.788951e-03	ci left: 4.156369e-01	ci right 4.172154e-01	k: 624639	n:1500000
KS ci ratio: 1.267414e-01	ci left: 5.969342e-04	ci right 6.783473e-04	k: 955	n:1500000
ETV3   1500000 perm   1251 sec   (1199 perm/sec)   p_kst 6.366667e-04   p_cons 4.164260e-01   p_joint 6.366667e-04

Joint ci ratio: 1.264113e-01	ci left: 5.961873e-04	ci right 6.772710e-04	k: 960	n:1510000
Cons ci ratio: 3.775891e-03	ci left: 4.157029e-01	ci right 4.172762e-01	k: 628899	n:1510000
KS ci ratio: 1.264113e-01	ci left: 5.961873e-04	ci right 6.772710e-04	k: 960	n:1510000
ETV3   1510000 perm   1265 sec   (1193 perm/sec)   p_kst 6.357616e-04   p_cons 4.164894e-01   p_joint 6.357616e-04

Joint ci ratio: 1.255646e-01	ci left: 6.005482e-04	ci right 6.816372e-04	k: 973	n:1520000
Cons ci ratio: 3.763271e-03	ci left: 4.157286e-01	ci right 4.172967e-01	k: 633099	n:1520000
KS ci ratio: 1.255646e-01	ci left: 6.005482e-04	ci right 6.816372e-04	k: 973	n:1520000
ETV3   1520000 perm   1280 sec   (1187 perm/sec)   p_kst 6.401316e-04   p_cons 4.165125e-01   p_joint 6.401316e-04

Joint ci ratio: 1.251797e-01	ci left: 6.004217e-04	ci right 6.812265e-04	k: 979	n:1530000
Cons ci ratio: 3.750923e-03	ci left: 4.157350e-01	ci right 4.172980e-01	k: 637270	n:1530000
KS ci ratio: 1.251797e-01	ci left: 6.004217e-04	ci right 6.812265e-04	k: 979	n:1530000
ETV3   1530000 perm   1295 sec   (1181 perm/sec)   p_kst 6.398693e-04   p_cons 4.165163e-01   p_joint 6.398693e-04

Joint ci ratio: 1.246718e-01	ci left: 6.015553e-04	ci right 6.821600e-04	k: 987	n:1540000
Cons ci ratio: 3.739040e-03	ci left: 4.156966e-01	ci right 4.172544e-01	k: 641372	n:1540000
KS ci ratio: 1.246718e-01	ci left: 6.015553e-04	ci right 6.821600e-04	k: 987	n:1540000
ETV3   1540000 perm   1310 sec   (1175 perm/sec)   p_kst 6.409091e-04   p_cons 4.164753e-01   p_joint 6.409091e-04

Joint ci ratio: 1.241700e-01	ci left: 6.026750e-04	ci right 6.830808e-04	k: 995	n:1550000
Cons ci ratio: 3.726805e-03	ci left: 4.157192e-01	ci right 4.172720e-01	k: 645568	n:1550000
KS ci ratio: 1.241700e-01	ci left: 6.026750e-04	ci right 6.830808e-04	k: 995	n:1550000
ETV3   1550000 perm   1325 sec   (1169 perm/sec)   p_kst 6.419355e-04   p_cons 4.164955e-01   p_joint 6.419355e-04

Joint ci ratio: 1.237359e-01	ci left: 6.031597e-04	ci right 6.833283e-04	k: 1002	n:1560000
Cons ci ratio: 3.715100e-03	ci left: 4.156878e-01	ci right 4.172356e-01	k: 649680	n:1560000
KS ci ratio: 1.237359e-01	ci left: 6.031597e-04	ci right 6.833283e-04	k: 1002	n:1560000
ETV3   1560000 perm   1340 sec   (1164 perm/sec)   p_kst 6.423077e-04   p_cons 4.164615e-01   p_joint 6.423077e-04

Joint ci ratio: 1.233675e-01	ci left: 6.030215e-04	ci right 6.829156e-04	k: 1008	n:1570000
Cons ci ratio: 3.703170e-03	ci left: 4.157007e-01	ci right 4.172436e-01	k: 653861	n:1570000
KS ci ratio: 1.233675e-01	ci left: 6.030215e-04	ci right 6.829156e-04	k: 1008	n:1570000
ETV3   1570000 perm   1356 sec   (1158 perm/sec)   p_kst 6.420382e-04   p_cons 4.164720e-01   p_joint 6.420382e-04

Joint ci ratio: 1.231238e-01	ci left: 6.016585e-04	ci right 6.812031e-04	k: 1012	n:1580000
Cons ci ratio: 3.691374e-03	ci left: 4.157109e-01	ci right 4.172489e-01	k: 658038	n:1580000
KS ci ratio: 1.231238e-01	ci left: 6.016585e-04	ci right 6.812031e-04	k: 1012	n:1580000
ETV3   1580000 perm   1371 sec   (1152 perm/sec)   p_kst 6.405063e-04   p_cons 4.164797e-01   p_joint 6.405063e-04

Joint ci ratio: 1.228211e-01	ci left: 6.009224e-04	ci right 6.801601e-04	k: 1017	n:1590000
Cons ci ratio: 3.679899e-03	ci left: 4.156933e-01	ci right 4.172265e-01	k: 662171	n:1590000
KS ci ratio: 1.228211e-01	ci left: 6.009224e-04	ci right 6.801601e-04	k: 1017	n:1590000
ETV3   1590000 perm   1387 sec   (1147 perm/sec)   p_kst 6.396226e-04   p_cons 4.164597e-01   p_joint 6.396226e-04

Joint ci ratio: 1.222221e-01	ci left: 6.032251e-04	ci right 6.823505e-04	k: 1027	n:1600000
Cons ci ratio: 3.668271e-03	ci left: 4.157104e-01	ci right 4.172387e-01	k: 666359	n:1600000
KS ci ratio: 1.222221e-01	ci left: 6.032251e-04	ci right 6.823505e-04	k: 1027	n:1600000
ETV3   1600000 perm   1402 sec   (1141 perm/sec)   p_kst 6.418750e-04   p_cons 4.164744e-01   p_joint 6.418750e-04

Joint ci ratio: 1.220443e-01	ci left: 6.012847e-04	ci right 6.800326e-04	k: 1030	n:1610000
Cons ci ratio: 3.657047e-03	ci left: 4.156881e-01	ci right 4.172116e-01	k: 670484	n:1610000
KS ci ratio: 1.220443e-01	ci left: 6.012847e-04	ci right 6.800326e-04	k: 1030	n:1610000
ETV3   1610000 perm   1418 sec   (1136 perm/sec)   p_kst 6.397516e-04   p_cons 4.164497e-01   p_joint 6.397516e-04

Joint ci ratio: 1.216907e-01	ci left: 6.011639e-04	ci right 6.796514e-04	k: 1036	n:1620000
Cons ci ratio: 3.645430e-03	ci left: 4.157321e-01	ci right 4.172509e-01	k: 674716	n:1620000
KS ci ratio: 1.216907e-01	ci left: 6.011639e-04	ci right 6.796514e-04	k: 1036	n:1620000
ETV3   1620000 perm   1433 sec   (1130 perm/sec)   p_kst 6.395062e-04   p_cons 4.164914e-01   p_joint 6.395062e-04

Joint ci ratio: 1.211081e-01	ci left: 6.034245e-04	ci right 6.818029e-04	k: 1046	n:1630000
Cons ci ratio: 3.634308e-03	ci left: 4.157240e-01	ci right 4.172382e-01	k: 678864	n:1630000
KS ci ratio: 1.211081e-01	ci left: 6.034245e-04	ci right 6.818029e-04	k: 1046	n:1630000
ETV3   1630000 perm   1449 sec   (1125 perm/sec)   p_kst 6.417178e-04   p_cons 4.164810e-01   p_joint 6.417178e-04

Joint ci ratio: 1.205908e-01	ci left: 6.050670e-04	ci right 6.832992e-04	k: 1055	n:1640000
Cons ci ratio: 3.622760e-03	ci left: 4.157868e-01	ci right 4.172964e-01	k: 683128	n:1640000
KS ci ratio: 1.205908e-01	ci left: 6.050670e-04	ci right 6.832992e-04	k: 1055	n:1640000
ETV3   1640000 perm   1465 sec   (1120 perm/sec)   p_kst 6.432927e-04   p_cons 4.165415e-01   p_joint 6.432927e-04

Joint ci ratio: 1.203631e-01	ci left: 6.037511e-04	ci right 6.816553e-04	k: 1059	n:1650000
Cons ci ratio: 3.611632e-03	ci left: 4.158070e-01	ci right 4.173121e-01	k: 687323	n:1650000
KS ci ratio: 1.203631e-01	ci left: 6.037511e-04	ci right 6.816553e-04	k: 1059	n:1650000
ETV3   1650000 perm   1481 sec   (1114 perm/sec)   p_kst 6.418182e-04   p_cons 4.165594e-01   p_joint 6.418182e-04

Joint ci ratio: 1.199114e-01	ci left: 6.047885e-04	ci right 6.825129e-04	k: 1067	n:1660000
Cons ci ratio: 3.600517e-03	ci left: 4.158390e-01	ci right 4.173396e-01	k: 691538	n:1660000
KS ci ratio: 1.199114e-01	ci left: 6.047885e-04	ci right 6.825129e-04	k: 1067	n:1660000
ETV3   1660000 perm   1497 sec   (1109 perm/sec)   p_kst 6.427711e-04   p_cons 4.165892e-01   p_joint 6.427711e-04

Joint ci ratio: 1.191329e-01	ci left: 6.092997e-04	ci right 6.870597e-04	k: 1081	n:1670000
Cons ci ratio: 3.589654e-03	ci left: 4.158503e-01	ci right 4.173464e-01	k: 695719	n:1670000
KS ci ratio: 1.191329e-01	ci left: 6.092997e-04	ci right 6.870597e-04	k: 1081	n:1670000
ETV3   1670000 perm   1513 sec   (1104 perm/sec)   p_kst 6.473054e-04   p_cons 4.165982e-01   p_joint 6.473054e-04

Joint ci ratio: 1.186948e-01	ci left: 6.102932e-04	ci right 6.878735e-04	k: 1089	n:1680000
Cons ci ratio: 3.579068e-03	ci left: 4.158371e-01	ci right 4.173287e-01	k: 699859	n:1680000
KS ci ratio: 1.186948e-01	ci left: 6.102932e-04	ci right 6.878735e-04	k: 1089	n:1680000
ETV3   1680000 perm   1529 sec   (1099 perm/sec)   p_kst 6.482143e-04   p_cons 4.165827e-01   p_joint 6.482143e-04

Joint ci ratio: 1.184236e-01	ci left: 6.095529e-04	ci right 6.868495e-04	k: 1094	n:1690000
Cons ci ratio: 3.568450e-03	ci left: 4.158412e-01	ci right 4.173283e-01	k: 704028	n:1690000
KS ci ratio: 1.184236e-01	ci left: 6.095529e-04	ci right 6.868495e-04	k: 1094	n:1690000
ETV3   1690000 perm   1546 sec   (1093 perm/sec)   p_kst 6.473373e-04   p_cons 4.165846e-01   p_joint 6.473373e-04

Joint ci ratio: 1.181542e-01	ci left: 6.088214e-04	ci right 6.858374e-04	k: 1099	n:1700000
Cons ci ratio: 3.557529e-03	ci left: 4.158993e-01	ci right 4.173821e-01	k: 708289	n:1700000
KS ci ratio: 1.181542e-01	ci left: 6.088214e-04	ci right 6.858374e-04	k: 1099	n:1700000
ETV3   1700000 perm   1563 sec   (1088 perm/sec)   p_kst 6.464706e-04   p_cons 4.166406e-01   p_joint 6.464706e-04

Joint ci ratio: 1.177800e-01	ci left: 6.092338e-04	ci right 6.860410e-04	k: 1106	n:1710000
Cons ci ratio: 3.546828e-03	ci left: 4.159404e-01	ci right 4.174189e-01	k: 712522	n:1710000
KS ci ratio: 1.177800e-01	ci left: 6.092338e-04	ci right 6.860410e-04	k: 1106	n:1710000
ETV3   1710000 perm   1579 sec   (1083 perm/sec)   p_kst 6.467836e-04   p_cons 4.166795e-01   p_joint 6.467836e-04

Joint ci ratio: 1.174621e-01	ci left: 6.090775e-04	ci right 6.856433e-04	k: 1112	n:1720000
Cons ci ratio: 3.536683e-03	ci left: 4.159177e-01	ci right 4.173919e-01	k: 716646	n:1720000
KS ci ratio: 1.174621e-01	ci left: 6.090775e-04	ci right 6.856433e-04	k: 1112	n:1720000
ETV3   1720000 perm   1596 sec   (1078 perm/sec)   p_kst 6.465116e-04   p_cons 4.166547e-01   p_joint 6.465116e-04

Joint ci ratio: 1.171468e-01	ci left: 6.089233e-04	ci right 6.852500e-04	k: 1118	n:1730000
Cons ci ratio: 3.526424e-03	ci left: 4.159230e-01	ci right 4.173929e-01	k: 720818	n:1730000
KS ci ratio: 1.171468e-01	ci left: 6.089233e-04	ci right 6.852500e-04	k: 1118	n:1730000
ETV3   1730000 perm   1613 sec   (1073 perm/sec)   p_kst 6.462428e-04   p_cons 4.166578e-01   p_joint 6.462428e-04

Joint ci ratio: 1.167302e-01	ci left: 6.098869e-04	ci right 6.860439e-04	k: 1126	n:1740000
Cons ci ratio: 3.516087e-03	ci left: 4.159512e-01	ci right 4.174169e-01	k: 725030	n:1740000
KS ci ratio: 1.167302e-01	ci left: 6.098869e-04	ci right 6.860439e-04	k: 1126	n:1740000
ETV3   1740000 perm   1630 sec   (1068 perm/sec)   p_kst 6.471264e-04   p_cons 4.166839e-01   p_joint 6.471264e-04

Joint ci ratio: 1.164722e-01	ci left: 6.091757e-04	ci right 6.850641e-04	k: 1131	n:1750000
Cons ci ratio: 3.506413e-03	ci left: 4.158997e-01	ci right 4.173611e-01	k: 729103	n:1750000
KS ci ratio: 1.164722e-01	ci left: 6.091757e-04	ci right 6.850641e-04	k: 1131	n:1750000
ETV3   1750000 perm   1647 sec   (1063 perm/sec)   p_kst 6.462857e-04   p_cons 4.166303e-01   p_joint 6.462857e-04

Joint ci ratio: 1.160118e-01	ci left: 6.106794e-04	ci right 6.864339e-04	k: 1140	n:1760000
Cons ci ratio: 3.496889e-03	ci left: 4.158391e-01	ci right 4.172964e-01	k: 733159	n:1760000
KS ci ratio: 1.160118e-01	ci left: 6.106794e-04	ci right 6.864339e-04	k: 1140	n:1760000
ETV3   1760000 perm   1664 sec   (1058 perm/sec)   p_kst 6.477273e-04   p_cons 4.165676e-01   p_joint 6.477273e-04

Joint ci ratio: 1.155569e-01	ci left: 6.121668e-04	ci right 6.877876e-04	k: 1149	n:1770000
Cons ci ratio: 3.486918e-03	ci left: 4.158521e-01	ci right 4.173052e-01	k: 737344	n:1770000
KS ci ratio: 1.155569e-01	ci left: 6.121668e-04	ci right 6.877876e-04	k: 1149	n:1770000
ETV3   1770000 perm   1681 sec   (1053 perm/sec)   p_kst 6.491525e-04   p_cons 4.165785e-01   p_joint 6.491525e-04

Joint ci ratio: 1.152566e-01	ci left: 6.120011e-04	ci right 6.873917e-04	k: 1155	n:1780000
Cons ci ratio: 3.476916e-03	ci left: 4.158812e-01	ci right 4.173303e-01	k: 741558	n:1780000
KS ci ratio: 1.152566e-01	ci left: 6.120011e-04	ci right 6.873917e-04	k: 1155	n:1780000
ETV3   1780000 perm   1698 sec   (1048 perm/sec)   p_kst 6.488764e-04   p_cons 4.166056e-01   p_joint 6.488764e-04

Joint ci ratio: 1.148598e-01	ci left: 6.129228e-04	ci right 6.881494e-04	k: 1163	n:1790000
Cons ci ratio: 3.467378e-03	ci left: 4.158570e-01	ci right 4.173019e-01	k: 745677	n:1790000
KS ci ratio: 1.148598e-01	ci left: 6.129228e-04	ci right 6.881494e-04	k: 1163	n:1790000
ETV3   1790000 perm   1716 sec   (1043 perm/sec)   p_kst 6.497207e-04   p_cons 4.165793e-01   p_joint 6.497207e-04

Joint ci ratio: 1.143695e-01	ci left: 6.149140e-04	ci right 6.900410e-04	k: 1173	n:1800000
Cons ci ratio: 3.457965e-03	ci left: 4.158263e-01	ci right 4.172673e-01	k: 749784	n:1800000
KS ci ratio: 1.143695e-01	ci left: 6.149140e-04	ci right 6.900410e-04	k: 1173	n:1800000
ETV3   1800000 perm   1733 sec   (1039 perm/sec)   p_kst 6.516667e-04   p_cons 4.165467e-01   p_joint 6.516667e-04

Joint ci ratio: 1.140300e-01	ci left: 6.152736e-04	ci right 6.902064e-04	k: 1180	n:1810000
Cons ci ratio: 3.448476e-03	ci left: 4.158176e-01	ci right 4.172545e-01	k: 753930	n:1810000
KS ci ratio: 1.140300e-01	ci left: 6.152736e-04	ci right 6.902064e-04	k: 1180	n:1810000
ETV3   1810000 perm   1750 sec   (1034 perm/sec)   p_kst 6.519337e-04   p_cons 4.165359e-01   p_joint 6.519337e-04

Joint ci ratio: 1.135979e-01	ci left: 6.166973e-04	ci right 6.914998e-04	k: 1189	n:1820000
Cons ci ratio: 3.438905e-03	ci left: 4.158314e-01	ci right 4.172644e-01	k: 758117	n:1820000
KS ci ratio: 1.135979e-01	ci left: 6.166973e-04	ci right 6.914998e-04	k: 1189	n:1820000
ETV3   1820000 perm   1768 sec   (1029 perm/sec)   p_kst 6.532967e-04   p_cons 4.165478e-01   p_joint 6.532967e-04

Joint ci ratio: 1.132180e-01	ci left: 6.175750e-04	ci right 6.922167e-04	k: 1197	n:1830000
Cons ci ratio: 3.429814e-03	ci left: 4.157883e-01	ci right 4.172174e-01	k: 762200	n:1830000
KS ci ratio: 1.132180e-01	ci left: 6.175750e-04	ci right 6.922167e-04	k: 1197	n:1830000
ETV3   1830000 perm   1786 sec   (1025 perm/sec)   p_kst 6.540984e-04   p_cons 4.165027e-01   p_joint 6.540984e-04

Joint ci ratio: 1.128418e-01	ci left: 6.184435e-04	ci right 6.929253e-04	k: 1205	n:1840000
Cons ci ratio: 3.420042e-03	ci left: 4.158528e-01	ci right 4.172779e-01	k: 766480	n:1840000
KS ci ratio: 1.128418e-01	ci left: 6.184435e-04	ci right 6.929253e-04	k: 1205	n:1840000
ETV3   1840000 perm   1803 sec   (1020 perm/sec)   p_kst 6.548913e-04   p_cons 4.165652e-01   p_joint 6.548913e-04

Joint ci ratio: 1.123305e-01	ci left: 6.208791e-04	ci right 6.952930e-04	k: 1216	n:1850000
Cons ci ratio: 3.410451e-03	ci left: 4.159024e-01	ci right 4.173238e-01	k: 770734	n:1850000
KS ci ratio: 1.123305e-01	ci left: 6.208791e-04	ci right 6.952930e-04	k: 1216	n:1850000
ETV3   1850000 perm   1821 sec   (1016 perm/sec)   p_kst 6.572973e-04   p_cons 4.166130e-01   p_joint 6.572973e-04

Joint ci ratio: 1.121924e-01	ci left: 6.191086e-04	ci right 6.932131e-04	k: 1219	n:1860000
Cons ci ratio: 3.401034e-03	ci left: 4.159381e-01	ci right 4.173557e-01	k: 774963	n:1860000
KS ci ratio: 1.121924e-01	ci left: 6.191086e-04	ci right 6.932131e-04	k: 1219	n:1860000
ETV3   1860000 perm   1839 sec   (1012 perm/sec)   p_kst 6.553763e-04   p_cons 4.166468e-01   p_joint 6.553763e-04

Joint ci ratio: 1.119176e-01	ci left: 6.189165e-04	ci right 6.928045e-04	k: 1225	n:1870000
Cons ci ratio: 3.391952e-03	ci left: 4.159366e-01	ci right 4.173503e-01	k: 779123	n:1870000
KS ci ratio: 1.119176e-01	ci left: 6.189165e-04	ci right 6.928045e-04	k: 1225	n:1870000
ETV3   1870000 perm   1857 sec   (1007 perm/sec)   p_kst 6.550802e-04   p_cons 4.166433e-01   p_joint 6.550802e-04

Joint ci ratio: 1.115542e-01	ci left: 6.197608e-04	ci right 6.934936e-04	k: 1233	n:1880000
Cons ci ratio: 3.382902e-03	ci left: 4.159409e-01	ci right 4.173509e-01	k: 783294	n:1880000
KS ci ratio: 1.115542e-01	ci left: 6.197608e-04	ci right 6.934936e-04	k: 1233	n:1880000
ETV3   1880000 perm   1875 sec   (1003 perm/sec)   p_kst 6.558511e-04   p_cons 4.166457e-01   p_joint 6.558511e-04

Joint ci ratio: 1.111495e-01	ci left: 6.211110e-04	ci right 6.947187e-04	k: 1242	n:1890000
Cons ci ratio: 3.374100e-03	ci left: 4.159198e-01	ci right 4.173260e-01	k: 787417	n:1890000
KS ci ratio: 1.111495e-01	ci left: 6.211110e-04	ci right 6.947187e-04	k: 1242	n:1890000
ETV3   1890000 perm   1893 sec   (998 perm/sec)   p_kst 6.571429e-04   p_cons 4.166228e-01   p_joint 6.571429e-04

Joint ci ratio: 1.108822e-01	ci left: 6.209122e-04	ci right 6.943079e-04	k: 1248	n:1900000
Cons ci ratio: 3.365258e-03	ci left: 4.159147e-01	ci right 4.173172e-01	k: 791570	n:1900000
KS ci ratio: 1.108822e-01	ci left: 6.209122e-04	ci right 6.943079e-04	k: 1248	n:1900000
ETV3   1900000 perm   1911 sec   (994 perm/sec)   p_kst 6.568421e-04   p_cons 4.166158e-01   p_joint 6.568421e-04

Joint ci ratio: 1.105288e-01	ci left: 6.217338e-04	ci right 6.949772e-04	k: 1256	n:1910000
Cons ci ratio: 3.356394e-03	ci left: 4.159227e-01	ci right 4.173215e-01	k: 795748	n:1910000
KS ci ratio: 1.105288e-01	ci left: 6.217338e-04	ci right 6.949772e-04	k: 1256	n:1910000
ETV3   1910000 perm   1930 sec   (990 perm/sec)   p_kst 6.575916e-04   p_cons 4.166220e-01   p_joint 6.575916e-04

Joint ci ratio: 1.102659e-01	ci left: 6.215344e-04	ci right 6.945687e-04	k: 1262	n:1920000
Cons ci ratio: 3.347743e-03	ci left: 4.159098e-01	ci right 4.173050e-01	k: 799886	n:1920000
KS ci ratio: 1.102659e-01	ci left: 6.215344e-04	ci right 6.945687e-04	k: 1262	n:1920000
ETV3   1920000 perm   1949 sec   (985 perm/sec)   p_kst 6.572917e-04   p_cons 4.166073e-01   p_joint 6.572917e-04

Joint ci ratio: 1.100918e-01	ci left: 6.203294e-04	ci right 6.930996e-04	k: 1266	n:1930000
Cons ci ratio: 3.339333e-03	ci left: 4.158717e-01	ci right 4.172633e-01	k: 803975	n:1930000
KS ci ratio: 1.100918e-01	ci left: 6.203294e-04	ci right 6.930996e-04	k: 1266	n:1930000
ETV3   1930000 perm   1968 sec   (981 perm/sec)   p_kst 6.559585e-04   p_cons 4.165674e-01   p_joint 6.559585e-04

Joint ci ratio: 1.098753e-01	ci left: 6.196382e-04	ci right 6.921751e-04	k: 1271	n:1940000
Cons ci ratio: 3.330594e-03	ci left: 4.158912e-01	ci right 4.172792e-01	k: 808175	n:1940000
KS ci ratio: 1.098753e-01	ci left: 6.196382e-04	ci right 6.921751e-04	k: 1271	n:1940000
ETV3   1940000 perm   1986 sec   (977 perm/sec)   p_kst 6.551546e-04   p_cons 4.165851e-01   p_joint 6.551546e-04

Joint ci ratio: 1.097030e-01	ci left: 6.184555e-04	ci right 6.907331e-04	k: 1275	n:1950000
Cons ci ratio: 3.322029e-03	ci left: 4.158951e-01	ci right 4.172795e-01	k: 812345	n:1950000
KS ci ratio: 1.097030e-01	ci left: 6.184555e-04	ci right 6.907331e-04	k: 1275	n:1950000
ETV3   1950000 perm   2005 sec   (973 perm/sec)   p_kst 6.538462e-04   p_cons 4.165872e-01   p_joint 6.538462e-04

Joint ci ratio: 1.093607e-01	ci left: 6.192700e-04	ci right 6.914024e-04	k: 1283	n:1960000
Cons ci ratio: 3.313661e-03	ci left: 4.158796e-01	ci right 4.172604e-01	k: 816477	n:1960000
KS ci ratio: 1.093607e-01	ci left: 6.192700e-04	ci right 6.914024e-04	k: 1283	n:1960000
ETV3   1960000 perm   2024 sec   (969 perm/sec)   p_kst 6.545918e-04   p_cons 4.165699e-01   p_joint 6.545918e-04

Joint ci ratio: 1.090638e-01	ci left: 6.195827e-04	ci right 6.915430e-04	k: 1290	n:1970000
Cons ci ratio: 3.305001e-03	ci left: 4.159165e-01	ci right 4.172939e-01	k: 820712	n:1970000
KS ci ratio: 1.090638e-01	ci left: 6.195827e-04	ci right 6.915430e-04	k: 1290	n:1970000
ETV3   1970000 perm   2042 sec   (965 perm/sec)   p_kst 6.548223e-04   p_cons 4.166051e-01   p_joint 6.548223e-04

Joint ci ratio: 1.086855e-01	ci left: 6.208752e-04	ci right 6.927195e-04	k: 1299	n:1980000
Cons ci ratio: 3.296706e-03	ci left: 4.159091e-01	ci right 4.172830e-01	k: 824860	n:1980000
KS ci ratio: 1.086855e-01	ci left: 6.208752e-04	ci right 6.927195e-04	k: 1299	n:1980000
ETV3   1980000 perm   2061 sec   (961 perm/sec)   p_kst 6.560606e-04   p_cons 4.165960e-01   p_joint 6.560606e-04

Joint ci ratio: 1.084771e-01	ci left: 6.201995e-04	ci right 6.918193e-04	k: 1304	n:1990000
Cons ci ratio: 3.288137e-03	ci left: 4.159516e-01	ci right 4.173220e-01	k: 829107	n:1990000
KS ci ratio: 1.084771e-01	ci left: 6.201995e-04	ci right 6.918193e-04	k: 1304	n:1990000
ETV3   1990000 perm   2080 sec   (957 perm/sec)   p_kst 6.552764e-04   p_cons 4.166367e-01   p_joint 6.552764e-04

Joint ci ratio: 1.082286e-01	ci left: 6.200172e-04	ci right 6.914415e-04	k: 1310	n:2000000
Cons ci ratio: 3.279861e-03	ci left: 4.159601e-01	ci right 4.173271e-01	k: 833287	n:2000000
KS ci ratio: 1.082286e-01	ci left: 6.200172e-04	ci right 6.914415e-04	k: 1310	n:2000000
ETV3   2000000 perm   2100 sec   (953 perm/sec)   p_kst 6.550000e-04   p_cons 4.166435e-01   p_joint 6.550000e-04

Joint ci ratio: 1.080640e-01	ci left: 6.188688e-04	ci right 6.900454e-04	k: 1314	n:2010000
Cons ci ratio: 3.271760e-03	ci left: 4.159517e-01	ci right 4.173153e-01	k: 837433	n:2010000
KS ci ratio: 1.080640e-01	ci left: 6.188688e-04	ci right 6.900454e-04	k: 1314	n:2010000
ETV3   2010000 perm   2119 sec   (949 perm/sec)   p_kst 6.537313e-04   p_cons 4.166333e-01   p_joint 6.537313e-04

Joint ci ratio: 1.078592e-01	ci left: 6.182135e-04	ci right 6.891714e-04	k: 1319	n:2020000
Cons ci ratio: 3.263659e-03	ci left: 4.159522e-01	ci right 4.173124e-01	k: 841597	n:2020000
KS ci ratio: 1.078592e-01	ci left: 6.182135e-04	ci right 6.891714e-04	k: 1319	n:2020000
ETV3   2020000 perm   2138 sec   (945 perm/sec)   p_kst 6.529703e-04   p_cons 4.166322e-01   p_joint 6.529703e-04

Joint ci ratio: 1.076962e-01	ci left: 6.170854e-04	ci right 6.878000e-04	k: 1323	n:2030000
Cons ci ratio: 3.255830e-03	ci left: 4.159212e-01	ci right 4.172780e-01	k: 845697	n:2030000
KS ci ratio: 1.076962e-01	ci left: 6.170854e-04	ci right 6.878000e-04	k: 1323	n:2030000
ETV3   2030000 perm   2157 sec   (941 perm/sec)   p_kst 6.517241e-04   p_cons 4.165995e-01   p_joint 6.517241e-04

Joint ci ratio: 1.074934e-01	ci left: 6.164455e-04	ci right 6.869454e-04	k: 1328	n:2040000
Cons ci ratio: 3.247820e-03	ci left: 4.159258e-01	ci right 4.172793e-01	k: 849869	n:2040000
KS ci ratio: 1.074934e-01	ci left: 6.164455e-04	ci right 6.869454e-04	k: 1328	n:2040000
ETV3   2040000 perm   2176 sec   (937 perm/sec)   p_kst 6.509804e-04   p_cons 4.166025e-01   p_joint 6.509804e-04

Joint ci ratio: 1.072918e-01	ci left: 6.158119e-04	ci right 6.860989e-04	k: 1333	n:2050000
Cons ci ratio: 3.239840e-03	ci left: 4.159348e-01	ci right 4.172850e-01	k: 854050	n:2050000
KS ci ratio: 1.072918e-01	ci left: 6.158119e-04	ci right 6.860989e-04	k: 1333	n:2050000
ETV3   2050000 perm   2195 sec   (934 perm/sec)   p_kst 6.502439e-04   p_cons 4.166098e-01   p_joint 6.502439e-04

Joint ci ratio: 1.070914e-01	ci left: 6.151846e-04	ci right 6.852606e-04	k: 1338	n:2060000
Cons ci ratio: 3.232035e-03	ci left: 4.159262e-01	ci right 4.172731e-01	k: 858195	n:2060000
KS ci ratio: 1.070914e-01	ci left: 6.151846e-04	ci right 6.852606e-04	k: 1338	n:2060000
ETV3   2060000 perm   2215 sec   (930 perm/sec)   p_kst 6.495146e-04   p_cons 4.165995e-01   p_joint 6.495146e-04

Joint ci ratio: 1.068920e-01	ci left: 6.145635e-04	ci right 6.844303e-04	k: 1343	n:2070000
Cons ci ratio: 3.224363e-03	ci left: 4.159061e-01	ci right 4.172497e-01	k: 862316	n:2070000
KS ci ratio: 1.068920e-01	ci left: 6.145635e-04	ci right 6.844303e-04	k: 1343	n:2070000
ETV3   2070000 perm   2234 sec   (927 perm/sec)   p_kst 6.487923e-04   p_cons 4.165778e-01   p_joint 6.487923e-04

Joint ci ratio: 1.066147e-01	ci left: 6.148844e-04	ci right 6.845949e-04	k: 1350	n:2080000
Cons ci ratio: 3.216682e-03	ci left: 4.158958e-01	ci right 4.172362e-01	k: 866457	n:2080000
KS ci ratio: 1.066147e-01	ci left: 6.148844e-04	ci right 6.845949e-04	k: 1350	n:2080000
ETV3   2080000 perm   2253 sec   (923 perm/sec)   p_kst 6.490385e-04   p_cons 4.165659e-01   p_joint 6.490385e-04

Joint ci ratio: 1.063004e-01	ci left: 6.156683e-04	ci right 6.852490e-04	k: 1358	n:2090000
Cons ci ratio: 3.208733e-03	ci left: 4.159344e-01	ci right 4.172716e-01	k: 870700	n:2090000
KS ci ratio: 1.063004e-01	ci left: 6.156683e-04	ci right 6.852490e-04	k: 1358	n:2090000
ETV3   2090000 perm   2273 sec   (919 perm/sec)   p_kst 6.497608e-04   p_cons 4.166029e-01   p_joint 6.497608e-04

Joint ci ratio: 1.059501e-01	ci left: 6.169085e-04	ci right 6.863853e-04	k: 1367	n:2100000
Cons ci ratio: 3.201542e-03	ci left: 4.158664e-01	ci right 4.172004e-01	k: 874720	n:2100000
KS ci ratio: 1.059501e-01	ci left: 6.169085e-04	ci right 6.863853e-04	k: 1367	n:2100000
ETV3   2100000 perm   2294 sec   (916 perm/sec)   p_kst 6.509524e-04   p_cons 4.165333e-01   p_joint 6.509524e-04

Joint ci ratio: 1.057956e-01	ci left: 6.158303e-04	ci right 6.850782e-04	k: 1371	n:2110000
Cons ci ratio: 3.193792e-03	ci left: 4.158916e-01	ci right 4.172224e-01	k: 878935	n:2110000
KS ci ratio: 1.057956e-01	ci left: 6.158303e-04	ci right 6.850782e-04	k: 1371	n:2110000
ETV3   2110000 perm   2316 sec   (911 perm/sec)   p_kst 6.497630e-04   p_cons 4.165569e-01   p_joint 6.497630e-04

Joint ci ratio: 1.054121e-01	ci left: 6.175178e-04	ci right 6.866882e-04	k: 1381	n:2120000
Cons ci ratio: 3.186128e-03	ci left: 4.159117e-01	ci right 4.172394e-01	k: 883140	n:2120000
KS ci ratio: 1.054121e-01	ci left: 6.175178e-04	ci right 6.866882e-04	k: 1381	n:2120000
ETV3   2120000 perm   2335 sec   (908 perm/sec)   p_kst 6.514151e-04   p_cons 4.165755e-01   p_joint 6.514151e-04

Joint ci ratio: 1.050704e-01	ci left: 6.187328e-04	ci right 6.878008e-04	k: 1390	n:2130000
Cons ci ratio: 3.178667e-03	ci left: 4.159092e-01	ci right 4.172338e-01	k: 887297	n:2130000
KS ci ratio: 1.050704e-01	ci left: 6.187328e-04	ci right 6.878008e-04	k: 1390	n:2130000
ETV3   2130000 perm   2355 sec   (905 perm/sec)   p_kst 6.525822e-04   p_cons 4.165714e-01   p_joint 6.525822e-04

Joint ci ratio: 1.048070e-01	ci left: 6.190268e-04	ci right 6.879436e-04	k: 1397	n:2140000
Cons ci ratio: 3.171051e-03	ci left: 4.159384e-01	ci right 4.172599e-01	k: 891522	n:2140000
KS ci ratio: 1.048070e-01	ci left: 6.190268e-04	ci right 6.879436e-04	k: 1397	n:2140000
ETV3   2140000 perm   2375 sec   (901 perm/sec)   p_kst 6.528037e-04   p_cons 4.165991e-01   p_joint 6.528037e-04

Joint ci ratio: 1.045829e-01	ci left: 6.188652e-04	ci right 6.876076e-04	k: 1403	n:2150000
Cons ci ratio: 3.163774e-03	ci left: 4.159237e-01	ci right 4.172421e-01	k: 895653	n:2150000
KS ci ratio: 1.045829e-01	ci left: 6.188652e-04	ci right 6.876076e-04	k: 1403	n:2150000
ETV3   2150000 perm   2396 sec   (897 perm/sec)   p_kst 6.525581e-04   p_cons 4.165828e-01   p_joint 6.525581e-04

Joint ci ratio: 1.042123e-01	ci left: 6.205088e-04	ci right 6.891747e-04	k: 1413	n:2160000
Cons ci ratio: 3.156507e-03	ci left: 4.159151e-01	ci right 4.172305e-01	k: 899797	n:2160000
KS ci ratio: 1.042123e-01	ci left: 6.205088e-04	ci right 6.891747e-04	k: 1413	n:2160000
ETV3   2160000 perm   2416 sec   (894 perm/sec)   p_kst 6.541667e-04   p_cons 4.165727e-01   p_joint 6.541667e-04

Joint ci ratio: 1.039553e-01	ci left: 6.207912e-04	ci right 6.893085e-04	k: 1420	n:2170000
Cons ci ratio: 3.149213e-03	ci left: 4.159186e-01	ci right 4.172309e-01	k: 903967	n:2170000
KS ci ratio: 1.039553e-01	ci left: 6.207912e-04	ci right 6.893085e-04	k: 1420	n:2170000
ETV3   2170000 perm   2437 sec   (890 perm/sec)   p_kst 6.543779e-04   p_cons 4.165747e-01   p_joint 6.543779e-04

Joint ci ratio: 1.037365e-01	ci left: 6.206243e-04	ci right 6.889703e-04	k: 1426	n:2180000
Cons ci ratio: 3.141768e-03	ci left: 4.159532e-01	ci right 4.172626e-01	k: 908205	n:2180000
KS ci ratio: 1.037365e-01	ci left: 6.206243e-04	ci right 6.889703e-04	k: 1426	n:2180000
ETV3   2180000 perm   2458 sec   (887 perm/sec)   p_kst 6.541284e-04   p_cons 4.166078e-01   p_joint 6.541284e-04

Joint ci ratio: 1.033389e-01	ci left: 6.226832e-04	ci right 6.909771e-04	k: 1437	n:2190000
Cons ci ratio: 3.134507e-03	ci left: 4.159670e-01	ci right 4.172734e-01	k: 912398	n:2190000
KS ci ratio: 1.033389e-01	ci left: 6.226832e-04	ci right 6.909771e-04	k: 1437	n:2190000
ETV3   2190000 perm   2478 sec   (884 perm/sec)   p_kst 6.561644e-04   p_cons 4.166201e-01   p_joint 6.561644e-04

Joint ci ratio: 1.030526e-01	ci left: 6.233954e-04	ci right 6.915665e-04	k: 1445	n:2200000
Cons ci ratio: 3.127320e-03	ci left: 4.159771e-01	ci right 4.172804e-01	k: 916583	n:2200000
KS ci ratio: 1.030526e-01	ci left: 6.233954e-04	ci right 6.915665e-04	k: 1445	n:2200000
ETV3   2200000 perm   2500 sec   (880 perm/sec)   p_kst 6.568182e-04   p_cons 4.166286e-01   p_joint 6.568182e-04

Joint ci ratio: 1.028750e-01	ci left: 6.227788e-04	ci right 6.907579e-04	k: 1450	n:2210000
Cons ci ratio: 3.120200e-03	ci left: 4.159843e-01	ci right 4.172847e-01	k: 920762	n:2210000
KS ci ratio: 1.028750e-01	ci left: 6.227788e-04	ci right 6.907579e-04	k: 1450	n:2210000
ETV3   2210000 perm   2521 sec   (877 perm/sec)   p_kst 6.561086e-04   p_cons 4.166344e-01   p_joint 6.561086e-04

Joint ci ratio: 1.025573e-01	ci left: 6.239234e-04	ci right 6.918046e-04	k: 1459	n:2220000
Cons ci ratio: 3.113177e-03	ci left: 4.159838e-01	ci right 4.172813e-01	k: 924924	n:2220000
KS ci ratio: 1.025573e-01	ci left: 6.239234e-04	ci right 6.918046e-04	k: 1459	n:2220000
ETV3   2220000 perm   2542 sec   (873 perm/sec)   p_kst 6.572072e-04   p_cons 4.166324e-01   p_joint 6.572072e-04

Joint ci ratio: 1.023123e-01	ci left: 6.241841e-04	ci right 6.919217e-04	k: 1466	n:2230000
Cons ci ratio: 3.106130e-03	ci left: 4.159945e-01	ci right 4.172891e-01	k: 929111	n:2230000
KS ci ratio: 1.023123e-01	ci left: 6.241841e-04	ci right 6.919217e-04	k: 1466	n:2230000
ETV3   2230000 perm   2563 sec   (870 perm/sec)   p_kst 6.573991e-04   p_cons 4.166417e-01   p_joint 6.573991e-04

Joint ci ratio: 1.022080e-01	ci left: 6.227026e-04	ci right 6.902063e-04	k: 1469	n:2240000
Cons ci ratio: 3.099298e-03	ci left: 4.159788e-01	ci right 4.172705e-01	k: 933239	n:2240000
KS ci ratio: 1.022080e-01	ci left: 6.227026e-04	ci right 6.902063e-04	k: 1469	n:2240000
ETV3   2240000 perm   2586 sec   (866 perm/sec)   p_kst 6.558036e-04   p_cons 4.166246e-01   p_joint 6.558036e-04

Joint ci ratio: 1.021039e-01	ci left: 6.212343e-04	ci right 6.885062e-04	k: 1472	n:2250000
Cons ci ratio: 3.092285e-03	ci left: 4.159988e-01	ci right 4.172876e-01	k: 937447	n:2250000
KS ci ratio: 1.021039e-01	ci left: 6.212343e-04	ci right 6.885062e-04	k: 1472	n:2250000
ETV3   2250000 perm   2608 sec   (863 perm/sec)   p_kst 6.542222e-04   p_cons 4.166431e-01   p_joint 6.542222e-04

Joint ci ratio: 1.019311e-01	ci left: 6.206414e-04	ci right 6.877285e-04	k: 1477	n:2260000
Cons ci ratio: 3.085482e-03	ci left: 4.159930e-01	ci right 4.172789e-01	k: 941597	n:2260000
KS ci ratio: 1.019311e-01	ci left: 6.206414e-04	ci right 6.877285e-04	k: 1477	n:2260000
ETV3   2260000 perm   2631 sec   (859 perm/sec)   p_kst 6.535398e-04   p_cons 4.166358e-01   p_joint 6.535398e-04

Joint ci ratio: 1.015538e-01	ci left: 6.226298e-04	ci right 6.896679e-04	k: 1488	n:2270000
Cons ci ratio: 3.078657e-03	ci left: 4.159978e-01	ci right 4.172809e-01	k: 945771	n:2270000
KS ci ratio: 1.015538e-01	ci left: 6.226298e-04	ci right 6.896679e-04	k: 1488	n:2270000
ETV3   2270000 perm   2652 sec   (856 perm/sec)   p_kst 6.555066e-04   p_cons 4.166392e-01   p_joint 6.555066e-04

Joint ci ratio: 1.012144e-01	ci left: 6.241738e-04	ci right 6.911401e-04	k: 1498	n:2280000
Cons ci ratio: 3.072032e-03	ci left: 4.159779e-01	ci right 4.172582e-01	k: 949889	n:2280000
KS ci ratio: 1.012144e-01	ci left: 6.241738e-04	ci right 6.911401e-04	k: 1498	n:2280000
ETV3   2280000 perm   2674 sec   (853 perm/sec)   p_kst 6.570175e-04   p_cons 4.166180e-01   p_joint 6.570175e-04

Joint ci ratio: 1.010461e-01	ci left: 6.235763e-04	ci right 6.903607e-04	k: 1503	n:2290000
Cons ci ratio: 3.065318e-03	ci left: 4.159793e-01	ci right 4.172567e-01	k: 954055	n:2290000
KS ci ratio: 1.010461e-01	ci left: 6.235763e-04	ci right 6.903607e-04	k: 1503	n:2290000
ETV3   2290000 perm   2696 sec   (850 perm/sec)   p_kst 6.563319e-04   p_cons 4.166179e-01   p_joint 6.563319e-04

Joint ci ratio: 1.009455e-01	ci left: 6.221365e-04	ci right 6.886964e-04	k: 1506	n:2300000
Cons ci ratio: 3.058508e-03	ci left: 4.160028e-01	ci right 4.172775e-01	k: 958272	n:2300000
KS ci ratio: 1.009455e-01	ci left: 6.221365e-04	ci right 6.886964e-04	k: 1506	n:2300000
ETV3   2300000 perm   2717 sec   (846 perm/sec)   p_kst 6.547826e-04   p_cons 4.166400e-01   p_joint 6.547826e-04

Joint ci ratio: 1.006786e-01	ci left: 6.228191e-04	ci right 6.892655e-04	k: 1514	n:2310000
Cons ci ratio: 3.051692e-03	ci left: 4.160343e-01	ci right 4.173062e-01	k: 962508	n:2310000
KS ci ratio: 1.006786e-01	ci left: 6.228191e-04	ci right 6.892655e-04	k: 1514	n:2310000
ETV3   2310000 perm   2740 sec   (843 perm/sec)   p_kst 6.554113e-04   p_cons 4.166701e-01   p_joint 6.554113e-04

Joint ci ratio: 1.005129e-01	ci left: 6.222355e-04	ci right 6.885040e-04	k: 1519	n:2320000
Cons ci ratio: 3.044912e-03	ci left: 4.160668e-01	ci right 4.173360e-01	k: 966747	n:2320000
KS ci ratio: 1.005129e-01	ci left: 6.222355e-04	ci right 6.885040e-04	k: 1519	n:2320000
ETV3   2320000 perm   2762 sec   (840 perm/sec)   p_kst 6.547414e-04   p_cons 4.167013e-01   p_joint 6.547414e-04

Joint ci ratio: 1.003151e-01	ci left: 6.220754e-04	ci right 6.881888e-04	k: 1525	n:2330000
Cons ci ratio: 3.038251e-03	ci left: 4.160875e-01	ci right 4.173540e-01	k: 970959	n:2330000
KS ci ratio: 1.003151e-01	ci left: 6.220754e-04	ci right 6.881888e-04	k: 1525	n:2330000
ETV3   2330000 perm   2784 sec   (837 perm/sec)   p_kst 6.545064e-04   p_cons 4.167206e-01   p_joint 6.545064e-04

Joint ci ratio: 1.001840e-01	ci left: 6.210835e-04	ci right 6.870001e-04	k: 1529	n:2340000
Cons ci ratio: 3.031744e-03	ci left: 4.160900e-01	ci right 4.173538e-01	k: 975129	n:2340000
KS ci ratio: 1.001840e-01	ci left: 6.210835e-04	ci right 6.870001e-04	k: 1529	n:2340000
ETV3   2340000 perm   2805 sec   (834 perm/sec)   p_kst 6.534188e-04   p_cons 4.167218e-01   p_joint 6.534188e-04

Joint ci ratio: 9.998812e-02	ci left: 6.209299e-04	ci right 6.866937e-04	k: 1535	n:2350000
Cons ci ratio: 3.025616e-03	ci left: 4.160385e-01	ci right 4.172996e-01	k: 979172	n:2350000
KS ci ratio: 9.998812e-02	ci left: 6.209299e-04	ci right 6.866937e-04	k: 1535	n:2350000
ETV3   2350000 perm   2827 sec   (831 perm/sec)   p_kst 6.531915e-04   p_cons 4.166689e-01   p_joint 6.531915e-04

Outputting figure to mutsig2_images.part000000000058/ETV3.2_1587_2350000_0.00065319_0.41667_0.00065319.png
                gene_name: ETV3
               theta_stop: 0.100 
                    nperm: 2350000 
                     p_ks: 0.00065 
        ci_ks_bounds_left: 0.00062 
       ci_ks_bounds_right: 0.00069 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.00065 
     ci_joint_bounds_left: 0.00062 
    ci_joint_bounds_right: 0.00069 

Current progress: 57 percent done.
ETV3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.687064e-02	ci left: 6.710580e-01	ci right 6.894369e-01	k: 6803	n:10000
Cons ci ratio: 5.835992e-02	ci left: 3.017350e-01	ci right 3.199753e-01	k: 3108	n:10000
KS ci ratio: 2.412351e-02	ci left: 7.164367e-01	ci right 7.340319e-01	k: 7253	n:10000
ETV3L   10000 perm   2 sec   (6501 perm/sec)   p_kst 7.253000e-01   p_cons 3.108000e-01   p_joint 6.803000e-01

Outputting figure to mutsig2_images.part000000000058/ETV3L.2_1106_10000_0.7253_0.3108_0.6803.png
                gene_name: ETV3L
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 71 percent done.
EXD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.713222e-02	ci left: 5.171578e-01	ci right 5.368265e-01	k: 5270	n:10000
Cons ci ratio: 4.619910e-02	ci left: 4.088062e-01	ci right 4.282413e-01	k: 4185	n:10000
KS ci ratio: 1.421137e-01	ci left: 6.565505e-02	ci right 7.579675e-02	k: 706	n:10000
EXD3   10000 perm   2 sec   (5486 perm/sec)   p_kst 7.060000e-02   p_cons 4.185000e-01   p_joint 5.270000e-01

Joint ci ratio: 6.095484e-02	ci left: 1.661014e-01	ci right 1.765944e-01	k: 3426	n:20000
Cons ci ratio: 3.301540e-02	ci left: 4.065632e-01	ci right 4.202620e-01	k: 8268	n:20000
KS ci ratio: 1.021734e-01	ci left: 6.503709e-02	ci right 7.208897e-02	k: 1370	n:20000
EXD3   20000 perm   4 sec   (4955 perm/sec)   p_kst 6.850000e-02   p_cons 4.134000e-01   p_joint 1.713000e-01

Joint ci ratio: 4.201119e-02	ci left: 2.201856e-01	ci right 2.296677e-01	k: 6747	n:30000
Cons ci ratio: 2.705436e-02	ci left: 4.060898e-01	ci right 4.172606e-01	k: 12350	n:30000
KS ci ratio: 8.261896e-02	ci left: 6.690901e-02	ci right 7.270797e-02	k: 2093	n:30000
EXD3   30000 perm   6 sec   (4683 perm/sec)   p_kst 6.976667e-02   p_cons 4.116667e-01   p_joint 2.249000e-01

Outputting figure to mutsig2_images.part000000000058/EXD3.2_2715_30000_0.069767_0.41167_0.2249.png
                gene_name: EXD3
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.070 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 86 percent done.
EXOC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.345173e-02	ci left: 8.885187e-01	ci right 9.006503e-01	k: 8947	n:10000
Cons ci ratio: 6.742779e-02	ci left: 2.440081e-01	ci right 2.611363e-01	k: 2525	n:10000
KS ci ratio: 1.504075e-01	ci left: 5.879809e-02	ci right 6.845803e-02	k: 635	n:10000
EXOC2   10000 perm   2 sec   (5683 perm/sec)   p_kst 6.350000e-02   p_cons 2.525000e-01   p_joint 8.947000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 4.747785e-02	ci left: 2.481271e-01	ci right 2.602444e-01	k: 5083	n:20000
KS ci ratio: 1.051262e-01	ci left: 6.157304e-02	ci right 6.845409e-02	k: 1299	n:20000
EXOC2   20000 perm   4 sec   (5030 perm/sec)   p_kst 6.495000e-02   p_cons 2.541500e-01   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 3.917889e-02	ci left: 2.452734e-01	ci right 2.551084e-01	k: 7505	n:30000
KS ci ratio: 8.497675e-02	ci left: 6.341196e-02	ci right 6.907239e-02	k: 1986	n:30000
EXOC2   30000 perm   6 sec   (4777 perm/sec)   p_kst 6.620000e-02   p_cons 2.501667e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000058/EXOC2.2_2883_30000_0.0662_0.25017_1.png
                gene_name: EXOC2
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.066 
        ci_ks_bounds_left: 0.063 
       ci_ks_bounds_right: 0.069 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000058
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 58 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1652>
Subject: Job 9877115: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1652>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000059> was used as the working directory.
Started at Fri Oct  5 22:38:58 2012
Results reported at Fri Oct  5 22:40:48 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000059.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000059.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 59  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000059.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    104.81 sec.
    Max Memory :      1924 MB
    Max Swap   :      4625 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
59
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 59
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 59: processing genes 5260 - 5350
Calculating significance of each gene.
Using projection method.
5260	EXOC3L	1
5261	EXOC3L2	1
5262	EXOC4	1
5263	EXOC5	1
5264	EXOC6	1
5265	EXOC6B	1
5266	EXOC7	1
5267	EXOC8	1
5268	EXOG	1
5269	EXOSC1	1
5270	EXOSC10	1
5271	EXOSC2	1
5272	EXOSC3	1
5273	EXOSC4	5.534273e-02
5274	EXOSC5	1
5275	EXOSC7	1
5276	EXOSC8	1
5277	EXOSC9	1
5278	EXPH5	1
5279	EXT1	1.976602e-01
5280	EXT2	1
5281	EXTL1	1
5282	EXTL2	1
5283	EXTL3	1.413364e-01
5284	EYA1	1
5285	EYA2	1.027524e-01
5286	EYA3	1
5287	EYA4	1
5288	EZH1	1
5289	EZH2	1
5290	EZR	1
5291	F10	1
5292	F11	1.840247e-01
5293	F11R	1
5294	F12	1
5295	F13A1	1
5296	F13B	1.305521e-01
5297	F2	1
5298	F2R	1
5299	F2RL1	1
5300	F2RL2	1
5301	F2RL3	1
5302	F3	1
5303	F5	1
5304	F7	1
5305	F8	1
5306	F9	1
5307	FA2H	1
5308	FAAH	1
5309	FAAH2	1
5310	FABP1	1
5311	FABP12	1
5312	FABP2	1
5313	FABP3	1
5314	FABP4	1
5315	FABP5	1
5316	FABP6	1
5317	FABP7	1
In gene FABP9 the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 414     n = 1	mu =   6.75e-07
5318	FABP9	3.714603e-02
5319	FADD	1
5320	FADS1	1
5321	FADS2	1.414656e-01
5322	FADS3	1
5323	FADS6	1
5324	FAF1	1
5325	FAF2	1
5326	FAH	1
5327	FAHD1	1
5328	FAHD2A	1
5329	FAHD2B	1
5330	FAIM	1
5331	FAIM2	1
5332	FAIM3	1
5333	FAM100A	4.585280e-02
5334	FAM100B	1
5335	FAM101A	1
5336	FAM101B	1
5337	FAM102A	1
5338	FAM102B	1
5339	FAM103A1	9.581993e-03
5340	FAM104A	1
5341	FAM104B	1
5342	FAM105A	1
5343	FAM105B	1
5344	FAM107A	1
5345	FAM107B	1
5346	FAM108A1	1.438859e-03
5347	FAM108B1	6.420346e-02
5348	FAM108C1	1
5349	FAM109A	1
5350	FAM109B	1
Done

Running MutSig 2:
Scatter job 59: processing genes 5260 - 5350
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
FAM108A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.784099e-02	ci left: 2.417346e-01	ci right 2.588111e-01	k: 2502	n:10000
Cons ci ratio: 8.654491e-03	ci left: 9.492931e-01	ci right 9.576401e-01	k: 9536	n:10000
KS ci ratio: 2.601440e-01	ci left: 1.930852e-02	ci right 2.517438e-02	k: 221	n:10000
FAM108A1   10000 perm   2 sec   (5141 perm/sec)   p_kst 2.210000e-02   p_cons 9.536000e-01   p_joint 2.502000e-01

Joint ci ratio: 4.361978e-02	ci left: 2.813330e-01	ci right 2.939288e-01	k: 5752	n:20000
Cons ci ratio: 6.130775e-03	ci left: 9.503872e-01	ci right 9.562801e-01	k: 19068	n:20000
KS ci ratio: 1.852381e-01	ci left: 1.986864e-02	ci right 2.397200e-02	k: 437	n:20000
FAM108A1   20000 perm   6 sec   (3162 perm/sec)   p_kst 2.185000e-02   p_cons 9.534000e-01   p_joint 2.876000e-01

Joint ci ratio: 2.959567e-02	ci left: 3.635027e-01	ci right 3.744560e-01	k: 11069	n:30000
Cons ci ratio: 5.003155e-03	ci left: 9.509880e-01	ci right 9.557903e-01	k: 28603	n:30000
KS ci ratio: 1.534099e-01	ci left: 1.966392e-02	ci right 2.296302e-02	k: 638	n:30000
FAM108A1   30000 perm   8 sec   (3556 perm/sec)   p_kst 2.126667e-02   p_cons 9.534333e-01   p_joint 3.689667e-01

Joint ci ratio: 2.563334e-02	ci left: 3.641936e-01	ci right 3.736754e-01	k: 14757	n:40000
Cons ci ratio: 4.357277e-03	ci left: 9.508038e-01	ci right 9.549802e-01	k: 38117	n:40000
KS ci ratio: 1.334185e-01	ci left: 1.971394e-02	ci right 2.255618e-02	k: 844	n:40000
FAM108A1   40000 perm   11 sec   (3784 perm/sec)   p_kst 2.110000e-02   p_cons 9.529250e-01   p_joint 3.689250e-01

Joint ci ratio: 2.133542e-02	ci left: 3.987163e-01	ci right 4.073349e-01	k: 20151	n:50000
Cons ci ratio: 3.900789e-03	ci left: 9.509455e-01	ci right 9.546817e-01	k: 47642	n:50000
KS ci ratio: 1.187177e-01	ci left: 2.007172e-02	ci right 2.262427e-02	k: 1066	n:50000
FAM108A1   50000 perm   13 sec   (3915 perm/sec)   p_kst 2.132000e-02   p_cons 9.528400e-01   p_joint 4.030200e-01

Joint ci ratio: 1.940407e-02	ci left: 4.008854e-01	ci right 4.087571e-01	k: 24289	n:60000
Cons ci ratio: 3.568334e-03	ci left: 9.509202e-01	ci right 9.543358e-01	k: 57159	n:60000
KS ci ratio: 1.078759e-01	ci left: 2.037051e-02	ci right 2.270942e-02	k: 1291	n:60000
FAM108A1   60000 perm   15 sec   (3960 perm/sec)   p_kst 2.151667e-02   p_cons 9.526500e-01   p_joint 4.048167e-01

Joint ci ratio: 1.802785e-02	ci left: 3.994917e-01	ci right 4.067735e-01	k: 28219	n:70000
Cons ci ratio: 3.286536e-03	ci left: 9.515223e-01	ci right 9.546686e-01	k: 66718	n:70000
KS ci ratio: 9.998682e-02	ci left: 2.041037e-02	ci right 2.257240e-02	k: 1503	n:70000
FAM108A1   70000 perm   18 sec   (3970 perm/sec)   p_kst 2.147143e-02   p_cons 9.531143e-01   p_joint 4.031286e-01

Outputting figure to mutsig2_images.part000000000059/FAM108A1.2_1106_70000_0.021471_0.95311_0.40313.png
                gene_name: FAM108A1
               theta_stop: 0.100 
                    nperm: 70000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000059
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 59 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1706>
Subject: Job 9877128: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1706>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000060> was used as the working directory.
Started at Fri Oct  5 22:38:58 2012
Results reported at Sat Oct  6 01:46:31 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000060.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000060.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 60  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000060.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  11353.74 sec.
    Max Memory :      2010 MB
    Max Swap   :      4752 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
60
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 60
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 60: processing genes 5351 - 5440
Calculating significance of each gene.
Using projection method.
5351	FAM110A	1
5352	FAM110B	1
5353	FAM110C	1
In gene FAM111A the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 1844    n = 1	mu =   6.75e-07
5354	FAM111A	1.499084e-01
5355	FAM111B	1
5356	FAM113A	1
5357	FAM113B	1
5358	FAM114A1	1
5359	FAM114A2	1
5360	FAM115A	1
5361	FAM115C	1
5362	FAM116A	1
5363	FAM116B	1
5364	FAM117A	1
5365	FAM117B	1
5366	FAM118A	1
5367	FAM118B	1
5368	FAM119A	1
5369	FAM119B	1
5370	FAM120A	1
5371	FAM120AOS	1
5372	FAM120B	1
5373	FAM120C	1
5374	FAM122A	1
5375	FAM122B	1
5376	FAM122C	1
5377	FAM123A	1
5378	FAM123B	1
5379	FAM123C	7.568068e-02
5380	FAM124A	1.025361e-01
5381	FAM124B	1
5382	FAM125A	1
5383	FAM125B	1
5384	FAM126A	1
5385	FAM126B	4.523627e-02
5386	FAM127A	3.069119e-02
5387	FAM127B	1
5388	FAM127C	1
5389	FAM128A	1
5390	FAM128B	1
5391	FAM129A	1
5392	FAM129B	1
5393	FAM129C	1
5394	FAM131A	1
5395	FAM131B	1
5396	FAM131C	1
5397	FAM132A	1
5398	FAM133A	1
5399	FAM133B	1
5400	FAM134A	1
5401	FAM134B	5.932845e-02
5402	FAM134C	1
5403	FAM135A	3.289982e-01
5404	FAM135B	1
5405	FAM136A	1
5406	FAM136B	1
5407	FAM13A	5.638831e-02
In gene FAM13B the following bins exceed PROBCAP:
    PRAD-EJ-5517	categ 6	N = 2902    n = 1	mu =   1.98e-07
5408	FAM13B	8.188883e-02
5409	FAM13C	1
5410	FAM149A	1
5411	FAM150A	1
5412	FAM150B	1
5413	FAM151A	1
5414	FAM151B	1
5415	FAM153A	1.372480e-02
5416	FAM153B	8.529724e-02
5417	FAM153C	1
5418	FAM154A	5.617253e-02
5419	FAM154B	1
5420	FAM155A	1.130631e-01
5421	FAM155B	1
5422	FAM158A	1
5423	FAM159A	1
5424	FAM160A2	1
5425	FAM160B1	1
5426	FAM160B2	1
5427	FAM161A	1
5428	FAM161B	1
5429	FAM162A	1
5430	FAM162B	1
5431	FAM163A	2.139828e-02
5432	FAM164A	1
5433	FAM164C	1
5434	FAM165B	1
5435	FAM166A	5.420888e-02
5436	FAM166B	1
5437	FAM167A	1
5438	FAM167B	1
5439	FAM168A	1
5440	FAM168B	1
Done

Running MutSig 2:
Scatter job 60: processing genes 5351 - 5440
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
FAM13A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.181215e+00	ci left: 4.796397e-04	ci right 1.838264e-03	k: 10	n:10000
Cons ci ratio: 1.639045e-01	ci left: 4.965055e-02	ci right 5.861142e-02	k: 540	n:10000
KS ci ratio: 1.959510e+00	ci left: 6.187149e-05	ci right 8.764745e-04	k: 3	n:10000
FAM13A   10000 perm   2 sec   (5311 perm/sec)   p_kst 3.000000e-04   p_cons 5.400000e-02   p_joint 1.000000e-03

Joint ci ratio: 1.385617e+00	ci left: 1.407294e-04	ci right 7.210000e-04	k: 7	n:20000
Cons ci ratio: 1.147833e-01	ci left: 5.192892e-02	ci right 5.830119e-02	k: 1101	n:20000
KS ci ratio: 1.600053e+00	ci left: 8.117914e-05	ci right 5.833193e-04	k: 5	n:20000
FAM13A   20000 perm   7 sec   (2976 perm/sec)   p_kst 2.500000e-04   p_cons 5.505000e-02   p_joint 3.500000e-04

Joint ci ratio: 1.181688e+00	ci left: 1.598575e-04	ci right 6.129261e-04	k: 10	n:30000
Cons ci ratio: 9.572925e-02	ci left: 5.039385e-02	ci right 5.549316e-02	k: 1587	n:30000
KS ci ratio: 1.385721e+00	ci left: 9.381708e-05	ci right 4.806964e-04	k: 7	n:30000
FAM13A   30000 perm   9 sec   (3248 perm/sec)   p_kst 2.333333e-04   p_cons 5.290000e-02   p_joint 3.333333e-04

Joint ci ratio: 1.306503e+00	ci left: 8.634963e-05	ci right 3.940415e-04	k: 8	n:40000
Cons ci ratio: 8.284920e-02	ci left: 5.080001e-02	ci right 5.521516e-02	k: 2119	n:40000
KS ci ratio: 1.181747e+00	ci left: 1.198910e-04	ci right 4.597107e-04	k: 10	n:40000
FAM13A   40000 perm   12 sec   (3384 perm/sec)   p_kst 2.500000e-04   p_cons 5.297500e-02   p_joint 2.000000e-04

Joint ci ratio: 1.481502e+00	ci left: 4.403912e-05	ci right 2.611710e-04	k: 6	n:50000
Cons ci ratio: 7.454939e-02	ci left: 5.044321e-02	ci right 5.436896e-02	k: 2619	n:50000
KS ci ratio: 1.087060e+00	ci left: 1.240175e-04	ci right 4.191941e-04	k: 12	n:50000
FAM13A   50000 perm   14 sec   (3489 perm/sec)   p_kst 2.400000e-04   p_cons 5.238000e-02   p_joint 1.200000e-04

Joint ci ratio: 1.306558e+00	ci left: 5.756557e-05	ci right 2.627028e-04	k: 8	n:60000
Cons ci ratio: 6.805407e-02	ci left: 5.061395e-02	ci right 5.419616e-02	k: 3143	n:60000
KS ci ratio: 9.798612e-01	ci left: 1.399296e-04	ci right 4.123035e-04	k: 15	n:60000
FAM13A   60000 perm   17 sec   (3521 perm/sec)   p_kst 2.500000e-04   p_cons 5.238333e-02   p_joint 1.333333e-04

Joint ci ratio: 1.181823e+00	ci left: 6.850761e-05	ci right 2.627036e-04	k: 10	n:70000
Cons ci ratio: 6.294254e-02	ci left: 5.084514e-02	ci right 5.416351e-02	k: 3674	n:70000
KS ci ratio: 9.238275e-01	ci left: 1.414794e-04	ci right 3.888094e-04	k: 17	n:70000
FAM13A   70000 perm   20 sec   (3485 perm/sec)   p_kst 2.428571e-04   p_cons 5.248571e-02   p_joint 1.428571e-04

Joint ci ratio: 1.131515e+00	ci left: 6.864144e-05	ci right 2.460121e-04	k: 11	n:80000
Cons ci ratio: 5.875201e-02	ci left: 5.116170e-02	ci right 5.427084e-02	k: 4216	n:80000
KS ci ratio: 8.552965e-01	ci left: 1.527130e-04	ci right 3.860784e-04	k: 20	n:80000
FAM13A   80000 perm   23 sec   (3472 perm/sec)   p_kst 2.500000e-04   p_cons 5.270000e-02   p_joint 1.375000e-04

Joint ci ratio: 9.799074e-01	ci left: 9.328497e-05	ci right 2.748764e-04	k: 15	n:90000
Cons ci ratio: 5.560962e-02	ci left: 5.086536e-02	ci right 5.378580e-02	k: 4708	n:90000
KS ci ratio: 7.686599e-01	ci left: 1.797709e-04	ci right 4.100277e-04	k: 25	n:90000
FAM13A   90000 perm   26 sec   (3459 perm/sec)   p_kst 2.777778e-04   p_cons 5.231111e-02   p_joint 1.666667e-04

Joint ci ratio: 1.753025e+00	ci left: 1.089876e-05	ci right 1.024127e-04	k: 4	n:100000
Cons ci ratio: 5.272523e-02	ci left: 5.099727e-02	ci right 5.376877e-02	k: 5237	n:100000
KS ci ratio: 6.928503e-01	ci left: 2.106394e-04	ci right 4.399916e-04	k: 31	n:100000
FAM13A   100000 perm   29 sec   (3435 perm/sec)   p_kst 3.100000e-04   p_cons 5.237000e-02   p_joint 4.000000e-05

Joint ci ratio: 1.753029e+00	ci left: 9.907953e-06	ci right 9.310271e-05	k: 4	n:110000
Cons ci ratio: 5.028906e-02	ci left: 5.102756e-02	ci right 5.366883e-02	k: 5757	n:110000
KS ci ratio: 6.624925e-01	ci left: 2.140636e-04	ci right 4.318970e-04	k: 34	n:110000
FAM13A   110000 perm   32 sec   (3414 perm/sec)   p_kst 3.090909e-04   p_cons 5.233636e-02   p_joint 3.636364e-05

Joint ci ratio: 1.753033e+00	ci left: 9.082284e-06	ci right 8.534435e-05	k: 4	n:120000
Cons ci ratio: 4.800898e-02	ci left: 5.136833e-02	ci right 5.390334e-02	k: 6315	n:120000
KS ci ratio: 6.358046e-01	ci left: 2.171041e-04	ci right 4.249721e-04	k: 37	n:120000
FAM13A   120000 perm   35 sec   (3387 perm/sec)   p_kst 3.083333e-04   p_cons 5.262500e-02   p_joint 3.333333e-05

Joint ci ratio: 1.087154e+00	ci left: 4.769761e-05	ci right 1.612374e-04	k: 12	n:130000
Cons ci ratio: 4.412035e-02	ci left: 5.598174e-02	ci right 5.851498e-02	k: 7441	n:130000
KS ci ratio: 6.047691e-01	ci left: 2.263347e-04	ci right 4.278308e-04	k: 41	n:130000
FAM13A   130000 perm   39 sec   (3358 perm/sec)   p_kst 3.153846e-04   p_cons 5.723846e-02   p_joint 9.230769e-05

Joint ci ratio: 7.278477e-01	ci left: 1.329025e-04	ci right 2.890428e-04	k: 28	n:140000
Cons ci ratio: 4.259855e-02	ci left: 5.581945e-02	ci right 5.825608e-02	k: 7984	n:140000
KS ci ratio: 5.842631e-01	ci left: 2.283695e-04	ci right 4.218912e-04	k: 44	n:140000
FAM13A   140000 perm   42 sec   (3327 perm/sec)   p_kst 3.142857e-04   p_cons 5.702857e-02   p_joint 2.000000e-04

Joint ci ratio: 6.928884e-01	ci left: 1.404242e-04	ci right 2.933341e-04	k: 31	n:150000
Cons ci ratio: 4.114993e-02	ci left: 5.587159e-02	ci right 5.822557e-02	k: 8556	n:150000
KS ci ratio: 5.657108e-01	ci left: 2.302343e-04	ci right 4.166454e-04	k: 47	n:150000
FAM13A   150000 perm   46 sec   (3294 perm/sec)   p_kst 3.133333e-04   p_cons 5.704000e-02   p_joint 2.066667e-04

Joint ci ratio: 6.358305e-01	ci left: 1.628264e-04	ci right 3.187337e-04	k: 37	n:160000
Cons ci ratio: 3.987446e-02	ci left: 5.582556e-02	ci right 5.810302e-02	k: 9113	n:160000
KS ci ratio: 5.284802e-01	ci left: 2.535502e-04	ci right 4.403416e-04	k: 54	n:160000
FAM13A   160000 perm   49 sec   (3270 perm/sec)   p_kst 3.375000e-04   p_cons 5.695625e-02   p_joint 2.312500e-04

Joint ci ratio: 6.121255e-01	ci left: 1.681027e-04	ci right 3.203902e-04	k: 40	n:170000
Cons ci ratio: 3.861551e-02	ci left: 5.604825e-02	ci right 5.826100e-02	k: 9715	n:170000
KS ci ratio: 5.146319e-01	ci left: 2.539581e-04	ci right 4.343909e-04	k: 57	n:170000
FAM13A   170000 perm   52 sec   (3239 perm/sec)   p_kst 3.352941e-04   p_cons 5.714706e-02   p_joint 2.352941e-04

Joint ci ratio: 6.047969e-01	ci left: 1.634621e-04	ci right 3.089937e-04	k: 41	n:180000
Cons ci ratio: 3.748993e-02	ci left: 5.618662e-02	ci right 5.833877e-02	k: 10306	n:180000
KS ci ratio: 5.102555e-01	ci left: 2.446857e-04	ci right 4.165273e-04	k: 58	n:180000
FAM13A   180000 perm   57 sec   (3183 perm/sec)   p_kst 3.222222e-04   p_cons 5.725556e-02   p_joint 2.277778e-04

Joint ci ratio: 5.717185e-01	ci left: 1.772568e-04	ci right 3.229214e-04	k: 46	n:190000
Cons ci ratio: 3.649466e-02	ci left: 5.620168e-02	ci right 5.829606e-02	k: 10876	n:190000
KS ci ratio: 4.899162e-01	ci left: 2.548035e-04	ci right 4.242139e-04	k: 63	n:190000
FAM13A   190000 perm   60 sec   (3154 perm/sec)   p_kst 3.315789e-04   p_cons 5.724211e-02   p_joint 2.421053e-04

Joint ci ratio: 5.383807e-01	ci left: 1.941863e-04	ci right 3.409416e-04	k: 52	n:200000
Cons ci ratio: 3.551712e-02	ci left: 5.638946e-02	ci right 5.843339e-02	k: 11481	n:200000
KS ci ratio: 4.684464e-01	ci left: 2.684402e-04	ci right 4.365996e-04	k: 69	n:200000
FAM13A   200000 perm   64 sec   (3126 perm/sec)   p_kst 3.450000e-04   p_cons 5.740500e-02   p_joint 2.600000e-04

Joint ci ratio: 5.657373e-01	ci left: 1.644513e-04	ci right 2.976082e-04	k: 47	n:210000
Cons ci ratio: 3.460654e-02	ci left: 5.658364e-02	ci right 5.858098e-02	k: 12091	n:210000
KS ci ratio: 4.587205e-01	ci left: 2.682740e-04	ci right 4.317526e-04	k: 72	n:210000
FAM13A   210000 perm   68 sec   (3097 perm/sec)   p_kst 3.428571e-04   p_cons 5.757619e-02   p_joint 2.238095e-04

Joint ci ratio: 5.435407e-01	ci left: 1.726086e-04	ci right 3.047870e-04	k: 51	n:220000
Cons ci ratio: 3.374142e-02	ci left: 5.682841e-02	ci right 5.878326e-02	k: 12716	n:220000
KS ci ratio: 4.409543e-01	ci left: 2.802632e-04	ci right 4.424693e-04	k: 78	n:220000
FAM13A   220000 perm   72 sec   (3069 perm/sec)   p_kst 3.545455e-04   p_cons 5.780000e-02   p_joint 2.318182e-04

Joint ci ratio: 6.929149e-01	ci left: 9.158002e-05	ci right 1.913077e-04	k: 31	n:230000
Cons ci ratio: 3.296169e-02	ci left: 5.697480e-02	ci right 5.888854e-02	k: 13323	n:230000
KS ci ratio: 4.226245e-01	ci left: 2.952059e-04	ci right 4.569531e-04	k: 85	n:230000
FAM13A   230000 perm   76 sec   (3039 perm/sec)   p_kst 3.695652e-04   p_cons 5.792609e-02   p_joint 1.347826e-04

Joint ci ratio: 4.525709e-01	ci left: 2.421155e-04	ci right 3.870690e-04	k: 74	n:240000
Cons ci ratio: 3.226682e-02	ci left: 5.699781e-02	ci right 5.887122e-02	k: 13903	n:240000
KS ci ratio: 4.064055e-01	ci left: 3.090316e-04	ci right 4.701039e-04	k: 92	n:240000
FAM13A   240000 perm   80 sec   (3011 perm/sec)   p_kst 3.833333e-04   p_cons 5.792917e-02   p_joint 3.083333e-04

Joint ci ratio: 4.409639e-01	ci left: 2.466306e-04	ci right 3.893751e-04	k: 78	n:250000
Cons ci ratio: 3.160255e-02	ci left: 5.705908e-02	ci right 5.889519e-02	k: 14493	n:250000
KS ci ratio: 3.959014e-01	ci left: 3.146528e-04	ci right 4.733069e-04	k: 97	n:250000
FAM13A   250000 perm   84 sec   (2983 perm/sec)   p_kst 3.880000e-04   p_cons 5.797200e-02   p_joint 3.120000e-04

Joint ci ratio: 4.302064e-01	ci left: 2.508424e-04	ci right 3.914606e-04	k: 82	n:260000
Cons ci ratio: 3.098532e-02	ci left: 5.708927e-02	ci right 5.888983e-02	k: 15076	n:260000
KS ci ratio: 3.880609e-01	ci left: 3.164191e-04	ci right 4.719963e-04	k: 101	n:260000
FAM13A   260000 perm   88 sec   (2942 perm/sec)   p_kst 3.884615e-04   p_cons 5.798462e-02   p_joint 3.153846e-04

Joint ci ratio: 7.687368e-01	ci left: 5.992191e-05	ci right 1.366819e-04	k: 25	n:270000
Cons ci ratio: 3.039362e-02	ci left: 5.715064e-02	ci right 5.891812e-02	k: 15668	n:270000
KS ci ratio: 3.824777e-01	ci left: 3.147347e-04	ci right 4.666973e-04	k: 104	n:270000
FAM13A   270000 perm   93 sec   (2899 perm/sec)   p_kst 3.851852e-04   p_cons 5.802963e-02   p_joint 9.259259e-05

Joint ci ratio: 7.407720e-01	ci left: 6.354797e-05	ci right 1.402954e-04	k: 27	n:280000
Cons ci ratio: 2.982971e-02	ci left: 5.722567e-02	ci right 5.896206e-02	k: 16265	n:280000
KS ci ratio: 3.753941e-01	ci left: 3.164193e-04	ci right 4.656696e-04	k: 108	n:280000
FAM13A   280000 perm   98 sec   (2868 perm/sec)   p_kst 3.857143e-04   p_cons 5.808929e-02   p_joint 9.642857e-05

Joint ci ratio: 7.156526e-01	ci left: 6.697256e-05	ci right 1.436135e-04	k: 29	n:290000
Cons ci ratio: 2.926016e-02	ci left: 5.742936e-02	ci right 5.913810e-02	k: 16901	n:290000
KS ci ratio: 3.670688e-01	ci left: 3.211415e-04	ci right 4.684545e-04	k: 113	n:290000
FAM13A   290000 perm   102 sec   (2840 perm/sec)   p_kst 3.896552e-04   p_cons 5.827931e-02   p_joint 1.000000e-04

Joint ci ratio: 7.040152e-01	ci left: 6.747057e-05	ci right 1.427532e-04	k: 30	n:300000
Cons ci ratio: 2.875249e-02	ci left: 5.750388e-02	ci right 5.918466e-02	k: 17502	n:300000
KS ci ratio: 3.607937e-01	ci left: 3.225510e-04	ci right 4.673867e-04	k: 117	n:300000
FAM13A   300000 perm   107 sec   (2811 perm/sec)   p_kst 3.900000e-04   p_cons 5.834000e-02   p_joint 1.000000e-04

Joint ci ratio: 6.929278e-01	ci left: 6.794613e-05	ci right 1.419390e-04	k: 31	n:310000
Cons ci ratio: 2.830026e-02	ci left: 5.745848e-02	ci right 5.911108e-02	k: 18067	n:310000
KS ci ratio: 3.533838e-01	ci left: 3.268285e-04	ci right 4.698794e-04	k: 122	n:310000
FAM13A   310000 perm   112 sec   (2778 perm/sec)   p_kst 3.935484e-04   p_cons 5.828065e-02   p_joint 1.000000e-04

Joint ci ratio: 6.823482e-01	ci left: 6.840090e-05	ci right 1.411673e-04	k: 32	n:320000
Cons ci ratio: 2.784730e-02	ci left: 5.749993e-02	ci right 5.912683e-02	k: 18659	n:320000
KS ci ratio: 3.464125e-01	ci left: 3.308672e-04	ci right 4.721882e-04	k: 127	n:320000
FAM13A   320000 perm   117 sec   (2744 perm/sec)   p_kst 3.968750e-04   p_cons 5.830937e-02   p_joint 1.000000e-04

Joint ci ratio: 6.722388e-01	ci left: 6.883637e-05	ci right 1.404343e-04	k: 33	n:330000
Cons ci ratio: 2.739502e-02	ci left: 5.762035e-02	ci right 5.922377e-02	k: 19278	n:330000
KS ci ratio: 3.411234e-01	ci left: 3.319158e-04	ci right 4.710430e-04	k: 131	n:330000
FAM13A   330000 perm   122 sec   (2714 perm/sec)   p_kst 3.969697e-04   p_cons 5.841818e-02   p_joint 1.000000e-04

Joint ci ratio: 6.722399e-01	ci left: 6.681174e-05	ci right 1.363040e-04	k: 33	n:340000
Cons ci ratio: 2.698136e-02	ci left: 5.766376e-02	ci right 5.924378e-02	k: 19873	n:340000
KS ci ratio: 3.360695e-01	ci left: 3.329181e-04	ci right 4.699500e-04	k: 135	n:340000
FAM13A   340000 perm   127 sec   (2680 perm/sec)   p_kst 3.970588e-04   p_cons 5.845000e-02   p_joint 9.705882e-05

Joint ci ratio: 6.625669e-01	ci left: 6.727516e-05	ci right 1.357448e-04	k: 34	n:350000
Cons ci ratio: 2.659832e-02	ci left: 5.765374e-02	ci right 5.921072e-02	k: 20450	n:350000
KS ci ratio: 3.300566e-01	ci left: 3.364976e-04	ci right 4.719987e-04	k: 140	n:350000
FAM13A   350000 perm   132 sec   (2653 perm/sec)   p_kst 4.000000e-04   p_cons 5.842857e-02   p_joint 9.714286e-05

Joint ci ratio: 6.625678e-01	ci left: 6.540638e-05	ci right 1.319742e-04	k: 34	n:360000
Cons ci ratio: 2.622121e-02	ci left: 5.768585e-02	ci right 5.922127e-02	k: 21042	n:360000
KS ci ratio: 3.266009e-01	ci left: 3.347969e-04	ci right 4.679055e-04	k: 143	n:360000
FAM13A   360000 perm   137 sec   (2624 perm/sec)   p_kst 3.972222e-04   p_cons 5.845000e-02   p_joint 9.444444e-05

Joint ci ratio: 6.625687e-01	ci left: 6.363862e-05	ci right 1.284074e-04	k: 34	n:370000
Cons ci ratio: 2.587177e-02	ci left: 5.766532e-02	ci right 5.917944e-02	k: 21615	n:370000
KS ci ratio: 3.232515e-01	ci left: 3.331951e-04	ci right 4.640267e-04	k: 146	n:370000
FAM13A   370000 perm   142 sec   (2597 perm/sec)   p_kst 3.945946e-04   p_cons 5.841892e-02   p_joint 9.189189e-05

Joint ci ratio: 6.444118e-01	ci left: 6.635337e-05	ci right 1.311533e-04	k: 36	n:380000
Cons ci ratio: 2.551579e-02	ci left: 5.773233e-02	ci right 5.922704e-02	k: 22221	n:380000
KS ci ratio: 3.189413e-01	ci left: 3.341049e-04	ci right 4.631872e-04	k: 150	n:380000
FAM13A   380000 perm   148 sec   (2566 perm/sec)   p_kst 3.947368e-04   p_cons 5.847632e-02   p_joint 9.473684e-05

Joint ci ratio: 6.444126e-01	ci left: 6.465198e-05	ci right 1.277905e-04	k: 36	n:390000
Cons ci ratio: 2.520579e-02	ci left: 5.765839e-02	ci right 5.913279e-02	k: 22773	n:390000
KS ci ratio: 3.189429e-01	ci left: 3.255378e-04	ci right 4.513110e-04	k: 150	n:390000
FAM13A   390000 perm   154 sec   (2535 perm/sec)   p_kst 3.846154e-04   p_cons 5.839231e-02   p_joint 9.230769e-05

Joint ci ratio: 6.358770e-01	ci left: 6.512935e-05	ci right 1.274968e-04	k: 37	n:400000
Cons ci ratio: 2.487795e-02	ci left: 5.771501e-02	ci right 5.917139e-02	k: 23376	n:400000
KS ci ratio: 3.127883e-01	ci left: 3.312106e-04	ci right 4.562131e-04	k: 156	n:400000
FAM13A   400000 perm   160 sec   (2499 perm/sec)   p_kst 3.900000e-04   p_cons 5.844000e-02   p_joint 9.250000e-05

Joint ci ratio: 6.276717e-01	ci left: 6.558876e-05	ci right 1.272124e-04	k: 38	n:410000
Cons ci ratio: 2.458655e-02	ci left: 5.766229e-02	ci right 5.910006e-02	k: 23935	n:410000
KS ci ratio: 3.098424e-01	ci left: 3.298778e-04	ci right 4.529729e-04	k: 159	n:410000
FAM13A   410000 perm   166 sec   (2470 perm/sec)   p_kst 3.878049e-04   p_cons 5.837805e-02   p_joint 9.268293e-05

Joint ci ratio: 6.276725e-01	ci left: 6.402711e-05	ci right 1.241835e-04	k: 38	n:420000
Cons ci ratio: 2.428042e-02	ci left: 5.772344e-02	ci right 5.914456e-02	k: 24541	n:420000
KS ci ratio: 3.051113e-01	ci left: 3.330100e-04	ci right 4.550081e-04	k: 164	n:420000
FAM13A   420000 perm   172 sec   (2447 perm/sec)   p_kst 3.904762e-04   p_cons 5.843095e-02   p_joint 9.047619e-05

Joint ci ratio: 6.197769e-01	ci left: 6.449568e-05	ci right 1.239846e-04	k: 39	n:430000
Cons ci ratio: 2.400421e-02	ci left: 5.769629e-02	ci right 5.910036e-02	k: 25110	n:430000
KS ci ratio: 3.005905e-01	ci left: 3.360102e-04	ci right 4.569351e-04	k: 169	n:430000
FAM13A   430000 perm   177 sec   (2423 perm/sec)   p_kst 3.930233e-04   p_cons 5.839535e-02   p_joint 9.069767e-05

Joint ci ratio: 6.197775e-01	ci left: 6.302985e-05	ci right 1.211669e-04	k: 39	n:440000
Cons ci ratio: 2.372642e-02	ci left: 5.772019e-02	ci right 5.910836e-02	k: 25701	n:440000
KS ci ratio: 2.979731e-01	ci left: 3.346799e-04	ci right 4.538789e-04	k: 172	n:440000
FAM13A   440000 perm   183 sec   (2399 perm/sec)   p_kst 3.909091e-04   p_cons 5.841136e-02   p_joint 8.863636e-05

Joint ci ratio: 6.197782e-01	ci left: 6.162918e-05	ci right 1.184743e-04	k: 39	n:450000
Cons ci ratio: 2.346233e-02	ci left: 5.772322e-02	ci right 5.909581e-02	k: 26283	n:450000
KS ci ratio: 2.971166e-01	ci left: 3.292988e-04	ci right 4.461805e-04	k: 173	n:450000
FAM13A   450000 perm   189 sec   (2377 perm/sec)   p_kst 3.844444e-04   p_cons 5.840667e-02   p_joint 8.666667e-05

Joint ci ratio: 6.121732e-01	ci left: 6.212372e-05	ci right 1.184082e-04	k: 40	n:460000
Cons ci ratio: 2.321053e-02	ci left: 5.770891e-02	ci right 5.906623e-02	k: 26857	n:460000
KS ci ratio: 2.945882e-01	ci left: 3.281778e-04	ci right 4.434854e-04	k: 176	n:460000
FAM13A   460000 perm   196 sec   (2353 perm/sec)   p_kst 3.826087e-04   p_cons 5.838478e-02   p_joint 8.695652e-05

Joint ci ratio: 6.121738e-01	ci left: 6.080192e-05	ci right 1.158890e-04	k: 40	n:470000
Cons ci ratio: 2.295778e-02	ci left: 5.773760e-02	ci right 5.908062e-02	k: 27451	n:470000
KS ci ratio: 2.929384e-01	ci left: 3.251370e-04	ci right 4.386176e-04	k: 178	n:470000
FAM13A   470000 perm   202 sec   (2331 perm/sec)   p_kst 3.787234e-04   p_cons 5.840638e-02   p_joint 8.510638e-05

Joint ci ratio: 6.121744e-01	ci left: 5.953520e-05	ci right 1.134746e-04	k: 40	n:480000
Cons ci ratio: 2.272689e-02	ci left: 5.769887e-02	ci right 5.902730e-02	k: 28013	n:480000
KS ci ratio: 2.913161e-01	ci left: 3.222246e-04	ci right 4.339510e-04	k: 180	n:480000
FAM13A   480000 perm   208 sec   (2310 perm/sec)   p_kst 3.750000e-04   p_cons 5.836042e-02   p_joint 8.333333e-05

Joint ci ratio: 5.843317e-01	ci left: 6.524659e-05	ci right 1.205450e-04	k: 44	n:490000
Cons ci ratio: 2.249948e-02	ci left: 5.767802e-02	ci right 5.899252e-02	k: 28583	n:490000
KS ci ratio: 2.873735e-01	ci left: 3.251123e-04	ci right 4.360373e-04	k: 185	n:490000
FAM13A   490000 perm   214 sec   (2291 perm/sec)   p_kst 3.775510e-04   p_cons 5.833265e-02   p_joint 8.979592e-05

Joint ci ratio: 5.779453e-01	ci left: 6.564735e-05	ci right 1.204252e-04	k: 45	n:500000
Cons ci ratio: 2.226579e-02	ci left: 5.772173e-02	ci right 5.902339e-02	k: 29185	n:500000
KS ci ratio: 2.850839e-01	ci left: 3.241794e-04	ci right 4.337462e-04	k: 188	n:500000
FAM13A   500000 perm   220 sec   (2270 perm/sec)   p_kst 3.760000e-04   p_cons 5.837000e-02   p_joint 9.000000e-05

Joint ci ratio: 5.657761e-01	ci left: 6.771416e-05	ci right 1.225472e-04	k: 47	n:510000
Cons ci ratio: 2.205181e-02	ci left: 5.770138e-02	ci right 5.898992e-02	k: 29755	n:510000
KS ci ratio: 2.828481e-01	ci left: 3.232864e-04	ci right 4.315415e-04	k: 191	n:510000
FAM13A   510000 perm   227 sec   (2250 perm/sec)   p_kst 3.745098e-04   p_cons 5.834314e-02   p_joint 9.215686e-05

Joint ci ratio: 5.599731e-01	ci left: 6.806117e-05	ci right 1.223848e-04	k: 48	n:520000
Cons ci ratio: 2.276598e-02	ci left: 5.332600e-02	ci right 5.455589e-02	k: 28048	n:520000
KS ci ratio: 2.792353e-01	ci left: 3.260072e-04	ci right 4.335338e-04	k: 196	n:520000
FAM13A   520000 perm   233 sec   (2230 perm/sec)   p_kst 3.769231e-04   p_cons 5.393846e-02   p_joint 9.230769e-05

Joint ci ratio: 5.488829e-01	ci left: 7.002147e-05	ci right 1.243732e-04	k: 50	n:530000
Cons ci ratio: 2.254285e-02	ci left: 5.336486e-02	ci right 5.458342e-02	k: 28605	n:530000
KS ci ratio: 2.757574e-01	ci left: 3.286338e-04	ci right 4.354426e-04	k: 201	n:530000
FAM13A   530000 perm   240 sec   (2209 perm/sec)   p_kst 3.792453e-04   p_cons 5.397170e-02   p_joint 9.433962e-05

Joint ci ratio: 5.435795e-01	ci left: 7.032088e-05	ci right 1.241752e-04	k: 51	n:540000
Cons ci ratio: 2.234803e-02	ci left: 5.330285e-02	ci right 5.450935e-02	k: 29108	n:540000
KS ci ratio: 2.737324e-01	ci left: 3.277208e-04	ci right 4.333162e-04	k: 204	n:540000
FAM13A   540000 perm   246 sec   (2192 perm/sec)   p_kst 3.777778e-04   p_cons 5.390370e-02   p_joint 9.444444e-05

Joint ci ratio: 5.238049e-01	ci left: 7.533455e-05	ci right 1.301618e-04	k: 55	n:550000
Cons ci ratio: 2.214475e-02	ci left: 5.330464e-02	ci right 5.450006e-02	k: 29645	n:550000
KS ci ratio: 2.691746e-01	ci left: 3.336236e-04	ci right 4.390288e-04	k: 211	n:550000
FAM13A   550000 perm   253 sec   (2174 perm/sec)   p_kst 3.836364e-04   p_cons 5.390000e-02   p_joint 1.000000e-04

Joint ci ratio: 5.238054e-01	ci left: 7.398927e-05	ci right 1.278375e-04	k: 55	n:560000
Cons ci ratio: 2.196923e-02	ci left: 5.320338e-02	ci right 5.438696e-02	k: 30124	n:560000
KS ci ratio: 2.685426e-01	ci left: 3.293313e-04	ci right 4.330950e-04	k: 212	n:560000
FAM13A   560000 perm   260 sec   (2156 perm/sec)   p_kst 3.785714e-04   p_cons 5.379286e-02   p_joint 9.821429e-05

Joint ci ratio: 5.191903e-01	ci left: 7.421451e-05	ci right 1.275782e-04	k: 56	n:570000
Cons ci ratio: 2.178090e-02	ci left: 5.318425e-02	ci right 5.435713e-02	k: 30648	n:570000
KS ci ratio: 2.660560e-01	ci left: 3.301009e-04	ci right 4.329835e-04	k: 216	n:570000
FAM13A   570000 perm   267 sec   (2138 perm/sec)   p_kst 3.789474e-04   p_cons 5.376842e-02   p_joint 9.824561e-05

Joint ci ratio: 5.060432e-01	ci left: 7.743800e-05	ci right 1.312148e-04	k: 59	n:580000
Cons ci ratio: 2.159331e-02	ci left: 5.318469e-02	ci right 5.434736e-02	k: 31183	n:580000
KS ci ratio: 2.630426e-01	ci left: 3.324586e-04	ci right 4.347092e-04	k: 221	n:580000
FAM13A   580000 perm   274 sec   (2120 perm/sec)   p_kst 3.810345e-04   p_cons 5.376379e-02   p_joint 1.017241e-04

Joint ci ratio: 5.060437e-01	ci left: 7.612548e-05	ci right 1.289908e-04	k: 59	n:590000
Cons ci ratio: 2.140442e-02	ci left: 5.321383e-02	ci right 5.436683e-02	k: 31735	n:590000
KS ci ratio: 2.618661e-01	ci left: 3.299904e-04	ci right 4.309537e-04	k: 223	n:590000
FAM13A   590000 perm   281 sec   (2103 perm/sec)   p_kst 3.779661e-04   p_cons 5.378814e-02   p_joint 1.000000e-04

Joint ci ratio: 5.060441e-01	ci left: 7.485671e-05	ci right 1.268410e-04	k: 59	n:600000
Cons ci ratio: 2.122040e-02	ci left: 5.324204e-02	ci right 5.438561e-02	k: 32287	n:600000
KS ci ratio: 2.607052e-01	ci left: 3.276056e-04	ci right 4.273224e-04	k: 225	n:600000
FAM13A   600000 perm   288 sec   (2083 perm/sec)   p_kst 3.750000e-04   p_cons 5.381167e-02   p_joint 9.833333e-05

Joint ci ratio: 5.018791e-01	ci left: 7.506036e-05	ci right 1.266079e-04	k: 60	n:610000
Cons ci ratio: 2.103496e-02	ci left: 5.329872e-02	ci right 5.443339e-02	k: 32857	n:610000
KS ci ratio: 2.562091e-01	ci left: 3.345004e-04	ci right 4.342793e-04	k: 233	n:610000
FAM13A   610000 perm   295 sec   (2065 perm/sec)   p_kst 3.819672e-04   p_cons 5.386393e-02   p_joint 9.836066e-05

Joint ci ratio: 5.018795e-01	ci left: 7.384969e-05	ci right 1.245658e-04	k: 60	n:620000
Cons ci ratio: 2.087178e-02	ci left: 5.326856e-02	ci right 5.439368e-02	k: 33374	n:620000
KS ci ratio: 2.551215e-01	ci left: 3.321243e-04	ci right 4.307070e-04	k: 235	n:620000
FAM13A   620000 perm   303 sec   (2045 perm/sec)   p_kst 3.790323e-04   p_cons 5.382903e-02   p_joint 9.677419e-05

Joint ci ratio: 4.978156e-01	ci left: 7.406454e-05	ci right 1.243746e-04	k: 61	n:630000
Cons ci ratio: 2.071009e-02	ci left: 5.325044e-02	ci right 5.436636e-02	k: 33898	n:630000
KS ci ratio: 2.535154e-01	ci left: 3.313109e-04	ci right 4.289352e-04	k: 238	n:630000
FAM13A   630000 perm   312 sec   (2022 perm/sec)   p_kst 3.777778e-04   p_cons 5.380635e-02   p_joint 9.682540e-05

Joint ci ratio: 4.978160e-01	ci left: 7.290727e-05	ci right 1.224312e-04	k: 61	n:640000
Cons ci ratio: 2.055083e-02	ci left: 5.323914e-02	ci right 5.434615e-02	k: 34426	n:640000
KS ci ratio: 2.509042e-01	ci left: 3.334529e-04	ci right 4.305383e-04	k: 243	n:640000
FAM13A   640000 perm   319 sec   (2005 perm/sec)   p_kst 3.796875e-04   p_cons 5.379063e-02   p_joint 9.531250e-05

Joint ci ratio: 4.938493e-01	ci left: 7.313160e-05	ci right 1.222771e-04	k: 62	n:650000
Cons ci ratio: 2.039427e-02	ci left: 5.323282e-02	ci right 5.433116e-02	k: 34957	n:650000
KS ci ratio: 2.493760e-01	ci left: 3.326489e-04	ci right 4.288187e-04	k: 246	n:650000
FAM13A   650000 perm   327 sec   (1987 perm/sec)   p_kst 3.784615e-04   p_cons 5.378000e-02   p_joint 9.538462e-05

Joint ci ratio: 4.938496e-01	ci left: 7.202353e-05	ci right 1.204245e-04	k: 62	n:660000
Cons ci ratio: 2.022919e-02	ci left: 5.328703e-02	ci right 5.437749e-02	k: 35528	n:660000
KS ci ratio: 2.464009e-01	ci left: 3.361351e-04	ci right 4.319759e-04	k: 252	n:660000
FAM13A   660000 perm   335 sec   (1971 perm/sec)   p_kst 3.818182e-04   p_cons 5.383030e-02   p_joint 9.393939e-05

Joint ci ratio: 4.938500e-01	ci left: 7.094854e-05	ci right 1.186271e-04	k: 62	n:670000
Cons ci ratio: 2.008982e-02	ci left: 5.322974e-02	ci right 5.431143e-02	k: 36025	n:670000
KS ci ratio: 2.449530e-01	ci left: 3.353201e-04	ci right 4.302812e-04	k: 255	n:670000
FAM13A   670000 perm   343 sec   (1955 perm/sec)   p_kst 3.805970e-04   p_cons 5.376866e-02   p_joint 9.253731e-05

Joint ci ratio: 4.938503e-01	ci left: 6.990517e-05	ci right 1.168826e-04	k: 62	n:680000
Cons ci ratio: 1.994464e-02	ci left: 5.321807e-02	ci right 5.429162e-02	k: 36552	n:680000
KS ci ratio: 2.440021e-01	ci left: 3.331499e-04	ci right 4.270746e-04	k: 257	n:680000
FAM13A   680000 perm   351 sec   (1937 perm/sec)   p_kst 3.779412e-04   p_cons 5.375294e-02   p_joint 9.117647e-05

Joint ci ratio: 4.824952e-01	ci left: 7.270454e-05	ci right 1.200678e-04	k: 65	n:690000
Cons ci ratio: 1.979664e-02	ci left: 5.323705e-02	ci right 5.430293e-02	k: 37100	n:690000
KS ci ratio: 2.407573e-01	ci left: 3.378505e-04	ci right 4.316448e-04	k: 264	n:690000
FAM13A   690000 perm   359 sec   (1921 perm/sec)   p_kst 3.826087e-04   p_cons 5.376812e-02   p_joint 9.420290e-05

Joint ci ratio: 4.788810e-01	ci left: 7.292129e-05	ci right 1.199530e-04	k: 66	n:700000
Cons ci ratio: 1.965989e-02	ci left: 5.321429e-02	ci right 5.427227e-02	k: 37619	n:700000
KS ci ratio: 2.385174e-01	ci left: 3.397382e-04	ci right 4.330493e-04	k: 269	n:700000
FAM13A   700000 perm   367 sec   (1907 perm/sec)   p_kst 3.842857e-04   p_cons 5.374143e-02   p_joint 9.428571e-05

Joint ci ratio: 4.788813e-01	ci left: 7.189422e-05	ci right 1.182635e-04	k: 66	n:710000
Cons ci ratio: 1.952268e-02	ci left: 5.320901e-02	ci right 5.425942e-02	k: 38150	n:710000
KS ci ratio: 2.380774e-01	ci left: 3.362774e-04	ci right 4.284426e-04	k: 270	n:710000
FAM13A   710000 perm   376 sec   (1890 perm/sec)   p_kst 3.802817e-04   p_cons 5.373239e-02   p_joint 9.295775e-05

Joint ci ratio: 4.788816e-01	ci left: 7.089568e-05	ci right 1.166210e-04	k: 66	n:720000
Cons ci ratio: 1.938725e-02	ci left: 5.320944e-02	ci right 5.425249e-02	k: 38685	n:720000
KS ci ratio: 2.367706e-01	ci left: 3.355257e-04	ci right 4.269061e-04	k: 273	n:720000
FAM13A   720000 perm   384 sec   (1875 perm/sec)   p_kst 3.791667e-04   p_cons 5.372917e-02   p_joint 9.166667e-05

Joint ci ratio: 4.753474e-01	ci left: 7.112956e-05	ci right 1.165570e-04	k: 67	n:730000
Cons ci ratio: 1.924786e-02	ci left: 5.324533e-02	ci right 5.428150e-02	k: 39246	n:730000
KS ci ratio: 2.346392e-01	ci left: 3.373743e-04	ci right 4.283110e-04	k: 278	n:730000
FAM13A   730000 perm   392 sec   (1863 perm/sec)   p_kst 3.808219e-04   p_cons 5.376164e-02   p_joint 9.178082e-05

Joint ci ratio: 4.753477e-01	ci left: 7.016834e-05	ci right 1.149819e-04	k: 67	n:740000
Cons ci ratio: 1.911956e-02	ci left: 5.323724e-02	ci right 5.426626e-02	k: 39775	n:740000
KS ci ratio: 2.333880e-01	ci left: 3.366316e-04	ci right 4.268144e-04	k: 281	n:740000
FAM13A   740000 perm   400 sec   (1851 perm/sec)   p_kst 3.797297e-04   p_cons 5.375000e-02   p_joint 9.054054e-05

Joint ci ratio: 4.685074e-01	ci left: 7.158217e-05	ci right 1.164305e-04	k: 69	n:750000
Cons ci ratio: 1.900027e-02	ci left: 5.319486e-02	ci right 5.421659e-02	k: 40278	n:750000
KS ci ratio: 2.313459e-01	ci left: 3.384218e-04	ci right 4.281775e-04	k: 286	n:750000
FAM13A   750000 perm   409 sec   (1835 perm/sec)   p_kst 3.813333e-04   p_cons 5.370400e-02   p_joint 9.200000e-05

Joint ci ratio: 4.651964e-01	ci left: 7.180125e-05	ci right 1.163680e-04	k: 70	n:760000
Cons ci ratio: 1.888244e-02	ci left: 5.315756e-02	ci right 5.417216e-02	k: 40784	n:760000
KS ci ratio: 2.301463e-01	ci left: 3.376881e-04	ci right 4.267188e-04	k: 289	n:760000
FAM13A   760000 perm   417 sec   (1822 perm/sec)   p_kst 3.802632e-04   p_cons 5.366316e-02   p_joint 9.210526e-05

Joint ci ratio: 4.651967e-01	ci left: 7.086876e-05	ci right 1.148568e-04	k: 70	n:770000
Cons ci ratio: 1.875838e-02	ci left: 5.316649e-02	ci right 5.417453e-02	k: 41325	n:770000
KS ci ratio: 2.285752e-01	ci left: 3.381989e-04	ci right 4.266697e-04	k: 293	n:770000
FAM13A   770000 perm   426 sec   (1807 perm/sec)   p_kst 3.805195e-04   p_cons 5.366883e-02   p_joint 9.090909e-05

Joint ci ratio: 4.651969e-01	ci left: 6.996018e-05	ci right 1.133843e-04	k: 70	n:780000
Cons ci ratio: 1.863627e-02	ci left: 5.317777e-02	ci right 5.417939e-02	k: 41868	n:780000
KS ci ratio: 2.274180e-01	ci left: 3.374895e-04	ci right 4.252651e-04	k: 296	n:780000
FAM13A   780000 perm   435 sec   (1795 perm/sec)   p_kst 3.794872e-04   p_cons 5.367692e-02   p_joint 8.974359e-05

Joint ci ratio: 4.651972e-01	ci left: 6.907460e-05	ci right 1.119491e-04	k: 70	n:790000
Cons ci ratio: 1.852135e-02	ci left: 5.316232e-02	ci right 5.415741e-02	k: 42390	n:790000
KS ci ratio: 2.270365e-01	ci left: 3.344111e-04	ci right 4.212198e-04	k: 297	n:790000
FAM13A   790000 perm   443 sec   (1784 perm/sec)   p_kst 3.759494e-04   p_cons 5.365823e-02   p_joint 8.860759e-05

Joint ci ratio: 4.556694e-01	ci left: 7.152609e-05	ci right 1.147318e-04	k: 73	n:800000
Cons ci ratio: 1.840084e-02	ci left: 5.318959e-02	ci right 5.417864e-02	k: 42946	n:800000
KS ci ratio: 2.240485e-01	ci left: 3.396662e-04	ci right 4.265184e-04	k: 305	n:800000
FAM13A   800000 perm   452 sec   (1770 perm/sec)   p_kst 3.812500e-04   p_cons 5.368250e-02   p_joint 9.125000e-05

Joint ci ratio: 4.526214e-01	ci left: 7.173636e-05	ci right 1.146903e-04	k: 74	n:810000
Cons ci ratio: 1.828731e-02	ci left: 5.319040e-02	ci right 5.417329e-02	k: 43481	n:810000
KS ci ratio: 2.222400e-01	ci left: 3.413006e-04	ci right 4.277700e-04	k: 310	n:810000
FAM13A   810000 perm   460 sec   (1760 perm/sec)   p_kst 3.827160e-04   p_cons 5.368025e-02   p_joint 9.135802e-05

Joint ci ratio: 4.526216e-01	ci left: 7.086152e-05	ci right 1.132916e-04	k: 74	n:820000
Cons ci ratio: 1.816996e-02	ci left: 5.322398e-02	ci right 5.420112e-02	k: 44043	n:820000
KS ci ratio: 2.211759e-01	ci left: 3.405938e-04	ci right 4.264147e-04	k: 313	n:820000
FAM13A   820000 perm   469 sec   (1748 perm/sec)   p_kst 3.817073e-04   p_cons 5.371098e-02   p_joint 9.024390e-05

Joint ci ratio: 4.526219e-01	ci left: 7.000776e-05	ci right 1.119267e-04	k: 74	n:830000
Cons ci ratio: 1.805464e-02	ci left: 5.325798e-02	ci right 5.422948e-02	k: 44606	n:830000
KS ci ratio: 2.201270e-01	ci left: 3.399050e-04	ci right 4.250911e-04	k: 316	n:830000
FAM13A   830000 perm   478 sec   (1735 perm/sec)   p_kst 3.807229e-04   p_cons 5.374217e-02   p_joint 8.915663e-05

Joint ci ratio: 4.526221e-01	ci left: 6.917432e-05	ci right 1.105943e-04	k: 74	n:840000
Cons ci ratio: 1.795114e-02	ci left: 5.323666e-02	ci right 5.420214e-02	k: 45123	n:840000
KS ci ratio: 2.187511e-01	ci left: 3.403587e-04	ci right 4.250537e-04	k: 320	n:840000
FAM13A   840000 perm   487 sec   (1724 perm/sec)   p_kst 3.809524e-04   p_cons 5.371786e-02   p_joint 8.809524e-05

Joint ci ratio: 4.496345e-01	ci left: 6.940327e-05	ci right 1.106025e-04	k: 75	n:850000
Cons ci ratio: 1.785044e-02	ci left: 5.320999e-02	ci right 5.416952e-02	k: 45635	n:850000
KS ci ratio: 2.174008e-01	ci left: 3.408033e-04	ci right 4.250156e-04	k: 324	n:850000
FAM13A   850000 perm   496 sec   (1713 perm/sec)   p_kst 3.811765e-04   p_cons 5.368824e-02   p_joint 8.823529e-05

Joint ci ratio: 4.467052e-01	ci left: 6.962777e-05	ci right 1.106096e-04	k: 76	n:860000
Cons ci ratio: 1.774471e-02	ci left: 5.322218e-02	ci right 5.417618e-02	k: 46180	n:860000
KS ci ratio: 2.160751e-01	ci left: 3.412392e-04	ci right 4.249768e-04	k: 328	n:860000
FAM13A   860000 perm   506 sec   (1701 perm/sec)   p_kst 3.813953e-04   p_cons 5.369767e-02   p_joint 8.837209e-05

Joint ci ratio: 4.467054e-01	ci left: 6.882744e-05	ci right 1.093383e-04	k: 76	n:870000
Cons ci ratio: 1.764004e-02	ci left: 5.323867e-02	ci right 5.418729e-02	k: 46729	n:870000
KS ci ratio: 2.150968e-01	ci left: 3.405790e-04	ci right 4.237262e-04	k: 331	n:870000
FAM13A   870000 perm   516 sec   (1687 perm/sec)   p_kst 3.804598e-04   p_cons 5.371149e-02   p_joint 8.735632e-05

Joint ci ratio: 4.438327e-01	ci left: 6.905423e-05	ci right 1.093588e-04	k: 77	n:880000
Cons ci ratio: 1.754563e-02	ci left: 5.320615e-02	ci right 5.414906e-02	k: 47235	n:880000
KS ci ratio: 2.134950e-01	ci left: 3.420857e-04	ci right 4.248974e-04	k: 336	n:880000
FAM13A   880000 perm   525 sec   (1677 perm/sec)   p_kst 3.818182e-04   p_cons 5.367614e-02   p_joint 8.750000e-05

Joint ci ratio: 4.410146e-01	ci left: 6.927674e-05	ci right 1.093781e-04	k: 78	n:890000
Cons ci ratio: 1.744018e-02	ci left: 5.324710e-02	ci right 5.418502e-02	k: 47806	n:890000
KS ci ratio: 2.128645e-01	ci left: 3.403692e-04	ci right 4.224903e-04	k: 338	n:890000
FAM13A   890000 perm   535 sec   (1665 perm/sec)   p_kst 3.797753e-04   p_cons 5.371461e-02   p_joint 8.764045e-05

Joint ci ratio: 4.382496e-01	ci left: 6.949509e-05	ci right 1.093961e-04	k: 79	n:900000
Cons ci ratio: 1.733964e-02	ci left: 5.326946e-02	ci right 5.420230e-02	k: 48361	n:900000
KS ci ratio: 2.110051e-01	ci left: 3.429002e-04	ci right 4.248159e-04	k: 344	n:900000
FAM13A   900000 perm   544 sec   (1654 perm/sec)   p_kst 3.822222e-04   p_cons 5.373444e-02   p_joint 8.777778e-05

Joint ci ratio: 4.382498e-01	ci left: 6.873140e-05	ci right 1.081940e-04	k: 79	n:910000
Cons ci ratio: 1.724976e-02	ci left: 5.323881e-02	ci right 5.416623e-02	k: 48868	n:910000
KS ci ratio: 2.103964e-01	ci left: 3.412139e-04	ci right 4.224612e-04	k: 346	n:910000
FAM13A   910000 perm   554 sec   (1643 perm/sec)   p_kst 3.802198e-04   p_cons 5.370110e-02   p_joint 8.681319e-05

Joint ci ratio: 4.355361e-01	ci left: 6.895170e-05	ci right 1.082238e-04	k: 80	n:920000
Cons ci ratio: 1.715686e-02	ci left: 5.323482e-02	ci right 5.415713e-02	k: 49399	n:920000
KS ci ratio: 2.097929e-01	ci left: 3.395646e-04	ci right 4.201574e-04	k: 348	n:920000
FAM13A   920000 perm   563 sec   (1633 perm/sec)   p_kst 3.782609e-04   p_cons 5.369457e-02   p_joint 8.695652e-05

Joint ci ratio: 4.302565e-01	ci left: 7.012644e-05	ci right 1.094436e-04	k: 82	n:930000
Cons ci ratio: 1.706021e-02	ci left: 5.326198e-02	ci right 5.417951e-02	k: 49959	n:930000
KS ci ratio: 2.074285e-01	ci left: 3.440662e-04	ci right 4.246903e-04	k: 356	n:930000
FAM13A   930000 perm   575 sec   (1619 perm/sec)   p_kst 3.827957e-04   p_cons 5.371935e-02   p_joint 8.817204e-05

Joint ci ratio: 4.276877e-01	ci left: 7.032936e-05	ci right 1.094573e-04	k: 83	n:940000
Cons ci ratio: 1.697388e-02	ci left: 5.323666e-02	ci right 5.414907e-02	k: 50470	n:940000
KS ci ratio: 2.045823e-01	ci left: 3.504956e-04	ci right 4.313585e-04	k: 366	n:940000
FAM13A   940000 perm   585 sec   (1608 perm/sec)   p_kst 3.893617e-04   p_cons 5.369149e-02   p_joint 8.829787e-05

Joint ci ratio: 4.251645e-01	ci left: 7.052869e-05	ci right 1.094701e-04	k: 84	n:950000
Cons ci ratio: 1.689042e-02	ci left: 5.320245e-02	ci right 5.410975e-02	k: 50972	n:950000
KS ci ratio: 2.040273e-01	ci left: 3.488037e-04	ci right 4.290307e-04	k: 368	n:950000
FAM13A   950000 perm   595 sec   (1597 perm/sec)   p_kst 3.873684e-04   p_cons 5.365474e-02   p_joint 8.842105e-05

Joint ci ratio: 4.251647e-01	ci left: 6.979401e-05	ci right 1.083298e-04	k: 84	n:960000
Cons ci ratio: 1.680145e-02	ci left: 5.320943e-02	ci right 5.411202e-02	k: 51513	n:960000
KS ci ratio: 2.034768e-01	ci left: 3.471473e-04	ci right 4.267512e-04	k: 370	n:960000
FAM13A   960000 perm   605 sec   (1586 perm/sec)   p_kst 3.854167e-04   p_cons 5.365938e-02   p_joint 8.750000e-05

Joint ci ratio: 4.202490e-01	ci left: 7.091698e-05	ci right 1.094930e-04	k: 86	n:970000
Cons ci ratio: 1.671099e-02	ci left: 5.323373e-02	ci right 5.413182e-02	k: 52071	n:970000
KS ci ratio: 2.023887e-01	ci left: 3.474827e-04	ci right 4.266847e-04	k: 374	n:970000
FAM13A   970000 perm   615 sec   (1577 perm/sec)   p_kst 3.855670e-04   p_cons 5.368144e-02   p_joint 8.865979e-05

Joint ci ratio: 4.178544e-01	ci left: 7.110614e-05	ci right 1.095031e-04	k: 87	n:980000
Cons ci ratio: 1.662248e-02	ci left: 5.325450e-02	ci right 5.414814e-02	k: 52626	n:980000
KS ci ratio: 2.007885e-01	ci left: 3.497504e-04	ci right 4.287618e-04	k: 380	n:980000
FAM13A   980000 perm   626 sec   (1565 perm/sec)   p_kst 3.877551e-04   p_cons 5.370000e-02   p_joint 8.877551e-05

Joint ci ratio: 4.109086e-01	ci left: 7.310226e-05	ci right 1.117415e-04	k: 90	n:990000
Cons ci ratio: 1.654325e-02	ci left: 5.322657e-02	ci right 5.411544e-02	k: 53133	n:990000
KS ci ratio: 1.997427e-01	ci left: 3.500554e-04	ci right 4.286736e-04	k: 384	n:990000
FAM13A   990000 perm   636 sec   (1555 perm/sec)   p_kst 3.878788e-04   p_cons 5.366970e-02   p_joint 9.090909e-05

Joint ci ratio: 4.086692e-01	ci left: 7.326814e-05	ci right 1.117267e-04	k: 91	n:1000000
Cons ci ratio: 1.646595e-02	ci left: 5.319422e-02	ci right 5.407837e-02	k: 53635	n:1000000
KS ci ratio: 1.989691e-01	ci left: 3.494051e-04	ci right 4.275364e-04	k: 387	n:1000000
FAM13A   1000000 perm   647 sec   (1547 perm/sec)   p_kst 3.870000e-04   p_cons 5.363500e-02   p_joint 9.100000e-05

Joint ci ratio: 4.021644e-01	ci left: 7.521011e-05	ci right 1.138921e-04	k: 94	n:1010000
Cons ci ratio: 1.639037e-02	ci left: 5.315858e-02	ci right 5.403804e-02	k: 54133	n:1010000
KS ci ratio: 1.971979e-01	ci left: 3.525327e-04	ci right 4.305773e-04	k: 394	n:1010000
FAM13A   1010000 perm   657 sec   (1538 perm/sec)   p_kst 3.900990e-04   p_cons 5.359703e-02   p_joint 9.306931e-05

Joint ci ratio: 4.021646e-01	ci left: 7.447275e-05	ci right 1.127755e-04	k: 94	n:1020000
Cons ci ratio: 1.631013e-02	ci left: 5.315881e-02	ci right 5.403393e-02	k: 54667	n:1020000
KS ci ratio: 1.962070e-01	ci left: 3.528049e-04	ci right 4.304704e-04	k: 398	n:1020000
FAM13A   1020000 perm   667 sec   (1529 perm/sec)   p_kst 3.901961e-04   p_cons 5.359510e-02   p_joint 9.215686e-05

Joint ci ratio: 4.021648e-01	ci left: 7.374971e-05	ci right 1.116806e-04	k: 94	n:1030000
Cons ci ratio: 1.623216e-02	ci left: 5.315227e-02	ci right 5.402306e-02	k: 55194	n:1030000
KS ci ratio: 1.952308e-01	ci left: 3.530728e-04	ci right 4.303646e-04	k: 402	n:1030000
FAM13A   1030000 perm   678 sec   (1520 perm/sec)   p_kst 3.902913e-04   p_cons 5.358641e-02   p_joint 9.126214e-05

Joint ci ratio: 4.000647e-01	ci left: 7.390510e-05	ci right 1.116648e-04	k: 95	n:1040000
Cons ci ratio: 1.614917e-02	ci left: 5.318418e-02	ci right 5.405100e-02	k: 55761	n:1040000
KS ci ratio: 1.942691e-01	ci left: 3.533365e-04	ci right 4.302599e-04	k: 406	n:1040000
FAM13A   1040000 perm   688 sec   (1512 perm/sec)   p_kst 3.903846e-04   p_cons 5.361635e-02   p_joint 9.134615e-05

Joint ci ratio: 3.979971e-01	ci left: 7.405804e-05	ci right 1.116488e-04	k: 96	n:1050000
Cons ci ratio: 1.608101e-02	ci left: 5.313011e-02	ci right 5.399235e-02	k: 56238	n:1050000
KS ci ratio: 1.930866e-01	ci left: 3.545024e-04	ci right 4.311547e-04	k: 411	n:1050000
FAM13A   1050000 perm   699 sec   (1501 perm/sec)   p_kst 3.914286e-04   p_cons 5.356000e-02   p_joint 9.142857e-05

Joint ci ratio: 3.979973e-01	ci left: 7.335938e-05	ci right 1.105955e-04	k: 96	n:1060000
Cons ci ratio: 1.600745e-02	ci left: 5.311654e-02	ci right 5.397458e-02	k: 56757	n:1060000
KS ci ratio: 1.921560e-01	ci left: 3.547497e-04	ci right 4.310426e-04	k: 415	n:1060000
FAM13A   1060000 perm   710 sec   (1493 perm/sec)   p_kst 3.915094e-04   p_cons 5.354434e-02   p_joint 9.056604e-05

Joint ci ratio: 3.939564e-01	ci left: 7.435681e-05	ci right 1.116163e-04	k: 98	n:1070000
Cons ci ratio: 1.593666e-02	ci left: 5.309206e-02	ci right 5.394588e-02	k: 57264	n:1070000
KS ci ratio: 1.914669e-01	ci left: 3.541034e-04	ci right 4.299523e-04	k: 418	n:1070000
FAM13A   1070000 perm   720 sec   (1485 perm/sec)   p_kst 3.906542e-04   p_cons 5.351776e-02   p_joint 9.158879e-05

Joint ci ratio: 3.919817e-01	ci left: 7.450275e-05	ci right 1.115998e-04	k: 99	n:1080000
Cons ci ratio: 1.586041e-02	ci left: 5.310862e-02	ci right 5.395859e-02	k: 57815	n:1080000
KS ci ratio: 1.907852e-01	ci left: 3.534695e-04	ci right 4.288819e-04	k: 421	n:1080000
FAM13A   1080000 perm   731 sec   (1477 perm/sec)   p_kst 3.898148e-04   p_cons 5.353241e-02   p_joint 9.166667e-05

Joint ci ratio: 3.900363e-01	ci left: 7.464647e-05	ci right 1.115831e-04	k: 100	n:1090000
Cons ci ratio: 1.578911e-02	ci left: 5.310022e-02	ci right 5.394619e-02	k: 58339	n:1090000
KS ci ratio: 1.896648e-01	ci left: 3.545954e-04	ci right 4.297525e-04	k: 426	n:1090000
FAM13A   1090000 perm   742 sec   (1469 perm/sec)   p_kst 3.908257e-04   p_cons 5.352202e-02   p_joint 9.174312e-05

Joint ci ratio: 3.900365e-01	ci left: 7.396786e-05	ci right 1.105687e-04	k: 100	n:1100000
Cons ci ratio: 1.571933e-02	ci left: 5.308835e-02	ci right 5.393037e-02	k: 58859	n:1100000
KS ci ratio: 1.892224e-01	ci left: 3.531037e-04	ci right 4.277500e-04	k: 428	n:1100000
FAM13A   1100000 perm   753 sec   (1461 perm/sec)   p_kst 3.890909e-04   p_cons 5.350818e-02   p_joint 9.090909e-05

Joint ci ratio: 3.881198e-01	ci left: 7.411425e-05	ci right 1.105612e-04	k: 101	n:1110000
Cons ci ratio: 1.565116e-02	ci left: 5.307222e-02	ci right 5.391029e-02	k: 59374	n:1110000
KS ci ratio: 1.876970e-01	ci left: 3.559314e-04	ci right 4.304998e-04	k: 435	n:1110000
FAM13A   1110000 perm   764 sec   (1453 perm/sec)   p_kst 3.918919e-04   p_cons 5.349009e-02   p_joint 9.099099e-05

Joint ci ratio: 3.862311e-01	ci left: 7.425846e-05	ci right 1.105534e-04	k: 102	n:1120000
Cons ci ratio: 1.557755e-02	ci left: 5.309730e-02	ci right 5.393180e-02	k: 59935	n:1120000
KS ci ratio: 1.874824e-01	ci left: 3.536043e-04	ci right 4.275909e-04	k: 436	n:1120000
FAM13A   1120000 perm   775 sec   (1445 perm/sec)   p_kst 3.892857e-04   p_cons 5.351339e-02   p_joint 9.107143e-05

Joint ci ratio: 3.843698e-01	ci left: 7.440054e-05	ci right 1.105453e-04	k: 103	n:1130000
Cons ci ratio: 1.550754e-02	ci left: 5.310520e-02	ci right 5.393603e-02	k: 60477	n:1130000
KS ci ratio: 1.866302e-01	ci left: 3.538492e-04	ci right 4.275123e-04	k: 440	n:1130000
FAM13A   1130000 perm   786 sec   (1437 perm/sec)   p_kst 3.893805e-04   p_cons 5.351947e-02   p_joint 9.115044e-05

Joint ci ratio: 3.807262e-01	ci left: 7.533358e-05	ci right 1.114980e-04	k: 105	n:1140000
Cons ci ratio: 1.543833e-02	ci left: 5.311384e-02	ci right 5.394106e-02	k: 61020	n:1140000
KS ci ratio: 1.853732e-01	ci left: 3.557634e-04	ci right 4.292700e-04	k: 446	n:1140000
FAM13A   1140000 perm   797 sec   (1429 perm/sec)   p_kst 3.912281e-04   p_cons 5.352632e-02   p_joint 9.210526e-05

Joint ci ratio: 3.771843e-01	ci left: 7.625198e-05	ci right 1.124324e-04	k: 107	n:1150000
Cons ci ratio: 1.537255e-02	ci left: 5.310587e-02	ci right 5.392942e-02	k: 61544	n:1150000
KS ci ratio: 1.845493e-01	ci left: 3.559870e-04	ci right 4.291764e-04	k: 450	n:1150000
FAM13A   1150000 perm   809 sec   (1422 perm/sec)   p_kst 3.913043e-04   p_cons 5.351652e-02   p_joint 9.304348e-05

Joint ci ratio: 3.754501e-01	ci left: 7.637517e-05	ci right 1.124064e-04	k: 108	n:1160000
Cons ci ratio: 1.530838e-02	ci left: 5.309290e-02	ci right 5.391278e-02	k: 62062	n:1160000
KS ci ratio: 1.837363e-01	ci left: 3.562075e-04	ci right 4.290836e-04	k: 454	n:1160000
FAM13A   1160000 perm   820 sec   (1414 perm/sec)   p_kst 3.913793e-04   p_cons 5.350172e-02   p_joint 9.310345e-05

Joint ci ratio: 3.754503e-01	ci left: 7.572238e-05	ci right 1.114457e-04	k: 108	n:1170000
Cons ci ratio: 1.524797e-02	ci left: 5.306057e-02	ci right 5.387669e-02	k: 62557	n:1170000
KS ci ratio: 1.829340e-01	ci left: 3.564249e-04	ci right 4.289918e-04	k: 458	n:1170000
FAM13A   1170000 perm   832 sec   (1407 perm/sec)   p_kst 3.914530e-04   p_cons 5.346752e-02   p_joint 9.230769e-05

Joint ci ratio: 3.737398e-01	ci left: 7.584834e-05	ci right 1.114281e-04	k: 109	n:1180000
Cons ci ratio: 1.517886e-02	ci left: 5.309128e-02	ci right 5.390414e-02	k: 63126	n:1180000
KS ci ratio: 1.821420e-01	ci left: 3.566393e-04	ci right 4.289008e-04	k: 462	n:1180000
FAM13A   1180000 perm   843 sec   (1400 perm/sec)   p_kst 3.915254e-04   p_cons 5.349661e-02   p_joint 9.237288e-05

Joint ci ratio: 3.737399e-01	ci left: 7.521096e-05	ci right 1.104918e-04	k: 109	n:1190000
Cons ci ratio: 1.511708e-02	ci left: 5.307878e-02	ci right 5.388811e-02	k: 63644	n:1190000
KS ci ratio: 1.809730e-01	ci left: 3.584552e-04	ci right 4.305675e-04	k: 468	n:1190000
FAM13A   1190000 perm   855 sec   (1392 perm/sec)   p_kst 3.932773e-04   p_cons 5.348235e-02   p_joint 9.159664e-05

Joint ci ratio: 3.737400e-01	ci left: 7.458419e-05	ci right 1.095710e-04	k: 109	n:1200000
Cons ci ratio: 1.505592e-02	ci left: 5.306732e-02	ci right 5.387317e-02	k: 64163	n:1200000
KS ci ratio: 1.805885e-01	ci left: 3.570593e-04	ci right 4.287214e-04	k: 470	n:1200000
FAM13A   1200000 perm   866 sec   (1385 perm/sec)   p_kst 3.916667e-04   p_cons 5.346917e-02   p_joint 9.083333e-05

Joint ci ratio: 3.703879e-01	ci left: 7.546614e-05	ci right 1.104722e-04	k: 111	n:1210000
Cons ci ratio: 1.499771e-02	ci left: 5.304123e-02	ci right 5.384355e-02	k: 64664	n:1210000
KS ci ratio: 1.800162e-01	ci left: 3.564758e-04	ci right 4.277694e-04	k: 473	n:1210000
FAM13A   1210000 perm   878 sec   (1377 perm/sec)   p_kst 3.909091e-04   p_cons 5.344132e-02   p_joint 9.173554e-05

Joint ci ratio: 3.687454e-01	ci left: 7.559112e-05	ci right 1.104622e-04	k: 112	n:1220000
Cons ci ratio: 1.493266e-02	ci left: 5.306622e-02	ci right 5.386541e-02	k: 65227	n:1220000
KS ci ratio: 1.790741e-01	ci left: 3.574681e-04	ci right 4.285455e-04	k: 478	n:1220000
FAM13A   1220000 perm   890 sec   (1371 perm/sec)   p_kst 3.918033e-04   p_cons 5.346475e-02   p_joint 9.180328e-05

Joint ci ratio: 3.639456e-01	ci left: 7.719108e-05	ci right 1.122267e-04	k: 115	n:1230000
Cons ci ratio: 1.487251e-02	ci left: 5.306327e-02	ci right 5.385916e-02	k: 65756	n:1230000
KS ci ratio: 1.781467e-01	ci left: 3.584452e-04	ci right 4.293079e-04	k: 483	n:1230000
FAM13A   1230000 perm   902 sec   (1364 perm/sec)   p_kst 3.926829e-04   p_cons 5.346016e-02   p_joint 9.349593e-05

Joint ci ratio: 3.623869e-01	ci left: 7.730144e-05	ci right 1.122013e-04	k: 116	n:1240000
Cons ci ratio: 1.481532e-02	ci left: 5.304510e-02	ci right 5.383763e-02	k: 66266	n:1240000
KS ci ratio: 1.768720e-01	ci left: 3.609489e-04	ci right 4.317414e-04	k: 490	n:1240000
FAM13A   1240000 perm   914 sec   (1357 perm/sec)   p_kst 3.951613e-04   p_cons 5.344032e-02   p_joint 9.354839e-05

Joint ci ratio: 3.593286e-01	ci left: 7.813798e-05	ci right 1.130482e-04	k: 118	n:1250000
Cons ci ratio: 1.475074e-02	ci left: 5.308223e-02	ci right 5.387184e-02	k: 66845	n:1250000
KS ci ratio: 1.758010e-01	ci left: 3.626495e-04	ci right 4.332991e-04	k: 496	n:1250000
FAM13A   1250000 perm   926 sec   (1350 perm/sec)   p_kst 3.968000e-04   p_cons 5.347600e-02   p_joint 9.440000e-05

Joint ci ratio: 3.534371e-01	ci left: 8.040827e-05	ci right 1.156086e-04	k: 122	n:1260000
Cons ci ratio: 1.469172e-02	ci left: 5.308636e-02	ci right 5.387284e-02	k: 67383	n:1260000
KS ci ratio: 1.747492e-01	ci left: 3.643243e-04	ci right 4.348308e-04	k: 502	n:1260000
FAM13A   1260000 perm   938 sec   (1343 perm/sec)   p_kst 3.984127e-04   p_cons 5.347857e-02   p_joint 9.682540e-05

Joint ci ratio: 3.520091e-01	ci left: 8.049277e-05	ci right 1.155552e-04	k: 123	n:1270000
Cons ci ratio: 1.463419e-02	ci left: 5.308493e-02	ci right 5.386829e-02	k: 67914	n:1270000
KS ci ratio: 1.745760e-01	ci left: 3.622086e-04	ci right 4.322288e-04	k: 503	n:1270000
FAM13A   1270000 perm   950 sec   (1336 perm/sec)   p_kst 3.960630e-04   p_cons 5.347559e-02   p_joint 9.685039e-05

Joint ci ratio: 3.505982e-01	ci left: 8.057624e-05	ci right 1.155023e-04	k: 124	n:1280000
Cons ci ratio: 1.457453e-02	ci left: 5.310300e-02	ci right 5.388340e-02	k: 68470	n:1280000
KS ci ratio: 1.740588e-01	ci left: 3.616203e-04	ci right 4.312979e-04	k: 506	n:1280000
FAM13A   1280000 perm   963 sec   (1330 perm/sec)   p_kst 3.953125e-04   p_cons 5.349219e-02   p_joint 9.687500e-05

Joint ci ratio: 3.492042e-01	ci left: 8.065869e-05	ci right 1.154500e-04	k: 125	n:1290000
Cons ci ratio: 1.451703e-02	ci left: 5.311075e-02	ci right 5.388816e-02	k: 69013	n:1290000
KS ci ratio: 1.733762e-01	ci left: 3.617830e-04	ci right 4.311900e-04	k: 510	n:1290000
FAM13A   1290000 perm   975 sec   (1323 perm/sec)   p_kst 3.953488e-04   p_cons 5.349845e-02   p_joint 9.689922e-05

Joint ci ratio: 3.464651e-01	ci left: 8.144231e-05	ci right 1.162342e-04	k: 127	n:1300000
Cons ci ratio: 1.446164e-02	ci left: 5.310842e-02	ci right 5.388280e-02	k: 69543	n:1300000
KS ci ratio: 1.728695e-01	ci left: 3.612077e-04	ci right 4.302807e-04	k: 513	n:1300000
FAM13A   1300000 perm   988 sec   (1316 perm/sec)   p_kst 3.946154e-04   p_cons 5.349462e-02   p_joint 9.769231e-05

Joint ci ratio: 3.464653e-01	ci left: 8.082060e-05	ci right 1.153470e-04	k: 127	n:1310000
Cons ci ratio: 1.440144e-02	ci left: 5.314417e-02	ci right 5.391582e-02	k: 70123	n:1310000
KS ci ratio: 1.725343e-01	ci left: 3.599111e-04	ci right 4.285888e-04	k: 515	n:1310000
FAM13A   1310000 perm   1000 sec   (1310 perm/sec)   p_kst 3.931298e-04   p_cons 5.352901e-02   p_joint 9.694656e-05

Joint ci ratio: 3.464654e-01	ci left: 8.020832e-05	ci right 1.144731e-04	k: 127	n:1320000
Cons ci ratio: 1.374577e-02	ci left: 5.763658e-02	ci right 5.843506e-02	k: 76606	n:1320000
KS ci ratio: 1.718694e-01	ci left: 3.600842e-04	ci right 4.285027e-04	k: 519	n:1320000
FAM13A   1320000 perm   1013 sec   (1303 perm/sec)   p_kst 3.931818e-04   p_cons 5.803485e-02   p_joint 9.621212e-05

Joint ci ratio: 3.424750e-01	ci left: 8.166578e-05	ci right 1.160624e-04	k: 130	n:1330000
Cons ci ratio: 1.369214e-02	ci left: 5.765280e-02	ci right 5.844837e-02	k: 77206	n:1330000
KS ci ratio: 1.710490e-01	ci left: 3.609749e-04	ci right 4.292014e-04	k: 524	n:1330000
FAM13A   1330000 perm   1026 sec   (1297 perm/sec)   p_kst 3.939850e-04   p_cons 5.804962e-02   p_joint 9.774436e-05

Joint ci ratio: 3.398901e-01	ci left: 8.242101e-05	ci right 1.168162e-04	k: 132	n:1340000
Cons ci ratio: 1.364017e-02	ci left: 5.766061e-02	ci right 5.845324e-02	k: 77795	n:1340000
KS ci ratio: 1.702402e-01	ci left: 3.618531e-04	ci right 4.298890e-04	k: 529	n:1340000
FAM13A   1340000 perm   1038 sec   (1290 perm/sec)   p_kst 3.947761e-04   p_cons 5.805597e-02   p_joint 9.850746e-05

Joint ci ratio: 3.361202e-01	ci left: 8.384413e-05	ci right 1.183610e-04	k: 135	n:1350000
Cons ci ratio: 1.358675e-02	ci left: 5.768455e-02	ci right 5.847438e-02	k: 78406	n:1350000
KS ci ratio: 1.694427e-01	ci left: 3.627190e-04	ci right 4.305656e-04	k: 534	n:1350000
FAM13A   1350000 perm   1051 sec   (1284 perm/sec)   p_kst 3.955556e-04   p_cons 5.807852e-02   p_joint 1.000000e-04

Joint ci ratio: 3.336755e-01	ci left: 8.457457e-05	ci right 1.190845e-04	k: 137	n:1360000
Cons ci ratio: 1.353887e-02	ci left: 5.766857e-02	ci right 5.845538e-02	k: 78963	n:1360000
KS ci ratio: 1.686564e-01	ci left: 3.635729e-04	ci right 4.312315e-04	k: 539	n:1360000
FAM13A   1360000 perm   1064 sec   (1278 perm/sec)   p_kst 3.963235e-04   p_cons 5.806103e-02   p_joint 1.007353e-04

Joint ci ratio: 3.336756e-01	ci left: 8.395724e-05	ci right 1.182153e-04	k: 137	n:1370000
Cons ci ratio: 1.349276e-02	ci left: 5.764263e-02	ci right 5.842639e-02	k: 79506	n:1370000
KS ci ratio: 1.678809e-01	ci left: 3.644150e-04	ci right 4.318870e-04	k: 544	n:1370000
FAM13A   1370000 perm   1077 sec   (1272 perm/sec)   p_kst 3.970803e-04   p_cons 5.803358e-02   p_joint 1.000000e-04

Joint ci ratio: 3.336758e-01	ci left: 8.334885e-05	ci right 1.173587e-04	k: 137	n:1380000
Cons ci ratio: 1.344346e-02	ci left: 5.764670e-02	ci right 5.842762e-02	k: 80090	n:1380000
KS ci ratio: 1.671160e-01	ci left: 3.652456e-04	ci right 4.325323e-04	k: 549	n:1380000
FAM13A   1380000 perm   1090 sec   (1266 perm/sec)   p_kst 3.978261e-04   p_cons 5.803623e-02   p_joint 9.927536e-05

Joint ci ratio: 3.324733e-01	ci left: 8.340848e-05	ci right 1.172937e-04	k: 138	n:1390000
Cons ci ratio: 1.339434e-02	ci left: 5.765358e-02	ci right 5.843172e-02	k: 80678	n:1390000
KS ci ratio: 1.666621e-01	ci left: 3.646861e-04	ci right 4.316689e-04	k: 552	n:1390000
FAM13A   1390000 perm   1103 sec   (1260 perm/sec)   p_kst 3.971223e-04   p_cons 5.804173e-02   p_joint 9.928058e-05

Joint ci ratio: 3.301068e-01	ci left: 8.412247e-05	ci right 1.180029e-04	k: 140	n:1400000
Cons ci ratio: 1.334532e-02	ci left: 5.766392e-02	ci right 5.843933e-02	k: 81271	n:1400000
KS ci ratio: 1.659137e-01	ci left: 3.655040e-04	ci right 4.323055e-04	k: 557	n:1400000
FAM13A   1400000 perm   1116 sec   (1254 perm/sec)   p_kst 3.978571e-04   p_cons 5.805071e-02   p_joint 1.000000e-04

Joint ci ratio: 3.289424e-01	ci left: 8.417641e-05	ci right 1.179336e-04	k: 141	n:1410000
Cons ci ratio: 1.329865e-02	ci left: 5.765928e-02	ci right 5.843190e-02	k: 81843	n:1410000
KS ci ratio: 1.653222e-01	ci left: 3.656311e-04	ci right 4.321938e-04	k: 561	n:1410000
FAM13A   1410000 perm   1130 sec   (1248 perm/sec)   p_kst 3.978723e-04   p_cons 5.804468e-02   p_joint 1.000000e-04

Joint ci ratio: 3.289425e-01	ci left: 8.358362e-05	ci right 1.171031e-04	k: 141	n:1420000
Cons ci ratio: 1.324888e-02	ci left: 5.768419e-02	ci right 5.845423e-02	k: 82457	n:1420000
KS ci ratio: 1.650289e-01	ci left: 3.644064e-04	ci right 4.306168e-04	k: 563	n:1420000
FAM13A   1420000 perm   1143 sec   (1242 perm/sec)   p_kst 3.964789e-04   p_cons 5.806831e-02   p_joint 9.929577e-05

Joint ci ratio: 3.289426e-01	ci left: 8.299911e-05	ci right 1.162842e-04	k: 141	n:1430000
Cons ci ratio: 1.320253e-02	ci left: 5.768506e-02	ci right 5.845239e-02	k: 83037	n:1430000
KS ci ratio: 1.644468e-01	ci left: 3.645400e-04	ci right 4.305180e-04	k: 567	n:1430000
FAM13A   1430000 perm   1156 sec   (1237 perm/sec)   p_kst 3.965035e-04   p_cons 5.806783e-02   p_joint 9.860140e-05

Joint ci ratio: 3.266502e-01	ci left: 8.369734e-05	ci right 1.169795e-04	k: 143	n:1440000
Cons ci ratio: 1.315633e-02	ci left: 5.768869e-02	ci right 5.845337e-02	k: 83621	n:1440000
KS ci ratio: 1.633006e-01	ci left: 3.673362e-04	ci right 4.333114e-04	k: 575	n:1440000
FAM13A   1440000 perm   1170 sec   (1231 perm/sec)   p_kst 3.993056e-04   p_cons 5.807014e-02   p_joint 9.930556e-05

Joint ci ratio: 3.266503e-01	ci left: 8.312012e-05	ci right 1.161727e-04	k: 143	n:1450000
Cons ci ratio: 1.311235e-02	ci left: 5.767784e-02	ci right 5.843979e-02	k: 84184	n:1450000
KS ci ratio: 1.628771e-01	ci left: 3.667874e-04	ci right 4.324764e-04	k: 578	n:1450000
FAM13A   1450000 perm   1184 sec   (1225 perm/sec)   p_kst 3.986207e-04   p_cons 5.805793e-02   p_joint 9.862069e-05

Joint ci ratio: 3.266504e-01	ci left: 8.255080e-05	ci right 1.153770e-04	k: 143	n:1460000
Cons ci ratio: 1.306872e-02	ci left: 5.766782e-02	ci right 5.842709e-02	k: 84748	n:1460000
KS ci ratio: 1.620395e-01	ci left: 3.682177e-04	ci right 4.337907e-04	k: 584	n:1460000
FAM13A   1460000 perm   1197 sec   (1219 perm/sec)   p_kst 4.000000e-04   p_cons 5.804658e-02   p_joint 9.794521e-05

Joint ci ratio: 3.255221e-01	ci left: 8.261382e-05	ci right 1.153279e-04	k: 144	n:1470000
Cons ci ratio: 1.302326e-02	ci left: 5.767693e-02	ci right 5.843366e-02	k: 85340	n:1470000
KS ci ratio: 1.606718e-01	ci left: 3.722409e-04	ci right 4.379168e-04	k: 594	n:1470000
FAM13A   1470000 perm   1211 sec   (1214 perm/sec)   p_kst 4.040816e-04   p_cons 5.805442e-02   p_joint 9.795918e-05

Joint ci ratio: 3.222058e-01	ci left: 8.391788e-05	ci right 1.167399e-04	k: 147	n:1480000
Cons ci ratio: 1.298052e-02	ci left: 5.766706e-02	ci right 5.842116e-02	k: 85904	n:1480000
KS ci ratio: 1.598676e-01	ci left: 3.736173e-04	ci right 4.391744e-04	k: 600	n:1480000
FAM13A   1480000 perm   1225 sec   (1208 perm/sec)   p_kst 4.054054e-04   p_cons 5.804324e-02   p_joint 9.932432e-05

Joint ci ratio: 3.200504e-01	ci left: 8.458878e-05	ci right 1.174065e-04	k: 149	n:1490000
Cons ci ratio: 1.293922e-02	ci left: 5.764863e-02	ci right 5.840007e-02	k: 86455	n:1490000
KS ci ratio: 1.589445e-01	ci left: 3.756204e-04	ci right 4.411121e-04	k: 607	n:1490000
FAM13A   1490000 perm   1239 sec   (1203 perm/sec)   p_kst 4.073826e-04   p_cons 5.802349e-02   p_joint 1.000000e-04

Joint ci ratio: 3.189889e-01	ci left: 8.463806e-05	ci right 1.173438e-04	k: 150	n:1500000
Cons ci ratio: 1.289510e-02	ci left: 5.765770e-02	ci right 5.840668e-02	k: 87047	n:1500000
KS ci ratio: 1.584242e-01	ci left: 3.756770e-04	ci right 4.409439e-04	k: 611	n:1500000
FAM13A   1500000 perm   1252 sec   (1198 perm/sec)   p_kst 4.073333e-04   p_cons 5.803133e-02   p_joint 1.000000e-04

Joint ci ratio: 3.168971e-01	ci left: 8.529637e-05	ci right 1.179965e-04	k: 152	n:1510000
Cons ci ratio: 1.285072e-02	ci left: 5.767259e-02	ci right 5.841917e-02	k: 87648	n:1510000
KS ci ratio: 1.579090e-01	ci left: 3.757333e-04	ci right 4.407775e-04	k: 615	n:1510000
FAM13A   1510000 perm   1267 sec   (1192 perm/sec)   p_kst 4.072848e-04   p_cons 5.804503e-02   p_joint 1.006623e-04

Joint ci ratio: 3.158665e-01	ci left: 8.534087e-05	ci right 1.179302e-04	k: 153	n:1520000
Cons ci ratio: 1.281003e-02	ci left: 5.765975e-02	ci right 5.840378e-02	k: 88207	n:1520000
KS ci ratio: 1.577812e-01	ci left: 3.738932e-04	ci right 4.385615e-04	k: 616	n:1520000
FAM13A   1520000 perm   1281 sec   (1187 perm/sec)   p_kst 4.052632e-04   p_cons 5.803092e-02   p_joint 1.006579e-04

Joint ci ratio: 3.158666e-01	ci left: 8.478308e-05	ci right 1.171594e-04	k: 153	n:1530000
Cons ci ratio: 1.276682e-02	ci left: 5.767184e-02	ci right 5.841349e-02	k: 88804	n:1530000
KS ci ratio: 1.571457e-01	ci left: 3.745887e-04	ci right 4.390917e-04	k: 621	n:1530000
FAM13A   1530000 perm   1295 sec   (1181 perm/sec)   p_kst 4.058824e-04   p_cons 5.804183e-02   p_joint 1.000000e-04

Joint ci ratio: 3.128340e-01	ci left: 8.602694e-05	ci right 1.184998e-04	k: 156	n:1540000
Cons ci ratio: 1.272428e-02	ci left: 5.768183e-02	ci right 5.842113e-02	k: 89398	n:1540000
KS ci ratio: 1.565178e-01	ci left: 3.752756e-04	ci right 4.396145e-04	k: 626	n:1540000
FAM13A   1540000 perm   1309 sec   (1176 perm/sec)   p_kst 4.064935e-04   p_cons 5.805065e-02   p_joint 1.012987e-04

Joint ci ratio: 3.118425e-01	ci left: 8.606653e-05	ci right 1.184309e-04	k: 157	n:1550000
Cons ci ratio: 1.268732e-02	ci left: 5.764732e-02	ci right 5.838401e-02	k: 89923	n:1550000
KS ci ratio: 1.558974e-01	ci left: 3.759542e-04	ci right 4.401301e-04	k: 631	n:1550000
FAM13A   1550000 perm   1323 sec   (1171 perm/sec)   p_kst 4.070968e-04   p_cons 5.801484e-02   p_joint 1.012903e-04

Joint ci ratio: 3.089232e-01	ci left: 8.728814e-05	ci right 1.197441e-04	k: 160	n:1560000
Cons ci ratio: 1.264727e-02	ci left: 5.764265e-02	ci right 5.837694e-02	k: 90494	n:1560000
KS ci ratio: 1.551625e-01	ci left: 3.772407e-04	ci right 4.413045e-04	k: 637	n:1560000
FAM13A   1560000 perm   1338 sec   (1166 perm/sec)   p_kst 4.083333e-04   p_cons 5.800897e-02   p_joint 1.025641e-04

Joint ci ratio: 2.010674e-01	ci left: 2.177091e-04	ci right 2.669679e-04	k: 379	n:1570000
Cons ci ratio: 1.260576e-02	ci left: 5.765392e-02	ci right 5.838593e-02	k: 91090	n:1570000
KS ci ratio: 1.547990e-01	ci left: 3.766747e-04	ci right 4.404785e-04	k: 640	n:1570000
FAM13A   1570000 perm   1356 sec   (1158 perm/sec)   p_kst 4.076433e-04   p_cons 5.801911e-02   p_joint 2.414013e-04

Joint ci ratio: 2.002783e-01	ci left: 2.181346e-04	ci right 2.672722e-04	k: 382	n:1580000
Cons ci ratio: 1.256197e-02	ci left: 5.768840e-02	ci right 5.841828e-02	k: 91723	n:1580000
KS ci ratio: 1.543183e-01	ci left: 3.767244e-04	ci right 4.403201e-04	k: 644	n:1580000
FAM13A   1580000 perm   1370 sec   (1153 perm/sec)   p_kst 4.075949e-04   p_cons 5.805253e-02   p_joint 2.417722e-04

Joint ci ratio: 1.994985e-01	ci left: 2.185550e-04	ci right 2.675723e-04	k: 385	n:1590000
Cons ci ratio: 1.252006e-02	ci left: 5.770991e-02	ci right 5.843761e-02	k: 92336	n:1590000
KS ci ratio: 1.539607e-01	ci left: 3.761691e-04	ci right 4.395103e-04	k: 647	n:1590000
FAM13A   1590000 perm   1385 sec   (1148 perm/sec)   p_kst 4.069182e-04   p_cons 5.807296e-02   p_joint 2.421384e-04

Joint ci ratio: 1.992406e-01	ci left: 2.177828e-04	ci right 2.665562e-04	k: 386	n:1600000
Cons ci ratio: 1.248171e-02	ci left: 5.770374e-02	ci right 5.842911e-02	k: 92905	n:1600000
KS ci ratio: 1.534877e-01	ci left: 3.762218e-04	ci right 4.393595e-04	k: 651	n:1600000
FAM13A   1600000 perm   1401 sec   (1142 perm/sec)   p_kst 4.068750e-04   p_cons 5.806563e-02   p_joint 2.412500e-04

Joint ci ratio: 1.989838e-01	ci left: 2.170203e-04	ci right 2.655526e-04	k: 387	n:1610000
Cons ci ratio: 1.244527e-02	ci left: 5.768402e-02	ci right 5.840701e-02	k: 93452	n:1610000
KS ci ratio: 1.527862e-01	ci left: 3.774690e-04	ci right 4.404999e-04	k: 657	n:1610000
FAM13A   1610000 perm   1415 sec   (1137 perm/sec)   p_kst 4.080745e-04   p_cons 5.804472e-02   p_joint 2.403727e-04

Joint ci ratio: 1.979659e-01	ci left: 2.180271e-04	ci right 2.665050e-04	k: 391	n:1620000
Cons ci ratio: 1.240361e-02	ci left: 5.771317e-02	ci right 5.843409e-02	k: 94078	n:1620000
KS ci ratio: 1.522090e-01	ci left: 3.781076e-04	ci right 4.409849e-04	k: 662	n:1620000
FAM13A   1620000 perm   1430 sec   (1132 perm/sec)   p_kst 4.086420e-04   p_cons 5.807284e-02   p_joint 2.413580e-04

Joint ci ratio: 1.974628e-01	ci left: 2.178558e-04	ci right 2.661577e-04	k: 393	n:1630000
Cons ci ratio: 1.236396e-02	ci left: 5.772790e-02	ci right 5.844668e-02	k: 94681	n:1630000
KS ci ratio: 1.519800e-01	ci left: 3.769682e-04	ci right 4.395531e-04	k: 664	n:1630000
FAM13A   1630000 perm   1445 sec   (1128 perm/sec)   p_kst 4.073620e-04   p_cons 5.808650e-02   p_joint 2.411043e-04

Joint ci ratio: 1.964679e-01	ci left: 2.188461e-04	ci right 2.670939e-04	k: 397	n:1640000
Cons ci ratio: 1.232799e-02	ci left: 5.771326e-02	ci right 5.842976e-02	k: 95236	n:1640000
KS ci ratio: 1.514118e-01	ci left: 3.776027e-04	ci right 4.400373e-04	k: 669	n:1640000
FAM13A   1640000 perm   1460 sec   (1123 perm/sec)   p_kst 4.079268e-04   p_cons 5.807073e-02   p_joint 2.420732e-04

Joint ci ratio: 1.957316e-01	ci left: 2.192487e-04	ci right 2.673825e-04	k: 400	n:1650000
Cons ci ratio: 1.228994e-02	ci left: 5.771996e-02	ci right 5.843432e-02	k: 95826	n:1650000
KS ci ratio: 1.508500e-01	ci left: 3.782299e-04	ci right 4.405152e-04	k: 674	n:1650000
FAM13A   1650000 perm   1476 sec   (1118 perm/sec)   p_kst 4.084848e-04   p_cons 5.807636e-02   p_joint 2.424242e-04

Joint ci ratio: 1.950035e-01	ci left: 2.196468e-04	ci right 2.676673e-04	k: 403	n:1660000
Cons ci ratio: 1.225420e-02	ci left: 5.770917e-02	ci right 5.842129e-02	k: 96387	n:1660000
KS ci ratio: 1.502943e-01	ci left: 3.788500e-04	ci right 4.409870e-04	k: 679	n:1660000
FAM13A   1660000 perm   1492 sec   (1112 perm/sec)   p_kst 4.090361e-04   p_cons 5.806446e-02   p_joint 2.427711e-04

Joint ci ratio: 1.945226e-01	ci left: 2.194707e-04	ci right 2.673204e-04	k: 405	n:1670000
Cons ci ratio: 1.221649e-02	ci left: 5.771880e-02	ci right 5.842884e-02	k: 96982	n:1670000
KS ci ratio: 1.499639e-01	ci left: 3.783103e-04	ci right 4.402102e-04	k: 682	n:1670000
FAM13A   1670000 perm   1512 sec   (1105 perm/sec)   p_kst 4.083832e-04   p_cons 5.807305e-02   p_joint 2.425150e-04

Joint ci ratio: 1.935713e-01	ci left: 2.204297e-04	ci right 2.682257e-04	k: 409	n:1680000
Cons ci ratio: 1.218099e-02	ci left: 5.771171e-02	ci right 5.841958e-02	k: 97549	n:1680000
KS ci ratio: 1.495267e-01	ci left: 3.783502e-04	ci right 4.400600e-04	k: 686	n:1680000
FAM13A   1680000 perm   1528 sec   (1100 perm/sec)   p_kst 4.083333e-04   p_cons 5.806488e-02   p_joint 2.434524e-04

Joint ci ratio: 1.933358e-01	ci left: 2.196884e-04	ci right 2.672589e-04	k: 410	n:1690000
Cons ci ratio: 1.214396e-02	ci left: 5.772122e-02	ci right 5.842704e-02	k: 98144	n:1690000
KS ci ratio: 1.492013e-01	ci left: 3.778203e-04	ci right 4.392975e-04	k: 689	n:1690000
FAM13A   1690000 perm   1543 sec   (1095 perm/sec)   p_kst 4.076923e-04   p_cons 5.807337e-02   p_joint 2.426036e-04

Joint ci ratio: 1.926340e-01	ci left: 2.200756e-04	ci right 2.675367e-04	k: 413	n:1700000
Cons ci ratio: 1.210908e-02	ci left: 5.771420e-02	ci right 5.841790e-02	k: 98711	n:1700000
KS ci ratio: 1.487707e-01	ci left: 3.778630e-04	ci right 4.391540e-04	k: 693	n:1700000
FAM13A   1700000 perm   1559 sec   (1090 perm/sec)   p_kst 4.076471e-04   p_cons 5.806529e-02   p_joint 2.429412e-04

Joint ci ratio: 1.725423e-01	ci left: 2.757203e-04	ci right 3.283355e-04	k: 515	n:1710000
Cons ci ratio: 1.207257e-02	ci left: 5.772476e-02	ci right 5.842645e-02	k: 99308	n:1710000
KS ci ratio: 1.481317e-01	ci left: 3.790317e-04	ci right 4.402248e-04	k: 699	n:1710000
FAM13A   1710000 perm   1575 sec   (1086 perm/sec)   p_kst 4.087719e-04   p_cons 5.807485e-02   p_joint 3.011696e-04

Joint ci ratio: 1.720429e-01	ci left: 2.757863e-04	ci right 3.282459e-04	k: 518	n:1720000
Cons ci ratio: 1.203613e-02	ci left: 5.773752e-02	ci right 5.843723e-02	k: 99909	n:1720000
KS ci ratio: 1.477103e-01	ci left: 3.790676e-04	ci right 4.400770e-04	k: 703	n:1720000
FAM13A   1720000 perm   1591 sec   (1081 perm/sec)   p_kst 4.087209e-04   p_cons 5.808663e-02   p_joint 3.011628e-04

Joint ci ratio: 1.712200e-01	ci left: 2.769582e-04	ci right 3.293627e-04	k: 523	n:1730000
Cons ci ratio: 1.199856e-02	ci left: 5.776339e-02	ci right 5.846121e-02	k: 100533	n:1730000
KS ci ratio: 1.471885e-01	ci left: 3.796600e-04	ci right 4.405299e-04	k: 708	n:1730000
FAM13A   1730000 perm   1607 sec   (1077 perm/sec)   p_kst 4.092486e-04   p_cons 5.811156e-02   p_joint 3.023121e-04

Joint ci ratio: 1.702479e-01	ci left: 2.786674e-04	ci right 3.310652e-04	k: 529	n:1740000
Cons ci ratio: 1.196360e-02	ci left: 5.776833e-02	ci right 5.846417e-02	k: 101121	n:1740000
KS ci ratio: 1.465695e-01	ci left: 3.807996e-04	ci right 4.415730e-04	k: 714	n:1740000
FAM13A   1740000 perm   1623 sec   (1072 perm/sec)   p_kst 4.103448e-04   p_cons 5.811552e-02   p_joint 3.040230e-04

Joint ci ratio: 1.699277e-01	ci left: 2.781692e-04	ci right 3.303649e-04	k: 531	n:1750000
Cons ci ratio: 1.193037e-02	ci left: 5.776012e-02	ci right 5.845391e-02	k: 101686	n:1750000
KS ci ratio: 1.462630e-01	ci left: 3.802751e-04	ci right 4.408268e-04	k: 717	n:1750000
FAM13A   1750000 perm   1639 sec   (1067 perm/sec)   p_kst 4.097143e-04   p_cons 5.810629e-02   p_joint 3.034286e-04

Joint ci ratio: 1.694506e-01	ci left: 2.782209e-04	ci right 3.302647e-04	k: 534	n:1760000
Cons ci ratio: 1.189983e-02	ci left: 5.772991e-02	ci right 5.842155e-02	k: 102212	n:1760000
KS ci ratio: 1.459585e-01	ci left: 3.797567e-04	ci right 4.400889e-04	k: 720	n:1760000
FAM13A   1760000 perm   1656 sec   (1063 perm/sec)   p_kst 4.090909e-04   p_cons 5.807500e-02   p_joint 3.034091e-04

Joint ci ratio: 1.689775e-01	ci left: 2.782722e-04	ci right 3.301654e-04	k: 537	n:1770000
Cons ci ratio: 1.186591e-02	ci left: 5.773328e-02	ci right 5.842297e-02	k: 102797	n:1770000
KS ci ratio: 1.456558e-01	ci left: 3.792442e-04	ci right 4.393593e-04	k: 723	n:1770000
FAM13A   1770000 perm   1673 sec   (1058 perm/sec)   p_kst 4.084746e-04   p_cons 5.807740e-02   p_joint 3.033898e-04

Joint ci ratio: 1.689776e-01	ci left: 2.767088e-04	ci right 3.283106e-04	k: 537	n:1780000
Cons ci ratio: 1.183234e-02	ci left: 5.773605e-02	ci right 5.842382e-02	k: 103381	n:1780000
KS ci ratio: 1.456560e-01	ci left: 3.771136e-04	ci right 4.368910e-04	k: 723	n:1780000
FAM13A   1780000 perm   1689 sec   (1054 perm/sec)   p_kst 4.061798e-04   p_cons 5.807921e-02   p_joint 3.016854e-04

Joint ci ratio: 1.686644e-01	ci left: 2.762331e-04	ci right 3.276409e-04	k: 539	n:1790000
Cons ci ratio: 1.180164e-02	ci left: 5.771484e-02	ci right 5.840056e-02	k: 103922	n:1790000
KS ci ratio: 1.449568e-01	ci left: 3.787753e-04	ci right 4.385029e-04	k: 730	n:1790000
FAM13A   1790000 perm   1705 sec   (1050 perm/sec)   p_kst 4.078212e-04   p_cons 5.805698e-02   p_joint 3.011173e-04

Joint ci ratio: 1.686646e-01	ci left: 2.746984e-04	ci right 3.258207e-04	k: 539	n:1800000
Cons ci ratio: 1.177028e-02	ci left: 5.770218e-02	ci right 5.838591e-02	k: 104478	n:1800000
KS ci ratio: 1.448579e-01	ci left: 3.772064e-04	ci right 4.366425e-04	k: 731	n:1800000
FAM13A   1800000 perm   1722 sec   (1045 perm/sec)   p_kst 4.061111e-04   p_cons 5.804333e-02   p_joint 2.994444e-04

Joint ci ratio: 1.681980e-01	ci left: 2.747683e-04	ci right 3.257479e-04	k: 542	n:1810000
Cons ci ratio: 1.173650e-02	ci left: 5.771445e-02	ci right 5.839636e-02	k: 105079	n:1810000
KS ci ratio: 1.443656e-01	ci left: 3.777849e-04	ci right 4.370924e-04	k: 736	n:1810000
FAM13A   1810000 perm   1739 sec   (1041 perm/sec)   p_kst 4.066298e-04   p_cons 5.805470e-02   p_joint 2.994475e-04

Joint ci ratio: 1.672762e-01	ci left: 2.764170e-04	ci right 3.273930e-04	k: 548	n:1820000
Cons ci ratio: 1.170495e-02	ci left: 5.770851e-02	ci right 5.838850e-02	k: 105647	n:1820000
KS ci ratio: 1.436848e-01	ci left: 3.794167e-04	ci right 4.386754e-04	k: 743	n:1820000
FAM13A   1820000 perm   1755 sec   (1037 perm/sec)   p_kst 4.082418e-04   p_cons 5.804780e-02   p_joint 3.010989e-04

Joint ci ratio: 1.669724e-01	ci left: 2.759537e-04	ci right 3.267426e-04	k: 550	n:1830000
Cons ci ratio: 1.167301e-02	ci left: 5.770863e-02	ci right 5.838675e-02	k: 106226	n:1830000
KS ci ratio: 1.433960e-01	ci left: 3.789238e-04	ci right 4.379765e-04	k: 746	n:1830000
FAM13A   1830000 perm   1772 sec   (1033 perm/sec)   p_kst 4.076503e-04   p_cons 5.804699e-02   p_joint 3.005464e-04

Joint ci ratio: 1.665197e-01	ci left: 2.760163e-04	ci right 3.266652e-04	k: 553	n:1840000
Cons ci ratio: 1.164191e-02	ci left: 5.770334e-02	ci right 5.837958e-02	k: 106795	n:1840000
KS ci ratio: 1.428235e-01	ci left: 3.800086e-04	ci right 4.389737e-04	k: 752	n:1840000
FAM13A   1840000 perm   1788 sec   (1029 perm/sec)   p_kst 4.086957e-04   p_cons 5.804076e-02   p_joint 3.005435e-04

Joint ci ratio: 1.660707e-01	ci left: 2.760785e-04	ci right 3.265885e-04	k: 556	n:1850000
Cons ci ratio: 1.161261e-02	ci left: 5.768354e-02	ci right 5.835784e-02	k: 107337	n:1850000
KS ci ratio: 1.424456e-01	ci left: 3.800395e-04	ci right 4.388402e-04	k: 756	n:1850000
FAM13A   1850000 perm   1805 sec   (1025 perm/sec)   p_kst 4.086486e-04   p_cons 5.802000e-02   p_joint 3.005405e-04

Joint ci ratio: 1.653302e-01	ci left: 2.771709e-04	ci right 3.276322e-04	k: 561	n:1860000
Cons ci ratio: 1.158097e-02	ci left: 5.768809e-02	ci right 5.836059e-02	k: 107924	n:1860000
KS ci ratio: 1.418844e-01	ci left: 3.811074e-04	ci right 4.398212e-04	k: 762	n:1860000
FAM13A   1860000 perm   1822 sec   (1021 perm/sec)   p_kst 4.096774e-04   p_cons 5.802366e-02   p_joint 3.016129e-04

Joint ci ratio: 1.651834e-01	ci left: 2.762013e-04	ci right 3.264370e-04	k: 562	n:1870000
Cons ci ratio: 1.154811e-02	ci left: 5.770647e-02	ci right 5.837726e-02	k: 108537	n:1870000
KS ci ratio: 1.416989e-01	ci left: 3.801009e-04	ci right 4.385767e-04	k: 764	n:1870000
FAM13A   1870000 perm   1839 sec   (1017 perm/sec)   p_kst 4.085561e-04   p_cons 5.804118e-02   p_joint 3.005348e-04

Joint ci ratio: 1.576596e-01	ci left: 3.028067e-04	ci right 3.551357e-04	k: 617	n:1880000
Cons ci ratio: 1.151917e-02	ci left: 5.769016e-02	ci right 5.835907e-02	k: 109085	n:1880000
KS ci ratio: 1.410549e-01	ci left: 3.816708e-04	ci right 4.400989e-04	k: 771	n:1880000
FAM13A   1880000 perm   1856 sec   (1013 perm/sec)   p_kst 4.101064e-04   p_cons 5.802394e-02   p_joint 3.281915e-04

Joint ci ratio: 1.568996e-01	ci left: 3.042542e-04	ci right 3.565561e-04	k: 623	n:1890000
Cons ci ratio: 1.148789e-02	ci left: 5.769831e-02	ci right 5.836548e-02	k: 109679	n:1890000
KS ci ratio: 1.405098e-01	ci left: 3.827142e-04	ci right 4.410566e-04	k: 777	n:1890000
FAM13A   1890000 perm   1875 sec   (1008 perm/sec)   p_kst 4.111111e-04   p_cons 5.803122e-02   p_joint 3.296296e-04

Joint ci ratio: 1.567742e-01	ci left: 3.031585e-04	ci right 3.552264e-04	k: 624	n:1900000
Cons ci ratio: 1.145510e-02	ci left: 5.772316e-02	ci right 5.838871e-02	k: 110305	n:1900000
KS ci ratio: 1.404197e-01	ci left: 3.812077e-04	ci right 4.392801e-04	k: 778	n:1900000
FAM13A   1900000 perm   1893 sec   (1004 perm/sec)   p_kst 4.094737e-04   p_cons 5.805526e-02   p_joint 3.284211e-04

Joint ci ratio: 1.631670e-01	ci left: 2.774457e-04	ci right 3.272313e-04	k: 576	n:1910000
Cons ci ratio: 1.142740e-02	ci left: 5.770181e-02	ci right 5.836550e-02	k: 110843	n:1910000
KS ci ratio: 1.401502e-01	ci left: 3.807274e-04	ci right 4.386060e-04	k: 781	n:1910000
FAM13A   1910000 perm   1910 sec   (1000 perm/sec)   p_kst 4.089005e-04   p_cons 5.803298e-02   p_joint 3.015707e-04

Joint ci ratio: 1.628850e-01	ci left: 2.769998e-04	ci right 3.266111e-04	k: 578	n:1920000
Cons ci ratio: 1.139746e-02	ci left: 5.770406e-02	ci right 5.836602e-02	k: 111426	n:1920000
KS ci ratio: 1.398822e-01	ci left: 3.802522e-04	ci right 4.379388e-04	k: 784	n:1920000
FAM13A   1920000 perm   1928 sec   (996 perm/sec)   p_kst 4.083333e-04   p_cons 5.803437e-02   p_joint 3.010417e-04

Joint ci ratio: 1.627446e-01	ci left: 2.760616e-04	ci right 3.254581e-04	k: 579	n:1930000
Cons ci ratio: 1.136942e-02	ci left: 5.769027e-02	ci right 5.835043e-02	k: 111978	n:1930000
KS ci ratio: 1.396157e-01	ci left: 3.797821e-04	ci right 4.372784e-04	k: 787	n:1930000
FAM13A   1930000 perm   1946 sec   (992 perm/sec)   p_kst 4.077720e-04   p_cons 5.801969e-02   p_joint 3.000000e-04

Joint ci ratio: 1.662212e-01	ci left: 2.627765e-04	ci right 3.109008e-04	k: 555	n:1940000
Cons ci ratio: 1.133828e-02	ci left: 5.770850e-02	ci right 5.836705e-02	k: 112592	n:1940000
KS ci ratio: 1.393507e-01	ci left: 3.793168e-04	ci right 4.366247e-04	k: 790	n:1940000
FAM13A   1940000 perm   1964 sec   (988 perm/sec)   p_kst 4.072165e-04   p_cons 5.803711e-02   p_joint 2.860825e-04

Joint ci ratio: 1.548052e-01	ci left: 3.032705e-04	ci right 3.546428e-04	k: 640	n:1950000
Cons ci ratio: 1.130823e-02	ci left: 5.771836e-02	ci right 5.837526e-02	k: 113190	n:1950000
KS ci ratio: 1.385645e-01	ci left: 3.818266e-04	ci right 4.391613e-04	k: 799	n:1950000
FAM13A   1950000 perm   1982 sec   (984 perm/sec)   p_kst 4.097436e-04   p_cons 5.804615e-02   p_joint 3.282051e-04

Joint ci ratio: 1.612229e-01	ci left: 2.772210e-04	ci right 3.263161e-04	k: 590	n:1960000
Cons ci ratio: 1.128106e-02	ci left: 5.770268e-02	ci right 5.835781e-02	k: 113738	n:1960000
KS ci ratio: 1.383054e-01	ci left: 3.813561e-04	ci right 4.385043e-04	k: 802	n:1960000
FAM13A   1960000 perm   1999 sec   (980 perm/sec)   p_kst 4.091837e-04   p_cons 5.802959e-02   p_joint 3.010204e-04

Joint ci ratio: 1.610868e-01	ci left: 2.763009e-04	ci right 3.251878e-04	k: 591	n:1970000
Cons ci ratio: 1.125152e-02	ci left: 5.771196e-02	ci right 5.836548e-02	k: 114335	n:1970000
KS ci ratio: 1.381336e-01	ci left: 3.804004e-04	ci right 4.373287e-04	k: 804	n:1970000
FAM13A   1970000 perm   2017 sec   (976 perm/sec)   p_kst 4.081218e-04   p_cons 5.803807e-02   p_joint 3.000000e-04

Joint ci ratio: 1.606801e-01	ci left: 2.763596e-04	ci right 3.251215e-04	k: 594	n:1980000
Cons ci ratio: 1.122278e-02	ci left: 5.771562e-02	ci right 5.836749e-02	k: 114921	n:1980000
KS ci ratio: 1.377917e-01	ci left: 3.804296e-04	ci right 4.372099e-04	k: 808	n:1980000
FAM13A   1980000 perm   2036 sec   (973 perm/sec)   p_kst 4.080808e-04   p_cons 5.804091e-02   p_joint 3.000000e-04

Joint ci ratio: 1.601427e-01	ci left: 2.769002e-04	ci right 3.255784e-04	k: 598	n:1990000
Cons ci ratio: 1.119359e-02	ci left: 5.772575e-02	ci right 5.837604e-02	k: 115520	n:1990000
KS ci ratio: 1.374523e-01	ci left: 3.804588e-04	ci right 4.370920e-04	k: 812	n:1990000
FAM13A   1990000 perm   2054 sec   (969 perm/sec)   p_kst 4.080402e-04   p_cons 5.805025e-02   p_joint 3.005025e-04

Joint ci ratio: 1.596106e-01	ci left: 2.774357e-04	ci right 3.260304e-04	k: 602	n:2000000
Cons ci ratio: 1.116544e-02	ci left: 5.772781e-02	ci right 5.837647e-02	k: 116103	n:2000000
KS ci ratio: 1.371154e-01	ci left: 3.804878e-04	ci right 4.369752e-04	k: 816	n:2000000
FAM13A   2000000 perm   2072 sec   (965 perm/sec)   p_kst 4.080000e-04   p_cons 5.805150e-02   p_joint 3.010000e-04

Joint ci ratio: 1.594785e-01	ci left: 2.765331e-04	ci right 3.249258e-04	k: 603	n:2010000
Cons ci ratio: 1.113730e-02	ci left: 5.773183e-02	ci right 5.837889e-02	k: 116690	n:2010000
KS ci ratio: 1.370317e-01	ci left: 3.790753e-04	ci right 4.353158e-04	k: 817	n:2010000
FAM13A   2010000 perm   2091 sec   (961 perm/sec)   p_kst 4.064677e-04   p_cons 5.805473e-02   p_joint 3.000000e-04

Joint ci ratio: 1.630271e-01	ci left: 2.628120e-04	ci right 3.099272e-04	k: 577	n:2020000
Cons ci ratio: 1.110923e-02	ci left: 5.773730e-02	ci right 5.838278e-02	k: 117280	n:2020000
KS ci ratio: 1.368645e-01	ci left: 3.781548e-04	ci right 4.341848e-04	k: 819	n:2020000
FAM13A   2020000 perm   2109 sec   (958 perm/sec)   p_kst 4.054455e-04   p_cons 5.805941e-02   p_joint 2.856436e-04

Joint ci ratio: 1.623265e-01	ci left: 2.638801e-04	ci right 3.109637e-04	k: 582	n:2030000
Cons ci ratio: 1.108051e-02	ci left: 5.775107e-02	ci right 5.839502e-02	k: 117887	n:2030000
KS ci ratio: 1.362016e-01	ci left: 3.800983e-04	ci right 4.361213e-04	k: 827	n:2030000
FAM13A   2030000 perm   2128 sec   (954 perm/sec)   p_kst 4.073892e-04   p_cons 5.807241e-02   p_joint 2.866995e-04

Joint ci ratio: 1.620488e-01	ci left: 2.635272e-04	ci right 3.104595e-04	k: 584	n:2040000
Cons ci ratio: 1.105301e-02	ci left: 5.775492e-02	ci right 5.839731e-02	k: 118474	n:2040000
KS ci ratio: 1.360375e-01	ci left: 3.791821e-04	ci right 4.349973e-04	k: 829	n:2040000
FAM13A   2040000 perm   2147 sec   (950 perm/sec)   p_kst 4.063725e-04   p_cons 5.807549e-02   p_joint 2.862745e-04

Joint ci ratio: 1.619105e-01	ci left: 2.627097e-04	ci right 3.094527e-04	k: 585	n:2050000
Cons ci ratio: 1.102630e-02	ci left: 5.775290e-02	ci right 5.839371e-02	k: 119049	n:2050000
KS ci ratio: 1.359557e-01	ci left: 3.778036e-04	ci right 4.333797e-04	k: 830	n:2050000
FAM13A   2050000 perm   2166 sec   (946 perm/sec)   p_kst 4.048780e-04   p_cons 5.807268e-02   p_joint 2.853659e-04

Joint ci ratio: 1.619106e-01	ci left: 2.614344e-04	ci right 3.079505e-04	k: 585	n:2060000
Cons ci ratio: 1.099954e-02	ci left: 5.775333e-02	ci right 5.839257e-02	k: 119629	n:2060000
KS ci ratio: 1.358741e-01	ci left: 3.764385e-04	ci right 4.317779e-04	k: 831	n:2060000
FAM13A   2060000 perm   2185 sec   (943 perm/sec)   p_kst 4.033981e-04   p_cons 5.807233e-02   p_joint 2.839806e-04

Joint ci ratio: 1.617727e-01	ci left: 2.606350e-04	ci right 3.069655e-04	k: 586	n:2070000
Cons ci ratio: 1.097264e-02	ci left: 5.775712e-02	ci right 5.839484e-02	k: 120216	n:2070000
KS ci ratio: 1.357926e-01	ci left: 3.750866e-04	ci right 4.301915e-04	k: 832	n:2070000
FAM13A   2070000 perm   2205 sec   (939 perm/sec)   p_kst 4.019324e-04   p_cons 5.807536e-02   p_joint 2.830918e-04

Joint ci ratio: 1.616352e-01	ci left: 2.598432e-04	ci right 3.059899e-04	k: 587	n:2080000
Cons ci ratio: 1.094843e-02	ci left: 5.773595e-02	ci right 5.837201e-02	k: 120751	n:2080000
KS ci ratio: 1.353868e-01	ci left: 3.756056e-04	ci right 4.306086e-04	k: 837	n:2080000
FAM13A   2080000 perm   2224 sec   (935 perm/sec)   p_kst 4.024038e-04   p_cons 5.805337e-02   p_joint 2.822115e-04

Joint ci ratio: 1.612244e-01	ci left: 2.599774e-04	ci right 3.060192e-04	k: 590	n:2090000
Cons ci ratio: 1.092123e-02	ci left: 5.774647e-02	ci right 5.838107e-02	k: 121352	n:2090000
KS ci ratio: 1.351452e-01	ci left: 3.751953e-04	ci right 4.300323e-04	k: 840	n:2090000
FAM13A   2090000 perm   2243 sec   (932 perm/sec)   p_kst 4.019139e-04   p_cons 5.806316e-02   p_joint 2.822967e-04

Joint ci ratio: 1.605466e-01	ci left: 2.610245e-04	ci right 3.070387e-04	k: 595	n:2100000
Cons ci ratio: 1.089399e-02	ci left: 5.775928e-02	ci right 5.839242e-02	k: 121958	n:2100000
KS ci ratio: 1.347452e-01	ci left: 3.757092e-04	ci right 4.304458e-04	k: 845	n:2100000
FAM13A   2100000 perm   2264 sec   (928 perm/sec)   p_kst 4.023810e-04   p_cons 5.807524e-02   p_joint 2.833333e-04

Joint ci ratio: 1.597444e-01	ci left: 2.625171e-04	ci right 3.085409e-04	k: 601	n:2110000
Cons ci ratio: 1.086832e-02	ci left: 5.775825e-02	ci right 5.838988e-02	k: 122535	n:2110000
KS ci ratio: 1.340340e-01	ci left: 3.780506e-04	ci right 4.328144e-04	k: 854	n:2110000
FAM13A   2110000 perm   2283 sec   (924 perm/sec)   p_kst 4.047393e-04   p_cons 5.807346e-02   p_joint 2.848341e-04

Joint ci ratio: 1.592163e-01	ci left: 2.630903e-04	ci right 3.090476e-04	k: 605	n:2120000
Cons ci ratio: 1.084255e-02	ci left: 5.776006e-02	ci right 5.839020e-02	k: 123118	n:2120000
KS ci ratio: 1.336437e-01	ci left: 3.785469e-04	ci right 4.332103e-04	k: 859	n:2120000
FAM13A   2120000 perm   2302 sec   (921 perm/sec)   p_kst 4.051887e-04   p_cons 5.807453e-02   p_joint 2.853774e-04

Joint ci ratio: 1.583045e-01	ci left: 2.650110e-04	ci right 3.110135e-04	k: 612	n:2130000
Cons ci ratio: 1.081776e-02	ci left: 5.775390e-02	ci right 5.838252e-02	k: 123684	n:2130000
KS ci ratio: 1.327969e-01	ci left: 3.817619e-04	ci right 4.365127e-04	k: 870	n:2130000
FAM13A   2130000 perm   2322 sec   (917 perm/sec)   p_kst 4.084507e-04   p_cons 5.806761e-02   p_joint 2.873239e-04

Joint ci ratio: 1.538501e-01	ci left: 2.799383e-04	ci right 3.270387e-04	k: 648	n:2140000
Cons ci ratio: 1.079096e-02	ci left: 5.776969e-02	ci right 5.839692e-02	k: 124297	n:2140000
KS ci ratio: 1.321911e-01	ci left: 3.835924e-04	ci right 4.383350e-04	k: 878	n:2140000
FAM13A   2140000 perm   2341 sec   (914 perm/sec)   p_kst 4.102804e-04   p_cons 5.808271e-02   p_joint 3.028037e-04

Joint ci ratio: 1.534957e-01	ci left: 2.799780e-04	ci right 3.269666e-04	k: 651	n:2150000
Cons ci ratio: 1.076615e-02	ci left: 5.776726e-02	ci right 5.839301e-02	k: 124871	n:2150000
KS ci ratio: 1.319662e-01	ci left: 3.831575e-04	ci right 4.377377e-04	k: 881	n:2150000
FAM13A   2150000 perm   2360 sec   (911 perm/sec)   p_kst 4.097674e-04   p_cons 5.807953e-02   p_joint 3.027907e-04

Joint ci ratio: 1.533782e-01	ci left: 2.791269e-04	ci right 3.259336e-04	k: 652	n:2160000
Cons ci ratio: 1.073978e-02	ci left: 5.778239e-02	ci right 5.840676e-02	k: 125483	n:2160000
KS ci ratio: 1.318169e-01	ci left: 3.822790e-04	ci right 4.366676e-04	k: 883	n:2160000
FAM13A   2160000 perm   2380 sec   (908 perm/sec)   p_kst 4.087963e-04   p_cons 5.809398e-02   p_joint 3.018519e-04

Joint ci ratio: 1.525626e-01	ci left: 2.809430e-04	ci right 3.277807e-04	k: 659	n:2170000
Cons ci ratio: 1.071699e-02	ci left: 5.776291e-02	ci right 5.838574e-02	k: 126020	n:2170000
KS ci ratio: 1.312243e-01	ci left: 3.840827e-04	ci right 4.384632e-04	k: 891	n:2170000
FAM13A   2170000 perm   2399 sec   (905 perm/sec)   p_kst 4.105991e-04   p_cons 5.807373e-02   p_joint 3.036866e-04

Joint ci ratio: 1.556604e-01	ci left: 2.681874e-04	ci right 3.138912e-04	k: 633	n:2180000
Cons ci ratio: 1.069286e-02	ci left: 5.775871e-02	ci right 5.838008e-02	k: 126590	n:2180000
KS ci ratio: 1.308580e-01	ci left: 3.845393e-04	ci right 4.388206e-04	k: 896	n:2180000
FAM13A   2180000 perm   2419 sec   (901 perm/sec)   p_kst 4.110092e-04   p_cons 5.806881e-02   p_joint 2.903670e-04

Joint ci ratio: 1.551716e-01	ci left: 2.687183e-04	ci right 3.143554e-04	k: 637	n:2190000
Cons ci ratio: 1.066930e-02	ci left: 5.775045e-02	ci right 5.837035e-02	k: 127151	n:2190000
KS ci ratio: 1.304225e-01	ci left: 3.854336e-04	ci right 4.396460e-04	k: 902	n:2190000
FAM13A   2190000 perm   2438 sec   (898 perm/sec)   p_kst 4.118721e-04   p_cons 5.805982e-02   p_joint 2.908676e-04

Joint ci ratio: 1.550502e-01	ci left: 2.679337e-04	ci right 3.133986e-04	k: 638	n:2200000
Cons ci ratio: 1.064479e-02	ci left: 5.775360e-02	ci right 5.837211e-02	k: 127737	n:2200000
KS ci ratio: 1.302784e-01	ci left: 3.845611e-04	ci right 4.385864e-04	k: 904	n:2200000
FAM13A   2200000 perm   2458 sec   (895 perm/sec)   p_kst 4.109091e-04   p_cons 5.806227e-02   p_joint 2.900000e-04

Joint ci ratio: 1.548082e-01	ci left: 2.675912e-04	ci right 3.129206e-04	k: 640	n:2210000
Cons ci ratio: 1.062264e-02	ci left: 5.773416e-02	ci right 5.835116e-02	k: 128273	n:2210000
KS ci ratio: 1.301347e-01	ci left: 3.836964e-04	ci right 4.375363e-04	k: 906	n:2210000
FAM13A   2210000 perm   2477 sec   (892 perm/sec)   p_kst 4.099548e-04   p_cons 5.804208e-02   p_joint 2.895928e-04

Joint ci ratio: 1.544472e-01	ci left: 2.676849e-04	ci right 3.129146e-04	k: 643	n:2220000
Cons ci ratio: 1.059958e-02	ci left: 5.772568e-02	ci right 5.834124e-02	k: 128833	n:2220000
KS ci ratio: 1.298487e-01	ci left: 3.837113e-04	ci right 4.374258e-04	k: 910	n:2220000
FAM13A   2220000 perm   2497 sec   (889 perm/sec)   p_kst 4.099099e-04   p_cons 5.803288e-02   p_joint 2.896396e-04

Joint ci ratio: 1.539697e-01	ci left: 2.682091e-04	ci right 3.133743e-04	k: 647	n:2230000
Cons ci ratio: 1.057506e-02	ci left: 5.773382e-02	ci right 5.834804e-02	k: 129430	n:2230000
KS ci ratio: 1.295646e-01	ci left: 3.837261e-04	ci right 4.373161e-04	k: 914	n:2230000
FAM13A   2230000 perm   2517 sec   (886 perm/sec)   p_kst 4.098655e-04   p_cons 5.804036e-02   p_joint 2.901345e-04

Joint ci ratio: 1.530278e-01	ci left: 2.704460e-04	ci right 3.156838e-04	k: 655	n:2240000
Cons ci ratio: 1.055162e-02	ci left: 5.773255e-02	ci right 5.834538e-02	k: 130006	n:2240000
KS ci ratio: 1.290018e-01	ci left: 3.854690e-04	ci right 4.390506e-04	k: 922	n:2240000
FAM13A   2240000 perm   2538 sec   (883 perm/sec)   p_kst 4.116071e-04   p_cons 5.803839e-02   p_joint 2.924107e-04

Joint ci ratio: 1.527951e-01	ci left: 2.700989e-04	ci right 3.152036e-04	k: 657	n:2250000
Cons ci ratio: 1.052872e-02	ci left: 5.772729e-02	ci right 5.833874e-02	k: 130573	n:2250000
KS ci ratio: 1.287231e-01	ci left: 3.854763e-04	ci right 4.389344e-04	k: 926	n:2250000
FAM13A   2250000 perm   2558 sec   (879 perm/sec)   p_kst 4.115556e-04   p_cons 5.803244e-02   p_joint 2.920000e-04

Joint ci ratio: 1.526792e-01	ci left: 2.693293e-04	ci right 3.142683e-04	k: 658	n:2260000
Cons ci ratio: 1.050507e-02	ci left: 5.773135e-02	ci right 5.834146e-02	k: 131161	n:2260000
KS ci ratio: 1.285154e-01	ci left: 3.850554e-04	ci right 4.383623e-04	k: 929	n:2260000
FAM13A   2260000 perm   2579 sec   (876 perm/sec)   p_kst 4.110619e-04   p_cons 5.803584e-02   p_joint 2.911504e-04

Joint ci ratio: 1.525636e-01	ci left: 2.685665e-04	ci right 3.133412e-04	k: 659	n:2270000
Cons ci ratio: 1.048188e-02	ci left: 5.773231e-02	ci right 5.834107e-02	k: 131742	n:2270000
KS ci ratio: 1.284464e-01	ci left: 3.837854e-04	ci right 4.368859e-04	k: 930	n:2270000
FAM13A   2270000 perm   2599 sec   (873 perm/sec)   p_kst 4.096916e-04   p_cons 5.803612e-02   p_joint 2.903084e-04

Joint ci ratio: 1.523330e-01	ci left: 2.682323e-04	ci right 3.128775e-04	k: 661	n:2280000
Cons ci ratio: 1.045901e-02	ci left: 5.773150e-02	ci right 5.833892e-02	k: 132319	n:2280000
KS ci ratio: 1.282400e-01	ci left: 3.833757e-04	ci right 4.363277e-04	k: 933	n:2280000
FAM13A   2280000 perm   2620 sec   (870 perm/sec)   p_kst 4.092105e-04   p_cons 5.803465e-02   p_joint 2.899123e-04

Joint ci ratio: 1.522181e-01	ci left: 2.674810e-04	ci right 3.119646e-04	k: 662	n:2290000
Cons ci ratio: 1.043729e-02	ci left: 5.772025e-02	ci right 5.832628e-02	k: 132872	n:2290000
KS ci ratio: 1.281030e-01	ci left: 3.825469e-04	ci right 4.353237e-04	k: 935	n:2290000
FAM13A   2290000 perm   2640 sec   (867 perm/sec)   p_kst 4.082969e-04   p_cons 5.802271e-02   p_joint 2.890830e-04

Joint ci ratio: 1.517610e-01	ci left: 2.679911e-04	ci right 3.124134e-04	k: 666	n:2300000
Cons ci ratio: 1.041562e-02	ci left: 5.770997e-02	ci right 5.831462e-02	k: 133427	n:2300000
KS ci ratio: 1.278301e-01	ci left: 3.825671e-04	ci right 4.352258e-04	k: 939	n:2300000
FAM13A   2300000 perm   2661 sec   (864 perm/sec)   p_kst 4.082609e-04   p_cons 5.801174e-02   p_joint 2.895652e-04

Joint ci ratio: 1.516474e-01	ci left: 2.672474e-04	ci right 3.115103e-04	k: 667	n:2310000
Cons ci ratio: 1.039166e-02	ci left: 5.772525e-02	ci right 5.832867e-02	k: 134041	n:2310000
KS ci ratio: 1.276944e-01	ci left: 3.817491e-04	ci right 4.342352e-04	k: 941	n:2310000
FAM13A   2310000 perm   2681 sec   (862 perm/sec)   p_kst 4.073593e-04   p_cons 5.802641e-02   p_joint 2.887446e-04

Joint ci ratio: 1.509708e-01	ci left: 2.685838e-04	ci right 3.128516e-04	k: 673	n:2320000
Cons ci ratio: 1.036941e-02	ci left: 5.772407e-02	ci right 5.832617e-02	k: 134617	n:2320000
KS ci ratio: 1.272225e-01	ci left: 3.830247e-04	ci right 4.354768e-04	k: 948	n:2320000
FAM13A   2320000 perm   2702 sec   (859 perm/sec)   p_kst 4.086207e-04   p_cons 5.802457e-02   p_joint 2.900862e-04

Joint ci ratio: 1.507473e-01	ci left: 2.682570e-04	ci right 3.123997e-04	k: 675	n:2330000
Cons ci ratio: 1.034711e-02	ci left: 5.772504e-02	ci right 5.832585e-02	k: 135198	n:2330000
KS ci ratio: 1.270219e-01	ci left: 3.826274e-04	ci right 4.349363e-04	k: 951	n:2330000
FAM13A   2330000 perm   2730 sec   (854 perm/sec)   p_kst 4.081545e-04   p_cons 5.802489e-02   p_joint 2.896996e-04

Joint ci ratio: 1.501928e-01	ci left: 2.691669e-04	ci right 3.132818e-04	k: 680	n:2340000
Cons ci ratio: 1.032466e-02	ci left: 5.772898e-02	ci right 5.832852e-02	k: 135786	n:2340000
KS ci ratio: 1.265574e-01	ci left: 3.838889e-04	ci right 4.361639e-04	k: 958	n:2340000
FAM13A   2340000 perm   2751 sec   (851 perm/sec)   p_kst 4.094017e-04   p_cons 5.802821e-02   p_joint 2.905983e-04

Joint ci ratio: 1.500827e-01	ci left: 2.684311e-04	ci right 3.123902e-04	k: 681	n:2350000
Cons ci ratio: 1.030288e-02	ci left: 5.772738e-02	ci right 5.832563e-02	k: 136361	n:2350000
KS ci ratio: 1.263600e-01	ci left: 3.834915e-04	ci right 4.356248e-04	k: 961	n:2350000
FAM13A   2350000 perm   2772 sec   (848 perm/sec)   p_kst 4.089362e-04   p_cons 5.802596e-02   p_joint 2.897872e-04

Joint ci ratio: 1.499729e-01	ci left: 2.677015e-04	ci right 3.115061e-04	k: 682	n:2360000
Cons ci ratio: 1.028008e-02	ci left: 5.773804e-02	ci right 5.833507e-02	k: 136965	n:2360000
KS ci ratio: 1.262289e-01	ci left: 3.826872e-04	ci right 4.346532e-04	k: 963	n:2360000
FAM13A   2360000 perm   2793 sec   (845 perm/sec)   p_kst 4.080508e-04   p_cons 5.803602e-02   p_joint 2.889831e-04

Joint ci ratio: 1.492101e-01	ci left: 2.694150e-04	ci right 3.132558e-04	k: 689	n:2370000
Cons ci ratio: 1.025866e-02	ci left: 5.773557e-02	ci right 5.833133e-02	k: 137538	n:2370000
KS ci ratio: 1.257082e-01	ci left: 3.843417e-04	ci right 4.363010e-04	k: 971	n:2370000
FAM13A   2370000 perm   2814 sec   (842 perm/sec)   p_kst 4.097046e-04   p_cons 5.803291e-02   p_joint 2.907173e-04

Joint ci ratio: 1.492102e-01	ci left: 2.682830e-04	ci right 3.119396e-04	k: 689	n:2380000
Cons ci ratio: 1.023663e-02	ci left: 5.774109e-02	ci right 5.833561e-02	k: 138130	n:2380000
KS ci ratio: 1.253861e-01	ci left: 3.847617e-04	ci right 4.366346e-04	k: 976	n:2380000
FAM13A   2380000 perm   2835 sec   (840 perm/sec)   p_kst 4.100840e-04   p_cons 5.803782e-02   p_joint 2.894958e-04

Joint ci ratio: 1.487795e-01	ci left: 2.687717e-04	ci right 3.123704e-04	k: 693	n:2390000
Cons ci ratio: 1.021443e-02	ci left: 5.774990e-02	ci right 5.834322e-02	k: 138730	n:2390000
KS ci ratio: 1.250028e-01	ci left: 3.855836e-04	ci right 4.373967e-04	k: 982	n:2390000
FAM13A   2390000 perm   2856 sec   (837 perm/sec)   p_kst 4.108787e-04   p_cons 5.804603e-02   p_joint 2.899582e-04

Joint ci ratio: 1.486725e-01	ci left: 2.680530e-04	ci right 3.115010e-04	k: 694	n:2400000
Cons ci ratio: 1.019380e-02	ci left: 5.774326e-02	ci right 5.833531e-02	k: 139293	n:2400000
KS ci ratio: 1.248759e-01	ci left: 3.847843e-04	ci right 4.364336e-04	k: 984	n:2400000
FAM13A   2400000 perm   2877 sec   (834 perm/sec)   p_kst 4.100000e-04   p_cons 5.803875e-02   p_joint 2.891667e-04

Joint ci ratio: 1.483527e-01	ci left: 2.681393e-04	ci right 3.114995e-04	k: 697	n:2410000
Cons ci ratio: 1.017226e-02	ci left: 5.774785e-02	ci right 5.833869e-02	k: 139883	n:2410000
KS ci ratio: 1.246862e-01	ci left: 3.843937e-04	ci right 4.359063e-04	k: 987	n:2410000
FAM13A   2410000 perm   2899 sec   (831 perm/sec)   p_kst 4.095436e-04   p_cons 5.804274e-02   p_joint 2.892116e-04

Joint ci ratio: 1.483528e-01	ci left: 2.670313e-04	ci right 3.102123e-04	k: 697	n:2420000
Cons ci ratio: 1.015208e-02	ci left: 5.773922e-02	ci right 5.832878e-02	k: 140441	n:2420000
KS ci ratio: 1.246863e-01	ci left: 3.828052e-04	ci right 4.341051e-04	k: 987	n:2420000
FAM13A   2420000 perm   2920 sec   (829 perm/sec)   p_kst 4.078512e-04   p_cons 5.803347e-02   p_joint 2.880165e-04

Joint ci ratio: 1.481407e-01	ci left: 2.667249e-04	ci right 3.097893e-04	k: 699	n:2430000
Cons ci ratio: 1.013237e-02	ci left: 5.772696e-02	ci right 5.831525e-02	k: 140990	n:2430000
KS ci ratio: 1.245604e-01	ci left: 3.820273e-04	ci right 4.331674e-04	k: 989	n:2430000
FAM13A   2430000 perm   2941 sec   (826 perm/sec)   p_kst 4.069959e-04   p_cons 5.802058e-02   p_joint 2.876543e-04

Joint ci ratio: 1.475098e-01	ci left: 2.679998e-04	ci right 3.110696e-04	k: 705	n:2440000
Cons ci ratio: 1.011125e-02	ci left: 5.773116e-02	ci right 5.831825e-02	k: 141579	n:2440000
KS ci ratio: 1.241223e-01	ci left: 3.832412e-04	ci right 4.343501e-04	k: 996	n:2440000
FAM13A   2440000 perm   2964 sec   (823 perm/sec)   p_kst 4.081967e-04   p_cons 5.802418e-02   p_joint 2.889344e-04

Joint ci ratio: 1.471974e-01	ci left: 2.680853e-04	ci right 3.110695e-04	k: 708	n:2450000
Cons ci ratio: 1.009087e-02	ci left: 5.772880e-02	ci right 5.831469e-02	k: 142152	n:2450000
KS ci ratio: 1.238122e-01	ci left: 3.836545e-04	ci right 4.346813e-04	k: 1001	n:2450000
FAM13A   2450000 perm   2986 sec   (821 perm/sec)   p_kst 4.085714e-04   p_cons 5.802122e-02   p_joint 2.889796e-04

Joint ci ratio: 1.470937e-01	ci left: 2.673871e-04	ci right 3.102264e-04	k: 709	n:2460000
Cons ci ratio: 1.007225e-02	ci left: 5.770863e-02	ci right 5.829322e-02	k: 142681	n:2460000
KS ci ratio: 1.237505e-01	ci left: 3.824888e-04	ci right 4.333334e-04	k: 1002	n:2460000
FAM13A   2460000 perm   3008 sec   (818 perm/sec)   p_kst 4.073171e-04   p_cons 5.800041e-02   p_joint 2.882114e-04

Joint ci ratio: 1.467839e-01	ci left: 2.674744e-04	ci right 3.102297e-04	k: 712	n:2470000
Cons ci ratio: 1.005054e-02	ci left: 5.772336e-02	ci right 5.830683e-02	k: 143296	n:2470000
KS ci ratio: 1.233820e-01	ci left: 3.832944e-04	ci right 4.340832e-04	k: 1008	n:2470000
FAM13A   2470000 perm   3030 sec   (815 perm/sec)   p_kst 4.080972e-04   p_cons 5.801457e-02   p_joint 2.882591e-04

Joint ci ratio: 1.465785e-01	ci left: 2.671728e-04	ci right 3.098148e-04	k: 714	n:2480000
Cons ci ratio: 1.002904e-02	ci left: 5.773716e-02	ci right 5.831952e-02	k: 143909	n:2480000
KS ci ratio: 1.232599e-01	ci left: 3.825304e-04	ci right 4.331642e-04	k: 1010	n:2480000
FAM13A   2480000 perm   3051 sec   (813 perm/sec)   p_kst 4.072581e-04   p_cons 5.802782e-02   p_joint 2.879032e-04

Joint ci ratio: 1.463740e-01	ci left: 2.668736e-04	ci right 3.094032e-04	k: 716	n:2490000
Cons ci ratio: 1.000919e-02	ci left: 5.773443e-02	ci right 5.831560e-02	k: 144481	n:2490000
KS ci ratio: 1.228957e-01	ci left: 3.833296e-04	ci right 4.339084e-04	k: 1016	n:2490000
FAM13A   2490000 perm   3073 sec   (810 perm/sec)   p_kst 4.080321e-04   p_cons 5.802450e-02   p_joint 2.875502e-04

Joint ci ratio: 1.459673e-01	ci left: 2.673476e-04	ci right 3.098240e-04	k: 720	n:2500000
Cons ci ratio: 9.988500e-03	ci left: 5.774209e-02	ci right 5.832213e-02	k: 145079	n:2500000
KS ci ratio: 1.226548e-01	ci left: 3.833471e-04	ci right 4.338218e-04	k: 1020	n:2500000
FAM13A   2500000 perm   3095 sec   (808 perm/sec)   p_kst 4.080000e-04   p_cons 5.803160e-02   p_joint 2.880000e-04

Joint ci ratio: 1.457653e-01	ci left: 2.670502e-04	ci right 3.094155e-04	k: 722	n:2510000
Cons ci ratio: 9.968667e-03	ci left: 5.774175e-02	ci right 5.832063e-02	k: 145657	n:2510000
KS ci ratio: 1.224152e-01	ci left: 3.833646e-04	ci right 4.337359e-04	k: 1024	n:2510000
FAM13A   2510000 perm   3117 sec   (805 perm/sec)   p_kst 4.079681e-04   p_cons 5.803068e-02   p_joint 2.876494e-04

Joint ci ratio: 1.456647e-01	ci left: 2.663728e-04	ci right 3.085990e-04	k: 723	n:2520000
Cons ci ratio: 9.949458e-03	ci left: 5.773587e-02	ci right 5.831356e-02	k: 146221	n:2520000
KS ci ratio: 1.223556e-01	ci left: 3.822280e-04	ci right 4.324237e-04	k: 1025	n:2520000
FAM13A   2520000 perm   3139 sec   (803 perm/sec)   p_kst 4.067460e-04   p_cons 5.802421e-02   p_joint 2.869048e-04

Joint ci ratio: 1.453638e-01	ci left: 2.664625e-04	ci right 3.086081e-04	k: 726	n:2530000
Cons ci ratio: 9.930790e-03	ci left: 5.772530e-02	ci right 5.830180e-02	k: 146773	n:2530000
KS ci ratio: 1.221771e-01	ci left: 3.818667e-04	ci right 4.319366e-04	k: 1028	n:2530000
FAM13A   2530000 perm   3162 sec   (800 perm/sec)   p_kst 4.063241e-04   p_cons 5.801304e-02   p_joint 2.869565e-04

Joint ci ratio: 1.448665e-01	ci left: 2.673105e-04	ci right 3.094331e-04	k: 731	n:2540000
Cons ci ratio: 9.911726e-03	ci left: 5.772031e-02	ci right 5.829565e-02	k: 147339	n:2540000
KS ci ratio: 1.218814e-01	ci left: 3.822717e-04	ci right 4.322646e-04	k: 1033	n:2540000
FAM13A   2540000 perm   3185 sec   (798 perm/sec)   p_kst 4.066929e-04   p_cons 5.800748e-02   p_joint 2.877953e-04

Joint ci ratio: 1.443742e-01	ci left: 2.681521e-04	ci right 3.102513e-04	k: 736	n:2550000
Cons ci ratio: 9.891707e-03	ci left: 5.772711e-02	ci right 5.830135e-02	k: 147935	n:2550000
KS ci ratio: 1.214708e-01	ci left: 3.834342e-04	ci right 4.333980e-04	k: 1040	n:2550000
FAM13A   2550000 perm   3207 sec   (795 perm/sec)   p_kst 4.078431e-04   p_cons 5.801373e-02   p_joint 2.886275e-04

Joint ci ratio: 1.438868e-01	ci left: 2.689873e-04	ci right 3.110629e-04	k: 741	n:2560000
Cons ci ratio: 9.872268e-03	ci left: 5.772878e-02	ci right 5.830190e-02	k: 148518	n:2560000
KS ci ratio: 1.211801e-01	ci left: 3.838303e-04	ci right 4.337174e-04	k: 1045	n:2560000
FAM13A   2560000 perm   3230 sec   (793 perm/sec)   p_kst 4.082031e-04   p_cons 5.801484e-02   p_joint 2.894531e-04

Joint ci ratio: 1.437900e-01	ci left: 2.683158e-04	ci right 3.102556e-04	k: 742	n:2570000
Cons ci ratio: 9.853328e-03	ci left: 5.772618e-02	ci right 5.829817e-02	k: 149090	n:2570000
KS ci ratio: 1.211223e-01	ci left: 3.827141e-04	ci right 4.324307e-04	k: 1046	n:2570000
FAM13A   2570000 perm   3253 sec   (790 perm/sec)   p_kst 4.070039e-04   p_cons 5.801167e-02   p_joint 2.887160e-04

Joint ci ratio: 1.433086e-01	ci left: 2.691442e-04	ci right 3.110606e-04	k: 747	n:2580000
Cons ci ratio: 9.834393e-03	ci left: 5.772475e-02	ci right 5.829562e-02	k: 149665	n:2580000
KS ci ratio: 1.207194e-01	ci left: 3.838618e-04	ci right 4.335498e-04	k: 1053	n:2580000
FAM13A   2580000 perm   3276 sec   (788 perm/sec)   p_kst 4.081395e-04   p_cons 5.800969e-02   p_joint 2.895349e-04

Joint ci ratio: 1.431174e-01	ci left: 2.688495e-04	ci right 3.106594e-04	k: 749	n:2590000
Cons ci ratio: 9.815358e-03	ci left: 5.772565e-02	ci right 5.829542e-02	k: 150246	n:2590000
KS ci ratio: 1.206050e-01	ci left: 3.831286e-04	ci right 4.326714e-04	k: 1055	n:2590000
FAM13A   2590000 perm   3299 sec   (785 perm/sec)   p_kst 4.073359e-04   p_cons 5.801004e-02   p_joint 2.891892e-04

Joint ci ratio: 1.429270e-01	ci left: 2.685572e-04	ci right 3.102613e-04	k: 751	n:2600000
Cons ci ratio: 9.796605e-03	ci left: 5.772462e-02	ci right 5.829329e-02	k: 150822	n:2600000
KS ci ratio: 1.204910e-01	ci left: 3.824011e-04	ci right 4.317997e-04	k: 1057	n:2600000
FAM13A   2600000 perm   3321 sec   (783 perm/sec)   p_kst 4.065385e-04   p_cons 5.800846e-02   p_joint 2.888462e-04

Joint ci ratio: 1.424541e-01	ci left: 2.693756e-04	ci right 3.110566e-04	k: 756	n:2610000
Cons ci ratio: 9.777686e-03	ci left: 5.772666e-02	ci right 5.829424e-02	k: 151406	n:2610000
KS ci ratio: 1.200380e-01	ci left: 3.839089e-04	ci right 4.333026e-04	k: 1065	n:2610000
FAM13A   2610000 perm   3344 sec   (780 perm/sec)   p_kst 4.080460e-04   p_cons 5.800996e-02   p_joint 2.896552e-04

Joint ci ratio: 1.421727e-01	ci left: 2.694517e-04	ci right 3.110552e-04	k: 759	n:2620000
Cons ci ratio: 9.760273e-03	ci left: 5.771308e-02	ci right 5.827950e-02	k: 151949	n:2620000
KS ci ratio: 1.198695e-01	ci left: 3.835542e-04	ci right 4.328281e-04	k: 1068	n:2620000
FAM13A   2620000 perm   3367 sec   (778 perm/sec)   p_kst 4.076336e-04   p_cons 5.799580e-02   p_joint 2.896947e-04

Joint ci ratio: 1.416147e-01	ci left: 2.706275e-04	ci right 3.122348e-04	k: 765	n:2630000
Cons ci ratio: 9.742139e-03	ci left: 5.770870e-02	ci right 5.827403e-02	k: 152516	n:2630000
KS ci ratio: 1.195344e-01	ci left: 3.843089e-04	ci right 4.335320e-04	k: 1074	n:2630000
FAM13A   2630000 perm   3390 sec   (776 perm/sec)   p_kst 4.083650e-04   p_cons 5.799087e-02   p_joint 2.908745e-04

Joint ci ratio: 1.416148e-01	ci left: 2.696024e-04	ci right 3.110521e-04	k: 765	n:2640000
Cons ci ratio: 9.725050e-03	ci left: 5.769377e-02	ci right 5.825796e-02	k: 153055	n:2640000
KS ci ratio: 1.194234e-01	ci left: 3.835881e-04	ci right 4.326701e-04	k: 1076	n:2640000
FAM13A   2640000 perm   3414 sec   (773 perm/sec)   p_kst 4.075758e-04   p_cons 5.797538e-02   p_joint 2.897727e-04

Joint ci ratio: 1.415225e-01	ci left: 2.689490e-04	ci right 3.102690e-04	k: 766	n:2650000
Cons ci ratio: 9.706005e-03	ci left: 5.770193e-02	ci right 5.826508e-02	k: 153655	n:2650000
KS ci ratio: 1.193681e-01	ci left: 3.825067e-04	ci right 4.314260e-04	k: 1077	n:2650000
FAM13A   2650000 perm   3438 sec   (771 perm/sec)   p_kst 4.064151e-04   p_cons 5.798302e-02   p_joint 2.890566e-04

Joint ci ratio: 1.411549e-01	ci left: 2.693885e-04	ci right 3.106595e-04	k: 770	n:2660000
Cons ci ratio: 9.689305e-03	ci left: 5.768489e-02	ci right 5.824690e-02	k: 154188	n:2660000
KS ci ratio: 1.190922e-01	ci left: 3.828924e-04	ci right 4.317398e-04	k: 1082	n:2660000
FAM13A   2660000 perm   3461 sec   (769 perm/sec)   p_kst 4.067669e-04   p_cons 5.796541e-02   p_joint 2.894737e-04

Joint ci ratio: 1.408810e-01	ci left: 2.694636e-04	ci right 3.106592e-04	k: 773	n:2670000
Cons ci ratio: 9.669574e-03	ci left: 5.770311e-02	ci right 5.826415e-02	k: 154815	n:2670000
KS ci ratio: 1.189276e-01	ci left: 3.825485e-04	ci right 4.312798e-04	k: 1085	n:2670000
FAM13A   2670000 perm   3484 sec   (766 perm/sec)   p_kst 4.063670e-04   p_cons 5.798315e-02   p_joint 2.895131e-04

Joint ci ratio: 1.406088e-01	ci left: 2.695381e-04	ci right 3.106588e-04	k: 776	n:2680000
Cons ci ratio: 9.651017e-03	ci left: 5.770928e-02	ci right 5.826929e-02	k: 155410	n:2680000
KS ci ratio: 1.187637e-01	ci left: 3.822072e-04	ci right 4.308233e-04	k: 1088	n:2680000
FAM13A   2680000 perm   3507 sec   (764 perm/sec)   p_kst 4.059701e-04   p_cons 5.798881e-02   p_joint 2.895522e-04

Joint ci ratio: 1.404282e-01	ci left: 2.692534e-04	ci right 3.102735e-04	k: 778	n:2690000
Cons ci ratio: 9.632992e-03	ci left: 5.771058e-02	ci right 5.826956e-02	k: 155992	n:2690000
KS ci ratio: 1.185462e-01	ci left: 3.822292e-04	ci right 4.307528e-04	k: 1092	n:2690000
FAM13A   2690000 perm   3531 sec   (762 perm/sec)   p_kst 4.059480e-04   p_cons 5.798959e-02   p_joint 2.892193e-04

Joint ci ratio: 1.400690e-01	ci left: 2.696857e-04	ci right 3.106578e-04	k: 782	n:2700000
Cons ci ratio: 9.614221e-03	ci left: 5.772148e-02	ci right 5.827947e-02	k: 156600	n:2700000
KS ci ratio: 1.182221e-01	ci left: 3.829699e-04	ci right 4.314454e-04	k: 1098	n:2700000
FAM13A   2700000 perm   3555 sec   (760 perm/sec)   p_kst 4.066667e-04   p_cons 5.800000e-02   p_joint 2.896296e-04

Joint ci ratio: 1.397126e-01	ci left: 2.701149e-04	ci right 3.110391e-04	k: 786	n:2710000
Cons ci ratio: 9.595721e-03	ci left: 5.773046e-02	ci right 5.828746e-02	k: 157203	n:2710000
KS ci ratio: 1.178473e-01	ci left: 3.840635e-04	ci right 4.325126e-04	k: 1105	n:2710000
FAM13A   2710000 perm   3579 sec   (757 perm/sec)   p_kst 4.077491e-04   p_cons 5.800849e-02   p_joint 2.900369e-04

Joint ci ratio: 1.391830e-01	ci left: 2.712508e-04	ci right 3.121784e-04	k: 792	n:2720000
Cons ci ratio: 9.578520e-03	ci left: 5.772581e-02	ci right 5.828175e-02	k: 157769	n:2720000
KS ci ratio: 1.175289e-01	ci left: 3.847925e-04	ci right 4.331932e-04	k: 1111	n:2720000
FAM13A   2720000 perm   3602 sec   (755 perm/sec)   p_kst 4.084559e-04   p_cons 5.800331e-02   p_joint 2.911765e-04

Joint ci ratio: 1.389204e-01	ci left: 2.713179e-04	ci right 3.121720e-04	k: 795	n:2730000
Cons ci ratio: 9.560609e-03	ci left: 5.773032e-02	ci right 5.828527e-02	k: 158360	n:2730000
KS ci ratio: 1.173181e-01	ci left: 3.848052e-04	ci right 4.331147e-04	k: 1115	n:2730000
FAM13A   2730000 perm   3626 sec   (753 perm/sec)   p_kst 4.084249e-04   p_cons 5.800733e-02   p_joint 2.912088e-04

Joint ci ratio: 1.384861e-01	ci left: 2.720891e-04	ci right 3.129207e-04	k: 800	n:2740000
Cons ci ratio: 9.543309e-03	ci left: 5.772898e-02	ci right 5.828290e-02	k: 158935	n:2740000
KS ci ratio: 1.170040e-01	ci left: 3.855264e-04	ci right 4.337879e-04	k: 1121	n:2740000
FAM13A   2740000 perm   3650 sec   (751 perm/sec)   p_kst 4.091241e-04   p_cons 5.800547e-02   p_joint 2.919708e-04

Joint ci ratio: 1.383136e-01	ci left: 2.718018e-04	ci right 3.125353e-04	k: 802	n:2750000
Cons ci ratio: 9.525373e-03	ci left: 5.773599e-02	ci right 5.828894e-02	k: 159533	n:2750000
KS ci ratio: 1.168999e-01	ci left: 3.848305e-04	ci right 4.329590e-04	k: 1123	n:2750000
FAM13A   2750000 perm   3674 sec   (749 perm/sec)   p_kst 4.083636e-04   p_cons 5.801200e-02   p_joint 2.916364e-04

Joint ci ratio: 1.381417e-01	ci left: 2.715166e-04	ci right 3.121526e-04	k: 804	n:2760000
Cons ci ratio: 9.508515e-03	ci left: 5.773175e-02	ci right 5.828367e-02	k: 160100	n:2760000
KS ci ratio: 1.167442e-01	ci left: 3.844913e-04	ci right 4.325090e-04	k: 1126	n:2760000
FAM13A   2760000 perm   3699 sec   (746 perm/sec)   p_kst 4.079710e-04   p_cons 5.800725e-02   p_joint 2.913043e-04

Joint ci ratio: 1.379704e-01	ci left: 2.712335e-04	ci right 3.117726e-04	k: 806	n:2770000
Cons ci ratio: 9.490303e-03	ci left: 5.774411e-02	ci right 5.829508e-02	k: 160713	n:2770000
KS ci ratio: 1.166408e-01	ci left: 3.838042e-04	ci right 4.316907e-04	k: 1128	n:2770000
FAM13A   2770000 perm   3723 sec   (744 perm/sec)   p_kst 4.072202e-04   p_cons 5.801913e-02   p_joint 2.909747e-04

Joint ci ratio: 1.378851e-01	ci left: 2.706051e-04	ci right 3.110233e-04	k: 807	n:2780000
Cons ci ratio: 9.473880e-03	ci left: 5.773700e-02	ci right 5.828694e-02	k: 161272	n:2780000
KS ci ratio: 1.165377e-01	ci left: 3.831221e-04	ci right 4.308783e-04	k: 1130	n:2780000
FAM13A   2780000 perm   3747 sec   (742 perm/sec)   p_kst 4.064748e-04   p_cons 5.801151e-02   p_joint 2.902878e-04

Joint ci ratio: 1.377999e-01	ci left: 2.699813e-04	ci right 3.102793e-04	k: 808	n:2790000
Cons ci ratio: 9.454782e-03	ci left: 5.776177e-02	ci right 5.831083e-02	k: 161920	n:2790000
KS ci ratio: 1.162809e-01	ci left: 3.834888e-04	ci right 4.311782e-04	k: 1135	n:2790000
FAM13A   2790000 perm   3771 sec   (740 perm/sec)   p_kst 4.068100e-04   p_cons 5.803584e-02   p_joint 2.896057e-04

Joint ci ratio: 1.376299e-01	ci left: 2.697067e-04	ci right 3.099100e-04	k: 810	n:2800000
Cons ci ratio: 9.439282e-03	ci left: 5.774609e-02	ci right 5.829411e-02	k: 162455	n:2800000
KS ci ratio: 1.161787e-01	ci left: 3.828127e-04	ci right 4.303733e-04	k: 1137	n:2800000
FAM13A   2800000 perm   3796 sec   (738 perm/sec)   p_kst 4.060714e-04   p_cons 5.801964e-02   p_joint 2.892857e-04

Joint ci ratio: 1.372917e-01	ci left: 2.701214e-04	ci right 3.102795e-04	k: 814	n:2810000
Cons ci ratio: 9.423367e-03	ci left: 5.773621e-02	ci right 5.828320e-02	k: 163006	n:2810000
KS ci ratio: 1.159751e-01	ci left: 3.828325e-04	ci right 4.303065e-04	k: 1141	n:2810000
FAM13A   2810000 perm   3820 sec   (736 perm/sec)   p_kst 4.060498e-04   p_cons 5.800925e-02   p_joint 2.896797e-04

Joint ci ratio: 1.369560e-01	ci left: 2.705334e-04	ci right 3.106463e-04	k: 818	n:2820000
Cons ci ratio: 9.406250e-03	ci left: 5.774126e-02	ci right 5.828730e-02	k: 163599	n:2820000
KS ci ratio: 1.157220e-01	ci left: 3.831967e-04	ci right 4.306050e-04	k: 1146	n:2820000
FAM13A   2820000 perm   3845 sec   (733 perm/sec)   p_kst 4.063830e-04   p_cons 5.801383e-02   p_joint 2.900709e-04

Joint ci ratio: 1.367058e-01	ci left: 2.706012e-04	ci right 3.106450e-04	k: 821	n:2830000
Cons ci ratio: 9.389621e-03	ci left: 5.774170e-02	ci right 5.828677e-02	k: 164179	n:2830000
KS ci ratio: 1.155710e-01	ci left: 3.828720e-04	ci right 4.301742e-04	k: 1149	n:2830000
FAM13A   2830000 perm   3869 sec   (731 perm/sec)   p_kst 4.060071e-04   p_cons 5.801378e-02   p_joint 2.901060e-04

Joint ci ratio: 1.367059e-01	ci left: 2.696484e-04	ci right 3.095512e-04	k: 821	n:2840000
Cons ci ratio: 9.373382e-03	ci left: 5.773861e-02	ci right 5.828271e-02	k: 164749	n:2840000
KS ci ratio: 1.155208e-01	ci left: 3.818658e-04	ci right 4.290218e-04	k: 1150	n:2840000
FAM13A   2840000 perm   3893 sec   (729 perm/sec)   p_kst 4.049296e-04   p_cons 5.801021e-02   p_joint 2.890845e-04

Joint ci ratio: 1.363745e-01	ci left: 2.700578e-04	ci right 3.099164e-04	k: 825	n:2850000
Cons ci ratio: 9.356776e-03	ci left: 5.774081e-02	ci right 5.828395e-02	k: 165334	n:2850000
KS ci ratio: 1.152209e-01	ci left: 3.825704e-04	ci right 4.296824e-04	k: 1156	n:2850000
FAM13A   2850000 perm   3918 sec   (727 perm/sec)   p_kst 4.056140e-04   p_cons 5.801193e-02   p_joint 2.894737e-04

Joint ci ratio: 1.360454e-01	ci left: 2.704645e-04	ci right 3.102790e-04	k: 829	n:2860000
Cons ci ratio: 9.339511e-03	ci left: 5.775170e-02	ci right 5.829395e-02	k: 165944	n:2860000
KS ci ratio: 1.149727e-01	ci left: 3.829307e-04	ci right 4.299786e-04	k: 1161	n:2860000
FAM13A   2860000 perm   3943 sec   (725 perm/sec)   p_kst 4.059441e-04   p_cons 5.802238e-02   p_joint 2.898601e-04

Joint ci ratio: 1.359636e-01	ci left: 2.698587e-04	ci right 3.095582e-04	k: 830	n:2870000
Cons ci ratio: 9.323857e-03	ci left: 5.774480e-02	ci right 5.828606e-02	k: 166503	n:2870000
KS ci ratio: 1.149233e-01	ci left: 3.819349e-04	ci right 4.288389e-04	k: 1162	n:2870000
FAM13A   2870000 perm   3967 sec   (723 perm/sec)   p_kst 4.048780e-04   p_cons 5.801498e-02   p_joint 2.891986e-04

Joint ci ratio: 1.357188e-01	ci left: 2.699279e-04	ci right 3.095604e-04	k: 833	n:2880000
Cons ci ratio: 9.308399e-03	ci left: 5.773655e-02	ci right 5.827684e-02	k: 167058	n:2880000
KS ci ratio: 1.146770e-01	ci left: 3.822950e-04	ci right 4.291358e-04	k: 1167	n:2880000
FAM13A   2880000 perm   3992 sec   (721 perm/sec)   p_kst 4.052083e-04   p_cons 5.800625e-02   p_joint 2.892361e-04

Joint ci ratio: 1.354754e-01	ci left: 2.699968e-04	ci right 3.095625e-04	k: 836	n:2890000
Cons ci ratio: 9.291988e-03	ci left: 5.774045e-02	ci right 5.827981e-02	k: 167648	n:2890000
KS ci ratio: 1.145301e-01	ci left: 3.819804e-04	ci right 4.287187e-04	k: 1170	n:2890000
FAM13A   2890000 perm   4018 sec   (719 perm/sec)   p_kst 4.048443e-04   p_cons 5.800969e-02   p_joint 2.892734e-04

Joint ci ratio: 1.353138e-01	ci left: 2.697320e-04	ci right 3.092081e-04	k: 838	n:2900000
Cons ci ratio: 9.274991e-03	ci left: 5.775224e-02	ci right 5.829072e-02	k: 168261	n:2900000
KS ci ratio: 1.142863e-01	ci left: 3.823381e-04	ci right 4.290138e-04	k: 1175	n:2900000
FAM13A   2900000 perm   4044 sec   (717 perm/sec)   p_kst 4.051724e-04   p_cons 5.802103e-02   p_joint 2.889655e-04

Joint ci ratio: 1.351529e-01	ci left: 2.694692e-04	ci right 3.088560e-04	k: 840	n:2910000
Cons ci ratio: 9.260183e-03	ci left: 5.773925e-02	ci right 5.827675e-02	k: 168802	n:2910000
KS ci ratio: 1.141408e-01	ci left: 3.820257e-04	ci right 4.285999e-04	k: 1178	n:2910000
FAM13A   2910000 perm   4069 sec   (715 perm/sec)   p_kst 4.048110e-04   p_cons 5.800756e-02   p_joint 2.886598e-04

Joint ci ratio: 1.348326e-01	ci left: 2.698699e-04	ci right 3.092144e-04	k: 844	n:2920000
Cons ci ratio: 9.244083e-03	ci left: 5.774242e-02	ci right 5.827901e-02	k: 169390	n:2920000
KS ci ratio: 1.138996e-01	ci left: 3.823809e-04	ci right 4.288932e-04	k: 1183	n:2920000
FAM13A   2920000 perm   4095 sec   (713 perm/sec)   p_kst 4.051370e-04   p_cons 5.801027e-02   p_joint 2.890411e-04

Joint ci ratio: 1.344354e-01	ci left: 2.705979e-04	ci right 3.099230e-04	k: 849	n:2930000
Cons ci ratio: 9.228125e-03	ci left: 5.774488e-02	ci right 5.828056e-02	k: 169976	n:2930000
KS ci ratio: 1.136598e-01	ci left: 3.827337e-04	ci right 4.291844e-04	k: 1188	n:2930000
FAM13A   2930000 perm   4121 sec   (711 perm/sec)   p_kst 4.054608e-04   p_cons 5.801229e-02   p_joint 2.897611e-04

Joint ci ratio: 1.341987e-01	ci left: 2.706636e-04	ci right 3.099235e-04	k: 852	n:2940000
Cons ci ratio: 9.211790e-03	ci left: 5.775276e-02	ci right 5.828756e-02	k: 170578	n:2940000
KS ci ratio: 1.134691e-01	ci left: 3.827538e-04	ci right 4.291238e-04	k: 1192	n:2940000
FAM13A   2940000 perm   4147 sec   (709 perm/sec)   p_kst 4.054422e-04   p_cons 5.801973e-02   p_joint 2.897959e-04

Joint ci ratio: 1.339634e-01	ci left: 2.707289e-04	ci right 3.099239e-04	k: 855	n:2950000
Cons ci ratio: 9.196312e-03	ci left: 5.775146e-02	ci right 5.828534e-02	k: 171153	n:2950000
KS ci ratio: 1.132321e-01	ci left: 3.831032e-04	ci right 4.294121e-04	k: 1197	n:2950000
FAM13A   2950000 perm   4173 sec   (707 perm/sec)   p_kst 4.057627e-04   p_cons 5.801797e-02   p_joint 2.898305e-04

Joint ci ratio: 1.339634e-01	ci left: 2.698143e-04	ci right 3.088769e-04	k: 855	n:2960000
Cons ci ratio: 9.182104e-03	ci left: 5.773600e-02	ci right 5.826891e-02	k: 171686	n:2960000
KS ci ratio: 1.131377e-01	ci left: 3.824655e-04	ci right 4.286562e-04	k: 1199	n:2960000
FAM13A   2960000 perm   4200 sec   (705 perm/sec)   p_kst 4.050676e-04   p_cons 5.800203e-02   p_joint 2.888514e-04

Joint ci ratio: 1.336515e-01	ci left: 2.702076e-04	ci right 3.092288e-04	k: 859	n:2970000
Cons ci ratio: 9.165843e-03	ci left: 5.774585e-02	ci right 5.827791e-02	k: 172294	n:2970000
KS ci ratio: 1.129496e-01	ci left: 3.824864e-04	ci right 4.285978e-04	k: 1203	n:2970000
FAM13A   2970000 perm   4226 sec   (703 perm/sec)   p_kst 4.050505e-04   p_cons 5.801145e-02   p_joint 2.892256e-04

Joint ci ratio: 1.334964e-01	ci left: 2.699495e-04	ci right 3.088846e-04	k: 861	n:2980000
Cons ci ratio: 9.150819e-03	ci left: 5.774191e-02	ci right 5.827305e-02	k: 172861	n:2980000
KS ci ratio: 1.128559e-01	ci left: 3.818551e-04	ci right 4.278496e-04	k: 1205	n:2980000
FAM13A   2980000 perm   4253 sec   (701 perm/sec)   p_kst 4.043624e-04   p_cons 5.800705e-02   p_joint 2.889262e-04

Joint ci ratio: 1.332647e-01	ci left: 2.700166e-04	ci right 3.088884e-04	k: 864	n:2990000
Cons ci ratio: 9.135283e-03	ci left: 5.774500e-02	ci right 5.827526e-02	k: 173449	n:2990000
KS ci ratio: 1.126693e-01	ci left: 3.818781e-04	ci right 4.277942e-04	k: 1209	n:2990000
FAM13A   2990000 perm   4279 sec   (699 perm/sec)   p_kst 4.043478e-04   p_cons 5.800970e-02   p_joint 2.889632e-04

Joint ci ratio: 1.329576e-01	ci left: 2.704054e-04	ci right 3.092365e-04	k: 868	n:3000000
Cons ci ratio: 9.120047e-03	ci left: 5.774541e-02	ci right 5.827478e-02	k: 174029	n:3000000
KS ci ratio: 1.124372e-01	ci left: 3.822249e-04	ci right 4.280818e-04	k: 1214	n:3000000
FAM13A   3000000 perm   4305 sec   (697 perm/sec)   p_kst 4.046667e-04   p_cons 5.800967e-02   p_joint 2.893333e-04

Joint ci ratio: 1.326526e-01	ci left: 2.707918e-04	ci right 3.095821e-04	k: 872	n:3010000
Cons ci ratio: 9.105082e-03	ci left: 5.774349e-02	ci right 5.827198e-02	k: 174602	n:3010000
KS ci ratio: 1.122525e-01	ci left: 3.822466e-04	ci right 4.280258e-04	k: 1218	n:3010000
FAM13A   3010000 perm   4331 sec   (695 perm/sec)   p_kst 4.046512e-04   p_cons 5.800731e-02   p_joint 2.897010e-04

Joint ci ratio: 1.325010e-01	ci left: 2.705355e-04	ci right 3.092412e-04	k: 874	n:3020000
Cons ci ratio: 9.089391e-03	ci left: 5.775117e-02	ci right 5.827881e-02	k: 175204	n:3020000
KS ci ratio: 1.120688e-01	ci left: 3.822682e-04	ci right 4.279701e-04	k: 1222	n:3020000
FAM13A   3020000 perm   4358 sec   (693 perm/sec)   p_kst 4.046358e-04   p_cons 5.801457e-02   p_joint 2.894040e-04

Joint ci ratio: 1.322744e-01	ci left: 2.705999e-04	ci right 3.092435e-04	k: 877	n:3030000
Cons ci ratio: 9.073644e-03	ci left: 5.776045e-02	ci right 5.828726e-02	k: 175811	n:3030000
KS ci ratio: 1.118404e-01	ci left: 3.826106e-04	ci right 4.282540e-04	k: 1227	n:3030000
FAM13A   3030000 perm   4385 sec   (691 perm/sec)   p_kst 4.049505e-04   p_cons 5.802343e-02   p_joint 2.894389e-04

Joint ci ratio: 1.318993e-01	ci left: 2.713002e-04	ci right 3.099253e-04	k: 882	n:3040000
Cons ci ratio: 9.059832e-03	ci left: 5.774735e-02	ci right 5.827323e-02	k: 176350	n:3040000
KS ci ratio: 1.115230e-01	ci left: 3.835903e-04	ci right 4.292122e-04	k: 1234	n:3040000
FAM13A   3040000 perm   4412 sec   (689 perm/sec)   p_kst 4.059211e-04   p_cons 5.800987e-02   p_joint 2.901316e-04

Joint ci ratio: 1.316758e-01	ci left: 2.713618e-04	ci right 3.099252e-04	k: 885	n:3050000
Cons ci ratio: 9.044482e-03	ci left: 5.775364e-02	ci right 5.827868e-02	k: 176948	n:3050000
KS ci ratio: 1.113878e-01	ci left: 3.832888e-04	ci right 4.288160e-04	k: 1237	n:3050000
FAM13A   3050000 perm   4438 sec   (687 perm/sec)   p_kst 4.055738e-04   p_cons 5.801574e-02   p_joint 2.901639e-04

Joint ci ratio: 1.314535e-01	ci left: 2.714232e-04	ci right 3.099250e-04	k: 888	n:3060000
Cons ci ratio: 9.030101e-03	ci left: 5.774912e-02	ci right 5.827328e-02	k: 177513	n:3060000
KS ci ratio: 1.111635e-01	ci left: 3.836248e-04	ci right 4.290941e-04	k: 1242	n:3060000
FAM13A   3060000 perm   4465 sec   (685 perm/sec)   p_kst 4.058824e-04   p_cons 5.801078e-02   p_joint 2.901961e-04

Joint ci ratio: 1.313796e-01	ci left: 2.708541e-04	ci right 3.092519e-04	k: 889	n:3070000
Cons ci ratio: 9.014955e-03	ci left: 5.775471e-02	ci right 5.827804e-02	k: 178109	n:3070000
KS ci ratio: 1.110742e-01	ci left: 3.830085e-04	ci right 4.283659e-04	k: 1244	n:3070000
FAM13A   3070000 perm   4492 sec   (683 perm/sec)   p_kst 4.052117e-04   p_cons 5.801596e-02   p_joint 2.895765e-04

Joint ci ratio: 1.312323e-01	ci left: 2.706027e-04	ci right 3.089185e-04	k: 891	n:3080000
Cons ci ratio: 9.000232e-03	ci left: 5.775606e-02	ci right 5.827854e-02	k: 178692	n:3080000
KS ci ratio: 1.109406e-01	ci left: 3.827120e-04	ci right 4.279762e-04	k: 1247	n:3080000
FAM13A   3080000 perm   4519 sec   (682 perm/sec)   p_kst 4.048701e-04   p_cons 5.801688e-02   p_joint 2.892857e-04

Joint ci ratio: 1.310854e-01	ci left: 2.703530e-04	ci right 3.085872e-04	k: 893	n:3090000
Cons ci ratio: 8.984864e-03	ci left: 5.776611e-02	ci right 5.828779e-02	k: 179302	n:3090000
KS ci ratio: 1.108076e-01	ci left: 3.824174e-04	ci right 4.275890e-04	k: 1250	n:3090000
FAM13A   3090000 perm   4546 sec   (680 perm/sec)   p_kst 4.045307e-04   p_cons 5.802654e-02   p_joint 2.889968e-04

Joint ci ratio: 1.309391e-01	ci left: 2.701049e-04	ci right 3.082581e-04	k: 895	n:3100000
Cons ci ratio: 8.969626e-03	ci left: 5.777546e-02	ci right 5.829633e-02	k: 179910	n:3100000
KS ci ratio: 1.107191e-01	ci left: 3.818110e-04	ci right 4.268727e-04	k: 1252	n:3100000
FAM13A   3100000 perm   4573 sec   (678 perm/sec)   p_kst 4.038710e-04   p_cons 5.803548e-02   p_joint 2.887097e-04

Joint ci ratio: 1.306477e-01	ci left: 2.704805e-04	ci right 3.085951e-04	k: 899	n:3110000
Cons ci ratio: 8.954914e-03	ci left: 5.777929e-02	ci right 5.829934e-02	k: 180501	n:3110000
KS ci ratio: 1.105428e-01	ci left: 3.818339e-04	ci right 4.268218e-04	k: 1256	n:3110000
FAM13A   3110000 perm   4600 sec   (676 perm/sec)   p_kst 4.038585e-04   p_cons 5.803891e-02   p_joint 2.890675e-04

Joint ci ratio: 1.303584e-01	ci left: 2.708537e-04	ci right 3.089299e-04	k: 903	n:3120000
Cons ci ratio: 8.941322e-03	ci left: 5.777031e-02	ci right 5.828948e-02	k: 181052	n:3120000
KS ci ratio: 1.103674e-01	ci left: 3.818567e-04	ci right 4.267713e-04	k: 1260	n:3120000
FAM13A   3120000 perm   4627 sec   (674 perm/sec)   p_kst 4.038462e-04   p_cons 5.802949e-02   p_joint 2.894231e-04

Joint ci ratio: 1.301426e-01	ci left: 2.709156e-04	ci right 3.089326e-04	k: 906	n:3130000
Cons ci ratio: 8.926435e-03	ci left: 5.777796e-02	ci right 5.829634e-02	k: 181655	n:3130000
KS ci ratio: 1.102363e-01	ci left: 3.815688e-04	ci right 4.263927e-04	k: 1263	n:3130000
FAM13A   3130000 perm   4655 sec   (672 perm/sec)   p_kst 4.035144e-04   p_cons 5.803674e-02   p_joint 2.894569e-04

Joint ci ratio: 1.299279e-01	ci left: 2.709772e-04	ci right 3.089352e-04	k: 909	n:3140000
Cons ci ratio: 8.911596e-03	ci left: 5.778589e-02	ci right 5.830346e-02	k: 182259	n:3140000
KS ci ratio: 1.100623e-01	ci left: 3.815924e-04	ci right 4.263437e-04	k: 1267	n:3140000
FAM13A   3140000 perm   4682 sec   (671 perm/sec)   p_kst 4.035032e-04   p_cons 5.804427e-02   p_joint 2.894904e-04

Joint ci ratio: 1.297854e-01	ci left: 2.707312e-04	ci right 3.086100e-04	k: 911	n:3150000
Cons ci ratio: 8.898200e-03	ci left: 5.777697e-02	ci right 5.829369e-02	k: 182810	n:3150000
KS ci ratio: 1.099757e-01	ci left: 3.809984e-04	ci right 4.256427e-04	k: 1269	n:3150000
FAM13A   3150000 perm   4709 sec   (669 perm/sec)   p_kst 4.028571e-04   p_cons 5.803492e-02   p_joint 2.892063e-04

Joint ci ratio: 1.295017e-01	ci left: 2.710993e-04	ci right 3.089403e-04	k: 915	n:3160000
Cons ci ratio: 8.884427e-03	ci left: 5.777348e-02	ci right 5.828936e-02	k: 183378	n:3160000
KS ci ratio: 1.097598e-01	ci left: 3.813315e-04	ci right 4.259214e-04	k: 1274	n:3160000
FAM13A   3160000 perm   4737 sec   (667 perm/sec)   p_kst 4.031646e-04   p_cons 5.803101e-02   p_joint 2.895570e-04

Joint ci ratio: 1.294311e-01	ci left: 2.705493e-04	ci right 3.082914e-04	k: 916	n:3170000
Cons ci ratio: 8.870334e-03	ci left: 5.777473e-02	ci right 5.828980e-02	k: 183961	n:3170000
KS ci ratio: 1.097168e-01	ci left: 3.804354e-04	ci right 4.249019e-04	k: 1275	n:3170000
FAM13A   3170000 perm   4764 sec   (665 perm/sec)   p_kst 4.022082e-04   p_cons 5.803186e-02   p_joint 2.889590e-04

Joint ci ratio: 1.290096e-01	ci left: 2.715243e-04	ci right 3.092696e-04	k: 922	n:3180000
Cons ci ratio: 8.856996e-03	ci left: 5.776750e-02	ci right 5.828173e-02	k: 184517	n:3180000
KS ci ratio: 1.094171e-01	ci left: 3.813800e-04	ci right 4.258273e-04	k: 1282	n:3180000
FAM13A   3180000 perm   4792 sec   (664 perm/sec)   p_kst 4.031447e-04   p_cons 5.802421e-02   p_joint 2.899371e-04

Joint ci ratio: 1.288005e-01	ci left: 2.715833e-04	ci right 3.092709e-04	k: 925	n:3190000
Cons ci ratio: 8.842525e-03	ci left: 5.777502e-02	ci right 5.828847e-02	k: 185120	n:3190000
KS ci ratio: 1.091621e-01	ci left: 3.820139e-04	ci right 4.264247e-04	k: 1288	n:3190000
FAM13A   3190000 perm   4820 sec   (662 perm/sec)   p_kst 4.037618e-04   p_cons 5.803135e-02   p_joint 2.899687e-04

Joint ci ratio: 1.285923e-01	ci left: 2.716419e-04	ci right 3.092721e-04	k: 928	n:3200000
Cons ci ratio: 8.828151e-03	ci left: 5.778219e-02	ci right 5.829486e-02	k: 185722	n:3200000
KS ci ratio: 1.089510e-01	ci left: 3.823400e-04	ci right 4.266972e-04	k: 1293	n:3200000
FAM13A   3200000 perm   4848 sec   (660 perm/sec)   p_kst 4.040625e-04   p_cons 5.803813e-02   p_joint 2.900000e-04

Joint ci ratio: 1.281790e-01	ci left: 2.726048e-04	ci right 3.102378e-04	k: 934	n:3210000
Cons ci ratio: 8.813018e-03	ci left: 5.779957e-02	ci right 5.831151e-02	k: 186357	n:3210000
KS ci ratio: 1.086574e-01	ci left: 3.832703e-04	ci right 4.276079e-04	k: 1300	n:3210000
FAM13A   3210000 perm   4876 sec   (658 perm/sec)   p_kst 4.049844e-04   p_cons 5.805514e-02   p_joint 2.909657e-04

Joint ci ratio: 1.280422e-01	ci left: 2.723594e-04	ci right 3.099153e-04	k: 936	n:3220000
Cons ci ratio: 8.799961e-03	ci left: 5.779204e-02	ci right 5.830316e-02	k: 186912	n:3220000
KS ci ratio: 1.084492e-01	ci left: 3.835906e-04	ci right 4.278749e-04	k: 1305	n:3220000
FAM13A   3220000 perm   4904 sec   (657 perm/sec)   p_kst 4.052795e-04   p_cons 5.804720e-02   p_joint 2.906832e-04

Joint ci ratio: 1.279057e-01	ci left: 2.721155e-04	ci right 3.095948e-04	k: 938	n:3230000
Cons ci ratio: 8.786340e-03	ci left: 5.779229e-02	ci right 5.830262e-02	k: 187492	n:3230000
KS ci ratio: 1.083663e-01	ci left: 3.830054e-04	ci right 4.271862e-04	k: 1307	n:3230000
FAM13A   3230000 perm   4932 sec   (655 perm/sec)   p_kst 4.046440e-04   p_cons 5.804706e-02   p_joint 2.904025e-04

Joint ci ratio: 1.277698e-01	ci left: 2.718732e-04	ci right 3.092763e-04	k: 940	n:3240000
Cons ci ratio: 8.773129e-03	ci left: 5.778823e-02	ci right 5.829775e-02	k: 188058	n:3240000
KS ci ratio: 1.082836e-01	ci left: 3.824239e-04	ci right 4.265017e-04	k: 1309	n:3240000
FAM13A   3240000 perm   4966 sec   (652 perm/sec)   p_kst 4.040123e-04   p_cons 5.804259e-02   p_joint 2.901235e-04

Joint ci ratio: 1.275666e-01	ci left: 2.719303e-04	ci right 3.092772e-04	k: 943	n:3250000
Cons ci ratio: 8.758769e-03	ci left: 5.779924e-02	ci right 5.830801e-02	k: 188673	n:3250000
KS ci ratio: 1.081598e-01	ci left: 3.821453e-04	ci right 4.261375e-04	k: 1312	n:3250000
FAM13A   3250000 perm   4995 sec   (651 perm/sec)   p_kst 4.036923e-04   p_cons 5.805323e-02   p_joint 2.901538e-04

Joint ci ratio: 1.272300e-01	ci left: 2.725810e-04	ci right 3.099111e-04	k: 948	n:3260000
Cons ci ratio: 8.745510e-03	ci left: 5.779732e-02	ci right 5.830530e-02	k: 189246	n:3260000
KS ci ratio: 1.079135e-01	ci left: 3.827638e-04	ci right 4.267205e-04	k: 1318	n:3260000
FAM13A   3260000 perm   5024 sec   (649 perm/sec)   p_kst 4.042945e-04   p_cons 5.805092e-02   p_joint 2.907975e-04

Joint ci ratio: 1.270294e-01	ci left: 2.726357e-04	ci right 3.099100e-04	k: 951	n:3270000
Cons ci ratio: 8.731774e-03	ci left: 5.780213e-02	ci right 5.830936e-02	k: 189841	n:3270000
KS ci ratio: 1.077502e-01	ci left: 3.827835e-04	ci right 4.266718e-04	k: 1322	n:3270000
FAM13A   3270000 perm   5052 sec   (647 perm/sec)   p_kst 4.042813e-04   p_cons 5.805535e-02   p_joint 2.908257e-04

Joint ci ratio: 1.265649e-01	ci left: 2.738709e-04	ci right 3.111669e-04	k: 958	n:3280000
Cons ci ratio: 8.718248e-03	ci left: 5.780509e-02	ci right 5.831155e-02	k: 190430	n:3280000
KS ci ratio: 1.074259e-01	ci left: 3.839899e-04	ci right 4.278755e-04	k: 1330	n:3280000
FAM13A   3280000 perm   5080 sec   (646 perm/sec)   p_kst 4.054878e-04   p_cons 5.805793e-02   p_joint 2.920732e-04

Joint ci ratio: 1.263017e-01	ci left: 2.742159e-04	ci right 3.114753e-04	k: 962	n:3290000
Cons ci ratio: 8.704833e-03	ci left: 5.780742e-02	ci right 5.831312e-02	k: 191017	n:3290000
KS ci ratio: 1.072246e-01	ci left: 3.843017e-04	ci right 4.281355e-04	k: 1335	n:3290000
FAM13A   3290000 perm   5108 sec   (644 perm/sec)   p_kst 4.057751e-04   p_cons 5.805988e-02   p_joint 2.924012e-04

Joint ci ratio: 1.262362e-01	ci left: 2.736784e-04	ci right 3.108441e-04	k: 963	n:3300000
Cons ci ratio: 8.692130e-03	ci left: 5.780157e-02	ci right 5.830648e-02	k: 191577	n:3300000
KS ci ratio: 1.071846e-01	ci left: 3.834321e-04	ci right 4.271493e-04	k: 1336	n:3300000
FAM13A   3300000 perm   5136 sec   (642 perm/sec)   p_kst 4.048485e-04   p_cons 5.805364e-02   p_joint 2.918182e-04

Joint ci ratio: 1.259101e-01	ci left: 2.743145e-04	ci right 3.114631e-04	k: 968	n:3310000
Cons ci ratio: 8.677852e-03	ci left: 5.781626e-02	ci right 5.832046e-02	k: 192205	n:3310000
KS ci ratio: 1.069050e-01	ci left: 3.843319e-04	ci right 4.280302e-04	k: 1343	n:3310000
FAM13A   3310000 perm   5165 sec   (641 perm/sec)   p_kst 4.057402e-04   p_cons 5.806798e-02   p_joint 2.924471e-04

Joint ci ratio: 1.259101e-01	ci left: 2.734882e-04	ci right 3.105250e-04	k: 968	n:3320000
Cons ci ratio: 8.663835e-03	ci left: 5.782846e-02	ci right 5.833195e-02	k: 192825	n:3320000
KS ci ratio: 1.068653e-01	ci left: 3.834674e-04	ci right 4.270503e-04	k: 1344	n:3320000
FAM13A   3320000 perm   5193 sec   (639 perm/sec)   p_kst 4.048193e-04   p_cons 5.807982e-02   p_joint 2.915663e-04

Joint ci ratio: 1.258453e-01	ci left: 2.729578e-04	ci right 3.099023e-04	k: 969	n:3330000
Cons ci ratio: 8.650955e-03	ci left: 5.782710e-02	ci right 5.832982e-02	k: 193400	n:3330000
KS ci ratio: 1.067860e-01	ci left: 3.829004e-04	ci right 4.263845e-04	k: 1346	n:3330000
FAM13A   3330000 perm   5223 sec   (638 perm/sec)   p_kst 4.042042e-04   p_cons 5.807808e-02   p_joint 2.909910e-04

Joint ci ratio: 1.255866e-01	ci left: 2.733005e-04	ci right 3.102097e-04	k: 973	n:3340000
Cons ci ratio: 8.638438e-03	ci left: 5.782186e-02	ci right 5.832381e-02	k: 193962	n:3340000
KS ci ratio: 1.065489e-01	ci left: 3.835025e-04	ci right 4.269522e-04	k: 1352	n:3340000
FAM13A   3340000 perm   5251 sec   (636 perm/sec)   p_kst 4.047904e-04   p_cons 5.807246e-02   p_joint 2.913174e-04

Joint ci ratio: 1.253936e-01	ci left: 2.733521e-04	ci right 3.102073e-04	k: 976	n:3350000
Cons ci ratio: 8.624964e-03	ci left: 5.782947e-02	ci right 5.833070e-02	k: 194567	n:3350000
KS ci ratio: 1.063918e-01	ci left: 3.835199e-04	ci right 4.269035e-04	k: 1356	n:3350000
FAM13A   3350000 perm   5281 sec   (634 perm/sec)   p_kst 4.047761e-04   p_cons 5.807970e-02   p_joint 2.913433e-04

Joint ci ratio: 1.253295e-01	ci left: 2.728268e-04	ci right 3.095910e-04	k: 977	n:3360000
Cons ci ratio: 8.612631e-03	ci left: 5.782337e-02	ci right 5.832382e-02	k: 195126	n:3360000
KS ci ratio: 1.062353e-01	ci left: 3.835373e-04	ci right 4.268551e-04	k: 1360	n:3360000
FAM13A   3360000 perm   5309 sec   (633 perm/sec)   p_kst 4.047619e-04   p_cons 5.807321e-02   p_joint 2.907738e-04

Joint ci ratio: 1.250103e-01	ci left: 2.734545e-04	ci right 3.102024e-04	k: 982	n:3370000
Cons ci ratio: 8.600280e-03	ci left: 5.781819e-02	ci right 5.831788e-02	k: 195688	n:3370000
KS ci ratio: 1.060019e-01	ci left: 3.841324e-04	ci right 4.274161e-04	k: 1366	n:3370000
FAM13A   3370000 perm   5338 sec   (631 perm/sec)   p_kst 4.053412e-04   p_cons 5.806766e-02   p_joint 2.913947e-04

Joint ci ratio: 1.248834e-01	ci left: 2.732186e-04	ci right 3.098949e-04	k: 984	n:3380000
Cons ci ratio: 8.587703e-03	ci left: 5.781659e-02	ci right 5.831553e-02	k: 196262	n:3380000
KS ci ratio: 1.059245e-01	ci left: 3.835719e-04	ci right 4.267589e-04	k: 1368	n:3380000
FAM13A   3380000 perm   5368 sec   (630 perm/sec)   p_kst 4.047337e-04   p_cons 5.806568e-02   p_joint 2.911243e-04

Joint ci ratio: 1.245676e-01	ci left: 2.738416e-04	ci right 3.105016e-04	k: 989	n:3390000
Cons ci ratio: 8.574257e-03	ci left: 5.782677e-02	ci right 5.832501e-02	k: 196876	n:3390000
KS ci ratio: 1.057316e-01	ci left: 3.838763e-04	ci right 4.270140e-04	k: 1373	n:3390000
FAM13A   3390000 perm   5397 sec   (628 perm/sec)   p_kst 4.050147e-04   p_cons 5.807552e-02   p_joint 2.917404e-04

Joint ci ratio: 1.244419e-01	ci left: 2.736061e-04	ci right 3.101950e-04	k: 991	n:3400000
Cons ci ratio: 8.561909e-03	ci left: 5.782369e-02	ci right 5.832118e-02	k: 197445	n:3400000
KS ci ratio: 1.056547e-01	ci left: 3.833200e-04	ci right 4.263619e-04	k: 1375	n:3400000
FAM13A   3400000 perm   5426 sec   (627 perm/sec)   p_kst 4.044118e-04   p_cons 5.807206e-02   p_joint 2.914706e-04

Joint ci ratio: 1.242542e-01	ci left: 2.736561e-04	ci right 3.101924e-04	k: 994	n:3410000
Cons ci ratio: 8.549637e-03	ci left: 5.782033e-02	ci right 5.831708e-02	k: 198013	n:3410000
KS ci ratio: 1.055397e-01	ci left: 3.830524e-04	ci right 4.260145e-04	k: 1378	n:3410000
FAM13A   3410000 perm   5456 sec   (625 perm/sec)   p_kst 4.041056e-04   p_cons 5.806833e-02   p_joint 2.914956e-04

Joint ci ratio: 1.240052e-01	ci left: 2.739893e-04	ci right 3.104913e-04	k: 998	n:3420000
Cons ci ratio: 8.536072e-03	ci left: 5.783421e-02	ci right 5.833028e-02	k: 198640	n:3420000
KS ci ratio: 1.053870e-01	ci left: 3.830711e-04	ci right 4.259693e-04	k: 1382	n:3420000
FAM13A   3420000 perm   5485 sec   (623 perm/sec)   p_kst 4.040936e-04   p_cons 5.808187e-02   p_joint 2.918129e-04

Joint ci ratio: 1.240052e-01	ci left: 2.731904e-04	ci right 3.095861e-04	k: 998	n:3430000
Cons ci ratio: 8.523888e-03	ci left: 5.783113e-02	ci right 5.832647e-02	k: 199209	n:3430000
KS ci ratio: 1.053871e-01	ci left: 3.819543e-04	ci right 4.247274e-04	k: 1382	n:3430000
FAM13A   3430000 perm   5515 sec   (622 perm/sec)   p_kst 4.029155e-04   p_cons 5.807843e-02   p_joint 2.909621e-04

Joint ci ratio: 1.238195e-01	ci left: 2.732413e-04	ci right 3.095852e-04	k: 1001	n:3440000
Cons ci ratio: 8.511146e-03	ci left: 5.783590e-02	ci right 5.833054e-02	k: 199805	n:3440000
KS ci ratio: 1.052350e-01	ci left: 3.819761e-04	ci right 4.246862e-04	k: 1386	n:3440000
FAM13A   3440000 perm   5545 sec   (620 perm/sec)   p_kst 4.029070e-04   p_cons 5.808285e-02   p_joint 2.909884e-04

Joint ci ratio: 1.235730e-01	ci left: 2.735729e-04	ci right 3.098832e-04	k: 1005	n:3450000
Cons ci ratio: 8.498168e-03	ci left: 5.784441e-02	ci right 5.833836e-02	k: 200414	n:3450000
KS ci ratio: 1.050836e-01	ci left: 3.819978e-04	ci right 4.246451e-04	k: 1390	n:3450000
FAM13A   3450000 perm   5574 sec   (619 perm/sec)   p_kst 4.028986e-04   p_cons 5.809101e-02   p_joint 2.913043e-04

Joint ci ratio: 1.233892e-01	ci left: 2.736225e-04	ci right 3.098814e-04	k: 1008	n:3460000
Cons ci ratio: 8.485607e-03	ci left: 5.784825e-02	ci right 5.834150e-02	k: 201007	n:3460000
KS ci ratio: 1.049705e-01	ci left: 3.817381e-04	ci right 4.243076e-04	k: 1393	n:3460000
FAM13A   3460000 perm   5603 sec   (618 perm/sec)   p_kst 4.026012e-04   p_cons 5.809451e-02   p_joint 2.913295e-04

Joint ci ratio: 1.230239e-01	ci left: 2.745098e-04	ci right 3.107707e-04	k: 1014	n:3470000
Cons ci ratio: 8.473750e-03	ci left: 5.784374e-02	ci right 5.833625e-02	k: 201571	n:3470000
KS ci ratio: 1.047453e-01	ci left: 3.823217e-04	ci right 4.248593e-04	k: 1399	n:3470000
FAM13A   3470000 perm   5633 sec   (616 perm/sec)   p_kst 4.031700e-04   p_cons 5.808963e-02   p_joint 2.922190e-04

Joint ci ratio: 1.229029e-01	ci left: 2.742780e-04	ci right 3.104701e-04	k: 1016	n:3480000
Cons ci ratio: 8.462164e-03	ci left: 5.783638e-02	ci right 5.832815e-02	k: 202125	n:3480000
KS ci ratio: 1.046332e-01	ci left: 3.820626e-04	ci right 4.245230e-04	k: 1402	n:3480000
FAM13A   3480000 perm   5664 sec   (614 perm/sec)   p_kst 4.028736e-04   p_cons 5.808190e-02   p_joint 2.919540e-04

Joint ci ratio: 1.226619e-01	ci left: 2.746030e-04	ci right 3.107618e-04	k: 1020	n:3490000
Cons ci ratio: 8.450094e-03	ci left: 5.783592e-02	ci right 5.832699e-02	k: 202703	n:3490000
KS ci ratio: 1.043731e-01	ci left: 3.829212e-04	ci right 4.253648e-04	k: 1409	n:3490000
FAM13A   3490000 perm   5694 sec   (613 perm/sec)   p_kst 4.037249e-04   p_cons 5.808109e-02   p_joint 2.922636e-04

Joint ci ratio: 1.225419e-01	ci left: 2.743723e-04	ci right 3.104628e-04	k: 1022	n:3500000
Cons ci ratio: 8.438208e-03	ci left: 5.783376e-02	ci right 5.832412e-02	k: 203275	n:3500000
KS ci ratio: 1.042992e-01	ci left: 3.823836e-04	ci right 4.247358e-04	k: 1411	n:3500000
FAM13A   3500000 perm   5724 sec   (611 perm/sec)   p_kst 4.031429e-04   p_cons 5.807857e-02   p_joint 2.920000e-04

Joint ci ratio: 1.225420e-01	ci left: 2.735907e-04	ci right 3.095783e-04	k: 1022	n:3510000
Cons ci ratio: 8.426592e-03	ci left: 5.782877e-02	ci right 5.831840e-02	k: 203837	n:3510000
KS ci ratio: 1.042993e-01	ci left: 3.812942e-04	ci right 4.235257e-04	k: 1411	n:3510000
FAM13A   3510000 perm   5755 sec   (610 perm/sec)   p_kst 4.019943e-04   p_cons 5.807322e-02   p_joint 2.911681e-04

Joint ci ratio: 1.223627e-01	ci left: 2.736396e-04	ci right 3.095772e-04	k: 1025	n:3520000
Cons ci ratio: 8.414367e-03	ci left: 5.783231e-02	ci right 5.832126e-02	k: 204429	n:3520000
KS ci ratio: 1.041519e-01	ci left: 3.813177e-04	ci right 4.234885e-04	k: 1415	n:3520000
FAM13A   3520000 perm   5785 sec   (608 perm/sec)   p_kst 4.019886e-04   p_cons 5.807642e-02   p_joint 2.911932e-04

Joint ci ratio: 1.221248e-01	ci left: 2.739629e-04	ci right 3.098680e-04	k: 1029	n:3530000
Cons ci ratio: 8.402979e-03	ci left: 5.782565e-02	ci right 5.831388e-02	k: 204985	n:3530000
KS ci ratio: 1.039684e-01	ci left: 3.816171e-04	ci right 4.237421e-04	k: 1420	n:3530000
FAM13A   3530000 perm   5815 sec   (607 perm/sec)   p_kst 4.022663e-04   p_cons 5.806941e-02   p_joint 2.915014e-04

Joint ci ratio: 1.220656e-01	ci left: 2.734628e-04	ci right 3.092838e-04	k: 1030	n:3540000
Cons ci ratio: 8.391226e-03	ci left: 5.782439e-02	ci right 5.831193e-02	k: 205560	n:3540000
KS ci ratio: 1.039319e-01	ci left: 3.808142e-04	ci right 4.228349e-04	k: 1421	n:3540000
FAM13A   3540000 perm   5845 sec   (606 perm/sec)   p_kst 4.014124e-04   p_cons 5.806780e-02   p_joint 2.909605e-04

Joint ci ratio: 1.220065e-01	ci left: 2.729656e-04	ci right 3.087028e-04	k: 1031	n:3550000
Cons ci ratio: 8.379759e-03	ci left: 5.782004e-02	ci right 5.830687e-02	k: 206124	n:3550000
KS ci ratio: 1.038225e-01	ci left: 3.805646e-04	ci right 4.225109e-04	k: 1424	n:3550000
FAM13A   3550000 perm   5876 sec   (604 perm/sec)   p_kst 4.011268e-04   p_cons 5.806310e-02   p_joint 2.904225e-04

Joint ci ratio: 1.218296e-01	ci left: 2.730158e-04	ci right 3.087041e-04	k: 1034	n:3560000
Cons ci ratio: 8.367780e-03	ci left: 5.782301e-02	ci right 5.830917e-02	k: 206714	n:3560000
KS ci ratio: 1.036408e-01	ci left: 3.808637e-04	ci right 4.227649e-04	k: 1429	n:3560000
FAM13A   3560000 perm   5906 sec   (603 perm/sec)   p_kst 4.014045e-04   p_cons 5.806573e-02   p_joint 2.904494e-04

Joint ci ratio: 1.217708e-01	ci left: 2.725227e-04	ci right 3.081280e-04	k: 1035	n:3570000
Cons ci ratio: 8.356237e-03	ci left: 5.782093e-02	ci right 5.830640e-02	k: 207286	n:3570000
KS ci ratio: 1.035684e-01	ci left: 3.803425e-04	ci right 4.221555e-04	k: 1431	n:3570000
FAM13A   3570000 perm   5936 sec   (601 perm/sec)   p_kst 4.008403e-04   p_cons 5.806331e-02   p_joint 2.899160e-04

Joint ci ratio: 1.215949e-01	ci left: 2.725739e-04	ci right 3.081308e-04	k: 1038	n:3580000
Cons ci ratio: 8.345190e-03	ci left: 5.781301e-02	ci right 5.829776e-02	k: 207837	n:3580000
KS ci ratio: 1.034601e-01	ci left: 3.800964e-04	ci right 4.218359e-04	k: 1434	n:3580000
FAM13A   3580000 perm   5966 sec   (600 perm/sec)   p_kst 4.005587e-04   p_cons 5.805503e-02   p_joint 2.899441e-04

Joint ci ratio: 1.214780e-01	ci left: 2.723548e-04	ci right 3.078465e-04	k: 1040	n:3590000
Cons ci ratio: 8.334590e-03	ci left: 5.779985e-02	ci right 5.828387e-02	k: 208369	n:3590000
KS ci ratio: 1.032445e-01	ci left: 3.806657e-04	ci right 4.223754e-04	k: 1440	n:3590000
FAM13A   3590000 perm   5997 sec   (599 perm/sec)   p_kst 4.011142e-04   p_cons 5.804150e-02   p_joint 2.896936e-04

Joint ci ratio: 1.213615e-01	ci left: 2.721370e-04	ci right 3.075638e-04	k: 1042	n:3600000
Cons ci ratio: 8.322740e-03	ci left: 5.780367e-02	ci right 5.828704e-02	k: 208962	n:3600000
KS ci ratio: 1.030658e-01	ci left: 3.809614e-04	ci right 4.226268e-04	k: 1445	n:3600000
FAM13A   3600000 perm   6028 sec   (597 perm/sec)   p_kst 4.013889e-04   p_cons 5.804500e-02   p_joint 2.894444e-04

Joint ci ratio: 1.211873e-01	ci left: 2.721889e-04	ci right 3.075681e-04	k: 1045	n:3610000
Cons ci ratio: 8.311846e-03	ci left: 5.779559e-02	ci right 5.827825e-02	k: 209512	n:3610000
KS ci ratio: 1.029236e-01	ci left: 3.809856e-04	ci right 4.225927e-04	k: 1449	n:3610000
FAM13A   3610000 perm   6058 sec   (596 perm/sec)   p_kst 4.013850e-04   p_cons 5.803657e-02   p_joint 2.894737e-04

Joint ci ratio: 1.210717e-01	ci left: 2.719728e-04	ci right 3.072877e-04	k: 1047	n:3620000
Cons ci ratio: 8.301435e-03	ci left: 5.778176e-02	ci right 5.826370e-02	k: 210041	n:3620000
KS ci ratio: 1.028527e-01	ci left: 3.804714e-04	ci right 4.219920e-04	k: 1451	n:3620000
FAM13A   3620000 perm   6089 sec   (595 perm/sec)   p_kst 4.008287e-04   p_cons 5.802238e-02   p_joint 2.892265e-04

Joint ci ratio: 1.208987e-01	ci left: 2.720250e-04	ci right 3.072926e-04	k: 1050	n:3630000
Cons ci ratio: 8.289997e-03	ci left: 5.778203e-02	ci right 5.826330e-02	k: 210621	n:3630000
KS ci ratio: 1.027466e-01	ci left: 3.802285e-04	ci right 4.216772e-04	k: 1454	n:3630000
FAM13A   3630000 perm   6120 sec   (593 perm/sec)   p_kst 4.005510e-04   p_cons 5.802231e-02   p_joint 2.892562e-04

Joint ci ratio: 1.207839e-01	ci left: 2.718105e-04	ci right 3.070144e-04	k: 1052	n:3640000
Cons ci ratio: 8.278711e-03	ci left: 5.778093e-02	ci right 5.826153e-02	k: 211196	n:3640000
KS ci ratio: 1.026057e-01	ci left: 3.802546e-04	ci right 4.216458e-04	k: 1458	n:3640000
FAM13A   3640000 perm   6151 sec   (592 perm/sec)   p_kst 4.005495e-04   p_cons 5.802088e-02   p_joint 2.890110e-04

Joint ci ratio: 1.206694e-01	ci left: 2.715972e-04	ci right 3.067378e-04	k: 1054	n:3650000
Cons ci ratio: 8.267823e-03	ci left: 5.777518e-02	ci right 5.825511e-02	k: 211754	n:3650000
KS ci ratio: 1.025003e-01	ci left: 3.800136e-04	ci right 4.213336e-04	k: 1461	n:3650000
FAM13A   3650000 perm   6182 sec   (590 perm/sec)   p_kst 4.002740e-04   p_cons 5.801479e-02   p_joint 2.887671e-04

Joint ci ratio: 1.204982e-01	ci left: 2.716501e-04	ci right 3.067441e-04	k: 1057	n:3660000
Cons ci ratio: 8.256461e-03	ci left: 5.777629e-02	ci right 5.825556e-02	k: 212337	n:3660000
KS ci ratio: 1.023604e-01	ci left: 3.800402e-04	ci right 4.213033e-04	k: 1465	n:3660000
FAM13A   3660000 perm   6214 sec   (589 perm/sec)   p_kst 4.002732e-04   p_cons 5.801557e-02   p_joint 2.887978e-04

Joint ci ratio: 1.204413e-01	ci left: 2.711742e-04	ci right 3.061889e-04	k: 1058	n:3670000
Cons ci ratio: 8.245702e-03	ci left: 5.777005e-02	ci right 5.824864e-02	k: 212893	n:3670000
KS ci ratio: 1.022907e-01	ci left: 3.795357e-04	ci right 4.207143e-04	k: 1467	n:3670000
FAM13A   3670000 perm   6245 sec   (588 perm/sec)   p_kst 3.997275e-04   p_cons 5.800899e-02   p_joint 2.882834e-04

Joint ci ratio: 1.203277e-01	ci left: 2.709644e-04	ci right 3.059168e-04	k: 1060	n:3680000
Cons ci ratio: 8.234800e-03	ci left: 5.776628e-02	ci right 5.824420e-02	k: 213458	n:3680000
KS ci ratio: 1.022211e-01	ci left: 3.790339e-04	ci right 4.201284e-04	k: 1469	n:3680000
FAM13A   3680000 perm   6277 sec   (586 perm/sec)   p_kst 3.991848e-04   p_cons 5.800489e-02   p_joint 2.880435e-04

Joint ci ratio: 1.201015e-01	ci left: 2.712815e-04	ci right 3.062043e-04	k: 1064	n:3690000
Cons ci ratio: 8.223227e-03	ci left: 5.777200e-02	ci right 5.824929e-02	k: 214058	n:3690000
KS ci ratio: 1.020823e-01	ci left: 3.790631e-04	ci right 4.201016e-04	k: 1473	n:3690000
FAM13A   3690000 perm   6309 sec   (585 perm/sec)   p_kst 3.991870e-04   p_cons 5.801030e-02   p_joint 2.883469e-04

Joint ci ratio: 1.198766e-01	ci left: 2.715969e-04	ci right 3.064902e-04	k: 1068	n:3700000
Cons ci ratio: 8.212211e-03	ci left: 5.777094e-02	ci right 5.824759e-02	k: 214633	n:3700000
KS ci ratio: 1.018752e-01	ci left: 3.796188e-04	ci right 4.206291e-04	k: 1479	n:3700000
FAM13A   3700000 perm   6340 sec   (584 perm/sec)   p_kst 3.997297e-04   p_cons 5.800892e-02   p_joint 2.886486e-04

Joint ci ratio: 1.197646e-01	ci left: 2.713878e-04	ci right 3.062193e-04	k: 1070	n:3710000
Cons ci ratio: 8.200612e-03	ci left: 5.777823e-02	ci right 5.825426e-02	k: 215239	n:3710000
KS ci ratio: 1.017721e-01	ci left: 3.793836e-04	ci right 4.203245e-04	k: 1482	n:3710000
FAM13A   3710000 perm   6372 sec   (582 perm/sec)   p_kst 3.994609e-04   p_cons 5.801590e-02   p_joint 2.884097e-04

Joint ci ratio: 1.197088e-01	ci left: 2.709190e-04	ci right 3.056730e-04	k: 1071	n:3720000
Cons ci ratio: 8.190109e-03	ci left: 5.777153e-02	ci right 5.824690e-02	k: 215793	n:3720000
KS ci ratio: 1.017035e-01	ci left: 3.788877e-04	ci right 4.197460e-04	k: 1484	n:3720000
FAM13A   3720000 perm   6404 sec   (581 perm/sec)   p_kst 3.989247e-04   p_cons 5.800887e-02   p_joint 2.879032e-04

Joint ci ratio: 1.194861e-01	ci left: 2.712330e-04	ci right 3.059580e-04	k: 1075	n:3730000
Cons ci ratio: 8.179145e-03	ci left: 5.777156e-02	ci right 5.824628e-02	k: 216372	n:3730000
KS ci ratio: 1.015668e-01	ci left: 3.789171e-04	ci right 4.197203e-04	k: 1488	n:3730000
FAM13A   3730000 perm   6439 sec   (579 perm/sec)   p_kst 3.989276e-04   p_cons 5.800858e-02   p_joint 2.882038e-04

Joint ci ratio: 1.194306e-01	ci left: 2.707672e-04	ci right 3.054153e-04	k: 1076	n:3740000
Cons ci ratio: 8.168185e-03	ci left: 5.777212e-02	ci right 5.824621e-02	k: 216953	n:3740000
KS ci ratio: 1.015328e-01	ci left: 3.781645e-04	ci right 4.188722e-04	k: 1489	n:3740000
FAM13A   3740000 perm   6471 sec   (578 perm/sec)   p_kst 3.981283e-04   p_cons 5.800882e-02   p_joint 2.877005e-04

Joint ci ratio: 1.192646e-01	ci left: 2.708212e-04	ci right 3.054247e-04	k: 1079	n:3750000
Cons ci ratio: 8.156990e-03	ci left: 5.777641e-02	ci right 5.824988e-02	k: 217548	n:3750000
KS ci ratio: 1.014307e-01	ci left: 3.779358e-04	ci right 4.185755e-04	k: 1492	n:3750000
FAM13A   3750000 perm   6503 sec   (577 perm/sec)   p_kst 3.978667e-04   p_cons 5.801280e-02   p_joint 2.877333e-04

Joint ci ratio: 1.190443e-01	ci left: 2.711331e-04	ci right 3.057079e-04	k: 1083	n:3760000
Cons ci ratio: 8.146078e-03	ci left: 5.777748e-02	ci right 5.825033e-02	k: 218131	n:3760000
KS ci ratio: 1.012951e-01	ci left: 3.779675e-04	ci right 4.185531e-04	k: 1496	n:3760000
FAM13A   3760000 perm   6536 sec   (575 perm/sec)   p_kst 3.978723e-04   p_cons 5.801356e-02   p_joint 2.880319e-04

Joint ci ratio: 1.189347e-01	ci left: 2.709286e-04	ci right 3.054433e-04	k: 1085	n:3770000
Cons ci ratio: 8.135112e-03	ci left: 5.777988e-02	ci right 5.825210e-02	k: 218719	n:3770000
KS ci ratio: 1.012276e-01	ci left: 3.774820e-04	ci right 4.179868e-04	k: 1498	n:3770000
FAM13A   3770000 perm   6568 sec   (574 perm/sec)   p_kst 3.973475e-04   p_cons 5.801565e-02   p_joint 2.877984e-04

Joint ci ratio: 1.187708e-01	ci left: 2.709819e-04	ci right 3.054525e-04	k: 1088	n:3780000
Cons ci ratio: 8.123620e-03	ci left: 5.778992e-02	ci right 5.826155e-02	k: 219336	n:3780000
KS ci ratio: 1.010592e-01	ci left: 3.777726e-04	ci right 4.182372e-04	k: 1503	n:3780000
FAM13A   3780000 perm   6600 sec   (573 perm/sec)   p_kst 3.976190e-04   p_cons 5.802540e-02   p_joint 2.878307e-04

Joint ci ratio: 1.184990e-01	ci left: 2.715471e-04	ci right 3.060050e-04	k: 1093	n:3790000
Cons ci ratio: 8.112666e-03	ci left: 5.779332e-02	ci right 5.826434e-02	k: 219928	n:3790000
KS ci ratio: 1.008582e-01	ci left: 3.783190e-04	ci right 4.187567e-04	k: 1509	n:3790000
FAM13A   3790000 perm   6633 sec   (571 perm/sec)   p_kst 3.981530e-04   p_cons 5.802850e-02   p_joint 2.883905e-04

Joint ci ratio: 1.182829e-01	ci left: 2.718539e-04	ci right 3.062835e-04	k: 1097	n:3800000
Cons ci ratio: 8.101853e-03	ci left: 5.779540e-02	ci right 5.826580e-02	k: 220515	n:3800000
KS ci ratio: 1.006916e-01	ci left: 3.786061e-04	ci right 4.190037e-04	k: 1514	n:3800000
FAM13A   3800000 perm   6665 sec   (570 perm/sec)   p_kst 3.984211e-04   p_cons 5.803026e-02   p_joint 2.886842e-04

Joint ci ratio: 1.182291e-01	ci left: 2.713951e-04	ci right 3.057498e-04	k: 1098	n:3810000
Cons ci ratio: 8.092211e-03	ci left: 5.778226e-02	ci right 5.825200e-02	k: 221044	n:3810000
KS ci ratio: 1.006584e-01	ci left: 3.778682e-04	ci right 4.181730e-04	k: 1515	n:3810000
FAM13A   3810000 perm   6698 sec   (569 perm/sec)   p_kst 3.976378e-04   p_cons 5.801680e-02   p_joint 2.881890e-04

Joint ci ratio: 1.181217e-01	ci left: 2.711927e-04	ci right 3.054884e-04	k: 1100	n:3820000
Cons ci ratio: 8.081441e-03	ci left: 5.778488e-02	ci right 5.825401e-02	k: 221633	n:3820000
KS ci ratio: 1.005590e-01	ci left: 3.776446e-04	ci right 4.178834e-04	k: 1518	n:3820000
FAM13A   3820000 perm   6730 sec   (568 perm/sec)   p_kst 3.973822e-04   p_cons 5.801911e-02   p_joint 2.879581e-04

Joint ci ratio: 1.180146e-01	ci left: 2.709914e-04	ci right 3.052284e-04	k: 1102	n:3830000
Cons ci ratio: 8.071003e-03	ci left: 5.778357e-02	ci right 5.825208e-02	k: 222207	n:3830000
KS ci ratio: 1.004928e-01	ci left: 3.771676e-04	ci right 4.173277e-04	k: 1520	n:3830000
FAM13A   3830000 perm   6762 sec   (566 perm/sec)   p_kst 3.968668e-04   p_cons 5.801749e-02   p_joint 2.877285e-04

Joint ci ratio: 1.313097e-01	ci left: 2.167937e-04	ci right 2.475099e-04	k: 890	n:3840000
Cons ci ratio: 8.060376e-03	ci left: 5.778539e-02	ci right 5.825330e-02	k: 222793	n:3840000
KS ci ratio: 1.003610e-01	ci left: 3.772009e-04	ci right 4.173087e-04	k: 1524	n:3840000
FAM13A   3840000 perm   6795 sec   (565 perm/sec)   p_kst 3.968750e-04   p_cons 5.801901e-02   p_joint 2.317708e-04

Joint ci ratio: 1.175360e-01	ci left: 2.718525e-04	ci right 3.060493e-04	k: 1111	n:3850000
Cons ci ratio: 8.049694e-03	ci left: 5.778850e-02	ci right 5.825581e-02	k: 223384	n:3850000
KS ci ratio: 1.001314e-01	ci left: 3.779938e-04	ci right 4.180885e-04	k: 1531	n:3850000
FAM13A   3850000 perm   6828 sec   (564 perm/sec)   p_kst 3.976623e-04   p_cons 5.802182e-02   p_joint 2.885714e-04

Joint ci ratio: 1.174305e-01	ci left: 2.716511e-04	ci right 3.057898e-04	k: 1113	n:3860000
Cons ci ratio: 8.039074e-03	ci left: 5.779133e-02	ci right 5.825804e-02	k: 223974	n:3860000
KS ci ratio: 1.000009e-01	ci left: 3.780249e-04	ci right 4.180676e-04	k: 1535	n:3860000
FAM13A   3860000 perm   6860 sec   (563 perm/sec)   p_kst 3.976684e-04   p_cons 5.802435e-02   p_joint 2.883420e-04

Joint ci ratio: 1.171678e-01	ci left: 2.722032e-04	ci right 3.063295e-04	k: 1118	n:3870000
Cons ci ratio: 8.029521e-03	ci left: 5.778022e-02	ci right 5.824628e-02	k: 224510	n:3870000
KS ci ratio: 9.983854e-02	ci left: 3.783078e-04	ci right 4.183116e-04	k: 1540	n:3870000
FAM13A   3870000 perm   6893 sec   (561 perm/sec)   p_kst 3.979328e-04   p_cons 5.801292e-02   p_joint 2.888889e-04

Joint ci ratio: 1.170632e-01	ci left: 2.720020e-04	ci right 3.060706e-04	k: 1120	n:3880000
Cons ci ratio: 8.019585e-03	ci left: 5.777482e-02	ci right 5.824027e-02	k: 225068	n:3880000
KS ci ratio: 9.970921e-02	ci left: 3.783380e-04	ci right 4.182901e-04	k: 1544	n:3880000
FAM13A   3880000 perm   6927 sec   (560 perm/sec)   p_kst 3.979381e-04   p_cons 5.800722e-02   p_joint 2.886598e-04

Joint ci ratio: 1.170633e-01	ci left: 2.713028e-04	ci right 3.052838e-04	k: 1120	n:3890000
Cons ci ratio: 8.009102e-03	ci left: 5.777741e-02	ci right 5.824227e-02	k: 225657	n:3890000
KS ci ratio: 9.967700e-02	ci left: 3.776160e-04	ci right 4.174783e-04	k: 1545	n:3890000
FAM13A   3890000 perm   6960 sec   (559 perm/sec)   p_kst 3.971722e-04   p_cons 5.800951e-02   p_joint 2.879177e-04

Joint ci ratio: 1.167512e-01	ci left: 2.721006e-04	ci right 3.060844e-04	k: 1126	n:3900000
Cons ci ratio: 7.999318e-03	ci left: 5.777103e-02	ci right 5.823526e-02	k: 226211	n:3900000
KS ci ratio: 9.945206e-02	ci left: 3.783980e-04	ci right 4.182474e-04	k: 1552	n:3900000
FAM13A   3900000 perm   6993 sec   (558 perm/sec)   p_kst 3.979487e-04   p_cons 5.800282e-02   p_joint 2.887179e-04

Joint ci ratio: 1.166994e-01	ci left: 2.716530e-04	ci right 3.055648e-04	k: 1127	n:3910000
Cons ci ratio: 7.987680e-03	ci left: 5.779047e-02	ci right 5.825418e-02	k: 226866	n:3910000
KS ci ratio: 9.942010e-02	ci left: 3.776796e-04	ci right 4.174398e-04	k: 1553	n:3910000
FAM13A   3910000 perm   7026 sec   (557 perm/sec)   p_kst 3.971867e-04   p_cons 5.802199e-02   p_joint 2.882353e-04

Joint ci ratio: 1.164931e-01	ci left: 2.719507e-04	ci right 3.058355e-04	k: 1131	n:3920000
Cons ci ratio: 7.977620e-03	ci left: 5.778892e-02	ci right 5.825203e-02	k: 227439	n:3920000
KS ci ratio: 9.929239e-02	ci left: 3.777112e-04	ci right 4.174206e-04	k: 1557	n:3920000
FAM13A   3920000 perm   7060 sec   (555 perm/sec)   p_kst 3.971939e-04   p_cons 5.802015e-02   p_joint 2.885204e-04

Joint ci ratio: 1.164931e-01	ci left: 2.712587e-04	ci right 3.050573e-04	k: 1131	n:3930000
Cons ci ratio: 7.967616e-03	ci left: 5.778714e-02	ci right 5.824965e-02	k: 228011	n:3930000
KS ci ratio: 9.929244e-02	ci left: 3.767501e-04	ci right 4.163585e-04	k: 1557	n:3930000
FAM13A   3930000 perm   7093 sec   (554 perm/sec)   p_kst 3.961832e-04   p_cons 5.801807e-02   p_joint 2.877863e-04

Joint ci ratio: 1.297180e-01	ci left: 2.166927e-04	ci right 2.469939e-04	k: 912	n:3940000
Cons ci ratio: 7.957557e-03	ci left: 5.778662e-02	ci right 5.824854e-02	k: 228588	n:3940000
KS ci ratio: 9.916522e-02	ci left: 3.767839e-04	ci right 4.163422e-04	k: 1561	n:3940000
FAM13A   3940000 perm   7127 sec   (553 perm/sec)   p_kst 3.961929e-04   p_cons 5.801726e-02   p_joint 2.314721e-04

Joint ci ratio: 1.294348e-01	ci left: 2.171240e-04	ci right 2.474140e-04	k: 916	n:3950000
Cons ci ratio: 7.947886e-03	ci left: 5.778131e-02	ci right 5.824263e-02	k: 229146	n:3950000
KS ci ratio: 9.900687e-02	ci left: 3.770645e-04	ci right 4.165853e-04	k: 1566	n:3950000
FAM13A   3950000 perm   7160 sec   (552 perm/sec)   p_kst 3.964557e-04   p_cons 5.801165e-02   p_joint 2.318987e-04

Joint ci ratio: 1.290133e-01	ci left: 2.180419e-04	ci right 2.483534e-04	k: 922	n:3960000
Cons ci ratio: 7.937883e-03	ci left: 5.778107e-02	ci right 5.824180e-02	k: 229724	n:3960000
KS ci ratio: 9.881784e-02	ci left: 3.775900e-04	ci right 4.170860e-04	k: 1572	n:3960000
FAM13A   3960000 perm   7195 sec   (550 perm/sec)   p_kst 3.969697e-04   p_cons 5.801111e-02   p_joint 2.328283e-04

Joint ci ratio: 1.287346e-01	ci left: 2.184677e-04	ci right 2.487678e-04	k: 926	n:3970000
Cons ci ratio: 7.928339e-03	ci left: 5.777505e-02	ci right 5.823517e-02	k: 230279	n:3970000
KS ci ratio: 9.862989e-02	ci left: 3.781129e-04	ci right 4.175840e-04	k: 1578	n:3970000
FAM13A   3970000 perm   7228 sec   (549 perm/sec)   p_kst 3.974811e-04   p_cons 5.800479e-02   p_joint 2.332494e-04

Joint ci ratio: 1.285268e-01	ci left: 2.186483e-04	ci right 2.489208e-04	k: 929	n:3980000
Cons ci ratio: 7.918337e-03	ci left: 5.777582e-02	ci right 5.823537e-02	k: 230861	n:3980000
KS ci ratio: 9.847409e-02	ci left: 3.783882e-04	ci right 4.178220e-04	k: 1583	n:3980000
FAM13A   3980000 perm   7262 sec   (548 perm/sec)   p_kst 3.977387e-04   p_cons 5.800528e-02   p_joint 2.334171e-04

Joint ci ratio: 1.283889e-01	ci left: 2.185855e-04	ci right 2.488143e-04	k: 931	n:3990000
Cons ci ratio: 7.908808e-03	ci left: 5.777059e-02	ci right 5.822955e-02	k: 231419	n:3990000
KS ci ratio: 9.831903e-02	ci left: 3.786621e-04	ci right 4.180588e-04	k: 1588	n:3990000
FAM13A   3990000 perm   7297 sec   (547 perm/sec)   p_kst 3.979950e-04   p_cons 5.799975e-02   p_joint 2.333333e-04

Joint ci ratio: 1.283201e-01	ci left: 2.182810e-04	ci right 2.484502e-04	k: 932	n:4000000
Cons ci ratio: 7.899223e-03	ci left: 5.776664e-02	ci right 5.822500e-02	k: 231982	n:4000000
KS ci ratio: 9.822636e-02	ci left: 3.784470e-04	ci right 4.177821e-04	k: 1591	n:4000000
FAM13A   4000000 perm   7331 sec   (546 perm/sec)   p_kst 3.977500e-04   p_cons 5.799550e-02   p_joint 2.330000e-04

Joint ci ratio: 1.283201e-01	ci left: 2.177366e-04	ci right 2.478307e-04	k: 932	n:4010000
Cons ci ratio: 7.889943e-03	ci left: 5.775897e-02	ci right 5.821673e-02	k: 232530	n:4010000
KS ci ratio: 9.816474e-02	ci left: 3.779898e-04	ci right 4.172512e-04	k: 1593	n:4010000
FAM13A   4010000 perm   7365 sec   (544 perm/sec)   p_kst 3.972569e-04   p_cons 5.798753e-02   p_joint 2.324190e-04

Joint ci ratio: 1.280459e-01	ci left: 2.181581e-04	ci right 2.482411e-04	k: 936	n:4020000
Cons ci ratio: 7.880157e-03	ci left: 5.775879e-02	ci right 5.821598e-02	k: 233108	n:4020000
KS ci ratio: 9.798048e-02	ci left: 3.785054e-04	ci right 4.177424e-04	k: 1599	n:4020000
FAM13A   4020000 perm   7400 sec   (543 perm/sec)   p_kst 3.977612e-04   p_cons 5.798706e-02   p_joint 2.328358e-04

Joint ci ratio: 1.279776e-01	ci left: 2.178570e-04	ci right 2.478812e-04	k: 937	n:4030000
Cons ci ratio: 7.870372e-03	ci left: 5.775910e-02	ci right 5.821572e-02	k: 233688	n:4030000
KS ci ratio: 9.779726e-02	ci left: 3.790186e-04	ci right 4.182311e-04	k: 1605	n:4030000
FAM13A   4030000 perm   7434 sec   (542 perm/sec)   p_kst 3.982630e-04   p_cons 5.798710e-02   p_joint 2.325062e-04

Joint ci ratio: 1.279095e-01	ci left: 2.175573e-04	ci right 2.475231e-04	k: 938	n:4040000
Cons ci ratio: 7.860605e-03	ci left: 5.775967e-02	ci right 5.821572e-02	k: 234269	n:4040000
KS ci ratio: 9.761506e-02	ci left: 3.795293e-04	ci right 4.187173e-04	k: 1611	n:4040000
FAM13A   4040000 perm   7469 sec   (541 perm/sec)   p_kst 3.987624e-04   p_cons 5.798738e-02   p_joint 2.321782e-04

Joint ci ratio: 1.277735e-01	ci left: 2.174982e-04	ci right 2.474215e-04	k: 940	n:4050000
Cons ci ratio: 7.850485e-03	ci left: 5.776565e-02	ci right 5.822116e-02	k: 234872	n:4050000
KS ci ratio: 9.749418e-02	ci left: 3.795557e-04	ci right 4.186952e-04	k: 1615	n:4050000
FAM13A   4050000 perm   7502 sec   (540 perm/sec)   p_kst 3.987654e-04   p_cons 5.799309e-02   p_joint 2.320988e-04

Joint ci ratio: 1.277057e-01	ci left: 2.172009e-04	ci right 2.470663e-04	k: 941	n:4060000
Cons ci ratio: 7.840898e-03	ci left: 5.776471e-02	ci right 5.821966e-02	k: 235447	n:4060000
KS ci ratio: 9.737374e-02	ci left: 3.795821e-04	ci right 4.186731e-04	k: 1619	n:4060000
FAM13A   4060000 perm   7535 sec   (539 perm/sec)   p_kst 3.987685e-04   p_cons 5.799187e-02   p_joint 2.317734e-04

Joint ci ratio: 1.272337e-01	ci left: 2.183323e-04	ci right 2.482339e-04	k: 948	n:4070000
Cons ci ratio: 7.831522e-03	ci left: 5.776133e-02	ci right 5.821571e-02	k: 236012	n:4070000
KS ci ratio: 9.713415e-02	ci left: 3.805673e-04	ci right 4.196578e-04	k: 1627	n:4070000
FAM13A   4070000 perm   7569 sec   (538 perm/sec)   p_kst 3.997543e-04   p_cons 5.798821e-02   p_joint 2.329238e-04

Joint ci ratio: 1.272338e-01	ci left: 2.177972e-04	ci right 2.476255e-04	k: 948	n:4080000
Cons ci ratio: 7.821776e-03	ci left: 5.776360e-02	ci right 5.821742e-02	k: 236600	n:4080000
KS ci ratio: 9.707456e-02	ci left: 3.801128e-04	ci right 4.191314e-04	k: 1629	n:4080000
FAM13A   4080000 perm   7603 sec   (537 perm/sec)   p_kst 3.992647e-04   p_cons 5.799020e-02   p_joint 2.323529e-04

Joint ci ratio: 1.271668e-01	ci left: 2.175014e-04	ci right 2.472724e-04	k: 949	n:4090000
Cons ci ratio: 7.812259e-03	ci left: 5.776317e-02	ci right 5.821643e-02	k: 237177	n:4090000
KS ci ratio: 9.695567e-02	ci left: 3.801377e-04	ci right 4.191083e-04	k: 1633	n:4090000
FAM13A   4090000 perm   7637 sec   (536 perm/sec)   p_kst 3.992665e-04   p_cons 5.798949e-02   p_joint 2.320293e-04

Joint ci ratio: 1.271668e-01	ci left: 2.169709e-04	ci right 2.466693e-04	k: 949	n:4100000
Cons ci ratio: 7.802498e-03	ci left: 5.776663e-02	ci right 5.821936e-02	k: 237770	n:4100000
KS ci ratio: 9.689641e-02	ci left: 3.796865e-04	ci right 4.185857e-04	k: 1635	n:4100000
FAM13A   4100000 perm   7672 sec   (534 perm/sec)   p_kst 3.987805e-04   p_cons 5.799268e-02   p_joint 2.314634e-04

Joint ci ratio: 1.270332e-01	ci left: 2.169141e-04	ci right 2.465712e-04	k: 951	n:4110000
Cons ci ratio: 7.793329e-03	ci left: 5.776231e-02	ci right 5.821447e-02	k: 238331	n:4110000
KS ci ratio: 9.680771e-02	ci left: 3.794749e-04	ci right 4.183149e-04	k: 1638	n:4110000
FAM13A   4110000 perm   7706 sec   (533 perm/sec)   p_kst 3.985401e-04   p_cons 5.798808e-02   p_joint 2.313869e-04

Joint ci ratio: 1.270332e-01	ci left: 2.163876e-04	ci right 2.459727e-04	k: 951	n:4120000
Cons ci ratio: 7.784416e-03	ci left: 5.775486e-02	ci right 5.820644e-02	k: 238879	n:4120000
KS ci ratio: 9.680775e-02	ci left: 3.785539e-04	ci right 4.172996e-04	k: 1638	n:4120000
FAM13A   4120000 perm   7740 sec   (532 perm/sec)   p_kst 3.975728e-04   p_cons 5.798034e-02   p_joint 2.308252e-04

Joint ci ratio: 1.270333e-01	ci left: 2.158637e-04	ci right 2.453771e-04	k: 951	n:4130000
Cons ci ratio: 7.774845e-03	ci left: 5.775712e-02	ci right 5.820815e-02	k: 239467	n:4130000
KS ci ratio: 9.677827e-02	ci left: 3.778735e-04	ci right 4.165371e-04	k: 1639	n:4130000
FAM13A   4130000 perm   7775 sec   (531 perm/sec)   p_kst 3.968523e-04   p_cons 5.798232e-02   p_joint 2.302663e-04

Joint ci ratio: 1.269000e-01	ci left: 2.158100e-04	ci right 2.452829e-04	k: 953	n:4140000
Cons ci ratio: 7.765532e-03	ci left: 5.775622e-02	ci right 5.820671e-02	k: 240042	n:4140000
KS ci ratio: 9.668988e-02	ci left: 3.776679e-04	ci right 4.162732e-04	k: 1642	n:4140000
FAM13A   4140000 perm   7809 sec   (530 perm/sec)   p_kst 3.966184e-04   p_cons 5.798116e-02   p_joint 2.301932e-04

Joint ci ratio: 1.267010e-01	ci left: 2.159900e-04	ci right 2.454376e-04	k: 956	n:4150000
Cons ci ratio: 7.756304e-03	ci left: 5.775462e-02	ci right 5.820455e-02	k: 240614	n:4150000
KS ci ratio: 9.654308e-02	ci left: 3.779336e-04	ci right 4.165040e-04	k: 1647	n:4150000
FAM13A   4150000 perm   7844 sec   (529 perm/sec)   p_kst 3.968675e-04   p_cons 5.797928e-02   p_joint 2.303614e-04

Joint ci ratio: 1.265688e-01	ci left: 2.159363e-04	ci right 2.453436e-04	k: 958	n:4160000
Cons ci ratio: 7.747484e-03	ci left: 5.774774e-02	ci right 5.819711e-02	k: 241164	n:4160000
KS ci ratio: 9.636779e-02	ci left: 3.784326e-04	ci right 4.169799e-04	k: 1653	n:4160000
FAM13A   4160000 perm   7879 sec   (528 perm/sec)   p_kst 3.973558e-04   p_cons 5.797212e-02   p_joint 2.302885e-04

Joint ci ratio: 1.263713e-01	ci left: 2.161151e-04	ci right 2.454974e-04	k: 961	n:4170000
Cons ci ratio: 7.738745e-03	ci left: 5.774017e-02	ci right 5.818898e-02	k: 241711	n:4170000
KS ci ratio: 9.628053e-02	ci left: 3.782272e-04	ci right 4.167167e-04	k: 1656	n:4170000
FAM13A   4170000 perm   7914 sec   (527 perm/sec)   p_kst 3.971223e-04   p_cons 5.796427e-02   p_joint 2.304556e-04

Joint ci ratio: 1.262401e-01	ci left: 2.160615e-04	ci right 2.454037e-04	k: 963	n:4180000
Cons ci ratio: 7.729799e-03	ci left: 5.773599e-02	ci right 5.818424e-02	k: 242272	n:4180000
KS ci ratio: 9.622250e-02	ci left: 3.777893e-04	ci right 4.162098e-04	k: 1658	n:4180000
FAM13A   4180000 perm   7948 sec   (526 perm/sec)   p_kst 3.966507e-04   p_cons 5.795981e-02   p_joint 2.303828e-04

Joint ci ratio: 1.261747e-01	ci left: 2.157769e-04	ci right 2.450642e-04	k: 964	n:4190000
Cons ci ratio: 7.720714e-03	ci left: 5.773421e-02	ci right 5.818192e-02	k: 242843	n:4190000
KS ci ratio: 9.616457e-02	ci left: 3.773535e-04	ci right 4.157052e-04	k: 1660	n:4190000
FAM13A   4190000 perm   7982 sec   (525 perm/sec)   p_kst 3.961814e-04   p_cons 5.795776e-02   p_joint 2.300716e-04

Joint ci ratio: 1.260442e-01	ci left: 2.157243e-04	ci right 2.449719e-04	k: 966	n:4200000
Cons ci ratio: 7.711090e-03	ci left: 5.774052e-02	ci right 5.818771e-02	k: 243448	n:4200000
KS ci ratio: 9.607786e-02	ci left: 3.771521e-04	ci right 4.154469e-04	k: 1663	n:4200000
FAM13A   4200000 perm   8017 sec   (524 perm/sec)   p_kst 3.959524e-04   p_cons 5.796381e-02   p_joint 2.300000e-04

Joint ci ratio: 1.256549e-01	ci left: 2.165923e-04	ci right 2.458601e-04	k: 972	n:4210000
Cons ci ratio: 7.702121e-03	ci left: 5.773802e-02	ci right 5.818468e-02	k: 244016	n:4210000
KS ci ratio: 9.579039e-02	ci left: 3.785746e-04	ci right 4.168924e-04	k: 1673	n:4210000
FAM13A   4210000 perm   8053 sec   (523 perm/sec)   p_kst 3.973872e-04   p_cons 5.796105e-02   p_joint 2.308789e-04

Joint ci ratio: 1.254616e-01	ci left: 2.167676e-04	ci right 2.460107e-04	k: 975	n:4220000
Cons ci ratio: 7.692884e-03	ci left: 5.773980e-02	ci right 5.818593e-02	k: 244602	n:4220000
KS ci ratio: 9.564764e-02	ci left: 3.788340e-04	ci right 4.171176e-04	k: 1678	n:4220000
FAM13A   4220000 perm   8089 sec   (522 perm/sec)   p_kst 3.976303e-04   p_cons 5.796256e-02   p_joint 2.310427e-04

Joint ci ratio: 1.253974e-01	ci left: 2.164841e-04	ci right 2.456729e-04	k: 976	n:4230000
Cons ci ratio: 7.684195e-03	ci left: 5.773425e-02	ci right 5.817983e-02	k: 245157	n:4230000
KS ci ratio: 9.559075e-02	ci left: 3.783999e-04	ci right 4.166157e-04	k: 1680	n:4230000
FAM13A   4230000 perm   8125 sec   (521 perm/sec)   p_kst 3.971631e-04   p_cons 5.795674e-02   p_joint 2.307329e-04

Joint ci ratio: 1.251415e-01	ci left: 2.168874e-04	ci right 2.460664e-04	k: 980	n:4240000
Cons ci ratio: 7.675369e-03	ci left: 5.773108e-02	ci right 5.817612e-02	k: 245722	n:4240000
KS ci ratio: 9.547722e-02	ci left: 3.784283e-04	ci right 4.165990e-04	k: 1684	n:4240000
FAM13A   4240000 perm   8161 sec   (520 perm/sec)   p_kst 3.971698e-04   p_cons 5.795330e-02   p_joint 2.311321e-04

Joint ci ratio: 1.250141e-01	ci left: 2.168329e-04	ci right 2.459728e-04	k: 982	n:4250000
Cons ci ratio: 7.666624e-03	ci left: 5.772723e-02	ci right 5.817173e-02	k: 246284	n:4250000
KS ci ratio: 9.542063e-02	ci left: 3.779972e-04	ci right 4.161006e-04	k: 1686	n:4250000
FAM13A   4250000 perm   8197 sec   (518 perm/sec)   p_kst 3.967059e-04   p_cons 5.794918e-02   p_joint 2.310588e-04

Joint ci ratio: 1.246973e-01	ci left: 2.174610e-04	ci right 2.466057e-04	k: 987	n:4260000
Cons ci ratio: 7.657628e-03	ci left: 5.772737e-02	ci right 5.817135e-02	k: 246863	n:4260000
KS ci ratio: 9.522324e-02	ci left: 3.787139e-04	ci right 4.168062e-04	k: 1693	n:4260000
FAM13A   4260000 perm   8234 sec   (517 perm/sec)   p_kst 3.974178e-04   p_cons 5.794906e-02   p_joint 2.316901e-04

Joint ci ratio: 1.245713e-01	ci left: 2.174055e-04	ci right 2.465111e-04	k: 989	n:4270000
Cons ci ratio: 7.649518e-03	ci left: 5.771536e-02	ci right 5.815878e-02	k: 247390	n:4270000
KS ci ratio: 9.511101e-02	ci left: 3.787415e-04	ci right 4.167891e-04	k: 1697	n:4270000
FAM13A   4270000 perm   8271 sec   (516 perm/sec)   p_kst 3.974239e-04   p_cons 5.793677e-02   p_joint 2.316159e-04

Joint ci ratio: 1.245085e-01	ci left: 2.171239e-04	ci right 2.461761e-04	k: 990	n:4280000
Cons ci ratio: 7.640844e-03	ci left: 5.771180e-02	ci right 5.815468e-02	k: 247953	n:4280000
KS ci ratio: 9.502711e-02	ci left: 3.785408e-04	ci right 4.165329e-04	k: 1700	n:4280000
FAM13A   4280000 perm   8307 sec   (515 perm/sec)   p_kst 3.971963e-04   p_cons 5.793294e-02   p_joint 2.313084e-04

Joint ci ratio: 1.243830e-01	ci left: 2.170695e-04	ci right 2.460830e-04	k: 992	n:4290000
Cons ci ratio: 7.632167e-03	ci left: 5.770872e-02	ci right 5.815108e-02	k: 248518	n:4290000
KS ci ratio: 9.494344e-02	ci left: 3.783412e-04	ci right 4.162779e-04	k: 1703	n:4290000
FAM13A   4290000 perm   8344 sec   (514 perm/sec)   p_kst 3.969697e-04   p_cons 5.792960e-02   p_joint 2.312354e-04

Joint ci ratio: 1.243831e-01	ci left: 2.165646e-04	ci right 2.455107e-04	k: 992	n:4300000
Cons ci ratio: 7.623568e-03	ci left: 5.770497e-02	ci right 5.814679e-02	k: 249080	n:4300000
KS ci ratio: 9.491562e-02	ci left: 3.776883e-04	ci right 4.155479e-04	k: 1704	n:4300000
FAM13A   4300000 perm   8381 sec   (513 perm/sec)   p_kst 3.962791e-04   p_cons 5.792558e-02   p_joint 2.306977e-04

Joint ci ratio: 1.242580e-01	ci left: 2.165118e-04	ci right 2.454195e-04	k: 994	n:4310000
Cons ci ratio: 7.614334e-03	ci left: 5.771072e-02	ci right 5.815205e-02	k: 249683	n:4310000
KS ci ratio: 9.483224e-02	ci left: 3.774916e-04	ci right 4.152963e-04	k: 1707	n:4310000
FAM13A   4310000 perm   8419 sec   (512 perm/sec)   p_kst 3.960557e-04   p_cons 5.793109e-02   p_joint 2.306265e-04

Joint ci ratio: 1.241333e-01	ci left: 2.164592e-04	ci right 2.453288e-04	k: 996	n:4320000
Cons ci ratio: 7.604876e-03	ci left: 5.772015e-02	ci right 5.816100e-02	k: 250302	n:4320000
KS ci ratio: 9.474908e-02	ci left: 3.772957e-04	ci right 4.150459e-04	k: 1710	n:4320000
FAM13A   4320000 perm   8457 sec   (511 perm/sec)   p_kst 3.958333e-04   p_cons 5.794028e-02   p_joint 2.305556e-04

Joint ci ratio: 1.240711e-01	ci left: 2.161830e-04	ci right 2.450003e-04	k: 997	n:4330000
Cons ci ratio: 7.595807e-03	ci left: 5.772446e-02	ci right 5.816482e-02	k: 250899	n:4330000
KS ci ratio: 9.472143e-02	ci left: 3.766498e-04	ci right 4.143238e-04	k: 1711	n:4330000
FAM13A   4330000 perm   8494 sec   (510 perm/sec)   p_kst 3.951501e-04   p_cons 5.794434e-02   p_joint 2.302540e-04

Joint ci ratio: 1.240711e-01	ci left: 2.156849e-04	ci right 2.444358e-04	k: 997	n:4340000
Cons ci ratio: 7.586642e-03	ci left: 5.773059e-02	ci right 5.817046e-02	k: 251504	n:4340000
KS ci ratio: 9.469381e-02	ci left: 3.760069e-04	ci right 4.136050e-04	k: 1712	n:4340000
FAM13A   4340000 perm   8531 sec   (509 perm/sec)   p_kst 3.944700e-04   p_cons 5.795023e-02   p_joint 2.297235e-04

Joint ci ratio: 1.238851e-01	ci left: 2.158574e-04	ci right 2.445849e-04	k: 1000	n:4350000
Cons ci ratio: 7.578148e-03	ci left: 5.772751e-02	ci right 5.816687e-02	k: 252069	n:4350000
KS ci ratio: 9.455591e-02	ci left: 3.762648e-04	ci right 4.138308e-04	k: 1717	n:4350000
FAM13A   4350000 perm   8569 sec   (508 perm/sec)   p_kst 3.947126e-04   p_cons 5.794690e-02   p_joint 2.298851e-04

Joint ci ratio: 1.235768e-01	ci left: 2.164736e-04	ci right 2.452062e-04	k: 1005	n:4360000
Cons ci ratio: 7.569333e-03	ci left: 5.772949e-02	ci right 5.816834e-02	k: 252656	n:4360000
KS ci ratio: 9.436383e-02	ci left: 3.769694e-04	ci right 4.145250e-04	k: 1724	n:4360000
FAM13A   4360000 perm   8608 sec   (506 perm/sec)   p_kst 3.954128e-04   p_cons 5.794862e-02   p_joint 2.305046e-04

Joint ci ratio: 1.235768e-01	ci left: 2.159782e-04	ci right 2.446451e-04	k: 1005	n:4370000
Cons ci ratio: 7.560818e-03	ci left: 5.772757e-02	ci right 5.816592e-02	k: 253226	n:4370000
KS ci ratio: 9.436387e-02	ci left: 3.761067e-04	ci right 4.135765e-04	k: 1724	n:4370000
FAM13A   4370000 perm   8648 sec   (505 perm/sec)   p_kst 3.945080e-04   p_cons 5.794645e-02   p_joint 2.299771e-04

Joint ci ratio: 1.232708e-01	ci left: 2.165914e-04	ci right 2.452633e-04	k: 1010	n:4380000
Cons ci ratio: 7.551889e-03	ci left: 5.773205e-02	ci right 5.816991e-02	k: 253824	n:4380000
KS ci ratio: 9.420016e-02	ci left: 3.765856e-04	ci right 4.140344e-04	k: 1730	n:4380000
FAM13A   4380000 perm   8687 sec   (504 perm/sec)   p_kst 3.949772e-04   p_cons 5.795068e-02   p_joint 2.305936e-04

Joint ci ratio: 1.229671e-01	ci left: 2.172019e-04	ci right 2.458786e-04	k: 1015	n:4390000
Cons ci ratio: 7.543669e-03	ci left: 5.772672e-02	ci right 5.816406e-02	k: 254379	n:4390000
KS ci ratio: 9.395617e-02	ci left: 3.777297e-04	ci right 4.151896e-04	k: 1739	n:4390000
FAM13A   4390000 perm   8725 sec   (503 perm/sec)   p_kst 3.961276e-04   p_cons 5.794510e-02   p_joint 2.312073e-04

Joint ci ratio: 1.227257e-01	ci left: 2.175894e-04	ci right 2.462568e-04	k: 1019	n:4400000
Cons ci ratio: 7.535679e-03	ci left: 5.771848e-02	ci right 5.815529e-02	k: 254921	n:4400000
KS ci ratio: 9.379457e-02	ci left: 3.782028e-04	ci right 4.156416e-04	k: 1745	n:4400000
FAM13A   4400000 perm   8762 sec   (502 perm/sec)   p_kst 3.965909e-04   p_cons 5.793659e-02   p_joint 2.315909e-04

Joint ci ratio: 1.224260e-01	ci left: 2.181951e-04	ci right 2.468669e-04	k: 1024	n:4410000
Cons ci ratio: 7.527402e-03	ci left: 5.771479e-02	ci right 5.815109e-02	k: 255483	n:4410000
KS ci ratio: 9.360709e-02	ci left: 3.788953e-04	ci right 4.163236e-04	k: 1752	n:4410000
FAM13A   4410000 perm   8799 sec   (501 perm/sec)   p_kst 3.972789e-04   p_cons 5.793265e-02   p_joint 2.321995e-04

Joint ci ratio: 1.223663e-01	ci left: 2.179207e-04	ci right 2.465416e-04	k: 1025	n:4420000
Cons ci ratio: 7.518513e-03	ci left: 5.772039e-02	ci right 5.815621e-02	k: 256086	n:4420000
KS ci ratio: 9.358043e-02	ci left: 3.782590e-04	ci right 4.156132e-04	k: 1753	n:4420000
FAM13A   4420000 perm   8837 sec   (500 perm/sec)   p_kst 3.966063e-04   p_cons 5.793801e-02   p_joint 2.319005e-04

Joint ci ratio: 1.223068e-01	ci left: 2.176476e-04	ci right 2.462177e-04	k: 1026	n:4430000
Cons ci ratio: 7.510416e-03	ci left: 5.771491e-02	ci right 5.815023e-02	k: 256640	n:4430000
KS ci ratio: 9.352714e-02	ci left: 3.778461e-04	ci right 4.151371e-04	k: 1755	n:4430000
FAM13A   4430000 perm   8875 sec   (499 perm/sec)   p_kst 3.961625e-04   p_cons 5.793228e-02   p_joint 2.316027e-04

Joint ci ratio: 1.221878e-01	ci left: 2.175941e-04	ci right 2.461274e-04	k: 1028	n:4440000
Cons ci ratio: 7.501820e-03	ci left: 5.771711e-02	ci right 5.815194e-02	k: 257228	n:4440000
KS ci ratio: 9.347395e-02	ci left: 3.774350e-04	ci right 4.146630e-04	k: 1757	n:4440000
FAM13A   4440000 perm   8913 sec   (498 perm/sec)   p_kst 3.957207e-04   p_cons 5.793423e-02   p_joint 2.315315e-04

Joint ci ratio: 1.221879e-01	ci left: 2.171051e-04	ci right 2.455743e-04	k: 1028	n:4450000
Cons ci ratio: 7.493283e-03	ci left: 5.771884e-02	ci right 5.815319e-02	k: 257814	n:4450000
KS ci ratio: 9.342084e-02	ci left: 3.770258e-04	ci right 4.141912e-04	k: 1759	n:4450000
FAM13A   4450000 perm   8951 sec   (497 perm/sec)   p_kst 3.952809e-04   p_cons 5.793573e-02   p_joint 2.310112e-04

Joint ci ratio: 1.220693e-01	ci left: 2.170531e-04	ci right 2.454858e-04	k: 1030	n:4460000
Cons ci ratio: 7.484438e-03	ci left: 5.772550e-02	ci right 5.815938e-02	k: 258422	n:4460000
KS ci ratio: 9.331486e-02	ci left: 3.770563e-04	ci right 4.141803e-04	k: 1763	n:4460000
FAM13A   4460000 perm   8990 sec   (496 perm/sec)   p_kst 3.952915e-04   p_cons 5.794215e-02   p_joint 2.309417e-04

Joint ci ratio: 1.219511e-01	ci left: 2.170013e-04	ci right 2.453977e-04	k: 1032	n:4470000
Cons ci ratio: 7.475884e-03	ci left: 5.772833e-02	ci right 5.816173e-02	k: 259013	n:4470000
KS ci ratio: 9.318288e-02	ci left: 3.773053e-04	ci right 4.143983e-04	k: 1768	n:4470000
FAM13A   4470000 perm   9028 sec   (495 perm/sec)   p_kst 3.955257e-04   p_cons 5.794474e-02   p_joint 2.308725e-04

Joint ci ratio: 1.218332e-01	ci left: 2.169497e-04	ci right 2.453100e-04	k: 1034	n:4480000
Cons ci ratio: 7.467176e-03	ci left: 5.773382e-02	ci right 5.816676e-02	k: 259616	n:4480000
KS ci ratio: 9.310398e-02	ci left: 3.771171e-04	ci right 4.141586e-04	k: 1771	n:4480000
FAM13A   4480000 perm   9065 sec   (494 perm/sec)   p_kst 3.953125e-04   p_cons 5.795000e-02   p_joint 2.308036e-04

Joint ci ratio: 1.217744e-01	ci left: 2.166825e-04	ci right 2.449931e-04	k: 1035	n:4490000
Cons ci ratio: 7.458894e-03	ci left: 5.773350e-02	ci right 5.816596e-02	k: 260193	n:4490000
KS ci ratio: 9.302528e-02	ci left: 3.769298e-04	ci right 4.139199e-04	k: 1774	n:4490000
FAM13A   4490000 perm   9104 sec   (493 perm/sec)   p_kst 3.951002e-04   p_cons 5.794944e-02   p_joint 2.305122e-04

Joint ci ratio: 1.216570e-01	ci left: 2.166319e-04	ci right 2.449066e-04	k: 1037	n:4500000
Cons ci ratio: 7.450412e-03	ci left: 5.773652e-02	ci right 5.816850e-02	k: 260785	n:4500000
KS ci ratio: 9.294678e-02	ci left: 3.767434e-04	ci right 4.136822e-04	k: 1777	n:4500000
FAM13A   4500000 perm   9141 sec   (492 perm/sec)   p_kst 3.948889e-04   p_cons 5.795222e-02   p_joint 2.304444e-04

Joint ci ratio: 1.214816e-01	ci left: 2.167965e-04	ci right 2.450490e-04	k: 1040	n:4510000
Cons ci ratio: 7.441672e-03	ci left: 5.774372e-02	ci right 5.817525e-02	k: 261396	n:4510000
KS ci ratio: 9.276432e-02	ci left: 3.774241e-04	ci right 4.143531e-04	k: 1784	n:4510000
FAM13A   4510000 perm   9180 sec   (491 perm/sec)   p_kst 3.955654e-04   p_cons 5.795920e-02   p_joint 2.305987e-04

Joint ci ratio: 1.212489e-01	ci left: 2.171749e-04	ci right 2.454187e-04	k: 1044	n:4520000
Cons ci ratio: 7.432842e-03	ci left: 5.775266e-02	ci right 5.818374e-02	k: 262015	n:4520000
KS ci ratio: 9.263466e-02	ci left: 3.776696e-04	ci right 4.145682e-04	k: 1789	n:4520000
FAM13A   4520000 perm   9219 sec   (490 perm/sec)   p_kst 3.957965e-04   p_cons 5.796792e-02   p_joint 2.309735e-04

Joint ci ratio: 1.211330e-01	ci left: 2.171236e-04	ci right 2.453318e-04	k: 1046	n:4530000
Cons ci ratio: 7.425019e-03	ci left: 5.774724e-02	ci right 5.817783e-02	k: 262569	n:4530000
KS ci ratio: 9.258297e-02	ci left: 3.772672e-04	ci right 4.141048e-04	k: 1791	n:4530000
FAM13A   4530000 perm   9258 sec   (489 perm/sec)   p_kst 3.953642e-04   p_cons 5.796225e-02   p_joint 2.309051e-04

Joint ci ratio: 1.209023e-01	ci left: 2.174998e-04	ci right 2.456991e-04	k: 1050	n:4540000
Cons ci ratio: 7.417041e-03	ci left: 5.774448e-02	ci right 5.817458e-02	k: 263135	n:4540000
KS ci ratio: 9.235130e-02	ci left: 3.783728e-04	ci right 4.152209e-04	k: 1800	n:4540000
FAM13A   4540000 perm   9298 sec   (488 perm/sec)   p_kst 3.964758e-04   p_cons 5.795925e-02   p_joint 2.312775e-04

Joint ci ratio: 1.207874e-01	ci left: 2.174480e-04	ci right 2.456120e-04	k: 1052	n:4550000
Cons ci ratio: 7.407971e-03	ci left: 5.775819e-02	ci right 5.818787e-02	k: 263776	n:4550000
KS ci ratio: 9.222336e-02	ci left: 3.786147e-04	ci right 4.154325e-04	k: 1805	n:4550000
FAM13A   4550000 perm   9336 sec   (487 perm/sec)   p_kst 3.967033e-04   p_cons 5.797275e-02   p_joint 2.312088e-04

Joint ci ratio: 1.207301e-01	ci left: 2.171838e-04	ci right 2.452993e-04	k: 1053	n:4560000
Cons ci ratio: 7.399661e-03	ci left: 5.776111e-02	ci right 5.819032e-02	k: 264368	n:4560000
KS ci ratio: 9.219787e-02	ci left: 3.779986e-04	ci right 4.147459e-04	k: 1806	n:4560000
FAM13A   4560000 perm   9376 sec   (486 perm/sec)   p_kst 3.960526e-04   p_cons 5.797544e-02   p_joint 2.309211e-04

Joint ci ratio: 1.203311e-01	ci left: 2.181942e-04	ci right 2.463404e-04	k: 1060	n:4570000
Cons ci ratio: 7.391957e-03	ci left: 5.775550e-02	ci right 5.818422e-02	k: 264921	n:4570000
KS ci ratio: 9.199441e-02	ci left: 3.788818e-04	ci right 4.156292e-04	k: 1814	n:4570000
FAM13A   4570000 perm   9416 sec   (485 perm/sec)   p_kst 3.969365e-04   p_cons 5.796958e-02   p_joint 2.319475e-04

Joint ci ratio: 1.200485e-01	ci left: 2.187766e-04	ci right 2.469270e-04	k: 1065	n:4580000
Cons ci ratio: 7.383096e-03	ci left: 5.776736e-02	ci right 5.819565e-02	k: 265554	n:4580000
KS ci ratio: 9.181749e-02	ci left: 3.795478e-04	ci right 4.162852e-04	k: 1821	n:4580000
FAM13A   4580000 perm   9455 sec   (484 perm/sec)   p_kst 3.975983e-04   p_cons 5.798122e-02   p_joint 2.325328e-04

Joint ci ratio: 1.198239e-01	ci left: 2.191453e-04	ci right 2.472867e-04	k: 1069	n:4590000
Cons ci ratio: 7.374826e-03	ci left: 5.777089e-02	ci right 5.819873e-02	k: 266149	n:4590000
KS ci ratio: 9.166666e-02	ci left: 3.799981e-04	ci right 4.167154e-04	k: 1827	n:4590000
FAM13A   4590000 perm   9494 sec   (483 perm/sec)   p_kst 3.980392e-04   p_cons 5.798453e-02   p_joint 2.328976e-04

Joint ci ratio: 1.195449e-01	ci left: 2.197233e-04	ci right 2.478686e-04	k: 1074	n:4600000
Cons ci ratio: 7.366906e-03	ci left: 5.776964e-02	ci right 5.819700e-02	k: 266722	n:4600000
KS ci ratio: 9.144179e-02	ci left: 3.810837e-04	ci right 4.178108e-04	k: 1836	n:4600000
FAM13A   4600000 perm   9533 sec   (483 perm/sec)   p_kst 3.991304e-04   p_cons 5.798304e-02   p_joint 2.334783e-04

Joint ci ratio: 1.194338e-01	ci left: 2.196676e-04	ci right 2.477777e-04	k: 1076	n:4610000
Cons ci ratio: 7.358456e-03	ci left: 5.777662e-02	ci right 5.820355e-02	k: 267333	n:4610000
KS ci ratio: 9.136722e-02	ci left: 3.808930e-04	ci right 4.175701e-04	k: 1839	n:4610000
FAM13A   4610000 perm   9572 sec   (482 perm/sec)   p_kst 3.989154e-04   p_cons 5.798980e-02   p_joint 2.334056e-04

Joint ci ratio: 1.192678e-01	ci left: 2.198221e-04	ci right 2.479101e-04	k: 1079	n:4620000
Cons ci ratio: 7.350676e-03	ci left: 5.777406e-02	ci right 5.820052e-02	k: 267900	n:4620000
KS ci ratio: 9.126807e-02	ci left: 3.809145e-04	ci right 4.175519e-04	k: 1843	n:4620000
FAM13A   4620000 perm   9612 sec   (481 perm/sec)   p_kst 3.989177e-04   p_cons 5.798701e-02   p_joint 2.335498e-04

Joint ci ratio: 1.191576e-01	ci left: 2.197664e-04	ci right 2.478195e-04	k: 1081	n:4630000
Cons ci ratio: 7.342891e-03	ci left: 5.777195e-02	ci right 5.819793e-02	k: 268469	n:4630000
KS ci ratio: 9.119393e-02	ci left: 3.807250e-04	ci right 4.173127e-04	k: 1846	n:4630000
FAM13A   4630000 perm   9651 sec   (480 perm/sec)   p_kst 3.987041e-04   p_cons 5.798467e-02   p_joint 2.334773e-04

Joint ci ratio: 1.190476e-01	ci left: 2.197109e-04	ci right 2.477293e-04	k: 1083	n:4640000
Cons ci ratio: 7.334827e-03	ci left: 5.777436e-02	ci right 5.819990e-02	k: 269059	n:4640000
KS ci ratio: 9.109534e-02	ci left: 3.807469e-04	ci right 4.172951e-04	k: 1850	n:4640000
FAM13A   4640000 perm   9691 sec   (479 perm/sec)   p_kst 3.987069e-04   p_cons 5.798685e-02   p_joint 2.334052e-04

Joint ci ratio: 1.189379e-01	ci left: 2.196558e-04	ci right 2.476394e-04	k: 1085	n:4650000
Cons ci ratio: 7.327078e-03	ci left: 5.777247e-02	ci right 5.819754e-02	k: 269629	n:4650000
KS ci ratio: 9.097255e-02	ci left: 3.809789e-04	ci right 4.174974e-04	k: 1855	n:4650000
FAM13A   4650000 perm   9730 sec   (478 perm/sec)   p_kst 3.989247e-04   p_cons 5.798473e-02   p_joint 2.333333e-04

Joint ci ratio: 1.186107e-01	ci left: 2.204337e-04	ci right 2.484338e-04	k: 1091	n:4660000
Cons ci ratio: 7.318650e-03	ci left: 5.778109e-02	ci right 5.820573e-02	k: 270248	n:4660000
KS ci ratio: 9.077708e-02	ci left: 3.818390e-04	ci right 4.183572e-04	k: 1863	n:4660000
FAM13A   4660000 perm   9769 sec   (477 perm/sec)   p_kst 3.997854e-04   p_cons 5.799313e-02   p_joint 2.341202e-04

Joint ci ratio: 1.184481e-01	ci left: 2.205850e-04	ci right 2.485632e-04	k: 1094	n:4670000
Cons ci ratio: 7.310250e-03	ci left: 5.778967e-02	ci right 5.821388e-02	k: 270867	n:4670000
KS ci ratio: 9.065556e-02	ci left: 3.820678e-04	ci right 4.185563e-04	k: 1868	n:4670000
FAM13A   4670000 perm   9809 sec   (476 perm/sec)   p_kst 4.000000e-04   p_cons 5.800150e-02   p_joint 2.342612e-04

Joint ci ratio: 1.183401e-01	ci left: 2.205284e-04	ci right 2.484721e-04	k: 1096	n:4680000
Cons ci ratio: 7.302422e-03	ci left: 5.779010e-02	ci right 5.821386e-02	k: 271448	n:4680000
KS ci ratio: 9.058290e-02	ci left: 3.818779e-04	ci right 4.183175e-04	k: 1871	n:4680000
FAM13A   4680000 perm   9848 sec   (475 perm/sec)   p_kst 3.997863e-04   p_cons 5.800171e-02   p_joint 2.341880e-04

Joint ci ratio: 1.181786e-01	ci left: 2.206789e-04	ci right 2.486009e-04	k: 1099	n:4690000
Cons ci ratio: 7.294092e-03	ci left: 5.779841e-02	ci right 5.822175e-02	k: 272066	n:4690000
KS ci ratio: 9.046216e-02	ci left: 3.821056e-04	ci right 4.185158e-04	k: 1876	n:4690000
FAM13A   4690000 perm   9888 sec   (474 perm/sec)   p_kst 4.000000e-04   p_cons 5.800981e-02   p_joint 2.343284e-04

Joint ci ratio: 1.181249e-01	ci left: 2.204159e-04	ci right 2.482910e-04	k: 1100	n:4700000
Cons ci ratio: 7.286727e-03	ci left: 5.779267e-02	ci right 5.821553e-02	k: 272618	n:4700000
KS ci ratio: 9.036593e-02	ci left: 3.821245e-04	ci right 4.184957e-04	k: 1880	n:4700000
FAM13A   4700000 perm   9927 sec   (473 perm/sec)   p_kst 4.000000e-04   p_cons 5.800383e-02   p_joint 2.340426e-04

Joint ci ratio: 1.179643e-01	ci left: 2.205660e-04	ci right 2.484196e-04	k: 1103	n:4710000
Cons ci ratio: 7.278846e-03	ci left: 5.779501e-02	ci right 5.821743e-02	k: 273208	n:4710000
KS ci ratio: 9.024605e-02	ci left: 3.823507e-04	ci right 4.186927e-04	k: 1885	n:4710000
FAM13A   4710000 perm   9967 sec   (473 perm/sec)   p_kst 4.002123e-04   p_cons 5.800594e-02   p_joint 2.341826e-04

Joint ci ratio: 1.179109e-01	ci left: 2.203043e-04	ci right 2.481114e-04	k: 1104	n:4720000
Cons ci ratio: 7.271217e-03	ci left: 5.779395e-02	ci right 5.821592e-02	k: 273782	n:4720000
KS ci ratio: 9.022216e-02	ci left: 3.817478e-04	ci right 4.180223e-04	k: 1886	n:4720000
FAM13A   4720000 perm   10006 sec   (472 perm/sec)   p_kst 3.995763e-04   p_cons 5.800466e-02   p_joint 2.338983e-04

Joint ci ratio: 1.178044e-01	ci left: 2.202489e-04	ci right 2.480221e-04	k: 1106	n:4730000
Cons ci ratio: 7.263471e-03	ci left: 5.779500e-02	ci right 5.821653e-02	k: 274366	n:4730000
KS ci ratio: 9.015054e-02	ci left: 3.815606e-04	ci right 4.177870e-04	k: 1889	n:4730000
FAM13A   4730000 perm   10046 sec   (471 perm/sec)   p_kst 3.993658e-04   p_cons 5.800550e-02   p_joint 2.338266e-04

Joint ci ratio: 1.176451e-01	ci left: 2.203986e-04	ci right 2.481504e-04	k: 1109	n:4740000
Cons ci ratio: 7.255820e-03	ci left: 5.779500e-02	ci right 5.821608e-02	k: 274945	n:4740000
KS ci ratio: 9.005529e-02	ci left: 3.815805e-04	ci right 4.177685e-04	k: 1893	n:4740000
FAM13A   4740000 perm   10086 sec   (470 perm/sec)   p_kst 3.993671e-04   p_cons 5.800527e-02   p_joint 2.339662e-04

Joint ci ratio: 1.175392e-01	ci left: 2.203432e-04	ci right 2.480614e-04	k: 1111	n:4750000
Cons ci ratio: 7.248640e-03	ci left: 5.778828e-02	ci right 5.820889e-02	k: 275492	n:4750000
KS ci ratio: 8.996035e-02	ci left: 3.816003e-04	ci right 4.177501e-04	k: 1897	n:4750000
FAM13A   4750000 perm   10127 sec   (469 perm/sec)   p_kst 3.993684e-04   p_cons 5.799832e-02   p_joint 2.338947e-04

Joint ci ratio: 1.174864e-01	ci left: 2.200842e-04	ci right 2.477566e-04	k: 1112	n:4760000
Cons ci ratio: 7.240827e-03	ci left: 5.779144e-02	ci right 5.821162e-02	k: 276086	n:4760000
KS ci ratio: 8.988935e-02	ci left: 3.814147e-04	ci right 4.175169e-04	k: 1900	n:4760000
FAM13A   4760000 perm   10167 sec   (468 perm/sec)   p_kst 3.991597e-04   p_cons 5.800126e-02   p_joint 2.336134e-04

Joint ci ratio: 1.173284e-01	ci left: 2.202333e-04	ci right 2.478845e-04	k: 1115	n:4770000
Cons ci ratio: 7.233108e-03	ci left: 5.779354e-02	ci right 5.821329e-02	k: 276675	n:4770000
KS ci ratio: 8.970076e-02	ci left: 3.822546e-04	ci right 4.183564e-04	k: 1908	n:4770000
FAM13A   4770000 perm   10207 sec   (467 perm/sec)   p_kst 4.000000e-04   p_cons 5.800314e-02   p_joint 2.337526e-04

Joint ci ratio: 1.173284e-01	ci left: 2.197726e-04	ci right 2.473660e-04	k: 1115	n:4780000
Cons ci ratio: 7.225898e-03	ci left: 5.778832e-02	ci right 5.820761e-02	k: 277229	n:4780000
KS ci ratio: 8.965383e-02	ci left: 3.818639e-04	ci right 4.179089e-04	k: 1910	n:4780000
FAM13A   4780000 perm   10248 sec   (466 perm/sec)   p_kst 3.995816e-04   p_cons 5.799770e-02   p_joint 2.332636e-04

Joint ci ratio: 1.172234e-01	ci left: 2.197190e-04	ci right 2.472793e-04	k: 1117	n:4790000
Cons ci ratio: 7.218503e-03	ci left: 5.778625e-02	ci right 5.820510e-02	k: 277798	n:4790000
KS ci ratio: 8.953676e-02	ci left: 3.820872e-04	ci right 4.181037e-04	k: 1915	n:4790000
FAM13A   4790000 perm   10289 sec   (466 perm/sec)   p_kst 3.997912e-04   p_cons 5.799541e-02   p_joint 2.331942e-04

Joint ci ratio: 1.170143e-01	ci left: 2.200702e-04	ci right 2.476219e-04	k: 1121	n:4800000
Cons ci ratio: 7.210512e-03	ci left: 5.779355e-02	ci right 5.821198e-02	k: 278412	n:4800000
KS ci ratio: 8.937362e-02	ci left: 3.827169e-04	ci right 4.187236e-04	k: 1922	n:4800000
FAM13A   4800000 perm   10329 sec   (465 perm/sec)   p_kst 4.004167e-04   p_cons 5.800250e-02   p_joint 2.335417e-04

Joint ci ratio: 1.169622e-01	ci left: 2.198145e-04	ci right 2.473211e-04	k: 1122	n:4810000
Cons ci ratio: 7.202890e-03	ci left: 5.779563e-02	ci right 5.821363e-02	k: 279001	n:4810000
KS ci ratio: 8.932720e-02	ci left: 3.823277e-04	ci right 4.182781e-04	k: 1924	n:4810000
FAM13A   4810000 perm   10370 sec   (464 perm/sec)   p_kst 4.000000e-04   p_cons 5.800437e-02   p_joint 2.332640e-04

Joint ci ratio: 1.169622e-01	ci left: 2.193585e-04	ci right 2.468080e-04	k: 1122	n:4820000
Cons ci ratio: 7.195565e-03	ci left: 5.779356e-02	ci right 5.821112e-02	k: 279570	n:4820000
KS ci ratio: 8.930404e-02	ci left: 3.817373e-04	ci right 4.176225e-04	k: 1925	n:4820000
FAM13A   4820000 perm   10411 sec   (463 perm/sec)   p_kst 3.993776e-04   p_cons 5.800207e-02   p_joint 2.327801e-04

Joint ci ratio: 1.168063e-01	ci left: 2.195073e-04	ci right 2.469362e-04	k: 1125	n:4830000
Cons ci ratio: 7.187609e-03	ci left: 5.780142e-02	ci right 5.821857e-02	k: 280187	n:4830000
KS ci ratio: 8.914216e-02	ci left: 3.823639e-04	ci right 4.182394e-04	k: 1932	n:4830000
FAM13A   4830000 perm   10452 sec   (462 perm/sec)   p_kst 4.000000e-04   p_cons 5.800973e-02   p_joint 2.329193e-04

Joint ci ratio: 1.164963e-01	ci left: 2.202572e-04	ci right 2.477019e-04	k: 1131	n:4840000
Cons ci ratio: 7.180181e-03	ci left: 5.780162e-02	ci right 5.821834e-02	k: 280767	n:4840000
KS ci ratio: 8.898117e-02	ci left: 3.829880e-04	ci right 4.188538e-04	k: 1939	n:4840000
FAM13A   4840000 perm   10492 sec   (461 perm/sec)   p_kst 4.006198e-04   p_cons 5.800971e-02   p_joint 2.336777e-04

Joint ci ratio: 1.164449e-01	ci left: 2.200033e-04	ci right 2.474033e-04	k: 1132	n:4850000
Cons ci ratio: 7.172654e-03	ci left: 5.780366e-02	ci right 5.821996e-02	k: 281356	n:4850000
KS ci ratio: 8.895827e-02	ci left: 3.823999e-04	ci right 4.182009e-04	k: 1940	n:4850000
FAM13A   4850000 perm   10533 sec   (460 perm/sec)   p_kst 4.000000e-04   p_cons 5.801155e-02   p_joint 2.334021e-04

Joint ci ratio: 1.163935e-01	ci left: 2.197504e-04	ci right 2.471060e-04	k: 1133	n:4860000
Cons ci ratio: 7.165286e-03	ci left: 5.780365e-02	ci right 5.821951e-02	k: 281935	n:4860000
KS ci ratio: 8.888961e-02	ci left: 3.822167e-04	ci right 4.179714e-04	k: 1943	n:4860000
FAM13A   4860000 perm   10574 sec   (460 perm/sec)   p_kst 3.997942e-04   p_cons 5.801132e-02   p_joint 2.331276e-04

Joint ci ratio: 1.162910e-01	ci left: 2.196978e-04	ci right 2.470212e-04	k: 1135	n:4870000
Cons ci ratio: 7.157793e-03	ci left: 5.780589e-02	ci right 5.822133e-02	k: 282525	n:4870000
KS ci ratio: 8.882111e-02	ci left: 3.820341e-04	ci right 4.177429e-04	k: 1946	n:4870000
FAM13A   4870000 perm   10616 sec   (459 perm/sec)   p_kst 3.995893e-04   p_cons 5.801335e-02   p_joint 2.330595e-04

Joint ci ratio: 1.160359e-01	ci left: 2.202425e-04	ci right 2.475694e-04	k: 1140	n:4880000
Cons ci ratio: 7.150752e-03	ci left: 5.780157e-02	ci right 5.821658e-02	k: 283083	n:4880000
KS ci ratio: 8.863916e-02	ci left: 3.828543e-04	ci right 4.185625e-04	k: 1954	n:4880000
FAM13A   4880000 perm   10657 sec   (458 perm/sec)   p_kst 4.004098e-04   p_cons 5.800881e-02   p_joint 2.336066e-04

Joint ci ratio: 1.158837e-01	ci left: 2.203878e-04	ci right 2.476944e-04	k: 1143	n:4890000
Cons ci ratio: 7.143438e-03	ci left: 5.780177e-02	ci right 5.821635e-02	k: 283663	n:4890000
KS ci ratio: 8.854862e-02	ci left: 3.828712e-04	ci right 4.185427e-04	k: 1958	n:4890000
FAM13A   4890000 perm   10698 sec   (457 perm/sec)   p_kst 4.004090e-04   p_cons 5.800879e-02   p_joint 2.337423e-04

Joint ci ratio: 1.156816e-01	ci left: 2.207307e-04	ci right 2.480288e-04	k: 1147	n:4900000
Cons ci ratio: 7.135987e-03	ci left: 5.780440e-02	ci right 5.821857e-02	k: 284255	n:4900000
KS ci ratio: 8.843582e-02	ci left: 3.830877e-04	ci right 4.187315e-04	k: 1963	n:4900000
FAM13A   4900000 perm   10739 sec   (456 perm/sec)   p_kst 4.006122e-04   p_cons 5.801122e-02   p_joint 2.340816e-04

Joint ci ratio: 1.156816e-01	ci left: 2.202811e-04	ci right 2.475237e-04	k: 1147	n:4910000
Cons ci ratio: 7.128678e-03	ci left: 5.780520e-02	ci right 5.821895e-02	k: 284838	n:4910000
KS ci ratio: 8.843586e-02	ci left: 3.823074e-04	ci right 4.178787e-04	k: 1963	n:4910000
FAM13A   4910000 perm   10781 sec   (455 perm/sec)   p_kst 3.997963e-04   p_cons 5.801181e-02   p_joint 2.336049e-04

Joint ci ratio: 1.155810e-01	ci left: 2.202282e-04	ci right 2.474389e-04	k: 1149	n:4920000
Cons ci ratio: 7.120862e-03	ci left: 5.781411e-02	ci right 5.822746e-02	k: 285461	n:4920000
KS ci ratio: 8.839088e-02	ci left: 3.819279e-04	ci right 4.174449e-04	k: 1965	n:4920000
FAM13A   4920000 perm   10823 sec   (455 perm/sec)   p_kst 3.993902e-04   p_cons 5.802053e-02   p_joint 2.335366e-04

Joint ci ratio: 1.154806e-01	ci left: 2.201754e-04	ci right 2.473543e-04	k: 1151	n:4930000
Cons ci ratio: 7.113705e-03	ci left: 5.781327e-02	ci right 5.822620e-02	k: 286036	n:4930000
KS ci ratio: 8.830110e-02	ci left: 3.819466e-04	ci right 4.174274e-04	k: 1969	n:4930000
FAM13A   4930000 perm   10864 sec   (454 perm/sec)   p_kst 3.993915e-04   p_cons 5.801947e-02   p_joint 2.334686e-04

Joint ci ratio: 1.152308e-01	ci left: 2.207127e-04	ci right 2.478950e-04	k: 1156	n:4940000
Cons ci ratio: 7.106780e-03	ci left: 5.780919e-02	ci right 5.822169e-02	k: 286595	n:4940000
KS ci ratio: 8.818925e-02	ci left: 3.821633e-04	ci right 4.176169e-04	k: 1974	n:4940000
FAM13A   4940000 perm   10906 sec   (453 perm/sec)   p_kst 3.995951e-04   p_cons 5.801518e-02   p_joint 2.340081e-04

Joint ci ratio: 1.150817e-01	ci left: 2.208554e-04	ci right 2.480177e-04	k: 1159	n:4950000
Cons ci ratio: 7.099823e-03	ci left: 5.780594e-02	ci right 5.821801e-02	k: 287158	n:4950000
KS ci ratio: 8.803335e-02	ci left: 3.827742e-04	ci right 4.182185e-04	k: 1981	n:4950000
FAM13A   4950000 perm   10948 sec   (452 perm/sec)   p_kst 4.002020e-04   p_cons 5.801172e-02   p_joint 2.341414e-04

Joint ci ratio: 1.148837e-01	ci left: 2.211934e-04	ci right 2.483473e-04	k: 1163	n:4960000
Cons ci ratio: 7.092834e-03	ci left: 5.780351e-02	ci right 5.821515e-02	k: 287725	n:4960000
KS ci ratio: 8.792251e-02	ci left: 3.829884e-04	ci right 4.184055e-04	k: 1986	n:4960000
FAM13A   4960000 perm   10990 sec   (451 perm/sec)   p_kst 4.004032e-04   p_cons 5.800907e-02   p_joint 2.344758e-04

Joint ci ratio: 1.148838e-01	ci left: 2.207483e-04	ci right 2.478476e-04	k: 1163	n:4970000
Cons ci ratio: 7.085096e-03	ci left: 5.781294e-02	ci right 5.822420e-02	k: 288351	n:4970000
KS ci ratio: 8.790042e-02	ci left: 3.824146e-04	ci right 4.177693e-04	k: 1987	n:4970000
FAM13A   4970000 perm   11032 sec   (451 perm/sec)   p_kst 3.997988e-04   p_cons 5.801831e-02   p_joint 2.340040e-04

Joint ci ratio: 1.147852e-01	ci left: 2.206951e-04	ci right 2.477630e-04	k: 1165	n:4980000
Cons ci ratio: 7.078410e-03	ci left: 5.780649e-02	ci right 5.821732e-02	k: 288898	n:4980000
KS ci ratio: 8.781212e-02	ci left: 3.824322e-04	ci right 4.177513e-04	k: 1991	n:4980000
FAM13A   4980000 perm   11074 sec   (450 perm/sec)   p_kst 3.997992e-04   p_cons 5.801165e-02   p_joint 2.339357e-04

Joint ci ratio: 1.146378e-01	ci left: 2.208368e-04	ci right 2.478850e-04	k: 1168	n:4990000
Cons ci ratio: 7.070979e-03	ci left: 5.781188e-02	ci right 5.822230e-02	k: 289504	n:4990000
KS ci ratio: 8.770212e-02	ci left: 3.826458e-04	ci right 4.179381e-04	k: 1996	n:4990000
FAM13A   4990000 perm   11115 sec   (449 perm/sec)   p_kst 4.000000e-04   p_cons 5.801683e-02   p_joint 2.340681e-04

Joint ci ratio: 1.144422e-01	ci left: 2.211722e-04	ci right 2.482121e-04	k: 1172	n:5000000
Cons ci ratio: 7.063997e-03	ci left: 5.781065e-02	ci right 5.822066e-02	k: 290077	n:5000000
KS ci ratio: 8.754878e-02	ci left: 3.832499e-04	ci right 4.185329e-04	k: 2003	n:5000000
FAM13A   5000000 perm   11157 sec   (448 perm/sec)   p_kst 4.006000e-04   p_cons 5.801540e-02   p_joint 2.344000e-04

Outputting figure to mutsig2_images.part000000000060/FAM13A.2_3201_5000000_0.0004006_0.058015_0.0002344.png
                gene_name: FAM13A
               theta_stop: 0.11 
                    nperm: 5000000 
                     p_ks: 0.00040 
        ci_ks_bounds_left: 0.00038 
       ci_ks_bounds_right: 0.00042 
                   p_cons: 0.058 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.00023 
     ci_joint_bounds_left: 0.00022 
    ci_joint_bounds_right: 0.00025 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000060
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 60 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1727>
Subject: Job 9877134: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1727>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000061> was used as the working directory.
Started at Fri Oct  5 22:39:00 2012
Results reported at Sat Oct  6 01:26:03 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000061.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000061.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 61  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000061.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   9962.89 sec.
    Max Memory :      2161 MB
    Max Swap   :      4814 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
61
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 61
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 61: processing genes 5441 - 5531
Calculating significance of each gene.
Using projection method.
In gene FAM169A the following bins exceed PROBCAP:
    PRAD-EJ-5496	categ 6	N = 2061    n = 1	mu =   1.66e-07
5441	FAM169A	4.881744e-02
5442	FAM169B	1
5443	FAM170A	3.133846e-02
5444	FAM171A1	1.243152e-02
5445	FAM171B	1.898131e-01
5446	FAM172A	1
5447	FAM173A	1
5448	FAM173B	1
5449	FAM174A	1
5450	FAM174B	1
5451	FAM175A	1
5452	FAM175B	1
5453	FAM176A	1
5454	FAM176B	1
5455	FAM177A1	1
5456	FAM177B	1
5457	FAM178A	1
5458	FAM179A	1
5459	FAM179B	1
5460	FAM180A	1
5461	FAM181A	1
5462	FAM181B	1
5463	FAM183A	1
5464	FAM184A	1
5465	FAM186B	1
5466	FAM187B	1
5467	FAM188A	1
5468	FAM188B	1
5469	FAM189A2	1
5470	FAM189B	8.987943e-02
5471	FAM18A	1
5472	FAM18B	1
5473	FAM18B2	1
5474	FAM190A	1
5475	FAM190B	1
5476	FAM192A	4.872669e-02
5477	FAM193A	1
5478	FAM193B	1
5479	FAM194A	1
5480	FAM195A	1
5481	FAM196A	1
5482	FAM198B	1
5483	FAM199X	1
5484	FAM19A1	1
5485	FAM19A2	1
5486	FAM19A3	1
5487	FAM19A4	1
5488	FAM19A5	1
5489	FAM20A	1
5490	FAM20B	1
5491	FAM21A	1
5492	FAM21B	5.449381e-02
5493	FAM21C	2.827515e-02
5494	FAM22A	1
5495	FAM22D	1
5496	FAM22F	1.438805e-01
5497	FAM22G	1
5498	FAM24A	1
5499	FAM24B	1
5500	FAM26D	1
5501	FAM26E	1
5502	FAM26F	1
5503	FAM32A	1
5504	FAM35A	1.838031e-01
5505	FAM36A	1
5506	FAM3A	1
5507	FAM3B	1
5508	FAM3C	1
5509	FAM3D	1
5510	FAM40A	1
5511	FAM40B	1
5512	FAM43A	1
5513	FAM43B	1
5514	FAM45A	1
5515	FAM46A	1
5516	FAM46B	1
5517	FAM46C	1
5518	FAM46D	1
5519	FAM47A	1
5520	FAM47B	1.926746e-01
5521	FAM47C	3.832307e-02
5522	FAM48A	1
5523	FAM48B1	1
5524	FAM48B2	1
5525	FAM49A	1
5526	FAM49B	1
5527	FAM50A	1
5528	FAM50B	1
5529	FAM53A	1
5530	FAM53B	1
5531	FAM53C	6.597994e-02
Done

Running MutSig 2:
Scatter job 61: processing genes 5441 - 5531
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
FAM171A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.705138e-02	ci left: 3.114560e-01	ci right 3.298486e-01	k: 3206	n:10000
Cons ci ratio: 6.271914e-02	ci left: 2.720070e-01	ci right 2.897208e-01	k: 2808	n:10000
KS ci ratio: 3.004477e-02	ci left: 6.203499e-01	ci right 6.393743e-01	k: 6299	n:10000
FAM171A1   10000 perm   2 sec   (6241 perm/sec)   p_kst 6.299000e-01   p_cons 2.808000e-01   p_joint 3.206000e-01

Outputting figure to mutsig2_images.part000000000061/FAM171A1.2_2705_10000_0.6299_0.2808_0.3206.png
                gene_name: FAM171A1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 33 percent done.
FAM21C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.599773e+00	ci left: 1.623679e-04	ci right 1.166444e-03	k: 5	n:10000
Cons ci ratio: 4.080238e-02	ci left: 4.700652e-01	ci right 4.897466e-01	k: 4799	n:10000
KS ci ratio: 2.262761e+00	ci left: 2.422185e-05	ci right 7.222801e-04	k: 2	n:10000
FAM21C   10000 perm   2 sec   (6097 perm/sec)   p_kst 2.000000e-04   p_cons 4.799000e-01   p_joint 5.000000e-04

Joint ci ratio: 1.752814e+00	ci left: 5.449587e-05	ci right 5.119995e-04	k: 4	n:20000
Cons ci ratio: 2.780255e-02	ci left: 4.914962e-01	ci right 5.054043e-01	k: 9969	n:20000
KS ci ratio: 1.959755e+00	ci left: 3.093467e-05	ci right 4.383005e-04	k: 3	n:20000
FAM21C   20000 perm   4 sec   (5479 perm/sec)   p_kst 1.500000e-04   p_cons 4.984500e-01   p_joint 2.000000e-04

Joint ci ratio: 1.752902e+00	ci left: 3.633000e-05	ci right 3.413508e-04	k: 4	n:30000
Cons ci ratio: 2.283407e-02	ci left: 4.898596e-01	ci right 5.012079e-01	k: 14866	n:30000
KS ci ratio: 1.481423e+00	ci left: 7.339990e-05	ci right 4.352646e-04	k: 6	n:30000
FAM21C   30000 perm   6 sec   (5223 perm/sec)   p_kst 2.000000e-04   p_cons 4.955333e-01   p_joint 1.333333e-04

Joint ci ratio: 4.821144e-01	ci left: 1.254358e-03	ci right 2.070734e-03	k: 65	n:40000
Cons ci ratio: 2.068568e-02	ci left: 4.681468e-01	ci right 4.779571e-01	k: 18922	n:40000
KS ci ratio: 1.181747e+00	ci left: 1.198910e-04	ci right 4.597107e-04	k: 10	n:40000
FAM21C   40000 perm   8 sec   (4851 perm/sec)   p_kst 2.500000e-04   p_cons 4.730500e-01   p_joint 1.625000e-03

Joint ci ratio: 4.273434e-01	ci left: 1.322391e-03	ci right 2.057410e-03	k: 83	n:50000
Cons ci ratio: 1.848158e-02	ci left: 4.692151e-01	ci right 4.779879e-01	k: 23680	n:50000
KS ci ratio: 1.181783e+00	ci left: 9.591181e-05	ci right 3.677763e-04	k: 10	n:50000
FAM21C   50000 perm   11 sec   (4754 perm/sec)   p_kst 2.000000e-04   p_cons 4.736000e-01   p_joint 1.660000e-03

Joint ci ratio: 7.038650e-01	ci left: 3.373725e-04	ci right 7.137048e-04	k: 30	n:60000
Cons ci ratio: 1.684772e-02	ci left: 4.702975e-01	ci right 4.783050e-01	k: 28458	n:60000
KS ci ratio: 1.087086e+00	ci left: 1.033471e-04	ci right 3.493337e-04	k: 12	n:60000
FAM21C   60000 perm   13 sec   (4687 perm/sec)   p_kst 2.000000e-04   p_cons 4.743000e-01   p_joint 5.000000e-04

Joint ci ratio: 4.494075e-01	ci left: 8.428369e-04	ci right 1.342863e-03	k: 75	n:70000
Cons ci ratio: 1.489781e-02	ci left: 4.935320e-01	ci right 5.009540e-01	k: 34807	n:70000
KS ci ratio: 1.012024e+00	ci left: 1.093460e-04	ci right 3.355433e-04	k: 14	n:70000
FAM21C   70000 perm   15 sec   (4614 perm/sec)   p_kst 2.000000e-04   p_cons 4.972429e-01   p_joint 1.071429e-03

Joint ci ratio: 4.300500e-01	ci left: 8.152934e-04	ci right 1.272138e-03	k: 82	n:80000
Cons ci ratio: 1.394697e-02	ci left: 4.933667e-01	ci right 5.003085e-01	k: 39747	n:80000
KS ci ratio: 9.506327e-01	ci left: 1.143215e-04	ci right 3.247672e-04	k: 16	n:80000
FAM21C   80000 perm   18 sec   (4547 perm/sec)   p_kst 2.000000e-04   p_cons 4.968375e-01   p_joint 1.025000e-03

Joint ci ratio: 7.039276e-01	ci left: 2.249095e-04	ci right 4.758201e-04	k: 30	n:90000
Cons ci ratio: 1.315765e-02	ci left: 4.932503e-01	ci right 4.997944e-01	k: 44687	n:90000
KS ci ratio: 8.553096e-01	ci left: 1.357442e-04	ci right 3.431834e-04	k: 20	n:90000
FAM21C   90000 perm   20 sec   (4447 perm/sec)   p_kst 2.222222e-04   p_cons 4.965222e-01   p_joint 3.333333e-04

Joint ci ratio: 6.721568e-01	ci left: 2.271674e-04	ci right 4.634118e-04	k: 33	n:100000
Cons ci ratio: 1.306709e-02	ci left: 4.705611e-01	ci right 4.767604e-01	k: 47366	n:100000
KS ci ratio: 7.686715e-01	ci left: 1.617931e-04	ci right 3.690273e-04	k: 25	n:100000
FAM21C   100000 perm   23 sec   (4384 perm/sec)   p_kst 2.500000e-04   p_cons 4.736600e-01   p_joint 3.300000e-04

Joint ci ratio: 6.532234e-01	ci left: 2.216350e-04	ci right 4.424864e-04	k: 35	n:110000
Cons ci ratio: 1.245505e-02	ci left: 4.708637e-01	ci right 4.767741e-01	k: 52120	n:110000
KS ci ratio: 7.543083e-01	ci left: 1.544062e-04	ci right 3.463084e-04	k: 26	n:110000
FAM21C   110000 perm   26 sec   (4298 perm/sec)   p_kst 2.363636e-04   p_cons 4.738182e-01   p_joint 3.181818e-04

Joint ci ratio: 6.047608e-01	ci left: 2.451967e-04	ci right 4.634812e-04	k: 41	n:120000
Cons ci ratio: 1.138896e-02	ci left: 4.939504e-01	ci right 4.996165e-01	k: 59614	n:120000
KS ci ratio: 7.278347e-01	ci left: 1.550537e-04	ci right 3.372141e-04	k: 28	n:120000
FAM21C   120000 perm   28 sec   (4243 perm/sec)   p_kst 2.333333e-04   p_cons 4.967833e-01   p_joint 3.416667e-04

Joint ci ratio: 5.842557e-01	ci left: 2.459371e-04	ci right 4.543425e-04	k: 44	n:130000
Cons ci ratio: 1.094248e-02	ci left: 4.940476e-01	ci right 4.994910e-01	k: 64580	n:130000
KS ci ratio: 6.928767e-01	ci left: 1.620286e-04	ci right 3.384602e-04	k: 31	n:130000
FAM21C   130000 perm   31 sec   (4186 perm/sec)   p_kst 2.384615e-04   p_cons 4.967692e-01   p_joint 3.384615e-04

Joint ci ratio: 4.437274e-01	ci left: 4.340750e-04	ci right 6.873584e-04	k: 77	n:140000
Cons ci ratio: 1.055464e-02	ci left: 4.936632e-01	ci right 4.989084e-01	k: 69480	n:140000
KS ci ratio: 6.443566e-01	ci left: 1.801060e-04	ci right 3.559765e-04	k: 36	n:140000
FAM21C   140000 perm   34 sec   (4123 perm/sec)   p_kst 2.571429e-04   p_cons 4.962857e-01   p_joint 5.500000e-04

Joint ci ratio: 4.020548e-01	ci left: 5.064392e-04	ci right 7.668275e-04	k: 94	n:150000
Cons ci ratio: 1.020137e-02	ci left: 4.935265e-01	ci right 4.985936e-01	k: 74409	n:150000
KS ci ratio: 6.197217e-01	ci left: 1.848917e-04	ci right 3.554116e-04	k: 39	n:150000
FAM21C   150000 perm   37 sec   (4065 perm/sec)   p_kst 2.600000e-04   p_cons 4.960600e-01   p_joint 6.266667e-04

Joint ci ratio: 3.899302e-01	ci left: 5.085530e-04	ci right 7.601161e-04	k: 100	n:160000
Cons ci ratio: 9.870106e-03	ci left: 4.939783e-01	ci right 4.988843e-01	k: 79429	n:160000
KS ci ratio: 6.047878e-01	ci left: 1.838955e-04	ci right 3.476162e-04	k: 41	n:160000
FAM21C   160000 perm   40 sec   (4011 perm/sec)   p_kst 2.562500e-04   p_cons 4.964312e-01   p_joint 6.250000e-04

Joint ci ratio: 3.753464e-01	ci left: 5.211723e-04	ci right 7.669654e-04	k: 108	n:170000
Cons ci ratio: 1.001595e-02	ci left: 4.715886e-01	ci right 4.763417e-01	k: 80574	n:170000
KS ci ratio: 5.842800e-01	ci left: 1.880677e-04	ci right 3.474431e-04	k: 44	n:170000
FAM21C   170000 perm   43 sec   (3958 perm/sec)   p_kst 2.588235e-04   p_cons 4.739647e-01   p_joint 6.352941e-04

Joint ci ratio: 3.702889e-01	ci left: 5.073226e-04	ci right 7.425790e-04	k: 111	n:180000
Cons ci ratio: 9.728837e-03	ci left: 4.719076e-01	ci right 4.765266e-01	k: 85359	n:180000
KS ci ratio: 5.717145e-01	ci left: 1.871047e-04	ci right 3.408608e-04	k: 46	n:180000
FAM21C   180000 perm   46 sec   (3893 perm/sec)   p_kst 2.555556e-04   p_cons 4.742167e-01   p_joint 6.166667e-04

Joint ci ratio: 3.842814e-01	ci left: 4.425048e-04	ci right 6.574224e-04	k: 103	n:190000
Cons ci ratio: 9.472175e-03	ci left: 4.718210e-01	ci right 4.763166e-01	k: 90073	n:190000
KS ci ratio: 5.488347e-01	ci left: 1.953270e-04	ci right 3.469263e-04	k: 50	n:190000
FAM21C   190000 perm   50 sec   (3838 perm/sec)   p_kst 2.631579e-04   p_cons 4.740684e-01   p_joint 5.421053e-04

Joint ci ratio: 3.824514e-01	ci left: 4.248968e-04	ci right 6.300324e-04	k: 104	n:200000
Cons ci ratio: 9.235086e-03	ci left: 4.717296e-01	ci right 4.761112e-01	k: 94784	n:200000
KS ci ratio: 5.102640e-01	ci left: 2.202163e-04	ci right 3.748763e-04	k: 58	n:200000
FAM21C   200000 perm   53 sec   (3785 perm/sec)   p_kst 2.900000e-04   p_cons 4.739200e-01   p_joint 5.200000e-04

Joint ci ratio: 3.719707e-01	ci left: 4.305268e-04	ci right 6.312982e-04	k: 110	n:210000
Cons ci ratio: 9.006606e-03	ci left: 4.721099e-01	ci right 4.763860e-01	k: 99592	n:210000
KS ci ratio: 4.788267e-01	ci left: 2.430766e-04	ci right 3.998314e-04	k: 66	n:210000
FAM21C   210000 perm   56 sec   (3730 perm/sec)   p_kst 3.142857e-04   p_cons 4.742476e-01   p_joint 5.238095e-04

Joint ci ratio: 3.592478e-01	ci left: 4.439819e-04	ci right 6.422911e-04	k: 118	n:220000
Cons ci ratio: 8.798127e-03	ci left: 4.722388e-01	ci right 4.764164e-01	k: 104352	n:220000
KS ci ratio: 4.651423e-01	ci left: 2.480465e-04	ci right 4.019867e-04	k: 70	n:220000
FAM21C   220000 perm   60 sec   (3683 perm/sec)   p_kst 3.181818e-04   p_cons 4.743273e-01   p_joint 5.363636e-04

Joint ci ratio: 4.354779e-01	ci left: 2.758138e-04	ci right 4.328813e-04	k: 80	n:230000
Cons ci ratio: 8.601761e-03	ci left: 4.724574e-01	ci right 4.765432e-01	k: 109135	n:230000
KS ci ratio: 4.525678e-01	ci left: 2.526426e-04	ci right 4.038974e-04	k: 74	n:230000
FAM21C   230000 perm   63 sec   (3638 perm/sec)   p_kst 3.217391e-04   p_cons 4.745000e-01   p_joint 3.478261e-04

Joint ci ratio: 4.328167e-01	ci left: 2.680325e-04	ci right 4.194645e-04	k: 81	n:240000
Cons ci ratio: 8.427622e-03	ci left: 4.720880e-01	ci right 4.760876e-01	k: 113781	n:240000
KS ci ratio: 4.466529e-01	ci left: 2.495052e-04	ci right 3.963398e-04	k: 76	n:240000
FAM21C   240000 perm   67 sec   (3593 perm/sec)   p_kst 3.166667e-04   p_cons 4.740875e-01   p_joint 3.375000e-04

Joint ci ratio: 4.302036e-01	ci left: 2.608764e-04	ci right 4.071184e-04	k: 82	n:250000
Cons ci ratio: 8.255886e-03	ci left: 4.722170e-01	ci right 4.761356e-01	k: 118544	n:250000
KS ci ratio: 4.381983e-01	ci left: 2.501879e-04	ci right 3.938150e-04	k: 79	n:250000
FAM21C   250000 perm   70 sec   (3550 perm/sec)   p_kst 3.160000e-04   p_cons 4.741760e-01   p_joint 3.280000e-04

Joint ci ratio: 4.251134e-01	ci left: 2.577067e-04	ci right 3.999758e-04	k: 84	n:260000
Cons ci ratio: 8.094176e-03	ci left: 4.723406e-01	ci right 4.761831e-01	k: 123308	n:260000
KS ci ratio: 4.302064e-01	ci left: 2.508424e-04	ci right 3.914606e-04	k: 82	n:260000
FAM21C   260000 perm   74 sec   (3495 perm/sec)   p_kst 3.153846e-04   p_cons 4.742615e-01   p_joint 3.230769e-04

Joint ci ratio: 4.178045e-01	ci left: 2.580946e-04	ci right 3.974450e-04	k: 87	n:270000
Cons ci ratio: 7.943557e-03	ci left: 4.723335e-01	ci right 4.761041e-01	k: 128039	n:270000
KS ci ratio: 4.178045e-01	ci left: 2.580946e-04	ci right 3.974450e-04	k: 87	n:270000
FAM21C   270000 perm   78 sec   (3452 perm/sec)   p_kst 3.222222e-04   p_cons 4.742185e-01   p_joint 3.222222e-04

Joint ci ratio: 4.131371e-01	ci left: 2.552729e-04	ci right 3.911362e-04	k: 89	n:280000
Cons ci ratio: 7.797469e-03	ci left: 4.725561e-01	ci right 4.762587e-01	k: 132834	n:280000
KS ci ratio: 4.131371e-01	ci left: 2.552729e-04	ci right 3.911362e-04	k: 89	n:280000
FAM21C   280000 perm   82 sec   (3405 perm/sec)   p_kst 3.178571e-04   p_cons 4.744071e-01   p_joint 3.178571e-04

Joint ci ratio: 4.042509e-01	ci left: 2.588455e-04	ci right 3.928523e-04	k: 93	n:290000
Cons ci ratio: 7.664400e-03	ci left: 4.724226e-01	ci right 4.760607e-01	k: 137530	n:290000
KS ci ratio: 4.042509e-01	ci left: 2.588455e-04	ci right 3.928523e-04	k: 93	n:290000
FAM21C   290000 perm   86 sec   (3366 perm/sec)   p_kst 3.206897e-04   p_cons 4.742414e-01   p_joint 3.206897e-04

Joint ci ratio: 3.979507e-01	ci left: 2.592085e-04	ci right 3.907609e-04	k: 96	n:300000
Cons ci ratio: 7.535247e-03	ci left: 4.724751e-01	ci right 4.760521e-01	k: 142279	n:300000
KS ci ratio: 3.939092e-01	ci left: 2.652115e-04	ci right 3.980878e-04	k: 98	n:300000
FAM21C   300000 perm   90 sec   (3328 perm/sec)   p_kst 3.266667e-04   p_cons 4.742633e-01   p_joint 3.200000e-04

Joint ci ratio: 3.959166e-01	ci left: 2.537505e-04	ci right 3.817023e-04	k: 97	n:310000
Cons ci ratio: 7.410205e-03	ci left: 4.726731e-01	ci right 4.761919e-01	k: 147074	n:310000
KS ci ratio: 3.919361e-01	ci left: 2.595632e-04	ci right 3.887896e-04	k: 99	n:310000
FAM21C   310000 perm   94 sec   (3287 perm/sec)   p_kst 3.193548e-04   p_cons 4.744323e-01   p_joint 3.129032e-04

Joint ci ratio: 3.880754e-01	ci left: 2.570889e-04	ci right 3.835000e-04	k: 101	n:320000
Cons ci ratio: 7.296352e-03	ci left: 4.725061e-01	ci right 4.759694e-01	k: 151756	n:320000
KS ci ratio: 3.824895e-01	ci left: 2.655560e-04	ci right 3.937784e-04	k: 104	n:320000
FAM21C   320000 perm   99 sec   (3248 perm/sec)   p_kst 3.250000e-04   p_cons 4.742375e-01   p_joint 3.156250e-04

Joint ci ratio: 3.806823e-01	ci left: 2.602483e-04	ci right 3.851656e-04	k: 105	n:330000
Cons ci ratio: 7.186889e-03	ci left: 4.723981e-01	ci right 4.758084e-01	k: 156454	n:330000
KS ci ratio: 3.703418e-01	ci left: 2.767149e-04	ci right 4.050547e-04	k: 111	n:330000
FAM21C   330000 perm   103 sec   (3212 perm/sec)   p_kst 3.363636e-04   p_cons 4.741030e-01   p_joint 3.181818e-04

Joint ci ratio: 3.806841e-01	ci left: 2.525938e-04	ci right 3.738376e-04	k: 105	n:340000
Cons ci ratio: 7.079578e-03	ci left: 4.724821e-01	ci right 4.758419e-01	k: 161215	n:340000
KS ci ratio: 3.703436e-01	ci left: 2.685760e-04	ci right 3.931417e-04	k: 111	n:340000
FAM21C   340000 perm   107 sec   (3177 perm/sec)   p_kst 3.264706e-04   p_cons 4.741618e-01   p_joint 3.088235e-04

Joint ci ratio: 3.754089e-01	ci left: 2.531338e-04	ci right 3.725387e-04	k: 108	n:350000
Cons ci ratio: 6.975815e-03	ci left: 4.726417e-01	ci right 4.759531e-01	k: 166004	n:350000
KS ci ratio: 3.623430e-01	ci left: 2.738733e-04	ci right 3.975039e-04	k: 116	n:350000
FAM21C   350000 perm   111 sec   (3143 perm/sec)   p_kst 3.314286e-04   p_cons 4.742971e-01   p_joint 3.085714e-04

Joint ci ratio: 3.720121e-01	ci left: 2.511360e-04	ci right 3.682655e-04	k: 110	n:360000
Cons ci ratio: 6.876829e-03	ci left: 4.727677e-01	ci right 4.760328e-01	k: 170784	n:360000
KS ci ratio: 3.563032e-01	ci left: 2.763739e-04	ci right 3.985720e-04	k: 120	n:360000
FAM21C   360000 perm   116 sec   (3105 perm/sec)   p_kst 3.333333e-04   p_cons 4.744000e-01   p_joint 3.055556e-04

Joint ci ratio: 3.563049e-01	ci left: 2.689042e-04	ci right 3.878001e-04	k: 120	n:370000
Cons ci ratio: 6.782197e-03	ci left: 4.728683e-01	ci right 4.760889e-01	k: 175557	n:370000
KS ci ratio: 3.450761e-01	ci left: 2.886223e-04	ci right 4.113174e-04	k: 128	n:370000
FAM21C   370000 perm   120 sec   (3072 perm/sec)   p_kst 3.459459e-04   p_cons 4.744784e-01   p_joint 3.243243e-04

Joint ci ratio: 3.533968e-01	ci left: 2.666217e-04	ci right 3.833254e-04	k: 122	n:380000
Cons ci ratio: 6.692038e-03	ci left: 4.729138e-01	ci right 4.760918e-01	k: 180311	n:380000
KS ci ratio: 3.437475e-01	ci left: 2.834308e-04	ci right 4.033518e-04	k: 129	n:380000
FAM21C   380000 perm   125 sec   (3042 perm/sec)   p_kst 3.394737e-04   p_cons 4.745026e-01   p_joint 3.210526e-04

Joint ci ratio: 3.519700e-01	ci left: 2.621221e-04	ci right 3.762871e-04	k: 123	n:390000
Cons ci ratio: 6.603718e-03	ci left: 4.730830e-01	ci right 4.762200e-01	k: 185114	n:390000
KS ci ratio: 3.398487e-01	ci left: 2.831954e-04	ci right 4.013596e-04	k: 132	n:390000
FAM21C   390000 perm   130 sec   (3011 perm/sec)   p_kst 3.384615e-04   p_cons 4.746513e-01   p_joint 3.153846e-04

Joint ci ratio: 3.491659e-01	ci left: 2.601287e-04	ci right 3.723185e-04	k: 125	n:400000
Cons ci ratio: 6.522693e-03	ci left: 4.729465e-01	ci right 4.760439e-01	k: 189798	n:400000
KS ci ratio: 3.373225e-01	ci left: 2.806904e-04	ci right 3.967492e-04	k: 134	n:400000
FAM21C   400000 perm   134 sec   (2980 perm/sec)   p_kst 3.350000e-04   p_cons 4.744950e-01   p_joint 3.125000e-04

Joint ci ratio: 3.437518e-01	ci left: 2.626915e-04	ci right 3.738392e-04	k: 129	n:410000
Cons ci ratio: 6.440892e-03	ci left: 4.731022e-01	ci right 4.761616e-01	k: 194599	n:410000
KS ci ratio: 3.300664e-01	ci left: 2.872527e-04	ci right 4.029278e-04	k: 140	n:410000
FAM21C   410000 perm   139 sec   (2951 perm/sec)   p_kst 3.414634e-04   p_cons 4.746317e-01   p_joint 3.146341e-04

Joint ci ratio: 3.373253e-01	ci left: 2.673239e-04	ci right 3.778570e-04	k: 134	n:420000
Cons ci ratio: 6.363307e-03	ci left: 4.731555e-01	ci right 4.761782e-01	k: 199360	n:420000
KS ci ratio: 3.266103e-01	ci left: 2.869675e-04	ci right 4.010639e-04	k: 143	n:420000
FAM21C   420000 perm   144 sec   (2920 perm/sec)   p_kst 3.404762e-04   p_cons 4.746667e-01   p_joint 3.190476e-04

Joint ci ratio: 3.336386e-01	ci left: 2.674961e-04	ci right 3.766319e-04	k: 137	n:430000
Cons ci ratio: 6.292244e-03	ci left: 4.729065e-01	ci right 4.758938e-01	k: 203992	n:430000
KS ci ratio: 3.243661e-01	ci left: 2.845650e-04	ci right 3.967668e-04	k: 145	n:430000
FAM21C   430000 perm   149 sec   (2885 perm/sec)   p_kst 3.372093e-04   p_cons 4.744000e-01   p_joint 3.186047e-04

Joint ci ratio: 3.254843e-01	ci left: 2.760100e-04	ci right 3.852923e-04	k: 144	n:440000
Cons ci ratio: 6.219480e-03	ci left: 4.729918e-01	ci right 4.759449e-01	k: 208766	n:440000
KS ci ratio: 3.200117e-01	ci left: 2.864534e-04	ci right 3.975729e-04	k: 149	n:440000
FAM21C   440000 perm   154 sec   (2855 perm/sec)   p_kst 3.386364e-04   p_cons 4.744682e-01   p_joint 3.272727e-04

Joint ci ratio: 3.210854e-01	ci left: 2.780441e-04	ci right 3.863379e-04	k: 148	n:450000
Cons ci ratio: 6.150582e-03	ci left: 4.729601e-01	ci right 4.758802e-01	k: 213489	n:450000
KS ci ratio: 3.168590e-01	ci left: 2.862217e-04	ci right 3.959357e-04	k: 152	n:450000
FAM21C   450000 perm   159 sec   (2826 perm/sec)   p_kst 3.377778e-04   p_cons 4.744200e-01   p_joint 3.288889e-04

Joint ci ratio: 2.567424e-01	ci left: 4.415457e-04	ci right 5.735740e-04	k: 232	n:460000
Cons ci ratio: 6.083525e-03	ci left: 4.729626e-01	ci right 4.758508e-01	k: 218227	n:460000
KS ci ratio: 3.148086e-01	ci left: 2.840026e-04	ci right 3.920198e-04	k: 154	n:460000
FAM21C   460000 perm   165 sec   (2796 perm/sec)   p_kst 3.347826e-04   p_cons 4.744065e-01   p_joint 5.043478e-04

Joint ci ratio: 2.556484e-01	ci left: 4.361330e-04	ci right 5.658985e-04	k: 234	n:470000
Cons ci ratio: 6.018743e-03	ci left: 4.729545e-01	ci right 4.758118e-01	k: 222960	n:470000
KS ci ratio: 3.098501e-01	ci left: 2.877647e-04	ci right 3.951482e-04	k: 159	n:470000
FAM21C   470000 perm   170 sec   (2768 perm/sec)   p_kst 3.382979e-04   p_cons 4.743830e-01   p_joint 4.978723e-04

Joint ci ratio: 2.540326e-01	ci left: 4.328976e-04	ci right 5.607574e-04	k: 237	n:480000
Cons ci ratio: 5.955217e-03	ci left: 4.730115e-01	ci right 4.758388e-01	k: 227724	n:480000
KS ci ratio: 3.088871e-01	ci left: 2.836911e-04	ci right 3.891607e-04	k: 160	n:480000
FAM21C   480000 perm   175 sec   (2742 perm/sec)   p_kst 3.333333e-04   p_cons 4.744250e-01   p_joint 4.937500e-04

Joint ci ratio: 2.514055e-01	ci left: 4.336209e-04	ci right 5.601624e-04	k: 242	n:490000
Cons ci ratio: 5.894794e-03	ci left: 4.729704e-01	ci right 4.757687e-01	k: 232441	n:490000
KS ci ratio: 3.051199e-01	ci left: 2.854361e-04	ci right 3.900087e-04	k: 164	n:490000
FAM21C   490000 perm   180 sec   (2717 perm/sec)   p_kst 3.346939e-04   p_cons 4.743694e-01   p_joint 4.938776e-04

Joint ci ratio: 2.589813e-01	ci left: 3.987379e-04	ci right 5.191739e-04	k: 228	n:500000
Cons ci ratio: 5.834465e-03	ci left: 4.730771e-01	ci right 4.758472e-01	k: 237231	n:500000
KS ci ratio: 3.032877e-01	ci left: 2.834220e-04	ci right 3.865130e-04	k: 166	n:500000
FAM21C   500000 perm   186 sec   (2692 perm/sec)   p_kst 3.320000e-04   p_cons 4.744620e-01   p_joint 4.560000e-04

Joint ci ratio: 2.785279e-01	ci left: 3.342234e-04	ci right 4.441317e-04	k: 197	n:510000
Cons ci ratio: 5.777563e-03	ci left: 4.730405e-01	ci right 4.757833e-01	k: 241950	n:510000
KS ci ratio: 2.979812e-01	ci left: 2.887423e-04	ci right 3.915835e-04	k: 172	n:510000
FAM21C   510000 perm   191 sec   (2668 perm/sec)   p_kst 3.372549e-04   p_cons 4.744118e-01   p_joint 3.862745e-04

Joint ci ratio: 2.764418e-01	ci left: 3.331638e-04	ci right 4.417604e-04	k: 200	n:520000
Cons ci ratio: 5.722935e-03	ci left: 4.729497e-01	ci right 4.756660e-01	k: 246640	n:520000
KS ci ratio: 2.971244e-01	ci left: 2.849691e-04	ci right 3.861194e-04	k: 173	n:520000
FAM21C   520000 perm   197 sec   (2643 perm/sec)   p_kst 3.326923e-04   p_cons 4.743077e-01   p_joint 3.846154e-04

Joint ci ratio: 2.744018e-01	ci left: 3.321472e-04	ci right 4.394757e-04	k: 203	n:530000
Cons ci ratio: 5.669312e-03	ci left: 4.729077e-01	ci right 4.755982e-01	k: 251354	n:530000
KS ci ratio: 2.954318e-01	ci left: 2.830854e-04	ci right 3.828874e-04	k: 175	n:530000
FAM21C   530000 perm   202 sec   (2621 perm/sec)   p_kst 3.301887e-04   p_cons 4.742528e-01   p_joint 3.830189e-04

Joint ci ratio: 2.962759e-01	ci left: 2.761285e-04	ci right 3.738083e-04	k: 174	n:540000
Cons ci ratio: 5.619234e-03	ci left: 4.726841e-01	ci right 4.753495e-01	k: 255969	n:540000
KS ci ratio: 2.921306e-01	ci left: 2.847047e-04	ci right 3.837486e-04	k: 179	n:540000
FAM21C   540000 perm   208 sec   (2597 perm/sec)   p_kst 3.314815e-04   p_cons 4.740167e-01   p_joint 3.222222e-04

Joint ci ratio: 2.792382e-01	ci left: 3.082246e-04	ci right 4.098872e-04	k: 196	n:550000
Cons ci ratio: 5.569807e-03	ci left: 4.725269e-01	ci right 4.751679e-01	k: 260616	n:550000
KS ci ratio: 2.905214e-01	ci left: 2.828989e-04	ci right 3.806727e-04	k: 181	n:550000
FAM21C   550000 perm   214 sec   (2572 perm/sec)   p_kst 3.290909e-04   p_cons 4.738473e-01   p_joint 3.563636e-04

Joint ci ratio: 2.737343e-01	ci left: 3.160162e-04	ci right 4.178410e-04	k: 204	n:560000
Cons ci ratio: 5.519625e-03	ci left: 4.725593e-01	ci right 4.751766e-01	k: 265366	n:560000
KS ci ratio: 2.866107e-01	ci left: 2.861296e-04	ci right 3.834479e-04	k: 186	n:560000
FAM21C   560000 perm   220 sec   (2550 perm/sec)   p_kst 3.321429e-04   p_cons 4.738679e-01   p_joint 3.642857e-04

Joint ci ratio: 2.724091e-01	ci left: 3.137406e-04	ci right 4.142590e-04	k: 206	n:570000
Cons ci ratio: 5.471488e-03	ci left: 4.725258e-01	ci right 4.751201e-01	k: 270079	n:570000
KS ci ratio: 2.835935e-01	ci left: 2.876257e-04	ci right 3.842387e-04	k: 190	n:570000
FAM21C   570000 perm   225 sec   (2528 perm/sec)   p_kst 3.333333e-04   p_cons 4.738228e-01   p_joint 3.614035e-04

Joint ci ratio: 2.704565e-01	ci left: 3.131517e-04	ci right 4.126402e-04	k: 209	n:580000
Cons ci ratio: 5.423632e-03	ci left: 4.725815e-01	ci right 4.751533e-01	k: 274843	n:580000
KS ci ratio: 2.813923e-01	ci left: 2.874726e-04	ci right 3.831517e-04	k: 193	n:580000
FAM21C   580000 perm   231 sec   (2506 perm/sec)   p_kst 3.327586e-04   p_cons 4.738672e-01   p_joint 3.603448e-04

Joint ci ratio: 2.054003e-01	ci left: 5.535991e-04	ci right 6.818954e-04	k: 363	n:590000
Cons ci ratio: 5.378929e-03	ci left: 4.724574e-01	ci right 4.750072e-01	k: 279502	n:590000
KS ci ratio: 2.792416e-01	ci left: 2.873275e-04	ci right 3.820989e-04	k: 196	n:590000
FAM21C   590000 perm   237 sec   (2485 perm/sec)   p_kst 3.322034e-04   p_cons 4.737322e-01   p_joint 6.152542e-04

Joint ci ratio: 2.045596e-01	ci left: 5.491157e-04	ci right 6.757869e-04	k: 366	n:600000
Cons ci ratio: 5.332585e-03	ci left: 4.725925e-01	ci right 4.751210e-01	k: 284314	n:600000
KS ci ratio: 2.778351e-01	ci left: 2.856392e-04	ci right 3.792962e-04	k: 198	n:600000
FAM21C   600000 perm   244 sec   (2463 perm/sec)   p_kst 3.300000e-04   p_cons 4.738567e-01   p_joint 6.100000e-04

Joint ci ratio: 2.034542e-01	ci left: 5.463361e-04	ci right 6.716005e-04	k: 370	n:610000
Cons ci ratio: 5.289749e-03	ci left: 4.725037e-01	ci right 4.750113e-01	k: 288992	n:610000
KS ci ratio: 2.778359e-01	ci left: 2.809565e-04	ci right 3.730784e-04	k: 198	n:610000
FAM21C   610000 perm   250 sec   (2440 perm/sec)   p_kst 3.245902e-04   p_cons 4.737574e-01   p_joint 6.065574e-04

Joint ci ratio: 2.085810e-01	ci left: 5.099884e-04	ci right 6.302419e-04	k: 352	n:620000
Cons ci ratio: 5.247265e-03	ci left: 4.724807e-01	ci right 4.749680e-01	k: 293709	n:620000
KS ci ratio: 2.771409e-01	ci left: 2.779256e-04	ci right 3.687859e-04	k: 199	n:620000
FAM21C   620000 perm   256 sec   (2418 perm/sec)   p_kst 3.209677e-04   p_cons 4.737242e-01   p_joint 5.677419e-04

Joint ci ratio: 2.077007e-01	ci left: 5.064070e-04	ci right 6.252480e-04	k: 355	n:630000
Cons ci ratio: 5.206270e-03	ci left: 4.724124e-01	ci right 4.748799e-01	k: 298397	n:630000
KS ci ratio: 2.757658e-01	ci left: 2.764686e-04	ci right 3.663263e-04	k: 201	n:630000
FAM21C   630000 perm   263 sec   (2398 perm/sec)   p_kst 3.190476e-04   p_cons 4.736460e-01   p_joint 5.634921e-04

Joint ci ratio: 2.435275e-01	ci left: 3.554393e-04	ci right 4.554238e-04	k: 258	n:640000
Cons ci ratio: 5.165751e-03	ci left: 4.723917e-01	ci right 4.748398e-01	k: 303114	n:640000
KS ci ratio: 2.744109e-01	ci left: 2.750582e-04	ci right 3.639425e-04	k: 203	n:640000
FAM21C   640000 perm   269 sec   (2377 perm/sec)   p_kst 3.171875e-04   p_cons 4.736156e-01   p_joint 4.031250e-04

Joint ci ratio: 2.584312e-01	ci left: 3.081582e-04	ci right 4.010054e-04	k: 229	n:650000
Cons ci ratio: 5.124598e-03	ci left: 4.725240e-01	ci right 4.749532e-01	k: 307930	n:650000
KS ci ratio: 2.724152e-01	ci left: 2.751256e-04	ci right 3.632744e-04	k: 206	n:650000
FAM21C   650000 perm   276 sec   (2356 perm/sec)   p_kst 3.169231e-04   p_cons 4.737385e-01   p_joint 3.523077e-04

Joint ci ratio: 2.573152e-01	ci left: 3.063236e-04	ci right 3.981554e-04	k: 231	n:660000
Cons ci ratio: 5.085092e-03	ci left: 4.725857e-01	ci right 4.749964e-01	k: 312702	n:660000
KS ci ratio: 2.711089e-01	ci left: 2.737808e-04	ci right 3.610066e-04	k: 208	n:660000
FAM21C   660000 perm   283 sec   (2335 perm/sec)   p_kst 3.151515e-04   p_cons 4.737909e-01   p_joint 3.500000e-04

Joint ci ratio: 2.567629e-01	ci left: 3.031479e-04	ci right 3.938013e-04	k: 232	n:670000
Cons ci ratio: 5.047000e-03	ci left: 4.725948e-01	ci right 4.749875e-01	k: 317440	n:670000
KS ci ratio: 2.704631e-01	ci left: 2.710857e-04	ci right 3.572121e-04	k: 209	n:670000
FAM21C   670000 perm   289 sec   (2318 perm/sec)   p_kst 3.119403e-04   p_cons 4.737910e-01   p_joint 3.462687e-04

Joint ci ratio: 2.545868e-01	ci left: 3.041953e-04	ci right 3.942686e-04	k: 236	n:680000
Cons ci ratio: 5.010594e-03	ci left: 4.725200e-01	ci right 4.748950e-01	k: 322121	n:680000
KS ci ratio: 2.698219e-01	ci left: 2.684701e-04	ci right 3.535290e-04	k: 210	n:680000
FAM21C   680000 perm   296 sec   (2299 perm/sec)   p_kst 3.088235e-04   p_cons 4.737074e-01   p_joint 3.470588e-04

Joint ci ratio: 2.519428e-01	ci left: 3.065732e-04	ci right 3.962598e-04	k: 241	n:690000
Cons ci ratio: 4.973749e-03	ci left: 4.725691e-01	ci right 4.749268e-01	k: 326886	n:690000
KS ci ratio: 2.666803e-01	ci left: 2.713384e-04	ci right 3.561379e-04	k: 215	n:690000
FAM21C   690000 perm   303 sec   (2281 perm/sec)   p_kst 3.115942e-04   p_cons 4.737478e-01   p_joint 3.492754e-04

Joint ci ratio: 2.498860e-01	ci left: 3.075485e-04	ci right 3.966718e-04	k: 245	n:700000
Cons ci ratio: 4.939870e-03	ci left: 4.723983e-01	ci right 4.747391e-01	k: 331498	n:700000
KS ci ratio: 2.666809e-01	ci left: 2.674620e-04	ci right 3.510503e-04	k: 215	n:700000
FAM21C   700000 perm   309 sec   (2262 perm/sec)   p_kst 3.071429e-04   p_cons 4.735686e-01   p_joint 3.500000e-04

Joint ci ratio: 2.498866e-01	ci left: 3.032168e-04	ci right 3.910850e-04	k: 245	n:710000
Cons ci ratio: 4.905758e-03	ci left: 4.723253e-01	ci right 4.746495e-01	k: 336176	n:710000
KS ci ratio: 2.660661e-01	ci left: 2.650093e-04	ci right 3.476083e-04	k: 216	n:710000
FAM21C   710000 perm   316 sec   (2244 perm/sec)   p_kst 3.042254e-04   p_cons 4.734873e-01   p_joint 3.450704e-04

Joint ci ratio: 2.468934e-01	ci left: 3.068202e-04	ci right 3.945042e-04	k: 251	n:720000
Cons ci ratio: 4.870159e-03	ci left: 4.724780e-01	ci right 4.747861e-01	k: 341015	n:720000
KS ci ratio: 2.648486e-01	ci left: 2.639215e-04	ci right 3.457426e-04	k: 218	n:720000
FAM21C   720000 perm   323 sec   (2228 perm/sec)   p_kst 3.027778e-04   p_cons 4.736319e-01   p_joint 3.486111e-04

Joint ci ratio: 2.459197e-01	ci left: 3.051877e-04	ci right 3.920086e-04	k: 253	n:730000
Cons ci ratio: 4.837395e-03	ci left: 4.724129e-01	ci right 4.747051e-01	k: 345698	n:730000
KS ci ratio: 2.636476e-01	ci left: 2.628644e-04	ci right 3.439273e-04	k: 220	n:730000
FAM21C   730000 perm   330 sec   (2211 perm/sec)   p_kst 3.013699e-04   p_cons 4.735589e-01   p_joint 3.465753e-04

Joint ci ratio: 2.435342e-01	ci left: 3.074060e-04	ci right 3.938814e-04	k: 258	n:740000
Cons ci ratio: 4.804815e-03	ci left: 4.723983e-01	ci right 4.746749e-01	k: 350417	n:740000
KS ci ratio: 2.612934e-01	ci left: 2.643620e-04	ci right 3.450398e-04	k: 224	n:740000
FAM21C   740000 perm   337 sec   (2195 perm/sec)   p_kst 3.027027e-04   p_cons 4.735365e-01   p_joint 3.486486e-04

Joint ci ratio: 2.430658e-01	ci left: 3.045592e-04	ci right 3.900442e-04	k: 259	n:750000
Cons ci ratio: 4.773242e-03	ci left: 4.723468e-01	ci right 4.746081e-01	k: 355108	n:750000
KS ci ratio: 2.601400e-01	ci left: 2.633296e-04	ci right 3.432798e-04	k: 226	n:750000
FAM21C   750000 perm   344 sec   (2178 perm/sec)   p_kst 3.013333e-04   p_cons 4.734773e-01   p_joint 3.453333e-04

Joint ci ratio: 2.421365e-01	ci left: 3.030235e-04	ci right 3.877033e-04	k: 261	n:760000
Cons ci ratio: 4.741269e-03	ci left: 4.724032e-01	ci right 4.746496e-01	k: 359880	n:760000
KS ci ratio: 2.578777e-01	ci left: 2.647862e-04	ci right 3.443671e-04	k: 230	n:760000
FAM21C   760000 perm   352 sec   (2160 perm/sec)   p_kst 3.026316e-04   p_cons 4.735263e-01   p_joint 3.434211e-04

Joint ci ratio: 2.403089e-01	ci left: 3.039690e-04	ci right 3.881764e-04	k: 265	n:770000
Cons ci ratio: 4.709501e-03	ci left: 4.725037e-01	ci right 4.747355e-01	k: 364687	n:770000
KS ci ratio: 2.573217e-01	ci left: 2.625623e-04	ci right 3.412772e-04	k: 231	n:770000
FAM21C   770000 perm   359 sec   (2143 perm/sec)   p_kst 3.000000e-04   p_cons 4.736195e-01   p_joint 3.441558e-04

Joint ci ratio: 2.389652e-01	ci left: 3.036871e-04	ci right 3.872764e-04	k: 268	n:780000
Cons ci ratio: 4.680060e-03	ci left: 4.724209e-01	ci right 4.746383e-01	k: 369353	n:780000
KS ci ratio: 2.573222e-01	ci left: 2.591960e-04	ci right 3.369019e-04	k: 231	n:780000
FAM21C   780000 perm   367 sec   (2128 perm/sec)   p_kst 2.961538e-04   p_cons 4.735295e-01   p_joint 3.435897e-04

Joint ci ratio: 2.562203e-01	ci left: 2.582838e-04	ci right 3.353316e-04	k: 233	n:790000
Cons ci ratio: 4.651293e-03	ci left: 4.723263e-01	ci right 4.745296e-01	k: 374008	n:790000
KS ci ratio: 2.545930e-01	ci left: 2.618382e-04	ci right 3.393715e-04	k: 236	n:790000
FAM21C   790000 perm   374 sec   (2112 perm/sec)   p_kst 2.987342e-04   p_cons 4.734278e-01   p_joint 2.949367e-04

Joint ci ratio: 2.556749e-01	ci left: 2.562250e-04	ci right 3.324700e-04	k: 234	n:800000
Cons ci ratio: 4.620188e-03	ci left: 4.725428e-01	ci right 4.747323e-01	k: 378910	n:800000
KS ci ratio: 2.529968e-01	ci left: 2.620767e-04	ci right 3.391174e-04	k: 239	n:800000
FAM21C   800000 perm   382 sec   (2096 perm/sec)   p_kst 2.987500e-04   p_cons 4.736375e-01   p_joint 2.925000e-04

Joint ci ratio: 2.535262e-01	ci left: 2.576849e-04	ci right 3.336181e-04	k: 238	n:810000
Cons ci ratio: 4.590765e-03	ci left: 4.726380e-01	ci right 4.748140e-01	k: 383718	n:810000
KS ci ratio: 2.509143e-01	ci left: 2.634677e-04	ci right 3.401802e-04	k: 243	n:810000
FAM21C   810000 perm   389 sec   (2081 perm/sec)   p_kst 3.000000e-04   p_cons 4.737259e-01   p_joint 2.938272e-04

Joint ci ratio: 2.519498e-01	ci left: 2.579693e-04	ci right 3.334394e-04	k: 241	n:820000
Cons ci ratio: 4.562065e-03	ci left: 4.727127e-01	ci right 4.748753e-01	k: 388511	n:820000
KS ci ratio: 2.498924e-01	ci left: 2.625407e-04	ci right 3.386234e-04	k: 245	n:820000
FAM21C   820000 perm   397 sec   (2066 perm/sec)   p_kst 2.987805e-04   p_cons 4.737939e-01   p_joint 2.939024e-04

Joint ci ratio: 2.562221e-01	ci left: 2.458361e-04	ci right 3.191713e-04	k: 233	n:830000
Cons ci ratio: 4.534696e-03	ci left: 4.726976e-01	ci right 4.748472e-01	k: 393231	n:830000
KS ci ratio: 2.478851e-01	ci left: 2.638962e-04	ci right 3.396629e-04	k: 249	n:830000
FAM21C   830000 perm   405 sec   (2052 perm/sec)   p_kst 3.000000e-04   p_cons 4.737723e-01   p_joint 2.807229e-04

Joint ci ratio: 2.545953e-01	ci left: 2.462524e-04	ci right 3.191712e-04	k: 236	n:840000
Cons ci ratio: 4.508385e-03	ci left: 4.726198e-01	ci right 4.747565e-01	k: 397898	n:840000
KS ci ratio: 2.454425e-01	ci left: 2.663391e-04	ci right 3.419388e-04	k: 254	n:840000
FAM21C   840000 perm   412 sec   (2038 perm/sec)   p_kst 3.023810e-04   p_cons 4.736881e-01   p_joint 2.809524e-04

Joint ci ratio: 2.529990e-01	ci left: 2.466602e-04	ci right 3.191697e-04	k: 239	n:850000
Cons ci ratio: 4.481880e-03	ci left: 4.726157e-01	ci right 4.747398e-01	k: 402626	n:850000
KS ci ratio: 2.440114e-01	ci left: 2.665187e-04	ci right 3.416614e-04	k: 257	n:850000
FAM21C   850000 perm   420 sec   (2024 perm/sec)   p_kst 3.023529e-04   p_cons 4.736776e-01   p_joint 2.811765e-04

Joint ci ratio: 2.524739e-01	ci left: 2.448812e-04	ci right 3.166948e-04	k: 240	n:860000
Cons ci ratio: 4.455661e-03	ci left: 4.726314e-01	ci right 4.747432e-01	k: 407371	n:860000
KS ci ratio: 2.440118e-01	ci left: 2.634196e-04	ci right 3.376886e-04	k: 257	n:860000
FAM21C   860000 perm   428 sec   (2011 perm/sec)   p_kst 2.988372e-04   p_cons 4.736872e-01   p_joint 2.790698e-04

Joint ci ratio: 2.514329e-01	ci left: 2.442201e-04	ci right 3.154983e-04	k: 242	n:870000
Cons ci ratio: 4.430459e-03	ci left: 4.725837e-01	ci right 4.746832e-01	k: 412061	n:870000
KS ci ratio: 2.416809e-01	ci left: 2.657893e-04	ci right 3.399033e-04	k: 262	n:870000
FAM21C   870000 perm   436 sec   (1997 perm/sec)   p_kst 3.011494e-04   p_cons 4.736333e-01   p_joint 2.781609e-04

Joint ci ratio: 2.504046e-01	ci left: 2.435747e-04	ci right 3.143285e-04	k: 244	n:880000
Cons ci ratio: 4.404013e-03	ci left: 4.727256e-01	ci right 4.748132e-01	k: 416917	n:880000
KS ci ratio: 2.398636e-01	ci left: 2.670402e-04	ci right 3.408599e-04	k: 266	n:880000
FAM21C   880000 perm   444 sec   (1983 perm/sec)   p_kst 3.022727e-04   p_cons 4.737693e-01   p_joint 2.772727e-04

Joint ci ratio: 2.488854e-01	ci left: 2.439978e-04	ci right 3.143779e-04	k: 247	n:890000
Cons ci ratio: 4.379287e-03	ci left: 4.727217e-01	ci right 4.747975e-01	k: 421646	n:890000
KS ci ratio: 2.394159e-01	ci left: 2.650959e-04	ci right 3.382209e-04	k: 267	n:890000
FAM21C   890000 perm   452 sec   (1968 perm/sec)   p_kst 3.000000e-04   p_cons 4.737596e-01   p_joint 2.775281e-04

Joint ci ratio: 2.478880e-01	ci left: 2.433706e-04	ci right 3.132451e-04	k: 249	n:900000
Cons ci ratio: 4.354080e-03	ci left: 4.728202e-01	ci right 4.748844e-01	k: 426467	n:900000
KS ci ratio: 2.380871e-01	ci left: 2.652843e-04	ci right 3.379953e-04	k: 270	n:900000
FAM21C   900000 perm   460 sec   (1955 perm/sec)   p_kst 3.000000e-04   p_cons 4.738522e-01   p_joint 2.766667e-04

Joint ci ratio: 2.473939e-01	ci left: 2.417269e-04	ci right 3.109699e-04	k: 250	n:910000
Cons ci ratio: 4.329514e-03	ci left: 4.728923e-01	ci right 4.749452e-01	k: 431266	n:910000
KS ci ratio: 2.372135e-01	ci left: 2.644360e-04	ci right 3.366095e-04	k: 272	n:910000
FAM21C   910000 perm   469 sec   (1942 perm/sec)   p_kst 2.989011e-04   p_cons 4.739187e-01   p_joint 2.747253e-04

Joint ci ratio: 2.440142e-01	ci left: 2.462398e-04	ci right 3.156659e-04	k: 257	n:920000
Cons ci ratio: 4.305527e-03	ci left: 4.729434e-01	ci right 4.749851e-01	k: 436047	n:920000
KS ci ratio: 2.354944e-01	ci left: 2.656521e-04	ci right 3.375555e-04	k: 276	n:920000
FAM21C   920000 perm   477 sec   (1929 perm/sec)   p_kst 3.000000e-04   p_cons 4.739641e-01   p_joint 2.793478e-04

Joint ci ratio: 2.421442e-01	ci left: 2.476312e-04	ci right 3.168341e-04	k: 261	n:930000
Cons ci ratio: 4.282674e-03	ci left: 4.729073e-01	ci right 4.749380e-01	k: 440748	n:930000
KS ci ratio: 2.338121e-01	ci left: 2.668439e-04	ci right 3.384793e-04	k: 280	n:930000
FAM21C   930000 perm   485 sec   (1916 perm/sec)   p_kst 3.010753e-04   p_cons 4.739226e-01   p_joint 2.806452e-04

Joint ci ratio: 2.416836e-01	ci left: 2.459962e-04	ci right 3.145918e-04	k: 262	n:940000
Cons ci ratio: 4.260125e-03	ci left: 4.728785e-01	ci right 4.748983e-01	k: 445455	n:940000
KS ci ratio: 2.329846e-01	ci left: 2.660084e-04	ci right 3.371303e-04	k: 282	n:940000
FAM21C   940000 perm   494 sec   (1903 perm/sec)   p_kst 3.000000e-04   p_cons 4.738883e-01   p_joint 2.787234e-04

Joint ci ratio: 2.407700e-01	ci left: 2.453847e-04	ci right 3.135126e-04	k: 264	n:950000
Cons ci ratio: 4.237062e-03	ci left: 4.729523e-01	ci right 4.749615e-01	k: 450259	n:950000
KS ci ratio: 2.325743e-01	ci left: 2.641995e-04	ci right 3.346955e-04	k: 283	n:950000
FAM21C   950000 perm   502 sec   (1891 perm/sec)   p_kst 2.978947e-04   p_cons 4.739568e-01   p_joint 2.778947e-04

Joint ci ratio: 2.385299e-01	ci left: 2.477243e-04	ci right 3.157672e-04	k: 269	n:960000
Cons ci ratio: 4.215126e-03	ci left: 4.729351e-01	ci right 4.749338e-01	k: 454977	n:960000
KS ci ratio: 2.309534e-01	ci left: 2.653722e-04	ci right 3.356173e-04	k: 287	n:960000
FAM21C   960000 perm   511 sec   (1878 perm/sec)   p_kst 2.989583e-04   p_cons 4.739344e-01   p_joint 2.802083e-04

Joint ci ratio: 2.380897e-01	ci left: 2.461398e-04	ci right 3.136043e-04	k: 270	n:970000
Cons ci ratio: 4.192981e-03	ci left: 4.729832e-01	ci right 4.749716e-01	k: 459758	n:970000
KS ci ratio: 2.285843e-01	ci left: 2.684660e-04	ci right 3.386982e-04	k: 293	n:970000
FAM21C   970000 perm   520 sec   (1865 perm/sec)   p_kst 3.020619e-04   p_cons 4.739773e-01   p_joint 2.783505e-04

Joint ci ratio: 2.367826e-01	ci left: 2.465073e-04	ci right 3.136473e-04	k: 273	n:980000
Cons ci ratio: 4.171814e-03	ci left: 4.729549e-01	ci right 4.749330e-01	k: 464465	n:980000
KS ci ratio: 2.270449e-01	ci left: 2.695753e-04	ci right 3.395562e-04	k: 297	n:980000
FAM21C   980000 perm   529 sec   (1853 perm/sec)   p_kst 3.030612e-04   p_cons 4.739439e-01   p_joint 2.785714e-04

Joint ci ratio: 2.354969e-01	ci left: 2.468683e-04	ci right 3.136883e-04	k: 276	n:990000
Cons ci ratio: 4.150265e-03	ci left: 4.730109e-01	ci right 4.749791e-01	k: 469255	n:990000
KS ci ratio: 2.255361e-01	ci left: 2.706637e-04	ci right 3.403954e-04	k: 301	n:990000
FAM21C   990000 perm   538 sec   (1841 perm/sec)   p_kst 3.040404e-04   p_cons 4.739949e-01   p_joint 2.787879e-04

Joint ci ratio: 2.350732e-01	ci left: 2.453407e-04	ci right 3.116103e-04	k: 277	n:1000000
Cons ci ratio: 4.129139e-03	ci left: 4.730549e-01	ci right 4.750132e-01	k: 474034	n:1000000
KS ci ratio: 2.244242e-01	ci left: 2.707880e-04	ci right 3.401602e-04	k: 304	n:1000000
FAM21C   1000000 perm   547 sec   (1829 perm/sec)   p_kst 3.040000e-04   p_cons 4.740340e-01   p_joint 2.770000e-04

Joint ci ratio: 2.342322e-01	ci left: 2.447754e-04	ci right 3.106215e-04	k: 279	n:1010000
Cons ci ratio: 4.108747e-03	ci left: 4.730476e-01	ci right 4.749962e-01	k: 478762	n:1010000
KS ci ratio: 2.236921e-01	ci left: 2.699760e-04	ci right 3.388835e-04	k: 306	n:1010000
FAM21C   1010000 perm   556 sec   (1816 perm/sec)   p_kst 3.029703e-04   p_cons 4.740218e-01   p_joint 2.762376e-04

Joint ci ratio: 2.334002e-01	ci left: 2.442215e-04	ci right 3.096516e-04	k: 281	n:1020000
Cons ci ratio: 4.088301e-03	ci left: 4.730835e-01	ci right 4.750225e-01	k: 483534	n:1020000
KS ci ratio: 2.229671e-01	ci left: 2.691803e-04	ci right 3.376314e-04	k: 308	n:1020000
FAM21C   1020000 perm   565 sec   (1804 perm/sec)   p_kst 3.019608e-04   p_cons 4.740529e-01   p_joint 2.754902e-04

Joint ci ratio: 2.317622e-01	ci left: 2.455077e-04	ci right 3.107547e-04	k: 285	n:1030000
Cons ci ratio: 4.068292e-03	ci left: 4.731023e-01	ci right 4.750319e-01	k: 488289	n:1030000
KS ci ratio: 2.215377e-01	ci left: 2.702342e-04	ci right 3.384527e-04	k: 312	n:1030000
FAM21C   1030000 perm   574 sec   (1793 perm/sec)   p_kst 3.029126e-04   p_cons 4.740670e-01   p_joint 2.766990e-04

Joint ci ratio: 2.297622e-01	ci left: 2.476768e-04	ci right 3.128517e-04	k: 290	n:1040000
Cons ci ratio: 4.048379e-03	ci left: 4.731447e-01	ci right 4.750650e-01	k: 493069	n:1040000
KS ci ratio: 2.197890e-01	ci left: 2.721778e-04	ci right 3.402713e-04	k: 317	n:1040000
FAM21C   1040000 perm   584 sec   (1781 perm/sec)   p_kst 3.048077e-04   p_cons 4.741048e-01   p_joint 2.788462e-04

Joint ci ratio: 2.285869e-01	ci left: 2.480111e-04	ci right 3.128931e-04	k: 293	n:1050000
Cons ci ratio: 4.028909e-03	ci left: 4.731674e-01	ci right 4.750785e-01	k: 497829	n:1050000
KS ci ratio: 2.187595e-01	ci left: 2.722859e-04	ci right 3.400445e-04	k: 320	n:1050000
FAM21C   1050000 perm   593 sec   (1769 perm/sec)   p_kst 3.047619e-04   p_cons 4.741229e-01   p_joint 2.790476e-04

Joint ci ratio: 2.262892e-01	ci left: 2.510094e-04	ci right 3.159235e-04	k: 299	n:1060000
Cons ci ratio: 4.009990e-03	ci left: 4.731556e-01	ci right 4.750577e-01	k: 502553	n:1060000
KS ci ratio: 2.174090e-01	ci left: 2.732846e-04	ci right 3.408159e-04	k: 324	n:1060000
FAM21C   1060000 perm   603 sec   (1758 perm/sec)   p_kst 3.056604e-04   p_cons 4.741066e-01   p_joint 2.820755e-04

Joint ci ratio: 2.255387e-01	ci left: 2.504269e-04	ci right 3.149457e-04	k: 301	n:1070000
Cons ci ratio: 3.991261e-03	ci left: 4.731535e-01	ci right 4.750466e-01	k: 507287	n:1070000
KS ci ratio: 2.170755e-01	ci left: 2.716143e-04	ci right 3.386161e-04	k: 325	n:1070000
FAM21C   1070000 perm   612 sec   (1747 perm/sec)   p_kst 3.037383e-04   p_cons 4.741000e-01   p_joint 2.813084e-04

Joint ci ratio: 2.240596e-01	ci left: 2.516033e-04	ci right 3.159414e-04	k: 305	n:1080000
Cons ci ratio: 3.972880e-03	ci left: 4.731403e-01	ci right 4.750247e-01	k: 512009	n:1080000
KS ci ratio: 2.160836e-01	ci left: 2.717264e-04	ci right 3.384089e-04	k: 328	n:1080000
FAM21C   1080000 perm   622 sec   (1736 perm/sec)   p_kst 3.037037e-04   p_cons 4.740824e-01   p_joint 2.824074e-04

Joint ci ratio: 2.233311e-01	ci left: 2.510270e-04	ci right 3.149804e-04	k: 307	n:1090000
Cons ci ratio: 3.954787e-03	ci left: 4.731228e-01	ci right 4.749985e-01	k: 516726	n:1090000
KS ci ratio: 2.154299e-01	ci left: 2.709692e-04	ci right 3.372381e-04	k: 330	n:1090000
FAM21C   1090000 perm   632 sec   (1725 perm/sec)   p_kst 3.027523e-04   p_cons 4.740606e-01   p_joint 2.816514e-04

Joint ci ratio: 2.229696e-01	ci left: 2.496032e-04	ci right 3.130768e-04	k: 308	n:1100000
Cons ci ratio: 3.937040e-03	ci left: 4.730929e-01	ci right 4.749600e-01	k: 521429	n:1100000
KS ci ratio: 2.147821e-01	ci left: 2.702261e-04	ci right 3.360883e-04	k: 332	n:1100000
FAM21C   1100000 perm   642 sec   (1714 perm/sec)   p_kst 3.018182e-04   p_cons 4.740264e-01   p_joint 2.800000e-04

Joint ci ratio: 2.222516e-01	ci left: 2.490559e-04	ci right 3.121584e-04	k: 310	n:1110000
Cons ci ratio: 3.918913e-03	ci left: 4.731419e-01	ci right 4.750006e-01	k: 526219	n:1110000
KS ci ratio: 2.141401e-01	ci left: 2.694966e-04	ci right 3.349590e-04	k: 334	n:1110000
FAM21C   1110000 perm   652 sec   (1703 perm/sec)   p_kst 3.009009e-04   p_cons 4.740712e-01   p_joint 2.792793e-04

Joint ci ratio: 2.211873e-01	ci left: 2.493620e-04	ci right 3.121984e-04	k: 313	n:1120000
Cons ci ratio: 3.900839e-03	ci left: 4.732150e-01	ci right 4.750654e-01	k: 531037	n:1120000
KS ci ratio: 2.135038e-01	ci left: 2.687805e-04	ci right 3.338495e-04	k: 336	n:1120000
FAM21C   1120000 perm   662 sec   (1692 perm/sec)   p_kst 3.000000e-04   p_cons 4.741402e-01   p_joint 2.794643e-04

Joint ci ratio: 2.194468e-01	ci left: 2.513359e-04	ci right 3.141041e-04	k: 318	n:1130000
Cons ci ratio: 3.883130e-03	ci left: 4.732719e-01	ci right 4.751141e-01	k: 535838	n:1130000
KS ci ratio: 2.110134e-01	ci left: 2.731053e-04	ci right 3.383504e-04	k: 344	n:1130000
FAM21C   1130000 perm   672 sec   (1682 perm/sec)   p_kst 3.044248e-04   p_cons 4.741929e-01   p_joint 2.814159e-04

Joint ci ratio: 2.187622e-01	ci left: 2.507893e-04	ci right 3.131993e-04	k: 320	n:1140000
Cons ci ratio: 3.866285e-03	ci left: 4.732471e-01	ci right 4.750811e-01	k: 540547	n:1140000
KS ci ratio: 2.095006e-01	ci left: 2.748647e-04	ci right 3.399989e-04	k: 349	n:1140000
FAM21C   1140000 perm   682 sec   (1672 perm/sec)   p_kst 3.061404e-04   p_cons 4.741640e-01   p_joint 2.807018e-04

Joint ci ratio: 2.184224e-01	ci left: 2.494305e-04	ci right 3.113929e-04	k: 321	n:1150000
Cons ci ratio: 3.849215e-03	ci left: 4.732801e-01	ci right 4.751062e-01	k: 545322	n:1150000
KS ci ratio: 2.089046e-01	ci left: 2.741226e-04	ci right 3.388725e-04	k: 351	n:1150000
FAM21C   1150000 perm   692 sec   (1662 perm/sec)   p_kst 3.052174e-04   p_cons 4.741930e-01   p_joint 2.791304e-04

Joint ci ratio: 2.180842e-01	ci left: 2.480951e-04	ci right 3.096177e-04	k: 322	n:1160000
Cons ci ratio: 3.832487e-03	ci left: 4.732970e-01	ci right 4.751152e-01	k: 550079	n:1160000
KS ci ratio: 2.083138e-01	ci left: 2.733935e-04	ci right 3.377653e-04	k: 353	n:1160000
FAM21C   1160000 perm   703 sec   (1651 perm/sec)   p_kst 3.043103e-04   p_cons 4.742060e-01   p_joint 2.775862e-04

Joint ci ratio: 2.160861e-01	ci left: 2.508241e-04	ci right 3.123779e-04	k: 328	n:1170000
Cons ci ratio: 3.815421e-03	ci left: 4.733863e-01	ci right 4.751967e-01	k: 554921	n:1170000
KS ci ratio: 2.071467e-01	ci left: 2.742978e-04	ci right 3.384748e-04	k: 357	n:1170000
FAM21C   1170000 perm   713 sec   (1642 perm/sec)   p_kst 3.051282e-04   p_cons 4.742915e-01   p_joint 2.803419e-04

Joint ci ratio: 1.972035e-01	ci left: 3.017433e-04	ci right 3.685460e-04	k: 394	n:1180000
Cons ci ratio: 3.799348e-03	ci left: 4.733733e-01	ci right 4.751760e-01	k: 559644	n:1180000
KS ci ratio: 2.062841e-01	ci left: 2.743840e-04	ci right 3.382802e-04	k: 360	n:1180000
FAM21C   1180000 perm   723 sec   (1632 perm/sec)   p_kst 3.050847e-04   p_cons 4.742746e-01   p_joint 3.338983e-04

Joint ci ratio: 1.969546e-01	ci left: 3.000064e-04	ci right 3.663308e-04	k: 395	n:1190000
Cons ci ratio: 3.783279e-03	ci left: 4.733865e-01	ci right 4.751817e-01	k: 564398	n:1190000
KS ci ratio: 2.059992e-01	ci left: 2.728752e-04	ci right 3.363212e-04	k: 361	n:1190000
FAM21C   1190000 perm   734 sec   (1622 perm/sec)   p_kst 3.033613e-04   p_cons 4.742840e-01   p_joint 3.319328e-04

Joint ci ratio: 1.962128e-01	ci left: 2.998833e-04	ci right 3.659009e-04	k: 398	n:1200000
Cons ci ratio: 3.767790e-03	ci left: 4.733496e-01	ci right 4.751372e-01	k: 569092	n:1200000
KS ci ratio: 2.048703e-01	ci left: 2.737631e-04	ci right 3.370230e-04	k: 365	n:1200000
FAM21C   1200000 perm   745 sec   (1611 perm/sec)   p_kst 3.041667e-04   p_cons 4.742433e-01   p_joint 3.316667e-04

Joint ci ratio: 1.957229e-01	ci left: 2.989767e-04	ci right 3.646109e-04	k: 400	n:1210000
Cons ci ratio: 3.751979e-03	ci left: 4.733810e-01	ci right 4.751613e-01	k: 573868	n:1210000
KS ci ratio: 2.045912e-01	ci left: 2.722847e-04	ci right 3.351065e-04	k: 366	n:1210000
FAM21C   1210000 perm   756 sec   (1601 perm/sec)   p_kst 3.024793e-04   p_cons 4.742711e-01   p_joint 3.305785e-04

Joint ci ratio: 1.947540e-01	ci left: 2.996446e-04	ci right 3.650610e-04	k: 404	n:1220000
Cons ci ratio: 3.736722e-03	ci left: 4.733644e-01	ci right 4.751373e-01	k: 578586	n:1220000
KS ci ratio: 2.034852e-01	ci left: 2.731640e-04	ci right 3.358057e-04	k: 370	n:1220000
FAM21C   1220000 perm   767 sec   (1591 perm/sec)   p_kst 3.032787e-04   p_cons 4.742508e-01   p_joint 3.311475e-04

Joint ci ratio: 1.937992e-01	ci left: 3.003023e-04	ci right 3.655030e-04	k: 408	n:1230000
Cons ci ratio: 3.721056e-03	ci left: 4.734278e-01	ci right 4.751935e-01	k: 583402	n:1230000
KS ci ratio: 2.018592e-01	ci left: 2.755737e-04	ci right 3.382008e-04	k: 376	n:1230000
FAM21C   1230000 perm   778 sec   (1582 perm/sec)   p_kst 3.056911e-04   p_cons 4.743106e-01   p_joint 3.317073e-04

Joint ci ratio: 1.928584e-01	ci left: 3.009502e-04	ci right 3.659371e-04	k: 412	n:1240000
Cons ci ratio: 3.706058e-03	ci left: 4.734264e-01	ci right 4.751850e-01	k: 588139	n:1240000
KS ci ratio: 2.010609e-01	ci left: 2.756487e-04	ci right 3.380146e-04	k: 379	n:1240000
FAM21C   1240000 perm   788 sec   (1573 perm/sec)   p_kst 3.056452e-04   p_cons 4.743056e-01   p_joint 3.322581e-04

Joint ci ratio: 1.914724e-01	ci left: 3.031117e-04	ci right 3.680403e-04	k: 418	n:1250000
Cons ci ratio: 3.691044e-03	ci left: 4.734515e-01	ci right 4.752030e-01	k: 592909	n:1250000
KS ci ratio: 1.994919e-01	ci left: 2.780028e-04	ci right 3.403508e-04	k: 385	n:1250000
FAM21C   1250000 perm   800 sec   (1563 perm/sec)   p_kst 3.080000e-04   p_cons 4.743272e-01   p_joint 3.344000e-04

Joint ci ratio: 1.907906e-01	ci left: 3.029731e-04	ci right 3.676140e-04	k: 421	n:1260000
Cons ci ratio: 3.676522e-03	ci left: 4.734341e-01	ci right 4.751787e-01	k: 597626	n:1260000
KS ci ratio: 1.987211e-01	ci left: 2.780587e-04	ci right 3.401491e-04	k: 388	n:1260000
FAM21C   1260000 perm   810 sec   (1555 perm/sec)   p_kst 3.079365e-04   p_cons 4.743063e-01   p_joint 3.341270e-04

Joint ci ratio: 1.901160e-01	ci left: 3.028370e-04	ci right 3.671942e-04	k: 424	n:1270000
Cons ci ratio: 3.661938e-03	ci left: 4.734485e-01	ci right 4.751862e-01	k: 602383	n:1270000
KS ci ratio: 1.974560e-01	ci left: 2.796111e-04	ci right 3.416028e-04	k: 393	n:1270000
FAM21C   1270000 perm   822 sec   (1546 perm/sec)   p_kst 3.094488e-04   p_cons 4.743173e-01   p_joint 3.338583e-04

Joint ci ratio: 1.885692e-01	ci left: 3.056807e-04	ci right 3.700531e-04	k: 431	n:1280000
Cons ci ratio: 3.647784e-03	ci left: 4.734276e-01	ci right 4.751585e-01	k: 607095	n:1280000
KS ci ratio: 1.969569e-01	ci left: 2.789119e-04	ci right 3.405736e-04	k: 395	n:1280000
FAM21C   1280000 perm   833 sec   (1537 perm/sec)   p_kst 3.085938e-04   p_cons 4.742930e-01   p_joint 3.367187e-04

Joint ci ratio: 1.879178e-01	ci left: 3.055271e-04	ci right 3.696195e-04	k: 434	n:1290000
Cons ci ratio: 3.633736e-03	ci left: 4.734147e-01	ci right 4.751389e-01	k: 611817	n:1290000
KS ci ratio: 1.964615e-01	ci left: 2.782238e-04	ci right 3.395601e-04	k: 397	n:1290000
FAM21C   1290000 perm   844 sec   (1529 perm/sec)   p_kst 3.077519e-04   p_cons 4.742767e-01   p_joint 3.364341e-04

Joint ci ratio: 1.872732e-01	ci left: 3.053762e-04	ci right 3.691922e-04	k: 437	n:1300000
Cons ci ratio: 3.620072e-03	ci left: 4.733713e-01	ci right 4.750888e-01	k: 616499	n:1300000
KS ci ratio: 1.957252e-01	ci left: 2.782781e-04	ci right 3.393690e-04	k: 400	n:1300000
FAM21C   1300000 perm   855 sec   (1520 perm/sec)   p_kst 3.076923e-04   p_cons 4.742300e-01   p_joint 3.361538e-04

Joint ci ratio: 1.862133e-01	ci left: 3.066834e-04	ci right 3.703689e-04	k: 442	n:1310000
Cons ci ratio: 3.605988e-03	ci left: 4.734080e-01	ci right 4.751189e-01	k: 621285	n:1310000
KS ci ratio: 1.945161e-01	ci left: 2.797842e-04	ci right 3.407814e-04	k: 405	n:1310000
FAM21C   1310000 perm   867 sec   (1512 perm/sec)   p_kst 3.091603e-04   p_cons 4.742634e-01   p_joint 3.374046e-04

Joint ci ratio: 1.862135e-01	ci left: 3.043600e-04	ci right 3.675632e-04	k: 442	n:1320000
Cons ci ratio: 3.592710e-03	ci left: 4.733547e-01	ci right 4.750591e-01	k: 625953	n:1320000
KS ci ratio: 1.945163e-01	ci left: 2.776646e-04	ci right 3.381997e-04	k: 405	n:1320000
FAM21C   1320000 perm   878 sec   (1503 perm/sec)   p_kst 3.068182e-04   p_cons 4.742068e-01   p_joint 3.348485e-04

Joint ci ratio: 1.849649e-01	ci left: 3.063734e-04	ci right 3.695201e-04	k: 448	n:1330000
Cons ci ratio: 3.579459e-03	ci left: 4.733187e-01	ci right 4.750167e-01	k: 630643	n:1330000
KS ci ratio: 1.933294e-01	ci left: 2.791538e-04	ci right 3.395985e-04	k: 410	n:1330000
FAM21C   1330000 perm   890 sec   (1494 perm/sec)   p_kst 3.082707e-04   p_cons 4.741677e-01   p_joint 3.368421e-04

Joint ci ratio: 1.940393e-01	ci left: 2.749402e-04	ci right 3.347171e-04	k: 407	n:1340000
Cons ci ratio: 3.566130e-03	ci left: 4.733147e-01	ci right 4.750063e-01	k: 635375	n:1340000
KS ci ratio: 1.928608e-01	ci left: 2.784909e-04	ci right 3.386288e-04	k: 412	n:1340000
FAM21C   1340000 perm   902 sec   (1485 perm/sec)   p_kst 3.074627e-04   p_cons 4.741604e-01   p_joint 3.037313e-04

Joint ci ratio: 1.935655e-01	ci left: 2.743132e-04	ci right 3.337910e-04	k: 409	n:1350000
Cons ci ratio: 3.552489e-03	ci left: 4.733752e-01	ci right 4.750605e-01	k: 640194	n:1350000
KS ci ratio: 1.917037e-01	ci left: 2.799534e-04	ci right 3.400022e-04	k: 417	n:1350000
FAM21C   1350000 perm   914 sec   (1477 perm/sec)   p_kst 3.088889e-04   p_cons 4.742178e-01   p_joint 3.029630e-04

Joint ci ratio: 1.921643e-01	ci left: 2.764950e-04	ci right 3.359611e-04	k: 415	n:1360000
Cons ci ratio: 3.539285e-03	ci left: 4.733950e-01	ci right 4.750742e-01	k: 644959	n:1360000
KS ci ratio: 1.907929e-01	ci left: 2.806953e-04	ci right 3.405840e-04	k: 421	n:1360000
FAM21C   1360000 perm   925 sec   (1470 perm/sec)   p_kst 3.095588e-04   p_cons 4.742346e-01   p_joint 3.051471e-04

Joint ci ratio: 1.912470e-01	ci left: 2.772564e-04	ci right 3.365685e-04	k: 419	n:1370000
Cons ci ratio: 3.526563e-03	ci left: 4.733672e-01	ci right 4.750402e-01	k: 649659	n:1370000
KS ci ratio: 1.898950e-01	ci left: 2.814270e-04	ci right 3.411567e-04	k: 425	n:1370000
FAM21C   1370000 perm   937 sec   (1462 perm/sec)   p_kst 3.102190e-04   p_cons 4.742036e-01   p_joint 3.058394e-04

Joint ci ratio: 1.905676e-01	ci left: 2.773173e-04	ci right 3.364073e-04	k: 422	n:1380000
Cons ci ratio: 3.513941e-03	ci left: 4.733449e-01	ci right 4.750118e-01	k: 654366	n:1380000
KS ci ratio: 1.892299e-01	ci left: 2.814585e-04	ci right 3.409615e-04	k: 428	n:1380000
FAM21C   1380000 perm   949 sec   (1454 perm/sec)   p_kst 3.101449e-04   p_cons 4.741783e-01   p_joint 3.057971e-04

Joint ci ratio: 1.903429e-01	ci left: 2.760073e-04	ci right 3.347408e-04	k: 423	n:1390000
Cons ci ratio: 3.501151e-03	ci left: 4.733660e-01	ci right 4.750269e-01	k: 659133	n:1390000
KS ci ratio: 1.890099e-01	ci left: 2.801189e-04	ci right 3.392620e-04	k: 429	n:1390000
FAM21C   1390000 perm   961 sec   (1446 perm/sec)   p_kst 3.086331e-04   p_cons 4.741964e-01   p_joint 3.043165e-04

Joint ci ratio: 1.898957e-01	ci left: 2.753964e-04	ci right 3.338463e-04	k: 425	n:1400000
Cons ci ratio: 3.488169e-03	ci left: 4.734340e-01	ci right 4.750890e-01	k: 663966	n:1400000
KS ci ratio: 1.885719e-01	ci left: 2.794791e-04	ci right 3.383347e-04	k: 431	n:1400000
FAM21C   1400000 perm   973 sec   (1439 perm/sec)   p_kst 3.078571e-04   p_cons 4.742614e-01   p_joint 3.035714e-04

Joint ci ratio: 1.894515e-01	ci left: 2.747943e-04	ci right 3.329643e-04	k: 427	n:1410000
Cons ci ratio: 3.475153e-03	ci left: 4.735266e-01	ci right 4.751757e-01	k: 668835	n:1410000
KS ci ratio: 1.879206e-01	ci left: 2.795244e-04	ci right 3.381630e-04	k: 434	n:1410000
FAM21C   1410000 perm   985 sec   (1431 perm/sec)   p_kst 3.078014e-04   p_cons 4.743511e-01   p_joint 3.028369e-04

Joint ci ratio: 1.885723e-01	ci left: 2.755427e-04	ci right 3.335695e-04	k: 431	n:1420000
Cons ci ratio: 3.463362e-03	ci left: 4.734622e-01	ci right 4.751055e-01	k: 673483	n:1420000
KS ci ratio: 1.872759e-01	ci left: 2.795694e-04	ci right 3.379933e-04	k: 437	n:1420000
FAM21C   1420000 perm   998 sec   (1423 perm/sec)   p_kst 3.077465e-04   p_cons 4.742838e-01   p_joint 3.035211e-04

Joint ci ratio: 1.705645e-01	ci left: 3.377398e-04	ci right 4.013753e-04	k: 527	n:1430000
Cons ci ratio: 3.451526e-03	ci left: 4.734225e-01	ci right 4.750601e-01	k: 678165	n:1430000
KS ci ratio: 1.855884e-01	ci left: 2.829477e-04	ci right 3.414849e-04	k: 445	n:1430000
FAM21C   1430000 perm   1010 sec   (1416 perm/sec)   p_kst 3.111888e-04   p_cons 4.742413e-01   p_joint 3.685315e-04

Joint ci ratio: 1.702425e-01	ci left: 3.367240e-04	ci right 4.000360e-04	k: 529	n:1440000
Cons ci ratio: 3.439681e-03	ci left: 4.734022e-01	ci right 4.750340e-01	k: 682874	n:1440000
KS ci ratio: 1.851737e-01	ci left: 2.823072e-04	ci right 3.405667e-04	k: 447	n:1440000
FAM21C   1440000 perm   1023 sec   (1408 perm/sec)   p_kst 3.104167e-04   p_cons 4.742181e-01   p_joint 3.673611e-04

Joint ci ratio: 1.694451e-01	ci left: 3.377035e-04	ci right 4.008719e-04	k: 534	n:1450000
Cons ci ratio: 3.427340e-03	ci left: 4.734718e-01	ci right 4.750980e-01	k: 687713	n:1450000
KS ci ratio: 1.839458e-01	ci left: 2.843071e-04	ci right 3.425469e-04	k: 453	n:1450000
FAM21C   1450000 perm   1035 sec   (1401 perm/sec)   p_kst 3.124138e-04   p_cons 4.742848e-01   p_joint 3.682759e-04

Joint ci ratio: 1.689720e-01	ci left: 3.373582e-04	ci right 4.002679e-04	k: 537	n:1460000
Cons ci ratio: 3.416051e-03	ci left: 4.734062e-01	ci right 4.750268e-01	k: 692356	n:1460000
KS ci ratio: 1.831408e-01	ci left: 2.849736e-04	ci right 3.430661e-04	k: 457	n:1460000
FAM21C   1460000 perm   1047 sec   (1394 perm/sec)   p_kst 3.130137e-04   p_cons 4.742164e-01   p_joint 3.678082e-04

Joint ci ratio: 1.688153e-01	ci left: 3.357148e-04	ci right 3.982540e-04	k: 538	n:1470000
Cons ci ratio: 3.404079e-03	ci left: 4.734578e-01	ci right 4.750729e-01	k: 697170	n:1470000
KS ci ratio: 1.829413e-01	ci left: 2.836841e-04	ci right 3.414437e-04	k: 458	n:1470000
FAM21C   1470000 perm   1060 sec   (1387 perm/sec)   p_kst 3.115646e-04   p_cons 4.742653e-01   p_joint 3.659864e-04

Joint ci ratio: 1.681924e-01	ci left: 3.360352e-04	ci right 3.983797e-04	k: 542	n:1480000
Cons ci ratio: 3.392433e-03	ci left: 4.734790e-01	ci right 4.750886e-01	k: 701940	n:1480000
KS ci ratio: 1.821493e-01	ci left: 2.843465e-04	ci right 3.419628e-04	k: 462	n:1480000
FAM21C   1480000 perm   1073 sec   (1379 perm/sec)   p_kst 3.121622e-04   p_cons 4.742838e-01   p_joint 3.662162e-04

Joint ci ratio: 1.674232e-01	ci left: 3.369947e-04	ci right 3.992025e-04	k: 547	n:1490000
Cons ci ratio: 3.380802e-03	ci left: 4.735154e-01	ci right 4.751196e-01	k: 706733	n:1490000
KS ci ratio: 1.815620e-01	ci left: 2.843599e-04	ci right 3.417727e-04	k: 465	n:1490000
FAM21C   1490000 perm   1086 sec   (1372 perm/sec)   p_kst 3.120805e-04   p_cons 4.743174e-01   p_joint 3.671141e-04

Joint ci ratio: 1.668155e-01	ci left: 3.373032e-04	ci right 3.993192e-04	k: 551	n:1500000
Cons ci ratio: 3.369613e-03	ci left: 4.735033e-01	ci right 4.751021e-01	k: 711454	n:1500000
KS ci ratio: 1.813677e-01	ci left: 2.831006e-04	ci right 3.401911e-04	k: 466	n:1500000
FAM21C   1500000 perm   1098 sec   (1366 perm/sec)   p_kst 3.106667e-04   p_cons 4.743027e-01   p_joint 3.673333e-04

Joint ci ratio: 1.660650e-01	ci left: 3.382427e-04	ci right 4.001238e-04	k: 556	n:1510000
Cons ci ratio: 3.358205e-03	ci left: 4.735404e-01	ci right 4.751339e-01	k: 716249	n:1510000
KS ci ratio: 1.809806e-01	ci left: 2.824902e-04	ci right 3.393227e-04	k: 468	n:1510000
FAM21C   1510000 perm   1111 sec   (1359 perm/sec)   p_kst 3.099338e-04   p_cons 4.743371e-01   p_joint 3.682119e-04

Joint ci ratio: 1.653246e-01	ci left: 3.391705e-04	ci right 4.009171e-04	k: 561	n:1520000
Cons ci ratio: 3.347266e-03	ci left: 4.735243e-01	ci right 4.751126e-01	k: 720964	n:1520000
KS ci ratio: 1.802137e-01	ci left: 2.831443e-04	ci right 3.398407e-04	k: 472	n:1520000
FAM21C   1520000 perm   1124 sec   (1353 perm/sec)   p_kst 3.105263e-04   p_cons 4.743184e-01   p_joint 3.690789e-04

Joint ci ratio: 1.644490e-01	ci left: 3.407135e-04	ci right 4.023800e-04	k: 567	n:1530000
Cons ci ratio: 3.336192e-03	ci left: 4.735444e-01	ci right 4.751275e-01	k: 725734	n:1530000
KS ci ratio: 1.792686e-01	ci left: 2.844147e-04	ci right 3.410344e-04	k: 477	n:1530000
FAM21C   1530000 perm   1136 sec   (1346 perm/sec)   p_kst 3.117647e-04   p_cons 4.743359e-01   p_joint 3.705882e-04

Joint ci ratio: 1.631611e-01	ci left: 3.441057e-04	ci right 4.058506e-04	k: 576	n:1540000
Cons ci ratio: 3.325465e-03	ci left: 4.735286e-01	ci right 4.751066e-01	k: 730449	n:1540000
KS ci ratio: 1.779699e-01	ci left: 2.869101e-04	ci right 3.435683e-04	k: 484	n:1540000
FAM21C   1540000 perm   1149 sec   (1340 perm/sec)   p_kst 3.142857e-04   p_cons 4.743175e-01   p_joint 3.740260e-04

Joint ci ratio: 1.623192e-01	ci left: 3.455990e-04	ci right 4.072606e-04	k: 582	n:1550000
Cons ci ratio: 3.314897e-03	ci left: 4.735046e-01	ci right 4.750774e-01	k: 735151	n:1550000
KS ci ratio: 1.765198e-01	ci left: 2.899914e-04	ci right 3.467417e-04	k: 492	n:1550000
FAM21C   1550000 perm   1162 sec   (1334 perm/sec)   p_kst 3.174194e-04   p_cons 4.742910e-01   p_joint 3.754839e-04

Joint ci ratio: 1.620416e-01	ci left: 3.446137e-04	ci right 4.059840e-04	k: 584	n:1560000
Cons ci ratio: 3.303949e-03	ci left: 4.735533e-01	ci right 4.751211e-01	k: 739966	n:1560000
KS ci ratio: 1.759852e-01	ci left: 2.899707e-04	ci right 3.465268e-04	k: 495	n:1560000
FAM21C   1560000 perm   1175 sec   (1327 perm/sec)   p_kst 3.173077e-04   p_cons 4.743372e-01   p_joint 3.743590e-04

Joint ci ratio: 1.614904e-01	ci left: 3.448633e-04	ci right 4.060490e-04	k: 588	n:1570000
Cons ci ratio: 3.293635e-03	ci left: 4.735218e-01	ci right 4.750846e-01	k: 744656	n:1570000
KS ci ratio: 1.754554e-01	ci left: 2.899506e-04	ci right 3.463144e-04	k: 498	n:1570000
FAM21C   1570000 perm   1188 sec   (1321 perm/sec)   p_kst 3.171975e-04   p_cons 4.743032e-01   p_joint 3.745223e-04

Joint ci ratio: 1.610808e-01	ci left: 3.445027e-04	ci right 4.054544e-04	k: 591	n:1580000
Cons ci ratio: 3.283241e-03	ci left: 4.735173e-01	ci right 4.750752e-01	k: 749388	n:1580000
KS ci ratio: 1.751049e-01	ci left: 2.893257e-04	ci right 3.454439e-04	k: 500	n:1580000
FAM21C   1580000 perm   1202 sec   (1315 perm/sec)   p_kst 3.164557e-04   p_cons 4.742962e-01   p_joint 3.740506e-04

Joint ci ratio: 1.604047e-01	ci left: 3.453542e-04	ci right 4.061754e-04	k: 596	n:1590000
Cons ci ratio: 3.272273e-03	ci left: 4.736154e-01	ci right 4.751683e-01	k: 754283	n:1590000
KS ci ratio: 1.747565e-01	ci left: 2.887088e-04	ci right 3.445842e-04	k: 502	n:1590000
FAM21C   1590000 perm   1215 sec   (1309 perm/sec)   p_kst 3.157233e-04   p_cons 4.743918e-01   p_joint 3.748428e-04

Joint ci ratio: 1.601368e-01	ci left: 3.443956e-04	ci right 4.049369e-04	k: 598	n:1600000
Cons ci ratio: 3.262019e-03	ci left: 4.736198e-01	ci right 4.751678e-01	k: 759030	n:1600000
KS ci ratio: 1.740657e-01	ci left: 2.892953e-04	ci right 3.450395e-04	k: 506	n:1600000
FAM21C   1600000 perm   1228 sec   (1303 perm/sec)   p_kst 3.162500e-04   p_cons 4.743938e-01   p_joint 3.737500e-04

Joint ci ratio: 1.598702e-01	ci left: 3.434490e-04	ci right 4.037137e-04	k: 600	n:1610000
Cons ci ratio: 3.252143e-03	ci left: 4.735806e-01	ci right 4.751238e-01	k: 763707	n:1610000
KS ci ratio: 1.737234e-01	ci left: 2.886866e-04	ci right 3.441927e-04	k: 508	n:1610000
FAM21C   1610000 perm   1241 sec   (1298 perm/sec)   p_kst 3.155280e-04   p_cons 4.743522e-01   p_joint 3.726708e-04

Joint ci ratio: 1.594728e-01	ci left: 3.431068e-04	ci right 4.031474e-04	k: 603	n:1620000
Cons ci ratio: 3.242121e-03	ci left: 4.735783e-01	ci right 4.751168e-01	k: 768443	n:1620000
KS ci ratio: 1.735531e-01	ci left: 2.874950e-04	ci right 3.427122e-04	k: 509	n:1620000
FAM21C   1620000 perm   1254 sec   (1292 perm/sec)   p_kst 3.141975e-04   p_cons 4.743475e-01   p_joint 3.722222e-04

Joint ci ratio: 1.586864e-01	ci left: 3.445363e-04	ci right 4.045015e-04	k: 609	n:1630000
Cons ci ratio: 3.231904e-03	ci left: 4.736203e-01	ci right 4.751540e-01	k: 773251	n:1630000
KS ci ratio: 1.730449e-01	ci left: 2.874919e-04	ci right 3.425299e-04	k: 512	n:1630000
FAM21C   1630000 perm   1268 sec   (1286 perm/sec)   p_kst 3.141104e-04   p_cons 4.743871e-01   p_joint 3.736196e-04

Joint ci ratio: 1.581687e-01	ci left: 3.447778e-04	ci right 4.045707e-04	k: 613	n:1640000
Cons ci ratio: 3.222066e-03	ci left: 4.736178e-01	ci right 4.751469e-01	k: 777987	n:1640000
KS ci ratio: 1.723742e-01	ci left: 2.880725e-04	ci right 3.429856e-04	k: 516	n:1640000
FAM21C   1640000 perm   1282 sec   (1280 perm/sec)   p_kst 3.146341e-04   p_cons 4.743823e-01   p_joint 3.737805e-04

Joint ci ratio: 1.579118e-01	ci left: 3.438524e-04	ci right 4.033788e-04	k: 615	n:1650000
Cons ci ratio: 3.212220e-03	ci left: 4.736306e-01	ci right 4.751550e-01	k: 782748	n:1650000
KS ci ratio: 1.722078e-01	ci left: 2.869065e-04	ci right 3.415391e-04	k: 517	n:1650000
FAM21C   1650000 perm   1296 sec   (1274 perm/sec)   p_kst 3.133333e-04   p_cons 4.743927e-01   p_joint 3.727273e-04

Joint ci ratio: 1.575287e-01	ci left: 3.435169e-04	ci right 4.028273e-04	k: 618	n:1660000
Cons ci ratio: 3.202662e-03	ci left: 4.736124e-01	ci right 4.751322e-01	k: 787458	n:1660000
KS ci ratio: 1.715467e-01	ci left: 2.874842e-04	ci right 3.419948e-04	k: 521	n:1660000
FAM21C   1660000 perm   1309 sec   (1268 perm/sec)   p_kst 3.138554e-04   p_cons 4.743723e-01   p_joint 3.722892e-04

Joint ci ratio: 1.568962e-01	ci left: 3.443362e-04	ci right 4.035268e-04	k: 623	n:1670000
Cons ci ratio: 3.193295e-03	ci left: 4.735777e-01	ci right 4.750930e-01	k: 792140	n:1670000
KS ci ratio: 1.712191e-01	ci left: 2.869089e-04	ci right 3.411959e-04	k: 523	n:1670000
FAM21C   1670000 perm   1323 sec   (1263 perm/sec)   p_kst 3.131737e-04   p_cons 4.743353e-01   p_joint 3.730539e-04

Joint ci ratio: 1.566455e-01	ci left: 3.434303e-04	ci right 4.023620e-04	k: 625	n:1680000
Cons ci ratio: 3.183535e-03	ci left: 4.736179e-01	ci right 4.751286e-01	k: 796947	n:1680000
KS ci ratio: 1.705692e-01	ci left: 2.874803e-04	ci right 3.416477e-04	k: 527	n:1680000
FAM21C   1680000 perm   1337 sec   (1257 perm/sec)   p_kst 3.136905e-04   p_cons 4.743732e-01   p_joint 3.720238e-04

Joint ci ratio: 1.561474e-01	ci left: 3.436724e-04	ci right 4.024406e-04	k: 629	n:1690000
Cons ci ratio: 3.174207e-03	ci left: 4.736037e-01	ci right 4.751100e-01	k: 801663	n:1690000
KS ci ratio: 1.700867e-01	ci left: 2.874787e-04	ci right 3.414768e-04	k: 530	n:1690000
FAM21C   1690000 perm   1350 sec   (1252 perm/sec)   p_kst 3.136095e-04   p_cons 4.743568e-01   p_joint 3.721893e-04

Joint ci ratio: 1.554090e-01	ci left: 3.450427e-04	ci right 4.037402e-04	k: 635	n:1700000
Cons ci ratio: 3.164882e-03	ci left: 4.736021e-01	ci right 4.751039e-01	k: 806400	n:1700000
KS ci ratio: 1.686631e-01	ci left: 2.908574e-04	ci right 3.449864e-04	k: 539	n:1700000
FAM21C   1700000 perm   1364 sec   (1246 perm/sec)   p_kst 3.170588e-04   p_cons 4.743529e-01   p_joint 3.735294e-04

Joint ci ratio: 1.550438e-01	ci left: 3.447111e-04	ci right 4.032016e-04	k: 638	n:1710000
Cons ci ratio: 3.155624e-03	ci left: 4.736028e-01	ci right 4.751002e-01	k: 811141	n:1710000
KS ci ratio: 1.685073e-01	ci left: 2.897165e-04	ci right 3.435784e-04	k: 540	n:1710000
FAM21C   1710000 perm   1378 sec   (1241 perm/sec)   p_kst 3.157895e-04   p_cons 4.743515e-01   p_joint 3.730994e-04

Joint ci ratio: 1.544407e-01	ci left: 3.455014e-04	ci right 4.038768e-04	k: 643	n:1720000
Cons ci ratio: 3.146366e-03	ci left: 4.736163e-01	ci right 4.751094e-01	k: 815904	n:1720000
KS ci ratio: 1.680420e-01	ci left: 2.897029e-04	ci right 3.433984e-04	k: 543	n:1720000
FAM21C   1720000 perm   1392 sec   (1235 perm/sec)   p_kst 3.156977e-04   p_cons 4.743628e-01   p_joint 3.738372e-04

Joint ci ratio: 1.539633e-01	ci left: 3.457272e-04	ci right 4.039436e-04	k: 647	n:1730000
Cons ci ratio: 3.137323e-03	ci left: 4.736083e-01	ci right 4.750970e-01	k: 820630	n:1730000
KS ci ratio: 1.675805e-01	ci left: 2.896896e-04	ci right 3.432203e-04	k: 546	n:1730000
FAM21C   1730000 perm   1407 sec   (1230 perm/sec)   p_kst 3.156069e-04   p_cons 4.743526e-01   p_joint 3.739884e-04

Joint ci ratio: 1.538447e-01	ci left: 3.442928e-04	ci right 4.022189e-04	k: 648	n:1740000
Cons ci ratio: 3.128484e-03	ci left: 4.735802e-01	ci right 4.750647e-01	k: 825321	n:1740000
KS ci ratio: 1.674277e-01	ci left: 2.885753e-04	ci right 3.418466e-04	k: 547	n:1740000
FAM21C   1740000 perm   1421 sec   (1224 perm/sec)   p_kst 3.143678e-04   p_cons 4.743224e-01   p_joint 3.724138e-04

Joint ci ratio: 1.533728e-01	ci left: 3.445233e-04	ci right 4.022940e-04	k: 652	n:1750000
Cons ci ratio: 3.119355e-03	ci left: 4.736108e-01	ci right 4.750910e-01	k: 830114	n:1750000
KS ci ratio: 1.666690e-01	ci left: 2.896640e-04	ci right 3.428697e-04	k: 552	n:1750000
FAM21C   1750000 perm   1436 sec   (1219 perm/sec)   p_kst 3.154286e-04   p_cons 4.743509e-01   p_joint 3.725714e-04

Joint ci ratio: 1.531385e-01	ci left: 3.436586e-04	ci right 4.011882e-04	k: 654	n:1760000
Cons ci ratio: 3.110468e-03	ci left: 4.736149e-01	ci right 4.750909e-01	k: 834861	n:1760000
KS ci ratio: 1.666691e-01	ci left: 2.880182e-04	ci right 3.409216e-04	k: 552	n:1760000
FAM21C   1760000 perm   1450 sec   (1214 perm/sec)   p_kst 3.136364e-04   p_cons 4.743528e-01   p_joint 3.715909e-04

Joint ci ratio: 1.530219e-01	ci left: 3.422603e-04	ci right 3.995082e-04	k: 655	n:1770000
Cons ci ratio: 3.101840e-03	ci left: 4.735896e-01	ci right 4.750614e-01	k: 839556	n:1770000
KS ci ratio: 1.663686e-01	ci left: 2.874738e-04	ci right 3.401725e-04	k: 554	n:1770000
FAM21C   1770000 perm   1464 sec   (1209 perm/sec)   p_kst 3.129944e-04   p_cons 4.743254e-01   p_joint 3.700565e-04

Joint ci ratio: 1.525575e-01	ci left: 3.424988e-04	ci right 3.995968e-04	k: 659	n:1780000
Cons ci ratio: 3.093084e-03	ci left: 4.735965e-01	ci right 4.750642e-01	k: 844308	n:1780000
KS ci ratio: 1.660697e-01	ci left: 2.869356e-04	ci right 3.394317e-04	k: 556	n:1780000
FAM21C   1780000 perm   1479 sec   (1203 perm/sec)   p_kst 3.123596e-04   p_cons 4.743303e-01   p_joint 3.702247e-04

Joint ci ratio: 1.523269e-01	ci left: 3.416601e-04	ci right 3.985243e-04	k: 661	n:1790000
Cons ci ratio: 3.084236e-03	ci left: 4.736303e-01	ci right 4.750938e-01	k: 849108	n:1790000
KS ci ratio: 1.656243e-01	ci left: 2.869390e-04	ci right 3.392809e-04	k: 559	n:1790000
FAM21C   1790000 perm   1494 sec   (1198 perm/sec)   p_kst 3.122905e-04   p_cons 4.743620e-01   p_joint 3.692737e-04

Joint ci ratio: 1.516412e-01	ci left: 3.429685e-04	ci right 3.997703e-04	k: 667	n:1800000
Cons ci ratio: 3.075727e-03	ci left: 4.736208e-01	ci right 4.750803e-01	k: 853831	n:1800000
KS ci ratio: 1.648897e-01	ci left: 2.880078e-04	ci right 3.402885e-04	k: 564	n:1800000
FAM21C   1800000 perm   1509 sec   (1193 perm/sec)   p_kst 3.133333e-04   p_cons 4.743506e-01   p_joint 3.705556e-04

Joint ci ratio: 1.513018e-01	ci left: 3.426683e-04	ci right 3.992818e-04	k: 670	n:1810000
Cons ci ratio: 3.067177e-03	ci left: 4.736298e-01	ci right 4.750852e-01	k: 858587	n:1810000
KS ci ratio: 1.645987e-01	ci left: 2.874761e-04	ci right 3.395590e-04	k: 566	n:1810000
FAM21C   1810000 perm   1523 sec   (1188 perm/sec)   p_kst 3.127072e-04   p_cons 4.743575e-01   p_joint 3.701657e-04

Joint ci ratio: 1.507412e-01	ci left: 3.434290e-04	ci right 3.999390e-04	k: 675	n:1820000
Cons ci ratio: 3.058538e-03	ci left: 4.736644e-01	ci right 4.751159e-01	k: 863390	n:1820000
KS ci ratio: 1.638776e-01	ci left: 2.885309e-04	ci right 3.405533e-04	k: 571	n:1820000
FAM21C   1820000 perm   1538 sec   (1183 perm/sec)   p_kst 3.137363e-04   p_cons 4.743901e-01   p_joint 3.708791e-04

Joint ci ratio: 1.500765e-01	ci left: 3.447076e-04	ci right 4.011555e-04	k: 681	n:1830000
Cons ci ratio: 3.050173e-03	ci left: 4.736659e-01	ci right 4.751134e-01	k: 868133	n:1830000
KS ci ratio: 1.633076e-01	ci left: 2.890505e-04	ci right 3.409676e-04	k: 575	n:1830000
FAM21C   1830000 perm   1554 sec   (1178 perm/sec)   p_kst 3.142077e-04   p_cons 4.743896e-01   p_joint 3.721311e-04

Joint ci ratio: 1.497476e-01	ci left: 3.444035e-04	ci right 4.006668e-04	k: 684	n:1840000
Cons ci ratio: 3.042158e-03	ci left: 4.736212e-01	ci right 4.750647e-01	k: 872791	n:1840000
KS ci ratio: 1.630248e-01	ci left: 2.885221e-04	ci right 3.402458e-04	k: 577	n:1840000
FAM21C   1840000 perm   1569 sec   (1172 perm/sec)   p_kst 3.135870e-04   p_cons 4.743429e-01   p_joint 3.717391e-04

Joint ci ratio: 1.490959e-01	ci left: 3.456638e-04	ci right 4.018655e-04	k: 690	n:1850000
Cons ci ratio: 3.033956e-03	ci left: 4.736181e-01	ci right 4.750577e-01	k: 877525	n:1850000
KS ci ratio: 1.616323e-01	ci left: 2.921484e-04	ci right 3.440314e-04	k: 587	n:1850000
FAM21C   1850000 perm   1585 sec   (1167 perm/sec)   p_kst 3.172973e-04   p_cons 4.743378e-01   p_joint 3.729730e-04

Joint ci ratio: 1.487734e-01	ci left: 3.453582e-04	ci right 4.013779e-04	k: 693	n:1860000
Cons ci ratio: 3.025732e-03	ci left: 4.736295e-01	ci right 4.750652e-01	k: 882286	n:1860000
KS ci ratio: 1.613582e-01	ci left: 2.916096e-04	ci right 3.433004e-04	k: 589	n:1860000
FAM21C   1860000 perm   1600 sec   (1162 perm/sec)   p_kst 3.166667e-04   p_cons 4.743473e-01   p_joint 3.725806e-04

Joint ci ratio: 1.510777e-01	ci left: 3.327025e-04	ci right 3.875808e-04	k: 672	n:1870000
Cons ci ratio: 3.017607e-03	ci left: 4.736354e-01	ci right 4.750673e-01	k: 887037	n:1870000
KS ci ratio: 1.606787e-01	ci left: 2.926162e-04	ci right 3.442460e-04	k: 594	n:1870000
FAM21C   1870000 perm   1616 sec   (1157 perm/sec)   p_kst 3.176471e-04   p_cons 4.743513e-01   p_joint 3.593583e-04

Joint ci ratio: 1.506307e-01	ci left: 3.329802e-04	ci right 3.877271e-04	k: 676	n:1880000
Cons ci ratio: 3.009870e-03	ci left: 4.735876e-01	ci right 4.750157e-01	k: 891687	n:1880000
KS ci ratio: 1.600077e-01	ci left: 2.936126e-04	ci right 3.451811e-04	k: 599	n:1880000
FAM21C   1880000 perm   1632 sec   (1152 perm/sec)   p_kst 3.186170e-04   p_cons 4.743016e-01   p_joint 3.595745e-04

Joint ci ratio: 1.505196e-01	ci left: 3.317275e-04	ci right 3.862247e-04	k: 677	n:1890000
Cons ci ratio: 3.001827e-03	ci left: 4.736011e-01	ci right 4.750254e-01	k: 896452	n:1890000
KS ci ratio: 1.597418e-01	ci left: 2.930750e-04	ci right 3.444553e-04	k: 601	n:1890000
FAM21C   1890000 perm   1647 sec   (1147 perm/sec)   p_kst 3.179894e-04   p_cons 4.743132e-01   p_joint 3.582011e-04

Joint ci ratio: 1.499676e-01	ci left: 3.325143e-04	ci right 3.869223e-04	k: 682	n:1900000
Cons ci ratio: 2.994047e-03	ci left: 4.735813e-01	ci right 4.750019e-01	k: 901154	n:1900000
KS ci ratio: 1.592137e-01	ci left: 2.935537e-04	ci right 3.448316e-04	k: 605	n:1900000
FAM21C   1900000 perm   1663 sec   (1142 perm/sec)   p_kst 3.184211e-04   p_cons 4.742916e-01   p_joint 3.589474e-04

Joint ci ratio: 1.495304e-01	ci left: 3.327891e-04	ci right 3.870692e-04	k: 686	n:1910000
Cons ci ratio: 2.986315e-03	ci left: 4.735639e-01	ci right 4.749807e-01	k: 905860	n:1910000
KS ci ratio: 1.590826e-01	ci left: 2.925195e-04	ci right 3.435706e-04	k: 606	n:1910000
FAM21C   1910000 perm   1679 sec   (1137 perm/sec)   p_kst 3.172775e-04   p_cons 4.742723e-01   p_joint 3.591623e-04

Joint ci ratio: 1.494218e-01	ci left: 3.315572e-04	ci right 3.855935e-04	k: 687	n:1920000
Cons ci ratio: 2.978617e-03	ci left: 4.735508e-01	ci right 4.749639e-01	k: 910574	n:1920000
KS ci ratio: 1.584313e-01	ci left: 2.934967e-04	ci right 3.444887e-04	k: 611	n:1920000
FAM21C   1920000 perm   1696 sec   (1132 perm/sec)   p_kst 3.182292e-04   p_cons 4.742573e-01   p_joint 3.578125e-04

Joint ci ratio: 1.493134e-01	ci left: 3.303380e-04	ci right 3.841331e-04	k: 688	n:1930000
Cons ci ratio: 2.970985e-03	ci left: 4.735368e-01	ci right 4.749462e-01	k: 915286	n:1930000
KS ci ratio: 1.583021e-01	ci left: 2.924736e-04	ci right 3.432424e-04	k: 612	n:1930000
FAM21C   1930000 perm   1711 sec   (1128 perm/sec)   p_kst 3.170984e-04   p_cons 4.742415e-01   p_joint 3.564767e-04

Joint ci ratio: 1.489894e-01	ci left: 3.301239e-04	ci right 3.837571e-04	k: 691	n:1940000
Cons ci ratio: 2.963185e-03	ci left: 4.735610e-01	ci right 4.749669e-01	k: 920072	n:1940000
KS ci ratio: 1.579162e-01	ci left: 2.924512e-04	ci right 3.430807e-04	k: 615	n:1940000
FAM21C   1940000 perm   1727 sec   (1123 perm/sec)   p_kst 3.170103e-04   p_cons 4.742639e-01   p_joint 3.561856e-04

Joint ci ratio: 1.486675e-01	ci left: 3.299122e-04	ci right 3.833849e-04	k: 694	n:1950000
Cons ci ratio: 2.955330e-03	ci left: 4.736046e-01	ci right 4.750068e-01	k: 924896	n:1950000
KS ci ratio: 1.572791e-01	ci left: 2.934144e-04	ci right 3.439864e-04	k: 620	n:1950000
FAM21C   1950000 perm   1743 sec   (1119 perm/sec)   p_kst 3.179487e-04   p_cons 4.743056e-01   p_joint 3.558974e-04

Joint ci ratio: 1.483477e-01	ci left: 3.297027e-04	ci right 3.830163e-04	k: 697	n:1960000
Cons ci ratio: 2.947974e-03	ci left: 4.735737e-01	ci right 4.749723e-01	k: 929575	n:1960000
KS ci ratio: 1.567750e-01	ci left: 2.938780e-04	ci right 3.443523e-04	k: 624	n:1960000
FAM21C   1960000 perm   1759 sec   (1114 perm/sec)   p_kst 3.183673e-04   p_cons 4.742730e-01   p_joint 3.556122e-04

Joint ci ratio: 1.481357e-01	ci left: 3.290066e-04	ci right 3.821249e-04	k: 699	n:1970000
Cons ci ratio: 2.940452e-03	ci left: 4.735807e-01	ci right 4.749757e-01	k: 934328	n:1970000
KS ci ratio: 1.565248e-01	ci left: 2.933617e-04	ci right 3.436593e-04	k: 626	n:1970000
FAM21C   1970000 perm   1775 sec   (1110 perm/sec)   p_kst 3.177665e-04   p_cons 4.742782e-01   p_joint 3.548223e-04

Joint ci ratio: 1.569008e-01	ci left: 2.904243e-04	ci right 3.403492e-04	k: 623	n:1980000
Cons ci ratio: 2.933183e-03	ci left: 4.735543e-01	ci right 4.749458e-01	k: 939015	n:1980000
KS ci ratio: 1.559043e-01	ci left: 2.943066e-04	ci right 3.445475e-04	k: 631	n:1980000
FAM21C   1980000 perm   1792 sec   (1105 perm/sec)   p_kst 3.186869e-04   p_cons 4.742500e-01   p_joint 3.146465e-04

Joint ci ratio: 1.565250e-01	ci left: 2.904133e-04	ci right 3.402055e-04	k: 626	n:1990000
Cons ci ratio: 2.925784e-03	ci left: 4.735593e-01	ci right 4.749473e-01	k: 943764	n:1990000
KS ci ratio: 1.552912e-01	ci left: 2.952424e-04	ci right 3.454264e-04	k: 636	n:1990000
FAM21C   1990000 perm   1808 sec   (1101 perm/sec)   p_kst 3.195980e-04   p_cons 4.742533e-01   p_joint 3.145729e-04

Joint ci ratio: 1.468820e-01	ci left: 3.298501e-04	ci right 3.826143e-04	k: 711	n:2000000
Cons ci ratio: 2.918456e-03	ci left: 4.735618e-01	ci right 4.749463e-01	k: 948508	n:2000000
KS ci ratio: 1.550480e-01	ci left: 2.947274e-04	ci right 3.447381e-04	k: 638	n:2000000
FAM21C   2000000 perm   1824 sec   (1097 perm/sec)   p_kst 3.190000e-04   p_cons 4.742540e-01   p_joint 3.555000e-04

Joint ci ratio: 1.466762e-01	ci left: 3.291675e-04	ci right 3.817423e-04	k: 713	n:2010000
Cons ci ratio: 2.911143e-03	ci left: 4.735712e-01	ci right 4.749523e-01	k: 953266	n:2010000
KS ci ratio: 1.548060e-01	ci left: 2.942175e-04	ci right 3.440566e-04	k: 640	n:2010000
FAM21C   2010000 perm   1841 sec   (1092 perm/sec)   p_kst 3.184080e-04   p_cons 4.742617e-01   p_joint 3.547264e-04

Joint ci ratio: 1.465737e-01	ci left: 3.280149e-04	ci right 3.803657e-04	k: 714	n:2020000
Cons ci ratio: 2.903688e-03	ci left: 4.736142e-01	ci right 4.749919e-01	k: 958092	n:2020000
KS ci ratio: 1.545651e-01	ci left: 2.937128e-04	ci right 3.433817e-04	k: 642	n:2020000
FAM21C   2020000 perm   1857 sec   (1088 perm/sec)   p_kst 3.178218e-04   p_cons 4.743030e-01   p_joint 3.534653e-04

Joint ci ratio: 1.463692e-01	ci left: 3.273481e-04	ci right 3.795133e-04	k: 716	n:2030000
Cons ci ratio: 2.896544e-03	ci left: 4.736129e-01	ci right 4.749872e-01	k: 962829	n:2030000
KS ci ratio: 1.543253e-01	ci left: 2.932131e-04	ci right 3.427135e-04	k: 644	n:2030000
FAM21C   2030000 perm   1874 sec   (1083 perm/sec)   p_kst 3.172414e-04   p_cons 4.743000e-01   p_joint 3.527094e-04

Joint ci ratio: 1.462673e-01	ci left: 3.262157e-04	ci right 3.781611e-04	k: 717	n:2040000
Cons ci ratio: 2.889126e-03	ci left: 4.736680e-01	ci right 4.750389e-01	k: 967681	n:2040000
KS ci ratio: 1.542059e-01	ci left: 2.922470e-04	ci right 3.415426e-04	k: 645	n:2040000
FAM21C   2040000 perm   1890 sec   (1079 perm/sec)   p_kst 3.161765e-04   p_cons 4.743534e-01   p_joint 3.514706e-04

Joint ci ratio: 1.459627e-01	ci left: 3.260343e-04	ci right 3.778333e-04	k: 720	n:2050000
Cons ci ratio: 2.882157e-03	ci left: 4.736548e-01	ci right 4.750224e-01	k: 972394	n:2050000
KS ci ratio: 1.538491e-01	ci left: 2.922284e-04	ci right 3.413963e-04	k: 648	n:2050000
FAM21C   2050000 perm   1907 sec   (1075 perm/sec)   p_kst 3.160976e-04   p_cons 4.743385e-01   p_joint 3.512195e-04

Joint ci ratio: 1.457607e-01	ci left: 3.253871e-04	ci right 3.770054e-04	k: 722	n:2060000
Cons ci ratio: 2.875053e-03	ci left: 4.736737e-01	ci right 4.750380e-01	k: 977173	n:2060000
KS ci ratio: 1.536126e-01	ci left: 2.917434e-04	ci right 3.407473e-04	k: 650	n:2060000
FAM21C   2060000 perm   1924 sec   (1071 perm/sec)   p_kst 3.155340e-04   p_cons 4.743558e-01   p_joint 3.504854e-04

Joint ci ratio: 1.455596e-01	ci left: 3.247461e-04	ci right 3.761855e-04	k: 724	n:2070000
Cons ci ratio: 2.868144e-03	ci left: 4.736679e-01	ci right 4.750288e-01	k: 981901	n:2070000
KS ci ratio: 1.534948e-01	ci left: 2.907985e-04	ci right 3.396028e-04	k: 651	n:2070000
FAM21C   2070000 perm   1941 sec   (1066 perm/sec)   p_kst 3.144928e-04   p_cons 4.743483e-01   p_joint 3.497585e-04

Joint ci ratio: 1.452594e-01	ci left: 3.245747e-04	ci right 3.758717e-04	k: 727	n:2080000
Cons ci ratio: 2.861270e-03	ci left: 4.736645e-01	ci right 4.750221e-01	k: 986634	n:2080000
KS ci ratio: 1.532600e-01	ci left: 2.903251e-04	ci right 3.389685e-04	k: 653	n:2080000
FAM21C   2080000 perm   1958 sec   (1062 perm/sec)   p_kst 3.139423e-04   p_cons 4.743433e-01   p_joint 3.495192e-04

Joint ci ratio: 1.446644e-01	ci left: 3.257884e-04	ci right 3.770481e-04	k: 733	n:2090000
Cons ci ratio: 2.854442e-03	ci left: 4.736616e-01	ci right 4.750160e-01	k: 991368	n:2090000
KS ci ratio: 1.523310e-01	ci left: 2.926174e-04	ci right 3.413206e-04	k: 661	n:2090000
FAM21C   2090000 perm   1976 sec   (1058 perm/sec)   p_kst 3.162679e-04   p_cons 4.743388e-01   p_joint 3.507177e-04

Joint ci ratio: 1.445660e-01	ci left: 3.246960e-04	ci right 3.757461e-04	k: 734	n:2100000
Cons ci ratio: 2.847742e-03	ci left: 4.736449e-01	ci right 4.749961e-01	k: 996073	n:2100000
KS ci ratio: 1.521014e-01	ci left: 2.921401e-04	ci right 3.406839e-04	k: 663	n:2100000
FAM21C   2100000 perm   1993 sec   (1054 perm/sec)   p_kst 3.157143e-04   p_cons 4.743205e-01   p_joint 3.495238e-04

Joint ci ratio: 1.443698e-01	ci left: 3.240707e-04	ci right 3.749474e-04	k: 736	n:2110000
Cons ci ratio: 2.840657e-03	ci left: 4.737042e-01	ci right 4.750522e-01	k: 1000938	n:2110000
KS ci ratio: 1.516453e-01	ci left: 2.925792e-04	ci right 3.410370e-04	k: 667	n:2110000
FAM21C   2110000 perm   2010 sec   (1050 perm/sec)   p_kst 3.161137e-04   p_cons 4.743782e-01   p_joint 3.488152e-04

Joint ci ratio: 1.437856e-01	ci left: 3.252703e-04	ci right 3.761109e-04	k: 742	n:2120000
Cons ci ratio: 2.833976e-03	ci left: 4.737012e-01	ci right 4.750460e-01	k: 1005672	n:2120000
KS ci ratio: 1.510809e-01	ci left: 2.934683e-04	ci right 3.418761e-04	k: 672	n:2120000
FAM21C   2120000 perm   2028 sec   (1046 perm/sec)   p_kst 3.169811e-04   p_cons 4.743736e-01   p_joint 3.500000e-04

Joint ci ratio: 1.429224e-01	ci left: 3.278170e-04	ci right 3.787219e-04	k: 751	n:2130000
Cons ci ratio: 2.827318e-03	ci left: 4.737024e-01	ci right 4.750441e-01	k: 1010415	n:2130000
KS ci ratio: 1.499705e-01	ci left: 2.966086e-04	ci right 3.451425e-04	k: 682	n:2130000
FAM21C   2130000 perm   2045 sec   (1041 perm/sec)   p_kst 3.201878e-04   p_cons 4.743732e-01   p_joint 3.525822e-04

Joint ci ratio: 1.428276e-01	ci left: 3.267357e-04	ci right 3.774361e-04	k: 752	n:2140000
Cons ci ratio: 2.820735e-03	ci left: 4.736985e-01	ci right 4.750370e-01	k: 1015147	n:2140000
KS ci ratio: 1.496423e-01	ci left: 2.965719e-04	ci right 3.449841e-04	k: 685	n:2140000
FAM21C   2140000 perm   2062 sec   (1038 perm/sec)   p_kst 3.200935e-04   p_cons 4.743678e-01   p_joint 3.514019e-04

Joint ci ratio: 1.426383e-01	ci left: 3.261130e-04	ci right 3.766441e-04	k: 754	n:2150000
Cons ci ratio: 2.814080e-03	ci left: 4.737156e-01	ci right 4.750510e-01	k: 1019924	n:2150000
KS ci ratio: 1.494247e-01	ci left: 2.960879e-04	ci right 3.443445e-04	k: 687	n:2150000
FAM21C   2150000 perm   2080 sec   (1034 perm/sec)   p_kst 3.195349e-04   p_cons 4.743833e-01   p_joint 3.506977e-04

Joint ci ratio: 1.420748e-01	ci left: 3.272821e-04	ci right 3.777770e-04	k: 760	n:2160000
Cons ci ratio: 2.807485e-03	ci left: 4.737302e-01	ci right 4.750625e-01	k: 1024696	n:2160000
KS ci ratio: 1.489921e-01	ci left: 2.964998e-04	ci right 3.446713e-04	k: 691	n:2160000
FAM21C   2160000 perm   2097 sec   (1030 perm/sec)   p_kst 3.199074e-04   p_cons 4.743963e-01   p_joint 3.518519e-04

Joint ci ratio: 1.419816e-01	ci left: 3.262183e-04	ci right 3.765133e-04	k: 761	n:2170000
Cons ci ratio: 2.800928e-03	ci left: 4.737460e-01	ci right 4.750752e-01	k: 1029471	n:2170000
KS ci ratio: 1.488847e-01	ci left: 2.955771e-04	ci right 3.435609e-04	k: 692	n:2170000
FAM21C   2170000 perm   2115 sec   (1026 perm/sec)   p_kst 3.188940e-04   p_cons 4.744106e-01   p_joint 3.506912e-04

Joint ci ratio: 1.417030e-01	ci left: 3.260492e-04	ci right 3.762111e-04	k: 764	n:2180000
Cons ci ratio: 2.794476e-03	ci left: 4.737512e-01	ci right 4.750773e-01	k: 1034223	n:2180000
KS ci ratio: 1.478217e-01	ci left: 2.986382e-04	ci right 3.467422e-04	k: 702	n:2180000
FAM21C   2180000 perm   2132 sec   (1022 perm/sec)   p_kst 3.220183e-04   p_cons 4.744142e-01   p_joint 3.504587e-04

Joint ci ratio: 1.499712e-01	ci left: 2.884822e-04	ci right 3.356867e-04	k: 682	n:2190000
Cons ci ratio: 2.788268e-03	ci left: 4.737207e-01	ci right 4.750438e-01	k: 1038897	n:2190000
KS ci ratio: 1.475073e-01	ci left: 2.985938e-04	ci right 3.465793e-04	k: 705	n:2190000
FAM21C   2190000 perm   2150 sec   (1019 perm/sec)   p_kst 3.219178e-04   p_cons 4.743822e-01   p_joint 3.114155e-04

Joint ci ratio: 1.496429e-01	ci left: 2.884834e-04	ci right 3.355755e-04	k: 685	n:2200000
Cons ci ratio: 2.781954e-03	ci left: 4.737168e-01	ci right 4.750369e-01	k: 1043629	n:2200000
KS ci ratio: 1.470912e-01	ci left: 2.989877e-04	ci right 3.468891e-04	k: 709	n:2200000
FAM21C   2200000 perm   2168 sec   (1015 perm/sec)   p_kst 3.222727e-04   p_cons 4.743768e-01   p_joint 3.113636e-04

Joint ci ratio: 1.400645e-01	ci left: 3.294810e-04	ci right 3.795358e-04	k: 782	n:2210000
Cons ci ratio: 2.775451e-03	ci left: 4.737546e-01	ci right 4.750717e-01	k: 1048453	n:2210000
KS ci ratio: 1.467814e-01	ci left: 2.989424e-04	ci right 3.467268e-04	k: 712	n:2210000
FAM21C   2210000 perm   2185 sec   (1011 perm/sec)   p_kst 3.221719e-04   p_cons 4.744131e-01   p_joint 3.538462e-04

Joint ci ratio: 1.397081e-01	ci left: 3.297356e-04	ci right 3.796910e-04	k: 786	n:2220000
Cons ci ratio: 2.769338e-03	ci left: 4.737299e-01	ci right 4.750441e-01	k: 1053139	n:2220000
KS ci ratio: 1.464736e-01	ci left: 2.988976e-04	ci right 3.465659e-04	k: 715	n:2220000
FAM21C   2220000 perm   2203 sec   (1008 perm/sec)   p_kst 3.220721e-04   p_cons 4.743869e-01   p_joint 3.540541e-04

Joint ci ratio: 1.393544e-01	ci left: 3.299881e-04	ci right 3.798446e-04	k: 790	n:2230000
Cons ci ratio: 2.763131e-03	ci left: 4.737296e-01	ci right 4.750408e-01	k: 1057879	n:2230000
KS ci ratio: 1.460662e-01	ci left: 2.992853e-04	ci right 3.468711e-04	k: 719	n:2230000
FAM21C   2230000 perm   2221 sec   (1004 perm/sec)   p_kst 3.224215e-04   p_cons 4.743852e-01   p_joint 3.542601e-04

Joint ci ratio: 1.390909e-01	ci left: 3.298075e-04	ci right 3.795348e-04	k: 793	n:2240000
Cons ci ratio: 2.757114e-03	ci left: 4.737026e-01	ci right 4.750109e-01	k: 1062559	n:2240000
KS ci ratio: 1.458637e-01	ci left: 2.988095e-04	ci right 3.462480e-04	k: 721	n:2240000
FAM21C   2240000 perm   2239 sec   (1000 perm/sec)   p_kst 3.218750e-04   p_cons 4.743567e-01   p_joint 3.540179e-04

Joint ci ratio: 1.477174e-01	ci left: 2.897751e-04	ci right 3.364157e-04	k: 703	n:2250000
Cons ci ratio: 2.750997e-03	ci left: 4.737011e-01	ci right 4.750065e-01	k: 1067296	n:2250000
KS ci ratio: 1.454613e-01	ci left: 2.991944e-04	ci right 3.465517e-04	k: 725	n:2250000
FAM21C   2250000 perm   2257 sec   (997 perm/sec)   p_kst 3.222222e-04   p_cons 4.743538e-01   p_joint 3.124444e-04

Joint ci ratio: 1.470918e-01	ci left: 2.910499e-04	ci right 3.376798e-04	k: 709	n:2260000
Cons ci ratio: 2.744757e-03	ci left: 4.737293e-01	ci right 4.750318e-01	k: 1072100	n:2260000
KS ci ratio: 1.452614e-01	ci left: 2.987233e-04	ci right 3.459354e-04	k: 727	n:2260000
FAM21C   2260000 perm   2275 sec   (993 perm/sec)   p_kst 3.216814e-04   p_cons 4.743805e-01   p_joint 3.137168e-04

Joint ci ratio: 1.470919e-01	ci left: 2.897677e-04	ci right 3.361922e-04	k: 709	n:2270000
Cons ci ratio: 2.738682e-03	ci left: 4.737348e-01	ci right 4.750344e-01	k: 1076853	n:2270000
KS ci ratio: 1.452615e-01	ci left: 2.974073e-04	ci right 3.444114e-04	k: 727	n:2270000
FAM21C   2270000 perm   2294 sec   (990 perm/sec)   p_kst 3.202643e-04   p_cons 4.743846e-01   p_joint 3.123348e-04

Joint ci ratio: 1.468852e-01	ci left: 2.893417e-04	ci right 3.356271e-04	k: 711	n:2280000
Cons ci ratio: 2.732784e-03	ci left: 4.737153e-01	ci right 4.750120e-01	k: 1081549	n:2280000
KS ci ratio: 1.447652e-01	ci left: 2.982163e-04	ci right 3.451733e-04	k: 732	n:2280000
FAM21C   2280000 perm   2312 sec   (986 perm/sec)   p_kst 3.210526e-04   p_cons 4.743636e-01   p_joint 3.118421e-04

Joint ci ratio: 1.466794e-01	ci left: 2.889195e-04	ci right 3.350669e-04	k: 713	n:2290000
Cons ci ratio: 2.726860e-03	ci left: 4.737077e-01	ci right 4.750016e-01	k: 1086272	n:2290000
KS ci ratio: 1.446666e-01	ci left: 2.973349e-04	ci right 3.441185e-04	k: 733	n:2290000
FAM21C   2290000 perm   2330 sec   (983 perm/sec)   p_kst 3.200873e-04   p_cons 4.743546e-01   p_joint 3.113537e-04

Joint ci ratio: 1.464744e-01	ci left: 2.885010e-04	ci right 3.345116e-04	k: 715	n:2300000
Cons ci ratio: 2.720906e-03	ci left: 4.737127e-01	ci right 4.750038e-01	k: 1091024	n:2300000
KS ci ratio: 1.445682e-01	ci left: 2.964612e-04	ci right 3.430729e-04	k: 734	n:2300000
FAM21C   2300000 perm   2349 sec   (979 perm/sec)   p_kst 3.191304e-04   p_cons 4.743583e-01   p_joint 3.108696e-04

Joint ci ratio: 1.460670e-01	ci left: 2.889203e-04	ci right 3.348584e-04	k: 719	n:2310000
Cons ci ratio: 2.715120e-03	ci left: 4.736940e-01	ci right 4.749823e-01	k: 1095721	n:2310000
KS ci ratio: 1.437877e-01	ci left: 2.985161e-04	ci right 3.451757e-04	k: 742	n:2310000
FAM21C   2310000 perm   2368 sec   (975 perm/sec)   p_kst 3.212121e-04   p_cons 4.743381e-01   p_joint 3.112554e-04

Joint ci ratio: 1.456629e-01	ci left: 2.893362e-04	ci right 3.352020e-04	k: 723	n:2320000
Cons ci ratio: 2.709476e-03	ci left: 4.736560e-01	ci right 4.749415e-01	k: 1100373	n:2320000
KS ci ratio: 1.433063e-01	ci left: 2.993072e-04	ci right 3.459204e-04	k: 747	n:2320000
FAM21C   2320000 perm   2387 sec   (972 perm/sec)   p_kst 3.219828e-04   p_cons 4.742987e-01   p_joint 3.116379e-04

Joint ci ratio: 1.455625e-01	ci left: 2.885080e-04	ci right 3.342082e-04	k: 724	n:2330000
Cons ci ratio: 2.703679e-03	ci left: 4.736531e-01	ci right 4.749358e-01	k: 1105106	n:2330000
KS ci ratio: 1.430197e-01	ci left: 2.992641e-04	ci right 3.457694e-04	k: 750	n:2330000
FAM21C   2330000 perm   2406 sec   (969 perm/sec)   p_kst 3.218884e-04   p_cons 4.742944e-01   p_joint 3.107296e-04

Joint ci ratio: 1.453621e-01	ci left: 2.880986e-04	ci right 3.336658e-04	k: 726	n:2340000
Cons ci ratio: 2.697983e-03	ci left: 4.736382e-01	ci right 4.749182e-01	k: 1109811	n:2340000
KS ci ratio: 1.429247e-01	ci left: 2.983972e-04	ci right 3.447344e-04	k: 751	n:2340000
FAM21C   2340000 perm   2424 sec   (965 perm/sec)   p_kst 3.209402e-04   p_cons 4.742782e-01   p_joint 3.102564e-04

Joint ci ratio: 1.451626e-01	ci left: 2.876928e-04	ci right 3.331279e-04	k: 728	n:2350000
Cons ci ratio: 2.692473e-03	ci left: 4.735959e-01	ci right 4.748731e-01	k: 1114451	n:2350000
KS ci ratio: 1.426405e-01	ci left: 2.983584e-04	ci right 3.445896e-04	k: 754	n:2350000
FAM21C   2350000 perm   2443 sec   (962 perm/sec)   p_kst 3.208511e-04   p_cons 4.742345e-01   p_joint 3.097872e-04

Joint ci ratio: 1.448649e-01	ci left: 2.876988e-04	ci right 3.330336e-04	k: 731	n:2360000
Cons ci ratio: 2.686834e-03	ci left: 4.735839e-01	ci right 4.748585e-01	k: 1119162	n:2360000
KS ci ratio: 1.423579e-01	ci left: 2.983201e-04	ci right 3.444460e-04	k: 757	n:2360000
FAM21C   2360000 perm   2462 sec   (958 perm/sec)   p_kst 3.207627e-04   p_cons 4.742212e-01   p_joint 3.097458e-04

Joint ci ratio: 1.444706e-01	ci left: 2.881116e-04	ci right 3.333772e-04	k: 735	n:2370000
Cons ci ratio: 2.681142e-03	ci left: 4.735886e-01	ci right 4.748604e-01	k: 1123912	n:2370000
KS ci ratio: 1.420770e-01	ci left: 2.982821e-04	ci right 3.443035e-04	k: 760	n:2370000
FAM21C   2370000 perm   2482 sec   (955 perm/sec)   p_kst 3.206751e-04   p_cons 4.742245e-01   p_joint 3.101266e-04

Joint ci ratio: 1.440796e-01	ci left: 2.885210e-04	ci right 3.337178e-04	k: 739	n:2380000
Cons ci ratio: 2.675608e-03	ci left: 4.735705e-01	ci right 4.748397e-01	k: 1128608	n:2380000
KS ci ratio: 1.417978e-01	ci left: 2.982446e-04	ci right 3.441620e-04	k: 763	n:2380000
FAM21C   2380000 perm   2501 sec   (952 perm/sec)   p_kst 3.205882e-04   p_cons 4.742050e-01   p_joint 3.105042e-04

Joint ci ratio: 1.434990e-01	ci left: 2.897340e-04	ci right 3.349222e-04	k: 745	n:2390000
Cons ci ratio: 2.670060e-03	ci left: 4.735613e-01	ci right 4.748279e-01	k: 1133325	n:2390000
KS ci ratio: 1.414281e-01	ci left: 2.986110e-04	ci right 3.444549e-04	k: 767	n:2390000
FAM21C   2390000 perm   2520 sec   (949 perm/sec)   p_kst 3.209205e-04   p_cons 4.741946e-01   p_joint 3.117155e-04

Joint ci ratio: 1.433070e-01	ci left: 2.893302e-04	ci right 3.343899e-04	k: 747	n:2400000
Cons ci ratio: 2.664352e-03	ci left: 4.735889e-01	ci right 4.748528e-01	k: 1138130	n:2400000
KS ci ratio: 1.414282e-01	ci left: 2.973668e-04	ci right 3.430197e-04	k: 767	n:2400000
FAM21C   2400000 perm   2538 sec   (946 perm/sec)   p_kst 3.195833e-04   p_cons 4.742208e-01   p_joint 3.112500e-04

Joint ci ratio: 1.430205e-01	ci left: 2.893299e-04	ci right 3.342917e-04	k: 750	n:2410000
Cons ci ratio: 2.658847e-03	ci left: 4.735848e-01	ci right 4.748460e-01	k: 1142859	n:2410000
KS ci ratio: 1.413362e-01	ci left: 2.965332e-04	ci right 3.420260e-04	k: 768	n:2410000
FAM21C   2410000 perm   2557 sec   (942 perm/sec)   p_kst 3.186722e-04   p_cons 4.742154e-01   p_joint 3.112033e-04

Joint ci ratio: 1.424525e-01	ci left: 2.905251e-04	ci right 3.354782e-04	k: 756	n:2420000
Cons ci ratio: 2.653327e-03	ci left: 4.735901e-01	ci right 4.748488e-01	k: 1147611	n:2420000
KS ci ratio: 1.409701e-01	ci left: 2.969023e-04	ci right 3.423239e-04	k: 772	n:2420000
FAM21C   2420000 perm   2577 sec   (939 perm/sec)   p_kst 3.190083e-04   p_cons 4.742194e-01   p_joint 3.123967e-04

Joint ci ratio: 1.420776e-01	ci left: 2.909170e-04	ci right 3.358022e-04	k: 760	n:2430000
Cons ci ratio: 2.647936e-03	ci left: 4.735774e-01	ci right 4.748334e-01	k: 1152319	n:2430000
KS ci ratio: 1.406067e-01	ci left: 2.972686e-04	ci right 3.426192e-04	k: 776	n:2430000
FAM21C   2430000 perm   2596 sec   (936 perm/sec)   p_kst 3.193416e-04   p_cons 4.742053e-01   p_joint 3.127572e-04

Joint ci ratio: 1.418913e-01	ci left: 2.905153e-04	ci right 3.352748e-04	k: 762	n:2440000
Cons ci ratio: 2.642620e-03	ci left: 4.735569e-01	ci right 4.748104e-01	k: 1157008	n:2440000
KS ci ratio: 1.405164e-01	ci left: 2.964457e-04	ci right 3.416393e-04	k: 777	n:2440000
FAM21C   2440000 perm   2616 sec   (933 perm/sec)   p_kst 3.184426e-04   p_cons 4.741836e-01   p_joint 3.122951e-04

Joint ci ratio: 1.416132e-01	ci left: 2.905106e-04	ci right 3.351742e-04	k: 765	n:2450000
Cons ci ratio: 2.637184e-03	ci left: 4.735652e-01	ci right 4.748161e-01	k: 1161767	n:2450000
KS ci ratio: 1.401565e-01	ci left: 2.968111e-04	ci right 3.419348e-04	k: 781	n:2450000
FAM21C   2450000 perm   2635 sec   (930 perm/sec)   p_kst 3.187755e-04   p_cons 4.741906e-01   p_joint 3.122449e-04

Joint ci ratio: 1.414287e-01	ci left: 2.901139e-04	ci right 3.346535e-04	k: 767	n:2460000
Cons ci ratio: 2.631844e-03	ci left: 4.735616e-01	ci right 4.748100e-01	k: 1166497	n:2460000
KS ci ratio: 1.397994e-01	ci left: 2.971736e-04	ci right 3.422277e-04	k: 785	n:2460000
FAM21C   2460000 perm   2655 sec   (927 perm/sec)   p_kst 3.191057e-04   p_cons 4.741858e-01   p_joint 3.117886e-04

Joint ci ratio: 1.411533e-01	ci left: 2.901110e-04	ci right 3.345561e-04	k: 770	n:2470000
Cons ci ratio: 2.626622e-03	ci left: 4.735419e-01	ci right 4.747877e-01	k: 1171187	n:2470000
KS ci ratio: 1.395334e-01	ci left: 2.971426e-04	ci right 3.420992e-04	k: 788	n:2470000
FAM21C   2470000 perm   2675 sec   (924 perm/sec)   p_kst 3.190283e-04   p_cons 4.741648e-01   p_joint 3.117409e-04

Joint ci ratio: 1.440805e-01	ci left: 2.768870e-04	ci right 3.202616e-04	k: 739	n:2480000
Cons ci ratio: 2.621379e-03	ci left: 4.735320e-01	ci right 4.747753e-01	k: 1175901	n:2480000
KS ci ratio: 1.394451e-01	ci left: 2.963336e-04	ci right 3.411370e-04	k: 789	n:2480000
FAM21C   2480000 perm   2694 sec   (921 perm/sec)   p_kst 3.181452e-04   p_cons 4.741536e-01   p_joint 2.979839e-04

Joint ci ratio: 1.437894e-01	ci left: 2.769364e-04	ci right 3.202235e-04	k: 742	n:2490000
Cons ci ratio: 2.616044e-03	ci left: 4.735459e-01	ci right 4.747867e-01	k: 1180674	n:2490000
KS ci ratio: 1.390934e-01	ci left: 2.966940e-04	ci right 3.414294e-04	k: 793	n:2490000
FAM21C   2490000 perm   2714 sec   (917 perm/sec)   p_kst 3.184739e-04   p_cons 4.741663e-01   p_joint 2.979920e-04

Joint ci ratio: 1.435000e-01	ci left: 2.769856e-04	ci right 3.201858e-04	k: 745	n:2500000
Cons ci ratio: 2.610831e-03	ci left: 4.735425e-01	ci right 4.747808e-01	k: 1185404	n:2500000
KS ci ratio: 1.389186e-01	ci left: 2.962794e-04	ci right 3.408914e-04	k: 795	n:2500000
FAM21C   2500000 perm   2734 sec   (914 perm/sec)   p_kst 3.180000e-04   p_cons 4.741616e-01   p_joint 2.980000e-04

Joint ci ratio: 1.402468e-01	ci left: 2.893315e-04	ci right 3.333487e-04	k: 780	n:2510000
Cons ci ratio: 2.605695e-03	ci left: 4.735303e-01	ci right 4.747662e-01	k: 1190112	n:2510000
KS ci ratio: 1.387444e-01	ci left: 2.958681e-04	ci right 3.403578e-04	k: 797	n:2510000
FAM21C   2510000 perm   2754 sec   (912 perm/sec)   p_kst 3.175299e-04   p_cons 4.741482e-01   p_joint 3.107570e-04

Joint ci ratio: 1.397999e-01	ci left: 2.900980e-04	ci right 3.340795e-04	k: 785	n:2520000
Cons ci ratio: 2.600521e-03	ci left: 4.735313e-01	ci right 4.747647e-01	k: 1194853	n:2520000
KS ci ratio: 1.385709e-01	ci left: 2.954601e-04	ci right 3.398283e-04	k: 799	n:2520000
FAM21C   2520000 perm   2775 sec   (908 perm/sec)   p_kst 3.170635e-04   p_cons 4.741480e-01   p_joint 3.115079e-04

Joint ci ratio: 1.395339e-01	ci left: 2.900957e-04	ci right 3.339862e-04	k: 788	n:2530000
Cons ci ratio: 2.595392e-03	ci left: 4.735296e-01	ci right 4.747606e-01	k: 1199587	n:2530000
KS ci ratio: 1.382257e-01	ci left: 2.958186e-04	ci right 3.401209e-04	k: 803	n:2530000
FAM21C   2530000 perm   2795 sec   (905 perm/sec)   p_kst 3.173913e-04   p_cons 4.741451e-01   p_joint 3.114625e-04

Joint ci ratio: 1.393574e-01	ci left: 2.897135e-04	ci right 3.334862e-04	k: 790	n:2540000
Cons ci ratio: 2.590330e-03	ci left: 4.735208e-01	ci right 4.747493e-01	k: 1204303	n:2540000
KS ci ratio: 1.380542e-01	ci left: 2.954141e-04	ci right 3.395964e-04	k: 805	n:2540000
FAM21C   2540000 perm   2815 sec   (902 perm/sec)   p_kst 3.169291e-04   p_cons 4.741350e-01   p_joint 3.110236e-04

Joint ci ratio: 1.388318e-01	ci left: 2.908484e-04	ci right 3.346131e-04	k: 796	n:2550000
Cons ci ratio: 2.585277e-03	ci left: 4.735160e-01	ci right 4.747421e-01	k: 1209029	n:2550000
KS ci ratio: 1.377980e-01	ci left: 2.953915e-04	ci right 3.394817e-04	k: 808	n:2550000
FAM21C   2550000 perm   2835 sec   (900 perm/sec)   p_kst 3.168627e-04   p_cons 4.741290e-01   p_joint 3.121569e-04

Joint ci ratio: 1.386580e-01	ci left: 2.904664e-04	ci right 3.341144e-04	k: 798	n:2560000
Cons ci ratio: 2.580308e-03	ci left: 4.735007e-01	ci right 4.747244e-01	k: 1213728	n:2560000
KS ci ratio: 1.375432e-01	ci left: 2.953692e-04	ci right 3.393678e-04	k: 811	n:2560000
FAM21C   2560000 perm   2855 sec   (897 perm/sec)   p_kst 3.167969e-04   p_cons 4.741125e-01   p_joint 3.117187e-04

Joint ci ratio: 1.382261e-01	ci left: 2.912144e-04	ci right 3.348272e-04	k: 803	n:2570000
Cons ci ratio: 2.575241e-03	ci left: 4.735100e-01	ci right 4.747313e-01	k: 1218490	n:2570000
KS ci ratio: 1.370377e-01	ci left: 2.964743e-04	ci right 3.404621e-04	k: 817	n:2570000
FAM21C   2570000 perm   2876 sec   (893 perm/sec)   p_kst 3.178988e-04   p_cons 4.741206e-01   p_joint 3.124514e-04

Joint ci ratio: 1.381403e-01	ci left: 2.904598e-04	ci right 3.339304e-04	k: 804	n:2580000
Cons ci ratio: 2.570242e-03	ci left: 4.735119e-01	ci right 4.747308e-01	k: 1223233	n:2580000
KS ci ratio: 1.367039e-01	ci left: 2.968225e-04	ci right 3.407459e-04	k: 821	n:2580000
FAM21C   2580000 perm   2897 sec   (891 perm/sec)   p_kst 3.182171e-04   p_cons 4.741213e-01   p_joint 3.116279e-04

Joint ci ratio: 1.379690e-01	ci left: 2.900839e-04	ci right 3.334400e-04	k: 806	n:2590000
Cons ci ratio: 2.565170e-03	ci left: 4.735334e-01	ci right 4.747500e-01	k: 1228027	n:2590000
KS ci ratio: 1.365379e-01	ci left: 2.964223e-04	ci right 3.402289e-04	k: 823	n:2590000
FAM21C   2590000 perm   2918 sec   (888 perm/sec)   p_kst 3.177606e-04   p_cons 4.741417e-01   p_joint 3.111969e-04

Joint ci ratio: 1.376283e-01	ci left: 2.904536e-04	ci right 3.337490e-04	k: 810	n:2600000
Cons ci ratio: 2.560204e-03	ci left: 4.735402e-01	ci right 4.747545e-01	k: 1232783	n:2600000
KS ci ratio: 1.362077e-01	ci left: 2.967682e-04	ci right 3.405112e-04	k: 827	n:2600000
FAM21C   2600000 perm   2939 sec   (885 perm/sec)   p_kst 3.180769e-04   p_cons 4.741473e-01   p_joint 3.115385e-04

Joint ci ratio: 1.375436e-01	ci left: 2.897107e-04	ci right 3.328666e-04	k: 811	n:2610000
Cons ci ratio: 2.555337e-03	ci left: 4.735331e-01	ci right 4.747451e-01	k: 1237503	n:2610000
KS ci ratio: 1.357982e-01	ci left: 2.974817e-04	ci right 3.411874e-04	k: 832	n:2610000
FAM21C   2610000 perm   2960 sec   (882 perm/sec)   p_kst 3.187739e-04   p_cons 4.741391e-01   p_joint 3.107280e-04

Joint ci ratio: 1.374590e-01	ci left: 2.889735e-04	ci right 3.319909e-04	k: 812	n:2620000
Cons ci ratio: 2.550556e-03	ci left: 4.735147e-01	ci right 4.747243e-01	k: 1242193	n:2620000
KS ci ratio: 1.357169e-01	ci left: 2.967149e-04	ci right 3.402798e-04	k: 833	n:2620000
FAM21C   2620000 perm   2982 sec   (879 perm/sec)   p_kst 3.179389e-04   p_cons 4.741195e-01   p_joint 3.099237e-04

Joint ci ratio: 1.370382e-01	ci left: 2.897106e-04	ci right 3.326950e-04	k: 817	n:2630000
Cons ci ratio: 2.545470e-03	ci left: 4.735614e-01	ci right 4.747687e-01	k: 1247054	n:2630000
KS ci ratio: 1.356356e-01	ci left: 2.959541e-04	ci right 3.393791e-04	k: 834	n:2630000
FAM21C   2630000 perm   3004 sec   (876 perm/sec)   p_kst 3.171103e-04   p_cons 4.741650e-01   p_joint 3.106464e-04

Joint ci ratio: 1.425486e-01	ci left: 2.659492e-04	ci right 3.071297e-04	k: 755	n:2640000
Cons ci ratio: 2.540634e-03	ci left: 4.735646e-01	ci right 4.747696e-01	k: 1251801	n:2640000
KS ci ratio: 1.355545e-01	ci left: 2.951990e-04	ci right 3.384852e-04	k: 835	n:2640000
FAM21C   2640000 perm   3025 sec   (873 perm/sec)   p_kst 3.162879e-04   p_cons 4.741670e-01   p_joint 2.859848e-04

Joint ci ratio: 1.423604e-01	ci left: 2.656734e-04	ci right 3.067523e-04	k: 757	n:2650000
Cons ci ratio: 2.535946e-03	ci left: 4.735439e-01	ci right 4.747467e-01	k: 1256485	n:2650000
KS ci ratio: 1.353120e-01	ci left: 2.951787e-04	ci right 3.383783e-04	k: 838	n:2650000
FAM21C   2650000 perm   3046 sec   (870 perm/sec)   p_kst 3.162264e-04   p_cons 4.741453e-01   p_joint 2.856604e-04

Joint ci ratio: 1.423605e-01	ci left: 2.646746e-04	ci right 3.055991e-04	k: 757	n:2660000
Cons ci ratio: 2.531117e-03	ci left: 4.735565e-01	ci right 4.747570e-01	k: 1261257	n:2660000
KS ci ratio: 1.353121e-01	ci left: 2.940690e-04	ci right 3.371062e-04	k: 838	n:2660000
FAM21C   2660000 perm   3067 sec   (867 perm/sec)   p_kst 3.150376e-04   p_cons 4.741568e-01   p_joint 2.845865e-04

Joint ci ratio: 1.422667e-01	ci left: 2.640445e-04	ci right 3.048424e-04	k: 758	n:2670000
Cons ci ratio: 2.526341e-03	ci left: 4.735638e-01	ci right 4.747621e-01	k: 1266015	n:2670000
KS ci ratio: 1.351511e-01	ci left: 2.936914e-04	ci right 3.366181e-04	k: 840	n:2670000
FAM21C   2670000 perm   3089 sec   (864 perm/sec)   p_kst 3.146067e-04   p_cons 4.741629e-01   p_joint 2.838951e-04

Joint ci ratio: 1.418933e-01	ci left: 2.644988e-04	ci right 3.052505e-04	k: 762	n:2680000
Cons ci ratio: 2.521681e-03	ci left: 4.735535e-01	ci right 4.747495e-01	k: 1270726	n:2680000
KS ci ratio: 1.346715e-01	ci left: 2.947587e-04	ci right 3.376763e-04	k: 846	n:2680000
FAM21C   2680000 perm   3110 sec   (862 perm/sec)   p_kst 3.156716e-04   p_cons 4.741515e-01   p_joint 2.843284e-04

Joint ci ratio: 1.415228e-01	ci left: 2.649498e-04	ci right 3.056554e-04	k: 766	n:2690000
Cons ci ratio: 2.516803e-03	ci left: 4.735916e-01	ci right 4.747854e-01	k: 1275567	n:2690000
KS ci ratio: 1.345128e-01	ci left: 2.943814e-04	ci right 3.371895e-04	k: 848	n:2690000
FAM21C   2690000 perm   3131 sec   (859 perm/sec)   p_kst 3.152416e-04   p_cons 4.741885e-01   p_joint 2.847584e-04

Joint ci ratio: 1.355550e-01	ci left: 2.886389e-04	ci right 3.309634e-04	k: 835	n:2700000
Cons ci ratio: 2.511878e-03	ci left: 4.736442e-01	ci right 4.748358e-01	k: 1280448	n:2700000
KS ci ratio: 1.338834e-01	ci left: 2.961546e-04	ci right 3.390030e-04	k: 856	n:2700000
FAM21C   2700000 perm   3152 sec   (857 perm/sec)   p_kst 3.170370e-04   p_cons 4.742400e-01   p_joint 3.092593e-04

Joint ci ratio: 1.351514e-01	ci left: 2.893564e-04	ci right 3.316496e-04	k: 840	n:2710000
Cons ci ratio: 2.507187e-03	ci left: 4.736559e-01	ci right 4.748453e-01	k: 1285219	n:2710000
KS ci ratio: 1.337275e-01	ci left: 2.957751e-04	ci right 3.385148e-04	k: 858	n:2710000
FAM21C   2710000 perm   3174 sec   (854 perm/sec)   p_kst 3.166052e-04   p_cons 4.742506e-01   p_joint 3.099631e-04

Joint ci ratio: 1.349110e-01	ci left: 2.893583e-04	ci right 3.315705e-04	k: 843	n:2720000
Cons ci ratio: 2.502753e-03	ci left: 4.736211e-01	ci right 4.748083e-01	k: 1289864	n:2720000
KS ci ratio: 1.336497e-01	ci left: 2.950431e-04	ci right 3.376502e-04	k: 859	n:2720000
FAM21C   2720000 perm   3195 sec   (851 perm/sec)   p_kst 3.158088e-04   p_cons 4.742147e-01   p_joint 3.099265e-04

Joint ci ratio: 1.347515e-01	ci left: 2.890062e-04	ci right 3.311132e-04	k: 845	n:2730000
Cons ci ratio: 2.498122e-03	ci left: 4.736310e-01	ci right 4.748160e-01	k: 1294630	n:2730000
KS ci ratio: 1.334946e-01	ci left: 2.946704e-04	ci right 3.371705e-04	k: 861	n:2730000
FAM21C   2730000 perm   3217 sec   (849 perm/sec)   p_kst 3.153846e-04   p_cons 4.742234e-01   p_joint 3.095238e-04

Joint ci ratio: 1.345132e-01	ci left: 2.890095e-04	ci right 3.310365e-04	k: 848	n:2740000
Cons ci ratio: 2.493716e-03	ci left: 4.736006e-01	ci right 4.747834e-01	k: 1299286	n:2740000
KS ci ratio: 1.333401e-01	ci left: 2.943006e-04	ci right 3.366942e-04	k: 863	n:2740000
FAM21C   2740000 perm   3238 sec   (846 perm/sec)   p_kst 3.149635e-04   p_cons 4.741920e-01   p_joint 3.094891e-04

Joint ci ratio: 1.341188e-01	ci left: 2.897156e-04	ci right 3.317120e-04	k: 853	n:2750000
Cons ci ratio: 2.489229e-03	ci left: 4.735915e-01	ci right 4.747722e-01	k: 1304000	n:2750000
KS ci ratio: 1.331092e-01	ci left: 2.942849e-04	ci right 3.365971e-04	k: 866	n:2750000
FAM21C   2750000 perm   3260 sec   (843 perm/sec)   p_kst 3.149091e-04   p_cons 4.741818e-01   p_joint 3.101818e-04

Joint ci ratio: 1.338058e-01	ci left: 2.900666e-04	ci right 3.320079e-04	k: 857	n:2760000
Cons ci ratio: 2.484592e-03	ci left: 4.736173e-01	ci right 4.747958e-01	k: 1308810	n:2760000
KS ci ratio: 1.329559e-01	ci left: 2.939192e-04	ci right 3.361263e-04	k: 868	n:2760000
FAM21C   2760000 perm   3282 sec   (841 perm/sec)   p_kst 3.144928e-04   p_cons 4.742065e-01   p_joint 3.105072e-04

Joint ci ratio: 1.335725e-01	ci left: 2.900663e-04	ci right 3.319286e-04	k: 860	n:2770000
Cons ci ratio: 2.480157e-03	ci left: 4.736075e-01	ci right 4.747839e-01	k: 1313522	n:2770000
KS ci ratio: 1.328032e-01	ci left: 2.935561e-04	ci right 3.356589e-04	k: 870	n:2770000
FAM21C   2770000 perm   3304 sec   (838 perm/sec)   p_kst 3.140794e-04   p_cons 4.741957e-01   p_joint 3.104693e-04

Joint ci ratio: 1.334176e-01	ci left: 2.897183e-04	ci right 3.314780e-04	k: 862	n:2780000
Cons ci ratio: 2.475750e-03	ci left: 4.735970e-01	ci right 4.747713e-01	k: 1318232	n:2780000
KS ci ratio: 1.325751e-01	ci left: 2.935435e-04	ci right 3.355664e-04	k: 873	n:2780000
FAM21C   2780000 perm   3325 sec   (836 perm/sec)   p_kst 3.140288e-04   p_cons 4.741842e-01   p_joint 3.100719e-04

Joint ci ratio: 1.331863e-01	ci left: 2.897193e-04	ci right 3.314011e-04	k: 865	n:2790000
Cons ci ratio: 2.471333e-03	ci left: 4.735931e-01	ci right 4.747653e-01	k: 1322960	n:2790000
KS ci ratio: 1.323482e-01	ci left: 2.935310e-04	ci right 3.354745e-04	k: 876	n:2790000
FAM21C   2790000 perm   3347 sec   (834 perm/sec)   p_kst 3.139785e-04   p_cons 4.741792e-01   p_joint 3.100358e-04

Joint ci ratio: 1.330328e-01	ci left: 2.893750e-04	ci right 3.309555e-04	k: 867	n:2800000
Cons ci ratio: 2.466762e-03	ci left: 4.736253e-01	ci right 4.747954e-01	k: 1327789	n:2800000
KS ci ratio: 1.321224e-01	ci left: 2.935187e-04	ci right 3.353833e-04	k: 879	n:2800000
FAM21C   2800000 perm   3369 sec   (831 perm/sec)   p_kst 3.139286e-04   p_cons 4.742104e-01   p_joint 3.096429e-04

Joint ci ratio: 1.329563e-01	ci left: 2.886893e-04	ci right 3.301455e-04	k: 868	n:2810000
Cons ci ratio: 2.462238e-03	ci left: 4.736530e-01	ci right 4.748210e-01	k: 1332606	n:2810000
KS ci ratio: 1.318231e-01	ci left: 2.938506e-04	ci right 3.356602e-04	k: 883	n:2810000
FAM21C   2810000 perm   3391 sec   (829 perm/sec)   p_kst 3.142349e-04   p_cons 4.742370e-01   p_joint 3.088968e-04

Joint ci ratio: 1.328036e-01	ci left: 2.883512e-04	ci right 3.297075e-04	k: 870	n:2820000
Cons ci ratio: 2.457902e-03	ci left: 4.736472e-01	ci right 4.748131e-01	k: 1337329	n:2820000
KS ci ratio: 1.313042e-01	ci left: 2.952092e-04	ci right 3.370338e-04	k: 890	n:2820000
FAM21C   2820000 perm   3413 sec   (826 perm/sec)   p_kst 3.156028e-04   p_cons 4.742301e-01   p_joint 3.085106e-04

Joint ci ratio: 1.328037e-01	ci left: 2.873323e-04	ci right 3.285425e-04	k: 870	n:2830000
Cons ci ratio: 2.453556e-03	ci left: 4.736481e-01	ci right 4.748120e-01	k: 1342071	n:2830000
KS ci ratio: 1.312306e-01	ci left: 2.945078e-04	ci right 3.362078e-04	k: 891	n:2830000
FAM21C   2830000 perm   3436 sec   (824 perm/sec)   p_kst 3.148410e-04   p_cons 4.742300e-01   p_joint 3.074205e-04

Joint ci ratio: 1.327275e-01	ci left: 2.866609e-04	ci right 3.277495e-04	k: 871	n:2840000
Cons ci ratio: 2.449141e-03	ci left: 4.736677e-01	ci right 4.748295e-01	k: 1346866	n:2840000
KS ci ratio: 1.310105e-01	ci left: 2.944925e-04	ci right 3.361150e-04	k: 894	n:2840000
FAM21C   2840000 perm   3458 sec   (821 perm/sec)   p_kst 3.147887e-04   p_cons 4.742486e-01   p_joint 3.066901e-04

Joint ci ratio: 1.324998e-01	ci left: 2.866728e-04	ci right 3.276870e-04	k: 874	n:2850000
Cons ci ratio: 2.444861e-03	ci left: 4.736647e-01	ci right 4.748245e-01	k: 1351597	n:2850000
KS ci ratio: 1.306460e-01	ci left: 2.951561e-04	ci right 3.367474e-04	k: 899	n:2850000
FAM21C   2850000 perm   3480 sec   (819 perm/sec)   p_kst 3.154386e-04   p_cons 4.742446e-01   p_joint 3.066667e-04

Joint ci ratio: 1.324242e-01	ci left: 2.860085e-04	ci right 3.269025e-04	k: 875	n:2860000
Cons ci ratio: 2.440666e-03	ci left: 4.736488e-01	ci right 4.748065e-01	k: 1356291	n:2860000
KS ci ratio: 1.305735e-01	ci left: 2.944623e-04	ci right 3.359310e-04	k: 900	n:2860000
FAM21C   2860000 perm   3503 sec   (816 perm/sec)   p_kst 3.146853e-04   p_cons 4.742276e-01   p_joint 3.059441e-04

Joint ci ratio: 1.321229e-01	ci left: 2.863596e-04	ci right 3.272033e-04	k: 879	n:2870000
Cons ci ratio: 2.436332e-03	ci left: 4.736657e-01	ci right 4.748215e-01	k: 1361079	n:2870000
KS ci ratio: 1.302127e-01	ci left: 2.951217e-04	ci right 3.365595e-04	k: 905	n:2870000
FAM21C   2870000 perm   3525 sec   (814 perm/sec)   p_kst 3.153310e-04   p_cons 4.742436e-01   p_joint 3.062718e-04

Joint ci ratio: 1.319730e-01	ci left: 2.860368e-04	ci right 3.267845e-04	k: 881	n:2880000
Cons ci ratio: 2.432333e-03	ci left: 4.736186e-01	ci right 4.747724e-01	k: 1365683	n:2880000
KS ci ratio: 1.300692e-01	ci left: 2.947688e-04	ci right 3.361079e-04	k: 907	n:2880000
FAM21C   2880000 perm   3548 sec   (812 perm/sec)   p_kst 3.149306e-04   p_cons 4.741955e-01   p_joint 3.059028e-04

Joint ci ratio: 1.317492e-01	ci left: 2.860509e-04	ci right 3.267261e-04	k: 884	n:2890000
Cons ci ratio: 2.428264e-03	ci left: 4.735903e-01	ci right 4.747420e-01	k: 1370340	n:2890000
KS ci ratio: 1.297837e-01	ci left: 2.950879e-04	ci right 3.363740e-04	k: 911	n:2890000
FAM21C   2890000 perm   3571 sec   (809 perm/sec)   p_kst 3.152249e-04   p_cons 4.741661e-01   p_joint 3.058824e-04

Joint ci ratio: 1.236927e-01	ci left: 3.247896e-04	ci right 3.679425e-04	k: 1003	n:2900000
Cons ci ratio: 2.424082e-03	ci left: 4.735896e-01	ci right 4.747394e-01	k: 1375077	n:2900000
KS ci ratio: 1.290778e-01	ci left: 2.974070e-04	ci right 3.387739e-04	k: 921	n:2900000
FAM21C   2900000 perm   3593 sec   (807 perm/sec)   p_kst 3.175862e-04   p_cons 4.741645e-01   p_joint 3.458621e-04

Joint ci ratio: 1.310842e-01	ci left: 2.870760e-04	ci right 3.276749e-04	k: 893	n:2910000
Cons ci ratio: 2.419756e-03	ci left: 4.736231e-01	ci right 4.747708e-01	k: 1379913	n:2910000
KS ci ratio: 1.288683e-01	ci left: 2.973827e-04	ci right 3.386739e-04	k: 924	n:2910000
FAM21C   2910000 perm   3615 sec   (805 perm/sec)   p_kst 3.175258e-04   p_cons 4.741969e-01   p_joint 3.068729e-04

Joint ci ratio: 1.307192e-01	ci left: 2.877491e-04	ci right 3.283211e-04	k: 898	n:2920000
Cons ci ratio: 2.415635e-03	ci left: 4.736186e-01	ci right 4.747644e-01	k: 1384639	n:2920000
KS ci ratio: 1.285905e-01	ci left: 2.976900e-04	ci right 3.389280e-04	k: 928	n:2920000
FAM21C   2920000 perm   3638 sec   (803 perm/sec)   p_kst 3.178082e-04   p_cons 4.741914e-01   p_joint 3.075342e-04

Joint ci ratio: 1.304293e-01	ci left: 2.880876e-04	ci right 3.286103e-04	k: 902	n:2930000
Cons ci ratio: 2.411465e-03	ci left: 4.736288e-01	ci right 4.747726e-01	k: 1389408	n:2930000
KS ci ratio: 1.283146e-01	ci left: 2.979953e-04	ci right 3.391803e-04	k: 932	n:2930000
FAM21C   2930000 perm   3660 sec   (801 perm/sec)   p_kst 3.180887e-04   p_cons 4.742007e-01   p_joint 3.078498e-04

Joint ci ratio: 1.301414e-01	ci left: 2.884240e-04	ci right 3.288974e-04	k: 906	n:2940000
Cons ci ratio: 2.407444e-03	ci left: 4.736124e-01	ci right 4.747543e-01	k: 1394099	n:2940000
KS ci ratio: 1.281773e-01	ci left: 2.976402e-04	ci right 3.387287e-04	k: 934	n:2940000
FAM21C   2940000 perm   3683 sec   (798 perm/sec)   p_kst 3.176871e-04   p_cons 4.741833e-01   p_joint 3.081633e-04

Joint ci ratio: 1.300697e-01	ci left: 2.877742e-04	ci right 3.281326e-04	k: 907	n:2950000
Cons ci ratio: 2.403332e-03	ci left: 4.736192e-01	ci right 4.747592e-01	k: 1398858	n:2950000
KS ci ratio: 1.281089e-01	ci left: 2.969593e-04	ci right 3.379303e-04	k: 935	n:2950000
FAM21C   2950000 perm   3706 sec   (796 perm/sec)   p_kst 3.169492e-04   p_cons 4.741892e-01   p_joint 3.074576e-04

Joint ci ratio: 1.223593e-01	ci left: 3.254098e-04	ci right 3.681452e-04	k: 1025	n:2960000
Cons ci ratio: 2.399295e-03	ci left: 4.736148e-01	ci right 4.747528e-01	k: 1403584	n:2960000
KS ci ratio: 1.278360e-01	ci left: 2.972642e-04	ci right 3.381832e-04	k: 939	n:2960000
FAM21C   2960000 perm   3729 sec   (794 perm/sec)   p_kst 3.172297e-04   p_cons 4.741838e-01   p_joint 3.462838e-04

Joint ci ratio: 1.222403e-01	ci left: 3.249669e-04	ci right 3.675997e-04	k: 1027	n:2970000
Cons ci ratio: 2.395129e-03	ci left: 4.736414e-01	ci right 4.747775e-01	k: 1408402	n:2970000
KS ci ratio: 1.277002e-01	ci left: 2.969152e-04	ci right 3.377395e-04	k: 941	n:2970000
FAM21C   2970000 perm   3752 sec   (792 perm/sec)   p_kst 3.168350e-04   p_cons 4.742094e-01   p_joint 3.457912e-04

Joint ci ratio: 1.220031e-01	ci left: 3.251777e-04	ci right 3.677494e-04	k: 1031	n:2980000
Cons ci ratio: 2.391181e-03	ci left: 4.736269e-01	ci right 4.747611e-01	k: 1413098	n:2980000
KS ci ratio: 1.276325e-01	ci left: 2.962436e-04	ci right 3.369524e-04	k: 942	n:2980000
FAM21C   2980000 perm   3776 sec   (789 perm/sec)   p_kst 3.161074e-04   p_cons 4.741940e-01   p_joint 3.459732e-04

Joint ci ratio: 1.218851e-01	ci left: 3.247386e-04	ci right 3.672087e-04	k: 1033	n:2990000
Cons ci ratio: 2.387181e-03	ci left: 4.736275e-01	ci right 4.747598e-01	k: 1417839	n:2990000
KS ci ratio: 1.272955e-01	ci left: 2.968718e-04	ci right 3.375510e-04	k: 947	n:2990000
FAM21C   2990000 perm   3799 sec   (787 perm/sec)   p_kst 3.167224e-04   p_cons 4.741936e-01   p_joint 3.454849e-04

Joint ci ratio: 1.216500e-01	ci left: 3.249489e-04	ci right 3.673586e-04	k: 1037	n:3000000
Cons ci ratio: 2.383116e-03	ci left: 4.736458e-01	ci right 4.747762e-01	k: 1422633	n:3000000
KS ci ratio: 1.271614e-01	ci left: 2.965277e-04	ci right 3.371137e-04	k: 949	n:3000000
FAM21C   3000000 perm   3823 sec   (785 perm/sec)   p_kst 3.163333e-04   p_cons 4.742110e-01   p_joint 3.456667e-04

Joint ci ratio: 1.214746e-01	ci left: 3.248357e-04	ci right 3.671652e-04	k: 1040	n:3010000
Cons ci ratio: 2.379198e-03	ci left: 4.736374e-01	ci right 4.747660e-01	k: 1427347	n:3010000
KS ci ratio: 1.268281e-01	ci left: 2.971509e-04	ci right 3.377076e-04	k: 954	n:3010000
FAM21C   3010000 perm   3846 sec   (783 perm/sec)   p_kst 3.169435e-04   p_cons 4.742017e-01   p_joint 3.455150e-04

Joint ci ratio: 1.213000e-01	ci left: 3.247233e-04	ci right 3.669729e-04	k: 1043	n:3020000
Cons ci ratio: 2.375370e-03	ci left: 4.736145e-01	ci right 4.747412e-01	k: 1432017	n:3020000
KS ci ratio: 1.265633e-01	ci left: 2.974495e-04	ci right 3.379558e-04	k: 958	n:3020000
FAM21C   3020000 perm   3870 sec   (780 perm/sec)   p_kst 3.172185e-04   p_cons 4.741778e-01   p_joint 3.453642e-04

Joint ci ratio: 1.209528e-01	ci left: 3.255718e-04	ci right 3.678019e-04	k: 1049	n:3030000
Cons ci ratio: 2.371442e-03	ci left: 4.736165e-01	ci right 4.747413e-01	k: 1436762	n:3030000
KS ci ratio: 1.263001e-01	ci left: 2.977462e-04	ci right 3.382023e-04	k: 962	n:3030000
FAM21C   3030000 perm   3894 sec   (778 perm/sec)   p_kst 3.174917e-04   p_cons 4.741789e-01   p_joint 3.462046e-04

Joint ci ratio: 1.208378e-01	ci left: 3.251388e-04	ci right 3.672698e-04	k: 1051	n:3040000
Cons ci ratio: 2.367467e-03	ci left: 4.736323e-01	ci right 4.747552e-01	k: 1441549	n:3040000
KS ci ratio: 1.261039e-01	ci left: 2.977224e-04	ci right 3.381078e-04	k: 965	n:3040000
FAM21C   3040000 perm   3918 sec   (776 perm/sec)   p_kst 3.174342e-04   p_cons 4.741938e-01   p_joint 3.457237e-04

Joint ci ratio: 1.279728e-01	ci left: 2.878576e-04	ci right 3.275274e-04	k: 937	n:3050000
Cons ci ratio: 2.363518e-03	ci left: 4.736470e-01	ci right 4.747681e-01	k: 1446333	n:3050000
KS ci ratio: 1.257140e-01	ci left: 2.986516e-04	ci right 3.390284e-04	k: 971	n:3050000
FAM21C   3050000 perm   3942 sec   (774 perm/sec)   p_kst 3.183607e-04   p_cons 4.742075e-01   p_joint 3.072131e-04

Joint ci ratio: 1.204947e-01	ci left: 3.249154e-04	ci right 3.668893e-04	k: 1057	n:3060000
Cons ci ratio: 2.359529e-03	ci left: 4.736740e-01	ci right 4.747933e-01	k: 1451155	n:3060000
KS ci ratio: 1.255849e-01	ci left: 2.983086e-04	ci right 3.385946e-04	k: 973	n:3060000
FAM21C   3060000 perm   3965 sec   (772 perm/sec)   p_kst 3.179739e-04   p_cons 4.742337e-01   p_joint 3.454248e-04

Joint ci ratio: 1.277687e-01	ci left: 2.869282e-04	ci right 3.264022e-04	k: 940	n:3070000
Cons ci ratio: 2.355633e-03	ci left: 4.736856e-01	ci right 4.748030e-01	k: 1455930	n:3070000
KS ci ratio: 1.254562e-01	ci left: 2.979679e-04	ci right 3.381636e-04	k: 975	n:3070000
FAM21C   3070000 perm   3989 sec   (770 perm/sec)   p_kst 3.175896e-04   p_cons 4.742443e-01   p_joint 3.061889e-04

Joint ci ratio: 1.277009e-01	ci left: 2.863109e-04	ci right 3.256775e-04	k: 941	n:3080000
Cons ci ratio: 2.351814e-03	ci left: 4.736847e-01	ci right 4.748004e-01	k: 1460667	n:3080000
KS ci ratio: 1.253279e-01	ci left: 2.976295e-04	ci right 3.377353e-04	k: 977	n:3080000
FAM21C   3080000 perm   4013 sec   (767 perm/sec)   p_kst 3.172078e-04   p_cons 4.742425e-01   p_joint 3.055195e-04

Joint ci ratio: 1.275656e-01	ci left: 2.860110e-04	ci right 3.252914e-04	k: 943	n:3090000
Cons ci ratio: 2.347940e-03	ci left: 4.736994e-01	ci right 4.748132e-01	k: 1465452	n:3090000
KS ci ratio: 1.251999e-01	ci left: 2.972932e-04	ci right 3.373099e-04	k: 979	n:3090000
FAM21C   3090000 perm   4036 sec   (766 perm/sec)   p_kst 3.168285e-04   p_cons 4.742563e-01   p_joint 3.051780e-04

Joint ci ratio: 1.273634e-01	ci left: 2.860252e-04	ci right 3.252407e-04	k: 946	n:3100000
Cons ci ratio: 2.344219e-03	ci left: 4.736856e-01	ci right 4.747977e-01	k: 1470149	n:3100000
KS ci ratio: 1.250087e-01	ci left: 2.972717e-04	ci right 3.372198e-04	k: 982	n:3100000
FAM21C   3100000 perm   4061 sec   (763 perm/sec)   p_kst 3.167742e-04   p_cons 4.742416e-01   p_joint 3.051613e-04

Joint ci ratio: 1.272291e-01	ci left: 2.857281e-04	ci right 3.248584e-04	k: 948	n:3110000
Cons ci ratio: 2.340386e-03	ci left: 4.736996e-01	ci right 4.748098e-01	k: 1474932	n:3110000
KS ci ratio: 1.248184e-01	ci left: 2.972503e-04	ci right 3.371302e-04	k: 985	n:3110000
FAM21C   3110000 perm   4085 sec   (761 perm/sec)   p_kst 3.167203e-04   p_cons 4.742547e-01   p_joint 3.048232e-04

Joint ci ratio: 1.270953e-01	ci left: 2.854330e-04	ci right 3.244786e-04	k: 950	n:3120000
Cons ci ratio: 2.336604e-03	ci left: 4.737067e-01	ci right 4.748152e-01	k: 1479694	n:3120000
KS ci ratio: 1.246920e-01	ci left: 2.969186e-04	ci right 3.367107e-04	k: 987	n:3120000
FAM21C   3120000 perm   4109 sec   (759 perm/sec)   p_kst 3.163462e-04   p_cons 4.742609e-01   p_joint 3.044872e-04

Joint ci ratio: 1.268953e-01	ci left: 2.854491e-04	ci right 3.244309e-04	k: 953	n:3130000
Cons ci ratio: 2.332781e-03	ci left: 4.737262e-01	ci right 4.748329e-01	k: 1484495	n:3130000
KS ci ratio: 1.243151e-01	ci left: 2.978272e-04	ci right 3.376116e-04	k: 993	n:3130000
FAM21C   3130000 perm   4133 sec   (757 perm/sec)   p_kst 3.172524e-04   p_cons 4.742796e-01   p_joint 3.044728e-04

Joint ci ratio: 1.268954e-01	ci left: 2.845400e-04	ci right 3.233976e-04	k: 953	n:3140000
Cons ci ratio: 2.329045e-03	ci left: 4.737310e-01	ci right 4.748359e-01	k: 1489250	n:3140000
KS ci ratio: 1.242526e-01	ci left: 2.971873e-04	ci right 3.368647e-04	k: 994	n:3140000
FAM21C   3140000 perm   4157 sec   (755 perm/sec)   p_kst 3.165605e-04   p_cons 4.742834e-01   p_joint 3.035032e-04

Joint ci ratio: 1.268954e-01	ci left: 2.836367e-04	ci right 3.223710e-04	k: 953	n:3150000
Cons ci ratio: 2.325259e-03	ci left: 4.737503e-01	ci right 4.748535e-01	k: 1494051	n:3150000
KS ci ratio: 1.241280e-01	ci left: 2.968590e-04	ci right 3.364500e-04	k: 996	n:3150000
FAM21C   3150000 perm   4182 sec   (753 perm/sec)   p_kst 3.161905e-04   p_cons 4.743019e-01   p_joint 3.025397e-04

Joint ci ratio: 1.268290e-01	ci left: 2.830455e-04	ci right 3.216773e-04	k: 954	n:3160000
Cons ci ratio: 2.321446e-03	ci left: 4.737794e-01	ci right 4.748808e-01	k: 1498883	n:3160000
KS ci ratio: 1.240658e-01	ci left: 2.962262e-04	ci right 3.357115e-04	k: 997	n:3160000
FAM21C   3160000 perm   4206 sec   (751 perm/sec)   p_kst 3.155063e-04   p_cons 4.743301e-01   p_joint 3.018987e-04

Joint ci ratio: 1.266303e-01	ci left: 2.830690e-04	ci right 3.216389e-04	k: 957	n:3170000
Cons ci ratio: 2.317836e-03	ci left: 4.737685e-01	ci right 4.748682e-01	k: 1503589	n:3170000
KS ci ratio: 1.238179e-01	ci left: 2.965145e-04	ci right 3.359534e-04	k: 1001	n:3170000
FAM21C   3170000 perm   4231 sec   (749 perm/sec)   p_kst 3.157729e-04   p_cons 4.743183e-01   p_joint 3.018927e-04

Joint ci ratio: 1.264325e-01	ci left: 2.830924e-04	ci right 3.216007e-04	k: 960	n:3180000
Cons ci ratio: 2.314142e-03	ci left: 4.737793e-01	ci right 4.748773e-01	k: 1508364	n:3180000
KS ci ratio: 1.235715e-01	ci left: 2.968010e-04	ci right 3.361937e-04	k: 1005	n:3180000
FAM21C   3180000 perm   4256 sec   (747 perm/sec)   p_kst 3.160377e-04   p_cons 4.743283e-01   p_joint 3.018868e-04

Joint ci ratio: 1.260396e-01	ci left: 2.840264e-04	ci right 3.225328e-04	k: 966	n:3190000
Cons ci ratio: 2.310585e-03	ci left: 4.737644e-01	ci right 4.748607e-01	k: 1513057	n:3190000
KS ci ratio: 1.232046e-01	ci left: 2.976934e-04	ci right 3.370787e-04	k: 1011	n:3190000
FAM21C   3190000 perm   4280 sec   (745 perm/sec)   p_kst 3.169279e-04   p_cons 4.743125e-01   p_joint 3.028213e-04

Joint ci ratio: 1.259095e-01	ci left: 2.837441e-04	ci right 3.221696e-04	k: 968	n:3200000
Cons ci ratio: 2.306880e-03	ci left: 4.737853e-01	ci right 4.748798e-01	k: 1517864	n:3200000
KS ci ratio: 1.230224e-01	ci left: 2.976718e-04	ci right 3.369917e-04	k: 1014	n:3200000
FAM21C   3200000 perm   4306 sec   (743 perm/sec)   p_kst 3.168750e-04   p_cons 4.743325e-01   p_joint 3.025000e-04

Joint ci ratio: 1.259095e-01	ci left: 2.828602e-04	ci right 3.211660e-04	k: 968	n:3210000
Cons ci ratio: 2.303280e-03	ci left: 4.737869e-01	ci right 4.748798e-01	k: 1522610	n:3210000
KS ci ratio: 1.228410e-01	ci left: 2.976503e-04	ci right 3.369052e-04	k: 1017	n:3210000
FAM21C   3210000 perm   4330 sec   (741 perm/sec)   p_kst 3.168224e-04   p_cons 4.743333e-01   p_joint 3.015576e-04

Joint ci ratio: 1.309398e-01	ci left: 2.600388e-04	ci right 2.967703e-04	k: 895	n:3220000
Cons ci ratio: 2.299850e-03	ci left: 4.737554e-01	ci right 4.748465e-01	k: 1527249	n:3220000
KS ci ratio: 1.227205e-01	ci left: 2.973279e-04	ci right 3.364991e-04	k: 1019	n:3220000
FAM21C   3220000 perm   4355 sec   (739 perm/sec)   p_kst 3.164596e-04   p_cons 4.743009e-01   p_joint 2.779503e-04

Joint ci ratio: 1.307211e-01	ci left: 2.601321e-04	ci right 2.968107e-04	k: 898	n:3230000
Cons ci ratio: 2.296300e-03	ci left: 4.737535e-01	ci right 4.748429e-01	k: 1531983	n:3230000
KS ci ratio: 1.226004e-01	ci left: 2.970076e-04	ci right 3.360955e-04	k: 1021	n:3230000
FAM21C   3230000 perm   4381 sec   (737 perm/sec)   p_kst 3.160991e-04   p_cons 4.742981e-01   p_joint 2.780186e-04

Joint ci ratio: 1.305035e-01	ci left: 2.602249e-04	ci right 2.968508e-04	k: 901	n:3240000
Cons ci ratio: 2.292782e-03	ci left: 4.737481e-01	ci right 4.748359e-01	k: 1536706	n:3240000
KS ci ratio: 1.224208e-01	ci left: 2.969885e-04	ci right 3.360124e-04	k: 1024	n:3240000
FAM21C   3240000 perm   4406 sec   (735 perm/sec)   p_kst 3.160494e-04   p_cons 4.742920e-01   p_joint 2.780864e-04

Joint ci ratio: 1.302151e-01	ci left: 2.606148e-04	ci right 2.972083e-04	k: 905	n:3250000
Cons ci ratio: 2.289394e-03	ci left: 4.737179e-01	ci right 4.748040e-01	k: 1541348	n:3250000
KS ci ratio: 1.221827e-01	ci left: 2.972678e-04	ci right 3.362470e-04	k: 1028	n:3250000
FAM21C   3250000 perm   4432 sec   (733 perm/sec)   p_kst 3.163077e-04   p_cons 4.742609e-01   p_joint 2.784615e-04

Joint ci ratio: 1.302152e-01	ci left: 2.598154e-04	ci right 2.962966e-04	k: 905	n:3260000
Cons ci ratio: 2.285824e-03	ci left: 4.737311e-01	ci right 4.748155e-01	k: 1546131	n:3260000
KS ci ratio: 1.220641e-01	ci left: 2.969507e-04	ci right 3.358478e-04	k: 1030	n:3260000
FAM21C   3260000 perm   4457 sec   (731 perm/sec)   p_kst 3.159509e-04   p_cons 4.742733e-01   p_joint 2.776074e-04

Joint ci ratio: 1.300717e-01	ci left: 2.596126e-04	ci right 2.960220e-04	k: 907	n:3270000
Cons ci ratio: 2.282213e-03	ci left: 4.737565e-01	ci right 4.748392e-01	k: 1550954	n:3270000
KS ci ratio: 1.217104e-01	ci left: 2.978215e-04	ci right 3.367115e-04	k: 1036	n:3270000
FAM21C   3270000 perm   4483 sec   (729 perm/sec)   p_kst 3.168196e-04   p_cons 4.742979e-01   p_joint 2.773700e-04

Joint ci ratio: 1.299287e-01	ci left: 2.594110e-04	ci right 2.957491e-04	k: 909	n:3280000
Cons ci ratio: 2.278825e-03	ci left: 4.737369e-01	ci right 4.748180e-01	k: 1555630	n:3280000
KS ci ratio: 1.215347e-01	ci left: 2.978003e-04	ci right 3.366274e-04	k: 1039	n:3280000
FAM21C   3280000 perm   4508 sec   (728 perm/sec)   p_kst 3.167683e-04   p_cons 4.742774e-01   p_joint 2.771341e-04

Joint ci ratio: 1.243786e-01	ci left: 2.830486e-04	ci right 3.208795e-04	k: 992	n:3290000
Cons ci ratio: 2.275370e-03	ci left: 4.737354e-01	ci right 4.748148e-01	k: 1560365	n:3290000
KS ci ratio: 1.213017e-01	ci left: 2.980740e-04	ci right 3.368569e-04	k: 1043	n:3290000
FAM21C   3290000 perm   4534 sec   (726 perm/sec)   p_kst 3.170213e-04   p_cons 4.742751e-01   p_joint 3.015198e-04

Joint ci ratio: 1.292908e-01	ci left: 2.604776e-04	ci right 2.967723e-04	k: 918	n:3300000
Cons ci ratio: 2.271979e-03	ci left: 4.737232e-01	ci right 4.748010e-01	k: 1565065	n:3300000
KS ci ratio: 1.208970e-01	ci left: 2.992277e-04	ci right 3.380215e-04	k: 1050	n:3300000
FAM21C   3300000 perm   4560 sec   (724 perm/sec)   p_kst 3.181818e-04   p_cons 4.742621e-01   p_joint 2.781818e-04

Joint ci ratio: 1.291504e-01	ci left: 2.602754e-04	ci right 2.964995e-04	k: 920	n:3310000
Cons ci ratio: 2.268555e-03	ci left: 4.737218e-01	ci right 4.747979e-01	k: 1569800	n:3310000
KS ci ratio: 1.208396e-01	ci left: 2.986167e-04	ci right 3.373116e-04	k: 1051	n:3310000
FAM21C   3310000 perm   4586 sec   (722 perm/sec)   p_kst 3.175227e-04   p_cons 4.742598e-01   p_joint 2.779456e-04

Joint ci ratio: 1.291505e-01	ci left: 2.594914e-04	ci right 2.956064e-04	k: 920	n:3320000
Cons ci ratio: 2.265143e-03	ci left: 4.737209e-01	ci right 4.747954e-01	k: 1574537	n:3320000
KS ci ratio: 1.206676e-01	ci left: 2.985936e-04	ci right 3.372265e-04	k: 1054	n:3320000
FAM21C   3320000 perm   4611 sec   (720 perm/sec)   p_kst 3.174699e-04   p_cons 4.742581e-01   p_joint 2.771084e-04

Joint ci ratio: 1.290804e-01	ci left: 2.590028e-04	ci right 2.950287e-04	k: 921	n:3330000
Cons ci ratio: 2.261708e-03	ci left: 4.737287e-01	ci right 4.748017e-01	k: 1579303	n:3330000
KS ci ratio: 1.205534e-01	ci left: 2.982794e-04	ci right 3.368325e-04	k: 1056	n:3330000
FAM21C   3330000 perm   4636 sec   (718 perm/sec)   p_kst 3.171171e-04   p_cons 4.742652e-01   p_joint 2.765766e-04

Joint ci ratio: 1.288013e-01	ci left: 2.593863e-04	ci right 2.953816e-04	k: 925	n:3340000
Cons ci ratio: 2.258311e-03	ci left: 4.737314e-01	ci right 4.748027e-01	k: 1584052	n:3340000
KS ci ratio: 1.201561e-01	ci left: 2.994190e-04	ci right 3.379829e-04	k: 1063	n:3340000
FAM21C   3340000 perm   4663 sec   (716 perm/sec)   p_kst 3.182635e-04   p_cons 4.742671e-01   p_joint 2.769461e-04

Joint ci ratio: 1.285932e-01	ci left: 2.594787e-04	ci right 2.954242e-04	k: 928	n:3350000
Cons ci ratio: 2.254947e-03	ci left: 4.737302e-01	ci right 4.748000e-01	k: 1588788	n:3350000
KS ci ratio: 1.199871e-01	ci left: 2.993939e-04	ci right 3.378964e-04	k: 1066	n:3350000
FAM21C   3350000 perm   4688 sec   (715 perm/sec)   p_kst 3.182090e-04   p_cons 4.742651e-01   p_joint 2.770149e-04

Joint ci ratio: 1.285241e-01	ci left: 2.589945e-04	ci right 2.948521e-04	k: 929	n:3360000
Cons ci ratio: 2.251755e-03	ci left: 4.736942e-01	ci right 4.747624e-01	k: 1593407	n:3360000
KS ci ratio: 1.199872e-01	ci left: 2.985028e-04	ci right 3.368907e-04	k: 1066	n:3360000
FAM21C   3360000 perm   4714 sec   (713 perm/sec)   p_kst 3.172619e-04   p_cons 4.742283e-01   p_joint 2.764881e-04

Joint ci ratio: 1.230840e-01	ci left: 2.823679e-04	ci right 3.196864e-04	k: 1013	n:3370000
Cons ci ratio: 2.248320e-03	ci left: 4.737154e-01	ci right 4.747820e-01	k: 1598218	n:3370000
KS ci ratio: 1.197629e-01	ci left: 2.987684e-04	ci right 3.371136e-04	k: 1070	n:3370000
FAM21C   3370000 perm   4740 sec   (711 perm/sec)   p_kst 3.175074e-04   p_cons 4.742487e-01   p_joint 3.005935e-04

Joint ci ratio: 1.227816e-01	ci left: 2.829663e-04	ci right 3.202654e-04	k: 1018	n:3380000
Cons ci ratio: 2.244909e-03	ci left: 4.737344e-01	ci right 4.747994e-01	k: 1603022	n:3380000
KS ci ratio: 1.195398e-01	ci left: 2.990325e-04	ci right 3.373350e-04	k: 1074	n:3380000
FAM21C   3380000 perm   4766 sec   (709 perm/sec)   p_kst 3.177515e-04   p_cons 4.742669e-01   p_joint 3.011834e-04

Joint ci ratio: 1.226613e-01	ci left: 2.827035e-04	ci right 3.199287e-04	k: 1020	n:3390000
Cons ci ratio: 2.241602e-03	ci left: 4.737338e-01	ci right 4.747972e-01	k: 1607760	n:3390000
KS ci ratio: 1.194288e-01	ci left: 2.987227e-04	ci right 3.369475e-04	k: 1076	n:3390000
FAM21C   3390000 perm   4792 sec   (707 perm/sec)   p_kst 3.174041e-04   p_cons 4.742655e-01   p_joint 3.008850e-04

Joint ci ratio: 1.275674e-01	ci left: 2.599333e-04	ci right 2.956328e-04	k: 943	n:3400000
Cons ci ratio: 2.238288e-03	ci left: 4.737379e-01	ci right 4.747998e-01	k: 1612514	n:3400000
KS ci ratio: 1.193735e-01	ci left: 2.981295e-04	ci right 3.362594e-04	k: 1077	n:3400000
FAM21C   3400000 perm   4818 sec   (706 perm/sec)   p_kst 3.167647e-04   p_cons 4.742688e-01   p_joint 2.773529e-04

Joint ci ratio: 1.271639e-01	ci left: 2.608745e-04	ci right 2.965814e-04	k: 949	n:3410000
Cons ci ratio: 2.235007e-03	ci left: 4.737379e-01	ci right 4.747982e-01	k: 1617254	n:3410000
KS ci ratio: 1.191526e-01	ci left: 2.983932e-04	ci right 3.364813e-04	k: 1081	n:3410000
FAM21C   3410000 perm   4845 sec   (704 perm/sec)   p_kst 3.170088e-04   p_cons 4.742680e-01   p_joint 2.782991e-04

Joint ci ratio: 1.270302e-01	ci left: 2.606779e-04	ci right 2.963175e-04	k: 951	n:3420000
Cons ci ratio: 2.231716e-03	ci left: 4.737435e-01	ci right 4.748022e-01	k: 1622013	n:3420000
KS ci ratio: 1.190976e-01	ci left: 2.978044e-04	ci right 3.357986e-04	k: 1082	n:3420000
FAM21C   3420000 perm   4871 sec   (702 perm/sec)   p_kst 3.163743e-04   p_cons 4.742728e-01   p_joint 2.780702e-04

Joint ci ratio: 1.268970e-01	ci left: 2.604825e-04	ci right 2.960552e-04	k: 953	n:3430000
Cons ci ratio: 2.228443e-03	ci left: 4.737481e-01	ci right 4.748053e-01	k: 1626769	n:3430000
KS ci ratio: 1.190427e-01	ci left: 2.972190e-04	ci right 3.351198e-04	k: 1083	n:3430000
FAM21C   3430000 perm   4897 sec   (700 perm/sec)   p_kst 3.157434e-04   p_cons 4.742767e-01   p_joint 2.778426e-04

Joint ci ratio: 1.266318e-01	ci left: 2.608512e-04	ci right 2.963943e-04	k: 957	n:3440000
Cons ci ratio: 2.225160e-03	ci left: 4.737583e-01	ci right 4.748139e-01	k: 1631544	n:3440000
KS ci ratio: 1.188236e-01	ci left: 2.974832e-04	ci right 3.353430e-04	k: 1087	n:3440000
FAM21C   3440000 perm   4923 sec   (699 perm/sec)   p_kst 3.159884e-04   p_cons 4.742860e-01   p_joint 2.781977e-04

Joint ci ratio: 1.266318e-01	ci left: 2.600951e-04	ci right 2.955351e-04	k: 957	n:3450000
Cons ci ratio: 2.221970e-03	ci left: 4.737507e-01	ci right 4.748048e-01	k: 1636258	n:3450000
KS ci ratio: 1.187691e-01	ci left: 2.969022e-04	ci right 3.346694e-04	k: 1088	n:3450000
FAM21C   3450000 perm   4950 sec   (697 perm/sec)   p_kst 3.153623e-04   p_cons 4.742777e-01   p_joint 2.773913e-04

Joint ci ratio: 1.264999e-01	ci left: 2.599031e-04	ci right 2.952773e-04	k: 959	n:3460000
Cons ci ratio: 2.218692e-03	ci left: 4.737659e-01	ci right 4.748185e-01	k: 1641051	n:3460000
KS ci ratio: 1.186059e-01	ci left: 2.968854e-04	ci right 3.345950e-04	k: 1091	n:3460000
FAM21C   3460000 perm   4977 sec   (695 perm/sec)   p_kst 3.153179e-04   p_cons 4.742922e-01   p_joint 2.771676e-04

Joint ci ratio: 1.260411e-01	ci left: 2.611077e-04	ci right 2.965073e-04	k: 966	n:3470000
Cons ci ratio: 2.215370e-03	ci left: 4.737944e-01	ci right 4.748454e-01	k: 1645890	n:3470000
KS ci ratio: 1.183352e-01	ci left: 2.974280e-04	ci right 3.351143e-04	k: 1096	n:3470000
FAM21C   3470000 perm   5002 sec   (694 perm/sec)   p_kst 3.158501e-04   p_cons 4.743199e-01   p_joint 2.783862e-04

Joint ci ratio: 1.259110e-01	ci left: 2.609139e-04	ci right 2.962481e-04	k: 968	n:3480000
Cons ci ratio: 2.212198e-03	ci left: 4.737922e-01	ci right 4.748418e-01	k: 1650623	n:3480000
KS ci ratio: 1.182814e-01	ci left: 2.968522e-04	ci right 3.344472e-04	k: 1097	n:3480000
FAM21C   3480000 perm   5028 sec   (692 perm/sec)   p_kst 3.152299e-04   p_cons 4.743170e-01   p_joint 2.781609e-04

Joint ci ratio: 1.258461e-01	ci left: 2.604439e-04	ci right 2.956948e-04	k: 969	n:3490000
Cons ci ratio: 2.208950e-03	ci left: 4.738101e-01	ci right 4.748581e-01	k: 1655426	n:3490000
KS ci ratio: 1.182276e-01	ci left: 2.962797e-04	ci right 3.337839e-04	k: 1098	n:3490000
FAM21C   3490000 perm   5055 sec   (690 perm/sec)   p_kst 3.146132e-04   p_cons 4.743341e-01   p_joint 2.776504e-04

Joint ci ratio: 1.257166e-01	ci left: 2.602532e-04	ci right 2.954394e-04	k: 971	n:3500000
Cons ci ratio: 2.205799e-03	ci left: 4.738093e-01	ci right 4.748559e-01	k: 1660164	n:3500000
KS ci ratio: 1.182276e-01	ci left: 2.954332e-04	ci right 3.328302e-04	k: 1098	n:3500000
FAM21C   3500000 perm   5081 sec   (689 perm/sec)   p_kst 3.137143e-04   p_cons 4.743326e-01   p_joint 2.774286e-04

Joint ci ratio: 1.255875e-01	ci left: 2.600636e-04	ci right 2.951854e-04	k: 973	n:3510000
Cons ci ratio: 2.202659e-03	ci left: 4.738091e-01	ci right 4.748542e-01	k: 1664904	n:3510000
KS ci ratio: 1.180666e-01	ci left: 2.954209e-04	ci right 3.327620e-04	k: 1101	n:3510000
FAM21C   3510000 perm   5109 sec   (687 perm/sec)   p_kst 3.136752e-04   p_cons 4.743316e-01   p_joint 2.772080e-04

Joint ci ratio: 1.254587e-01	ci left: 2.598751e-04	ci right 2.949328e-04	k: 975	n:3520000
Cons ci ratio: 2.199509e-03	ci left: 4.738140e-01	ci right 4.748576e-01	k: 1669662	n:3520000
KS ci ratio: 1.179062e-01	ci left: 2.954088e-04	ci right 3.326940e-04	k: 1104	n:3520000
FAM21C   3520000 perm   5135 sec   (685 perm/sec)   p_kst 3.136364e-04   p_cons 4.743358e-01   p_joint 2.769886e-04

Joint ci ratio: 1.253304e-01	ci left: 2.596877e-04	ci right 2.946816e-04	k: 977	n:3530000
Cons ci ratio: 2.196385e-03	ci left: 4.738164e-01	ci right 4.748585e-01	k: 1674411	n:3530000
KS ci ratio: 1.176934e-01	ci left: 2.956717e-04	ci right 3.329181e-04	k: 1108	n:3530000
FAM21C   3530000 perm   5162 sec   (684 perm/sec)   p_kst 3.138810e-04   p_cons 4.743374e-01   p_joint 2.767705e-04

Joint ci ratio: 1.252664e-01	ci left: 2.592278e-04	ci right 2.941406e-04	k: 978	n:3540000
Cons ci ratio: 2.193305e-03	ci left: 4.738114e-01	ci right 4.748520e-01	k: 1679134	n:3540000
KS ci ratio: 1.175874e-01	ci left: 2.953848e-04	ci right 3.325592e-04	k: 1110	n:3540000
FAM21C   3540000 perm   5190 sec   (682 perm/sec)   p_kst 3.135593e-04   p_cons 4.743316e-01   p_joint 2.762712e-04

Joint ci ratio: 1.252025e-01	ci left: 2.587704e-04	ci right 2.936025e-04	k: 979	n:3550000
Cons ci ratio: 2.190307e-03	ci left: 4.737909e-01	ci right 4.748300e-01	k: 1683802	n:3550000
KS ci ratio: 1.174817e-01	ci left: 2.950995e-04	ci right 3.322024e-04	k: 1112	n:3550000
FAM21C   3550000 perm   5217 sec   (680 perm/sec)   p_kst 3.132394e-04   p_cons 4.743104e-01   p_joint 2.757746e-04

Joint ci ratio: 1.250113e-01	ci left: 2.588599e-04	ci right 2.936468e-04	k: 982	n:3560000
Cons ci ratio: 2.187236e-03	ci left: 4.737899e-01	ci right 4.748276e-01	k: 1688539	n:3560000
KS ci ratio: 1.171663e-01	ci left: 2.959065e-04	ci right 3.330040e-04	k: 1118	n:3560000
FAM21C   3560000 perm   5245 sec   (679 perm/sec)   p_kst 3.140449e-04   p_cons 4.743087e-01   p_joint 2.758427e-04

Joint ci ratio: 1.248843e-01	ci left: 2.586775e-04	ci right 2.934020e-04	k: 984	n:3570000
Cons ci ratio: 2.184218e-03	ci left: 4.737799e-01	ci right 4.748162e-01	k: 1693244	n:3570000
KS ci ratio: 1.170096e-01	ci left: 2.958934e-04	ci right 3.329362e-04	k: 1121	n:3570000
FAM21C   3570000 perm   5272 sec   (677 perm/sec)   p_kst 3.140056e-04   p_cons 4.742980e-01   p_joint 2.756303e-04

Joint ci ratio: 1.243176e-01	ci left: 2.603905e-04	ci right 2.951747e-04	k: 993	n:3580000
Cons ci ratio: 2.181178e-03	ci left: 4.737776e-01	ci right 4.748124e-01	k: 1697976	n:3580000
KS ci ratio: 1.167497e-01	ci left: 2.964227e-04	ci right 3.334437e-04	k: 1126	n:3580000
FAM21C   3580000 perm   5300 sec   (676 perm/sec)   p_kst 3.145251e-04   p_cons 4.742950e-01   p_joint 2.773743e-04

Joint ci ratio: 1.240060e-01	ci left: 2.610147e-04	ci right 2.957885e-04	k: 998	n:3590000
Cons ci ratio: 2.178105e-03	ci left: 4.737859e-01	ci right 4.748192e-01	k: 1702746	n:3590000
KS ci ratio: 1.163887e-01	ci left: 2.974900e-04	ci right 3.345215e-04	k: 1133	n:3590000
FAM21C   3590000 perm   5327 sec   (674 perm/sec)   p_kst 3.155989e-04   p_cons 4.743025e-01   p_joint 2.779944e-04

Joint ci ratio: 1.238821e-01	ci left: 2.608280e-04	ci right 2.955396e-04	k: 1000	n:3600000
Cons ci ratio: 2.175044e-03	ci left: 4.737943e-01	ci right 4.748263e-01	k: 1707517	n:3600000
KS ci ratio: 1.162862e-01	ci left: 2.972031e-04	ci right 3.341640e-04	k: 1135	n:3600000
FAM21C   3600000 perm   5355 sec   (672 perm/sec)   p_kst 3.152778e-04   p_cons 4.743103e-01   p_joint 2.777778e-04

Joint ci ratio: 1.236353e-01	ci left: 2.611792e-04	ci right 2.958633e-04	k: 1004	n:3610000
Cons ci ratio: 2.171995e-03	ci left: 4.738031e-01	ci right 4.748335e-01	k: 1712289	n:3610000
KS ci ratio: 1.160311e-01	ci left: 2.977246e-04	ci right 3.346636e-04	k: 1140	n:3610000
FAM21C   3610000 perm   5383 sec   (671 perm/sec)   p_kst 3.157895e-04   p_cons 4.743183e-01   p_joint 2.781163e-04

Joint ci ratio: 1.235739e-01	ci left: 2.607254e-04	ci right 2.953308e-04	k: 1005	n:3620000
Cons ci ratio: 2.169041e-03	ci left: 4.737927e-01	ci right 4.748217e-01	k: 1716992	n:3620000
KS ci ratio: 1.159296e-01	ci left: 2.974386e-04	ci right 3.343076e-04	k: 1142	n:3620000
FAM21C   3620000 perm   5411 sec   (669 perm/sec)   p_kst 3.154696e-04   p_cons 4.743072e-01   p_joint 2.776243e-04

Joint ci ratio: 1.233289e-01	ci left: 2.610751e-04	ci right 2.956531e-04	k: 1009	n:3630000
Cons ci ratio: 2.166110e-03	ci left: 4.737799e-01	ci right 4.748075e-01	k: 1721686	n:3630000
KS ci ratio: 1.157778e-01	ci left: 2.974217e-04	ci right 3.342371e-04	k: 1145	n:3630000
FAM21C   3630000 perm   5440 sec   (667 perm/sec)   p_kst 3.154270e-04   p_cons 4.742937e-01   p_joint 2.779614e-04

Joint ci ratio: 1.232070e-01	ci left: 2.608904e-04	ci right 2.954073e-04	k: 1011	n:3640000
Cons ci ratio: 2.163168e-03	ci left: 4.737724e-01	ci right 4.747986e-01	k: 1726399	n:3640000
KS ci ratio: 1.156769e-01	ci left: 2.971382e-04	ci right 3.338842e-04	k: 1147	n:3640000
FAM21C   3640000 perm   5468 sec   (666 perm/sec)   p_kst 3.151099e-04   p_cons 4.742854e-01   p_joint 2.777473e-04

Joint ci ratio: 1.230248e-01	ci left: 2.609722e-04	ci right 2.954451e-04	k: 1014	n:3650000
Cons ci ratio: 2.160122e-03	ci left: 4.737917e-01	ci right 4.748165e-01	k: 1731210	n:3650000
KS ci ratio: 1.153757e-01	ci left: 2.979204e-04	ci right 3.346607e-04	k: 1153	n:3650000
FAM21C   3650000 perm   5496 sec   (664 perm/sec)   p_kst 3.158904e-04   p_cons 4.743041e-01   p_joint 2.778082e-04

Joint ci ratio: 1.178536e-01	ci left: 2.843741e-04	ci right 3.202494e-04	k: 1105	n:3660000
Cons ci ratio: 2.157228e-03	ci left: 4.737788e-01	ci right 4.748022e-01	k: 1735903	n:3660000
KS ci ratio: 1.152260e-01	ci left: 2.979025e-04	ci right 3.345897e-04	k: 1156	n:3660000
FAM21C   3660000 perm   5523 sec   (663 perm/sec)   p_kst 3.158470e-04   p_cons 4.742904e-01   p_joint 3.019126e-04

Joint ci ratio: 1.176941e-01	ci left: 2.843925e-04	ci right 3.202183e-04	k: 1108	n:3670000
Cons ci ratio: 2.154086e-03	ci left: 4.738261e-01	ci right 4.748481e-01	k: 1740817	n:3670000
KS ci ratio: 1.151266e-01	ci left: 2.976200e-04	ci right 3.342386e-04	k: 1158	n:3670000
FAM21C   3670000 perm   5551 sec   (661 perm/sec)   p_kst 3.155313e-04   p_cons 4.743371e-01   p_joint 3.019074e-04

Joint ci ratio: 1.174296e-01	ci left: 2.849385e-04	ci right 3.207468e-04	k: 1113	n:3680000
Cons ci ratio: 2.151126e-03	ci left: 4.738340e-01	ci right 4.748546e-01	k: 1745587	n:3680000
KS ci ratio: 1.149779e-01	ci left: 2.976030e-04	ci right 3.341690e-04	k: 1161	n:3680000
FAM21C   3680000 perm   5579 sec   (660 perm/sec)   p_kst 3.154891e-04   p_cons 4.743443e-01   p_joint 3.024457e-04

Joint ci ratio: 1.173244e-01	ci left: 2.846924e-04	ci right 3.204355e-04	k: 1115	n:3690000
Cons ci ratio: 2.148211e-03	ci left: 4.738343e-01	ci right 4.748535e-01	k: 1750329	n:3690000
KS ci ratio: 1.148298e-01	ci left: 2.975861e-04	ci right 3.340998e-04	k: 1164	n:3690000
FAM21C   3690000 perm   5607 sec   (658 perm/sec)   p_kst 3.154472e-04   p_cons 4.743439e-01   p_joint 3.021680e-04

Joint ci ratio: 1.170624e-01	ci left: 2.852347e-04	ci right 3.209604e-04	k: 1120	n:3700000
Cons ci ratio: 2.145304e-03	ci left: 4.738354e-01	ci right 4.748533e-01	k: 1755074	n:3700000
KS ci ratio: 1.145841e-01	ci left: 2.980944e-04	ci right 3.345869e-04	k: 1169	n:3700000
FAM21C   3700000 perm   5636 sec   (656 perm/sec)   p_kst 3.159459e-04   p_cons 4.743443e-01   p_joint 3.027027e-04

Joint ci ratio: 1.168022e-01	ci left: 2.857742e-04	ci right 3.214823e-04	k: 1125	n:3710000
Cons ci ratio: 2.142378e-03	ci left: 4.738438e-01	ci right 4.748603e-01	k: 1759846	n:3710000
KS ci ratio: 1.144375e-01	ci left: 2.980764e-04	ci right 3.345168e-04	k: 1172	n:3710000
FAM21C   3710000 perm   5665 sec   (655 perm/sec)   p_kst 3.159030e-04   p_cons 4.743520e-01   p_joint 3.032345e-04

Joint ci ratio: 1.165952e-01	ci left: 2.860498e-04	ci right 3.217248e-04	k: 1129	n:3720000
Cons ci ratio: 2.139516e-03	ci left: 4.738398e-01	ci right 4.748549e-01	k: 1764572	n:3720000
KS ci ratio: 1.142914e-01	ci left: 2.980585e-04	ci right 3.344471e-04	k: 1175	n:3720000
FAM21C   3720000 perm   5694 sec   (653 perm/sec)   p_kst 3.158602e-04   p_cons 4.743473e-01   p_joint 3.034946e-04

Joint ci ratio: 1.163381e-01	ci left: 2.865844e-04	ci right 3.222418e-04	k: 1134	n:3730000
Cons ci ratio: 2.136566e-03	ci left: 4.738594e-01	ci right 4.748731e-01	k: 1769386	n:3730000
KS ci ratio: 1.140492e-01	ci left: 2.985616e-04	ci right 3.349292e-04	k: 1180	n:3730000
FAM21C   3730000 perm   5722 sec   (652 perm/sec)   p_kst 3.163539e-04   p_cons 4.743662e-01   p_joint 3.040214e-04

Joint ci ratio: 1.162358e-01	ci left: 2.863373e-04	ci right 3.219305e-04	k: 1136	n:3740000
Cons ci ratio: 2.133647e-03	ci left: 4.738740e-01	ci right 4.748864e-01	k: 1774182	n:3740000
KS ci ratio: 1.138085e-01	ci left: 2.990621e-04	ci right 3.354087e-04	k: 1185	n:3740000
FAM21C   3740000 perm   5751 sec   (650 perm/sec)   p_kst 3.168449e-04   p_cons 4.743802e-01   p_joint 3.037433e-04

Joint ci ratio: 1.160318e-01	ci left: 2.866094e-04	ci right 3.221696e-04	k: 1140	n:3750000
Cons ci ratio: 2.130808e-03	ci left: 4.738729e-01	ci right 4.748839e-01	k: 1778919	n:3750000
KS ci ratio: 1.136649e-01	ci left: 2.990419e-04	ci right 3.353370e-04	k: 1188	n:3750000
FAM21C   3750000 perm   5781 sec   (649 perm/sec)   p_kst 3.168000e-04   p_cons 4.743784e-01   p_joint 3.040000e-04

Joint ci ratio: 1.158290e-01	ci left: 2.868802e-04	ci right 3.224074e-04	k: 1144	n:3760000
Cons ci ratio: 2.127921e-03	ci left: 4.738859e-01	ci right 4.748956e-01	k: 1783709	n:3760000
KS ci ratio: 1.135694e-01	ci left: 2.987634e-04	ci right 3.349922e-04	k: 1190	n:3760000
FAM21C   3760000 perm   5810 sec   (647 perm/sec)   p_kst 3.164894e-04   p_cons 4.743907e-01   p_joint 3.042553e-04

Joint ci ratio: 1.156775e-01	ci left: 2.868919e-04	ci right 3.223710e-04	k: 1147	n:3770000
Cons ci ratio: 2.125110e-03	ci left: 4.738834e-01	ci right 4.748917e-01	k: 1788441	n:3770000
KS ci ratio: 1.133792e-01	ci left: 2.990018e-04	ci right 3.351947e-04	k: 1194	n:3770000
FAM21C   3770000 perm   5839 sec   (646 perm/sec)   p_kst 3.167109e-04   p_cons 4.743875e-01   p_joint 3.042440e-04

Joint ci ratio: 1.153764e-01	ci left: 2.876744e-04	ci right 3.231513e-04	k: 1153	n:3780000
Cons ci ratio: 2.122322e-03	ci left: 4.738782e-01	ci right 4.748853e-01	k: 1793163	n:3780000
KS ci ratio: 1.131427e-01	ci left: 2.994961e-04	ci right 3.356681e-04	k: 1199	n:3780000
FAM21C   3780000 perm   5868 sec   (644 perm/sec)   p_kst 3.171958e-04   p_cons 4.743817e-01   p_joint 3.050265e-04

Joint ci ratio: 1.153264e-01	ci left: 2.871716e-04	ci right 3.225702e-04	k: 1154	n:3790000
Cons ci ratio: 2.119509e-03	ci left: 4.738816e-01	ci right 4.748873e-01	k: 1797917	n:3790000
KS ci ratio: 1.130015e-01	ci left: 2.994750e-04	ci right 3.355964e-04	k: 1202	n:3790000
FAM21C   3790000 perm   5897 sec   (643 perm/sec)   p_kst 3.171504e-04   p_cons 4.743844e-01   p_joint 3.044855e-04

Joint ci ratio: 1.152267e-01	ci left: 2.869270e-04	ci right 3.222628e-04	k: 1156	n:3800000
Cons ci ratio: 2.116766e-03	ci left: 4.738710e-01	ci right 4.748754e-01	k: 1802618	n:3800000
KS ci ratio: 1.128609e-01	ci left: 2.994541e-04	ci right 3.355250e-04	k: 1205	n:3800000
FAM21C   3800000 perm   5926 sec   (641 perm/sec)   p_kst 3.171053e-04   p_cons 4.743732e-01   p_joint 3.042105e-04

Joint ci ratio: 1.151770e-01	ci left: 2.864288e-04	ci right 3.216870e-04	k: 1157	n:3810000
Cons ci ratio: 2.113945e-03	ci left: 4.738814e-01	ci right 4.748845e-01	k: 1807399	n:3810000
KS ci ratio: 1.128141e-01	ci left: 2.989232e-04	ci right 3.349143e-04	k: 1206	n:3810000
FAM21C   3810000 perm   5956 sec   (640 perm/sec)   p_kst 3.165354e-04   p_cons 4.743829e-01   p_joint 3.036745e-04

Joint ci ratio: 1.174303e-01	ci left: 2.744956e-04	ci right 3.089918e-04	k: 1113	n:3820000
Cons ci ratio: 2.111196e-03	ci left: 4.738774e-01	ci right 4.748792e-01	k: 1812125	n:3820000
KS ci ratio: 1.126742e-01	ci left: 2.989038e-04	ci right 3.348450e-04	k: 1209	n:3820000
FAM21C   3820000 perm   5985 sec   (638 perm/sec)   p_kst 3.164921e-04   p_cons 4.743783e-01   p_joint 2.913613e-04

Joint ci ratio: 1.173250e-01	ci left: 2.742858e-04	ci right 3.087225e-04	k: 1115	n:3830000
Cons ci ratio: 2.108432e-03	ci left: 4.738794e-01	ci right 4.748799e-01	k: 1816874	n:3830000
KS ci ratio: 1.126277e-01	ci left: 2.983771e-04	ci right 3.342392e-04	k: 1210	n:3830000
FAM21C   3830000 perm   6014 sec   (637 perm/sec)   p_kst 3.159269e-04   p_cons 4.743796e-01   p_joint 2.911227e-04

Joint ci ratio: 1.172725e-01	ci left: 2.738243e-04	ci right 3.081866e-04	k: 1116	n:3840000
Cons ci ratio: 2.105749e-03	ci left: 4.738648e-01	ci right 4.748639e-01	k: 1821559	n:3840000
KS ci ratio: 1.124885e-01	ci left: 2.983594e-04	ci right 3.341720e-04	k: 1213	n:3840000
FAM21C   3840000 perm   6044 sec   (635 perm/sec)   p_kst 3.158854e-04   p_cons 4.743643e-01   p_joint 2.906250e-04

Joint ci ratio: 1.146338e-01	ci left: 2.862280e-04	ci right 3.212840e-04	k: 1168	n:3850000
Cons ci ratio: 2.103109e-03	ci left: 4.738427e-01	ci right 4.748405e-01	k: 1826215	n:3850000
KS ci ratio: 1.123036e-01	ci left: 2.985942e-04	ci right 3.343722e-04	k: 1217	n:3850000
FAM21C   3850000 perm   6074 sec   (634 perm/sec)   p_kst 3.161039e-04   p_cons 4.743416e-01   p_joint 3.033766e-04

Joint ci ratio: 1.145359e-01	ci left: 2.859897e-04	ci right 3.209846e-04	k: 1170	n:3860000
Cons ci ratio: 2.100380e-03	ci left: 4.738440e-01	ci right 4.748405e-01	k: 1830961	n:3860000
KS ci ratio: 1.121655e-01	ci left: 2.985760e-04	ci right 3.343049e-04	k: 1220	n:3860000
FAM21C   3860000 perm   6103 sec   (633 perm/sec)   p_kst 3.160622e-04   p_cons 4.743422e-01   p_joint 3.031088e-04

Joint ci ratio: 1.144382e-01	ci left: 2.857527e-04	ci right 3.206868e-04	k: 1172	n:3870000
Cons ci ratio: 2.097635e-03	ci left: 4.738517e-01	ci right 4.748470e-01	k: 1835732	n:3870000
KS ci ratio: 1.120738e-01	ci left: 2.983068e-04	ci right 3.339724e-04	k: 1222	n:3870000
FAM21C   3870000 perm   6132 sec   (631 perm/sec)   p_kst 3.157623e-04   p_cons 4.743494e-01   p_joint 3.028424e-04

Joint ci ratio: 1.142436e-01	ci left: 2.860177e-04	ci right 3.209207e-04	k: 1176	n:3880000
Cons ci ratio: 2.094913e-03	ci left: 4.738564e-01	ci right 4.748504e-01	k: 1840491	n:3880000
KS ci ratio: 1.119366e-01	ci left: 2.982895e-04	ci right 3.339065e-04	k: 1225	n:3880000
FAM21C   3880000 perm   6162 sec   (630 perm/sec)   p_kst 3.157216e-04   p_cons 4.743534e-01   p_joint 3.030928e-04

Joint ci ratio: 1.140017e-01	ci left: 2.865311e-04	ci right 3.214177e-04	k: 1181	n:3890000
Cons ci ratio: 2.092316e-03	ci left: 4.738338e-01	ci right 4.748264e-01	k: 1845144	n:3890000
KS ci ratio: 1.117544e-01	ci left: 2.985222e-04	ci right 3.341051e-04	k: 1229	n:3890000
FAM21C   3890000 perm   6192 sec   (628 perm/sec)   p_kst 3.159383e-04   p_cons 4.743301e-01   p_joint 3.035990e-04

Joint ci ratio: 1.138573e-01	ci left: 2.865437e-04	ci right 3.213847e-04	k: 1184	n:3900000
Cons ci ratio: 2.089682e-03	ci left: 4.738225e-01	ci right 4.748139e-01	k: 1849841	n:3900000
KS ci ratio: 1.116637e-01	ci left: 2.982552e-04	ci right 3.337756e-04	k: 1231	n:3900000
FAM21C   3900000 perm   6223 sec   (627 perm/sec)   p_kst 3.156410e-04   p_cons 4.743182e-01   p_joint 3.035897e-04

Joint ci ratio: 1.137134e-01	ci left: 2.865563e-04	ci right 3.213519e-04	k: 1187	n:3910000
Cons ci ratio: 2.086963e-03	ci left: 4.738338e-01	ci right 4.748240e-01	k: 1854626	n:3910000
KS ci ratio: 1.115280e-01	ci left: 2.982383e-04	ci right 3.337106e-04	k: 1234	n:3910000
FAM21C   3910000 perm   6253 sec   (625 perm/sec)   p_kst 3.156010e-04   p_cons 4.743289e-01   p_joint 3.035806e-04

Joint ci ratio: 1.135225e-01	ci left: 2.868167e-04	ci right 3.215815e-04	k: 1191	n:3920000
Cons ci ratio: 2.084317e-03	ci left: 4.738303e-01	ci right 4.748192e-01	k: 1859353	n:3920000
KS ci ratio: 1.113928e-01	ci left: 2.982214e-04	ci right 3.336460e-04	k: 1237	n:3920000
FAM21C   3920000 perm   6283 sec   (624 perm/sec)   p_kst 3.155612e-04   p_cons 4.743247e-01   p_joint 3.038265e-04

Joint ci ratio: 1.159310e-01	ci left: 2.739763e-04	ci right 3.079375e-04	k: 1142	n:3930000
Cons ci ratio: 2.081603e-03	ci left: 4.738454e-01	ci right 4.748330e-01	k: 1864153	n:3930000
KS ci ratio: 1.112581e-01	ci left: 2.982047e-04	ci right 3.335816e-04	k: 1240	n:3930000
FAM21C   3930000 perm   6314 sec   (622 perm/sec)   p_kst 3.155216e-04   p_cons 4.743392e-01   p_joint 2.905852e-04

Joint ci ratio: 1.158298e-01	ci left: 2.737739e-04	ci right 3.076783e-04	k: 1144	n:3940000
Cons ci ratio: 2.078994e-03	ci left: 4.738378e-01	ci right 4.748242e-01	k: 1868864	n:3940000
KS ci ratio: 1.111685e-01	ci left: 2.979413e-04	ci right 3.332567e-04	k: 1242	n:3940000
FAM21C   3940000 perm   6343 sec   (621 perm/sec)   p_kst 3.152284e-04   p_cons 4.743310e-01   p_joint 2.903553e-04

Joint ci ratio: 1.155274e-01	ci left: 2.745558e-04	ci right 3.084623e-04	k: 1150	n:3950000
Cons ci ratio: 2.076439e-03	ci left: 4.738196e-01	ci right 4.748047e-01	k: 1873533	n:3950000
KS ci ratio: 1.109012e-01	ci left: 2.986639e-04	ci right 3.339741e-04	k: 1248	n:3950000
FAM21C   3950000 perm   6374 sec   (620 perm/sec)   p_kst 3.159494e-04   p_cons 4.743122e-01   p_joint 2.911392e-04

Joint ci ratio: 1.153772e-01	ci left: 2.745982e-04	ci right 3.084628e-04	k: 1153	n:3960000
Cons ci ratio: 2.073789e-03	ci left: 4.738265e-01	ci right 4.748104e-01	k: 1878301	n:3960000
KS ci ratio: 1.106798e-01	ci left: 2.991373e-04	ci right 3.344284e-04	k: 1253	n:3960000
FAM21C   3960000 perm   6404 sec   (618 perm/sec)   p_kst 3.164141e-04   p_cons 4.743184e-01   p_joint 2.911616e-04

Joint ci ratio: 1.152275e-01	ci left: 2.746404e-04	ci right 3.084632e-04	k: 1156	n:3970000
Cons ci ratio: 2.071216e-03	ci left: 4.738175e-01	ci right 4.748001e-01	k: 1883006	n:3970000
KS ci ratio: 1.105477e-01	ci left: 2.991186e-04	ci right 3.343625e-04	k: 1256	n:3970000
FAM21C   3970000 perm   6435 sec   (617 perm/sec)   p_kst 3.163728e-04   p_cons 4.743088e-01   p_joint 2.911839e-04

Joint ci ratio: 1.151280e-01	ci left: 2.744384e-04	ci right 3.082052e-04	k: 1158	n:3980000
Cons ci ratio: 2.068498e-03	ci left: 4.738458e-01	ci right 4.748271e-01	k: 1887859	n:3980000
KS ci ratio: 1.104598e-01	ci left: 2.988556e-04	ci right 3.340388e-04	k: 1258	n:3980000
FAM21C   3980000 perm   6465 sec   (616 perm/sec)   p_kst 3.160804e-04   p_cons 4.743364e-01   p_joint 2.909548e-04

Joint ci ratio: 1.149793e-01	ci left: 2.744808e-04	ci right 3.082063e-04	k: 1161	n:3990000
Cons ci ratio: 2.065959e-03	ci left: 4.738330e-01	ci right 4.748132e-01	k: 1892549	n:3990000
KS ci ratio: 1.102848e-01	ci left: 2.990815e-04	ci right 3.342318e-04	k: 1262	n:3990000
FAM21C   3990000 perm   6496 sec   (614 perm/sec)   p_kst 3.162907e-04   p_cons 4.743231e-01   p_joint 2.909774e-04

Joint ci ratio: 1.148805e-01	ci left: 2.742802e-04	ci right 3.079501e-04	k: 1163	n:4000000
Cons ci ratio: 2.063401e-03	ci left: 4.738273e-01	ci right 4.748062e-01	k: 1897267	n:4000000
KS ci ratio: 1.102412e-01	ci left: 2.985769e-04	ci right 3.336531e-04	k: 1263	n:4000000
FAM21C   4000000 perm   6527 sec   (613 perm/sec)   p_kst 3.157500e-04   p_cons 4.743168e-01   p_joint 2.907500e-04

Joint ci ratio: 1.146836e-01	ci left: 2.745651e-04	ci right 3.082083e-04	k: 1167	n:4010000
Cons ci ratio: 2.060882e-03	ci left: 4.738147e-01	ci right 4.747924e-01	k: 1901957	n:4010000
KS ci ratio: 1.100238e-01	ci left: 2.990448e-04	ci right 3.341023e-04	k: 1268	n:4010000
FAM21C   4010000 perm   6558 sec   (612 perm/sec)   p_kst 3.162095e-04   p_cons 4.743035e-01   p_joint 2.910224e-04

Joint ci ratio: 1.145366e-01	ci left: 2.746070e-04	ci right 3.082092e-04	k: 1170	n:4020000
Cons ci ratio: 2.058359e-03	ci left: 4.738051e-01	ci right 4.747816e-01	k: 1906659	n:4020000
KS ci ratio: 1.098508e-01	ci left: 2.992686e-04	ci right 3.342935e-04	k: 1272	n:4020000
FAM21C   4020000 perm   6589 sec   (610 perm/sec)   p_kst 3.164179e-04   p_cons 4.742933e-01   p_joint 2.910448e-04

Joint ci ratio: 1.143902e-01	ci left: 2.746487e-04	ci right 3.082102e-04	k: 1173	n:4030000
Cons ci ratio: 2.055798e-03	ci left: 4.738072e-01	ci right 4.747824e-01	k: 1911408	n:4030000
KS ci ratio: 1.097646e-01	ci left: 2.990086e-04	ci right 3.339739e-04	k: 1274	n:4030000
FAM21C   4030000 perm   6620 sec   (609 perm/sec)   p_kst 3.161290e-04   p_cons 4.742948e-01   p_joint 2.910670e-04

Joint ci ratio: 1.141473e-01	ci left: 2.751711e-04	ci right 3.087203e-04	k: 1178	n:4040000
Cons ci ratio: 2.053205e-03	ci left: 4.738192e-01	ci right 4.747932e-01	k: 1916197	n:4040000
KS ci ratio: 1.095072e-01	ci left: 2.997130e-04	ci right 3.346731e-04	k: 1280	n:4040000
FAM21C   4040000 perm   6650 sec   (607 perm/sec)   p_kst 3.168317e-04   p_cons 4.743062e-01   p_joint 2.915842e-04

Joint ci ratio: 1.140506e-01	ci left: 2.749714e-04	ci right 3.084659e-04	k: 1180	n:4050000
Cons ci ratio: 2.050667e-03	ci left: 4.738200e-01	ci right 4.747929e-01	k: 1920941	n:4050000
KS ci ratio: 1.094218e-01	ci left: 2.994532e-04	ci right 3.343541e-04	k: 1282	n:4050000
FAM21C   4050000 perm   6682 sec   (606 perm/sec)   p_kst 3.165432e-04   p_cons 4.743064e-01   p_joint 2.913580e-04

Joint ci ratio: 1.139061e-01	ci left: 2.750120e-04	ci right 3.084661e-04	k: 1183	n:4060000
Cons ci ratio: 2.048133e-03	ci left: 4.738223e-01	ci right 4.747940e-01	k: 1925691	n:4060000
KS ci ratio: 1.092516e-01	ci left: 2.996739e-04	ci right 3.345427e-04	k: 1286	n:4060000
FAM21C   4060000 perm   6713 sec   (605 perm/sec)   p_kst 3.167488e-04   p_cons 4.743081e-01   p_joint 2.913793e-04

Joint ci ratio: 1.138580e-01	ci left: 2.745750e-04	ci right 3.079609e-04	k: 1184	n:4070000
Cons ci ratio: 2.045635e-03	ci left: 4.738182e-01	ci right 4.747887e-01	k: 1930415	n:4070000
KS ci ratio: 1.090400e-01	ci left: 3.001326e-04	ci right 3.349828e-04	k: 1291	n:4070000
FAM21C   4070000 perm   6745 sec   (603 perm/sec)   p_kst 3.171990e-04   p_cons 4.743034e-01   p_joint 2.909091e-04

Joint ci ratio: 1.136663e-01	ci left: 2.748545e-04	ci right 3.082144e-04	k: 1188	n:4080000
Cons ci ratio: 2.043114e-03	ci left: 4.738217e-01	ci right 4.747910e-01	k: 1935170	n:4080000
KS ci ratio: 1.089557e-01	ci left: 2.998738e-04	ci right 3.346653e-04	k: 1293	n:4080000
FAM21C   4080000 perm   6776 sec   (602 perm/sec)   p_kst 3.169118e-04   p_cons 4.743064e-01   p_joint 2.911765e-04

Joint ci ratio: 1.135709e-01	ci left: 2.746576e-04	ci right 3.079637e-04	k: 1190	n:4090000
Cons ci ratio: 2.040587e-03	ci left: 4.738292e-01	ci right 4.747973e-01	k: 1939941	n:4090000
KS ci ratio: 1.089558e-01	ci left: 2.991406e-04	ci right 3.338471e-04	k: 1293	n:4090000
FAM21C   4090000 perm   6808 sec   (601 perm/sec)   p_kst 3.161369e-04   p_cons 4.743132e-01   p_joint 2.909535e-04

Joint ci ratio: 1.135232e-01	ci left: 2.742246e-04	ci right 3.074634e-04	k: 1191	n:4100000
Cons ci ratio: 2.038084e-03	ci left: 4.738329e-01	ci right 4.747998e-01	k: 1944697	n:4100000
KS ci ratio: 1.088717e-01	ci left: 2.988855e-04	ci right 3.335339e-04	k: 1295	n:4100000
FAM21C   4100000 perm   6839 sec   (600 perm/sec)   p_kst 3.158537e-04   p_cons 4.743163e-01   p_joint 2.904878e-04

Joint ci ratio: 1.132859e-01	ci left: 2.747395e-04	ci right 3.079663e-04	k: 1196	n:4110000
Cons ci ratio: 2.035669e-03	ci left: 4.738174e-01	ci right 4.747831e-01	k: 1949374	n:4110000
KS ci ratio: 1.086622e-01	ci left: 2.993418e-04	ci right 3.339720e-04	k: 1300	n:4110000
FAM21C   4110000 perm   6870 sec   (598 perm/sec)   p_kst 3.163017e-04   p_cons 4.743002e-01   p_joint 2.909976e-04

Joint ci ratio: 1.130970e-01	ci left: 2.750160e-04	ci right 3.082172e-04	k: 1200	n:4120000
Cons ci ratio: 2.033185e-03	ci left: 4.738209e-01	ci right 4.747855e-01	k: 1954129	n:4120000
KS ci ratio: 1.085372e-01	ci left: 2.993236e-04	ci right 3.339093e-04	k: 1303	n:4120000
FAM21C   4120000 perm   6903 sec   (597 perm/sec)   p_kst 3.162621e-04   p_cons 4.743032e-01   p_joint 2.912621e-04

Joint ci ratio: 1.128623e-01	ci left: 2.755266e-04	ci right 3.087157e-04	k: 1205	n:4130000
Cons ci ratio: 2.030651e-03	ci left: 4.738389e-01	ci right 4.748023e-01	k: 1958944	n:4130000
KS ci ratio: 1.082883e-01	ci left: 3.000122e-04	ci right 3.345930e-04	k: 1309	n:4130000
FAM21C   4130000 perm   6934 sec   (596 perm/sec)   p_kst 3.169492e-04   p_cons 4.743206e-01   p_joint 2.917676e-04

Joint ci ratio: 1.128624e-01	ci left: 2.748610e-04	ci right 3.079701e-04	k: 1205	n:4140000
Cons ci ratio: 2.028208e-03	ci left: 4.738368e-01	ci right 4.747990e-01	k: 1963676	n:4140000
KS ci ratio: 1.082883e-01	ci left: 2.992876e-04	ci right 3.337848e-04	k: 1309	n:4140000
FAM21C   4140000 perm   6965 sec   (594 perm/sec)   p_kst 3.161836e-04   p_cons 4.743179e-01   p_joint 2.910628e-04

Joint ci ratio: 1.127689e-01	ci left: 2.746670e-04	ci right 3.077235e-04	k: 1207	n:4150000
Cons ci ratio: 2.025799e-03	ci left: 4.738286e-01	ci right 4.747897e-01	k: 1968383	n:4150000
KS ci ratio: 1.081645e-01	ci left: 2.992697e-04	ci right 3.337229e-04	k: 1312	n:4150000
FAM21C   4150000 perm   6996 sec   (593 perm/sec)   p_kst 3.161446e-04   p_cons 4.743092e-01   p_joint 2.908434e-04

Joint ci ratio: 1.126291e-01	ci left: 2.747076e-04	ci right 3.077252e-04	k: 1210	n:4160000
Cons ci ratio: 2.023426e-03	ci left: 4.738136e-01	ci right 4.747735e-01	k: 1973061	n:4160000
KS ci ratio: 1.079182e-01	ci left: 2.999536e-04	ci right 3.344020e-04	k: 1318	n:4160000
FAM21C   4160000 perm   7028 sec   (592 perm/sec)   p_kst 3.168269e-04   p_cons 4.742935e-01   p_joint 2.908654e-04

Joint ci ratio: 1.099811e-01	ci left: 2.878038e-04	ci right 3.215295e-04	k: 1269	n:4170000
Cons ci ratio: 2.020932e-03	ci left: 4.738305e-01	ci right 4.747892e-01	k: 1977872	n:4170000
KS ci ratio: 1.078365e-01	ci left: 2.997010e-04	ci right 3.340926e-04	k: 1320	n:4170000
FAM21C   4170000 perm   7059 sec   (591 perm/sec)   p_kst 3.165468e-04   p_cons 4.743098e-01   p_joint 3.043165e-04

Joint ci ratio: 1.124436e-01	ci left: 2.743232e-04	ci right 3.072367e-04	k: 1214	n:4180000
Cons ci ratio: 2.018520e-03	ci left: 4.738293e-01	ci right 4.747870e-01	k: 1982608	n:4180000
KS ci ratio: 1.077550e-01	ci left: 2.994496e-04	ci right 3.337847e-04	k: 1322	n:4180000
FAM21C   4180000 perm   7091 sec   (590 perm/sec)   p_kst 3.162679e-04   p_cons 4.743081e-01   p_joint 2.904306e-04

Joint ci ratio: 1.123512e-01	ci left: 2.741324e-04	ci right 3.069942e-04	k: 1216	n:4190000
Cons ci ratio: 2.016058e-03	ci left: 4.738428e-01	ci right 4.747993e-01	k: 1987405	n:4190000
KS ci ratio: 1.076736e-01	ci left: 2.991994e-04	ci right 3.334783e-04	k: 1324	n:4190000
FAM21C   4190000 perm   7123 sec   (588 perm/sec)   p_kst 3.159905e-04   p_cons 4.743210e-01   p_joint 2.902148e-04

Joint ci ratio: 1.121211e-01	ci left: 2.746368e-04	ci right 3.074872e-04	k: 1221	n:4200000
Cons ci ratio: 2.013653e-03	ci left: 4.738443e-01	ci right 4.747996e-01	k: 1992152	n:4200000
KS ci ratio: 1.075115e-01	ci left: 2.994137e-04	ci right 3.336623e-04	k: 1328	n:4200000
FAM21C   4200000 perm   7154 sec   (587 perm/sec)   p_kst 3.161905e-04   p_cons 4.743219e-01   p_joint 2.907143e-04

Joint ci ratio: 1.120294e-01	ci left: 2.744462e-04	ci right 3.072452e-04	k: 1223	n:4210000
Cons ci ratio: 2.011227e-03	ci left: 4.738531e-01	ci right 4.748073e-01	k: 1996930	n:4210000
KS ci ratio: 1.074711e-01	ci left: 2.989337e-04	ci right 3.331136e-04	k: 1329	n:4210000
FAM21C   4210000 perm   7186 sec   (586 perm/sec)   p_kst 3.156770e-04   p_cons 4.743302e-01   p_joint 2.904988e-04

Joint ci ratio: 1.119380e-01	ci left: 2.742565e-04	ci right 3.070043e-04	k: 1225	n:4220000
Cons ci ratio: 2.008921e-03	ci left: 4.738341e-01	ci right 4.747872e-01	k: 2001591	n:4220000
KS ci ratio: 1.074307e-01	ci left: 2.984559e-04	ci right 3.325676e-04	k: 1330	n:4220000
FAM21C   4220000 perm   7218 sec   (585 perm/sec)   p_kst 3.151659e-04   p_cons 4.743107e-01   p_joint 2.902844e-04

Joint ci ratio: 1.117104e-01	ci left: 2.747571e-04	ci right 3.074936e-04	k: 1230	n:4230000
Cons ci ratio: 2.006572e-03	ci left: 4.738278e-01	ci right 4.747798e-01	k: 2006305	n:4230000
KS ci ratio: 1.071894e-01	ci left: 2.991307e-04	ci right 3.332379e-04	k: 1336	n:4230000
FAM21C   4230000 perm   7250 sec   (583 perm/sec)   p_kst 3.158392e-04   p_cons 4.743038e-01   p_joint 2.907801e-04

Joint ci ratio: 1.116198e-01	ci left: 2.745676e-04	ci right 3.072532e-04	k: 1232	n:4240000
Cons ci ratio: 2.004229e-03	ci left: 4.738225e-01	ci right 4.747733e-01	k: 2011023	n:4240000
KS ci ratio: 1.071093e-01	ci left: 2.988843e-04	ci right 3.329363e-04	k: 1338	n:4240000
FAM21C   4240000 perm   7283 sec   (582 perm/sec)   p_kst 3.155660e-04   p_cons 4.742979e-01   p_joint 2.905660e-04

Joint ci ratio: 1.113043e-01	ci left: 2.755227e-04	ci right 3.082232e-04	k: 1239	n:4250000
Cons ci ratio: 2.001799e-03	ci left: 4.738405e-01	ci right 4.747902e-01	k: 2015840	n:4250000
KS ci ratio: 1.069098e-01	ci left: 2.993260e-04	ci right 3.333608e-04	k: 1343	n:4250000
FAM21C   4250000 perm   7315 sec   (581 perm/sec)   p_kst 3.160000e-04   p_cons 4.743153e-01   p_joint 2.915294e-04

Joint ci ratio: 1.111252e-01	ci left: 2.757888e-04	ci right 3.084648e-04	k: 1243	n:4260000
Cons ci ratio: 1.999455e-03	ci left: 4.738393e-01	ci right 4.747879e-01	k: 2020576	n:4260000
KS ci ratio: 1.066720e-01	ci left: 2.999942e-04	ci right 3.340244e-04	k: 1349	n:4260000
FAM21C   4260000 perm   7347 sec   (580 perm/sec)   p_kst 3.166667e-04   p_cons 4.743136e-01   p_joint 2.917840e-04

Joint ci ratio: 1.109469e-01	ci left: 2.760537e-04	ci right 3.087051e-04	k: 1247	n:4270000
Cons ci ratio: 1.997072e-03	ci left: 4.738499e-01	ci right 4.747974e-01	k: 2025362	n:4270000
KS ci ratio: 1.065143e-01	ci left: 3.002034e-04	ci right 3.342038e-04	k: 1353	n:4270000
FAM21C   4270000 perm   7380 sec   (579 perm/sec)   p_kst 3.168618e-04   p_cons 4.743237e-01   p_joint 2.920375e-04

Joint ci ratio: 1.108581e-01	ci left: 2.758630e-04	ci right 3.084641e-04	k: 1249	n:4280000
Cons ci ratio: 1.994706e-03	ci left: 4.738584e-01	ci right 4.748047e-01	k: 2030139	n:4280000
KS ci ratio: 1.064750e-01	ci left: 2.997294e-04	ci right 3.336628e-04	k: 1354	n:4280000
FAM21C   4280000 perm   7412 sec   (577 perm/sec)   p_kst 3.163551e-04   p_cons 4.743315e-01   p_joint 2.918224e-04

Joint ci ratio: 1.108138e-01	ci left: 2.754466e-04	ci right 3.079847e-04	k: 1250	n:4290000
Cons ci ratio: 1.992307e-03	ci left: 4.738773e-01	ci right 4.748225e-01	k: 2034961	n:4290000
KS ci ratio: 1.064357e-01	ci left: 2.992577e-04	ci right 3.331244e-04	k: 1355	n:4290000
FAM21C   4290000 perm   7445 sec   (576 perm/sec)   p_kst 3.158508e-04   p_cons 4.743499e-01   p_joint 2.913753e-04

Joint ci ratio: 1.108139e-01	ci left: 2.748061e-04	ci right 3.072684e-04	k: 1250	n:4300000
Cons ci ratio: 1.990069e-03	ci left: 4.738577e-01	ci right 4.748019e-01	k: 2039618	n:4300000
KS ci ratio: 1.063574e-01	ci left: 2.990145e-04	ci right 3.328272e-04	k: 1357	n:4300000
FAM21C   4300000 perm   7478 sec   (575 perm/sec)   p_kst 3.155814e-04   p_cons 4.743298e-01   p_joint 2.906977e-04

Joint ci ratio: 1.107254e-01	ci left: 2.746196e-04	ci right 3.070324e-04	k: 1252	n:4310000
Cons ci ratio: 1.987777e-03	ci left: 4.738538e-01	ci right 4.747968e-01	k: 2044342	n:4310000
KS ci ratio: 1.062401e-01	ci left: 2.989982e-04	ci right 3.327695e-04	k: 1360	n:4310000
FAM21C   4310000 perm   7511 sec   (574 perm/sec)   p_kst 3.155452e-04   p_cons 4.743253e-01   p_joint 2.904872e-04

Joint ci ratio: 1.082064e-01	ci left: 2.872676e-04	ci right 3.203527e-04	k: 1311	n:4320000
Cons ci ratio: 1.985545e-03	ci left: 4.738367e-01	ci right 4.747786e-01	k: 2049009	n:4320000
KS ci ratio: 1.062011e-01	ci left: 2.985314e-04	ci right 3.322368e-04	k: 1361	n:4320000
FAM21C   4320000 perm   7544 sec   (573 perm/sec)   p_kst 3.150463e-04   p_cons 4.743076e-01   p_joint 3.034722e-04

Joint ci ratio: 1.103736e-01	ci left: 2.751477e-04	ci right 3.075129e-04	k: 1260	n:4330000
Cons ci ratio: 1.983169e-03	ci left: 4.738580e-01	ci right 4.747989e-01	k: 2053842	n:4330000
KS ci ratio: 1.059292e-01	ci left: 2.994157e-04	ci right 3.331290e-04	k: 1368	n:4330000
FAM21C   4330000 perm   7577 sec   (571 perm/sec)   p_kst 3.159353e-04   p_cons 4.743284e-01   p_joint 2.909931e-04

Joint ci ratio: 1.102862e-01	ci left: 2.749618e-04	ci right 3.072778e-04	k: 1262	n:4340000
Cons ci ratio: 1.980884e-03	ci left: 4.738582e-01	ci right 4.747980e-01	k: 2058584	n:4340000
KS ci ratio: 1.058133e-01	ci left: 2.993988e-04	ci right 3.330710e-04	k: 1371	n:4340000
FAM21C   4340000 perm   7610 sec   (570 perm/sec)   p_kst 3.158986e-04   p_cons 4.743281e-01   p_joint 2.907834e-04

Joint ci ratio: 1.101990e-01	ci left: 2.747768e-04	ci right 3.070439e-04	k: 1264	n:4350000
Cons ci ratio: 1.978631e-03	ci left: 4.738523e-01	ci right 4.747910e-01	k: 2063299	n:4350000
KS ci ratio: 1.056210e-01	ci left: 2.998295e-04	ci right 3.334851e-04	k: 1376	n:4350000
FAM21C   4350000 perm   7643 sec   (569 perm/sec)   p_kst 3.163218e-04   p_cons 4.743216e-01   p_joint 2.905747e-04

Joint ci ratio: 1.100252e-01	ci left: 2.750387e-04	ci right 3.072824e-04	k: 1268	n:4360000
Cons ci ratio: 1.976362e-03	ci left: 4.738525e-01	ci right 4.747902e-01	k: 2068041	n:4360000
KS ci ratio: 1.055444e-01	ci left: 2.995885e-04	ci right 3.331911e-04	k: 1378	n:4360000
FAM21C   4360000 perm   7677 sec   (568 perm/sec)   p_kst 3.160550e-04   p_cons 4.743213e-01   p_joint 2.908257e-04

Joint ci ratio: 1.099819e-01	ci left: 2.746319e-04	ci right 3.068143e-04	k: 1269	n:4370000
Cons ci ratio: 1.974094e-03	ci left: 4.738544e-01	ci right 4.747910e-01	k: 2072790	n:4370000
KS ci ratio: 1.055062e-01	ci left: 2.991257e-04	ci right 3.326635e-04	k: 1379	n:4370000
FAM21C   4370000 perm   7710 sec   (567 perm/sec)   p_kst 3.155606e-04   p_cons 4.743227e-01   p_joint 2.903890e-04

Joint ci ratio: 1.007941e-01	ci left: 3.278029e-04	ci right 3.628175e-04	k: 1511	n:4380000
Cons ci ratio: 1.971834e-03	ci left: 4.738562e-01	ci right 4.747917e-01	k: 2077539	n:4380000
KS ci ratio: 1.052775e-01	ci left: 2.997765e-04	ci right 3.333099e-04	k: 1385	n:4380000
FAM21C   4380000 perm   7744 sec   (566 perm/sec)   p_kst 3.162100e-04   p_cons 4.743240e-01   p_joint 3.449772e-04

Joint ci ratio: 1.006943e-01	ci left: 3.277224e-04	ci right 3.626916e-04	k: 1514	n:4390000
Cons ci ratio: 1.969579e-03	ci left: 4.738588e-01	ci right 4.747932e-01	k: 2082291	n:4390000
KS ci ratio: 1.050881e-01	ci left: 3.002027e-04	ci right 3.337196e-04	k: 1390	n:4390000
FAM21C   4390000 perm   7778 sec   (564 perm/sec)   p_kst 3.166287e-04   p_cons 4.743260e-01   p_joint 3.448747e-04

Joint ci ratio: 1.005947e-01	ci left: 3.276422e-04	ci right 3.625663e-04	k: 1517	n:4400000
Cons ci ratio: 1.967336e-03	ci left: 4.738601e-01	ci right 4.747935e-01	k: 2087038	n:4400000
KS ci ratio: 1.050504e-01	ci left: 2.997417e-04	ci right 3.331944e-04	k: 1391	n:4400000
FAM21C   4400000 perm   7812 sec   (563 perm/sec)   p_kst 3.161364e-04   p_cons 4.743268e-01   p_joint 3.447727e-04

Joint ci ratio: 1.004294e-01	ci left: 3.280045e-04	ci right 3.629064e-04	k: 1522	n:4410000
Cons ci ratio: 1.965138e-03	ci left: 4.738522e-01	ci right 4.747845e-01	k: 2091744	n:4410000
KS ci ratio: 1.049750e-01	ci left: 2.995036e-04	ci right 3.329043e-04	k: 1393	n:4410000
FAM21C   4410000 perm   7846 sec   (562 perm/sec)   p_kst 3.158730e-04   p_cons 4.743184e-01   p_joint 3.451247e-04

Joint ci ratio: 1.003307e-01	ci left: 3.279241e-04	ci right 3.627811e-04	k: 1525	n:4420000
Cons ci ratio: 1.962877e-03	ci left: 4.738620e-01	ci right 4.747932e-01	k: 2096528	n:4420000
KS ci ratio: 1.049751e-01	ci left: 2.988260e-04	ci right 3.321511e-04	k: 1393	n:4420000
FAM21C   4420000 perm   7881 sec   (561 perm/sec)   p_kst 3.151584e-04   p_cons 4.743276e-01   p_joint 3.450226e-04

Joint ci ratio: 1.001667e-01	ci left: 3.282843e-04	ci right 3.631192e-04	k: 1530	n:4430000
Cons ci ratio: 1.960695e-03	ci left: 4.738539e-01	ci right 4.747841e-01	k: 2101233	n:4430000
KS ci ratio: 1.048999e-01	ci left: 2.985910e-04	ci right 3.318646e-04	k: 1395	n:4430000
FAM21C   4430000 perm   7915 sec   (560 perm/sec)   p_kst 3.148984e-04   p_cons 4.743190e-01   p_joint 3.453725e-04

Joint ci ratio: 1.001340e-01	ci left: 3.277645e-04	ci right 3.625322e-04	k: 1531	n:4440000
Cons ci ratio: 1.958551e-03	ci left: 4.738377e-01	ci right 4.747668e-01	k: 2105902	n:4440000
KS ci ratio: 1.048623e-01	ci left: 2.981378e-04	ci right 3.313483e-04	k: 1396	n:4440000
FAM21C   4440000 perm   7949 sec   (559 perm/sec)   p_kst 3.144144e-04   p_cons 4.743023e-01   p_joint 3.448198e-04

Joint ci ratio: 1.000687e-01	ci left: 3.274661e-04	ci right 3.621782e-04	k: 1533	n:4450000
Cons ci ratio: 1.956349e-03	ci left: 4.738382e-01	ci right 4.747663e-01	k: 2110645	n:4450000
KS ci ratio: 1.048248e-01	ci left: 2.976867e-04	ci right 3.308343e-04	k: 1397	n:4450000
FAM21C   4450000 perm   7983 sec   (557 perm/sec)   p_kst 3.139326e-04   p_cons 4.743022e-01   p_joint 3.444944e-04

Joint ci ratio: 9.997105e-02	ci left: 3.273877e-04	ci right 3.620556e-04	k: 1536	n:4460000
Cons ci ratio: 1.954168e-03	ci left: 4.738354e-01	ci right 4.747624e-01	k: 2115373	n:4460000
KS ci ratio: 1.047125e-01	ci left: 2.976743e-04	ci right 3.307828e-04	k: 1400	n:4460000
FAM21C   4460000 perm   8017 sec   (556 perm/sec)   p_kst 3.139013e-04   p_cons 4.742989e-01   p_joint 3.443946e-04

Joint ci ratio: 9.987363e-02	ci left: 3.273097e-04	ci right 3.619336e-04	k: 1539	n:4470000
Cons ci ratio: 1.951842e-03	ci left: 4.738712e-01	ci right 4.747973e-01	k: 2120274	n:4470000
KS ci ratio: 1.046006e-01	ci left: 2.976619e-04	ci right 3.307315e-04	k: 1403	n:4470000
FAM21C   4470000 perm   8052 sec   (555 perm/sec)   p_kst 3.138702e-04   p_cons 4.743342e-01   p_joint 3.442953e-04

Joint ci ratio: 9.974417e-02	ci left: 3.274496e-04	ci right 3.620408e-04	k: 1543	n:4480000
Cons ci ratio: 1.949670e-03	ci left: 4.738699e-01	ci right 4.747949e-01	k: 2125009	n:4480000
KS ci ratio: 1.044890e-01	ci left: 2.976496e-04	ci right 3.306804e-04	k: 1406	n:4480000
FAM21C   4480000 perm   8086 sec   (554 perm/sec)   p_kst 3.138393e-04   p_cons 4.743324e-01   p_joint 3.444196e-04

Joint ci ratio: 9.958304e-02	ci left: 3.278062e-04	ci right 3.623758e-04	k: 1548	n:4490000
Cons ci ratio: 1.947491e-03	ci left: 4.738721e-01	ci right 4.747961e-01	k: 2129760	n:4490000
KS ci ratio: 1.043408e-01	ci left: 2.978543e-04	ci right 3.308581e-04	k: 1410	n:4490000
FAM21C   4490000 perm   8120 sec   (553 perm/sec)   p_kst 3.140312e-04   p_cons 4.743341e-01   p_joint 3.447661e-04

Joint ci ratio: 9.951883e-02	ci left: 3.275111e-04	ci right 3.620260e-04	k: 1550	n:4500000
Cons ci ratio: 1.945359e-03	ci left: 4.738641e-01	ci right 4.747870e-01	k: 2134465	n:4500000
KS ci ratio: 1.042670e-01	ci left: 2.976252e-04	ci right 3.305789e-04	k: 1412	n:4500000
FAM21C   4500000 perm   8154 sec   (552 perm/sec)   p_kst 3.137778e-04   p_cons 4.743256e-01   p_joint 3.444444e-04

Joint ci ratio: 9.942273e-02	ci left: 3.274335e-04	ci right 3.619050e-04	k: 1553	n:4510000
Cons ci ratio: 1.943120e-03	ci left: 4.738854e-01	ci right 4.748073e-01	k: 2139302	n:4510000
KS ci ratio: 1.041565e-01	ci left: 2.976132e-04	ci right 3.305284e-04	k: 1415	n:4510000
FAM21C   4510000 perm   8188 sec   (551 perm/sec)   p_kst 3.137472e-04   p_cons 4.743463e-01   p_joint 3.443459e-04

Joint ci ratio: 9.926315e-02	ci left: 3.277879e-04	ci right 3.622380e-04	k: 1558	n:4520000
Cons ci ratio: 1.940980e-03	ci left: 4.738832e-01	ci right 4.748040e-01	k: 2144033	n:4520000
KS ci ratio: 1.040830e-01	ci left: 2.973857e-04	ci right 3.302511e-04	k: 1417	n:4520000
FAM21C   4520000 perm   8223 sec   (550 perm/sec)   p_kst 3.134956e-04   p_cons 4.743436e-01   p_joint 3.446903e-04

Joint ci ratio: 9.913605e-02	ci left: 3.279254e-04	ci right 3.623433e-04	k: 1562	n:4530000
Cons ci ratio: 1.938772e-03	ci left: 4.739003e-01	ci right 4.748202e-01	k: 2148852	n:4530000
KS ci ratio: 1.038635e-01	ci left: 2.980193e-04	ci right 3.308810e-04	k: 1423	n:4530000
FAM21C   4530000 perm   8257 sec   (549 perm/sec)   p_kst 3.141280e-04   p_cons 4.743603e-01   p_joint 3.448124e-04

Joint ci ratio: 9.897784e-02	ci left: 3.282771e-04	ci right 3.626738e-04	k: 1567	n:4540000
Cons ci ratio: 1.936661e-03	ci left: 4.738943e-01	ci right 4.748132e-01	k: 2153566	n:4540000
KS ci ratio: 1.037179e-01	ci left: 2.982210e-04	ci right 3.310561e-04	k: 1427	n:4540000
FAM21C   4540000 perm   8292 sec   (548 perm/sec)   p_kst 3.143172e-04   p_cons 4.743537e-01   p_joint 3.451542e-04

Joint ci ratio: 9.882039e-02	ci left: 3.286273e-04	ci right 3.630028e-04	k: 1572	n:4550000
Cons ci ratio: 1.934551e-03	ci left: 4.738899e-01	ci right 4.748077e-01	k: 2158287	n:4550000
KS ci ratio: 1.036453e-01	ci left: 2.979938e-04	ci right 3.307795e-04	k: 1429	n:4550000
FAM21C   4550000 perm   8326 sec   (546 perm/sec)   p_kst 3.140659e-04   p_cons 4.743488e-01   p_joint 3.454945e-04

Joint ci ratio: 9.866369e-02	ci left: 3.289761e-04	ci right 3.633303e-04	k: 1577	n:4560000
Cons ci ratio: 1.932476e-03	ci left: 4.738780e-01	ci right 4.747948e-01	k: 2162974	n:4560000
KS ci ratio: 1.035007e-01	ci left: 2.981947e-04	ci right 3.309540e-04	k: 1433	n:4560000
FAM21C   4560000 perm   8363 sec   (545 perm/sec)   p_kst 3.142544e-04   p_cons 4.743364e-01   p_joint 3.458333e-04

Joint ci ratio: 9.847662e-02	ci left: 3.295368e-04	ci right 3.638805e-04	k: 1583	n:4570000
Cons ci ratio: 1.930402e-03	ci left: 4.738679e-01	ci right 4.747838e-01	k: 2167669	n:4570000
KS ci ratio: 1.032489e-01	ci left: 2.990344e-04	ci right 3.318011e-04	k: 1440	n:4570000
FAM21C   4570000 perm   8397 sec   (544 perm/sec)   p_kst 3.150985e-04   p_cons 4.743258e-01   p_joint 3.463895e-04

Joint ci ratio: 1.049380e-01	ci left: 2.885992e-04	ci right 3.207717e-04	k: 1394	n:4580000
Cons ci ratio: 1.928281e-03	ci left: 4.738716e-01	ci right 4.747865e-01	k: 2172427	n:4580000
KS ci ratio: 1.031059e-01	ci left: 2.992323e-04	ci right 3.319726e-04	k: 1444	n:4580000
FAM21C   4580000 perm   8432 sec   (543 perm/sec)   p_kst 3.152838e-04   p_cons 4.743290e-01   p_joint 3.043668e-04

Joint ci ratio: 1.048253e-01	ci left: 2.886069e-04	ci right 3.207436e-04	k: 1397	n:4590000
Cons ci ratio: 1.926204e-03	ci left: 4.738658e-01	ci right 4.747796e-01	k: 2177141	n:4590000
KS ci ratio: 1.029991e-01	ci left: 2.992171e-04	ci right 3.319197e-04	k: 1447	n:4590000
FAM21C   4590000 perm   8467 sec   (542 perm/sec)   p_kst 3.152505e-04   p_cons 4.743227e-01   p_joint 3.043573e-04

Joint ci ratio: 9.825979e-02	ci left: 3.288719e-04	ci right 3.630665e-04	k: 1590	n:4600000
Cons ci ratio: 1.924111e-03	ci left: 4.738658e-01	ci right 4.747786e-01	k: 2181882	n:4600000
KS ci ratio: 1.028925e-01	ci left: 2.992020e-04	ci right 3.318671e-04	k: 1450	n:4600000
FAM21C   4600000 perm   8502 sec   (541 perm/sec)   p_kst 3.152174e-04   p_cons 4.743222e-01   p_joint 3.456522e-04

Joint ci ratio: 1.046011e-01	ci left: 2.886222e-04	ci right 3.206877e-04	k: 1403	n:4610000
Cons ci ratio: 1.922031e-03	ci left: 4.738643e-01	ci right 4.747761e-01	k: 2186616	n:4610000
KS ci ratio: 1.027157e-01	ci left: 2.996097e-04	ci right 3.322597e-04	k: 1455	n:4610000
FAM21C   4610000 perm   8536 sec   (540 perm/sec)   p_kst 3.156182e-04   p_cons 4.743202e-01   p_joint 3.043384e-04

Joint ci ratio: 9.807504e-02	ci left: 3.287150e-04	ci right 3.628254e-04	k: 1596	n:4620000
Cons ci ratio: 1.919887e-03	ci left: 4.738809e-01	ci right 4.747918e-01	k: 2191434	n:4620000
KS ci ratio: 1.026100e-01	ci left: 2.995939e-04	ci right 3.322066e-04	k: 1458	n:4620000
FAM21C   4620000 perm   8570 sec   (539 perm/sec)   p_kst 3.155844e-04   p_cons 4.743364e-01   p_joint 3.454545e-04

Joint ci ratio: 1.043783e-01	ci left: 2.886375e-04	ci right 3.206322e-04	k: 1409	n:4630000
Cons ci ratio: 1.917837e-03	ci left: 4.738751e-01	ci right 4.747850e-01	k: 2196148	n:4630000
KS ci ratio: 1.025398e-01	ci left: 2.993677e-04	ci right 3.319321e-04	k: 1460	n:4630000
FAM21C   4630000 perm   8605 sec   (538 perm/sec)   p_kst 3.153348e-04   p_cons 4.743300e-01   p_joint 3.043197e-04

Joint ci ratio: 1.043044e-01	ci left: 2.884352e-04	ci right 3.203834e-04	k: 1411	n:4640000
Cons ci ratio: 1.915778e-03	ci left: 4.738734e-01	ci right 4.747823e-01	k: 2200881	n:4640000
KS ci ratio: 1.024347e-01	ci left: 2.993525e-04	ci right 3.318798e-04	k: 1463	n:4640000
FAM21C   4640000 perm   8641 sec   (537 perm/sec)   p_kst 3.153017e-04   p_cons 4.743278e-01   p_joint 3.040948e-04

Joint ci ratio: 1.040101e-01	ci left: 2.894905e-04	ci right 3.214597e-04	k: 1419	n:4650000
Cons ci ratio: 1.913718e-03	ci left: 4.738736e-01	ci right 4.747815e-01	k: 2205623	n:4650000
KS ci ratio: 1.021906e-01	ci left: 3.001756e-04	ci right 3.327100e-04	k: 1470	n:4650000
FAM21C   4650000 perm   8676 sec   (536 perm/sec)   p_kst 3.161290e-04   p_cons 4.743275e-01   p_joint 3.051613e-04

Joint ci ratio: 1.039369e-01	ci left: 2.892873e-04	ci right 3.212102e-04	k: 1421	n:4660000
Cons ci ratio: 1.911658e-03	ci left: 4.738755e-01	ci right 4.747825e-01	k: 2210373	n:4660000
KS ci ratio: 1.021559e-01	ci left: 2.997405e-04	ci right 3.322161e-04	k: 1471	n:4660000
FAM21C   4660000 perm   8710 sec   (535 perm/sec)   p_kst 3.156652e-04   p_cons 4.743290e-01   p_joint 3.049356e-04

Joint ci ratio: 1.037183e-01	ci left: 2.899193e-04	ci right 3.218405e-04	k: 1427	n:4670000
Cons ci ratio: 1.909629e-03	ci left: 4.738710e-01	ci right 4.747770e-01	k: 2215093	n:4670000
KS ci ratio: 1.020866e-01	ci left: 2.995160e-04	ci right 3.319439e-04	k: 1473	n:4670000
FAM21C   4670000 perm   8746 sec   (534 perm/sec)   p_kst 3.154176e-04   p_cons 4.743240e-01   p_joint 3.055675e-04

Joint ci ratio: 1.036096e-01	ci left: 2.899242e-04	ci right 3.218105e-04	k: 1430	n:4680000
Cons ci ratio: 1.907586e-03	ci left: 4.738719e-01	ci right 4.747769e-01	k: 2219838	n:4680000
KS ci ratio: 1.019139e-01	ci left: 2.999171e-04	ci right 3.323303e-04	k: 1478	n:4680000
FAM21C   4680000 perm   8781 sec   (533 perm/sec)   p_kst 3.158120e-04   p_cons 4.743244e-01   p_joint 3.055556e-04

Joint ci ratio: 1.035011e-01	ci left: 2.899291e-04	ci right 3.217805e-04	k: 1433	n:4690000
Cons ci ratio: 1.905538e-03	ci left: 4.738759e-01	ci right 4.747800e-01	k: 2224598	n:4690000
KS ci ratio: 1.018450e-01	ci left: 2.996932e-04	ci right 3.320590e-04	k: 1480	n:4690000
FAM21C   4690000 perm   8816 sec   (532 perm/sec)   p_kst 3.155650e-04   p_cons 4.743279e-01   p_joint 3.055437e-04

Joint ci ratio: 1.034290e-01	ci left: 2.897268e-04	ci right 3.215324e-04	k: 1435	n:4700000
Cons ci ratio: 1.903497e-03	ci left: 4.738798e-01	ci right 4.747828e-01	k: 2229357	n:4700000
KS ci ratio: 1.017078e-01	ci left: 2.998850e-04	ci right 3.322252e-04	k: 1484	n:4700000
FAM21C   4700000 perm   8852 sec   (531 perm/sec)   p_kst 3.157447e-04   p_cons 4.743313e-01   p_joint 3.053191e-04

Joint ci ratio: 1.032853e-01	ci left: 2.899390e-04	ci right 3.217210e-04	k: 1439	n:4710000
Cons ci ratio: 1.901450e-03	ci left: 4.738867e-01	ci right 4.747889e-01	k: 2234131	n:4710000
KS ci ratio: 1.016052e-01	ci left: 2.998690e-04	ci right 3.321730e-04	k: 1487	n:4710000
FAM21C   4710000 perm   8887 sec   (530 perm/sec)   p_kst 3.157113e-04   p_cons 4.743378e-01   p_joint 3.055202e-04

Joint ci ratio: 1.031778e-01	ci left: 2.899439e-04	ci right 3.216913e-04	k: 1442	n:4720000
Cons ci ratio: 1.899402e-03	ci left: 4.738958e-01	ci right 4.747970e-01	k: 2238915	n:4720000
KS ci ratio: 1.014689e-01	ci left: 3.000597e-04	ci right 3.323382e-04	k: 1491	n:4720000
FAM21C   4720000 perm   8923 sec   (529 perm/sec)   p_kst 3.158898e-04   p_cons 4.743464e-01   p_joint 3.055085e-04

Joint ci ratio: 1.031421e-01	ci left: 2.895368e-04	ci right 3.212281e-04	k: 1443	n:4730000
Cons ci ratio: 1.897366e-03	ci left: 4.739036e-01	ci right 4.748038e-01	k: 2243693	n:4730000
KS ci ratio: 1.013331e-01	ci left: 3.002495e-04	ci right 3.325026e-04	k: 1495	n:4730000
FAM21C   4730000 perm   8958 sec   (528 perm/sec)   p_kst 3.160677e-04   p_cons 4.743537e-01   p_joint 3.050740e-04

Joint ci ratio: 1.030708e-01	ci left: 2.893371e-04	ci right 3.209832e-04	k: 1445	n:4740000
Cons ci ratio: 1.895389e-03	ci left: 4.738972e-01	ci right 4.747965e-01	k: 2248404	n:4740000
KS ci ratio: 1.012317e-01	ci left: 3.002330e-04	ci right 3.324501e-04	k: 1498	n:4740000
FAM21C   4740000 perm   8995 sec   (527 perm/sec)   p_kst 3.160338e-04   p_cons 4.743468e-01   p_joint 3.048523e-04

Joint ci ratio: 1.029996e-01	ci left: 2.891381e-04	ci right 3.207394e-04	k: 1447	n:4750000
Cons ci ratio: 1.893444e-03	ci left: 4.738843e-01	ci right 4.747826e-01	k: 2253084	n:4750000
KS ci ratio: 1.010633e-01	ci left: 3.006269e-04	ci right 3.328295e-04	k: 1503	n:4750000
FAM21C   4750000 perm   9030 sec   (526 perm/sec)   p_kst 3.164211e-04   p_cons 4.743335e-01   p_joint 3.046316e-04

Joint ci ratio: 1.028222e-01	ci left: 2.895541e-04	ci right 3.211430e-04	k: 1452	n:4760000
Cons ci ratio: 1.891423e-03	ci left: 4.738929e-01	ci right 4.747903e-01	k: 2257866	n:4760000
KS ci ratio: 1.008622e-01	ci left: 3.012240e-04	ci right 3.334226e-04	k: 1509	n:4760000
FAM21C   4760000 perm   9066 sec   (525 perm/sec)   p_kst 3.170168e-04   p_cons 4.743416e-01   p_joint 3.050420e-04

Joint ci ratio: 1.027515e-01	ci left: 2.893556e-04	ci right 3.208998e-04	k: 1454	n:4770000
Cons ci ratio: 1.889499e-03	ci left: 4.738776e-01	ci right 4.747740e-01	k: 2262534	n:4770000
KS ci ratio: 1.008289e-01	ci left: 3.007969e-04	ci right 3.329385e-04	k: 1510	n:4770000
FAM21C   4770000 perm   9102 sec   (524 perm/sec)   p_kst 3.165618e-04   p_cons 4.743258e-01   p_joint 3.048218e-04

Joint ci ratio: 1.026458e-01	ci left: 2.893617e-04	ci right 3.208722e-04	k: 1457	n:4780000
Cons ci ratio: 1.887479e-03	ci left: 4.738893e-01	ci right 4.747848e-01	k: 2267331	n:4780000
KS ci ratio: 1.006957e-01	ci left: 3.009833e-04	ci right 3.330999e-04	k: 1514	n:4780000
FAM21C   4780000 perm   9139 sec   (523 perm/sec)   p_kst 3.167364e-04   p_cons 4.743370e-01   p_joint 3.048117e-04

Joint ci ratio: 1.025403e-01	ci left: 2.893679e-04	ci right 3.208447e-04	k: 1460	n:4790000
Cons ci ratio: 1.885472e-03	ci left: 4.738993e-01	ci right 4.747939e-01	k: 2272120	n:4790000
KS ci ratio: 1.005299e-01	ci left: 3.013725e-04	ci right 3.334746e-04	k: 1519	n:4790000
FAM21C   4790000 perm   9175 sec   (522 perm/sec)   p_kst 3.171190e-04   p_cons 4.743466e-01   p_joint 3.048017e-04

Joint ci ratio: 1.024702e-01	ci left: 2.891710e-04	ci right 3.206036e-04	k: 1462	n:4800000
Cons ci ratio: 1.883546e-03	ci left: 4.738892e-01	ci right 4.747829e-01	k: 2276813	n:4800000
KS ci ratio: 1.004639e-01	ci left: 3.011509e-04	ci right 3.332069e-04	k: 1521	n:4800000
FAM21C   4800000 perm   9211 sec   (521 perm/sec)   p_kst 3.168750e-04   p_cons 4.743360e-01   p_joint 3.045833e-04

Joint ci ratio: 1.023304e-01	ci left: 2.893801e-04	ci right 3.207900e-04	k: 1466	n:4810000
Cons ci ratio: 1.881527e-03	ci left: 4.739056e-01	ci right 4.747983e-01	k: 2281633	n:4810000
KS ci ratio: 1.003979e-01	ci left: 3.009301e-04	ci right 3.329405e-04	k: 1523	n:4810000
FAM21C   4810000 perm   9247 sec   (520 perm/sec)   p_kst 3.166320e-04   p_cons 4.743520e-01   p_joint 3.047817e-04

Joint ci ratio: 1.022607e-01	ci left: 2.891841e-04	ci right 3.205500e-04	k: 1468	n:4820000
Cons ci ratio: 1.879603e-03	ci left: 4.738985e-01	ci right 4.747903e-01	k: 2286340	n:4820000
KS ci ratio: 1.003650e-01	ci left: 3.005080e-04	ci right 3.324624e-04	k: 1524	n:4820000
FAM21C   4820000 perm   9284 sec   (519 perm/sec)   p_kst 3.161826e-04   p_cons 4.743444e-01   p_joint 3.045643e-04

Joint ci ratio: 1.020525e-01	ci left: 2.897958e-04	ci right 3.211603e-04	k: 1474	n:4830000
Cons ci ratio: 1.877697e-03	ci left: 4.738881e-01	ci right 4.747790e-01	k: 2291031	n:4830000
KS ci ratio: 1.002664e-01	ci left: 3.004914e-04	ci right 3.324108e-04	k: 1527	n:4830000
FAM21C   4830000 perm   9320 sec   (518 perm/sec)   p_kst 3.161491e-04   p_cons 4.743335e-01   p_joint 3.051760e-04

Joint ci ratio: 1.019144e-01	ci left: 2.900025e-04	ci right 3.213442e-04	k: 1478	n:4840000
Cons ci ratio: 1.875719e-03	ci left: 4.738984e-01	ci right 4.747884e-01	k: 2295822	n:4840000
KS ci ratio: 1.000701e-01	ci left: 3.010792e-04	ci right 3.329947e-04	k: 1533	n:4840000
FAM21C   4840000 perm   9356 sec   (517 perm/sec)   p_kst 3.167355e-04   p_cons 4.743434e-01   p_joint 3.053719e-04

Joint ci ratio: 1.018456e-01	ci left: 2.898064e-04	ci right 3.211045e-04	k: 1480	n:4850000
Cons ci ratio: 1.873801e-03	ci left: 4.738947e-01	ci right 4.747837e-01	k: 2300545	n:4850000
KS ci ratio: 9.993992e-02	ci left: 3.012625e-04	ci right 3.331534e-04	k: 1537	n:4850000
FAM21C   4850000 perm   9393 sec   (516 perm/sec)   p_kst 3.169072e-04   p_cons 4.743392e-01   p_joint 3.051546e-04

Joint ci ratio: 1.017083e-01	ci left: 2.900122e-04	ci right 3.212878e-04	k: 1484	n:4860000
Cons ci ratio: 1.871874e-03	ci left: 4.738944e-01	ci right 4.747825e-01	k: 2305285	n:4860000
KS ci ratio: 9.981020e-02	ci left: 3.014451e-04	ci right 3.333115e-04	k: 1541	n:4860000
FAM21C   4860000 perm   9429 sec   (515 perm/sec)   p_kst 3.170782e-04   p_cons 4.743385e-01   p_joint 3.053498e-04

Joint ci ratio: 1.015034e-01	ci left: 2.906174e-04	ci right 3.218914e-04	k: 1490	n:4870000
Cons ci ratio: 1.869942e-03	ci left: 4.738975e-01	ci right 4.747847e-01	k: 2310041	n:4870000
KS ci ratio: 9.958438e-02	ci left: 3.022277e-04	ci right 3.341003e-04	k: 1548	n:4870000
FAM21C   4870000 perm   9466 sec   (514 perm/sec)   p_kst 3.178645e-04   p_cons 4.743411e-01   p_joint 3.059548e-04

Joint ci ratio: 1.014694e-01	ci left: 2.902216e-04	ci right 3.214419e-04	k: 1491	n:4880000
Cons ci ratio: 1.867953e-03	ci left: 4.739171e-01	ci right 4.748034e-01	k: 2314878	n:4880000
KS ci ratio: 9.955228e-02	ci left: 3.018082e-04	ci right 3.336257e-04	k: 1549	n:4880000
FAM21C   4880000 perm   9503 sec   (514 perm/sec)   p_kst 3.174180e-04   p_cons 4.743602e-01   p_joint 3.055328e-04

Joint ci ratio: 1.013337e-01	ci left: 2.904253e-04	ci right 3.216233e-04	k: 1495	n:4890000
Cons ci ratio: 1.866058e-03	ci left: 4.739134e-01	ci right 4.747987e-01	k: 2319601	n:4890000
KS ci ratio: 9.939208e-02	ci left: 3.021880e-04	ci right 3.339914e-04	k: 1554	n:4890000
FAM21C   4890000 perm   9539 sec   (513 perm/sec)   p_kst 3.177914e-04   p_cons 4.743560e-01   p_joint 3.057260e-04

Joint ci ratio: 1.012998e-01	ci left: 2.900315e-04	ci right 3.211762e-04	k: 1496	n:4900000
Cons ci ratio: 1.864202e-03	ci left: 4.739006e-01	ci right 4.747851e-01	k: 2324280	n:4900000
KS ci ratio: 9.929634e-02	ci left: 3.021684e-04	ci right 3.339372e-04	k: 1557	n:4900000
FAM21C   4900000 perm   9576 sec   (512 perm/sec)   p_kst 3.177551e-04   p_cons 4.743429e-01   p_joint 3.053061e-04

Joint ci ratio: 1.012323e-01	ci left: 2.898378e-04	ci right 3.209397e-04	k: 1498	n:4910000
Cons ci ratio: 1.862225e-03	ci left: 4.739220e-01	ci right 4.748055e-01	k: 2329126	n:4910000
KS ci ratio: 9.923268e-02	ci left: 3.019502e-04	ci right 3.336745e-04	k: 1559	n:4910000
FAM21C   4910000 perm   9613 sec   (511 perm/sec)   p_kst 3.175153e-04   p_cons 4.743637e-01   p_joint 3.050916e-04

Joint ci ratio: 1.011311e-01	ci left: 2.898431e-04	ci right 3.209126e-04	k: 1501	n:4920000
Cons ci ratio: 1.860306e-03	ci left: 4.739292e-01	ci right 4.748119e-01	k: 2333903	n:4920000
KS ci ratio: 9.920091e-02	ci left: 3.015346e-04	ci right 3.332046e-04	k: 1560	n:4920000
FAM21C   4920000 perm   9650 sec   (510 perm/sec)   p_kst 3.170732e-04   p_cons 4.743705e-01   p_joint 3.050813e-04

Joint ci ratio: 1.010975e-01	ci left: 2.894529e-04	ci right 3.204696e-04	k: 1502	n:4930000
Cons ci ratio: 1.858375e-03	ci left: 4.739413e-01	ci right 4.748230e-01	k: 2338704	n:4930000
KS ci ratio: 9.913744e-02	ci left: 3.013186e-04	ci right 3.329445e-04	k: 1562	n:4930000
FAM21C   4930000 perm   9687 sec   (509 perm/sec)   p_kst 3.168357e-04   p_cons 4.743822e-01   p_joint 3.046653e-04

Joint ci ratio: 1.009297e-01	ci left: 2.898535e-04	ci right 3.208586e-04	k: 1507	n:4940000
Cons ci ratio: 1.856506e-03	ci left: 4.739383e-01	ci right 4.748192e-01	k: 2343431	n:4940000
KS ci ratio: 9.894767e-02	ci left: 3.018932e-04	ci right 3.335152e-04	k: 1568	n:4940000
FAM21C   4940000 perm   9725 sec   (508 perm/sec)   p_kst 3.174089e-04   p_cons 4.743787e-01   p_joint 3.050607e-04

Joint ci ratio: 1.008629e-01	ci left: 2.896618e-04	ci right 3.206246e-04	k: 1509	n:4950000
Cons ci ratio: 1.854625e-03	ci left: 4.739400e-01	ci right 4.748200e-01	k: 2348181	n:4950000
KS ci ratio: 9.882177e-02	ci left: 3.020714e-04	ci right 3.336694e-04	k: 1572	n:4950000
FAM21C   4950000 perm   9762 sec   (507 perm/sec)   p_kst 3.175758e-04   p_cons 4.743800e-01   p_joint 3.048485e-04

Joint ci ratio: 1.008295e-01	ci left: 2.892743e-04	ci right 3.201849e-04	k: 1510	n:4960000
Cons ci ratio: 1.852730e-03	ci left: 4.739470e-01	ci right 4.748261e-01	k: 2352957	n:4960000
KS ci ratio: 9.875902e-02	ci left: 3.018556e-04	ci right 3.334099e-04	k: 1574	n:4960000
FAM21C   4960000 perm   9800 sec   (506 perm/sec)   p_kst 3.173387e-04   p_cons 4.743865e-01   p_joint 3.044355e-04

Joint ci ratio: 1.006963e-01	ci left: 2.894768e-04	ci right 3.203658e-04	k: 1514	n:4970000
Cons ci ratio: 1.850809e-03	ci left: 4.739627e-01	ci right 4.748409e-01	k: 2357777	n:4970000
KS ci ratio: 9.860262e-02	ci left: 3.022295e-04	ci right 3.337699e-04	k: 1579	n:4970000
FAM21C   4970000 perm   9838 sec   (505 perm/sec)   p_kst 3.177062e-04   p_cons 4.744018e-01   p_joint 3.046278e-04

Joint ci ratio: 1.005967e-01	ci left: 2.894828e-04	ci right 3.203400e-04	k: 1517	n:4980000
Cons ci ratio: 1.848961e-03	ci left: 4.739599e-01	ci right 4.748373e-01	k: 2362505	n:4980000
KS ci ratio: 9.850914e-02	ci left: 3.022102e-04	ci right 3.337169e-04	k: 1582	n:4980000
FAM21C   4980000 perm   9875 sec   (504 perm/sec)   p_kst 3.176707e-04   p_cons 4.743986e-01   p_joint 3.046185e-04

Joint ci ratio: 1.005306e-01	ci left: 2.892934e-04	ci right 3.201089e-04	k: 1519	n:4990000
Cons ci ratio: 1.847125e-03	ci left: 4.739558e-01	ci right 4.748322e-01	k: 2367226	n:4990000
KS ci ratio: 9.838491e-02	ci left: 3.023864e-04	ci right 3.338695e-04	k: 1586	n:4990000
FAM21C   4990000 perm   9913 sec   (503 perm/sec)   p_kst 3.178357e-04   p_cons 4.743940e-01   p_joint 3.044088e-04

Joint ci ratio: 1.004315e-01	ci left: 2.892997e-04	ci right 3.200838e-04	k: 1522	n:5000000
Cons ci ratio: 1.845270e-03	ci left: 4.739580e-01	ci right 4.748336e-01	k: 2371979	n:5000000
KS ci ratio: 9.823027e-02	ci left: 3.027570e-04	ci right 3.342263e-04	k: 1591	n:5000000
FAM21C   5000000 perm   9951 sec   (502 perm/sec)   p_kst 3.182000e-04   p_cons 4.743958e-01   p_joint 3.044000e-04

Outputting figure to mutsig2_images.part000000000061/FAM21C.2_4083_5000000_0.0003182_0.4744_0.0003044.png
                gene_name: FAM21C
               theta_stop: 0.10 
                    nperm: 5000000 
                     p_ks: 0.00032 
        ci_ks_bounds_left: 0.00030 
       ci_ks_bounds_right: 0.00033 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.00030 
     ci_joint_bounds_left: 0.00029 
    ci_joint_bounds_right: 0.00032 

Current progress: 67 percent done.
FAM47C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.328544e-02	ci left: 5.712572e-01	ci right 5.906956e-01	k: 5810	n:10000
Cons ci ratio: 5.323349e-02	ci left: 3.421367e-01	ci right 3.609498e-01	k: 3515	n:10000
KS ci ratio: 3.089463e-02	ci left: 6.071884e-01	ci right 6.263435e-01	k: 6168	n:10000
FAM47C   10000 perm   2 sec   (6533 perm/sec)   p_kst 6.168000e-01   p_cons 3.515000e-01   p_joint 5.810000e-01

Outputting figure to mutsig2_images.part000000000061/FAM47C.2_3112_10000_0.6168_0.3515_0.581.png
                gene_name: FAM47C
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000061
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 61 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1646>
Subject: Job 9877137: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1646>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000062> was used as the working directory.
Started at Fri Oct  5 22:39:03 2012
Results reported at Sat Oct  6 02:43:38 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000062.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000062.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 62  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000062.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  14822.09 sec.
    Max Memory :      2366 MB
    Max Swap   :      4742 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
62
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 62
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 62: processing genes 5532 - 5622
Calculating significance of each gene.
Using projection method.
5532	FAM54A	1
5533	FAM54B	1
5534	FAM55A	1
5535	FAM55B	1
5536	FAM55C	1
5537	FAM55D	1
5538	FAM57A	5.411601e-02
5539	FAM57B	1
5540	FAM58A	1
5541	FAM58B	1
5542	FAM59A	1
5543	FAM5B	7.802958e-02
5544	FAM5C	4.186035e-02
5545	FAM60A	1
5546	FAM63A	1
5547	FAM63B	1
5548	FAM64A	1
5549	FAM65A	1
5550	FAM65B	1
5551	FAM65C	1
5552	FAM69A	1
5553	FAM69B	8.166147e-02
5554	FAM69C	1
5555	FAM70A	1
5556	FAM70B	1
5557	FAM71A	1
5558	FAM71B	2.879538e-02
5559	FAM71C	1
5560	FAM71D	1
5561	FAM71E1	1
5562	FAM71F1	1
5563	FAM71F2	1
5564	FAM72A	1
5565	FAM72B	1
5566	FAM72D	1
5567	FAM73A	1
5568	FAM73B	1
5569	FAM75A3	1
5570	FAM75A6	2.119606e-02
5571	FAM75C1	3.413541e-02
5572	FAM76A	1
5573	FAM76B	1
5574	FAM78A	1
5575	FAM78B	1.407105e-02
5576	FAM81A	1
5577	FAM81B	2.920493e-02
5578	FAM82A1	1
5579	FAM82A2	1
5580	FAM82B	1
5581	FAM83A	1.327199e-01
5582	FAM83B	4.639365e-03
5583	FAM83C	1.915720e-01
5584	FAM83D	1
5585	FAM83E	1
5586	FAM83F	1
5587	FAM83G	2.292801e-01
5588	FAM83H	6.682836e-02
5589	FAM84A	1
5590	FAM84B	1
5591	FAM86A	5.071661e-02
5592	FAM86B1	1
5593	FAM86B2	1
5594	FAM86C	1
5595	FAM89A	1
5596	FAM89B	1
5597	FAM8A1	1
5598	FAM90A1	9.294816e-02
5599	FAM91A1	2.136146e-01
5600	FAM92A1	1
5601	FAM92B	1
5602	FAM96A	1
5603	FAM96B	1
5604	FAM98A	1
5605	FAM98B	1
5606	FAM98C	9.091393e-02
5607	FAM9A	1
5608	FAM9B	1
5609	FAM9C	1
5610	FANCA	1
5611	FANCB	1
5612	FANCC	1
5613	FANCD2	9.383751e-02
5614	FANCE	1
5615	FANCF	1
5616	FANCG	1.790315e-01
5617	FANCI	2.848486e-01
5618	FANCL	1
5619	FANCM	2.233900e-01
5620	FANK1	1
5621	FAP	1
5622	FAR1	1
Done

Running MutSig 2:
Scatter job 62: processing genes 5532 - 5622
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
FAM83B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.211153e-02	ci left: 1.779240e-01	ci right 1.932596e-01	k: 1855	n:10000
Cons ci ratio: 2.911757e-01	ci left: 1.520682e-02	ci right 2.047941e-02	k: 177	n:10000
KS ci ratio: 2.147867e-02	ci left: 7.607128e-01	ci right 7.773302e-01	k: 7691	n:10000
FAM83B   10000 perm   2 sec   (4726 perm/sec)   p_kst 7.691000e-01   p_cons 1.770000e-02   p_joint 1.855000e-01

Joint ci ratio: 1.011086e-01	ci left: 6.635513e-02	ci right 7.347052e-02	k: 1397	n:20000
Cons ci ratio: 2.058973e-01	ci left: 1.596539e-02	ci right 1.967668e-02	k: 355	n:20000
KS ci ratio: 1.509576e-02	ci left: 7.653646e-01	ci right 7.770564e-01	k: 15425	n:20000
FAM83B   20000 perm   8 sec   (2568 perm/sec)   p_kst 7.712500e-01   p_cons 1.775000e-02   p_joint 6.985000e-02

Joint ci ratio: 7.662683e-02	ci left: 7.715067e-02	ci right 8.333091e-02	k: 2406	n:30000
Cons ci ratio: 1.649973e-01	ci left: 1.694132e-02	ci right 2.001961e-02	k: 553	n:30000
KS ci ratio: 1.237044e-02	ci left: 7.651617e-01	ci right 7.747193e-01	k: 23099	n:30000
FAM83B   30000 perm   11 sec   (2839 perm/sec)   p_kst 7.699667e-01   p_cons 1.843333e-02   p_joint 8.020000e-02

Joint ci ratio: 8.791397e-02	ci left: 4.526460e-02	ci right 4.945143e-02	k: 1893	n:40000
Cons ci ratio: 1.456973e-01	ci left: 1.647862e-02	ci right 1.909206e-02	k: 710	n:40000
KS ci ratio: 1.070908e-02	ci left: 7.659445e-01	ci right 7.742162e-01	k: 30804	n:40000
FAM83B   40000 perm   13 sec   (3001 perm/sec)   p_kst 7.701000e-01   p_cons 1.775000e-02   p_joint 4.732500e-02

Joint ci ratio: 6.599040e-02	ci left: 6.374053e-02	ci right 6.811003e-02	k: 3295	n:50000
Cons ci ratio: 1.380937e-01	ci left: 1.476378e-02	ci right 1.697294e-02	k: 792	n:50000
KS ci ratio: 9.570920e-03	ci left: 7.666678e-01	ci right 7.740608e-01	k: 38519	n:50000
FAM83B   50000 perm   16 sec   (3063 perm/sec)   p_kst 7.703800e-01   p_cons 1.584000e-02   p_joint 6.590000e-02

Joint ci ratio: 7.428648e-02	ci left: 4.270008e-02	ci right 4.601084e-02	k: 2660	n:60000
Cons ci ratio: 1.249721e-01	ci left: 1.512420e-02	ci right 1.715632e-02	k: 967	n:60000
KS ci ratio: 8.714704e-03	ci left: 7.679012e-01	ci right 7.746392e-01	k: 46277	n:60000
FAM83B   60000 perm   19 sec   (3092 perm/sec)   p_kst 7.712833e-01   p_cons 1.611667e-02   p_joint 4.433333e-02

Joint ci ratio: 6.069190e-02	ci left: 5.453333e-02	ci right 5.796071e-02	k: 3936	n:70000
Cons ci ratio: 1.157192e-01	ci left: 1.519447e-02	ci right 1.707452e-02	k: 1128	n:70000
KS ci ratio: 8.045323e-03	ci left: 7.691607e-01	ci right 7.753881e-01	k: 54060	n:70000
FAM83B   70000 perm   23 sec   (3096 perm/sec)   p_kst 7.722857e-01   p_cons 1.611429e-02   p_joint 5.622857e-02

Joint ci ratio: 5.657539e-02	ci left: 5.500860e-02	ci right 5.822365e-02	k: 4528	n:80000
Cons ci ratio: 1.082576e-01	ci left: 1.525135e-02	ci right 1.700900e-02	k: 1289	n:80000
KS ci ratio: 7.510158e-03	ci left: 7.700937e-01	ci right 7.759115e-01	k: 61841	n:80000
FAM83B   80000 perm   26 sec   (3098 perm/sec)   p_kst 7.730125e-01   p_cons 1.611250e-02   p_joint 5.660000e-02

Joint ci ratio: 5.320781e-02	ci left: 5.536240e-02	ci right 5.839957e-02	k: 5118	n:90000
Cons ci ratio: 1.015784e-01	ci left: 1.545028e-02	ci right 1.711444e-02	k: 1464	n:90000
KS ci ratio: 7.080897e-03	ci left: 7.702490e-01	ci right 7.757334e-01	k: 69570	n:90000
FAM83B   90000 perm   29 sec   (3091 perm/sec)   p_kst 7.730000e-01   p_cons 1.626667e-02   p_joint 5.686667e-02

Joint ci ratio: 4.654540e-02	ci left: 6.468638e-02	ci right 6.777884e-02	k: 6622	n:100000
Cons ci ratio: 9.724326e-02	ci left: 1.521185e-02	ci right 1.677640e-02	k: 1598	n:100000
KS ci ratio: 6.718485e-03	ci left: 7.703406e-01	ci right 7.755435e-01	k: 77295	n:100000
FAM83B   100000 perm   32 sec   (3087 perm/sec)   p_kst 7.729500e-01   p_cons 1.598000e-02   p_joint 6.622000e-02

Outputting figure to mutsig2_images.part000000000062/FAM83B.3_3052_100000_0.77295_0.01598_0.06622.png
                gene_name: FAM83B
               theta_stop: 0.097 
                    nperm: 100000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.066 
     ci_joint_bounds_left: 0.065 
    ci_joint_bounds_right: 0.068 

Current progress: 20 percent done.
FAM75A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.530263e-02	ci left: 8.610043e-01	ci right 8.743807e-01	k: 8678	n:10000
Cons ci ratio: 3.977048e-02	ci left: 4.828546e-01	ci right 5.025497e-01	k: 4927	n:10000
KS ci ratio: 2.318085e-02	ci left: 7.321932e-01	ci right 7.494663e-01	k: 7409	n:10000
FAM75A6   10000 perm   2 sec   (4740 perm/sec)   p_kst 7.409000e-01   p_cons 4.927000e-01   p_joint 8.678000e-01

Outputting figure to mutsig2_images.part000000000062/FAM75A6.2_4048_10000_0.7409_0.4927_0.8678.png
                gene_name: FAM75A6
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 40 percent done.
FAM75C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.805205e-01	ci left: 8.505237e-03	ci right 1.258745e-02	k: 104	n:10000
Cons ci ratio: 5.260673e-03	ci left: 9.796277e-01	ci right 9.848860e-01	k: 9824	n:10000
KS ci ratio: 1.306013e+00	ci left: 3.454445e-04	ci right 1.575707e-03	k: 8	n:10000
FAM75C1   10000 perm   2 sec   (5008 perm/sec)   p_kst 8.000000e-04   p_cons 9.824000e-01   p_joint 1.040000e-02

Joint ci ratio: 4.780895e-01	ci left: 2.553111e-03	ci right 4.196522e-03	k: 66	n:20000
Cons ci ratio: 3.650168e-03	ci left: 9.811116e-01	ci right 9.847461e-01	k: 19660	n:20000
KS ci ratio: 1.086832e+00	ci left: 3.100660e-04	ci right 1.047844e-03	k: 12	n:20000
FAM75C1   20000 perm   4 sec   (4553 perm/sec)   p_kst 6.000000e-04   p_cons 9.830000e-01   p_joint 3.300000e-03

Joint ci ratio: 2.865312e-01	ci left: 5.312224e-03	ci right 7.118745e-03	k: 185	n:30000
Cons ci ratio: 2.981957e-03	ci left: 9.814381e-01	ci right 9.844006e-01	k: 29489	n:30000
KS ci ratio: 8.551005e-01	ci left: 4.072634e-04	ci right 1.029426e-03	k: 20	n:30000
FAM75C1   30000 perm   7 sec   (4342 perm/sec)   p_kst 6.666667e-04   p_cons 9.829667e-01   p_joint 6.166667e-03

Joint ci ratio: 2.555046e-01	ci left: 5.102800e-03	ci right 6.620287e-03	k: 233	n:40000
Cons ci ratio: 2.556079e-03	ci left: 9.819960e-01	ci right 9.845331e-01	k: 39332	n:40000
KS ci ratio: 7.405418e-01	ci left: 4.448749e-04	ci right 9.819388e-04	k: 27	n:40000
FAM75C1   40000 perm   10 sec   (4204 perm/sec)   p_kst 6.750000e-04   p_cons 9.833000e-01   p_joint 5.825000e-03

Joint ci ratio: 2.429429e-01	ci left: 4.550863e-03	ci right 5.827623e-03	k: 258	n:50000
Cons ci ratio: 2.298390e-03	ci left: 9.819524e-01	ci right 9.842310e-01	k: 49156	n:50000
KS ci ratio: 6.821524e-01	ci left: 4.377994e-04	ci right 9.033700e-04	k: 32	n:50000
FAM75C1   50000 perm   12 sec   (4104 perm/sec)   p_kst 6.400000e-04   p_cons 9.831200e-01   p_joint 5.160000e-03

Joint ci ratio: 1.885800e-01	ci left: 6.475540e-03	ci right 7.839451e-03	k: 428	n:60000
Cons ci ratio: 2.093937e-03	ci left: 9.821224e-01	ci right 9.841971e-01	k: 58991	n:60000
KS ci ratio: 6.119868e-01	ci left: 4.763178e-04	ci right 9.077013e-04	k: 40	n:60000
FAM75C1   60000 perm   15 sec   (4005 perm/sec)   p_kst 6.666667e-04   p_cons 9.831833e-01   p_joint 7.133333e-03

Joint ci ratio: 1.715953e-01	ci left: 6.764772e-03	ci right 8.047997e-03	k: 517	n:70000
Cons ci ratio: 1.929957e-03	ci left: 9.823526e-01	ci right 9.842641e-01	k: 68833	n:70000
KS ci ratio: 5.487059e-01	ci left: 5.302017e-04	ci right 9.415896e-04	k: 50	n:70000
FAM75C1   70000 perm   18 sec   (3921 perm/sec)   p_kst 7.142857e-04   p_cons 9.833286e-01   p_joint 7.385714e-03

Joint ci ratio: 1.612000e-01	ci left: 6.745777e-03	ci right 7.940369e-03	k: 586	n:80000
Cons ci ratio: 1.809538e-03	ci left: 9.823367e-01	ci right 9.841280e-01	k: 78660	n:80000
KS ci ratio: 5.145314e-01	ci left: 5.396838e-04	ci right 9.230292e-04	k: 57	n:80000
FAM75C1   80000 perm   21 sec   (3845 perm/sec)   p_kst 7.125000e-04   p_cons 9.832500e-01   p_joint 7.325000e-03

Joint ci ratio: 1.548871e-01	ci left: 6.519102e-03	ci right 7.624138e-03	k: 635	n:90000
Cons ci ratio: 1.701664e-03	ci left: 9.824756e-01	ci right 9.841597e-01	k: 88500	n:90000
KS ci ratio: 4.898230e-01	ci left: 5.379398e-04	ci right 8.955165e-04	k: 63	n:90000
FAM75C1   90000 perm   24 sec   (3774 perm/sec)   p_kst 7.000000e-04   p_cons 9.833333e-01   p_joint 7.055556e-03

Joint ci ratio: 1.438613e-01	ci left: 6.839564e-03	ci right 7.909308e-03	k: 736	n:100000
Cons ci ratio: 1.617405e-03	ci left: 9.824559e-01	ci right 9.840559e-01	k: 98327	n:100000
KS ci ratio: 4.586315e-01	ci left: 5.633970e-04	ci right 9.066362e-04	k: 72	n:100000
FAM75C1   100000 perm   27 sec   (3688 perm/sec)   p_kst 7.200000e-04   p_cons 9.832700e-01   p_joint 7.360000e-03

Joint ci ratio: 1.408632e-01	ci left: 6.498251e-03	ci right 7.491646e-03	k: 768	n:110000
Cons ci ratio: 1.545372e-03	ci left: 9.824231e-01	ci right 9.839513e-01	k: 108152	n:110000
KS ci ratio: 4.494974e-01	ci left: 5.363298e-04	ci right 8.545911e-04	k: 75	n:110000
FAM75C1   110000 perm   30 sec   (3642 perm/sec)   p_kst 6.818182e-04   p_cons 9.832000e-01   p_joint 6.981818e-03

Joint ci ratio: 1.315819e-01	ci left: 6.858366e-03	ci right 7.832336e-03	k: 880	n:120000
Cons ci ratio: 1.482159e-03	ci left: 9.823973e-01	ci right 9.838625e-01	k: 117977	n:120000
KS ci ratio: 4.408874e-01	ci left: 5.138309e-04	ci right 8.111640e-04	k: 78	n:120000
FAM75C1   120000 perm   33 sec   (3583 perm/sec)   p_kst 6.500000e-04   p_cons 9.831417e-01   p_joint 7.333333e-03

Joint ci ratio: 1.414027e-01	ci left: 5.461207e-03	ci right 6.299525e-03	k: 763	n:130000
Cons ci ratio: 1.417505e-03	ci left: 9.825808e-01	ci right 9.839821e-01	k: 127828	n:130000
KS ci ratio: 4.225630e-01	ci left: 5.223014e-04	ci right 8.084284e-04	k: 85	n:130000
FAM75C1   130000 perm   37 sec   (3527 perm/sec)   p_kst 6.538462e-04   p_cons 9.832923e-01   p_joint 5.869231e-03

Joint ci ratio: 1.373353e-01	ci left: 5.388222e-03	ci right 6.189598e-03	k: 809	n:140000
Cons ci ratio: 1.369159e-03	ci left: 9.825277e-01	ci right 9.838808e-01	k: 137650	n:140000
KS ci ratio: 4.130700e-01	ci left: 5.105609e-04	ci right 7.822438e-04	k: 89	n:140000
FAM75C1   140000 perm   40 sec   (3474 perm/sec)   p_kst 6.357143e-04   p_cons 9.832143e-01   p_joint 5.778571e-03

Joint ci ratio: 1.170630e-01	ci left: 6.985439e-03	ci right 7.860430e-03	k: 1112	n:150000
Cons ci ratio: 1.319814e-03	ci left: 9.826252e-01	ci right 9.839294e-01	k: 147493	n:150000
KS ci ratio: 3.938435e-01	ci left: 5.304384e-04	ci right 7.961472e-04	k: 98	n:150000
FAM75C1   150000 perm   44 sec   (3422 perm/sec)   p_kst 6.533333e-04   p_cons 9.832867e-01   p_joint 7.413333e-03

Joint ci ratio: 1.128774e-01	ci left: 7.058768e-03	ci right 7.909225e-03	k: 1196	n:160000
Cons ci ratio: 1.276885e-03	ci left: 9.826729e-01	ci right 9.839345e-01	k: 157330	n:160000
KS ci ratio: 3.861235e-01	ci left: 5.198340e-04	ci right 7.738287e-04	k: 102	n:160000
FAM75C1   160000 perm   47 sec   (3370 perm/sec)   p_kst 6.375000e-04   p_cons 9.833125e-01   p_joint 7.475000e-03

Joint ci ratio: 1.093260e-01	ci left: 7.095347e-03	ci right 7.921582e-03	k: 1275	n:170000
Cons ci ratio: 1.239885e-03	ci left: 9.826616e-01	ci right 9.838865e-01	k: 167158	n:170000
KS ci ratio: 3.753464e-01	ci left: 5.211723e-04	ci right 7.669654e-04	k: 108	n:170000
FAM75C1   170000 perm   51 sec   (3323 perm/sec)   p_kst 6.352941e-04   p_cons 9.832824e-01   p_joint 7.500000e-03

Joint ci ratio: 1.067669e-01	ci left: 7.036286e-03	ci right 7.835257e-03	k: 1337	n:180000
Cons ci ratio: 1.201644e-03	ci left: 9.827709e-01	ci right 9.839579e-01	k: 177007	n:180000
KS ci ratio: 3.702889e-01	ci left: 5.073226e-04	ci right 7.425790e-04	k: 111	n:180000
FAM75C1   180000 perm   55 sec   (3276 perm/sec)   p_kst 6.166667e-04   p_cons 9.833722e-01   p_joint 7.427778e-03

Joint ci ratio: 1.031253e-01	ci left: 7.157980e-03	ci right 7.941368e-03	k: 1433	n:190000
Cons ci ratio: 1.170849e-03	ci left: 9.827512e-01	ci right 9.839077e-01	k: 186834	n:190000
KS ci ratio: 3.622916e-01	ci left: 5.045151e-04	ci right 7.322236e-04	k: 116	n:190000
FAM75C1   190000 perm   59 sec   (3230 perm/sec)   p_kst 6.105263e-04   p_cons 9.833368e-01   p_joint 7.542105e-03

Joint ci ratio: 1.018998e-01	ci left: 6.970560e-03	ci right 7.723825e-03	k: 1468	n:200000
Cons ci ratio: 1.142476e-03	ci left: 9.827288e-01	ci right 9.838571e-01	k: 196660	n:200000
KS ci ratio: 3.577371e-01	ci left: 4.929321e-04	ci right 7.119646e-04	k: 119	n:200000
FAM75C1   200000 perm   63 sec   (3186 perm/sec)   p_kst 5.950000e-04   p_cons 9.833000e-01   p_joint 7.340000e-03

Joint ci ratio: 1.084679e-01	ci left: 5.845556e-03	ci right 6.520564e-03	k: 1297	n:210000
Cons ci ratio: 1.112670e-03	ci left: 9.828106e-01	ci right 9.839094e-01	k: 206507	n:210000
KS ci ratio: 3.505103e-01	ci left: 4.911508e-04	ci right 7.039806e-04	k: 124	n:210000
FAM75C1   210000 perm   67 sec   (3151 perm/sec)   p_kst 5.904762e-04   p_cons 9.833667e-01   p_joint 6.176190e-03

Joint ci ratio: 1.059666e-01	ci left: 5.854112e-03	ci right 6.513547e-03	k: 1359	n:220000
Cons ci ratio: 1.088691e-03	ci left: 9.827743e-01	ci right 9.838493e-01	k: 216330	n:220000
KS ci ratio: 3.410891e-01	ci left: 4.978814e-04	ci right 7.065515e-04	k: 131	n:220000
FAM75C1   220000 perm   71 sec   (3113 perm/sec)   p_kst 5.954545e-04   p_cons 9.833182e-01   p_joint 6.177273e-03

Joint ci ratio: 1.040364e-01	ci left: 5.815495e-03	ci right 6.457917e-03	k: 1410	n:230000
Cons ci ratio: 1.067035e-03	ci left: 9.827150e-01	ci right 9.837684e-01	k: 226147	n:230000
KS ci ratio: 3.360371e-01	ci left: 4.921471e-04	ci right 6.946966e-04	k: 135	n:230000
FAM75C1   230000 perm   75 sec   (3077 perm/sec)   p_kst 5.869565e-04   p_cons 9.832478e-01   p_joint 6.130435e-03

Joint ci ratio: 1.018232e-01	ci left: 5.824867e-03	ci right 6.453817e-03	k: 1472	n:240000
Cons ci ratio: 1.045023e-03	ci left: 9.827117e-01	ci right 9.837433e-01	k: 235976	n:240000
KS ci ratio: 3.277085e-01	ci left: 4.983781e-04	ci right 6.973385e-04	k: 142	n:240000
FAM75C1   240000 perm   79 sec   (3046 perm/sec)   p_kst 5.916667e-04   p_cons 9.832333e-01   p_joint 6.133333e-03

Joint ci ratio: 1.056941e-01	ci left: 5.182676e-03	ci right 5.764879e-03	k: 1367	n:250000
Cons ci ratio: 1.023946e-03	ci left: 9.827210e-01	ci right 9.837317e-01	k: 245808	n:250000
KS ci ratio: 3.254432e-01	ci left: 4.857866e-04	ci right 6.780994e-04	k: 144	n:250000
FAM75C1   250000 perm   83 sec   (3008 perm/sec)   p_kst 5.760000e-04   p_cons 9.832320e-01   p_joint 5.468000e-03

Joint ci ratio: 8.575261e-02	ci left: 7.631033e-03	ci right 8.318465e-03	k: 2072	n:260000
Cons ci ratio: 1.004680e-03	ci left: 9.827103e-01	ci right 9.837019e-01	k: 255635	n:260000
KS ci ratio: 3.189118e-01	ci left: 4.883136e-04	ci right 6.769552e-04	k: 150	n:260000
FAM75C1   260000 perm   88 sec   (2969 perm/sec)   p_kst 5.769231e-04   p_cons 9.832115e-01   p_joint 7.969231e-03

Joint ci ratio: 8.402637e-02	ci left: 7.660163e-03	ci right 8.335647e-03	k: 2158	n:270000
Cons ci ratio: 9.862398e-04	ci left: 9.827082e-01	ci right 9.836814e-01	k: 265464	n:270000
KS ci ratio: 3.117666e-01	ci left: 4.941027e-04	ci right 6.798533e-04	k: 157	n:270000
FAM75C1   270000 perm   92 sec   (2931 perm/sec)   p_kst 5.814815e-04   p_cons 9.832000e-01   p_joint 7.992593e-03

Joint ci ratio: 8.467315e-02	ci left: 7.274650e-03	ci right 7.921319e-03	k: 2126	n:280000
Cons ci ratio: 9.707651e-04	ci left: 9.826375e-01	ci right 9.835953e-01	k: 275274	n:280000
KS ci ratio: 3.060104e-01	ci left: 4.962242e-04	ci right 6.786569e-04	k: 163	n:280000
FAM75C1   280000 perm   96 sec   (2902 perm/sec)   p_kst 5.821429e-04   p_cons 9.831214e-01   p_joint 7.592857e-03

Joint ci ratio: 8.342906e-02	ci left: 7.239845e-03	ci right 7.873504e-03	k: 2190	n:290000
Cons ci ratio: 9.553842e-04	ci left: 9.825928e-01	ci right 9.835354e-01	k: 285090	n:290000
KS ci ratio: 3.005616e-01	ci left: 4.982286e-04	ci right 6.775140e-04	k: 169	n:290000
FAM75C1   290000 perm   101 sec   (2877 perm/sec)   p_kst 5.827586e-04   p_cons 9.830690e-01   p_joint 7.551724e-03

Joint ci ratio: 8.153082e-02	ci left: 7.334783e-03	ci right 7.961451e-03	k: 2293	n:300000
Cons ci ratio: 9.389177e-04	ci left: 9.826155e-01	ci right 9.835418e-01	k: 294925	n:300000
KS ci ratio: 2.970877e-01	ci left: 4.939547e-04	ci right 6.692605e-04	k: 173	n:300000
FAM75C1   300000 perm   105 sec   (2847 perm/sec)   p_kst 5.766667e-04   p_cons 9.830833e-01   p_joint 7.643333e-03

Joint ci ratio: 8.016188e-02	ci left: 7.347866e-03	ci right 7.964618e-03	k: 2372	n:310000
Cons ci ratio: 9.232738e-04	ci left: 9.826368e-01	ci right 9.835477e-01	k: 304760	n:310000
KS ci ratio: 2.904840e-01	ci left: 5.019260e-04	ci right 6.753736e-04	k: 181	n:310000
FAM75C1   310000 perm   110 sec   (2814 perm/sec)   p_kst 5.838710e-04   p_cons 9.830968e-01   p_joint 7.651613e-03

Joint ci ratio: 8.039370e-02	ci left: 7.078396e-03	ci right 7.674327e-03	k: 2359	n:320000
Cons ci ratio: 9.111170e-04	ci left: 9.825556e-01	ci right 9.834543e-01	k: 314563	n:320000
KS ci ratio: 2.873444e-01	ci left: 4.978349e-04	ci right 6.676718e-04	k: 185	n:320000
FAM75C1   320000 perm   115 sec   (2782 perm/sec)   p_kst 5.781250e-04   p_cons 9.830094e-01   p_joint 7.371875e-03

Joint ci ratio: 1.865416e-01	ci left: 1.211716e-03	ci right 1.463838e-03	k: 440	n:330000
Cons ci ratio: 8.957454e-04	ci left: 9.826176e-01	ci right 9.835011e-01	k: 324411	n:330000
KS ci ratio: 2.835587e-01	ci left: 4.968159e-04	ci right 6.636727e-04	k: 190	n:330000
FAM75C1   330000 perm   120 sec   (2750 perm/sec)   p_kst 5.757576e-04   p_cons 9.830636e-01   p_joint 1.333333e-03

Joint ci ratio: 1.840547e-01	ci left: 1.209734e-03	ci right 1.457713e-03	k: 452	n:340000
Cons ci ratio: 8.841568e-04	ci left: 9.825599e-01	ci right 9.834319e-01	k: 334220	n:340000
KS ci ratio: 2.806361e-01	ci left: 4.931360e-04	ci right 6.567479e-04	k: 194	n:340000
FAM75C1   340000 perm   125 sec   (2720 perm/sec)   p_kst 5.705882e-04   p_cons 9.830000e-01   p_joint 1.329412e-03

Joint ci ratio: 1.816646e-01	ci left: 1.207887e-03	ci right 1.451918e-03	k: 464	n:350000
Cons ci ratio: 8.721770e-04	ci left: 9.825374e-01	ci right 9.833975e-01	k: 344040	n:350000
KS ci ratio: 2.778020e-01	ci left: 4.896747e-04	ci right 6.502106e-04	k: 198	n:350000
FAM75C1   350000 perm   130 sec   (2693 perm/sec)   p_kst 5.657143e-04   p_cons 9.829714e-01   p_joint 1.325714e-03

Joint ci ratio: 1.795538e-01	ci left: 1.203508e-03	ci right 1.443523e-03	k: 475	n:360000
Cons ci ratio: 8.598845e-04	ci left: 9.825471e-01	ci right 9.833951e-01	k: 353871	n:360000
KS ci ratio: 2.750521e-01	ci left: 4.864136e-04	ci right 6.440287e-04	k: 202	n:360000
FAM75C1   360000 perm   135 sec   (2665 perm/sec)   p_kst 5.611111e-04   p_cons 9.829750e-01   p_joint 1.319444e-03

Joint ci ratio: 1.771511e-01	ci left: 1.204548e-03	ci right 1.441211e-03	k: 488	n:370000
Cons ci ratio: 8.477551e-04	ci left: 9.825701e-01	ci right 9.834061e-01	k: 363707	n:370000
KS ci ratio: 2.717263e-01	ci left: 4.858545e-04	ci right 6.410601e-04	k: 207	n:370000
FAM75C1   370000 perm   140 sec   (2634 perm/sec)   p_kst 5.594595e-04   p_cons 9.829919e-01   p_joint 1.318919e-03

Joint ci ratio: 1.750170e-01	ci left: 1.203036e-03	ci right 1.436254e-03	k: 500	n:380000
Cons ci ratio: 8.355970e-04	ci left: 9.826133e-01	ci right 9.834372e-01	k: 373551	n:380000
KS ci ratio: 2.666460e-01	ci left: 4.927012e-04	ci right 6.466597e-04	k: 215	n:380000
FAM75C1   380000 perm   146 sec   (2605 perm/sec)   p_kst 5.657895e-04   p_cons 9.830289e-01   p_joint 1.315789e-03

Joint ci ratio: 1.716233e-01	ci left: 1.221248e-03	ci right 1.452930e-03	k: 520	n:390000
Cons ci ratio: 8.250849e-04	ci left: 9.826076e-01	ci right 9.834211e-01	k: 383377	n:390000
KS ci ratio: 2.618405e-01	ci left: 4.992222e-04	ci right 6.519467e-04	k: 223	n:390000
FAM75C1   390000 perm   152 sec   (2572 perm/sec)   p_kst 5.717949e-04   p_cons 9.830179e-01   p_joint 1.333333e-03

Joint ci ratio: 1.693628e-01	ci left: 1.224223e-03	ci right 1.453098e-03	k: 534	n:400000
Cons ci ratio: 8.141665e-04	ci left: 9.826351e-01	ci right 9.834379e-01	k: 393216	n:400000
KS ci ratio: 2.589664e-01	ci left: 4.984258e-04	ci right 6.489622e-04	k: 228	n:400000
FAM75C1   400000 perm   157 sec   (2542 perm/sec)   p_kst 5.700000e-04   p_cons 9.830400e-01   p_joint 1.335000e-03

Joint ci ratio: 1.665827e-01	ci left: 1.236422e-03	ci right 1.463402e-03	k: 552	n:410000
Cons ci ratio: 8.049040e-04	ci left: 9.826095e-01	ci right 9.834031e-01	k: 403034	n:410000
KS ci ratio: 2.561850e-01	ci left: 4.976769e-04	ci right 6.461146e-04	k: 233	n:410000
FAM75C1   410000 perm   163 sec   (2520 perm/sec)   p_kst 5.682927e-04   p_cons 9.830098e-01   p_joint 1.346341e-03

Joint ci ratio: 1.646586e-01	ci left: 1.236653e-03	ci right 1.460794e-03	k: 565	n:420000
Cons ci ratio: 7.954383e-04	ci left: 9.826069e-01	ci right 9.833912e-01	k: 412861	n:420000
KS ci ratio: 2.534913e-01	ci left: 4.969719e-04	ci right 6.433945e-04	k: 238	n:420000
FAM75C1   420000 perm   168 sec   (2495 perm/sec)   p_kst 5.666667e-04   p_cons 9.830024e-01   p_joint 1.345238e-03

Joint ci ratio: 1.633658e-01	ci left: 1.227964e-03	ci right 1.448611e-03	k: 574	n:430000
Cons ci ratio: 7.870642e-04	ci left: 9.825716e-01	ci right 9.833475e-01	k: 422674	n:430000
KS ci ratio: 2.524383e-01	ci left: 4.897704e-04	ci right 6.333776e-04	k: 240	n:430000
FAM75C1   430000 perm   174 sec   (2472 perm/sec)   p_kst 5.581395e-04   p_cons 9.829628e-01   p_joint 1.334884e-03

Joint ci ratio: 6.722665e-02	ci left: 7.410308e-03	ci right 7.928025e-03	k: 3373	n:440000
Cons ci ratio: 7.779425e-04	ci left: 9.825815e-01	ci right 9.833485e-01	k: 432506	n:440000
KS ci ratio: 2.483493e-01	ci left: 4.956805e-04	ci right 6.383028e-04	k: 248	n:440000
FAM75C1   440000 perm   180 sec   (2447 perm/sec)   p_kst 5.636364e-04   p_cons 9.829682e-01   p_joint 7.665909e-03

Joint ci ratio: 6.646271e-02	ci left: 7.416071e-03	ci right 7.928076e-03	k: 3451	n:450000
Cons ci ratio: 7.682112e-04	ci left: 9.826315e-01	ci right 9.833889e-01	k: 442356	n:450000
KS ci ratio: 2.463787e-01	ci left: 4.930032e-04	ci right 6.335572e-04	k: 252	n:450000
FAM75C1   450000 perm   186 sec   (2425 perm/sec)   p_kst 5.600000e-04   p_cons 9.830133e-01   p_joint 7.668889e-03

Joint ci ratio: 6.575238e-02	ci left: 7.415200e-03	ci right 7.921465e-03	k: 3526	n:460000
Cons ci ratio: 7.596230e-04	ci left: 9.826443e-01	ci right 9.833931e-01	k: 452190	n:460000
KS ci ratio: 2.439798e-01	ci left: 4.924875e-04	ci right 6.313203e-04	k: 257	n:460000
FAM75C1   460000 perm   192 sec   (2401 perm/sec)   p_kst 5.586957e-04   p_cons 9.830217e-01   p_joint 7.665217e-03

Joint ci ratio: 6.507346e-02	ci left: 7.412301e-03	ci right 7.912946e-03	k: 3600	n:470000
Cons ci ratio: 7.509809e-04	ci left: 9.826715e-01	ci right 9.834119e-01	k: 462031	n:470000
KS ci ratio: 2.398317e-01	ci left: 4.999976e-04	ci right 6.381949e-04	k: 266	n:470000
FAM75C1   470000 perm   198 sec   (2376 perm/sec)   p_kst 5.659574e-04   p_cons 9.830447e-01   p_joint 7.659574e-03

Joint ci ratio: 6.441515e-02	ci left: 7.409549e-03	ci right 7.904755e-03	k: 3674	n:480000
Cons ci ratio: 7.425330e-04	ci left: 9.827019e-01	ci right 9.834339e-01	k: 471874	n:480000
KS ci ratio: 2.380556e-01	ci left: 4.974154e-04	ci right 6.337306e-04	k: 270	n:480000
FAM75C1   480000 perm   204 sec   (2349 perm/sec)   p_kst 5.625000e-04   p_cons 9.830708e-01   p_joint 7.654167e-03

Joint ci ratio: 6.369941e-02	ci left: 7.425010e-03	ci right 7.915532e-03	k: 3757	n:490000
Cons ci ratio: 7.345876e-04	ci left: 9.827208e-01	ci right 9.834449e-01	k: 481712	n:490000
KS ci ratio: 2.367494e-01	ci left: 4.930222e-04	ci right 6.272835e-04	k: 273	n:490000
FAM75C1   490000 perm   211 sec   (2327 perm/sec)   p_kst 5.571429e-04   p_cons 9.830857e-01   p_joint 7.667347e-03

Joint ci ratio: 6.274416e-02	ci left: 7.502883e-03	ci right 7.990847e-03	k: 3872	n:500000
Cons ci ratio: 7.270663e-04	ci left: 9.827308e-01	ci right 9.834476e-01	k: 491546	n:500000
KS ci ratio: 2.333665e-01	ci left: 4.982198e-04	ci right 6.316781e-04	k: 281	n:500000
FAM75C1   500000 perm   217 sec   (2305 perm/sec)   p_kst 5.620000e-04   p_cons 9.830920e-01   p_joint 7.744000e-03

Joint ci ratio: 6.218518e-02	ci left: 7.490877e-03	ci right 7.973564e-03	k: 3942	n:510000
Cons ci ratio: 7.193042e-04	ci left: 9.827623e-01	ci right 9.834714e-01	k: 501391	n:510000
KS ci ratio: 2.317292e-01	ci left: 4.958369e-04	ci right 6.275916e-04	k: 285	n:510000
FAM75C1   510000 perm   223 sec   (2285 perm/sec)   p_kst 5.588235e-04   p_cons 9.831196e-01   p_joint 7.729412e-03

Joint ci ratio: 6.150971e-02	ci left: 7.511544e-03	ci right 7.990118e-03	k: 4029	n:520000
Cons ci ratio: 7.121139e-04	ci left: 9.827771e-01	ci right 9.834791e-01	k: 511228	n:520000
KS ci ratio: 2.309240e-01	ci left: 4.899247e-04	ci right 6.195915e-04	k: 287	n:520000
FAM75C1   520000 perm   229 sec   (2266 perm/sec)   p_kst 5.519231e-04   p_cons 9.831308e-01   p_joint 7.748077e-03

Joint ci ratio: 6.099030e-02	ci left: 7.498010e-03	ci right 7.971546e-03	k: 4098	n:530000
Cons ci ratio: 7.058167e-04	ci left: 9.827589e-01	ci right 9.834547e-01	k: 521048	n:530000
KS ci ratio: 2.281675e-01	ci left: 4.931290e-04	ci right 6.218667e-04	k: 294	n:530000
FAM75C1   530000 perm   236 sec   (2244 perm/sec)   p_kst 5.547170e-04   p_cons 9.831094e-01   p_joint 7.732075e-03

Joint ci ratio: 6.035990e-02	ci left: 7.516003e-03	ci right 7.985597e-03	k: 4184	n:540000
Cons ci ratio: 6.994877e-04	ci left: 9.827508e-01	ci right 9.834403e-01	k: 530873	n:540000
KS ci ratio: 2.255074e-01	ci left: 4.962235e-04	ci right 6.240488e-04	k: 301	n:540000
FAM75C1   540000 perm   243 sec   (2222 perm/sec)   p_kst 5.574074e-04   p_cons 9.830981e-01   p_joint 7.748148e-03

Joint ci ratio: 5.974865e-02	ci left: 7.533366e-03	ci right 7.999114e-03	k: 4270	n:550000
Cons ci ratio: 6.932498e-04	ci left: 9.827467e-01	ci right 9.834300e-01	k: 540700	n:550000
KS ci ratio: 2.247651e-01	ci left: 4.906324e-04	ci right 6.165438e-04	k: 303	n:550000
FAM75C1   550000 perm   250 sec   (2201 perm/sec)   p_kst 5.509091e-04   p_cons 9.830909e-01   p_joint 7.763636e-03

Joint ci ratio: 5.923786e-02	ci left: 7.529018e-03	ci right 7.990382e-03	k: 4344	n:560000
Cons ci ratio: 6.872865e-04	ci left: 9.827374e-01	ci right 9.834148e-01	k: 550524	n:560000
KS ci ratio: 2.225792e-01	ci left: 4.919851e-04	ci right 6.168476e-04	k: 309	n:560000
FAM75C1   560000 perm   257 sec   (2180 perm/sec)   p_kst 5.517857e-04   p_cons 9.830786e-01   p_joint 7.757143e-03

Joint ci ratio: 5.866642e-02	ci left: 7.543857e-03	ci right 8.001519e-03	k: 4429	n:570000
Cons ci ratio: 6.817613e-04	ci left: 9.827142e-01	ci right 9.833861e-01	k: 560340	n:570000
KS ci ratio: 2.218654e-01	ci left: 4.866671e-04	ci right 6.097297e-04	k: 311	n:570000
FAM75C1   570000 perm   264 sec   (2162 perm/sec)   p_kst 5.456140e-04   p_cons 9.830526e-01   p_joint 7.770175e-03

Joint ci ratio: 5.817616e-02	ci left: 7.541211e-03	ci right 7.994761e-03	k: 4504	n:580000
Cons ci ratio: 6.764356e-04	ci left: 9.826884e-01	ci right 9.833550e-01	k: 570154	n:580000
KS ci ratio: 2.197622e-01	ci left: 4.880491e-04	ci right 6.101331e-04	k: 317	n:580000
FAM75C1   580000 perm   270 sec   (2144 perm/sec)   p_kst 5.465517e-04   p_cons 9.830241e-01   p_joint 7.765517e-03

Joint ci ratio: 5.769800e-02	ci left: 7.538671e-03	ci right 7.988217e-03	k: 4579	n:590000
Cons ci ratio: 6.708906e-04	ci left: 9.826806e-01	ci right 9.833418e-01	k: 579978	n:590000
KS ci ratio: 2.167162e-01	ci left: 4.941977e-04	ci right 6.158784e-04	k: 326	n:590000
FAM75C1   590000 perm   278 sec   (2125 perm/sec)   p_kst 5.525424e-04   p_cons 9.830136e-01   p_joint 7.761017e-03

Joint ci ratio: 5.708331e-02	ci left: 7.575662e-03	ci right 8.022443e-03	k: 4678	n:600000
Cons ci ratio: 6.654463e-04	ci left: 9.826748e-01	ci right 9.833305e-01	k: 589803	n:600000
KS ci ratio: 2.144330e-01	ci left: 4.969980e-04	ci right 6.179092e-04	k: 333	n:600000
FAM75C1   600000 perm   285 sec   (2105 perm/sec)   p_kst 5.550000e-04   p_cons 9.830050e-01   p_joint 7.796667e-03

Joint ci ratio: 5.654753e-02	ci left: 7.595302e-03	ci right 8.038899e-03	k: 4767	n:610000
Cons ci ratio: 6.598409e-04	ci left: 9.826841e-01	ci right 9.833343e-01	k: 599637	n:610000
KS ci ratio: 2.112925e-01	ci left: 5.043703e-04	ci right 6.250453e-04	k: 343	n:610000
FAM75C1   610000 perm   292 sec   (2089 perm/sec)   p_kst 5.622951e-04   p_cons 9.830115e-01   p_joint 7.814754e-03

Joint ci ratio: 5.604400e-02	ci left: 7.609556e-03	ci right 8.049900e-03	k: 4853	n:620000
Cons ci ratio: 6.546591e-04	ci left: 9.826784e-01	ci right 9.833235e-01	k: 609462	n:620000
KS ci ratio: 2.097736e-01	ci left: 5.038746e-04	ci right 6.234530e-04	k: 348	n:620000
FAM75C1   620000 perm   299 sec   (2071 perm/sec)   p_kst 5.612903e-04   p_cons 9.830032e-01   p_joint 7.827419e-03

Joint ci ratio: 5.569019e-02	ci left: 7.585805e-03	ci right 8.021914e-03	k: 4915	n:630000
Cons ci ratio: 6.487024e-04	ci left: 9.827194e-01	ci right 9.833587e-01	k: 619316	n:630000
KS ci ratio: 2.082869e-01	ci left: 5.033976e-04	ci right 6.219083e-04	k: 353	n:630000
FAM75C1   630000 perm   306 sec   (2056 perm/sec)   p_kst 5.603175e-04   p_cons 9.830413e-01   p_joint 7.801587e-03

Joint ci ratio: 5.517013e-02	ci left: 7.610578e-03	ci right 8.043895e-03	k: 5008	n:640000
Cons ci ratio: 6.433550e-04	ci left: 9.827355e-01	ci right 9.833695e-01	k: 629155	n:640000
KS ci ratio: 2.062574e-01	ci left: 5.059019e-04	ci right 6.236953e-04	k: 360	n:640000
FAM75C1   640000 perm   314 sec   (2038 perm/sec)   p_kst 5.625000e-04   p_cons 9.830547e-01   p_joint 7.825000e-03

Joint ci ratio: 5.471303e-02	ci left: 7.620948e-03	ci right 8.051148e-03	k: 5092	n:650000
Cons ci ratio: 6.380783e-04	ci left: 9.827542e-01	ci right 9.833830e-01	k: 638996	n:650000
KS ci ratio: 2.048438e-01	ci left: 5.054152e-04	ci right 6.221877e-04	k: 365	n:650000
FAM75C1   650000 perm   322 sec   (2021 perm/sec)   p_kst 5.615385e-04   p_cons 9.830708e-01   p_joint 7.833846e-03

Joint ci ratio: 5.421962e-02	ci left: 7.644472e-03	ci right 8.071986e-03	k: 5185	n:660000
Cons ci ratio: 6.331883e-04	ci left: 9.827586e-01	ci right 9.833826e-01	k: 648828	n:660000
KS ci ratio: 2.023703e-01	ci left: 5.106987e-04	ci right 6.270911e-04	k: 374	n:660000
FAM75C1   660000 perm   329 sec   (2005 perm/sec)   p_kst 5.666667e-04   p_cons 9.830727e-01   p_joint 7.856061e-03

Joint ci ratio: 5.461692e-02	ci left: 7.421407e-03	ci right 7.839583e-03	k: 5111	n:670000
Cons ci ratio: 6.277041e-04	ci left: 9.828006e-01	ci right 9.834191e-01	k: 658685	n:670000
KS ci ratio: 2.002452e-01	ci left: 5.144149e-04	ci right 6.302728e-04	k: 382	n:670000
FAM75C1   670000 perm   337 sec   (1988 perm/sec)   p_kst 5.701493e-04   p_cons 9.831119e-01   p_joint 7.628358e-03

Joint ci ratio: 5.350295e-02	ci left: 7.622742e-03	ci right 8.043232e-03	k: 5325	n:680000
Cons ci ratio: 6.222462e-04	ci left: 9.828472e-01	ci right 9.834604e-01	k: 668546	n:680000
KS ci ratio: 1.979327e-01	ci left: 5.194257e-04	ci right 6.348980e-04	k: 391	n:680000
FAM75C1   680000 perm   345 sec   (1972 perm/sec)   p_kst 5.750000e-04   p_cons 9.831559e-01   p_joint 7.830882e-03

Joint ci ratio: 5.316007e-02	ci left: 7.610933e-03	ci right 8.027998e-03	k: 5394	n:690000
Cons ci ratio: 6.178165e-04	ci left: 9.828443e-01	ci right 9.834531e-01	k: 678374	n:690000
KS ci ratio: 1.956984e-01	ci left: 5.242986e-04	ci right 6.393819e-04	k: 400	n:690000
FAM75C1   690000 perm   353 sec   (1956 perm/sec)   p_kst 5.797101e-04   p_cons 9.831507e-01   p_joint 7.817391e-03

Joint ci ratio: 5.277019e-02	ci left: 7.614978e-03	ci right 8.029111e-03	k: 5474	n:700000
Cons ci ratio: 6.132156e-04	ci left: 9.828559e-01	ci right 9.834601e-01	k: 688212	n:700000
KS ci ratio: 1.940122e-01	ci left: 5.263209e-04	ci right 6.407350e-04	k: 407	n:700000
FAM75C1   700000 perm   361 sec   (1941 perm/sec)   p_kst 5.814286e-04   p_cons 9.831600e-01   p_joint 7.820000e-03

Joint ci ratio: 5.202656e-02	ci left: 7.725965e-03	ci right 8.140036e-03	k: 5631	n:710000
Cons ci ratio: 6.093371e-04	ci left: 9.828330e-01	ci right 9.834335e-01	k: 698026	n:710000
KS ci ratio: 1.921374e-01	ci left: 5.296310e-04	ci right 6.435220e-04	k: 415	n:710000
FAM75C1   710000 perm   369 sec   (1925 perm/sec)   p_kst 5.845070e-04   p_cons 9.831352e-01   p_joint 7.930986e-03

Joint ci ratio: 5.102104e-02	ci left: 7.924413e-03	ci right 8.340670e-03	k: 5854	n:720000
Cons ci ratio: 6.051501e-04	ci left: 9.828318e-01	ci right 9.834281e-01	k: 707855	n:720000
KS ci ratio: 1.898683e-01	ci left: 5.354999e-04	ci right 6.491363e-04	k: 425	n:720000
FAM75C1   720000 perm   377 sec   (1909 perm/sec)   p_kst 5.902778e-04   p_cons 9.831319e-01   p_joint 8.130556e-03

Joint ci ratio: 5.162732e-02	ci left: 7.633272e-03	ci right 8.039142e-03	k: 5719	n:730000
Cons ci ratio: 6.013211e-04	ci left: 9.828155e-01	ci right 9.834080e-01	k: 717673	n:730000
KS ci ratio: 1.883272e-01	ci left: 5.372995e-04	ci right 6.502864e-04	k: 432	n:730000
FAM75C1   730000 perm   386 sec   (1893 perm/sec)   p_kst 5.917808e-04   p_cons 9.831137e-01   p_joint 7.834247e-03

Joint ci ratio: 5.122993e-02	ci left: 7.648845e-03	ci right 8.052320e-03	k: 5808	n:740000
Cons ci ratio: 5.974661e-04	ci left: 9.828051e-01	ci right 9.833938e-01	k: 727495	n:740000
KS ci ratio: 1.868230e-01	ci left: 5.390540e-04	ci right 6.514018e-04	k: 439	n:740000
FAM75C1   740000 perm   394 sec   (1879 perm/sec)   p_kst 5.932432e-04   p_cons 9.831014e-01   p_joint 7.848649e-03

Joint ci ratio: 5.028597e-02	ci left: 7.835173e-03	ci right 8.240641e-03	k: 6027	n:750000
Cons ci ratio: 5.931600e-04	ci left: 9.828246e-01	ci right 9.834090e-01	k: 737339	n:750000
KS ci ratio: 1.866117e-01	ci left: 5.331374e-04	ci right 6.441122e-04	k: 440	n:750000
FAM75C1   750000 perm   403 sec   (1862 perm/sec)   p_kst 5.866667e-04   p_cons 9.831187e-01   p_joint 8.036000e-03

Joint ci ratio: 5.058983e-02	ci left: 7.639816e-03	ci right 8.037633e-03	k: 5956	n:760000
Cons ci ratio: 5.886412e-04	ci left: 9.828608e-01	ci right 9.834408e-01	k: 747196	n:760000
KS ci ratio: 1.864010e-01	ci left: 5.273767e-04	ci right 6.370144e-04	k: 441	n:760000
FAM75C1   760000 perm   411 sec   (1849 perm/sec)   p_kst 5.802632e-04   p_cons 9.831526e-01   p_joint 7.836842e-03

Joint ci ratio: 5.102584e-02	ci left: 7.412356e-03	ci right 7.801752e-03	k: 5856	n:770000
Cons ci ratio: 5.845430e-04	ci left: 9.828777e-01	ci right 9.834537e-01	k: 757039	n:770000
KS ci ratio: 1.851486e-01	ci left: 5.279575e-04	ci right 6.368957e-04	k: 447	n:770000
FAM75C1   770000 perm   420 sec   (1834 perm/sec)   p_kst 5.805195e-04   p_cons 9.831675e-01   p_joint 7.605195e-03

Joint ci ratio: 5.077132e-02	ci left: 7.392002e-03	ci right 7.778335e-03	k: 5915	n:780000
Cons ci ratio: 5.811136e-04	ci left: 9.828606e-01	ci right 9.834332e-01	k: 766856	n:780000
KS ci ratio: 1.843277e-01	ci left: 5.260798e-04	ci right 6.340955e-04	k: 451	n:780000
FAM75C1   780000 perm   428 sec   (1821 perm/sec)   p_kst 5.782051e-04   p_cons 9.831487e-01   p_joint 7.583333e-03

Joint ci ratio: 5.042711e-02	ci left: 7.399667e-03	ci right 7.783703e-03	k: 5996	n:790000
Cons ci ratio: 5.771035e-04	ci left: 9.828810e-01	ci right 9.834496e-01	k: 776702	n:790000
KS ci ratio: 1.833167e-01	ci left: 5.254584e-04	ci right 6.326890e-04	k: 456	n:790000
FAM75C1   790000 perm   437 sec   (1808 perm/sec)   p_kst 5.772152e-04   p_cons 9.831671e-01   p_joint 7.589873e-03

Joint ci ratio: 5.008981e-02	ci left: 7.407150e-03	ci right 7.788929e-03	k: 6077	n:800000
Cons ci ratio: 5.741489e-04	ci left: 9.828442e-01	ci right 9.834098e-01	k: 786503	n:800000
KS ci ratio: 1.827183e-01	ci left: 5.224683e-04	ci right 6.287021e-04	k: 459	n:800000
FAM75C1   800000 perm   446 sec   (1794 perm/sec)   p_kst 5.737500e-04   p_cons 9.831287e-01   p_joint 7.596250e-03

Joint ci ratio: 4.975105e-02	ci left: 7.416895e-03	ci right 7.796516e-03	k: 6160	n:810000
Cons ci ratio: 5.708119e-04	ci left: 9.828331e-01	ci right 9.833955e-01	k: 796324	n:810000
KS ci ratio: 1.815381e-01	ci left: 5.230878e-04	ci right 6.286851e-04	k: 465	n:810000
FAM75C1   810000 perm   455 sec   (1781 perm/sec)   p_kst 5.740741e-04   p_cons 9.831160e-01   p_joint 7.604938e-03

Joint ci ratio: 4.940312e-02	ci left: 7.431228e-03	ci right 7.808848e-03	k: 6247	n:820000
Cons ci ratio: 5.669694e-04	ci left: 9.828556e-01	ci right 9.834142e-01	k: 806172	n:820000
KS ci ratio: 1.799994e-01	ci left: 5.260234e-04	ci right 6.312152e-04	k: 473	n:820000
FAM75C1   820000 perm   463 sec   (1769 perm/sec)   p_kst 5.768293e-04   p_cons 9.831366e-01   p_joint 7.618293e-03

Joint ci ratio: 4.910146e-02	ci left: 7.433324e-03	ci right 7.808679e-03	k: 6324	n:830000
Cons ci ratio: 5.633665e-04	ci left: 9.828678e-01	ci right 9.834228e-01	k: 816012	n:830000
KS ci ratio: 1.786847e-01	ci left: 5.277410e-04	ci right 6.324221e-04	k: 480	n:830000
FAM75C1   830000 perm   473 sec   (1755 perm/sec)   p_kst 5.783133e-04   p_cons 9.831470e-01   p_joint 7.619277e-03

Joint ci ratio: 4.885142e-02	ci left: 7.421264e-03	ci right 7.794048e-03	k: 6389	n:840000
Cons ci ratio: 5.599117e-04	ci left: 9.828749e-01	ci right 9.834265e-01	k: 825848	n:840000
KS ci ratio: 1.775806e-01	ci left: 5.282827e-04	ci right 6.323542e-04	k: 486	n:840000
FAM75C1   840000 perm   482 sec   (1741 perm/sec)   p_kst 5.785714e-04   p_cons 9.831524e-01   p_joint 7.605952e-03

Joint ci ratio: 4.852946e-02	ci left: 7.432739e-03	ci right 7.803569e-03	k: 6474	n:850000
Cons ci ratio: 5.566383e-04	ci left: 9.828747e-01	ci right 9.834231e-01	k: 835678	n:850000
KS ci ratio: 1.761395e-01	ci left: 5.310628e-04	ci right 6.347427e-04	k: 494	n:850000
FAM75C1   850000 perm   492 sec   (1729 perm/sec)   p_kst 5.811765e-04   p_cons 9.831506e-01   p_joint 7.616471e-03

Joint ci ratio: 4.750735e-02	ci left: 7.668006e-03	ci right 8.042297e-03	k: 6754	n:860000
Cons ci ratio: 5.530914e-04	ci left: 9.828945e-01	ci right 9.834394e-01	k: 845525	n:860000
KS ci ratio: 1.749070e-01	ci left: 5.326697e-04	ci right 6.358587e-04	k: 501	n:860000
FAM75C1   860000 perm   501 sec   (1716 perm/sec)   p_kst 5.825581e-04   p_cons 9.831686e-01   p_joint 7.853488e-03

Joint ci ratio: 5.029726e-02	ci left: 6.758906e-03	ci right 7.108757e-03	k: 6031	n:870000
Cons ci ratio: 6.041203e-04	ci left: 9.794582e-01	ci right 9.800512e-01	k: 852388	n:870000
KS ci ratio: 1.745600e-01	ci left: 5.287453e-04	ci right 6.309494e-04	k: 503	n:870000
FAM75C1   870000 perm   510 sec   (1704 perm/sec)   p_kst 5.781609e-04   p_cons 9.797563e-01   p_joint 6.932184e-03

Joint ci ratio: 4.999967e-02	ci left: 6.762893e-03	ci right 7.110819e-03	k: 6103	n:880000
Cons ci ratio: 6.001883e-04	ci left: 9.794925e-01	ci right 9.800816e-01	k: 862214	n:880000
KS ci ratio: 1.731907e-01	ci left: 5.314321e-04	ci right 6.332656e-04	k: 511	n:880000
FAM75C1   880000 perm   520 sec   (1692 perm/sec)   p_kst 5.806818e-04   p_cons 9.797886e-01   p_joint 6.935227e-03

Joint ci ratio: 4.972756e-02	ci left: 6.761247e-03	ci right 7.107142e-03	k: 6170	n:890000
Cons ci ratio: 5.971095e-04	ci left: 9.794739e-01	ci right 9.800600e-01	k: 871994	n:890000
KS ci ratio: 1.718530e-01	ci left: 5.340617e-04	ci right 6.355266e-04	k: 519	n:890000
FAM75C1   890000 perm   530 sec   (1680 perm/sec)   p_kst 5.831461e-04   p_cons 9.797685e-01   p_joint 6.932584e-03

Joint ci ratio: 4.943592e-02	ci left: 6.766228e-03	ci right 7.110290e-03	k: 6243	n:900000
Cons ci ratio: 5.938275e-04	ci left: 9.794726e-01	ci right 9.800555e-01	k: 881789	n:900000
KS ci ratio: 1.713597e-01	ci left: 5.313178e-04	ci right 6.319417e-04	k: 522	n:900000
FAM75C1   900000 perm   539 sec   (1668 perm/sec)   p_kst 5.800000e-04   p_cons 9.797656e-01   p_joint 6.936667e-03

Joint ci ratio: 4.914935e-02	ci left: 6.771106e-03	ci right 7.113363e-03	k: 6316	n:910000
Cons ci ratio: 5.907790e-04	ci left: 9.794591e-01	ci right 9.800390e-01	k: 891573	n:910000
KS ci ratio: 1.702242e-01	ci left: 5.328427e-04	ci right 6.330180e-04	k: 529	n:910000
FAM75C1   910000 perm   549 sec   (1658 perm/sec)   p_kst 5.813187e-04   p_cons 9.797505e-01   p_joint 6.940659e-03

Joint ci ratio: 4.884846e-02	ci left: 6.781251e-03	ci right 7.121864e-03	k: 6394	n:920000
Cons ci ratio: 5.873743e-04	ci left: 9.794733e-01	ci right 9.800498e-01	k: 901382	n:920000
KS ci ratio: 1.695857e-01	ci left: 5.312138e-04	ci right 6.306700e-04	k: 533	n:920000
FAM75C1   920000 perm   559 sec   (1647 perm/sec)   p_kst 5.793478e-04   p_cons 9.797630e-01   p_joint 6.950000e-03

Joint ci ratio: 5.548911e-02	ci left: 5.189491e-03	ci right 5.486721e-03	k: 4963	n:930000
Cons ci ratio: 5.842969e-04	ci left: 9.794687e-01	ci right 9.800423e-01	k: 911174	n:930000
KS ci ratio: 1.687973e-01	ci left: 5.306505e-04	ci right 6.294924e-04	k: 538	n:930000
FAM75C1   930000 perm   568 sec   (1636 perm/sec)   p_kst 5.784946e-04   p_cons 9.797570e-01   p_joint 5.336559e-03

Joint ci ratio: 5.519525e-02	ci left: 5.189886e-03	ci right 5.485515e-03	k: 5016	n:940000
Cons ci ratio: 5.810802e-04	ci left: 9.794772e-01	ci right 9.800475e-01	k: 920978	n:940000
KS ci ratio: 1.678656e-01	ci left: 5.311194e-04	ci right 6.294473e-04	k: 544	n:940000
FAM75C1   940000 perm   578 sec   (1625 perm/sec)   p_kst 5.787234e-04   p_cons 9.797638e-01   p_joint 5.336170e-03

Joint ci ratio: 9.329960e-02	ci left: 1.768183e-03	ci right 1.942245e-03	k: 1761	n:950000
Cons ci ratio: 5.781615e-04	ci left: 9.794685e-01	ci right 9.800360e-01	k: 930766	n:950000
KS ci ratio: 1.671009e-01	ci left: 5.305712e-04	ci right 6.283051e-04	k: 549	n:950000
FAM75C1   950000 perm   588 sec   (1615 perm/sec)   p_kst 5.778947e-04   p_cons 9.797537e-01   p_joint 1.853684e-03

Joint ci ratio: 5.463199e-02	ci left: 5.188610e-03	ci right 5.481054e-03	k: 5120	n:960000
Cons ci ratio: 5.748634e-04	ci left: 9.794893e-01	ci right 9.800536e-01	k: 940582	n:960000
KS ci ratio: 1.658985e-01	ci left: 5.330305e-04	ci right 6.304405e-04	k: 557	n:960000
FAM75C1   960000 perm   598 sec   (1605 perm/sec)   p_kst 5.802083e-04   p_cons 9.797729e-01   p_joint 5.333333e-03

Joint ci ratio: 4.757835e-02	ci left: 6.784104e-03	ci right 7.115757e-03	k: 6740	n:970000
Cons ci ratio: 5.717098e-04	ci left: 9.795035e-01	ci right 9.800647e-01	k: 950392	n:970000
KS ci ratio: 1.651603e-01	ci left: 5.324765e-04	ci right 6.293091e-04	k: 562	n:970000
FAM75C1   970000 perm   608 sec   (1596 perm/sec)   p_kst 5.793814e-04   p_cons 9.797856e-01   p_joint 6.948454e-03

Joint ci ratio: 4.736473e-02	ci left: 6.776384e-03	ci right 7.106132e-03	k: 6801	n:980000
Cons ci ratio: 5.688271e-04	ci left: 9.795021e-01	ci right 9.800604e-01	k: 960187	n:980000
KS ci ratio: 1.639990e-01	ci left: 5.348701e-04	ci right 6.313867e-04	k: 570	n:980000
FAM75C1   980000 perm   618 sec   (1587 perm/sec)   p_kst 5.816327e-04   p_cons 9.797827e-01   p_joint 6.939796e-03

Joint ci ratio: 4.713668e-02	ci left: 6.773815e-03	ci right 7.101807e-03	k: 6867	n:990000
Cons ci ratio: 5.659588e-04	ci left: 9.795027e-01	ci right 9.800582e-01	k: 969984	n:990000
KS ci ratio: 1.630028e-01	ci left: 5.362488e-04	ci right 6.323688e-04	k: 577	n:990000
FAM75C1   990000 perm   628 sec   (1576 perm/sec)   p_kst 5.828283e-04   p_cons 9.797818e-01   p_joint 6.936364e-03

Joint ci ratio: 5.367699e-02	ci left: 5.162572e-03	ci right 5.448305e-03	k: 5304	n:1000000
Cons ci ratio: 5.629770e-04	ci left: 9.795143e-01	ci right 9.800669e-01	k: 979792	n:1000000
KS ci ratio: 1.627218e-01	ci left: 5.328047e-04	ci right 6.281266e-04	k: 579	n:1000000
FAM75C1   1000000 perm   639 sec   (1566 perm/sec)   p_kst 5.790000e-04   p_cons 9.797920e-01   p_joint 5.304000e-03

Joint ci ratio: 5.345098e-02	ci left: 5.155415e-03	ci right 5.439513e-03	k: 5349	n:1010000
Cons ci ratio: 5.602238e-04	ci left: 9.795128e-01	ci right 9.800627e-01	k: 989587	n:1010000
KS ci ratio: 1.620250e-01	ci left: 5.322788e-04	ci right 6.270591e-04	k: 584	n:1010000
FAM75C1   1010000 perm   649 sec   (1557 perm/sec)   p_kst 5.782178e-04   p_cons 9.797891e-01   p_joint 5.296040e-03

Joint ci ratio: 5.309933e-02	ci left: 5.173553e-03	ci right 5.456718e-03	k: 5420	n:1020000
Cons ci ratio: 5.575106e-04	ci left: 9.795113e-01	ci right 9.800585e-01	k: 999382	n:1020000
KS ci ratio: 1.607926e-01	ci left: 5.355276e-04	ci right 6.300910e-04	k: 593	n:1020000
FAM75C1   1020000 perm   659 sec   (1547 perm/sec)   p_kst 5.813725e-04   p_cons 9.797863e-01   p_joint 5.313725e-03

Joint ci ratio: 4.622699e-02	ci left: 6.772709e-03	ci right 7.094151e-03	k: 7140	n:1030000
Cons ci ratio: 5.546597e-04	ci left: 9.795226e-01	ci right 9.800670e-01	k: 1009190	n:1030000
KS ci ratio: 1.597205e-01	ci left: 5.377838e-04	ci right 6.320517e-04	k: 601	n:1030000
FAM75C1   1030000 perm   670 sec   (1537 perm/sec)   p_kst 5.834951e-04   p_cons 9.797961e-01   p_joint 6.932039e-03

Joint ci ratio: 4.604709e-02	ci left: 6.760811e-03	ci right 7.080406e-03	k: 7196	n:1040000
Cons ci ratio: 5.520128e-04	ci left: 9.795220e-01	ci right 9.800638e-01	k: 1018986	n:1040000
KS ci ratio: 1.593242e-01	ci left: 5.353822e-04	ci right 6.289741e-04	k: 604	n:1040000
FAM75C1   1040000 perm   681 sec   (1528 perm/sec)   p_kst 5.807692e-04   p_cons 9.797942e-01   p_joint 6.919231e-03

Joint ci ratio: 4.506599e-02	ci left: 6.993024e-03	ci right 7.316371e-03	k: 7511	n:1050000
Cons ci ratio: 5.492581e-04	ci left: 9.795320e-01	ci right 9.800711e-01	k: 1028793	n:1050000
KS ci ratio: 1.588003e-01	ci left: 5.339412e-04	ci right 6.269449e-04	k: 608	n:1050000
FAM75C1   1050000 perm   691 sec   (1519 perm/sec)   p_kst 5.790476e-04   p_cons 9.798029e-01   p_joint 7.153333e-03

Joint ci ratio: 4.560249e-02	ci left: 6.764744e-03	ci right 7.081356e-03	k: 7337	n:1060000
Cons ci ratio: 5.465441e-04	ci left: 9.795418e-01	ci right 9.800782e-01	k: 1038600	n:1060000
KS ci ratio: 1.580237e-01	ci left: 5.343400e-04	ci right 6.269149e-04	k: 614	n:1060000
FAM75C1   1060000 perm   702 sec   (1510 perm/sec)   p_kst 5.792453e-04   p_cons 9.798113e-01   p_joint 6.921698e-03

Joint ci ratio: 5.189311e-02	ci left: 5.166988e-03	ci right 5.443177e-03	k: 5675	n:1070000
Cons ci ratio: 5.439726e-04	ci left: 9.795439e-01	ci right 9.800778e-01	k: 1048399	n:1070000
KS ci ratio: 1.570057e-01	ci left: 5.365282e-04	ci right 6.288269e-04	k: 622	n:1070000
FAM75C1   1070000 perm   713 sec   (1500 perm/sec)   p_kst 5.813084e-04   p_cons 9.798121e-01   p_joint 5.303738e-03

Joint ci ratio: 5.168881e-02	ci left: 5.160272e-03	ci right 5.434984e-03	k: 5720	n:1080000
Cons ci ratio: 5.413738e-04	ci left: 9.795506e-01	ci right 9.800820e-01	k: 1058203	n:1080000
KS ci ratio: 1.565042e-01	ci left: 5.351187e-04	ci right 6.268534e-04	k: 626	n:1080000
FAM75C1   1080000 perm   724 sec   (1492 perm/sec)   p_kst 5.796296e-04   p_cons 9.798176e-01   p_joint 5.296296e-03

Joint ci ratio: 5.139291e-02	ci left: 5.172701e-03	ci right 5.446451e-03	k: 5786	n:1090000
Cons ci ratio: 5.388993e-04	ci left: 9.795508e-01	ci right 9.800797e-01	k: 1068000	n:1090000
KS ci ratio: 1.558839e-01	ci left: 5.346172e-04	ci right 6.258687e-04	k: 631	n:1090000
FAM75C1   1090000 perm   735 sec   (1483 perm/sec)   p_kst 5.788991e-04   p_cons 9.798165e-01   p_joint 5.308257e-03

Joint ci ratio: 5.114157e-02	ci left: 5.176831e-03	ci right 5.449420e-03	k: 5843	n:1100000
Cons ci ratio: 5.362858e-04	ci left: 9.795637e-01	ci right 9.800901e-01	k: 1077811	n:1100000
KS ci ratio: 1.547855e-01	ci left: 5.376209e-04	ci right 6.286785e-04	k: 640	n:1100000
FAM75C1   1100000 perm   746 sec   (1475 perm/sec)   p_kst 5.818182e-04   p_cons 9.798282e-01   p_joint 5.311818e-03

Joint ci ratio: 5.098517e-02	ci left: 5.162210e-03	ci right 5.433174e-03	k: 5879	n:1110000
Cons ci ratio: 5.340261e-04	ci left: 9.795529e-01	ci right 9.800770e-01	k: 1087596	n:1110000
KS ci ratio: 1.543049e-01	ci left: 5.362417e-04	ci right 6.267576e-04	k: 644	n:1110000
FAM75C1   1110000 perm   757 sec   (1466 perm/sec)   p_kst 5.801802e-04   p_cons 9.798162e-01   p_joint 5.296396e-03

Joint ci ratio: 5.067114e-02	ci left: 5.180470e-03	ci right 5.450669e-03	k: 5952	n:1120000
Cons ci ratio: 5.315785e-04	ci left: 9.795584e-01	ci right 9.800802e-01	k: 1097399	n:1120000
KS ci ratio: 1.534743e-01	ci left: 5.374632e-04	ci right 6.276520e-04	k: 651	n:1120000
FAM75C1   1120000 perm   768 sec   (1458 perm/sec)   p_kst 5.812500e-04   p_cons 9.798205e-01   p_joint 5.314286e-03

Joint ci ratio: 5.045552e-02	ci left: 5.179188e-03	ci right 5.448136e-03	k: 6003	n:1130000
Cons ci ratio: 5.292117e-04	ci left: 9.795603e-01	ci right 9.800797e-01	k: 1107198	n:1130000
KS ci ratio: 1.531226e-01	ci left: 5.352599e-04	ci right 6.248543e-04	k: 654	n:1130000
FAM75C1   1130000 perm   780 sec   (1449 perm/sec)   p_kst 5.787611e-04   p_cons 9.798212e-01   p_joint 5.312389e-03

Joint ci ratio: 5.022596e-02	ci left: 5.181395e-03	ci right 5.449198e-03	k: 6058	n:1140000
Cons ci ratio: 5.270515e-04	ci left: 9.795489e-01	ci right 9.800662e-01	k: 1116982	n:1140000
KS ci ratio: 1.527733e-01	ci left: 5.330954e-04	ci right 6.221054e-04	k: 657	n:1140000
FAM75C1   1140000 perm   791 sec   (1441 perm/sec)   p_kst 5.763158e-04   p_cons 9.798088e-01   p_joint 5.314035e-03

Joint ci ratio: 4.995844e-02	ci left: 5.192154e-03	ci right 5.459043e-03	k: 6123	n:1150000
Cons ci ratio: 5.249980e-04	ci left: 9.795316e-01	ci right 9.800468e-01	k: 1126759	n:1150000
KS ci ratio: 1.520815e-01	ci left: 5.334782e-04	ci right 6.221120e-04	k: 663	n:1150000
FAM75C1   1150000 perm   802 sec   (1433 perm/sec)   p_kst 5.765217e-04   p_cons 9.797904e-01   p_joint 5.324348e-03

Joint ci ratio: 5.003356e-02	ci left: 5.132066e-03	ci right 5.396275e-03	k: 6105	n:1160000
Cons ci ratio: 5.226834e-04	ci left: 9.795363e-01	ci right 9.800492e-01	k: 1136561	n:1160000
KS ci ratio: 1.510610e-01	ci left: 5.363437e-04	ci right 6.248015e-04	k: 672	n:1160000
FAM75C1   1160000 perm   814 sec   (1426 perm/sec)   p_kst 5.793103e-04   p_cons 9.797940e-01   p_joint 5.262931e-03

Joint ci ratio: 4.980562e-02	ci left: 5.135469e-03	ci right 5.398614e-03	k: 6161	n:1170000
Cons ci ratio: 5.203880e-04	ci left: 9.795417e-01	ci right 9.800525e-01	k: 1146364	n:1170000
KS ci ratio: 1.502814e-01	ci left: 5.375170e-04	ci right 6.256696e-04	k: 679	n:1170000
FAM75C1   1170000 perm   825 sec   (1418 perm/sec)   p_kst 5.803419e-04   p_cons 9.797983e-01   p_joint 5.265812e-03

Joint ci ratio: 4.955674e-02	ci left: 5.143838e-03	ci right 5.406057e-03	k: 6223	n:1180000
Cons ci ratio: 5.181337e-04	ci left: 9.795463e-01	ci right 9.800548e-01	k: 1156166	n:1180000
KS ci ratio: 1.496227e-01	ci left: 5.378557e-04	ci right 6.256427e-04	k: 685	n:1180000
FAM75C1   1180000 perm   837 sec   (1410 perm/sec)   p_kst 5.805085e-04   p_cons 9.798017e-01   p_joint 5.273729e-03

Joint ci ratio: 4.902230e-02	ci left: 5.213494e-03	ci right 5.476317e-03	k: 6359	n:1190000
Cons ci ratio: 5.161274e-04	ci left: 9.795338e-01	ci right 9.800403e-01	k: 1165948	n:1190000
KS ci ratio: 1.483306e-01	ci left: 5.430442e-04	ci right 6.308447e-04	k: 697	n:1190000
FAM75C1   1190000 perm   849 sec   (1402 perm/sec)   p_kst 5.857143e-04   p_cons 9.797882e-01   p_joint 5.343697e-03

Joint ci ratio: 4.881549e-02	ci left: 5.214498e-03	ci right 5.476232e-03	k: 6413	n:1200000
Cons ci ratio: 5.141548e-04	ci left: 9.795207e-01	ci right 9.800253e-01	k: 1175729	n:1200000
KS ci ratio: 1.476972e-01	ci left: 5.433336e-04	ci right 6.307727e-04	k: 703	n:1200000
FAM75C1   1200000 perm   860 sec   (1395 perm/sec)   p_kst 5.858333e-04   p_cons 9.797742e-01   p_joint 5.344167e-03

Joint ci ratio: 4.860750e-02	ci left: 5.216304e-03	ci right 5.476981e-03	k: 6468	n:1210000
Cons ci ratio: 5.123645e-04	ci left: 9.794954e-01	ci right 9.799982e-01	k: 1185495	n:1210000
KS ci ratio: 1.470717e-01	ci left: 5.436191e-04	ci right 6.307011e-04	k: 709	n:1210000
FAM75C1   1210000 perm   872 sec   (1388 perm/sec)   p_kst 5.859504e-04   p_cons 9.797479e-01   p_joint 5.345455e-03

Joint ci ratio: 4.840587e-02	ci left: 5.217273e-03	ci right 5.476887e-03	k: 6522	n:1220000
Cons ci ratio: 5.101704e-04	ci left: 9.795035e-01	ci right 9.800041e-01	k: 1195301	n:1220000
KS ci ratio: 1.463520e-01	ci left: 5.446903e-04	ci right 6.314796e-04	k: 716	n:1220000
FAM75C1   1220000 perm   883 sec   (1381 perm/sec)   p_kst 5.868852e-04   p_cons 9.797549e-01   p_joint 5.345902e-03

Joint ci ratio: 4.823255e-02	ci left: 5.212606e-03	ci right 5.471033e-03	k: 6569	n:1230000
Cons ci ratio: 5.083062e-04	ci left: 9.794877e-01	ci right 9.799865e-01	k: 1205078	n:1230000
KS ci ratio: 1.456427e-01	ci left: 5.457451e-04	ci right 6.322444e-04	k: 723	n:1230000
FAM75C1   1230000 perm   895 sec   (1374 perm/sec)   p_kst 5.878049e-04   p_cons 9.797382e-01   p_joint 5.340650e-03

Joint ci ratio: 4.186699e-02	ci left: 6.873158e-03	ci right 7.167861e-03	k: 8704	n:1240000
Cons ci ratio: 5.063077e-04	ci left: 9.794843e-01	ci right 9.799812e-01	k: 1214870	n:1240000
KS ci ratio: 1.449436e-01	ci left: 5.467839e-04	ci right 6.329959e-04	k: 730	n:1240000
FAM75C1   1240000 perm   907 sec   (1367 perm/sec)   p_kst 5.887097e-04   p_cons 9.797339e-01   p_joint 7.019355e-03

Joint ci ratio: 4.171403e-02	ci left: 6.868838e-03	ci right 7.162253e-03	k: 8768	n:1250000
Cons ci ratio: 5.042208e-04	ci left: 9.794899e-01	ci right 9.799847e-01	k: 1224673	n:1250000
KS ci ratio: 1.446473e-01	ci left: 5.447227e-04	ci right 6.304188e-04	k: 733	n:1250000
FAM75C1   1250000 perm   920 sec   (1359 perm/sec)   p_kst 5.864000e-04   p_cons 9.797384e-01   p_joint 7.014400e-03

Joint ci ratio: 4.155090e-02	ci left: 6.868515e-03	ci right 7.160742e-03	k: 8837	n:1260000
Cons ci ratio: 5.022900e-04	ci left: 9.794850e-01	ci right 9.799779e-01	k: 1234463	n:1260000
KS ci ratio: 1.443528e-01	ci left: 5.426943e-04	ci right 6.278825e-04	k: 736	n:1260000
FAM75C1   1260000 perm   932 sec   (1352 perm/sec)   p_kst 5.841270e-04   p_cons 9.797325e-01   p_joint 7.013492e-03

Joint ci ratio: 4.755388e-02	ci left: 5.195465e-03	ci right 5.449319e-03	k: 6758	n:1270000
Cons ci ratio: 5.001133e-04	ci left: 9.795016e-01	ci right 9.799923e-01	k: 1244280	n:1270000
KS ci ratio: 1.439627e-01	ci left: 5.414571e-04	ci right 6.262018e-04	k: 740	n:1270000
FAM75C1   1270000 perm   944 sec   (1345 perm/sec)   p_kst 5.826772e-04   p_cons 9.797480e-01   p_joint 5.321260e-03

Joint ci ratio: 4.121873e-02	ci left: 6.871758e-03	ci right 7.161730e-03	k: 8980	n:1280000
Cons ci ratio: 4.983958e-04	ci left: 9.794833e-01	ci right 9.799723e-01	k: 1254053	n:1280000
KS ci ratio: 1.428107e-01	ci left: 5.462657e-04	ci right 6.310205e-04	k: 752	n:1280000
FAM75C1   1280000 perm   957 sec   (1338 perm/sec)   p_kst 5.875000e-04   p_cons 9.797289e-01   p_joint 7.015625e-03

Joint ci ratio: 4.714047e-02	ci left: 5.206072e-03	ci right 5.458173e-03	k: 6877	n:1290000
Cons ci ratio: 4.964243e-04	ci left: 9.794871e-01	ci right 9.799743e-01	k: 1263854	n:1290000
KS ci ratio: 1.423389e-01	ci left: 5.457688e-04	ci right 6.301431e-04	k: 757	n:1290000
FAM75C1   1290000 perm   970 sec   (1330 perm/sec)   p_kst 5.868217e-04   p_cons 9.797318e-01   p_joint 5.331008e-03

Joint ci ratio: 4.692248e-02	ci left: 5.214677e-03	ci right 5.465996e-03	k: 6941	n:1300000
Cons ci ratio: 4.944472e-04	ci left: 9.794933e-01	ci right 9.799784e-01	k: 1273658	n:1300000
KS ci ratio: 1.415936e-01	ci left: 5.475059e-04	ci right 6.316680e-04	k: 765	n:1300000
FAM75C1   1300000 perm   983 sec   (1322 perm/sec)   p_kst 5.884615e-04   p_cons 9.797369e-01   p_joint 5.339231e-03

Joint ci ratio: 4.675783e-02	ci left: 5.211837e-03	ci right 5.462113e-03	k: 6990	n:1310000
Cons ci ratio: 4.924556e-04	ci left: 9.795024e-01	ci right 9.799856e-01	k: 1283466	n:1310000
KS ci ratio: 1.407688e-01	ci left: 5.499541e-04	ci right 6.339588e-04	k: 774	n:1310000
FAM75C1   1310000 perm   996 sec   (1316 perm/sec)   p_kst 5.908397e-04   p_cons 9.797450e-01   p_joint 5.335878e-03

Joint ci ratio: 4.658824e-02	ci left: 5.210539e-03	ci right 5.459821e-03	k: 7041	n:1320000
Cons ci ratio: 4.906283e-04	ci left: 9.794999e-01	ci right 9.799813e-01	k: 1293259	n:1320000
KS ci ratio: 1.404071e-01	ci left: 5.487114e-04	ci right 6.322930e-04	k: 778	n:1320000
FAM75C1   1320000 perm   1008 sec   (1309 perm/sec)   p_kst 5.893939e-04   p_cons 9.797417e-01   p_joint 5.334091e-03

Joint ci ratio: 4.539587e-02	ci left: 5.448603e-03	ci right 5.702429e-03	k: 7414	n:1330000
Cons ci ratio: 4.889693e-04	ci left: 9.794854e-01	ci right 9.799652e-01	k: 1303036	n:1330000
KS ci ratio: 1.396028e-01	ci left: 5.511157e-04	ci right 6.345426e-04	k: 787	n:1330000
FAM75C1   1330000 perm   1021 sec   (1303 perm/sec)   p_kst 5.917293e-04   p_cons 9.797263e-01   p_joint 5.574436e-03

Joint ci ratio: 4.625129e-02	ci left: 5.208743e-03	ci right 5.456089e-03	k: 7144	n:1340000
Cons ci ratio: 4.871986e-04	ci left: 9.794816e-01	ci right 9.799596e-01	k: 1312827	n:1340000
KS ci ratio: 1.393380e-01	ci left: 5.491636e-04	ci right 6.321241e-04	k: 790	n:1340000
FAM75C1   1340000 perm   1034 sec   (1295 perm/sec)   p_kst 5.895522e-04   p_cons 9.797216e-01   p_joint 5.331343e-03

Joint ci ratio: 4.509301e-02	ci left: 5.441119e-03	ci right 5.692861e-03	k: 7514	n:1350000
Cons ci ratio: 4.852298e-04	ci left: 9.794957e-01	ci right 9.799718e-01	k: 1322642	n:1350000
KS ci ratio: 1.390746e-01	ci left: 5.472405e-04	ci right 6.297414e-04	k: 793	n:1350000
FAM75C1   1350000 perm   1048 sec   (1288 perm/sec)   p_kst 5.874074e-04   p_cons 9.797348e-01   p_joint 5.565926e-03

Joint ci ratio: 4.492891e-02	ci left: 5.441097e-03	ci right 5.691898e-03	k: 7569	n:1360000
Cons ci ratio: 4.834009e-04	ci left: 9.795000e-01	ci right 9.799744e-01	k: 1332444	n:1360000
KS ci ratio: 1.384655e-01	ci left: 5.481850e-04	ci right 6.304365e-04	k: 800	n:1360000
FAM75C1   1360000 perm   1061 sec   (1282 perm/sec)   p_kst 5.882353e-04   p_cons 9.797382e-01   p_joint 5.565441e-03

Joint ci ratio: 4.473121e-02	ci left: 5.449738e-03	ci right 5.699804e-03	k: 7636	n:1370000
Cons ci ratio: 4.817784e-04	ci left: 9.794889e-01	ci right 9.799616e-01	k: 1342225	n:1370000
KS ci ratio: 1.382071e-01	ci left: 5.462976e-04	ci right 6.281004e-04	k: 803	n:1370000
FAM75C1   1370000 perm   1074 sec   (1275 perm/sec)   p_kst 5.861314e-04   p_cons 9.797263e-01   p_joint 5.573723e-03

Joint ci ratio: 3.899882e-02	ci left: 7.126349e-03	ci right 7.410507e-03	k: 10029	n:1380000
Cons ci ratio: 4.801895e-04	ci left: 9.794765e-01	ci right 9.799476e-01	k: 1352004	n:1380000
KS ci ratio: 1.373554e-01	ci left: 5.493356e-04	ci right 6.310449e-04	k: 813	n:1380000
FAM75C1   1380000 perm   1087 sec   (1269 perm/sec)   p_kst 5.891304e-04   p_cons 9.797130e-01   p_joint 7.267391e-03

Joint ci ratio: 4.448477e-02	ci left: 5.431793e-03	ci right 5.679627e-03	k: 7721	n:1390000
Cons ci ratio: 4.786939e-04	ci left: 9.794577e-01	ci right 9.799274e-01	k: 1361774	n:1390000
KS ci ratio: 1.371871e-01	ci left: 5.467730e-04	ci right 6.279933e-04	k: 815	n:1390000
FAM75C1   1390000 perm   1101 sec   (1262 perm/sec)   p_kst 5.863309e-04   p_cons 9.796935e-01   p_joint 5.554676e-03

Joint ci ratio: 4.431860e-02	ci left: 5.433963e-03	ci right 5.680947e-03	k: 7779	n:1400000
Cons ci ratio: 4.767408e-04	ci left: 9.794787e-01	ci right 9.799465e-01	k: 1371599	n:1400000
KS ci ratio: 1.363540e-01	ci left: 5.497659e-04	ci right 6.308946e-04	k: 825	n:1400000
FAM75C1   1400000 perm   1114 sec   (1256 perm/sec)   p_kst 5.892857e-04   p_cons 9.797136e-01   p_joint 5.556429e-03

Joint ci ratio: 4.418547e-02	ci left: 5.428388e-03	ci right 5.674359e-03	k: 7826	n:1410000
Cons ci ratio: 4.748025e-04	ci left: 9.795001e-01	ci right 9.799660e-01	k: 1381425	n:1410000
KS ci ratio: 1.360251e-01	ci left: 5.486071e-04	ci right 6.293537e-04	k: 829	n:1410000
FAM75C1   1410000 perm   1128 sec   (1250 perm/sec)   p_kst 5.879433e-04   p_cons 9.797340e-01   p_joint 5.550355e-03

Joint ci ratio: 4.403948e-02	ci left: 5.426376e-03	ci right 5.671422e-03	k: 7878	n:1420000
Cons ci ratio: 4.732647e-04	ci left: 9.794894e-01	ci right 9.799537e-01	k: 1391206	n:1420000
KS ci ratio: 1.357801e-01	ci left: 5.467845e-04	ci right 6.271062e-04	k: 832	n:1420000
FAM75C1   1420000 perm   1141 sec   (1244 perm/sec)   p_kst 5.859155e-04   p_cons 9.797225e-01   p_joint 5.547887e-03

Joint ci ratio: 4.390049e-02	ci left: 5.423010e-03	ci right 5.667111e-03	k: 7928	n:1430000
Cons ci ratio: 4.715341e-04	ci left: 9.794964e-01	ci right 9.799590e-01	k: 1401012	n:1430000
KS ci ratio: 1.352937e-01	ci left: 5.470143e-04	ci right 6.270588e-04	k: 838	n:1430000
FAM75C1   1430000 perm   1155 sec   (1239 perm/sec)   p_kst 5.860140e-04   p_cons 9.797287e-01   p_joint 5.544056e-03

Joint ci ratio: 4.377384e-02	ci left: 5.416944e-03	ci right 5.660051e-03	k: 7974	n:1440000
Cons ci ratio: 4.700031e-04	ci left: 9.794879e-01	ci right 9.799491e-01	k: 1410796	n:1440000
KS ci ratio: 1.348125e-01	ci left: 5.472415e-04	ci right 6.270116e-04	k: 844	n:1440000
FAM75C1   1440000 perm   1169 sec   (1232 perm/sec)   p_kst 5.861111e-04   p_cons 9.797194e-01   p_joint 5.537500e-03

Joint ci ratio: 3.816230e-02	ci left: 7.086253e-03	ci right 7.362618e-03	k: 10474	n:1450000
Cons ci ratio: 4.683242e-04	ci left: 9.794934e-01	ci right 9.799529e-01	k: 1420600	n:1450000
KS ci ratio: 1.344946e-01	ci left: 5.461331e-04	ci right 6.255389e-04	k: 848	n:1450000
FAM75C1   1450000 perm   1183 sec   (1226 perm/sec)   p_kst 5.848276e-04   p_cons 9.797241e-01   p_joint 7.223448e-03

Joint ci ratio: 4.349940e-02	ci left: 5.411162e-03	ci right 5.652450e-03	k: 8075	n:1460000
Cons ci ratio: 4.667275e-04	ci left: 9.794934e-01	ci right 9.799513e-01	k: 1430396	n:1460000
KS ci ratio: 1.343367e-01	ci left: 5.437162e-04	ci right 6.226703e-04	k: 850	n:1460000
FAM75C1   1460000 perm   1196 sec   (1221 perm/sec)   p_kst 5.821918e-04   p_cons 9.797233e-01   p_joint 5.530822e-03

Joint ci ratio: 4.337081e-02	ci left: 5.406650e-03	ci right 5.647006e-03	k: 8123	n:1470000
Cons ci ratio: 4.651869e-04	ci left: 9.794899e-01	ci right 9.799463e-01	k: 1440187	n:1470000
KS ci ratio: 1.341006e-01	ci left: 5.419897e-04	ci right 6.205438e-04	k: 853	n:1470000
FAM75C1   1470000 perm   1210 sec   (1215 perm/sec)   p_kst 5.802721e-04   p_cons 9.797190e-01   p_joint 5.525850e-03

Joint ci ratio: 4.321147e-02	ci left: 5.410220e-03	ci right 5.649829e-03	k: 8183	n:1480000
Cons ci ratio: 4.633145e-04	ci left: 9.795164e-01	ci right 9.799710e-01	k: 1450022	n:1480000
KS ci ratio: 1.334768e-01	ci left: 5.435522e-04	ci right 6.219371e-04	k: 861	n:1480000
FAM75C1   1480000 perm   1223 sec   (1210 perm/sec)   p_kst 5.817568e-04   p_cons 9.797446e-01   p_joint 5.529054e-03

Joint ci ratio: 4.306700e-02	ci left: 5.410425e-03	ci right 5.649222e-03	k: 8238	n:1490000
Cons ci ratio: 4.617528e-04	ci left: 9.795175e-01	ci right 9.799706e-01	k: 1459820	n:1490000
KS ci ratio: 1.330914e-01	ci left: 5.431480e-04	ci right 6.212306e-04	k: 866	n:1490000
FAM75C1   1490000 perm   1237 sec   (1204 perm/sec)   p_kst 5.812081e-04   p_cons 9.797450e-01   p_joint 5.528859e-03

Joint ci ratio: 4.291357e-02	ci left: 5.413266e-03	ci right 5.651316e-03	k: 8297	n:1500000
Cons ci ratio: 4.600444e-04	ci left: 9.795327e-01	ci right 9.799841e-01	k: 1469639	n:1500000
KS ci ratio: 1.326332e-01	ci left: 5.433940e-04	ci right 6.212219e-04	k: 872	n:1500000
FAM75C1   1500000 perm   1253 sec   (1197 perm/sec)   p_kst 5.813333e-04   p_cons 9.797593e-01   p_joint 5.531333e-03

Joint ci ratio: 4.276948e-02	ci left: 5.414105e-03	ci right 5.651374e-03	k: 8353	n:1510000
Cons ci ratio: 4.585919e-04	ci left: 9.795271e-01	ci right 9.799770e-01	k: 1479427	n:1510000
KS ci ratio: 1.320296e-01	ci left: 5.449180e-04	ci right 6.225811e-04	k: 880	n:1510000
FAM75C1   1510000 perm   1272 sec   (1187 perm/sec)   p_kst 5.827815e-04   p_cons 9.797530e-01   p_joint 5.531788e-03

Joint ci ratio: 4.262429e-02	ci left: 5.415586e-03	ci right 5.652094e-03	k: 8410	n:1520000
Cons ci ratio: 4.571303e-04	ci left: 9.795235e-01	ci right 9.799720e-01	k: 1489218	n:1520000
KS ci ratio: 1.316565e-01	ci left: 5.445140e-04	ci right 6.218831e-04	k: 885	n:1520000
FAM75C1   1520000 perm   1290 sec   (1179 perm/sec)   p_kst 5.822368e-04   p_cons 9.797487e-01   p_joint 5.532895e-03

Joint ci ratio: 4.249066e-02	ci left: 5.414462e-03	ci right 5.650161e-03	k: 8463	n:1530000
Cons ci ratio: 4.555325e-04	ci left: 9.795331e-01	ci right 9.799801e-01	k: 1499029	n:1530000
KS ci ratio: 1.314343e-01	ci left: 5.428513e-04	ci right 6.198438e-04	k: 888	n:1530000
FAM75C1   1530000 perm   1304 sec   (1173 perm/sec)   p_kst 5.803922e-04   p_cons 9.797575e-01   p_joint 5.531373e-03

Joint ci ratio: 4.233080e-02	ci left: 5.420421e-03	ci right 5.655470e-03	k: 8527	n:1540000
Cons ci ratio: 4.539884e-04	ci left: 9.795394e-01	ci right 9.799848e-01	k: 1508835	n:1540000
KS ci ratio: 1.309930e-01	ci left: 5.430946e-04	ci right 6.198428e-04	k: 894	n:1540000
FAM75C1   1540000 perm   1318 sec   (1168 perm/sec)   p_kst 5.805195e-04   p_cons 9.797630e-01   p_joint 5.537013e-03

Joint ci ratio: 4.222465e-02	ci left: 5.412899e-03	ci right 5.647019e-03	k: 8570	n:1550000
Cons ci ratio: 4.525924e-04	ci left: 9.795338e-01	ci right 9.799779e-01	k: 1518623	n:1550000
KS ci ratio: 1.304114e-01	ci left: 5.445833e-04	ci right 6.211737e-04	k: 902	n:1550000
FAM75C1   1550000 perm   1333 sec   (1163 perm/sec)   p_kst 5.819355e-04   p_cons 9.797568e-01   p_joint 5.529032e-03

Joint ci ratio: 4.206777e-02	ci left: 5.418794e-03	ci right 5.652278e-03	k: 8634	n:1560000
Cons ci ratio: 4.510269e-04	ci left: 9.795445e-01	ci right 9.799870e-01	k: 1528436	n:1560000
KS ci ratio: 1.301954e-01	ci left: 5.429527e-04	ci right 6.191776e-04	k: 905	n:1560000
FAM75C1   1560000 perm   1348 sec   (1158 perm/sec)   p_kst 5.801282e-04   p_cons 9.797667e-01   p_joint 5.534615e-03

Joint ci ratio: 4.194414e-02	ci left: 5.416423e-03	ci right 5.649101e-03	k: 8685	n:1570000
Cons ci ratio: 4.496219e-04	ci left: 9.795422e-01	ci right 9.799834e-01	k: 1538229	n:1570000
KS ci ratio: 1.299090e-01	ci left: 5.419593e-04	ci right 6.178645e-04	k: 909	n:1570000
FAM75C1   1570000 perm   1363 sec   (1152 perm/sec)   p_kst 5.789809e-04   p_cons 9.797637e-01   p_joint 5.531847e-03

Joint ci ratio: 4.177355e-02	ci left: 5.426608e-03	ci right 5.658754e-03	k: 8756	n:1580000
Cons ci ratio: 4.482728e-04	ci left: 9.795362e-01	ci right 9.799760e-01	k: 1548016	n:1580000
KS ci ratio: 1.294829e-01	ci left: 5.422034e-04	ci right 6.178745e-04	k: 915	n:1580000
FAM75C1   1580000 perm   1378 sec   (1147 perm/sec)   p_kst 5.791139e-04   p_cons 9.797570e-01   p_joint 5.541772e-03

Joint ci ratio: 4.164299e-02	ci left: 5.426709e-03	ci right 5.658116e-03	k: 8811	n:1590000
Cons ci ratio: 4.468154e-04	ci left: 9.795409e-01	ci right 9.799793e-01	k: 1557820	n:1590000
KS ci ratio: 1.291309e-01	ci left: 5.418363e-04	ci right 6.172348e-04	k: 920	n:1590000
FAM75C1   1590000 perm   1392 sec   (1142 perm/sec)   p_kst 5.786164e-04   p_cons 9.797610e-01   p_joint 5.541509e-03

Joint ci ratio: 4.151835e-02	ci left: 5.425573e-03	ci right 5.656222e-03	k: 8864	n:1600000
Cons ci ratio: 4.454702e-04	ci left: 9.795368e-01	ci right 9.799739e-01	k: 1567610	n:1600000
KS ci ratio: 1.286429e-01	ci left: 5.426838e-04	ci right 6.178931e-04	k: 927	n:1600000
FAM75C1   1600000 perm   1407 sec   (1137 perm/sec)   p_kst 5.793750e-04   p_cons 9.797562e-01   p_joint 5.540000e-03

Joint ci ratio: 4.140650e-02	ci left: 5.421378e-03	ci right 5.651214e-03	k: 8912	n:1610000
Cons ci ratio: 4.441233e-04	ci left: 9.795341e-01	ci right 9.799698e-01	k: 1577402	n:1610000
KS ci ratio: 1.282978e-01	ci left: 5.423188e-04	ci right 6.172606e-04	k: 932	n:1610000
FAM75C1   1610000 perm   1423 sec   (1131 perm/sec)   p_kst 5.788820e-04   p_cons 9.797528e-01   p_joint 5.535404e-03

Joint ci ratio: 3.591348e-02	ci left: 7.169485e-03	ci right 7.432281e-03	k: 11826	n:1620000
Cons ci ratio: 4.428022e-04	ci left: 9.795301e-01	ci right 9.799645e-01	k: 1587192	n:1620000
KS ci ratio: 1.278192e-01	ci left: 5.431538e-04	ci right 6.179097e-04	k: 939	n:1620000
FAM75C1   1620000 perm   1439 sec   (1126 perm/sec)   p_kst 5.796296e-04   p_cons 9.797481e-01   p_joint 7.300000e-03

Joint ci ratio: 3.561819e-02	ci left: 7.244676e-03	ci right 7.507999e-03	k: 12022	n:1630000
Cons ci ratio: 4.415065e-04	ci left: 9.795249e-01	ci right 9.799581e-01	k: 1596980	n:1630000
KS ci ratio: 1.274132e-01	ci left: 5.433850e-04	ci right 6.179172e-04	k: 945	n:1630000
FAM75C1   1630000 perm   1453 sec   (1121 perm/sec)   p_kst 5.797546e-04   p_cons 9.797423e-01   p_joint 7.375460e-03

Joint ci ratio: 4.103531e-02	ci left: 5.419969e-03	ci right 5.647636e-03	k: 9074	n:1640000
Cons ci ratio: 4.401409e-04	ci left: 9.795271e-01	ci right 9.799590e-01	k: 1606780	n:1640000
KS ci ratio: 1.272117e-01	ci left: 5.418427e-04	ci right 6.160370e-04	k: 948	n:1640000
FAM75C1   1640000 perm   1468 sec   (1117 perm/sec)   p_kst 5.780488e-04   p_cons 9.797439e-01   p_joint 5.532927e-03

Joint ci ratio: 4.092505e-02	ci left: 5.416513e-03	ci right 5.643410e-03	k: 9123	n:1650000
Cons ci ratio: 4.387879e-04	ci left: 9.795294e-01	ci right 9.799599e-01	k: 1616580	n:1650000
KS ci ratio: 1.268115e-01	ci left: 5.420796e-04	ci right 6.160553e-04	k: 954	n:1650000
FAM75C1   1650000 perm   1483 sec   (1112 perm/sec)   p_kst 5.781818e-04   p_cons 9.797455e-01   p_joint 5.529091e-03

Joint ci ratio: 4.080226e-02	ci left: 5.416678e-03	ci right 5.642884e-03	k: 9178	n:1660000
Cons ci ratio: 4.374540e-04	ci left: 9.795310e-01	ci right 9.799601e-01	k: 1626379	n:1660000
KS ci ratio: 1.264808e-01	ci left: 5.417307e-04	ci right 6.154515e-04	k: 959	n:1660000
FAM75C1   1660000 perm   1501 sec   (1106 perm/sec)   p_kst 5.777108e-04   p_cons 9.797464e-01   p_joint 5.528916e-03

Joint ci ratio: 4.071383e-02	ci left: 5.407950e-03	ci right 5.633291e-03	k: 9218	n:1670000
Cons ci ratio: 4.358820e-04	ci left: 9.795554e-01	ci right 9.799831e-01	k: 1636216	n:1670000
KS ci ratio: 1.262182e-01	ci left: 5.408063e-04	ci right 6.142371e-04	k: 963	n:1670000
FAM75C1   1670000 perm   1521 sec   (1098 perm/sec)   p_kst 5.766467e-04   p_cons 9.797701e-01   p_joint 5.519760e-03

Joint ci ratio: 4.059073e-02	ci left: 5.408754e-03	ci right 5.633432e-03	k: 9274	n:1680000
Cons ci ratio: 4.347244e-04	ci left: 9.795431e-01	ci right 9.799696e-01	k: 1645992	n:1680000
KS ci ratio: 1.257624e-01	ci left: 5.416225e-04	ci right 6.148788e-04	k: 970	n:1680000
FAM75C1   1680000 perm   1541 sec   (1090 perm/sec)   p_kst 5.773810e-04   p_cons 9.797571e-01   p_joint 5.520238e-03

Joint ci ratio: 4.046873e-02	ci left: 5.409550e-03	ci right 5.633570e-03	k: 9330	n:1690000
Cons ci ratio: 4.334205e-04	ci left: 9.795451e-01	ci right 9.799704e-01	k: 1655792	n:1690000
KS ci ratio: 1.252474e-01	ci left: 5.430028e-04	ci right 6.161227e-04	k: 978	n:1690000
FAM75C1   1690000 perm   1557 sec   (1086 perm/sec)   p_kst 5.786982e-04   p_cons 9.797586e-01   p_joint 5.520710e-03

Joint ci ratio: 4.036080e-02	ci left: 5.406844e-03	ci right 5.630140e-03	k: 9380	n:1700000
Cons ci ratio: 4.321092e-04	ci left: 9.795490e-01	ci right 9.799729e-01	k: 1665595	n:1700000
KS ci ratio: 1.248020e-01	ci left: 5.437976e-04	ci right 6.167448e-04	k: 985	n:1700000
FAM75C1   1700000 perm   1573 sec   (1081 perm/sec)   p_kst 5.794118e-04   p_cons 9.797618e-01   p_joint 5.517647e-03

Joint ci ratio: 4.023229e-02	ci left: 5.409959e-03	ci right 5.632656e-03	k: 9440	n:1710000
Cons ci ratio: 4.308541e-04	ci left: 9.795487e-01	ci right 9.799714e-01	k: 1675391	n:1710000
KS ci ratio: 1.244868e-01	ci left: 5.434503e-04	ci right 6.161532e-04	k: 990	n:1710000
FAM75C1   1710000 perm   1589 sec   (1076 perm/sec)   p_kst 5.789474e-04   p_cons 9.797608e-01   p_joint 5.520468e-03

Joint ci ratio: 4.010500e-02	ci left: 5.413039e-03	ci right 5.635142e-03	k: 9500	n:1720000
Cons ci ratio: 4.295658e-04	ci left: 9.795524e-01	ci right 9.799739e-01	k: 1685194	n:1720000
KS ci ratio: 1.239252e-01	ci left: 5.453607e-04	ci right 6.179659e-04	k: 999	n:1720000
FAM75C1   1720000 perm   1606 sec   (1071 perm/sec)   p_kst 5.808140e-04   p_cons 9.797640e-01   p_joint 5.523256e-03

Joint ci ratio: 3.998311e-02	ci left: 5.414941e-03	ci right 5.636431e-03	k: 9558	n:1730000
Cons ci ratio: 4.282827e-04	ci left: 9.795567e-01	ci right 9.799769e-01	k: 1694998	n:1730000
KS ci ratio: 1.233712e-01	ci left: 5.472498e-04	ci right 6.197570e-04	k: 1008	n:1730000
FAM75C1   1730000 perm   1622 sec   (1066 perm/sec)   p_kst 5.826590e-04   p_cons 9.797676e-01   p_joint 5.524855e-03

Joint ci ratio: 3.988527e-02	ci left: 5.410562e-03	ci right 5.631319e-03	k: 9605	n:1740000
Cons ci ratio: 4.271782e-04	ci left: 9.795454e-01	ci right 9.799645e-01	k: 1704775	n:1740000
KS ci ratio: 1.231274e-01	ci left: 5.463326e-04	ci right 6.185649e-04	k: 1012	n:1740000
FAM75C1   1740000 perm   1639 sec   (1061 perm/sec)   p_kst 5.816092e-04   p_cons 9.797557e-01   p_joint 5.520115e-03

Joint ci ratio: 3.977986e-02	ci left: 5.408497e-03	ci right 5.628573e-03	k: 9656	n:1750000
Cons ci ratio: 4.259716e-04	ci left: 9.795445e-01	ci right 9.799624e-01	k: 1714570	n:1750000
KS ci ratio: 1.229456e-01	ci left: 5.448722e-04	ci right 6.167973e-04	k: 1015	n:1750000
FAM75C1   1750000 perm   1655 sec   (1057 perm/sec)   p_kst 5.800000e-04   p_cons 9.797543e-01   p_joint 5.517714e-03

Joint ci ratio: 3.967322e-02	ci left: 5.407019e-03	ci right 5.626432e-03	k: 9708	n:1760000
Cons ci ratio: 4.248360e-04	ci left: 9.795380e-01	ci right 9.799548e-01	k: 1724355	n:1760000
KS ci ratio: 1.225842e-01	ci left: 5.450807e-04	ci right 6.168064e-04	k: 1021	n:1760000
FAM75C1   1760000 perm   1673 sec   (1052 perm/sec)   p_kst 5.801136e-04   p_cons 9.797472e-01   p_joint 5.515909e-03

Joint ci ratio: 3.956744e-02	ci left: 5.405558e-03	ci right 5.624313e-03	k: 9760	n:1770000
Cons ci ratio: 4.236852e-04	ci left: 9.795338e-01	ci right 9.799494e-01	k: 1734144	n:1770000
KS ci ratio: 1.222854e-01	ci left: 5.447395e-04	ci right 6.162330e-04	k: 1026	n:1770000
FAM75C1   1770000 perm   1690 sec   (1047 perm/sec)   p_kst 5.796610e-04   p_cons 9.797424e-01   p_joint 5.514124e-03

Joint ci ratio: 3.946250e-02	ci left: 5.404114e-03	ci right 5.622218e-03	k: 9812	n:1780000
Cons ci ratio: 4.226155e-04	ci left: 9.795228e-01	ci right 9.799374e-01	k: 1743921	n:1780000
KS ci ratio: 1.221667e-01	ci left: 5.427684e-04	ci right 6.139290e-04	k: 1028	n:1780000
FAM75C1   1780000 perm   1707 sec   (1043 perm/sec)   p_kst 5.775281e-04   p_cons 9.797309e-01   p_joint 5.512360e-03

Joint ci ratio: 3.934035e-02	ci left: 5.407667e-03	ci right 5.625223e-03	k: 9873	n:1790000
Cons ci ratio: 4.214352e-04	ci left: 9.795232e-01	ci right 9.799367e-01	k: 1753718	n:1790000
KS ci ratio: 1.218120e-01	ci left: 5.429858e-04	ci right 6.139534e-04	k: 1034	n:1790000
FAM75C1   1790000 perm   1724 sec   (1038 perm/sec)   p_kst 5.776536e-04   p_cons 9.797307e-01   p_joint 5.515642e-03

Joint ci ratio: 3.921933e-02	ci left: 5.411180e-03	ci right 5.628193e-03	k: 9934	n:1800000
Cons ci ratio: 4.203058e-04	ci left: 9.795197e-01	ci right 9.799321e-01	k: 1763508	n:1800000
KS ci ratio: 1.215774e-01	ci left: 5.421238e-04	ci right 6.128324e-04	k: 1038	n:1800000
FAM75C1   1800000 perm   1741 sec   (1034 perm/sec)   p_kst 5.766667e-04   p_cons 9.797267e-01   p_joint 5.518889e-03

Joint ci ratio: 3.913486e-02	ci left: 5.404808e-03	ci right 5.621088e-03	k: 9977	n:1810000
Cons ci ratio: 4.191039e-04	ci left: 9.795240e-01	ci right 9.799352e-01	k: 1773312	n:1810000
KS ci ratio: 1.211699e-01	ci left: 5.428787e-04	ci right 6.134313e-04	k: 1045	n:1810000
FAM75C1   1810000 perm   1758 sec   (1030 perm/sec)   p_kst 5.773481e-04   p_cons 9.797304e-01   p_joint 5.512155e-03

Joint ci ratio: 3.904115e-02	ci left: 5.401227e-03	ci right 5.616835e-03	k: 10025	n:1820000
Cons ci ratio: 4.180682e-04	ci left: 9.795134e-01	ci right 9.799235e-01	k: 1783089	n:1820000
KS ci ratio: 1.208813e-01	ci left: 5.425599e-04	ci right 6.128912e-04	k: 1050	n:1820000
FAM75C1   1820000 perm   1775 sec   (1025 perm/sec)   p_kst 5.769231e-04   p_cons 9.797192e-01   p_joint 5.508242e-03

Joint ci ratio: 3.398945e-02	ci left: 7.093183e-03	ci right 7.338981e-03	k: 13204	n:1830000
Cons ci ratio: 4.168796e-04	ci left: 9.795183e-01	ci right 9.799272e-01	k: 1792894	n:1830000
KS ci ratio: 1.205948e-01	ci left: 5.422448e-04	ci right 6.123568e-04	k: 1055	n:1830000
FAM75C1   1830000 perm   1794 sec   (1020 perm/sec)   p_kst 5.765027e-04   p_cons 9.797235e-01   p_joint 7.215301e-03

Joint ci ratio: 3.390231e-02	ci left: 7.091276e-03	ci right 7.336366e-03	k: 13272	n:1840000
Cons ci ratio: 4.157352e-04	ci left: 9.795198e-01	ci right 9.799276e-01	k: 1802693	n:1840000
KS ci ratio: 1.202537e-01	ci left: 5.424605e-04	ci right 6.123878e-04	k: 1061	n:1840000
FAM75C1   1840000 perm   1811 sec   (1016 perm/sec)   p_kst 5.766304e-04   p_cons 9.797245e-01   p_joint 7.213043e-03

Joint ci ratio: 3.380180e-02	ci left: 7.095286e-03	ci right 7.339774e-03	k: 13351	n:1850000
Cons ci ratio: 4.147242e-04	ci left: 9.795093e-01	ci right 9.799162e-01	k: 1812470	n:1850000
KS ci ratio: 1.199154e-01	ci left: 5.426741e-04	ci right 6.124183e-04	k: 1067	n:1850000
FAM75C1   1850000 perm   1829 sec   (1012 perm/sec)   p_kst 5.767568e-04   p_cons 9.797135e-01   p_joint 7.216757e-03

Joint ci ratio: 3.862163e-02	ci left: 5.401670e-03	ci right 5.614927e-03	k: 10244	n:1860000
Cons ci ratio: 4.136589e-04	ci left: 9.795050e-01	ci right 9.799108e-01	k: 1822258	n:1860000
KS ci ratio: 1.196915e-01	ci left: 5.418426e-04	ci right 6.113407e-04	k: 1071	n:1860000
FAM75C1   1860000 perm   1846 sec   (1008 perm/sec)   p_kst 5.758065e-04   p_cons 9.797086e-01   p_joint 5.507527e-03

Joint ci ratio: 3.852214e-02	ci left: 5.400853e-03	ci right 5.613517e-03	k: 10297	n:1870000
Cons ci ratio: 4.127627e-04	ci left: 9.794850e-01	ci right 9.798899e-01	k: 1832017	n:1870000
KS ci ratio: 1.195801e-01	ci left: 5.399825e-04	ci right 6.091730e-04	k: 1073	n:1870000
FAM75C1   1870000 perm   1864 sec   (1003 perm/sec)   p_kst 5.737968e-04   p_cons 9.796882e-01   p_joint 5.506417e-03

Joint ci ratio: 3.354911e-02	ci left: 7.088605e-03	ci right 7.331002e-03	k: 13553	n:1880000
Cons ci ratio: 4.116187e-04	ci left: 9.794899e-01	ci right 9.798937e-01	k: 1841822	n:1880000
KS ci ratio: 1.192475e-01	ci left: 5.402064e-04	ci right 6.092195e-04	k: 1079	n:1880000
FAM75C1   1880000 perm   1883 sec   (999 perm/sec)   p_kst 5.739362e-04   p_cons 9.796926e-01   p_joint 7.209043e-03

Joint ci ratio: 3.348512e-02	ci left: 7.078382e-03	ci right 7.319958e-03	k: 13605	n:1890000
Cons ci ratio: 4.105388e-04	ci left: 9.794894e-01	ci right 9.798922e-01	k: 1851617	n:1890000
KS ci ratio: 1.191374e-01	ci left: 5.383748e-04	ci right 6.070859e-04	k: 1081	n:1890000
FAM75C1   1890000 perm   1900 sec   (995 perm/sec)   p_kst 5.719577e-04   p_cons 9.796915e-01   p_joint 7.198413e-03

Joint ci ratio: 3.340548e-02	ci left: 7.075051e-03	ci right 7.315928e-03	k: 13670	n:1900000
Cons ci ratio: 4.095432e-04	ci left: 9.794816e-01	ci right 9.798833e-01	k: 1861398	n:1900000
KS ci ratio: 1.190825e-01	ci left: 5.360518e-04	ci right 6.044327e-04	k: 1082	n:1900000
FAM75C1   1900000 perm   1917 sec   (991 perm/sec)   p_kst 5.694737e-04   p_cons 9.796832e-01   p_joint 7.194737e-03

Joint ci ratio: 3.819939e-02	ci left: 5.378490e-03	ci right 5.588459e-03	k: 10472	n:1910000
Cons ci ratio: 4.086030e-04	ci left: 9.794690e-01	ci right 9.798698e-01	k: 1871170	n:1910000
KS ci ratio: 1.187540e-01	ci left: 5.362932e-04	ci right 6.045029e-04	k: 1088	n:1910000
FAM75C1   1910000 perm   1936 sec   (987 perm/sec)   p_kst 5.696335e-04   p_cons 9.796702e-01   p_joint 5.482723e-03

Joint ci ratio: 3.808857e-02	ci left: 5.381945e-03	ci right 5.591426e-03	k: 10533	n:1920000
Cons ci ratio: 4.075146e-04	ci left: 9.794718e-01	ci right 9.798715e-01	k: 1880971	n:1920000
KS ci ratio: 1.186452e-01	ci left: 5.345107e-04	ci right 6.024271e-04	k: 1090	n:1920000
FAM75C1   1920000 perm   1953 sec   (983 perm/sec)   p_kst 5.677083e-04   p_cons 9.796724e-01   p_joint 5.485938e-03

Joint ci ratio: 3.799132e-02	ci left: 5.381772e-03	ci right 5.590700e-03	k: 10587	n:1930000
Cons ci ratio: 4.064032e-04	ci left: 9.794777e-01	ci right 9.798763e-01	k: 1890778	n:1930000
KS ci ratio: 1.183743e-01	ci left: 5.342551e-04	ci right 6.019731e-04	k: 1095	n:1930000
FAM75C1   1930000 perm   1971 sec   (979 perm/sec)   p_kst 5.673575e-04   p_cons 9.796777e-01   p_joint 5.485492e-03

Joint ci ratio: 3.307101e-02	ci left: 7.071282e-03	ci right 7.309574e-03	k: 13948	n:1940000
Cons ci ratio: 4.054162e-04	ci left: 9.794721e-01	ci right 9.798698e-01	k: 1900563	n:1940000
KS ci ratio: 1.178378e-01	ci left: 5.365036e-04	ci right 6.041770e-04	k: 1105	n:1940000
FAM75C1   1940000 perm   1991 sec   (974 perm/sec)   p_kst 5.695876e-04   p_cons 9.796716e-01   p_joint 7.189691e-03

Joint ci ratio: 3.777066e-02	ci left: 5.389562e-03	ci right 5.597551e-03	k: 10711	n:1950000
Cons ci ratio: 4.043374e-04	ci left: 9.794764e-01	ci right 9.798730e-01	k: 1910367	n:1950000
KS ci ratio: 1.174666e-01	ci left: 5.372364e-04	ci right 6.047740e-04	k: 1112	n:1950000
FAM75C1   1950000 perm   2011 sec   (969 perm/sec)   p_kst 5.702564e-04   p_cons 9.796754e-01   p_joint 5.492821e-03

Joint ci ratio: 3.289339e-02	ci left: 7.075532e-03	ci right 7.312663e-03	k: 14099	n:1960000
Cons ci ratio: 4.034324e-04	ci left: 9.794642e-01	ci right 9.798599e-01	k: 1920139	n:1960000
KS ci ratio: 1.169423e-01	ci left: 5.394479e-04	ci right 6.069399e-04	k: 1122	n:1960000
FAM75C1   1960000 perm   2030 sec   (966 perm/sec)   p_kst 5.724490e-04   p_cons 9.796628e-01   p_joint 7.193367e-03

Joint ci ratio: 3.251862e-02	ci left: 7.203248e-03	ci right 7.441858e-03	k: 14424	n:1970000
Cons ci ratio: 4.024001e-04	ci left: 9.794654e-01	ci right 9.798601e-01	k: 1929937	n:1970000
KS ci ratio: 1.163736e-01	ci left: 5.421305e-04	ci right 6.096055e-04	k: 1133	n:1970000
FAM75C1   1970000 perm   2048 sec   (962 perm/sec)   p_kst 5.751269e-04   p_cons 9.796635e-01   p_joint 7.321827e-03

Joint ci ratio: 3.271976e-02	ci left: 7.079198e-03	ci right 7.315176e-03	k: 14249	n:1980000
Cons ci ratio: 4.013197e-04	ci left: 9.794722e-01	ci right 9.798658e-01	k: 1939746	n:1980000
KS ci ratio: 1.159652e-01	ci left: 5.433155e-04	ci right 6.106844e-04	k: 1141	n:1980000
FAM75C1   1980000 perm   2067 sec   (958 perm/sec)   p_kst 5.762626e-04   p_cons 9.796697e-01   p_joint 7.196465e-03

Joint ci ratio: 3.265349e-02	ci left: 7.072531e-03	ci right 7.307801e-03	k: 14307	n:1990000
Cons ci ratio: 4.003490e-04	ci left: 9.794688e-01	ci right 9.798615e-01	k: 1949535	n:1990000
KS ci ratio: 1.157122e-01	ci left: 5.430250e-04	ci right 6.102010e-04	k: 1146	n:1990000
FAM75C1   1990000 perm   2086 sec   (954 perm/sec)   p_kst 5.758794e-04   p_cons 9.796658e-01   p_joint 7.189447e-03

Joint ci ratio: 3.257506e-02	ci left: 7.071387e-03	ci right 7.306043e-03	k: 14376	n:2000000
Cons ci ratio: 3.992799e-04	ci left: 9.794760e-01	ci right 9.798676e-01	k: 1959345	n:2000000
KS ci ratio: 1.155612e-01	ci left: 5.417665e-04	ci right 6.086934e-04	k: 1149	n:2000000
FAM75C1   2000000 perm   2104 sec   (951 perm/sec)   p_kst 5.745000e-04   p_cons 9.796725e-01   p_joint 7.188000e-03

Joint ci ratio: 3.249493e-02	ci left: 7.071242e-03	ci right 7.305305e-03	k: 14447	n:2010000
Cons ci ratio: 3.983537e-04	ci left: 9.794696e-01	ci right 9.798604e-01	k: 1969128	n:2010000
KS ci ratio: 1.153608e-01	ci left: 5.410037e-04	ci right 6.077126e-04	k: 1153	n:2010000
FAM75C1   2010000 perm   2121 sec   (948 perm/sec)   p_kst 5.736318e-04   p_cons 9.796657e-01   p_joint 7.187562e-03

Joint ci ratio: 3.242438e-02	ci left: 7.067171e-03	ci right 7.300582e-03	k: 14510	n:2020000
Cons ci ratio: 3.973450e-04	ci left: 9.794723e-01	ci right 9.798620e-01	k: 1978929	n:2020000
KS ci ratio: 1.151615e-01	ci left: 5.402485e-04	ci right 6.067414e-04	k: 1157	n:2020000
FAM75C1   2020000 perm   2141 sec   (943 perm/sec)   p_kst 5.727723e-04   p_cons 9.796678e-01   p_joint 7.183168e-03

Joint ci ratio: 3.234089e-02	ci left: 7.069004e-03	ci right 7.301863e-03	k: 14585	n:2030000
Cons ci ratio: 3.962949e-04	ci left: 9.794798e-01	ci right 9.798686e-01	k: 1988740	n:2030000
KS ci ratio: 1.147164e-01	ci left: 5.418933e-04	ci right 6.083134e-04	k: 1166	n:2030000
FAM75C1   2030000 perm   2162 sec   (939 perm/sec)   p_kst 5.743842e-04   p_cons 9.796749e-01   p_joint 7.184729e-03

Joint ci ratio: 3.224032e-02	ci left: 7.078600e-03	ci right 7.311037e-03	k: 14676	n:2040000
Cons ci ratio: 3.952920e-04	ci left: 9.794834e-01	ci right 9.798711e-01	k: 1998543	n:2040000
KS ci ratio: 1.143252e-01	ci left: 5.430462e-04	ci right 6.093653e-04	k: 1174	n:2040000
FAM75C1   2040000 perm   2181 sec   (935 perm/sec)   p_kst 5.754902e-04   p_cons 9.796779e-01   p_joint 7.194118e-03

Joint ci ratio: 3.216153e-02	ci left: 7.078910e-03	ci right 7.310778e-03	k: 14748	n:2050000
Cons ci ratio: 3.943304e-04	ci left: 9.794835e-01	ci right 9.798703e-01	k: 2008339	n:2050000
KS ci ratio: 1.141796e-01	ci left: 5.418188e-04	ci right 6.078980e-04	k: 1177	n:2050000
FAM75C1   2050000 perm   2201 sec   (931 perm/sec)   p_kst 5.741463e-04   p_cons 9.796776e-01   p_joint 7.194146e-03

Joint ci ratio: 3.208877e-02	ci left: 7.076809e-03	ci right 7.308075e-03	k: 14815	n:2060000
Cons ci ratio: 3.932751e-04	ci left: 9.794938e-01	ci right 9.798796e-01	k: 2018156	n:2060000
KS ci ratio: 1.136979e-01	ci left: 5.439046e-04	ci right 6.099397e-04	k: 1187	n:2060000
FAM75C1   2060000 perm   2221 sec   (927 perm/sec)   p_kst 5.762136e-04   p_cons 9.796874e-01   p_joint 7.191748e-03

Joint ci ratio: 3.239576e-02	ci left: 6.909874e-03	ci right 7.137885e-03	k: 14538	n:2070000
Cons ci ratio: 3.921805e-04	ci left: 9.795089e-01	ci right 9.798936e-01	k: 2027983	n:2070000
KS ci ratio: 1.136024e-01	ci left: 5.422158e-04	ci right 6.079868e-04	k: 1189	n:2070000
FAM75C1   2070000 perm   2242 sec   (923 perm/sec)   p_kst 5.743961e-04   p_cons 9.797019e-01   p_joint 7.023188e-03

Joint ci ratio: 3.232028e-02	ci left: 6.909082e-03	ci right 7.136525e-03	k: 14606	n:2080000
Cons ci ratio: 3.913549e-04	ci left: 9.794973e-01	ci right 9.798812e-01	k: 2037755	n:2080000
KS ci ratio: 1.130338e-01	ci left: 5.452147e-04	ci right 6.109964e-04	k: 1201	n:2080000
FAM75C1   2080000 perm   2260 sec   (920 perm/sec)   p_kst 5.774038e-04   p_cons 9.796899e-01   p_joint 7.022115e-03

Joint ci ratio: 3.224976e-02	ci left: 6.906398e-03	ci right 7.133248e-03	k: 14670	n:2090000
Cons ci ratio: 3.905062e-04	ci left: 9.794887e-01	ci right 9.798717e-01	k: 2047533	n:2090000
KS ci ratio: 1.128462e-01	ci left: 5.444658e-04	ci right 6.100409e-04	k: 1205	n:2090000
FAM75C1   2090000 perm   2278 sec   (917 perm/sec)   p_kst 5.765550e-04   p_cons 9.796809e-01   p_joint 7.019139e-03

Joint ci ratio: 3.218849e-02	ci left: 6.899962e-03	ci right 7.126162e-03	k: 14726	n:2100000
Cons ci ratio: 3.896909e-04	ci left: 9.794773e-01	ci right 9.798595e-01	k: 2057305	n:2100000
KS ci ratio: 1.127062e-01	ci left: 5.432614e-04	ci right 6.086048e-04	k: 1208	n:2100000
FAM75C1   2100000 perm   2297 sec   (914 perm/sec)   p_kst 5.752381e-04   p_cons 9.796690e-01   p_joint 7.012381e-03

Joint ci ratio: 3.210790e-02	ci left: 6.902050e-03	ci right 7.127742e-03	k: 14800	n:2110000
Cons ci ratio: 3.886909e-04	ci left: 9.794855e-01	ci right 9.798667e-01	k: 2067118	n:2110000
KS ci ratio: 1.125203e-01	ci left: 5.425290e-04	ci right 6.076695e-04	k: 1212	n:2110000
FAM75C1   2110000 perm   2316 sec   (911 perm/sec)   p_kst 5.744076e-04   p_cons 9.796768e-01   p_joint 7.014218e-03

Joint ci ratio: 3.166023e-02	ci left: 7.065569e-03	ci right 7.293328e-03	k: 15219	n:2120000
Cons ci ratio: 3.876893e-04	ci left: 9.794946e-01	ci right 9.798749e-01	k: 2076933	n:2120000
KS ci ratio: 1.123352e-01	ci left: 5.418036e-04	ci right 6.067430e-04	k: 1216	n:2120000
FAM75C1   2120000 perm   2335 sec   (908 perm/sec)   p_kst 5.735849e-04   p_cons 9.796854e-01   p_joint 7.178774e-03

Joint ci ratio: 3.159081e-02	ci left: 7.063604e-03	ci right 7.290791e-03	k: 15286	n:2130000
Cons ci ratio: 3.867182e-04	ci left: 9.795012e-01	ci right 9.798806e-01	k: 2086743	n:2130000
KS ci ratio: 1.120593e-01	ci left: 5.419978e-04	ci right 6.067904e-04	k: 1222	n:2130000
FAM75C1   2130000 perm   2355 sec   (905 perm/sec)   p_kst 5.737089e-04   p_cons 9.796915e-01   p_joint 7.176526e-03

Joint ci ratio: 3.188787e-02	ci left: 6.900321e-03	ci right 7.124381e-03	k: 15005	n:2140000
Cons ci ratio: 3.859038e-04	ci left: 9.794923e-01	ci right 9.798709e-01	k: 2096520	n:2140000
KS ci ratio: 1.119222e-01	ci left: 5.408277e-04	ci right 6.053961e-04	k: 1225	n:2140000
FAM75C1   2140000 perm   2374 sec   (901 perm/sec)   p_kst 5.724299e-04   p_cons 9.796822e-01   p_joint 7.011682e-03

Joint ci ratio: 3.116556e-02	ci left: 7.190796e-03	ci right 7.418906e-03	k: 15704	n:2150000
Cons ci ratio: 3.850899e-04	ci left: 9.794840e-01	ci right 9.798617e-01	k: 2106298	n:2150000
KS ci ratio: 1.117856e-01	ci left: 5.396685e-04	ci right 6.040147e-04	k: 1228	n:2150000
FAM75C1   2150000 perm   2393 sec   (898 perm/sec)   p_kst 5.711628e-04   p_cons 9.796735e-01   p_joint 7.304186e-03

Joint ci ratio: 3.108941e-02	ci left: 7.192876e-03	ci right 7.420485e-03	k: 15781	n:2160000
Cons ci ratio: 3.842766e-04	ci left: 9.794762e-01	ci right 9.798531e-01	k: 2116077	n:2160000
KS ci ratio: 1.113784e-01	ci left: 5.412205e-04	ci right 6.055012e-04	k: 1237	n:2160000
FAM75C1   2160000 perm   2412 sec   (896 perm/sec)   p_kst 5.726852e-04   p_cons 9.796653e-01   p_joint 7.306019e-03

Joint ci ratio: 3.101776e-02	ci left: 7.193109e-03	ci right 7.420190e-03	k: 15854	n:2170000
Cons ci ratio: 3.833665e-04	ci left: 9.794791e-01	ci right 9.798551e-01	k: 2125879	n:2170000
KS ci ratio: 1.110203e-01	ci left: 5.423105e-04	ci right 6.064999e-04	k: 1245	n:2170000
FAM75C1   2170000 perm   2431 sec   (893 perm/sec)   p_kst 5.737327e-04   p_cons 9.796677e-01   p_joint 7.305991e-03

Joint ci ratio: 3.094562e-02	ci left: 7.193795e-03	ci right 7.420361e-03	k: 15928	n:2180000
Cons ci ratio: 3.824671e-04	ci left: 9.794815e-01	ci right 9.798567e-01	k: 2135680	n:2180000
KS ci ratio: 1.107982e-01	ci left: 5.420528e-04	ci right 6.060750e-04	k: 1250	n:2180000
FAM75C1   2180000 perm   2450 sec   (890 perm/sec)   p_kst 5.733945e-04   p_cons 9.796697e-01   p_joint 7.306422e-03

Joint ci ratio: 3.152341e-02	ci left: 6.900877e-03	ci right 7.122348e-03	k: 15354	n:2190000
Cons ci ratio: 3.816134e-04	ci left: 9.794798e-01	ci right 9.798541e-01	k: 2145472	n:2190000
KS ci ratio: 1.106215e-01	ci left: 5.413535e-04	ci right 6.051846e-04	k: 1254	n:2190000
FAM75C1   2190000 perm   2472 sec   (886 perm/sec)   p_kst 5.726027e-04   p_cons 9.796676e-01   p_joint 7.010959e-03

Joint ci ratio: 3.608968e-02	ci left: 5.237814e-03	ci right 5.430765e-03	k: 11734	n:2200000
Cons ci ratio: 3.807090e-04	ci left: 9.794840e-01	ci right 9.798574e-01	k: 2155277	n:2200000
KS ci ratio: 1.104896e-01	ci left: 5.402187e-04	ci right 6.038351e-04	k: 1257	n:2200000
FAM75C1   2200000 perm   2492 sec   (883 perm/sec)   p_kst 5.713636e-04   p_cons 9.796714e-01   p_joint 5.333636e-03

Joint ci ratio: 3.601768e-02	ci left: 5.235188e-03	ci right 5.427650e-03	k: 11781	n:2210000
Cons ci ratio: 3.798281e-04	ci left: 9.794864e-01	ci right 9.798589e-01	k: 2165078	n:2210000
KS ci ratio: 1.100964e-01	ci left: 5.417344e-04	ci right 6.052875e-04	k: 1266	n:2210000
FAM75C1   2210000 perm   2514 sec   (879 perm/sec)   p_kst 5.728507e-04   p_cons 9.796733e-01   p_joint 5.330769e-03

Joint ci ratio: 3.593847e-02	ci left: 5.234819e-03	ci right 5.426835e-03	k: 11833	n:2220000
Cons ci ratio: 3.788762e-04	ci left: 9.794969e-01	ci right 9.798685e-01	k: 2174897	n:2220000
KS ci ratio: 1.097935e-01	ci left: 5.423606e-04	ci right 6.058008e-04	k: 1273	n:2220000
FAM75C1   2220000 perm   2534 sec   (876 perm/sec)   p_kst 5.734234e-04   p_cons 9.796833e-01   p_joint 5.330180e-03

Joint ci ratio: 3.585826e-02	ci left: 5.234898e-03	ci right 5.426480e-03	k: 11886	n:2230000
Cons ci ratio: 3.780165e-04	ci left: 9.794983e-01	ci right 9.798691e-01	k: 2184696	n:2230000
KS ci ratio: 1.095787e-01	ci left: 5.421091e-04	ci right 6.053878e-04	k: 1278	n:2230000
FAM75C1   2230000 perm   2556 sec   (872 perm/sec)   p_kst 5.730942e-04   p_cons 9.796843e-01   p_joint 5.330045e-03

Joint ci ratio: 3.578311e-02	ci left: 5.233649e-03	ci right 5.424776e-03	k: 11936	n:2240000
Cons ci ratio: 3.771161e-04	ci left: 9.795046e-01	ci right 9.798745e-01	k: 2194506	n:2240000
KS ci ratio: 1.093651e-01	ci left: 5.418600e-04	ci right 6.049785e-04	k: 1283	n:2240000
FAM75C1   2240000 perm   2577 sec   (869 perm/sec)   p_kst 5.727679e-04   p_cons 9.796902e-01   p_joint 5.328571e-03

Joint ci ratio: 3.571592e-02	ci left: 5.230210e-03	ci right 5.420845e-03	k: 11981	n:2250000
Cons ci ratio: 3.761422e-04	ci left: 9.795194e-01	ci right 9.798883e-01	k: 2204335	n:2250000
KS ci ratio: 1.092802e-01	ci left: 5.403163e-04	ci right 6.032029e-04	k: 1285	n:2250000
FAM75C1   2250000 perm   2596 sec   (867 perm/sec)   p_kst 5.711111e-04   p_cons 9.797044e-01   p_joint 5.324889e-03

Joint ci ratio: 3.564315e-02	ci left: 5.228555e-03	ci right 5.418733e-03	k: 12030	n:2260000
Cons ci ratio: 3.753427e-04	ci left: 9.795162e-01	ci right 9.798843e-01	k: 2214124	n:2260000
KS ci ratio: 1.090261e-01	ci left: 5.405079e-04	ci right 6.032612e-04	k: 1291	n:2260000
FAM75C1   2260000 perm   2616 sec   (864 perm/sec)   p_kst 5.712389e-04   p_cons 9.797009e-01   p_joint 5.323009e-03

Joint ci ratio: 3.557378e-02	ci left: 5.226042e-03	ci right 5.415752e-03	k: 12077	n:2270000
Cons ci ratio: 3.744363e-04	ci left: 9.795250e-01	ci right 9.798923e-01	k: 2223940	n:2270000
KS ci ratio: 1.088998e-01	ci left: 5.394124e-04	ci right 6.019612e-04	k: 1294	n:2270000
FAM75C1   2270000 perm   2637 sec   (861 perm/sec)   p_kst 5.700441e-04   p_cons 9.797093e-01   p_joint 5.320264e-03

Joint ci ratio: 3.548863e-02	ci left: 5.228334e-03	ci right 5.417663e-03	k: 12135	n:2280000
Cons ci ratio: 3.736228e-04	ci left: 9.795245e-01	ci right 9.798910e-01	k: 2233735	n:2280000
KS ci ratio: 1.086067e-01	ci left: 5.400332e-04	ci right 6.024747e-04	k: 1301	n:2280000
FAM75C1   2280000 perm   2657 sec   (858 perm/sec)   p_kst 5.706140e-04   p_cons 9.797083e-01   p_joint 5.322368e-03

Joint ci ratio: 3.083532e-02	ci left: 6.899789e-03	ci right 7.116307e-03	k: 16047	n:2290000
Cons ci ratio: 3.727696e-04	ci left: 9.795288e-01	ci right 9.798944e-01	k: 2243541	n:2290000
KS ci ratio: 1.083158e-01	ci left: 5.406489e-04	ci right 6.029834e-04	k: 1308	n:2290000
FAM75C1   2290000 perm   2678 sec   (855 perm/sec)   p_kst 5.711790e-04   p_cons 9.797122e-01   p_joint 7.007424e-03

Joint ci ratio: 3.077790e-02	ci left: 6.895676e-03	ci right 7.111655e-03	k: 16107	n:2300000
Cons ci ratio: 3.719629e-04	ci left: 9.795287e-01	ci right 9.798936e-01	k: 2253337	n:2300000
KS ci ratio: 1.081508e-01	ci left: 5.399903e-04	ci right 6.021480e-04	k: 1312	n:2300000
FAM75C1   2300000 perm   2697 sec   (853 perm/sec)   p_kst 5.704348e-04   p_cons 9.797117e-01   p_joint 7.003043e-03

Joint ci ratio: 3.525266e-02	ci left: 5.230372e-03	ci right 5.418490e-03	k: 12298	n:2310000
Cons ci ratio: 3.712059e-04	ci left: 9.795238e-01	ci right 9.798879e-01	k: 2263122	n:2310000
KS ci ratio: 1.079864e-01	ci left: 5.393374e-04	ci right 6.013197e-04	k: 1316	n:2310000
FAM75C1   2310000 perm   2718 sec   (850 perm/sec)   p_kst 5.696970e-04   p_cons 9.797065e-01   p_joint 5.323810e-03

Joint ci ratio: 3.517838e-02	ci left: 5.230044e-03	ci right 5.417746e-03	k: 12350	n:2320000
Cons ci ratio: 3.704976e-04	ci left: 9.795143e-01	ci right 9.798777e-01	k: 2272896	n:2320000
KS ci ratio: 1.077821e-01	ci left: 5.391097e-04	ci right 6.009411e-04	k: 1321	n:2320000
FAM75C1   2320000 perm   2738 sec   (847 perm/sec)   p_kst 5.693966e-04   p_cons 9.796966e-01   p_joint 5.323276e-03

Joint ci ratio: 3.508751e-02	ci left: 5.234824e-03	ci right 5.422202e-03	k: 12414	n:2330000
Cons ci ratio: 3.697175e-04	ci left: 9.795129e-01	ci right 9.798756e-01	k: 2282689	n:2330000
KS ci ratio: 1.075788e-01	ci left: 5.388841e-04	ci right 6.005656e-04	k: 1326	n:2330000
FAM75C1   2330000 perm   2759 sec   (844 perm/sec)   p_kst 5.690987e-04   p_cons 9.796948e-01   p_joint 5.327897e-03

Joint ci ratio: 3.390423e-02	ci left: 5.584025e-03	ci right 5.777031e-03	k: 13291	n:2340000
Cons ci ratio: 3.689304e-04	ci left: 9.795129e-01	ci right 9.798748e-01	k: 2292485	n:2340000
KS ci ratio: 1.072560e-01	ci left: 5.399081e-04	ci right 6.015097e-04	k: 1334	n:2340000
FAM75C1   2340000 perm   2780 sec   (842 perm/sec)   p_kst 5.700855e-04   p_cons 9.796944e-01   p_joint 5.679915e-03

Joint ci ratio: 3.044981e-02	ci left: 6.896334e-03	ci right 7.109990e-03	k: 16456	n:2350000
Cons ci ratio: 3.682231e-04	ci left: 9.795048e-01	ci right 9.798659e-01	k: 2302262	n:2350000
KS ci ratio: 1.068564e-01	ci left: 5.417520e-04	ci right 6.033193e-04	k: 1344	n:2350000
FAM75C1   2350000 perm   2803 sec   (838 perm/sec)   p_kst 5.719149e-04   p_cons 9.796860e-01   p_joint 7.002553e-03

Joint ci ratio: 3.487612e-02	ci left: 5.231703e-03	ci right 5.417819e-03	k: 12565	n:2360000
Cons ci ratio: 3.673007e-04	ci left: 9.795206e-01	ci right 9.798808e-01	k: 2312095	n:2360000
KS ci ratio: 1.066583e-01	ci left: 5.415185e-04	ci right 6.029381e-04	k: 1349	n:2360000
FAM75C1   2360000 perm   2825 sec   (835 perm/sec)   p_kst 5.716102e-04   p_cons 9.797013e-01   p_joint 5.324153e-03

Joint ci ratio: 3.479033e-02	ci left: 5.235561e-03	ci right 5.421347e-03	k: 12627	n:2370000
Cons ci ratio: 3.665406e-04	ci left: 9.795192e-01	ci right 9.798787e-01	k: 2321888	n:2370000
KS ci ratio: 1.065007e-01	ci left: 5.408764e-04	ci right 6.021268e-04	k: 1353	n:2370000
FAM75C1   2370000 perm   2846 sec   (833 perm/sec)   p_kst 5.708861e-04   p_cons 9.796996e-01   p_joint 5.327848e-03

Joint ci ratio: 3.471068e-02	ci left: 5.237721e-03	ci right 5.423150e-03	k: 12685	n:2380000
Cons ci ratio: 3.658431e-04	ci left: 9.795116e-01	ci right 9.798704e-01	k: 2331666	n:2380000
KS ci ratio: 1.063046e-01	ci left: 5.406488e-04	ci right 6.017535e-04	k: 1358	n:2380000
FAM75C1   2380000 perm   2866 sec   (830 perm/sec)   p_kst 5.705882e-04   p_cons 9.796916e-01   p_joint 5.329832e-03

Joint ci ratio: 3.463976e-02	ci left: 5.237375e-03	ci right 5.422404e-03	k: 12737	n:2390000
Cons ci ratio: 3.651035e-04	ci left: 9.795091e-01	ci right 9.798672e-01	k: 2341456	n:2390000
KS ci ratio: 1.059156e-01	ci left: 5.424597e-04	ci right 6.035308e-04	k: 1368	n:2390000
FAM75C1   2390000 perm   2887 sec   (828 perm/sec)   p_kst 5.723849e-04   p_cons 9.796887e-01   p_joint 5.329289e-03

Joint ci ratio: 3.456793e-02	ci left: 5.237445e-03	ci right 5.422086e-03	k: 12790	n:2400000
Cons ci ratio: 3.643493e-04	ci left: 9.795087e-01	ci right 9.798660e-01	k: 2351251	n:2400000
KS ci ratio: 1.056074e-01	ci left: 5.434446e-04	ci right 6.044376e-04	k: 1376	n:2400000
FAM75C1   2400000 perm   2908 sec   (825 perm/sec)   p_kst 5.733333e-04   p_cons 9.796879e-01   p_joint 5.329167e-03

Joint ci ratio: 3.450599e-02	ci left: 5.234635e-03	ci right 5.418839e-03	k: 12836	n:2410000
Cons ci ratio: 3.636527e-04	ci left: 9.795024e-01	ci right 9.798591e-01	k: 2361032	n:2410000
KS ci ratio: 1.054544e-01	ci left: 5.428056e-04	ci right 6.036331e-04	k: 1380	n:2410000
FAM75C1   2410000 perm   2930 sec   (823 perm/sec)   p_kst 5.726141e-04   p_cons 9.796813e-01   p_joint 5.326141e-03

Joint ci ratio: 3.444169e-02	ci left: 5.232668e-03	ci right 5.416453e-03	k: 12884	n:2420000
Cons ci ratio: 3.628735e-04	ci left: 9.795058e-01	ci right 9.798617e-01	k: 2370836	n:2420000
KS ci ratio: 1.051502e-01	ci left: 5.437814e-04	ci right 6.045315e-04	k: 1388	n:2420000
FAM75C1   2420000 perm   2953 sec   (820 perm/sec)   p_kst 5.735537e-04   p_cons 9.796843e-01   p_joint 5.323967e-03

Joint ci ratio: 3.437108e-02	ci left: 5.232757e-03	ci right 5.416162e-03	k: 12937	n:2430000
Cons ci ratio: 3.620993e-04	ci left: 9.795091e-01	ci right 9.798642e-01	k: 2380640	n:2430000
KS ci ratio: 1.048487e-01	ci left: 5.447493e-04	ci right 6.054223e-04	k: 1396	n:2430000
FAM75C1   2430000 perm   2977 sec   (816 perm/sec)   p_kst 5.744856e-04   p_cons 9.796872e-01   p_joint 5.323868e-03

Joint ci ratio: 3.322877e-02	ci left: 5.577063e-03	ci right 5.765916e-03	k: 13837	n:2440000
Cons ci ratio: 3.613858e-04	ci left: 9.795062e-01	ci right 9.798607e-01	k: 2390429	n:2440000
KS ci ratio: 1.046242e-01	ci left: 5.449113e-04	ci right 6.054645e-04	k: 1402	n:2440000
FAM75C1   2440000 perm   2999 sec   (814 perm/sec)   p_kst 5.745902e-04   p_cons 9.796840e-01   p_joint 5.670902e-03

Joint ci ratio: 3.423378e-02	ci left: 5.232125e-03	ci right 5.414761e-03	k: 13041	n:2450000
Cons ci ratio: 3.606839e-04	ci left: 9.795026e-01	ci right 9.798563e-01	k: 2400216	n:2450000
KS ci ratio: 1.043272e-01	ci left: 5.458672e-04	ci right 6.063438e-04	k: 1410	n:2450000
FAM75C1   2450000 perm   3020 sec   (811 perm/sec)   p_kst 5.755102e-04   p_cons 9.796800e-01   p_joint 5.322857e-03

Joint ci ratio: 3.416050e-02	ci left: 5.233426e-03	ci right 5.415709e-03	k: 13097	n:2460000
Cons ci ratio: 3.599824e-04	ci left: 9.794993e-01	ci right 9.798524e-01	k: 2410004	n:2460000
KS ci ratio: 1.042165e-01	ci left: 5.448359e-04	ci right 6.051303e-04	k: 1413	n:2460000
FAM75C1   2460000 perm   3042 sec   (809 perm/sec)   p_kst 5.743902e-04   p_cons 9.796764e-01   p_joint 5.323984e-03

Joint ci ratio: 3.411116e-02	ci left: 5.227491e-03	ci right 5.409299e-03	k: 13135	n:2470000
Cons ci ratio: 3.592046e-04	ci left: 9.795051e-01	ci right 9.798574e-01	k: 2419814	n:2470000
KS ci ratio: 1.041062e-01	ci left: 5.438130e-04	ci right 6.039266e-04	k: 1416	n:2470000
FAM75C1   2470000 perm   3064 sec   (806 perm/sec)   p_kst 5.732794e-04   p_cons 9.796818e-01   p_joint 5.317814e-03

Joint ci ratio: 3.404645e-02	ci left: 5.226402e-03	ci right 5.407820e-03	k: 13185	n:2480000
Cons ci ratio: 3.585552e-04	ci left: 9.794970e-01	ci right 9.798487e-01	k: 2429590	n:2480000
KS ci ratio: 1.039962e-01	ci left: 5.427984e-04	ci right 6.027326e-04	k: 1419	n:2480000
FAM75C1   2480000 perm   3085 sec   (804 perm/sec)   p_kst 5.721774e-04   p_cons 9.796734e-01   p_joint 5.316532e-03

Joint ci ratio: 3.398985e-02	ci left: 5.222933e-03	ci right 5.403923e-03	k: 13229	n:2490000
Cons ci ratio: 3.578696e-04	ci left: 9.794934e-01	ci right 9.798444e-01	k: 2439377	n:2490000
KS ci ratio: 1.039597e-01	ci left: 5.410096e-04	ci right 6.007240e-04	k: 1420	n:2490000
FAM75C1   2490000 perm   3107 sec   (801 perm/sec)   p_kst 5.702811e-04   p_cons 9.796695e-01   p_joint 5.312851e-03

Joint ci ratio: 3.391812e-02	ci left: 5.224251e-03	ci right 5.404898e-03	k: 13285	n:2500000
Cons ci ratio: 3.571377e-04	ci left: 9.794955e-01	ci right 9.798458e-01	k: 2449178	n:2500000
KS ci ratio: 1.037409e-01	ci left: 5.411833e-04	ci right 6.007835e-04	k: 1426	n:2500000
FAM75C1   2500000 perm   3128 sec   (799 perm/sec)   p_kst 5.704000e-04   p_cons 9.796712e-01   p_joint 5.314000e-03

Joint ci ratio: 3.384174e-02	ci left: 5.227139e-03	ci right 5.407471e-03	k: 13345	n:2510000
Cons ci ratio: 3.563924e-04	ci left: 9.794996e-01	ci right 9.798491e-01	k: 2458984	n:2510000
KS ci ratio: 1.035958e-01	ci left: 5.405795e-04	ci right 6.000248e-04	k: 1430	n:2510000
FAM75C1   2510000 perm   3150 sec   (797 perm/sec)   p_kst 5.697211e-04   p_cons 9.796749e-01   p_joint 5.316733e-03

Joint ci ratio: 3.377475e-02	ci left: 5.227251e-03	ci right 5.407222e-03	k: 13398	n:2520000
Cons ci ratio: 3.557156e-04	ci left: 9.794964e-01	ci right 9.798453e-01	k: 2468772	n:2520000
KS ci ratio: 1.034153e-01	ci left: 5.403671e-04	ci right 5.996793e-04	k: 1435	n:2520000
FAM75C1   2520000 perm   3172 sec   (794 perm/sec)   p_kst 5.694444e-04   p_cons 9.796714e-01   p_joint 5.316667e-03

Joint ci ratio: 3.367796e-02	ci left: 5.236768e-03	ci right 5.416541e-03	k: 13475	n:2530000
Cons ci ratio: 3.551060e-04	ci left: 9.794862e-01	ci right 9.798345e-01	k: 2478542	n:2530000
KS ci ratio: 1.031642e-01	ci left: 5.409266e-04	ci right 6.001472e-04	k: 1442	n:2530000
FAM75C1   2530000 perm   3194 sec   (792 perm/sec)   p_kst 5.699605e-04   p_cons 9.796609e-01   p_joint 5.326087e-03

Joint ci ratio: 3.361193e-02	ci left: 5.236842e-03	ci right 5.416257e-03	k: 13528	n:2540000
Cons ci ratio: 3.544154e-04	ci left: 9.794855e-01	ci right 9.798331e-01	k: 2488336	n:2540000
KS ci ratio: 1.030215e-01	ci left: 5.403311e-04	ci right 5.993998e-04	k: 1446	n:2540000
FAM75C1   2540000 perm   3216 sec   (790 perm/sec)   p_kst 5.692913e-04   p_cons 9.796598e-01   p_joint 5.325984e-03

Joint ci ratio: 3.355001e-02	ci left: 5.235748e-03	ci right 5.414790e-03	k: 13578	n:2550000
Cons ci ratio: 3.537427e-04	ci left: 9.794832e-01	ci right 9.798302e-01	k: 2498126	n:2550000
KS ci ratio: 1.026321e-01	ci left: 5.424150e-04	ci right 6.014738e-04	k: 1457	n:2550000
FAM75C1   2550000 perm   3238 sec   (788 perm/sec)   p_kst 5.713725e-04   p_cons 9.796573e-01   p_joint 5.324706e-03

Joint ci ratio: 3.348596e-02	ci left: 5.235438e-03	ci right 5.414121e-03	k: 13630	n:2560000
Cons ci ratio: 3.530185e-04	ci left: 9.794873e-01	ci right 9.798335e-01	k: 2507932	n:2560000
KS ci ratio: 1.024565e-01	ci left: 5.421992e-04	ci right 6.011275e-04	k: 1462	n:2560000
FAM75C1   2560000 perm   3259 sec   (786 perm/sec)   p_kst 5.710937e-04   p_cons 9.796609e-01   p_joint 5.324219e-03

Joint ci ratio: 3.343088e-02	ci left: 5.232430e-03	ci right 5.410711e-03	k: 13675	n:2570000
Cons ci ratio: 3.523125e-04	ci left: 9.794897e-01	ci right 9.798353e-01	k: 2517734	n:2570000
KS ci ratio: 1.023517e-01	ci left: 5.412269e-04	ci right 5.999857e-04	k: 1465	n:2570000
FAM75C1   2570000 perm   3281 sec   (783 perm/sec)   p_kst 5.700389e-04   p_cons 9.796630e-01   p_joint 5.321012e-03

Joint ci ratio: 3.337607e-02	ci left: 5.229445e-03	ci right 5.407327e-03	k: 13720	n:2580000
Cons ci ratio: 3.516585e-04	ci left: 9.794867e-01	ci right 9.798316e-01	k: 2527522	n:2580000
KS ci ratio: 1.021429e-01	ci left: 5.413952e-04	ci right 6.000452e-04	k: 1471	n:2580000
FAM75C1   2580000 perm   3303 sec   (781 perm/sec)   p_kst 5.701550e-04   p_cons 9.796597e-01   p_joint 5.317829e-03

Joint ci ratio: 3.331301e-02	ci left: 5.229164e-03	ci right 5.406693e-03	k: 13772	n:2590000
Cons ci ratio: 3.509436e-04	ci left: 9.794911e-01	ci right 9.798353e-01	k: 2537329	n:2590000
KS ci ratio: 1.020044e-01	ci left: 5.408099e-04	ci right 5.993123e-04	k: 1475	n:2590000
FAM75C1   2590000 perm   3325 sec   (779 perm/sec)   p_kst 5.694981e-04   p_cons 9.796637e-01   p_joint 5.317375e-03

Joint ci ratio: 3.323943e-02	ci left: 5.232319e-03	ci right 5.409555e-03	k: 13833	n:2600000
Cons ci ratio: 3.503074e-04	ci left: 9.794869e-01	ci right 9.798305e-01	k: 2547114	n:2600000
KS ci ratio: 1.019355e-01	ci left: 5.394794e-04	ci right 5.977961e-04	k: 1477	n:2600000
FAM75C1   2600000 perm   3348 sec   (777 perm/sec)   p_kst 5.680769e-04   p_cons 9.796592e-01   p_joint 5.320385e-03

Joint ci ratio: 3.317715e-02	ci left: 5.232029e-03	ci right 5.408918e-03	k: 13885	n:2610000
Cons ci ratio: 3.496612e-04	ci left: 9.794843e-01	ci right 9.798273e-01	k: 2556903	n:2610000
KS ci ratio: 1.017635e-01	ci left: 5.392794e-04	ci right 5.974702e-04	k: 1482	n:2610000
FAM75C1   2610000 perm   3370 sec   (775 perm/sec)   p_kst 5.678161e-04   p_cons 9.796563e-01   p_joint 5.319923e-03

Joint ci ratio: 3.309492e-02	ci left: 5.238178e-03	ci right 5.414827e-03	k: 13954	n:2620000
Cons ci ratio: 3.489550e-04	ci left: 9.794890e-01	ci right 9.798313e-01	k: 2566711	n:2620000
KS ci ratio: 1.014901e-01	ci left: 5.401969e-04	ci right 5.983208e-04	k: 1490	n:2620000
FAM75C1   2620000 perm   3392 sec   (772 perm/sec)   p_kst 5.687023e-04   p_cons 9.796607e-01   p_joint 5.325954e-03

Joint ci ratio: 3.303581e-02	ci left: 5.237115e-03	ci right 5.413407e-03	k: 14004	n:2630000
Cons ci ratio: 3.482863e-04	ci left: 9.794899e-01	ci right 9.798315e-01	k: 2576509	n:2630000
KS ci ratio: 1.011177e-01	ci left: 5.422195e-04	ci right 6.003342e-04	k: 1501	n:2630000
FAM75C1   2630000 perm   3414 sec   (770 perm/sec)   p_kst 5.707224e-04   p_cons 9.796612e-01   p_joint 5.324715e-03

Joint ci ratio: 3.296995e-02	ci left: 5.238315e-03	ci right 5.414288e-03	k: 14060	n:2640000
Cons ci ratio: 3.476909e-04	ci left: 9.794828e-01	ci right 9.798238e-01	k: 2586286	n:2640000
KS ci ratio: 1.009498e-01	ci left: 5.420117e-04	ci right 6.000020e-04	k: 1506	n:2640000
FAM75C1   2640000 perm   3436 sec   (768 perm/sec)   p_kst 5.704545e-04   p_cons 9.796538e-01   p_joint 5.325758e-03

Joint ci ratio: 3.290916e-02	ci left: 5.238008e-03	ci right 5.413641e-03	k: 14112	n:2650000
Cons ci ratio: 3.471017e-04	ci left: 9.794753e-01	ci right 9.798157e-01	k: 2596062	n:2650000
KS ci ratio: 1.006828e-01	ci left: 5.429091e-04	ci right 6.008328e-04	k: 1514	n:2650000
FAM75C1   2650000 perm   3458 sec   (766 perm/sec)   p_kst 5.713208e-04   p_cons 9.796460e-01   p_joint 5.325283e-03

Joint ci ratio: 3.285454e-02	ci left: 5.235840e-03	ci right 5.411104e-03	k: 14159	n:2660000
Cons ci ratio: 3.464436e-04	ci left: 9.794762e-01	ci right 9.798160e-01	k: 2605860	n:2660000
KS ci ratio: 1.005834e-01	ci left: 5.419675e-04	ci right 5.997302e-04	k: 1517	n:2660000
FAM75C1   2660000 perm   3487 sec   (763 perm/sec)   p_kst 5.703008e-04   p_cons 9.796466e-01   p_joint 5.322932e-03

Joint ci ratio: 3.278974e-02	ci left: 5.237032e-03	ci right 5.411983e-03	k: 14215	n:2670000
Cons ci ratio: 3.457730e-04	ci left: 9.794790e-01	ci right 9.798181e-01	k: 2615663	n:2670000
KS ci ratio: 1.005172e-01	ci left: 5.406679e-04	ci right 5.982520e-04	k: 1519	n:2670000
FAM75C1   2670000 perm   3510 sec   (761 perm/sec)   p_kst 5.689139e-04   p_cons 9.796491e-01   p_joint 5.323970e-03

Joint ci ratio: 3.271842e-02	ci left: 5.240436e-03	ci right 5.415113e-03	k: 14277	n:2680000
Cons ci ratio: 3.451450e-04	ci left: 9.794773e-01	ci right 9.798157e-01	k: 2625454	n:2680000
KS ci ratio: 1.004182e-01	ci left: 5.397418e-04	ci right 5.971672e-04	k: 1522	n:2680000
FAM75C1   2680000 perm   3533 sec   (759 perm/sec)   p_kst 5.679104e-04   p_cons 9.796470e-01   p_joint 5.327239e-03

Joint ci ratio: 3.266359e-02	ci left: 5.238653e-03	ci right 5.412972e-03	k: 14325	n:2690000
Cons ci ratio: 3.444755e-04	ci left: 9.794808e-01	ci right 9.798186e-01	k: 2635259	n:2690000
KS ci ratio: 1.001228e-01	ci left: 5.409971e-04	ci right 5.983768e-04	k: 1531	n:2690000
FAM75C1   2690000 perm   3556 sec   (756 perm/sec)   p_kst 5.691450e-04   p_cons 9.796502e-01   p_joint 5.325279e-03

Joint ci ratio: 3.260676e-02	ci left: 5.237618e-03	ci right 5.411594e-03	k: 14375	n:2700000
Cons ci ratio: 3.437778e-04	ci left: 9.794879e-01	ci right 9.798251e-01	k: 2645074	n:2700000
KS ci ratio: 9.999236e-02	ci left: 5.404378e-04	ci right 5.976792e-04	k: 1535	n:2700000
FAM75C1   2700000 perm   3580 sec   (754 perm/sec)   p_kst 5.685185e-04   p_cons 9.796570e-01   p_joint 5.324074e-03

Outputting figure to mutsig2_images.part000000000062/FAM75C1.2_3583_2700000_0.00056852_0.97966_0.0053241.png
                gene_name: FAM75C1
               theta_stop: 0.100 
                    nperm: 2700000 
                     p_ks: 0.00057 
        ci_ks_bounds_left: 0.00054 
       ci_ks_bounds_right: 0.00060 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.0053 
     ci_joint_bounds_left: 0.0052 
    ci_joint_bounds_right: 0.0054 

Current progress: 60 percent done.
FAM86A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.220289e-01	ci left: 1.224928e-02	ci right 1.703957e-02	k: 145	n:10000
Cons ci ratio: 6.233328e-02	ci left: 2.744825e-01	ci right 2.922438e-01	k: 2833	n:10000
KS ci ratio: 3.556745e-01	ci left: 9.867770e-03	ci right 1.422343e-02	k: 119	n:10000
FAM86A   10000 perm   2 sec   (6455 perm/sec)   p_kst 1.190000e-02   p_cons 2.833000e-01   p_joint 1.450000e-02

Joint ci ratio: 2.730449e-01	ci left: 8.807415e-03	ci right 1.163770e-02	k: 203	n:20000
Cons ci ratio: 4.420709e-02	ci left: 2.759198e-01	ci right 2.884436e-01	k: 5643	n:20000
KS ci ratio: 2.499297e-01	ci left: 1.063101e-02	ci right 1.371326e-02	k: 242	n:20000
FAM86A   20000 perm   3 sec   (5741 perm/sec)   p_kst 1.210000e-02   p_cons 2.821500e-01   p_joint 1.015000e-02

Joint ci ratio: 2.229420e-01	ci left: 9.062469e-03	ci right 1.136720e-02	k: 305	n:30000
Cons ci ratio: 3.614556e-02	ci left: 2.765150e-01	ci right 2.867273e-01	k: 8448	n:30000
KS ci ratio: 2.098253e-01	ci left: 1.029273e-02	ci right 1.273658e-02	k: 344	n:30000
FAM86A   30000 perm   5 sec   (5467 perm/sec)   p_kst 1.146667e-02   p_cons 2.816000e-01   p_joint 1.016667e-02

Joint ci ratio: 2.059566e-01	ci left: 8.050337e-03	ci right 9.921990e-03	k: 358	n:40000
Cons ci ratio: 3.139868e-02	ci left: 2.759767e-01	ci right 2.848052e-01	k: 11215	n:40000
KS ci ratio: 1.833343e-01	ci left: 1.026340e-02	ci right 1.235845e-02	k: 451	n:40000
FAM86A   40000 perm   8 sec   (5277 perm/sec)   p_kst 1.127500e-02   p_cons 2.803750e-01   p_joint 8.950000e-03

Joint ci ratio: 8.366265e-02	ci left: 4.029762e-02	ci right 4.383579e-02	k: 2102	n:50000
Cons ci ratio: 2.798812e-02	ci left: 2.778197e-01	ci right 2.857257e-01	k: 14088	n:50000
KS ci ratio: 1.635410e-01	ci left: 1.043036e-02	ci right 1.230702e-02	k: 567	n:50000
FAM86A   50000 perm   10 sec   (5061 perm/sec)   p_kst 1.134000e-02   p_cons 2.817600e-01   p_joint 4.204000e-02

Joint ci ratio: 7.021335e-02	ci left: 4.764677e-02	ci right 5.113031e-02	k: 2962	n:60000
Cons ci ratio: 2.555776e-02	ci left: 2.780366e-01	ci right 2.852512e-01	k: 16898	n:60000
KS ci ratio: 1.469757e-01	ci left: 1.085493e-02	ci right 1.259278e-02	k: 702	n:60000
FAM86A   60000 perm   12 sec   (4947 perm/sec)   p_kst 1.170000e-02   p_cons 2.816333e-01   p_joint 4.936667e-02

Joint ci ratio: 4.927016e-02	ci left: 8.088169e-02	ci right 8.498153e-02	k: 5804	n:70000
Cons ci ratio: 2.281198e-02	ci left: 2.932889e-01	ci right 3.000708e-01	k: 20767	n:70000
KS ci ratio: 1.355862e-01	ci left: 1.099939e-02	ci right 1.261289e-02	k: 825	n:70000
FAM86A   70000 perm   14 sec   (4859 perm/sec)   p_kst 1.178571e-02   p_cons 2.966714e-01   p_joint 8.291429e-02

Joint ci ratio: 4.654974e-02	ci left: 7.952645e-02	ci right 8.332897e-02	k: 6513	n:80000
Cons ci ratio: 2.129709e-02	ci left: 2.943208e-01	ci right 3.006689e-01	k: 23799	n:80000
KS ci ratio: 1.272392e-01	ci left: 1.097846e-02	ci right 1.248226e-02	k: 937	n:80000
FAM86A   80000 perm   17 sec   (4776 perm/sec)   p_kst 1.171250e-02   p_cons 2.974875e-01   p_joint 8.141250e-02

Joint ci ratio: 3.956722e-02	ci left: 9.638437e-02	ci right 1.002860e-01	k: 8849	n:90000
Cons ci ratio: 2.009886e-02	ci left: 2.940933e-01	ci right 3.000753e-01	k: 26737	n:90000
KS ci ratio: 1.199767e-01	ci left: 1.101847e-02	ci right 1.243549e-02	k: 1054	n:90000
FAM86A   90000 perm   19 sec   (4658 perm/sec)   p_kst 1.171111e-02   p_cons 2.970778e-01   p_joint 9.832222e-02

Joint ci ratio: 3.087232e-02	ci left: 1.366924e-01	ci right 1.409885e-01	k: 13883	n:100000
Cons ci ratio: 1.905417e-02	ci left: 2.945378e-01	ci right 3.002139e-01	k: 29737	n:100000
KS ci ratio: 1.128126e-01	ci left: 1.125655e-02	ci right 1.261198e-02	k: 1192	n:100000
FAM86A   100000 perm   22 sec   (4583 perm/sec)   p_kst 1.192000e-02   p_cons 2.973700e-01   p_joint 1.388300e-01

Joint ci ratio: 3.244382e-02	ci left: 1.152596e-01	ci right 1.190697e-01	k: 12887	n:110000
Cons ci ratio: 1.814604e-02	ci left: 2.951619e-01	ci right 3.005760e-01	k: 32765	n:110000
KS ci ratio: 1.077414e-01	ci left: 1.124985e-02	ci right 1.253972e-02	k: 1307	n:110000
FAM86A   110000 perm   25 sec   (4450 perm/sec)   p_kst 1.188182e-02   p_cons 2.978636e-01   p_joint 1.171545e-01

Joint ci ratio: 3.451168e-02	ci left: 9.539723e-02	ci right 9.875560e-02	k: 11648	n:120000
Cons ci ratio: 1.736304e-02	ci left: 2.955293e-01	ci right 3.007138e-01	k: 35774	n:120000
KS ci ratio: 1.032612e-01	ci left: 1.125352e-02	ci right 1.248690e-02	k: 1423	n:120000
FAM86A   120000 perm   28 sec   (4337 perm/sec)   p_kst 1.185833e-02   p_cons 2.981167e-01   p_joint 9.706667e-02

Joint ci ratio: 3.311963e-02	ci left: 9.566357e-02	ci right 9.889288e-02	k: 12645	n:130000
Cons ci ratio: 1.666265e-02	ci left: 2.961129e-01	ci right 3.010961e-01	k: 38818	n:130000
KS ci ratio: 9.919932e-02	ci left: 1.128009e-02	ci right 1.246491e-02	k: 1542	n:130000
FAM86A   130000 perm   30 sec   (4276 perm/sec)   p_kst 1.186154e-02   p_cons 2.986000e-01   p_joint 9.726923e-02

Outputting figure to mutsig2_images.part000000000062/FAM86A.2_1025_130000_0.011862_0.2986_0.097269.png
                gene_name: FAM86A
               theta_stop: 0.099 
                    nperm: 130000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.097 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.099 

Current progress: 80 percent done.
FANCD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.529567e-01	ci left: 3.627180e-03	ci right 6.472945e-03	k: 49	n:10000
Cons ci ratio: 2.019297e-02	ci left: 7.821871e-01	ci right 7.982435e-01	k: 7903	n:10000
KS ci ratio: 1.481028e+00	ci left: 2.202202e-04	ci right 1.305486e-03	k: 6	n:10000
FANCD2   10000 perm   2 sec   (5177 perm/sec)   p_kst 6.000000e-04   p_cons 7.903000e-01   p_joint 4.900000e-03

Joint ci ratio: 7.273797e-01	ci left: 9.304852e-04	ci right 2.022759e-03	k: 28	n:20000
Cons ci ratio: 1.427841e-02	ci left: 7.845911e-01	ci right 7.959244e-01	k: 15806	n:20000
KS ci ratio: 1.306340e+00	ci left: 1.727069e-04	ci right 7.880065e-04	k: 8	n:20000
FANCD2   20000 perm   4 sec   (4654 perm/sec)   p_kst 4.000000e-04   p_cons 7.903000e-01   p_joint 1.400000e-03

Joint ci ratio: 4.376773e-01	ci left: 2.085372e-03	ci right 3.280854e-03	k: 79	n:30000
Cons ci ratio: 1.163829e-02	ci left: 7.862199e-01	ci right 7.954570e-01	k: 23726	n:30000
KS ci ratio: 1.131361e+00	ci left: 1.830524e-04	ci right 6.559730e-04	k: 11	n:30000
FANCD2   30000 perm   7 sec   (4379 perm/sec)   p_kst 3.666667e-04   p_cons 7.908667e-01   p_joint 2.633333e-03

Joint ci ratio: 3.895570e-01	ci left: 2.034549e-03	ci right 3.039847e-03	k: 100	n:40000
Cons ci ratio: 1.013892e-02	ci left: 7.848674e-01	ci right 7.928906e-01	k: 31556	n:40000
KS ci ratio: 1.011937e+00	ci left: 1.913610e-04	ci right 5.871709e-04	k: 14	n:40000
FANCD2   40000 perm   9 sec   (4261 perm/sec)   p_kst 3.500000e-04   p_cons 7.889000e-01   p_joint 2.500000e-03

Joint ci ratio: 3.589144e-01	ci left: 1.953812e-03	ci right 2.825571e-03	k: 118	n:50000
Cons ci ratio: 9.090836e-03	ci left: 7.844713e-01	ci right 7.916553e-01	k: 39404	n:50000
KS ci ratio: 8.763546e-01	ci left: 2.287998e-04	ci right 5.933537e-04	k: 19	n:50000
FANCD2   50000 perm   12 sec   (4146 perm/sec)   p_kst 3.800000e-04   p_cons 7.880800e-01   p_joint 2.360000e-03

Joint ci ratio: 3.357533e-01	ci left: 1.886806e-03	ci right 2.662597e-03	k: 135	n:60000
Cons ci ratio: 8.302812e-03	ci left: 7.846236e-01	ci right 7.911819e-01	k: 47275	n:60000
KS ci ratio: 8.355866e-01	ci left: 2.166682e-04	ci right 5.349627e-04	k: 21	n:60000
FANCD2   60000 perm   15 sec   (4071 perm/sec)   p_kst 3.500000e-04   p_cons 7.879167e-01   p_joint 2.250000e-03

Joint ci ratio: 3.274695e-01	ci left: 1.708910e-03	ci right 2.390568e-03	k: 142	n:70000
Cons ci ratio: 7.672173e-03	ci left: 7.855132e-01	ci right 7.915772e-01	k: 55199	n:70000
KS ci ratio: 7.406569e-01	ci left: 2.542030e-04	ci right 5.611448e-04	k: 27	n:70000
FANCD2   70000 perm   18 sec   (3811 perm/sec)   p_kst 3.857143e-04   p_cons 7.885571e-01   p_joint 2.028571e-03

Joint ci ratio: 2.553352e-01	ci left: 2.562654e-03	ci right 3.324102e-03	k: 234	n:80000
Cons ci ratio: 7.167934e-03	ci left: 7.861182e-01	ci right 7.917858e-01	k: 63117	n:80000
KS ci ratio: 7.039120e-01	ci left: 2.530248e-04	ci right 5.352929e-04	k: 30	n:80000
FANCD2   80000 perm   21 sec   (3756 perm/sec)   p_kst 3.750000e-04   p_cons 7.889625e-01   p_joint 2.925000e-03

Joint ci ratio: 2.587097e-01	ci left: 2.215490e-03	ci right 2.883884e-03	k: 228	n:90000
Cons ci ratio: 6.750465e-03	ci left: 7.866543e-01	ci right 7.919937e-01	k: 71040	n:90000
KS ci ratio: 6.721437e-01	ci left: 2.524095e-04	ci right 5.148981e-04	k: 33	n:90000
FANCD2   90000 perm   24 sec   (3721 perm/sec)   p_kst 3.666667e-04   p_cons 7.893333e-01   p_joint 2.533333e-03

Joint ci ratio: 2.082709e-01	ci left: 3.162390e-03	ci right 3.906864e-03	k: 352	n:100000
Cons ci ratio: 6.407581e-03	ci left: 7.866084e-01	ci right 7.916748e-01	k: 78915	n:100000
KS ci ratio: 6.443216e-01	ci left: 2.521519e-04	ci right 4.983573e-04	k: 36	n:100000
FANCD2   100000 perm   27 sec   (3685 perm/sec)   p_kst 3.600000e-04   p_cons 7.891500e-01   p_joint 3.520000e-03

Joint ci ratio: 2.004787e-01	ci left: 3.116414e-03	ci right 3.819257e-03	k: 380	n:110000
Cons ci ratio: 6.104297e-03	ci left: 7.870057e-01	ci right 7.918336e-01	k: 86837	n:110000
KS ci ratio: 6.196909e-01	ci left: 2.521282e-04	ci right 4.846438e-04	k: 39	n:110000
FANCD2   110000 perm   30 sec   (3647 perm/sec)   p_kst 3.545455e-04   p_cons 7.894273e-01   p_joint 3.454545e-03

Joint ci ratio: 1.911691e-01	ci left: 3.157867e-03	ci right 3.833145e-03	k: 418	n:120000
Cons ci ratio: 5.849732e-03	ci left: 7.868058e-01	ci right 7.914302e-01	k: 94695	n:120000
KS ci ratio: 5.976848e-01	ci left: 2.522605e-04	ci right 4.730692e-04	k: 42	n:120000
FANCD2   120000 perm   33 sec   (3609 perm/sec)   p_kst 3.500000e-04   p_cons 7.891250e-01   p_joint 3.483333e-03

Joint ci ratio: 1.930527e-01	ci left: 2.856332e-03	ci right 3.473851e-03	k: 410	n:130000
Cons ci ratio: 5.629234e-03	ci left: 7.863625e-01	ci right 7.908092e-01	k: 102517	n:130000
KS ci ratio: 5.842557e-01	ci left: 2.459371e-04	ci right 4.543425e-04	k: 44	n:130000
FANCD2   130000 perm   36 sec   (3569 perm/sec)   p_kst 3.384615e-04   p_cons 7.885923e-01   p_joint 3.153846e-03

Joint ci ratio: 1.857391e-01	ci left: 2.876852e-03	ci right 3.472591e-03	k: 443	n:140000
Cons ci ratio: 5.428406e-03	ci left: 7.862008e-01	ci right 7.904873e-01	k: 110369	n:140000
KS ci ratio: 5.716927e-01	ci left: 2.405653e-04	ci right 4.382442e-04	k: 46	n:140000
FANCD2   140000 perm   40 sec   (3517 perm/sec)   p_kst 3.285714e-04   p_cons 7.883500e-01   p_joint 3.164286e-03

Joint ci ratio: 2.242295e-01	ci left: 1.805418e-03	ci right 2.267502e-03	k: 304	n:150000
Cons ci ratio: 5.249524e-03	ci left: 7.859428e-01	ci right 7.900861e-01	k: 118203	n:150000
KS ci ratio: 5.488146e-01	ci left: 2.474162e-04	ci right 4.394351e-04	k: 50	n:150000
FANCD2   150000 perm   43 sec   (3476 perm/sec)   p_kst 3.333333e-04   p_cons 7.880200e-01   p_joint 2.026667e-03

Joint ci ratio: 2.457666e-01	ci left: 1.392518e-03	ci right 1.788394e-03	k: 253	n:160000
Cons ci ratio: 5.077143e-03	ci left: 7.863841e-01	ci right 7.903930e-01	k: 126143	n:160000
KS ci ratio: 5.488206e-01	ci left: 2.319521e-04	ci right 4.119718e-04	k: 50	n:160000
FANCD2   160000 perm   47 sec   (3421 perm/sec)   p_kst 3.125000e-04   p_cons 7.883938e-01   p_joint 1.581250e-03

Joint ci ratio: 3.397731e-01	ci left: 6.497058e-04	ci right 9.207286e-04	k: 132	n:170000
Cons ci ratio: 4.930148e-03	ci left: 7.861319e-01	ci right 7.900230e-01	k: 133974	n:170000
KS ci ratio: 5.383679e-01	ci left: 2.284557e-04	ci right 4.011049e-04	k: 52	n:170000
FANCD2   170000 perm   50 sec   (3384 perm/sec)   p_kst 3.058824e-04   p_cons 7.880824e-01   p_joint 7.764706e-04

Joint ci ratio: 3.299933e-01	ci left: 6.543195e-04	ci right 9.177440e-04	k: 140	n:180000
Cons ci ratio: 4.791866e-03	ci left: 7.861434e-01	ci right 7.899251e-01	k: 141847	n:180000
KS ci ratio: 5.191330e-01	ci left: 2.350183e-04	ci right 4.039849e-04	k: 56	n:180000
FANCD2   180000 perm   54 sec   (3347 perm/sec)   p_kst 3.111111e-04   p_cons 7.880389e-01   p_joint 7.777778e-04

Joint ci ratio: 3.157537e-01	ci left: 6.827620e-04	ci right 9.433842e-04	k: 153	n:190000
Cons ci ratio: 4.662471e-03	ci left: 7.863083e-01	ci right 7.899882e-01	k: 149749	n:190000
KS ci ratio: 4.937904e-01	ci left: 2.501933e-04	ci right 4.183029e-04	k: 62	n:190000
FANCD2   190000 perm   57 sec   (3308 perm/sec)   p_kst 3.263158e-04   p_cons 7.881526e-01   p_joint 8.052632e-04

Joint ci ratio: 1.695672e-01	ci left: 2.439002e-03	ci right 2.895602e-03	k: 532	n:200000
Cons ci ratio: 4.548192e-03	ci left: 7.860767e-01	ci right 7.896650e-01	k: 157575	n:200000
KS ci ratio: 4.788228e-01	ci left: 2.552309e-04	ci right 4.198221e-04	k: 66	n:200000
FANCD2   200000 perm   62 sec   (3248 perm/sec)   p_kst 3.300000e-04   p_cons 7.878750e-01   p_joint 2.660000e-03

Joint ci ratio: 1.881884e-01	ci left: 1.867878e-03	ci right 2.260355e-03	k: 432	n:210000
Cons ci ratio: 4.438312e-03	ci left: 7.861405e-01	ci right 7.896421e-01	k: 165458	n:210000
KS ci ratio: 4.651387e-01	ci left: 2.598586e-04	ci right 4.211281e-04	k: 70	n:210000
FANCD2   210000 perm   66 sec   (3200 perm/sec)   p_kst 3.333333e-04   p_cons 7.878952e-01   p_joint 2.057143e-03

Joint ci ratio: 1.948477e-01	ci left: 1.657457e-03	ci right 2.019507e-03	k: 403	n:220000
Cons ci ratio: 4.337386e-03	ci left: 7.860945e-01	ci right 7.895160e-01	k: 173318	n:220000
KS ci ratio: 4.618998e-01	ci left: 2.520610e-04	ci right 4.070594e-04	k: 71	n:220000
FANCD2   220000 perm   70 sec   (3163 perm/sec)   p_kst 3.227273e-04   p_cons 7.878091e-01   p_joint 1.831818e-03

Joint ci ratio: 1.908738e-01	ci left: 1.655738e-03	ci right 2.009180e-03	k: 420	n:230000
Cons ci ratio: 4.240893e-03	ci left: 7.862235e-01	ci right 7.895692e-01	k: 181217	n:230000
KS ci ratio: 4.587275e-01	ci left: 2.449451e-04	ci right 3.942104e-04	k: 72	n:230000
FANCD2   230000 perm   74 sec   (3124 perm/sec)   p_kst 3.130435e-04   p_cons 7.879000e-01   p_joint 1.826087e-03

Joint ci ratio: 1.862832e-01	ci left: 1.670120e-03	ci right 2.017088e-03	k: 441	n:240000
Cons ci ratio: 4.149686e-03	ci left: 7.864136e-01	ci right 7.896878e-01	k: 189133	n:240000
KS ci ratio: 4.466529e-01	ci left: 2.495052e-04	ci right 3.963398e-04	k: 76	n:240000
FANCD2   240000 perm   78 sec   (3067 perm/sec)   p_kst 3.166667e-04   p_cons 7.880542e-01   p_joint 1.837500e-03

Joint ci ratio: 1.754840e-01	ci left: 1.817193e-03	ci right 2.170512e-03	k: 497	n:250000
Cons ci ratio: 4.065190e-03	ci left: 7.865008e-01	ci right 7.897085e-01	k: 197027	n:250000
KS ci ratio: 4.409639e-01	ci left: 2.466306e-04	ci right 3.893751e-04	k: 78	n:250000
FANCD2   250000 perm   82 sec   (3036 perm/sec)   p_kst 3.120000e-04   p_cons 7.881080e-01   p_joint 1.988000e-03

Joint ci ratio: 1.722296e-01	ci left: 1.817198e-03	ci right 2.163285e-03	k: 516	n:260000
Cons ci ratio: 3.986572e-03	ci left: 7.865048e-01	ci right 7.896503e-01	k: 204901	n:260000
KS ci ratio: 4.354869e-01	ci left: 2.439882e-04	ci right 3.829353e-04	k: 80	n:260000
FANCD2   260000 perm   87 sec   (3005 perm/sec)   p_kst 3.076923e-04   p_cons 7.880808e-01   p_joint 1.984615e-03

Joint ci ratio: 1.677445e-01	ci left: 1.849189e-03	ci right 2.191271e-03	k: 544	n:270000
Cons ci ratio: 3.912475e-03	ci left: 7.864979e-01	ci right 7.895848e-01	k: 212772	n:270000
KS ci ratio: 4.251160e-01	ci left: 2.481618e-04	ci right 3.851625e-04	k: 84	n:270000
FANCD2   270000 perm   91 sec   (2959 perm/sec)   p_kst 3.111111e-04   p_cons 7.880444e-01   p_joint 2.014815e-03

Joint ci ratio: 1.653364e-01	ci left: 1.837907e-03	ci right 2.172535e-03	k: 560	n:280000
Cons ci ratio: 3.843471e-03	ci left: 7.863954e-01	ci right 7.894272e-01	k: 220616	n:280000
KS ci ratio: 4.178070e-01	ci left: 2.488767e-04	ci right 3.832510e-04	k: 87	n:280000
FANCD2   280000 perm   96 sec   (2915 perm/sec)   p_kst 3.107143e-04   p_cons 7.879143e-01   p_joint 2.000000e-03

Joint ci ratio: 1.628877e-01	ci left: 1.830743e-03	ci right 2.158647e-03	k: 577	n:290000
Cons ci ratio: 3.775187e-03	ci left: 7.865493e-01	ci right 7.895277e-01	k: 228532	n:290000
KS ci ratio: 4.108625e-01	ci left: 2.495610e-04	ci right 3.814529e-04	k: 90	n:290000
FANCD2   290000 perm   101 sec   (2883 perm/sec)   p_kst 3.103448e-04   p_cons 7.880414e-01   p_joint 1.989655e-03

Joint ci ratio: 1.604096e-01	ci left: 1.827291e-03	ci right 2.149118e-03	k: 595	n:300000
Cons ci ratio: 3.713601e-03	ci left: 7.864060e-01	ci right 7.893351e-01	k: 236362	n:300000
KS ci ratio: 4.000186e-01	ci left: 2.562096e-04	ci right 3.870949e-04	k: 95	n:300000
FANCD2   300000 perm   105 sec   (2848 perm/sec)   p_kst 3.166667e-04   p_cons 7.878733e-01   p_joint 1.983333e-03

Joint ci ratio: 1.581704e-01	ci left: 1.820999e-03	ci right 2.136815e-03	k: 612	n:310000
Cons ci ratio: 3.654331e-03	ci left: 7.863273e-01	ci right 7.892092e-01	k: 244209	n:310000
KS ci ratio: 3.939113e-01	ci left: 2.566560e-04	ci right 3.852467e-04	k: 98	n:310000
FANCD2   310000 perm   110 sec   (2820 perm/sec)   p_kst 3.161290e-04   p_cons 7.877710e-01   p_joint 1.974194e-03

Joint ci ratio: 1.551611e-01	ci left: 1.836153e-03	ci right 2.147976e-03	k: 636	n:320000
Cons ci ratio: 3.596030e-03	ci left: 7.864199e-01	ci right 7.892561e-01	k: 252109	n:320000
KS ci ratio: 3.788967e-01	ci left: 2.712081e-04	ci right 4.006234e-04	k: 106	n:320000
FANCD2   320000 perm   115 sec   (2793 perm/sec)   p_kst 3.312500e-04   p_cons 7.878406e-01   p_joint 1.987500e-03

Joint ci ratio: 1.525487e-01	ci left: 1.844613e-03	ci right 2.152116e-03	k: 658	n:330000
Cons ci ratio: 3.540464e-03	ci left: 7.865042e-01	ci right 7.892968e-01	k: 260008	n:330000
KS ci ratio: 3.703418e-01	ci left: 2.767149e-04	ci right 4.050547e-04	k: 111	n:330000
FANCD2   330000 perm   119 sec   (2764 perm/sec)   p_kst 3.363636e-04   p_cons 7.879030e-01   p_joint 1.993939e-03

Joint ci ratio: 1.509551e-01	ci left: 1.829972e-03	ci right 2.131559e-03	k: 672	n:340000
Cons ci ratio: 3.490651e-03	ci left: 7.862714e-01	ci right 7.890237e-01	k: 267801	n:340000
KS ci ratio: 3.654795e-01	ci left: 2.765840e-04	ci right 4.027771e-04	k: 114	n:340000
FANCD2   340000 perm   124 sec   (2738 perm/sec)   p_kst 3.352941e-04   p_cons 7.876500e-01   p_joint 1.976471e-03

Joint ci ratio: 1.479078e-01	ci left: 1.854697e-03	ci right 2.153644e-03	k: 700	n:350000
Cons ci ratio: 3.440437e-03	ci left: 7.862899e-01	ci right 7.890025e-01	k: 275677	n:350000
KS ci ratio: 3.623430e-01	ci left: 2.738733e-04	ci right 3.975039e-04	k: 116	n:350000
FANCD2   350000 perm   129 sec   (2707 perm/sec)   p_kst 3.314286e-04   p_cons 7.876486e-01   p_joint 2.000000e-03

Joint ci ratio: 1.206819e-01	ci left: 2.745824e-03	ci right 3.101141e-03	k: 1051	n:360000
Cons ci ratio: 3.393288e-03	ci left: 7.862129e-01	ci right 7.888880e-01	k: 283519	n:360000
KS ci ratio: 3.577853e-01	ci left: 2.738453e-04	ci right 3.955461e-04	k: 119	n:360000
FANCD2   360000 perm   134 sec   (2679 perm/sec)   p_kst 3.305556e-04   p_cons 7.875528e-01   p_joint 2.919444e-03

Joint ci ratio: 1.188319e-01	ci left: 2.758131e-03	ci right 3.109185e-03	k: 1084	n:370000
Cons ci ratio: 3.346809e-03	ci left: 7.862623e-01	ci right 7.889008e-01	k: 291406	n:370000
KS ci ratio: 3.533953e-01	ci left: 2.738279e-04	ci right 3.936852e-04	k: 122	n:370000
FANCD2   370000 perm   140 sec   (2652 perm/sec)   p_kst 3.297297e-04   p_cons 7.875838e-01   p_joint 2.929730e-03

Joint ci ratio: 1.422385e-01	ci left: 1.852831e-03	ci right 2.139059e-03	k: 757	n:380000
Cons ci ratio: 3.302630e-03	ci left: 7.862644e-01	ci right 7.888680e-01	k: 299276	n:380000
KS ci ratio: 3.491630e-01	ci left: 2.738201e-04	ci right 3.919136e-04	k: 125	n:380000
FANCD2   380000 perm   145 sec   (2626 perm/sec)   p_kst 3.289474e-04   p_cons 7.875684e-01   p_joint 1.992105e-03

Joint ci ratio: 1.406704e-01	ci left: 1.847369e-03	ci right 2.129343e-03	k: 774	n:390000
Cons ci ratio: 3.259131e-03	ci left: 7.863720e-01	ci right 7.889416e-01	k: 307187	n:390000
KS ci ratio: 3.450792e-01	ci left: 2.738208e-04	ci right 3.902249e-04	k: 128	n:390000
FANCD2   390000 perm   150 sec   (2602 perm/sec)   p_kst 3.282051e-04   p_cons 7.876590e-01   p_joint 1.984615e-03

Joint ci ratio: 1.391530e-01	ci left: 1.842197e-03	ci right 2.120097e-03	k: 791	n:400000
Cons ci ratio: 3.217812e-03	ci left: 7.864219e-01	ci right 7.889590e-01	k: 315077	n:400000
KS ci ratio: 3.398502e-01	ci left: 2.761154e-04	ci right 3.913259e-04	k: 132	n:400000
FANCD2   400000 perm   155 sec   (2577 perm/sec)   p_kst 3.300000e-04   p_cons 7.876925e-01   p_joint 1.977500e-03

Joint ci ratio: 1.132316e-01	ci left: 2.749555e-03	ci right 3.081922e-03	k: 1194	n:410000
Cons ci ratio: 3.178975e-03	ci left: 7.863692e-01	ci right 7.888755e-01	k: 322926	n:410000
KS ci ratio: 3.373239e-01	ci left: 2.738441e-04	ci right 3.870727e-04	k: 134	n:410000
FANCD2   410000 perm   161 sec   (2553 perm/sec)   p_kst 3.268293e-04   p_cons 7.876244e-01   p_joint 2.912195e-03

Joint ci ratio: 1.358485e-01	ci left: 1.844136e-03	ci right 2.115189e-03	k: 830	n:420000
Cons ci ratio: 3.139119e-03	ci left: 7.865746e-01	ci right 7.890500e-01	k: 330882	n:420000
KS ci ratio: 3.348532e-01	ci left: 2.716841e-04	ci right 3.830191e-04	k: 136	n:420000
FANCD2   420000 perm   166 sec   (2529 perm/sec)   p_kst 3.238095e-04   p_cons 7.878143e-01   p_joint 1.976190e-03

Joint ci ratio: 1.340849e-01	ci left: 1.850685e-03	ci right 2.118887e-03	k: 852	n:430000
Cons ci ratio: 3.102212e-03	ci left: 7.866098e-01	ci right 7.890561e-01	k: 338769	n:430000
KS ci ratio: 3.324359e-01	ci left: 2.696273e-04	ci right 3.791511e-04	k: 138	n:430000
FANCD2   430000 perm   172 sec   (2507 perm/sec)   p_kst 3.209302e-04   p_cons 7.878349e-01   p_joint 1.981395e-03

Joint ci ratio: 1.328454e-01	ci left: 1.843773e-03	ci right 2.108308e-03	k: 868	n:440000
Cons ci ratio: 3.066910e-03	ci left: 7.866071e-01	ci right 7.890255e-01	k: 346640	n:440000
KS ci ratio: 3.300703e-01	ci left: 2.676668e-04	ci right 3.754563e-04	k: 140	n:440000
FANCD2   440000 perm   177 sec   (2483 perm/sec)   p_kst 3.181818e-04   p_cons 7.878182e-01   p_joint 1.972727e-03

Joint ci ratio: 1.307543e-01	ci left: 1.862972e-03	ci right 2.125728e-03	k: 896	n:450000
Cons ci ratio: 3.032787e-03	ci left: 7.866047e-01	ci right 7.889961e-01	k: 354511	n:450000
KS ci ratio: 3.277544e-01	ci left: 2.657961e-04	ci right 3.719230e-04	k: 142	n:450000
FANCD2   450000 perm   184 sec   (2440 perm/sec)   p_kst 3.155556e-04   p_cons 7.878022e-01   p_joint 1.991111e-03

Joint ci ratio: 1.297466e-01	ci left: 1.851915e-03	ci right 2.110944e-03	k: 910	n:460000
Cons ci ratio: 3.000577e-03	ci left: 7.865132e-01	ci right 7.888789e-01	k: 362341	n:460000
KS ci ratio: 3.266152e-01	ci left: 2.620132e-04	ci right 3.661897e-04	k: 143	n:460000
FANCD2   460000 perm   191 sec   (2404 perm/sec)   p_kst 3.108696e-04   p_cons 7.876978e-01   p_joint 1.978261e-03

Joint ci ratio: 1.149529e-01	ci left: 2.326175e-03	ci right 2.611928e-03	k: 1159	n:470000
Cons ci ratio: 2.968729e-03	ci left: 7.864982e-01	ci right 7.888387e-01	k: 370205	n:470000
KS ci ratio: 3.243708e-01	ci left: 2.603461e-04	ci right 3.630003e-04	k: 145	n:470000
FANCD2   470000 perm   197 sec   (2384 perm/sec)   p_kst 3.085106e-04   p_cons 7.876702e-01   p_joint 2.465957e-03

Joint ci ratio: 9.025484e-02	ci left: 3.737853e-03	ci right 4.093176e-03	k: 1878	n:480000
Cons ci ratio: 2.937326e-03	ci left: 7.865466e-01	ci right 7.888624e-01	k: 378099	n:480000
KS ci ratio: 3.210887e-01	ci left: 2.606660e-04	ci right 3.621924e-04	k: 148	n:480000
FANCD2   480000 perm   203 sec   (2361 perm/sec)   p_kst 3.083333e-04   p_cons 7.877063e-01   p_joint 3.912500e-03

Joint ci ratio: 1.271923e-01	ci left: 1.811614e-03	ci right 2.059640e-03	k: 947	n:490000
Cons ci ratio: 2.906454e-03	ci left: 7.866443e-01	ci right 7.889360e-01	k: 386018	n:490000
KS ci ratio: 3.200173e-01	ci left: 2.572228e-04	ci right 3.570053e-04	k: 149	n:490000
FANCD2   490000 perm   210 sec   (2337 perm/sec)   p_kst 3.040816e-04   p_cons 7.877918e-01   p_joint 1.932653e-03

Joint ci ratio: 1.250969e-01	ci left: 1.837364e-03	ci right 2.084464e-03	k: 979	n:500000
Cons ci ratio: 2.876209e-03	ci left: 7.867763e-01	ci right 7.890444e-01	k: 393956	n:500000
KS ci ratio: 3.168644e-01	ci left: 2.575989e-04	ci right 3.563431e-04	k: 152	n:500000
FANCD2   500000 perm   216 sec   (2316 perm/sec)   p_kst 3.040000e-04   p_cons 7.879120e-01   p_joint 1.958000e-03

Joint ci ratio: 1.234690e-01	ci left: 1.850733e-03	ci right 2.096156e-03	k: 1005	n:510000
Cons ci ratio: 2.847422e-03	ci left: 7.868403e-01	ci right 7.890859e-01	k: 401862	n:510000
KS ci ratio: 3.148138e-01	ci left: 2.561586e-04	ci right 3.535875e-04	k: 154	n:510000
FANCD2   510000 perm   222 sec   (2297 perm/sec)   p_kst 3.019608e-04   p_cons 7.879647e-01   p_joint 1.970588e-03

Joint ci ratio: 1.224391e-01	ci left: 1.846829e-03	ci right 2.089543e-03	k: 1022	n:520000
Cons ci ratio: 2.820765e-03	ci left: 7.867497e-01	ci right 7.889740e-01	k: 409689	n:520000
KS ci ratio: 3.138038e-01	ci left: 2.530038e-04	ci right 3.488621e-04	k: 155	n:520000
FANCD2   520000 perm   229 sec   (2274 perm/sec)   p_kst 2.980769e-04   p_cons 7.878635e-01   p_joint 1.965385e-03

Joint ci ratio: 1.215518e-01	ci left: 1.839421e-03	ci right 2.079283e-03	k: 1037	n:530000
Cons ci ratio: 2.794904e-03	ci left: 7.866551e-01	ci right 7.888587e-01	k: 417512	n:530000
KS ci ratio: 3.108293e-01	ci left: 2.534470e-04	ci right 3.483824e-04	k: 158	n:530000
FANCD2   530000 perm   235 sec   (2256 perm/sec)   p_kst 2.981132e-04   p_cons 7.877585e-01   p_joint 1.956604e-03

Joint ci ratio: 1.728213e-01	ci left: 8.695942e-04	ci right 1.035835e-03	k: 513	n:540000
Cons ci ratio: 2.768331e-03	ci left: 7.867348e-01	ci right 7.889176e-01	k: 425427	n:540000
KS ci ratio: 3.098570e-01	ci left: 2.504611e-04	ci right 3.439266e-04	k: 159	n:540000
FANCD2   540000 perm   241 sec   (2237 perm/sec)   p_kst 2.944444e-04   p_cons 7.878278e-01   p_joint 9.500000e-04

Joint ci ratio: 1.718219e-01	ci left: 8.642217e-04	ci right 1.028381e-03	k: 519	n:550000
Cons ci ratio: 2.742725e-03	ci left: 7.867844e-01	ci right 7.889471e-01	k: 433327	n:550000
KS ci ratio: 3.079386e-01	ci left: 2.492618e-04	ci right 3.415908e-04	k: 161	n:550000
FANCD2   550000 perm   248 sec   (2215 perm/sec)   p_kst 2.927273e-04   p_cons 7.878673e-01   p_joint 9.436364e-04

Joint ci ratio: 1.703541e-01	ci left: 8.641725e-04	ci right 1.026776e-03	k: 528	n:560000
Cons ci ratio: 2.718005e-03	ci left: 7.868090e-01	ci right 7.889523e-01	k: 441214	n:560000
KS ci ratio: 3.060555e-01	ci left: 2.481070e-04	ci right 3.393367e-04	k: 163	n:560000
FANCD2   560000 perm   255 sec   (2196 perm/sec)   p_kst 2.910714e-04   p_cons 7.878821e-01   p_joint 9.428571e-04

Joint ci ratio: 1.684538e-01	ci left: 8.691718e-04	ci right 1.030707e-03	k: 540	n:570000
Cons ci ratio: 2.694380e-03	ci left: 7.867784e-01	ci right 7.889029e-01	k: 449070	n:570000
KS ci ratio: 3.014935e-01	ci left: 2.518577e-04	ci right 3.428217e-04	k: 168	n:570000
FANCD2   570000 perm   262 sec   (2179 perm/sec)   p_kst 2.947368e-04   p_cons 7.878421e-01   p_joint 9.473684e-04

Joint ci ratio: 1.675279e-01	ci left: 8.640958e-04	ci right 1.023715e-03	k: 546	n:580000
Cons ci ratio: 2.671071e-03	ci left: 7.867852e-01	ci right 7.888912e-01	k: 456947	n:580000
KS ci ratio: 2.988526e-01	ci left: 2.522983e-04	ci right 3.424717e-04	k: 171	n:580000
FANCD2   580000 perm   268 sec   (2161 perm/sec)   p_kst 2.948276e-04   p_cons 7.878397e-01   p_joint 9.413793e-04

Joint ci ratio: 1.660172e-01	ci left: 8.656919e-04	ci right 1.024020e-03	k: 556	n:590000
Cons ci ratio: 2.647336e-03	ci left: 7.869209e-01	ci right 7.890085e-01	k: 464900	n:590000
KS ci ratio: 2.971304e-01	ci left: 2.511585e-04	ci right 3.403097e-04	k: 173	n:590000
FANCD2   590000 perm   275 sec   (2144 perm/sec)   p_kst 2.932203e-04   p_cons 7.879661e-01   p_joint 9.423729e-04

Joint ci ratio: 1.638252e-01	ci left: 8.752322e-04	ci right 1.032984e-03	k: 571	n:600000
Cons ci ratio: 2.624785e-03	ci left: 7.869803e-01	ci right 7.890503e-01	k: 472810	n:600000
KS ci ratio: 2.921355e-01	ci left: 2.562336e-04	ci right 3.453746e-04	k: 179	n:600000
FANCD2   600000 perm   282 sec   (2125 perm/sec)   p_kst 2.983333e-04   p_cons 7.880167e-01   p_joint 9.516667e-04

Joint ci ratio: 1.624116e-01	ci left: 8.766085e-04	ci right 1.033111e-03	k: 581	n:610000
Cons ci ratio: 2.602979e-03	ci left: 7.870148e-01	ci right 7.890677e-01	k: 480706	n:610000
KS ci ratio: 2.881602e-01	ci left: 2.596334e-04	ci right 3.485042e-04	k: 184	n:610000
FANCD2   610000 perm   290 sec   (2107 perm/sec)   p_kst 3.016393e-04   p_cons 7.880426e-01   p_joint 9.524590e-04

Joint ci ratio: 1.613069e-01	ci left: 8.748501e-04	ci right 1.029874e-03	k: 589	n:620000
Cons ci ratio: 2.582095e-03	ci left: 7.869982e-01	ci right 7.890346e-01	k: 488571	n:620000
KS ci ratio: 2.881609e-01	ci left: 2.554457e-04	ci right 3.428833e-04	k: 184	n:620000
FANCD2   620000 perm   297 sec   (2091 perm/sec)   p_kst 2.967742e-04   p_cons 7.880177e-01   p_joint 9.500000e-04

Joint ci ratio: 1.603588e-01	ci left: 8.716274e-04	ci right 1.025085e-03	k: 596	n:630000
Cons ci ratio: 2.561193e-03	ci left: 7.870490e-01	ci right 7.890690e-01	k: 496478	n:630000
KS ci ratio: 2.873857e-01	ci left: 2.528637e-04	ci right 3.391423e-04	k: 185	n:630000
FANCD2   630000 perm   304 sec   (2075 perm/sec)   p_kst 2.936508e-04   p_cons 7.880603e-01   p_joint 9.460317e-04

Joint ci ratio: 1.587707e-01	ci left: 8.760097e-04	ci right 1.028566e-03	k: 608	n:640000
Cons ci ratio: 2.540696e-03	ci left: 7.871108e-01	ci right 7.891147e-01	k: 504393	n:640000
KS ci ratio: 2.843443e-01	ci left: 2.547147e-04	ci right 3.405401e-04	k: 189	n:640000
FANCD2   640000 perm   311 sec   (2058 perm/sec)   p_kst 2.953125e-04   p_cons 7.881141e-01   p_joint 9.500000e-04

Joint ci ratio: 1.573558e-01	ci left: 8.787864e-04	ci right 1.030333e-03	k: 619	n:650000
Cons ci ratio: 2.520544e-03	ci left: 7.871893e-01	ci right 7.891774e-01	k: 512320	n:650000
KS ci ratio: 2.806747e-01	ci left: 2.579435e-04	ci right 3.435367e-04	k: 194	n:650000
FANCD2   650000 perm   319 sec   (2035 perm/sec)   p_kst 2.984615e-04   p_cons 7.881846e-01   p_joint 9.523077e-04

Joint ci ratio: 1.561019e-01	ci left: 8.800288e-04	ci right 1.030467e-03	k: 629	n:660000
Cons ci ratio: 2.501692e-03	ci left: 7.871546e-01	ci right 7.891277e-01	k: 520174	n:660000
KS ci ratio: 2.799582e-01	ci left: 2.554439e-04	ci right 3.399531e-04	k: 195	n:660000
FANCD2   660000 perm   328 sec   (2011 perm/sec)   p_kst 2.954545e-04   p_cons 7.881424e-01   p_joint 9.530303e-04

Joint ci ratio: 1.548775e-01	ci left: 8.812388e-04	ci right 1.030593e-03	k: 639	n:670000
Cons ci ratio: 2.365807e-03	ci left: 8.028799e-01	ci right 8.047831e-01	k: 538568	n:670000
KS ci ratio: 2.778400e-01	ci left: 2.557958e-04	ci right 3.396691e-04	k: 198	n:670000
FANCD2   670000 perm   336 sec   (1997 perm/sec)   p_kst 2.955224e-04   p_cons 8.038328e-01   p_joint 9.537313e-04

Joint ci ratio: 1.540377e-01	ci left: 8.781755e-04	ci right 1.026129e-03	k: 646	n:680000
Cons ci ratio: 2.348295e-03	ci left: 8.028939e-01	ci right 8.047830e-01	k: 546611	n:680000
KS ci ratio: 2.750888e-01	ci left: 2.575087e-04	ci right 3.409630e-04	k: 202	n:680000
FANCD2   680000 perm   344 sec   (1976 perm/sec)   p_kst 2.970588e-04   p_cons 8.038397e-01   p_joint 9.500000e-04

Joint ci ratio: 1.533287e-01	ci left: 8.738094e-04	ci right 1.020288e-03	k: 652	n:690000
Cons ci ratio: 2.331274e-03	ci left: 8.028929e-01	ci right 8.047683e-01	k: 554644	n:690000
KS ci ratio: 2.737438e-01	ci left: 2.564758e-04	ci right 3.391191e-04	k: 204	n:690000
FANCD2   690000 perm   352 sec   (1959 perm/sec)   p_kst 2.956522e-04   p_cons 8.038319e-01   p_joint 9.449275e-04

Joint ci ratio: 1.523982e-01	ci left: 8.723178e-04	ci right 1.017577e-03	k: 660	n:700000
Cons ci ratio: 2.314136e-03	ci left: 8.029579e-01	ci right 8.048196e-01	k: 562723	n:700000
KS ci ratio: 2.724184e-01	ci left: 2.554734e-04	ci right 3.373268e-04	k: 206	n:700000
FANCD2   700000 perm   360 sec   (1944 perm/sec)   p_kst 2.942857e-04   p_cons 8.038900e-01   p_joint 9.428571e-04

Joint ci ratio: 1.517116e-01	ci left: 8.681607e-04	ci right 1.012018e-03	k: 666	n:710000
Cons ci ratio: 2.298324e-03	ci left: 8.028899e-01	ci right 8.047387e-01	k: 570709	n:710000
KS ci ratio: 2.717631e-01	ci left: 2.531875e-04	ci right 3.340801e-04	k: 207	n:710000
FANCD2   710000 perm   368 sec   (1929 perm/sec)   p_kst 2.915493e-04   p_cons 8.038155e-01   p_joint 9.380282e-04

Joint ci ratio: 1.510342e-01	ci left: 8.641204e-04	ci right 1.006611e-03	k: 672	n:720000
Cons ci ratio: 2.283214e-03	ci left: 8.027709e-01	ci right 8.046072e-01	k: 578657	n:720000
KS ci ratio: 2.691869e-01	ci left: 2.548499e-04	ci right 3.353714e-04	k: 211	n:720000
FANCD2   720000 perm   377 sec   (1912 perm/sec)   p_kst 2.930556e-04   p_cons 8.036903e-01   p_joint 9.333333e-04

Joint ci ratio: 1.497051e-01	ci left: 8.681032e-04	ci right 1.009878e-03	k: 684	n:730000
Cons ci ratio: 2.268170e-03	ci left: 8.026868e-01	ci right 8.045108e-01	k: 586628	n:730000
KS ci ratio: 2.679262e-01	ci left: 2.539140e-04	ci right 3.337011e-04	k: 213	n:730000
FANCD2   730000 perm   385 sec   (1898 perm/sec)   p_kst 2.917808e-04   p_cons 8.036000e-01   p_joint 9.369863e-04

Joint ci ratio: 1.487313e-01	ci left: 8.680801e-04	ci right 1.008847e-03	k: 693	n:740000
Cons ci ratio: 2.253641e-03	ci left: 8.025739e-01	ci right 8.043859e-01	k: 594576	n:740000
KS ci ratio: 2.654566e-01	ci left: 2.555268e-04	ci right 3.349575e-04	k: 217	n:740000
FANCD2   740000 perm   393 sec   (1885 perm/sec)   p_kst 2.932432e-04   p_cons 8.034811e-01   p_joint 9.364865e-04

Joint ci ratio: 1.472530e-01	ci left: 8.744814e-04	ci right 1.014753e-03	k: 707	n:750000
Cons ci ratio: 2.238036e-03	ci left: 8.026550e-01	ci right 8.044547e-01	k: 602667	n:750000
KS ci ratio: 2.642474e-01	ci left: 2.546094e-04	ci right 3.333347e-04	k: 219	n:750000
FANCD2   750000 perm   401 sec   (1871 perm/sec)   p_kst 2.920000e-04   p_cons 8.035560e-01   p_joint 9.426667e-04

Joint ci ratio: 1.461221e-01	ci left: 8.769176e-04	ci right 1.016405e-03	k: 718	n:760000
Cons ci ratio: 2.223870e-03	ci left: 8.025745e-01	ci right 8.043626e-01	k: 610637	n:760000
KS ci ratio: 2.624639e-01	ci left: 2.549461e-04	ci right 3.331561e-04	k: 222	n:760000
FANCD2   760000 perm   409 sec   (1858 perm/sec)   p_kst 2.921053e-04   p_cons 8.034697e-01   p_joint 9.447368e-04

Joint ci ratio: 1.456171e-01	ci left: 8.717854e-04	ci right 1.009935e-03	k: 723	n:770000
Cons ci ratio: 2.209525e-03	ci left: 8.025600e-01	ci right 8.043365e-01	k: 618656	n:770000
KS ci ratio: 2.612950e-01	ci left: 2.540620e-04	ci right 3.315970e-04	k: 224	n:770000
FANCD2   770000 perm   418 sec   (1844 perm/sec)   p_kst 2.909091e-04   p_cons 8.034494e-01   p_joint 9.389610e-04

Joint ci ratio: 1.450177e-01	ci left: 8.680212e-04	ci right 1.004960e-03	k: 729	n:780000
Cons ci ratio: 2.195062e-03	ci left: 8.026023e-01	ci right 8.043672e-01	k: 626719	n:780000
KS ci ratio: 2.607166e-01	ci left: 2.520030e-04	ci right 3.287115e-04	k: 225	n:780000
FANCD2   780000 perm   426 sec   (1830 perm/sec)   p_kst 2.884615e-04   p_cons 8.034859e-01   p_joint 9.346154e-04

Joint ci ratio: 1.477797e-01	ci left: 8.241068e-04	ci right 9.568121e-04	k: 702	n:790000
Cons ci ratio: 2.181010e-03	ci left: 8.026246e-01	ci right 8.043783e-01	k: 634767	n:790000
KS ci ratio: 2.584394e-01	ci left: 2.535469e-04	ci right 3.299426e-04	k: 229	n:790000
FANCD2   790000 perm   435 sec   (1818 perm/sec)   p_kst 2.898734e-04   p_cons 8.035025e-01   p_joint 8.886076e-04

Joint ci ratio: 1.465341e-01	ci left: 8.282533e-04	ci right 9.604037e-04	k: 714	n:800000
Cons ci ratio: 2.167765e-03	ci left: 8.025675e-01	ci right 8.043103e-01	k: 642752	n:800000
KS ci ratio: 2.551325e-01	ci left: 2.573950e-04	ci right 3.337998e-04	k: 235	n:800000
FANCD2   800000 perm   444 sec   (1803 perm/sec)   p_kst 2.937500e-04   p_cons 8.034400e-01   p_joint 8.925000e-04

Joint ci ratio: 1.458222e-01	ci left: 8.263538e-04	ci right 9.575048e-04	k: 721	n:810000
Cons ci ratio: 2.154269e-03	ci left: 8.025835e-01	ci right 8.043156e-01	k: 650795	n:810000
KS ci ratio: 2.545940e-01	ci left: 2.553730e-04	ci right 3.309922e-04	k: 236	n:810000
FANCD2   810000 perm   453 sec   (1789 perm/sec)   p_kst 2.913580e-04   p_cons 8.034506e-01   p_joint 8.901235e-04

Joint ci ratio: 1.452203e-01	ci left: 8.233268e-04	ci right 9.534113e-04	k: 727	n:820000
Cons ci ratio: 2.140709e-03	ci left: 8.026456e-01	ci right 8.043669e-01	k: 658876	n:820000
KS ci ratio: 2.540588e-01	ci left: 2.534004e-04	ci right 3.282528e-04	k: 237	n:820000
FANCD2   820000 perm   463 sec   (1771 perm/sec)   p_kst 2.890244e-04   p_cons 8.035073e-01   p_joint 8.865854e-04

Joint ci ratio: 1.484181e-01	ci left: 7.774283e-04	ci right 9.032058e-04	k: 696	n:830000
Cons ci ratio: 2.127750e-03	ci left: 8.026544e-01	ci right 8.043652e-01	k: 666914	n:830000
KS ci ratio: 2.524726e-01	ci left: 2.537324e-04	ci right 3.281413e-04	k: 240	n:830000
FANCD2   830000 perm   472 sec   (1757 perm/sec)   p_kst 2.891566e-04   p_cons 8.035108e-01   p_joint 8.385542e-04

Joint ci ratio: 1.475737e-01	ci left: 7.773444e-04	ci right 9.023296e-04	k: 704	n:840000
Cons ci ratio: 2.115120e-03	ci left: 8.026486e-01	ci right 8.043493e-01	k: 674940	n:840000
KS ci ratio: 2.514316e-01	ci left: 2.529424e-04	ci right 3.267659e-04	k: 242	n:840000
FANCD2   840000 perm   482 sec   (1744 perm/sec)   p_kst 2.880952e-04   p_cons 8.035000e-01   p_joint 8.380952e-04

Joint ci ratio: 1.467435e-01	ci left: 7.772644e-04	ci right 9.014720e-04	k: 712	n:850000
Cons ci ratio: 2.102790e-03	ci left: 8.026313e-01	ci right 8.043220e-01	k: 682956	n:850000
KS ci ratio: 2.498938e-01	ci left: 2.532744e-04	ci right 3.266723e-04	k: 245	n:850000
FANCD2   850000 perm   491 sec   (1731 perm/sec)   p_kst 2.882353e-04   p_cons 8.034776e-01   p_joint 8.376471e-04

Joint ci ratio: 1.455237e-01	ci left: 7.816698e-04	ci right 9.054530e-04	k: 724	n:860000
Cons ci ratio: 2.090388e-03	ci left: 8.026574e-01	ci right 8.043382e-01	k: 691009	n:860000
KS ci ratio: 2.478864e-01	ci left: 2.546904e-04	ci right 3.278144e-04	k: 249	n:860000
FANCD2   860000 perm   500 sec   (1718 perm/sec)   p_kst 2.895349e-04   p_cons 8.034988e-01   p_joint 8.418605e-04

Joint ci ratio: 1.400262e-01	ci left: 8.369729e-04	ci right 9.640891e-04	k: 782	n:870000
Cons ci ratio: 2.078544e-03	ci left: 8.026312e-01	ci right 8.043024e-01	k: 699017	n:870000
KS ci ratio: 2.459266e-01	ci left: 2.560762e-04	ci right 3.289280e-04	k: 253	n:870000
FANCD2   870000 perm   510 sec   (1707 perm/sec)   p_kst 2.908046e-04   p_cons 8.034678e-01   p_joint 8.988506e-04

Joint ci ratio: 1.392284e-01	ci left: 8.373318e-04	ci right 9.637179e-04	k: 791	n:880000
Cons ci ratio: 2.066973e-03	ci left: 8.025943e-01	ci right 8.042560e-01	k: 707015	n:880000
KS ci ratio: 2.449642e-01	ci left: 2.552992e-04	ci right 3.276024e-04	k: 255	n:880000
FANCD2   880000 perm   523 sec   (1682 perm/sec)   p_kst 2.897727e-04   p_cons 8.034261e-01   p_joint 8.988636e-04

Joint ci ratio: 1.390534e-01	ci left: 8.300923e-04	ci right 9.552152e-04	k: 793	n:890000
Cons ci ratio: 2.055257e-03	ci left: 8.026099e-01	ci right 8.042623e-01	k: 715059	n:890000
KS ci ratio: 2.449646e-01	ci left: 2.524306e-04	ci right 3.239215e-04	k: 255	n:890000
FANCD2   890000 perm   532 sec   (1672 perm/sec)   p_kst 2.865169e-04   p_cons 8.034371e-01   p_joint 8.910112e-04

Joint ci ratio: 1.385312e-01	ci left: 8.273042e-04	ci right 9.514998e-04	k: 799	n:900000
Cons ci ratio: 2.044176e-03	ci left: 8.025574e-01	ci right 8.042007e-01	k: 723042	n:900000
KS ci ratio: 2.449650e-01	ci left: 2.496258e-04	ci right 3.203225e-04	k: 255	n:900000
FANCD2   900000 perm   542 sec   (1661 perm/sec)   p_kst 2.833333e-04   p_cons 8.033800e-01   p_joint 8.877778e-04

Joint ci ratio: 1.418539e-01	ci left: 7.789781e-04	ci right 8.989611e-04	k: 762	n:910000
Cons ci ratio: 2.033216e-03	ci left: 8.025148e-01	ci right 8.041492e-01	k: 731033	n:910000
KS ci ratio: 2.440138e-01	ci left: 2.489458e-04	ci right 3.191347e-04	k: 257	n:910000
FANCD2   910000 perm   552 sec   (1648 perm/sec)   p_kst 2.824176e-04   p_cons 8.033330e-01   p_joint 8.373626e-04

Joint ci ratio: 1.414839e-01	ci left: 7.747046e-04	ci right 8.936918e-04	k: 766	n:920000
Cons ci ratio: 2.022048e-03	ci left: 8.025331e-01	ci right 8.041585e-01	k: 739079	n:920000
KS ci ratio: 2.435425e-01	ci left: 2.472604e-04	ci right 3.168191e-04	k: 258	n:920000
FANCD2   920000 perm   562 sec   (1636 perm/sec)   p_kst 2.804348e-04   p_cons 8.033467e-01   p_joint 8.326087e-04

Joint ci ratio: 1.406610e-01	ci left: 7.757103e-04	ci right 8.941010e-04	k: 775	n:930000
Cons ci ratio: 2.011232e-03	ci left: 8.025240e-01	ci right 8.041408e-01	k: 747100	n:930000
KS ci ratio: 2.412249e-01	ci left: 2.496515e-04	ci right 3.191146e-04	k: 263	n:930000
FANCD2   930000 perm   573 sec   (1622 perm/sec)   p_kst 2.827957e-04   p_cons 8.033333e-01   p_joint 8.333333e-04

Joint ci ratio: 1.399415e-01	ci left: 7.756699e-04	ci right 8.933984e-04	k: 783	n:940000
Cons ci ratio: 2.000313e-03	ci left: 8.025589e-01	ci right 8.041669e-01	k: 755162	n:940000
KS ci ratio: 2.398659e-01	ci left: 2.499948e-04	ci right 3.191032e-04	k: 266	n:940000
FANCD2   940000 perm   584 sec   (1610 perm/sec)   p_kst 2.829787e-04   p_cons 8.033638e-01   p_joint 8.329787e-04

Joint ci ratio: 1.351930e-01	ci left: 8.244256e-04	ci right 9.449669e-04	k: 839	n:950000
Cons ci ratio: 1.990093e-03	ci left: 8.025098e-01	ci right 8.041094e-01	k: 763145	n:950000
KS ci ratio: 2.389727e-01	ci left: 2.493423e-04	ci right 3.179756e-04	k: 268	n:950000
FANCD2   950000 perm   596 sec   (1595 perm/sec)   p_kst 2.821053e-04   p_cons 8.033105e-01   p_joint 8.831579e-04

Joint ci ratio: 1.343162e-01	ci left: 8.269099e-04	ci right 9.469678e-04	k: 850	n:960000
Cons ci ratio: 1.979394e-03	ci left: 8.025629e-01	ci right 8.041540e-01	k: 771225	n:960000
KS ci ratio: 2.367819e-01	ci left: 2.516429e-04	ci right 3.201815e-04	k: 273	n:960000
FANCD2   960000 perm   608 sec   (1579 perm/sec)   p_kst 2.843750e-04   p_cons 8.033594e-01   p_joint 8.854167e-04

Joint ci ratio: 1.374227e-01	ci left: 7.805400e-04	ci right 8.967009e-04	k: 812	n:970000
Cons ci ratio: 1.969445e-03	ci left: 8.025220e-01	ci right 8.041051e-01	k: 779215	n:970000
KS ci ratio: 2.354962e-01	ci left: 2.519585e-04	ci right 3.201560e-04	k: 276	n:970000
FANCD2   970000 perm   618 sec   (1569 perm/sec)   p_kst 2.845361e-04   p_cons 8.033144e-01   p_joint 8.371134e-04

Joint ci ratio: 1.366683e-01	ci left: 7.814441e-04	ci right 8.970492e-04	k: 821	n:980000
Cons ci ratio: 1.959511e-03	ci left: 8.025034e-01	ci right 8.040785e-01	k: 787226	n:980000
KS ci ratio: 2.333989e-01	ci left: 2.541899e-04	ci right 3.222903e-04	k: 281	n:980000
FANCD2   980000 perm   630 sec   (1556 perm/sec)   p_kst 2.867347e-04   p_cons 8.032918e-01   p_joint 8.377551e-04

Joint ci ratio: 1.356812e-01	ci left: 7.852591e-04	ci right 9.005219e-04	k: 833	n:990000
Cons ci ratio: 1.949277e-03	ci left: 8.025581e-01	ci right 8.041250e-01	k: 795309	n:990000
KS ci ratio: 2.317609e-01	ci left: 2.554273e-04	ci right 3.233102e-04	k: 285	n:990000
FANCD2   990000 perm   642 sec   (1541 perm/sec)   p_kst 2.878788e-04   p_cons 8.033424e-01   p_joint 8.414141e-04

Joint ci ratio: 1.352766e-01	ci left: 7.822370e-04	ci right 8.966861e-04	k: 838	n:1000000
Cons ci ratio: 1.939632e-03	ci left: 8.025416e-01	ci right 8.041007e-01	k: 803322	n:1000000
KS ci ratio: 2.313570e-01	ci left: 2.538150e-04	ci right 3.211350e-04	k: 286	n:1000000
FANCD2   1000000 perm   654 sec   (1529 perm/sec)   p_kst 2.860000e-04   p_cons 8.033220e-01   p_joint 8.380000e-04

Joint ci ratio: 1.347956e-01	ci left: 7.802319e-04	ci right 8.939493e-04	k: 844	n:1010000
Cons ci ratio: 1.930213e-03	ci left: 8.025115e-01	ci right 8.040630e-01	k: 811321	n:1010000
KS ci ratio: 2.313573e-01	ci left: 2.513020e-04	ci right 3.179555e-04	k: 286	n:1010000
FANCD2   1010000 perm   666 sec   (1517 perm/sec)   p_kst 2.831683e-04   p_cons 8.032881e-01   p_joint 8.356436e-04

Joint ci ratio: 1.345573e-01	ci left: 7.754245e-04	ci right 8.882255e-04	k: 847	n:1020000
Cons ci ratio: 1.920620e-03	ci left: 8.025331e-01	ci right 8.040769e-01	k: 819372	n:1020000
KS ci ratio: 2.313576e-01	ci left: 2.488382e-04	ci right 3.148384e-04	k: 286	n:1020000
FANCD2   1020000 perm   677 sec   (1507 perm/sec)   p_kst 2.803922e-04   p_cons 8.033059e-01   p_joint 8.303922e-04

Joint ci ratio: 1.340840e-01	ci left: 7.735256e-04	ci right 8.856228e-04	k: 853	n:1030000
Cons ci ratio: 1.911250e-03	ci left: 8.025407e-01	ci right 8.040770e-01	k: 827409	n:1030000
KS ci ratio: 2.309558e-01	ci left: 2.473369e-04	ci right 3.128087e-04	k: 287	n:1030000
FANCD2   1030000 perm   687 sec   (1499 perm/sec)   p_kst 2.786408e-04   p_cons 8.033097e-01   p_joint 8.281553e-04

Joint ci ratio: 1.333829e-01	ci left: 7.744522e-04	ci right 8.860504e-04	k: 862	n:1040000
Cons ci ratio: 1.902318e-03	ci left: 8.024981e-01	ci right 8.040271e-01	k: 835394	n:1040000
KS ci ratio: 2.297622e-01	ci left: 2.476768e-04	ci right 3.128517e-04	k: 290	n:1040000
FANCD2   1040000 perm   699 sec   (1488 perm/sec)   p_kst 2.788462e-04   p_cons 8.032635e-01   p_joint 8.288462e-04

Joint ci ratio: 1.329218e-01	ci left: 7.726003e-04	ci right 8.835164e-04	k: 868	n:1050000
Cons ci ratio: 1.892956e-03	ci left: 8.025489e-01	ci right 8.040704e-01	k: 843476	n:1050000
KS ci ratio: 2.289768e-01	ci left: 2.471133e-04	ci right 3.118862e-04	k: 292	n:1050000
FANCD2   1050000 perm   710 sec   (1479 perm/sec)   p_kst 2.780952e-04   p_cons 8.033105e-01   p_joint 8.266667e-04

Joint ci ratio: 1.323142e-01	ci left: 7.726084e-04	ci right 8.829788e-04	k: 876	n:1060000
Cons ci ratio: 1.884130e-03	ci left: 8.025316e-01	ci right 8.040460e-01	k: 851487	n:1060000
KS ci ratio: 2.274295e-01	ci left: 2.483400e-04	ci right 3.129328e-04	k: 296	n:1060000
FANCD2   1060000 perm   722 sec   (1469 perm/sec)   p_kst 2.792453e-04   p_cons 8.032896e-01   p_joint 8.264151e-04

Joint ci ratio: 1.365900e-01	ci left: 7.166161e-04	ci right 8.225650e-04	k: 822	n:1070000
Cons ci ratio: 1.875770e-03	ci left: 8.024566e-01	ci right 8.039642e-01	k: 859436	n:1070000
KS ci ratio: 2.259132e-01	ci left: 2.495451e-04	ci right 3.139584e-04	k: 300	n:1070000
FANCD2   1070000 perm   733 sec   (1460 perm/sec)   p_kst 2.803738e-04   p_cons 8.032112e-01   p_joint 7.682243e-04

Joint ci ratio: 1.357675e-01	ci left: 7.189247e-04	ci right 8.245231e-04	k: 832	n:1080000
Cons ci ratio: 1.867023e-03	ci left: 8.024674e-01	ci right 8.039680e-01	k: 867476	n:1080000
KS ci ratio: 2.240596e-01	ci left: 2.516033e-04	ci right 3.159414e-04	k: 305	n:1080000
FANCD2   1080000 perm   745 sec   (1450 perm/sec)   p_kst 2.824074e-04   p_cons 8.032185e-01   p_joint 7.703704e-04

Joint ci ratio: 1.352007e-01	ci left: 7.185334e-04	ci right 8.235983e-04	k: 839	n:1090000
Cons ci ratio: 1.858186e-03	ci left: 8.025139e-01	ci right 8.040074e-01	k: 875555	n:1090000
KS ci ratio: 2.233311e-01	ci left: 2.510270e-04	ci right 3.149804e-04	k: 307	n:1090000
FANCD2   1090000 perm   757 sec   (1440 perm/sec)   p_kst 2.816514e-04   p_cons 8.032615e-01   p_joint 7.697248e-04

Joint ci ratio: 1.344821e-01	ci left: 7.199071e-04	ci right 8.245686e-04	k: 848	n:1100000
Cons ci ratio: 1.849745e-03	ci left: 8.025131e-01	ci right 8.039998e-01	k: 883583	n:1100000
KS ci ratio: 2.215399e-01	ci left: 2.530372e-04	ci right 3.169152e-04	k: 312	n:1100000
FANCD2   1100000 perm   769 sec   (1431 perm/sec)   p_kst 2.836364e-04   p_cons 8.032573e-01   p_joint 7.709091e-04

Joint ci ratio: 1.341666e-01	ci left: 7.169039e-04	ci right 8.208648e-04	k: 852	n:1110000
Cons ci ratio: 1.841486e-03	ci left: 8.025006e-01	ci right 8.039807e-01	k: 891598	n:1110000
KS ci ratio: 2.201376e-01	ci left: 2.541619e-04	ci right 3.178627e-04	k: 316	n:1110000
FANCD2   1110000 perm   781 sec   (1422 perm/sec)   p_kst 2.846847e-04   p_cons 8.032414e-01   p_joint 7.675676e-04

Joint ci ratio: 1.334643e-01	ci left: 7.182697e-04	ci right 8.218402e-04	k: 861	n:1120000
Cons ci ratio: 1.833296e-03	ci left: 8.024955e-01	ci right 8.039690e-01	k: 899621	n:1120000
KS ci ratio: 2.194465e-01	ci left: 2.535800e-04	ci right 3.169085e-04	k: 318	n:1120000
FANCD2   1120000 perm   794 sec   (1411 perm/sec)   p_kst 2.839286e-04   p_cons 8.032330e-01   p_joint 7.687500e-04

Joint ci ratio: 1.328492e-01	ci left: 7.187571e-04	ci right 8.218826e-04	k: 869	n:1130000
Cons ci ratio: 1.825438e-03	ci left: 8.024516e-01	ci right 8.039186e-01	k: 907600	n:1130000
KS ci ratio: 2.177465e-01	ci left: 2.555185e-04	ci right 3.187706e-04	k: 323	n:1130000
FANCD2   1130000 perm   807 sec   (1401 perm/sec)   p_kst 2.858407e-04   p_cons 8.031858e-01   p_joint 7.690265e-04

Joint ci ratio: 1.323936e-01	ci left: 7.175408e-04	ci right 8.201108e-04	k: 875	n:1140000
Cons ci ratio: 1.817449e-03	ci left: 8.024488e-01	ci right 8.039093e-01	k: 915625	n:1140000
KS ci ratio: 2.170776e-01	ci left: 2.549359e-04	ci right 3.178242e-04	k: 325	n:1140000
FANCD2   1140000 perm   819 sec   (1392 perm/sec)   p_kst 2.850877e-04   p_cons 8.031798e-01   p_joint 7.675439e-04

Joint ci ratio: 1.317186e-01	ci left: 7.188689e-04	ci right 8.210639e-04	k: 884	n:1150000
Cons ci ratio: 1.809394e-03	ci left: 8.024756e-01	ci right 8.039298e-01	k: 923684	n:1150000
KS ci ratio: 2.164148e-01	ci left: 2.543638e-04	ci right 3.168939e-04	k: 327	n:1150000
FANCD2   1150000 perm   831 sec   (1383 perm/sec)   p_kst 2.843478e-04   p_cons 8.032035e-01   p_joint 7.686957e-04

Joint ci ratio: 1.312008e-01	ci left: 7.185077e-04	ci right 8.202186e-04	k: 891	n:1160000
Cons ci ratio: 1.801240e-03	ci left: 8.025383e-01	ci right 8.039860e-01	k: 931785	n:1160000
KS ci ratio: 2.151071e-01	ci left: 2.554330e-04	ci right 3.177964e-04	k: 331	n:1160000
FANCD2   1160000 perm   845 sec   (1373 perm/sec)   p_kst 2.853448e-04   p_cons 8.032629e-01   p_joint 7.681034e-04

Joint ci ratio: 1.308348e-01	ci left: 7.165000e-04	ci right 8.176217e-04	k: 896	n:1170000
Cons ci ratio: 1.793494e-03	ci left: 8.025469e-01	ci right 8.039884e-01	k: 939824	n:1170000
KS ci ratio: 2.144621e-01	ci left: 2.548673e-04	ci right 3.168814e-04	k: 333	n:1170000
FANCD2   1170000 perm   857 sec   (1365 perm/sec)   p_kst 2.846154e-04   p_cons 8.032684e-01   p_joint 7.658120e-04

Joint ci ratio: 1.297539e-01	ci left: 7.227257e-04	ci right 8.238185e-04	k: 911	n:1180000
Cons ci ratio: 1.785916e-03	ci left: 8.025434e-01	ci right 8.039788e-01	k: 947849	n:1180000
KS ci ratio: 2.128745e-01	ci left: 2.567179e-04	ci right 3.186596e-04	k: 338	n:1180000
FANCD2   1180000 perm   871 sec   (1356 perm/sec)   p_kst 2.864407e-04   p_cons 8.032619e-01   p_joint 7.720339e-04

Joint ci ratio: 1.293293e-01	ci left: 7.215309e-04	ci right 8.221010e-04	k: 917	n:1190000
Cons ci ratio: 1.778304e-03	ci left: 8.025628e-01	ci right 8.039921e-01	k: 955901	n:1190000
KS ci ratio: 2.122494e-01	ci left: 2.561518e-04	ci right 3.177518e-04	k: 340	n:1190000
FANCD2   1190000 perm   884 sec   (1347 perm/sec)   p_kst 2.857143e-04   p_cons 8.032782e-01   p_joint 7.705882e-04

Joint ci ratio: 1.289787e-01	ci left: 7.195502e-04	ci right 8.195514e-04	k: 922	n:1200000
Cons ci ratio: 1.770897e-03	ci left: 8.025626e-01	ci right 8.039859e-01	k: 963930	n:1200000
KS ci ratio: 2.116298e-01	ci left: 2.555955e-04	ci right 3.168589e-04	k: 342	n:1200000
FANCD2   1200000 perm   896 sec   (1340 perm/sec)   p_kst 2.850000e-04   p_cons 8.032750e-01   p_joint 7.683333e-04

Joint ci ratio: 1.283544e-01	ci left: 7.208021e-04	ci right 8.204555e-04	k: 931	n:1210000
Cons ci ratio: 1.763406e-03	ci left: 8.025939e-01	ci right 8.040113e-01	k: 971997	n:1210000
KS ci ratio: 2.104064e-01	ci left: 2.566142e-04	ci right 3.177204e-04	k: 346	n:1210000
FANCD2   1210000 perm   908 sec   (1332 perm/sec)   p_kst 2.859504e-04   p_cons 8.033033e-01   p_joint 7.694215e-04

Joint ci ratio: 1.278070e-01	ci left: 7.212412e-04	ci right 8.204978e-04	k: 939	n:1220000
Cons ci ratio: 1.756064e-03	ci left: 8.026149e-01	ci right 8.040263e-01	k: 980052	n:1220000
KS ci ratio: 2.089065e-01	ci left: 2.583940e-04	ci right 3.194293e-04	k: 351	n:1220000
FANCD2   1220000 perm   922 sec   (1323 perm/sec)   p_kst 2.877049e-04   p_cons 8.033213e-01   p_joint 7.696721e-04

Joint ci ratio: 1.271994e-01	ci left: 7.224612e-04	ci right 8.213774e-04	k: 948	n:1230000
Cons ci ratio: 1.749177e-03	ci left: 8.025695e-01	ci right 8.039754e-01	k: 988026	n:1230000
KS ci ratio: 2.074382e-01	ci left: 2.601464e-04	ci right 3.211090e-04	k: 356	n:1230000
FANCD2   1230000 perm   934 sec   (1316 perm/sec)   p_kst 2.894309e-04   p_cons 8.032732e-01   p_joint 7.707317e-04

Joint ci ratio: 1.267329e-01	ci left: 7.221007e-04	ci right 8.205778e-04	k: 955	n:1240000
Cons ci ratio: 1.742006e-03	ci left: 8.025912e-01	ci right 8.039913e-01	k: 996082	n:1240000
KS ci ratio: 2.068597e-01	ci left: 2.595777e-04	ci right 3.202158e-04	k: 358	n:1240000
FANCD2   1240000 perm   947 sec   (1310 perm/sec)   p_kst 2.887097e-04   p_cons 8.032919e-01   p_joint 7.701613e-04

Joint ci ratio: 1.264688e-01	ci left: 7.194225e-04	ci right 8.173145e-04	k: 959	n:1250000
Cons ci ratio: 1.735209e-03	ci left: 8.025604e-01	ci right 8.039550e-01	k: 1004073	n:1250000
KS ci ratio: 2.062859e-01	ci left: 2.590183e-04	ci right 3.193368e-04	k: 360	n:1250000
FANCD2   1250000 perm   959 sec   (1303 perm/sec)   p_kst 2.880000e-04   p_cons 8.032584e-01   p_joint 7.672000e-04

Joint ci ratio: 1.260103e-01	ci left: 7.190929e-04	ci right 8.165588e-04	k: 966	n:1260000
Cons ci ratio: 1.728355e-03	ci left: 8.025548e-01	ci right 8.039438e-01	k: 1012095	n:1260000
KS ci ratio: 2.062861e-01	ci left: 2.569626e-04	ci right 3.168024e-04	k: 360	n:1260000
FANCD2   1260000 perm   972 sec   (1296 perm/sec)   p_kst 2.857143e-04   p_cons 8.032500e-01   p_joint 7.666667e-04

Joint ci ratio: 1.254279e-01	ci left: 7.202945e-04	ci right 8.174386e-04	k: 975	n:1270000
Cons ci ratio: 1.721278e-03	ci left: 8.026052e-01	ci right 8.039887e-01	k: 1020188	n:1270000
KS ci ratio: 2.045927e-01	ci left: 2.594207e-04	ci right 3.192750e-04	k: 366	n:1270000
FANCD2   1270000 perm   985 sec   (1290 perm/sec)   p_kst 2.881890e-04   p_cons 8.032976e-01   p_joint 7.677165e-04

Joint ci ratio: 1.250442e-01	ci left: 7.192079e-04	ci right 8.158866e-04	k: 981	n:1280000
Cons ci ratio: 1.714515e-03	ci left: 8.026126e-01	ci right 8.039907e-01	k: 1028227	n:1280000
KS ci ratio: 2.034867e-01	ci left: 2.603593e-04	ci right 3.200651e-04	k: 370	n:1280000
FANCD2   1280000 perm   999 sec   (1282 perm/sec)   p_kst 2.890625e-04   p_cons 8.033023e-01   p_joint 7.664063e-04

Joint ci ratio: 1.383769e-01	ci left: 5.786805e-04	ci right 6.654475e-04	k: 801	n:1290000
Cons ci ratio: 1.707865e-03	ci left: 8.026138e-01	ci right 8.039864e-01	k: 1036258	n:1290000
KS ci ratio: 2.021290e-01	ci left: 2.620202e-04	ci right 3.216564e-04	k: 375	n:1290000
FANCD2   1290000 perm   1013 sec   (1274 perm/sec)   p_kst 2.906977e-04   p_cons 8.033008e-01   p_joint 6.209302e-04

Joint ci ratio: 1.378622e-01	ci left: 5.786850e-04	ci right 6.651035e-04	k: 807	n:1300000
Cons ci ratio: 1.701263e-03	ci left: 8.026203e-01	ci right 8.039876e-01	k: 1044296	n:1300000
KS ci ratio: 2.018609e-01	ci left: 2.607349e-04	ci right 3.199903e-04	k: 376	n:1300000
FANCD2   1300000 perm   1027 sec   (1266 perm/sec)   p_kst 2.892308e-04   p_cons 8.033046e-01   p_joint 6.207692e-04

Joint ci ratio: 1.371846e-01	ci left: 5.801644e-04	ci right 6.663431e-04	k: 815	n:1310000
Cons ci ratio: 1.694618e-03	ci left: 8.026488e-01	ci right 8.040109e-01	k: 1052363	n:1310000
KS ci ratio: 2.010625e-01	ci left: 2.609192e-04	ci right 3.199530e-04	k: 379	n:1310000
FANCD2   1310000 perm   1040 sec   (1260 perm/sec)   p_kst 2.893130e-04   p_cons 8.033305e-01   p_joint 6.221374e-04

Joint ci ratio: 1.367663e-01	ci left: 5.794272e-04	ci right 6.652127e-04	k: 820	n:1320000
Cons ci ratio: 1.688055e-03	ci left: 8.026762e-01	ci right 8.040331e-01	k: 1060429	n:1320000
KS ci ratio: 2.005355e-01	ci left: 2.603815e-04	ci right 3.191204e-04	k: 381	n:1320000
FANCD2   1320000 perm   1053 sec   (1253 perm/sec)   p_kst 2.886364e-04   p_cons 8.033553e-01   p_joint 6.212121e-04

Joint ci ratio: 1.363518e-01	ci left: 5.787016e-04	ci right 6.640989e-04	k: 825	n:1330000
Cons ci ratio: 1.681735e-03	ci left: 8.026716e-01	ci right 8.040233e-01	k: 1068453	n:1330000
KS ci ratio: 2.000127e-01	ci left: 2.598521e-04	ci right 3.183001e-04	k: 383	n:1330000
FANCD2   1330000 perm   1066 sec   (1248 perm/sec)   p_kst 2.879699e-04   p_cons 8.033481e-01   p_joint 6.203008e-04

Joint ci ratio: 1.359411e-01	ci left: 5.779871e-04	ci right 6.630013e-04	k: 830	n:1340000
Cons ci ratio: 1.675402e-03	ci left: 8.026827e-01	ci right 8.040294e-01	k: 1076498	n:1340000
KS ci ratio: 1.997529e-01	ci left: 2.586218e-04	ci right 3.167083e-04	k: 384	n:1340000
FANCD2   1340000 perm   1079 sec   (1242 perm/sec)   p_kst 2.865672e-04   p_cons 8.033567e-01   p_joint 6.194030e-04

Joint ci ratio: 1.354530e-01	ci left: 5.779993e-04	ci right 6.626854e-04	k: 836	n:1350000
Cons ci ratio: 1.669211e-03	ci left: 8.026804e-01	ci right 8.040220e-01	k: 1084525	n:1350000
KS ci ratio: 1.987232e-01	ci left: 2.595212e-04	ci right 3.174729e-04	k: 388	n:1350000
FANCD2   1350000 perm   1092 sec   (1236 perm/sec)   p_kst 2.874074e-04   p_cons 8.033519e-01   p_joint 6.192593e-04

Joint ci ratio: 1.348102e-01	ci left: 5.794329e-04	ci right 6.638938e-04	k: 844	n:1360000
Cons ci ratio: 1.663367e-03	ci left: 8.026250e-01	ci right 8.039619e-01	k: 1092480	n:1360000
KS ci ratio: 1.982143e-01	ci left: 2.590105e-04	ci right 3.166821e-04	k: 390	n:1360000
FANCD2   1360000 perm   1106 sec   (1230 perm/sec)   p_kst 2.867647e-04   p_cons 8.032941e-01   p_joint 6.205882e-04

Joint ci ratio: 1.344923e-01	ci left: 5.780247e-04	ci right 6.620659e-04	k: 848	n:1370000
Cons ci ratio: 1.657327e-03	ci left: 8.026195e-01	ci right 8.039515e-01	k: 1100502	n:1370000
KS ci ratio: 1.977094e-01	ci left: 2.585074e-04	ci right 3.159027e-04	k: 392	n:1370000
FANCD2   1370000 perm   1119 sec   (1224 perm/sec)   p_kst 2.861314e-04   p_cons 8.032861e-01   p_joint 6.189781e-04

Joint ci ratio: 1.306967e-01	ci left: 6.088671e-04	ci right 6.947004e-04	k: 898	n:1380000
Cons ci ratio: 1.651394e-03	ci left: 8.026060e-01	ci right 8.039333e-01	k: 1108513	n:1380000
KS ci ratio: 1.974585e-01	ci left: 2.573229e-04	ci right 3.143740e-04	k: 393	n:1380000
FANCD2   1380000 perm   1133 sec   (1218 perm/sec)   p_kst 2.847826e-04   p_cons 8.032703e-01   p_joint 6.507246e-04

Joint ci ratio: 1.301908e-01	ci left: 6.093584e-04	ci right 6.949027e-04	k: 905	n:1390000
Cons ci ratio: 1.645143e-03	ci left: 8.026663e-01	ci right 8.039886e-01	k: 1116626	n:1390000
KS ci ratio: 1.969593e-01	ci left: 2.568395e-04	ci right 3.136221e-04	k: 395	n:1390000
FANCD2   1390000 perm   1147 sec   (1212 perm/sec)   p_kst 2.841727e-04   p_cons 8.033281e-01   p_joint 6.510791e-04

Joint ci ratio: 1.296197e-01	ci left: 6.105344e-04	ci right 6.958390e-04	k: 913	n:1400000
Cons ci ratio: 1.639009e-03	ci left: 8.027164e-01	ci right 8.040338e-01	k: 1124726	n:1400000
KS ci ratio: 1.964638e-01	ci left: 2.563631e-04	ci right 3.128808e-04	k: 397	n:1400000
FANCD2   1400000 perm   1160 sec   (1207 perm/sec)   p_kst 2.835714e-04   p_cons 8.033757e-01   p_joint 6.521429e-04

Joint ci ratio: 1.289861e-01	ci left: 6.123809e-04	ci right 6.974932e-04	k: 922	n:1410000
Cons ci ratio: 1.633212e-03	ci left: 8.027139e-01	ci right 8.040267e-01	k: 1132753	n:1410000
KS ci ratio: 1.959721e-01	ci left: 2.558937e-04	ci right 3.121498e-04	k: 399	n:1410000
FANCD2   1410000 perm   1174 sec   (1201 perm/sec)   p_kst 2.829787e-04   p_cons 8.033709e-01   p_joint 6.539007e-04

Joint ci ratio: 1.286382e-01	ci left: 6.114760e-04	ci right 6.962159e-04	k: 927	n:1420000
Cons ci ratio: 1.627424e-03	ci left: 8.027214e-01	ci right 8.040295e-01	k: 1140794	n:1420000
KS ci ratio: 1.952413e-01	ci left: 2.561008e-04	ci right 3.121676e-04	k: 402	n:1420000
FANCD2   1420000 perm   1187 sec   (1196 perm/sec)   p_kst 2.830986e-04   p_cons 8.033761e-01   p_joint 6.528169e-04

Joint ci ratio: 1.311368e-01	ci left: 5.835191e-04	ci right 6.660776e-04	k: 892	n:1430000
Cons ci ratio: 1.621964e-03	ci left: 8.026769e-01	ci right 8.039806e-01	k: 1148761	n:1430000
KS ci ratio: 1.945186e-01	ci left: 2.563055e-04	ci right 3.121847e-04	k: 405	n:1430000
FANCD2   1430000 perm   1201 sec   (1191 perm/sec)   p_kst 2.832168e-04   p_cons 8.033294e-01   p_joint 6.237762e-04

Joint ci ratio: 1.306985e-01	ci left: 5.834971e-04	ci right 6.657551e-04	k: 898	n:1440000
Cons ci ratio: 1.616362e-03	ci left: 8.026714e-01	ci right 8.039705e-01	k: 1156783	n:1440000
KS ci ratio: 1.945188e-01	ci left: 2.545255e-04	ci right 3.100168e-04	k: 405	n:1440000
FANCD2   1440000 perm   1215 sec   (1185 perm/sec)   p_kst 2.812500e-04   p_cons 8.033215e-01   p_joint 6.236111e-04

Joint ci ratio: 1.302645e-01	ci left: 5.834758e-04	ci right 6.654366e-04	k: 904	n:1450000
Cons ci ratio: 1.610864e-03	ci left: 8.026569e-01	ci right 8.039516e-01	k: 1164792	n:1450000
KS ci ratio: 1.940415e-01	ci left: 2.540824e-04	ci right 3.093251e-04	k: 407	n:1450000
FANCD2   1450000 perm   1230 sec   (1179 perm/sec)   p_kst 2.806897e-04   p_cons 8.033048e-01   p_joint 6.234483e-04

Joint ci ratio: 1.298348e-01	ci left: 5.834553e-04	ci right 6.651221e-04	k: 910	n:1460000
Cons ci ratio: 1.605098e-03	ci left: 8.027064e-01	ci right 8.039965e-01	k: 1172894	n:1460000
KS ci ratio: 1.940417e-01	ci left: 2.523421e-04	ci right 3.072065e-04	k: 407	n:1460000
FANCD2   1460000 perm   1245 sec   (1173 perm/sec)   p_kst 2.787671e-04   p_cons 8.033521e-01   p_joint 6.232877e-04

Joint ci ratio: 1.294094e-01	ci left: 5.834355e-04	ci right 6.648113e-04	k: 916	n:1470000
Cons ci ratio: 1.599669e-03	ci left: 8.027007e-01	ci right 8.039865e-01	k: 1180916	n:1470000
KS ci ratio: 1.933322e-01	ci left: 2.525673e-04	ci right 3.072563e-04	k: 410	n:1470000
FANCD2   1470000 perm   1258 sec   (1168 perm/sec)   p_kst 2.789116e-04   p_cons 8.033442e-01   p_joint 6.231293e-04

Joint ci ratio: 1.289182e-01	ci left: 5.840703e-04	ci right 6.652018e-04	k: 923	n:1480000
Cons ci ratio: 1.594287e-03	ci left: 8.026965e-01	ci right 8.039779e-01	k: 1188940	n:1480000
KS ci ratio: 1.926305e-01	ci left: 2.527899e-04	ci right 3.073051e-04	k: 413	n:1480000
FANCD2   1480000 perm   1272 sec   (1163 perm/sec)   p_kst 2.790541e-04   p_cons 8.033378e-01   p_joint 6.236486e-04

Joint ci ratio: 1.283637e-01	ci left: 5.853467e-04	ci right 6.662792e-04	k: 931	n:1490000
Cons ci ratio: 1.589024e-03	ci left: 8.026796e-01	ci right 8.039568e-01	k: 1196945	n:1490000
KS ci ratio: 1.919363e-01	ci left: 2.530098e-04	ci right 3.073528e-04	k: 416	n:1490000
FANCD2   1490000 perm   1286 sec   (1159 perm/sec)   p_kst 2.791946e-04   p_cons 8.033188e-01   p_joint 6.248322e-04

Joint ci ratio: 1.278843e-01	ci left: 5.859615e-04	ci right 6.666535e-04	k: 938	n:1500000
Cons ci ratio: 1.583672e-03	ci left: 8.026910e-01	ci right 8.039638e-01	k: 1204992	n:1500000
KS ci ratio: 1.905700e-01	ci left: 2.551316e-04	ci right 3.094951e-04	k: 422	n:1500000
FANCD2   1500000 perm   1301 sec   (1153 perm/sec)   p_kst 2.813333e-04   p_cons 8.033280e-01   p_joint 6.253333e-04

Joint ci ratio: 1.275452e-01	ci left: 5.852865e-04	ci right 6.656555e-04	k: 943	n:1510000
Cons ci ratio: 1.578365e-03	ci left: 8.027042e-01	ci right 8.039728e-01	k: 1213042	n:1510000
KS ci ratio: 1.903452e-01	ci left: 2.540727e-04	ci right 3.081392e-04	k: 423	n:1510000
FANCD2   1510000 perm   1316 sec   (1148 perm/sec)   p_kst 2.801325e-04   p_cons 8.033391e-01   p_joint 6.245033e-04

Joint ci ratio: 1.272088e-01	ci left: 5.846205e-04	ci right 6.646705e-04	k: 948	n:1520000
Cons ci ratio: 1.573080e-03	ci left: 8.027232e-01	ci right 8.039875e-01	k: 1221101	n:1520000
KS ci ratio: 1.896754e-01	ci left: 2.542809e-04	ci right 3.081795e-04	k: 426	n:1520000
FANCD2   1520000 perm   1331 sec   (1142 perm/sec)   p_kst 2.802632e-04   p_cons 8.033559e-01   p_joint 6.236842e-04

Joint ci ratio: 1.268086e-01	ci left: 5.845965e-04	ci right 6.643723e-04	k: 954	n:1530000
Cons ci ratio: 1.567907e-03	ci left: 8.027301e-01	ci right 8.039903e-01	k: 1229142	n:1530000
KS ci ratio: 1.894538e-01	ci left: 2.532415e-04	ci right 3.068498e-04	k: 427	n:1530000
FANCD2   1530000 perm   1345 sec   (1137 perm/sec)   p_kst 2.790850e-04   p_cons 8.033608e-01   p_joint 6.235294e-04

Joint ci ratio: 1.264121e-01	ci left: 5.845731e-04	ci right 6.640777e-04	k: 960	n:1540000
Cons ci ratio: 1.562614e-03	ci left: 8.027714e-01	ci right 8.040274e-01	k: 1237236	n:1540000
KS ci ratio: 1.887933e-01	ci left: 2.534529e-04	ci right 3.068975e-04	k: 430	n:1540000
FANCD2   1540000 perm   1360 sec   (1132 perm/sec)   p_kst 2.792208e-04   p_cons 8.034000e-01   p_joint 6.233766e-04

Joint ci ratio: 1.258891e-01	ci left: 5.858001e-04	ci right 6.651173e-04	k: 968	n:1550000
Cons ci ratio: 1.557740e-03	ci left: 8.027379e-01	ci right 8.039900e-01	k: 1245215	n:1550000
KS ci ratio: 1.887934e-01	ci left: 2.518177e-04	ci right 3.049175e-04	k: 430	n:1550000
FANCD2   1550000 perm   1374 sec   (1128 perm/sec)   p_kst 2.774194e-04   p_cons 8.033645e-01   p_joint 6.245161e-04

Joint ci ratio: 1.312137e-01	ci left: 5.342716e-04	ci right 6.099102e-04	k: 891	n:1560000
Cons ci ratio: 1.552420e-03	ci left: 8.028050e-01	ci right 8.040529e-01	k: 1253350	n:1560000
KS ci ratio: 1.885749e-01	ci left: 2.508142e-04	ci right 3.036342e-04	k: 431	n:1560000
FANCD2   1560000 perm   1390 sec   (1123 perm/sec)   p_kst 2.762821e-04   p_cons 8.034295e-01   p_joint 5.711538e-04

Joint ci ratio: 1.309938e-01	ci left: 5.327168e-04	ci right 6.079989e-04	k: 894	n:1570000
Cons ci ratio: 1.547297e-03	ci left: 8.028419e-01	ci right 8.040857e-01	k: 1261439	n:1570000
KS ci ratio: 1.883571e-01	ci left: 2.498236e-04	ci right 3.023672e-04	k: 432	n:1570000
FANCD2   1570000 perm   1404 sec   (1118 perm/sec)   p_kst 2.751592e-04   p_cons 8.034643e-01   p_joint 5.694268e-04

Joint ci ratio: 1.307021e-01	ci left: 5.317939e-04	ci right 6.067653e-04	k: 898	n:1580000
Cons ci ratio: 1.542281e-03	ci left: 8.028669e-01	ci right 8.041067e-01	k: 1269510	n:1580000
KS ci ratio: 1.877080e-01	ci left: 2.500518e-04	ci right 3.024415e-04	k: 435	n:1580000
FANCD2   1580000 perm   1420 sec   (1113 perm/sec)   p_kst 2.753165e-04   p_cons 8.034873e-01   p_joint 5.683544e-04

Joint ci ratio: 1.304123e-01	ci left: 5.308828e-04	ci right 6.055470e-04	k: 902	n:1590000
Cons ci ratio: 1.537674e-03	ci left: 8.028173e-01	ci right 8.040533e-01	k: 1277463	n:1590000
KS ci ratio: 1.870655e-01	ci left: 2.502774e-04	ci right 3.025145e-04	k: 438	n:1590000
FANCD2   1590000 perm   1436 sec   (1108 perm/sec)   p_kst 2.754717e-04   p_cons 8.034358e-01   p_joint 5.672956e-04

Joint ci ratio: 1.301245e-01	ci left: 5.299833e-04	ci right 6.043438e-04	k: 906	n:1600000
Cons ci ratio: 1.532807e-03	ci left: 8.028303e-01	ci right 8.040624e-01	k: 1285515	n:1600000
KS ci ratio: 1.866409e-01	ci left: 2.499047e-04	ci right 3.019322e-04	k: 440	n:1600000
FANCD2   1600000 perm   1451 sec   (1103 perm/sec)   p_kst 2.750000e-04   p_cons 8.034469e-01   p_joint 5.662500e-04

Joint ci ratio: 1.296962e-01	ci left: 5.302971e-04	ci right 6.044379e-04	k: 912	n:1610000
Cons ci ratio: 1.528065e-03	ci left: 8.028269e-01	ci right 8.040552e-01	k: 1293541	n:1610000
KS ci ratio: 1.862191e-01	ci left: 2.495368e-04	ci right 3.013570e-04	k: 442	n:1610000
FANCD2   1610000 perm   1467 sec   (1097 perm/sec)   p_kst 2.745342e-04   p_cons 8.034416e-01   p_joint 5.664596e-04

Joint ci ratio: 1.292018e-01	ci left: 5.312047e-04	ci right 6.051676e-04	k: 919	n:1620000
Cons ci ratio: 1.523262e-03	ci left: 8.028452e-01	ci right 8.040697e-01	k: 1301602	n:1620000
KS ci ratio: 1.855918e-01	ci left: 2.497621e-04	ci right 3.014347e-04	k: 445	n:1620000
FANCD2   1620000 perm   1482 sec   (1093 perm/sec)   p_kst 2.746914e-04   p_cons 8.034580e-01   p_joint 5.672840e-04

Joint ci ratio: 1.289219e-01	ci left: 5.303206e-04	ci right 6.039881e-04	k: 923	n:1630000
Cons ci ratio: 1.518581e-03	ci left: 8.028474e-01	ci right 8.040681e-01	k: 1309637	n:1630000
KS ci ratio: 1.851771e-01	ci left: 2.493999e-04	ci right 3.008693e-04	k: 447	n:1630000
FANCD2   1630000 perm   1497 sec   (1089 perm/sec)   p_kst 2.742331e-04   p_cons 8.034583e-01   p_joint 5.662577e-04

Joint ci ratio: 1.287828e-01	ci left: 5.282671e-04	ci right 6.015641e-04	k: 925	n:1640000
Cons ci ratio: 1.513745e-03	ci left: 8.028910e-01	ci right 8.041079e-01	k: 1317740	n:1640000
KS ci ratio: 1.847652e-01	ci left: 2.490422e-04	ci right 3.003107e-04	k: 449	n:1640000
FANCD2   1640000 perm   1513 sec   (1084 perm/sec)   p_kst 2.737805e-04   p_cons 8.035000e-01   p_joint 5.640244e-04

Joint ci ratio: 1.284365e-01	ci left: 5.279983e-04	ci right 6.010460e-04	k: 930	n:1650000
Cons ci ratio: 1.509116e-03	ci left: 8.029002e-01	ci right 8.041133e-01	k: 1325787	n:1650000
KS ci ratio: 1.843560e-01	ci left: 2.486889e-04	ci right 2.997587e-04	k: 451	n:1650000
FANCD2   1650000 perm   1528 sec   (1080 perm/sec)   p_kst 2.733333e-04   p_cons 8.035073e-01   p_joint 5.636364e-04

Joint ci ratio: 1.282302e-01	ci left: 5.265667e-04	ci right 5.992905e-04	k: 933	n:1660000
Cons ci ratio: 1.504681e-03	ci left: 8.028772e-01	ci right 8.040868e-01	k: 1333781	n:1660000
KS ci ratio: 1.835455e-01	ci left: 2.494895e-04	ci right 3.004733e-04	k: 455	n:1660000
FANCD2   1660000 perm   1544 sec   (1075 perm/sec)   p_kst 2.740964e-04   p_cons 8.034825e-01   p_joint 5.620482e-04

Joint ci ratio: 1.274141e-01	ci left: 5.303696e-04	ci right 6.031171e-04	k: 945	n:1670000
Cons ci ratio: 1.500234e-03	ci left: 8.028654e-01	ci right 8.040713e-01	k: 1341793	n:1670000
KS ci ratio: 1.817603e-01	ci left: 2.531384e-04	ci right 3.043094e-04	k: 464	n:1670000
FANCD2   1670000 perm   1559 sec   (1071 perm/sec)   p_kst 2.778443e-04   p_cons 8.034689e-01   p_joint 5.658683e-04

Joint ci ratio: 1.268786e-01	ci left: 5.318231e-04	ci right 6.044404e-04	k: 953	n:1680000
Cons ci ratio: 1.495807e-03	ci left: 8.028578e-01	ci right 8.040602e-01	k: 1349812	n:1680000
KS ci ratio: 1.807908e-01	ci left: 2.544728e-04	ci right 3.056091e-04	k: 469	n:1680000
FANCD2   1680000 perm   1574 sec   (1067 perm/sec)   p_kst 2.791667e-04   p_cons 8.034595e-01   p_joint 5.672619e-04

Joint ci ratio: 1.264156e-01	ci left: 5.326870e-04	ci right 6.051370e-04	k: 960	n:1690000
Cons ci ratio: 1.491379e-03	ci left: 8.028586e-01	ci right 8.040575e-01	k: 1357845	n:1690000
KS ci ratio: 1.798366e-01	ci left: 2.557921e-04	ci right 3.068927e-04	k: 474	n:1690000
FANCD2   1690000 perm   1591 sec   (1062 perm/sec)   p_kst 2.804734e-04   p_cons 8.034586e-01   p_joint 5.680473e-04

Joint ci ratio: 1.258926e-01	ci left: 5.341109e-04	ci right 6.064316e-04	k: 968	n:1700000
Cons ci ratio: 1.486974e-03	ci left: 8.028630e-01	ci right 8.040583e-01	k: 1365884	n:1700000
KS ci ratio: 1.790841e-01	ci left: 2.565347e-04	ci right 3.075460e-04	k: 478	n:1700000
FANCD2   1700000 perm   1608 sec   (1058 perm/sec)   p_kst 2.811765e-04   p_cons 8.034612e-01   p_joint 5.694118e-04

Joint ci ratio: 1.256983e-01	ci left: 5.326866e-04	ci right 6.046948e-04	k: 971	n:1710000
Cons ci ratio: 1.482627e-03	ci left: 8.028632e-01	ci right 8.040550e-01	k: 1373916	n:1710000
KS ci ratio: 1.788975e-01	ci left: 2.555931e-04	ci right 3.063585e-04	k: 479	n:1710000
FANCD2   1710000 perm   1625 sec   (1052 perm/sec)   p_kst 2.801170e-04   p_cons 8.034596e-01   p_joint 5.678363e-04

Joint ci ratio: 1.253763e-01	ci left: 5.324053e-04	ci right 6.041774e-04	k: 976	n:1720000
Cons ci ratio: 1.478457e-03	ci left: 8.028338e-01	ci right 8.040222e-01	k: 1381897	n:1720000
KS ci ratio: 1.779729e-01	ci left: 2.568842e-04	ci right 3.076140e-04	k: 484	n:1720000
FANCD2   1720000 perm   1642 sec   (1048 perm/sec)   p_kst 2.813953e-04   p_cons 8.034285e-01   p_joint 5.674419e-04

Joint ci ratio: 1.249930e-01	ci left: 5.326874e-04	ci right 6.042618e-04	k: 982	n:1730000
Cons ci ratio: 1.474060e-03	ci left: 8.028608e-01	ci right 8.040457e-01	k: 1389975	n:1730000
KS ci ratio: 1.776071e-01	ci left: 2.565040e-04	ci right 3.070433e-04	k: 486	n:1730000
FANCD2   1730000 perm   1657 sec   (1044 perm/sec)   p_kst 2.809249e-04   p_cons 8.034538e-01   p_joint 5.676301e-04

Joint ci ratio: 1.245503e-01	ci left: 5.335234e-04	ci right 6.049375e-04	k: 989	n:1740000
Cons ci ratio: 1.469950e-03	ci left: 8.028340e-01	ci right 8.040156e-01	k: 1397960	n:1740000
KS ci ratio: 1.770626e-01	ci left: 2.566774e-04	ci right 3.070793e-04	k: 489	n:1740000
FANCD2   1740000 perm   1674 sec   (1040 perm/sec)   p_kst 2.810345e-04   p_cons 8.034253e-01   p_joint 5.683908e-04

Joint ci ratio: 1.242995e-01	ci left: 5.326893e-04	ci right 6.038375e-04	k: 993	n:1750000
Cons ci ratio: 1.465920e-03	ci left: 8.027978e-01	ci right 8.039761e-01	k: 1405928	n:1750000
KS ci ratio: 1.765230e-01	ci left: 2.568491e-04	ci right 3.071146e-04	k: 492	n:1750000
FANCD2   1750000 perm   1690 sec   (1035 perm/sec)   p_kst 2.811429e-04   p_cons 8.033874e-01   p_joint 5.674286e-04

Joint ci ratio: 1.238022e-01	ci left: 5.340671e-04	ci right 6.050930e-04	k: 1001	n:1760000
Cons ci ratio: 1.461676e-03	ci left: 8.028155e-01	ci right 8.039903e-01	k: 1413990	n:1760000
KS ci ratio: 1.758112e-01	ci left: 2.575623e-04	ci right 3.077425e-04	k: 496	n:1760000
FANCD2   1760000 perm   1706 sec   (1031 perm/sec)   p_kst 2.818182e-04   p_cons 8.034034e-01   p_joint 5.687500e-04

Joint ci ratio: 1.232498e-01	ci left: 5.359774e-04	ci right 6.069162e-04	k: 1010	n:1770000
Cons ci ratio: 1.457413e-03	ci left: 8.028448e-01	ci right 8.040163e-01	k: 1422073	n:1770000
KS ci ratio: 1.751078e-01	ci left: 2.582678e-04	ci right 3.083628e-04	k: 500	n:1770000
FANCD2   1770000 perm   1723 sec   (1027 perm/sec)   p_kst 2.824859e-04   p_cons 8.034311e-01   p_joint 5.706215e-04

Joint ci ratio: 1.227650e-01	ci left: 5.373224e-04	ci right 6.081391e-04	k: 1018	n:1780000
Cons ci ratio: 1.453557e-03	ci left: 8.027934e-01	ci right 8.039617e-01	k: 1430013	n:1780000
KS ci ratio: 1.742404e-01	ci left: 2.595030e-04	ci right 3.095621e-04	k: 505	n:1780000
FANCD2   1780000 perm   1740 sec   (1023 perm/sec)   p_kst 2.837079e-04   p_cons 8.033781e-01   p_joint 5.719101e-04

Joint ci ratio: 1.225248e-01	ci left: 5.364867e-04	ci right 6.070449e-04	k: 1022	n:1790000
Cons ci ratio: 1.449465e-03	ci left: 8.028008e-01	ci right 8.039658e-01	k: 1438057	n:1790000
KS ci ratio: 1.738971e-01	ci left: 2.591219e-04	ci right 3.089987e-04	k: 507	n:1790000
FANCD2   1790000 perm   1757 sec   (1019 perm/sec)   p_kst 2.832402e-04   p_cons 8.033838e-01   p_joint 5.709497e-04

Joint ci ratio: 1.221077e-01	ci left: 5.372761e-04	ci right 6.076802e-04	k: 1029	n:1800000
Cons ci ratio: 1.445428e-03	ci left: 8.028036e-01	ci right 8.039654e-01	k: 1446093	n:1800000
KS ci ratio: 1.730475e-01	ci left: 2.603396e-04	ci right 3.101803e-04	k: 512	n:1800000
FANCD2   1800000 perm   1774 sec   (1014 perm/sec)   p_kst 2.844444e-04   p_cons 8.033850e-01   p_joint 5.716667e-04

Joint ci ratio: 1.217536e-01	ci left: 5.375216e-04	ci right 6.077388e-04	k: 1035	n:1810000
Cons ci ratio: 1.441391e-03	ci left: 8.028136e-01	ci right 8.039722e-01	k: 1454142	n:1810000
KS ci ratio: 1.725437e-01	ci left: 2.604870e-04	ci right 3.101956e-04	k: 515	n:1810000
FANCD2   1810000 perm   1791 sec   (1011 perm/sec)   p_kst 2.845304e-04   p_cons 8.033934e-01   p_joint 5.718232e-04

Joint ci ratio: 1.214025e-01	ci left: 5.377646e-04	ci right 6.077965e-04	k: 1041	n:1820000
Cons ci ratio: 1.437391e-03	ci left: 8.028230e-01	ci right 8.039783e-01	k: 1462190	n:1820000
KS ci ratio: 1.715491e-01	ci left: 2.622105e-04	ci right 3.119297e-04	k: 521	n:1820000
FANCD2   1820000 perm   1808 sec   (1007 perm/sec)   p_kst 2.862637e-04   p_cons 8.034011e-01   p_joint 5.719780e-04

Joint ci ratio: 1.210545e-01	ci left: 5.380053e-04	ci right 6.078533e-04	k: 1047	n:1830000
Cons ci ratio: 1.433530e-03	ci left: 8.028087e-01	ci right 8.039609e-01	k: 1470195	n:1830000
KS ci ratio: 1.712214e-01	ci left: 2.618237e-04	ci right 3.113649e-04	k: 523	n:1830000
FANCD2   1830000 perm   1825 sec   (1003 perm/sec)   p_kst 2.857923e-04   p_cons 8.033852e-01   p_joint 5.721311e-04

Joint ci ratio: 1.207668e-01	ci left: 5.377165e-04	ci right 6.073493e-04	k: 1052	n:1840000
Cons ci ratio: 1.429710e-03	ci left: 8.027924e-01	ci right 8.039415e-01	k: 1478196	n:1840000
KS ci ratio: 1.707334e-01	ci left: 2.619614e-04	ci right 3.113729e-04	k: 526	n:1840000
FANCD2   1840000 perm   1842 sec   (999 perm/sec)   p_kst 2.858696e-04   p_cons 8.033674e-01   p_joint 5.717391e-04

Joint ci ratio: 1.205381e-01	ci left: 5.369068e-04	ci right 6.062937e-04	k: 1056	n:1850000
Cons ci ratio: 1.425930e-03	ci left: 8.027741e-01	ci right 8.039201e-01	k: 1486193	n:1850000
KS ci ratio: 1.704104e-01	ci left: 2.615803e-04	ci right 3.108170e-04	k: 528	n:1850000
FANCD2   1850000 perm   1860 sec   (994 perm/sec)   p_kst 2.854054e-04   p_cons 8.033476e-01   p_joint 5.708108e-04

Joint ci ratio: 1.203675e-01	ci left: 5.355845e-04	ci right 6.046956e-04	k: 1059	n:1860000
Cons ci ratio: 1.421986e-03	ci left: 8.027990e-01	ci right 8.039419e-01	k: 1494270	n:1860000
KS ci ratio: 1.699292e-01	ci left: 2.617182e-04	ci right 3.108275e-04	k: 531	n:1860000
FANCD2   1860000 perm   1877 sec   (991 perm/sec)   p_kst 2.854839e-04   p_cons 8.033710e-01   p_joint 5.693548e-04

Joint ci ratio: 1.199720e-01	ci left: 5.363513e-04	ci right 6.053177e-04	k: 1066	n:1870000
Cons ci ratio: 1.418255e-03	ci left: 8.027836e-01	ci right 8.039235e-01	k: 1502272	n:1870000
KS ci ratio: 1.694521e-01	ci left: 2.618548e-04	ci right 3.108376e-04	k: 534	n:1870000
FANCD2   1870000 perm   1895 sec   (987 perm/sec)   p_kst 2.855615e-04   p_cons 8.033540e-01   p_joint 5.700535e-04

Joint ci ratio: 1.276885e-01	ci left: 4.690654e-04	ci right 5.335533e-04	k: 941	n:1880000
Cons ci ratio: 1.414520e-03	ci left: 8.027758e-01	ci right 8.039126e-01	k: 1510288	n:1880000
KS ci ratio: 1.689790e-01	ci left: 2.619901e-04	ci right 3.108475e-04	k: 537	n:1880000
FANCD2   1880000 perm   1912 sec   (983 perm/sec)   p_kst 2.856383e-04   p_cons 8.033447e-01   p_joint 5.005319e-04

Joint ci ratio: 1.273509e-01	ci left: 4.691447e-04	ci right 5.334601e-04	k: 946	n:1890000
Cons ci ratio: 1.410753e-03	ci left: 8.027818e-01	ci right 8.039157e-01	k: 1518330	n:1890000
KS ci ratio: 1.683542e-01	ci left: 2.626310e-04	ci right 3.114084e-04	k: 541	n:1890000
FANCD2   1890000 perm   1930 sec   (979 perm/sec)   p_kst 2.862434e-04   p_cons 8.033492e-01   p_joint 5.005291e-04

Joint ci ratio: 1.270829e-01	ci left: 4.687138e-04	ci right 5.328246e-04	k: 950	n:1900000
Cons ci ratio: 1.407006e-03	ci left: 8.027899e-01	ci right 8.039207e-01	k: 1526376	n:1900000
KS ci ratio: 1.677364e-01	ci left: 2.632654e-04	ci right 3.119632e-04	k: 545	n:1900000
FANCD2   1900000 perm   1949 sec   (975 perm/sec)   p_kst 2.868421e-04   p_cons 8.033558e-01   p_joint 5.000000e-04

Joint ci ratio: 1.266838e-01	ci left: 4.693015e-04	ci right 5.332760e-04	k: 956	n:1910000
Cons ci ratio: 1.403231e-03	ci left: 8.028110e-01	ci right 8.039388e-01	k: 1534447	n:1910000
KS ci ratio: 1.671253e-01	ci left: 2.638936e-04	ci right 3.125118e-04	k: 549	n:1910000
FANCD2   1910000 perm   1968 sec   (971 perm/sec)   p_kst 2.874346e-04   p_cons 8.033754e-01   p_joint 5.005236e-04

Joint ci ratio: 1.266178e-01	ci left: 4.673615e-04	ci right 5.310359e-04	k: 957	n:1920000
Cons ci ratio: 1.399493e-03	ci left: 8.028304e-01	ci right 8.039552e-01	k: 1542515	n:1920000
KS ci ratio: 1.669736e-01	ci left: 2.630182e-04	ci right 3.114267e-04	k: 550	n:1920000
FANCD2   1920000 perm   1986 sec   (967 perm/sec)   p_kst 2.864583e-04   p_cons 8.033932e-01   p_joint 4.984375e-04

Joint ci ratio: 1.262231e-01	ci left: 4.679504e-04	ci right 5.314915e-04	k: 963	n:1930000
Cons ci ratio: 1.395897e-03	ci left: 8.028241e-01	ci right 8.039460e-01	k: 1550534	n:1930000
KS ci ratio: 1.665209e-01	ci left: 2.631449e-04	ci right 3.114323e-04	k: 553	n:1930000
FANCD2   1930000 perm   2004 sec   (963 perm/sec)   p_kst 2.865285e-04   p_cons 8.033855e-01   p_joint 4.989637e-04

Joint ci ratio: 1.260272e-01	ci left: 4.670359e-04	ci right 5.303470e-04	k: 966	n:1940000
Cons ci ratio: 1.392205e-03	ci left: 8.028457e-01	ci right 8.039647e-01	k: 1558607	n:1940000
KS ci ratio: 1.663709e-01	ci left: 2.622825e-04	ci right 3.103639e-04	k: 554	n:1940000
FANCD2   1940000 perm   2021 sec   (960 perm/sec)   p_kst 2.855670e-04   p_cons 8.034057e-01   p_joint 4.979381e-04

Joint ci ratio: 1.171511e-01	ci left: 5.402231e-04	ci right 6.079411e-04	k: 1118	n:1950000
Cons ci ratio: 1.388604e-03	ci left: 8.028533e-01	ci right 8.039694e-01	k: 1566653	n:1950000
KS ci ratio: 1.654787e-01	ci left: 2.638866e-04	ci right 3.119768e-04	k: 560	n:1950000
FANCD2   1950000 perm   2039 sec   (956 perm/sec)   p_kst 2.871795e-04   p_cons 8.034118e-01   p_joint 5.733333e-04

Joint ci ratio: 1.168902e-01	ci left: 5.399432e-04	ci right 6.074650e-04	k: 1123	n:1960000
Cons ci ratio: 1.385143e-03	ci left: 8.028352e-01	ci right 8.039485e-01	k: 1574649	n:1960000
KS ci ratio: 1.650380e-01	ci left: 2.640076e-04	ci right 3.119790e-04	k: 563	n:1960000
FANCD2   1960000 perm   2057 sec   (953 perm/sec)   p_kst 2.872449e-04   p_cons 8.033923e-01   p_joint 5.729592e-04

Joint ci ratio: 1.166311e-01	ci left: 5.396663e-04	ci right 6.069936e-04	k: 1128	n:1970000
Cons ci ratio: 1.381753e-03	ci left: 8.028067e-01	ci right 8.039173e-01	k: 1582624	n:1970000
KS ci ratio: 1.647462e-01	ci left: 2.636408e-04	ci right 3.114524e-04	k: 565	n:1970000
FANCD2   1970000 perm   2075 sec   (949 perm/sec)   p_kst 2.868020e-04   p_cons 8.033624e-01   p_joint 5.725888e-04

Joint ci ratio: 1.165281e-01	ci left: 5.379214e-04	ci right 6.049675e-04	k: 1130	n:1980000
Cons ci ratio: 1.378202e-03	ci left: 8.028215e-01	ci right 8.039292e-01	k: 1590684	n:1980000
KS ci ratio: 1.647463e-01	ci left: 2.623092e-04	ci right 3.098794e-04	k: 565	n:1980000
FANCD2   1980000 perm   2093 sec   (946 perm/sec)   p_kst 2.853535e-04   p_cons 8.033758e-01   p_joint 5.707071e-04

Joint ci ratio: 1.161691e-01	ci left: 5.386335e-04	ci right 6.055474e-04	k: 1137	n:1990000
Cons ci ratio: 1.374907e-03	ci left: 8.027832e-01	ci right 8.038882e-01	k: 1598639	n:1990000
KS ci ratio: 1.644560e-01	ci left: 2.619547e-04	ci right 3.093687e-04	k: 567	n:1990000
FANCD2   1990000 perm   2112 sec   (942 perm/sec)   p_kst 2.849246e-04   p_cons 8.033362e-01   p_joint 5.713568e-04

Joint ci ratio: 1.175203e-01	ci left: 5.233200e-04	ci right 5.891402e-04	k: 1111	n:2000000
Cons ci ratio: 1.371566e-03	ci left: 8.027614e-01	ci right 8.038637e-01	k: 1606626	n:2000000
KS ci ratio: 1.640234e-01	ci left: 2.620833e-04	ci right 3.093834e-04	k: 570	n:2000000
FANCD2   2000000 perm   2131 sec   (939 perm/sec)   p_kst 2.850000e-04   p_cons 8.033130e-01   p_joint 5.555000e-04

Joint ci ratio: 1.255100e-01	ci left: 4.546257e-04	ci right 5.159827e-04	k: 974	n:2010000
Cons ci ratio: 1.368214e-03	ci left: 8.027478e-01	ci right 8.038474e-01	k: 1614629	n:2010000
KS ci ratio: 1.635942e-01	ci left: 2.622108e-04	ci right 3.093979e-04	k: 573	n:2010000
FANCD2   2010000 perm   2150 sec   (935 perm/sec)   p_kst 2.850746e-04   p_cons 8.032980e-01   p_joint 4.845771e-04

Joint ci ratio: 1.251255e-01	ci left: 4.552522e-04	ci right 5.164916e-04	k: 980	n:2020000
Cons ci ratio: 1.364811e-03	ci left: 8.027521e-01	ci right 8.038490e-01	k: 1622668	n:2020000
KS ci ratio: 1.630271e-01	ci left: 2.628120e-04	ci right 3.099272e-04	k: 577	n:2020000
FANCD2   2020000 perm   2168 sec   (932 perm/sec)   p_kst 2.856436e-04   p_cons 8.033010e-01   p_joint 4.851485e-04

Joint ci ratio: 1.248079e-01	ci left: 4.553957e-04	ci right 5.164874e-04	k: 985	n:2030000
Cons ci ratio: 1.361447e-03	ci left: 8.027530e-01	ci right 8.038471e-01	k: 1630700	n:2030000
KS ci ratio: 1.627458e-01	ci left: 2.624624e-04	ci right 3.094259e-04	k: 579	n:2030000
FANCD2   2030000 perm   2187 sec   (928 perm/sec)   p_kst 2.852217e-04   p_cons 8.033005e-01   p_joint 4.852217e-04

Joint ci ratio: 1.245555e-01	ci left: 4.550630e-04	ci right 5.159775e-04	k: 989	n:2040000
Cons ci ratio: 1.358216e-03	ci left: 8.027288e-01	ci right 8.038203e-01	k: 1638681	n:2040000
KS ci ratio: 1.623266e-01	ci left: 2.625866e-04	ci right 3.094394e-04	k: 582	n:2040000
FANCD2   2040000 perm   2205 sec   (925 perm/sec)   p_kst 2.852941e-04   p_cons 8.032750e-01   p_joint 4.848039e-04

Joint ci ratio: 1.243047e-01	ci left: 4.547336e-04	ci right 5.154724e-04	k: 993	n:2050000
Cons ci ratio: 1.354735e-03	ci left: 8.027684e-01	ci right 8.038571e-01	k: 1646792	n:2050000
KS ci ratio: 1.619105e-01	ci left: 2.627097e-04	ci right 3.094527e-04	k: 585	n:2050000
FANCD2   2050000 perm   2224 sec   (922 perm/sec)   p_kst 2.853659e-04   p_cons 8.033132e-01   p_joint 4.843902e-04

Joint ci ratio: 1.241799e-01	ci left: 4.534669e-04	ci right 5.139712e-04	k: 995	n:2060000
Cons ci ratio: 1.351406e-03	ci left: 8.027784e-01	ci right 8.038645e-01	k: 1654843	n:2060000
KS ci ratio: 1.614977e-01	ci left: 2.628318e-04	ci right 3.094657e-04	k: 588	n:2060000
FANCD2   2060000 perm   2243 sec   (918 perm/sec)   p_kst 2.854369e-04   p_cons 8.033218e-01   p_joint 4.830097e-04

Joint ci ratio: 1.239934e-01	ci left: 4.526805e-04	ci right 5.129825e-04	k: 998	n:2070000
Cons ci ratio: 1.348169e-03	ci left: 8.027723e-01	ci right 8.038558e-01	k: 1662861	n:2070000
KS ci ratio: 1.606812e-01	ci left: 2.643438e-04	ci right 3.109859e-04	k: 594	n:2070000
FANCD2   2070000 perm   2262 sec   (915 perm/sec)   p_kst 2.869565e-04   p_cons 8.033145e-01   p_joint 4.821256e-04

Joint ci ratio: 1.237459e-01	ci left: 4.523676e-04	ci right 5.124989e-04	k: 1002	n:2080000
Cons ci ratio: 1.344816e-03	ci left: 8.027991e-01	ci right 8.038799e-01	k: 1670947	n:2080000
KS ci ratio: 1.605464e-01	ci left: 2.635344e-04	ci right 3.099909e-04	k: 595	n:2080000
FANCD2   2080000 perm   2281 sec   (912 perm/sec)   p_kst 2.860577e-04   p_cons 8.033399e-01   p_joint 4.817308e-04

Joint ci ratio: 1.234386e-01	ci left: 4.525216e-04	ci right 5.125130e-04	k: 1007	n:2090000
Cons ci ratio: 1.341616e-03	ci left: 8.027954e-01	ci right 8.038736e-01	k: 1678970	n:2090000
KS ci ratio: 1.601439e-01	ci left: 2.636512e-04	ci right 3.100007e-04	k: 598	n:2090000
FANCD2   2090000 perm   2300 sec   (909 perm/sec)   p_kst 2.861244e-04   p_cons 8.033349e-01   p_joint 4.818182e-04

Joint ci ratio: 1.231944e-01	ci left: 4.522127e-04	ci right 5.120359e-04	k: 1011	n:2100000
Cons ci ratio: 1.338522e-03	ci left: 8.027722e-01	ci right 8.038479e-01	k: 1686952	n:2100000
KS ci ratio: 1.597443e-01	ci left: 2.637672e-04	ci right 3.100102e-04	k: 601	n:2100000
FANCD2   2100000 perm   2318 sec   (906 perm/sec)   p_kst 2.861905e-04   p_cons 8.033105e-01   p_joint 4.814286e-04

Joint ci ratio: 1.231337e-01	ci left: 4.505288e-04	ci right 5.100978e-04	k: 1012	n:2110000
Cons ci ratio: 1.335372e-03	ci left: 8.027673e-01	ci right 8.038404e-01	k: 1694972	n:2110000
KS ci ratio: 1.597444e-01	ci left: 2.625171e-04	ci right 3.085409e-04	k: 601	n:2110000
FANCD2   2110000 perm   2337 sec   (903 perm/sec)   p_kst 2.848341e-04   p_cons 8.033043e-01   p_joint 4.796209e-04

Joint ci ratio: 1.228309e-01	ci left: 4.506896e-04	ci right 5.101227e-04	k: 1017	n:2120000
Cons ci ratio: 1.332287e-03	ci left: 8.027525e-01	ci right 8.038231e-01	k: 1702971	n:2120000
KS ci ratio: 1.597445e-01	ci left: 2.612788e-04	ci right 3.070856e-04	k: 601	n:2120000
FANCD2   2120000 perm   2356 sec   (900 perm/sec)   p_kst 2.834906e-04   p_cons 8.032882e-01   p_joint 4.797170e-04

Joint ci ratio: 1.227105e-01	ci left: 4.494838e-04	ci right 5.086955e-04	k: 1019	n:2130000
Cons ci ratio: 1.329294e-03	ci left: 8.027209e-01	ci right 8.037891e-01	k: 1710934	n:2130000
KS ci ratio: 1.596121e-01	ci left: 2.605028e-04	ci right 3.061321e-04	k: 602	n:2130000
FANCD2   2130000 perm   2375 sec   (897 perm/sec)   p_kst 2.826291e-04   p_cons 8.032554e-01   p_joint 4.784038e-04

Joint ci ratio: 1.224707e-01	ci left: 4.491953e-04	ci right 5.082449e-04	k: 1023	n:2140000
Cons ci ratio: 1.326093e-03	ci left: 8.027439e-01	ci right 8.038095e-01	k: 1719013	n:2140000
KS ci ratio: 1.594800e-01	ci left: 2.597341e-04	ci right 3.051875e-04	k: 603	n:2140000
FANCD2   2140000 perm   2394 sec   (894 perm/sec)   p_kst 2.817757e-04   p_cons 8.032771e-01   p_joint 4.780374e-04

Joint ci ratio: 1.219950e-01	ci left: 4.507132e-04	ci right 5.097156e-04	k: 1031	n:2150000
Cons ci ratio: 1.323003e-03	ci left: 8.027457e-01	ci right 8.038089e-01	k: 1727047	n:2150000
KS ci ratio: 1.590854e-01	ci left: 2.598658e-04	ci right 3.052190e-04	k: 606	n:2150000
FANCD2   2150000 perm   2413 sec   (891 perm/sec)   p_kst 2.818605e-04   p_cons 8.032777e-01   p_joint 4.795349e-04

Joint ci ratio: 1.218181e-01	ci left: 4.499731e-04	ci right 5.087870e-04	k: 1034	n:2160000
Cons ci ratio: 1.319970e-03	ci left: 8.027391e-01	ci right 8.037999e-01	k: 1735063	n:2160000
KS ci ratio: 1.586937e-01	ci left: 2.599964e-04	ci right 3.052500e-04	k: 609	n:2160000
FANCD2   2160000 perm   2433 sec   (888 perm/sec)   p_kst 2.819444e-04   p_cons 8.032699e-01   p_joint 4.787037e-04

Joint ci ratio: 1.214665e-01	ci left: 4.505803e-04	ci right 5.092915e-04	k: 1040	n:2170000
Cons ci ratio: 1.316880e-03	ci left: 8.027511e-01	ci right 8.038094e-01	k: 1743119	n:2170000
KS ci ratio: 1.583049e-01	ci left: 2.601259e-04	ci right 3.052806e-04	k: 612	n:2170000
FANCD2   2170000 perm   2452 sec   (885 perm/sec)   p_kst 2.820276e-04   p_cons 8.032806e-01   p_joint 4.792627e-04

Joint ci ratio: 1.212919e-01	ci left: 4.498478e-04	ci right 5.083732e-04	k: 1043	n:2180000
Cons ci ratio: 1.313888e-03	ci left: 8.027446e-01	ci right 8.038005e-01	k: 1751135	n:2180000
KS ci ratio: 1.579189e-01	ci left: 2.602544e-04	ci right 3.053107e-04	k: 615	n:2180000
FANCD2   2180000 perm   2471 sec   (882 perm/sec)   p_kst 2.821101e-04   p_cons 8.032729e-01   p_joint 4.784404e-04

Joint ci ratio: 1.210602e-01	ci left: 4.495648e-04	ci right 5.079337e-04	k: 1047	n:2190000
Cons ci ratio: 1.310782e-03	ci left: 8.027706e-01	ci right 8.038240e-01	k: 1759222	n:2190000
KS ci ratio: 1.579191e-01	ci left: 2.590660e-04	ci right 3.039166e-04	k: 615	n:2190000
FANCD2   2190000 perm   2497 sec   (877 perm/sec)   p_kst 2.808219e-04   p_cons 8.032977e-01   p_joint 4.780822e-04

Joint ci ratio: 1.209449e-01	ci left: 4.484029e-04	ci right 5.065615e-04	k: 1049	n:2200000
Cons ci ratio: 1.307977e-03	ci left: 8.027291e-01	ci right 8.037801e-01	k: 1767161	n:2200000
KS ci ratio: 1.576633e-01	ci left: 2.587616e-04	ci right 3.034802e-04	k: 617	n:2200000
FANCD2   2200000 perm   2523 sec   (872 perm/sec)   p_kst 2.804545e-04   p_cons 8.032550e-01   p_joint 4.768182e-04

Joint ci ratio: 1.208300e-01	ci left: 4.472515e-04	ci right 5.052017e-04	k: 1051	n:2210000
Cons ci ratio: 1.305049e-03	ci left: 8.027219e-01	ci right 8.037706e-01	k: 1775175	n:2210000
KS ci ratio: 1.575360e-01	ci left: 2.580254e-04	ci right 3.025773e-04	k: 618	n:2210000
FANCD2   2210000 perm   2543 sec   (869 perm/sec)   p_kst 2.796380e-04   p_cons 8.032466e-01   p_joint 4.755656e-04

Joint ci ratio: 1.204868e-01	ci left: 4.478580e-04	ci right 5.057103e-04	k: 1057	n:2220000
Cons ci ratio: 1.302099e-03	ci left: 8.027246e-01	ci right 8.037710e-01	k: 1783211	n:2220000
KS ci ratio: 1.571556e-01	ci left: 2.581612e-04	ci right 3.026188e-04	k: 621	n:2220000
FANCD2   2220000 perm   2563 sec   (866 perm/sec)   p_kst 2.797297e-04   p_cons 8.032482e-01   p_joint 4.761261e-04

Joint ci ratio: 1.203164e-01	ci left: 4.471544e-04	ci right 5.048283e-04	k: 1060	n:2230000
Cons ci ratio: 1.299111e-03	ci left: 8.027418e-01	ci right 8.037857e-01	k: 1791279	n:2230000
KS ci ratio: 1.570295e-01	ci left: 2.574344e-04	ci right 3.017279e-04	k: 622	n:2230000
FANCD2   2230000 perm   2583 sec   (863 perm/sec)   p_kst 2.789238e-04   p_cons 8.032641e-01   p_joint 4.753363e-04

Joint ci ratio: 1.200903e-01	ci left: 4.468902e-04	ci right 5.044140e-04	k: 1064	n:2240000
Cons ci ratio: 1.296116e-03	ci left: 8.027654e-01	ci right 8.038070e-01	k: 1799362	n:2240000
KS ci ratio: 1.567781e-01	ci left: 2.571429e-04	ci right 3.013087e-04	k: 624	n:2240000
FANCD2   2240000 perm   2602 sec   (861 perm/sec)   p_kst 2.785714e-04   p_cons 8.032866e-01   p_joint 4.750000e-04

Joint ci ratio: 1.196417e-01	ci left: 4.483530e-04	ci right 5.058342e-04	k: 1072	n:2250000
Cons ci ratio: 1.293223e-03	ci left: 8.027689e-01	ci right 8.038081e-01	k: 1807400	n:2250000
KS ci ratio: 1.562788e-01	ci left: 2.577082e-04	ci right 3.018169e-04	k: 628	n:2250000
FANCD2   2250000 perm   2622 sec   (858 perm/sec)   p_kst 2.791111e-04   p_cons 8.032889e-01   p_joint 4.764444e-04

Joint ci ratio: 1.195861e-01	ci left: 4.467984e-04	ci right 5.040518e-04	k: 1073	n:2260000
Cons ci ratio: 1.290398e-03	ci left: 8.027603e-01	ci right 8.037973e-01	k: 1815411	n:2260000
KS ci ratio: 1.559074e-01	ci left: 2.578435e-04	ci right 3.018607e-04	k: 631	n:2260000
FANCD2   2260000 perm   2642 sec   (855 perm/sec)   p_kst 2.792035e-04   p_cons 8.032792e-01   p_joint 4.747788e-04

Joint ci ratio: 1.193640e-01	ci left: 4.465396e-04	ci right 5.036460e-04	k: 1077	n:2270000
Cons ci ratio: 1.287434e-03	ci left: 8.027907e-01	ci right 8.038253e-01	k: 1823510	n:2270000
KS ci ratio: 1.554163e-01	ci left: 2.584011e-04	ci right 3.023616e-04	k: 635	n:2270000
FANCD2   2270000 perm   2664 sec   (852 perm/sec)   p_kst 2.797357e-04   p_cons 8.033084e-01   p_joint 4.744493e-04

Joint ci ratio: 1.189783e-01	ci left: 4.475597e-04	ci right 5.045987e-04	k: 1084	n:2280000
Cons ci ratio: 1.284510e-03	ci left: 8.028159e-01	ci right 8.038482e-01	k: 1831598	n:2280000
KS ci ratio: 1.549298e-01	ci left: 2.589540e-04	ci right 3.028579e-04	k: 639	n:2280000
FANCD2   2280000 perm   2684 sec   (850 perm/sec)   p_kst 2.802632e-04   p_cons 8.033325e-01   p_joint 4.754386e-04

Joint ci ratio: 1.187596e-01	ci left: 4.473001e-04	ci right 5.041938e-04	k: 1088	n:2290000
Cons ci ratio: 1.281719e-03	ci left: 8.028130e-01	ci right 8.038430e-01	k: 1839622	n:2290000
KS ci ratio: 1.546883e-01	ci left: 2.586627e-04	ci right 3.024426e-04	k: 641	n:2290000
FANCD2   2290000 perm   2704 sec   (847 perm/sec)   p_kst 2.799127e-04   p_cons 8.033284e-01   p_joint 4.751092e-04

Joint ci ratio: 1.184338e-01	ci left: 4.478866e-04	ci right 5.046877e-04	k: 1094	n:2300000
Cons ci ratio: 1.278988e-03	ci left: 8.027996e-01	ci right 8.038275e-01	k: 1847622	n:2300000
KS ci ratio: 1.543282e-01	ci left: 2.587920e-04	ci right 3.024823e-04	k: 644	n:2300000
FANCD2   2300000 perm   2725 sec   (844 perm/sec)   p_kst 2.800000e-04   p_cons 8.033139e-01   p_joint 4.756522e-04

Joint ci ratio: 1.181106e-01	ci left: 4.484683e-04	ci right 5.051771e-04	k: 1100	n:2310000
Cons ci ratio: 1.276306e-03	ci left: 8.027786e-01	ci right 8.038042e-01	k: 1855604	n:2310000
KS ci ratio: 1.542087e-01	ci left: 2.580879e-04	ci right 3.016225e-04	k: 645	n:2310000
FANCD2   2310000 perm   2745 sec   (842 perm/sec)   p_kst 2.792208e-04   p_cons 8.032918e-01   p_joint 4.761905e-04

Joint ci ratio: 1.178433e-01	ci left: 4.486268e-04	ci right 5.052184e-04	k: 1105	n:2320000
Cons ci ratio: 1.273536e-03	ci left: 8.027836e-01	ci right 8.038070e-01	k: 1863646	n:2320000
KS ci ratio: 1.537335e-01	ci left: 2.586332e-04	ci right 3.021129e-04	k: 649	n:2320000
FANCD2   2320000 perm   2766 sec   (839 perm/sec)   p_kst 2.797414e-04   p_cons 8.032957e-01   p_joint 4.762931e-04

Joint ci ratio: 1.175249e-01	ci left: 4.492007e-04	ci right 5.057009e-04	k: 1111	n:2330000
Cons ci ratio: 1.270802e-03	ci left: 8.027843e-01	ci right 8.038055e-01	k: 1871678	n:2330000
KS ci ratio: 1.532626e-01	ci left: 2.591740e-04	ci right 3.025989e-04	k: 653	n:2330000
FANCD2   2330000 perm   2787 sec   (836 perm/sec)   p_kst 2.802575e-04   p_cons 8.032953e-01   p_joint 4.768240e-04

Joint ci ratio: 1.170521e-01	ci left: 4.510144e-04	ci right 5.074987e-04	k: 1120	n:2340000
Cons ci ratio: 1.267971e-03	ci left: 8.028136e-01	ci right 8.038326e-01	k: 1879777	n:2340000
KS ci ratio: 1.527960e-01	ci left: 2.597103e-04	ci right 3.030805e-04	k: 657	n:2340000
FANCD2   2340000 perm   2807 sec   (834 perm/sec)   p_kst 2.807692e-04   p_cons 8.033235e-01   p_joint 4.786325e-04

Joint ci ratio: 1.169479e-01	ci left: 4.499213e-04	ci right 5.062151e-04	k: 1122	n:2350000
Cons ci ratio: 1.265236e-03	ci left: 8.028231e-01	ci right 8.038399e-01	k: 1887830	n:2350000
KS ci ratio: 1.526801e-01	ci left: 2.590145e-04	ci right 3.022326e-04	k: 658	n:2350000
FANCD2   2350000 perm   2828 sec   (831 perm/sec)   p_kst 2.800000e-04   p_cons 8.033319e-01   p_joint 4.774468e-04

Joint ci ratio: 1.166884e-01	ci left: 4.500716e-04	ci right 5.062507e-04	k: 1127	n:2360000
Cons ci ratio: 1.262552e-03	ci left: 8.028245e-01	ci right 8.038392e-01	k: 1895864	n:2360000
KS ci ratio: 1.523337e-01	ci left: 2.591396e-04	ci right 3.022716e-04	k: 661	n:2360000
FANCD2   2360000 perm   2848 sec   (829 perm/sec)   p_kst 2.800847e-04   p_cons 8.033322e-01   p_joint 4.775424e-04

Joint ci ratio: 1.165851e-01	ci left: 4.489918e-04	ci right 5.049831e-04	k: 1129	n:2370000
Cons ci ratio: 1.259943e-03	ci left: 8.028111e-01	ci right 8.038236e-01	k: 1903863	n:2370000
KS ci ratio: 1.521042e-01	ci left: 2.588579e-04	ci right 3.018722e-04	k: 663	n:2370000
FANCD2   2370000 perm   2869 sec   (826 perm/sec)   p_kst 2.797468e-04   p_cons 8.033177e-01   p_joint 4.763713e-04

Joint ci ratio: 1.165337e-01	ci left: 4.475132e-04	ci right 5.032938e-04	k: 1130	n:2380000
Cons ci ratio: 1.257277e-03	ci left: 8.028163e-01	ci right 8.038267e-01	k: 1911906	n:2380000
KS ci ratio: 1.519898e-01	ci left: 2.581745e-04	ci right 3.010400e-04	k: 664	n:2380000
FANCD2   2380000 perm   2890 sec   (824 perm/sec)   p_kst 2.789916e-04   p_cons 8.033218e-01   p_joint 4.747899e-04

Joint ci ratio: 1.162258e-01	ci left: 4.480781e-04	ci right 5.037714e-04	k: 1136	n:2390000
Cons ci ratio: 1.254636e-03	ci left: 8.028193e-01	ci right 8.038276e-01	k: 1919944	n:2390000
KS ci ratio: 1.517618e-01	ci left: 2.578993e-04	ci right 3.006490e-04	k: 666	n:2390000
FANCD2   2390000 perm   2911 sec   (821 perm/sec)   p_kst 2.786611e-04   p_cons 8.033238e-01   p_joint 4.753138e-04

Joint ci ratio: 1.160219e-01	ci left: 4.478294e-04	ci right 5.033874e-04	k: 1140	n:2400000
Cons ci ratio: 1.252112e-03	ci left: 8.027969e-01	ci right 8.038032e-01	k: 1927921	n:2400000
KS ci ratio: 1.516482e-01	ci left: 2.572255e-04	ci right 2.998288e-04	k: 667	n:2400000
FANCD2   2400000 perm   2932 sec   (819 perm/sec)   p_kst 2.779167e-04   p_cons 8.033004e-01   p_joint 4.750000e-04

Joint ci ratio: 1.155669e-01	ci left: 4.495975e-04	ci right 5.051412e-04	k: 1149	n:2410000
Cons ci ratio: 1.249466e-03	ci left: 8.028096e-01	ci right 8.038137e-01	k: 1935982	n:2410000
KS ci ratio: 1.514217e-01	ci left: 2.569566e-04	ci right 2.994460e-04	k: 669	n:2410000
FANCD2   2410000 perm   2953 sec   (816 perm/sec)   p_kst 2.775934e-04   p_cons 8.033120e-01   p_joint 4.767635e-04

Joint ci ratio: 1.151669e-01	ci left: 4.509501e-04	ci right 5.064550e-04	k: 1157	n:2420000
Cons ci ratio: 1.246901e-03	ci left: 8.028056e-01	ci right 8.038077e-01	k: 1944003	n:2420000
KS ci ratio: 1.508598e-01	ci left: 2.578828e-04	ci right 3.003528e-04	k: 674	n:2420000
FANCD2   2420000 perm   2974 sec   (814 perm/sec)   p_kst 2.785124e-04   p_cons 8.033070e-01   p_joint 4.780992e-04

Joint ci ratio: 1.146727e-01	ci left: 4.530913e-04	ci right 5.086042e-04	k: 1167	n:2430000
Cons ci ratio: 1.244328e-03	ci left: 8.028079e-01	ci right 8.038079e-01	k: 1952039	n:2430000
KS ci ratio: 1.500835e-01	ci left: 2.595938e-04	ci right 3.021058e-04	k: 681	n:2430000
FANCD2   2430000 perm   2995 sec   (811 perm/sec)   p_kst 2.802469e-04   p_cons 8.033082e-01   p_joint 4.802469e-04

Joint ci ratio: 1.144769e-01	ci left: 4.528267e-04	ci right 5.082061e-04	k: 1171	n:2440000
Cons ci ratio: 1.241819e-03	ci left: 8.027978e-01	ci right 8.037957e-01	k: 1960045	n:2440000
KS ci ratio: 1.496452e-01	ci left: 2.601077e-04	ci right 3.025685e-04	k: 685	n:2440000
FANCD2   2440000 perm   3017 sec   (809 perm/sec)   p_kst 2.807377e-04   p_cons 8.032971e-01   p_joint 4.799180e-04

Joint ci ratio: 1.143307e-01	ci left: 4.521679e-04	ci right 5.073913e-04	k: 1174	n:2450000
Cons ci ratio: 1.239305e-03	ci left: 8.027931e-01	ci right 8.037890e-01	k: 1968064	n:2450000
KS ci ratio: 1.495363e-01	ci left: 2.594389e-04	ci right 3.017569e-04	k: 686	n:2450000
FANCD2   2450000 perm   3039 sec   (806 perm/sec)   p_kst 2.800000e-04   p_cons 8.032914e-01   p_joint 4.791837e-04

Joint ci ratio: 1.139916e-01	ci left: 4.530941e-04	ci right 5.082555e-04	k: 1181	n:2460000
Cons ci ratio: 1.236670e-03	ci left: 8.028231e-01	ci right 8.038169e-01	k: 1976168	n:2460000
KS ci ratio: 1.492109e-01	ci left: 2.595583e-04	ci right 3.017953e-04	k: 689	n:2460000
FANCD2   2460000 perm   3060 sec   (804 perm/sec)   p_kst 2.800813e-04   p_cons 8.033203e-01   p_joint 4.800813e-04

Joint ci ratio: 1.137513e-01	ci left: 4.532263e-04	ci right 5.082797e-04	k: 1186	n:2470000
Cons ci ratio: 1.234155e-03	ci left: 8.028264e-01	ci right 8.038182e-01	k: 1984207	n:2470000
KS ci ratio: 1.489951e-01	ci left: 2.592869e-04	ci right 3.014134e-04	k: 691	n:2470000
FANCD2   2470000 perm   3081 sec   (802 perm/sec)   p_kst 2.797571e-04   p_cons 8.033227e-01   p_joint 4.801619e-04

Joint ci ratio: 1.134173e-01	ci left: 4.541412e-04	ci right 5.091329e-04	k: 1193	n:2480000
Cons ci ratio: 1.231604e-03	ci left: 8.028431e-01	ci right 8.038328e-01	k: 1992279	n:2480000
KS ci ratio: 1.485663e-01	ci left: 2.597943e-04	ci right 3.018709e-04	k: 695	n:2480000
FANCD2   2480000 perm   3103 sec   (799 perm/sec)   p_kst 2.802419e-04   p_cons 8.033383e-01   p_joint 4.810484e-04

Joint ci ratio: 1.130862e-01	ci left: 4.550490e-04	ci right 5.099790e-04	k: 1200	n:2490000
Cons ci ratio: 1.229088e-03	ci left: 8.028544e-01	ci right 8.038421e-01	k: 2000338	n:2490000
KS ci ratio: 1.479300e-01	ci left: 2.610712e-04	ci right 3.031575e-04	k: 701	n:2490000
FANCD2   2490000 perm   3125 sec   (797 perm/sec)   p_kst 2.815261e-04   p_cons 8.033486e-01   p_joint 4.819277e-04

Joint ci ratio: 1.128048e-01	ci left: 4.555610e-04	ci right 5.104069e-04	k: 1206	n:2500000
Cons ci ratio: 1.226606e-03	ci left: 8.028608e-01	ci right 8.038465e-01	k: 2008385	n:2500000
KS ci ratio: 1.474059e-01	ci left: 2.619530e-04	ci right 3.040187e-04	k: 706	n:2500000
FANCD2   2500000 perm   3147 sec   (794 perm/sec)   p_kst 2.824000e-04   p_cons 8.033540e-01   p_joint 4.824000e-04

Joint ci ratio: 1.125718e-01	ci left: 4.556819e-04	ci right 5.104215e-04	k: 1211	n:2510000
Cons ci ratio: 1.224073e-03	ci left: 8.028843e-01	ci right 8.038680e-01	k: 2016475	n:2510000
KS ci ratio: 1.469906e-01	ci left: 2.624443e-04	ci right 3.044598e-04	k: 710	n:2510000
FANCD2   2510000 perm   3170 sec   (792 perm/sec)   p_kst 2.828685e-04   p_cons 8.033765e-01   p_joint 4.824701e-04

Joint ci ratio: 1.124328e-01	ci left: 4.550306e-04	ci right 5.096200e-04	k: 1214	n:2520000
Cons ci ratio: 1.221602e-03	ci left: 8.028957e-01	ci right 8.038775e-01	k: 2024535	n:2520000
KS ci ratio: 1.465789e-01	ci left: 2.629319e-04	ci right 3.048971e-04	k: 714	n:2520000
FANCD2   2520000 perm   3191 sec   (790 perm/sec)   p_kst 2.833333e-04   p_cons 8.033869e-01   p_joint 4.817460e-04

Joint ci ratio: 1.122022e-01	ci left: 4.551528e-04	ci right 5.096375e-04	k: 1219	n:2530000
Cons ci ratio: 1.219269e-03	ci left: 8.028749e-01	ci right 8.038548e-01	k: 2032514	n:2530000
KS ci ratio: 1.461705e-01	ci left: 2.634158e-04	ci right 3.053309e-04	k: 718	n:2530000
FANCD2   2530000 perm   3213 sec   (787 perm/sec)   p_kst 2.837945e-04   p_cons 8.033652e-01   p_joint 4.818182e-04

Joint ci ratio: 1.121104e-01	ci left: 4.541262e-04	ci right 5.084405e-04	k: 1221	n:2540000
Cons ci ratio: 1.216960e-03	ci left: 8.028516e-01	ci right 8.038296e-01	k: 2040486	n:2540000
KS ci ratio: 1.461706e-01	ci left: 2.623787e-04	ci right 3.041288e-04	k: 718	n:2540000
FANCD2   2540000 perm   3236 sec   (785 perm/sec)   p_kst 2.826772e-04   p_cons 8.033409e-01   p_joint 4.807087e-04

Joint ci ratio: 1.118817e-01	ci left: 4.542511e-04	ci right 5.084623e-04	k: 1226	n:2550000
Cons ci ratio: 1.214578e-03	ci left: 8.028508e-01	ci right 8.038269e-01	k: 2048515	n:2550000
KS ci ratio: 1.459678e-01	ci left: 2.621054e-04	ci right 3.037491e-04	k: 720	n:2550000
FANCD2   2550000 perm   3259 sec   (783 perm/sec)   p_kst 2.823529e-04   p_cons 8.033392e-01   p_joint 4.807843e-04

Joint ci ratio: 1.115639e-01	ci left: 4.551347e-04	ci right 5.092869e-04	k: 1233	n:2560000
Cons ci ratio: 1.212155e-03	ci left: 8.028645e-01	ci right 8.038387e-01	k: 2056581	n:2560000
KS ci ratio: 1.458667e-01	ci left: 2.614579e-04	ci right 3.029675e-04	k: 721	n:2560000
FANCD2   2560000 perm   3282 sec   (780 perm/sec)   p_kst 2.816406e-04   p_cons 8.033520e-01   p_joint 4.816406e-04

Joint ci ratio: 1.113386e-01	ci left: 4.552550e-04	ci right 5.093050e-04	k: 1238	n:2570000
Cons ci ratio: 1.209801e-03	ci left: 8.028637e-01	ci right 8.038360e-01	k: 2064610	n:2570000
KS ci ratio: 1.454643e-01	ci left: 2.619403e-04	ci right 3.034017e-04	k: 725	n:2570000
FANCD2   2570000 perm   3305 sec   (778 perm/sec)   p_kst 2.821012e-04   p_cons 8.033502e-01   p_joint 4.817121e-04

Joint ci ratio: 1.112489e-01	ci left: 4.542441e-04	ci right 5.081277e-04	k: 1240	n:2580000
Cons ci ratio: 1.207376e-03	ci left: 8.028850e-01	ci right 8.038554e-01	k: 2072696	n:2580000
KS ci ratio: 1.450652e-01	ci left: 2.624190e-04	ci right 3.038324e-04	k: 729	n:2580000
FANCD2   2580000 perm   3328 sec   (775 perm/sec)   p_kst 2.825581e-04   p_cons 8.033705e-01   p_joint 4.806202e-04

Joint ci ratio: 1.111147e-01	ci left: 4.536163e-04	ci right 5.073563e-04	k: 1243	n:2590000
Cons ci ratio: 1.205119e-03	ci left: 8.028660e-01	ci right 8.038345e-01	k: 2080678	n:2590000
KS ci ratio: 1.449659e-01	ci left: 2.617779e-04	ci right 3.030594e-04	k: 730	n:2590000
FANCD2   2590000 perm   3350 sec   (773 perm/sec)   p_kst 2.818533e-04   p_cons 8.033506e-01   p_joint 4.799228e-04

Joint ci ratio: 1.108033e-01	ci left: 4.544893e-04	ci right 5.081719e-04	k: 1250	n:2600000
Cons ci ratio: 1.202849e-03	ci left: 8.028540e-01	ci right 8.038207e-01	k: 2088678	n:2600000
KS ci ratio: 1.446694e-01	ci left: 2.618831e-04	ci right 3.030894e-04	k: 733	n:2600000
FANCD2   2600000 perm   3373 sec   (771 perm/sec)   p_kst 2.819231e-04   p_cons 8.033377e-01   p_joint 4.807692e-04

Joint ci ratio: 1.106708e-01	ci left: 4.538655e-04	ci right 5.074062e-04	k: 1253	n:2610000
Cons ci ratio: 1.200580e-03	ci left: 8.028448e-01	ci right 8.038097e-01	k: 2096685	n:2610000
KS ci ratio: 1.446695e-01	ci left: 2.608797e-04	ci right 3.019282e-04	k: 733	n:2610000
FANCD2   2610000 perm   3395 sec   (769 perm/sec)   p_kst 2.808429e-04   p_cons 8.033276e-01   p_joint 4.800766e-04

Joint ci ratio: 1.103193e-01	ci left: 4.551023e-04	ci right 5.086073e-04	k: 1261	n:2620000
Cons ci ratio: 1.198341e-03	ci left: 8.028315e-01	ci right 8.037945e-01	k: 2104681	n:2620000
KS ci ratio: 1.441792e-01	ci left: 2.617234e-04	ci right 3.027531e-04	k: 738	n:2620000
FANCD2   2620000 perm   3417 sec   (767 perm/sec)   p_kst 2.816794e-04   p_cons 8.033134e-01   p_joint 4.812977e-04

Joint ci ratio: 1.102321e-01	ci left: 4.541113e-04	ci right 5.074548e-04	k: 1263	n:2630000
Cons ci ratio: 1.196049e-03	ci left: 8.028354e-01	ci right 8.037966e-01	k: 2112722	n:2630000
KS ci ratio: 1.440818e-01	ci left: 2.610948e-04	ci right 3.019959e-04	k: 739	n:2630000
FANCD2   2630000 perm   3439 sec   (765 perm/sec)   p_kst 2.809886e-04   p_cons 8.033163e-01   p_joint 4.802281e-04

Joint ci ratio: 1.097124e-01	ci left: 4.568116e-04	ci right 5.102031e-04	k: 1275	n:2640000
Cons ci ratio: 1.193765e-03	ci left: 8.028408e-01	ci right 8.038002e-01	k: 2120767	n:2640000
KS ci ratio: 1.432133e-01	ci left: 2.633924e-04	ci right 3.043835e-04	k: 748	n:2640000
FANCD2   2640000 perm   3461 sec   (763 perm/sec)   p_kst 2.833333e-04   p_cons 8.033208e-01   p_joint 4.829545e-04

Joint ci ratio: 1.094981e-01	ci left: 4.569229e-04	ci right 5.102163e-04	k: 1280	n:2650000
Cons ci ratio: 1.191458e-03	ci left: 8.028556e-01	ci right 8.038131e-01	k: 2128837	n:2650000
KS ci ratio: 1.429274e-01	ci left: 2.634900e-04	ci right 3.044074e-04	k: 751	n:2650000
FANCD2   2650000 perm   3484 sec   (761 perm/sec)   p_kst 2.833962e-04   p_cons 8.033347e-01   p_joint 4.830189e-04

Joint ci ratio: 1.094554e-01	ci left: 4.555708e-04	ci right 5.086844e-04	k: 1281	n:2660000
Cons ci ratio: 1.189334e-03	ci left: 8.028252e-01	ci right 8.037809e-01	k: 2136787	n:2660000
KS ci ratio: 1.427377e-01	ci left: 2.632245e-04	ci right 3.040418e-04	k: 753	n:2660000
FANCD2   2660000 perm   3507 sec   (759 perm/sec)   p_kst 2.830827e-04   p_cons 8.033034e-01   p_joint 4.815789e-04

Joint ci ratio: 1.092426e-01	ci left: 4.556860e-04	ci right 5.087031e-04	k: 1286	n:2670000
Cons ci ratio: 1.187087e-03	ci left: 8.028309e-01	ci right 8.037849e-01	k: 2144833	n:2670000
KS ci ratio: 1.422667e-01	ci left: 2.640445e-04	ci right 3.048424e-04	k: 758	n:2670000
FANCD2   2670000 perm   3529 sec   (757 perm/sec)   p_kst 2.838951e-04   p_cons 8.033082e-01   p_joint 4.816479e-04

Joint ci ratio: 1.091155e-01	ci left: 4.550745e-04	ci right 5.079549e-04	k: 1289	n:2680000
Cons ci ratio: 1.184911e-03	ci left: 8.028210e-01	ci right 8.037732e-01	k: 2152837	n:2680000
KS ci ratio: 1.422668e-01	ci left: 2.630593e-04	ci right 3.037049e-04	k: 758	n:2680000
FANCD2   2680000 perm   3552 sec   (755 perm/sec)   p_kst 2.828358e-04   p_cons 8.032974e-01   p_joint 4.809701e-04

Joint ci ratio: 1.088626e-01	ci left: 4.555524e-04	ci right 5.083578e-04	k: 1295	n:2690000
Cons ci ratio: 1.182785e-03	ci left: 8.028007e-01	ci right 8.037511e-01	k: 2160813	n:2690000
KS ci ratio: 1.420798e-01	ci left: 2.627984e-04	ci right 3.033459e-04	k: 760	n:2690000
FANCD2   2690000 perm   3575 sec   (752 perm/sec)   p_kst 2.825279e-04   p_cons 8.032762e-01   p_joint 4.814126e-04

Joint ci ratio: 1.086115e-01	ci left: 4.560270e-04	ci right 5.087577e-04	k: 1301	n:2700000
Cons ci ratio: 1.180685e-03	ci left: 8.027768e-01	ci right 8.037255e-01	k: 2168779	n:2700000
KS ci ratio: 1.419866e-01	ci left: 2.621823e-04	ci right 3.026059e-04	k: 761	n:2700000
FANCD2   2700000 perm   3599 sec   (750 perm/sec)   p_kst 2.818519e-04   p_cons 8.032515e-01   p_joint 4.818519e-04

Joint ci ratio: 1.084035e-01	ci left: 4.561392e-04	ci right 5.087754e-04	k: 1306	n:2710000
Cons ci ratio: 1.178502e-03	ci left: 8.027786e-01	ci right 8.037256e-01	k: 2176814	n:2710000
KS ci ratio: 1.418935e-01	ci left: 2.615707e-04	ci right 3.018714e-04	k: 762	n:2710000
FANCD2   2710000 perm   3622 sec   (748 perm/sec)   p_kst 2.811808e-04   p_cons 8.032524e-01   p_joint 4.819188e-04

Joint ci ratio: 1.082794e-01	ci left: 4.555352e-04	ci right 5.080377e-04	k: 1309	n:2720000
Cons ci ratio: 1.176337e-03	ci left: 8.027785e-01	ci right 8.037238e-01	k: 2184844	n:2720000
KS ci ratio: 1.415230e-01	ci left: 2.620275e-04	ci right 3.022842e-04	k: 766	n:2720000
FANCD2   2720000 perm   3645 sec   (746 perm/sec)   p_kst 2.816176e-04   p_cons 8.032515e-01   p_joint 4.812500e-04

Joint ci ratio: 1.079912e-01	ci left: 4.563614e-04	ci right 5.088102e-04	k: 1316	n:2730000
Cons ci ratio: 1.174169e-03	ci left: 8.027825e-01	ci right 8.037260e-01	k: 2192885	n:2730000
KS ci ratio: 1.409726e-01	ci left: 2.631878e-04	ci right 3.034524e-04	k: 772	n:2730000
FANCD2   2730000 perm   3668 sec   (744 perm/sec)   p_kst 2.827839e-04   p_cons 8.032546e-01   p_joint 4.820513e-04

Joint ci ratio: 1.078684e-01	ci left: 4.557612e-04	ci right 5.080777e-04	k: 1319	n:2740000
Cons ci ratio: 1.172030e-03	ci left: 8.027817e-01	ci right 8.037235e-01	k: 2200913	n:2740000
KS ci ratio: 1.408816e-01	ci left: 2.625794e-04	ci right 3.027227e-04	k: 773	n:2740000
FANCD2   2740000 perm   3692 sec   (742 perm/sec)   p_kst 2.821168e-04   p_cons 8.032529e-01   p_joint 4.813869e-04

Joint ci ratio: 1.076647e-01	ci left: 4.558730e-04	ci right 5.080973e-04	k: 1324	n:2750000
Cons ci ratio: 1.169885e-03	ci left: 8.027860e-01	ci right 8.037261e-01	k: 2208955	n:2750000
KS ci ratio: 1.407907e-01	ci left: 2.619754e-04	ci right 3.019983e-04	k: 774	n:2750000
FANCD2   2750000 perm   3716 sec   (740 perm/sec)   p_kst 2.814545e-04   p_cons 8.032564e-01   p_joint 4.814545e-04

Joint ci ratio: 1.075431e-01	ci left: 4.552790e-04	ci right 5.073726e-04	k: 1327	n:2760000
Cons ci ratio: 1.167665e-03	ci left: 8.028135e-01	ci right 8.037518e-01	k: 2217061	n:2760000
KS ci ratio: 1.407908e-01	ci left: 2.610262e-04	ci right 3.009042e-04	k: 774	n:2760000
FANCD2   2760000 perm   3740 sec   (738 perm/sec)   p_kst 2.804348e-04   p_cons 8.032830e-01   p_joint 4.807971e-04

Joint ci ratio: 1.071804e-01	ci left: 4.567973e-04	ci right 5.088772e-04	k: 1336	n:2770000
Cons ci ratio: 1.165585e-03	ci left: 8.028065e-01	ci right 8.037431e-01	k: 2225072	n:2770000
KS ci ratio: 1.404288e-01	ci left: 2.614771e-04	ci right 3.013127e-04	k: 778	n:2770000
FANCD2   2770000 perm   3764 sec   (736 perm/sec)   p_kst 2.808664e-04   p_cons 8.032751e-01   p_joint 4.823105e-04

Joint ci ratio: 1.071004e-01	ci left: 4.558542e-04	ci right 5.077854e-04	k: 1338	n:2780000
Cons ci ratio: 1.163418e-03	ci left: 8.028258e-01	ci right 8.037607e-01	k: 2233156	n:2780000
KS ci ratio: 1.403388e-01	ci left: 2.608836e-04	ci right 3.006012e-04	k: 779	n:2780000
FANCD2   2780000 perm   3788 sec   (734 perm/sec)   p_kst 2.802158e-04   p_cons 8.032935e-01   p_joint 4.812950e-04

Joint ci ratio: 1.069807e-01	ci left: 4.552668e-04	ci right 5.070694e-04	k: 1341	n:2790000
Cons ci ratio: 1.161370e-03	ci left: 8.028162e-01	ci right 8.037495e-01	k: 2241160	n:2790000
KS ci ratio: 1.401592e-01	ci left: 2.606402e-04	ci right 3.002657e-04	k: 781	n:2790000
FANCD2   2790000 perm   3811 sec   (732 perm/sec)   p_kst 2.799283e-04   p_cons 8.032832e-01   p_joint 4.806452e-04

Joint ci ratio: 1.066631e-01	ci left: 4.564217e-04	ci right 5.081919e-04	k: 1349	n:2800000
Cons ci ratio: 1.159215e-03	ci left: 8.028386e-01	ci right 8.037701e-01	k: 2249253	n:2800000
KS ci ratio: 1.398912e-01	ci left: 2.607433e-04	ci right 3.003023e-04	k: 784	n:2800000
FANCD2   2800000 perm   3835 sec   (730 perm/sec)   p_kst 2.800000e-04   p_cons 8.033046e-01   p_joint 4.817857e-04

Joint ci ratio: 1.063876e-01	ci left: 4.572222e-04	ci right 5.089408e-04	k: 1356	n:2810000
Cons ci ratio: 1.157127e-03	ci left: 8.028458e-01	ci right 8.037757e-01	k: 2257304	n:2810000
KS ci ratio: 1.393595e-01	ci left: 2.618760e-04	ci right 3.014433e-04	k: 790	n:2810000
FANCD2   2810000 perm   3860 sec   (728 perm/sec)   p_kst 2.811388e-04   p_cons 8.033110e-01   p_joint 4.825623e-04

Joint ci ratio: 1.061922e-01	ci left: 4.573267e-04	ci right 5.089562e-04	k: 1361	n:2820000
Cons ci ratio: 1.155073e-03	ci left: 8.028469e-01	ci right 8.037751e-01	k: 2265338	n:2820000
KS ci ratio: 1.389211e-01	ci left: 2.626587e-04	ci right 3.022091e-04	k: 795	n:2820000
FANCD2   2820000 perm   3884 sec   (726 perm/sec)   p_kst 2.819149e-04   p_cons 8.033113e-01   p_joint 4.826241e-04

Joint ci ratio: 1.059203e-01	ci left: 4.581186e-04	ci right 5.096969e-04	k: 1368	n:2830000
Cons ci ratio: 1.152964e-03	ci left: 8.028657e-01	ci right 8.037923e-01	k: 2273422	n:2830000
KS ci ratio: 1.386600e-01	ci left: 2.627538e-04	ci right 3.022381e-04	k: 798	n:2830000
FANCD2   2830000 perm   3909 sec   (724 perm/sec)   p_kst 2.819788e-04   p_cons 8.033293e-01   p_joint 4.833922e-04

Joint ci ratio: 1.056889e-01	ci left: 4.585623e-04	ci right 5.100707e-04	k: 1374	n:2840000
Cons ci ratio: 1.150848e-03	ci left: 8.028897e-01	ci right 8.038146e-01	k: 2281521	n:2840000
KS ci ratio: 1.384004e-01	ci left: 2.628484e-04	ci right 3.022668e-04	k: 801	n:2840000
FANCD2   2840000 perm   3934 sec   (722 perm/sec)   p_kst 2.820423e-04   p_cons 8.033525e-01   p_joint 4.838028e-04

Joint ci ratio: 1.053066e-01	ci left: 4.603695e-04	ci right 5.118823e-04	k: 1384	n:2850000
Cons ci ratio: 1.148781e-03	ci left: 8.029033e-01	ci right 8.038266e-01	k: 2289591	n:2850000
KS ci ratio: 1.382282e-01	ci left: 2.626036e-04	ci right 3.019322e-04	k: 803	n:2850000
FANCD2   2850000 perm   3958 sec   (720 perm/sec)   p_kst 2.817544e-04   p_cons 8.033653e-01   p_joint 4.856140e-04

Joint ci ratio: 1.051170e-01	ci left: 4.604621e-04	ci right 5.118867e-04	k: 1389	n:2860000
Cons ci ratio: 1.146785e-03	ci left: 8.029004e-01	ci right 8.038220e-01	k: 2297614	n:2860000
KS ci ratio: 1.380566e-01	ci left: 2.623605e-04	ci right 3.016000e-04	k: 805	n:2860000
FANCD2   2860000 perm   3983 sec   (718 perm/sec)   p_kst 2.814685e-04   p_cons 8.033615e-01   p_joint 4.856643e-04

Joint ci ratio: 1.049661e-01	ci left: 4.602148e-04	ci right 5.115335e-04	k: 1393	n:2870000
Cons ci ratio: 1.144802e-03	ci left: 8.028965e-01	ci right 8.038165e-01	k: 2305634	n:2870000
KS ci ratio: 1.378857e-01	ci left: 2.621192e-04	ci right 3.012700e-04	k: 807	n:2870000
FANCD2   2870000 perm   4007 sec   (716 perm/sec)   p_kst 2.811847e-04   p_cons 8.033568e-01   p_joint 4.853659e-04

Joint ci ratio: 1.048909e-01	ci left: 4.592931e-04	ci right 5.104700e-04	k: 1395	n:2880000
Cons ci ratio: 1.142910e-03	ci left: 8.028703e-01	ci right 8.037888e-01	k: 2313590	n:2880000
KS ci ratio: 1.378005e-01	ci left: 2.615443e-04	ci right 3.005831e-04	k: 808	n:2880000
FANCD2   2880000 perm   4031 sec   (714 perm/sec)   p_kst 2.805556e-04   p_cons 8.033299e-01   p_joint 4.843750e-04

Joint ci ratio: 1.047036e-01	ci left: 4.593886e-04	ci right 5.104791e-04	k: 1400	n:2890000
Cons ci ratio: 1.140943e-03	ci left: 8.028679e-01	ci right 8.037848e-01	k: 2321614	n:2890000
KS ci ratio: 1.377154e-01	ci left: 2.609734e-04	ci right 2.999010e-04	k: 809	n:2890000
FANCD2   2890000 perm   4056 sec   (713 perm/sec)   p_kst 2.799308e-04   p_cons 8.033266e-01   p_joint 4.844291e-04

Joint ci ratio: 1.045545e-01	ci left: 4.591477e-04	ci right 5.101342e-04	k: 1404	n:2900000
Cons ci ratio: 1.138907e-03	ci left: 8.028872e-01	ci right 8.038025e-01	k: 2329701	n:2900000
KS ci ratio: 1.376305e-01	ci left: 2.604064e-04	ci right 2.992236e-04	k: 810	n:2900000
FANCD2   2900000 perm   4080 sec   (711 perm/sec)   p_kst 2.793103e-04   p_cons 8.033452e-01   p_joint 4.841379e-04

Joint ci ratio: 1.043319e-01	ci left: 4.595779e-04	ci right 5.104969e-04	k: 1410	n:2910000
Cons ci ratio: 1.136899e-03	ci left: 8.029020e-01	ci right 8.038156e-01	k: 2337775	n:2910000
KS ci ratio: 1.374612e-01	ci left: 2.601752e-04	ci right 2.989062e-04	k: 812	n:2910000
FANCD2   2910000 perm   4105 sec   (709 perm/sec)   p_kst 2.790378e-04   p_cons 8.033591e-01   p_joint 4.845361e-04

Joint ci ratio: 1.041108e-01	ci left: 4.600052e-04	ci right 5.108569e-04	k: 1416	n:2920000
Cons ci ratio: 1.134948e-03	ci left: 8.029032e-01	ci right 8.038153e-01	k: 2345810	n:2920000
KS ci ratio: 1.374612e-01	ci left: 2.592841e-04	ci right 2.978826e-04	k: 812	n:2920000
FANCD2   2920000 perm   4132 sec   (707 perm/sec)   p_kst 2.780822e-04   p_cons 8.033596e-01   p_joint 4.849315e-04

Joint ci ratio: 1.039642e-01	ci left: 4.597649e-04	ci right 5.105141e-04	k: 1420	n:2930000
Cons ci ratio: 1.133028e-03	ci left: 8.028990e-01	ci right 8.038096e-01	k: 2353829	n:2930000
KS ci ratio: 1.373768e-01	ci left: 2.587288e-04	ci right 2.972190e-04	k: 813	n:2930000
FANCD2   2930000 perm   4157 sec   (705 perm/sec)   p_kst 2.774744e-04   p_cons 8.033546e-01   p_joint 4.846416e-04

Joint ci ratio: 1.036727e-01	ci left: 4.608515e-04	ci right 5.115694e-04	k: 1428	n:2940000
Cons ci ratio: 1.131130e-03	ci left: 8.028911e-01	ci right 8.038001e-01	k: 2361837	n:2940000
KS ci ratio: 1.369568e-01	ci left: 2.594911e-04	ci right 2.979670e-04	k: 818	n:2940000
FANCD2   2940000 perm   4182 sec   (703 perm/sec)   p_kst 2.782313e-04   p_cons 8.033459e-01   p_joint 4.857143e-04

Joint ci ratio: 1.034196e-01	ci left: 4.616007e-04	ci right 5.122695e-04	k: 1435	n:2950000
Cons ci ratio: 1.129274e-03	ci left: 8.028744e-01	ci right 8.037819e-01	k: 2369819	n:2950000
KS ci ratio: 1.365406e-01	ci left: 2.602484e-04	ci right 2.987098e-04	k: 823	n:2950000
FANCD2   2950000 perm   4207 sec   (701 perm/sec)   p_kst 2.789831e-04   p_cons 8.033285e-01   p_joint 4.864407e-04

Joint ci ratio: 1.032401e-01	ci left: 4.616868e-04	ci right 5.122717e-04	k: 1440	n:2960000
Cons ci ratio: 1.127425e-03	ci left: 8.028582e-01	ci right 8.037642e-01	k: 2377802	n:2960000
KS ci ratio: 1.364578e-01	ci left: 2.596955e-04	ci right 2.980500e-04	k: 824	n:2960000
FANCD2   2960000 perm   4232 sec   (699 perm/sec)   p_kst 2.783784e-04   p_cons 8.033115e-01   p_joint 4.864865e-04

Joint ci ratio: 1.030258e-01	ci left: 4.621004e-04	ci right 5.126192e-04	k: 1446	n:2970000
Cons ci ratio: 1.125504e-03	ci left: 8.028650e-01	ci right 8.037694e-01	k: 2385853	n:2970000
KS ci ratio: 1.362928e-01	ci left: 2.594715e-04	ci right 2.977429e-04	k: 826	n:2970000
FANCD2   2970000 perm   4257 sec   (698 perm/sec)   p_kst 2.781145e-04   p_cons 8.033175e-01   p_joint 4.868687e-04

Joint ci ratio: 1.028128e-01	ci left: 4.625113e-04	ci right 5.129642e-04	k: 1452	n:2980000
Cons ci ratio: 1.123513e-03	ci left: 8.028942e-01	ci right 8.037971e-01	k: 2393971	n:2980000
KS ci ratio: 1.362105e-01	ci left: 2.589249e-04	ci right 2.970907e-04	k: 827	n:2980000
FANCD2   2980000 perm   4282 sec   (696 perm/sec)   p_kst 2.775168e-04   p_cons 8.033460e-01   p_joint 4.872483e-04

Joint ci ratio: 1.026364e-01	ci left: 4.625938e-04	ci right 5.129638e-04	k: 1457	n:2990000
Cons ci ratio: 1.121642e-03	ci left: 8.028925e-01	ci right 8.037939e-01	k: 2401997	n:2990000
KS ci ratio: 1.360463e-01	ci left: 2.587051e-04	ci right 2.967888e-04	k: 829	n:2990000
FANCD2   2990000 perm   4307 sec   (694 perm/sec)   p_kst 2.772575e-04   p_cons 8.033435e-01   p_joint 4.872910e-04

Joint ci ratio: 1.024608e-01	ci left: 4.626757e-04	ci right 5.129633e-04	k: 1462	n:3000000
Cons ci ratio: 1.119808e-03	ci left: 8.028828e-01	ci right 8.037827e-01	k: 2409999	n:3000000
KS ci ratio: 1.358011e-01	ci left: 2.588087e-04	ci right 2.968335e-04	k: 832	n:3000000
FANCD2   3000000 perm   4333 sec   (692 perm/sec)   p_kst 2.773333e-04   p_cons 8.033330e-01   p_joint 4.873333e-04

Joint ci ratio: 1.022514e-01	ci left: 4.630809e-04	ci right 5.133035e-04	k: 1468	n:3010000
Cons ci ratio: 1.117979e-03	ci left: 8.028741e-01	ci right 8.037725e-01	k: 2418004	n:3010000
KS ci ratio: 1.355572e-01	ci left: 2.589117e-04	ci right 2.968778e-04	k: 835	n:3010000
FANCD2   3010000 perm   4358 sec   (691 perm/sec)   p_kst 2.774086e-04   p_cons 8.033236e-01   p_joint 4.877076e-04

Joint ci ratio: 1.021124e-01	ci left: 4.628382e-04	ci right 5.129621e-04	k: 1472	n:3020000
Cons ci ratio: 1.116111e-03	ci left: 8.028794e-01	ci right 8.037763e-01	k: 2426051	n:3020000
KS ci ratio: 1.353953e-01	ci left: 2.586942e-04	ci right 2.965794e-04	k: 837	n:3020000
FANCD2   3020000 perm   4385 sec   (689 perm/sec)   p_kst 2.771523e-04   p_cons 8.033281e-01   p_joint 4.874172e-04

Joint ci ratio: 1.019396e-01	ci left: 4.629187e-04	ci right 5.129614e-04	k: 1477	n:3030000
Cons ci ratio: 1.114340e-03	ci left: 8.028596e-01	ci right 8.037550e-01	k: 2434022	n:3030000
KS ci ratio: 1.352341e-01	ci left: 2.584781e-04	ci right 2.962830e-04	k: 839	n:3030000
FANCD2   3030000 perm   4411 sec   (687 perm/sec)   p_kst 2.768977e-04   p_cons 8.033076e-01   p_joint 4.874587e-04

Joint ci ratio: 1.016990e-01	ci left: 4.636400e-04	ci right 5.136353e-04	k: 1484	n:3040000
Cons ci ratio: 1.112444e-03	ci left: 8.028777e-01	ci right 8.037717e-01	k: 2442108	n:3040000
KS ci ratio: 1.348333e-01	ci left: 2.592171e-04	ci right 2.970087e-04	k: 844	n:3040000
FANCD2   3040000 perm   4437 sec   (685 perm/sec)   p_kst 2.776316e-04   p_cons 8.033250e-01   p_joint 4.881579e-04

Joint ci ratio: 1.016306e-01	ci left: 4.627589e-04	ci right 5.126237e-04	k: 1486	n:3050000
Cons ci ratio: 1.110578e-03	ci left: 8.028902e-01	ci right 8.037827e-01	k: 2450177	n:3050000
KS ci ratio: 1.347537e-01	ci left: 2.586840e-04	ci right 2.963738e-04	k: 845	n:3050000
FANCD2   3050000 perm   4462 sec   (683 perm/sec)   p_kst 2.770492e-04   p_cons 8.033367e-01   p_joint 4.872131e-04

Joint ci ratio: 1.015283e-01	ci left: 4.622021e-04	ci right 5.119537e-04	k: 1489	n:3060000
Cons ci ratio: 1.108792e-03	ci left: 8.028823e-01	ci right 8.037733e-01	k: 2458184	n:3060000
KS ci ratio: 1.347537e-01	ci left: 2.578386e-04	ci right 2.954053e-04	k: 845	n:3060000
FANCD2   3060000 perm   4488 sec   (682 perm/sec)   p_kst 2.761438e-04   p_cons 8.033281e-01   p_joint 4.866013e-04

Joint ci ratio: 1.014263e-01	ci left: 4.616489e-04	ci right 5.112881e-04	k: 1492	n:3070000
Cons ci ratio: 1.106950e-03	ci left: 8.028930e-01	ci right 8.037826e-01	k: 2466248	n:3070000
KS ci ratio: 1.346742e-01	ci left: 2.573135e-04	ci right 2.947797e-04	k: 846	n:3070000
FANCD2   3070000 perm   4515 sec   (680 perm/sec)   p_kst 2.755700e-04   p_cons 8.033381e-01   p_joint 4.859935e-04

Joint ci ratio: 1.011556e-01	ci left: 4.626817e-04	ci right 5.122913e-04	k: 1500	n:3080000
Cons ci ratio: 1.105161e-03	ci left: 8.028910e-01	ci right 8.037792e-01	k: 2474273	n:3080000
KS ci ratio: 1.344363e-01	ci left: 2.574193e-04	ci right 2.948295e-04	k: 849	n:3080000
FANCD2   3080000 perm   4541 sec   (678 perm/sec)   p_kst 2.756494e-04   p_cons 8.033354e-01   p_joint 4.870130e-04

Joint ci ratio: 1.010547e-01	ci left: 4.621306e-04	ci right 5.116288e-04	k: 1503	n:3090000
Cons ci ratio: 1.103377e-03	ci left: 8.028900e-01	ci right 8.037767e-01	k: 2482301	n:3090000
KS ci ratio: 1.343573e-01	ci left: 2.568990e-04	ci right 2.942098e-04	k: 850	n:3090000
FANCD2   3090000 perm   4567 sec   (677 perm/sec)   p_kst 2.750809e-04   p_cons 8.033337e-01   p_joint 4.864078e-04

Joint ci ratio: 1.008871e-01	ci left: 4.622121e-04	ci right 5.116320e-04	k: 1508	n:3100000
Cons ci ratio: 1.101708e-03	ci left: 8.028587e-01	ci right 8.037440e-01	k: 2490235	n:3100000
KS ci ratio: 1.342785e-01	ci left: 2.563820e-04	ci right 2.935942e-04	k: 851	n:3100000
FANCD2   3100000 perm   4592 sec   (675 perm/sec)   p_kst 2.745161e-04   p_cons 8.033016e-01   p_joint 4.864516e-04

Joint ci ratio: 1.008204e-01	ci left: 4.613527e-04	ci right 5.106462e-04	k: 1510	n:3110000
Cons ci ratio: 1.099951e-03	ci left: 8.028549e-01	ci right 8.037388e-01	k: 2498254	n:3110000
KS ci ratio: 1.341212e-01	ci left: 2.561791e-04	ci right 2.933148e-04	k: 853	n:3110000
FANCD2   3110000 perm   4619 sec   (673 perm/sec)   p_kst 2.742765e-04   p_cons 8.032971e-01   p_joint 4.855305e-04

Joint ci ratio: 1.006208e-01	ci left: 4.617487e-04	ci right 5.109810e-04	k: 1516	n:3120000
Cons ci ratio: 1.098172e-03	ci left: 8.028598e-01	ci right 8.037422e-01	k: 2506300	n:3120000
KS ci ratio: 1.338862e-01	ci left: 2.562873e-04	ci right 2.933685e-04	k: 856	n:3120000
FANCD2   3120000 perm   4645 sec   (672 perm/sec)   p_kst 2.743590e-04   p_cons 8.033013e-01   p_joint 4.858974e-04

Joint ci ratio: 1.004223e-01	ci left: 4.621422e-04	ci right 5.113136e-04	k: 1522	n:3130000
Cons ci ratio: 1.096456e-03	ci left: 8.028490e-01	ci right 8.037300e-01	k: 2514297	n:3130000
KS ci ratio: 1.337303e-01	ci left: 2.560861e-04	ci right 2.930915e-04	k: 858	n:3130000
FANCD2   3130000 perm   4671 sec   (670 perm/sec)   p_kst 2.741214e-04   p_cons 8.032898e-01   p_joint 4.862620e-04

Joint ci ratio: 1.001596e-01	ci left: 4.631543e-04	ci right 5.122968e-04	k: 1530	n:3140000
Cons ci ratio: 1.094746e-03	ci left: 8.028389e-01	ci right 8.037185e-01	k: 2522296	n:3140000
KS ci ratio: 1.334200e-01	ci left: 2.565019e-04	ci right 2.934745e-04	k: 862	n:3140000
FANCD2   3140000 perm   4697 sec   (668 perm/sec)   p_kst 2.745223e-04   p_cons 8.032790e-01   p_joint 4.872611e-04

Joint ci ratio: 9.983399e-02	ci left: 4.647792e-04	ci right 5.139244e-04	k: 1540	n:3150000
Cons ci ratio: 1.093019e-03	ci left: 8.028361e-01	ci right 8.037144e-01	k: 2530318	n:3150000
KS ci ratio: 1.332657e-01	ci left: 2.563013e-04	ci right 2.931990e-04	k: 864	n:3150000
FANCD2   3150000 perm   4723 sec   (667 perm/sec)   p_kst 2.742857e-04   p_cons 8.032756e-01   p_joint 4.888889e-04

Joint ci ratio: 9.967242e-02	ci left: 4.648512e-04	ci right 5.139198e-04	k: 1545	n:3160000
Cons ci ratio: 1.091293e-03	ci left: 8.028353e-01	ci right 8.037122e-01	k: 2538346	n:3160000
KS ci ratio: 1.330352e-01	ci left: 2.564080e-04	ci right 2.932521e-04	k: 867	n:3160000
FANCD2   3160000 perm   4750 sec   (665 perm/sec)   p_kst 2.743671e-04   p_cons 8.032741e-01   p_joint 4.889241e-04

Joint ci ratio: 9.951163e-02	ci left: 4.649227e-04	ci right 5.139152e-04	k: 1550	n:3170000
Cons ci ratio: 1.089579e-03	ci left: 8.028336e-01	ci right 8.037091e-01	k: 2546371	n:3170000
KS ci ratio: 1.329586e-01	ci left: 2.559041e-04	ci right 2.926530e-04	k: 868	n:3170000
FANCD2   3170000 perm   4776 sec   (664 perm/sec)   p_kst 2.738170e-04   p_cons 8.032716e-01   p_joint 4.889590e-04

Joint ci ratio: 9.935161e-02	ci left: 4.649940e-04	ci right 5.139105e-04	k: 1555	n:3180000
Cons ci ratio: 1.087916e-03	ci left: 8.028192e-01	ci right 8.036934e-01	k: 2554356	n:3180000
KS ci ratio: 1.328822e-01	ci left: 2.554033e-04	ci right 2.920576e-04	k: 869	n:3180000
FANCD2   3180000 perm   4803 sec   (662 perm/sec)   p_kst 2.732704e-04   p_cons 8.032566e-01   p_joint 4.889937e-04

Joint ci ratio: 9.909714e-02	ci left: 4.659819e-04	ci right 5.148695e-04	k: 1563	n:3190000
Cons ci ratio: 1.086250e-03	ci left: 8.028081e-01	ci right 8.036810e-01	k: 2562351	n:3190000
KS ci ratio: 1.324263e-01	ci left: 2.564212e-04	ci right 2.930853e-04	k: 875	n:3190000
FANCD2   3190000 perm   4829 sec   (661 perm/sec)   p_kst 2.742947e-04   p_cons 8.032448e-01   p_joint 4.899687e-04

Joint ci ratio: 9.897068e-02	ci left: 4.657448e-04	ci right 5.145415e-04	k: 1567	n:3200000
Cons ci ratio: 1.084566e-03	ci left: 8.028046e-01	ci right 8.036761e-01	k: 2570370	n:3200000
KS ci ratio: 1.323508e-01	ci left: 2.559220e-04	ci right 2.924923e-04	k: 876	n:3200000
FANCD2   3200000 perm   4857 sec   (659 perm/sec)   p_kst 2.737500e-04   p_cons 8.032406e-01   p_joint 4.896875e-04

Joint ci ratio: 9.875047e-02	ci left: 4.664206e-04	ci right 5.151732e-04	k: 1574	n:3210000
Cons ci ratio: 1.082795e-03	ci left: 8.028289e-01	ci right 8.036989e-01	k: 2578478	n:3210000
KS ci ratio: 1.320500e-01	ci left: 2.563296e-04	ci right 2.928684e-04	k: 880	n:3210000
FANCD2   3210000 perm   4884 sec   (657 perm/sec)   p_kst 2.741433e-04   p_cons 8.032642e-01   p_joint 4.903427e-04

Joint ci ratio: 9.865658e-02	ci left: 4.658808e-04	ci right 5.145279e-04	k: 1577	n:3220000
Cons ci ratio: 1.081084e-03	ci left: 8.028377e-01	ci right 8.037064e-01	k: 2586537	n:3220000
KS ci ratio: 1.320501e-01	ci left: 2.555336e-04	ci right 2.919588e-04	k: 880	n:3220000
FANCD2   3220000 perm   4911 sec   (656 perm/sec)   p_kst 2.732919e-04   p_cons 8.032724e-01   p_joint 4.897516e-04

Joint ci ratio: 9.853179e-02	ci left: 4.656463e-04	ci right 5.142039e-04	k: 1581	n:3230000
Cons ci ratio: 1.079427e-03	ci left: 8.028332e-01	ci right 8.037006e-01	k: 2594553	n:3230000
KS ci ratio: 1.319005e-01	ci left: 2.553412e-04	ci right 2.916946e-04	k: 882	n:3230000
FANCD2   3230000 perm   4938 sec   (654 perm/sec)   p_kst 2.730650e-04   p_cons 8.032672e-01   p_joint 4.894737e-04

Joint ci ratio: 9.840747e-02	ci left: 4.654133e-04	ci right 5.138818e-04	k: 1585	n:3240000
Cons ci ratio: 1.077703e-03	ci left: 8.028507e-01	ci right 8.037167e-01	k: 2602640	n:3240000
KS ci ratio: 1.316027e-01	ci left: 2.557470e-04	ci right 2.920695e-04	k: 886	n:3240000
FANCD2   3240000 perm   4965 sec   (653 perm/sec)   p_kst 2.734568e-04   p_cons 8.032840e-01   p_joint 4.891975e-04

Joint ci ratio: 9.828363e-02	ci left: 4.651817e-04	ci right 5.135617e-04	k: 1589	n:3250000
Cons ci ratio: 1.076053e-03	ci left: 8.028486e-01	ci right 8.037133e-01	k: 2610664	n:3250000
KS ci ratio: 1.315286e-01	ci left: 2.552576e-04	ci right 2.914887e-04	k: 887	n:3250000
FANCD2   3250000 perm   4993 sec   (651 perm/sec)   p_kst 2.729231e-04   p_cons 8.032812e-01   p_joint 4.889231e-04

Joint ci ratio: 9.812946e-02	ci left: 4.652508e-04	ci right 5.135577e-04	k: 1594	n:3260000
Cons ci ratio: 1.074398e-03	ci left: 8.028503e-01	ci right 8.037136e-01	k: 2618700	n:3260000
KS ci ratio: 1.314546e-01	ci left: 2.547713e-04	ci right 2.909114e-04	k: 888	n:3260000
FANCD2   3260000 perm   5021 sec   (649 perm/sec)   p_kst 2.723926e-04   p_cons 8.032822e-01   p_joint 4.889571e-04

Joint ci ratio: 9.785371e-02	ci left: 4.665129e-04	ci right 5.148069e-04	k: 1603	n:3270000
Cons ci ratio: 1.072736e-03	ci left: 8.028562e-01	ci right 8.037182e-01	k: 2626750	n:3270000
KS ci ratio: 1.311599e-01	ci left: 2.551752e-04	ci right 2.912851e-04	k: 892	n:3270000
FANCD2   3270000 perm   5048 sec   (648 perm/sec)   p_kst 2.727829e-04   p_cons 8.032875e-01   p_joint 4.902141e-04

Joint ci ratio: 9.770154e-02	ci left: 4.665777e-04	ci right 5.147990e-04	k: 1608	n:3280000
Cons ci ratio: 1.071043e-03	ci left: 8.028734e-01	ci right 8.037340e-01	k: 2634837	n:3280000
KS ci ratio: 1.308671e-01	ci left: 2.555768e-04	ci right 2.916565e-04	k: 896	n:3280000
FANCD2   3280000 perm   5076 sec   (646 perm/sec)   p_kst 2.731707e-04   p_cons 8.033040e-01   p_joint 4.902439e-04

Joint ci ratio: 9.755009e-02	ci left: 4.666422e-04	ci right 5.147911e-04	k: 1613	n:3290000
Cons ci ratio: 1.069413e-03	ci left: 8.028743e-01	ci right 8.037337e-01	k: 2642871	n:3290000
KS ci ratio: 1.305762e-01	ci left: 2.559760e-04	ci right 2.920255e-04	k: 900	n:3290000
FANCD2   3290000 perm   5103 sec   (645 perm/sec)   p_kst 2.735562e-04   p_cons 8.033043e-01   p_joint 4.902736e-04

Joint ci ratio: 9.739934e-02	ci left: 4.667064e-04	ci right 5.147832e-04	k: 1618	n:3300000
Cons ci ratio: 1.067836e-03	ci left: 8.028619e-01	ci right 8.037200e-01	k: 2650861	n:3300000
KS ci ratio: 1.304316e-01	ci left: 2.557866e-04	ci right 2.917665e-04	k: 902	n:3300000
FANCD2   3300000 perm   5131 sec   (643 perm/sec)   p_kst 2.733333e-04   p_cons 8.032912e-01   p_joint 4.903030e-04

Joint ci ratio: 9.727926e-02	ci left: 4.664754e-04	ci right 5.144659e-04	k: 1622	n:3310000
Cons ci ratio: 1.066192e-03	ci left: 8.028714e-01	ci right 8.037281e-01	k: 2658923	n:3310000
KS ci ratio: 1.302874e-01	ci left: 2.555984e-04	ci right 2.915089e-04	k: 904	n:3310000
FANCD2   3310000 perm   5159 sec   (642 perm/sec)   p_kst 2.731118e-04   p_cons 8.033000e-01   p_joint 4.900302e-04

Joint ci ratio: 9.709992e-02	ci left: 4.668337e-04	ci right 5.147674e-04	k: 1628	n:3320000
Cons ci ratio: 1.064582e-03	ci left: 8.028729e-01	ci right 8.037284e-01	k: 2666959	n:3320000
KS ci ratio: 1.301437e-01	ci left: 2.554113e-04	ci right 2.912529e-04	k: 906	n:3320000
FANCD2   3320000 perm   5186 sec   (640 perm/sec)   p_kst 2.728916e-04   p_cons 8.033009e-01   p_joint 4.903614e-04

Joint ci ratio: 9.695125e-02	ci left: 4.668968e-04	ci right 5.147595e-04	k: 1633	n:3330000
Cons ci ratio: 1.062980e-03	ci left: 8.028741e-01	ci right 8.037283e-01	k: 2674994	n:3330000
KS ci ratio: 1.299290e-01	ci left: 2.555159e-04	ci right 2.913085e-04	k: 909	n:3330000
FANCD2   3330000 perm   5214 sec   (639 perm/sec)   p_kst 2.729730e-04   p_cons 8.033015e-01   p_joint 4.903904e-04

Joint ci ratio: 9.677372e-02	ci left: 4.672518e-04	ci right 5.150582e-04	k: 1639	n:3340000
Cons ci ratio: 1.061368e-03	ci left: 8.028808e-01	ci right 8.037337e-01	k: 2683047	n:3340000
KS ci ratio: 1.297864e-01	ci left: 2.553302e-04	ci right 2.910545e-04	k: 911	n:3340000
FANCD2   3340000 perm   5241 sec   (637 perm/sec)   p_kst 2.727545e-04   p_cons 8.033075e-01   p_joint 4.907186e-04

Joint ci ratio: 9.662653e-02	ci left: 4.673135e-04	ci right 5.150493e-04	k: 1644	n:3350000
Cons ci ratio: 1.059737e-03	ci left: 8.028948e-01	ci right 8.037464e-01	k: 2691125	n:3350000
KS ci ratio: 1.296444e-01	ci left: 2.551457e-04	ci right 2.908021e-04	k: 913	n:3350000
FANCD2   3350000 perm   5269 sec   (636 perm/sec)   p_kst 2.725373e-04   p_cons 8.033209e-01   p_joint 4.907463e-04

Joint ci ratio: 9.645078e-02	ci left: 4.676653e-04	ci right 5.153453e-04	k: 1650	n:3360000
Cons ci ratio: 1.058139e-03	ci left: 8.029017e-01	ci right 8.037520e-01	k: 2699179	n:3360000
KS ci ratio: 1.295028e-01	ci left: 2.549623e-04	ci right 2.905511e-04	k: 915	n:3360000
FANCD2   3360000 perm   5297 sec   (634 perm/sec)   p_kst 2.723214e-04   p_cons 8.033271e-01   p_joint 4.910714e-04

Joint ci ratio: 9.639245e-02	ci left: 4.668567e-04	ci right 5.144238e-04	k: 1652	n:3370000
Cons ci ratio: 1.056510e-03	ci left: 8.029194e-01	ci right 8.037685e-01	k: 2707270	n:3370000
KS ci ratio: 1.293616e-01	ci left: 2.547799e-04	ci right 2.903016e-04	k: 917	n:3370000
FANCD2   3370000 perm   5325 sec   (633 perm/sec)   p_kst 2.721068e-04   p_cons 8.033442e-01   p_joint 4.902077e-04

Joint ci ratio: 9.613105e-02	ci left: 4.680741e-04	ci right 5.156287e-04	k: 1661	n:3380000
Cons ci ratio: 1.054927e-03	ci left: 8.029259e-01	ci right 8.037736e-01	k: 2715323	n:3380000
KS ci ratio: 1.292913e-01	ci left: 2.543124e-04	ci right 2.897482e-04	k: 918	n:3380000
FANCD2   3380000 perm   5354 sec   (631 perm/sec)   p_kst 2.715976e-04   p_cons 8.033500e-01   p_joint 4.914201e-04

Joint ci ratio: 9.592922e-02	ci left: 4.687087e-04	ci right 5.162221e-04	k: 1668	n:3390000
Cons ci ratio: 1.053332e-03	ci left: 8.029379e-01	ci right 8.037843e-01	k: 2723395	n:3390000
KS ci ratio: 1.291508e-01	ci left: 2.541332e-04	ci right 2.895025e-04	k: 920	n:3390000
FANCD2   3390000 perm   5382 sec   (630 perm/sec)   p_kst 2.713864e-04   p_cons 8.033614e-01   p_joint 4.920354e-04

Joint ci ratio: 9.584314e-02	ci left: 4.681913e-04	ci right 5.156073e-04	k: 1671	n:3400000
Cons ci ratio: 1.051772e-03	ci left: 8.029415e-01	ci right 8.037868e-01	k: 2731439	n:3400000
KS ci ratio: 1.290808e-01	ci left: 2.536703e-04	ci right 2.889546e-04	k: 921	n:3400000
FANCD2   3400000 perm   5411 sec   (628 perm/sec)   p_kst 2.708824e-04   p_cons 8.033644e-01   p_joint 4.914706e-04

Joint ci ratio: 9.570016e-02	ci left: 4.682495e-04	ci right 5.155967e-04	k: 1676	n:3410000
Cons ci ratio: 1.050201e-03	ci left: 8.029505e-01	ci right 8.037945e-01	k: 2739501	n:3410000
KS ci ratio: 1.288713e-01	ci left: 2.537778e-04	ci right 2.890154e-04	k: 924	n:3410000
FANCD2   3410000 perm   5439 sec   (627 perm/sec)   p_kst 2.709677e-04   p_cons 8.033727e-01   p_joint 4.914956e-04

Joint ci ratio: 9.555781e-02	ci left: 4.683074e-04	ci right 5.155860e-04	k: 1681	n:3420000
Cons ci ratio: 1.048673e-03	ci left: 8.029485e-01	ci right 8.037913e-01	k: 2747526	n:3420000
KS ci ratio: 1.285935e-01	ci left: 2.541677e-04	ci right 2.893776e-04	k: 928	n:3420000
FANCD2   3420000 perm   5468 sec   (625 perm/sec)   p_kst 2.713450e-04   p_cons 8.033702e-01   p_joint 4.915205e-04

Joint ci ratio: 9.547273e-02	ci left: 4.677958e-04	ci right 5.149784e-04	k: 1684	n:3430000
Cons ci ratio: 1.047180e-03	ci left: 8.029379e-01	ci right 8.037794e-01	k: 2755521	n:3430000
KS ci ratio: 1.283864e-01	ci left: 2.542732e-04	ci right 2.894366e-04	k: 931	n:3430000
FANCD2   3430000 perm   5497 sec   (624 perm/sec)   p_kst 2.714286e-04   p_cons 8.033589e-01   p_joint 4.909621e-04

Joint ci ratio: 9.530319e-02	ci left: 4.681385e-04	ci right 5.152671e-04	k: 1690	n:3440000
Cons ci ratio: 1.045665e-03	ci left: 8.029360e-01	ci right 8.037763e-01	k: 2763546	n:3440000
KS ci ratio: 1.280434e-01	ci left: 2.549409e-04	ci right 2.900953e-04	k: 936	n:3440000
FANCD2   3440000 perm   5526 sec   (623 perm/sec)   p_kst 2.720930e-04   p_cons 8.033564e-01   p_joint 4.912791e-04

Joint ci ratio: 9.524692e-02	ci left: 4.673474e-04	ci right 5.143671e-04	k: 1692	n:3450000
Cons ci ratio: 1.044140e-03	ci left: 8.029393e-01	ci right 8.037784e-01	k: 2771589	n:3450000
KS ci ratio: 1.280434e-01	ci left: 2.542019e-04	ci right 2.892545e-04	k: 936	n:3450000
FANCD2   3450000 perm   5553 sec   (621 perm/sec)   p_kst 2.713043e-04   p_cons 8.033591e-01   p_joint 4.904348e-04

Joint ci ratio: 9.510658e-02	ci left: 4.674074e-04	ci right 5.143600e-04	k: 1697	n:3460000
Cons ci ratio: 1.042580e-03	ci left: 8.029551e-01	ci right 8.037930e-01	k: 2779675	n:3460000
KS ci ratio: 1.279070e-01	ci left: 2.540268e-04	ci right 2.890150e-04	k: 938	n:3460000
FANCD2   3460000 perm   5582 sec   (620 perm/sec)   p_kst 2.710983e-04   p_cons 8.033743e-01   p_joint 4.904624e-04

Joint ci ratio: 9.488328e-02	ci left: 4.683111e-04	ci right 5.152379e-04	k: 1705	n:3470000
Cons ci ratio: 1.041041e-03	ci left: 8.029664e-01	ci right 8.038031e-01	k: 2787746	n:3470000
KS ci ratio: 1.275002e-01	ci left: 2.549686e-04	ci right 2.899664e-04	k: 944	n:3470000
FANCD2   3470000 perm   5611 sec   (618 perm/sec)   p_kst 2.720461e-04   p_cons 8.033850e-01   p_joint 4.913545e-04

Joint ci ratio: 9.468919e-02	ci left: 4.689292e-04	ci right 5.158165e-04	k: 1712	n:3480000
Cons ci ratio: 1.039580e-03	ci left: 8.029562e-01	ci right 8.037916e-01	k: 2795742	n:3480000
KS ci ratio: 1.272312e-01	ci left: 2.553487e-04	ci right 2.903192e-04	k: 948	n:3480000
FANCD2   3480000 perm   5640 sec   (617 perm/sec)   p_kst 2.724138e-04   p_cons 8.033741e-01   p_joint 4.919540e-04

Joint ci ratio: 9.449629e-02	ci left: 4.695439e-04	ci right 5.163916e-04	k: 1719	n:3490000
Cons ci ratio: 1.038095e-03	ci left: 8.029551e-01	ci right 8.037894e-01	k: 2803770	n:3490000
KS ci ratio: 1.269639e-01	ci left: 2.557268e-04	ci right 2.906699e-04	k: 952	n:3490000
FANCD2   3490000 perm   5668 sec   (616 perm/sec)   p_kst 2.727794e-04   p_cons 8.033725e-01   p_joint 4.925501e-04

Joint ci ratio: 9.449635e-02	ci left: 4.682023e-04	ci right 5.149163e-04	k: 1719	n:3500000
Cons ci ratio: 1.036620e-03	ci left: 8.029529e-01	ci right 8.037860e-01	k: 2811794	n:3500000
KS ci ratio: 1.269639e-01	ci left: 2.549961e-04	ci right 2.898394e-04	k: 952	n:3500000
FANCD2   3500000 perm   5697 sec   (614 perm/sec)   p_kst 2.720000e-04   p_cons 8.033697e-01   p_joint 4.911429e-04

Joint ci ratio: 9.435930e-02	ci left: 4.682593e-04	ci right 5.149074e-04	k: 1724	n:3510000
Cons ci ratio: 1.035163e-03	ci left: 8.029471e-01	ci right 8.037789e-01	k: 2819805	n:3510000
KS ci ratio: 1.266321e-01	ci left: 2.556490e-04	ci right 2.904833e-04	k: 957	n:3510000
FANCD2   3510000 perm   5725 sec   (613 perm/sec)   p_kst 2.726496e-04   p_cons 8.033632e-01   p_joint 4.911681e-04

Joint ci ratio: 9.425010e-02	ci left: 4.680385e-04	ci right 5.146077e-04	k: 1728	n:3520000
Cons ci ratio: 1.033637e-03	ci left: 8.029645e-01	ci right 8.037952e-01	k: 2827898	n:3520000
KS ci ratio: 1.266322e-01	ci left: 2.549227e-04	ci right 2.896581e-04	k: 957	n:3520000
FANCD2   3520000 perm   5755 sec   (612 perm/sec)   p_kst 2.718750e-04   p_cons 8.033801e-01   p_joint 4.909091e-04

Joint ci ratio: 9.411412e-02	ci left: 4.680957e-04	ci right 5.145997e-04	k: 1733	n:3530000
Cons ci ratio: 1.032219e-03	ci left: 8.029507e-01	ci right 8.037802e-01	k: 2835881	n:3530000
KS ci ratio: 1.266322e-01	ci left: 2.542005e-04	ci right 2.888375e-04	k: 957	n:3530000
FANCD2   3530000 perm   5784 sec   (610 perm/sec)   p_kst 2.711048e-04   p_cons 8.033657e-01   p_joint 4.909348e-04

Joint ci ratio: 9.400576e-02	ci left: 4.678768e-04	ci right 5.143026e-04	k: 1737	n:3540000
Cons ci ratio: 1.030768e-03	ci left: 8.029489e-01	ci right 8.037772e-01	k: 2843906	n:3540000
KS ci ratio: 1.262375e-01	ci left: 2.551237e-04	ci right 2.897701e-04	k: 963	n:3540000
FANCD2   3540000 perm   5814 sec   (609 perm/sec)   p_kst 2.720339e-04   p_cons 8.033633e-01   p_joint 4.906780e-04

Joint ci ratio: 9.395176e-02	ci left: 4.671090e-04	ci right 5.134304e-04	k: 1739	n:3550000
Cons ci ratio: 1.029360e-03	ci left: 8.029354e-01	ci right 8.037626e-01	k: 2851890	n:3550000
KS ci ratio: 1.260415e-01	ci left: 2.552235e-04	ci right 2.898255e-04	k: 966	n:3550000
FANCD2   3550000 perm   5843 sec   (608 perm/sec)   p_kst 2.721127e-04   p_cons 8.033493e-01   p_joint 4.898592e-04

Joint ci ratio: 9.379018e-02	ci left: 4.674427e-04	ci right 5.137132e-04	k: 1745	n:3560000
Cons ci ratio: 1.027936e-03	ci left: 8.029291e-01	ci right 8.037552e-01	k: 2859899	n:3560000
KS ci ratio: 1.257816e-01	ci left: 2.555948e-04	ci right 2.901704e-04	k: 970	n:3560000
FANCD2   3560000 perm   5872 sec   (606 perm/sec)   p_kst 2.724719e-04   p_cons 8.033424e-01   p_joint 4.901685e-04

Joint ci ratio: 9.373655e-02	ci left: 4.666804e-04	ci right 5.128476e-04	k: 1747	n:3570000
Cons ci ratio: 1.026515e-03	ci left: 8.029237e-01	ci right 8.037486e-01	k: 2867911	n:3570000
KS ci ratio: 1.257169e-01	ci left: 2.551501e-04	ci right 2.896465e-04	k: 971	n:3570000
FANCD2   3570000 perm   5901 sec   (605 perm/sec)   p_kst 2.719888e-04   p_cons 8.033364e-01   p_joint 4.893557e-04

Joint ci ratio: 9.354939e-02	ci left: 4.672863e-04	ci right 5.134161e-04	k: 1754	n:3580000
Cons ci ratio: 1.025074e-03	ci left: 8.029262e-01	ci right 8.037499e-01	k: 2875951	n:3580000
KS ci ratio: 1.252666e-01	ci left: 2.563314e-04	ci right 2.908541e-04	k: 978	n:3580000
FANCD2   3580000 perm   5930 sec   (604 perm/sec)   p_kst 2.731844e-04   p_cons 8.033383e-01   p_joint 4.899441e-04

Joint ci ratio: 9.338987e-02	ci left: 4.676170e-04	ci right 5.136963e-04	k: 1760	n:3590000
Cons ci ratio: 1.023659e-03	ci left: 8.029224e-01	ci right 8.037450e-01	k: 2883969	n:3590000
KS ci ratio: 1.251388e-01	ci left: 2.561570e-04	ci right 2.906185e-04	k: 980	n:3590000
FANCD2   3590000 perm   5959 sec   (602 perm/sec)   p_kst 2.729805e-04   p_cons 8.033340e-01   p_joint 4.902507e-04

Joint ci ratio: 9.320478e-02	ci left: 4.682171e-04	ci right 5.142592e-04	k: 1767	n:3600000
Cons ci ratio: 1.022232e-03	ci left: 8.029246e-01	ci right 8.037460e-01	k: 2892008	n:3600000
KS ci ratio: 1.248211e-01	ci left: 2.567909e-04	ci right 2.912435e-04	k: 985	n:3600000
FANCD2   3600000 perm   5988 sec   (601 perm/sec)   p_kst 2.736111e-04   p_cons 8.033356e-01   p_joint 4.908333e-04

Joint ci ratio: 9.312583e-02	ci left: 4.677318e-04	ci right 5.136850e-04	k: 1770	n:3610000
Cons ci ratio: 1.020823e-03	ci left: 8.029226e-01	ci right 8.037429e-01	k: 2900032	n:3610000
KS ci ratio: 1.246947e-01	ci left: 2.566163e-04	ci right 2.910080e-04	k: 987	n:3610000
FANCD2   3610000 perm   6018 sec   (600 perm/sec)   p_kst 2.734072e-04   p_cons 8.033330e-01   p_joint 4.903047e-04

Joint ci ratio: 9.299465e-02	ci left: 4.677888e-04	ci right 5.136794e-04	k: 1775	n:3620000
Cons ci ratio: 1.019424e-03	ci left: 8.029194e-01	ci right 8.037386e-01	k: 2908052	n:3620000
KS ci ratio: 1.245058e-01	ci left: 2.567103e-04	ci right 2.910587e-04	k: 990	n:3620000
FANCD2   3620000 perm   6048 sec   (599 perm/sec)   p_kst 2.734807e-04   p_cons 8.033293e-01   p_joint 4.903315e-04

Joint ci ratio: 9.286402e-02	ci left: 4.678455e-04	ci right 5.136737e-04	k: 1780	n:3630000
Cons ci ratio: 1.017989e-03	ci left: 8.029293e-01	ci right 8.037474e-01	k: 2916119	n:3630000
KS ci ratio: 1.241929e-01	ci left: 2.573377e-04	ci right 2.916771e-04	k: 995	n:3630000
FANCD2   3630000 perm   6077 sec   (597 perm/sec)   p_kst 2.741047e-04   p_cons 8.033386e-01   p_joint 4.903581e-04

Joint ci ratio: 9.270798e-02	ci left: 4.681703e-04	ci right 5.139491e-04	k: 1786	n:3640000
Cons ci ratio: 1.016655e-03	ci left: 8.029094e-01	ci right 8.037264e-01	k: 2924078	n:3640000
KS ci ratio: 1.240684e-01	ci left: 2.571631e-04	ci right 2.914423e-04	k: 997	n:3640000
FANCD2   3640000 perm   6107 sec   (596 perm/sec)   p_kst 2.739011e-04   p_cons 8.033181e-01   p_joint 4.906593e-04

Joint ci ratio: 9.265618e-02	ci left: 4.674229e-04	ci right 5.131017e-04	k: 1788	n:3650000
Cons ci ratio: 1.015290e-03	ci left: 8.029011e-01	ci right 8.037170e-01	k: 2932079	n:3650000
KS ci ratio: 1.238823e-01	ci left: 2.572550e-04	ci right 2.914912e-04	k: 1000	n:3650000
FANCD2   3650000 perm   6137 sec   (595 perm/sec)   p_kst 2.739726e-04   p_cons 8.033093e-01   p_joint 4.898630e-04

Joint ci ratio: 9.255278e-02	ci left: 4.672134e-04	ci right 5.128179e-04	k: 1792	n:3660000
Cons ci ratio: 1.013894e-03	ci left: 8.029041e-01	ci right 8.037189e-01	k: 2940121	n:3660000
KS ci ratio: 1.238205e-01	ci left: 2.568169e-04	ci right 2.909764e-04	k: 1001	n:3660000
FANCD2   3660000 perm   6167 sec   (593 perm/sec)   p_kst 2.734973e-04   p_cons 8.033117e-01   p_joint 4.896175e-04

Joint ci ratio: 9.234695e-02	ci left: 4.680697e-04	ci right 5.136508e-04	k: 1800	n:3670000
Cons ci ratio: 1.012424e-03	ci left: 8.029322e-01	ci right 8.037458e-01	k: 2948255	n:3670000
KS ci ratio: 1.236972e-01	ci left: 2.566452e-04	ci right 2.907454e-04	k: 1003	n:3670000
FANCD2   3670000 perm   6197 sec   (592 perm/sec)   p_kst 2.732970e-04   p_cons 8.033392e-01   p_joint 4.904632e-04

Joint ci ratio: 9.227016e-02	ci left: 4.675942e-04	ci right 5.130891e-04	k: 1803	n:3680000
Cons ci ratio: 1.011066e-03	ci left: 8.029269e-01	ci right 8.037394e-01	k: 2956267	n:3680000
KS ci ratio: 1.236356e-01	ci left: 2.562111e-04	ci right 2.902355e-04	k: 1004	n:3680000
FANCD2   3680000 perm   6226 sec   (591 perm/sec)   p_kst 2.728261e-04   p_cons 8.033334e-01   p_joint 4.899457e-04

Joint ci ratio: 9.221909e-02	ci left: 4.668565e-04	ci right 5.122531e-04	k: 1805	n:3690000
Cons ci ratio: 1.009687e-03	ci left: 8.029301e-01	ci right 8.037415e-01	k: 2964310	n:3690000
KS ci ratio: 1.235128e-01	ci left: 2.560420e-04	ci right 2.900077e-04	k: 1006	n:3690000
FANCD2   3690000 perm   6256 sec   (590 perm/sec)   p_kst 2.726287e-04   p_cons 8.033360e-01   p_joint 4.891599e-04

Joint ci ratio: 9.214261e-02	ci left: 4.663868e-04	ci right 5.116981e-04	k: 1808	n:3700000
Cons ci ratio: 1.008420e-03	ci left: 8.028997e-01	ci right 8.037101e-01	k: 2972229	n:3700000
KS ci ratio: 1.233292e-01	ci left: 2.561358e-04	ci right 2.900597e-04	k: 1009	n:3700000
FANCD2   3700000 perm   6286 sec   (589 perm/sec)   p_kst 2.727027e-04   p_cons 8.033051e-01   p_joint 4.886486e-04

Joint ci ratio: 9.199017e-02	ci left: 4.667098e-04	ci right 5.119734e-04	k: 1814	n:3710000
Cons ci ratio: 1.007104e-03	ci left: 8.028865e-01	ci right 8.036958e-01	k: 2980211	n:3710000
KS ci ratio: 1.231465e-01	ci left: 2.562291e-04	ci right 2.901114e-04	k: 1012	n:3710000
FANCD2   3710000 perm   6316 sec   (587 perm/sec)   p_kst 2.727763e-04   p_cons 8.032914e-01   p_joint 4.889488e-04

Joint ci ratio: 9.188898e-02	ci left: 4.665057e-04	ci right 5.116971e-04	k: 1818	n:3720000
Cons ci ratio: 1.005775e-03	ci left: 8.028790e-01	ci right 8.036872e-01	k: 2988214	n:3720000
KS ci ratio: 1.229645e-01	ci left: 2.563219e-04	ci right 2.901628e-04	k: 1015	n:3720000
FANCD2   3720000 perm   6345 sec   (586 perm/sec)   p_kst 2.728495e-04   p_cons 8.032833e-01   p_joint 4.887097e-04

Joint ci ratio: 9.181333e-02	ci left: 4.660408e-04	ci right 5.111480e-04	k: 1821	n:3730000
Cons ci ratio: 1.004433e-03	ci left: 8.028775e-01	ci right 8.036845e-01	k: 2996239	n:3730000
KS ci ratio: 1.227834e-01	ci left: 2.564143e-04	ci right 2.902139e-04	k: 1018	n:3730000
FANCD2   3730000 perm   6376 sec   (585 perm/sec)   p_kst 2.729223e-04   p_cons 8.032812e-01   p_joint 4.882038e-04

Joint ci ratio: 9.173786e-02	ci left: 4.655785e-04	ci right 5.106018e-04	k: 1824	n:3740000
Cons ci ratio: 1.003146e-03	ci left: 8.028598e-01	ci right 8.036659e-01	k: 3004204	n:3740000
KS ci ratio: 1.227834e-01	ci left: 2.557287e-04	ci right 2.894379e-04	k: 1018	n:3740000
FANCD2   3740000 perm   6407 sec   (584 perm/sec)   p_kst 2.721925e-04   p_cons 8.032631e-01   p_joint 4.877005e-04

Joint ci ratio: 9.156240e-02	ci left: 4.661608e-04	ci right 5.111497e-04	k: 1831	n:3750000
Cons ci ratio: 1.001825e-03	ci left: 8.028549e-01	ci right 8.036599e-01	k: 3012216	n:3750000
KS ci ratio: 1.226031e-01	ci left: 2.558222e-04	ci right 2.894906e-04	k: 1021	n:3750000
FANCD2   3750000 perm   6437 sec   (583 perm/sec)   p_kst 2.722667e-04   p_cons 8.032576e-01   p_joint 4.882667e-04

Joint ci ratio: 9.141281e-02	ci left: 4.664803e-04	ci right 5.114225e-04	k: 1837	n:3760000
Cons ci ratio: 1.000478e-03	ci left: 8.028598e-01	ci right 8.036637e-01	k: 3020265	n:3760000
KS ci ratio: 1.224833e-01	ci left: 2.556574e-04	ci right 2.892689e-04	k: 1023	n:3760000
FANCD2   3760000 perm   6467 sec   (581 perm/sec)   p_kst 2.720745e-04   p_cons 8.032620e-01   p_joint 4.885638e-04

Joint ci ratio: 9.116509e-02	ci left: 4.678349e-04	ci right 5.127790e-04	k: 1847	n:3770000
Cons ci ratio: 9.991755e-04	ci left: 8.028525e-01	ci right 8.036553e-01	k: 3028268	n:3770000
KS ci ratio: 1.221260e-01	ci left: 2.565221e-04	ci right 2.901418e-04	k: 1029	n:3770000
FANCD2   3770000 perm   6498 sec   (580 perm/sec)   p_kst 2.729443e-04   p_cons 8.032541e-01   p_joint 4.899204e-04

Joint ci ratio: 9.104201e-02	ci left: 4.678898e-04	ci right 5.127753e-04	k: 1852	n:3780000
Cons ci ratio: 9.978301e-04	ci left: 8.028603e-01	ci right 8.036620e-01	k: 3036328	n:3780000
KS ci ratio: 1.220076e-01	ci left: 2.563565e-04	ci right 2.899195e-04	k: 1031	n:3780000
FANCD2   3780000 perm   6528 sec   (579 perm/sec)   p_kst 2.727513e-04   p_cons 8.032614e-01   p_joint 4.899471e-04

Joint ci ratio: 9.094391e-02	ci left: 4.676867e-04	ci right 5.125017e-04	k: 1856	n:3790000
Cons ci ratio: 9.964909e-04	ci left: 8.028678e-01	ci right 8.036685e-01	k: 3044387	n:3790000
KS ci ratio: 1.219486e-01	ci left: 2.559359e-04	ci right 2.894264e-04	k: 1032	n:3790000
FANCD2   3790000 perm   6559 sec   (578 perm/sec)   p_kst 2.722955e-04   p_cons 8.032683e-01   p_joint 4.897098e-04

Joint ci ratio: 9.082172e-02	ci left: 4.677418e-04	ci right 5.124987e-04	k: 1861	n:3800000
Cons ci ratio: 9.951322e-04	ci left: 8.028831e-01	ci right 8.036827e-01	k: 3052476	n:3800000
KS ci ratio: 1.218896e-01	ci left: 2.555175e-04	ci right 2.889360e-04	k: 1033	n:3800000
FANCD2   3800000 perm   6590 sec   (577 perm/sec)   p_kst 2.718421e-04   p_cons 8.032832e-01   p_joint 4.897368e-04

Joint ci ratio: 9.074867e-02	ci left: 4.672837e-04	ci right 5.119589e-04	k: 1864	n:3810000
Cons ci ratio: 9.937980e-04	ci left: 8.028924e-01	ci right 8.036909e-01	k: 3060542	n:3810000
KS ci ratio: 1.217719e-01	ci left: 2.553558e-04	ci right 2.887185e-04	k: 1035	n:3810000
FANCD2   3810000 perm   6621 sec   (575 perm/sec)   p_kst 2.716535e-04   p_cons 8.032919e-01   p_joint 4.892388e-04

Joint ci ratio: 9.070009e-02	ci left: 4.665721e-04	ci right 5.111541e-04	k: 1866	n:3820000
Cons ci ratio: 9.925020e-04	ci left: 8.028911e-01	ci right 8.036886e-01	k: 3068568	n:3820000
KS ci ratio: 1.215960e-01	ci left: 2.554487e-04	ci right 2.887720e-04	k: 1038	n:3820000
FANCD2   3820000 perm   6652 sec   (574 perm/sec)   p_kst 2.717277e-04   p_cons 8.032901e-01   p_joint 4.884817e-04

Joint ci ratio: 9.045809e-02	ci left: 4.679057e-04	ci right 5.124896e-04	k: 1876	n:3830000
Cons ci ratio: 9.912160e-04	ci left: 8.028882e-01	ci right 8.036847e-01	k: 3076588	n:3830000
KS ci ratio: 1.210726e-01	ci left: 2.570603e-04	ci right 2.904391e-04	k: 1047	n:3830000
FANCD2   3830000 perm   6684 sec   (573 perm/sec)   p_kst 2.733681e-04   p_cons 8.032867e-01   p_joint 4.898172e-04

Joint ci ratio: 9.024195e-02	ci left: 4.689780e-04	ci right 5.135516e-04	k: 1885	n:3840000
Cons ci ratio: 9.898861e-04	ci left: 8.029010e-01	ci right 8.036964e-01	k: 3084668	n:3840000
KS ci ratio: 1.207275e-01	ci left: 2.579061e-04	ci right 2.912925e-04	k: 1053	n:3840000
FANCD2   3840000 perm   6716 sec   (572 perm/sec)   p_kst 2.742187e-04   p_cons 8.032990e-01   p_joint 4.908854e-04

Joint ci ratio: 9.017029e-02	ci left: 4.685215e-04	ci right 5.130145e-04	k: 1888	n:3850000
Cons ci ratio: 9.886281e-04	ci left: 8.028924e-01	ci right 8.036868e-01	k: 3092666	n:3850000
KS ci ratio: 1.206131e-01	ci left: 2.577401e-04	ci right 2.910710e-04	k: 1055	n:3850000
FANCD2   3850000 perm   6748 sec   (571 perm/sec)   p_kst 2.740260e-04   p_cons 8.032899e-01   p_joint 4.903896e-04

Joint ci ratio: 8.997992e-02	ci left: 4.693336e-04	ci right 5.138047e-04	k: 1896	n:3860000
Cons ci ratio: 9.873515e-04	ci left: 8.028914e-01	ci right 8.036848e-01	k: 3100693	n:3860000
KS ci ratio: 1.205561e-01	ci left: 2.573236e-04	ci right 2.905839e-04	k: 1056	n:3860000
FANCD2   3860000 perm   6780 sec   (569 perm/sec)   p_kst 2.735751e-04   p_cons 8.032883e-01   p_joint 4.911917e-04

Joint ci ratio: 8.979075e-02	ci left: 4.701416e-04	ci right 5.145907e-04	k: 1904	n:3870000
Cons ci ratio: 9.861265e-04	ci left: 8.028754e-01	ci right 8.036678e-01	k: 3108662	n:3870000
KS ci ratio: 1.202719e-01	ci left: 2.579117e-04	ci right 2.911639e-04	k: 1061	n:3870000
FANCD2   3870000 perm   6812 sec   (568 perm/sec)   p_kst 2.741602e-04   p_cons 8.032718e-01   p_joint 4.919897e-04

Joint ci ratio: 8.969664e-02	ci left: 4.699377e-04	ci right 5.143185e-04	k: 1908	n:3880000
Cons ci ratio: 9.848997e-04	ci left: 8.028616e-01	ci right 8.036529e-01	k: 3116639	n:3880000
KS ci ratio: 1.201588e-01	ci left: 2.577470e-04	ci right 2.909444e-04	k: 1063	n:3880000
FANCD2   3880000 perm   6844 sec   (567 perm/sec)   p_kst 2.739691e-04   p_cons 8.032575e-01   p_joint 4.917526e-04

Joint ci ratio: 8.955600e-02	ci left: 4.702375e-04	ci right 5.145733e-04	k: 1914	n:3890000
Cons ci ratio: 9.836118e-04	ci left: 8.028689e-01	ci right 8.036592e-01	k: 3124698	n:3890000
KS ci ratio: 1.199898e-01	ci left: 2.578324e-04	ci right 2.909908e-04	k: 1066	n:3890000
FANCD2   3890000 perm   6876 sec   (566 perm/sec)   p_kst 2.740360e-04   p_cons 8.032643e-01   p_joint 4.920308e-04

Joint ci ratio: 8.941602e-02	ci left: 4.705358e-04	ci right 5.148267e-04	k: 1920	n:3900000
Cons ci ratio: 9.823393e-04	ci left: 8.028728e-01	ci right 8.036621e-01	k: 3132744	n:3900000
KS ci ratio: 1.197096e-01	ci left: 2.584150e-04	ci right 2.915652e-04	k: 1071	n:3900000
FANCD2   3900000 perm   6908 sec   (565 perm/sec)   p_kst 2.746154e-04   p_cons 8.032677e-01   p_joint 4.923077e-04

Joint ci ratio: 8.932308e-02	ci left: 4.703325e-04	ci right 5.145559e-04	k: 1924	n:3910000
Cons ci ratio: 9.810653e-04	ci left: 8.028788e-01	ci right 8.036671e-01	k: 3140798	n:3910000
KS ci ratio: 1.197096e-01	ci left: 2.577540e-04	ci right 2.908195e-04	k: 1071	n:3910000
FANCD2   3910000 perm   6940 sec   (563 perm/sec)   p_kst 2.739130e-04   p_cons 8.032731e-01   p_joint 4.920716e-04

Joint ci ratio: 8.920730e-02	ci left: 4.703797e-04	ci right 5.145473e-04	k: 1929	n:3920000
Cons ci ratio: 9.799008e-04	ci left: 8.028510e-01	ci right 8.036383e-01	k: 3148720	n:3920000
KS ci ratio: 1.197097e-01	ci left: 2.570965e-04	ci right 2.900776e-04	k: 1071	n:3920000
FANCD2   3920000 perm   6972 sec   (562 perm/sec)   p_kst 2.732143e-04   p_cons 8.032449e-01   p_joint 4.920918e-04

Joint ci ratio: 8.911502e-02	ci left: 4.701779e-04	ci right 5.142785e-04	k: 1933	n:3930000
Cons ci ratio: 9.787001e-04	ci left: 8.028364e-01	ci right 8.036227e-01	k: 3156693	n:3930000
KS ci ratio: 1.195425e-01	ci left: 2.571828e-04	ci right 2.901257e-04	k: 1074	n:3930000
FANCD2   3930000 perm   7005 sec   (561 perm/sec)   p_kst 2.732824e-04   p_cons 8.032298e-01   p_joint 4.918575e-04

Joint ci ratio: 8.900004e-02	ci left: 4.702254e-04	ci right 5.142705e-04	k: 1938	n:3940000
Cons ci ratio: 9.774442e-04	ci left: 8.028411e-01	ci right 8.036265e-01	k: 3164742	n:3940000
KS ci ratio: 1.193761e-01	ci left: 2.572688e-04	ci right 2.901735e-04	k: 1077	n:3940000
FANCD2   3940000 perm   7037 sec   (560 perm/sec)   p_kst 2.733503e-04   p_cons 8.032340e-01   p_joint 4.918782e-04

Joint ci ratio: 8.897715e-02	ci left: 4.692824e-04	ci right 5.132273e-04	k: 1939	n:3950000
Cons ci ratio: 9.762103e-04	ci left: 8.028403e-01	ci right 8.036246e-01	k: 3172769	n:3950000
KS ci ratio: 1.193207e-01	ci left: 2.568630e-04	ci right 2.896996e-04	k: 1078	n:3950000
FANCD2   3950000 perm   7072 sec   (559 perm/sec)   p_kst 2.729114e-04   p_cons 8.032327e-01   p_joint 4.908861e-04

Joint ci ratio: 8.888557e-02	ci left: 4.690850e-04	ci right 5.129639e-04	k: 1943	n:3960000
Cons ci ratio: 9.749632e-04	ci left: 8.028452e-01	ci right 8.036286e-01	k: 3180819	n:3960000
KS ci ratio: 1.192103e-01	ci left: 2.567044e-04	ci right 2.894881e-04	k: 1080	n:3960000
FANCD2   3960000 perm   7104 sec   (557 perm/sec)   p_kst 2.727273e-04   p_cons 8.032371e-01   p_joint 4.906566e-04

Joint ci ratio: 8.883991e-02	ci left: 4.683960e-04	ci right 5.121868e-04	k: 1945	n:3970000
Cons ci ratio: 9.737371e-04	ci left: 8.028449e-01	ci right 8.036272e-01	k: 3188848	n:3970000
KS ci ratio: 1.190453e-01	ci left: 2.567909e-04	ci right 2.895371e-04	k: 1083	n:3970000
FANCD2   3970000 perm   7137 sec   (556 perm/sec)   p_kst 2.727960e-04   p_cons 8.032363e-01   p_joint 4.899244e-04

Joint ci ratio: 8.872600e-02	ci left: 4.684475e-04	ci right 5.121840e-04	k: 1950	n:3980000
Cons ci ratio: 9.725296e-04	ci left: 8.028400e-01	ci right 8.036214e-01	k: 3196859	n:3980000
KS ci ratio: 1.189356e-01	ci left: 2.566333e-04	ci right 2.893271e-04	k: 1085	n:3980000
FANCD2   3980000 perm   7169 sec   (555 perm/sec)   p_kst 2.726131e-04   p_cons 8.032309e-01   p_joint 4.899497e-04

Joint ci ratio: 8.865788e-02	ci left: 4.680087e-04	ci right 5.116689e-04	k: 1953	n:3990000
Cons ci ratio: 9.712988e-04	ci left: 8.028442e-01	ci right 8.036246e-01	k: 3204906	n:3990000
KS ci ratio: 1.188262e-01	ci left: 2.564764e-04	ci right 2.891181e-04	k: 1087	n:3990000
FANCD2   3990000 perm   7202 sec   (554 perm/sec)   p_kst 2.724311e-04   p_cons 8.032346e-01   p_joint 4.894737e-04

Joint ci ratio: 8.856729e-02	ci left: 4.678165e-04	ci right 5.114119e-04	k: 1957	n:4000000
Cons ci ratio: 9.700934e-04	ci left: 8.028416e-01	ci right 8.036210e-01	k: 3212926	n:4000000
KS ci ratio: 1.186627e-01	ci left: 2.565630e-04	ci right 2.891676e-04	k: 1090	n:4000000
FANCD2   4000000 perm   7236 sec   (553 perm/sec)   p_kst 2.725000e-04   p_cons 8.032315e-01   p_joint 4.892500e-04

Joint ci ratio: 8.847697e-02	ci left: 4.676253e-04	ci right 5.111561e-04	k: 1961	n:4010000
Cons ci ratio: 9.688955e-04	ci left: 8.028380e-01	ci right 8.036165e-01	k: 3220942	n:4010000
KS ci ratio: 1.186084e-01	ci left: 2.561651e-04	ci right 2.887033e-04	k: 1091	n:4010000
FANCD2   4010000 perm   7271 sec   (552 perm/sec)   p_kst 2.720698e-04   p_cons 8.032274e-01   p_joint 4.890274e-04

Joint ci ratio: 8.843194e-02	ci left: 4.669485e-04	ci right 5.103931e-04	k: 1963	n:4020000
Cons ci ratio: 9.676594e-04	ci left: 8.028483e-01	ci right 8.036258e-01	k: 3229014	n:4020000
KS ci ratio: 1.185542e-01	ci left: 2.557693e-04	ci right 2.882412e-04	k: 1092	n:4020000
FANCD2   4020000 perm   7306 sec   (550 perm/sec)   p_kst 2.716418e-04   p_cons 8.032373e-01   p_joint 4.883085e-04

Joint ci ratio: 8.840948e-02	ci left: 4.660325e-04	ci right 5.093803e-04	k: 1964	n:4030000
Cons ci ratio: 9.664652e-04	ci left: 8.028465e-01	ci right 8.036230e-01	k: 3237037	n:4030000
KS ci ratio: 1.185000e-01	ci left: 2.553754e-04	ci right 2.877815e-04	k: 1093	n:4030000
FANCD2   4030000 perm   7341 sec   (549 perm/sec)   p_kst 2.712159e-04   p_cons 8.032350e-01   p_joint 4.873449e-04

Joint ci ratio: 8.823002e-02	ci left: 4.668154e-04	ci right 5.101433e-04	k: 1972	n:4040000
Cons ci ratio: 9.651953e-04	ci left: 8.028709e-01	ci right 8.036465e-01	k: 3245166	n:4040000
KS ci ratio: 1.182839e-01	ci left: 2.557041e-04	ci right 2.880886e-04	k: 1097	n:4040000
FANCD2   4040000 perm   7375 sec   (548 perm/sec)   p_kst 2.715347e-04   p_cons 8.032589e-01   p_joint 4.881188e-04

Joint ci ratio: 8.809616e-02	ci left: 4.671116e-04	ci right 5.103979e-04	k: 1978	n:4050000
Cons ci ratio: 9.640297e-04	ci left: 8.028626e-01	ci right 8.036372e-01	k: 3253163	n:4050000
KS ci ratio: 1.180691e-01	ci left: 2.560311e-04	ci right 2.883941e-04	k: 1101	n:4050000
FANCD2   4050000 perm   7409 sec   (547 perm/sec)   p_kst 2.718519e-04   p_cons 8.032501e-01   p_joint 4.883951e-04

Joint ci ratio: 8.798508e-02	ci left: 4.671655e-04	ci right 5.103994e-04	k: 1983	n:4060000
Cons ci ratio: 9.628564e-04	ci left: 8.028583e-01	ci right 8.036319e-01	k: 3261176	n:4060000
KS ci ratio: 1.179087e-01	ci left: 2.561176e-04	ci right 2.884444e-04	k: 1104	n:4060000
FANCD2   4060000 perm   7442 sec   (546 perm/sec)   p_kst 2.719212e-04   p_cons 8.032453e-01   p_joint 4.884236e-04

Joint ci ratio: 8.794080e-02	ci left: 4.664983e-04	ci right 5.096475e-04	k: 1985	n:4070000
Cons ci ratio: 9.616448e-04	ci left: 8.028680e-01	ci right 8.036407e-01	k: 3269246	n:4070000
KS ci ratio: 1.176428e-01	ci left: 2.566807e-04	ci right 2.890004e-04	k: 1109	n:4070000
FANCD2   4070000 perm   7478 sec   (544 perm/sec)   p_kst 2.724816e-04   p_cons 8.032545e-01   p_joint 4.877150e-04

Joint ci ratio: 8.785238e-02	ci left: 4.663137e-04	ci right 5.094003e-04	k: 1989	n:4080000
Cons ci ratio: 9.605010e-04	ci left: 8.028568e-01	ci right 8.036286e-01	k: 3277231	n:4080000
KS ci ratio: 1.175899e-01	ci left: 2.562894e-04	ci right 2.885444e-04	k: 1110	n:4080000
FANCD2   4080000 perm   7512 sec   (543 perm/sec)   p_kst 2.720588e-04   p_cons 8.032429e-01   p_joint 4.875000e-04

Joint ci ratio: 8.778626e-02	ci left: 4.658910e-04	ci right 5.089045e-04	k: 1992	n:4090000
Cons ci ratio: 9.593167e-04	ci left: 8.028604e-01	ci right 8.036311e-01	k: 3285276	n:4090000
KS ci ratio: 1.173787e-01	ci left: 2.566121e-04	ci right 2.888456e-04	k: 1114	n:4090000
FANCD2   4090000 perm   7545 sec   (542 perm/sec)   p_kst 2.723716e-04   p_cons 8.032460e-01   p_joint 4.870416e-04

Joint ci ratio: 8.767634e-02	ci left: 4.659474e-04	ci right 5.089095e-04	k: 1997	n:4100000
Cons ci ratio: 9.580444e-04	ci left: 8.028944e-01	ci right 8.036642e-01	k: 3293446	n:4100000
KS ci ratio: 1.172211e-01	ci left: 2.566964e-04	ci right 2.888943e-04	k: 1117	n:4100000
FANCD2   4100000 perm   7577 sec   (541 perm/sec)   p_kst 2.724390e-04   p_cons 8.032795e-01   p_joint 4.870732e-04

Joint ci ratio: 8.747949e-02	ci left: 4.669556e-04	ci right 5.099090e-04	k: 2006	n:4110000
Cons ci ratio: 9.568603e-04	ci left: 8.029008e-01	ci right 8.036696e-01	k: 3301503	n:4110000
KS ci ratio: 1.169598e-01	ci left: 2.572528e-04	ci right 2.894435e-04	k: 1122	n:4110000
FANCD2   4110000 perm   7610 sec   (540 perm/sec)   p_kst 2.729927e-04   p_cons 8.032854e-01   p_joint 4.880779e-04

Joint ci ratio: 8.734901e-02	ci left: 4.672467e-04	ci right 5.101595e-04	k: 2012	n:4120000
Cons ci ratio: 9.556829e-04	ci left: 8.029064e-01	ci right 8.036743e-01	k: 3309557	n:4120000
KS ci ratio: 1.168558e-01	ci left: 2.570996e-04	ci right 2.892406e-04	k: 1124	n:4120000
FANCD2   4120000 perm   7644 sec   (539 perm/sec)   p_kst 2.728155e-04   p_cons 8.032905e-01   p_joint 4.883495e-04

Joint ci ratio: 8.717593e-02	ci left: 4.680101e-04	ci right 5.109035e-04	k: 2020	n:4130000
Cons ci ratio: 9.544907e-04	ci left: 8.029182e-01	ci right 8.036852e-01	k: 3317637	n:4130000
KS ci ratio: 1.167003e-01	ci left: 2.571823e-04	ci right 2.892879e-04	k: 1127	n:4130000
FANCD2   4130000 perm   7676 sec   (538 perm/sec)   p_kst 2.728814e-04   p_cons 8.033019e-01   p_joint 4.891041e-04

Joint ci ratio: 8.711132e-02	ci left: 4.675885e-04	ci right 5.104099e-04	k: 2023	n:4140000
Cons ci ratio: 9.533599e-04	ci left: 8.029112e-01	ci right 8.036773e-01	k: 3325639	n:4140000
KS ci ratio: 1.165970e-01	ci left: 2.570301e-04	ci right 2.890863e-04	k: 1129	n:4140000
FANCD2   4140000 perm   7710 sec   (537 perm/sec)   p_kst 2.727053e-04   p_cons 8.032944e-01   p_joint 4.886473e-04

Joint ci ratio: 8.704685e-02	ci left: 4.671689e-04	ci right 5.099186e-04	k: 2026	n:4150000
Cons ci ratio: 9.522142e-04	ci left: 8.029105e-01	ci right 8.036756e-01	k: 3333667	n:4150000
KS ci ratio: 1.164940e-01	ci left: 2.568786e-04	ci right 2.888857e-04	k: 1131	n:4150000
FANCD2   4150000 perm   7743 sec   (536 perm/sec)   p_kst 2.725301e-04   p_cons 8.032933e-01   p_joint 4.881928e-04

Joint ci ratio: 8.696110e-02	ci left: 4.669865e-04	ci right 5.096753e-04	k: 2030	n:4160000
Cons ci ratio: 9.511434e-04	ci left: 8.028862e-01	ci right 8.036504e-01	k: 3341597	n:4160000
KS ci ratio: 1.163399e-01	ci left: 2.569613e-04	ci right 2.889334e-04	k: 1134	n:4160000
FANCD2   4160000 perm   7776 sec   (535 perm/sec)   p_kst 2.725962e-04   p_cons 8.032685e-01   p_joint 4.879808e-04

Joint ci ratio: 8.679030e-02	ci left: 4.677434e-04	ci right 5.104132e-04	k: 2038	n:4170000
Cons ci ratio: 9.499833e-04	ci left: 8.028929e-01	ci right 8.036563e-01	k: 3349656	n:4170000
KS ci ratio: 1.161355e-01	ci left: 2.572764e-04	ci right 2.892276e-04	k: 1138	n:4170000
FANCD2   4170000 perm   7810 sec   (534 perm/sec)   p_kst 2.729017e-04   p_cons 8.032748e-01   p_joint 4.887290e-04

Joint ci ratio: 8.679035e-02	ci left: 4.666244e-04	ci right 5.091921e-04	k: 2038	n:4180000
Cons ci ratio: 9.488282e-04	ci left: 8.028995e-01	ci right 8.036619e-01	k: 3357714	n:4180000
KS ci ratio: 1.161355e-01	ci left: 2.566609e-04	ci right 2.885357e-04	k: 1138	n:4180000
FANCD2   4180000 perm   7843 sec   (533 perm/sec)   p_kst 2.722488e-04   p_cons 8.032809e-01   p_joint 4.875598e-04

Joint ci ratio: 8.672659e-02	ci left: 4.662112e-04	ci right 5.087084e-04	k: 2041	n:4190000
Cons ci ratio: 9.477330e-04	ci left: 8.028873e-01	ci right 8.036488e-01	k: 3365694	n:4190000
KS ci ratio: 1.160337e-01	ci left: 2.565118e-04	ci right 2.883382e-04	k: 1140	n:4190000
FANCD2   4190000 perm   7877 sec   (532 perm/sec)   p_kst 2.720764e-04   p_cons 8.032683e-01   p_joint 4.871122e-04

Joint ci ratio: 8.664179e-02	ci left: 4.660329e-04	ci right 5.084702e-04	k: 2045	n:4200000
Cons ci ratio: 9.466238e-04	ci left: 8.028812e-01	ci right 8.036418e-01	k: 3373699	n:4200000
KS ci ratio: 1.159321e-01	ci left: 2.563634e-04	ci right 2.881417e-04	k: 1142	n:4200000
FANCD2   4200000 perm   7911 sec   (531 perm/sec)   p_kst 2.719048e-04   p_cons 8.032617e-01   p_joint 4.869048e-04

Joint ci ratio: 8.645181e-02	ci left: 4.670175e-04	ci right 5.094464e-04	k: 2054	n:4210000
Cons ci ratio: 9.455505e-04	ci left: 8.028643e-01	ci right 8.036241e-01	k: 3381659	n:4210000
KS ci ratio: 1.157803e-01	ci left: 2.564464e-04	ci right 2.881905e-04	k: 1145	n:4210000
FANCD2   4210000 perm   7944 sec   (530 perm/sec)   p_kst 2.719715e-04   p_cons 8.032444e-01   p_joint 4.878860e-04

Joint ci ratio: 8.643082e-02	ci left: 4.661426e-04	ci right 5.084813e-04	k: 2055	n:4220000
Cons ci ratio: 9.444532e-04	ci left: 8.028569e-01	ci right 8.036157e-01	k: 3389658	n:4220000
KS ci ratio: 1.157803e-01	ci left: 2.558387e-04	ci right 2.875076e-04	k: 1145	n:4220000
FANCD2   4220000 perm   7978 sec   (529 perm/sec)   p_kst 2.713270e-04   p_cons 8.032365e-01   p_joint 4.869668e-04

Joint ci ratio: 8.632592e-02	ci left: 4.661971e-04	ci right 5.084868e-04	k: 2060	n:4230000
Cons ci ratio: 9.433082e-04	ci left: 8.028667e-01	ci right 8.036246e-01	k: 3397730	n:4230000
KS ci ratio: 1.156794e-01	ci left: 2.556930e-04	ci right 2.873144e-04	k: 1147	n:4230000
FANCD2   4230000 perm   8011 sec   (528 perm/sec)   p_kst 2.711584e-04   p_cons 8.032459e-01   p_joint 4.869976e-04

Joint ci ratio: 8.624228e-02	ci left: 4.660206e-04	ci right 5.082513e-04	k: 2064	n:4240000
Cons ci ratio: 9.421674e-04	ci left: 8.028765e-01	ci right 8.036335e-01	k: 3405802	n:4240000
KS ci ratio: 1.154784e-01	ci left: 2.560061e-04	ci right 2.876074e-04	k: 1151	n:4240000
FANCD2   4240000 perm   8045 sec   (527 perm/sec)   p_kst 2.714623e-04   p_cons 8.032552e-01   p_joint 4.867925e-04

Joint ci ratio: 8.613805e-02	ci left: 4.660752e-04	ci right 5.082572e-04	k: 2069	n:4250000
Cons ci ratio: 9.410594e-04	ci left: 8.028766e-01	ci right 8.036327e-01	k: 3413833	n:4250000
KS ci ratio: 1.152784e-01	ci left: 2.563178e-04	ci right 2.878990e-04	k: 1155	n:4250000
FANCD2   4250000 perm   8078 sec   (526 perm/sec)   p_kst 2.717647e-04   p_cons 8.032548e-01   p_joint 4.868235e-04

Joint ci ratio: 8.603421e-02	ci left: 4.661296e-04	ci right 5.082631e-04	k: 2074	n:4260000
Cons ci ratio: 9.399301e-04	ci left: 8.028851e-01	ci right 8.036403e-01	k: 3421900	n:4260000
KS ci ratio: 1.150299e-01	ci left: 2.568560e-04	ci right 2.884307e-04	k: 1160	n:4260000
FANCD2   4260000 perm   8113 sec   (525 perm/sec)   p_kst 2.723005e-04   p_cons 8.032629e-01   p_joint 4.868545e-04

Joint ci ratio: 8.597210e-02	ci left: 4.657254e-04	ci right 5.077905e-04	k: 2077	n:4270000
Cons ci ratio: 9.388738e-04	ci left: 8.028704e-01	ci right 8.036248e-01	k: 3429868	n:4270000
KS ci ratio: 1.148322e-01	ci left: 2.571643e-04	ci right 2.887189e-04	k: 1164	n:4270000
FANCD2   4270000 perm   8148 sec   (524 perm/sec)   p_kst 2.725995e-04   p_cons 8.032478e-01   p_joint 4.864169e-04

Joint ci ratio: 8.593079e-02	ci left: 4.650945e-04	ci right 5.070814e-04	k: 2079	n:4280000
Cons ci ratio: 9.377996e-04	ci left: 8.028630e-01	ci right 8.036165e-01	k: 3437867	n:4280000
KS ci ratio: 1.147830e-01	ci left: 2.567904e-04	ci right 2.882847e-04	k: 1165	n:4280000
FANCD2   4280000 perm   8182 sec   (523 perm/sec)   p_kst 2.721963e-04   p_cons 8.032400e-01   p_joint 4.857477e-04

Joint ci ratio: 8.588953e-02	ci left: 4.644666e-04	ci right 5.063756e-04	k: 2081	n:4290000
Cons ci ratio: 9.366848e-04	ci left: 8.028706e-01	ci right 8.036232e-01	k: 3445930	n:4290000
KS ci ratio: 1.146847e-01	ci left: 2.566446e-04	ci right 2.880923e-04	k: 1167	n:4290000
FANCD2   4290000 perm   8218 sec   (522 perm/sec)   p_kst 2.720280e-04   p_cons 8.032471e-01   p_joint 4.850816e-04

Joint ci ratio: 8.574549e-02	ci left: 4.649794e-04	ci right 5.068608e-04	k: 2088	n:4300000
Cons ci ratio: 9.355623e-04	ci left: 8.028821e-01	ci right 8.036338e-01	k: 3454010	n:4300000
KS ci ratio: 1.145377e-01	ci left: 2.567254e-04	ci right 2.881400e-04	k: 1170	n:4300000
FANCD2   4300000 perm   8252 sec   (521 perm/sec)   p_kst 2.720930e-04   p_cons 8.032581e-01   p_joint 4.855814e-04

Joint ci ratio: 8.572501e-02	ci left: 4.641276e-04	ci right 5.059218e-04	k: 2089	n:4310000
Cons ci ratio: 9.344458e-04	ci left: 8.028928e-01	ci right 8.036437e-01	k: 3462087	n:4310000
KS ci ratio: 1.144888e-01	ci left: 2.563552e-04	ci right 2.877101e-04	k: 1171	n:4310000
FANCD2   4310000 perm   8287 sec   (520 perm/sec)   p_kst 2.716937e-04   p_cons 8.032684e-01   p_joint 4.846868e-04

Joint ci ratio: 8.562265e-02	ci left: 4.641858e-04	ci right 5.059329e-04	k: 2094	n:4320000
Cons ci ratio: 9.333409e-04	ci left: 8.029010e-01	ci right 8.036509e-01	k: 3470153	n:4320000
KS ci ratio: 1.143913e-01	ci left: 2.562115e-04	ci right 2.875203e-04	k: 1173	n:4320000
FANCD2   4320000 perm   8322 sec   (519 perm/sec)   p_kst 2.715278e-04   p_cons 8.032762e-01   p_joint 4.847222e-04

Joint ci ratio: 8.550029e-02	ci left: 4.644698e-04	ci right 5.061798e-04	k: 2100	n:4330000
Cons ci ratio: 9.322678e-04	ci left: 8.028996e-01	ci right 8.036487e-01	k: 3478178	n:4330000
KS ci ratio: 1.141484e-01	ci left: 2.567415e-04	ci right 2.880440e-04	k: 1178	n:4330000
FANCD2   4330000 perm   8356 sec   (518 perm/sec)   p_kst 2.720554e-04   p_cons 8.032744e-01   p_joint 4.849885e-04

Joint ci ratio: 8.545965e-02	ci left: 4.638506e-04	ci right 5.054841e-04	k: 2102	n:4340000
Cons ci ratio: 9.312276e-04	ci left: 8.028884e-01	ci right 8.036366e-01	k: 3486160	n:4340000
KS ci ratio: 1.139553e-01	ci left: 2.570453e-04	ci right 2.883282e-04	k: 1182	n:4340000
FANCD2   4340000 perm   8391 sec   (517 perm/sec)   p_kst 2.723502e-04   p_cons 8.032627e-01   p_joint 4.843318e-04

Joint ci ratio: 8.533799e-02	ci left: 4.641341e-04	ci right 5.057309e-04	k: 2108	n:4350000
Cons ci ratio: 9.301780e-04	ci left: 8.028815e-01	ci right 8.036289e-01	k: 3494161	n:4350000
KS ci ratio: 1.138111e-01	ci left: 2.571244e-04	ci right 2.883747e-04	k: 1185	n:4350000
FANCD2   4350000 perm   8427 sec   (516 perm/sec)   p_kst 2.724138e-04   p_cons 8.032554e-01   p_joint 4.845977e-04

Joint ci ratio: 8.523701e-02	ci left: 4.641920e-04	ci right 5.057422e-04	k: 2113	n:4360000
Cons ci ratio: 9.290679e-04	ci left: 8.028965e-01	ci right 8.036430e-01	k: 3502257	n:4360000
KS ci ratio: 1.137152e-01	ci left: 2.569803e-04	ci right 2.881851e-04	k: 1187	n:4360000
FANCD2   4360000 perm   8463 sec   (515 perm/sec)   p_kst 2.722477e-04   p_cons 8.032700e-01   p_joint 4.846330e-04

Joint ci ratio: 8.515649e-02	ci left: 4.640256e-04	ci right 5.055197e-04	k: 2117	n:4370000
Cons ci ratio: 9.279691e-04	ci left: 8.029089e-01	ci right 8.036545e-01	k: 3510342	n:4370000
KS ci ratio: 1.136196e-01	ci left: 2.568369e-04	ci right 2.879963e-04	k: 1189	n:4370000
FANCD2   4370000 perm   8498 sec   (514 perm/sec)   p_kst 2.720824e-04   p_cons 8.032819e-01   p_joint 4.844394e-04

Joint ci ratio: 8.503612e-02	ci left: 4.643069e-04	ci right 5.057645e-04	k: 2123	n:4380000
Cons ci ratio: 9.269051e-04	ci left: 8.029107e-01	ci right 8.036555e-01	k: 3518381	n:4380000
KS ci ratio: 1.135243e-01	ci left: 2.566942e-04	ci right 2.878083e-04	k: 1191	n:4380000
FANCD2   4380000 perm   8534 sec   (513 perm/sec)   p_kst 2.719178e-04   p_cons 8.032833e-01   p_joint 4.847032e-04

Joint ci ratio: 8.487640e-02	ci left: 4.650328e-04	ci right 5.064735e-04	k: 2131	n:4390000
Cons ci ratio: 9.258827e-04	ci left: 8.028996e-01	ci right 8.036435e-01	k: 3526363	n:4390000
KS ci ratio: 1.133343e-01	ci left: 2.569948e-04	ci right 2.880897e-04	k: 1195	n:4390000
FANCD2   4390000 perm   8571 sec   (512 perm/sec)   p_kst 2.722096e-04   p_cons 8.032718e-01   p_joint 4.854214e-04

Joint ci ratio: 8.465822e-02	ci left: 4.664230e-04	ci right 5.078754e-04	k: 2142	n:4400000
Cons ci ratio: 9.248178e-04	ci left: 8.029042e-01	ci right 8.036473e-01	k: 3534414	n:4400000
KS ci ratio: 1.130040e-01	ci left: 2.579566e-04	ci right 2.890709e-04	k: 1202	n:4400000
FANCD2   4400000 perm   8607 sec   (511 perm/sec)   p_kst 2.731818e-04   p_cons 8.032759e-01   p_joint 4.868182e-04

Joint ci ratio: 8.459905e-02	ci left: 4.660312e-04	ci right 5.074184e-04	k: 2145	n:4410000
Cons ci ratio: 9.238142e-04	ci left: 8.028890e-01	ci right 8.036313e-01	k: 3542378	n:4410000
KS ci ratio: 1.129571e-01	ci left: 2.575920e-04	ci right 2.886486e-04	k: 1203	n:4410000
FANCD2   4410000 perm   8643 sec   (510 perm/sec)   p_kst 2.727891e-04   p_cons 8.032603e-01   p_joint 4.863946e-04

Joint ci ratio: 8.450066e-02	ci left: 4.660841e-04	ci right 5.074255e-04	k: 2150	n:4420000
Cons ci ratio: 9.227961e-04	ci left: 8.028800e-01	ci right 8.036214e-01	k: 3550369	n:4420000
KS ci ratio: 1.128166e-01	ci left: 2.576688e-04	ci right 2.886934e-04	k: 1206	n:4420000
FANCD2   4420000 perm   8680 sec   (509 perm/sec)   p_kst 2.728507e-04   p_cons 8.032509e-01   p_joint 4.864253e-04

Joint ci ratio: 8.440262e-02	ci left: 4.661368e-04	ci right 5.074326e-04	k: 2155	n:4430000
Cons ci ratio: 9.217688e-04	ci left: 8.028753e-01	ci right 8.036159e-01	k: 3558379	n:4430000
KS ci ratio: 1.126301e-01	ci left: 2.579646e-04	ci right 2.889701e-04	k: 1210	n:4430000
FANCD2   4430000 perm   8715 sec   (508 perm/sec)   p_kst 2.731377e-04   p_cons 8.032458e-01   p_joint 4.864560e-04

Joint ci ratio: 8.424643e-02	ci left: 4.668508e-04	ci right 5.081295e-04	k: 2163	n:4440000
Cons ci ratio: 9.207744e-04	ci left: 8.028605e-01	ci right 8.036003e-01	k: 3566344	n:4440000
KS ci ratio: 1.123521e-01	ci left: 2.586969e-04	ci right 2.897086e-04	k: 1216	n:4440000
FANCD2   4440000 perm   8752 sec   (507 perm/sec)   p_kst 2.738739e-04   p_cons 8.032306e-01   p_joint 4.871622e-04

Joint ci ratio: 8.411049e-02	ci left: 4.673416e-04	ci right 5.085938e-04	k: 2170	n:4450000
Cons ci ratio: 9.197551e-04	ci left: 8.028555e-01	ci right 8.035945e-01	k: 3574352	n:4450000
KS ci ratio: 1.120303e-01	ci left: 2.596445e-04	ci right 2.906748e-04	k: 1223	n:4450000
FANCD2   4450000 perm   8788 sec   (506 perm/sec)   p_kst 2.748315e-04   p_cons 8.032252e-01   p_joint 4.876404e-04

Joint ci ratio: 8.393665e-02	ci left: 4.682693e-04	ci right 5.095137e-04	k: 2179	n:4460000
Cons ci ratio: 9.187125e-04	ci left: 8.028597e-01	ci right 8.035978e-01	k: 3582401	n:4460000
KS ci ratio: 1.118933e-01	ci left: 2.597161e-04	ci right 2.907145e-04	k: 1226	n:4460000
FANCD2   4460000 perm   8824 sec   (505 perm/sec)   p_kst 2.748879e-04   p_cons 8.032289e-01   p_joint 4.885650e-04

Joint ci ratio: 8.391744e-02	ci left: 4.674407e-04	ci right 5.086023e-04	k: 2180	n:4470000
Cons ci ratio: 9.176903e-04	ci left: 8.028580e-01	ci right 8.035953e-01	k: 3590424	n:4470000
KS ci ratio: 1.118477e-01	ci left: 2.593526e-04	ci right 2.902941e-04	k: 1227	n:4470000
FANCD2   4470000 perm   8860 sec   (505 perm/sec)   p_kst 2.744966e-04   p_cons 8.032268e-01   p_joint 4.876957e-04

Joint ci ratio: 8.382141e-02	ci left: 4.674900e-04	ci right 5.086065e-04	k: 2185	n:4480000
Cons ci ratio: 9.166936e-04	ci left: 8.028487e-01	ci right 8.035852e-01	k: 3598413	n:4480000
KS ci ratio: 1.117568e-01	ci left: 2.592076e-04	ci right 2.901050e-04	k: 1229	n:4480000
FANCD2   4480000 perm   8896 sec   (504 perm/sec)   p_kst 2.743304e-04   p_cons 8.032172e-01   p_joint 4.877232e-04

Joint ci ratio: 8.366842e-02	ci left: 4.681933e-04	ci right 5.092928e-04	k: 2193	n:4490000
Cons ci ratio: 9.156704e-04	ci left: 8.028498e-01	ci right 8.035855e-01	k: 3606448	n:4490000
KS ci ratio: 1.115755e-01	ci left: 2.594963e-04	ci right 2.903747e-04	k: 1233	n:4490000
FANCD2   4490000 perm   8933 sec   (503 perm/sec)   p_kst 2.746102e-04   p_cons 8.032178e-01   p_joint 4.884187e-04

Joint ci ratio: 8.359226e-02	ci left: 4.680231e-04	ci right 5.090685e-04	k: 2197	n:4500000
Cons ci ratio: 9.146242e-04	ci left: 8.028599e-01	ci right 8.035948e-01	k: 3614524	n:4500000
KS ci ratio: 1.114401e-01	ci left: 2.595677e-04	ci right 2.904146e-04	k: 1236	n:4500000
FANCD2   4500000 perm   8970 sec   (502 perm/sec)   p_kst 2.746667e-04   p_cons 8.032276e-01   p_joint 4.882222e-04

Joint ci ratio: 8.345945e-02	ci left: 4.685051e-04	ci right 5.095243e-04	k: 2204	n:4510000
Cons ci ratio: 9.136015e-04	ci left: 8.028632e-01	ci right 8.035972e-01	k: 3622569	n:4510000
KS ci ratio: 1.113951e-01	ci left: 2.592077e-04	ci right 2.899986e-04	k: 1237	n:4510000
FANCD2   4510000 perm   9007 sec   (501 perm/sec)   p_kst 2.742794e-04   p_cons 8.032304e-01   p_joint 4.886918e-04

Joint ci ratio: 8.338386e-02	ci left: 4.683351e-04	ci right 5.093004e-04	k: 2208	n:4520000
Cons ci ratio: 9.125911e-04	ci left: 8.028633e-01	ci right 8.035965e-01	k: 3630600	n:4520000
KS ci ratio: 1.113502e-01	ci left: 2.588493e-04	ci right 2.895844e-04	k: 1238	n:4520000
FANCD2   4520000 perm   9043 sec   (500 perm/sec)   p_kst 2.738938e-04   p_cons 8.032301e-01   p_joint 4.884956e-04

Joint ci ratio: 8.334617e-02	ci left: 4.677335e-04	ci right 5.086268e-04	k: 2210	n:4530000
Cons ci ratio: 9.115364e-04	ci left: 8.028800e-01	ci right 8.036124e-01	k: 3638706	n:4530000
KS ci ratio: 1.112604e-01	ci left: 2.587071e-04	ci right 2.893989e-04	k: 1240	n:4530000
FANCD2   4530000 perm   9080 sec   (499 perm/sec)   p_kst 2.737307e-04   p_cons 8.032464e-01   p_joint 4.878587e-04

Joint ci ratio: 8.323330e-02	ci left: 4.679973e-04	ci right 5.088556e-04	k: 2216	n:4540000
Cons ci ratio: 9.105196e-04	ci left: 8.028847e-01	ci right 8.036163e-01	k: 3646758	n:4540000
KS ci ratio: 1.111262e-01	ci left: 2.587797e-04	ci right 2.894407e-04	k: 1243	n:4540000
FANCD2   4540000 perm   9118 sec   (498 perm/sec)   p_kst 2.737885e-04   p_cons 8.032507e-01   p_joint 4.881057e-04

Joint ci ratio: 8.313960e-02	ci left: 4.680448e-04	ci right 5.088590e-04	k: 2221	n:4550000
Cons ci ratio: 9.095599e-04	ci left: 8.028707e-01	ci right 8.036015e-01	k: 3654725	n:4550000
KS ci ratio: 1.108591e-01	ci left: 2.594930e-04	ci right 2.901598e-04	k: 1249	n:4550000
FANCD2   4550000 perm   9155 sec   (497 perm/sec)   p_kst 2.745055e-04   p_cons 8.032363e-01   p_joint 4.881319e-04

Joint ci ratio: 8.304621e-02	ci left: 4.680921e-04	ci right 5.088623e-04	k: 2226	n:4560000
Cons ci ratio: 9.085263e-04	ci left: 8.028835e-01	ci right 8.036135e-01	k: 3662814	n:4560000
KS ci ratio: 1.106821e-01	ci left: 2.597768e-04	ci right 2.904250e-04	k: 1253	n:4560000
FANCD2   4560000 perm   9193 sec   (496 perm/sec)   p_kst 2.747807e-04   p_cons 8.032487e-01   p_joint 4.881579e-04

Joint ci ratio: 8.289742e-02	ci left: 4.687820e-04	ci right 5.095357e-04	k: 2234	n:4570000
Cons ci ratio: 9.075320e-04	ci left: 8.028838e-01	ci right 8.036130e-01	k: 3670846	n:4570000
KS ci ratio: 1.104621e-01	ci left: 2.602722e-04	ci right 2.909138e-04	k: 1258	n:4570000
FANCD2   4570000 perm   9230 sec   (495 perm/sec)   p_kst 2.752735e-04   p_cons 8.032486e-01   p_joint 4.888403e-04

Joint ci ratio: 8.280485e-02	ci left: 4.688276e-04	ci right 5.095375e-04	k: 2239	n:4580000
Cons ci ratio: 9.065780e-04	ci left: 8.028712e-01	ci right 8.035996e-01	k: 3678819	n:4580000
KS ci ratio: 1.103745e-01	ci left: 2.601286e-04	ci right 2.907274e-04	k: 1260	n:4580000
FANCD2   4580000 perm   9268 sec   (494 perm/sec)   p_kst 2.751092e-04   p_cons 8.032356e-01   p_joint 4.888646e-04

Joint ci ratio: 8.267575e-02	ci left: 4.692997e-04	ci right 5.099840e-04	k: 2246	n:4590000
Cons ci ratio: 9.055839e-04	ci left: 8.028737e-01	ci right 8.036013e-01	k: 3686861	n:4590000
KS ci ratio: 1.102434e-01	ci left: 2.601974e-04	ci right 2.907656e-04	k: 1263	n:4590000
FANCD2   4590000 perm   9305 sec   (493 perm/sec)   p_kst 2.751634e-04   p_cons 8.032377e-01   p_joint 4.893246e-04

Joint ci ratio: 8.260227e-02	ci left: 4.691311e-04	ci right 5.097629e-04	k: 2250	n:4600000
Cons ci ratio: 9.045856e-04	ci left: 8.028788e-01	ci right 8.036056e-01	k: 3694915	n:4600000
KS ci ratio: 1.101128e-01	ci left: 2.602660e-04	ci right 2.908036e-04	k: 1266	n:4600000
FANCD2   4600000 perm   9343 sec   (492 perm/sec)   p_kst 2.752174e-04   p_cons 8.032424e-01   p_joint 4.891304e-04

Joint ci ratio: 8.243760e-02	ci left: 4.700254e-04	ci right 5.106496e-04	k: 2259	n:4610000
Cons ci ratio: 9.036222e-04	ci left: 8.028728e-01	ci right 8.035988e-01	k: 3702918	n:4610000
KS ci ratio: 1.099394e-01	ci left: 2.605452e-04	ci right 2.910644e-04	k: 1270	n:4610000
FANCD2   4610000 perm   9381 sec   (491 perm/sec)   p_kst 2.754881e-04   p_cons 8.032360e-01   p_joint 4.900217e-04

Joint ci ratio: 8.232837e-02	ci left: 4.702800e-04	ci right 5.108698e-04	k: 2265	n:4620000
Cons ci ratio: 9.026414e-04	ci left: 8.028740e-01	ci right 8.035992e-01	k: 3710954	n:4620000
KS ci ratio: 1.096808e-01	ci left: 2.612443e-04	ci right 2.917687e-04	k: 1276	n:4620000
FANCD2   4620000 perm   9419 sec   (491 perm/sec)   p_kst 2.761905e-04   p_cons 8.032368e-01   p_joint 4.902597e-04

Joint ci ratio: 8.227395e-02	ci left: 4.698989e-04	ci right 5.104277e-04	k: 2268	n:4630000
Cons ci ratio: 9.016115e-04	ci left: 8.028935e-01	ci right 8.036180e-01	k: 3719075	n:4630000
KS ci ratio: 1.096379e-01	ci left: 2.608901e-04	ci right 2.913604e-04	k: 1277	n:4630000
FANCD2   4630000 perm   9455 sec   (490 perm/sec)   p_kst 2.758099e-04   p_cons 8.032559e-01   p_joint 4.898488e-04

Joint ci ratio: 8.218345e-02	ci left: 4.699416e-04	ci right 5.104274e-04	k: 2273	n:4640000
Cons ci ratio: 9.006619e-04	ci left: 8.028860e-01	ci right 8.036097e-01	k: 3727071	n:4640000
KS ci ratio: 1.095950e-01	ci left: 2.605375e-04	ci right 2.909539e-04	k: 1278	n:4640000
FANCD2   4640000 perm   9493 sec   (489 perm/sec)   p_kst 2.754310e-04   p_cons 8.032481e-01   p_joint 4.898707e-04

Joint ci ratio: 8.216542e-02	ci left: 4.691416e-04	ci right 5.095491e-04	k: 2274	n:4650000
Cons ci ratio: 8.996993e-04	ci left: 8.028842e-01	ci right 8.036071e-01	k: 3735093	n:4650000
KS ci ratio: 1.095951e-01	ci left: 2.599772e-04	ci right 2.903282e-04	k: 1278	n:4650000
FANCD2   4650000 perm   9531 sec   (488 perm/sec)   p_kst 2.748387e-04   p_cons 8.032458e-01   p_joint 4.890323e-04

Joint ci ratio: 8.209329e-02	ci left: 4.689756e-04	ci right 5.093317e-04	k: 2278	n:4660000
Cons ci ratio: 8.987179e-04	ci left: 8.028901e-01	ci right 8.036121e-01	k: 3743151	n:4660000
KS ci ratio: 1.094668e-01	ci left: 2.600454e-04	ci right 2.903666e-04	k: 1281	n:4660000
FANCD2   4660000 perm   9570 sec   (487 perm/sec)   p_kst 2.748927e-04   p_cons 8.032513e-01   p_joint 4.888412e-04

Joint ci ratio: 8.203932e-02	ci left: 4.686006e-04	ci right 5.088966e-04	k: 2281	n:4670000
Cons ci ratio: 8.977439e-04	ci left: 8.028944e-01	ci right 8.036157e-01	k: 3751202	n:4670000
KS ci ratio: 1.093815e-01	ci left: 2.599051e-04	ci right 2.901848e-04	k: 1283	n:4670000
FANCD2   4670000 perm   9609 sec   (486 perm/sec)   p_kst 2.747323e-04   p_cons 8.032552e-01   p_joint 4.884368e-04

Joint ci ratio: 8.189587e-02	ci left: 4.692737e-04	ci right 5.095537e-04	k: 2289	n:4680000
Cons ci ratio: 8.967628e-04	ci left: 8.029024e-01	ci right 8.036229e-01	k: 3759270	n:4680000
KS ci ratio: 1.092539e-01	ci left: 2.599733e-04	ci right 2.902233e-04	k: 1286	n:4680000
FANCD2   4680000 perm   9647 sec   (485 perm/sec)   p_kst 2.747863e-04   p_cons 8.032628e-01   p_joint 4.891026e-04

Joint ci ratio: 8.182445e-02	ci left: 4.691085e-04	ci right 5.093375e-04	k: 2293	n:4690000
Cons ci ratio: 8.958199e-04	ci left: 8.028979e-01	ci right 8.036177e-01	k: 3767280	n:4690000
KS ci ratio: 1.090423e-01	ci left: 2.604559e-04	ci right 2.906997e-04	k: 1291	n:4690000
FANCD2   4690000 perm   9686 sec   (484 perm/sec)   p_kst 2.752665e-04   p_cons 8.032580e-01   p_joint 4.889126e-04

Joint ci ratio: 8.173542e-02	ci left: 4.691525e-04	ci right 5.093394e-04	k: 2298	n:4700000
Cons ci ratio: 8.948390e-04	ci left: 8.029080e-01	ci right 8.036270e-01	k: 3775358	n:4700000
KS ci ratio: 1.088739e-01	ci left: 2.607296e-04	ci right 2.909554e-04	k: 1295	n:4700000
FANCD2   4700000 perm   9724 sec   (483 perm/sec)   p_kst 2.755319e-04   p_cons 8.032677e-01   p_joint 4.889362e-04

Joint ci ratio: 8.171768e-02	ci left: 4.683644e-04	ci right 5.084747e-04	k: 2299	n:4710000
Cons ci ratio: 8.938596e-04	ci left: 8.029186e-01	ci right 8.036368e-01	k: 3783439	n:4710000
KS ci ratio: 1.088739e-01	ci left: 2.601761e-04	ci right 2.903377e-04	k: 1295	n:4710000
FANCD2   4710000 perm   9763 sec   (482 perm/sec)   p_kst 2.749469e-04   p_cons 8.032779e-01   p_joint 4.881104e-04

Joint ci ratio: 8.171772e-02	ci left: 4.673721e-04	ci right 5.073974e-04	k: 2299	n:4720000
Cons ci ratio: 8.928666e-04	ci left: 8.029352e-01	ci right 8.036526e-01	k: 3791548	n:4720000
KS ci ratio: 1.088319e-01	ci left: 2.598310e-04	ci right 2.899402e-04	k: 1296	n:4720000
FANCD2   4720000 perm   9801 sec   (482 perm/sec)   p_kst 2.745763e-04   p_cons 8.032941e-01   p_joint 4.870763e-04

Joint ci ratio: 8.170000e-02	ci left: 4.665910e-04	ci right 5.065404e-04	k: 2300	n:4730000
Cons ci ratio: 8.919132e-04	ci left: 8.029387e-01	ci right 8.036554e-01	k: 3799596	n:4730000
KS ci ratio: 1.088320e-01	ci left: 2.592816e-04	ci right 2.893272e-04	k: 1296	n:4730000
FANCD2   4730000 perm   9840 sec   (481 perm/sec)   p_kst 2.739958e-04   p_cons 8.032973e-01   p_joint 4.862579e-04

Joint ci ratio: 8.162909e-02	ci left: 4.664333e-04	ci right 5.063329e-04	k: 2304	n:4740000
Cons ci ratio: 8.909707e-04	ci left: 8.029395e-01	ci right 8.036555e-01	k: 3807631	n:4740000
KS ci ratio: 1.087482e-01	ci left: 2.591451e-04	ci right 2.891502e-04	k: 1298	n:4740000
FANCD2   4740000 perm   9880 sec   (480 perm/sec)   p_kst 2.738397e-04   p_cons 8.032977e-01   p_joint 4.860759e-04

Joint ci ratio: 8.152304e-02	ci left: 4.666887e-04	ci right 5.065558e-04	k: 2310	n:4750000
Cons ci ratio: 8.900169e-04	ci left: 8.029454e-01	ci right 8.036605e-01	k: 3815690	n:4750000
KS ci ratio: 1.086646e-01	ci left: 2.590091e-04	ci right 2.889740e-04	k: 1300	n:4750000
FANCD2   4750000 perm   9919 sec   (479 perm/sec)   p_kst 2.736842e-04   p_cons 8.033032e-01   p_joint 4.863158e-04

Joint ci ratio: 8.147019e-02	ci left: 4.663257e-04	ci right 5.061347e-04	k: 2313	n:4760000
Cons ci ratio: 8.891052e-04	ci left: 8.029374e-01	ci right 8.036518e-01	k: 3823683	n:4760000
KS ci ratio: 1.086228e-01	ci left: 2.586693e-04	ci right 2.885827e-04	k: 1301	n:4760000
FANCD2   4760000 perm   9959 sec   (478 perm/sec)   p_kst 2.733193e-04   p_cons 8.032947e-01   p_joint 4.859244e-04

Joint ci ratio: 8.143503e-02	ci left: 4.657588e-04	ci right 5.055015e-04	k: 2315	n:4770000
Cons ci ratio: 8.881680e-04	ci left: 8.029394e-01	ci right 8.036531e-01	k: 3831724	n:4770000
KS ci ratio: 1.086229e-01	ci left: 2.581271e-04	ci right 2.879777e-04	k: 1301	n:4770000
FANCD2   4770000 perm   9997 sec   (477 perm/sec)   p_kst 2.727463e-04   p_cons 8.032964e-01   p_joint 4.853249e-04

Joint ci ratio: 8.136481e-02	ci left: 4.656042e-04	ci right 5.052978e-04	k: 2319	n:4780000
Cons ci ratio: 8.872490e-04	ci left: 8.029360e-01	ci right 8.036490e-01	k: 3839739	n:4780000
KS ci ratio: 1.085395e-01	ci left: 2.579941e-04	ci right 2.878050e-04	k: 1303	n:4780000
FANCD2   4780000 perm   10038 sec   (476 perm/sec)   p_kst 2.725941e-04   p_cons 8.032927e-01   p_joint 4.851464e-04

Joint ci ratio: 8.118998e-02	ci left: 4.666775e-04	ci right 5.063730e-04	k: 2329	n:4790000
Cons ci ratio: 8.863387e-04	ci left: 8.029306e-01	ci right 8.036428e-01	k: 3847744	n:4790000
KS ci ratio: 1.082493e-01	ci left: 2.588772e-04	ci right 2.887052e-04	k: 1310	n:4790000
FANCD2   4790000 perm   10076 sec   (475 perm/sec)   p_kst 2.734864e-04   p_cons 8.032868e-01   p_joint 4.862213e-04

Joint ci ratio: 8.106827e-02	ci left: 4.671340e-04	ci right 5.068060e-04	k: 2336	n:4800000
Cons ci ratio: 8.853974e-04	ci left: 8.029372e-01	ci right 8.036487e-01	k: 3855807	n:4800000
KS ci ratio: 1.080435e-01	ci left: 2.593514e-04	ci right 2.891735e-04	k: 1315	n:4800000
FANCD2   4800000 perm   10117 sec   (474 perm/sec)   p_kst 2.739583e-04   p_cons 8.032931e-01   p_joint 4.866667e-04

Joint ci ratio: 8.099899e-02	ci left: 4.669775e-04	ci right 5.066008e-04	k: 2340	n:4810000
Cons ci ratio: 8.844608e-04	ci left: 8.029432e-01	ci right 8.036539e-01	k: 3863867	n:4810000
KS ci ratio: 1.078388e-01	ci left: 2.598237e-04	ci right 2.896399e-04	k: 1320	n:4810000
FANCD2   4810000 perm   10156 sec   (474 perm/sec)   p_kst 2.744283e-04   p_cons 8.032988e-01   p_joint 4.864865e-04

Joint ci ratio: 8.091263e-02	ci left: 4.670250e-04	ci right 5.066081e-04	k: 2345	n:4820000
Cons ci ratio: 8.835457e-04	ci left: 8.029426e-01	ci right 8.036525e-01	k: 3871895	n:4820000
KS ci ratio: 1.077572e-01	ci left: 2.596884e-04	ci right 2.894651e-04	k: 1322	n:4820000
FANCD2   4820000 perm   10197 sec   (473 perm/sec)   p_kst 2.742739e-04   p_cons 8.032977e-01   p_joint 4.865145e-04

Joint ci ratio: 8.080935e-02	ci left: 4.672752e-04	ci right 5.068265e-04	k: 2351	n:4830000
Cons ci ratio: 8.826121e-04	ci left: 8.029496e-01	ci right 8.036588e-01	k: 3879960	n:4830000
KS ci ratio: 1.076353e-01	ci left: 2.597551e-04	ci right 2.895036e-04	k: 1325	n:4830000
FANCD2   4830000 perm   10237 sec   (472 perm/sec)   p_kst 2.743271e-04   p_cons 8.033043e-01   p_joint 4.867495e-04

Joint ci ratio: 8.074073e-02	ci left: 4.671196e-04	ci right 5.066225e-04	k: 2355	n:4840000
Cons ci ratio: 8.816612e-04	ci left: 8.029638e-01	ci right 8.036722e-01	k: 3888060	n:4840000
KS ci ratio: 1.075947e-01	ci left: 2.594195e-04	ci right 2.891176e-04	k: 1326	n:4840000
FANCD2   4840000 perm   10279 sec   (471 perm/sec)   p_kst 2.739669e-04   p_cons 8.033182e-01   p_joint 4.865702e-04

Joint ci ratio: 8.065519e-02	ci left: 4.671665e-04	ci right 5.066297e-04	k: 2360	n:4850000
Cons ci ratio: 8.807329e-04	ci left: 8.029709e-01	ci right 8.036786e-01	k: 3896126	n:4850000
KS ci ratio: 1.075542e-01	ci left: 2.590852e-04	ci right 2.887333e-04	k: 1327	n:4850000
FANCD2   4850000 perm   10319 sec   (470 perm/sec)   p_kst 2.736082e-04   p_cons 8.033249e-01   p_joint 4.865979e-04

Joint ci ratio: 8.058696e-02	ci left: 4.670117e-04	ci right 5.064268e-04	k: 2364	n:4860000
Cons ci ratio: 8.798517e-04	ci left: 8.029622e-01	ci right 8.036692e-01	k: 3904115	n:4860000
KS ci ratio: 1.073926e-01	ci left: 2.593530e-04	ci right 2.889843e-04	k: 1331	n:4860000
FANCD2   4860000 perm   10359 sec   (469 perm/sec)   p_kst 2.738683e-04   p_cons 8.033158e-01   p_joint 4.864198e-04

Joint ci ratio: 8.051890e-02	ci left: 4.668576e-04	ci right 5.062249e-04	k: 2368	n:4870000
Cons ci ratio: 8.789326e-04	ci left: 8.029680e-01	ci right 8.036743e-01	k: 3912175	n:4870000
KS ci ratio: 1.073121e-01	ci left: 2.592201e-04	ci right 2.888126e-04	k: 1333	n:4870000
FANCD2   4870000 perm   10399 sec   (468 perm/sec)   p_kst 2.737166e-04   p_cons 8.033214e-01   p_joint 4.862423e-04

Joint ci ratio: 8.043406e-02	ci left: 4.669049e-04	ci right 5.062327e-04	k: 2373	n:4880000
Cons ci ratio: 8.780146e-04	ci left: 8.029745e-01	ci right 8.036800e-01	k: 3920238	n:4880000
KS ci ratio: 1.072317e-01	ci left: 2.590878e-04	ci right 2.886416e-04	k: 1335	n:4880000
FANCD2   4880000 perm   10439 sec   (467 perm/sec)   p_kst 2.735656e-04   p_cons 8.033275e-01   p_joint 4.862705e-04

Joint ci ratio: 8.034949e-02	ci left: 4.669520e-04	ci right 5.062405e-04	k: 2378	n:4890000
Cons ci ratio: 8.771682e-04	ci left: 8.029562e-01	ci right 8.036610e-01	k: 3928180	n:4890000
KS ci ratio: 1.071916e-01	ci left: 2.587570e-04	ci right 2.882613e-04	k: 1336	n:4890000
FANCD2   4890000 perm   10479 sec   (467 perm/sec)   p_kst 2.732106e-04   p_cons 8.033088e-01   p_joint 4.862986e-04

Joint ci ratio: 8.024835e-02	ci left: 4.671990e-04	ci right 5.064564e-04	k: 2384	n:4900000
Cons ci ratio: 8.762722e-04	ci left: 8.029567e-01	ci right 8.036609e-01	k: 3936214	n:4900000
KS ci ratio: 1.071116e-01	ci left: 2.586261e-04	ci right 2.880921e-04	k: 1338	n:4900000
FANCD2   4900000 perm   10519 sec   (466 perm/sec)   p_kst 2.730612e-04   p_cons 8.033090e-01   p_joint 4.865306e-04

Joint ci ratio: 8.011407e-02	ci left: 4.678441e-04	ci right 5.070869e-04	k: 2392	n:4910000
Cons ci ratio: 8.753501e-04	ci left: 8.029677e-01	ci right 8.036711e-01	k: 3944299	n:4910000
KS ci ratio: 1.069519e-01	ci left: 2.588922e-04	ci right 2.883419e-04	k: 1342	n:4910000
FANCD2   4910000 perm   10560 sec   (465 perm/sec)   p_kst 2.733198e-04   p_cons 8.033196e-01   p_joint 4.871690e-04

Joint ci ratio: 8.003051e-02	ci left: 4.678891e-04	ci right 5.070929e-04	k: 2397	n:4920000
Cons ci ratio: 8.745040e-04	ci left: 8.029521e-01	ci right 8.036548e-01	k: 3952254	n:4920000
KS ci ratio: 1.069121e-01	ci left: 2.585638e-04	ci right 2.879645e-04	k: 1343	n:4920000
FANCD2   4920000 perm   10599 sec   (464 perm/sec)   p_kst 2.729675e-04   p_cons 8.033037e-01   p_joint 4.871951e-04

Joint ci ratio: 7.994720e-02	ci left: 4.679340e-04	ci right 5.070988e-04	k: 2402	n:4930000
Cons ci ratio: 8.736257e-04	ci left: 8.029492e-01	ci right 8.036512e-01	k: 3960271	n:4930000
KS ci ratio: 1.067930e-01	ci left: 2.586316e-04	ci right 2.880052e-04	k: 1346	n:4930000
FANCD2   4930000 perm   10640 sec   (463 perm/sec)   p_kst 2.730223e-04   p_cons 8.033004e-01   p_joint 4.872211e-04

Joint ci ratio: 7.991398e-02	ci left: 4.673835e-04	ci right 5.064852e-04	k: 2404	n:4940000
Cons ci ratio: 8.727253e-04	ci left: 8.029553e-01	ci right 8.036565e-01	k: 3968332	n:4940000
KS ci ratio: 1.067931e-01	ci left: 2.581081e-04	ci right 2.874221e-04	k: 1346	n:4940000
FANCD2   4940000 perm   10681 sec   (463 perm/sec)   p_kst 2.724696e-04   p_cons 8.033061e-01   p_joint 4.866397e-04

Joint ci ratio: 7.978137e-02	ci left: 4.680232e-04	ci right 5.071104e-04	k: 2412	n:4950000
Cons ci ratio: 8.718133e-04	ci left: 8.029665e-01	ci right 8.036671e-01	k: 3976419	n:4950000
KS ci ratio: 1.067139e-01	ci left: 2.579799e-04	ci right 2.872563e-04	k: 1348	n:4950000
FANCD2   4950000 perm   10720 sec   (462 perm/sec)   p_kst 2.723232e-04   p_cons 8.033170e-01   p_joint 4.872727e-04

Joint ci ratio: 7.973184e-02	ci left: 4.676724e-04	ci right 5.067049e-04	k: 2415	n:4960000
Cons ci ratio: 8.709257e-04	ci left: 8.029699e-01	ci right 8.036697e-01	k: 3984467	n:4960000
KS ci ratio: 1.066349e-01	ci left: 2.578522e-04	ci right 2.870912e-04	k: 1350	n:4960000
FANCD2   4960000 perm   10762 sec   (461 perm/sec)   p_kst 2.721774e-04   p_cons 8.033200e-01   p_joint 4.868952e-04

Joint ci ratio: 7.961656e-02	ci left: 4.681118e-04	ci right 5.071219e-04	k: 2422	n:4970000
Cons ci ratio: 8.700271e-04	ci left: 8.029782e-01	ci right 8.036773e-01	k: 3992540	n:4970000
KS ci ratio: 1.064773e-01	ci left: 2.581168e-04	ci right 2.873398e-04	k: 1354	n:4970000
FANCD2   4970000 perm   10802 sec   (460 perm/sec)   p_kst 2.724346e-04   p_cons 8.033280e-01   p_joint 4.873239e-04

Joint ci ratio: 7.956734e-02	ci left: 4.677622e-04	ci right 5.067180e-04	k: 2425	n:4980000
Cons ci ratio: 8.691582e-04	ci left: 8.029767e-01	ci right 8.036751e-01	k: 4000564	n:4980000
KS ci ratio: 1.064381e-01	ci left: 2.577940e-04	ci right 2.869689e-04	k: 1355	n:4980000
FANCD2   4980000 perm   10844 sec   (459 perm/sec)   p_kst 2.720884e-04   p_cons 8.033261e-01   p_joint 4.869478e-04

Joint ci ratio: 7.951820e-02	ci left: 4.674140e-04	ci right 5.063157e-04	k: 2428	n:4990000
Cons ci ratio: 8.682771e-04	ci left: 8.029806e-01	ci right 8.036783e-01	k: 4008615	n:4990000
KS ci ratio: 1.063989e-01	ci left: 2.574724e-04	ci right 2.865996e-04	k: 1356	n:4990000
FANCD2   4990000 perm   10885 sec   (458 perm/sec)   p_kst 2.717435e-04   p_cons 8.033297e-01   p_joint 4.865731e-04

Joint ci ratio: 7.942016e-02	ci left: 4.676554e-04	ci right 5.065269e-04	k: 2434	n:5000000
Cons ci ratio: 8.674371e-04	ci left: 8.029705e-01	ci right 8.036675e-01	k: 4016596	n:5000000
KS ci ratio: 1.062815e-01	ci left: 2.575415e-04	ci right 2.866423e-04	k: 1359	n:5000000
FANCD2   5000000 perm   10928 sec   (458 perm/sec)   p_kst 2.718000e-04   p_cons 8.033192e-01   p_joint 4.868000e-04

Outputting figure to mutsig2_images.part000000000062/FANCD2.2_4663_5000000_0.0002718_0.80332_0.0004868.png
                gene_name: FANCD2
               theta_stop: 0.11 
                    nperm: 5000000 
                     p_ks: 0.00027 
        ci_ks_bounds_left: 0.00026 
       ci_ks_bounds_right: 0.00029 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.00049 
     ci_joint_bounds_left: 0.00047 
    ci_joint_bounds_right: 0.00051 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000062
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 62 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1538>
Subject: Job 9877144: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1538>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000063> was used as the working directory.
Started at Fri Oct  5 22:39:23 2012
Results reported at Fri Oct  5 22:42:40 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000063.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000063.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 63  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000063.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    201.44 sec.
    Max Memory :      2380 MB
    Max Swap   :      4772 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
63
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 63
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 63: processing genes 5623 - 5712
Calculating significance of each gene.
Using projection method.
5623	FAR2	1
5624	FARP1	1
5625	FARP2	1
5626	FARS2	1
5627	FARSA	1
5628	FARSB	3.465886e-02
5629	FAS	1
5630	FASLG	9.111391e-02
5631	FASN	1
5632	FASTK	1
5633	FASTKD1	1
5634	FASTKD2	1.148585e-02
5635	FASTKD3	1
5636	FASTKD5	1
5637	FAT1	2.197575e-01
5638	FAT2	3.040826e-01
5639	FAT3	1
5640	FAT4	6.210111e-01
5641	FATE1	1
5642	FAU	1
5643	FBF1	1
5644	FBL	1
5645	FBLIM1	8.158955e-02
5646	FBLN1	1
5647	FBLN2	1
5648	FBLN5	1
5649	FBLN7	1
5650	FBN1	3.692574e-02
5651	FBN2	3.780672e-01
5652	FBN3	5.588361e-01
5653	FBP1	1
5654	FBP2	1
5655	FBRS	1
5656	FBXL12	1
5657	FBXL13	1
5658	FBXL14	1
5659	FBXL15	1
5660	FBXL16	1
5661	FBXL17	1
5662	FBXL18	1
5663	FBXL19	1
5664	FBXL2	1
5665	FBXL20	1
5666	FBXL21	1
5667	FBXL22	1
5668	FBXL3	1
5669	FBXL4	6.500275e-02
5670	FBXL5	1
5671	FBXL6	1
5672	FBXL7	1
5673	FBXL8	1
5674	FBXO10	1
5675	FBXO11	1
5676	FBXO15	1
5677	FBXO16	1
5678	FBXO17	1
5679	FBXO18	1.087170e-01
5680	FBXO2	1
5681	FBXO21	1
5682	FBXO22	1
5683	FBXO24	1
5684	FBXO25	1
5685	FBXO27	1
5686	FBXO28	1
5687	FBXO3	1
5688	FBXO30	1
5689	FBXO31	1
5690	FBXO32	1
5691	FBXO33	1
5692	FBXO34	1.739892e-01
5693	FBXO36	1
5694	FBXO38	1
5695	FBXO39	1
5696	FBXO4	3.805038e-03
5697	FBXO40	1
5698	FBXO41	1
5699	FBXO42	1
5700	FBXO43	1
5701	FBXO44	1
5702	FBXO45	1
5703	FBXO46	1
5704	FBXO47	1
5705	FBXO48	1
5706	FBXO5	6.733856e-02
5707	FBXO6	1
5708	FBXO7	1
5709	FBXO8	1
5710	FBXO9	1
5711	FBXW10	1.944803e-01
5712	FBXW11	1
Done

Running MutSig 2:
Scatter job 63: processing genes 5623 - 5712
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
FAT1
Processing conservation and coverage...
72% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.127305e-02	ci left: 7.641548e-01	ci right 7.806862e-01	k: 7725	n:10000
Cons ci ratio: 2.117623e-02	ci left: 7.657748e-01	ci right 7.822653e-01	k: 7741	n:10000
KS ci ratio: 3.679107e-02	ci left: 5.217618e-01	ci right 5.414198e-01	k: 5316	n:10000
FAT1   10000 perm   4 sec   (2437 perm/sec)   p_kst 5.316000e-01   p_cons 7.741000e-01   p_joint 7.725000e-01

Outputting figure to mutsig2_images.part000000000063/FAT1.5_13871_10000_0.5316_0.7741_0.7725.png
                gene_name: FAT1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 14 percent done.
FAT4
Processing conservation and coverage...
66% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.267076e-02	ci left: 4.477990e-01	ci right 4.674257e-01	k: 4576	n:10000
Cons ci ratio: 1.594303e-02	ci left: 8.511065e-01	ci right 8.648842e-01	k: 8581	n:10000
KS ci ratio: 6.440648e-02	ci left: 2.615144e-01	ci right 2.790196e-01	k: 2702	n:10000
FAT4   10000 perm   4 sec   (2287 perm/sec)   p_kst 2.702000e-01   p_cons 8.581000e-01   p_joint 4.576000e-01

Outputting figure to mutsig2_images.part000000000063/FAT4.4_15014_10000_0.2702_0.8581_0.4576.png
                gene_name: FAT4
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 29 percent done.
FBN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.807373e-02	ci left: 5.046513e-01	ci right 5.243403e-01	k: 5145	n:10000
Cons ci ratio: 5.285046e-02	ci left: 3.454159e-01	ci right 3.642687e-01	k: 3548	n:10000
KS ci ratio: 4.023461e-02	ci left: 4.770586e-01	ci right 4.967491e-01	k: 4869	n:10000
FBN1   10000 perm   3 sec   (3225 perm/sec)   p_kst 4.869000e-01   p_cons 3.548000e-01   p_joint 5.145000e-01

Outputting figure to mutsig2_images.part000000000063/FBN1.3_8876_10000_0.4869_0.3548_0.5145.png
                gene_name: FBN1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 43 percent done.
FASTKD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.027488e-02	ci left: 4.765590e-01	ci right 4.962490e-01	k: 4864	n:10000
Cons ci ratio: 5.055356e-02	ci left: 3.658968e-01	ci right 3.849758e-01	k: 3754	n:10000
KS ci ratio: 6.689629e-02	ci left: 2.469740e-01	ci right 2.641687e-01	k: 2555	n:10000
FASTKD2   10000 perm   2 sec   (5910 perm/sec)   p_kst 2.555000e-01   p_cons 3.754000e-01   p_joint 4.864000e-01

Outputting figure to mutsig2_images.part000000000063/FASTKD2.2_2177_10000_0.2555_0.3754_0.4864.png
                gene_name: FASTKD2
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 57 percent done.
FAT2
Processing conservation and coverage...
76% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.350978e-02	ci left: 2.131958e-01	ci right 2.295668e-01	k: 2213	n:10000
Cons ci ratio: 1.051078e-01	ci left: 1.156461e-01	ci right 1.285750e-01	k: 1220	n:10000
KS ci ratio: 1.689963e-02	ci left: 8.360254e-01	ci right 8.503741e-01	k: 8433	n:10000
FAT2   10000 perm   4 sec   (2670 perm/sec)   p_kst 8.433000e-01   p_cons 1.220000e-01   p_joint 2.213000e-01

Joint ci ratio: 5.788060e-02	ci left: 1.811226e-01	ci right 1.919687e-01	k: 3730	n:20000
Cons ci ratio: 7.491910e-02	ci left: 1.158711e-01	ci right 1.249396e-01	k: 2407	n:20000
KS ci ratio: 1.188131e-02	ci left: 8.397066e-01	ci right 8.497929e-01	k: 16896	n:20000
FAT2   20000 perm   8 sec   (2464 perm/sec)   p_kst 8.448000e-01   p_cons 1.203500e-01   p_joint 1.865000e-01

Outputting figure to mutsig2_images.part000000000063/FAT2.2_13142_20000_0.8448_0.12035_0.1865.png
                gene_name: FAT2
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 71 percent done.
FAT3
Processing conservation and coverage...
72% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.559385e-02	ci left: 6.920201e-01	ci right 7.100626e-01	k: 7011	n:10000
Cons ci ratio: 2.637165e-02	ci left: 6.792186e-01	ci right 6.974716e-01	k: 6884	n:10000
KS ci ratio: 5.838717e-02	ci left: 3.015367e-01	ci right 3.197737e-01	k: 3106	n:10000
FAT3   10000 perm   4 sec   (2505 perm/sec)   p_kst 3.106000e-01   p_cons 6.884000e-01   p_joint 7.011000e-01

Outputting figure to mutsig2_images.part000000000063/FAT3.2_13774_10000_0.3106_0.6884_0.7011.png
                gene_name: FAT3
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 86 percent done.
FBXO4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.417551e-02	ci left: 8.779709e-01	ci right 8.906043e-01	k: 8844	n:10000
KS ci ratio: 3.382151e-02	ci left: 5.634356e-01	ci right 5.829217e-01	k: 5732	n:10000
FBXO4   10000 perm   2 sec   (6546 perm/sec)   p_kst 5.732000e-01   p_cons 8.844000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000063/FBXO4.2_1218_10000_0.5732_0.8844_1.png
                gene_name: FBXO4
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000063
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 63 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1640>
Subject: Job 9877153: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1640>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000064> was used as the working directory.
Started at Fri Oct  5 22:39:23 2012
Results reported at Fri Oct  5 22:41:36 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000064.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000064.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 64  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000064.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    137.35 sec.
    Max Memory :      2122 MB
    Max Swap   :      4757 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
64
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 64
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 64: processing genes 5713 - 5803
Calculating significance of each gene.
Using projection method.
5713	FBXW12	1
5714	FBXW2	1
5715	FBXW4	1
5716	FBXW5	1
5717	FBXW7	1
5718	FBXW8	1
5719	FBXW9	1
5720	FCAMR	1.447824e-02
5721	FCAR	1
5722	FCER1A	1
5723	FCER1G	1
5724	FCER2	1
5725	FCF1	1
5726	FCGBP	6.913907e-04
5727	FCGR1A	1
5728	FCGR1B	1
5729	FCGR2A	1
5730	FCGR2B	1
5731	FCGR2C	1
5732	FCGR3A	7.751436e-02
5733	FCGR3B	5.390120e-02
5734	FCGRT	1
5735	FCHO1	1
5736	FCHO2	1
5737	FCHSD1	1
5738	FCHSD2	1
5739	FCN1	9.610619e-02
5740	FCN2	1
5741	FCN3	1
5742	FCRL1	1
5743	FCRL2	1
5744	FCRL3	1
5745	FCRL4	5.844186e-03
5746	FCRL5	1
5747	FCRL6	1
5748	FCRLA	1
5749	FCRLB	1
5750	FDFT1	1
5751	FDPS	1
5752	FDX1	1
5753	FDX1L	1
5754	FDXACB1	1
5755	FDXR	1
5756	FECH	1
5757	FEM1A	1
5758	FEM1B	1
5759	FEM1C	1
5760	FEN1	1
5761	FER	1
5762	FER1L5	7.734933e-02
5763	FER1L6	2.356820e-01
5764	FERD3L	1
5765	FERMT1	1.780926e-01
5766	FERMT2	1.026028e-01
5767	FERMT3	2.337258e-01
5768	FES	2.189119e-01
5769	FETUB	1
5770	FEV	1
5771	FEZ1	1
5772	FEZ2	1
5773	FEZF1	1
5774	FEZF2	1
5775	FFAR1	1
5776	FFAR2	1
5777	FFAR3	1
5778	FGA	3.401945e-03
5779	FGB	1
5780	FGD1	1
5781	FGD2	2.099678e-02
5782	FGD3	1
5783	FGD4	1
5784	FGD5	1
5785	FGD6	9.706573e-02
5786	FGF1	1
5787	FGF10	1
5788	FGF11	1
5789	FGF12	1
5790	FGF13	1
5791	FGF14	1
5792	FGF16	1
5793	FGF17	1
5794	FGF18	1
5795	FGF19	1
5796	FGF2	1
5797	FGF20	1
5798	FGF21	1
5799	FGF22	1
5800	FGF23	1
5801	FGF3	1
5802	FGF4	1
5803	FGF5	1
Done

Running MutSig 2:
Scatter job 64: processing genes 5713 - 5803
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
FCGBP
Processing conservation and coverage...
61% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.776672e-02	ci left: 1.946611e-01	ci right 2.105125e-01	k: 2025	n:10000
Cons ci ratio: 2.818337e-02	ci left: 6.498149e-01	ci right 6.684923e-01	k: 6592	n:10000
KS ci ratio: 1.102633e-01	ci left: 1.059801e-01	ci right 1.184468e-01	k: 1121	n:10000
FCGBP   10000 perm   4 sec   (2546 perm/sec)   p_kst 1.121000e-01   p_cons 6.592000e-01   p_joint 2.025000e-01

Joint ci ratio: 5.002470e-02	ci left: 2.289890e-01	ci right 2.407882e-01	k: 4697	n:20000
Cons ci ratio: 1.993609e-02	ci left: 6.524327e-01	ci right 6.656211e-01	k: 13181	n:20000
KS ci ratio: 7.846254e-02	ci left: 1.065799e-01	ci right 1.153335e-01	k: 2218	n:20000
FCGBP   20000 perm   13 sec   (1568 perm/sec)   p_kst 1.109000e-01   p_cons 6.590500e-01   p_joint 2.348500e-01

Outputting figure to mutsig2_images.part000000000064/FCGBP.7_16362_20000_0.1109_0.65905_0.23485.png
                gene_name: FCGBP
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 25 percent done.
FGA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.008264e-02	ci left: 3.702737e-01	ci right 3.893963e-01	k: 3798	n:10000
Cons ci ratio: 2.623654e-02	ci left: 6.814356e-01	ci right 6.996533e-01	k: 6906	n:10000
KS ci ratio: 8.117314e-02	ci left: 1.813680e-01	ci right 1.968136e-01	k: 1890	n:10000
FGA   10000 perm   2 sec   (5549 perm/sec)   p_kst 1.890000e-01   p_cons 6.906000e-01   p_joint 3.798000e-01

Outputting figure to mutsig2_images.part000000000064/FGA.3_2669_10000_0.189_0.6906_0.3798.png
                gene_name: FGA
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 50 percent done.
FCRL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.137052e-02	ci left: 4.631735e-01	ci right 4.828422e-01	k: 4730	n:10000
KS ci ratio: 2.038162e-02	ci left: 7.790450e-01	ci right 7.951874e-01	k: 7872	n:10000
FCRL4   10000 perm   2 sec   (6154 perm/sec)   p_kst 7.872000e-01   p_cons 4.730000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000064/FCRL4.2_1596_10000_0.7872_0.473_1.png
                gene_name: FCRL4
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
FGD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.452213e-03	ci left: 9.947879e-01	ci right 9.973095e-01	k: 9962	n:10000
Cons ci ratio: 1.159567e-02	ci left: 9.140975e-01	ci right 9.248566e-01	k: 9196	n:10000
KS ci ratio: 1.139871e-02	ci left: 9.166731e-01	ci right 9.272795e-01	k: 9221	n:10000
FGD2   10000 perm   2 sec   (6170 perm/sec)   p_kst 9.221000e-01   p_cons 9.196000e-01   p_joint 9.962000e-01

Outputting figure to mutsig2_images.part000000000064/FGD2.2_2032_10000_0.9221_0.9196_0.9962.png
                gene_name: FGD2
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1.00 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 1.00 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000064
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 64 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1641>
Subject: Job 9877162: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1641>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000065> was used as the working directory.
Started at Fri Oct  5 22:39:23 2012
Results reported at Sat Oct  6 01:43:53 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000065.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000065.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 65  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000065.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  11155.35 sec.
    Max Memory :      2209 MB
    Max Swap   :      4719 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
65
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 65
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 65: processing genes 5804 - 5894
Calculating significance of each gene.
Using projection method.
5804	FGF6	1
5805	FGF7	1
5806	FGF8	1
5807	FGF9	1
5808	FGFBP1	1
5809	FGFBP2	1
5810	FGFBP3	1
5811	FGFR1	1
5812	FGFR1OP	1
5813	FGFR1OP2	3.863437e-03
5814	FGFR2	1
5815	FGFR3	1
5816	FGFR4	1
5817	FGFRL1	1
5818	FGG	1
In gene FGGY the following bins exceed PROBCAP:
    PRAD-EJ-5511	categ 6	N = 1792    n = 1	mu =   2.34e-07
5819	FGGY	5.389328e-02
5820	FGL1	1
5821	FGL2	1
5822	FGR	1
5823	FH	1
5824	FHDC1	1
5825	FHIT	7.778037e-03
5826	FHL1	1
5827	FHL2	1
5828	FHL3	1
5829	FHL5	1
5830	FHOD1	1
5831	FHOD3	1
5832	FIBCD1	1
5833	FIBIN	1
5834	FIBP	1
5835	FICD	1
5836	FIG4	1
5837	FIGF	1
5838	FIGLA	1
5839	FIGN	1.103317e-02
5840	FIGNL1	1.743419e-01
5841	FILIP1	6.694552e-02
5842	FILIP1L	2.869370e-01
In gene FIP1L1 the following bins exceed PROBCAP:
    PRAD-CH-5761	categ 6	N = 1858    n = 1	mu =   2.99e-07
5843	FIP1L1	1.568522e-04
5844	FIS1	1
5845	FITM1	1
5846	FITM2	1
5847	FIZ1	1
5848	FJX1	1
5849	FKBP10	1
5850	FKBP11	1
5851	FKBP14	1
5852	FKBP15	1
5853	FKBP1A	1
5854	FKBP1B	1
5855	FKBP2	1
5856	FKBP3	1
5857	FKBP4	1.226461e-02
5858	FKBP5	8.043811e-02
5859	FKBP6	1
5860	FKBP7	1
5861	FKBP8	1
5862	FKBP9	1
5863	FKBPL	1
5864	FKRP	1
5865	FKSG83	1
5866	FKTN	1
5867	FLAD1	1
5868	FLCN	1
5869	FLG	1
5870	FLG2	4.880540e-02
5871	FLI1	1
5872	FLII	3.607838e-01
5873	FLJ10357	1
5874	FLJ35220	1
5875	FLJ37543	1
5876	FLJ43860	1
5877	FLJ44635	1
5878	FLJ46321	1
5879	FLNA	1
5880	FLNB	1
5881	FLNC	1
5882	FLOT1	1
5883	FLOT2	1
5884	FLRT1	1
5885	FLRT2	1
5886	FLRT3	1
5887	FLT1	1
5888	FLT3	1
5889	FLT3LG	2.997815e-02
5890	FLT4	1
5891	FLVCR1	1
5892	FLVCR2	1
5893	FLYWCH1	1
5894	FLYWCH2	1
Done

Running MutSig 2:
Scatter job 65: processing genes 5804 - 5894
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
FIP1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.023926e-01	ci left: 7.512676e-03	ci right 1.138119e-02	k: 93	n:10000
Cons ci ratio: 1.922228e-03	ci left: 9.965509e-01	ci right 9.985415e-01	k: 9977	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
FIP1L1   10000 perm   2 sec   (5787 perm/sec)   p_kst 1.000000e-04   p_cons 9.977000e-01   p_joint 9.300000e-03

Joint ci ratio: 5.481959e-01	ci left: 1.856100e-03	ci right 3.294626e-03	k: 50	n:20000
Cons ci ratio: 1.256144e-03	ci left: 9.972776e-01	ci right 9.985708e-01	k: 19960	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
FIP1L1   20000 perm   6 sec   (3096 perm/sec)   p_kst 5.000000e-05   p_cons 9.980000e-01   p_joint 2.500000e-03

Joint ci ratio: 6.354945e-01	ci left: 8.685245e-04	ci right 1.699591e-03	k: 37	n:30000
Cons ci ratio: 1.046363e-03	ci left: 9.973140e-01	ci right 9.983859e-01	k: 29937	n:30000
KS ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
FIP1L1   30000 perm   9 sec   (3500 perm/sec)   p_kst 3.333333e-05   p_cons 9.979000e-01   p_joint 1.233333e-03

Joint ci ratio: 5.234587e-01	ci left: 1.036001e-03	ci right 1.789380e-03	k: 55	n:40000
Cons ci ratio: 9.461192e-04	ci left: 9.971800e-01	ci right 9.981455e-01	k: 39908	n:40000
KS ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
FIP1L1   40000 perm   11 sec   (3722 perm/sec)   p_kst 2.500000e-05   p_cons 9.977000e-01   p_joint 1.375000e-03

Joint ci ratio: 7.277073e-01	ci left: 3.721472e-04	ci right 8.092550e-04	k: 28	n:50000
Cons ci ratio: 8.489771e-04	ci left: 9.972180e-01	ci right 9.980826e-01	k: 49884	n:50000
KS ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
FIP1L1   50000 perm   13 sec   (3853 perm/sec)   p_kst 2.000000e-05   p_cons 9.976800e-01   p_joint 5.600000e-04

Joint ci ratio: 6.821911e-01	ci left: 3.648273e-04	ci right 7.528249e-04	k: 32	n:60000
Cons ci ratio: 7.876370e-04	ci left: 9.971750e-01	ci right 9.979756e-01	k: 59856	n:60000
KS ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
FIP1L1   60000 perm   15 sec   (3946 perm/sec)   p_kst 1.666667e-05   p_cons 9.976000e-01   p_joint 5.333333e-04

Joint ci ratio: 7.277697e-01	ci left: 2.658130e-04	ci right 5.780599e-04	k: 28	n:70000
Cons ci ratio: 7.201566e-04	ci left: 9.972704e-01	ci right 9.980017e-01	k: 69836	n:70000
KS ci ratio: 2.263148e+00	ci left: 3.460151e-06	ci right 1.032060e-04	k: 2	n:70000
FIP1L1   70000 perm   18 sec   (3973 perm/sec)   p_kst 2.857143e-05   p_cons 9.976571e-01   p_joint 4.000000e-04

Joint ci ratio: 7.039120e-01	ci left: 2.530248e-04	ci right 5.352929e-04	k: 30	n:80000
Cons ci ratio: 6.726239e-04	ci left: 9.973029e-01	ci right 9.979852e-01	k: 79813	n:80000
KS ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
FIP1L1   80000 perm   20 sec   (3983 perm/sec)   p_kst 1.250000e-05   p_cons 9.976625e-01   p_joint 3.750000e-04

Joint ci ratio: 6.928376e-01	ci left: 2.340449e-04	ci right 4.888761e-04	k: 31	n:90000
Cons ci ratio: 6.258391e-04	ci left: 9.973886e-01	ci right 9.980231e-01	k: 89795	n:90000
KS ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
FIP1L1   90000 perm   23 sec   (3966 perm/sec)   p_kst 1.111111e-05   p_cons 9.977222e-01   p_joint 3.444444e-04

Joint ci ratio: 7.155799e-01	ci left: 1.942259e-04	ci right 4.164620e-04	k: 29	n:100000
Cons ci ratio: 5.912642e-04	ci left: 9.974258e-01	ci right 9.980248e-01	k: 99774	n:100000
KS ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
FIP1L1   100000 perm   25 sec   (3946 perm/sec)   p_kst 1.000000e-05   p_cons 9.977400e-01   p_joint 2.900000e-04

Joint ci ratio: 6.822789e-01	ci left: 1.989898e-04	ci right 4.106522e-04	k: 32	n:110000
Cons ci ratio: 5.561179e-04	ci left: 9.975050e-01	ci right 9.980682e-01	k: 109758	n:110000
KS ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
FIP1L1   110000 perm   28 sec   (3919 perm/sec)   p_kst 9.090909e-06   p_cons 9.978000e-01   p_joint 2.909091e-04

Joint ci ratio: 6.721764e-01	ci left: 1.893047e-04	ci right 3.861808e-04	k: 33	n:120000
Cons ci ratio: 5.373618e-04	ci left: 9.974742e-01	ci right 9.980180e-01	k: 119731	n:120000
KS ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
FIP1L1   120000 perm   31 sec   (3888 perm/sec)   p_kst 8.333333e-06   p_cons 9.977583e-01   p_joint 2.750000e-04

Joint ci ratio: 6.625092e-01	ci left: 1.811296e-04	ci right 3.654548e-04	k: 34	n:130000
Cons ci ratio: 5.122857e-04	ci left: 9.975219e-01	ci right 9.980401e-01	k: 129713	n:130000
KS ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
FIP1L1   130000 perm   34 sec   (3840 perm/sec)   p_kst 7.692308e-06   p_cons 9.977923e-01   p_joint 2.615385e-04

Joint ci ratio: 6.276127e-01	ci left: 1.920859e-04	ci right 3.725381e-04	k: 38	n:140000
Cons ci ratio: 4.879126e-04	ci left: 9.975856e-01	ci right 9.980791e-01	k: 139698	n:140000
KS ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
FIP1L1   140000 perm   37 sec   (3782 perm/sec)   p_kst 7.142857e-06   p_cons 9.978429e-01   p_joint 2.714286e-04

Joint ci ratio: 7.839321e-01	ci left: 1.025176e-04	ci right 2.380580e-04	k: 24	n:150000
Cons ci ratio: 4.643007e-04	ci left: 9.976621e-01	ci right 9.981316e-01	k: 149686	n:150000
KS ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
FIP1L1   150000 perm   40 sec   (3747 perm/sec)   p_kst 6.666667e-06   p_cons 9.979067e-01   p_joint 1.600000e-04

Joint ci ratio: 7.839363e-01	ci left: 9.611012e-05	ci right 2.231799e-04	k: 24	n:160000
Cons ci ratio: 4.461932e-04	ci left: 9.977028e-01	ci right 9.981539e-01	k: 159670	n:160000
KS ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
FIP1L1   160000 perm   43 sec   (3706 perm/sec)   p_kst 6.250000e-06   p_cons 9.979375e-01   p_joint 1.500000e-04

Joint ci ratio: 8.992568e-01	ci left: 6.275376e-05	ci right 1.673346e-04	k: 18	n:170000
Cons ci ratio: 4.318295e-04	ci left: 9.977202e-01	ci right 9.981566e-01	k: 169651	n:170000
KS ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
FIP1L1   170000 perm   46 sec   (3670 perm/sec)   p_kst 5.882353e-06   p_cons 9.979471e-01   p_joint 1.058824e-04

Joint ci ratio: 8.764875e-01	ci left: 6.355250e-05	ci right 1.648332e-04	k: 19	n:180000
Cons ci ratio: 4.227226e-04	ci left: 9.976950e-01	ci right 9.981220e-01	k: 179625	n:180000
KS ci ratio: 2.771835e+00	ci left: 1.406545e-07	ci right 3.095318e-05	k: 1	n:180000
FIP1L1   180000 perm   50 sec   (3628 perm/sec)   p_kst 5.555556e-06   p_cons 9.979167e-01   p_joint 1.055556e-04

Joint ci ratio: 7.839464e-01	ci left: 8.093453e-05	ci right 1.879421e-04	k: 24	n:190000
Cons ci ratio: 4.099450e-04	ci left: 9.977169e-01	ci right 9.981309e-01	k: 189607	n:190000
KS ci ratio: 2.771837e+00	ci left: 1.332516e-07	ci right 2.932409e-05	k: 1	n:190000
FIP1L1   190000 perm   53 sec   (3586 perm/sec)   p_kst 5.263158e-06   p_cons 9.979316e-01   p_joint 1.263158e-04

Joint ci ratio: 8.001166e-01	ci left: 7.290149e-05	ci right 1.725515e-04	k: 23	n:200000
Cons ci ratio: 4.030561e-04	ci left: 9.976842e-01	ci right 9.980911e-01	k: 199579	n:200000
KS ci ratio: 2.771838e+00	ci left: 1.265890e-07	ci right 2.785790e-05	k: 1	n:200000
FIP1L1   200000 perm   56 sec   (3541 perm/sec)   p_kst 5.000000e-06   p_cons 9.978950e-01   p_joint 1.150000e-04

Joint ci ratio: 7.407592e-01	ci left: 8.473104e-05	ci right 1.870592e-04	k: 27	n:210000
Cons ci ratio: 3.950737e-04	ci left: 9.976699e-01	ci right 9.980686e-01	k: 209554	n:210000
KS ci ratio: 2.771839e+00	ci left: 1.205610e-07	ci right 2.653135e-05	k: 1	n:210000
FIP1L1   210000 perm   60 sec   (3502 perm/sec)   p_kst 4.761905e-06   p_cons 9.978762e-01   p_joint 1.285714e-04

Joint ci ratio: 7.156404e-01	ci left: 8.828243e-05	ci right 1.893075e-04	k: 29	n:220000
Cons ci ratio: 3.842164e-04	ci left: 9.976950e-01	ci right 9.980826e-01	k: 219537	n:220000
KS ci ratio: 2.771840e+00	ci left: 1.150809e-07	ci right 2.532539e-05	k: 1	n:220000
FIP1L1   220000 perm   64 sec   (3463 perm/sec)   p_kst 4.545455e-06   p_cons 9.978955e-01   p_joint 1.318182e-04

Joint ci ratio: 7.040038e-01	ci left: 8.800548e-05	ci right 1.861986e-04	k: 30	n:230000
Cons ci ratio: 3.749588e-04	ci left: 9.977089e-01	ci right 9.980871e-01	k: 229518	n:230000
KS ci ratio: 2.771841e+00	ci left: 1.100774e-07	ci right 2.422430e-05	k: 1	n:230000
FIP1L1   230000 perm   67 sec   (3418 perm/sec)   p_kst 4.347826e-06   p_cons 9.979043e-01   p_joint 1.304348e-04

Joint ci ratio: 6.823361e-01	ci left: 9.120163e-05	ci right 1.882217e-04	k: 32	n:240000
Cons ci ratio: 3.656017e-04	ci left: 9.977304e-01	ci right 9.980991e-01	k: 239501	n:240000
KS ci ratio: 2.771841e+00	ci left: 1.054909e-07	ci right 2.321496e-05	k: 1	n:240000
FIP1L1   240000 perm   71 sec   (3373 perm/sec)   p_kst 4.166667e-06   p_cons 9.979208e-01   p_joint 1.333333e-04

Joint ci ratio: 6.625532e-01	ci left: 9.418573e-05	ci right 1.900412e-04	k: 34	n:250000
Cons ci ratio: 3.558526e-04	ci left: 9.977627e-01	ci right 9.981216e-01	k: 249487	n:250000
KS ci ratio: 2.263195e+00	ci left: 9.688386e-07	ci right 2.889845e-05	k: 2	n:250000
FIP1L1   250000 perm   75 sec   (3333 perm/sec)   p_kst 8.000000e-06   p_cons 9.979480e-01   p_joint 1.360000e-04

Joint ci ratio: 6.625551e-01	ci left: 9.056314e-05	ci right 1.827321e-04	k: 34	n:260000
Cons ci ratio: 3.494130e-04	ci left: 9.977605e-01	ci right 9.981128e-01	k: 259465	n:260000
KS ci ratio: 2.263196e+00	ci left: 9.315755e-07	ci right 2.778698e-05	k: 2	n:260000
FIP1L1   260000 perm   79 sec   (3290 perm/sec)   p_kst 7.692308e-06   p_cons 9.979423e-01   p_joint 1.307692e-04

Joint ci ratio: 6.532886e-01	ci left: 9.029340e-05	ci right 1.802789e-04	k: 35	n:270000
Cons ci ratio: 3.451532e-04	ci left: 9.977354e-01	ci right 9.980834e-01	k: 269437	n:270000
KS ci ratio: 2.263196e+00	ci left: 8.970727e-07	ci right 2.675784e-05	k: 2	n:270000
FIP1L1   270000 perm   83 sec   (3246 perm/sec)   p_kst 7.407407e-06   p_cons 9.979148e-01   p_joint 1.296296e-04

Joint ci ratio: 6.444003e-01	ci left: 9.005142e-05	ci right 1.779927e-04	k: 36	n:280000
Cons ci ratio: 3.386756e-04	ci left: 9.977420e-01	ci right 9.980833e-01	k: 279417	n:280000
KS ci ratio: 2.263197e+00	ci left: 8.650343e-07	ci right 2.580222e-05	k: 2	n:280000
FIP1L1   280000 perm   88 sec   (3198 perm/sec)   p_kst 7.142857e-06   p_cons 9.979179e-01   p_joint 1.285714e-04

Joint ci ratio: 6.532917e-01	ci left: 8.406616e-05	ci right 1.678461e-04	k: 35	n:290000
Cons ci ratio: 3.314436e-04	ci left: 9.977624e-01	ci right 9.980965e-01	k: 289401	n:290000
KS ci ratio: 2.263197e+00	ci left: 8.352055e-07	ci right 2.491249e-05	k: 2	n:290000
FIP1L1   290000 perm   92 sec   (3159 perm/sec)   p_kst 6.896552e-06   p_cons 9.979345e-01   p_joint 1.206897e-04

Joint ci ratio: 6.532930e-01	ci left: 8.126391e-05	ci right 1.622514e-04	k: 35	n:300000
Cons ci ratio: 3.270047e-04	ci left: 9.977504e-01	ci right 9.980799e-01	k: 299376	n:300000
KS ci ratio: 2.263198e+00	ci left: 8.073653e-07	ci right 2.408208e-05	k: 2	n:300000
FIP1L1   300000 perm   96 sec   (3123 perm/sec)   p_kst 6.666667e-06   p_cons 9.979200e-01   p_joint 1.166667e-04

Joint ci ratio: 7.839671e-01	ci left: 4.960465e-05	ci right 1.151917e-04	k: 24	n:310000
Cons ci ratio: 3.204788e-04	ci left: 9.977693e-01	ci right 9.980922e-01	k: 309360	n:310000
KS ci ratio: 2.771845e+00	ci left: 8.167035e-08	ci right 1.797291e-05	k: 1	n:310000
FIP1L1   310000 perm   100 sec   (3087 perm/sec)   p_kst 3.225806e-06   p_cons 9.979355e-01   p_joint 7.741935e-05

Joint ci ratio: 8.992816e-01	ci left: 3.333764e-05	ci right 8.889780e-05	k: 18	n:320000
Cons ci ratio: 3.164625e-04	ci left: 9.977579e-01	ci right 9.980767e-01	k: 319335	n:320000
KS ci ratio: 2.771846e+00	ci left: 7.911815e-08	ci right 1.741126e-05	k: 1	n:320000
FIP1L1   320000 perm   105 sec   (3050 perm/sec)   p_kst 3.125000e-06   p_cons 9.979219e-01   p_joint 5.625000e-05

Joint ci ratio: 8.992824e-01	ci left: 3.232740e-05	ci right 8.620397e-05	k: 18	n:330000
Cons ci ratio: 3.109907e-04	ci left: 9.977693e-01	ci right 9.980825e-01	k: 329317	n:330000
KS ci ratio: 2.771846e+00	ci left: 7.672063e-08	ci right 1.688365e-05	k: 1	n:330000
FIP1L1   330000 perm   109 sec   (3015 perm/sec)   p_kst 3.030303e-06   p_cons 9.979303e-01   p_joint 5.454545e-05

Joint ci ratio: 8.765116e-01	ci left: 3.364515e-05	ci right 8.726585e-05	k: 19	n:340000
Cons ci ratio: 3.055703e-04	ci left: 9.977830e-01	ci right 9.980907e-01	k: 339300	n:340000
KS ci ratio: 2.771846e+00	ci left: 7.446414e-08	ci right 1.638708e-05	k: 1	n:340000
FIP1L1   340000 perm   114 sec   (2980 perm/sec)   p_kst 2.941176e-06   p_cons 9.979412e-01   p_joint 5.588235e-05

Joint ci ratio: 8.765124e-01	ci left: 3.268385e-05	ci right 8.477258e-05	k: 19	n:350000
Cons ci ratio: 3.014624e-04	ci left: 9.977812e-01	ci right 9.980847e-01	k: 349278	n:350000
KS ci ratio: 2.771847e+00	ci left: 7.233659e-08	ci right 1.591888e-05	k: 1	n:350000
FIP1L1   350000 perm   119 sec   (2945 perm/sec)   p_kst 2.857143e-06   p_cons 9.979371e-01   p_joint 5.428571e-05

Joint ci ratio: 8.553880e-01	ci left: 3.393510e-05	ci right 8.579975e-05	k: 20	n:360000
Cons ci ratio: 2.967133e-04	ci left: 9.977910e-01	ci right 9.980898e-01	k: 359260	n:360000
KS ci ratio: 2.771847e+00	ci left: 7.032724e-08	ci right 1.547669e-05	k: 1	n:360000
FIP1L1   360000 perm   124 sec   (2909 perm/sec)   p_kst 2.777778e-06   p_cons 9.979444e-01   p_joint 5.555556e-05

Joint ci ratio: 8.357208e-01	ci left: 3.513366e-05	ci right 8.675743e-05	k: 21	n:370000
Cons ci ratio: 2.937174e-04	ci left: 9.977779e-01	ci right 9.980736e-01	k: 369234	n:370000
KS ci ratio: 2.263201e+00	ci left: 6.546203e-07	ci right 1.952605e-05	k: 2	n:370000
FIP1L1   370000 perm   129 sec   (2876 perm/sec)   p_kst 5.405405e-06   p_cons 9.979297e-01   p_joint 5.675676e-05

Joint ci ratio: 7.839732e-01	ci left: 4.046686e-05	ci right 9.397249e-05	k: 24	n:380000
Cons ci ratio: 2.891386e-04	ci left: 9.977901e-01	ci right 9.980812e-01	k: 379217	n:380000
KS ci ratio: 2.263201e+00	ci left: 6.373935e-07	ci right 1.901221e-05	k: 2	n:380000
FIP1L1   380000 perm   134 sec   (2841 perm/sec)   p_kst 5.263158e-06   p_cons 9.979395e-01   p_joint 6.315789e-05

Joint ci ratio: 7.543773e-01	ci left: 4.354933e-05	ci right 9.768060e-05	k: 26	n:390000
Cons ci ratio: 2.849396e-04	ci left: 9.977990e-01	ci right 9.980858e-01	k: 389199	n:390000
KS ci ratio: 2.263201e+00	ci left: 6.210500e-07	ci right 1.852472e-05	k: 2	n:390000
FIP1L1   390000 perm   139 sec   (2812 perm/sec)   p_kst 5.128205e-06   p_cons 9.979462e-01   p_joint 6.666667e-05

Joint ci ratio: 7.543779e-01	ci left: 4.246058e-05	ci right 9.523862e-05	k: 26	n:400000
Cons ci ratio: 2.807439e-04	ci left: 9.978101e-01	ci right 9.980926e-01	k: 399182	n:400000
KS ci ratio: 2.263202e+00	ci left: 6.055238e-07	ci right 1.806160e-05	k: 2	n:400000
FIP1L1   400000 perm   144 sec   (2780 perm/sec)   p_kst 5.000000e-06   p_cons 9.979550e-01   p_joint 6.500000e-05

Joint ci ratio: 7.543786e-01	ci left: 4.142495e-05	ci right 9.291576e-05	k: 26	n:410000
Cons ci ratio: 2.778819e-04	ci left: 9.978030e-01	ci right 9.980826e-01	k: 409158	n:410000
KS ci ratio: 2.263202e+00	ci left: 5.907549e-07	ci right 1.762108e-05	k: 2	n:410000
FIP1L1   410000 perm   149 sec   (2749 perm/sec)   p_kst 4.878049e-06   p_cons 9.979463e-01   p_joint 6.341463e-05

Joint ci ratio: 8.553917e-01	ci left: 2.908719e-05	ci right 7.354280e-05	k: 20	n:420000
Cons ci ratio: 2.751012e-04	ci left: 9.977962e-01	ci right 9.980730e-01	k: 419134	n:420000
KS ci ratio: 2.263202e+00	ci left: 5.766893e-07	ci right 1.720153e-05	k: 2	n:420000
FIP1L1   420000 perm   154 sec   (2719 perm/sec)   p_kst 4.761905e-06   p_cons 9.979381e-01   p_joint 4.761905e-05

Joint ci ratio: 8.357245e-01	ci left: 3.023125e-05	ci right 7.465190e-05	k: 21	n:430000
Cons ci ratio: 2.705539e-04	ci left: 9.978186e-01	ci right 9.980909e-01	k: 429122	n:430000
KS ci ratio: 2.263203e+00	ci left: 5.632779e-07	ci right 1.680150e-05	k: 2	n:430000
FIP1L1   430000 perm   160 sec   (2689 perm/sec)   p_kst 4.651163e-06   p_cons 9.979581e-01   p_joint 4.883721e-05

Joint ci ratio: 8.553927e-01	ci left: 2.776503e-05	ci right 7.019999e-05	k: 20	n:440000
Cons ci ratio: 2.690303e-04	ci left: 9.977955e-01	ci right 9.980661e-01	k: 439091	n:440000
KS ci ratio: 2.263203e+00	ci left: 5.504761e-07	ci right 1.641965e-05	k: 2	n:440000
FIP1L1   440000 perm   165 sec   (2662 perm/sec)   p_kst 4.545455e-06   p_cons 9.979341e-01   p_joint 4.545455e-05

Joint ci ratio: 8.553932e-01	ci left: 2.714803e-05	ci right 6.864001e-05	k: 20	n:450000
Cons ci ratio: 2.654965e-04	ci left: 9.978054e-01	ci right 9.980725e-01	k: 449074	n:450000
KS ci ratio: 2.263203e+00	ci left: 5.382433e-07	ci right 1.605477e-05	k: 2	n:450000
FIP1L1   450000 perm   171 sec   (2633 perm/sec)   p_kst 4.444444e-06   p_cons 9.979422e-01   p_joint 4.444444e-05

Joint ci ratio: 8.553937e-01	ci left: 2.655785e-05	ci right 6.714785e-05	k: 20	n:460000
Cons ci ratio: 2.629279e-04	ci left: 9.978016e-01	ci right 9.980660e-01	k: 459051	n:460000
KS ci ratio: 2.263203e+00	ci left: 5.265423e-07	ci right 1.570575e-05	k: 2	n:460000
FIP1L1   460000 perm   176 sec   (2608 perm/sec)   p_kst 4.347826e-06   p_cons 9.979370e-01   p_joint 4.347826e-05

Joint ci ratio: 8.173556e-01	ci left: 2.933487e-05	ci right 7.086780e-05	k: 22	n:470000
Cons ci ratio: 2.602966e-04	ci left: 9.978000e-01	ci right 9.980618e-01	k: 469029	n:470000
KS ci ratio: 2.263203e+00	ci left: 5.153393e-07	ci right 1.537159e-05	k: 2	n:470000
FIP1L1   470000 perm   182 sec   (2581 perm/sec)   p_kst 4.255319e-06   p_cons 9.979340e-01   p_joint 4.680851e-05

Joint ci ratio: 1.012123e+00	ci left: 1.594578e-05	ci right 4.893623e-05	k: 14	n:480000
Cons ci ratio: 2.581319e-04	ci left: 9.977922e-01	ci right 9.980518e-01	k: 479004	n:480000
KS ci ratio: 2.771850e+00	ci left: 5.274543e-08	ci right 1.160754e-05	k: 1	n:480000
FIP1L1   480000 perm   188 sec   (2552 perm/sec)   p_kst 2.083333e-06   p_cons 9.979250e-01   p_joint 2.916667e-05

Joint ci ratio: 9.507222e-01	ci left: 1.866416e-05	ci right 5.302599e-05	k: 16	n:490000
Cons ci ratio: 2.541261e-04	ci left: 9.978162e-01	ci right 9.980717e-01	k: 488994	n:490000
KS ci ratio: 2.771850e+00	ci left: 5.166899e-08	ci right 1.137065e-05	k: 1	n:490000
FIP1L1   490000 perm   194 sec   (2526 perm/sec)   p_kst 2.040816e-06   p_cons 9.979469e-01   p_joint 3.265306e-05

Joint ci ratio: 9.507225e-01	ci left: 1.829087e-05	ci right 5.196548e-05	k: 16	n:500000
Cons ci ratio: 2.511360e-04	ci left: 9.978248e-01	ci right 9.980774e-01	k: 498977	n:500000
KS ci ratio: 2.771850e+00	ci left: 5.063561e-08	ci right 1.114324e-05	k: 1	n:500000
FIP1L1   500000 perm   200 sec   (2500 perm/sec)   p_kst 2.000000e-06   p_cons 9.979540e-01   p_joint 3.200000e-05

Joint ci ratio: 9.507229e-01	ci left: 1.793223e-05	ci right 5.094656e-05	k: 16	n:510000
Cons ci ratio: 2.492003e-04	ci left: 9.978170e-01	ci right 9.980675e-01	k: 508952	n:510000
KS ci ratio: 2.771850e+00	ci left: 4.964276e-08	ci right 1.092474e-05	k: 1	n:510000
FIP1L1   510000 perm   206 sec   (2476 perm/sec)   p_kst 1.960784e-06   p_cons 9.979451e-01   p_joint 3.137255e-05

Joint ci ratio: 9.507232e-01	ci left: 1.758737e-05	ci right 4.996682e-05	k: 16	n:520000
Cons ci ratio: 2.470735e-04	ci left: 9.978134e-01	ci right 9.980618e-01	k: 518929	n:520000
KS ci ratio: 2.771851e+00	ci left: 4.868809e-08	ci right 1.071465e-05	k: 1	n:520000
FIP1L1   520000 perm   212 sec   (2447 perm/sec)   p_kst 1.923077e-06   p_cons 9.979404e-01   p_joint 3.076923e-05

Joint ci ratio: 9.507235e-01	ci left: 1.725553e-05	ci right 4.902406e-05	k: 16	n:530000
Cons ci ratio: 2.446625e-04	ci left: 9.978158e-01	ci right 9.980617e-01	k: 528909	n:530000
KS ci ratio: 2.771851e+00	ci left: 4.776945e-08	ci right 1.051249e-05	k: 1	n:530000
FIP1L1   530000 perm   219 sec   (2423 perm/sec)   p_kst 1.886792e-06   p_cons 9.979415e-01   p_joint 3.018868e-05

Joint ci ratio: 9.239366e-01	ci left: 1.833923e-05	ci right 5.040442e-05	k: 17	n:540000
Cons ci ratio: 2.425389e-04	ci left: 9.978143e-01	ci right 9.980581e-01	k: 538887	n:540000
KS ci ratio: 2.771851e+00	ci left: 4.688483e-08	ci right 1.031781e-05	k: 1	n:540000
FIP1L1   540000 perm   225 sec   (2400 perm/sec)   p_kst 1.851852e-06   p_cons 9.979389e-01   p_joint 3.148148e-05

Joint ci ratio: 9.239369e-01	ci left: 1.800578e-05	ci right 4.948799e-05	k: 17	n:550000
Cons ci ratio: 2.397257e-04	ci left: 9.978260e-01	ci right 9.980669e-01	k: 548872	n:550000
KS ci ratio: 2.771851e+00	ci left: 4.603238e-08	ci right 1.013022e-05	k: 1	n:550000
FIP1L1   550000 perm   232 sec   (2375 perm/sec)   p_kst 1.818182e-06   p_cons 9.979491e-01   p_joint 3.090909e-05

Joint ci ratio: 9.239372e-01	ci left: 1.768425e-05	ci right 4.860428e-05	k: 17	n:560000
Cons ci ratio: 2.368988e-04	ci left: 9.978391e-01	ci right 9.980772e-01	k: 558858	n:560000
KS ci ratio: 2.771851e+00	ci left: 4.521037e-08	ci right 9.949323e-06	k: 1	n:560000
FIP1L1   560000 perm   238 sec   (2353 perm/sec)   p_kst 1.785714e-06   p_cons 9.979607e-01   p_joint 3.035714e-05

Joint ci ratio: 1.012125e+00	ci left: 1.342801e-05	ci right 4.120952e-05	k: 14	n:570000
Cons ci ratio: 2.355778e-04	ci left: 9.978264e-01	ci right 9.980632e-01	k: 568830	n:570000
KS ci ratio: 2.771851e+00	ci left: 4.441721e-08	ci right 9.774774e-06	k: 1	n:570000
FIP1L1   570000 perm   245 sec   (2325 perm/sec)   p_kst 1.754386e-06   p_cons 9.979474e-01   p_joint 2.456140e-05

Joint ci ratio: 1.012126e+00	ci left: 1.319649e-05	ci right 4.049902e-05	k: 14	n:580000
Cons ci ratio: 2.332882e-04	ci left: 9.978320e-01	ci right 9.980664e-01	k: 578812	n:580000
KS ci ratio: 2.771851e+00	ci left: 4.365139e-08	ci right 9.606244e-06	k: 1	n:580000
FIP1L1   580000 perm   252 sec   (2300 perm/sec)   p_kst 1.724138e-06   p_cons 9.979517e-01   p_joint 2.413793e-05

Joint ci ratio: 1.012126e+00	ci left: 1.297282e-05	ci right 3.981260e-05	k: 14	n:590000
Cons ci ratio: 2.313506e-04	ci left: 9.978321e-01	ci right 9.980646e-01	k: 588791	n:590000
KS ci ratio: 2.771852e+00	ci left: 4.291154e-08	ci right 9.443427e-06	k: 1	n:590000
FIP1L1   590000 perm   259 sec   (2278 perm/sec)   p_kst 1.694915e-06   p_cons 9.979508e-01   p_joint 2.372881e-05

Joint ci ratio: 1.012126e+00	ci left: 1.275661e-05	ci right 3.914906e-05	k: 14	n:600000
Cons ci ratio: 2.290867e-04	ci left: 9.978391e-01	ci right 9.980694e-01	k: 598774	n:600000
KS ci ratio: 2.771852e+00	ci left: 4.219635e-08	ci right 9.286037e-06	k: 1	n:600000
FIP1L1   600000 perm   266 sec   (2255 perm/sec)   p_kst 1.666667e-06   p_cons 9.979567e-01   p_joint 2.333333e-05

Joint ci ratio: 1.012126e+00	ci left: 1.254748e-05	ci right 3.850728e-05	k: 14	n:610000
Cons ci ratio: 2.272513e-04	ci left: 9.978392e-01	ci right 9.980675e-01	k: 608753	n:610000
KS ci ratio: 2.771852e+00	ci left: 4.150460e-08	ci right 9.133807e-06	k: 1	n:610000
FIP1L1   610000 perm   273 sec   (2235 perm/sec)   p_kst 1.639344e-06   p_cons 9.979557e-01   p_joint 2.295082e-05

Joint ci ratio: 1.012127e+00	ci left: 1.234510e-05	ci right 3.788620e-05	k: 14	n:620000
Cons ci ratio: 2.251922e-04	ci left: 9.978442e-01	ci right 9.980705e-01	k: 618735	n:620000
KS ci ratio: 2.771852e+00	ci left: 4.083517e-08	ci right 8.986488e-06	k: 1	n:620000
FIP1L1   620000 perm   280 sec   (2215 perm/sec)   p_kst 1.612903e-06   p_cons 9.979597e-01   p_joint 2.258065e-05

Joint ci ratio: 9.799868e-01	ci left: 1.332607e-05	ci right 3.926989e-05	k: 15	n:630000
Cons ci ratio: 2.231001e-04	ci left: 9.978507e-01	ci right 9.980749e-01	k: 628718	n:630000
KS ci ratio: 2.263206e+00	ci left: 3.844594e-07	ci right 1.146771e-05	k: 2	n:630000
FIP1L1   630000 perm   287 sec   (2192 perm/sec)   p_kst 3.174603e-06   p_cons 9.979651e-01   p_joint 2.380952e-05

Joint ci ratio: 9.799870e-01	ci left: 1.311785e-05	ci right 3.865630e-05	k: 15	n:640000
Cons ci ratio: 2.218292e-04	ci left: 9.978425e-01	ci right 9.980654e-01	k: 638692	n:640000
KS ci ratio: 2.263206e+00	ci left: 3.784522e-07	ci right 1.128853e-05	k: 2	n:640000
FIP1L1   640000 perm   294 sec   (2174 perm/sec)   p_kst 3.125000e-06   p_cons 9.979562e-01   p_joint 2.343750e-05

Joint ci ratio: 9.507265e-01	ci left: 1.406988e-05	ci right 3.997354e-05	k: 16	n:650000
Cons ci ratio: 2.196634e-04	ci left: 9.978520e-01	ci right 9.980727e-01	k: 648677	n:650000
KS ci ratio: 1.959992e+00	ci left: 9.518043e-07	ci right 1.348805e-05	k: 3	n:650000
FIP1L1   650000 perm   302 sec   (2155 perm/sec)   p_kst 4.615385e-06   p_cons 9.979646e-01   p_joint 2.461538e-05

Joint ci ratio: 9.507267e-01	ci left: 1.385670e-05	ci right 3.936788e-05	k: 16	n:660000
Cons ci ratio: 2.182066e-04	ci left: 9.978488e-01	ci right 9.980680e-01	k: 658654	n:660000
KS ci ratio: 1.959993e+00	ci left: 9.373830e-07	ci right 1.328369e-05	k: 3	n:660000
FIP1L1   660000 perm   309 sec   (2136 perm/sec)   p_kst 4.545455e-06   p_cons 9.979606e-01   p_joint 2.424242e-05

Joint ci ratio: 1.181914e+00	ci left: 7.157319e-06	ci right 2.744812e-05	k: 10	n:670000
Cons ci ratio: 2.165396e-04	ci left: 9.978503e-01	ci right 9.980678e-01	k: 668634	n:670000
KS ci ratio: 1.959993e+00	ci left: 9.233922e-07	ci right 1.308543e-05	k: 3	n:670000
FIP1L1   670000 perm   316 sec   (2120 perm/sec)   p_kst 4.477612e-06   p_cons 9.979612e-01   p_joint 1.492537e-05

Joint ci ratio: 1.181914e+00	ci left: 7.052064e-06	ci right 2.704447e-05	k: 10	n:680000
Cons ci ratio: 2.151430e-04	ci left: 9.978472e-01	ci right 9.980633e-01	k: 678611	n:680000
KS ci ratio: 1.959993e+00	ci left: 9.098129e-07	ci right 1.289299e-05	k: 3	n:680000
FIP1L1   680000 perm   323 sec   (2105 perm/sec)   p_kst 4.411765e-06   p_cons 9.979574e-01   p_joint 1.470588e-05

Joint ci ratio: 1.181914e+00	ci left: 6.949860e-06	ci right 2.665253e-05	k: 10	n:690000
Cons ci ratio: 2.136207e-04	ci left: 9.978471e-01	ci right 9.980617e-01	k: 688590	n:690000
KS ci ratio: 1.959993e+00	ci left: 8.966272e-07	ci right 1.270614e-05	k: 3	n:690000
FIP1L1   690000 perm   330 sec   (2090 perm/sec)   p_kst 4.347826e-06   p_cons 9.979565e-01   p_joint 1.449275e-05

Joint ci ratio: 1.181914e+00	ci left: 6.850576e-06	ci right 2.627178e-05	k: 10	n:700000
Cons ci ratio: 2.122045e-04	ci left: 9.978456e-01	ci right 9.980588e-01	k: 698568	n:700000
KS ci ratio: 1.959993e+00	ci left: 8.838182e-07	ci right 1.252462e-05	k: 3	n:700000
FIP1L1   700000 perm   338 sec   (2071 perm/sec)   p_kst 4.285714e-06   p_cons 9.979543e-01   p_joint 1.428571e-05

Joint ci ratio: 1.239603e+00	ci left: 5.796316e-06	ci right 2.406297e-05	k: 9	n:710000
Cons ci ratio: 2.108884e-04	ci left: 9.978428e-01	ci right 9.980546e-01	k: 708545	n:710000
KS ci ratio: 1.959993e+00	ci left: 8.713700e-07	ci right 1.234822e-05	k: 3	n:710000
FIP1L1   710000 perm   345 sec   (2056 perm/sec)   p_kst 4.225352e-06   p_cons 9.979507e-01   p_joint 1.267606e-05

Joint ci ratio: 1.239603e+00	ci left: 5.715811e-06	ci right 2.372876e-05	k: 9	n:720000
Cons ci ratio: 2.100214e-04	ci left: 9.978314e-01	ci right 9.980423e-01	k: 718516	n:720000
KS ci ratio: 1.959993e+00	ci left: 8.592677e-07	ci right 1.217672e-05	k: 3	n:720000
FIP1L1   720000 perm   353 sec   (2041 perm/sec)   p_kst 4.166667e-06   p_cons 9.979389e-01   p_joint 1.250000e-05

Joint ci ratio: 1.239604e+00	ci left: 5.637512e-06	ci right 2.340371e-05	k: 9	n:730000
Cons ci ratio: 2.080481e-04	ci left: 9.978429e-01	ci right 9.980518e-01	k: 728503	n:730000
KS ci ratio: 1.959993e+00	ci left: 8.474969e-07	ci right 1.200992e-05	k: 3	n:730000
FIP1L1   730000 perm   361 sec   (2021 perm/sec)   p_kst 4.109589e-06   p_cons 9.979493e-01   p_joint 1.232877e-05

Joint ci ratio: 1.239604e+00	ci left: 5.561330e-06	ci right 2.308745e-05	k: 9	n:740000
Cons ci ratio: 2.069427e-04	ci left: 9.978374e-01	ci right 9.980452e-01	k: 738478	n:740000
KS ci ratio: 1.959993e+00	ci left: 8.360442e-07	ci right 1.184762e-05	k: 3	n:740000
FIP1L1   740000 perm   369 sec   (2004 perm/sec)   p_kst 4.054054e-06   p_cons 9.979432e-01   p_joint 1.216216e-05

Joint ci ratio: 1.131597e+00	ci left: 7.321569e-06	ci right 2.624257e-05	k: 11	n:750000
Cons ci ratio: 2.057865e-04	ci left: 9.978334e-01	ci right 9.980401e-01	k: 748454	n:750000
KS ci ratio: 1.959993e+00	ci left: 8.248969e-07	ci right 1.168965e-05	k: 3	n:750000
FIP1L1   750000 perm   377 sec   (1989 perm/sec)   p_kst 4.000000e-06   p_cons 9.979387e-01   p_joint 1.466667e-05

Joint ci ratio: 1.131597e+00	ci left: 7.225232e-06	ci right 2.589727e-05	k: 11	n:760000
Cons ci ratio: 2.039293e-04	ci left: 9.978444e-01	ci right 9.980492e-01	k: 758441	n:760000
KS ci ratio: 1.959994e+00	ci left: 8.140430e-07	ci right 1.153584e-05	k: 3	n:760000
FIP1L1   760000 perm   385 sec   (1974 perm/sec)   p_kst 3.947368e-06   p_cons 9.979487e-01   p_joint 1.447368e-05

Joint ci ratio: 1.087203e+00	ci left: 8.052720e-06	ci right 2.722268e-05	k: 12	n:770000
Cons ci ratio: 2.025027e-04	ci left: 9.978471e-01	ci right 9.980504e-01	k: 768422	n:770000
KS ci ratio: 1.753070e+00	ci left: 1.415411e-06	ci right 1.330071e-05	k: 4	n:770000
FIP1L1   770000 perm   393 sec   (1957 perm/sec)   p_kst 5.194805e-06   p_cons 9.979506e-01   p_joint 1.558442e-05

Joint ci ratio: 1.087203e+00	ci left: 7.949480e-06	ci right 2.687367e-05	k: 12	n:780000
Cons ci ratio: 2.012945e-04	ci left: 9.978458e-01	ci right 9.980479e-01	k: 778400	n:780000
KS ci ratio: 1.753071e+00	ci left: 1.397265e-06	ci right 1.313019e-05	k: 4	n:780000
FIP1L1   780000 perm   402 sec   (1940 perm/sec)   p_kst 5.128205e-06   p_cons 9.979487e-01   p_joint 1.538462e-05

Joint ci ratio: 1.087203e+00	ci left: 7.848853e-06	ci right 2.653350e-05	k: 12	n:790000
Cons ci ratio: 2.001075e-04	ci left: 9.978445e-01	ci right 9.980455e-01	k: 788378	n:790000
KS ci ratio: 1.753071e+00	ci left: 1.379578e-06	ci right 1.296399e-05	k: 4	n:790000
FIP1L1   790000 perm   410 sec   (1926 perm/sec)   p_kst 5.063291e-06   p_cons 9.979468e-01   p_joint 1.518987e-05

Joint ci ratio: 1.087203e+00	ci left: 7.750742e-06	ci right 2.620183e-05	k: 12	n:800000
Cons ci ratio: 1.985166e-04	ci left: 9.978523e-01	ci right 9.980516e-01	k: 798363	n:800000
KS ci ratio: 1.753071e+00	ci left: 1.362333e-06	ci right 1.280194e-05	k: 4	n:800000
FIP1L1   800000 perm   419 sec   (1909 perm/sec)   p_kst 5.000000e-06   p_cons 9.979537e-01   p_joint 1.500000e-05

Joint ci ratio: 1.087203e+00	ci left: 7.655054e-06	ci right 2.587836e-05	k: 12	n:810000
Cons ci ratio: 1.970205e-04	ci left: 9.978586e-01	ci right 9.980564e-01	k: 808347	n:810000
KS ci ratio: 1.753071e+00	ci left: 1.345514e-06	ci right 1.264389e-05	k: 4	n:810000
FIP1L1   810000 perm   428 sec   (1893 perm/sec)   p_kst 4.938272e-06   p_cons 9.979593e-01   p_joint 1.481481e-05

Joint ci ratio: 1.087203e+00	ci left: 7.561699e-06	ci right 2.556277e-05	k: 12	n:820000
Cons ci ratio: 1.958494e-04	ci left: 9.978585e-01	ci right 9.980551e-01	k: 818326	n:820000
KS ci ratio: 1.753071e+00	ci left: 1.329106e-06	ci right 1.248969e-05	k: 4	n:820000
FIP1L1   820000 perm   437 sec   (1877 perm/sec)   p_kst 4.878049e-06   p_cons 9.979585e-01   p_joint 1.463415e-05

Joint ci ratio: 1.181916e+00	ci left: 5.777591e-06	ci right 2.215694e-05	k: 10	n:830000
Cons ci ratio: 1.945264e-04	ci left: 9.978620e-01	ci right 9.980573e-01	k: 828308	n:830000
KS ci ratio: 1.753071e+00	ci left: 1.313092e-06	ci right 1.233922e-05	k: 4	n:830000
FIP1L1   830000 perm   446 sec   (1863 perm/sec)   p_kst 4.819277e-06   p_cons 9.979614e-01   p_joint 1.204819e-05

Joint ci ratio: 1.131598e+00	ci left: 6.537113e-06	ci right 2.343088e-05	k: 11	n:840000
Cons ci ratio: 1.935121e-04	ci left: 9.978595e-01	ci right 9.980537e-01	k: 838285	n:840000
KS ci ratio: 1.753071e+00	ci left: 1.297460e-06	ci right 1.219232e-05	k: 4	n:840000
FIP1L1   840000 perm   454 sec   (1851 perm/sec)   p_kst 4.761905e-06   p_cons 9.979583e-01   p_joint 1.309524e-05

Joint ci ratio: 1.131598e+00	ci left: 6.460206e-06	ci right 2.315522e-05	k: 11	n:850000
Cons ci ratio: 1.920689e-04	ci left: 9.978666e-01	ci right 9.980594e-01	k: 848270	n:850000
KS ci ratio: 1.753071e+00	ci left: 1.282196e-06	ci right 1.204888e-05	k: 4	n:850000
FIP1L1   850000 perm   463 sec   (1838 perm/sec)   p_kst 4.705882e-06   p_cons 9.979647e-01   p_joint 1.294118e-05

Joint ci ratio: 1.131598e+00	ci left: 6.385087e-06	ci right 2.288598e-05	k: 11	n:860000
Cons ci ratio: 1.915835e-04	ci left: 9.978533e-01	ci right 9.980456e-01	k: 858238	n:860000
KS ci ratio: 1.753071e+00	ci left: 1.267287e-06	ci right 1.190878e-05	k: 4	n:860000
FIP1L1   860000 perm   472 sec   (1823 perm/sec)   p_kst 4.651163e-06   p_cons 9.979512e-01   p_joint 1.279070e-05

Joint ci ratio: 1.131598e+00	ci left: 6.311695e-06	ci right 2.262292e-05	k: 11	n:870000
Cons ci ratio: 1.902919e-04	ci left: 9.978580e-01	ci right 9.980490e-01	k: 868221	n:870000
KS ci ratio: 1.753071e+00	ci left: 1.252720e-06	ci right 1.177190e-05	k: 4	n:870000
FIP1L1   870000 perm   481 sec   (1807 perm/sec)   p_kst 4.597701e-06   p_cons 9.979552e-01   p_joint 1.264368e-05

Joint ci ratio: 1.131598e+00	ci left: 6.239971e-06	ci right 2.236584e-05	k: 11	n:880000
Cons ci ratio: 1.894991e-04	ci left: 9.978521e-01	ci right 9.980423e-01	k: 878195	n:880000
KS ci ratio: 1.753071e+00	ci left: 1.238485e-06	ci right 1.163813e-05	k: 4	n:880000
FIP1L1   880000 perm   490 sec   (1794 perm/sec)   p_kst 4.545455e-06   p_cons 9.979489e-01   p_joint 1.250000e-05

Joint ci ratio: 1.131598e+00	ci left: 6.169859e-06	ci right 2.211454e-05	k: 11	n:890000
Cons ci ratio: 1.882493e-04	ci left: 9.978567e-01	ci right 9.980457e-01	k: 888178	n:890000
KS ci ratio: 1.753071e+00	ci left: 1.224569e-06	ci right 1.150736e-05	k: 4	n:890000
FIP1L1   890000 perm   500 sec   (1782 perm/sec)   p_kst 4.494382e-06   p_cons 9.979528e-01   p_joint 1.235955e-05

Joint ci ratio: 1.131598e+00	ci left: 6.101305e-06	ci right 2.186883e-05	k: 11	n:900000
Cons ci ratio: 1.868704e-04	ci left: 9.978646e-01	ci right 9.980522e-01	k: 898164	n:900000
KS ci ratio: 1.753071e+00	ci left: 1.210963e-06	ci right 1.137950e-05	k: 4	n:900000
FIP1L1   900000 perm   509 sec   (1770 perm/sec)   p_kst 4.444444e-06   p_cons 9.979600e-01   p_joint 1.222222e-05

Joint ci ratio: 1.087204e+00	ci left: 6.813837e-06	ci right 2.303460e-05	k: 12	n:910000
Cons ci ratio: 1.861208e-04	ci left: 9.978588e-01	ci right 9.980457e-01	k: 908138	n:910000
KS ci ratio: 1.600327e+00	ci left: 1.784053e-06	ci right 1.282230e-05	k: 5	n:910000
FIP1L1   910000 perm   518 sec   (1758 perm/sec)   p_kst 5.494505e-06   p_cons 9.979538e-01   p_joint 1.318681e-05

Joint ci ratio: 1.047656e+00	ci left: 7.523882e-06	ci right 2.416335e-05	k: 13	n:920000
Cons ci ratio: 1.850833e-04	ci left: 9.978599e-01	ci right 9.980456e-01	k: 918118	n:920000
KS ci ratio: 1.600327e+00	ci left: 1.764661e-06	ci right 1.268292e-05	k: 5	n:920000
FIP1L1   920000 perm   527 sec   (1746 perm/sec)   p_kst 5.434783e-06   p_cons 9.979543e-01   p_joint 1.413043e-05

Joint ci ratio: 1.047656e+00	ci left: 7.442980e-06	ci right 2.390353e-05	k: 13	n:930000
Cons ci ratio: 1.843534e-04	ci left: 9.978543e-01	ci right 9.980393e-01	k: 928092	n:930000
KS ci ratio: 1.600327e+00	ci left: 1.745687e-06	ci right 1.254655e-05	k: 5	n:930000
FIP1L1   930000 perm   536 sec   (1734 perm/sec)   p_kst 5.376344e-06   p_cons 9.979484e-01   p_joint 1.397849e-05

Joint ci ratio: 1.047656e+00	ci left: 7.363799e-06	ci right 2.364924e-05	k: 13	n:940000
Cons ci ratio: 1.832022e-04	ci left: 9.978587e-01	ci right 9.980425e-01	k: 938075	n:940000
KS ci ratio: 1.600327e+00	ci left: 1.727115e-06	ci right 1.241308e-05	k: 5	n:940000
FIP1L1   940000 perm   546 sec   (1720 perm/sec)   p_kst 5.319149e-06   p_cons 9.979521e-01   p_joint 1.382979e-05

Joint ci ratio: 1.047656e+00	ci left: 7.286285e-06	ci right 2.340030e-05	k: 13	n:950000
Cons ci ratio: 1.819307e-04	ci left: 9.978661e-01	ci right 9.980487e-01	k: 948061	n:950000
KS ci ratio: 1.600327e+00	ci left: 1.708935e-06	ci right 1.228241e-05	k: 5	n:950000
FIP1L1   950000 perm   556 sec   (1710 perm/sec)   p_kst 5.263158e-06   p_cons 9.979589e-01   p_joint 1.368421e-05

Joint ci ratio: 1.047656e+00	ci left: 7.210386e-06	ci right 2.315655e-05	k: 13	n:960000
Cons ci ratio: 1.811924e-04	ci left: 9.978617e-01	ci right 9.980436e-01	k: 958036	n:960000
KS ci ratio: 1.600327e+00	ci left: 1.691134e-06	ci right 1.215447e-05	k: 5	n:960000
FIP1L1   960000 perm   566 sec   (1697 perm/sec)   p_kst 5.208333e-06   p_cons 9.979542e-01   p_joint 1.354167e-05

Joint ci ratio: 1.047656e+00	ci left: 7.136052e-06	ci right 2.291782e-05	k: 13	n:970000
Cons ci ratio: 1.799159e-04	ci left: 9.978701e-01	ci right 9.980506e-01	k: 968023	n:970000
KS ci ratio: 1.600328e+00	ci left: 1.673699e-06	ci right 1.202917e-05	k: 5	n:970000
FIP1L1   970000 perm   576 sec   (1685 perm/sec)   p_kst 5.154639e-06   p_cons 9.979619e-01   p_joint 1.340206e-05

Joint ci ratio: 1.047656e+00	ci left: 7.063235e-06	ci right 2.268397e-05	k: 13	n:980000
Cons ci ratio: 1.791126e-04	ci left: 9.978678e-01	ci right 9.980476e-01	k: 978000	n:980000
KS ci ratio: 1.600328e+00	ci left: 1.656621e-06	ci right 1.190642e-05	k: 5	n:980000
FIP1L1   980000 perm   585 sec   (1674 perm/sec)   p_kst 5.102041e-06   p_cons 9.979592e-01   p_joint 1.326531e-05

Joint ci ratio: 1.047656e+00	ci left: 6.991889e-06	ci right 2.245484e-05	k: 13	n:990000
Cons ci ratio: 1.783197e-04	ci left: 9.978656e-01	ci right 9.980446e-01	k: 987977	n:990000
KS ci ratio: 1.600328e+00	ci left: 1.639887e-06	ci right 1.178615e-05	k: 5	n:990000
FIP1L1   990000 perm   595 sec   (1664 perm/sec)   p_kst 5.050505e-06   p_cons 9.979566e-01   p_joint 1.313131e-05

Joint ci ratio: 1.047656e+00	ci left: 6.921970e-06	ci right 2.223029e-05	k: 13	n:1000000
Cons ci ratio: 1.776673e-04	ci left: 9.978604e-01	ci right 9.980387e-01	k: 997951	n:1000000
KS ci ratio: 1.600328e+00	ci left: 1.623488e-06	ci right 1.166829e-05	k: 5	n:1000000
FIP1L1   1000000 perm   605 sec   (1654 perm/sec)   p_kst 5.000000e-06   p_cons 9.979510e-01   p_joint 1.300000e-05

Joint ci ratio: 1.047656e+00	ci left: 6.853436e-06	ci right 2.201019e-05	k: 13	n:1010000
Cons ci ratio: 1.769780e-04	ci left: 9.978563e-01	ci right 9.980339e-01	k: 1007926	n:1010000
KS ci ratio: 1.600328e+00	ci left: 1.607414e-06	ci right 1.155277e-05	k: 5	n:1010000
FIP1L1   1010000 perm   615 sec   (1642 perm/sec)   p_kst 4.950495e-06   p_cons 9.979465e-01   p_joint 1.287129e-05

Joint ci ratio: 1.047656e+00	ci left: 6.786245e-06	ci right 2.179441e-05	k: 13	n:1020000
Cons ci ratio: 1.767998e-04	ci left: 9.978403e-01	ci right 9.980177e-01	k: 1017889	n:1020000
KS ci ratio: 1.600328e+00	ci left: 1.591655e-06	ci right 1.143950e-05	k: 5	n:1020000
FIP1L1   1020000 perm   625 sec   (1632 perm/sec)   p_kst 4.901961e-06   p_cons 9.979304e-01   p_joint 1.274510e-05

Joint ci ratio: 1.047656e+00	ci left: 6.720359e-06	ci right 2.158281e-05	k: 13	n:1030000
Cons ci ratio: 1.760756e-04	ci left: 9.978374e-01	ci right 9.980141e-01	k: 1027865	n:1030000
KS ci ratio: 1.600328e+00	ci left: 1.576202e-06	ci right 1.132844e-05	k: 5	n:1030000
FIP1L1   1030000 perm   637 sec   (1617 perm/sec)   p_kst 4.854369e-06   p_cons 9.979272e-01   p_joint 1.262136e-05

Joint ci ratio: 1.047657e+00	ci left: 6.655740e-06	ci right 2.137529e-05	k: 13	n:1040000
Cons ci ratio: 1.754005e-04	ci left: 9.978337e-01	ci right 9.980097e-01	k: 1037840	n:1040000
KS ci ratio: 1.600328e+00	ci left: 1.561046e-06	ci right 1.121951e-05	k: 5	n:1040000
FIP1L1   1040000 perm   647 sec   (1607 perm/sec)   p_kst 4.807692e-06   p_cons 9.979231e-01   p_joint 1.250000e-05

Joint ci ratio: 1.047657e+00	ci left: 6.592352e-06	ci right 2.117171e-05	k: 13	n:1050000
Cons ci ratio: 1.744117e-04	ci left: 9.978378e-01	ci right 9.980128e-01	k: 1047823	n:1050000
KS ci ratio: 1.600328e+00	ci left: 1.546179e-06	ci right 1.111266e-05	k: 5	n:1050000
FIP1L1   1050000 perm   657 sec   (1598 perm/sec)   p_kst 4.761905e-06   p_cons 9.979267e-01   p_joint 1.238095e-05

Joint ci ratio: 1.047657e+00	ci left: 6.530160e-06	ci right 2.097198e-05	k: 13	n:1060000
Cons ci ratio: 1.737554e-04	ci left: 9.978341e-01	ci right 9.980084e-01	k: 1057798	n:1060000
KS ci ratio: 1.600328e+00	ci left: 1.531593e-06	ci right 1.100783e-05	k: 5	n:1060000
FIP1L1   1060000 perm   667 sec   (1588 perm/sec)   p_kst 4.716981e-06   p_cons 9.979226e-01   p_joint 1.226415e-05

Joint ci ratio: 1.047657e+00	ci left: 6.469130e-06	ci right 2.077598e-05	k: 13	n:1070000
Cons ci ratio: 1.729500e-04	ci left: 9.978343e-01	ci right 9.980078e-01	k: 1067777	n:1070000
KS ci ratio: 1.600328e+00	ci left: 1.517279e-06	ci right 1.090495e-05	k: 5	n:1070000
FIP1L1   1070000 perm   679 sec   (1576 perm/sec)   p_kst 4.672897e-06   p_cons 9.979224e-01   p_joint 1.214953e-05

Joint ci ratio: 1.047657e+00	ci left: 6.409230e-06	ci right 2.058361e-05	k: 13	n:1080000
Cons ci ratio: 1.719635e-04	ci left: 9.978393e-01	ci right 9.980118e-01	k: 1077761	n:1080000
KS ci ratio: 1.600328e+00	ci left: 1.503230e-06	ci right 1.080398e-05	k: 5	n:1080000
FIP1L1   1080000 perm   689 sec   (1567 perm/sec)   p_kst 4.629630e-06   p_cons 9.979269e-01   p_joint 1.203704e-05

Joint ci ratio: 1.047657e+00	ci left: 6.350430e-06	ci right 2.039477e-05	k: 13	n:1090000
Cons ci ratio: 1.714859e-04	ci left: 9.978319e-01	ci right 9.980039e-01	k: 1087732	n:1090000
KS ci ratio: 1.600328e+00	ci left: 1.489439e-06	ci right 1.070486e-05	k: 5	n:1090000
FIP1L1   1090000 perm   700 sec   (1557 perm/sec)   p_kst 4.587156e-06   p_cons 9.979193e-01   p_joint 1.192661e-05

Joint ci ratio: 1.047657e+00	ci left: 6.292699e-06	ci right 2.020937e-05	k: 13	n:1100000
Cons ci ratio: 1.707488e-04	ci left: 9.978312e-01	ci right 9.980025e-01	k: 1097710	n:1100000
KS ci ratio: 1.600328e+00	ci left: 1.475898e-06	ci right 1.060754e-05	k: 5	n:1100000
FIP1L1   1100000 perm   711 sec   (1548 perm/sec)   p_kst 4.545455e-06   p_cons 9.979182e-01   p_joint 1.181818e-05

Joint ci ratio: 1.047657e+00	ci left: 6.236008e-06	ci right 2.002730e-05	k: 13	n:1110000
Cons ci ratio: 1.699474e-04	ci left: 9.978324e-01	ci right 9.980028e-01	k: 1107690	n:1110000
KS ci ratio: 1.600328e+00	ci left: 1.462602e-06	ci right 1.051198e-05	k: 5	n:1110000
FIP1L1   1110000 perm   721 sec   (1539 perm/sec)   p_kst 4.504505e-06   p_cons 9.979189e-01   p_joint 1.171171e-05

Joint ci ratio: 1.047657e+00	ci left: 6.180329e-06	ci right 1.984849e-05	k: 13	n:1120000
Cons ci ratio: 1.693390e-04	ci left: 9.978290e-01	ci right 9.979988e-01	k: 1117665	n:1120000
KS ci ratio: 1.600328e+00	ci left: 1.449543e-06	ci right 1.041812e-05	k: 5	n:1120000
FIP1L1   1120000 perm   732 sec   (1529 perm/sec)   p_kst 4.464286e-06   p_cons 9.979152e-01   p_joint 1.160714e-05

Joint ci ratio: 1.047657e+00	ci left: 6.125635e-06	ci right 1.967284e-05	k: 13	n:1130000
Cons ci ratio: 1.688438e-04	ci left: 9.978229e-01	ci right 9.979922e-01	k: 1127637	n:1130000
KS ci ratio: 1.600328e+00	ci left: 1.436715e-06	ci right 1.032593e-05	k: 5	n:1130000
FIP1L1   1130000 perm   743 sec   (1520 perm/sec)   p_kst 4.424779e-06   p_cons 9.979088e-01   p_joint 1.150442e-05

Joint ci ratio: 1.239607e+00	ci left: 3.609983e-06	ci right 1.498662e-05	k: 9	n:1140000
Cons ci ratio: 1.680338e-04	ci left: 9.978250e-01	ci right 9.979935e-01	k: 1137618	n:1140000
KS ci ratio: 2.771855e+00	ci left: 2.220860e-08	ci right 4.887397e-06	k: 1	n:1140000
FIP1L1   1140000 perm   755 sec   (1510 perm/sec)   p_kst 8.771930e-07   p_cons 9.979105e-01   p_joint 7.894737e-06

Joint ci ratio: 1.239607e+00	ci left: 3.578591e-06	ci right 1.485630e-05	k: 9	n:1150000
Cons ci ratio: 1.673050e-04	ci left: 9.978253e-01	ci right 9.979931e-01	k: 1147597	n:1150000
KS ci ratio: 2.771855e+00	ci left: 2.201548e-08	ci right 4.844898e-06	k: 1	n:1150000
FIP1L1   1150000 perm   766 sec   (1502 perm/sec)   p_kst 8.695652e-07   p_cons 9.979104e-01   p_joint 7.826087e-06

Joint ci ratio: 1.239607e+00	ci left: 3.547741e-06	ci right 1.472823e-05	k: 9	n:1160000
Cons ci ratio: 1.664823e-04	ci left: 9.978282e-01	ci right 9.979952e-01	k: 1157579	n:1160000
KS ci ratio: 2.771855e+00	ci left: 2.182570e-08	ci right 4.803131e-06	k: 1	n:1160000
FIP1L1   1160000 perm   777 sec   (1494 perm/sec)   p_kst 8.620690e-07   p_cons 9.979129e-01   p_joint 7.758621e-06

Joint ci ratio: 1.239607e+00	ci left: 3.517419e-06	ci right 1.460235e-05	k: 9	n:1170000
Cons ci ratio: 1.656374e-04	ci left: 9.978319e-01	ci right 9.979981e-01	k: 1167562	n:1170000
KS ci ratio: 2.771855e+00	ci left: 2.163915e-08	ci right 4.762079e-06	k: 1	n:1170000
FIP1L1   1170000 perm   787 sec   (1486 perm/sec)   p_kst 8.547009e-07   p_cons 9.979162e-01   p_joint 7.692308e-06

Joint ci ratio: 1.239607e+00	ci left: 3.487610e-06	ci right 1.447860e-05	k: 9	n:1180000
Cons ci ratio: 1.648048e-04	ci left: 9.978356e-01	ci right 9.980009e-01	k: 1177545	n:1180000
KS ci ratio: 2.771855e+00	ci left: 2.145577e-08	ci right 4.721723e-06	k: 1	n:1180000
FIP1L1   1180000 perm   799 sec   (1477 perm/sec)   p_kst 8.474576e-07   p_cons 9.979195e-01   p_joint 7.627119e-06

Joint ci ratio: 1.181919e+00	ci left: 4.029746e-06	ci right 1.545403e-05	k: 10	n:1190000
Cons ci ratio: 1.639842e-04	ci left: 9.978392e-01	ci right 9.980037e-01	k: 1187528	n:1190000
KS ci ratio: 2.771855e+00	ci left: 2.127547e-08	ci right 4.682044e-06	k: 1	n:1190000
FIP1L1   1190000 perm   810 sec   (1469 perm/sec)   p_kst 8.403361e-07   p_cons 9.979227e-01   p_joint 8.403361e-06

Joint ci ratio: 1.181919e+00	ci left: 3.996164e-06	ci right 1.532524e-05	k: 10	n:1200000
Cons ci ratio: 1.630768e-04	ci left: 9.978454e-01	ci right 9.980089e-01	k: 1197514	n:1200000
KS ci ratio: 2.771855e+00	ci left: 2.109817e-08	ci right 4.643027e-06	k: 1	n:1200000
FIP1L1   1200000 perm   822 sec   (1460 perm/sec)   p_kst 8.333333e-07   p_cons 9.979283e-01   p_joint 8.333333e-06

Joint ci ratio: 1.181919e+00	ci left: 3.963138e-06	ci right 1.519859e-05	k: 10	n:1210000
Cons ci ratio: 1.625078e-04	ci left: 9.978429e-01	ci right 9.980059e-01	k: 1207490	n:1210000
KS ci ratio: 2.771855e+00	ci left: 2.092381e-08	ci right 4.604655e-06	k: 1	n:1210000
FIP1L1   1210000 perm   833 sec   (1452 perm/sec)   p_kst 8.264463e-07   p_cons 9.979256e-01   p_joint 8.264463e-06

Joint ci ratio: 1.181919e+00	ci left: 3.930653e-06	ci right 1.507401e-05	k: 10	n:1220000
Cons ci ratio: 1.617843e-04	ci left: 9.978447e-01	ci right 9.980070e-01	k: 1217471	n:1220000
KS ci ratio: 2.771855e+00	ci left: 2.075230e-08	ci right 4.566912e-06	k: 1	n:1220000
FIP1L1   1220000 perm   845 sec   (1444 perm/sec)   p_kst 8.196721e-07   p_cons 9.979270e-01   p_joint 8.196721e-06

Joint ci ratio: 1.181919e+00	ci left: 3.898697e-06	ci right 1.495146e-05	k: 10	n:1230000
Cons ci ratio: 1.612602e-04	ci left: 9.978415e-01	ci right 9.980033e-01	k: 1227446	n:1230000
KS ci ratio: 2.771855e+00	ci left: 2.058358e-08	ci right 4.529783e-06	k: 1	n:1230000
FIP1L1   1230000 perm   857 sec   (1435 perm/sec)   p_kst 8.130081e-07   p_cons 9.979236e-01   p_joint 8.130081e-06

Joint ci ratio: 1.131601e+00	ci left: 4.428363e-06	ci right 1.587256e-05	k: 11	n:1240000
Cons ci ratio: 1.609590e-04	ci left: 9.978326e-01	ci right 9.979940e-01	k: 1237414	n:1240000
KS ci ratio: 2.771855e+00	ci left: 2.041759e-08	ci right 4.493253e-06	k: 1	n:1240000
FIP1L1   1240000 perm   869 sec   (1426 perm/sec)   p_kst 8.064516e-07   p_cons 9.979145e-01   p_joint 8.870968e-06

Joint ci ratio: 1.131601e+00	ci left: 4.392936e-06	ci right 1.574558e-05	k: 11	n:1250000
Cons ci ratio: 1.603489e-04	ci left: 9.978320e-01	ci right 9.979928e-01	k: 1247392	n:1250000
KS ci ratio: 2.771855e+00	ci left: 2.025425e-08	ci right 4.457307e-06	k: 1	n:1250000
FIP1L1   1250000 perm   881 sec   (1419 perm/sec)   p_kst 8.000000e-07   p_cons 9.979136e-01   p_joint 8.800000e-06

Joint ci ratio: 1.131601e+00	ci left: 4.358072e-06	ci right 1.562061e-05	k: 11	n:1260000
Cons ci ratio: 1.595630e-04	ci left: 9.978363e-01	ci right 9.979963e-01	k: 1257376	n:1260000
KS ci ratio: 2.771855e+00	ci left: 2.009350e-08	ci right 4.421931e-06	k: 1	n:1260000
FIP1L1   1260000 perm   894 sec   (1409 perm/sec)   p_kst 7.936508e-07   p_cons 9.979175e-01   p_joint 8.730159e-06

Joint ci ratio: 1.239607e+00	ci left: 3.240456e-06	ci right 1.345256e-05	k: 9	n:1270000
Cons ci ratio: 1.588784e-04	ci left: 9.978381e-01	ci right 9.979974e-01	k: 1267357	n:1270000
KS ci ratio: 2.771855e+00	ci left: 1.993528e-08	ci right 4.387113e-06	k: 1	n:1270000
FIP1L1   1270000 perm   907 sec   (1400 perm/sec)   p_kst 7.874016e-07   p_cons 9.979189e-01   p_joint 7.086614e-06

Joint ci ratio: 1.239608e+00	ci left: 3.215140e-06	ci right 1.334746e-05	k: 9	n:1280000
Cons ci ratio: 1.582917e-04	ci left: 9.978375e-01	ci right 9.979962e-01	k: 1277335	n:1280000
KS ci ratio: 2.771855e+00	ci left: 1.977954e-08	ci right 4.352839e-06	k: 1	n:1280000
FIP1L1   1280000 perm   919 sec   (1392 perm/sec)   p_kst 7.812500e-07   p_cons 9.979180e-01   p_joint 7.031250e-06

Joint ci ratio: 1.239608e+00	ci left: 3.190217e-06	ci right 1.324399e-05	k: 9	n:1290000
Cons ci ratio: 1.577702e-04	ci left: 9.978353e-01	ci right 9.979935e-01	k: 1287311	n:1290000
KS ci ratio: 2.771855e+00	ci left: 1.962621e-08	ci right 4.319096e-06	k: 1	n:1290000
FIP1L1   1290000 perm   932 sec   (1385 perm/sec)   p_kst 7.751938e-07   p_cons 9.979155e-01   p_joint 6.976744e-06

Joint ci ratio: 1.239608e+00	ci left: 3.165676e-06	ci right 1.314212e-05	k: 9	n:1300000
Cons ci ratio: 1.571665e-04	ci left: 9.978355e-01	ci right 9.979931e-01	k: 1297290	n:1300000
KS ci ratio: 2.771855e+00	ci left: 1.947524e-08	ci right 4.285872e-06	k: 1	n:1300000
FIP1L1   1300000 perm   944 sec   (1377 perm/sec)   p_kst 7.692308e-07   p_cons 9.979154e-01   p_joint 6.923077e-06

Joint ci ratio: 1.239608e+00	ci left: 3.141511e-06	ci right 1.304179e-05	k: 9	n:1310000
Cons ci ratio: 1.563973e-04	ci left: 9.978403e-01	ci right 9.979971e-01	k: 1307275	n:1310000
KS ci ratio: 2.771855e+00	ci left: 1.932657e-08	ci right 4.253155e-06	k: 1	n:1310000
FIP1L1   1310000 perm   956 sec   (1370 perm/sec)   p_kst 7.633588e-07   p_cons 9.979198e-01   p_joint 6.870229e-06

Joint ci ratio: 1.239608e+00	ci left: 3.117711e-06	ci right 1.294299e-05	k: 9	n:1320000
Cons ci ratio: 1.557523e-04	ci left: 9.978420e-01	ci right 9.979982e-01	k: 1317256	n:1320000
KS ci ratio: 2.771855e+00	ci left: 1.918016e-08	ci right 4.220935e-06	k: 1	n:1320000
FIP1L1   1320000 perm   969 sec   (1363 perm/sec)   p_kst 7.575758e-07   p_cons 9.979212e-01   p_joint 6.818182e-06

Joint ci ratio: 1.239608e+00	ci left: 3.094270e-06	ci right 1.284568e-05	k: 9	n:1330000
Cons ci ratio: 1.552276e-04	ci left: 9.978406e-01	ci right 9.979963e-01	k: 1327233	n:1330000
KS ci ratio: 2.771855e+00	ci left: 1.903595e-08	ci right 4.189198e-06	k: 1	n:1330000
FIP1L1   1330000 perm   982 sec   (1354 perm/sec)   p_kst 7.518797e-07   p_cons 9.979195e-01   p_joint 6.766917e-06

Joint ci ratio: 1.239608e+00	ci left: 3.071178e-06	ci right 1.274981e-05	k: 9	n:1340000
Cons ci ratio: 1.546804e-04	ci left: 9.978400e-01	ci right 9.979951e-01	k: 1337211	n:1340000
KS ci ratio: 2.771855e+00	ci left: 1.889389e-08	ci right 4.157936e-06	k: 1	n:1340000
FIP1L1   1340000 perm   995 sec   (1347 perm/sec)   p_kst 7.462687e-07   p_cons 9.979187e-01   p_joint 6.716418e-06

Joint ci ratio: 1.239608e+00	ci left: 3.048429e-06	ci right 1.265537e-05	k: 9	n:1350000
Cons ci ratio: 1.542212e-04	ci left: 9.978372e-01	ci right 9.979918e-01	k: 1347186	n:1350000
KS ci ratio: 2.771856e+00	ci left: 1.875393e-08	ci right 4.127136e-06	k: 1	n:1350000
FIP1L1   1350000 perm   1011 sec   (1335 perm/sec)   p_kst 7.407407e-07   p_cons 9.979156e-01   p_joint 6.666667e-06

Joint ci ratio: 1.239608e+00	ci left: 3.026014e-06	ci right 1.256232e-05	k: 9	n:1360000
Cons ci ratio: 1.538471e-04	ci left: 9.978321e-01	ci right 9.979863e-01	k: 1357158	n:1360000
KS ci ratio: 2.771856e+00	ci left: 1.861604e-08	ci right 4.096790e-06	k: 1	n:1360000
FIP1L1   1360000 perm   1024 sec   (1328 perm/sec)   p_kst 7.352941e-07   p_cons 9.979103e-01   p_joint 6.617647e-06

Joint ci ratio: 1.239608e+00	ci left: 3.003926e-06	ci right 1.247062e-05	k: 9	n:1370000
Cons ci ratio: 1.532871e-04	ci left: 9.978323e-01	ci right 9.979860e-01	k: 1367137	n:1370000
KS ci ratio: 2.771856e+00	ci left: 1.848015e-08	ci right 4.066886e-06	k: 1	n:1370000
FIP1L1   1370000 perm   1038 sec   (1320 perm/sec)   p_kst 7.299270e-07   p_cons 9.979102e-01   p_joint 6.569343e-06

Joint ci ratio: 1.239608e+00	ci left: 2.982159e-06	ci right 1.238026e-05	k: 9	n:1380000
Cons ci ratio: 1.527863e-04	ci left: 9.978311e-01	ci right 9.979842e-01	k: 1377114	n:1380000
KS ci ratio: 2.771856e+00	ci left: 1.834624e-08	ci right 4.037416e-06	k: 1	n:1380000
FIP1L1   1380000 perm   1051 sec   (1313 perm/sec)   p_kst 7.246377e-07   p_cons 9.979087e-01   p_joint 6.521739e-06

Joint ci ratio: 1.239608e+00	ci left: 2.960704e-06	ci right 1.229119e-05	k: 9	n:1390000
Cons ci ratio: 1.522378e-04	ci left: 9.978313e-01	ci right 9.979839e-01	k: 1387093	n:1390000
KS ci ratio: 2.771856e+00	ci left: 1.821425e-08	ci right 4.008370e-06	k: 1	n:1390000
FIP1L1   1390000 perm   1064 sec   (1306 perm/sec)   p_kst 7.194245e-07   p_cons 9.979086e-01   p_joint 6.474820e-06

Joint ci ratio: 1.239608e+00	ci left: 2.939556e-06	ci right 1.220340e-05	k: 9	n:1400000
Cons ci ratio: 1.516692e-04	ci left: 9.978322e-01	ci right 9.979843e-01	k: 1397073	n:1400000
KS ci ratio: 2.771856e+00	ci left: 1.808415e-08	ci right 3.979739e-06	k: 1	n:1400000
FIP1L1   1400000 perm   1077 sec   (1300 perm/sec)   p_kst 7.142857e-07   p_cons 9.979093e-01   p_joint 6.428571e-06

Joint ci ratio: 1.239608e+00	ci left: 2.918708e-06	ci right 1.211685e-05	k: 9	n:1410000
Cons ci ratio: 1.512610e-04	ci left: 9.978288e-01	ci right 9.979805e-01	k: 1407047	n:1410000
KS ci ratio: 2.771856e+00	ci left: 1.795589e-08	ci right 3.951514e-06	k: 1	n:1410000
FIP1L1   1410000 perm   1090 sec   (1294 perm/sec)   p_kst 7.092199e-07   p_cons 9.979057e-01   p_joint 6.382979e-06

Joint ci ratio: 1.239608e+00	ci left: 2.898154e-06	ci right 1.203152e-05	k: 9	n:1420000
Cons ci ratio: 1.507033e-04	ci left: 9.978298e-01	ci right 9.979809e-01	k: 1417027	n:1420000
KS ci ratio: 2.771856e+00	ci left: 1.782944e-08	ci right 3.923686e-06	k: 1	n:1420000
FIP1L1   1420000 perm   1103 sec   (1287 perm/sec)   p_kst 7.042254e-07   p_cons 9.979063e-01   p_joint 6.338028e-06

Joint ci ratio: 1.239608e+00	ci left: 2.877887e-06	ci right 1.194738e-05	k: 9	n:1430000
Cons ci ratio: 1.500260e-04	ci left: 9.978343e-01	ci right 9.979847e-01	k: 1427012	n:1430000
KS ci ratio: 2.771856e+00	ci left: 1.770476e-08	ci right 3.896248e-06	k: 1	n:1430000
FIP1L1   1430000 perm   1116 sec   (1281 perm/sec)   p_kst 6.993007e-07   p_cons 9.979105e-01   p_joint 6.293706e-06

Joint ci ratio: 1.239608e+00	ci left: 2.857902e-06	ci right 1.186441e-05	k: 9	n:1440000
Cons ci ratio: 1.494319e-04	ci left: 9.978366e-01	ci right 9.979864e-01	k: 1436994	n:1440000
KS ci ratio: 2.771856e+00	ci left: 1.758181e-08	ci right 3.869191e-06	k: 1	n:1440000
FIP1L1   1440000 perm   1130 sec   (1275 perm/sec)   p_kst 6.944444e-07   p_cons 9.979125e-01   p_joint 6.250000e-06

Joint ci ratio: 1.239608e+00	ci left: 2.838192e-06	ci right 1.178259e-05	k: 9	n:1450000
Cons ci ratio: 1.488940e-04	ci left: 9.978375e-01	ci right 9.979867e-01	k: 1446974	n:1450000
KS ci ratio: 2.771856e+00	ci left: 1.746056e-08	ci right 3.842507e-06	k: 1	n:1450000
FIP1L1   1450000 perm   1143 sec   (1268 perm/sec)   p_kst 6.896552e-07   p_cons 9.979131e-01   p_joint 6.206897e-06

Joint ci ratio: 1.239608e+00	ci left: 2.818752e-06	ci right 1.170189e-05	k: 9	n:1460000
Cons ci ratio: 1.485813e-04	ci left: 9.978321e-01	ci right 9.979810e-01	k: 1456945	n:1460000
KS ci ratio: 2.771856e+00	ci left: 1.734096e-08	ci right 3.816188e-06	k: 1	n:1460000
FIP1L1   1460000 perm   1157 sec   (1262 perm/sec)   p_kst 6.849315e-07   p_cons 9.979075e-01   p_joint 6.164384e-06

Joint ci ratio: 1.239608e+00	ci left: 2.799577e-06	ci right 1.162228e-05	k: 9	n:1470000
Cons ci ratio: 1.480526e-04	ci left: 9.978330e-01	ci right 9.979814e-01	k: 1466925	n:1470000
KS ci ratio: 2.771856e+00	ci left: 1.722300e-08	ci right 3.790228e-06	k: 1	n:1470000
FIP1L1   1470000 perm   1170 sec   (1256 perm/sec)   p_kst 6.802721e-07   p_cons 9.979082e-01   p_joint 6.122449e-06

Joint ci ratio: 1.239608e+00	ci left: 2.780661e-06	ci right 1.154375e-05	k: 9	n:1480000
Cons ci ratio: 1.474101e-04	ci left: 9.978373e-01	ci right 9.979851e-01	k: 1476910	n:1480000
KS ci ratio: 2.771856e+00	ci left: 1.710663e-08	ci right 3.764618e-06	k: 1	n:1480000
FIP1L1   1480000 perm   1184 sec   (1250 perm/sec)   p_kst 6.756757e-07   p_cons 9.979122e-01   p_joint 6.081081e-06

Joint ci ratio: 1.239608e+00	ci left: 2.761999e-06	ci right 1.146628e-05	k: 9	n:1490000
Cons ci ratio: 1.468936e-04	ci left: 9.978382e-01	ci right 9.979854e-01	k: 1486890	n:1490000
KS ci ratio: 2.771856e+00	ci left: 1.699182e-08	ci right 3.739352e-06	k: 1	n:1490000
FIP1L1   1490000 perm   1198 sec   (1244 perm/sec)   p_kst 6.711409e-07   p_cons 9.979128e-01   p_joint 6.040268e-06

Joint ci ratio: 1.385925e+00	ci left: 1.876244e-06	ci right 9.615093e-06	k: 7	n:1500000
Cons ci ratio: 1.463826e-04	ci left: 9.978390e-01	ci right 9.979857e-01	k: 1496870	n:1500000
KS ci ratio: 2.771856e+00	ci left: 1.687854e-08	ci right 3.714423e-06	k: 1	n:1500000
FIP1L1   1500000 perm   1211 sec   (1238 perm/sec)   p_kst 6.666667e-07   p_cons 9.979133e-01   p_joint 4.666667e-06

Joint ci ratio: 1.385925e+00	ci left: 1.863819e-06	ci right 9.551417e-06	k: 7	n:1510000
Cons ci ratio: 1.458536e-04	ci left: 9.978405e-01	ci right 9.979867e-01	k: 1506851	n:1510000
KS ci ratio: 2.771856e+00	ci left: 1.676676e-08	ci right 3.689824e-06	k: 1	n:1510000
FIP1L1   1510000 perm   1227 sec   (1231 perm/sec)   p_kst 6.622517e-07   p_cons 9.979146e-01   p_joint 4.635762e-06

Joint ci ratio: 1.385925e+00	ci left: 1.851557e-06	ci right 9.488579e-06	k: 7	n:1520000
Cons ci ratio: 1.453073e-04	ci left: 9.978427e-01	ci right 9.979883e-01	k: 1516833	n:1520000
KS ci ratio: 2.771856e+00	ci left: 1.665645e-08	ci right 3.665549e-06	k: 1	n:1520000
FIP1L1   1520000 perm   1241 sec   (1225 perm/sec)   p_kst 6.578947e-07   p_cons 9.979164e-01   p_joint 4.605263e-06

Joint ci ratio: 1.481617e+00	ci left: 1.439148e-06	ci right 8.535584e-06	k: 6	n:1530000
Cons ci ratio: 1.446986e-04	ci left: 9.978468e-01	ci right 9.979918e-01	k: 1526818	n:1530000
KS ci ratio: 2.771856e+00	ci left: 1.654759e-08	ci right 3.641592e-06	k: 1	n:1530000
FIP1L1   1530000 perm   1256 sec   (1219 perm/sec)   p_kst 6.535948e-07   p_cons 9.979203e-01   p_joint 3.921569e-06

Joint ci ratio: 1.481617e+00	ci left: 1.429803e-06	ci right 8.480158e-06	k: 6	n:1540000
Cons ci ratio: 1.442551e-04	ci left: 9.978462e-01	ci right 9.979908e-01	k: 1536796	n:1540000
KS ci ratio: 2.771856e+00	ci left: 1.644014e-08	ci right 3.617945e-06	k: 1	n:1540000
FIP1L1   1540000 perm   1270 sec   (1213 perm/sec)   p_kst 6.493506e-07   p_cons 9.979195e-01   p_joint 3.896104e-06

Joint ci ratio: 1.481617e+00	ci left: 1.420578e-06	ci right 8.425448e-06	k: 6	n:1550000
Cons ci ratio: 1.436591e-04	ci left: 9.978503e-01	ci right 9.979943e-01	k: 1546781	n:1550000
KS ci ratio: 2.771856e+00	ci left: 1.633407e-08	ci right 3.594603e-06	k: 1	n:1550000
FIP1L1   1550000 perm   1284 sec   (1207 perm/sec)   p_kst 6.451613e-07   p_cons 9.979232e-01   p_joint 3.870968e-06

Joint ci ratio: 1.481617e+00	ci left: 1.411472e-06	ci right 8.371439e-06	k: 6	n:1560000
Cons ci ratio: 1.431143e-04	ci left: 9.978530e-01	ci right 9.979964e-01	k: 1556764	n:1560000
KS ci ratio: 2.771856e+00	ci left: 1.622936e-08	ci right 3.571561e-06	k: 1	n:1560000
FIP1L1   1560000 perm   1298 sec   (1202 perm/sec)   p_kst 6.410256e-07   p_cons 9.979256e-01   p_joint 3.846154e-06

Joint ci ratio: 1.481617e+00	ci left: 1.402482e-06	ci right 8.318118e-06	k: 6	n:1570000
Cons ci ratio: 1.426194e-04	ci left: 9.978544e-01	ci right 9.979973e-01	k: 1566745	n:1570000
KS ci ratio: 2.771856e+00	ci left: 1.612599e-08	ci right 3.548812e-06	k: 1	n:1570000
FIP1L1   1570000 perm   1312 sec   (1196 perm/sec)   p_kst 6.369427e-07   p_cons 9.979268e-01   p_joint 3.821656e-06

Joint ci ratio: 1.481617e+00	ci left: 1.393605e-06	ci right 8.265471e-06	k: 6	n:1580000
Cons ci ratio: 1.420426e-04	ci left: 9.978583e-01	ci right 9.980006e-01	k: 1576730	n:1580000
KS ci ratio: 2.771856e+00	ci left: 1.602393e-08	ci right 3.526351e-06	k: 1	n:1580000
FIP1L1   1580000 perm   1327 sec   (1191 perm/sec)   p_kst 6.329114e-07   p_cons 9.979304e-01   p_joint 3.797468e-06

Joint ci ratio: 1.481617e+00	ci left: 1.384840e-06	ci right 8.213487e-06	k: 6	n:1590000
Cons ci ratio: 1.415585e-04	ci left: 9.978596e-01	ci right 9.980015e-01	k: 1586711	n:1590000
KS ci ratio: 2.771856e+00	ci left: 1.592315e-08	ci right 3.504173e-06	k: 1	n:1590000
FIP1L1   1590000 perm   1341 sec   (1185 perm/sec)   p_kst 6.289308e-07   p_cons 9.979314e-01   p_joint 3.773585e-06

Joint ci ratio: 1.481617e+00	ci left: 1.376185e-06	ci right 8.162153e-06	k: 6	n:1600000
Cons ci ratio: 1.412288e-04	ci left: 9.978564e-01	ci right 9.979980e-01	k: 1596685	n:1600000
KS ci ratio: 2.771856e+00	ci left: 1.582363e-08	ci right 3.482272e-06	k: 1	n:1600000
FIP1L1   1600000 perm   1356 sec   (1180 perm/sec)   p_kst 6.250000e-07   p_cons 9.979281e-01   p_joint 3.750000e-06

Joint ci ratio: 1.481617e+00	ci left: 1.367637e-06	ci right 8.111457e-06	k: 6	n:1610000
Cons ci ratio: 1.406472e-04	ci left: 9.978609e-01	ci right 9.980019e-01	k: 1606671	n:1610000
KS ci ratio: 2.771856e+00	ci left: 1.572535e-08	ci right 3.460643e-06	k: 1	n:1610000
FIP1L1   1610000 perm   1371 sec   (1174 perm/sec)   p_kst 6.211180e-07   p_cons 9.979323e-01   p_joint 3.726708e-06

Joint ci ratio: 1.481617e+00	ci left: 1.359195e-06	ci right 8.061386e-06	k: 6	n:1620000
Cons ci ratio: 1.401982e-04	ci left: 9.978616e-01	ci right 9.980021e-01	k: 1616651	n:1620000
KS ci ratio: 2.771856e+00	ci left: 1.562828e-08	ci right 3.439281e-06	k: 1	n:1620000
FIP1L1   1620000 perm   1386 sec   (1169 perm/sec)   p_kst 6.172840e-07   p_cons 9.979327e-01   p_joint 3.703704e-06

Joint ci ratio: 1.481617e+00	ci left: 1.350857e-06	ci right 8.011930e-06	k: 6	n:1630000
Cons ci ratio: 1.397118e-04	ci left: 9.978635e-01	ci right 9.980035e-01	k: 1626633	n:1630000
KS ci ratio: 2.771856e+00	ci left: 1.553240e-08	ci right 3.418181e-06	k: 1	n:1630000
FIP1L1   1630000 perm   1402 sec   (1163 perm/sec)   p_kst 6.134969e-07   p_cons 9.979344e-01   p_joint 3.680982e-06

Joint ci ratio: 1.481617e+00	ci left: 1.342620e-06	ci right 7.963077e-06	k: 6	n:1640000
Cons ci ratio: 1.392921e-04	ci left: 9.978635e-01	ci right 9.980031e-01	k: 1636612	n:1640000
KS ci ratio: 2.771856e+00	ci left: 1.543769e-08	ci right 3.397339e-06	k: 1	n:1640000
FIP1L1   1640000 perm   1417 sec   (1157 perm/sec)   p_kst 6.097561e-07   p_cons 9.979341e-01   p_joint 3.658537e-06

Joint ci ratio: 1.481617e+00	ci left: 1.334482e-06	ci right 7.914816e-06	k: 6	n:1650000
Cons ci ratio: 1.387537e-04	ci left: 9.978672e-01	ci right 9.980062e-01	k: 1646597	n:1650000
KS ci ratio: 2.771856e+00	ci left: 1.534413e-08	ci right 3.376749e-06	k: 1	n:1650000
FIP1L1   1650000 perm   1432 sec   (1153 perm/sec)   p_kst 6.060606e-07   p_cons 9.979376e-01   p_joint 3.636364e-06

Joint ci ratio: 1.481617e+00	ci left: 1.326443e-06	ci right 7.867136e-06	k: 6	n:1660000
Cons ci ratio: 1.382617e-04	ci left: 9.978696e-01	ci right 9.980082e-01	k: 1656580	n:1660000
KS ci ratio: 2.771856e+00	ci left: 1.525169e-08	ci right 3.356407e-06	k: 1	n:1660000
FIP1L1   1660000 perm   1446 sec   (1148 perm/sec)   p_kst 6.024096e-07   p_cons 9.979398e-01   p_joint 3.614458e-06

Joint ci ratio: 1.481617e+00	ci left: 1.318501e-06	ci right 7.820028e-06	k: 6	n:1670000
Cons ci ratio: 1.378951e-04	ci left: 9.978684e-01	ci right 9.980066e-01	k: 1666557	n:1670000
KS ci ratio: 2.771856e+00	ci left: 1.516036e-08	ci right 3.336309e-06	k: 1	n:1670000
FIP1L1   1670000 perm   1462 sec   (1142 perm/sec)   p_kst 5.988024e-07   p_cons 9.979383e-01   p_joint 3.592814e-06

Joint ci ratio: 1.385926e+00	ci left: 1.675218e-06	ci right 8.584907e-06	k: 7	n:1680000
Cons ci ratio: 1.374717e-04	ci left: 9.978689e-01	ci right 9.980067e-01	k: 1676537	n:1680000
KS ci ratio: 2.771856e+00	ci left: 1.507012e-08	ci right 3.316450e-06	k: 1	n:1680000
FIP1L1   1680000 perm   1479 sec   (1136 perm/sec)   p_kst 5.952381e-07   p_cons 9.979387e-01   p_joint 4.166667e-06

Joint ci ratio: 1.385926e+00	ci left: 1.665305e-06	ci right 8.534109e-06	k: 7	n:1690000
Cons ci ratio: 1.369733e-04	ci left: 9.978719e-01	ci right 9.980092e-01	k: 1686521	n:1690000
KS ci ratio: 2.771856e+00	ci left: 1.498095e-08	ci right 3.296826e-06	k: 1	n:1690000
FIP1L1   1690000 perm   1495 sec   (1130 perm/sec)   p_kst 5.917160e-07   p_cons 9.979414e-01   p_joint 4.142012e-06

Joint ci ratio: 1.385926e+00	ci left: 1.655509e-06	ci right 8.483908e-06	k: 7	n:1700000
Cons ci ratio: 1.365974e-04	ci left: 9.978713e-01	ci right 9.980082e-01	k: 1696499	n:1700000
KS ci ratio: 2.771856e+00	ci left: 1.489283e-08	ci right 3.277433e-06	k: 1	n:1700000
FIP1L1   1700000 perm   1510 sec   (1126 perm/sec)   p_kst 5.882353e-07   p_cons 9.979406e-01   p_joint 4.117647e-06

Joint ci ratio: 1.385926e+00	ci left: 1.645828e-06	ci right 8.434295e-06	k: 7	n:1710000
Cons ci ratio: 1.360889e-04	ci left: 9.978748e-01	ci right 9.980112e-01	k: 1706484	n:1710000
KS ci ratio: 2.771856e+00	ci left: 1.480574e-08	ci right 3.258267e-06	k: 1	n:1710000
FIP1L1   1710000 perm   1526 sec   (1121 perm/sec)   p_kst 5.847953e-07   p_cons 9.979439e-01   p_joint 4.093567e-06

Joint ci ratio: 1.385926e+00	ci left: 1.636259e-06	ci right 8.385258e-06	k: 7	n:1720000
Cons ci ratio: 1.356818e-04	ci left: 9.978754e-01	ci right 9.980113e-01	k: 1716464	n:1720000
KS ci ratio: 2.771856e+00	ci left: 1.471966e-08	ci right 3.239323e-06	k: 1	n:1720000
FIP1L1   1720000 perm   1542 sec   (1116 perm/sec)   p_kst 5.813953e-07   p_cons 9.979442e-01   p_joint 4.069767e-06

Joint ci ratio: 1.385926e+00	ci left: 1.626801e-06	ci right 8.336789e-06	k: 7	n:1730000
Cons ci ratio: 1.352593e-04	ci left: 9.978765e-01	ci right 9.980120e-01	k: 1726445	n:1730000
KS ci ratio: 2.771856e+00	ci left: 1.463457e-08	ci right 3.220599e-06	k: 1	n:1730000
FIP1L1   1730000 perm   1558 sec   (1111 perm/sec)   p_kst 5.780347e-07   p_cons 9.979451e-01   p_joint 4.046243e-06

Joint ci ratio: 1.385926e+00	ci left: 1.617452e-06	ci right 8.288876e-06	k: 7	n:1740000
Cons ci ratio: 1.347650e-04	ci left: 9.978799e-01	ci right 9.980150e-01	k: 1736430	n:1740000
KS ci ratio: 2.771856e+00	ci left: 1.455046e-08	ci right 3.202090e-06	k: 1	n:1740000
FIP1L1   1740000 perm   1574 sec   (1106 perm/sec)   p_kst 5.747126e-07   p_cons 9.979483e-01   p_joint 4.022989e-06

Joint ci ratio: 1.385926e+00	ci left: 1.608209e-06	ci right 8.241511e-06	k: 7	n:1750000
Cons ci ratio: 1.342759e-04	ci left: 9.978833e-01	ci right 9.980179e-01	k: 1746415	n:1750000
KS ci ratio: 2.771856e+00	ci left: 1.446732e-08	ci right 3.183792e-06	k: 1	n:1750000
FIP1L1   1750000 perm   1589 sec   (1101 perm/sec)   p_kst 5.714286e-07   p_cons 9.979514e-01   p_joint 4.000000e-06

Joint ci ratio: 1.385926e+00	ci left: 1.599071e-06	ci right 8.194685e-06	k: 7	n:1760000
Cons ci ratio: 1.338475e-04	ci left: 9.978850e-01	ci right 9.980191e-01	k: 1756397	n:1760000
KS ci ratio: 2.771856e+00	ci left: 1.438512e-08	ci right 3.165702e-06	k: 1	n:1760000
FIP1L1   1760000 perm   1606 sec   (1096 perm/sec)   p_kst 5.681818e-07   p_cons 9.979528e-01   p_joint 3.977273e-06

Joint ci ratio: 1.385926e+00	ci left: 1.590037e-06	ci right 8.148387e-06	k: 7	n:1770000
Cons ci ratio: 1.334970e-04	ci left: 9.978843e-01	ci right 9.980180e-01	k: 1766375	n:1770000
KS ci ratio: 2.771856e+00	ci left: 1.430385e-08	ci right 3.147817e-06	k: 1	n:1770000
FIP1L1   1770000 perm   1622 sec   (1091 perm/sec)   p_kst 5.649718e-07   p_cons 9.979520e-01   p_joint 3.954802e-06

Joint ci ratio: 1.385926e+00	ci left: 1.581104e-06	ci right 8.102610e-06	k: 7	n:1780000
Cons ci ratio: 1.332223e-04	ci left: 9.978813e-01	ci right 9.980148e-01	k: 1776349	n:1780000
KS ci ratio: 2.771856e+00	ci left: 1.422349e-08	ci right 3.130133e-06	k: 1	n:1780000
FIP1L1   1780000 perm   1639 sec   (1086 perm/sec)   p_kst 5.617978e-07   p_cons 9.979489e-01   p_joint 3.932584e-06

Joint ci ratio: 1.385926e+00	ci left: 1.572271e-06	ci right 8.057344e-06	k: 7	n:1790000
Cons ci ratio: 1.327677e-04	ci left: 9.978841e-01	ci right 9.980171e-01	k: 1786333	n:1790000
KS ci ratio: 2.771856e+00	ci left: 1.414403e-08	ci right 3.112646e-06	k: 1	n:1790000
FIP1L1   1790000 perm   1655 sec   (1081 perm/sec)   p_kst 5.586592e-07   p_cons 9.979514e-01   p_joint 3.910615e-06

Joint ci ratio: 1.239609e+00	ci left: 2.286321e-06	ci right 9.491536e-06	k: 9	n:1800000
Cons ci ratio: 1.324076e-04	ci left: 9.978840e-01	ci right 9.980166e-01	k: 1796312	n:1800000
KS ci ratio: 2.771856e+00	ci left: 1.406545e-08	ci right 3.095354e-06	k: 1	n:1800000
FIP1L1   1800000 perm   1672 sec   (1077 perm/sec)   p_kst 5.555556e-07   p_cons 9.979511e-01   p_joint 5.000000e-06

Joint ci ratio: 1.239609e+00	ci left: 2.273689e-06	ci right 9.439097e-06	k: 9	n:1810000
Cons ci ratio: 1.319968e-04	ci left: 9.978856e-01	ci right 9.980178e-01	k: 1806294	n:1810000
KS ci ratio: 2.771856e+00	ci left: 1.398774e-08	ci right 3.078252e-06	k: 1	n:1810000
FIP1L1   1810000 perm   1689 sec   (1072 perm/sec)   p_kst 5.524862e-07   p_cons 9.979525e-01   p_joint 4.972376e-06

Joint ci ratio: 1.239609e+00	ci left: 2.261196e-06	ci right 9.387234e-06	k: 9	n:1820000
Cons ci ratio: 1.318373e-04	ci left: 9.978793e-01	ci right 9.980114e-01	k: 1816262	n:1820000
KS ci ratio: 2.771856e+00	ci left: 1.391088e-08	ci right 3.061339e-06	k: 1	n:1820000
FIP1L1   1820000 perm   1706 sec   (1067 perm/sec)   p_kst 5.494505e-07   p_cons 9.979462e-01   p_joint 4.945055e-06

Joint ci ratio: 1.239609e+00	ci left: 2.248840e-06	ci right 9.335938e-06	k: 9	n:1830000
Cons ci ratio: 1.314496e-04	ci left: 9.978803e-01	ci right 9.980121e-01	k: 1826243	n:1830000
KS ci ratio: 2.771856e+00	ci left: 1.383487e-08	ci right 3.044610e-06	k: 1	n:1830000
FIP1L1   1830000 perm   1723 sec   (1062 perm/sec)   p_kst 5.464481e-07   p_cons 9.979470e-01   p_joint 4.918033e-06

Joint ci ratio: 1.239609e+00	ci left: 2.236618e-06	ci right 9.285199e-06	k: 9	n:1840000
Cons ci ratio: 1.310478e-04	ci left: 9.978819e-01	ci right 9.980132e-01	k: 1836225	n:1840000
KS ci ratio: 2.771856e+00	ci left: 1.375968e-08	ci right 3.028063e-06	k: 1	n:1840000
FIP1L1   1840000 perm   1740 sec   (1057 perm/sec)   p_kst 5.434783e-07   p_cons 9.979484e-01   p_joint 4.891304e-06

Joint ci ratio: 1.239609e+00	ci left: 2.224528e-06	ci right 9.235009e-06	k: 9	n:1850000
Cons ci ratio: 1.306669e-04	ci left: 9.978829e-01	ci right 9.980139e-01	k: 1846206	n:1850000
KS ci ratio: 2.771856e+00	ci left: 1.368530e-08	ci right 3.011695e-06	k: 1	n:1850000
FIP1L1   1850000 perm   1757 sec   (1053 perm/sec)   p_kst 5.405405e-07   p_cons 9.979492e-01   p_joint 4.864865e-06

Joint ci ratio: 1.239609e+00	ci left: 2.212568e-06	ci right 9.185358e-06	k: 9	n:1860000
Cons ci ratio: 1.304432e-04	ci left: 9.978790e-01	ci right 9.980097e-01	k: 1856178	n:1860000
KS ci ratio: 2.771856e+00	ci left: 1.361172e-08	ci right 2.995504e-06	k: 1	n:1860000
FIP1L1   1860000 perm   1774 sec   (1048 perm/sec)   p_kst 5.376344e-07   p_cons 9.979452e-01   p_joint 4.838710e-06

Joint ci ratio: 1.239609e+00	ci left: 2.200737e-06	ci right 9.136239e-06	k: 9	n:1870000
Cons ci ratio: 1.301185e-04	ci left: 9.978784e-01	ci right 9.980088e-01	k: 1866156	n:1870000
KS ci ratio: 2.771856e+00	ci left: 1.353893e-08	ci right 2.979485e-06	k: 1	n:1870000
FIP1L1   1870000 perm   1792 sec   (1043 perm/sec)   p_kst 5.347594e-07   p_cons 9.979444e-01   p_joint 4.812834e-06

Joint ci ratio: 1.239609e+00	ci left: 2.189031e-06	ci right 9.087642e-06	k: 9	n:1880000
Cons ci ratio: 1.298466e-04	ci left: 9.978762e-01	ci right 9.980063e-01	k: 1876131	n:1880000
KS ci ratio: 2.771856e+00	ci left: 1.346692e-08	ci right 2.963636e-06	k: 1	n:1880000
FIP1L1   1880000 perm   1810 sec   (1039 perm/sec)   p_kst 5.319149e-07   p_cons 9.979420e-01   p_joint 4.787234e-06

Joint ci ratio: 1.239609e+00	ci left: 2.177448e-06	ci right 9.039559e-06	k: 9	n:1890000
Cons ci ratio: 1.294595e-04	ci left: 9.978778e-01	ci right 9.980075e-01	k: 1886113	n:1890000
KS ci ratio: 2.771856e+00	ci left: 1.339567e-08	ci right 2.947956e-06	k: 1	n:1890000
FIP1L1   1890000 perm   1828 sec   (1034 perm/sec)   p_kst 5.291005e-07   p_cons 9.979434e-01   p_joint 4.761905e-06

Joint ci ratio: 1.239609e+00	ci left: 2.165988e-06	ci right 8.991983e-06	k: 9	n:1900000
Cons ci ratio: 1.290758e-04	ci left: 9.978793e-01	ci right 9.980086e-01	k: 1896095	n:1900000
KS ci ratio: 2.771856e+00	ci left: 1.332516e-08	ci right 2.932440e-06	k: 1	n:1900000
FIP1L1   1900000 perm   1845 sec   (1030 perm/sec)   p_kst 5.263158e-07   p_cons 9.979447e-01   p_joint 4.736842e-06

Joint ci ratio: 1.239609e+00	ci left: 2.154648e-06	ci right 8.944904e-06	k: 9	n:1910000
Cons ci ratio: 1.286626e-04	ci left: 9.978819e-01	ci right 9.980108e-01	k: 1906079	n:1910000
KS ci ratio: 2.771856e+00	ci left: 1.325540e-08	ci right 2.917087e-06	k: 1	n:1910000
FIP1L1   1910000 perm   1863 sec   (1025 perm/sec)   p_kst 5.235602e-07   p_cons 9.979471e-01   p_joint 4.712042e-06

Joint ci ratio: 1.239609e+00	ci left: 2.143426e-06	ci right 8.898316e-06	k: 9	n:1920000
Cons ci ratio: 1.282205e-04	ci left: 9.978855e-01	ci right 9.980140e-01	k: 1916065	n:1920000
KS ci ratio: 2.771856e+00	ci left: 1.318636e-08	ci right 2.901894e-06	k: 1	n:1920000
FIP1L1   1920000 perm   1881 sec   (1021 perm/sec)   p_kst 5.208333e-07   p_cons 9.979505e-01   p_joint 4.687500e-06

Joint ci ratio: 1.239609e+00	ci left: 2.132320e-06	ci right 8.852211e-06	k: 9	n:1930000
Cons ci ratio: 1.280416e-04	ci left: 9.978807e-01	ci right 9.980090e-01	k: 1926035	n:1930000
KS ci ratio: 2.771856e+00	ci left: 1.311804e-08	ci right 2.886858e-06	k: 1	n:1930000
FIP1L1   1930000 perm   1899 sec   (1017 perm/sec)   p_kst 5.181347e-07   p_cons 9.979456e-01   p_joint 4.663212e-06

Joint ci ratio: 1.239609e+00	ci left: 2.121328e-06	ci right 8.806581e-06	k: 9	n:1940000
Cons ci ratio: 1.276382e-04	ci left: 9.978833e-01	ci right 9.980111e-01	k: 1936019	n:1940000
KS ci ratio: 2.771856e+00	ci left: 1.305042e-08	ci right 2.871978e-06	k: 1	n:1940000
FIP1L1   1940000 perm   1916 sec   (1013 perm/sec)   p_kst 5.154639e-07   p_cons 9.979479e-01   p_joint 4.639175e-06

Joint ci ratio: 1.239609e+00	ci left: 2.110450e-06	ci right 8.761420e-06	k: 9	n:1950000
Cons ci ratio: 1.272543e-04	ci left: 9.978853e-01	ci right 9.980127e-01	k: 1946002	n:1950000
KS ci ratio: 2.771856e+00	ci left: 1.298349e-08	ci right 2.857250e-06	k: 1	n:1950000
FIP1L1   1950000 perm   1933 sec   (1009 perm/sec)   p_kst 5.128205e-07   p_cons 9.979497e-01   p_joint 4.615385e-06

Joint ci ratio: 1.239609e+00	ci left: 2.099682e-06	ci right 8.716718e-06	k: 9	n:1960000
Cons ci ratio: 1.268579e-04	ci left: 9.978878e-01	ci right 9.980148e-01	k: 1955986	n:1960000
KS ci ratio: 2.771856e+00	ci left: 1.291725e-08	ci right 2.842672e-06	k: 1	n:1960000
FIP1L1   1960000 perm   1952 sec   (1004 perm/sec)   p_kst 5.102041e-07   p_cons 9.979520e-01   p_joint 4.591837e-06

Joint ci ratio: 1.239609e+00	ci left: 2.089024e-06	ci right 8.672471e-06	k: 9	n:1970000
Cons ci ratio: 1.265593e-04	ci left: 9.978871e-01	ci right 9.980139e-01	k: 1965964	n:1970000
KS ci ratio: 2.771856e+00	ci left: 1.285168e-08	ci right 2.828242e-06	k: 1	n:1970000
FIP1L1   1970000 perm   1970 sec   (1000 perm/sec)   p_kst 5.076142e-07   p_cons 9.979513e-01   p_joint 4.568528e-06

Joint ci ratio: 1.239609e+00	ci left: 2.078473e-06	ci right 8.628671e-06	k: 9	n:1980000
Cons ci ratio: 1.261693e-04	ci left: 9.978896e-01	ci right 9.980160e-01	k: 1975948	n:1980000
KS ci ratio: 2.771856e+00	ci left: 1.278677e-08	ci right 2.813958e-06	k: 1	n:1980000
FIP1L1   1980000 perm   1988 sec   (996 perm/sec)   p_kst 5.050505e-07   p_cons 9.979535e-01   p_joint 4.545455e-06

Joint ci ratio: 1.239609e+00	ci left: 2.068029e-06	ci right 8.585311e-06	k: 9	n:1990000
Cons ci ratio: 1.258446e-04	ci left: 9.978900e-01	ci right 9.980161e-01	k: 1985928	n:1990000
KS ci ratio: 2.771856e+00	ci left: 1.272252e-08	ci right 2.799818e-06	k: 1	n:1990000
FIP1L1   1990000 perm   2006 sec   (992 perm/sec)   p_kst 5.025126e-07   p_cons 9.979538e-01   p_joint 4.522613e-06

Joint ci ratio: 1.239609e+00	ci left: 2.057689e-06	ci right 8.542384e-06	k: 9	n:2000000
Cons ci ratio: 1.256606e-04	ci left: 9.978858e-01	ci right 9.980117e-01	k: 1995899	n:2000000
KS ci ratio: 2.771857e+00	ci left: 1.265890e-08	ci right 2.785819e-06	k: 1	n:2000000
FIP1L1   2000000 perm   2024 sec   (988 perm/sec)   p_kst 5.000000e-07   p_cons 9.979495e-01   p_joint 4.500000e-06

Joint ci ratio: 1.239609e+00	ci left: 2.047451e-06	ci right 8.499885e-06	k: 9	n:2010000
Cons ci ratio: 1.252332e-04	ci left: 9.978898e-01	ci right 9.980152e-01	k: 2005886	n:2010000
KS ci ratio: 2.771857e+00	ci left: 1.259592e-08	ci right 2.771959e-06	k: 1	n:2010000
FIP1L1   2010000 perm   2042 sec   (984 perm/sec)   p_kst 4.975124e-07   p_cons 9.979532e-01   p_joint 4.477612e-06

Joint ci ratio: 1.239609e+00	ci left: 2.037315e-06	ci right 8.457807e-06	k: 9	n:2020000
Cons ci ratio: 1.248854e-04	ci left: 9.978912e-01	ci right 9.980163e-01	k: 2015868	n:2020000
KS ci ratio: 2.771857e+00	ci left: 1.253357e-08	ci right 2.758236e-06	k: 1	n:2020000
FIP1L1   2020000 perm   2061 sec   (980 perm/sec)   p_kst 4.950495e-07   p_cons 9.979545e-01   p_joint 4.455446e-06

Joint ci ratio: 1.239609e+00	ci left: 2.027279e-06	ci right 8.416143e-06	k: 9	n:2030000
Cons ci ratio: 1.246156e-04	ci left: 9.978901e-01	ci right 9.980149e-01	k: 2025845	n:2030000
KS ci ratio: 2.771857e+00	ci left: 1.247183e-08	ci right 2.744649e-06	k: 1	n:2030000
FIP1L1   2030000 perm   2079 sec   (976 perm/sec)   p_kst 4.926108e-07   p_cons 9.979532e-01   p_joint 4.433498e-06

Joint ci ratio: 1.239610e+00	ci left: 2.017342e-06	ci right 8.374887e-06	k: 9	n:2040000
Cons ci ratio: 1.243027e-04	ci left: 9.978905e-01	ci right 9.980150e-01	k: 2035825	n:2040000
KS ci ratio: 2.771857e+00	ci left: 1.241069e-08	ci right 2.731195e-06	k: 1	n:2040000
FIP1L1   2040000 perm   2098 sec   (972 perm/sec)   p_kst 4.901961e-07   p_cons 9.979534e-01   p_joint 4.411765e-06

Joint ci ratio: 1.239610e+00	ci left: 2.007501e-06	ci right 8.334034e-06	k: 9	n:2050000
Cons ci ratio: 1.240514e-04	ci left: 9.978889e-01	ci right 9.980131e-01	k: 2045801	n:2050000
KS ci ratio: 2.771857e+00	ci left: 1.235015e-08	ci right 2.717872e-06	k: 1	n:2050000
FIP1L1   2050000 perm   2116 sec   (969 perm/sec)   p_kst 4.878049e-07   p_cons 9.979517e-01   p_joint 4.390244e-06

Joint ci ratio: 1.239610e+00	ci left: 1.997756e-06	ci right 8.293578e-06	k: 9	n:2060000
Cons ci ratio: 1.238309e-04	ci left: 9.978863e-01	ci right 9.980104e-01	k: 2055775	n:2060000
KS ci ratio: 2.771857e+00	ci left: 1.229020e-08	ci right 2.704678e-06	k: 1	n:2060000
FIP1L1   2060000 perm   2135 sec   (965 perm/sec)   p_kst 4.854369e-07   p_cons 9.979490e-01   p_joint 4.368932e-06

Joint ci ratio: 1.239610e+00	ci left: 1.988105e-06	ci right 8.253512e-06	k: 9	n:2070000
Cons ci ratio: 1.235676e-04	ci left: 9.978852e-01	ci right 9.980090e-01	k: 2065752	n:2070000
KS ci ratio: 2.771857e+00	ci left: 1.223083e-08	ci right 2.691612e-06	k: 1	n:2070000
FIP1L1   2070000 perm   2154 sec   (961 perm/sec)   p_kst 4.830918e-07   p_cons 9.979478e-01   p_joint 4.347826e-06

Joint ci ratio: 1.239610e+00	ci left: 1.978547e-06	ci right 8.213832e-06	k: 9	n:2080000
Cons ci ratio: 1.232337e-04	ci left: 9.978866e-01	ci right 9.980101e-01	k: 2075734	n:2080000
KS ci ratio: 2.771857e+00	ci left: 1.217202e-08	ci right 2.678672e-06	k: 1	n:2080000
FIP1L1   2080000 perm   2173 sec   (957 perm/sec)   p_kst 4.807692e-07   p_cons 9.979490e-01   p_joint 4.326923e-06

Joint ci ratio: 1.239610e+00	ci left: 1.969080e-06	ci right 8.174531e-06	k: 9	n:2090000
Cons ci ratio: 1.229886e-04	ci left: 9.978851e-01	ci right 9.980083e-01	k: 2085710	n:2090000
KS ci ratio: 2.771857e+00	ci left: 1.211378e-08	ci right 2.665855e-06	k: 1	n:2090000
FIP1L1   2090000 perm   2192 sec   (953 perm/sec)   p_kst 4.784689e-07   p_cons 9.979474e-01   p_joint 4.306220e-06

Joint ci ratio: 1.239610e+00	ci left: 1.959703e-06	ci right 8.135605e-06	k: 9	n:2100000
Cons ci ratio: 1.227163e-04	ci left: 9.978845e-01	ci right 9.980074e-01	k: 2095688	n:2100000
KS ci ratio: 2.771857e+00	ci left: 1.205610e-08	ci right 2.653161e-06	k: 1	n:2100000
FIP1L1   2100000 perm   2214 sec   (949 perm/sec)   p_kst 4.761905e-07   p_cons 9.979467e-01   p_joint 4.285714e-06

Joint ci ratio: 1.239610e+00	ci left: 1.950416e-06	ci right 8.097048e-06	k: 9	n:2110000
Cons ci ratio: 1.223893e-04	ci left: 9.978859e-01	ci right 9.980085e-01	k: 2105670	n:2110000
KS ci ratio: 2.771857e+00	ci left: 1.199896e-08	ci right 2.640586e-06	k: 1	n:2110000
FIP1L1   2110000 perm   2233 sec   (945 perm/sec)   p_kst 4.739336e-07   p_cons 9.979479e-01   p_joint 4.265403e-06

Joint ci ratio: 1.239610e+00	ci left: 1.941216e-06	ci right 8.058854e-06	k: 9	n:2120000
Cons ci ratio: 1.220929e-04	ci left: 9.978863e-01	ci right 9.980086e-01	k: 2115650	n:2120000
KS ci ratio: 2.771857e+00	ci left: 1.194236e-08	ci right 2.628131e-06	k: 1	n:2120000
FIP1L1   2120000 perm   2253 sec   (941 perm/sec)   p_kst 4.716981e-07   p_cons 9.979481e-01   p_joint 4.245283e-06

Joint ci ratio: 1.239610e+00	ci left: 1.932102e-06	ci right 8.021019e-06	k: 9	n:2130000
Cons ci ratio: 1.217428e-04	ci left: 9.978886e-01	ci right 9.980105e-01	k: 2125634	n:2130000
KS ci ratio: 2.771857e+00	ci left: 1.188629e-08	ci right 2.615792e-06	k: 1	n:2130000
FIP1L1   2130000 perm   2273 sec   (937 perm/sec)   p_kst 4.694836e-07   p_cons 9.979502e-01   p_joint 4.225352e-06

Joint ci ratio: 1.239610e+00	ci left: 1.923073e-06	ci right 7.983538e-06	k: 9	n:2140000
Cons ci ratio: 1.213955e-04	ci left: 9.978909e-01	ci right 9.980125e-01	k: 2135618	n:2140000
KS ci ratio: 2.771857e+00	ci left: 1.183075e-08	ci right 2.603569e-06	k: 1	n:2140000
FIP1L1   2140000 perm   2293 sec   (933 perm/sec)   p_kst 4.672897e-07   p_cons 9.979523e-01   p_joint 4.205607e-06

Joint ci ratio: 1.181921e+00	ci left: 2.230416e-06	ci right 8.553637e-06	k: 10	n:2150000
Cons ci ratio: 1.211889e-04	ci left: 9.978884e-01	ci right 9.980098e-01	k: 2145592	n:2150000
KS ci ratio: 2.263211e+00	ci left: 1.126555e-07	ci right 3.360316e-06	k: 2	n:2150000
FIP1L1   2150000 perm   2314 sec   (929 perm/sec)   p_kst 9.302326e-07   p_cons 9.979498e-01   p_joint 4.651163e-06

Joint ci ratio: 1.181921e+00	ci left: 2.220090e-06	ci right 8.514037e-06	k: 10	n:2160000
Cons ci ratio: 1.209832e-04	ci left: 9.978860e-01	ci right 9.980071e-01	k: 2155566	n:2160000
KS ci ratio: 2.263211e+00	ci left: 1.121339e-07	ci right 3.344759e-06	k: 2	n:2160000
FIP1L1   2160000 perm   2335 sec   (925 perm/sec)   p_kst 9.259259e-07   p_cons 9.979472e-01   p_joint 4.629630e-06

Joint ci ratio: 1.181921e+00	ci left: 2.209859e-06	ci right 8.474802e-06	k: 10	n:2170000
Cons ci ratio: 1.206425e-04	ci left: 9.978882e-01	ci right 9.980091e-01	k: 2165550	n:2170000
KS ci ratio: 2.263211e+00	ci left: 1.116172e-07	ci right 3.329345e-06	k: 2	n:2170000
FIP1L1   2170000 perm   2355 sec   (921 perm/sec)   p_kst 9.216590e-07   p_cons 9.979493e-01   p_joint 4.608295e-06

Joint ci ratio: 1.181921e+00	ci left: 2.199722e-06	ci right 8.435927e-06	k: 10	n:2180000
Cons ci ratio: 1.202912e-04	ci left: 9.978909e-01	ci right 9.980114e-01	k: 2175535	n:2180000
KS ci ratio: 2.263211e+00	ci left: 1.111052e-07	ci right 3.314073e-06	k: 2	n:2180000
FIP1L1   2180000 perm   2376 sec   (918 perm/sec)   p_kst 9.174312e-07   p_cons 9.979518e-01   p_joint 4.587156e-06

Joint ci ratio: 1.181921e+00	ci left: 2.189677e-06	ci right 8.397407e-06	k: 10	n:2190000
Cons ci ratio: 1.200633e-04	ci left: 9.978894e-01	ci right 9.980097e-01	k: 2185511	n:2190000
KS ci ratio: 2.263211e+00	ci left: 1.105979e-07	ci right 3.298940e-06	k: 2	n:2190000
FIP1L1   2190000 perm   2395 sec   (914 perm/sec)   p_kst 9.132420e-07   p_cons 9.979502e-01   p_joint 4.566210e-06

Joint ci ratio: 1.181921e+00	ci left: 2.179724e-06	ci right 8.359237e-06	k: 10	n:2200000
Cons ci ratio: 1.197967e-04	ci left: 9.978893e-01	ci right 9.980093e-01	k: 2195490	n:2200000
KS ci ratio: 2.263211e+00	ci left: 1.100951e-07	ci right 3.283945e-06	k: 2	n:2200000
FIP1L1   2200000 perm   2415 sec   (911 perm/sec)   p_kst 9.090909e-07   p_cons 9.979500e-01   p_joint 4.545455e-06

Joint ci ratio: 1.181921e+00	ci left: 2.169861e-06	ci right 8.321412e-06	k: 10	n:2210000
Cons ci ratio: 1.195716e-04	ci left: 9.978879e-01	ci right 9.980076e-01	k: 2205466	n:2210000
KS ci ratio: 2.263211e+00	ci left: 1.095970e-07	ci right 3.269086e-06	k: 2	n:2210000
FIP1L1   2210000 perm   2434 sec   (908 perm/sec)   p_kst 9.049774e-07   p_cons 9.979484e-01   p_joint 4.524887e-06

Joint ci ratio: 1.181921e+00	ci left: 2.160087e-06	ci right 8.283929e-06	k: 10	n:2220000
Cons ci ratio: 1.193607e-04	ci left: 9.978860e-01	ci right 9.980055e-01	k: 2215441	n:2220000
KS ci ratio: 2.263211e+00	ci left: 1.091033e-07	ci right 3.254360e-06	k: 2	n:2220000
FIP1L1   2220000 perm   2455 sec   (904 perm/sec)   p_kst 9.009009e-07   p_cons 9.979464e-01   p_joint 4.504505e-06

Joint ci ratio: 1.181921e+00	ci left: 2.150401e-06	ci right 8.246781e-06	k: 10	n:2230000
Cons ci ratio: 1.191379e-04	ci left: 9.978845e-01	ci right 9.980039e-01	k: 2225417	n:2230000
KS ci ratio: 2.263211e+00	ci left: 1.086140e-07	ci right 3.239766e-06	k: 2	n:2230000
FIP1L1   2230000 perm   2474 sec   (901 perm/sec)   p_kst 8.968610e-07   p_cons 9.979448e-01   p_joint 4.484305e-06

Joint ci ratio: 1.181921e+00	ci left: 2.140801e-06	ci right 8.209965e-06	k: 10	n:2240000
Cons ci ratio: 1.189162e-04	ci left: 9.978831e-01	ci right 9.980022e-01	k: 2235393	n:2240000
KS ci ratio: 2.263211e+00	ci left: 1.081292e-07	ci right 3.225303e-06	k: 2	n:2240000
FIP1L1   2240000 perm   2495 sec   (898 perm/sec)   p_kst 8.928571e-07   p_cons 9.979433e-01   p_joint 4.464286e-06

Joint ci ratio: 1.181921e+00	ci left: 2.131286e-06	ci right 8.173476e-06	k: 10	n:2250000
Cons ci ratio: 1.186700e-04	ci left: 9.978826e-01	ci right 9.980015e-01	k: 2245371	n:2250000
KS ci ratio: 2.263211e+00	ci left: 1.076486e-07	ci right 3.210969e-06	k: 2	n:2250000
FIP1L1   2250000 perm   2517 sec   (894 perm/sec)   p_kst 8.888889e-07   p_cons 9.979427e-01   p_joint 4.444444e-06

Joint ci ratio: 1.181921e+00	ci left: 2.121855e-06	ci right 8.137311e-06	k: 10	n:2260000
Cons ci ratio: 1.184253e-04	ci left: 9.978821e-01	ci right 9.980007e-01	k: 2255349	n:2260000
KS ci ratio: 2.263211e+00	ci left: 1.071723e-07	ci right 3.196761e-06	k: 2	n:2260000
FIP1L1   2260000 perm   2539 sec   (890 perm/sec)   p_kst 8.849558e-07   p_cons 9.979420e-01   p_joint 4.424779e-06

Joint ci ratio: 1.181921e+00	ci left: 2.112508e-06	ci right 8.101463e-06	k: 10	n:2270000
Cons ci ratio: 1.182328e-04	ci left: 9.978798e-01	ci right 9.979982e-01	k: 2265323	n:2270000
KS ci ratio: 2.263211e+00	ci left: 1.067001e-07	ci right 3.182678e-06	k: 2	n:2270000
FIP1L1   2270000 perm   2559 sec   (887 perm/sec)   p_kst 8.810573e-07   p_cons 9.979396e-01   p_joint 4.405286e-06

Joint ci ratio: 1.181921e+00	ci left: 2.103243e-06	ci right 8.065931e-06	k: 10	n:2280000
Cons ci ratio: 1.179026e-04	ci left: 9.978824e-01	ci right 9.980005e-01	k: 2275308	n:2280000
KS ci ratio: 2.263211e+00	ci left: 1.062322e-07	ci right 3.168719e-06	k: 2	n:2280000
FIP1L1   2280000 perm   2581 sec   (883 perm/sec)   p_kst 8.771930e-07   p_cons 9.979421e-01   p_joint 4.385965e-06

Joint ci ratio: 1.385927e+00	ci left: 1.228980e-06	ci right 6.298101e-06	k: 7	n:2290000
Cons ci ratio: 1.176501e-04	ci left: 9.978824e-01	ci right 9.980002e-01	k: 2285287	n:2290000
KS ci ratio: 2.263211e+00	ci left: 1.057683e-07	ci right 3.154882e-06	k: 2	n:2290000
FIP1L1   2290000 perm   2604 sec   (879 perm/sec)   p_kst 8.733624e-07   p_cons 9.979419e-01   p_joint 3.056769e-06

Joint ci ratio: 1.385927e+00	ci left: 1.223637e-06	ci right 6.270718e-06	k: 7	n:2300000
Cons ci ratio: 1.173620e-04	ci left: 9.978836e-01	ci right 9.980012e-01	k: 2295269	n:2300000
KS ci ratio: 2.263211e+00	ci left: 1.053084e-07	ci right 3.141165e-06	k: 2	n:2300000
FIP1L1   2300000 perm   2625 sec   (876 perm/sec)   p_kst 8.695652e-07   p_cons 9.979430e-01   p_joint 3.043478e-06

Joint ci ratio: 1.385927e+00	ci left: 1.218340e-06	ci right 6.243572e-06	k: 7	n:2310000
Cons ci ratio: 1.169894e-04	ci left: 9.978880e-01	ci right 9.980051e-01	k: 2305258	n:2310000
KS ci ratio: 2.263211e+00	ci left: 1.048525e-07	ci right 3.127567e-06	k: 2	n:2310000
FIP1L1   2310000 perm   2646 sec   (873 perm/sec)   p_kst 8.658009e-07   p_cons 9.979472e-01   p_joint 3.030303e-06

Joint ci ratio: 1.385927e+00	ci left: 1.213088e-06	ci right 6.216660e-06	k: 7	n:2320000
Cons ci ratio: 1.168041e-04	ci left: 9.978857e-01	ci right 9.980027e-01	k: 2315232	n:2320000
KS ci ratio: 2.263211e+00	ci left: 1.044006e-07	ci right 3.114086e-06	k: 2	n:2320000
FIP1L1   2320000 perm   2668 sec   (869 perm/sec)   p_kst 8.620690e-07   p_cons 9.979448e-01   p_joint 3.017241e-06

Joint ci ratio: 1.385927e+00	ci left: 1.207882e-06	ci right 6.189980e-06	k: 7	n:2330000
Cons ci ratio: 1.165586e-04	ci left: 9.978856e-01	ci right 9.980024e-01	k: 2325211	n:2330000
KS ci ratio: 2.263211e+00	ci left: 1.039525e-07	ci right 3.100721e-06	k: 2	n:2330000
FIP1L1   2330000 perm   2690 sec   (866 perm/sec)   p_kst 8.583691e-07   p_cons 9.979446e-01   p_joint 3.004292e-06

Joint ci ratio: 1.385927e+00	ci left: 1.202720e-06	ci right 6.163527e-06	k: 7	n:2340000
Cons ci ratio: 1.163752e-04	ci left: 9.978834e-01	ci right 9.980000e-01	k: 2335185	n:2340000
KS ci ratio: 2.263211e+00	ci left: 1.035083e-07	ci right 3.087470e-06	k: 2	n:2340000
FIP1L1   2340000 perm   2711 sec   (863 perm/sec)   p_kst 8.547009e-07   p_cons 9.979423e-01   p_joint 2.991453e-06

Joint ci ratio: 1.385927e+00	ci left: 1.197602e-06	ci right 6.137299e-06	k: 7	n:2350000
Cons ci ratio: 1.161083e-04	ci left: 9.978842e-01	ci right 9.980005e-01	k: 2345166	n:2350000
KS ci ratio: 2.263211e+00	ci left: 1.030678e-07	ci right 3.074332e-06	k: 2	n:2350000
FIP1L1   2350000 perm   2731 sec   (861 perm/sec)   p_kst 8.510638e-07   p_cons 9.979430e-01   p_joint 2.978723e-06

Joint ci ratio: 1.385927e+00	ci left: 1.192528e-06	ci right 6.111294e-06	k: 7	n:2360000
Cons ci ratio: 1.159508e-04	ci left: 9.978812e-01	ci right 9.979973e-01	k: 2355138	n:2360000
KS ci ratio: 2.263211e+00	ci left: 1.026311e-07	ci right 3.061305e-06	k: 2	n:2360000
FIP1L1   2360000 perm   2751 sec   (858 perm/sec)   p_kst 8.474576e-07   p_cons 9.979398e-01   p_joint 2.966102e-06

Joint ci ratio: 1.385927e+00	ci left: 1.187496e-06	ci right 6.085507e-06	k: 7	n:2370000
Cons ci ratio: 1.157106e-04	ci left: 9.978811e-01	ci right 9.979970e-01	k: 2365117	n:2370000
KS ci ratio: 2.263211e+00	ci left: 1.021980e-07	ci right 3.048388e-06	k: 2	n:2370000
FIP1L1   2370000 perm   2771 sec   (855 perm/sec)   p_kst 8.438819e-07   p_cons 9.979397e-01   p_joint 2.953586e-06

Joint ci ratio: 1.385927e+00	ci left: 1.182506e-06	ci right 6.059938e-06	k: 7	n:2380000
Cons ci ratio: 1.153775e-04	ci left: 9.978845e-01	ci right 9.980000e-01	k: 2375104	n:2380000
KS ci ratio: 2.263211e+00	ci left: 1.017686e-07	ci right 3.035580e-06	k: 2	n:2380000
FIP1L1   2380000 perm   2796 sec   (851 perm/sec)   p_kst 8.403361e-07   p_cons 9.979429e-01   p_joint 2.941176e-06

Joint ci ratio: 1.385927e+00	ci left: 1.177559e-06	ci right 6.034583e-06	k: 7	n:2390000
Cons ci ratio: 1.151408e-04	ci left: 9.978844e-01	ci right 9.979997e-01	k: 2385083	n:2390000
KS ci ratio: 2.263211e+00	ci left: 1.013428e-07	ci right 3.022879e-06	k: 2	n:2390000
FIP1L1   2390000 perm   2818 sec   (848 perm/sec)   p_kst 8.368201e-07   p_cons 9.979427e-01   p_joint 2.928870e-06

Joint ci ratio: 1.385927e+00	ci left: 1.172652e-06	ci right 6.009439e-06	k: 7	n:2400000
Cons ci ratio: 1.148590e-04	ci left: 9.978860e-01	ci right 9.980011e-01	k: 2395066	n:2400000
KS ci ratio: 2.263211e+00	ci left: 1.009205e-07	ci right 3.010283e-06	k: 2	n:2400000
FIP1L1   2400000 perm   2839 sec   (845 perm/sec)   p_kst 8.333333e-07   p_cons 9.979442e-01   p_joint 2.916667e-06

Joint ci ratio: 1.385927e+00	ci left: 1.167786e-06	ci right 5.984503e-06	k: 7	n:2410000
Cons ci ratio: 1.145212e-04	ci left: 9.978898e-01	ci right 9.980045e-01	k: 2405054	n:2410000
KS ci ratio: 2.263211e+00	ci left: 1.005018e-07	ci right 2.997792e-06	k: 2	n:2410000
FIP1L1   2410000 perm   2860 sec   (843 perm/sec)   p_kst 8.298755e-07   p_cons 9.979477e-01   p_joint 2.904564e-06

Joint ci ratio: 1.385927e+00	ci left: 1.162961e-06	ci right 5.959774e-06	k: 7	n:2420000
Cons ci ratio: 1.143128e-04	ci left: 9.978889e-01	ci right 9.980033e-01	k: 2415031	n:2420000
KS ci ratio: 2.263211e+00	ci left: 1.000865e-07	ci right 2.985405e-06	k: 2	n:2420000
FIP1L1   2420000 perm   2880 sec   (840 perm/sec)   p_kst 8.264463e-07   p_cons 9.979467e-01   p_joint 2.892562e-06

Joint ci ratio: 1.385927e+00	ci left: 1.158175e-06	ci right 5.935248e-06	k: 7	n:2430000
Cons ci ratio: 1.140597e-04	ci left: 9.978896e-01	ci right 9.980038e-01	k: 2425012	n:2430000
KS ci ratio: 2.263211e+00	ci left: 9.967462e-08	ci right 2.973119e-06	k: 2	n:2430000
FIP1L1   2430000 perm   2901 sec   (838 perm/sec)   p_kst 8.230453e-07   p_cons 9.979473e-01   p_joint 2.880658e-06

Joint ci ratio: 1.385927e+00	ci left: 1.153428e-06	ci right 5.910924e-06	k: 7	n:2440000
Cons ci ratio: 1.138311e-04	ci left: 9.978895e-01	ci right 9.980035e-01	k: 2434991	n:2440000
KS ci ratio: 2.263211e+00	ci left: 9.926611e-08	ci right 2.960934e-06	k: 2	n:2440000
FIP1L1   2440000 perm   2922 sec   (835 perm/sec)   p_kst 8.196721e-07   p_cons 9.979471e-01   p_joint 2.868852e-06

Joint ci ratio: 1.385927e+00	ci left: 1.148720e-06	ci right 5.886797e-06	k: 7	n:2450000
Cons ci ratio: 1.135925e-04	ci left: 9.978899e-01	ci right 9.980036e-01	k: 2444971	n:2450000
KS ci ratio: 2.263211e+00	ci left: 9.886095e-08	ci right 2.948849e-06	k: 2	n:2450000
FIP1L1   2450000 perm   2943 sec   (833 perm/sec)   p_kst 8.163265e-07   p_cons 9.979473e-01   p_joint 2.857143e-06

Joint ci ratio: 1.385927e+00	ci left: 1.144051e-06	ci right 5.862867e-06	k: 7	n:2460000
Cons ci ratio: 1.134004e-04	ci left: 9.978886e-01	ci right 9.980021e-01	k: 2454947	n:2460000
KS ci ratio: 2.263211e+00	ci left: 9.845907e-08	ci right 2.936862e-06	k: 2	n:2460000
FIP1L1   2460000 perm   2964 sec   (830 perm/sec)   p_kst 8.130081e-07   p_cons 9.979459e-01   p_joint 2.845528e-06

Joint ci ratio: 1.385927e+00	ci left: 1.139419e-06	ci right 5.839131e-06	k: 7	n:2470000
Cons ci ratio: 1.130639e-04	ci left: 9.978926e-01	ci right 9.980058e-01	k: 2464936	n:2470000
KS ci ratio: 2.263211e+00	ci left: 9.806045e-08	ci right 2.924972e-06	k: 2	n:2470000
FIP1L1   2470000 perm   2985 sec   (828 perm/sec)   p_kst 8.097166e-07   p_cons 9.979498e-01   p_joint 2.834008e-06

Joint ci ratio: 1.385927e+00	ci left: 1.134825e-06	ci right 5.815586e-06	k: 7	n:2480000
Cons ci ratio: 1.128524e-04	ci left: 9.978921e-01	ci right 9.980051e-01	k: 2474914	n:2480000
KS ci ratio: 2.263211e+00	ci left: 9.766505e-08	ci right 2.913177e-06	k: 2	n:2480000
FIP1L1   2480000 perm   3005 sec   (825 perm/sec)   p_kst 8.064516e-07   p_cons 9.979492e-01   p_joint 2.822581e-06

Joint ci ratio: 1.385927e+00	ci left: 1.130267e-06	ci right 5.792230e-06	k: 7	n:2490000
Cons ci ratio: 1.125757e-04	ci left: 9.978941e-01	ci right 9.980068e-01	k: 2484898	n:2490000
KS ci ratio: 2.263211e+00	ci left: 9.727282e-08	ci right 2.901478e-06	k: 2	n:2490000
FIP1L1   2490000 perm   3026 sec   (823 perm/sec)   p_kst 8.032129e-07   p_cons 9.979510e-01   p_joint 2.811245e-06

Joint ci ratio: 1.306664e+00	ci left: 1.381534e-06	ci right 6.305266e-06	k: 8	n:2500000
Cons ci ratio: 1.123668e-04	ci left: 9.978936e-01	ci right 9.980061e-01	k: 2494876	n:2500000
KS ci ratio: 1.959998e+00	ci left: 2.474689e-07	ci right 3.506905e-06	k: 3	n:2500000
FIP1L1   2500000 perm   3047 sec   (820 perm/sec)   p_kst 1.200000e-06   p_cons 9.979504e-01   p_joint 3.200000e-06

Joint ci ratio: 1.306664e+00	ci left: 1.376030e-06	ci right 6.280145e-06	k: 8	n:2510000
Cons ci ratio: 1.120718e-04	ci left: 9.978963e-01	ci right 9.980085e-01	k: 2504862	n:2510000
KS ci ratio: 1.959998e+00	ci left: 2.464830e-07	ci right 3.492933e-06	k: 3	n:2510000
FIP1L1   2510000 perm   3068 sec   (818 perm/sec)   p_kst 1.195219e-06   p_cons 9.979530e-01   p_joint 3.187251e-06

Joint ci ratio: 1.306664e+00	ci left: 1.370569e-06	ci right 6.255224e-06	k: 8	n:2520000
Cons ci ratio: 1.119092e-04	ci left: 9.978942e-01	ci right 9.980063e-01	k: 2514836	n:2520000
KS ci ratio: 1.959998e+00	ci left: 2.455049e-07	ci right 3.479073e-06	k: 3	n:2520000
FIP1L1   2520000 perm   3089 sec   (816 perm/sec)   p_kst 1.190476e-06   p_cons 9.979508e-01   p_joint 3.174603e-06

Joint ci ratio: 1.306664e+00	ci left: 1.365152e-06	ci right 6.230500e-06	k: 8	n:2530000
Cons ci ratio: 1.117472e-04	ci left: 9.978921e-01	ci right 9.980040e-01	k: 2524810	n:2530000
KS ci ratio: 1.959998e+00	ci left: 2.445345e-07	ci right 3.465321e-06	k: 3	n:2530000
FIP1L1   2530000 perm   3110 sec   (813 perm/sec)   p_kst 1.185771e-06   p_cons 9.979486e-01   p_joint 3.162055e-06

Joint ci ratio: 1.306664e+00	ci left: 1.359777e-06	ci right 6.205971e-06	k: 8	n:2540000
Cons ci ratio: 1.114356e-04	ci left: 9.978956e-01	ci right 9.980072e-01	k: 2534798	n:2540000
KS ci ratio: 1.959998e+00	ci left: 2.435718e-07	ci right 3.451678e-06	k: 3	n:2540000
FIP1L1   2540000 perm   3132 sec   (811 perm/sec)   p_kst 1.181102e-06   p_cons 9.979520e-01   p_joint 3.149606e-06

Joint ci ratio: 1.306664e+00	ci left: 1.354445e-06	ci right 6.181633e-06	k: 8	n:2550000
Cons ci ratio: 1.112224e-04	ci left: 9.978955e-01	ci right 9.980069e-01	k: 2544777	n:2550000
KS ci ratio: 1.959998e+00	ci left: 2.426166e-07	ci right 3.438142e-06	k: 3	n:2550000
FIP1L1   2550000 perm   3154 sec   (809 perm/sec)   p_kst 1.176471e-06   p_cons 9.979518e-01   p_joint 3.137255e-06

Joint ci ratio: 1.306664e+00	ci left: 1.349154e-06	ci right 6.157486e-06	k: 8	n:2560000
Cons ci ratio: 1.110528e-04	ci left: 9.978938e-01	ci right 9.980050e-01	k: 2554752	n:2560000
KS ci ratio: 1.959998e+00	ci left: 2.416689e-07	ci right 3.424712e-06	k: 3	n:2560000
FIP1L1   2560000 perm   3175 sec   (806 perm/sec)   p_kst 1.171875e-06   p_cons 9.979500e-01   p_joint 3.125000e-06

Joint ci ratio: 1.306664e+00	ci left: 1.343904e-06	ci right 6.133527e-06	k: 8	n:2570000
Cons ci ratio: 1.108102e-04	ci left: 9.978949e-01	ci right 9.980059e-01	k: 2564734	n:2570000
KS ci ratio: 1.959998e+00	ci left: 2.407285e-07	ci right 3.411386e-06	k: 3	n:2570000
FIP1L1   2570000 perm   3198 sec   (804 perm/sec)   p_kst 1.167315e-06   p_cons 9.979510e-01   p_joint 3.112840e-06

Joint ci ratio: 1.306664e+00	ci left: 1.338696e-06	ci right 6.109754e-06	k: 8	n:2580000
Cons ci ratio: 1.105796e-04	ci left: 9.978956e-01	ci right 9.980064e-01	k: 2574715	n:2580000
KS ci ratio: 1.959998e+00	ci left: 2.397955e-07	ci right 3.398164e-06	k: 3	n:2580000
FIP1L1   2580000 perm   3220 sec   (801 perm/sec)   p_kst 1.162791e-06   p_cons 9.979516e-01   p_joint 3.100775e-06

Joint ci ratio: 1.306664e+00	ci left: 1.333527e-06	ci right 6.086164e-06	k: 8	n:2590000
Cons ci ratio: 1.103712e-04	ci left: 9.978955e-01	ci right 9.980061e-01	k: 2584694	n:2590000
KS ci ratio: 1.959998e+00	ci left: 2.388696e-07	ci right 3.385044e-06	k: 3	n:2590000
FIP1L1   2590000 perm   3242 sec   (799 perm/sec)   p_kst 1.158301e-06   p_cons 9.979514e-01   p_joint 3.088803e-06

Joint ci ratio: 1.306664e+00	ci left: 1.328398e-06	ci right 6.062756e-06	k: 8	n:2600000
Cons ci ratio: 1.102676e-04	ci left: 9.978915e-01	ci right 9.980020e-01	k: 2594663	n:2600000
KS ci ratio: 1.959998e+00	ci left: 2.379509e-07	ci right 3.372024e-06	k: 3	n:2600000
FIP1L1   2600000 perm   3264 sec   (797 perm/sec)   p_kst 1.153846e-06   p_cons 9.979473e-01   p_joint 3.076923e-06

Joint ci ratio: 1.306664e+00	ci left: 1.323308e-06	ci right 6.039527e-06	k: 8	n:2610000
Cons ci ratio: 1.100713e-04	ci left: 9.978911e-01	ci right 9.980013e-01	k: 2604641	n:2610000
KS ci ratio: 1.959998e+00	ci left: 2.370392e-07	ci right 3.359105e-06	k: 3	n:2610000
FIP1L1   2610000 perm   3286 sec   (794 perm/sec)   p_kst 1.149425e-06   p_cons 9.979467e-01   p_joint 3.065134e-06

Joint ci ratio: 1.306664e+00	ci left: 1.318257e-06	ci right 6.016476e-06	k: 8	n:2620000
Cons ci ratio: 1.098248e-04	ci left: 9.978926e-01	ci right 9.980025e-01	k: 2614624	n:2620000
KS ci ratio: 1.959998e+00	ci left: 2.361345e-07	ci right 3.346284e-06	k: 3	n:2620000
FIP1L1   2620000 perm   3309 sec   (792 perm/sec)   p_kst 1.145038e-06   p_cons 9.979481e-01   p_joint 3.053435e-06

Joint ci ratio: 1.306664e+00	ci left: 1.313245e-06	ci right 5.993599e-06	k: 8	n:2630000
Cons ci ratio: 1.096919e-04	ci left: 9.978898e-01	ci right 9.979996e-01	k: 2624596	n:2630000
KS ci ratio: 1.959998e+00	ci left: 2.352366e-07	ci right 3.333560e-06	k: 3	n:2630000
FIP1L1   2630000 perm   3332 sec   (789 perm/sec)   p_kst 1.140684e-06   p_cons 9.979452e-01   p_joint 3.041825e-06

Joint ci ratio: 1.306664e+00	ci left: 1.308271e-06	ci right 5.970896e-06	k: 8	n:2640000
Cons ci ratio: 1.093873e-04	ci left: 9.978935e-01	ci right 9.980031e-01	k: 2634585	n:2640000
KS ci ratio: 1.959998e+00	ci left: 2.343456e-07	ci right 3.320933e-06	k: 3	n:2640000
FIP1L1   2640000 perm   3355 sec   (787 perm/sec)   p_kst 1.136364e-06   p_cons 9.979489e-01   p_joint 3.030303e-06

Joint ci ratio: 1.306664e+00	ci left: 1.303334e-06	ci right 5.948365e-06	k: 8	n:2650000
Cons ci ratio: 1.091756e-04	ci left: 9.978939e-01	ci right 9.980032e-01	k: 2644565	n:2650000
KS ci ratio: 1.959998e+00	ci left: 2.334612e-07	ci right 3.308401e-06	k: 3	n:2650000
FIP1L1   2650000 perm   3378 sec   (785 perm/sec)   p_kst 1.132075e-06   p_cons 9.979491e-01   p_joint 3.018868e-06

Joint ci ratio: 1.385927e+00	ci left: 1.058032e-06	ci right 5.422051e-06	k: 7	n:2660000
Cons ci ratio: 1.089550e-04	ci left: 9.978945e-01	ci right 9.980036e-01	k: 2654546	n:2660000
KS ci ratio: 1.959998e+00	ci left: 2.325836e-07	ci right 3.295964e-06	k: 3	n:2660000
FIP1L1   2660000 perm   3401 sec   (782 perm/sec)   p_kst 1.127820e-06   p_cons 9.979496e-01   p_joint 2.631579e-06

Joint ci ratio: 1.385927e+00	ci left: 1.054069e-06	ci right 5.401744e-06	k: 7	n:2670000
Cons ci ratio: 1.088054e-04	ci left: 9.978925e-01	ci right 9.980015e-01	k: 2664520	n:2670000
KS ci ratio: 1.959998e+00	ci left: 2.317125e-07	ci right 3.283619e-06	k: 3	n:2670000
FIP1L1   2670000 perm   3424 sec   (780 perm/sec)   p_kst 1.123596e-06   p_cons 9.979476e-01   p_joint 2.621723e-06

Joint ci ratio: 1.385927e+00	ci left: 1.050136e-06	ci right 5.381588e-06	k: 7	n:2680000
Cons ci ratio: 1.085673e-04	ci left: 9.978940e-01	ci right 9.980027e-01	k: 2674503	n:2680000
KS ci ratio: 1.959998e+00	ci left: 2.308479e-07	ci right 3.271367e-06	k: 3	n:2680000
FIP1L1   2680000 perm   3448 sec   (777 perm/sec)   p_kst 1.119403e-06   p_cons 9.979489e-01   p_joint 2.611940e-06

Joint ci ratio: 1.385927e+00	ci left: 1.046232e-06	ci right 5.361582e-06	k: 7	n:2690000
Cons ci ratio: 1.083308e-04	ci left: 9.978954e-01	ci right 9.980039e-01	k: 2684486	n:2690000
KS ci ratio: 1.959998e+00	ci left: 2.299897e-07	ci right 3.259206e-06	k: 3	n:2690000
FIP1L1   2690000 perm   3472 sec   (775 perm/sec)   p_kst 1.115242e-06   p_cons 9.979502e-01   p_joint 2.602230e-06

Joint ci ratio: 1.385927e+00	ci left: 1.042357e-06	ci right 5.341724e-06	k: 7	n:2700000
Cons ci ratio: 1.081544e-04	ci left: 9.978946e-01	ci right 9.980029e-01	k: 2694463	n:2700000
KS ci ratio: 1.959998e+00	ci left: 2.291379e-07	ci right 3.247135e-06	k: 3	n:2700000
FIP1L1   2700000 perm   3495 sec   (773 perm/sec)   p_kst 1.111111e-06   p_cons 9.979493e-01   p_joint 2.592593e-06

Joint ci ratio: 1.385927e+00	ci left: 1.038511e-06	ci right 5.322013e-06	k: 7	n:2710000
Cons ci ratio: 1.079789e-04	ci left: 9.978937e-01	ci right 9.980019e-01	k: 2704440	n:2710000
KS ci ratio: 1.959998e+00	ci left: 2.282924e-07	ci right 3.235153e-06	k: 3	n:2710000
FIP1L1   2710000 perm   3519 sec   (770 perm/sec)   p_kst 1.107011e-06   p_cons 9.979483e-01   p_joint 2.583026e-06

Joint ci ratio: 1.385927e+00	ci left: 1.034693e-06	ci right 5.302447e-06	k: 7	n:2720000
Cons ci ratio: 1.077365e-04	ci left: 9.978955e-01	ci right 9.980034e-01	k: 2714424	n:2720000
KS ci ratio: 1.959998e+00	ci left: 2.274530e-07	ci right 3.223259e-06	k: 3	n:2720000
FIP1L1   2720000 perm   3542 sec   (768 perm/sec)   p_kst 1.102941e-06   p_cons 9.979500e-01   p_joint 2.573529e-06

Joint ci ratio: 1.385927e+00	ci left: 1.030903e-06	ci right 5.283024e-06	k: 7	n:2730000
Cons ci ratio: 1.075149e-04	ci left: 9.978966e-01	ci right 9.980042e-01	k: 2724406	n:2730000
KS ci ratio: 1.959998e+00	ci left: 2.266199e-07	ci right 3.211452e-06	k: 3	n:2730000
FIP1L1   2730000 perm   3567 sec   (765 perm/sec)   p_kst 1.098901e-06   p_cons 9.979509e-01   p_joint 2.564103e-06

Joint ci ratio: 1.385927e+00	ci left: 1.027140e-06	ci right 5.263743e-06	k: 7	n:2740000
Cons ci ratio: 1.074190e-04	ci left: 9.978928e-01	ci right 9.980003e-01	k: 2734375	n:2740000
KS ci ratio: 1.959998e+00	ci left: 2.257928e-07	ci right 3.199731e-06	k: 3	n:2740000
FIP1L1   2740000 perm   3591 sec   (763 perm/sec)   p_kst 1.094891e-06   p_cons 9.979471e-01   p_joint 2.554745e-06

Joint ci ratio: 1.385927e+00	ci left: 1.023405e-06	ci right 5.244602e-06	k: 7	n:2750000
Cons ci ratio: 1.072565e-04	ci left: 9.978916e-01	ci right 9.979990e-01	k: 2744351	n:2750000
KS ci ratio: 1.959998e+00	ci left: 2.249717e-07	ci right 3.188096e-06	k: 3	n:2750000
FIP1L1   2750000 perm   3615 sec   (761 perm/sec)   p_kst 1.090909e-06   p_cons 9.979458e-01   p_joint 2.545455e-06

Joint ci ratio: 1.385927e+00	ci left: 1.019697e-06	ci right 5.225600e-06	k: 7	n:2760000
Cons ci ratio: 1.071515e-04	ci left: 9.978882e-01	ci right 9.979955e-01	k: 2754321	n:2760000
KS ci ratio: 1.959998e+00	ci left: 2.241566e-07	ci right 3.176545e-06	k: 3	n:2760000
FIP1L1   2760000 perm   3639 sec   (758 perm/sec)   p_kst 1.086957e-06   p_cons 9.979424e-01   p_joint 2.536232e-06

Joint ci ratio: 1.385927e+00	ci left: 1.016016e-06	ci right 5.206735e-06	k: 7	n:2770000
Cons ci ratio: 1.069712e-04	ci left: 9.978878e-01	ci right 9.979949e-01	k: 2764299	n:2770000
KS ci ratio: 1.959998e+00	ci left: 2.233474e-07	ci right 3.165077e-06	k: 3	n:2770000
FIP1L1   2770000 perm   3665 sec   (756 perm/sec)   p_kst 1.083032e-06   p_cons 9.979419e-01   p_joint 2.527076e-06

Joint ci ratio: 1.385927e+00	ci left: 1.012361e-06	ci right 5.188006e-06	k: 7	n:2780000
Cons ci ratio: 1.068386e-04	ci left: 9.978856e-01	ci right 9.979925e-01	k: 2774272	n:2780000
KS ci ratio: 1.959998e+00	ci left: 2.225440e-07	ci right 3.153692e-06	k: 3	n:2780000
FIP1L1   2780000 perm   3688 sec   (754 perm/sec)   p_kst 1.079137e-06   p_cons 9.979396e-01   p_joint 2.517986e-06

Joint ci ratio: 1.385927e+00	ci left: 1.008733e-06	ci right 5.169411e-06	k: 7	n:2790000
Cons ci ratio: 1.067435e-04	ci left: 9.978819e-01	ci right 9.979888e-01	k: 2784241	n:2790000
KS ci ratio: 1.959998e+00	ci left: 2.217463e-07	ci right 3.142389e-06	k: 3	n:2790000
FIP1L1   2790000 perm   3712 sec   (752 perm/sec)   p_kst 1.075269e-06   p_cons 9.979358e-01   p_joint 2.508961e-06

Joint ci ratio: 1.385927e+00	ci left: 1.005130e-06	ci right 5.150949e-06	k: 7	n:2800000
Cons ci ratio: 1.065191e-04	ci left: 9.978833e-01	ci right 9.979900e-01	k: 2794224	n:2800000
KS ci ratio: 1.959998e+00	ci left: 2.209544e-07	ci right 3.131166e-06	k: 3	n:2800000
FIP1L1   2800000 perm   3736 sec   (749 perm/sec)   p_kst 1.071429e-06   p_cons 9.979371e-01   p_joint 2.500000e-06

Joint ci ratio: 1.306664e+00	ci left: 1.229123e-06	ci right 5.609668e-06	k: 8	n:2810000
Cons ci ratio: 1.062960e-04	ci left: 9.978847e-01	ci right 9.979911e-01	k: 2804207	n:2810000
KS ci ratio: 1.959998e+00	ci left: 2.201681e-07	ci right 3.120023e-06	k: 3	n:2810000
FIP1L1   2810000 perm   3761 sec   (747 perm/sec)   p_kst 1.067616e-06   p_cons 9.979384e-01   p_joint 2.846975e-06

Joint ci ratio: 1.306664e+00	ci left: 1.224764e-06	ci right 5.589776e-06	k: 8	n:2820000
Cons ci ratio: 1.061748e-04	ci left: 9.978822e-01	ci right 9.979885e-01	k: 2814179	n:2820000
KS ci ratio: 1.959998e+00	ci left: 2.193873e-07	ci right 3.108959e-06	k: 3	n:2820000
FIP1L1   2820000 perm   3786 sec   (745 perm/sec)   p_kst 1.063830e-06   p_cons 9.979358e-01   p_joint 2.836879e-06

Joint ci ratio: 1.306664e+00	ci left: 1.220436e-06	ci right 5.570024e-06	k: 8	n:2830000
Cons ci ratio: 1.060084e-04	ci left: 9.978814e-01	ci right 9.979875e-01	k: 2824156	n:2830000
KS ci ratio: 1.959998e+00	ci left: 2.186121e-07	ci right 3.097973e-06	k: 3	n:2830000
FIP1L1   2830000 perm   3811 sec   (743 perm/sec)   p_kst 1.060071e-06   p_cons 9.979350e-01   p_joint 2.826855e-06

Joint ci ratio: 1.306664e+00	ci left: 1.216139e-06	ci right 5.550411e-06	k: 8	n:2840000
Cons ci ratio: 1.058429e-04	ci left: 9.978807e-01	ci right 9.979866e-01	k: 2834133	n:2840000
KS ci ratio: 1.959998e+00	ci left: 2.178423e-07	ci right 3.087065e-06	k: 3	n:2840000
FIP1L1   2840000 perm   3838 sec   (740 perm/sec)   p_kst 1.056338e-06   p_cons 9.979342e-01   p_joint 2.816901e-06

Joint ci ratio: 1.306664e+00	ci left: 1.211872e-06	ci right 5.530936e-06	k: 8	n:2850000
Cons ci ratio: 1.057140e-04	ci left: 9.978785e-01	ci right 9.979843e-01	k: 2844106	n:2850000
KS ci ratio: 1.959998e+00	ci left: 2.170780e-07	ci right 3.076233e-06	k: 3	n:2850000
FIP1L1   2850000 perm   3862 sec   (738 perm/sec)   p_kst 1.052632e-06   p_cons 9.979319e-01   p_joint 2.807018e-06

Joint ci ratio: 1.306664e+00	ci left: 1.207634e-06	ci right 5.511597e-06	k: 8	n:2860000
Cons ci ratio: 1.054961e-04	ci left: 9.978799e-01	ci right 9.979855e-01	k: 2854089	n:2860000
KS ci ratio: 1.959998e+00	ci left: 2.163190e-07	ci right 3.065477e-06	k: 3	n:2860000
FIP1L1   2860000 perm   3887 sec   (736 perm/sec)   p_kst 1.048951e-06   p_cons 9.979332e-01   p_joint 2.797203e-06

Joint ci ratio: 1.306664e+00	ci left: 1.203427e-06	ci right 5.492393e-06	k: 8	n:2870000
Cons ci ratio: 1.052972e-04	ci left: 9.978806e-01	ci right 9.979860e-01	k: 2864070	n:2870000
KS ci ratio: 1.959998e+00	ci left: 2.155653e-07	ci right 3.054796e-06	k: 3	n:2870000
FIP1L1   2870000 perm   3913 sec   (734 perm/sec)   p_kst 1.045296e-06   p_cons 9.979338e-01   p_joint 2.787456e-06

Joint ci ratio: 1.306664e+00	ci left: 1.199248e-06	ci right 5.473322e-06	k: 8	n:2880000
Cons ci ratio: 1.050818e-04	ci left: 9.978820e-01	ci right 9.979872e-01	k: 2874053	n:2880000
KS ci ratio: 1.959998e+00	ci left: 2.148168e-07	ci right 3.044189e-06	k: 3	n:2880000
FIP1L1   2880000 perm   3939 sec   (731 perm/sec)   p_kst 1.041667e-06   p_cons 9.979351e-01   p_joint 2.777778e-06

Joint ci ratio: 1.306664e+00	ci left: 1.195098e-06	ci right 5.454383e-06	k: 8	n:2890000
Cons ci ratio: 1.049117e-04	ci left: 9.978816e-01	ci right 9.979866e-01	k: 2884031	n:2890000
KS ci ratio: 1.959998e+00	ci left: 2.140735e-07	ci right 3.033655e-06	k: 3	n:2890000
FIP1L1   2890000 perm   3966 sec   (729 perm/sec)   p_kst 1.038062e-06   p_cons 9.979346e-01   p_joint 2.768166e-06

Joint ci ratio: 1.306664e+00	ci left: 1.190977e-06	ci right 5.435575e-06	k: 8	n:2900000
Cons ci ratio: 1.047249e-04	ci left: 9.978819e-01	ci right 9.979868e-01	k: 2894011	n:2900000
KS ci ratio: 1.959998e+00	ci left: 2.133353e-07	ci right 3.023195e-06	k: 3	n:2900000
FIP1L1   2900000 perm   3995 sec   (726 perm/sec)   p_kst 1.034483e-06   p_cons 9.979348e-01   p_joint 2.758621e-06

Joint ci ratio: 1.306664e+00	ci left: 1.186885e-06	ci right 5.416896e-06	k: 8	n:2910000
Cons ci ratio: 1.045827e-04	ci left: 9.978805e-01	ci right 9.979852e-01	k: 2903986	n:2910000
KS ci ratio: 1.959998e+00	ci left: 2.126022e-07	ci right 3.012806e-06	k: 3	n:2910000
FIP1L1   2910000 perm   4021 sec   (724 perm/sec)   p_kst 1.030928e-06   p_cons 9.979333e-01   p_joint 2.749141e-06

Joint ci ratio: 1.306664e+00	ci left: 1.182820e-06	ci right 5.398345e-06	k: 8	n:2920000
Cons ci ratio: 1.045189e-04	ci left: 9.978760e-01	ci right 9.979806e-01	k: 2913952	n:2920000
KS ci ratio: 1.959998e+00	ci left: 2.118741e-07	ci right 3.002488e-06	k: 3	n:2920000
FIP1L1   2920000 perm   4047 sec   (721 perm/sec)   p_kst 1.027397e-06   p_cons 9.979288e-01   p_joint 2.739726e-06

Joint ci ratio: 1.306664e+00	ci left: 1.178783e-06	ci right 5.379921e-06	k: 8	n:2930000
Cons ci ratio: 1.043687e-04	ci left: 9.978749e-01	ci right 9.979794e-01	k: 2923928	n:2930000
KS ci ratio: 1.959998e+00	ci left: 2.111509e-07	ci right 2.992240e-06	k: 3	n:2930000
FIP1L1   2930000 perm   4074 sec   (719 perm/sec)   p_kst 1.023891e-06   p_cons 9.979276e-01   p_joint 2.730375e-06

Joint ci ratio: 1.306664e+00	ci left: 1.174774e-06	ci right 5.361622e-06	k: 8	n:2940000
Cons ci ratio: 1.041848e-04	ci left: 9.978752e-01	ci right 9.979795e-01	k: 2933908	n:2940000
KS ci ratio: 1.959998e+00	ci left: 2.104327e-07	ci right 2.982063e-06	k: 3	n:2940000
FIP1L1   2940000 perm   4099 sec   (717 perm/sec)   p_kst 1.020408e-06   p_cons 9.979279e-01   p_joint 2.721088e-06

Joint ci ratio: 1.306664e+00	ci left: 1.170791e-06	ci right 5.343447e-06	k: 8	n:2950000
Cons ci ratio: 1.039849e-04	ci left: 9.978763e-01	ci right 9.979804e-01	k: 2943890	n:2950000
KS ci ratio: 1.959998e+00	ci left: 2.097194e-07	ci right 2.971954e-06	k: 3	n:2950000
FIP1L1   2950000 perm   4125 sec   (715 perm/sec)   p_kst 1.016949e-06   p_cons 9.979288e-01   p_joint 2.711864e-06

Joint ci ratio: 1.306664e+00	ci left: 1.166836e-06	ci right 5.325395e-06	k: 8	n:2960000
Cons ci ratio: 1.037775e-04	ci left: 9.978776e-01	ci right 9.979815e-01	k: 2953873	n:2960000
KS ci ratio: 1.959998e+00	ci left: 2.090109e-07	ci right 2.961914e-06	k: 3	n:2960000
FIP1L1   2960000 perm   4151 sec   (713 perm/sec)   p_kst 1.013514e-06   p_cons 9.979301e-01   p_joint 2.702703e-06

Joint ci ratio: 1.306664e+00	ci left: 1.162907e-06	ci right 5.307464e-06	k: 8	n:2970000
Cons ci ratio: 1.036811e-04	ci left: 9.978746e-01	ci right 9.979783e-01	k: 2963843	n:2970000
KS ci ratio: 1.959998e+00	ci left: 2.083072e-07	ci right 2.951941e-06	k: 3	n:2970000
FIP1L1   2970000 perm   4180 sec   (711 perm/sec)   p_kst 1.010101e-06   p_cons 9.979269e-01   p_joint 2.693603e-06

Joint ci ratio: 1.306664e+00	ci left: 1.159005e-06	ci right 5.289654e-06	k: 8	n:2980000
Cons ci ratio: 1.035261e-04	ci left: 9.978739e-01	ci right 9.979775e-01	k: 2973820	n:2980000
KS ci ratio: 1.959998e+00	ci left: 2.076081e-07	ci right 2.942035e-06	k: 3	n:2980000
FIP1L1   2980000 perm   4208 sec   (708 perm/sec)   p_kst 1.006711e-06   p_cons 9.979262e-01   p_joint 2.684564e-06

Joint ci ratio: 1.306664e+00	ci left: 1.155129e-06	ci right 5.271963e-06	k: 8	n:2990000
Cons ci ratio: 1.033549e-04	ci left: 9.978739e-01	ci right 9.979773e-01	k: 2983799	n:2990000
KS ci ratio: 1.959998e+00	ci left: 2.069138e-07	ci right 2.932196e-06	k: 3	n:2990000
FIP1L1   2990000 perm   4236 sec   (706 perm/sec)   p_kst 1.003344e-06   p_cons 9.979261e-01   p_joint 2.675585e-06

Joint ci ratio: 1.306664e+00	ci left: 1.151278e-06	ci right 5.254390e-06	k: 8	n:3000000
Cons ci ratio: 1.032511e-04	ci left: 9.978712e-01	ci right 9.979745e-01	k: 2993770	n:3000000
KS ci ratio: 1.959998e+00	ci left: 2.062241e-07	ci right 2.922422e-06	k: 3	n:3000000
FIP1L1   3000000 perm   4262 sec   (704 perm/sec)   p_kst 1.000000e-06   p_cons 9.979233e-01   p_joint 2.666667e-06

Joint ci ratio: 1.306664e+00	ci left: 1.147453e-06	ci right 5.236933e-06	k: 8	n:3010000
Cons ci ratio: 1.030731e-04	ci left: 9.978715e-01	ci right 9.979747e-01	k: 3003750	n:3010000
KS ci ratio: 1.959998e+00	ci left: 2.055390e-07	ci right 2.912713e-06	k: 3	n:3010000
FIP1L1   3010000 perm   4288 sec   (702 perm/sec)   p_kst 9.966777e-07   p_cons 9.979236e-01   p_joint 2.657807e-06

Joint ci ratio: 1.306665e+00	ci left: 1.143654e-06	ci right 5.219592e-06	k: 8	n:3020000
Cons ci ratio: 1.028796e-04	ci left: 9.978725e-01	ci right 9.979755e-01	k: 3013732	n:3020000
KS ci ratio: 1.959998e+00	ci left: 2.048584e-07	ci right 2.903068e-06	k: 3	n:3020000
FIP1L1   3020000 perm   4313 sec   (700 perm/sec)   p_kst 9.933775e-07   p_cons 9.979245e-01   p_joint 2.649007e-06

Joint ci ratio: 1.306665e+00	ci left: 1.139879e-06	ci right 5.202366e-06	k: 8	n:3030000
Cons ci ratio: 1.026543e-04	ci left: 9.978749e-01	ci right 9.979776e-01	k: 3023718	n:3030000
KS ci ratio: 1.959998e+00	ci left: 2.041823e-07	ci right 2.893487e-06	k: 3	n:3030000
FIP1L1   3030000 perm   4341 sec   (698 perm/sec)   p_kst 9.900990e-07   p_cons 9.979267e-01   p_joint 2.640264e-06

Joint ci ratio: 1.306665e+00	ci left: 1.136130e-06	ci right 5.185253e-06	k: 8	n:3040000
Cons ci ratio: 1.024875e-04	ci left: 9.978749e-01	ci right 9.979775e-01	k: 3033697	n:3040000
KS ci ratio: 1.959998e+00	ci left: 2.035106e-07	ci right 2.883969e-06	k: 3	n:3040000
FIP1L1   3040000 perm   4370 sec   (696 perm/sec)   p_kst 9.868421e-07   p_cons 9.979266e-01   p_joint 2.631579e-06

Joint ci ratio: 1.306665e+00	ci left: 1.132405e-06	ci right 5.168252e-06	k: 8	n:3050000
Cons ci ratio: 1.023053e-04	ci left: 9.978755e-01	ci right 9.979779e-01	k: 3043678	n:3050000
KS ci ratio: 1.959998e+00	ci left: 2.028434e-07	ci right 2.874513e-06	k: 3	n:3050000
FIP1L1   3050000 perm   4401 sec   (693 perm/sec)   p_kst 9.836066e-07   p_cons 9.979272e-01   p_joint 2.622951e-06

Joint ci ratio: 1.306665e+00	ci left: 1.128704e-06	ci right 5.151362e-06	k: 8	n:3060000
Cons ci ratio: 1.021321e-04	ci left: 9.978759e-01	ci right 9.979781e-01	k: 3053658	n:3060000
KS ci ratio: 1.959998e+00	ci left: 2.021805e-07	ci right 2.865119e-06	k: 3	n:3060000
FIP1L1   3060000 perm   4428 sec   (691 perm/sec)   p_kst 9.803922e-07   p_cons 9.979275e-01   p_joint 2.614379e-06

Joint ci ratio: 1.306665e+00	ci left: 1.125027e-06	ci right 5.134583e-06	k: 8	n:3070000
Cons ci ratio: 1.019758e-04	ci left: 9.978755e-01	ci right 9.979776e-01	k: 3063636	n:3070000
KS ci ratio: 1.959998e+00	ci left: 2.015219e-07	ci right 2.855787e-06	k: 3	n:3070000
FIP1L1   3070000 perm   4454 sec   (689 perm/sec)   p_kst 9.771987e-07   p_cons 9.979270e-01   p_joint 2.605863e-06

Joint ci ratio: 1.306665e+00	ci left: 1.121375e-06	ci right 5.117912e-06	k: 8	n:3080000
Cons ci ratio: 1.018762e-04	ci left: 9.978729e-01	ci right 9.979749e-01	k: 3073607	n:3080000
KS ci ratio: 1.959998e+00	ci left: 2.008676e-07	ci right 2.846515e-06	k: 3	n:3080000
FIP1L1   3080000 perm   4481 sec   (687 perm/sec)   p_kst 9.740260e-07   p_cons 9.979244e-01   p_joint 2.597403e-06

Joint ci ratio: 1.306665e+00	ci left: 1.117746e-06	ci right 5.101349e-06	k: 8	n:3090000
Cons ci ratio: 1.017528e-04	ci left: 9.978713e-01	ci right 9.979731e-01	k: 3083581	n:3090000
KS ci ratio: 1.959998e+00	ci left: 2.002176e-07	ci right 2.837303e-06	k: 3	n:3090000
FIP1L1   3090000 perm   4506 sec   (686 perm/sec)   p_kst 9.708738e-07   p_cons 9.979227e-01   p_joint 2.588997e-06

Joint ci ratio: 1.306665e+00	ci left: 1.114140e-06	ci right 5.084893e-06	k: 8	n:3100000
Cons ci ratio: 1.015824e-04	ci left: 9.978716e-01	ci right 9.979733e-01	k: 3093561	n:3100000
KS ci ratio: 1.959998e+00	ci left: 1.995717e-07	ci right 2.828150e-06	k: 3	n:3100000
FIP1L1   3100000 perm   4532 sec   (684 perm/sec)   p_kst 9.677419e-07   p_cons 9.979229e-01   p_joint 2.580645e-06

Joint ci ratio: 1.239611e+00	ci left: 1.323272e-06	ci right 5.493499e-06	k: 9	n:3110000
Cons ci ratio: 1.014129e-04	ci left: 9.978719e-01	ci right 9.979734e-01	k: 3103541	n:3110000
KS ci ratio: 1.959998e+00	ci left: 1.989300e-07	ci right 2.819056e-06	k: 3	n:3110000
FIP1L1   3110000 perm   4558 sec   (682 perm/sec)   p_kst 9.646302e-07   p_cons 9.979232e-01   p_joint 2.893891e-06

Joint ci ratio: 1.239611e+00	ci left: 1.319031e-06	ci right 5.475891e-06	k: 9	n:3120000
Cons ci ratio: 1.012677e-04	ci left: 9.978713e-01	ci right 9.979727e-01	k: 3113518	n:3120000
KS ci ratio: 1.959998e+00	ci left: 1.982924e-07	ci right 2.810021e-06	k: 3	n:3120000
FIP1L1   3120000 perm   4585 sec   (680 perm/sec)   p_kst 9.615385e-07   p_cons 9.979224e-01   p_joint 2.884615e-06

Joint ci ratio: 1.239611e+00	ci left: 1.314817e-06	ci right 5.458397e-06	k: 9	n:3130000
Cons ci ratio: 1.011231e-04	ci left: 9.978707e-01	ci right 9.979719e-01	k: 3123495	n:3130000
KS ci ratio: 1.959998e+00	ci left: 1.976589e-07	ci right 2.801043e-06	k: 3	n:3130000
FIP1L1   3130000 perm   4613 sec   (679 perm/sec)   p_kst 9.584665e-07   p_cons 9.979217e-01   p_joint 2.875399e-06

Joint ci ratio: 1.239611e+00	ci left: 1.310629e-06	ci right 5.441013e-06	k: 9	n:3140000
Cons ci ratio: 1.009713e-04	ci left: 9.978703e-01	ci right 9.979714e-01	k: 3133473	n:3140000
KS ci ratio: 1.959998e+00	ci left: 1.970294e-07	ci right 2.792123e-06	k: 3	n:3140000
FIP1L1   3140000 perm   4640 sec   (677 perm/sec)   p_kst 9.554140e-07   p_cons 9.979213e-01   p_joint 2.866242e-06

Joint ci ratio: 1.181922e+00	ci left: 1.522347e-06	ci right 5.838200e-06	k: 10	n:3150000
Cons ci ratio: 1.008203e-04	ci left: 9.978700e-01	ci right 9.979710e-01	k: 3143451	n:3150000
KS ci ratio: 1.753076e+00	ci left: 3.459891e-07	ci right 3.251295e-06	k: 4	n:3150000
FIP1L1   3150000 perm   4668 sec   (675 perm/sec)   p_kst 1.269841e-06   p_cons 9.979210e-01   p_joint 3.174603e-06

Joint ci ratio: 1.181922e+00	ci left: 1.517529e-06	ci right 5.819725e-06	k: 10	n:3160000
Cons ci ratio: 1.006775e-04	ci left: 9.978694e-01	ci right 9.979702e-01	k: 3153428	n:3160000
KS ci ratio: 1.753076e+00	ci left: 3.448942e-07	ci right 3.241006e-06	k: 4	n:3160000
FIP1L1   3160000 perm   4695 sec   (673 perm/sec)   p_kst 1.265823e-06   p_cons 9.979203e-01   p_joint 3.164557e-06

Joint ci ratio: 1.181922e+00	ci left: 1.512742e-06	ci right 5.801366e-06	k: 10	n:3170000
Cons ci ratio: 1.005278e-04	ci left: 9.978691e-01	ci right 9.979697e-01	k: 3163406	n:3170000
KS ci ratio: 1.753076e+00	ci left: 3.438062e-07	ci right 3.230782e-06	k: 4	n:3170000
FIP1L1   3170000 perm   4725 sec   (671 perm/sec)   p_kst 1.261830e-06   p_cons 9.979199e-01   p_joint 3.154574e-06

Joint ci ratio: 1.181922e+00	ci left: 1.507985e-06	ci right 5.783123e-06	k: 10	n:3180000
Cons ci ratio: 1.003635e-04	ci left: 9.978694e-01	ci right 9.979699e-01	k: 3173386	n:3180000
KS ci ratio: 1.753076e+00	ci left: 3.427251e-07	ci right 3.220622e-06	k: 4	n:3180000
FIP1L1   3180000 perm   4758 sec   (668 perm/sec)   p_kst 1.257862e-06   p_cons 9.979201e-01   p_joint 3.144654e-06

Joint ci ratio: 1.239611e+00	ci left: 1.290086e-06	ci right 5.355731e-06	k: 9	n:3190000
Cons ci ratio: 1.001924e-04	ci left: 9.978701e-01	ci right 9.979704e-01	k: 3183367	n:3190000
KS ci ratio: 1.753076e+00	ci left: 3.416507e-07	ci right 3.210526e-06	k: 4	n:3190000
FIP1L1   3190000 perm   4787 sec   (666 perm/sec)   p_kst 1.253918e-06   p_cons 9.979207e-01   p_joint 2.821317e-06

Joint ci ratio: 1.239611e+00	ci left: 1.286055e-06	ci right 5.338994e-06	k: 9	n:3200000
Cons ci ratio: 1.000448e-04	ci left: 9.978698e-01	ci right 9.979699e-01	k: 3193345	n:3200000
KS ci ratio: 1.753076e+00	ci left: 3.405830e-07	ci right 3.200493e-06	k: 4	n:3200000
FIP1L1   3200000 perm   4814 sec   (665 perm/sec)   p_kst 1.250000e-06   p_cons 9.979203e-01   p_joint 2.812500e-06

Joint ci ratio: 1.239611e+00	ci left: 1.282048e-06	ci right 5.322362e-06	k: 9	n:3210000
Cons ci ratio: 9.993531e-05	ci left: 9.978679e-01	ci right 9.979679e-01	k: 3203318	n:3210000
KS ci ratio: 1.753076e+00	ci left: 3.395220e-07	ci right 3.190523e-06	k: 4	n:3210000
FIP1L1   3210000 perm   4842 sec   (663 perm/sec)   p_kst 1.246106e-06   p_cons 9.979184e-01   p_joint 2.803738e-06

Joint ci ratio: 1.239611e+00	ci left: 1.278067e-06	ci right 5.305833e-06	k: 9	n:3220000
Cons ci ratio: 9.973661e-05	ci left: 9.978698e-01	ci right 9.979697e-01	k: 3213303	n:3220000
KS ci ratio: 1.753076e+00	ci left: 3.384676e-07	ci right 3.180615e-06	k: 4	n:3220000
FIP1L1   3220000 perm   4870 sec   (661 perm/sec)   p_kst 1.242236e-06   p_cons 9.979202e-01   p_joint 2.795031e-06

Joint ci ratio: 1.239611e+00	ci left: 1.274110e-06	ci right 5.289406e-06	k: 9	n:3230000
Cons ci ratio: 9.958357e-05	ci left: 9.978698e-01	ci right 9.979695e-01	k: 3223282	n:3230000
KS ci ratio: 1.753076e+00	ci left: 3.374197e-07	ci right 3.170767e-06	k: 4	n:3230000
FIP1L1   3230000 perm   4899 sec   (659 perm/sec)   p_kst 1.238390e-06   p_cons 9.979201e-01   p_joint 2.786378e-06

Joint ci ratio: 1.239611e+00	ci left: 1.270178e-06	ci right 5.273081e-06	k: 9	n:3240000
Cons ci ratio: 9.941646e-05	ci left: 9.978705e-01	ci right 9.979700e-01	k: 3233263	n:3240000
KS ci ratio: 1.753076e+00	ci left: 3.363783e-07	ci right 3.160981e-06	k: 4	n:3240000
FIP1L1   3240000 perm   4929 sec   (657 perm/sec)   p_kst 1.234568e-06   p_cons 9.979207e-01   p_joint 2.777778e-06

Joint ci ratio: 1.239611e+00	ci left: 1.266269e-06	ci right 5.256856e-06	k: 9	n:3250000
Cons ci ratio: 9.926489e-05	ci left: 9.978705e-01	ci right 9.979698e-01	k: 3243242	n:3250000
KS ci ratio: 1.753076e+00	ci left: 3.353433e-07	ci right 3.151255e-06	k: 4	n:3250000
FIP1L1   3250000 perm   4958 sec   (656 perm/sec)   p_kst 1.230769e-06   p_cons 9.979206e-01   p_joint 2.769231e-06

Joint ci ratio: 1.239611e+00	ci left: 1.262385e-06	ci right 5.240731e-06	k: 9	n:3260000
Cons ci ratio: 9.907738e-05	ci left: 9.978721e-01	ci right 9.979712e-01	k: 3253226	n:3260000
KS ci ratio: 1.753076e+00	ci left: 3.343146e-07	ci right 3.141589e-06	k: 4	n:3260000
FIP1L1   3260000 perm   4987 sec   (654 perm/sec)   p_kst 1.226994e-06   p_cons 9.979221e-01   p_joint 2.760736e-06

Joint ci ratio: 1.239611e+00	ci left: 1.258525e-06	ci right 5.224704e-06	k: 9	n:3270000
Cons ci ratio: 9.893466e-05	ci left: 9.978718e-01	ci right 9.979708e-01	k: 3263204	n:3270000
KS ci ratio: 1.753076e+00	ci left: 3.332923e-07	ci right 3.131981e-06	k: 4	n:3270000
FIP1L1   3270000 perm   5016 sec   (652 perm/sec)   p_kst 1.223242e-06   p_cons 9.979217e-01   p_joint 2.752294e-06

Joint ci ratio: 1.239611e+00	ci left: 1.254688e-06	ci right 5.208775e-06	k: 9	n:3280000
Cons ci ratio: 9.883608e-05	ci left: 9.978696e-01	ci right 9.979685e-01	k: 3273176	n:3280000
KS ci ratio: 1.753076e+00	ci left: 3.322761e-07	ci right 3.122433e-06	k: 4	n:3280000
FIP1L1   3280000 perm   5046 sec   (650 perm/sec)   p_kst 1.219512e-06   p_cons 9.979195e-01   p_joint 2.743902e-06

Joint ci ratio: 1.239611e+00	ci left: 1.250874e-06	ci right 5.192943e-06	k: 9	n:3290000
Cons ci ratio: 9.872326e-05	ci left: 9.978681e-01	ci right 9.979669e-01	k: 3283150	n:3290000
KS ci ratio: 1.753076e+00	ci left: 3.312662e-07	ci right 3.112942e-06	k: 4	n:3290000
FIP1L1   3290000 perm   5075 sec   (648 perm/sec)   p_kst 1.215805e-06   p_cons 9.979179e-01   p_joint 2.735562e-06

Joint ci ratio: 1.239611e+00	ci left: 1.247083e-06	ci right 5.177207e-06	k: 9	n:3300000
Cons ci ratio: 9.854608e-05	ci left: 9.978693e-01	ci right 9.979680e-01	k: 3293133	n:3300000
KS ci ratio: 1.753076e+00	ci left: 3.302623e-07	ci right 3.103509e-06	k: 4	n:3300000
FIP1L1   3300000 perm   5104 sec   (647 perm/sec)   p_kst 1.212121e-06   p_cons 9.979191e-01   p_joint 2.727273e-06

Joint ci ratio: 1.239611e+00	ci left: 1.243316e-06	ci right 5.161566e-06	k: 9	n:3310000
Cons ci ratio: 9.842707e-05	ci left: 9.978681e-01	ci right 9.979666e-01	k: 3303108	n:3310000
KS ci ratio: 1.753076e+00	ci left: 3.292646e-07	ci right 3.094133e-06	k: 4	n:3310000
FIP1L1   3310000 perm   5132 sec   (645 perm/sec)   p_kst 1.208459e-06   p_cons 9.979178e-01   p_joint 2.719033e-06

Joint ci ratio: 1.239611e+00	ci left: 1.239571e-06	ci right 5.146019e-06	k: 9	n:3320000
Cons ci ratio: 9.828710e-05	ci left: 9.978678e-01	ci right 9.979662e-01	k: 3313086	n:3320000
KS ci ratio: 1.753076e+00	ci left: 3.282728e-07	ci right 3.084813e-06	k: 4	n:3320000
FIP1L1   3320000 perm   5163 sec   (643 perm/sec)   p_kst 1.204819e-06   p_cons 9.979175e-01   p_joint 2.710843e-06

Joint ci ratio: 1.239611e+00	ci left: 1.235848e-06	ci right 5.130565e-06	k: 9	n:3330000
Cons ci ratio: 9.816189e-05	ci left: 9.978670e-01	ci right 9.979652e-01	k: 3323062	n:3330000
KS ci ratio: 1.753076e+00	ci left: 3.272870e-07	ci right 3.075549e-06	k: 4	n:3330000
FIP1L1   3330000 perm   5192 sec   (641 perm/sec)   p_kst 1.201201e-06   p_cons 9.979165e-01   p_joint 2.702703e-06

Joint ci ratio: 1.239611e+00	ci left: 1.232148e-06	ci right 5.115204e-06	k: 9	n:3340000
Cons ci ratio: 9.798775e-05	ci left: 9.978682e-01	ci right 9.979663e-01	k: 3333045	n:3340000
KS ci ratio: 1.753076e+00	ci left: 3.263071e-07	ci right 3.066341e-06	k: 4	n:3340000
FIP1L1   3340000 perm   5220 sec   (640 perm/sec)   p_kst 1.197605e-06   p_cons 9.979177e-01   p_joint 2.694611e-06

Joint ci ratio: 1.239611e+00	ci left: 1.228470e-06	ci right 5.099935e-06	k: 9	n:3350000
Cons ci ratio: 9.784261e-05	ci left: 9.978682e-01	ci right 9.979661e-01	k: 3343024	n:3350000
KS ci ratio: 1.753076e+00	ci left: 3.253330e-07	ci right 3.057188e-06	k: 4	n:3350000
FIP1L1   3350000 perm   5250 sec   (638 perm/sec)   p_kst 1.194030e-06   p_cons 9.979176e-01   p_joint 2.686567e-06

Joint ci ratio: 1.385927e+00	ci left: 8.376084e-07	ci right 4.292458e-06	k: 7	n:3360000
Cons ci ratio: 9.771909e-05	ci left: 9.978673e-01	ci right 9.979651e-01	k: 3353000	n:3360000
KS ci ratio: 2.771857e+00	ci left: 7.535062e-09	ci right 1.658226e-06	k: 1	n:3360000
FIP1L1   3360000 perm   5280 sec   (636 perm/sec)   p_kst 2.976190e-07   p_cons 9.979167e-01   p_joint 2.083333e-06

Joint ci ratio: 1.385927e+00	ci left: 8.351230e-07	ci right 4.279721e-06	k: 7	n:3370000
Cons ci ratio: 9.756122e-05	ci left: 9.978680e-01	ci right 9.979656e-01	k: 3362981	n:3370000
KS ci ratio: 2.771857e+00	ci left: 7.512703e-09	ci right 1.653306e-06	k: 1	n:3370000
FIP1L1   3370000 perm   5310 sec   (635 perm/sec)   p_kst 2.967359e-07   p_cons 9.979172e-01   p_joint 2.077151e-06

Joint ci ratio: 1.385927e+00	ci left: 8.326522e-07	ci right 4.267059e-06	k: 7	n:3380000
Cons ci ratio: 9.740410e-05	ci left: 9.978686e-01	ci right 9.979661e-01	k: 3372962	n:3380000
KS ci ratio: 2.771857e+00	ci left: 7.490476e-09	ci right 1.648414e-06	k: 1	n:3380000
FIP1L1   3380000 perm   5339 sec   (633 perm/sec)   p_kst 2.958580e-07   p_cons 9.979178e-01   p_joint 2.071006e-06

Joint ci ratio: 1.385927e+00	ci left: 8.301960e-07	ci right 4.254472e-06	k: 7	n:3390000
Cons ci ratio: 9.724082e-05	ci left: 9.978695e-01	ci right 9.979668e-01	k: 3382944	n:3390000
KS ci ratio: 2.771857e+00	ci left: 7.468380e-09	ci right 1.643552e-06	k: 1	n:3390000
FIP1L1   3390000 perm   5368 sec   (632 perm/sec)   p_kst 2.949853e-07   p_cons 9.979186e-01   p_joint 2.064897e-06

Joint ci ratio: 1.385927e+00	ci left: 8.277542e-07	ci right 4.241959e-06	k: 7	n:3400000
Cons ci ratio: 9.711959e-05	ci left: 9.978686e-01	ci right 9.979658e-01	k: 3392920	n:3400000
KS ci ratio: 2.771857e+00	ci left: 7.446414e-09	ci right 1.638718e-06	k: 1	n:3400000
FIP1L1   3400000 perm   5398 sec   (630 perm/sec)   p_kst 2.941176e-07   p_cons 9.979176e-01   p_joint 2.058824e-06

Joint ci ratio: 1.385927e+00	ci left: 8.253268e-07	ci right 4.229519e-06	k: 7	n:3410000
Cons ci ratio: 9.694405e-05	ci left: 9.978701e-01	ci right 9.979672e-01	k: 3402904	n:3410000
KS ci ratio: 2.771857e+00	ci left: 7.424577e-09	ci right 1.633912e-06	k: 1	n:3410000
FIP1L1   3410000 perm   5429 sec   (628 perm/sec)   p_kst 2.932551e-07   p_cons 9.979191e-01   p_joint 2.052786e-06

Joint ci ratio: 1.385927e+00	ci left: 8.229136e-07	ci right 4.217152e-06	k: 7	n:3420000
Cons ci ratio: 9.682394e-05	ci left: 9.978693e-01	ci right 9.979662e-01	k: 3412880	n:3420000
KS ci ratio: 2.771857e+00	ci left: 7.402868e-09	ci right 1.629134e-06	k: 1	n:3420000
FIP1L1   3420000 perm   5458 sec   (627 perm/sec)   p_kst 2.923977e-07   p_cons 9.979181e-01   p_joint 2.046784e-06

Joint ci ratio: 1.385927e+00	ci left: 8.205144e-07	ci right 4.204857e-06	k: 7	n:3430000
Cons ci ratio: 9.665677e-05	ci left: 9.978704e-01	ci right 9.979672e-01	k: 3422863	n:3430000
KS ci ratio: 2.771857e+00	ci left: 7.381285e-09	ci right 1.624385e-06	k: 1	n:3430000
FIP1L1   3430000 perm   5487 sec   (625 perm/sec)   p_kst 2.915452e-07   p_cons 9.979192e-01   p_joint 2.040816e-06

Joint ci ratio: 1.385927e+00	ci left: 8.181292e-07	ci right 4.192634e-06	k: 7	n:3440000
Cons ci ratio: 9.650395e-05	ci left: 9.978711e-01	ci right 9.979676e-01	k: 3432844	n:3440000
KS ci ratio: 2.771857e+00	ci left: 7.359828e-09	ci right 1.619663e-06	k: 1	n:3440000
FIP1L1   3440000 perm   5519 sec   (623 perm/sec)   p_kst 2.906977e-07   p_cons 9.979198e-01   p_joint 2.034884e-06

Joint ci ratio: 1.385927e+00	ci left: 8.157578e-07	ci right 4.180481e-06	k: 7	n:3450000
Cons ci ratio: 9.639220e-05	ci left: 9.978699e-01	ci right 9.979664e-01	k: 3442819	n:3450000
KS ci ratio: 2.771857e+00	ci left: 7.338495e-09	ci right 1.614968e-06	k: 1	n:3450000
FIP1L1   3450000 perm   5547 sec   (622 perm/sec)   p_kst 2.898551e-07   p_cons 9.979186e-01   p_joint 2.028986e-06

Joint ci ratio: 1.385927e+00	ci left: 8.134001e-07	ci right 4.168399e-06	k: 7	n:3460000
Cons ci ratio: 9.622054e-05	ci left: 9.978714e-01	ci right 9.979677e-01	k: 3452803	n:3460000
KS ci ratio: 2.771857e+00	ci left: 7.317286e-09	ci right 1.610300e-06	k: 1	n:3460000
FIP1L1   3460000 perm   5577 sec   (620 perm/sec)   p_kst 2.890173e-07   p_cons 9.979199e-01   p_joint 2.023121e-06

Joint ci ratio: 1.385927e+00	ci left: 8.110560e-07	ci right 4.156386e-06	k: 7	n:3470000
Cons ci ratio: 9.604975e-05	ci left: 9.978728e-01	ci right 9.979690e-01	k: 3462787	n:3470000
KS ci ratio: 2.771857e+00	ci left: 7.296198e-09	ci right 1.605660e-06	k: 1	n:3470000
FIP1L1   3470000 perm   5607 sec   (619 perm/sec)   p_kst 2.881844e-07   p_cons 9.979213e-01   p_joint 2.017291e-06

Joint ci ratio: 1.385927e+00	ci left: 8.087254e-07	ci right 4.144443e-06	k: 7	n:3480000
Cons ci ratio: 9.591969e-05	ci left: 9.978726e-01	ci right 9.979686e-01	k: 3472765	n:3480000
KS ci ratio: 2.771857e+00	ci left: 7.275232e-09	ci right 1.601046e-06	k: 1	n:3480000
FIP1L1   3480000 perm   5637 sec   (617 perm/sec)   p_kst 2.873563e-07   p_cons 9.979210e-01   p_joint 2.011494e-06

Joint ci ratio: 1.385928e+00	ci left: 8.064081e-07	ci right 4.132567e-06	k: 7	n:3490000
Cons ci ratio: 9.579015e-05	ci left: 9.978723e-01	ci right 9.979682e-01	k: 3482743	n:3490000
KS ci ratio: 2.771857e+00	ci left: 7.254386e-09	ci right 1.596458e-06	k: 1	n:3490000
FIP1L1   3490000 perm   5667 sec   (616 perm/sec)   p_kst 2.865330e-07   p_cons 9.979206e-01   p_joint 2.005731e-06

Joint ci ratio: 1.385928e+00	ci left: 8.041041e-07	ci right 4.120760e-06	k: 7	n:3500000
Cons ci ratio: 9.567430e-05	ci left: 9.978714e-01	ci right 9.979672e-01	k: 3492719	n:3500000
KS ci ratio: 2.771857e+00	ci left: 7.233659e-09	ci right 1.591897e-06	k: 1	n:3500000
FIP1L1   3500000 perm   5697 sec   (614 perm/sec)   p_kst 2.857143e-07   p_cons 9.979197e-01   p_joint 2.000000e-06

Joint ci ratio: 1.385928e+00	ci left: 8.018132e-07	ci right 4.109020e-06	k: 7	n:3510000
Cons ci ratio: 9.559162e-05	ci left: 9.978691e-01	ci right 9.979648e-01	k: 3502690	n:3510000
KS ci ratio: 2.771857e+00	ci left: 7.213051e-09	ci right 1.587362e-06	k: 1	n:3510000
FIP1L1   3510000 perm   5729 sec   (613 perm/sec)   p_kst 2.849003e-07   p_cons 9.979174e-01   p_joint 1.994302e-06

Joint ci ratio: 1.385928e+00	ci left: 7.995353e-07	ci right 4.097347e-06	k: 7	n:3520000
Cons ci ratio: 9.543075e-05	ci left: 9.978703e-01	ci right 9.979658e-01	k: 3512673	n:3520000
KS ci ratio: 2.771857e+00	ci left: 7.192559e-09	ci right 1.582852e-06	k: 1	n:3520000
FIP1L1   3520000 perm   5760 sec   (611 perm/sec)   p_kst 2.840909e-07   p_cons 9.979185e-01   p_joint 1.988636e-06

Joint ci ratio: 1.385928e+00	ci left: 7.972703e-07	ci right 4.085739e-06	k: 7	n:3530000
Cons ci ratio: 9.529667e-05	ci left: 9.978703e-01	ci right 9.979657e-01	k: 3522652	n:3530000
KS ci ratio: 2.771857e+00	ci left: 7.172184e-09	ci right 1.578368e-06	k: 1	n:3530000
FIP1L1   3530000 perm   5789 sec   (610 perm/sec)   p_kst 2.832861e-07   p_cons 9.979184e-01   p_joint 1.983003e-06

Joint ci ratio: 1.385928e+00	ci left: 7.950182e-07	ci right 4.074198e-06	k: 7	n:3540000
Cons ci ratio: 9.520842e-05	ci left: 9.978683e-01	ci right 9.979636e-01	k: 3532624	n:3540000
KS ci ratio: 2.771857e+00	ci left: 7.151923e-09	ci right 1.573910e-06	k: 1	n:3540000
FIP1L1   3540000 perm   5818 sec   (608 perm/sec)   p_kst 2.824859e-07   p_cons 9.979164e-01   p_joint 1.977401e-06

Joint ci ratio: 1.385928e+00	ci left: 7.927787e-07	ci right 4.062721e-06	k: 7	n:3550000
Cons ci ratio: 9.510746e-05	ci left: 9.978669e-01	ci right 9.979621e-01	k: 3542598	n:3550000
KS ci ratio: 2.771857e+00	ci left: 7.131777e-09	ci right 1.569476e-06	k: 1	n:3550000
FIP1L1   3550000 perm   5847 sec   (607 perm/sec)   p_kst 2.816901e-07   p_cons 9.979149e-01   p_joint 1.971831e-06

Joint ci ratio: 1.385928e+00	ci left: 7.905518e-07	ci right 4.051309e-06	k: 7	n:3560000
Cons ci ratio: 9.497473e-05	ci left: 9.978670e-01	ci right 9.979620e-01	k: 3552577	n:3560000
KS ci ratio: 2.771857e+00	ci left: 7.111744e-09	ci right 1.565067e-06	k: 1	n:3560000
FIP1L1   3560000 perm   5877 sec   (606 perm/sec)   p_kst 2.808989e-07   p_cons 9.979149e-01   p_joint 1.966292e-06

Joint ci ratio: 1.385928e+00	ci left: 7.883373e-07	ci right 4.039961e-06	k: 7	n:3570000
Cons ci ratio: 9.482340e-05	ci left: 9.978678e-01	ci right 9.979627e-01	k: 3562559	n:3570000
KS ci ratio: 2.771857e+00	ci left: 7.091823e-09	ci right 1.560683e-06	k: 1	n:3570000
FIP1L1   3570000 perm   5906 sec   (604 perm/sec)   p_kst 2.801120e-07   p_cons 9.979157e-01   p_joint 1.960784e-06

Joint ci ratio: 1.385928e+00	ci left: 7.861353e-07	ci right 4.028676e-06	k: 7	n:3580000
Cons ci ratio: 9.474905e-05	ci left: 9.978653e-01	ci right 9.979601e-01	k: 3572529	n:3580000
KS ci ratio: 2.771857e+00	ci left: 7.072013e-09	ci right 1.556324e-06	k: 1	n:3580000
FIP1L1   3580000 perm   5936 sec   (603 perm/sec)   p_kst 2.793296e-07   p_cons 9.979131e-01   p_joint 1.955307e-06

Joint ci ratio: 1.385928e+00	ci left: 7.839455e-07	ci right 4.017454e-06	k: 7	n:3590000
Cons ci ratio: 9.468738e-05	ci left: 9.978622e-01	ci right 9.979570e-01	k: 3582497	n:3590000
KS ci ratio: 2.771857e+00	ci left: 7.052314e-09	ci right 1.551989e-06	k: 1	n:3590000
FIP1L1   3590000 perm   5965 sec   (602 perm/sec)   p_kst 2.785515e-07   p_cons 9.979100e-01   p_joint 1.949861e-06

Joint ci ratio: 1.385928e+00	ci left: 7.817679e-07	ci right 4.006295e-06	k: 7	n:3600000
Cons ci ratio: 9.456898e-05	ci left: 9.978617e-01	ci right 9.979564e-01	k: 3592474	n:3600000
KS ci ratio: 2.771857e+00	ci left: 7.032724e-09	ci right 1.547678e-06	k: 1	n:3600000
FIP1L1   3600000 perm   5995 sec   (600 perm/sec)   p_kst 2.777778e-07   p_cons 9.979094e-01   p_joint 1.944444e-06

Joint ci ratio: 1.385928e+00	ci left: 7.796023e-07	ci right 3.995197e-06	k: 7	n:3610000
Cons ci ratio: 9.445102e-05	ci left: 9.978612e-01	ci right 9.979557e-01	k: 3602451	n:3610000
KS ci ratio: 2.771857e+00	ci left: 7.013243e-09	ci right 1.543391e-06	k: 1	n:3610000
FIP1L1   3610000 perm   6025 sec   (599 perm/sec)   p_kst 2.770083e-07   p_cons 9.979089e-01   p_joint 1.939058e-06

Joint ci ratio: 1.385928e+00	ci left: 7.774487e-07	ci right 3.984160e-06	k: 7	n:3620000
Cons ci ratio: 9.431477e-05	ci left: 9.978615e-01	ci right 9.979559e-01	k: 3612431	n:3620000
KS ci ratio: 2.771857e+00	ci left: 6.993870e-09	ci right 1.539127e-06	k: 1	n:3620000
FIP1L1   3620000 perm   6054 sec   (598 perm/sec)   p_kst 2.762431e-07   p_cons 9.979091e-01   p_joint 1.933702e-06

Joint ci ratio: 1.385928e+00	ci left: 7.753070e-07	ci right 3.973185e-06	k: 7	n:3630000
Cons ci ratio: 9.419153e-05	ci left: 9.978613e-01	ci right 9.979555e-01	k: 3622409	n:3630000
KS ci ratio: 2.771857e+00	ci left: 6.974603e-09	ci right 1.534887e-06	k: 1	n:3630000
FIP1L1   3630000 perm   6085 sec   (597 perm/sec)   p_kst 2.754821e-07   p_cons 9.979088e-01   p_joint 1.928375e-06

Joint ci ratio: 1.385928e+00	ci left: 7.731770e-07	ci right 3.962269e-06	k: 7	n:3640000
Cons ci ratio: 9.411210e-05	ci left: 9.978591e-01	ci right 9.979533e-01	k: 3632380	n:3640000
KS ci ratio: 2.771857e+00	ci left: 6.955442e-09	ci right 1.530670e-06	k: 1	n:3640000
FIP1L1   3640000 perm   6115 sec   (595 perm/sec)   p_kst 2.747253e-07   p_cons 9.979066e-01   p_joint 1.923077e-06

Joint ci ratio: 1.385928e+00	ci left: 7.710587e-07	ci right 3.951414e-06	k: 7	n:3650000
Cons ci ratio: 9.395267e-05	ci left: 9.978605e-01	ci right 9.979546e-01	k: 3642364	n:3650000
KS ci ratio: 2.771857e+00	ci left: 6.936386e-09	ci right 1.526477e-06	k: 1	n:3650000
FIP1L1   3650000 perm   6145 sec   (594 perm/sec)   p_kst 2.739726e-07   p_cons 9.979079e-01   p_joint 1.917808e-06

Joint ci ratio: 1.385928e+00	ci left: 7.689520e-07	ci right 3.940618e-06	k: 7	n:3660000
Cons ci ratio: 9.380014e-05	ci left: 9.978617e-01	ci right 9.979556e-01	k: 3652347	n:3660000
KS ci ratio: 2.771857e+00	ci left: 6.917434e-09	ci right 1.522306e-06	k: 1	n:3660000
FIP1L1   3660000 perm   6175 sec   (593 perm/sec)   p_kst 2.732240e-07   p_cons 9.979090e-01   p_joint 1.912568e-06

Joint ci ratio: 1.385928e+00	ci left: 7.668568e-07	ci right 3.929880e-06	k: 7	n:3670000
Cons ci ratio: 9.366057e-05	ci left: 9.978623e-01	ci right 9.979560e-01	k: 3662328	n:3670000
KS ci ratio: 2.771857e+00	ci left: 6.898585e-09	ci right 1.518158e-06	k: 1	n:3670000
FIP1L1   3670000 perm   6206 sec   (591 perm/sec)   p_kst 2.724796e-07   p_cons 9.979095e-01   p_joint 1.907357e-06

Joint ci ratio: 1.385928e+00	ci left: 7.647729e-07	ci right 3.919201e-06	k: 7	n:3680000
Cons ci ratio: 9.352160e-05	ci left: 9.978629e-01	ci right 9.979565e-01	k: 3672309	n:3680000
KS ci ratio: 2.771857e+00	ci left: 6.879839e-09	ci right 1.514033e-06	k: 1	n:3680000
FIP1L1   3680000 perm   6237 sec   (590 perm/sec)   p_kst 2.717391e-07   p_cons 9.979101e-01   p_joint 1.902174e-06

Joint ci ratio: 1.385928e+00	ci left: 7.627003e-07	ci right 3.908580e-06	k: 7	n:3690000
Cons ci ratio: 9.334077e-05	ci left: 9.978654e-01	ci right 9.979588e-01	k: 3682297	n:3690000
KS ci ratio: 2.771857e+00	ci left: 6.861195e-09	ci right 1.509930e-06	k: 1	n:3690000
FIP1L1   3690000 perm   6268 sec   (589 perm/sec)   p_kst 2.710027e-07   p_cons 9.979125e-01   p_joint 1.897019e-06

Joint ci ratio: 1.385928e+00	ci left: 7.606390e-07	ci right 3.898016e-06	k: 7	n:3700000
Cons ci ratio: 9.317295e-05	ci left: 9.978673e-01	ci right 9.979606e-01	k: 3692283	n:3700000
KS ci ratio: 2.771857e+00	ci left: 6.842651e-09	ci right 1.505849e-06	k: 1	n:3700000
FIP1L1   3700000 perm   6300 sec   (587 perm/sec)   p_kst 2.702703e-07   p_cons 9.979143e-01   p_joint 1.891892e-06

Joint ci ratio: 1.385928e+00	ci left: 7.585887e-07	ci right 3.887510e-06	k: 7	n:3710000
Cons ci ratio: 9.301199e-05	ci left: 9.978690e-01	ci right 9.979621e-01	k: 3702268	n:3710000
KS ci ratio: 2.771857e+00	ci left: 6.824207e-09	ci right 1.501790e-06	k: 1	n:3710000
FIP1L1   3710000 perm   6330 sec   (586 perm/sec)   p_kst 2.695418e-07   p_cons 9.979159e-01   p_joint 1.886792e-06

Joint ci ratio: 1.385928e+00	ci left: 7.565495e-07	ci right 3.877059e-06	k: 7	n:3720000
Cons ci ratio: 9.289383e-05	ci left: 9.978687e-01	ci right 9.979617e-01	k: 3712246	n:3720000
KS ci ratio: 2.771857e+00	ci left: 6.805862e-09	ci right 1.497753e-06	k: 1	n:3720000
FIP1L1   3720000 perm   6360 sec   (585 perm/sec)   p_kst 2.688172e-07   p_cons 9.979156e-01   p_joint 1.881720e-06

Joint ci ratio: 1.385928e+00	ci left: 7.545212e-07	ci right 3.866665e-06	k: 7	n:3730000
Cons ci ratio: 9.278808e-05	ci left: 9.978679e-01	ci right 9.979608e-01	k: 3722222	n:3730000
KS ci ratio: 2.771857e+00	ci left: 6.787616e-09	ci right 1.493737e-06	k: 1	n:3730000
FIP1L1   3730000 perm   6392 sec   (584 perm/sec)   p_kst 2.680965e-07   p_cons 9.979147e-01   p_joint 1.876676e-06

Joint ci ratio: 1.385928e+00	ci left: 7.525038e-07	ci right 3.856326e-06	k: 7	n:3740000
Cons ci ratio: 9.270051e-05	ci left: 9.978663e-01	ci right 9.979591e-01	k: 3732195	n:3740000
KS ci ratio: 2.771857e+00	ci left: 6.769467e-09	ci right 1.489743e-06	k: 1	n:3740000
FIP1L1   3740000 perm   6425 sec   (582 perm/sec)   p_kst 2.673797e-07   p_cons 9.979131e-01   p_joint 1.871658e-06

Joint ci ratio: 1.385928e+00	ci left: 7.504971e-07	ci right 3.846043e-06	k: 7	n:3750000
Cons ci ratio: 9.253610e-05	ci left: 9.978682e-01	ci right 9.979608e-01	k: 3742181	n:3750000
KS ci ratio: 2.771857e+00	ci left: 6.751415e-09	ci right 1.485771e-06	k: 1	n:3750000
FIP1L1   3750000 perm   6456 sec   (581 perm/sec)   p_kst 2.666667e-07   p_cons 9.979149e-01   p_joint 1.866667e-06

Joint ci ratio: 1.385928e+00	ci left: 7.485011e-07	ci right 3.835814e-06	k: 7	n:3760000
Cons ci ratio: 9.240792e-05	ci left: 9.978685e-01	ci right 9.979610e-01	k: 3752161	n:3760000
KS ci ratio: 2.771857e+00	ci left: 6.733460e-09	ci right 1.481819e-06	k: 1	n:3760000
FIP1L1   3760000 perm   6487 sec   (580 perm/sec)   p_kst 2.659574e-07   p_cons 9.979152e-01   p_joint 1.861702e-06

Joint ci ratio: 1.385928e+00	ci left: 7.465157e-07	ci right 3.825640e-06	k: 7	n:3770000
Cons ci ratio: 9.236260e-05	ci left: 9.978651e-01	ci right 9.979575e-01	k: 3762127	n:3770000
KS ci ratio: 2.771857e+00	ci left: 6.715599e-09	ci right 1.477889e-06	k: 1	n:3770000
FIP1L1   3770000 perm   6520 sec   (578 perm/sec)   p_kst 2.652520e-07   p_cons 9.979117e-01   p_joint 1.856764e-06

Joint ci ratio: 1.385928e+00	ci left: 7.445408e-07	ci right 3.815519e-06	k: 7	n:3780000
Cons ci ratio: 9.224687e-05	ci left: 9.978648e-01	ci right 9.979571e-01	k: 3772105	n:3780000
KS ci ratio: 2.771857e+00	ci left: 6.697833e-09	ci right 1.473979e-06	k: 1	n:3780000
FIP1L1   3780000 perm   6553 sec   (577 perm/sec)   p_kst 2.645503e-07   p_cons 9.979114e-01   p_joint 1.851852e-06

Joint ci ratio: 1.385928e+00	ci left: 7.425763e-07	ci right 3.805452e-06	k: 7	n:3790000
Cons ci ratio: 9.217237e-05	ci left: 9.978627e-01	ci right 9.979550e-01	k: 3782076	n:3790000
KS ci ratio: 2.771857e+00	ci left: 6.680160e-09	ci right 1.470090e-06	k: 1	n:3790000
FIP1L1   3790000 perm   6584 sec   (576 perm/sec)   p_kst 2.638522e-07   p_cons 9.979092e-01   p_joint 1.846966e-06

Joint ci ratio: 1.385928e+00	ci left: 7.406222e-07	ci right 3.795437e-06	k: 7	n:3800000
Cons ci ratio: 9.209215e-05	ci left: 9.978609e-01	ci right 9.979531e-01	k: 3792048	n:3800000
KS ci ratio: 2.771857e+00	ci left: 6.662581e-09	ci right 1.466221e-06	k: 1	n:3800000
FIP1L1   3800000 perm   6616 sec   (574 perm/sec)   p_kst 2.631579e-07   p_cons 9.979074e-01   p_joint 1.842105e-06

Joint ci ratio: 1.385928e+00	ci left: 7.386783e-07	ci right 3.785475e-06	k: 7	n:3810000
Cons ci ratio: 9.199474e-05	ci left: 9.978599e-01	ci right 9.979519e-01	k: 3802023	n:3810000
KS ci ratio: 2.771857e+00	ci left: 6.645094e-09	ci right 1.462373e-06	k: 1	n:3810000
FIP1L1   3810000 perm   6647 sec   (573 perm/sec)   p_kst 2.624672e-07   p_cons 9.979063e-01   p_joint 1.837270e-06

Joint ci ratio: 1.385928e+00	ci left: 7.367446e-07	ci right 3.775566e-06	k: 7	n:3820000
Cons ci ratio: 9.189761e-05	ci left: 9.978589e-01	ci right 9.979508e-01	k: 3811998	n:3820000
KS ci ratio: 2.771857e+00	ci left: 6.627698e-09	ci right 1.458545e-06	k: 1	n:3820000
FIP1L1   3820000 perm   6679 sec   (572 perm/sec)   p_kst 2.617801e-07   p_cons 9.979052e-01   p_joint 1.832461e-06

Joint ci ratio: 1.385928e+00	ci left: 7.348209e-07	ci right 3.765708e-06	k: 7	n:3830000
Cons ci ratio: 9.180077e-05	ci left: 9.978579e-01	ci right 9.979497e-01	k: 3821973	n:3830000
KS ci ratio: 2.771857e+00	ci left: 6.610394e-09	ci right 1.454736e-06	k: 1	n:3830000
FIP1L1   3830000 perm   6710 sec   (571 perm/sec)   p_kst 2.610966e-07   p_cons 9.979042e-01   p_joint 1.827676e-06

Joint ci ratio: 1.385928e+00	ci left: 7.329073e-07	ci right 3.755901e-06	k: 7	n:3840000
Cons ci ratio: 9.170421e-05	ci left: 9.978569e-01	ci right 9.979486e-01	k: 3831948	n:3840000
KS ci ratio: 2.771857e+00	ci left: 6.593179e-09	ci right 1.450948e-06	k: 1	n:3840000
FIP1L1   3840000 perm   6742 sec   (570 perm/sec)   p_kst 2.604167e-07   p_cons 9.979031e-01   p_joint 1.822917e-06

Joint ci ratio: 1.385928e+00	ci left: 7.310037e-07	ci right 3.746146e-06	k: 7	n:3850000
Cons ci ratio: 9.159657e-05	ci left: 9.978564e-01	ci right 9.979481e-01	k: 3841925	n:3850000
KS ci ratio: 2.771858e+00	ci left: 6.576054e-09	ci right 1.447179e-06	k: 1	n:3850000
FIP1L1   3850000 perm   6773 sec   (568 perm/sec)   p_kst 2.597403e-07   p_cons 9.979026e-01   p_joint 1.818182e-06

Joint ci ratio: 1.385928e+00	ci left: 7.291099e-07	ci right 3.736441e-06	k: 7	n:3860000
Cons ci ratio: 9.142135e-05	ci left: 9.978591e-01	ci right 9.979505e-01	k: 3851914	n:3860000
KS ci ratio: 2.771858e+00	ci left: 6.559018e-09	ci right 1.443430e-06	k: 1	n:3860000
FIP1L1   3860000 perm   6805 sec   (567 perm/sec)   p_kst 2.590674e-07   p_cons 9.979052e-01   p_joint 1.813472e-06

Joint ci ratio: 1.385928e+00	ci left: 7.272259e-07	ci right 3.726786e-06	k: 7	n:3870000
Cons ci ratio: 9.132600e-05	ci left: 9.978581e-01	ci right 9.979495e-01	k: 3861889	n:3870000
KS ci ratio: 2.771858e+00	ci left: 6.542069e-09	ci right 1.439700e-06	k: 1	n:3870000
FIP1L1   3870000 perm   6836 sec   (566 perm/sec)   p_kst 2.583979e-07   p_cons 9.979041e-01   p_joint 1.808786e-06

Joint ci ratio: 1.385928e+00	ci left: 7.253516e-07	ci right 3.717181e-06	k: 7	n:3880000
Cons ci ratio: 9.120845e-05	ci left: 9.978581e-01	ci right 9.979494e-01	k: 3871868	n:3880000
KS ci ratio: 2.771858e+00	ci left: 6.525208e-09	ci right 1.435990e-06	k: 1	n:3880000
FIP1L1   3880000 perm   6869 sec   (565 perm/sec)   p_kst 2.577320e-07   p_cons 9.979041e-01   p_joint 1.804124e-06

Joint ci ratio: 1.385928e+00	ci left: 7.234869e-07	ci right 3.707625e-06	k: 7	n:3890000
Cons ci ratio: 9.110255e-05	ci left: 9.978576e-01	ci right 9.979488e-01	k: 3881845	n:3890000
KS ci ratio: 2.771858e+00	ci left: 6.508434e-09	ci right 1.432298e-06	k: 1	n:3890000
FIP1L1   3890000 perm   6901 sec   (564 perm/sec)   p_kst 2.570694e-07   p_cons 9.979036e-01   p_joint 1.799486e-06

Joint ci ratio: 1.385928e+00	ci left: 7.216318e-07	ci right 3.698118e-06	k: 7	n:3900000
Cons ci ratio: 9.096356e-05	ci left: 9.978587e-01	ci right 9.979498e-01	k: 3891828	n:3900000
KS ci ratio: 2.771858e+00	ci left: 6.491746e-09	ci right 1.428626e-06	k: 1	n:3900000
FIP1L1   3900000 perm   6933 sec   (563 perm/sec)   p_kst 2.564103e-07   p_cons 9.979046e-01   p_joint 1.794872e-06

Joint ci ratio: 1.385928e+00	ci left: 7.197862e-07	ci right 3.688660e-06	k: 7	n:3910000
Cons ci ratio: 9.084741e-05	ci left: 9.978588e-01	ci right 9.979497e-01	k: 3901807	n:3910000
KS ci ratio: 2.771858e+00	ci left: 6.475143e-09	ci right 1.424972e-06	k: 1	n:3910000
FIP1L1   3910000 perm   6965 sec   (561 perm/sec)   p_kst 2.557545e-07   p_cons 9.979046e-01   p_joint 1.790281e-06

Joint ci ratio: 1.385928e+00	ci left: 7.179501e-07	ci right 3.679250e-06	k: 7	n:3920000
Cons ci ratio: 9.074277e-05	ci left: 9.978583e-01	ci right 9.979491e-01	k: 3911784	n:3920000
KS ci ratio: 2.771858e+00	ci left: 6.458624e-09	ci right 1.421337e-06	k: 1	n:3920000
FIP1L1   3920000 perm   6996 sec   (560 perm/sec)   p_kst 2.551020e-07   p_cons 9.979041e-01   p_joint 1.785714e-06

Joint ci ratio: 1.385928e+00	ci left: 7.161232e-07	ci right 3.669888e-06	k: 7	n:3930000
Cons ci ratio: 9.065501e-05	ci left: 9.978571e-01	ci right 9.979478e-01	k: 3921758	n:3930000
KS ci ratio: 2.771858e+00	ci left: 6.442190e-09	ci right 1.417720e-06	k: 1	n:3930000
FIP1L1   3930000 perm   7028 sec   (559 perm/sec)   p_kst 2.544529e-07   p_cons 9.979028e-01   p_joint 1.781170e-06

Joint ci ratio: 1.385928e+00	ci left: 7.143056e-07	ci right 3.660574e-06	k: 7	n:3940000
Cons ci ratio: 9.056748e-05	ci left: 9.978558e-01	ci right 9.979465e-01	k: 3931732	n:3940000
KS ci ratio: 2.771858e+00	ci left: 6.425839e-09	ci right 1.414122e-06	k: 1	n:3940000
FIP1L1   3940000 perm   7060 sec   (558 perm/sec)   p_kst 2.538071e-07   p_cons 9.979015e-01   p_joint 1.776650e-06

Joint ci ratio: 1.385928e+00	ci left: 7.124973e-07	ci right 3.651307e-06	k: 7	n:3950000
Cons ci ratio: 9.044737e-05	ci left: 9.978562e-01	ci right 9.979467e-01	k: 3941712	n:3950000
KS ci ratio: 2.771858e+00	ci left: 6.409572e-09	ci right 1.410542e-06	k: 1	n:3950000
FIP1L1   3950000 perm   7092 sec   (557 perm/sec)   p_kst 2.531646e-07   p_cons 9.979018e-01   p_joint 1.772152e-06

Joint ci ratio: 1.385928e+00	ci left: 7.106980e-07	ci right 3.642086e-06	k: 7	n:3960000
Cons ci ratio: 9.033318e-05	ci left: 9.978562e-01	ci right 9.979466e-01	k: 3951691	n:3960000
KS ci ratio: 2.771858e+00	ci left: 6.393386e-09	ci right 1.406980e-06	k: 1	n:3960000
FIP1L1   3960000 perm   7124 sec   (556 perm/sec)   p_kst 2.525253e-07   p_cons 9.979018e-01   p_joint 1.767677e-06

Joint ci ratio: 1.385928e+00	ci left: 7.089079e-07	ci right 3.632912e-06	k: 7	n:3970000
Cons ci ratio: 9.020314e-05	ci left: 9.978570e-01	ci right 9.979473e-01	k: 3961673	n:3970000
KS ci ratio: 2.771858e+00	ci left: 6.377281e-09	ci right 1.403436e-06	k: 1	n:3970000
FIP1L1   3970000 perm   7156 sec   (555 perm/sec)   p_kst 2.518892e-07   p_cons 9.979025e-01   p_joint 1.763224e-06

Joint ci ratio: 1.385928e+00	ci left: 7.071267e-07	ci right 3.623784e-06	k: 7	n:3980000
Cons ci ratio: 9.007365e-05	ci left: 9.978578e-01	ci right 9.979480e-01	k: 3971655	n:3980000
KS ci ratio: 2.771858e+00	ci left: 6.361258e-09	ci right 1.399910e-06	k: 1	n:3980000
FIP1L1   3980000 perm   7187 sec   (554 perm/sec)   p_kst 2.512563e-07   p_cons 9.979033e-01   p_joint 1.758794e-06

Joint ci ratio: 1.385928e+00	ci left: 7.053544e-07	ci right 3.614702e-06	k: 7	n:3990000
Cons ci ratio: 9.000934e-05	ci left: 9.978556e-01	ci right 9.979457e-01	k: 3981625	n:3990000
KS ci ratio: 2.771858e+00	ci left: 6.345315e-09	ci right 1.396401e-06	k: 1	n:3990000
FIP1L1   3990000 perm   7220 sec   (553 perm/sec)   p_kst 2.506266e-07   p_cons 9.979010e-01   p_joint 1.754386e-06

Joint ci ratio: 1.385928e+00	ci left: 7.035910e-07	ci right 3.605665e-06	k: 7	n:4000000
Cons ci ratio: 8.990752e-05	ci left: 9.978552e-01	ci right 9.979451e-01	k: 3991602	n:4000000
KS ci ratio: 2.771858e+00	ci left: 6.329452e-09	ci right 1.392910e-06	k: 1	n:4000000
FIP1L1   4000000 perm   7251 sec   (552 perm/sec)   p_kst 2.500000e-07   p_cons 9.979005e-01   p_joint 1.750000e-06

Joint ci ratio: 1.385928e+00	ci left: 7.018365e-07	ci right 3.596674e-06	k: 7	n:4010000
Cons ci ratio: 8.980070e-05	ci left: 9.978550e-01	ci right 9.979448e-01	k: 4001580	n:4010000
KS ci ratio: 2.771858e+00	ci left: 6.313668e-09	ci right 1.389436e-06	k: 1	n:4010000
FIP1L1   4010000 perm   7283 sec   (551 perm/sec)   p_kst 2.493766e-07   p_cons 9.979002e-01   p_joint 1.745636e-06

Joint ci ratio: 1.385928e+00	ci left: 7.000906e-07	ci right 3.587727e-06	k: 7	n:4020000
Cons ci ratio: 8.966765e-05	ci left: 9.978560e-01	ci right 9.979457e-01	k: 4011563	n:4020000
KS ci ratio: 2.771858e+00	ci left: 6.297962e-09	ci right 1.385980e-06	k: 1	n:4020000
FIP1L1   4020000 perm   7316 sec   (549 perm/sec)   p_kst 2.487562e-07   p_cons 9.979012e-01   p_joint 1.741294e-06

Joint ci ratio: 1.385928e+00	ci left: 6.983534e-07	ci right 3.578824e-06	k: 7	n:4030000
Cons ci ratio: 8.957229e-05	ci left: 9.978553e-01	ci right 9.979450e-01	k: 4021539	n:4030000
KS ci ratio: 2.771858e+00	ci left: 6.282334e-09	ci right 1.382541e-06	k: 1	n:4030000
FIP1L1   4030000 perm   7349 sec   (548 perm/sec)   p_kst 2.481390e-07   p_cons 9.979005e-01   p_joint 1.736973e-06

Joint ci ratio: 1.385928e+00	ci left: 6.966248e-07	ci right 3.569966e-06	k: 7	n:4040000
Cons ci ratio: 8.945610e-05	ci left: 9.978556e-01	ci right 9.979451e-01	k: 4031519	n:4040000
KS ci ratio: 2.771858e+00	ci left: 6.266784e-09	ci right 1.379119e-06	k: 1	n:4040000
FIP1L1   4040000 perm   7382 sec   (547 perm/sec)   p_kst 2.475248e-07   p_cons 9.979007e-01   p_joint 1.732673e-06

Joint ci ratio: 1.385928e+00	ci left: 6.949047e-07	ci right 3.561151e-06	k: 7	n:4050000
Cons ci ratio: 8.934562e-05	ci left: 9.978557e-01	ci right 9.979451e-01	k: 4041498	n:4050000
KS ci ratio: 2.771858e+00	ci left: 6.251311e-09	ci right 1.375714e-06	k: 1	n:4050000
FIP1L1   4050000 perm   7414 sec   (546 perm/sec)   p_kst 2.469136e-07   p_cons 9.979007e-01   p_joint 1.728395e-06

Joint ci ratio: 1.385928e+00	ci left: 6.931931e-07	ci right 3.552380e-06	k: 7	n:4060000
Cons ci ratio: 8.922505e-05	ci left: 9.978562e-01	ci right 9.979455e-01	k: 4051479	n:4060000
KS ci ratio: 2.771858e+00	ci left: 6.235913e-09	ci right 1.372325e-06	k: 1	n:4060000
FIP1L1   4060000 perm   7447 sec   (545 perm/sec)   p_kst 2.463054e-07   p_cons 9.979012e-01   p_joint 1.724138e-06

Joint ci ratio: 1.385928e+00	ci left: 6.914900e-07	ci right 3.543652e-06	k: 7	n:4070000
Cons ci ratio: 8.910497e-05	ci left: 9.978568e-01	ci right 9.979459e-01	k: 4061460	n:4070000
KS ci ratio: 2.771858e+00	ci left: 6.220592e-09	ci right 1.368953e-06	k: 1	n:4070000
FIP1L1   4070000 perm   7480 sec   (544 perm/sec)   p_kst 2.457002e-07   p_cons 9.979017e-01   p_joint 1.719902e-06

Joint ci ratio: 1.385928e+00	ci left: 6.897951e-07	ci right 3.534966e-06	k: 7	n:4080000
Cons ci ratio: 8.898016e-05	ci left: 9.978576e-01	ci right 9.979466e-01	k: 4071442	n:4080000
KS ci ratio: 2.771858e+00	ci left: 6.205345e-09	ci right 1.365598e-06	k: 1	n:4080000
FIP1L1   4080000 perm   7513 sec   (543 perm/sec)   p_kst 2.450980e-07   p_cons 9.979025e-01   p_joint 1.715686e-06

Joint ci ratio: 1.385928e+00	ci left: 6.881086e-07	ci right 3.526323e-06	k: 7	n:4090000
Cons ci ratio: 8.887143e-05	ci left: 9.978576e-01	ci right 9.979466e-01	k: 4081421	n:4090000
KS ci ratio: 2.771858e+00	ci left: 6.190173e-09	ci right 1.362259e-06	k: 1	n:4090000
FIP1L1   4090000 perm   7547 sec   (542 perm/sec)   p_kst 2.444988e-07   p_cons 9.979024e-01   p_joint 1.711491e-06

Joint ci ratio: 1.385928e+00	ci left: 6.864303e-07	ci right 3.517723e-06	k: 7	n:4100000
Cons ci ratio: 8.874241e-05	ci left: 9.978587e-01	ci right 9.979475e-01	k: 4091404	n:4100000
KS ci ratio: 2.771858e+00	ci left: 6.175075e-09	ci right 1.358937e-06	k: 1	n:4100000
FIP1L1   4100000 perm   7580 sec   (541 perm/sec)   p_kst 2.439024e-07   p_cons 9.979034e-01   p_joint 1.707317e-06

Joint ci ratio: 1.385928e+00	ci left: 6.847601e-07	ci right 3.509164e-06	k: 7	n:4110000
Cons ci ratio: 8.861393e-05	ci left: 9.978597e-01	ci right 9.979484e-01	k: 4101387	n:4110000
KS ci ratio: 2.771858e+00	ci left: 6.160051e-09	ci right 1.355630e-06	k: 1	n:4110000
FIP1L1   4110000 perm   7612 sec   (540 perm/sec)   p_kst 2.433090e-07   p_cons 9.979044e-01   p_joint 1.703163e-06

Joint ci ratio: 1.385928e+00	ci left: 6.830981e-07	ci right 3.500646e-06	k: 7	n:4120000
Cons ci ratio: 8.851681e-05	ci left: 9.978592e-01	ci right 9.979478e-01	k: 4111364	n:4120000
KS ci ratio: 2.771858e+00	ci left: 6.145099e-09	ci right 1.352340e-06	k: 1	n:4120000
FIP1L1   4120000 perm   7644 sec   (539 perm/sec)   p_kst 2.427184e-07   p_cons 9.979039e-01   p_joint 1.699029e-06

Joint ci ratio: 1.385928e+00	ci left: 6.814441e-07	ci right 3.492170e-06	k: 7	n:4130000
Cons ci ratio: 8.837394e-05	ci left: 9.978610e-01	ci right 9.979494e-01	k: 4121350	n:4130000
KS ci ratio: 2.771858e+00	ci left: 6.130220e-09	ci right 1.349065e-06	k: 1	n:4130000
FIP1L1   4130000 perm   7677 sec   (538 perm/sec)   p_kst 2.421308e-07   p_cons 9.979056e-01   p_joint 1.694915e-06

Joint ci ratio: 1.385928e+00	ci left: 6.797981e-07	ci right 3.483735e-06	k: 7	n:4140000
Cons ci ratio: 8.826742e-05	ci left: 9.978610e-01	ci right 9.979494e-01	k: 4131329	n:4140000
KS ci ratio: 2.771858e+00	ci left: 6.115413e-09	ci right 1.345807e-06	k: 1	n:4140000
FIP1L1   4140000 perm   7709 sec   (537 perm/sec)   p_kst 2.415459e-07   p_cons 9.979056e-01   p_joint 1.690821e-06

Joint ci ratio: 1.385928e+00	ci left: 6.781600e-07	ci right 3.475340e-06	k: 7	n:4150000
Cons ci ratio: 8.813079e-05	ci left: 9.978625e-01	ci right 9.979507e-01	k: 4141314	n:4150000
KS ci ratio: 2.771858e+00	ci left: 6.100677e-09	ci right 1.342564e-06	k: 1	n:4150000
FIP1L1   4150000 perm   7742 sec   (536 perm/sec)   p_kst 2.409639e-07   p_cons 9.979070e-01   p_joint 1.686747e-06

Joint ci ratio: 1.385928e+00	ci left: 6.765298e-07	ci right 3.466986e-06	k: 7	n:4160000
Cons ci ratio: 8.802514e-05	ci left: 9.978626e-01	ci right 9.979507e-01	k: 4151293	n:4160000
KS ci ratio: 2.771858e+00	ci left: 6.086011e-09	ci right 1.339337e-06	k: 1	n:4160000
FIP1L1   4160000 perm   7774 sec   (535 perm/sec)   p_kst 2.403846e-07   p_cons 9.979070e-01   p_joint 1.682692e-06

Joint ci ratio: 1.385928e+00	ci left: 6.749075e-07	ci right 3.458672e-06	k: 7	n:4170000
Cons ci ratio: 8.797032e-05	ci left: 9.978602e-01	ci right 9.979482e-01	k: 4161262	n:4170000
KS ci ratio: 2.771858e+00	ci left: 6.071417e-09	ci right 1.336125e-06	k: 1	n:4170000
FIP1L1   4170000 perm   7807 sec   (534 perm/sec)   p_kst 2.398082e-07   p_cons 9.979046e-01   p_joint 1.678657e-06

Joint ci ratio: 1.385928e+00	ci left: 6.732929e-07	ci right 3.450398e-06	k: 7	n:4180000
Cons ci ratio: 8.784514e-05	ci left: 9.978612e-01	ci right 9.979491e-01	k: 4171245	n:4180000
KS ci ratio: 2.771858e+00	ci left: 6.056892e-09	ci right 1.332928e-06	k: 1	n:4180000
FIP1L1   4180000 perm   7840 sec   (533 perm/sec)   p_kst 2.392344e-07   p_cons 9.979055e-01   p_joint 1.674641e-06

Joint ci ratio: 1.385928e+00	ci left: 6.716859e-07	ci right 3.442163e-06	k: 7	n:4190000
Cons ci ratio: 8.775554e-05	ci left: 9.978605e-01	ci right 9.979483e-01	k: 4181221	n:4190000
KS ci ratio: 2.771858e+00	ci left: 6.042436e-09	ci right 1.329747e-06	k: 1	n:4190000
FIP1L1   4190000 perm   7873 sec   (532 perm/sec)   p_kst 2.386635e-07   p_cons 9.979048e-01   p_joint 1.670644e-06

Joint ci ratio: 1.385928e+00	ci left: 6.700867e-07	ci right 3.433967e-06	k: 7	n:4200000
Cons ci ratio: 8.764624e-05	ci left: 9.978608e-01	ci right 9.979485e-01	k: 4191201	n:4200000
KS ci ratio: 2.771858e+00	ci left: 6.028049e-09	ci right 1.326581e-06	k: 1	n:4200000
FIP1L1   4200000 perm   7906 sec   (531 perm/sec)   p_kst 2.380952e-07   p_cons 9.979050e-01   p_joint 1.666667e-06

Joint ci ratio: 1.385928e+00	ci left: 6.684950e-07	ci right 3.425811e-06	k: 7	n:4210000
Cons ci ratio: 8.751746e-05	ci left: 9.978620e-01	ci right 9.979496e-01	k: 4201185	n:4210000
KS ci ratio: 2.771858e+00	ci left: 6.013731e-09	ci right 1.323430e-06	k: 1	n:4210000
FIP1L1   4210000 perm   7939 sec   (530 perm/sec)   p_kst 2.375297e-07   p_cons 9.979062e-01   p_joint 1.662708e-06

Joint ci ratio: 1.385928e+00	ci left: 6.669109e-07	ci right 3.417693e-06	k: 7	n:4220000
Cons ci ratio: 8.745859e-05	ci left: 9.978599e-01	ci right 9.979474e-01	k: 4211155	n:4220000
KS ci ratio: 2.771858e+00	ci left: 5.999481e-09	ci right 1.320294e-06	k: 1	n:4220000
FIP1L1   4220000 perm   7972 sec   (529 perm/sec)   p_kst 2.369668e-07   p_cons 9.979040e-01   p_joint 1.658768e-06

Joint ci ratio: 1.385928e+00	ci left: 6.653343e-07	ci right 3.409613e-06	k: 7	n:4230000
Cons ci ratio: 8.738002e-05	ci left: 9.978588e-01	ci right 9.979462e-01	k: 4221129	n:4230000
KS ci ratio: 2.771858e+00	ci left: 5.985298e-09	ci right 1.317173e-06	k: 1	n:4230000
FIP1L1   4230000 perm   8007 sec   (528 perm/sec)   p_kst 2.364066e-07   p_cons 9.979028e-01   p_joint 1.654846e-06

Joint ci ratio: 1.385928e+00	ci left: 6.637651e-07	ci right 3.401571e-06	k: 7	n:4240000
Cons ci ratio: 8.725245e-05	ci left: 9.978600e-01	ci right 9.979473e-01	k: 4231113	n:4240000
KS ci ratio: 2.771858e+00	ci left: 5.971181e-09	ci right 1.314066e-06	k: 1	n:4240000
FIP1L1   4240000 perm   8041 sec   (527 perm/sec)   p_kst 2.358491e-07   p_cons 9.979040e-01   p_joint 1.650943e-06

Joint ci ratio: 1.385928e+00	ci left: 6.622033e-07	ci right 3.393568e-06	k: 7	n:4250000
Cons ci ratio: 8.714993e-05	ci left: 9.978601e-01	ci right 9.979473e-01	k: 4241092	n:4250000
KS ci ratio: 2.771858e+00	ci left: 5.957131e-09	ci right 1.310974e-06	k: 1	n:4250000
FIP1L1   4250000 perm   8075 sec   (526 perm/sec)   p_kst 2.352941e-07   p_cons 9.979040e-01   p_joint 1.647059e-06

Joint ci ratio: 1.385928e+00	ci left: 6.606489e-07	ci right 3.385602e-06	k: 7	n:4260000
Cons ci ratio: 8.707218e-05	ci left: 9.978589e-01	ci right 9.979460e-01	k: 4251066	n:4260000
KS ci ratio: 2.771858e+00	ci left: 5.943147e-09	ci right 1.307897e-06	k: 1	n:4260000
FIP1L1   4260000 perm   8110 sec   (525 perm/sec)   p_kst 2.347418e-07   p_cons 9.979028e-01   p_joint 1.643192e-06

Joint ci ratio: 1.385928e+00	ci left: 6.591017e-07	ci right 3.377673e-06	k: 7	n:4270000
Cons ci ratio: 8.698488e-05	ci left: 9.978583e-01	ci right 9.979453e-01	k: 4261042	n:4270000
KS ci ratio: 2.771858e+00	ci left: 5.929229e-09	ci right 1.304834e-06	k: 1	n:4270000
FIP1L1   4270000 perm   8144 sec   (524 perm/sec)   p_kst 2.341920e-07   p_cons 9.979021e-01   p_joint 1.639344e-06

Joint ci ratio: 1.385928e+00	ci left: 6.575617e-07	ci right 3.369781e-06	k: 7	n:4280000
Cons ci ratio: 8.687360e-05	ci left: 9.978588e-01	ci right 9.979457e-01	k: 4271023	n:4280000
KS ci ratio: 2.771858e+00	ci left: 5.915376e-09	ci right 1.301785e-06	k: 1	n:4280000
FIP1L1   4280000 perm   8179 sec   (523 perm/sec)   p_kst 2.336449e-07   p_cons 9.979026e-01   p_joint 1.635514e-06

Joint ci ratio: 1.385928e+00	ci left: 6.560289e-07	ci right 3.361926e-06	k: 7	n:4290000
Cons ci ratio: 8.677724e-05	ci left: 9.978586e-01	ci right 9.979454e-01	k: 4281001	n:4290000
KS ci ratio: 2.771858e+00	ci left: 5.901587e-09	ci right 1.298751e-06	k: 1	n:4290000
FIP1L1   4290000 perm   8214 sec   (522 perm/sec)   p_kst 2.331002e-07   p_cons 9.979023e-01   p_joint 1.631702e-06

Joint ci ratio: 1.385928e+00	ci left: 6.545033e-07	ci right 3.354108e-06	k: 7	n:4300000
Cons ci ratio: 8.665711e-05	ci left: 9.978596e-01	ci right 9.979463e-01	k: 4290984	n:4300000
KS ci ratio: 2.771858e+00	ci left: 5.887862e-09	ci right 1.295730e-06	k: 1	n:4300000
FIP1L1   4300000 perm   8248 sec   (521 perm/sec)   p_kst 2.325581e-07   p_cons 9.979033e-01   p_joint 1.627907e-06

Joint ci ratio: 1.385928e+00	ci left: 6.529847e-07	ci right 3.346326e-06	k: 7	n:4310000
Cons ci ratio: 8.660944e-05	ci left: 9.978570e-01	ci right 9.979437e-01	k: 4300952	n:4310000
KS ci ratio: 2.771858e+00	ci left: 5.874201e-09	ci right 1.292724e-06	k: 1	n:4310000
FIP1L1   4310000 perm   8283 sec   (520 perm/sec)   p_kst 2.320186e-07   p_cons 9.979007e-01   p_joint 1.624130e-06

Joint ci ratio: 1.385928e+00	ci left: 6.514732e-07	ci right 3.338579e-06	k: 7	n:4320000
Cons ci ratio: 8.652350e-05	ci left: 9.978564e-01	ci right 9.979429e-01	k: 4310928	n:4320000
KS ci ratio: 2.771858e+00	ci left: 5.860604e-09	ci right 1.289732e-06	k: 1	n:4320000
FIP1L1   4320000 perm   8318 sec   (519 perm/sec)   p_kst 2.314815e-07   p_cons 9.979000e-01   p_joint 1.620370e-06

Joint ci ratio: 1.385928e+00	ci left: 6.499686e-07	ci right 3.330869e-06	k: 7	n:4330000
Cons ci ratio: 8.643304e-05	ci left: 9.978560e-01	ci right 9.979424e-01	k: 4320905	n:4330000
KS ci ratio: 2.771858e+00	ci left: 5.847069e-09	ci right 1.286753e-06	k: 1	n:4330000
FIP1L1   4330000 perm   8353 sec   (518 perm/sec)   p_kst 2.309469e-07   p_cons 9.978995e-01   p_joint 1.616628e-06

Joint ci ratio: 1.385928e+00	ci left: 6.484710e-07	ci right 3.323194e-06	k: 7	n:4340000
Cons ci ratio: 8.637132e-05	ci left: 9.978542e-01	ci right 9.979406e-01	k: 4330876	n:4340000
KS ci ratio: 2.771858e+00	ci left: 5.833596e-09	ci right 1.283788e-06	k: 1	n:4340000
FIP1L1   4340000 perm   8388 sec   (517 perm/sec)   p_kst 2.304147e-07   p_cons 9.978977e-01   p_joint 1.612903e-06

Joint ci ratio: 1.385928e+00	ci left: 6.469802e-07	ci right 3.315555e-06	k: 7	n:4350000
Cons ci ratio: 8.630495e-05	ci left: 9.978526e-01	ci right 9.979389e-01	k: 4340848	n:4350000
KS ci ratio: 2.771858e+00	ci left: 5.820186e-09	ci right 1.280837e-06	k: 1	n:4350000
FIP1L1   4350000 perm   8423 sec   (516 perm/sec)   p_kst 2.298851e-07   p_cons 9.978961e-01   p_joint 1.609195e-06

Joint ci ratio: 1.385928e+00	ci left: 6.454963e-07	ci right 3.307950e-06	k: 7	n:4360000
Cons ci ratio: 8.625279e-05	ci left: 9.978503e-01	ci right 9.979366e-01	k: 4350817	n:4360000
KS ci ratio: 2.771858e+00	ci left: 5.806837e-09	ci right 1.277899e-06	k: 1	n:4360000
FIP1L1   4360000 perm   8458 sec   (515 perm/sec)   p_kst 2.293578e-07   p_cons 9.978938e-01   p_joint 1.605505e-06

Joint ci ratio: 1.385928e+00	ci left: 6.440192e-07	ci right 3.300381e-06	k: 7	n:4370000
Cons ci ratio: 8.614437e-05	ci left: 9.978509e-01	ci right 9.979370e-01	k: 4360798	n:4370000
KS ci ratio: 2.771858e+00	ci left: 5.793549e-09	ci right 1.274975e-06	k: 1	n:4370000
FIP1L1   4370000 perm   8493 sec   (515 perm/sec)   p_kst 2.288330e-07   p_cons 9.978943e-01   p_joint 1.601831e-06

Joint ci ratio: 1.385928e+00	ci left: 6.425489e-07	ci right 3.292845e-06	k: 7	n:4380000
Cons ci ratio: 8.604102e-05	ci left: 9.978511e-01	ci right 9.979372e-01	k: 4370778	n:4380000
KS ci ratio: 2.771858e+00	ci left: 5.780321e-09	ci right 1.272064e-06	k: 1	n:4380000
FIP1L1   4380000 perm   8529 sec   (514 perm/sec)   p_kst 2.283105e-07   p_cons 9.978945e-01   p_joint 1.598174e-06

Joint ci ratio: 1.385928e+00	ci left: 6.410852e-07	ci right 3.285345e-06	k: 7	n:4390000
Cons ci ratio: 8.595667e-05	ci left: 9.978505e-01	ci right 9.979365e-01	k: 4380754	n:4390000
KS ci ratio: 2.771858e+00	ci left: 5.767154e-09	ci right 1.269166e-06	k: 1	n:4390000
FIP1L1   4390000 perm   8564 sec   (513 perm/sec)   p_kst 2.277904e-07   p_cons 9.978938e-01   p_joint 1.594533e-06

Joint ci ratio: 1.385928e+00	ci left: 6.396282e-07	ci right 3.277878e-06	k: 7	n:4400000
Cons ci ratio: 8.584936e-05	ci left: 9.978510e-01	ci right 9.979369e-01	k: 4390735	n:4400000
KS ci ratio: 2.771858e+00	ci left: 5.754047e-09	ci right 1.266282e-06	k: 1	n:4400000
FIP1L1   4400000 perm   8600 sec   (512 perm/sec)   p_kst 2.272727e-07   p_cons 9.978943e-01   p_joint 1.590909e-06

Joint ci ratio: 1.385928e+00	ci left: 6.381778e-07	ci right 3.270445e-06	k: 7	n:4410000
Cons ci ratio: 8.577020e-05	ci left: 9.978502e-01	ci right 9.979360e-01	k: 4400710	n:4410000
KS ci ratio: 2.771858e+00	ci left: 5.741000e-09	ci right 1.263411e-06	k: 1	n:4410000
FIP1L1   4410000 perm   8636 sec   (511 perm/sec)   p_kst 2.267574e-07   p_cons 9.978934e-01   p_joint 1.587302e-06

Joint ci ratio: 1.385928e+00	ci left: 6.367340e-07	ci right 3.263046e-06	k: 7	n:4420000
Cons ci ratio: 8.567742e-05	ci left: 9.978500e-01	ci right 9.979357e-01	k: 4410688	n:4420000
KS ci ratio: 2.771858e+00	ci left: 5.728011e-09	ci right 1.260552e-06	k: 1	n:4420000
FIP1L1   4420000 perm   8671 sec   (510 perm/sec)   p_kst 2.262443e-07   p_cons 9.978932e-01   p_joint 1.583710e-06

Joint ci ratio: 1.385928e+00	ci left: 6.352966e-07	ci right 3.255680e-06	k: 7	n:4430000
Cons ci ratio: 8.559871e-05	ci left: 9.978492e-01	ci right 9.979348e-01	k: 4420663	n:4430000
KS ci ratio: 2.771858e+00	ci left: 5.715081e-09	ci right 1.257707e-06	k: 1	n:4430000
FIP1L1   4430000 perm   8713 sec   (508 perm/sec)   p_kst 2.257336e-07   p_cons 9.978923e-01   p_joint 1.580135e-06

Joint ci ratio: 1.385928e+00	ci left: 6.338658e-07	ci right 3.248348e-06	k: 7	n:4440000
Cons ci ratio: 8.547901e-05	ci left: 9.978504e-01	ci right 9.979359e-01	k: 4430647	n:4440000
KS ci ratio: 2.771858e+00	ci left: 5.702209e-09	ci right 1.254874e-06	k: 1	n:4440000
FIP1L1   4440000 perm   8754 sec   (507 perm/sec)   p_kst 2.252252e-07   p_cons 9.978935e-01   p_joint 1.576577e-06

Joint ci ratio: 1.385928e+00	ci left: 6.324414e-07	ci right 3.241048e-06	k: 7	n:4450000
Cons ci ratio: 8.541454e-05	ci left: 9.978489e-01	ci right 9.979343e-01	k: 4440619	n:4450000
KS ci ratio: 2.771858e+00	ci left: 5.689395e-09	ci right 1.252054e-06	k: 1	n:4450000
FIP1L1   4450000 perm   8800 sec   (506 perm/sec)   p_kst 2.247191e-07   p_cons 9.978919e-01   p_joint 1.573034e-06

Joint ci ratio: 1.385928e+00	ci left: 6.310233e-07	ci right 3.233781e-06	k: 7	n:4460000
Cons ci ratio: 8.530017e-05	ci left: 9.978498e-01	ci right 9.979352e-01	k: 4450602	n:4460000
KS ci ratio: 2.771858e+00	ci left: 5.676638e-09	ci right 1.249247e-06	k: 1	n:4460000
FIP1L1   4460000 perm   8837 sec   (505 perm/sec)   p_kst 2.242152e-07   p_cons 9.978928e-01   p_joint 1.569507e-06

Joint ci ratio: 1.385928e+00	ci left: 6.296116e-07	ci right 3.226547e-06	k: 7	n:4470000
Cons ci ratio: 8.523608e-05	ci left: 9.978483e-01	ci right 9.979336e-01	k: 4460574	n:4470000
KS ci ratio: 2.771858e+00	ci left: 5.663939e-09	ci right 1.246452e-06	k: 1	n:4470000
FIP1L1   4470000 perm   8889 sec   (503 perm/sec)   p_kst 2.237136e-07   p_cons 9.978913e-01   p_joint 1.565996e-06

Joint ci ratio: 1.385928e+00	ci left: 6.282063e-07	ci right 3.219345e-06	k: 7	n:4480000
Cons ci ratio: 8.514501e-05	ci left: 9.978482e-01	ci right 9.979333e-01	k: 4470552	n:4480000
KS ci ratio: 2.771858e+00	ci left: 5.651297e-09	ci right 1.243670e-06	k: 1	n:4480000
FIP1L1   4480000 perm   8927 sec   (502 perm/sec)   p_kst 2.232143e-07   p_cons 9.978911e-01   p_joint 1.562500e-06

Joint ci ratio: 1.385928e+00	ci left: 6.268071e-07	ci right 3.212174e-06	k: 7	n:4490000
Cons ci ratio: 8.505873e-05	ci left: 9.978478e-01	ci right 9.979329e-01	k: 4480529	n:4490000
KS ci ratio: 2.771858e+00	ci left: 5.638710e-09	ci right 1.240900e-06	k: 1	n:4490000
FIP1L1   4490000 perm   8964 sec   (501 perm/sec)   p_kst 2.227171e-07   p_cons 9.978906e-01   p_joint 1.559020e-06

Joint ci ratio: 1.385928e+00	ci left: 6.254142e-07	ci right 3.205036e-06	k: 7	n:4500000
Cons ci ratio: 8.501306e-05	ci left: 9.978454e-01	ci right 9.979304e-01	k: 4490497	n:4500000
KS ci ratio: 2.771858e+00	ci left: 5.626179e-09	ci right 1.238142e-06	k: 1	n:4500000
FIP1L1   4500000 perm   9001 sec   (500 perm/sec)   p_kst 2.222222e-07   p_cons 9.978882e-01   p_joint 1.555556e-06

Joint ci ratio: 1.385928e+00	ci left: 6.240275e-07	ci right 3.197930e-06	k: 7	n:4510000
Cons ci ratio: 8.490482e-05	ci left: 9.978461e-01	ci right 9.979311e-01	k: 4500479	n:4510000
KS ci ratio: 2.771858e+00	ci left: 5.613705e-09	ci right 1.235397e-06	k: 1	n:4510000
FIP1L1   4510000 perm   9038 sec   (499 perm/sec)   p_kst 2.217295e-07   p_cons 9.978889e-01   p_joint 1.552106e-06

Joint ci ratio: 1.306665e+00	ci left: 7.641225e-07	ci right 3.487428e-06	k: 8	n:4520000
Cons ci ratio: 8.485931e-05	ci left: 9.978437e-01	ci right 9.979286e-01	k: 4510447	n:4520000
KS ci ratio: 2.771858e+00	ci left: 5.601285e-09	ci right 1.232664e-06	k: 1	n:4520000
FIP1L1   4520000 perm   9076 sec   (498 perm/sec)   p_kst 2.212389e-07   p_cons 9.978865e-01   p_joint 1.769912e-06

Joint ci ratio: 1.306665e+00	ci left: 7.624357e-07	ci right 3.479730e-06	k: 8	n:4530000
Cons ci ratio: 8.476942e-05	ci left: 9.978436e-01	ci right 9.979284e-01	k: 4520425	n:4530000
KS ci ratio: 2.771858e+00	ci left: 5.588920e-09	ci right 1.229943e-06	k: 1	n:4530000
FIP1L1   4530000 perm   9113 sec   (497 perm/sec)   p_kst 2.207506e-07   p_cons 9.978863e-01   p_joint 1.766004e-06

Joint ci ratio: 1.306665e+00	ci left: 7.607563e-07	ci right 3.472065e-06	k: 8	n:4540000
Cons ci ratio: 8.467097e-05	ci left: 9.978439e-01	ci right 9.979286e-01	k: 4530405	n:4540000
KS ci ratio: 2.771858e+00	ci left: 5.576610e-09	ci right 1.227234e-06	k: 1	n:4540000
FIP1L1   4540000 perm   9150 sec   (496 perm/sec)   p_kst 2.202643e-07   p_cons 9.978866e-01   p_joint 1.762115e-06

Joint ci ratio: 1.306665e+00	ci left: 7.590843e-07	ci right 3.464434e-06	k: 8	n:4550000
Cons ci ratio: 8.459931e-05	ci left: 9.978429e-01	ci right 9.979275e-01	k: 4540379	n:4550000
KS ci ratio: 2.771858e+00	ci left: 5.564354e-09	ci right 1.224536e-06	k: 1	n:4550000
FIP1L1   4550000 perm   9189 sec   (495 perm/sec)   p_kst 2.197802e-07   p_cons 9.978855e-01   p_joint 1.758242e-06

Joint ci ratio: 1.306665e+00	ci left: 7.574196e-07	ci right 3.456837e-06	k: 8	n:4560000
Cons ci ratio: 8.450146e-05	ci left: 9.978432e-01	ci right 9.979277e-01	k: 4550359	n:4560000
KS ci ratio: 2.771858e+00	ci left: 5.552151e-09	ci right 1.221851e-06	k: 1	n:4560000
FIP1L1   4560000 perm   9226 sec   (494 perm/sec)   p_kst 2.192982e-07   p_cons 9.978857e-01   p_joint 1.754386e-06

Joint ci ratio: 1.306665e+00	ci left: 7.557623e-07	ci right 3.449273e-06	k: 8	n:4570000
Cons ci ratio: 8.439956e-05	ci left: 9.978437e-01	ci right 9.979281e-01	k: 4560340	n:4570000
KS ci ratio: 2.771858e+00	ci left: 5.540002e-09	ci right 1.219177e-06	k: 1	n:4570000
FIP1L1   4570000 perm   9263 sec   (493 perm/sec)   p_kst 2.188184e-07   p_cons 9.978862e-01   p_joint 1.750547e-06

Joint ci ratio: 1.306665e+00	ci left: 7.541121e-07	ci right 3.441741e-06	k: 8	n:4580000
Cons ci ratio: 8.431985e-05	ci left: 9.978431e-01	ci right 9.979275e-01	k: 4570316	n:4580000
KS ci ratio: 2.771858e+00	ci left: 5.527906e-09	ci right 1.216515e-06	k: 1	n:4580000
FIP1L1   4580000 perm   9302 sec   (492 perm/sec)   p_kst 2.183406e-07   p_cons 9.978856e-01   p_joint 1.746725e-06

Joint ci ratio: 1.306665e+00	ci left: 7.524692e-07	ci right 3.434243e-06	k: 8	n:4590000
Cons ci ratio: 8.423601e-05	ci left: 9.978427e-01	ci right 9.979270e-01	k: 4580293	n:4590000
KS ci ratio: 2.771858e+00	ci left: 5.515862e-09	ci right 1.213865e-06	k: 1	n:4590000
FIP1L1   4590000 perm   9339 sec   (491 perm/sec)   p_kst 2.178649e-07   p_cons 9.978852e-01   p_joint 1.742919e-06

Joint ci ratio: 1.306665e+00	ci left: 7.508334e-07	ci right 3.426777e-06	k: 8	n:4600000
Cons ci ratio: 8.412208e-05	ci left: 9.978439e-01	ci right 9.979281e-01	k: 4590277	n:4600000
KS ci ratio: 2.771858e+00	ci left: 5.503871e-09	ci right 1.211226e-06	k: 1	n:4600000
FIP1L1   4600000 perm   9377 sec   (491 perm/sec)   p_kst 2.173913e-07   p_cons 9.978863e-01   p_joint 1.739130e-06

Joint ci ratio: 1.306665e+00	ci left: 7.492047e-07	ci right 3.419344e-06	k: 8	n:4610000
Cons ci ratio: 8.400858e-05	ci left: 9.978451e-01	ci right 9.979291e-01	k: 4600261	n:4610000
KS ci ratio: 2.771858e+00	ci left: 5.491932e-09	ci right 1.208599e-06	k: 1	n:4610000
FIP1L1   4610000 perm   9416 sec   (490 perm/sec)   p_kst 2.169197e-07   p_cons 9.978874e-01   p_joint 1.735358e-06

Joint ci ratio: 1.306665e+00	ci left: 7.475830e-07	ci right 3.411943e-06	k: 8	n:4620000
Cons ci ratio: 8.390845e-05	ci left: 9.978456e-01	ci right 9.979295e-01	k: 4610242	n:4620000
KS ci ratio: 2.771858e+00	ci left: 5.480045e-09	ci right 1.205983e-06	k: 1	n:4620000
FIP1L1   4620000 perm   9453 sec   (489 perm/sec)   p_kst 2.164502e-07   p_cons 9.978879e-01   p_joint 1.731602e-06

Joint ci ratio: 1.306665e+00	ci left: 7.459684e-07	ci right 3.404574e-06	k: 8	n:4630000
Cons ci ratio: 8.384302e-05	ci left: 9.978444e-01	ci right 9.979282e-01	k: 4620215	n:4630000
KS ci ratio: 2.771858e+00	ci left: 5.468209e-09	ci right 1.203378e-06	k: 1	n:4630000
FIP1L1   4630000 perm   9491 sec   (488 perm/sec)   p_kst 2.159827e-07   p_cons 9.978866e-01   p_joint 1.727862e-06

Joint ci ratio: 1.306665e+00	ci left: 7.443607e-07	ci right 3.397236e-06	k: 8	n:4640000
Cons ci ratio: 8.372636e-05	ci left: 9.978457e-01	ci right 9.979295e-01	k: 4630200	n:4640000
KS ci ratio: 2.771858e+00	ci left: 5.456424e-09	ci right 1.200785e-06	k: 1	n:4640000
FIP1L1   4640000 perm   9529 sec   (487 perm/sec)   p_kst 2.155172e-07   p_cons 9.978879e-01   p_joint 1.724138e-06

Joint ci ratio: 1.306665e+00	ci left: 7.427599e-07	ci right 3.389930e-06	k: 8	n:4650000
Cons ci ratio: 8.368268e-05	ci left: 9.978434e-01	ci right 9.979271e-01	k: 4640168	n:4650000
KS ci ratio: 2.771858e+00	ci left: 5.444690e-09	ci right 1.198202e-06	k: 1	n:4650000
FIP1L1   4650000 perm   9567 sec   (486 perm/sec)   p_kst 2.150538e-07   p_cons 9.978856e-01   p_joint 1.720430e-06

Joint ci ratio: 1.306665e+00	ci left: 7.411660e-07	ci right 3.382656e-06	k: 8	n:4660000
Cons ci ratio: 8.358797e-05	ci left: 9.978437e-01	ci right 9.979273e-01	k: 4650148	n:4660000
KS ci ratio: 2.771858e+00	ci left: 5.433006e-09	ci right 1.195631e-06	k: 1	n:4660000
FIP1L1   4660000 perm   9605 sec   (485 perm/sec)   p_kst 2.145923e-07   p_cons 9.978858e-01   p_joint 1.716738e-06

Joint ci ratio: 1.306665e+00	ci left: 7.395789e-07	ci right 3.375412e-06	k: 8	n:4670000
Cons ci ratio: 8.351900e-05	ci left: 9.978427e-01	ci right 9.979263e-01	k: 4660122	n:4670000
KS ci ratio: 2.771858e+00	ci left: 5.421372e-09	ci right 1.193071e-06	k: 1	n:4670000
FIP1L1   4670000 perm   9643 sec   (484 perm/sec)   p_kst 2.141328e-07   p_cons 9.978848e-01   p_joint 1.713062e-06

Joint ci ratio: 1.306665e+00	ci left: 7.379986e-07	ci right 3.368200e-06	k: 8	n:4680000
Cons ci ratio: 8.342063e-05	ci left: 9.978432e-01	ci right 9.979267e-01	k: 4670103	n:4680000
KS ci ratio: 2.771858e+00	ci left: 5.409788e-09	ci right 1.190522e-06	k: 1	n:4680000
FIP1L1   4680000 perm   9681 sec   (483 perm/sec)   p_kst 2.136752e-07   p_cons 9.978853e-01   p_joint 1.709402e-06

Joint ci ratio: 1.306665e+00	ci left: 7.364250e-07	ci right 3.361018e-06	k: 8	n:4690000
Cons ci ratio: 8.330575e-05	ci left: 9.978446e-01	ci right 9.979279e-01	k: 4680088	n:4690000
KS ci ratio: 2.771858e+00	ci left: 5.398253e-09	ci right 1.187983e-06	k: 1	n:4690000
FIP1L1   4690000 perm   9719 sec   (483 perm/sec)   p_kst 2.132196e-07   p_cons 9.978866e-01   p_joint 1.705757e-06

Joint ci ratio: 1.306665e+00	ci left: 7.348582e-07	ci right 3.353867e-06	k: 8	n:4700000
Cons ci ratio: 8.319972e-05	ci left: 9.978455e-01	ci right 9.979288e-01	k: 4690071	n:4700000
KS ci ratio: 2.771858e+00	ci left: 5.386768e-09	ci right 1.185455e-06	k: 1	n:4700000
FIP1L1   4700000 perm   9756 sec   (482 perm/sec)   p_kst 2.127660e-07   p_cons 9.978874e-01   p_joint 1.702128e-06

Joint ci ratio: 1.306665e+00	ci left: 7.332980e-07	ci right 3.346747e-06	k: 8	n:4710000
Cons ci ratio: 8.309408e-05	ci left: 9.978465e-01	ci right 9.979296e-01	k: 4700054	n:4710000
KS ci ratio: 2.771858e+00	ci left: 5.375331e-09	ci right 1.182939e-06	k: 1	n:4710000
FIP1L1   4710000 perm   9795 sec   (481 perm/sec)   p_kst 2.123142e-07   p_cons 9.978883e-01   p_joint 1.698514e-06

Joint ci ratio: 1.306665e+00	ci left: 7.317444e-07	ci right 3.339656e-06	k: 8	n:4720000
Cons ci ratio: 8.300134e-05	ci left: 9.978467e-01	ci right 9.979298e-01	k: 4710034	n:4720000
KS ci ratio: 2.771858e+00	ci left: 5.363942e-09	ci right 1.180432e-06	k: 1	n:4720000
FIP1L1   4720000 perm   9833 sec   (480 perm/sec)   p_kst 2.118644e-07   p_cons 9.978886e-01   p_joint 1.694915e-06

Joint ci ratio: 1.306665e+00	ci left: 7.301973e-07	ci right 3.332595e-06	k: 8	n:4730000
Cons ci ratio: 8.290475e-05	ci left: 9.978472e-01	ci right 9.979302e-01	k: 4720015	n:4730000
KS ci ratio: 2.771858e+00	ci left: 5.352602e-09	ci right 1.177937e-06	k: 1	n:4730000
FIP1L1   4730000 perm   9872 sec   (479 perm/sec)   p_kst 2.114165e-07   p_cons 9.978890e-01   p_joint 1.691332e-06

Joint ci ratio: 1.306665e+00	ci left: 7.286569e-07	ci right 3.325565e-06	k: 8	n:4740000
Cons ci ratio: 8.279605e-05	ci left: 9.978484e-01	ci right 9.979312e-01	k: 4729999	n:4740000
KS ci ratio: 2.771858e+00	ci left: 5.341310e-09	ci right 1.175452e-06	k: 1	n:4740000
FIP1L1   4740000 perm   9911 sec   (478 perm/sec)   p_kst 2.109705e-07   p_cons 9.978901e-01   p_joint 1.687764e-06

Joint ci ratio: 1.306665e+00	ci left: 7.271228e-07	ci right 3.318563e-06	k: 8	n:4750000
Cons ci ratio: 8.271257e-05	ci left: 9.978482e-01	ci right 9.979310e-01	k: 4739977	n:4750000
KS ci ratio: 2.771858e+00	ci left: 5.330065e-09	ci right 1.172977e-06	k: 1	n:4750000
FIP1L1   4750000 perm   9950 sec   (477 perm/sec)   p_kst 2.105263e-07   p_cons 9.978899e-01   p_joint 1.684211e-06

Joint ci ratio: 1.306665e+00	ci left: 7.255953e-07	ci right 3.311592e-06	k: 8	n:4760000
Cons ci ratio: 8.266230e-05	ci left: 9.978464e-01	ci right 9.979291e-01	k: 4749947	n:4760000
KS ci ratio: 2.771858e+00	ci left: 5.318867e-09	ci right 1.170513e-06	k: 1	n:4760000
FIP1L1   4760000 perm   9990 sec   (476 perm/sec)   p_kst 2.100840e-07   p_cons 9.978880e-01   p_joint 1.680672e-06

Joint ci ratio: 1.306665e+00	ci left: 7.240741e-07	ci right 3.304649e-06	k: 8	n:4770000
Cons ci ratio: 8.253813e-05	ci left: 9.978483e-01	ci right 9.979309e-01	k: 4759935	n:4770000
KS ci ratio: 2.771858e+00	ci left: 5.307716e-09	ci right 1.168059e-06	k: 1	n:4770000
FIP1L1   4770000 perm   10028 sec   (476 perm/sec)   p_kst 2.096436e-07   p_cons 9.978899e-01   p_joint 1.677149e-06

Joint ci ratio: 1.306665e+00	ci left: 7.225593e-07	ci right 3.297736e-06	k: 8	n:4780000
Cons ci ratio: 8.245133e-05	ci left: 9.978484e-01	ci right 9.979309e-01	k: 4769914	n:4780000
KS ci ratio: 2.771858e+00	ci left: 5.296612e-09	ci right 1.165615e-06	k: 1	n:4780000
FIP1L1   4780000 perm   10067 sec   (475 perm/sec)   p_kst 2.092050e-07   p_cons 9.978900e-01   p_joint 1.673640e-06

Joint ci ratio: 1.306665e+00	ci left: 7.210508e-07	ci right 3.290851e-06	k: 8	n:4790000
Cons ci ratio: 8.234030e-05	ci left: 9.978497e-01	ci right 9.979321e-01	k: 4779899	n:4790000
KS ci ratio: 2.771858e+00	ci left: 5.285555e-09	ci right 1.163182e-06	k: 1	n:4790000
FIP1L1   4790000 perm   10106 sec   (474 perm/sec)   p_kst 2.087683e-07   p_cons 9.978912e-01   p_joint 1.670146e-06

Joint ci ratio: 1.306665e+00	ci left: 7.195486e-07	ci right 3.283995e-06	k: 8	n:4800000
Cons ci ratio: 8.222154e-05	ci left: 9.978515e-01	ci right 9.979337e-01	k: 4789886	n:4800000
KS ci ratio: 2.771858e+00	ci left: 5.274543e-09	ci right 1.160758e-06	k: 1	n:4800000
FIP1L1   4800000 perm   10145 sec   (473 perm/sec)   p_kst 2.083333e-07   p_cons 9.978929e-01   p_joint 1.666667e-06

Joint ci ratio: 1.306665e+00	ci left: 7.180527e-07	ci right 3.277168e-06	k: 8	n:4810000
Cons ci ratio: 8.212761e-05	ci left: 9.978520e-01	ci right 9.979341e-01	k: 4799867	n:4810000
KS ci ratio: 2.771858e+00	ci left: 5.263578e-09	ci right 1.158345e-06	k: 1	n:4810000
FIP1L1   4810000 perm   10183 sec   (472 perm/sec)   p_kst 2.079002e-07   p_cons 9.978933e-01   p_joint 1.663202e-06

Joint ci ratio: 1.306665e+00	ci left: 7.165630e-07	ci right 3.270369e-06	k: 8	n:4820000
Cons ci ratio: 8.205424e-05	ci left: 9.978514e-01	ci right 9.979335e-01	k: 4809843	n:4820000
KS ci ratio: 2.771858e+00	ci left: 5.252657e-09	ci right 1.155942e-06	k: 1	n:4820000
FIP1L1   4820000 perm   10222 sec   (472 perm/sec)   p_kst 2.074689e-07   p_cons 9.978927e-01   p_joint 1.659751e-06

Joint ci ratio: 1.306665e+00	ci left: 7.150794e-07	ci right 3.263598e-06	k: 8	n:4830000
Cons ci ratio: 8.198509e-05	ci left: 9.978506e-01	ci right 9.979326e-01	k: 4819818	n:4830000
KS ci ratio: 2.771858e+00	ci left: 5.241782e-09	ci right 1.153549e-06	k: 1	n:4830000
FIP1L1   4830000 perm   10262 sec   (471 perm/sec)   p_kst 2.070393e-07   p_cons 9.978919e-01   p_joint 1.656315e-06

Joint ci ratio: 1.306665e+00	ci left: 7.136020e-07	ci right 3.256855e-06	k: 8	n:4840000
Cons ci ratio: 8.190002e-05	ci left: 9.978507e-01	ci right 9.979326e-01	k: 4829797	n:4840000
KS ci ratio: 2.771858e+00	ci left: 5.230952e-09	ci right 1.151165e-06	k: 1	n:4840000
FIP1L1   4840000 perm   10301 sec   (470 perm/sec)   p_kst 2.066116e-07   p_cons 9.978919e-01   p_joint 1.652893e-06

Joint ci ratio: 1.306665e+00	ci left: 7.121306e-07	ci right 3.250140e-06	k: 8	n:4850000
Cons ci ratio: 8.179516e-05	ci left: 9.978518e-01	ci right 9.979336e-01	k: 4839781	n:4850000
KS ci ratio: 2.771858e+00	ci left: 5.220167e-09	ci right 1.148792e-06	k: 1	n:4850000
FIP1L1   4850000 perm   10340 sec   (469 perm/sec)   p_kst 2.061856e-07   p_cons 9.978930e-01   p_joint 1.649485e-06

Joint ci ratio: 1.306665e+00	ci left: 7.106653e-07	ci right 3.243452e-06	k: 8	n:4860000
Cons ci ratio: 8.171068e-05	ci left: 9.978518e-01	ci right 9.979336e-01	k: 4849760	n:4860000
KS ci ratio: 2.771858e+00	ci left: 5.209426e-09	ci right 1.146428e-06	k: 1	n:4860000
FIP1L1   4860000 perm   10380 sec   (468 perm/sec)   p_kst 2.057613e-07   p_cons 9.978930e-01   p_joint 1.646091e-06

Joint ci ratio: 1.306665e+00	ci left: 7.092060e-07	ci right 3.236792e-06	k: 8	n:4870000
Cons ci ratio: 8.163044e-05	ci left: 9.978517e-01	ci right 9.979333e-01	k: 4859738	n:4870000
KS ci ratio: 2.771858e+00	ci left: 5.198729e-09	ci right 1.144074e-06	k: 1	n:4870000
FIP1L1   4870000 perm   10419 sec   (467 perm/sec)   p_kst 2.053388e-07   p_cons 9.978928e-01   p_joint 1.642710e-06

Joint ci ratio: 1.306665e+00	ci left: 7.077528e-07	ci right 3.230159e-06	k: 8	n:4880000
Cons ci ratio: 8.155839e-05	ci left: 9.978511e-01	ci right 9.979327e-01	k: 4869714	n:4880000
KS ci ratio: 2.771858e+00	ci left: 5.188076e-09	ci right 1.141730e-06	k: 1	n:4880000
FIP1L1   4880000 perm   10459 sec   (467 perm/sec)   p_kst 2.049180e-07   p_cons 9.978922e-01   p_joint 1.639344e-06

Joint ci ratio: 1.306665e+00	ci left: 7.063054e-07	ci right 3.223554e-06	k: 8	n:4890000
Cons ci ratio: 8.143502e-05	ci left: 9.978532e-01	ci right 9.979347e-01	k: 4879703	n:4890000
KS ci ratio: 2.771858e+00	ci left: 5.177466e-09	ci right 1.139395e-06	k: 1	n:4890000
FIP1L1   4890000 perm   10498 sec   (466 perm/sec)   p_kst 2.044990e-07   p_cons 9.978943e-01   p_joint 1.635992e-06

Joint ci ratio: 1.306665e+00	ci left: 7.048640e-07	ci right 3.216975e-06	k: 8	n:4900000
Cons ci ratio: 8.136350e-05	ci left: 9.978527e-01	ci right 9.979341e-01	k: 4889679	n:4900000
KS ci ratio: 2.771858e+00	ci left: 5.166900e-09	ci right 1.137070e-06	k: 1	n:4900000
FIP1L1   4900000 perm   10538 sec   (465 perm/sec)   p_kst 2.040816e-07   p_cons 9.978937e-01   p_joint 1.632653e-06

Joint ci ratio: 1.306665e+00	ci left: 7.034284e-07	ci right 3.210423e-06	k: 8	n:4910000
Cons ci ratio: 8.126065e-05	ci left: 9.978538e-01	ci right 9.979351e-01	k: 4899663	n:4910000
KS ci ratio: 2.771858e+00	ci left: 5.156376e-09	ci right 1.134754e-06	k: 1	n:4910000
FIP1L1   4910000 perm   10578 sec   (464 perm/sec)   p_kst 2.036660e-07   p_cons 9.978947e-01   p_joint 1.629328e-06

Joint ci ratio: 1.306665e+00	ci left: 7.019987e-07	ci right 3.203898e-06	k: 8	n:4920000
Cons ci ratio: 8.116996e-05	ci left: 9.978542e-01	ci right 9.979354e-01	k: 4909644	n:4920000
KS ci ratio: 2.771858e+00	ci left: 5.145896e-09	ci right 1.132447e-06	k: 1	n:4920000
FIP1L1   4920000 perm   10617 sec   (463 perm/sec)   p_kst 2.032520e-07   p_cons 9.978951e-01   p_joint 1.626016e-06

Joint ci ratio: 1.306665e+00	ci left: 7.005747e-07	ci right 3.197399e-06	k: 8	n:4930000
Cons ci ratio: 8.106782e-05	ci left: 9.978553e-01	ci right 9.979364e-01	k: 4919628	n:4930000
KS ci ratio: 2.771858e+00	ci left: 5.135458e-09	ci right 1.130150e-06	k: 1	n:4930000
FIP1L1   4930000 perm   10658 sec   (463 perm/sec)   p_kst 2.028398e-07   p_cons 9.978961e-01   p_joint 1.622718e-06

Joint ci ratio: 1.306665e+00	ci left: 6.991566e-07	ci right 3.190926e-06	k: 8	n:4940000
Cons ci ratio: 8.100508e-05	ci left: 9.978543e-01	ci right 9.979354e-01	k: 4929602	n:4940000
KS ci ratio: 2.771858e+00	ci left: 5.125062e-09	ci right 1.127863e-06	k: 1	n:4940000
FIP1L1   4940000 perm   10698 sec   (462 perm/sec)   p_kst 2.024291e-07   p_cons 9.978951e-01   p_joint 1.619433e-06

Joint ci ratio: 1.306665e+00	ci left: 6.977441e-07	ci right 3.184480e-06	k: 8	n:4950000
Cons ci ratio: 8.091135e-05	ci left: 9.978550e-01	ci right 9.979359e-01	k: 4939584	n:4950000
KS ci ratio: 2.771858e+00	ci left: 5.114709e-09	ci right 1.125584e-06	k: 1	n:4950000
FIP1L1   4950000 perm   10738 sec   (461 perm/sec)   p_kst 2.020202e-07   p_cons 9.978958e-01   p_joint 1.616162e-06

Joint ci ratio: 1.239611e+00	ci left: 8.297126e-07	ci right 3.444514e-06	k: 9	n:4960000
Cons ci ratio: 8.082957e-05	ci left: 9.978550e-01	ci right 9.979359e-01	k: 4949563	n:4960000
KS ci ratio: 2.771858e+00	ci left: 5.104397e-09	ci right 1.123315e-06	k: 1	n:4960000
FIP1L1   4960000 perm   10779 sec   (460 perm/sec)   p_kst 2.016129e-07   p_cons 9.978958e-01   p_joint 1.814516e-06

Joint ci ratio: 1.239611e+00	ci left: 8.280432e-07	ci right 3.437583e-06	k: 9	n:4970000
Cons ci ratio: 8.072483e-05	ci left: 9.978563e-01	ci right 9.979371e-01	k: 4959548	n:4970000
KS ci ratio: 2.771858e+00	ci left: 5.094126e-09	ci right 1.121054e-06	k: 1	n:4970000
FIP1L1   4970000 perm   10819 sec   (459 perm/sec)   p_kst 2.012072e-07   p_cons 9.978970e-01   p_joint 1.810865e-06

Joint ci ratio: 1.239611e+00	ci left: 8.263805e-07	ci right 3.430681e-06	k: 9	n:4980000
Cons ci ratio: 8.065133e-05	ci left: 9.978560e-01	ci right 9.979366e-01	k: 4969525	n:4980000
KS ci ratio: 2.771858e+00	ci left: 5.083897e-09	ci right 1.118803e-06	k: 1	n:4980000
FIP1L1   4980000 perm   10860 sec   (459 perm/sec)   p_kst 2.008032e-07   p_cons 9.978966e-01   p_joint 1.807229e-06

Joint ci ratio: 1.481620e+00	ci left: 4.412615e-07	ci right 2.617127e-06	k: 6	n:4990000
Cons ci ratio: 8.055495e-05	ci left: 9.978568e-01	ci right 9.979374e-01	k: 4979508	n:4990000
KS ci ratio: 2.771858e+00	ci left: 5.073709e-09	ci right 1.116561e-06	k: 1	n:4990000
FIP1L1   4990000 perm   10900 sec   (458 perm/sec)   p_kst 2.004008e-07   p_cons 9.978974e-01   p_joint 1.202405e-06

Joint ci ratio: 1.481620e+00	ci left: 4.403790e-07	ci right 2.611893e-06	k: 6	n:5000000
Cons ci ratio: 8.048575e-05	ci left: 9.978563e-01	ci right 9.979368e-01	k: 4989484	n:5000000
KS ci ratio: 2.771858e+00	ci left: 5.063562e-09	ci right 1.114328e-06	k: 1	n:5000000
FIP1L1   5000000 perm   10941 sec   (457 perm/sec)   p_kst 2.000000e-07   p_cons 9.978968e-01   p_joint 1.200000e-06

Outputting figure to mutsig2_images.part000000000065/FIP1L1.3_1888_5000000_2e-07_0.9979_1.2e-06.png
                gene_name: FIP1L1
               theta_stop: 2.8 
                    nperm: 5000000 
                     p_ks: 2.00e-07 
        ci_ks_bounds_left: 5.06e-09 
       ci_ks_bounds_right: 1.11e-06 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1.20e-06 
     ci_joint_bounds_left: 4.40e-07 
    ci_joint_bounds_right: 2.61e-06 

Current progress: 14 percent done.
FGFR1OP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.579714e-01	ci left: 5.340171e-02	ci right 6.265786e-02	k: 579	n:10000
Cons ci ratio: 1.730584e-01	ci left: 4.456333e-02	ci right 5.310195e-02	k: 487	n:10000
KS ci ratio: 6.339341e-02	ci left: 2.677498e-01	ci right 2.853805e-01	k: 2765	n:10000
FGFR1OP2   10000 perm   1 sec   (6912 perm/sec)   p_kst 2.765000e-01   p_cons 4.870000e-02   p_joint 5.790000e-02

Joint ci ratio: 7.810667e-02	ci left: 1.074644e-01	ci right 1.162488e-01	k: 2236	n:20000
Cons ci ratio: 8.953869e-02	ci left: 8.352110e-02	ci right 9.139931e-02	k: 1748	n:20000
KS ci ratio: 4.478141e-02	ci left: 2.707560e-01	ci right 2.832089e-01	k: 5539	n:20000
FGFR1OP2   20000 perm   3 sec   (6047 perm/sec)   p_kst 2.769500e-01   p_cons 8.740000e-02   p_joint 1.118000e-01

Outputting figure to mutsig2_images.part000000000065/FGFR1OP2.2_795_20000_0.27695_0.0874_0.1118.png
                gene_name: FGFR1OP2
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 29 percent done.
FIGN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.998010e-03	ci left: 9.876314e-01	ci right 9.916757e-01	k: 9898	n:10000
Cons ci ratio: 5.803467e-02	ci left: 3.041153e-01	ci right 3.223936e-01	k: 3132	n:10000
KS ci ratio: 1.412697e-02	ci left: 8.786872e-01	ci right 8.912875e-01	k: 8851	n:10000
FIGN   10000 perm   2 sec   (6035 perm/sec)   p_kst 8.851000e-01   p_cons 3.132000e-01   p_joint 9.898000e-01

Outputting figure to mutsig2_images.part000000000065/FIGN.2_2288_10000_0.8851_0.3132_0.9898.png
                gene_name: FIGN
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 43 percent done.
FILIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.178537e-02	ci left: 2.780479e-01	ci right 2.958764e-01	k: 2869	n:10000
Cons ci ratio: 1.442098e-01	ci left: 6.381856e-02	ci right 7.383439e-02	k: 687	n:10000
KS ci ratio: 2.651309e-02	ci left: 6.769010e-01	ci right 6.951905e-01	k: 6861	n:10000
FILIP1   10000 perm   2 sec   (5468 perm/sec)   p_kst 6.861000e-01   p_cons 6.870000e-02   p_joint 2.869000e-01

Joint ci ratio: 3.066002e-02	ci left: 4.427884e-01	ci right 4.566263e-01	k: 8994	n:20000
Cons ci ratio: 1.030230e-01	ci left: 6.401222e-02	ci right 7.101415e-02	k: 1349	n:20000
KS ci ratio: 1.876124e-02	ci left: 6.793150e-01	ci right 6.922309e-01	k: 13716	n:20000
FILIP1   20000 perm   4 sec   (4887 perm/sec)   p_kst 6.858000e-01   p_cons 6.745000e-02   p_joint 4.497000e-01

Joint ci ratio: 2.899906e-02	ci left: 3.730070e-01	ci right 3.840166e-01	k: 11355	n:30000
Cons ci ratio: 7.715077e-02	ci left: 7.616833e-02	ci right 8.231345e-02	k: 2376	n:30000
KS ci ratio: 1.533169e-02	ci left: 6.801445e-01	ci right 6.906863e-01	k: 20563	n:30000
FILIP1   30000 perm   6 sec   (4668 perm/sec)   p_kst 6.854333e-01   p_cons 7.920000e-02   p_joint 3.785000e-01

Outputting figure to mutsig2_images.part000000000065/FILIP1.2_3662_30000_0.68543_0.0792_0.3785.png
                gene_name: FILIP1
               theta_stop: 0.077 
                    nperm: 30000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.076 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 57 percent done.
FKBP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.406444e-02	ci left: 8.796083e-01	ci right 8.921659e-01	k: 8860	n:10000
KS ci ratio: 8.555495e-02	ci left: 1.660256e-01	ci right 1.809651e-01	k: 1734	n:10000
FKBP4   10000 perm   1 sec   (6689 perm/sec)   p_kst 1.734000e-01   p_cons 8.860000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000065/FKBP4.2_1420_10000_0.1734_0.886_1.png
                gene_name: FKBP4
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
FLG
Processing conservation and coverage...
81% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.315671e-02	ci left: 7.325974e-01	ci right 7.498618e-01	k: 7413	n:10000
KS ci ratio: 1.739549e-02	ci left: 8.280864e-01	ci right 8.427177e-01	k: 8355	n:10000
FLG   10000 perm   3 sec   (3557 perm/sec)   p_kst 8.355000e-01   p_cons 7.413000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000065/FLG.2_12194_10000_0.8355_0.7413_1.png
                gene_name: FLG
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
FLG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.502147e-02	ci left: 8.652935e-01	ci right 8.784890e-01	k: 8720	n:10000
Cons ci ratio: 3.215005e-02	ci left: 5.881121e-01	ci right 6.074309e-01	k: 5978	n:10000
KS ci ratio: 3.402930e-02	ci left: 5.604280e-01	ci right 5.799311e-01	k: 5702	n:10000
FLG2   10000 perm   2 sec   (4455 perm/sec)   p_kst 5.702000e-01   p_cons 5.978000e-01   p_joint 8.720000e-01

Outputting figure to mutsig2_images.part000000000065/FLG2.2_7184_10000_0.5702_0.5978_0.872.png
                gene_name: FLG2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000065
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 65 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1724>
Subject: Job 9877169: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1724>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000066> was used as the working directory.
Started at Fri Oct  5 22:40:13 2012
Results reported at Sat Oct  6 01:05:47 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000066.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000066.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 66  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000066.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   8702.82 sec.
    Max Memory :      2142 MB
    Max Swap   :      4828 MB

    Max Processes  :         7
    Max Threads    :        71

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
66
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 66
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 66: processing genes 5895 - 5984
Calculating significance of each gene.
Using projection method.
5895	FMN1	1
In gene FMN2 the following bins exceed PROBCAP:
    PRAD-EJ-5502	categ 6	N = 3890    n = 1	mu =   6.71e-08
5896	FMN2	1.015553e-01
5897	FMNL1	1
5898	FMNL2	2.069937e-01
In gene FMNL3 the following bins exceed PROBCAP:
    PRAD-CH-5794	categ 6	N = 3058    n = 1	mu =   2.02e-07
5899	FMNL3	9.474071e-02
5900	FMO1	1.263845e-01
5901	FMO2	1
5902	FMO3	1
5903	FMO4	1
5904	FMO5	1
5905	FMOD	1
5906	FMR1	1
5907	FMR1NB	1
5908	FN1	5.089204e-01
5909	FN3K	1
5910	FN3KRP	1
5911	FNBP1	1
5912	FNBP1L	1
In gene FNBP4 the following bins exceed PROBCAP:
    PRAD-EJ-5508	categ 6	N = 2854    n = 1	mu =   2.32e-07
5913	FNBP4	1.316205e-02
5914	FNDC1	1
5915	FNDC3A	2.843433e-01
5916	FNDC3B	1
5917	FNDC4	1
5918	FNDC5	1
5919	FNDC7	1
5920	FNDC8	1
5921	FNIP1	1.523250e-01
5922	FNIP2	2.351526e-02
5923	FNTA	1
5924	FNTB	1.313104e-01
5925	FOLH1	1
5926	FOLH1B	1
5927	FOLR1	1
5928	FOLR2	1
5929	FOLR3	1
5930	FOLR4	1
5931	FOS	1
5932	FOSB	1
5933	FOSL1	1
5934	FOSL2	1
5935	FOXA1	1.125059e-03
5936	FOXA2	9.575497e-03
5937	FOXA3	1.071589e-01
5938	FOXB1	1
5939	FOXB2	1
5940	FOXC1	1
5941	FOXC2	1
5942	FOXD2	1
5943	FOXD3	1
5944	FOXD4	1
5945	FOXD4L1	1
5946	FOXD4L3	1
5947	FOXD4L5	1
5948	FOXE1	1
5949	FOXE3	1
5950	FOXF1	4.355461e-02
5951	FOXF2	1
5952	FOXG1	1
5953	FOXH1	1
5954	FOXI1	1
5955	FOXI2	1
5956	FOXJ1	1
5957	FOXJ2	1
5958	FOXJ3	1
5959	FOXK1	1
5960	FOXK2	1
5961	FOXL1	7.797507e-02
5962	FOXL2	1
5963	FOXM1	1
5964	FOXN1	1.257023e-01
5965	FOXN2	1
5966	FOXN3	1
5967	FOXN4	1
5968	FOXO1	1
5969	FOXO3	1
5970	FOXO4	1
5971	FOXP1	4.036408e-02
5972	FOXP2	1
5973	FOXP3	1
5974	FOXP4	1
5975	FOXQ1	1
5976	FOXR1	1
5977	FOXR2	1
5978	FOXRED1	1
5979	FOXRED2	1
5980	FOXS1	1
5981	FPGS	1
5982	FPGT	1
5983	FPR1	1.077266e-01
5984	FPR2	1
Done

Running MutSig 2:
Scatter job 66: processing genes 5895 - 5984
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
FMN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.780502e-02	ci left: 8.214750e-01	ci right 8.363328e-01	k: 8290	n:10000
Cons ci ratio: 4.482202e-02	ci left: 4.235584e-01	ci right 4.430805e-01	k: 4333	n:10000
KS ci ratio: 1.523591e-02	ci left: 8.620253e-01	ci right 8.753591e-01	k: 8688	n:10000
FMN2   10000 perm   2 sec   (5468 perm/sec)   p_kst 8.688000e-01   p_cons 4.333000e-01   p_joint 8.290000e-01

Outputting figure to mutsig2_images.part000000000066/FMN2.2_5241_10000_0.8688_0.4333_0.829.png
                gene_name: FMN2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 20 percent done.
FNBP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.262761e+00	ci left: 2.422185e-05	ci right 7.222801e-04	k: 2	n:10000
Cons ci ratio: 9.187825e-03	ci left: 9.434661e-01	ci right 9.522706e-01	k: 9480	n:10000
KS ci ratio: 2.262761e+00	ci left: 2.422185e-05	ci right 7.222801e-04	k: 2	n:10000
FNBP4   10000 perm   1 sec   (6733 perm/sec)   p_kst 2.000000e-04   p_cons 9.480000e-01   p_joint 2.000000e-04

Joint ci ratio: 1.306340e+00	ci left: 1.727069e-04	ci right 7.880065e-04	k: 8	n:20000
Cons ci ratio: 6.576169e-03	ci left: 9.435477e-01	ci right 9.498217e-01	k: 18935	n:20000
KS ci ratio: 1.306340e+00	ci left: 1.727069e-04	ci right 7.880065e-04	k: 8	n:20000
FNBP4   20000 perm   3 sec   (5971 perm/sec)   p_kst 4.000000e-04   p_cons 9.467500e-01   p_joint 4.000000e-04

Joint ci ratio: 1.239386e+00	ci left: 1.371880e-04	ci right 5.694167e-04	k: 9	n:30000
Cons ci ratio: 5.730923e-03	ci left: 9.370149e-01	ci right 9.424329e-01	k: 28193	n:30000
KS ci ratio: 1.239386e+00	ci left: 1.371880e-04	ci right 5.694167e-04	k: 9	n:30000
FNBP4   30000 perm   5 sec   (5713 perm/sec)   p_kst 3.000000e-04   p_cons 9.397667e-01   p_joint 3.000000e-04

Joint ci ratio: 1.087022e+00	ci left: 1.550237e-04	ci right 5.239809e-04	k: 12	n:40000
Cons ci ratio: 4.972354e-03	ci left: 9.371699e-01	ci right 9.418660e-01	k: 37582	n:40000
KS ci ratio: 1.087022e+00	ci left: 1.550237e-04	ci right 5.239809e-04	k: 12	n:40000
FNBP4   40000 perm   7 sec   (5354 perm/sec)   p_kst 3.000000e-04   p_cons 9.395500e-01   p_joint 3.000000e-04

Joint ci ratio: 7.999666e-01	ci left: 2.916222e-04	ci right 6.901464e-04	k: 23	n:50000
Cons ci ratio: 4.133009e-03	ci left: 9.453665e-01	ci right 9.493014e-01	k: 47368	n:50000
KS ci ratio: 1.011978e+00	ci left: 1.530868e-04	ci right 4.697478e-04	k: 14	n:50000
FNBP4   50000 perm   10 sec   (5247 perm/sec)   p_kst 2.800000e-04   p_cons 9.473600e-01   p_joint 4.600000e-04

Joint ci ratio: 7.686023e-01	ci left: 2.696623e-04	ci right 6.150212e-04	k: 25	n:60000
Cons ci ratio: 4.079314e-03	ci left: 9.370553e-01	ci right 9.409021e-01	k: 56340	n:60000
KS ci ratio: 9.505970e-01	ci left: 1.524305e-04	ci right 4.330139e-04	k: 16	n:60000
FNBP4   60000 perm   12 sec   (5168 perm/sec)   p_kst 2.666667e-04   p_cons 9.390000e-01   p_joint 4.166667e-04

Joint ci ratio: 7.542535e-01	ci left: 2.426434e-04	ci right 5.441819e-04	k: 26	n:70000
Cons ci ratio: 3.798269e-03	ci left: 9.365356e-01	ci right 9.401137e-01	k: 65684	n:70000
KS ci ratio: 9.238275e-01	ci left: 1.414794e-04	ci right 3.888094e-04	k: 17	n:70000
FNBP4   70000 perm   14 sec   (5063 perm/sec)   p_kst 2.428571e-04   p_cons 9.383429e-01   p_joint 3.714286e-04

Joint ci ratio: 6.928217e-01	ci left: 2.633022e-04	ci right 5.499806e-04	k: 31	n:80000
Cons ci ratio: 3.296132e-03	ci left: 9.448928e-01	ci right 9.480247e-01	k: 75718	n:80000
KS ci ratio: 8.172539e-01	ci left: 1.723488e-04	ci right 4.163239e-04	k: 22	n:80000
FNBP4   80000 perm   16 sec   (4975 perm/sec)   p_kst 2.750000e-04   p_cons 9.464750e-01   p_joint 3.875000e-04

Joint ci ratio: 6.531990e-01	ci left: 2.708898e-04	ci right 5.408092e-04	k: 35	n:90000
Cons ci ratio: 3.095562e-03	ci left: 9.453813e-01	ci right 9.483232e-01	k: 85218	n:90000
KS ci ratio: 7.406910e-01	ci left: 1.977109e-04	ci right 4.364545e-04	k: 27	n:90000
FNBP4   90000 perm   18 sec   (4894 perm/sec)   p_kst 3.000000e-04   p_cons 9.468667e-01   p_joint 3.888889e-04

Joint ci ratio: 7.039401e-01	ci left: 2.024176e-04	ci right 4.282412e-04	k: 30	n:100000
Cons ci ratio: 2.933376e-03	ci left: 9.455732e-01	ci right 9.483608e-01	k: 94698	n:100000
KS ci ratio: 7.039401e-01	ci left: 2.024176e-04	ci right 4.282412e-04	k: 30	n:100000
FNBP4   100000 perm   21 sec   (4812 perm/sec)   p_kst 3.000000e-04   p_cons 9.469800e-01   p_joint 3.000000e-04

Joint ci ratio: 6.822789e-01	ci left: 1.989898e-04	ci right 4.106522e-04	k: 32	n:110000
Cons ci ratio: 2.802612e-03	ci left: 9.454298e-01	ci right 9.480921e-01	k: 104145	n:110000
KS ci ratio: 6.822789e-01	ci left: 1.989898e-04	ci right 4.106522e-04	k: 32	n:110000
FNBP4   110000 perm   23 sec   (4703 perm/sec)   p_kst 2.909091e-04   p_cons 9.467727e-01   p_joint 2.909091e-04

Joint ci ratio: 6.532326e-01	ci left: 2.031647e-04	ci right 4.056146e-04	k: 35	n:120000
Cons ci ratio: 2.678782e-03	ci left: 9.456584e-01	ci right 9.482032e-01	k: 113633	n:120000
KS ci ratio: 6.532326e-01	ci left: 2.031647e-04	ci right 4.056146e-04	k: 35	n:120000
FNBP4   120000 perm   26 sec   (4628 perm/sec)   p_kst 2.916667e-04   p_cons 9.469417e-01   p_joint 2.916667e-04

Joint ci ratio: 6.047691e-01	ci left: 2.263347e-04	ci right 4.278308e-04	k: 41	n:130000
Cons ci ratio: 2.572184e-03	ci left: 9.457683e-01	ci right 9.482117e-01	k: 123110	n:130000
KS ci ratio: 6.047691e-01	ci left: 2.263347e-04	ci right 4.278308e-04	k: 41	n:130000
FNBP4   130000 perm   29 sec   (4559 perm/sec)   p_kst 3.153846e-04   p_cons 9.470000e-01   p_joint 3.153846e-04

Joint ci ratio: 5.778754e-01	ci left: 2.344616e-04	ci right 4.300733e-04	k: 45	n:140000
Cons ci ratio: 2.476845e-03	ci left: 9.458858e-01	ci right 9.482385e-01	k: 132590	n:140000
KS ci ratio: 5.778754e-01	ci left: 2.344616e-04	ci right 4.300733e-04	k: 45	n:140000
FNBP4   140000 perm   31 sec   (4483 perm/sec)   p_kst 3.214286e-04   p_cons 9.470714e-01   p_joint 3.214286e-04

Joint ci ratio: 5.542775e-01	ci left: 2.416793e-04	ci right 4.318479e-04	k: 49	n:150000
Cons ci ratio: 2.390418e-03	ci left: 9.460293e-01	ci right 9.483000e-01	k: 142076	n:150000
KS ci ratio: 5.542775e-01	ci left: 2.416793e-04	ci right 4.318479e-04	k: 49	n:150000
FNBP4   150000 perm   34 sec   (4410 perm/sec)   p_kst 3.266667e-04   p_cons 9.471733e-01   p_joint 3.266667e-04

Joint ci ratio: 5.435162e-01	ci left: 2.373392e-04	ci right 4.190764e-04	k: 51	n:160000
Cons ci ratio: 2.308969e-03	ci left: 9.463075e-01	ci right 9.485012e-01	k: 151586	n:160000
KS ci ratio: 5.435162e-01	ci left: 2.373392e-04	ci right 4.190764e-04	k: 51	n:160000
FNBP4   160000 perm   37 sec   (4344 perm/sec)   p_kst 3.187500e-04   p_cons 9.474125e-01   p_joint 3.187500e-04

Joint ci ratio: 5.383679e-01	ci left: 2.284557e-04	ci right 4.011049e-04	k: 52	n:170000
Cons ci ratio: 2.241229e-03	ci left: 9.462867e-01	ci right 9.484157e-01	k: 161051	n:170000
KS ci ratio: 5.383679e-01	ci left: 2.284557e-04	ci right 4.011049e-04	k: 52	n:170000
FNBP4   170000 perm   40 sec   (4280 perm/sec)   p_kst 3.058824e-04   p_cons 9.473588e-01   p_joint 3.058824e-04

Joint ci ratio: 5.146369e-01	ci left: 2.398488e-04	ci right 4.102592e-04	k: 57	n:180000
Cons ci ratio: 2.181665e-03	ci left: 9.461513e-01	ci right 9.482232e-01	k: 170495	n:180000
KS ci ratio: 5.146369e-01	ci left: 2.398488e-04	ci right 4.102592e-04	k: 57	n:180000
FNBP4   180000 perm   43 sec   (4218 perm/sec)   p_kst 3.166667e-04   p_cons 9.471944e-01   p_joint 3.166667e-04

Joint ci ratio: 4.684421e-01	ci left: 2.825692e-04	ci right 4.595774e-04	k: 69	n:190000
Cons ci ratio: 2.122125e-03	ci left: 9.462434e-01	ci right 9.482587e-01	k: 179979	n:190000
KS ci ratio: 5.102599e-01	ci left: 2.318070e-04	ci right 3.946058e-04	k: 58	n:190000
FNBP4   190000 perm   46 sec   (4156 perm/sec)   p_kst 3.052632e-04   p_cons 9.472579e-01   p_joint 3.631579e-04

Joint ci ratio: 4.587164e-01	ci left: 2.816882e-04	ci right 4.533393e-04	k: 72	n:200000
Cons ci ratio: 2.066066e-03	ci left: 9.463824e-01	ci right 9.483446e-01	k: 189474	n:200000
KS ci ratio: 5.018268e-01	ci left: 2.289392e-04	ci right 3.861428e-04	k: 60	n:200000
FNBP4   200000 perm   49 sec   (4090 perm/sec)   p_kst 3.000000e-04   p_cons 9.473700e-01   p_joint 3.600000e-04

Joint ci ratio: 4.381848e-01	ci left: 2.978445e-04	ci right 4.688239e-04	k: 79	n:210000
Cons ci ratio: 2.013448e-03	ci left: 9.465471e-01	ci right 9.484596e-01	k: 198977	n:210000
KS ci ratio: 4.752917e-01	ci left: 2.472658e-04	ci right 4.051617e-04	k: 67	n:210000
FNBP4   210000 perm   52 sec   (4033 perm/sec)   p_kst 3.190476e-04   p_cons 9.475095e-01   p_joint 3.761905e-04

Joint ci ratio: 4.226209e-01	ci left: 3.086248e-04	ci right 4.777228e-04	k: 85	n:220000
Cons ci ratio: 1.968958e-03	ci left: 9.464773e-01	ci right 9.483472e-01	k: 208432	n:220000
KS ci ratio: 4.618998e-01	ci left: 2.520610e-04	ci right 4.070594e-04	k: 71	n:220000
FNBP4   220000 perm   55 sec   (3978 perm/sec)   p_kst 3.227273e-04   p_cons 9.474182e-01   p_joint 3.863636e-04

Joint ci ratio: 4.108455e-01	ci left: 3.146663e-04	ci right 4.809579e-04	k: 90	n:230000
Cons ci ratio: 1.926447e-03	ci left: 9.464579e-01	ci right 9.482873e-01	k: 217897	n:230000
KS ci ratio: 4.495796e-01	ci left: 2.564964e-04	ci right 4.087359e-04	k: 75	n:230000
FNBP4   230000 perm   59 sec   (3924 perm/sec)   p_kst 3.260870e-04   p_cons 9.473783e-01   p_joint 3.913043e-04

Joint ci ratio: 3.938927e-01	ci left: 3.315168e-04	ci right 4.976053e-04	k: 98	n:240000
Cons ci ratio: 1.888466e-03	ci left: 9.463398e-01	ci right 9.481327e-01	k: 227338	n:240000
KS ci ratio: 4.302006e-01	ci left: 2.717466e-04	ci right 4.240809e-04	k: 82	n:240000
FNBP4   240000 perm   62 sec   (3870 perm/sec)   p_kst 3.416667e-04   p_cons 9.472417e-01   p_joint 4.083333e-04

Joint ci ratio: 3.861687e-01	ci left: 3.326871e-04	ci right 4.952625e-04	k: 102	n:250000
Cons ci ratio: 1.848339e-03	ci left: 9.464653e-01	ci right 9.482203e-01	k: 236837	n:250000
KS ci ratio: 4.201941e-01	ci left: 2.751645e-04	ci right 4.248200e-04	k: 86	n:250000
FNBP4   250000 perm   65 sec   (3820 perm/sec)   p_kst 3.440000e-04   p_cons 9.473480e-01   p_joint 4.080000e-04

Joint ci ratio: 3.788820e-01	ci left: 3.337968e-04	ci right 4.930710e-04	k: 106	n:260000
Cons ci ratio: 1.812896e-03	ci left: 9.464575e-01	ci right 9.481787e-01	k: 246304	n:260000
KS ci ratio: 4.108549e-01	ci left: 2.783575e-04	ci right 4.254650e-04	k: 90	n:260000
FNBP4   260000 perm   69 sec   (3767 perm/sec)   p_kst 3.461538e-04   p_cons 9.473231e-01   p_joint 4.076923e-04

Joint ci ratio: 3.686847e-01	ci left: 3.415691e-04	ci right 4.991090e-04	k: 112	n:270000
Cons ci ratio: 1.779021e-03	ci left: 9.464729e-01	ci right 9.481619e-01	k: 255777	n:270000
KS ci ratio: 4.000115e-01	ci left: 2.846782e-04	ci right 4.301038e-04	k: 95	n:270000
FNBP4   270000 perm   73 sec   (3720 perm/sec)   p_kst 3.518519e-04   p_cons 9.473222e-01   p_joint 4.148148e-04

Joint ci ratio: 3.939045e-01	ci left: 2.841558e-04	ci right 4.265216e-04	k: 98	n:280000
Cons ci ratio: 1.747414e-03	ci left: 9.464624e-01	ci right 9.481212e-01	k: 265243	n:280000
KS ci ratio: 3.939045e-01	ci left: 2.841558e-04	ci right 4.265216e-04	k: 98	n:280000
FNBP4   280000 perm   76 sec   (3673 perm/sec)   p_kst 3.500000e-04   p_cons 9.472964e-01   p_joint 3.500000e-04

Joint ci ratio: 3.880689e-01	ci left: 2.836851e-04	ci right 4.231709e-04	k: 101	n:290000
Cons ci ratio: 1.718025e-03	ci left: 9.464181e-01	ci right 9.480488e-01	k: 274699	n:290000
KS ci ratio: 3.880689e-01	ci left: 2.836851e-04	ci right 4.231709e-04	k: 101	n:290000
FNBP4   290000 perm   80 sec   (3627 perm/sec)   p_kst 3.482759e-04   p_cons 9.472379e-01   p_joint 3.482759e-04

Joint ci ratio: 3.824852e-01	ci left: 2.832603e-04	ci right 4.200293e-04	k: 104	n:300000
Cons ci ratio: 1.691477e-03	ci left: 9.462930e-01	ci right 9.478983e-01	k: 284130	n:300000
KS ci ratio: 3.824852e-01	ci left: 2.832603e-04	ci right 4.200293e-04	k: 104	n:300000
FNBP4   300000 perm   84 sec   (3577 perm/sec)   p_kst 3.466667e-04   p_cons 9.471000e-01   p_joint 3.466667e-04

Joint ci ratio: 3.754013e-01	ci left: 2.857972e-04	ci right 4.206065e-04	k: 108	n:310000
Cons ci ratio: 1.663863e-03	ci left: 9.463128e-01	ci right 9.478918e-01	k: 293603	n:310000
KS ci ratio: 3.754013e-01	ci left: 2.857972e-04	ci right 4.206065e-04	k: 108	n:310000
FNBP4   310000 perm   88 sec   (3524 perm/sec)   p_kst 3.483871e-04   p_cons 9.471065e-01   p_joint 3.483871e-04

Joint ci ratio: 3.720048e-01	ci left: 2.825289e-04	ci right 4.142971e-04	k: 110	n:320000
Cons ci ratio: 1.638172e-03	ci left: 9.462937e-01	ci right 9.478482e-01	k: 303064	n:320000
KS ci ratio: 3.720048e-01	ci left: 2.825289e-04	ci right 4.142971e-04	k: 110	n:320000
FNBP4   320000 perm   92 sec   (3483 perm/sec)   p_kst 3.437500e-04   p_cons 9.470750e-01   p_joint 3.437500e-04

Joint ci ratio: 3.654776e-01	ci left: 2.849656e-04	ci right 4.149820e-04	k: 114	n:330000
Cons ci ratio: 1.611878e-03	ci left: 9.463858e-01	ci right 9.479154e-01	k: 312561	n:330000
KS ci ratio: 3.654776e-01	ci left: 2.849656e-04	ci right 4.149820e-04	k: 114	n:330000
FNBP4   330000 perm   96 sec   (3443 perm/sec)   p_kst 3.454545e-04   p_cons 9.471545e-01   p_joint 3.454545e-04

Joint ci ratio: 3.562997e-01	ci left: 2.926317e-04	ci right 4.220166e-04	k: 120	n:340000
Cons ci ratio: 1.587042e-03	ci left: 9.464578e-01	ci right 9.479640e-01	k: 322053	n:340000
KS ci ratio: 3.562997e-01	ci left: 2.926317e-04	ci right 4.220166e-04	k: 120	n:340000
FNBP4   340000 perm   100 sec   (3404 perm/sec)   p_kst 3.529412e-04   p_cons 9.472147e-01   p_joint 3.529412e-04

Joint ci ratio: 3.563015e-01	ci left: 2.842706e-04	ci right 4.099593e-04	k: 120	n:350000
Cons ci ratio: 1.564300e-03	ci left: 9.464626e-01	ci right 9.479471e-01	k: 331523	n:350000
KS ci ratio: 3.563015e-01	ci left: 2.842706e-04	ci right 4.099593e-04	k: 120	n:350000
FNBP4   350000 perm   104 sec   (3365 perm/sec)   p_kst 3.428571e-04   p_cons 9.472086e-01   p_joint 3.428571e-04

Joint ci ratio: 3.519653e-01	ci left: 2.839662e-04	ci right 4.076433e-04	k: 123	n:360000
Cons ci ratio: 1.544565e-03	ci left: 9.463331e-01	ci right 9.477986e-01	k: 340945	n:360000
KS ci ratio: 3.519653e-01	ci left: 2.839662e-04	ci right 4.076433e-04	k: 123	n:360000
FNBP4   360000 perm   108 sec   (3326 perm/sec)   p_kst 3.416667e-04   p_cons 9.470694e-01   p_joint 3.416667e-04

Joint ci ratio: 3.450761e-01	ci left: 2.886223e-04	ci right 4.113174e-04	k: 128	n:370000
Cons ci ratio: 1.524070e-03	ci left: 9.463086e-01	ci right 9.477546e-01	k: 350403	n:370000
KS ci ratio: 3.450761e-01	ci left: 2.886223e-04	ci right 4.113174e-04	k: 128	n:370000
FNBP4   370000 perm   112 sec   (3290 perm/sec)   p_kst 3.459459e-04   p_cons 9.470351e-01   p_joint 3.459459e-04

Joint ci ratio: 3.424325e-01	ci left: 2.858357e-04	ci right 4.062092e-04	k: 130	n:380000
Cons ci ratio: 1.502948e-03	ci left: 9.463809e-01	ci right 9.478070e-01	k: 359897	n:380000
KS ci ratio: 3.424325e-01	ci left: 2.858357e-04	ci right 4.062092e-04	k: 130	n:380000
FNBP4   380000 perm   117 sec   (3249 perm/sec)   p_kst 3.421053e-04   p_cons 9.470974e-01   p_joint 3.421053e-04

Joint ci ratio: 3.373211e-01	ci left: 2.878878e-04	ci right 4.069220e-04	k: 134	n:390000
Cons ci ratio: 1.483477e-03	ci left: 9.463955e-01	ci right 9.478030e-01	k: 369370	n:390000
KS ci ratio: 3.373211e-01	ci left: 2.878878e-04	ci right 4.069220e-04	k: 134	n:390000
FNBP4   390000 perm   121 sec   (3214 perm/sec)   p_kst 3.435897e-04   p_cons 9.471026e-01   p_joint 3.435897e-04

Joint ci ratio: 3.324319e-01	ci left: 2.898499e-04	ci right 4.075866e-04	k: 138	n:400000
Cons ci ratio: 1.464926e-03	ci left: 9.463968e-01	ci right 9.477867e-01	k: 378838	n:400000
KS ci ratio: 3.324319e-01	ci left: 2.898499e-04	ci right 4.075866e-04	k: 138	n:400000
FNBP4   400000 perm   126 sec   (3180 perm/sec)   p_kst 3.450000e-04   p_cons 9.470950e-01   p_joint 3.450000e-04

Joint ci ratio: 3.289017e-01	ci left: 2.894901e-04	ci right 4.055678e-04	k: 141	n:410000
Cons ci ratio: 1.447934e-03	ci left: 9.463369e-01	ci right 9.477105e-01	k: 388281	n:410000
KS ci ratio: 3.289017e-01	ci left: 2.894901e-04	ci right 4.055678e-04	k: 141	n:410000
FNBP4   410000 perm   130 sec   (3144 perm/sec)   p_kst 3.439024e-04   p_cons 9.470268e-01   p_joint 3.439024e-04

Joint ci ratio: 3.277507e-01	ci left: 2.847821e-04	ci right 3.984881e-04	k: 142	n:420000
Cons ci ratio: 1.429073e-03	ci left: 9.464523e-01	ci right 9.478082e-01	k: 397796	n:420000
KS ci ratio: 3.277507e-01	ci left: 2.847821e-04	ci right 3.984881e-04	k: 142	n:420000
FNBP4   420000 perm   135 sec   (3110 perm/sec)   p_kst 3.380952e-04   p_cons 9.471333e-01   p_joint 3.380952e-04

Joint ci ratio: 3.243661e-01	ci left: 2.845650e-04	ci right 3.967668e-04	k: 145	n:430000
Cons ci ratio: 1.412893e-03	ci left: 9.464221e-01	ci right 9.477625e-01	k: 407251	n:430000
KS ci ratio: 3.243661e-01	ci left: 2.845650e-04	ci right 3.967668e-04	k: 145	n:430000
FNBP4   430000 perm   140 sec   (3077 perm/sec)   p_kst 3.372093e-04   p_cons 9.470953e-01   p_joint 3.372093e-04

Joint ci ratio: 3.200117e-01	ci left: 2.864534e-04	ci right 3.975729e-04	k: 149	n:440000
Cons ci ratio: 1.398137e-03	ci left: 9.463294e-01	ci right 9.476556e-01	k: 416678	n:440000
KS ci ratio: 3.200117e-01	ci left: 2.864534e-04	ci right 3.975729e-04	k: 149	n:440000
FNBP4   440000 perm   145 sec   (3044 perm/sec)   p_kst 3.386364e-04   p_cons 9.469955e-01   p_joint 3.386364e-04

Joint ci ratio: 3.189512e-01	ci left: 2.821317e-04	ci right 3.911379e-04	k: 150	n:450000
Cons ci ratio: 1.382941e-03	ci left: 9.463057e-01	ci right 9.476175e-01	k: 426134	n:450000
KS ci ratio: 3.189512e-01	ci left: 2.821317e-04	ci right 3.911379e-04	k: 150	n:450000
FNBP4   450000 perm   149 sec   (3015 perm/sec)   p_kst 3.333333e-04   p_cons 9.469644e-01   p_joint 3.333333e-04

Joint ci ratio: 3.168602e-01	ci left: 2.799993e-04	ci right 3.873286e-04	k: 152	n:460000
Cons ci ratio: 1.367667e-03	ci left: 9.463246e-01	ci right 9.476219e-01	k: 435609	n:460000
KS ci ratio: 3.168602e-01	ci left: 2.799993e-04	ci right 3.873286e-04	k: 152	n:460000
FNBP4   460000 perm   154 sec   (2984 perm/sec)   p_kst 3.304348e-04   p_cons 9.469761e-01   p_joint 3.304348e-04

Joint ci ratio: 3.127975e-01	ci left: 2.818802e-04	ci right 3.882684e-04	k: 156	n:470000
Cons ci ratio: 1.354007e-03	ci left: 9.462594e-01	ci right 9.475436e-01	k: 445045	n:470000
KS ci ratio: 3.127975e-01	ci left: 2.818802e-04	ci right 3.882684e-04	k: 156	n:470000
FNBP4   470000 perm   159 sec   (2954 perm/sec)   p_kst 3.319149e-04   p_cons 9.469043e-01   p_joint 3.319149e-04

Joint ci ratio: 3.108244e-01	ci left: 2.798483e-04	ci right 3.846712e-04	k: 158	n:480000
Cons ci ratio: 1.339773e-03	ci left: 9.462703e-01	ci right 9.475410e-01	k: 454516	n:480000
KS ci ratio: 3.108244e-01	ci left: 2.798483e-04	ci right 3.846712e-04	k: 158	n:480000
FNBP4   480000 perm   164 sec   (2925 perm/sec)   p_kst 3.291667e-04   p_cons 9.469083e-01   p_joint 3.291667e-04

Joint ci ratio: 3.079331e-01	ci left: 2.797843e-04	ci right 3.834170e-04	k: 161	n:490000
Cons ci ratio: 1.326060e-03	ci left: 9.462746e-01	ci right 9.475323e-01	k: 463984	n:490000
KS ci ratio: 3.079331e-01	ci left: 2.797843e-04	ci right 3.834170e-04	k: 161	n:490000
FNBP4   490000 perm   169 sec   (2895 perm/sec)   p_kst 3.285714e-04   p_cons 9.469061e-01   p_joint 3.285714e-04

Joint ci ratio: 3.051209e-01	ci left: 2.797272e-04	ci right 3.822088e-04	k: 164	n:500000
Cons ci ratio: 1.313726e-03	ci left: 9.462045e-01	ci right 9.474503e-01	k: 473415	n:500000
KS ci ratio: 3.051209e-01	ci left: 2.797272e-04	ci right 3.822088e-04	k: 164	n:500000
FNBP4   500000 perm   174 sec   (2868 perm/sec)   p_kst 3.280000e-04   p_cons 9.468300e-01   p_joint 3.280000e-04

Joint ci ratio: 3.023845e-01	ci left: 2.796764e-04	ci right 3.810438e-04	k: 167	n:510000
Cons ci ratio: 1.301550e-03	ci left: 9.461510e-01	ci right 9.473851e-01	k: 482853	n:510000
KS ci ratio: 3.023845e-01	ci left: 2.796764e-04	ci right 3.810438e-04	k: 167	n:510000
FNBP4   510000 perm   180 sec   (2838 perm/sec)   p_kst 3.274510e-04   p_cons 9.467706e-01   p_joint 3.274510e-04

Joint ci ratio: 3.023854e-01	ci left: 2.742979e-04	ci right 3.737162e-04	k: 167	n:520000
Cons ci ratio: 1.288647e-03	ci left: 9.461827e-01	ci right 9.474046e-01	k: 492334	n:520000
KS ci ratio: 3.023854e-01	ci left: 2.742979e-04	ci right 3.737162e-04	k: 167	n:520000
FNBP4   520000 perm   185 sec   (2810 perm/sec)   p_kst 3.211538e-04   p_cons 9.467962e-01   p_joint 3.211538e-04

Joint ci ratio: 2.962749e-01	ci left: 2.813386e-04	ci right 3.808611e-04	k: 174	n:530000
Cons ci ratio: 1.276335e-03	ci left: 9.461962e-01	ci right 9.474065e-01	k: 501806	n:530000
KS ci ratio: 2.962749e-01	ci left: 2.813386e-04	ci right 3.808611e-04	k: 174	n:530000
FNBP4   530000 perm   190 sec   (2784 perm/sec)   p_kst 3.283019e-04   p_cons 9.468038e-01   p_joint 3.283019e-04

Joint ci ratio: 2.929457e-01	ci left: 2.829887e-04	ci right 3.817613e-04	k: 178	n:540000
Cons ci ratio: 1.264904e-03	ci left: 9.461664e-01	ci right 9.473658e-01	k: 511255	n:540000
KS ci ratio: 2.929457e-01	ci left: 2.829887e-04	ci right 3.817613e-04	k: 178	n:540000
FNBP4   540000 perm   196 sec   (2757 perm/sec)   p_kst 3.296296e-04   p_cons 9.467685e-01   p_joint 3.296296e-04

Joint ci ratio: 2.897263e-01	ci left: 2.845848e-04	ci right 3.826228e-04	k: 182	n:550000
Cons ci ratio: 1.254000e-03	ci left: 9.461195e-01	ci right 9.473085e-01	k: 520694	n:550000
KS ci ratio: 2.897263e-01	ci left: 2.845848e-04	ci right 3.826228e-04	k: 182	n:550000
FNBP4   550000 perm   201 sec   (2731 perm/sec)   p_kst 3.309091e-04   p_cons 9.467164e-01   p_joint 3.309091e-04

Joint ci ratio: 2.835926e-01	ci left: 2.927619e-04	ci right 3.910999e-04	k: 190	n:560000
Cons ci ratio: 1.242514e-03	ci left: 9.461444e-01	ci right 9.473224e-01	k: 530172	n:560000
KS ci ratio: 2.835926e-01	ci left: 2.927619e-04	ci right 3.910999e-04	k: 190	n:560000
FNBP4   560000 perm   207 sec   (2705 perm/sec)   p_kst 3.392857e-04   p_cons 9.467357e-01   p_joint 3.392857e-04

Joint ci ratio: 2.828537e-01	ci left: 2.892555e-04	ci right 3.861173e-04	k: 191	n:570000
Cons ci ratio: 1.231553e-03	ci left: 9.461507e-01	ci right 9.473184e-01	k: 539640	n:570000
KS ci ratio: 2.828537e-01	ci left: 2.892555e-04	ci right 3.861173e-04	k: 191	n:570000
FNBP4   570000 perm   213 sec   (2678 perm/sec)   p_kst 3.350877e-04   p_cons 9.467368e-01   p_joint 3.350877e-04

Joint ci ratio: 2.806696e-01	ci left: 2.890753e-04	ci right 3.849970e-04	k: 194	n:580000
Cons ci ratio: 1.220626e-03	ci left: 9.461777e-01	ci right 9.473351e-01	k: 549120	n:580000
KS ci ratio: 2.806696e-01	ci left: 2.890753e-04	ci right 3.849970e-04	k: 194	n:580000
FNBP4   580000 perm   219 sec   (2654 perm/sec)   p_kst 3.344828e-04   p_cons 9.467586e-01   p_joint 3.344828e-04

Joint ci ratio: 2.778343e-01	ci left: 2.904807e-04	ci right 3.857248e-04	k: 198	n:590000
Cons ci ratio: 1.210493e-03	ci left: 9.461613e-01	ci right 9.473089e-01	k: 558575	n:590000
KS ci ratio: 2.778343e-01	ci left: 2.904807e-04	ci right 3.857248e-04	k: 198	n:590000
FNBP4   590000 perm   224 sec   (2629 perm/sec)   p_kst 3.355932e-04   p_cons 9.467373e-01   p_joint 3.355932e-04

Joint ci ratio: 2.764489e-01	ci left: 2.887410e-04	ci right 3.828605e-04	k: 200	n:600000
Cons ci ratio: 1.200331e-03	ci left: 9.461688e-01	ci right 9.473069e-01	k: 568044	n:600000
KS ci ratio: 2.764489e-01	ci left: 2.887410e-04	ci right 3.828605e-04	k: 200	n:600000
FNBP4   600000 perm   230 sec   (2605 perm/sec)   p_kst 3.333333e-04   p_cons 9.467400e-01   p_joint 3.333333e-04

Joint ci ratio: 2.750841e-01	ci left: 2.870595e-04	ci right 3.800890e-04	k: 202	n:610000
Cons ci ratio: 1.190749e-03	ci left: 9.461482e-01	ci right 9.472771e-01	k: 577496	n:610000
KS ci ratio: 2.750841e-01	ci left: 2.870595e-04	ci right 3.800890e-04	k: 202	n:610000
FNBP4   610000 perm   236 sec   (2581 perm/sec)   p_kst 3.311475e-04   p_cons 9.467148e-01   p_joint 3.311475e-04

Joint ci ratio: 2.744095e-01	ci left: 2.839312e-04	ci right 3.756823e-04	k: 203	n:620000
Cons ci ratio: 1.181412e-03	ci left: 9.461266e-01	ci right 9.472466e-01	k: 586947	n:620000
KS ci ratio: 2.744095e-01	ci left: 2.839312e-04	ci right 3.756823e-04	k: 203	n:620000
FNBP4   620000 perm   242 sec   (2558 perm/sec)   p_kst 3.274194e-04   p_cons 9.466887e-01   p_joint 3.274194e-04

Joint ci ratio: 2.724139e-01	ci left: 2.838599e-04	ci right 3.748067e-04	k: 206	n:630000
Cons ci ratio: 1.172199e-03	ci left: 9.461138e-01	ci right 9.472250e-01	k: 596403	n:630000
KS ci ratio: 2.724139e-01	ci left: 2.838599e-04	ci right 3.748067e-04	k: 206	n:630000
FNBP4   630000 perm   248 sec   (2535 perm/sec)   p_kst 3.269841e-04   p_cons 9.466714e-01   p_joint 3.269841e-04

Joint ci ratio: 2.704611e-01	ci left: 2.837931e-04	ci right 3.739561e-04	k: 209	n:640000
Cons ci ratio: 1.163125e-03	ci left: 9.461076e-01	ci right 9.472102e-01	k: 605863	n:640000
KS ci ratio: 2.704611e-01	ci left: 2.837931e-04	ci right 3.739561e-04	k: 209	n:640000
FNBP4   640000 perm   255 sec   (2513 perm/sec)   p_kst 3.265625e-04   p_cons 9.466609e-01   p_joint 3.265625e-04

Joint ci ratio: 2.691826e-01	ci left: 2.822958e-04	ci right 3.714875e-04	k: 211	n:650000
Cons ci ratio: 1.153750e-03	ci left: 9.461465e-01	ci right 9.472403e-01	k: 615352	n:650000
KS ci ratio: 2.691826e-01	ci left: 2.822958e-04	ci right 3.714875e-04	k: 211	n:650000
FNBP4   650000 perm   261 sec   (2491 perm/sec)   p_kst 3.246154e-04   p_cons 9.466954e-01   p_joint 3.246154e-04

Joint ci ratio: 2.672980e-01	ci left: 2.822584e-04	ci right 3.707093e-04	k: 214	n:660000
Cons ci ratio: 1.144631e-03	ci left: 9.461812e-01	ci right 9.472664e-01	k: 624839	n:660000
KS ci ratio: 2.672980e-01	ci left: 2.822584e-04	ci right 3.707093e-04	k: 214	n:660000
FNBP4   660000 perm   267 sec   (2470 perm/sec)   p_kst 3.242424e-04   p_cons 9.467258e-01   p_joint 3.242424e-04

Joint ci ratio: 2.654525e-01	ci left: 2.822242e-04	ci right 3.699523e-04	k: 217	n:670000
Cons ci ratio: 1.136263e-03	ci left: 9.461669e-01	ci right 9.472441e-01	k: 634294	n:670000
KS ci ratio: 2.654525e-01	ci left: 2.822242e-04	ci right 3.699523e-04	k: 217	n:670000
FNBP4   670000 perm   274 sec   (2448 perm/sec)   p_kst 3.238806e-04   p_cons 9.467075e-01   p_joint 3.238806e-04

Joint ci ratio: 2.648462e-01	ci left: 2.794467e-04	ci right 3.660800e-04	k: 218	n:680000
Cons ci ratio: 1.128239e-03	ci left: 9.461383e-01	ci right 9.472079e-01	k: 643739	n:680000
KS ci ratio: 2.648462e-01	ci left: 2.794467e-04	ci right 3.660800e-04	k: 218	n:680000
FNBP4   680000 perm   280 sec   (2428 perm/sec)   p_kst 3.205882e-04   p_cons 9.466750e-01   p_joint 3.205882e-04

Joint ci ratio: 2.636453e-01	ci left: 2.781032e-04	ci right 3.638646e-04	k: 220	n:690000
Cons ci ratio: 1.119982e-03	ci left: 9.461470e-01	ci right 9.472087e-01	k: 653209	n:690000
KS ci ratio: 2.636453e-01	ci left: 2.781032e-04	ci right 3.638646e-04	k: 220	n:690000
FNBP4   690000 perm   287 sec   (2408 perm/sec)   p_kst 3.188406e-04   p_cons 9.466797e-01   p_joint 3.188406e-04

Joint ci ratio: 2.624606e-01	ci left: 2.767991e-04	ci right 3.617117e-04	k: 222	n:700000
Cons ci ratio: 1.112075e-03	ci left: 9.461396e-01	ci right 9.471938e-01	k: 662668	n:700000
KS ci ratio: 2.624606e-01	ci left: 2.767991e-04	ci right 3.617117e-04	k: 222	n:700000
FNBP4   700000 perm   293 sec   (2388 perm/sec)   p_kst 3.171429e-04   p_cons 9.466686e-01   p_joint 3.171429e-04

Joint ci ratio: 2.589989e-01	ci left: 2.807990e-04	ci right 3.656188e-04	k: 228	n:710000
Cons ci ratio: 1.103995e-03	ci left: 9.461636e-01	ci right 9.472102e-01	k: 672149	n:710000
KS ci ratio: 2.589989e-01	ci left: 2.807990e-04	ci right 3.656188e-04	k: 228	n:710000
FNBP4   710000 perm   300 sec   (2368 perm/sec)   p_kst 3.211268e-04   p_cons 9.466887e-01   p_joint 3.211268e-04

Joint ci ratio: 2.556707e-01	ci left: 2.846950e-04	ci right 3.694103e-04	k: 234	n:720000
Cons ci ratio: 1.096511e-03	ci left: 9.461479e-01	ci right 9.471873e-01	k: 681602	n:720000
KS ci ratio: 2.556707e-01	ci left: 2.846950e-04	ci right 3.694103e-04	k: 234	n:720000
FNBP4   720000 perm   307 sec   (2348 perm/sec)   p_kst 3.250000e-04   p_cons 9.466694e-01   p_joint 3.250000e-04

Joint ci ratio: 2.556713e-01	ci left: 2.807950e-04	ci right 3.643500e-04	k: 234	n:730000
Cons ci ratio: 1.089236e-03	ci left: 9.461272e-01	ci right 9.471597e-01	k: 691051	n:730000
KS ci ratio: 2.556713e-01	ci left: 2.807950e-04	ci right 3.643500e-04	k: 234	n:730000
FNBP4   730000 perm   313 sec   (2329 perm/sec)   p_kst 3.205479e-04   p_cons 9.466452e-01   p_joint 3.205479e-04

Joint ci ratio: 2.551294e-01	ci left: 2.782653e-04	ci right 3.608641e-04	k: 235	n:740000
Cons ci ratio: 1.082928e-03	ci left: 9.460297e-01	ci right 9.470560e-01	k: 700443	n:740000
KS ci ratio: 2.551294e-01	ci left: 2.782653e-04	ci right 3.608641e-04	k: 235	n:740000
FNBP4   740000 perm   321 sec   (2307 perm/sec)   p_kst 3.175676e-04   p_cons 9.465446e-01   p_joint 3.175676e-04

Joint ci ratio: 2.535231e-01	ci left: 2.783001e-04	ci right 3.603070e-04	k: 238	n:750000
Cons ci ratio: 1.075719e-03	ci left: 9.460298e-01	ci right 9.470494e-01	k: 709906	n:750000
KS ci ratio: 2.535231e-01	ci left: 2.783001e-04	ci right 3.603070e-04	k: 238	n:750000
FNBP4   750000 perm   328 sec   (2289 perm/sec)   p_kst 3.173333e-04   p_cons 9.465413e-01   p_joint 3.173333e-04

Joint ci ratio: 2.529948e-01	ci left: 2.758705e-04	ci right 3.569653e-04	k: 239	n:760000
Cons ci ratio: 1.068138e-03	ci left: 9.460790e-01	ci right 9.470913e-01	k: 719406	n:760000
KS ci ratio: 2.529948e-01	ci left: 2.758705e-04	ci right 3.569653e-04	k: 239	n:760000
FNBP4   760000 perm   335 sec   (2270 perm/sec)   p_kst 3.144737e-04   p_cons 9.465868e-01   p_joint 3.144737e-04

Joint ci ratio: 2.529953e-01	ci left: 2.722877e-04	ci right 3.523295e-04	k: 239	n:770000
Cons ci ratio: 1.060864e-03	ci left: 9.461124e-01	ci right 9.471180e-01	k: 728895	n:770000
KS ci ratio: 2.529953e-01	ci left: 2.722877e-04	ci right 3.523295e-04	k: 239	n:770000
FNBP4   770000 perm   342 sec   (2252 perm/sec)   p_kst 3.103896e-04   p_cons 9.466169e-01   p_joint 3.103896e-04

Joint ci ratio: 2.514288e-01	ci left: 2.723999e-04	ci right 3.519012e-04	k: 242	n:780000
Cons ci ratio: 1.054177e-03	ci left: 9.461026e-01	ci right 9.471018e-01	k: 738351	n:780000
KS ci ratio: 2.514288e-01	ci left: 2.723999e-04	ci right 3.519012e-04	k: 242	n:780000
FNBP4   780000 perm   349 sec   (2235 perm/sec)   p_kst 3.102564e-04   p_cons 9.466038e-01   p_joint 3.102564e-04

Joint ci ratio: 2.493845e-01	ci left: 2.736974e-04	ci right 3.528271e-04	k: 246	n:790000
Cons ci ratio: 1.047786e-03	ci left: 9.460765e-01	ci right 9.470696e-01	k: 747794	n:790000
KS ci ratio: 2.493845e-01	ci left: 2.736974e-04	ci right 3.528271e-04	k: 246	n:790000
FNBP4   790000 perm   356 sec   (2218 perm/sec)   p_kst 3.113924e-04   p_cons 9.465747e-01   p_joint 3.113924e-04

Joint ci ratio: 2.478837e-01	ci left: 2.737925e-04	ci right 3.524000e-04	k: 249	n:800000
Cons ci ratio: 1.041638e-03	ci left: 9.460385e-01	ci right 9.470257e-01	k: 757227	n:800000
KS ci ratio: 2.478837e-01	ci left: 2.737925e-04	ci right 3.524000e-04	k: 249	n:800000
FNBP4   800000 perm   363 sec   (2201 perm/sec)   p_kst 3.112500e-04   p_cons 9.465337e-01   p_joint 3.112500e-04

Joint ci ratio: 2.459240e-01	ci left: 2.750451e-04	ci right 3.532925e-04	k: 253	n:810000
Cons ci ratio: 1.035306e-03	ci left: 9.460300e-01	ci right 9.470112e-01	k: 766683	n:810000
KS ci ratio: 2.459240e-01	ci left: 2.750451e-04	ci right 3.532925e-04	k: 253	n:810000
FNBP4   810000 perm   371 sec   (2183 perm/sec)   p_kst 3.123457e-04   p_cons 9.465222e-01   p_joint 3.123457e-04

Joint ci ratio: 2.449616e-01	ci left: 2.739799e-04	ci right 3.515728e-04	k: 255	n:820000
Cons ci ratio: 1.029286e-03	ci left: 9.460022e-01	ci right 9.469776e-01	k: 776123	n:820000
KS ci ratio: 2.449616e-01	ci left: 2.739799e-04	ci right 3.515728e-04	k: 255	n:820000
FNBP4   820000 perm   378 sec   (2167 perm/sec)   p_kst 3.109756e-04   p_cons 9.464915e-01   p_joint 3.109756e-04

Joint ci ratio: 2.430699e-01	ci left: 2.752036e-04	ci right 3.524504e-04	k: 259	n:830000
Cons ci ratio: 1.023029e-03	ci left: 9.460089e-01	ci right 9.469784e-01	k: 785591	n:830000
KS ci ratio: 2.430699e-01	ci left: 2.752036e-04	ci right 3.524504e-04	k: 259	n:830000
FNBP4   830000 perm   386 sec   (2150 perm/sec)   p_kst 3.120482e-04   p_cons 9.464952e-01   p_joint 3.120482e-04

Joint ci ratio: 2.421405e-01	ci left: 2.741636e-04	ci right 3.507800e-04	k: 261	n:840000
Cons ci ratio: 1.016682e-03	ci left: 9.460358e-01	ci right 9.469992e-01	k: 795076	n:840000
KS ci ratio: 2.421405e-01	ci left: 2.741636e-04	ci right 3.507800e-04	k: 261	n:840000
FNBP4   840000 perm   394 sec   (2133 perm/sec)   p_kst 3.107143e-04   p_cons 9.465190e-01   p_joint 3.107143e-04

Joint ci ratio: 2.398623e-01	ci left: 2.764653e-04	ci right 3.528900e-04	k: 266	n:850000
Cons ci ratio: 1.010686e-03	ci left: 9.460384e-01	ci right 9.469962e-01	k: 804541	n:850000
KS ci ratio: 2.398623e-01	ci left: 2.764653e-04	ci right 3.528900e-04	k: 266	n:850000
FNBP4   850000 perm   401 sec   (2118 perm/sec)   p_kst 3.129412e-04   p_cons 9.465188e-01   p_joint 3.129412e-04

Joint ci ratio: 2.385260e-01	ci left: 2.765299e-04	ci right 3.524836e-04	k: 269	n:860000
Cons ci ratio: 1.004633e-03	ci left: 9.460573e-01	ci right 9.470094e-01	k: 814020	n:860000
KS ci ratio: 2.385260e-01	ci left: 2.765299e-04	ci right 3.524836e-04	k: 269	n:860000
FNBP4   860000 perm   409 sec   (2103 perm/sec)   p_kst 3.127907e-04   p_cons 9.465349e-01   p_joint 3.127907e-04

Joint ci ratio: 2.363474e-01	ci left: 2.787567e-04	ci right 3.545204e-04	k: 274	n:870000
Cons ci ratio: 9.987785e-04	ci left: 9.460666e-01	ci right 9.470131e-01	k: 823491	n:870000
KS ci ratio: 2.363474e-01	ci left: 2.787567e-04	ci right 3.545204e-04	k: 274	n:870000
FNBP4   870000 perm   417 sec   (2087 perm/sec)   p_kst 3.149425e-04   p_cons 9.465414e-01   p_joint 3.149425e-04

Joint ci ratio: 2.346469e-01	ci left: 2.798663e-04	ci right 3.553049e-04	k: 278	n:880000
Cons ci ratio: 9.930250e-04	ci left: 9.460757e-01	ci right 9.470168e-01	k: 832962	n:880000
KS ci ratio: 2.346469e-01	ci left: 2.798663e-04	ci right 3.553049e-04	k: 278	n:880000
FNBP4   880000 perm   425 sec   (2071 perm/sec)   p_kst 3.159091e-04   p_cons 9.465477e-01   p_joint 3.159091e-04

Joint ci ratio: 2.342278e-01	ci left: 2.777793e-04	ci right 3.525022e-04	k: 279	n:890000
Cons ci ratio: 9.876548e-04	ci left: 9.460553e-01	ci right 9.469912e-01	k: 842407	n:890000
KS ci ratio: 2.342278e-01	ci left: 2.777793e-04	ci right 3.525022e-04	k: 279	n:890000
FNBP4   890000 perm   433 sec   (2055 perm/sec)   p_kst 3.134831e-04   p_cons 9.465247e-01   p_joint 3.134831e-04

Joint ci ratio: 2.333959e-01	ci left: 2.767849e-04	ci right 3.509377e-04	k: 281	n:900000
Cons ci ratio: 9.828341e-04	ci left: 9.459874e-01	ci right 9.469187e-01	k: 851809	n:900000
KS ci ratio: 2.333959e-01	ci left: 2.767849e-04	ci right 3.509377e-04	k: 281	n:900000
FNBP4   900000 perm   441 sec   (2040 perm/sec)   p_kst 3.122222e-04   p_cons 9.464544e-01   p_joint 3.122222e-04

Joint ci ratio: 2.313537e-01	ci left: 2.789181e-04	ci right 3.528950e-04	k: 286	n:910000
Cons ci ratio: 9.779438e-04	ci left: 9.459353e-01	ci right 9.468619e-01	k: 861224	n:910000
KS ci ratio: 2.313537e-01	ci left: 2.789181e-04	ci right 3.528950e-04	k: 286	n:910000
FNBP4   910000 perm   450 sec   (2024 perm/sec)   p_kst 3.142857e-04   p_cons 9.464000e-01   p_joint 3.142857e-04

Joint ci ratio: 2.278086e-01	ci left: 2.851065e-04	ci right 3.594033e-04	k: 295	n:920000
Cons ci ratio: 9.727393e-04	ci left: 9.459247e-01	ci right 9.468464e-01	k: 870676	n:920000
KS ci ratio: 2.278086e-01	ci left: 2.851065e-04	ci right 3.594033e-04	k: 295	n:920000
FNBP4   920000 perm   458 sec   (2010 perm/sec)   p_kst 3.206522e-04   p_cons 9.463870e-01   p_joint 3.206522e-04

Joint ci ratio: 2.247905e-01	ci left: 2.901555e-04	ci right 3.646276e-04	k: 303	n:930000
Cons ci ratio: 9.676170e-04	ci left: 9.459144e-01	ci right 9.468312e-01	k: 880128	n:930000
KS ci ratio: 2.247905e-01	ci left: 2.901555e-04	ci right 3.646276e-04	k: 303	n:930000
FNBP4   930000 perm   466 sec   (1995 perm/sec)   p_kst 3.258065e-04   p_cons 9.463742e-01   p_joint 3.258065e-04

Joint ci ratio: 2.233260e-01	ci left: 2.910852e-04	ci right 3.652423e-04	k: 307	n:940000
Cons ci ratio: 9.624334e-04	ci left: 9.459193e-01	ci right 9.468312e-01	k: 889594	n:940000
KS ci ratio: 2.233260e-01	ci left: 2.910852e-04	ci right 3.652423e-04	k: 307	n:940000
FNBP4   940000 perm   474 sec   (1982 perm/sec)   p_kst 3.265957e-04   p_cons 9.463766e-01   p_joint 3.265957e-04

Joint ci ratio: 2.229646e-01	ci left: 2.890149e-04	ci right 3.625090e-04	k: 308	n:950000
Cons ci ratio: 9.568259e-04	ci left: 9.459780e-01	ci right 9.468846e-01	k: 899111	n:950000
KS ci ratio: 2.229646e-01	ci left: 2.890149e-04	ci right 3.625090e-04	k: 308	n:950000
FNBP4   950000 perm   483 sec   (1968 perm/sec)   p_kst 3.242105e-04   p_cons 9.464326e-01   p_joint 3.242105e-04

Joint ci ratio: 2.222467e-01	ci left: 2.879715e-04	ci right 3.609322e-04	k: 310	n:960000
Cons ci ratio: 9.519107e-04	ci left: 9.459716e-01	ci right 9.468736e-01	k: 908567	n:960000
KS ci ratio: 2.222467e-01	ci left: 2.879715e-04	ci right 3.609322e-04	k: 310	n:960000
FNBP4   960000 perm   492 sec   (1952 perm/sec)   p_kst 3.229167e-04   p_cons 9.464240e-01   p_joint 3.229167e-04

Joint ci ratio: 2.211825e-01	ci left: 2.879238e-04	ci right 3.604755e-04	k: 313	n:970000
Cons ci ratio: 9.469838e-04	ci left: 9.459748e-01	ci right 9.468720e-01	k: 918032	n:970000
KS ci ratio: 2.211825e-01	ci left: 2.879238e-04	ci right 3.604755e-04	k: 313	n:970000
FNBP4   970000 perm   500 sec   (1939 perm/sec)   p_kst 3.226804e-04   p_cons 9.464247e-01   p_joint 3.226804e-04

Joint ci ratio: 2.197869e-01	ci left: 2.888420e-04	ci right 3.611039e-04	k: 317	n:980000
Cons ci ratio: 9.421896e-04	ci left: 9.459717e-01	ci right 9.468644e-01	k: 927491	n:980000
KS ci ratio: 2.197869e-01	ci left: 2.888420e-04	ci right 3.611039e-04	k: 317	n:980000
FNBP4   980000 perm   509 sec   (1926 perm/sec)   p_kst 3.234694e-04   p_cons 9.464194e-01   p_joint 3.234694e-04

Joint ci ratio: 2.177420e-01	ci left: 2.916530e-04	ci right 3.638485e-04	k: 323	n:990000
Cons ci ratio: 9.374674e-04	ci left: 9.459687e-01	ci right 9.468569e-01	k: 936950	n:990000
KS ci ratio: 2.177420e-01	ci left: 2.916530e-04	ci right 3.638485e-04	k: 323	n:990000
FNBP4   990000 perm   518 sec   (1913 perm/sec)   p_kst 3.262626e-04   p_cons 9.464141e-01   p_joint 3.262626e-04

Joint ci ratio: 2.174070e-01	ci left: 2.896820e-04	ci right 3.612644e-04	k: 324	n:1000000
Cons ci ratio: 9.324936e-04	ci left: 9.460009e-01	ci right 9.468845e-01	k: 946444	n:1000000
KS ci ratio: 2.174070e-01	ci left: 2.896820e-04	ci right 3.612644e-04	k: 324	n:1000000
FNBP4   1000000 perm   526 sec   (1900 perm/sec)   p_kst 3.240000e-04   p_cons 9.464440e-01   p_joint 3.240000e-04

Joint ci ratio: 2.170736e-01	ci left: 2.877500e-04	ci right 3.587315e-04	k: 325	n:1010000
Cons ci ratio: 9.277338e-04	ci left: 9.460176e-01	ci right 9.468966e-01	k: 955923	n:1010000
KS ci ratio: 2.170736e-01	ci left: 2.877500e-04	ci right 3.587315e-04	k: 325	n:1010000
FNBP4   1010000 perm   535 sec   (1887 perm/sec)   p_kst 3.217822e-04   p_cons 9.464584e-01   p_joint 3.217822e-04

Joint ci ratio: 2.157539e-01	ci left: 2.886380e-04	ci right 3.593483e-04	k: 329	n:1020000
Cons ci ratio: 9.230460e-04	ci left: 9.460340e-01	ci right 9.469086e-01	k: 965402	n:1020000
KS ci ratio: 2.157539e-01	ci left: 2.886380e-04	ci right 3.593483e-04	k: 329	n:1020000
FNBP4   1020000 perm   544 sec   (1875 perm/sec)   p_kst 3.225490e-04   p_cons 9.464725e-01   p_joint 3.225490e-04

Joint ci ratio: 2.147798e-01	ci left: 2.885913e-04	ci right 3.589289e-04	k: 332	n:1030000
Cons ci ratio: 9.185958e-04	ci left: 9.460315e-01	ci right 9.469019e-01	k: 974862	n:1030000
KS ci ratio: 2.147798e-01	ci left: 2.885913e-04	ci right 3.589289e-04	k: 332	n:1030000
FNBP4   1030000 perm   553 sec   (1864 perm/sec)   p_kst 3.223301e-04   p_cons 9.464680e-01   p_joint 3.223301e-04

Joint ci ratio: 2.135013e-01	ci left: 2.894563e-04	ci right 3.595297e-04	k: 336	n:1040000
Cons ci ratio: 9.144869e-04	ci left: 9.459982e-01	ci right 9.468647e-01	k: 984290	n:1040000
KS ci ratio: 2.135013e-01	ci left: 2.894563e-04	ci right 3.595297e-04	k: 336	n:1040000
FNBP4   1040000 perm   561 sec   (1852 perm/sec)   p_kst 3.230769e-04   p_cons 9.464327e-01   p_joint 3.230769e-04

Joint ci ratio: 2.119347e-01	ci left: 2.912078e-04	ci right 3.611208e-04	k: 341	n:1050000
Cons ci ratio: 9.098424e-04	ci left: 9.460315e-01	ci right 9.468936e-01	k: 993787	n:1050000
KS ci ratio: 2.119347e-01	ci left: 2.912078e-04	ci right 3.611208e-04	k: 341	n:1050000
FNBP4   1050000 perm   570 sec   (1841 perm/sec)   p_kst 3.247619e-04   p_cons 9.464638e-01   p_joint 3.247619e-04

Joint ci ratio: 2.100995e-01	ci left: 2.938219e-04	ci right 3.636730e-04	k: 347	n:1060000
Cons ci ratio: 9.056217e-04	ci left: 9.460245e-01	ci right 9.468825e-01	k: 1003242	n:1060000
KS ci ratio: 2.100995e-01	ci left: 2.938219e-04	ci right 3.636730e-04	k: 347	n:1060000
FNBP4   1060000 perm   580 sec   (1829 perm/sec)   p_kst 3.273585e-04   p_cons 9.464547e-01   p_joint 3.273585e-04

Joint ci ratio: 2.097985e-01	ci left: 2.919613e-04	ci right 3.612579e-04	k: 348	n:1070000
Cons ci ratio: 9.015423e-04	ci left: 9.460082e-01	ci right 9.468623e-01	k: 1012687	n:1070000
KS ci ratio: 2.097985e-01	ci left: 2.919613e-04	ci right 3.612579e-04	k: 348	n:1070000
FNBP4   1070000 perm   589 sec   (1816 perm/sec)   p_kst 3.252336e-04   p_cons 9.464364e-01   p_joint 3.252336e-04

Joint ci ratio: 2.086064e-01	ci left: 2.927676e-04	ci right 3.618104e-04	k: 352	n:1080000
Cons ci ratio: 8.974764e-04	ci left: 9.459968e-01	ci right 9.468471e-01	k: 1022137	n:1080000
KS ci ratio: 2.086064e-01	ci left: 2.927676e-04	ci right 3.618104e-04	k: 352	n:1080000
FNBP4   1080000 perm   598 sec   (1805 perm/sec)   p_kst 3.259259e-04   p_cons 9.464231e-01   p_joint 3.259259e-04

Joint ci ratio: 2.083117e-01	ci left: 2.909512e-04	ci right 3.594563e-04	k: 353	n:1090000
Cons ci ratio: 8.935701e-04	ci left: 9.459737e-01	ci right 9.468203e-01	k: 1031574	n:1090000
KS ci ratio: 2.083117e-01	ci left: 2.909512e-04	ci right 3.594563e-04	k: 353	n:1090000
FNBP4   1090000 perm   608 sec   (1793 perm/sec)   p_kst 3.238532e-04   p_cons 9.463982e-01   p_joint 3.238532e-04

Joint ci ratio: 2.077259e-01	ci left: 2.900296e-04	ci right 3.581013e-04	k: 355	n:1100000
Cons ci ratio: 8.895547e-04	ci left: 9.459693e-01	ci right 9.468120e-01	k: 1041031	n:1100000
KS ci ratio: 2.077259e-01	ci left: 2.900296e-04	ci right 3.581013e-04	k: 355	n:1100000
FNBP4   1100000 perm   618 sec   (1781 perm/sec)   p_kst 3.227273e-04   p_cons 9.463918e-01   p_joint 3.227273e-04

Joint ci ratio: 2.071449e-01	ci left: 2.891250e-04	ci right 3.567704e-04	k: 357	n:1110000
Cons ci ratio: 8.854908e-04	ci left: 9.459767e-01	ci right 9.468156e-01	k: 1050501	n:1110000
KS ci ratio: 2.071449e-01	ci left: 2.891250e-04	ci right 3.567704e-04	k: 357	n:1110000
FNBP4   1110000 perm   627 sec   (1770 perm/sec)   p_kst 3.216216e-04   p_cons 9.463973e-01   p_joint 3.216216e-04

Joint ci ratio: 2.062824e-01	ci left: 2.890834e-04	ci right 3.564020e-04	k: 360	n:1120000
Cons ci ratio: 8.815828e-04	ci left: 9.459723e-01	ci right 9.468075e-01	k: 1059958	n:1120000
KS ci ratio: 2.062824e-01	ci left: 2.890834e-04	ci right 3.564020e-04	k: 360	n:1120000
FNBP4   1120000 perm   637 sec   (1759 perm/sec)   p_kst 3.214286e-04   p_cons 9.463911e-01   p_joint 3.214286e-04

Joint ci ratio: 2.051489e-01	ci left: 2.898826e-04	ci right 3.569699e-04	k: 364	n:1130000
Cons ci ratio: 8.777721e-04	ci left: 9.459627e-01	ci right 9.467943e-01	k: 1069409	n:1130000
KS ci ratio: 2.051489e-01	ci left: 2.898826e-04	ci right 3.569699e-04	k: 364	n:1130000
FNBP4   1130000 perm   646 sec   (1748 perm/sec)   p_kst 3.221239e-04   p_cons 9.463796e-01   p_joint 3.221239e-04

Joint ci ratio: 2.043111e-01	ci left: 2.898365e-04	ci right 3.566049e-04	k: 367	n:1140000
Cons ci ratio: 8.738518e-04	ci left: 9.459718e-01	ci right 9.467996e-01	k: 1078881	n:1140000
KS ci ratio: 2.043111e-01	ci left: 2.898365e-04	ci right 3.566049e-04	k: 367	n:1140000
FNBP4   1140000 perm   656 sec   (1737 perm/sec)   p_kst 3.219298e-04   p_cons 9.463868e-01   p_joint 3.219298e-04

Joint ci ratio: 2.037582e-01	ci left: 2.889664e-04	ci right 3.553319e-04	k: 369	n:1150000
Cons ci ratio: 8.703114e-04	ci left: 9.459423e-01	ci right 9.467668e-01	k: 1088309	n:1150000
KS ci ratio: 2.037582e-01	ci left: 2.889664e-04	ci right 3.553319e-04	k: 369	n:1150000
FNBP4   1150000 perm   666 sec   (1727 perm/sec)   p_kst 3.208696e-04   p_cons 9.463557e-01   p_joint 3.208696e-04

Joint ci ratio: 2.026656e-01	ci left: 2.897482e-04	ci right 3.558921e-04	k: 373	n:1160000
Cons ci ratio: 8.664383e-04	ci left: 9.459574e-01	ci right 9.467783e-01	k: 1097788	n:1160000
KS ci ratio: 2.026656e-01	ci left: 2.897482e-04	ci right 3.558921e-04	k: 373	n:1160000
FNBP4   1160000 perm   676 sec   (1717 perm/sec)   p_kst 3.215517e-04   p_cons 9.463690e-01   p_joint 3.215517e-04

Joint ci ratio: 2.013242e-01	ci left: 2.913291e-04	ci right 3.573397e-04	k: 378	n:1170000
Cons ci ratio: 8.626018e-04	ci left: 9.459741e-01	ci right 9.467912e-01	k: 1107269	n:1170000
KS ci ratio: 2.013242e-01	ci left: 2.913291e-04	ci right 3.573397e-04	k: 378	n:1170000
FNBP4   1170000 perm   686 sec   (1706 perm/sec)   p_kst 3.230769e-04   p_cons 9.463838e-01   p_joint 3.230769e-04

Joint ci ratio: 2.002700e-01	ci left: 2.920796e-04	ci right 3.578714e-04	k: 382	n:1180000
Cons ci ratio: 8.590167e-04	ci left: 9.459666e-01	ci right 9.467804e-01	k: 1116722	n:1180000
KS ci ratio: 2.002700e-01	ci left: 2.920796e-04	ci right 3.578714e-04	k: 382	n:1180000
FNBP4   1180000 perm   696 sec   (1696 perm/sec)   p_kst 3.237288e-04   p_cons 9.463746e-01   p_joint 3.237288e-04

Joint ci ratio: 1.997493e-01	ci left: 2.912216e-04	ci right 3.566288e-04	k: 384	n:1190000
Cons ci ratio: 8.554191e-04	ci left: 9.459660e-01	ci right 9.467764e-01	k: 1126183	n:1190000
KS ci ratio: 1.997493e-01	ci left: 2.912216e-04	ci right 3.566288e-04	k: 384	n:1190000
FNBP4   1190000 perm   706 sec   (1685 perm/sec)   p_kst 3.226891e-04   p_cons 9.463723e-01   p_joint 3.226891e-04

Joint ci ratio: 1.984646e-01	ci left: 2.927538e-04	ci right 3.580310e-04	k: 389	n:1200000
Cons ci ratio: 8.514258e-04	ci left: 9.460181e-01	ci right 9.468247e-01	k: 1135707	n:1200000
KS ci ratio: 1.984646e-01	ci left: 2.927538e-04	ci right 3.580310e-04	k: 389	n:1200000
FNBP4   1200000 perm   716 sec   (1675 perm/sec)   p_kst 3.241667e-04   p_cons 9.464225e-01   p_joint 3.241667e-04

Joint ci ratio: 1.969551e-01	ci left: 2.950476e-04	ci right 3.602758e-04	k: 395	n:1210000
Cons ci ratio: 8.478740e-04	ci left: 9.460229e-01	ci right 9.468262e-01	k: 1145175	n:1210000
KS ci ratio: 1.969551e-01	ci left: 2.950476e-04	ci right 3.602758e-04	k: 395	n:1210000
FNBP4   1210000 perm   726 sec   (1666 perm/sec)   p_kst 3.264463e-04   p_cons 9.464256e-01   p_joint 3.264463e-04

Joint ci ratio: 1.964597e-01	ci left: 2.941878e-04	ci right 3.590428e-04	k: 397	n:1220000
Cons ci ratio: 8.443801e-04	ci left: 9.460260e-01	ci right 9.468260e-01	k: 1154641	n:1220000
KS ci ratio: 1.964597e-01	ci left: 2.941878e-04	ci right 3.590428e-04	k: 397	n:1220000
FNBP4   1220000 perm   737 sec   (1654 perm/sec)   p_kst 3.254098e-04   p_cons 9.464270e-01   p_joint 3.254098e-04

Joint ci ratio: 1.952370e-01	ci left: 2.956617e-04	ci right 3.603878e-04	k: 402	n:1230000
Cons ci ratio: 8.409424e-04	ci left: 9.460274e-01	ci right 9.468241e-01	k: 1164105	n:1230000
KS ci ratio: 1.952370e-01	ci left: 2.956617e-04	ci right 3.603878e-04	k: 402	n:1230000
FNBP4   1230000 perm   748 sec   (1645 perm/sec)   p_kst 3.268293e-04   p_cons 9.464268e-01   p_joint 3.268293e-04

Joint ci ratio: 1.945144e-01	ci left: 2.955787e-04	ci right 3.600187e-04	k: 405	n:1240000
Cons ci ratio: 8.375064e-04	ci left: 9.460337e-01	ci right 9.468271e-01	k: 1173575	n:1240000
KS ci ratio: 1.945144e-01	ci left: 2.955787e-04	ci right 3.600187e-04	k: 405	n:1240000
FNBP4   1240000 perm   758 sec   (1635 perm/sec)   p_kst 3.266129e-04   p_cons 9.464315e-01   p_joint 3.266129e-04

Joint ci ratio: 1.940372e-01	ci left: 2.947362e-04	ci right 3.588163e-04	k: 407	n:1250000
Cons ci ratio: 8.341319e-04	ci left: 9.460374e-01	ci right 9.468277e-01	k: 1183042	n:1250000
KS ci ratio: 1.940372e-01	ci left: 2.947362e-04	ci right 3.588163e-04	k: 407	n:1250000
FNBP4   1250000 perm   769 sec   (1626 perm/sec)   p_kst 3.256000e-04   p_cons 9.464336e-01   p_joint 3.256000e-04

Joint ci ratio: 1.938000e-01	ci left: 2.931521e-04	ci right 3.568007e-04	k: 408	n:1260000
Cons ci ratio: 8.306874e-04	ci left: 9.460547e-01	ci right 9.468417e-01	k: 1192526	n:1260000
KS ci ratio: 1.938000e-01	ci left: 2.931521e-04	ci right 3.568007e-04	k: 408	n:1260000
FNBP4   1260000 perm   780 sec   (1616 perm/sec)   p_kst 3.238095e-04   p_cons 9.464492e-01   p_joint 3.238095e-04

Joint ci ratio: 1.933280e-01	ci left: 2.923423e-04	ci right 3.556423e-04	k: 410	n:1270000
Cons ci ratio: 8.275614e-04	ci left: 9.460377e-01	ci right 9.468217e-01	k: 1201967	n:1270000
KS ci ratio: 1.933280e-01	ci left: 2.923423e-04	ci right 3.556423e-04	k: 410	n:1270000
FNBP4   1270000 perm   790 sec   (1607 perm/sec)   p_kst 3.228346e-04   p_cons 9.464307e-01   p_joint 3.228346e-04

Joint ci ratio: 1.912450e-01	ci left: 2.967512e-04	ci right 3.602331e-04	k: 419	n:1280000
Cons ci ratio: 8.244006e-04	ci left: 9.460296e-01	ci right 9.468106e-01	k: 1211419	n:1280000
KS ci ratio: 1.912450e-01	ci left: 2.967512e-04	ci right 3.602331e-04	k: 419	n:1280000
FNBP4   1280000 perm   801 sec   (1598 perm/sec)   p_kst 3.273437e-04   p_cons 9.464211e-01   p_joint 3.273437e-04

Joint ci ratio: 1.905656e-01	ci left: 2.966653e-04	ci right 3.598772e-04	k: 422	n:1290000
Cons ci ratio: 8.213697e-04	ci left: 9.460099e-01	ci right 9.467880e-01	k: 1220856	n:1290000
KS ci ratio: 1.905656e-01	ci left: 2.966653e-04	ci right 3.598772e-04	k: 422	n:1290000
FNBP4   1290000 perm   812 sec   (1589 perm/sec)   p_kst 3.271318e-04   p_cons 9.464000e-01   p_joint 3.271318e-04

Joint ci ratio: 1.892281e-01	ci left: 2.987792e-04	ci right 3.619434e-04	k: 428	n:1300000
Cons ci ratio: 8.180742e-04	ci left: 9.460277e-01	ci right 9.468027e-01	k: 1230341	n:1300000
KS ci ratio: 1.892281e-01	ci left: 2.987792e-04	ci right 3.619434e-04	k: 428	n:1300000
FNBP4   1300000 perm   823 sec   (1580 perm/sec)   p_kst 3.292308e-04   p_cons 9.464162e-01   p_joint 3.292308e-04

Joint ci ratio: 1.890081e-01	ci left: 2.972257e-04	ci right 3.599799e-04	k: 429	n:1310000
Cons ci ratio: 8.148302e-04	ci left: 9.460436e-01	ci right 9.468155e-01	k: 1239824	n:1310000
KS ci ratio: 1.890081e-01	ci left: 2.972257e-04	ci right 3.599799e-04	k: 429	n:1310000
FNBP4   1310000 perm   834 sec   (1572 perm/sec)   p_kst 3.274809e-04   p_cons 9.464305e-01   p_joint 3.274809e-04

Joint ci ratio: 1.885702e-01	ci left: 2.964175e-04	ci right 3.588395e-04	k: 431	n:1320000
Cons ci ratio: 8.115881e-04	ci left: 9.460638e-01	ci right 9.468327e-01	k: 1249313	n:1320000
KS ci ratio: 1.885702e-01	ci left: 2.964175e-04	ci right 3.588395e-04	k: 431	n:1320000
FNBP4   1320000 perm   844 sec   (1563 perm/sec)   p_kst 3.265152e-04   p_cons 9.464492e-01   p_joint 3.265152e-04

Joint ci ratio: 1.881352e-01	ci left: 2.956216e-04	ci right 3.577161e-04	k: 433	n:1330000
Cons ci ratio: 8.085102e-04	ci left: 9.460679e-01	ci right 9.468339e-01	k: 1258781	n:1330000
KS ci ratio: 1.881352e-01	ci left: 2.956216e-04	ci right 3.577161e-04	k: 433	n:1330000
FNBP4   1330000 perm   856 sec   (1554 perm/sec)   p_kst 3.255639e-04   p_cons 9.464519e-01   p_joint 3.255639e-04

Joint ci ratio: 1.877033e-01	ci left: 2.948378e-04	ci right 3.566092e-04	k: 435	n:1340000
Cons ci ratio: 8.055797e-04	ci left: 9.460578e-01	ci right 9.468209e-01	k: 1268230	n:1340000
KS ci ratio: 1.877033e-01	ci left: 2.948378e-04	ci right 3.566092e-04	k: 435	n:1340000
FNBP4   1340000 perm   867 sec   (1546 perm/sec)   p_kst 3.246269e-04   p_cons 9.464403e-01   p_joint 3.246269e-04

Joint ci ratio: 1.870609e-01	ci left: 2.947718e-04	ci right 3.562940e-04	k: 438	n:1350000
Cons ci ratio: 8.029798e-04	ci left: 9.460098e-01	ci right 9.467705e-01	k: 1277628	n:1350000
KS ci ratio: 1.870609e-01	ci left: 2.947718e-04	ci right 3.562940e-04	k: 438	n:1350000
FNBP4   1350000 perm   878 sec   (1538 perm/sec)   p_kst 3.244444e-04   p_cons 9.463911e-01   p_joint 3.244444e-04

Joint ci ratio: 1.866363e-01	ci left: 2.940062e-04	ci right 3.552135e-04	k: 440	n:1360000
Cons ci ratio: 8.002129e-04	ci left: 9.459870e-01	ci right 9.467450e-01	k: 1287059	n:1360000
KS ci ratio: 1.866363e-01	ci left: 2.940062e-04	ci right 3.552135e-04	k: 440	n:1360000
FNBP4   1360000 perm   889 sec   (1530 perm/sec)   p_kst 3.235294e-04   p_cons 9.463669e-01   p_joint 3.235294e-04

Joint ci ratio: 1.857956e-01	ci left: 2.946438e-04	ci right 3.556764e-04	k: 444	n:1370000
Cons ci ratio: 7.971648e-04	ci left: 9.460040e-01	ci right 9.467591e-01	k: 1296544	n:1370000
KS ci ratio: 1.857956e-01	ci left: 2.946438e-04	ci right 3.556764e-04	k: 444	n:1370000
FNBP4   1370000 perm   900 sec   (1522 perm/sec)   p_kst 3.240876e-04   p_cons 9.463825e-01   p_joint 3.240876e-04

Joint ci ratio: 1.853795e-01	ci left: 2.938906e-04	ci right 3.546156e-04	k: 446	n:1380000
Cons ci ratio: 7.941398e-04	ci left: 9.460222e-01	ci right 9.467745e-01	k: 1306031	n:1380000
KS ci ratio: 1.853795e-01	ci left: 2.938906e-04	ci right 3.546156e-04	k: 446	n:1380000
FNBP4   1380000 perm   912 sec   (1514 perm/sec)   p_kst 3.231884e-04   p_cons 9.463993e-01   p_joint 3.231884e-04

Joint ci ratio: 1.849663e-01	ci left: 2.931484e-04	ci right 3.535699e-04	k: 448	n:1390000
Cons ci ratio: 7.912274e-04	ci left: 9.460301e-01	ci right 9.467796e-01	k: 1315504	n:1390000
KS ci ratio: 1.849663e-01	ci left: 2.931484e-04	ci right 3.535699e-04	k: 448	n:1390000
FNBP4   1390000 perm   923 sec   (1506 perm/sec)   p_kst 3.223022e-04   p_cons 9.464058e-01   p_joint 3.223022e-04

Joint ci ratio: 1.843515e-01	ci left: 2.930983e-04	ci right 3.532862e-04	k: 451	n:1400000
Cons ci ratio: 7.882136e-04	ci left: 9.460550e-01	ci right 9.468017e-01	k: 1325001	n:1400000
KS ci ratio: 1.843515e-01	ci left: 2.930983e-04	ci right 3.532862e-04	k: 451	n:1400000
FNBP4   1400000 perm   935 sec   (1498 perm/sec)   p_kst 3.221429e-04   p_cons 9.464293e-01   p_joint 3.221429e-04

Joint ci ratio: 1.831398e-01	ci left: 2.950792e-04	ci right 3.552314e-04	k: 457	n:1410000
Cons ci ratio: 7.853822e-04	ci left: 9.460604e-01	ci right 9.468044e-01	k: 1334471	n:1410000
KS ci ratio: 1.831398e-01	ci left: 2.950792e-04	ci right 3.552314e-04	k: 457	n:1410000
FNBP4   1410000 perm   946 sec   (1490 perm/sec)   p_kst 3.241135e-04   p_cons 9.464333e-01   p_joint 3.241135e-04

Joint ci ratio: 1.825429e-01	ci left: 2.950172e-04	ci right 3.549390e-04	k: 460	n:1420000
Cons ci ratio: 7.824941e-04	ci left: 9.460770e-01	ci right 9.468183e-01	k: 1343957	n:1420000
KS ci ratio: 1.825429e-01	ci left: 2.950172e-04	ci right 3.549390e-04	k: 460	n:1420000
FNBP4   1420000 perm   958 sec   (1482 perm/sec)   p_kst 3.239437e-04   p_cons 9.464486e-01   p_joint 3.239437e-04

Joint ci ratio: 1.809790e-01	ci left: 2.982940e-04	ci right 3.583055e-04	k: 468	n:1430000
Cons ci ratio: 7.796429e-04	ci left: 9.460927e-01	ci right 9.468313e-01	k: 1353442	n:1430000
KS ci ratio: 1.809790e-01	ci left: 2.982940e-04	ci right 3.583055e-04	k: 468	n:1430000
FNBP4   1430000 perm   970 sec   (1475 perm/sec)   p_kst 3.272727e-04   p_cons 9.464629e-01   p_joint 3.272727e-04

Joint ci ratio: 1.805945e-01	ci left: 2.975486e-04	ci right 3.572690e-04	k: 470	n:1440000
Cons ci ratio: 7.770090e-04	ci left: 9.460838e-01	ci right 9.468199e-01	k: 1362892	n:1440000
KS ci ratio: 1.805945e-01	ci left: 2.975486e-04	ci right 3.572690e-04	k: 470	n:1440000
FNBP4   1440000 perm   981 sec   (1467 perm/sec)   p_kst 3.263889e-04   p_cons 9.464528e-01   p_joint 3.263889e-04

Joint ci ratio: 1.794549e-01	ci left: 2.994480e-04	ci right 3.591292e-04	k: 476	n:1450000
Cons ci ratio: 7.744384e-04	ci left: 9.460702e-01	ci right 9.468039e-01	k: 1372335	n:1450000
KS ci ratio: 1.794549e-01	ci left: 2.994480e-04	ci right 3.591292e-04	k: 476	n:1450000
FNBP4   1450000 perm   993 sec   (1460 perm/sec)   p_kst 3.282759e-04   p_cons 9.464379e-01   p_joint 3.282759e-04

Joint ci ratio: 1.781522e-01	ci left: 3.019770e-04	ci right 3.616783e-04	k: 483	n:1460000
Cons ci ratio: 7.715489e-04	ci left: 9.461021e-01	ci right 9.468331e-01	k: 1381844	n:1460000
KS ci ratio: 1.781522e-01	ci left: 3.019770e-04	ci right 3.616783e-04	k: 483	n:1460000
FNBP4   1460000 perm   1005 sec   (1452 perm/sec)   p_kst 3.308219e-04   p_cons 9.464685e-01   p_joint 3.308219e-04

Joint ci ratio: 1.779686e-01	ci left: 3.005727e-04	ci right 3.599284e-04	k: 484	n:1470000
Cons ci ratio: 7.690320e-04	ci left: 9.460886e-01	ci right 9.468171e-01	k: 1391287	n:1470000
KS ci ratio: 1.779686e-01	ci left: 3.005727e-04	ci right 3.599284e-04	k: 484	n:1470000
FNBP4   1470000 perm   1017 sec   (1445 perm/sec)   p_kst 3.292517e-04   p_cons 9.464537e-01   p_joint 3.292517e-04

Joint ci ratio: 1.772392e-01	ci left: 3.011243e-04	ci right 3.603192e-04	k: 488	n:1480000
Cons ci ratio: 7.663556e-04	ci left: 9.460996e-01	ci right 9.468256e-01	k: 1400766	n:1480000
KS ci ratio: 1.772392e-01	ci left: 3.011243e-04	ci right 3.603192e-04	k: 488	n:1480000
FNBP4   1480000 perm   1030 sec   (1437 perm/sec)   p_kst 3.297297e-04   p_cons 9.464635e-01   p_joint 3.297297e-04

Joint ci ratio: 1.761616e-01	ci left: 3.029521e-04	ci right 3.621057e-04	k: 494	n:1490000
Cons ci ratio: 7.637221e-04	ci left: 9.461085e-01	ci right 9.468320e-01	k: 1410242	n:1490000
KS ci ratio: 1.761616e-01	ci left: 3.029521e-04	ci right 3.621057e-04	k: 494	n:1490000
FNBP4   1490000 perm   1042 sec   (1430 perm/sec)   p_kst 3.315436e-04   p_cons 9.464711e-01   p_joint 3.315436e-04

Joint ci ratio: 1.756302e-01	ci left: 3.028444e-04	ci right 3.617796e-04	k: 497	n:1500000
Cons ci ratio: 7.611707e-04	ci left: 9.461099e-01	ci right 9.468310e-01	k: 1419707	n:1500000
KS ci ratio: 1.756302e-01	ci left: 3.028444e-04	ci right 3.617796e-04	k: 497	n:1500000
FNBP4   1500000 perm   1054 sec   (1423 perm/sec)   p_kst 3.313333e-04   p_cons 9.464713e-01   p_joint 3.313333e-04

Joint ci ratio: 1.752786e-01	ci left: 3.021051e-04	ci right 3.607664e-04	k: 499	n:1510000
Cons ci ratio: 7.585107e-04	ci left: 9.461293e-01	ci right 9.468478e-01	k: 1429199	n:1510000
KS ci ratio: 1.752786e-01	ci left: 3.021051e-04	ci right 3.607664e-04	k: 499	n:1510000
FNBP4   1510000 perm   1066 sec   (1416 perm/sec)   p_kst 3.304636e-04   p_cons 9.464894e-01   p_joint 3.304636e-04

Joint ci ratio: 1.749292e-01	ci left: 3.013757e-04	ci right 3.597663e-04	k: 501	n:1520000
Cons ci ratio: 7.563251e-04	ci left: 9.460883e-01	ci right 9.468047e-01	k: 1438600	n:1520000
KS ci ratio: 1.749292e-01	ci left: 3.013757e-04	ci right 3.597663e-04	k: 501	n:1520000
FNBP4   1520000 perm   1079 sec   (1409 perm/sec)   p_kst 3.296053e-04   p_cons 9.464474e-01   p_joint 3.296053e-04

Joint ci ratio: 1.747554e-01	ci left: 3.000309e-04	ci right 3.580971e-04	k: 502	n:1530000
Cons ci ratio: 7.539003e-04	ci left: 9.460826e-01	ci right 9.467968e-01	k: 1448054	n:1530000
KS ci ratio: 1.747554e-01	ci left: 3.000309e-04	ci right 3.580971e-04	k: 502	n:1530000
FNBP4   1530000 perm   1091 sec   (1402 perm/sec)   p_kst 3.281046e-04   p_cons 9.464405e-01   p_joint 3.281046e-04

Joint ci ratio: 1.744091e-01	ci left: 2.993246e-04	ci right 3.571272e-04	k: 504	n:1540000
Cons ci ratio: 7.512772e-04	ci left: 9.461070e-01	ci right 9.468186e-01	k: 1457554	n:1540000
KS ci ratio: 1.744091e-01	ci left: 2.993246e-04	ci right 3.571272e-04	k: 504	n:1540000
FNBP4   1540000 perm   1104 sec   (1395 perm/sec)   p_kst 3.272727e-04   p_cons 9.464636e-01   p_joint 3.272727e-04

Joint ci ratio: 1.737224e-01	ci left: 2.998617e-04	ci right 3.575161e-04	k: 508	n:1550000
Cons ci ratio: 7.488338e-04	ci left: 9.461103e-01	ci right 9.468197e-01	k: 1467022	n:1550000
KS ci ratio: 1.737224e-01	ci left: 2.998617e-04	ci right 3.575161e-04	k: 508	n:1550000
FNBP4   1550000 perm   1116 sec   (1388 perm/sec)   p_kst 3.277419e-04   p_cons 9.464658e-01   p_joint 3.277419e-04

Joint ci ratio: 1.728752e-01	ci left: 3.010056e-04	ci right 3.585683e-04	k: 513	n:1560000
Cons ci ratio: 7.465179e-04	ci left: 9.460994e-01	ci right 9.468066e-01	k: 1476468	n:1560000
KS ci ratio: 1.728752e-01	ci left: 3.010056e-04	ci right 3.585683e-04	k: 513	n:1560000
FNBP4   1560000 perm   1129 sec   (1381 perm/sec)   p_kst 3.288462e-04   p_cons 9.464538e-01   p_joint 3.288462e-04

Joint ci ratio: 1.725400e-01	ci left: 3.003072e-04	ci right 3.576134e-04	k: 515	n:1570000
Cons ci ratio: 7.441391e-04	ci left: 9.461002e-01	ci right 9.468051e-01	k: 1485932	n:1570000
KS ci ratio: 1.725400e-01	ci left: 3.003072e-04	ci right 3.576134e-04	k: 515	n:1570000
FNBP4   1570000 perm   1142 sec   (1375 perm/sec)   p_kst 3.280255e-04   p_cons 9.464535e-01   p_joint 3.280255e-04

Joint ci ratio: 1.722066e-01	ci left: 2.996177e-04	ci right 3.566704e-04	k: 517	n:1580000
Cons ci ratio: 7.417181e-04	ci left: 9.461099e-01	ci right 9.468125e-01	k: 1495410	n:1580000
KS ci ratio: 1.722066e-01	ci left: 2.996177e-04	ci right 3.566704e-04	k: 517	n:1580000
FNBP4   1580000 perm   1155 sec   (1368 perm/sec)   p_kst 3.272152e-04   p_cons 9.464620e-01   p_joint 3.272152e-04

Joint ci ratio: 1.715455e-01	ci left: 3.001409e-04	ci right 3.570510e-04	k: 521	n:1590000
Cons ci ratio: 7.393665e-04	ci left: 9.461131e-01	ci right 9.468135e-01	k: 1504878	n:1590000
KS ci ratio: 1.715455e-01	ci left: 3.001409e-04	ci right 3.570510e-04	k: 521	n:1590000
FNBP4   1590000 perm   1167 sec   (1362 perm/sec)   p_kst 3.276730e-04   p_cons 9.464642e-01   p_joint 3.276730e-04

Joint ci ratio: 1.710547e-01	ci left: 3.000596e-04	ci right 3.567747e-04	k: 524	n:1600000
Cons ci ratio: 7.370371e-04	ci left: 9.461163e-01	ci right 9.468145e-01	k: 1514346	n:1600000
KS ci ratio: 1.710547e-01	ci left: 3.000596e-04	ci right 3.567747e-04	k: 524	n:1600000
FNBP4   1600000 perm   1180 sec   (1356 perm/sec)   p_kst 3.275000e-04   p_cons 9.464662e-01   p_joint 3.275000e-04

Joint ci ratio: 1.708921e-01	ci left: 2.987904e-04	ci right 3.552064e-04	k: 525	n:1610000
Cons ci ratio: 7.345223e-04	ci left: 9.461482e-01	ci right 9.468440e-01	k: 1523860	n:1610000
KS ci ratio: 1.708921e-01	ci left: 2.987904e-04	ci right 3.552064e-04	k: 525	n:1610000
FNBP4   1610000 perm   1193 sec   (1349 perm/sec)   p_kst 3.260870e-04   p_cons 9.464969e-01   p_joint 3.260870e-04

Joint ci ratio: 1.707301e-01	ci left: 2.975369e-04	ci right 3.536575e-04	k: 526	n:1620000
Cons ci ratio: 7.321534e-04	ci left: 9.461629e-01	ci right 9.468565e-01	k: 1533347	n:1620000
KS ci ratio: 1.707301e-01	ci left: 2.975369e-04	ci right 3.536575e-04	k: 526	n:1620000
FNBP4   1620000 perm   1206 sec   (1343 perm/sec)   p_kst 3.246914e-04   p_cons 9.465105e-01   p_joint 3.246914e-04

Joint ci ratio: 1.699258e-01	ci left: 2.986482e-04	ci right 3.546859e-04	k: 531	n:1630000
Cons ci ratio: 7.299222e-04	ci left: 9.461614e-01	ci right 9.468529e-01	k: 1542808	n:1630000
KS ci ratio: 1.699258e-01	ci left: 2.986482e-04	ci right 3.546859e-04	k: 531	n:1630000
FNBP4   1630000 perm   1219 sec   (1337 perm/sec)   p_kst 3.257669e-04   p_cons 9.465080e-01   p_joint 3.257669e-04

Joint ci ratio: 1.692905e-01	ci left: 2.991627e-04	ci right 3.550656e-04	k: 535	n:1640000
Cons ci ratio: 7.276368e-04	ci left: 9.461704e-01	ci right 9.468597e-01	k: 1552286	n:1640000
KS ci ratio: 1.692905e-01	ci left: 2.991627e-04	ci right 3.550656e-04	k: 535	n:1640000
FNBP4   1640000 perm   1232 sec   (1331 perm/sec)   p_kst 3.262195e-04   p_cons 9.465159e-01   p_joint 3.262195e-04

Joint ci ratio: 1.689756e-01	ci left: 2.985104e-04	ci right 3.541771e-04	k: 537	n:1650000
Cons ci ratio: 7.255551e-04	ci left: 9.461537e-01	ci right 9.468411e-01	k: 1561722	n:1650000
KS ci ratio: 1.689756e-01	ci left: 2.985104e-04	ci right 3.541771e-04	k: 537	n:1650000
FNBP4   1650000 perm   1246 sec   (1325 perm/sec)   p_kst 3.254545e-04   p_cons 9.464982e-01   p_joint 3.254545e-04

Joint ci ratio: 1.681957e-01	ci left: 2.995971e-04	ci right 3.551825e-04	k: 542	n:1660000
Cons ci ratio: 7.232931e-04	ci left: 9.461651e-01	ci right 9.468502e-01	k: 1571204	n:1660000
KS ci ratio: 1.681957e-01	ci left: 2.995971e-04	ci right 3.551825e-04	k: 542	n:1660000
FNBP4   1660000 perm   1259 sec   (1319 perm/sec)   p_kst 3.265060e-04   p_cons 9.465084e-01   p_joint 3.265060e-04

Joint ci ratio: 1.678869e-01	ci left: 2.989504e-04	ci right 3.543036e-04	k: 544	n:1670000
Cons ci ratio: 7.209669e-04	ci left: 9.461883e-01	ci right 9.468713e-01	k: 1580706	n:1670000
KS ci ratio: 1.678869e-01	ci left: 2.989504e-04	ci right 3.543036e-04	k: 544	n:1670000
FNBP4   1670000 perm   1273 sec   (1312 perm/sec)   p_kst 3.257485e-04   p_cons 9.465305e-01   p_joint 3.257485e-04

Joint ci ratio: 1.675798e-01	ci left: 2.983114e-04	ci right 3.534351e-04	k: 546	n:1680000
Cons ci ratio: 7.188995e-04	ci left: 9.461778e-01	ci right 9.468588e-01	k: 1590152	n:1680000
KS ci ratio: 1.675798e-01	ci left: 2.983114e-04	ci right 3.534351e-04	k: 546	n:1680000
FNBP4   1680000 perm   1286 sec   (1306 perm/sec)   p_kst 3.250000e-04   p_cons 9.465190e-01   p_joint 3.250000e-04

Joint ci ratio: 1.668190e-01	ci left: 2.993810e-04	ci right 3.544260e-04	k: 551	n:1690000
Cons ci ratio: 7.167493e-04	ci left: 9.461816e-01	ci right 9.468606e-01	k: 1599622	n:1690000
KS ci ratio: 1.668190e-01	ci left: 2.993810e-04	ci right 3.544260e-04	k: 551	n:1690000
FNBP4   1690000 perm   1300 sec   (1300 perm/sec)   p_kst 3.260355e-04   p_cons 9.465219e-01   p_joint 3.260355e-04

Joint ci ratio: 1.662178e-01	ci left: 2.998749e-04	ci right 3.547920e-04	k: 555	n:1700000
Cons ci ratio: 7.147968e-04	ci left: 9.461601e-01	ci right 9.468372e-01	k: 1609049	n:1700000
KS ci ratio: 1.662178e-01	ci left: 2.998749e-04	ci right 3.547920e-04	k: 555	n:1700000
FNBP4   1700000 perm   1314 sec   (1294 perm/sec)   p_kst 3.264706e-04   p_cons 9.464994e-01   p_joint 3.264706e-04

Joint ci ratio: 1.657712e-01	ci left: 2.998027e-04	ci right 3.545444e-04	k: 558	n:1710000
Cons ci ratio: 7.126995e-04	ci left: 9.461617e-01	ci right 9.468368e-01	k: 1618515	n:1710000
KS ci ratio: 1.657712e-01	ci left: 2.998027e-04	ci right 3.545444e-04	k: 558	n:1710000
FNBP4   1710000 perm   1328 sec   (1288 perm/sec)   p_kst 3.263158e-04   p_cons 9.465000e-01   p_joint 3.263158e-04

Joint ci ratio: 1.651812e-01	ci left: 3.002890e-04	ci right 3.549049e-04	k: 562	n:1720000
Cons ci ratio: 7.107511e-04	ci left: 9.461446e-01	ci right 9.468179e-01	k: 1627949	n:1720000
KS ci ratio: 1.651812e-01	ci left: 3.002890e-04	ci right 3.549049e-04	k: 562	n:1720000
FNBP4   1720000 perm   1342 sec   (1282 perm/sec)   p_kst 3.267442e-04   p_cons 9.464820e-01   p_joint 3.267442e-04

Joint ci ratio: 1.647429e-01	ci left: 3.002157e-04	ci right 3.546591e-04	k: 565	n:1730000
Cons ci ratio: 7.087619e-04	ci left: 9.461358e-01	ci right 9.468072e-01	k: 1637397	n:1730000
KS ci ratio: 1.647429e-01	ci left: 3.002157e-04	ci right 3.546591e-04	k: 565	n:1730000
FNBP4   1730000 perm   1355 sec   (1277 perm/sec)   p_kst 3.265896e-04   p_cons 9.464723e-01   p_joint 3.265896e-04

Joint ci ratio: 1.644527e-01	ci left: 2.995924e-04	ci right 3.538176e-04	k: 567	n:1740000
Cons ci ratio: 7.066931e-04	ci left: 9.461410e-01	ci right 9.468104e-01	k: 1646869	n:1740000
KS ci ratio: 1.644527e-01	ci left: 2.995924e-04	ci right 3.538176e-04	k: 567	n:1740000
FNBP4   1740000 perm   1369 sec   (1271 perm/sec)   p_kst 3.258621e-04   p_cons 9.464764e-01   p_joint 3.258621e-04

Joint ci ratio: 1.638766e-01	ci left: 3.000722e-04	ci right 3.541753e-04	k: 571	n:1750000
Cons ci ratio: 7.046106e-04	ci left: 9.461507e-01	ci right 9.468181e-01	k: 1656349	n:1750000
KS ci ratio: 1.638766e-01	ci left: 3.000722e-04	ci right 3.541753e-04	k: 571	n:1750000
FNBP4   1750000 perm   1382 sec   (1266 perm/sec)   p_kst 3.262857e-04   p_cons 9.464851e-01   p_joint 3.262857e-04

Joint ci ratio: 1.638768e-01	ci left: 2.983673e-04	ci right 3.521629e-04	k: 571	n:1760000
Cons ci ratio: 7.027827e-04	ci left: 9.461261e-01	ci right 9.467918e-01	k: 1665769	n:1760000
KS ci ratio: 1.638768e-01	ci left: 2.983673e-04	ci right 3.521629e-04	k: 571	n:1760000
FNBP4   1760000 perm   1397 sec   (1260 perm/sec)   p_kst 3.244318e-04   p_cons 9.464597e-01   p_joint 3.244318e-04

Joint ci ratio: 1.634487e-01	ci left: 2.983071e-04	ci right 3.519376e-04	k: 574	n:1770000
Cons ci ratio: 7.006680e-04	ci left: 9.461454e-01	ci right 9.468091e-01	k: 1675266	n:1770000
KS ci ratio: 1.634487e-01	ci left: 2.983071e-04	ci right 3.519376e-04	k: 574	n:1770000
FNBP4   1770000 perm   1411 sec   (1255 perm/sec)   p_kst 3.242938e-04   p_cons 9.464780e-01   p_joint 3.242938e-04

Joint ci ratio: 1.626024e-01	ci left: 2.998645e-04	ci right 3.534686e-04	k: 580	n:1780000
Cons ci ratio: 6.989092e-04	ci left: 9.461155e-01	ci right 9.467775e-01	k: 1684676	n:1780000
KS ci ratio: 1.626024e-01	ci left: 2.998645e-04	ci right 3.534686e-04	k: 580	n:1780000
FNBP4   1780000 perm   1425 sec   (1249 perm/sec)   p_kst 3.258427e-04   p_cons 9.464472e-01   p_joint 3.258427e-04

Joint ci ratio: 1.620455e-01	ci left: 3.003331e-04	ci right 3.538192e-04	k: 584	n:1790000
Cons ci ratio: 6.969484e-04	ci left: 9.461172e-01	ci right 9.467774e-01	k: 1694142	n:1790000
KS ci ratio: 1.620455e-01	ci left: 3.003331e-04	ci right 3.538192e-04	k: 584	n:1790000
FNBP4   1790000 perm   1439 sec   (1244 perm/sec)   p_kst 3.262570e-04   p_cons 9.464480e-01   p_joint 3.262570e-04

Joint ci ratio: 1.612207e-01	ci left: 3.018631e-04	ci right 3.553216e-04	k: 590	n:1800000
Cons ci ratio: 6.948820e-04	ci left: 9.461368e-01	ci right 9.467951e-01	k: 1703640	n:1800000
KS ci ratio: 1.612207e-01	ci left: 3.018631e-04	ci right 3.553216e-04	k: 590	n:1800000
FNBP4   1800000 perm   1454 sec   (1238 perm/sec)   p_kst 3.277778e-04   p_cons 9.464667e-01   p_joint 3.277778e-04

Joint ci ratio: 1.609487e-01	ci left: 3.012558e-04	ci right 3.545080e-04	k: 592	n:1810000
Cons ci ratio: 6.931474e-04	ci left: 9.461102e-01	ci right 9.467668e-01	k: 1713055	n:1810000
KS ci ratio: 1.609487e-01	ci left: 3.012558e-04	ci right 3.545080e-04	k: 592	n:1810000
FNBP4   1810000 perm   1468 sec   (1233 perm/sec)   p_kst 3.270718e-04   p_cons 9.464392e-01   p_joint 3.270718e-04

Joint ci ratio: 1.601405e-01	ci left: 3.027648e-04	ci right 3.559891e-04	k: 598	n:1820000
Cons ci ratio: 6.911970e-04	ci left: 9.461175e-01	ci right 9.467723e-01	k: 1722531	n:1820000
KS ci ratio: 1.601405e-01	ci left: 3.027648e-04	ci right 3.559891e-04	k: 598	n:1820000
FNBP4   1820000 perm   1482 sec   (1228 perm/sec)   p_kst 3.285714e-04   p_cons 9.464456e-01   p_joint 3.285714e-04

Joint ci ratio: 1.600070e-01	ci left: 3.016349e-04	ci right 3.546122e-04	k: 599	n:1830000
Cons ci ratio: 6.893039e-04	ci left: 9.461187e-01	ci right 9.467717e-01	k: 1731996	n:1830000
KS ci ratio: 1.600070e-01	ci left: 3.016349e-04	ci right 3.546122e-04	k: 599	n:1830000
FNBP4   1830000 perm   1497 sec   (1222 perm/sec)   p_kst 3.273224e-04   p_cons 9.464459e-01   p_joint 3.273224e-04

Joint ci ratio: 1.592128e-01	ci left: 3.031263e-04	ci right 3.560759e-04	k: 605	n:1840000
Cons ci ratio: 6.873930e-04	ci left: 9.461248e-01	ci right 9.467759e-01	k: 1741470	n:1840000
KS ci ratio: 1.592128e-01	ci left: 3.031263e-04	ci right 3.560759e-04	k: 605	n:1840000
FNBP4   1840000 perm   1512 sec   (1217 perm/sec)   p_kst 3.288043e-04   p_cons 9.464511e-01   p_joint 3.288043e-04

Joint ci ratio: 1.586899e-01	ci left: 3.035639e-04	ci right 3.563993e-04	k: 609	n:1850000
Cons ci ratio: 6.854431e-04	ci left: 9.461390e-01	ci right 9.467883e-01	k: 1750959	n:1850000
KS ci ratio: 1.586899e-01	ci left: 3.035639e-04	ci right 3.563993e-04	k: 609	n:1850000
FNBP4   1850000 perm   1526 sec   (1212 perm/sec)   p_kst 3.291892e-04   p_cons 9.464643e-01   p_joint 3.291892e-04

Joint ci ratio: 1.584305e-01	ci left: 3.029644e-04	ci right 3.556011e-04	k: 611	n:1860000
Cons ci ratio: 6.836294e-04	ci left: 9.461352e-01	ci right 9.467828e-01	k: 1760415	n:1860000
KS ci ratio: 1.584305e-01	ci left: 3.029644e-04	ci right 3.556011e-04	k: 611	n:1860000
FNBP4   1860000 perm   1541 sec   (1207 perm/sec)   p_kst 3.284946e-04   p_cons 9.464597e-01   p_joint 3.284946e-04

Joint ci ratio: 1.580436e-01	ci left: 3.028851e-04	ci right 3.553672e-04	k: 614	n:1870000
Cons ci ratio: 6.817976e-04	ci left: 9.461363e-01	ci right 9.467821e-01	k: 1769880	n:1870000
KS ci ratio: 1.580436e-01	ci left: 3.028851e-04	ci right 3.553672e-04	k: 614	n:1870000
FNBP4   1870000 perm   1556 sec   (1202 perm/sec)   p_kst 3.283422e-04   p_cons 9.464599e-01   p_joint 3.283422e-04

Joint ci ratio: 1.580438e-01	ci left: 3.012739e-04	ci right 3.534770e-04	k: 614	n:1880000
Cons ci ratio: 6.799733e-04	ci left: 9.461384e-01	ci right 9.467825e-01	k: 1779347	n:1880000
KS ci ratio: 1.580438e-01	ci left: 3.012739e-04	ci right 3.534770e-04	k: 614	n:1880000
FNBP4   1880000 perm   1571 sec   (1196 perm/sec)   p_kst 3.265957e-04   p_cons 9.464612e-01   p_joint 3.265957e-04

Joint ci ratio: 1.579155e-01	ci left: 3.001881e-04	ci right 3.521567e-04	k: 615	n:1890000
Cons ci ratio: 6.781034e-04	ci left: 9.461496e-01	ci right 9.467919e-01	k: 1788831	n:1890000
KS ci ratio: 1.579155e-01	ci left: 3.001881e-04	ci right 3.521567e-04	k: 615	n:1890000
FNBP4   1890000 perm   1586 sec   (1192 perm/sec)   p_kst 3.253968e-04   p_cons 9.464714e-01   p_joint 3.253968e-04

Joint ci ratio: 1.575324e-01	ci left: 3.001248e-04	ci right 3.519445e-04	k: 618	n:1900000
Cons ci ratio: 6.762699e-04	ci left: 9.461574e-01	ci right 9.467980e-01	k: 1798309	n:1900000
KS ci ratio: 1.575324e-01	ci left: 3.001248e-04	ci right 3.519445e-04	k: 618	n:1900000
FNBP4   1900000 perm   1601 sec   (1187 perm/sec)   p_kst 3.252632e-04   p_cons 9.464784e-01   p_joint 3.252632e-04

Joint ci ratio: 1.574054e-01	ci left: 2.990563e-04	ci right 3.506460e-04	k: 619	n:1910000
Cons ci ratio: 6.744267e-04	ci left: 9.461689e-01	ci right 9.468078e-01	k: 1807794	n:1910000
KS ci ratio: 1.574054e-01	ci left: 2.990563e-04	ci right 3.506460e-04	k: 619	n:1910000
FNBP4   1910000 perm   1616 sec   (1182 perm/sec)   p_kst 3.240838e-04   p_cons 9.464890e-01   p_joint 3.240838e-04

Joint ci ratio: 1.567744e-01	ci left: 3.000006e-04	ci right 3.515262e-04	k: 624	n:1920000
Cons ci ratio: 6.725536e-04	ci left: 9.461870e-01	ci right 9.468241e-01	k: 1817292	n:1920000
KS ci ratio: 1.567744e-01	ci left: 3.000006e-04	ci right 3.515262e-04	k: 624	n:1920000
FNBP4   1920000 perm   1632 sec   (1177 perm/sec)   p_kst 3.250000e-04   p_cons 9.465062e-01   p_joint 3.250000e-04

Joint ci ratio: 1.563995e-01	ci left: 2.999397e-04	ci right 3.513201e-04	k: 627	n:1930000
Cons ci ratio: 6.707714e-04	ci left: 9.461935e-01	ci right 9.468289e-01	k: 1826768	n:1930000
KS ci ratio: 1.563995e-01	ci left: 2.999397e-04	ci right 3.513201e-04	k: 627	n:1930000
FNBP4   1930000 perm   1647 sec   (1172 perm/sec)   p_kst 3.248705e-04   p_cons 9.465119e-01   p_joint 3.248705e-04

Joint ci ratio: 1.560273e-01	ci left: 2.998795e-04	ci right 3.511160e-04	k: 630	n:1940000
Cons ci ratio: 6.690510e-04	ci left: 9.461928e-01	ci right 9.468265e-01	k: 1836230	n:1940000
KS ci ratio: 1.560273e-01	ci left: 2.998795e-04	ci right 3.511160e-04	k: 630	n:1940000
FNBP4   1940000 perm   1663 sec   (1167 perm/sec)   p_kst 3.247423e-04   p_cons 9.465103e-01   p_joint 3.247423e-04

Joint ci ratio: 1.554127e-01	ci left: 3.008059e-04	ci right 3.519793e-04	k: 635	n:1950000
Cons ci ratio: 6.672694e-04	ci left: 9.462033e-01	ci right 9.468354e-01	k: 1845714	n:1950000
KS ci ratio: 1.554127e-01	ci left: 3.008059e-04	ci right 3.519793e-04	k: 635	n:1950000
FNBP4   1950000 perm   1678 sec   (1162 perm/sec)   p_kst 3.256410e-04   p_cons 9.465200e-01   p_joint 3.256410e-04

Joint ci ratio: 1.550475e-01	ci left: 3.007423e-04	ci right 3.517735e-04	k: 638	n:1960000
Cons ci ratio: 6.656059e-04	ci left: 9.461979e-01	ci right 9.468284e-01	k: 1855167	n:1960000
KS ci ratio: 1.550475e-01	ci left: 3.007423e-04	ci right 3.517735e-04	k: 638	n:1960000
FNBP4   1960000 perm   1693 sec   (1157 perm/sec)   p_kst 3.255102e-04   p_cons 9.465138e-01   p_joint 3.255102e-04

Joint ci ratio: 1.550476e-01	ci left: 2.992157e-04	ci right 3.499879e-04	k: 638	n:1970000
Cons ci ratio: 6.640180e-04	ci left: 9.461828e-01	ci right 9.468118e-01	k: 1864601	n:1970000
KS ci ratio: 1.550476e-01	ci left: 2.992157e-04	ci right 3.499879e-04	k: 638	n:1970000
FNBP4   1970000 perm   1709 sec   (1153 perm/sec)   p_kst 3.238579e-04   p_cons 9.464980e-01   p_joint 3.238579e-04

Joint ci ratio: 1.544445e-01	ci left: 3.001320e-04	ci right 3.508432e-04	k: 643	n:1980000
Cons ci ratio: 6.624150e-04	ci left: 9.461720e-01	ci right 9.467994e-01	k: 1874043	n:1980000
KS ci ratio: 1.544445e-01	ci left: 3.001320e-04	ci right 3.508432e-04	k: 643	n:1980000
FNBP4   1980000 perm   1725 sec   (1148 perm/sec)   p_kst 3.247475e-04   p_cons 9.464864e-01   p_joint 3.247475e-04

Joint ci ratio: 1.539670e-01	ci left: 3.005563e-04	ci right 3.511677e-04	k: 647	n:1990000
Cons ci ratio: 6.608103e-04	ci left: 9.461633e-01	ci right 9.467892e-01	k: 1883489	n:1990000
KS ci ratio: 1.539670e-01	ci left: 3.005563e-04	ci right 3.511677e-04	k: 647	n:1990000
FNBP4   1990000 perm   1740 sec   (1144 perm/sec)   p_kst 3.251256e-04   p_cons 9.464769e-01   p_joint 3.251256e-04

Joint ci ratio: 1.539672e-01	ci left: 2.990535e-04	ci right 3.494119e-04	k: 647	n:2000000
Cons ci ratio: 6.592368e-04	ci left: 9.461516e-01	ci right 9.467761e-01	k: 1892929	n:2000000
KS ci ratio: 1.539672e-01	ci left: 2.990535e-04	ci right 3.494119e-04	k: 647	n:2000000
FNBP4   2000000 perm   1756 sec   (1139 perm/sec)   p_kst 3.235000e-04   p_cons 9.464645e-01   p_joint 3.235000e-04

Joint ci ratio: 1.536120e-01	ci left: 2.990007e-04	ci right 3.492235e-04	k: 650	n:2010000
Cons ci ratio: 6.576518e-04	ci left: 9.461436e-01	ci right 9.467665e-01	k: 1902376	n:2010000
KS ci ratio: 1.536120e-01	ci left: 2.990007e-04	ci right 3.492235e-04	k: 650	n:2010000
FNBP4   2010000 perm   1772 sec   (1134 perm/sec)   p_kst 3.233831e-04   p_cons 9.464557e-01   p_joint 3.233831e-04

Joint ci ratio: 1.531422e-01	ci left: 2.994247e-04	ci right 3.495508e-04	k: 654	n:2020000
Cons ci ratio: 6.559660e-04	ci left: 9.461531e-01	ci right 9.467744e-01	k: 1911858	n:2020000
KS ci ratio: 1.531422e-01	ci left: 2.994247e-04	ci right 3.495508e-04	k: 654	n:2020000
FNBP4   2020000 perm   1788 sec   (1130 perm/sec)   p_kst 3.237624e-04   p_cons 9.464644e-01   p_joint 3.237624e-04

Joint ci ratio: 1.531423e-01	ci left: 2.979497e-04	ci right 3.478288e-04	k: 654	n:2030000
Cons ci ratio: 6.544426e-04	ci left: 9.461392e-01	ci right 9.467591e-01	k: 1921293	n:2030000
KS ci ratio: 1.531423e-01	ci left: 2.979497e-04	ci right 3.478288e-04	k: 654	n:2030000
FNBP4   2030000 perm   1805 sec   (1125 perm/sec)   p_kst 3.221675e-04   p_cons 9.464498e-01   p_joint 3.221675e-04

Joint ci ratio: 1.527928e-01	ci left: 2.979035e-04	ci right 3.476506e-04	k: 657	n:2040000
Cons ci ratio: 6.526771e-04	ci left: 9.461648e-01	ci right 9.467830e-01	k: 1930808	n:2040000
KS ci ratio: 1.527928e-01	ci left: 2.979035e-04	ci right 3.476506e-04	k: 657	n:2040000
FNBP4   2040000 perm   1820 sec   (1121 perm/sec)   p_kst 3.220588e-04   p_cons 9.464745e-01   p_joint 3.220588e-04

Joint ci ratio: 1.524457e-01	ci left: 2.978578e-04	ci right 3.474740e-04	k: 660	n:2050000
Cons ci ratio: 6.511953e-04	ci left: 9.461480e-01	ci right 9.467648e-01	k: 1940237	n:2050000
KS ci ratio: 1.524457e-01	ci left: 2.978578e-04	ci right 3.474740e-04	k: 660	n:2050000
FNBP4   2050000 perm   1837 sec   (1116 perm/sec)   p_kst 3.219512e-04   p_cons 9.464571e-01   p_joint 3.219512e-04

Joint ci ratio: 1.521009e-01	ci left: 2.978127e-04	ci right 3.472990e-04	k: 663	n:2060000
Cons ci ratio: 6.495742e-04	ci left: 9.461548e-01	ci right 9.467701e-01	k: 1949714	n:2060000
KS ci ratio: 1.521009e-01	ci left: 2.978127e-04	ci right 3.472990e-04	k: 663	n:2060000
FNBP4   2060000 perm   1853 sec   (1112 perm/sec)   p_kst 3.218447e-04   p_cons 9.464631e-01   p_joint 3.218447e-04

Joint ci ratio: 1.519866e-01	ci left: 2.968387e-04	ci right 3.461227e-04	k: 664	n:2070000
Cons ci ratio: 6.480608e-04	ci left: 9.461466e-01	ci right 9.467604e-01	k: 1959160	n:2070000
KS ci ratio: 1.519866e-01	ci left: 2.968387e-04	ci right 3.461227e-04	k: 664	n:2070000
FNBP4   2070000 perm   1869 sec   (1108 perm/sec)   p_kst 3.207729e-04   p_cons 9.464541e-01   p_joint 3.207729e-04

Joint ci ratio: 1.518726e-01	ci left: 2.958741e-04	ci right 3.449577e-04	k: 665	n:2080000
Cons ci ratio: 6.464782e-04	ci left: 9.461509e-01	ci right 9.467632e-01	k: 1968632	n:2080000
KS ci ratio: 1.518726e-01	ci left: 2.958741e-04	ci right 3.449577e-04	k: 665	n:2080000
FNBP4   2080000 perm   1885 sec   (1103 perm/sec)   p_kst 3.197115e-04   p_cons 9.464577e-01   p_joint 3.197115e-04

Joint ci ratio: 1.516451e-01	ci left: 2.953790e-04	ci right 3.443005e-04	k: 667	n:2090000
Cons ci ratio: 6.449497e-04	ci left: 9.461485e-01	ci right 9.467594e-01	k: 1978090	n:2090000
KS ci ratio: 1.516451e-01	ci left: 2.953790e-04	ci right 3.443005e-04	k: 667	n:2090000
FNBP4   2090000 perm   1902 sec   (1099 perm/sec)   p_kst 3.191388e-04   p_cons 9.464545e-01   p_joint 3.191388e-04

Joint ci ratio: 1.510806e-01	ci left: 2.962633e-04	ci right 3.451320e-04	k: 672	n:2100000
Cons ci ratio: 6.433202e-04	ci left: 9.461638e-01	ci right 9.467731e-01	k: 1987585	n:2100000
KS ci ratio: 1.510806e-01	ci left: 2.962633e-04	ci right 3.451320e-04	k: 672	n:2100000
FNBP4   2100000 perm   1918 sec   (1095 perm/sec)   p_kst 3.200000e-04   p_cons 9.464690e-01   p_joint 3.200000e-04

Joint ci ratio: 1.507450e-01	ci left: 2.962273e-04	ci right 3.449717e-04	k: 675	n:2110000
Cons ci ratio: 6.418290e-04	ci left: 9.461589e-01	ci right 9.467669e-01	k: 1997038	n:2110000
KS ci ratio: 1.507450e-01	ci left: 2.962273e-04	ci right 3.449717e-04	k: 675	n:2110000
FNBP4   2110000 perm   1935 sec   (1090 perm/sec)   p_kst 3.199052e-04   p_cons 9.464635e-01   p_joint 3.199052e-04

Joint ci ratio: 1.500804e-01	ci left: 2.975537e-04	ci right 3.462811e-04	k: 681	n:2120000
Cons ci ratio: 6.404018e-04	ci left: 9.461456e-01	ci right 9.467522e-01	k: 2006473	n:2120000
KS ci ratio: 1.500804e-01	ci left: 2.975537e-04	ci right 3.462811e-04	k: 681	n:2120000
FNBP4   2120000 perm   1952 sec   (1086 perm/sec)   p_kst 3.212264e-04   p_cons 9.464495e-01   p_joint 3.212264e-04

Joint ci ratio: 1.490996e-01	ci left: 3.002239e-04	ci right 3.490387e-04	k: 690	n:2130000
Cons ci ratio: 6.389603e-04	ci left: 9.461362e-01	ci right 9.467414e-01	k: 2015916	n:2130000
KS ci ratio: 1.490996e-01	ci left: 3.002239e-04	ci right 3.490387e-04	k: 690	n:2130000
FNBP4   2130000 perm   1969 sec   (1082 perm/sec)   p_kst 3.239437e-04   p_cons 9.464394e-01   p_joint 3.239437e-04

Joint ci ratio: 1.486699e-01	ci left: 3.006206e-04	ci right 3.493465e-04	k: 694	n:2140000
Cons ci ratio: 6.373581e-04	ci left: 9.461541e-01	ci right 9.467578e-01	k: 2025417	n:2140000
KS ci ratio: 1.486699e-01	ci left: 3.006206e-04	ci right 3.493465e-04	k: 694	n:2140000
FNBP4   2140000 perm   1986 sec   (1077 perm/sec)   p_kst 3.242991e-04   p_cons 9.464565e-01   p_joint 3.242991e-04

Joint ci ratio: 1.484565e-01	ci left: 3.001180e-04	ci right 3.486864e-04	k: 696	n:2150000
Cons ci ratio: 6.359809e-04	ci left: 9.461377e-01	ci right 9.467401e-01	k: 2034845	n:2150000
KS ci ratio: 1.484565e-01	ci left: 3.001180e-04	ci right 3.486864e-04	k: 696	n:2150000
FNBP4   2150000 perm   2003 sec   (1073 perm/sec)   p_kst 3.237209e-04   p_cons 9.464395e-01   p_joint 3.237209e-04

Joint ci ratio: 1.482440e-01	ci left: 2.996201e-04	ci right 3.480324e-04	k: 698	n:2160000
Cons ci ratio: 6.345197e-04	ci left: 9.461364e-01	ci right 9.467374e-01	k: 2044305	n:2160000
KS ci ratio: 1.482440e-01	ci left: 2.996201e-04	ci right 3.480324e-04	k: 698	n:2160000
FNBP4   2160000 perm   2020 sec   (1069 perm/sec)   p_kst 3.231481e-04   p_cons 9.464375e-01   p_joint 3.231481e-04

Joint ci ratio: 1.479269e-01	ci left: 2.995706e-04	ci right 3.478622e-04	k: 701	n:2170000
Cons ci ratio: 6.330887e-04	ci left: 9.461319e-01	ci right 9.467315e-01	k: 2053758	n:2170000
KS ci ratio: 1.479269e-01	ci left: 2.995706e-04	ci right 3.478622e-04	k: 701	n:2170000
FNBP4   2170000 perm   2037 sec   (1065 perm/sec)   p_kst 3.230415e-04   p_cons 9.464323e-01   p_joint 3.230415e-04

Joint ci ratio: 1.475072e-01	ci left: 2.999635e-04	ci right 3.481691e-04	k: 705	n:2180000
Cons ci ratio: 6.316959e-04	ci left: 9.461227e-01	ci right 9.467210e-01	k: 2063201	n:2180000
KS ci ratio: 1.475072e-01	ci left: 2.999635e-04	ci right 3.481691e-04	k: 705	n:2180000
FNBP4   2180000 perm   2054 sec   (1061 perm/sec)   p_kst 3.233945e-04   p_cons 9.464225e-01   p_joint 3.233945e-04

Joint ci ratio: 1.471948e-01	ci left: 2.999131e-04	ci right 3.479997e-04	k: 708	n:2190000
Cons ci ratio: 6.302981e-04	ci left: 9.461160e-01	ci right 9.467130e-01	k: 2072649	n:2190000
KS ci ratio: 1.471948e-01	ci left: 2.999131e-04	ci right 3.479997e-04	k: 708	n:2190000
FNBP4   2190000 perm   2071 sec   (1057 perm/sec)   p_kst 3.232877e-04   p_cons 9.464151e-01   p_joint 3.232877e-04

Joint ci ratio: 1.467813e-01	ci left: 3.003012e-04	ci right 3.483028e-04	k: 712	n:2200000
Cons ci ratio: 6.289940e-04	ci left: 9.460956e-01	ci right 9.466914e-01	k: 2082067	n:2200000
KS ci ratio: 1.467813e-01	ci left: 3.003012e-04	ci right 3.483028e-04	k: 712	n:2200000
FNBP4   2200000 perm   2088 sec   (1053 perm/sec)   p_kst 3.236364e-04   p_cons 9.463941e-01   p_joint 3.236364e-04

Joint ci ratio: 1.465759e-01	ci left: 2.998142e-04	ci right 3.476650e-04	k: 714	n:2210000
Cons ci ratio: 6.275271e-04	ci left: 9.461032e-01	ci right 9.466975e-01	k: 2091546	n:2210000
KS ci ratio: 1.465759e-01	ci left: 2.998142e-04	ci right 3.476650e-04	k: 714	n:2210000
FNBP4   2210000 perm   2106 sec   (1049 perm/sec)   p_kst 3.230769e-04   p_cons 9.464009e-01   p_joint 3.230769e-04

Joint ci ratio: 1.462694e-01	ci left: 2.997655e-04	ci right 3.474997e-04	k: 717	n:2220000
Cons ci ratio: 6.260816e-04	ci left: 9.461088e-01	ci right 9.467018e-01	k: 2101021	n:2220000
KS ci ratio: 1.462694e-01	ci left: 2.997655e-04	ci right 3.474997e-04	k: 717	n:2220000
FNBP4   2220000 perm   2123 sec   (1046 perm/sec)   p_kst 3.229730e-04   p_cons 9.464059e-01   p_joint 3.229730e-04

Joint ci ratio: 1.460662e-01	ci left: 2.992853e-04	ci right 3.468711e-04	k: 719	n:2230000
Cons ci ratio: 6.247068e-04	ci left: 9.461045e-01	ci right 9.466961e-01	k: 2110474	n:2230000
KS ci ratio: 1.460662e-01	ci left: 2.992853e-04	ci right 3.468711e-04	k: 719	n:2230000
FNBP4   2230000 perm   2141 sec   (1042 perm/sec)   p_kst 3.224215e-04   p_cons 9.464009e-01   p_joint 3.224215e-04

Joint ci ratio: 1.455616e-01	ci left: 3.000999e-04	ci right 3.476361e-04	k: 724	n:2240000
Cons ci ratio: 6.231956e-04	ci left: 9.461239e-01	ci right 9.467142e-01	k: 2119980	n:2240000
KS ci ratio: 1.455616e-01	ci left: 3.000999e-04	ci right 3.476361e-04	k: 724	n:2240000
FNBP4   2240000 perm   2158 sec   (1038 perm/sec)   p_kst 3.232143e-04   p_cons 9.464196e-01   p_joint 3.232143e-04

Joint ci ratio: 1.453612e-01	ci left: 2.996227e-04	ci right 3.470123e-04	k: 726	n:2250000
Cons ci ratio: 6.217825e-04	ci left: 9.461290e-01	ci right 9.467179e-01	k: 2129454	n:2250000
KS ci ratio: 1.453612e-01	ci left: 2.996227e-04	ci right 3.470123e-04	k: 726	n:2250000
FNBP4   2250000 perm   2176 sec   (1034 perm/sec)   p_kst 3.226667e-04   p_cons 9.464240e-01   p_joint 3.226667e-04

Joint ci ratio: 1.449630e-01	ci left: 3.000025e-04	ci right 3.473109e-04	k: 730	n:2260000
Cons ci ratio: 6.203816e-04	ci left: 9.461335e-01	ci right 9.467211e-01	k: 2138927	n:2260000
KS ci ratio: 1.449630e-01	ci left: 3.000025e-04	ci right 3.473109e-04	k: 730	n:2260000
FNBP4   2260000 perm   2193 sec   (1030 perm/sec)   p_kst 3.230088e-04   p_cons 9.464279e-01   p_joint 3.230088e-04

Joint ci ratio: 1.446664e-01	ci left: 2.999547e-04	ci right 3.471504e-04	k: 733	n:2270000
Cons ci ratio: 6.190359e-04	ci left: 9.461305e-01	ci right 9.467168e-01	k: 2148383	n:2270000
KS ci ratio: 1.446664e-01	ci left: 2.999547e-04	ci right 3.471504e-04	k: 733	n:2270000
FNBP4   2270000 perm   2212 sec   (1026 perm/sec)   p_kst 3.229075e-04   p_cons 9.464242e-01   p_joint 3.229075e-04

Joint ci ratio: 1.443717e-01	ci left: 2.999073e-04	ci right 3.469911e-04	k: 736	n:2280000
Cons ci ratio: 6.177096e-04	ci left: 9.461258e-01	ci right 9.467108e-01	k: 2157835	n:2280000
KS ci ratio: 1.443717e-01	ci left: 2.999073e-04	ci right 3.469911e-04	k: 736	n:2280000
FNBP4   2280000 perm   2230 sec   (1023 perm/sec)   p_kst 3.228070e-04   p_cons 9.464189e-01   p_joint 3.228070e-04

Joint ci ratio: 1.442739e-01	ci left: 2.990185e-04	ci right 3.459283e-04	k: 737	n:2290000
Cons ci ratio: 6.162696e-04	ci left: 9.461412e-01	ci right 9.467249e-01	k: 2167333	n:2290000
KS ci ratio: 1.442739e-01	ci left: 2.990185e-04	ci right 3.459283e-04	k: 737	n:2290000
FNBP4   2290000 perm   2248 sec   (1019 perm/sec)   p_kst 3.218341e-04   p_cons 9.464336e-01   p_joint 3.218341e-04

Joint ci ratio: 1.440789e-01	ci left: 2.985567e-04	ci right 3.453252e-04	k: 739	n:2300000
Cons ci ratio: 6.149109e-04	ci left: 9.461448e-01	ci right 9.467272e-01	k: 2176804	n:2300000
KS ci ratio: 1.440789e-01	ci left: 2.985567e-04	ci right 3.453252e-04	k: 739	n:2300000
FNBP4   2300000 perm   2265 sec   (1015 perm/sec)   p_kst 3.213043e-04   p_cons 9.464365e-01   p_joint 3.213043e-04

Joint ci ratio: 1.437877e-01	ci left: 2.985161e-04	ci right 3.451757e-04	k: 742	n:2310000
Cons ci ratio: 6.135611e-04	ci left: 9.461483e-01	ci right 9.467294e-01	k: 2186275	n:2310000
KS ci ratio: 1.437877e-01	ci left: 2.985161e-04	ci right 3.451757e-04	k: 742	n:2310000
FNBP4   2310000 perm   2283 sec   (1012 perm/sec)   p_kst 3.212121e-04   p_cons 9.464394e-01   p_joint 3.212121e-04

Joint ci ratio: 1.431150e-01	ci left: 3.001384e-04	ci right 3.468133e-04	k: 749	n:2320000
Cons ci ratio: 6.121993e-04	ci left: 9.461552e-01	ci right 9.467350e-01	k: 2195754	n:2320000
KS ci ratio: 1.431150e-01	ci left: 3.001384e-04	ci right 3.468133e-04	k: 749	n:2320000
FNBP4   2320000 perm   2302 sec   (1008 perm/sec)   p_kst 3.228448e-04   p_cons 9.464457e-01   p_joint 3.228448e-04

Joint ci ratio: 1.426403e-01	ci left: 3.009195e-04	ci right 3.475474e-04	k: 754	n:2330000
Cons ci ratio: 6.109629e-04	ci left: 9.461427e-01	ci right 9.467214e-01	k: 2205188	n:2330000
KS ci ratio: 1.426403e-01	ci left: 3.009195e-04	ci right 3.475474e-04	k: 754	n:2330000
FNBP4   2330000 perm   2320 sec   (1005 perm/sec)   p_kst 3.236052e-04   p_cons 9.464326e-01   p_joint 3.236052e-04

Joint ci ratio: 1.421702e-01	ci left: 3.016941e-04	ci right 3.482750e-04	k: 759	n:2340000
Cons ci ratio: 6.095412e-04	ci left: 9.461625e-01	ci right 9.467398e-01	k: 2214697	n:2340000
KS ci ratio: 1.421702e-01	ci left: 3.016941e-04	ci right 3.482750e-04	k: 759	n:2340000
FNBP4   2340000 perm   2338 sec   (1001 perm/sec)   p_kst 3.243590e-04   p_cons 9.464517e-01   p_joint 3.243590e-04

Joint ci ratio: 1.420768e-01	ci left: 3.008207e-04	ci right 3.472337e-04	k: 760	n:2350000
Cons ci ratio: 6.082519e-04	ci left: 9.461616e-01	ci right 9.467377e-01	k: 2224158	n:2350000
KS ci ratio: 1.420768e-01	ci left: 3.008207e-04	ci right 3.472337e-04	k: 760	n:2350000
FNBP4   2350000 perm   2356 sec   (997 perm/sec)   p_kst 3.234043e-04   p_cons 9.464502e-01   p_joint 3.234043e-04

Joint ci ratio: 1.417976e-01	ci left: 3.007721e-04	ci right 3.470786e-04	k: 763	n:2360000
Cons ci ratio: 6.069581e-04	ci left: 9.461629e-01	ci right 9.467377e-01	k: 2233624	n:2360000
KS ci ratio: 1.417976e-01	ci left: 3.007721e-04	ci right 3.470786e-04	k: 763	n:2360000
FNBP4   2360000 perm   2375 sec   (994 perm/sec)   p_kst 3.233051e-04   p_cons 9.464508e-01   p_joint 3.233051e-04

Joint ci ratio: 1.416124e-01	ci left: 3.003170e-04	ci right 3.464880e-04	k: 765	n:2370000
Cons ci ratio: 6.055917e-04	ci left: 9.461776e-01	ci right 9.467512e-01	k: 2243122	n:2370000
KS ci ratio: 1.416124e-01	ci left: 3.003170e-04	ci right 3.464880e-04	k: 765	n:2370000
FNBP4   2370000 perm   2394 sec   (990 perm/sec)   p_kst 3.227848e-04   p_cons 9.464650e-01   p_joint 3.227848e-04

Joint ci ratio: 1.410610e-01	ci left: 3.014870e-04	ci right 3.476422e-04	k: 771	n:2380000
Cons ci ratio: 6.043047e-04	ci left: 9.461805e-01	ci right 9.467529e-01	k: 2252592	n:2380000
KS ci ratio: 1.410610e-01	ci left: 3.014870e-04	ci right 3.476422e-04	k: 771	n:2380000
FNBP4   2380000 perm   2412 sec   (987 perm/sec)   p_kst 3.239496e-04   p_cons 9.464672e-01   p_joint 3.239496e-04

Joint ci ratio: 1.407877e-01	ci left: 3.014365e-04	ci right 3.474871e-04	k: 774	n:2390000
Cons ci ratio: 6.030060e-04	ci left: 9.461867e-01	ci right 9.467578e-01	k: 2262070	n:2390000
KS ci ratio: 1.407877e-01	ci left: 3.014365e-04	ci right 3.474871e-04	k: 774	n:2390000
FNBP4   2390000 perm   2431 sec   (983 perm/sec)   p_kst 3.238494e-04   p_cons 9.464728e-01   p_joint 3.238494e-04

Joint ci ratio: 1.405160e-01	ci left: 3.013866e-04	ci right 3.473332e-04	k: 777	n:2400000
Cons ci ratio: 6.018566e-04	ci left: 9.461690e-01	ci right 9.467391e-01	k: 2271491	n:2400000
KS ci ratio: 1.405160e-01	ci left: 3.013866e-04	ci right 3.473332e-04	k: 777	n:2400000
FNBP4   2400000 perm   2449 sec   (980 perm/sec)   p_kst 3.237500e-04   p_cons 9.464546e-01   p_joint 3.237500e-04

Joint ci ratio: 1.403358e-01	ci left: 3.009367e-04	ci right 3.467510e-04	k: 779	n:2410000
Cons ci ratio: 6.005637e-04	ci left: 9.461769e-01	ci right 9.467457e-01	k: 2280973	n:2410000
KS ci ratio: 1.403358e-01	ci left: 3.009367e-04	ci right 3.467510e-04	k: 779	n:2410000
FNBP4   2410000 perm   2468 sec   (976 perm/sec)   p_kst 3.232365e-04   p_cons 9.464618e-01   p_joint 3.232365e-04

Joint ci ratio: 1.401562e-01	ci left: 3.004906e-04	ci right 3.461736e-04	k: 781	n:2420000
Cons ci ratio: 5.993451e-04	ci left: 9.461735e-01	ci right 9.467411e-01	k: 2290428	n:2420000
KS ci ratio: 1.401562e-01	ci left: 3.004906e-04	ci right 3.461736e-04	k: 781	n:2420000
FNBP4   2420000 perm   2487 sec   (973 perm/sec)   p_kst 3.227273e-04   p_cons 9.464579e-01   p_joint 3.227273e-04

Joint ci ratio: 1.396215e-01	ci left: 3.016368e-04	ci right 3.473045e-04	k: 787	n:2430000
Cons ci ratio: 5.980391e-04	ci left: 9.461862e-01	ci right 9.467526e-01	k: 2299922	n:2430000
KS ci ratio: 1.396215e-01	ci left: 3.016368e-04	ci right 3.473045e-04	k: 787	n:2430000
FNBP4   2430000 perm   2506 sec   (970 perm/sec)   p_kst 3.238683e-04   p_cons 9.464700e-01   p_joint 3.238683e-04

Joint ci ratio: 1.394447e-01	ci left: 3.011916e-04	ci right 3.467294e-04	k: 789	n:2440000
Cons ci ratio: 5.967634e-04	ci left: 9.461951e-01	ci right 9.467604e-01	k: 2309407	n:2440000
KS ci ratio: 1.394447e-01	ci left: 3.011916e-04	ci right 3.467294e-04	k: 789	n:2440000
FNBP4   2440000 perm   2525 sec   (966 perm/sec)   p_kst 3.233607e-04   p_cons 9.464783e-01   p_joint 3.233607e-04

Joint ci ratio: 1.393566e-01	ci left: 3.003562e-04	ci right 3.457365e-04	k: 790	n:2450000
Cons ci ratio: 5.954333e-04	ci left: 9.462146e-01	ci right 9.467786e-01	k: 2318918	n:2450000
KS ci ratio: 1.393566e-01	ci left: 3.003562e-04	ci right 3.457365e-04	k: 790	n:2450000
FNBP4   2450000 perm   2544 sec   (963 perm/sec)   p_kst 3.224490e-04   p_cons 9.464971e-01   p_joint 3.224490e-04

Joint ci ratio: 1.392687e-01	ci left: 2.995275e-04	ci right 3.447518e-04	k: 791	n:2460000
Cons ci ratio: 5.942981e-04	ci left: 9.462022e-01	ci right 9.467651e-01	k: 2328351	n:2460000
KS ci ratio: 1.392687e-01	ci left: 2.995275e-04	ci right 3.447518e-04	k: 791	n:2460000
FNBP4   2460000 perm   2563 sec   (960 perm/sec)   p_kst 3.215447e-04   p_cons 9.464841e-01   p_joint 3.215447e-04

Joint ci ratio: 1.389183e-01	ci left: 2.998779e-04	ci right 3.450318e-04	k: 795	n:2470000
Cons ci ratio: 5.930319e-04	ci left: 9.462134e-01	ci right 9.467751e-01	k: 2337842	n:2470000
KS ci ratio: 1.389183e-01	ci left: 2.998779e-04	ci right 3.450318e-04	k: 795	n:2470000
FNBP4   2470000 perm   2583 sec   (956 perm/sec)   p_kst 3.218623e-04   p_cons 9.464947e-01   p_joint 3.218623e-04

Joint ci ratio: 1.386573e-01	ci left: 2.998364e-04	ci right 3.448922e-04	k: 798	n:2480000
Cons ci ratio: 5.918867e-04	ci left: 9.462051e-01	ci right 9.467657e-01	k: 2347285	n:2480000
KS ci ratio: 1.386573e-01	ci left: 2.998364e-04	ci right 3.448922e-04	k: 798	n:2480000
FNBP4   2480000 perm   2602 sec   (953 perm/sec)   p_kst 3.217742e-04   p_cons 9.464859e-01   p_joint 3.217742e-04

Joint ci ratio: 1.383977e-01	ci left: 2.997953e-04	ci right 3.447536e-04	k: 801	n:2490000
Cons ci ratio: 5.906779e-04	ci left: 9.462089e-01	ci right 9.467684e-01	k: 2356758	n:2490000
KS ci ratio: 1.383977e-01	ci left: 2.997953e-04	ci right 3.447536e-04	k: 801	n:2490000
FNBP4   2490000 perm   2621 sec   (950 perm/sec)   p_kst 3.216867e-04   p_cons 9.464892e-01   p_joint 3.216867e-04

Joint ci ratio: 1.382255e-01	ci left: 2.993685e-04	ci right 3.442023e-04	k: 803	n:2500000
Cons ci ratio: 5.894300e-04	ci left: 9.462207e-01	ci right 9.467790e-01	k: 2366251	n:2500000
KS ci ratio: 1.382255e-01	ci left: 2.993685e-04	ci right 3.442023e-04	k: 803	n:2500000
FNBP4   2500000 perm   2640 sec   (947 perm/sec)   p_kst 3.212000e-04   p_cons 9.465004e-01   p_joint 3.212000e-04

Joint ci ratio: 1.377125e-01	ci left: 3.004837e-04	ci right 3.453038e-04	k: 809	n:2510000
Cons ci ratio: 5.881829e-04	ci left: 9.462337e-01	ci right 9.467908e-01	k: 2375747	n:2510000
KS ci ratio: 1.377125e-01	ci left: 3.004837e-04	ci right 3.453038e-04	k: 809	n:2510000
FNBP4   2510000 perm   2660 sec   (944 perm/sec)   p_kst 3.223108e-04   p_cons 9.465127e-01   p_joint 3.223108e-04

Joint ci ratio: 1.373737e-01	ci left: 3.008240e-04	ci right 3.455755e-04	k: 813	n:2520000
Cons ci ratio: 5.870587e-04	ci left: 9.462266e-01	ci right 9.467827e-01	k: 2385193	n:2520000
KS ci ratio: 1.373737e-01	ci left: 3.008240e-04	ci right 3.455755e-04	k: 813	n:2520000
FNBP4   2520000 perm   2680 sec   (940 perm/sec)   p_kst 3.226190e-04   p_cons 9.465052e-01   p_joint 3.226190e-04

Joint ci ratio: 1.369537e-01	ci left: 3.015434e-04	ci right 3.462536e-04	k: 818	n:2530000
Cons ci ratio: 5.858563e-04	ci left: 9.462343e-01	ci right 9.467892e-01	k: 2394676	n:2530000
KS ci ratio: 1.369537e-01	ci left: 3.015434e-04	ci right 3.462536e-04	k: 818	n:2530000
FNBP4   2530000 perm   2699 sec   (937 perm/sec)   p_kst 3.233202e-04   p_cons 9.465123e-01   p_joint 3.233202e-04

Joint ci ratio: 1.363720e-01	ci left: 3.030180e-04	ci right 3.477405e-04	k: 825	n:2540000
Cons ci ratio: 5.847067e-04	ci left: 9.462340e-01	ci right 9.467878e-01	k: 2404139	n:2540000
KS ci ratio: 1.363720e-01	ci left: 3.030180e-04	ci right 3.477405e-04	k: 825	n:2540000
FNBP4   2540000 perm   2719 sec   (934 perm/sec)   p_kst 3.248031e-04   p_cons 9.465114e-01   p_joint 3.248031e-04

Joint ci ratio: 1.363721e-01	ci left: 3.018296e-04	ci right 3.463768e-04	k: 825	n:2550000
Cons ci ratio: 5.835910e-04	ci left: 9.462290e-01	ci right 9.467818e-01	k: 2413590	n:2550000
KS ci ratio: 1.363721e-01	ci left: 3.018296e-04	ci right 3.463768e-04	k: 825	n:2550000
FNBP4   2550000 perm   2739 sec   (931 perm/sec)   p_kst 3.235294e-04   p_cons 9.465059e-01   p_joint 3.235294e-04

Joint ci ratio: 1.363722e-01	ci left: 3.006506e-04	ci right 3.450238e-04	k: 825	n:2560000
Cons ci ratio: 5.825018e-04	ci left: 9.462205e-01	ci right 9.467722e-01	k: 2423032	n:2560000
KS ci ratio: 1.363722e-01	ci left: 3.006506e-04	ci right 3.450238e-04	k: 825	n:2560000
FNBP4   2560000 perm   2759 sec   (928 perm/sec)   p_kst 3.222656e-04   p_cons 9.464969e-01   p_joint 3.222656e-04

Joint ci ratio: 1.359613e-01	ci left: 3.013600e-04	ci right 3.456930e-04	k: 830	n:2570000
Cons ci ratio: 5.813227e-04	ci left: 9.462289e-01	ci right 9.467795e-01	k: 2432517	n:2570000
KS ci ratio: 1.359613e-01	ci left: 3.013600e-04	ci right 3.456930e-04	k: 830	n:2570000
FNBP4   2570000 perm   2779 sec   (925 perm/sec)   p_kst 3.229572e-04   p_cons 9.465047e-01   p_joint 3.229572e-04

Joint ci ratio: 1.357165e-01	ci left: 3.013152e-04	ci right 3.455554e-04	k: 833	n:2580000
Cons ci ratio: 5.801463e-04	ci left: 9.462379e-01	ci right 9.467874e-01	k: 2442004	n:2580000
KS ci ratio: 1.357165e-01	ci left: 3.013152e-04	ci right 3.455554e-04	k: 833	n:2580000
FNBP4   2580000 perm   2798 sec   (922 perm/sec)   p_kst 3.228682e-04   p_cons 9.465132e-01   p_joint 3.228682e-04

Joint ci ratio: 1.350701e-01	ci left: 3.031360e-04	ci right 3.474145e-04	k: 841	n:2590000
Cons ci ratio: 5.790984e-04	ci left: 9.462256e-01	ci right 9.467741e-01	k: 2451436	n:2590000
KS ci ratio: 1.350701e-01	ci left: 3.031360e-04	ci right 3.474145e-04	k: 841	n:2590000
FNBP4   2590000 perm   2818 sec   (919 perm/sec)   p_kst 3.247104e-04   p_cons 9.465004e-01   p_joint 3.247104e-04

Joint ci ratio: 1.345914e-01	ci left: 3.042000e-04	ci right 3.484638e-04	k: 847	n:2600000
Cons ci ratio: 5.780012e-04	ci left: 9.462231e-01	ci right 9.467705e-01	k: 2460893	n:2600000
KS ci ratio: 1.345914e-01	ci left: 3.042000e-04	ci right 3.484638e-04	k: 847	n:2600000
FNBP4   2600000 perm   2838 sec   (916 perm/sec)   p_kst 3.257692e-04   p_cons 9.464973e-01   p_joint 3.257692e-04

Joint ci ratio: 1.344330e-01	ci left: 3.037750e-04	ci right 3.479208e-04	k: 849	n:2610000
Cons ci ratio: 5.769103e-04	ci left: 9.462206e-01	ci right 9.467670e-01	k: 2470350	n:2610000
KS ci ratio: 1.344330e-01	ci left: 3.037750e-04	ci right 3.479208e-04	k: 849	n:2610000
FNBP4   2610000 perm   2858 sec   (913 perm/sec)   p_kst 3.252874e-04   p_cons 9.464943e-01   p_joint 3.252874e-04

Joint ci ratio: 1.344331e-01	ci left: 3.026155e-04	ci right 3.465928e-04	k: 849	n:2620000
Cons ci ratio: 5.758732e-04	ci left: 9.462096e-01	ci right 9.467550e-01	k: 2479785	n:2620000
KS ci ratio: 1.344331e-01	ci left: 3.026155e-04	ci right 3.465928e-04	k: 849	n:2620000
FNBP4   2620000 perm   2879 sec   (910 perm/sec)   p_kst 3.240458e-04   p_cons 9.464828e-01   p_joint 3.240458e-04

Joint ci ratio: 1.342752e-01	ci left: 3.021998e-04	ci right 3.460610e-04	k: 851	n:2630000
Cons ci ratio: 5.748460e-04	ci left: 9.461980e-01	ci right 9.467425e-01	k: 2489218	n:2630000
KS ci ratio: 1.342752e-01	ci left: 3.021998e-04	ci right 3.460610e-04	k: 851	n:2630000
FNBP4   2630000 perm   2899 sec   (907 perm/sec)   p_kst 3.235741e-04   p_cons 9.464707e-01   p_joint 3.235741e-04

Joint ci ratio: 1.341965e-01	ci left: 3.014211e-04	ci right 3.451417e-04	k: 852	n:2640000
Cons ci ratio: 5.737792e-04	ci left: 9.461945e-01	ci right 9.467379e-01	k: 2498672	n:2640000
KS ci ratio: 1.341965e-01	ci left: 3.014211e-04	ci right 3.451417e-04	k: 852	n:2640000
FNBP4   2640000 perm   2920 sec   (904 perm/sec)   p_kst 3.227273e-04   p_cons 9.464667e-01   p_joint 3.227273e-04

Joint ci ratio: 1.338049e-01	ci left: 3.021073e-04	ci right 3.457892e-04	k: 857	n:2650000
Cons ci ratio: 5.727140e-04	ci left: 9.461917e-01	ci right 9.467341e-01	k: 2508128	n:2650000
KS ci ratio: 1.338049e-01	ci left: 3.021073e-04	ci right 3.457892e-04	k: 857	n:2650000
FNBP4   2650000 perm   2940 sec   (901 perm/sec)   p_kst 3.233962e-04   p_cons 9.464634e-01   p_joint 3.233962e-04

Joint ci ratio: 1.335716e-01	ci left: 3.020616e-04	ci right 3.456548e-04	k: 860	n:2660000
Cons ci ratio: 5.716103e-04	ci left: 9.461969e-01	ci right 9.467382e-01	k: 2517605	n:2660000
KS ci ratio: 1.335716e-01	ci left: 3.020616e-04	ci right 3.456548e-04	k: 860	n:2660000
FNBP4   2660000 perm   2961 sec   (898 perm/sec)   p_kst 3.233083e-04   p_cons 9.464680e-01   p_joint 3.233083e-04

Joint ci ratio: 1.331085e-01	ci left: 3.031025e-04	ci right 3.466823e-04	k: 866	n:2670000
Cons ci ratio: 5.705023e-04	ci left: 9.462039e-01	ci right 9.467442e-01	k: 2527087	n:2670000
KS ci ratio: 1.331085e-01	ci left: 3.031025e-04	ci right 3.466823e-04	k: 866	n:2670000
FNBP4   2670000 perm   2982 sec   (895 perm/sec)   p_kst 3.243446e-04   p_cons 9.464745e-01   p_joint 3.243446e-04

Joint ci ratio: 1.328788e-01	ci left: 3.030537e-04	ci right 3.465453e-04	k: 869	n:2680000
Cons ci ratio: 5.694762e-04	ci left: 9.461974e-01	ci right 9.467367e-01	k: 2536533	n:2680000
KS ci ratio: 1.328788e-01	ci left: 3.030537e-04	ci right 3.465453e-04	k: 869	n:2680000
FNBP4   2680000 perm   3002 sec   (893 perm/sec)   p_kst 3.242537e-04   p_cons 9.464675e-01   p_joint 3.242537e-04

Joint ci ratio: 1.324986e-01	ci left: 3.037242e-04	ci right 3.471775e-04	k: 874	n:2690000
Cons ci ratio: 5.683493e-04	ci left: 9.462099e-01	ci right 9.467482e-01	k: 2546030	n:2690000
KS ci ratio: 1.324986e-01	ci left: 3.037242e-04	ci right 3.471775e-04	k: 874	n:2690000
FNBP4   2690000 perm   3023 sec   (890 perm/sec)   p_kst 3.249071e-04   p_cons 9.464796e-01   p_joint 3.249071e-04

Joint ci ratio: 1.319717e-01	ci left: 3.051061e-04	ci right 3.485699e-04	k: 881	n:2700000
Cons ci ratio: 5.672892e-04	ci left: 9.462116e-01	ci right 9.467489e-01	k: 2555498	n:2700000
KS ci ratio: 1.319717e-01	ci left: 3.051061e-04	ci right 3.485699e-04	k: 881	n:2700000
FNBP4   2700000 perm   3044 sec   (887 perm/sec)   p_kst 3.262963e-04   p_cons 9.464807e-01   p_joint 3.262963e-04

Joint ci ratio: 1.319718e-01	ci left: 3.039802e-04	ci right 3.472837e-04	k: 881	n:2710000
Cons ci ratio: 5.662288e-04	ci left: 9.462144e-01	ci right 9.467507e-01	k: 2564969	n:2710000
KS ci ratio: 1.319718e-01	ci left: 3.039802e-04	ci right 3.472837e-04	k: 881	n:2710000
FNBP4   2710000 perm   3065 sec   (884 perm/sec)   p_kst 3.250923e-04   p_cons 9.464830e-01   p_joint 3.250923e-04

Joint ci ratio: 1.318971e-01	ci left: 3.032182e-04	ci right 3.463867e-04	k: 882	n:2720000
Cons ci ratio: 5.652215e-04	ci left: 9.462087e-01	ci right 9.467440e-01	k: 2574417	n:2720000
KS ci ratio: 1.318971e-01	ci left: 3.032182e-04	ci right 3.463867e-04	k: 882	n:2720000
FNBP4   2720000 perm   3086 sec   (881 perm/sec)   p_kst 3.242647e-04   p_cons 9.464768e-01   p_joint 3.242647e-04

Joint ci ratio: 1.314511e-01	ci left: 3.042329e-04	ci right 3.473880e-04	k: 888	n:2730000
Cons ci ratio: 5.641726e-04	ci left: 9.462115e-01	ci right 9.467458e-01	k: 2583888	n:2730000
KS ci ratio: 1.314511e-01	ci left: 3.042329e-04	ci right 3.473880e-04	k: 888	n:2730000
FNBP4   2730000 perm   3107 sec   (879 perm/sec)   p_kst 3.252747e-04   p_cons 9.464791e-01   p_joint 3.252747e-04

Joint ci ratio: 1.314512e-01	ci left: 3.031226e-04	ci right 3.461202e-04	k: 888	n:2740000
Cons ci ratio: 5.631600e-04	ci left: 9.462088e-01	ci right 9.467421e-01	k: 2593344	n:2740000
KS ci ratio: 1.314512e-01	ci left: 3.031226e-04	ci right 3.461202e-04	k: 888	n:2740000
FNBP4   2740000 perm   3128 sec   (876 perm/sec)   p_kst 3.240876e-04   p_cons 9.464759e-01   p_joint 3.240876e-04

Joint ci ratio: 1.313036e-01	ci left: 3.027237e-04	ci right 3.456127e-04	k: 890	n:2750000
Cons ci ratio: 5.621508e-04	ci left: 9.462064e-01	ci right 9.467388e-01	k: 2602801	n:2750000
KS ci ratio: 1.313036e-01	ci left: 3.027237e-04	ci right 3.456127e-04	k: 890	n:2750000
FNBP4   2750000 perm   3149 sec   (873 perm/sec)   p_kst 3.236364e-04   p_cons 9.464731e-01   p_joint 3.236364e-04

Joint ci ratio: 1.310099e-01	ci left: 3.030286e-04	ci right 3.458573e-04	k: 894	n:2760000
Cons ci ratio: 5.611109e-04	ci left: 9.462106e-01	ci right 9.467421e-01	k: 2612276	n:2760000
KS ci ratio: 1.310099e-01	ci left: 3.030286e-04	ci right 3.458573e-04	k: 894	n:2760000
FNBP4   2760000 perm   3171 sec   (870 perm/sec)   p_kst 3.239130e-04   p_cons 9.464768e-01   p_joint 3.239130e-04

Joint ci ratio: 1.309368e-01	ci left: 3.022838e-04	ci right 3.449816e-04	k: 895	n:2770000
Cons ci ratio: 5.600887e-04	ci left: 9.462126e-01	ci right 9.467431e-01	k: 2621745	n:2770000
KS ci ratio: 1.309368e-01	ci left: 3.022838e-04	ci right 3.449816e-04	k: 895	n:2770000
FNBP4   2770000 perm   3192 sec   (868 perm/sec)   p_kst 3.231047e-04   p_cons 9.464783e-01   p_joint 3.231047e-04

Joint ci ratio: 1.307182e-01	ci left: 3.022402e-04	ci right 3.448551e-04	k: 898	n:2780000
Cons ci ratio: 5.590899e-04	ci left: 9.462114e-01	ci right 9.467409e-01	k: 2631205	n:2780000
KS ci ratio: 1.307182e-01	ci left: 3.022402e-04	ci right 3.448551e-04	k: 898	n:2780000
FNBP4   2780000 perm   3214 sec   (865 perm/sec)   p_kst 3.230216e-04   p_cons 9.464766e-01   p_joint 3.230216e-04

Joint ci ratio: 1.305730e-01	ci left: 3.018503e-04	ci right 3.443593e-04	k: 900	n:2790000
Cons ci ratio: 5.580076e-04	ci left: 9.462263e-01	ci right 9.467548e-01	k: 2640710	n:2790000
KS ci ratio: 1.305730e-01	ci left: 3.018503e-04	ci right 3.443593e-04	k: 900	n:2790000
FNBP4   2790000 perm   3235 sec   (862 perm/sec)   p_kst 3.225806e-04   p_cons 9.464910e-01   p_joint 3.225806e-04

Joint ci ratio: 1.302841e-01	ci left: 3.021543e-04	ci right 3.446046e-04	k: 904	n:2800000
Cons ci ratio: 5.570572e-04	ci left: 9.462182e-01	ci right 9.467458e-01	k: 2650151	n:2800000
KS ci ratio: 1.302841e-01	ci left: 3.021543e-04	ci right 3.446046e-04	k: 904	n:2800000
FNBP4   2800000 perm   3257 sec   (860 perm/sec)   p_kst 3.228571e-04   p_cons 9.464825e-01   p_joint 3.228571e-04

Joint ci ratio: 1.300687e-01	ci left: 3.021118e-04	ci right 3.444806e-04	k: 907	n:2810000
Cons ci ratio: 5.560238e-04	ci left: 9.462263e-01	ci right 9.467529e-01	k: 2659637	n:2810000
KS ci ratio: 1.300687e-01	ci left: 3.021118e-04	ci right 3.444806e-04	k: 907	n:2810000
FNBP4   2810000 perm   3278 sec   (857 perm/sec)   p_kst 3.227758e-04   p_cons 9.464900e-01   p_joint 3.227758e-04

Joint ci ratio: 1.299972e-01	ci left: 3.013836e-04	ci right 3.436252e-04	k: 908	n:2820000
Cons ci ratio: 5.550154e-04	ci left: 9.462307e-01	ci right 9.467563e-01	k: 2669113	n:2820000
KS ci ratio: 1.299972e-01	ci left: 3.013836e-04	ci right 3.436252e-04	k: 908	n:2820000
FNBP4   2820000 perm   3300 sec   (855 perm/sec)   p_kst 3.219858e-04   p_cons 9.464940e-01   p_joint 3.219858e-04

Joint ci ratio: 1.299258e-01	ci left: 3.006605e-04	ci right 3.427758e-04	k: 909	n:2830000
Cons ci ratio: 5.540880e-04	ci left: 9.462213e-01	ci right 9.467460e-01	k: 2678550	n:2830000
KS ci ratio: 1.299258e-01	ci left: 3.006605e-04	ci right 3.427758e-04	k: 909	n:2830000
FNBP4   2830000 perm   3321 sec   (852 perm/sec)   p_kst 3.212014e-04   p_cons 9.464841e-01   p_joint 3.212014e-04

Joint ci ratio: 1.296412e-01	ci left: 3.009646e-04	ci right 3.430230e-04	k: 913	n:2840000
Cons ci ratio: 5.531228e-04	ci left: 9.462197e-01	ci right 9.467435e-01	k: 2688009	n:2840000
KS ci ratio: 1.296412e-01	ci left: 3.009646e-04	ci right 3.430230e-04	k: 913	n:2840000
FNBP4   2840000 perm   3343 sec   (850 perm/sec)   p_kst 3.214789e-04   p_cons 9.464820e-01   p_joint 3.214789e-04

Joint ci ratio: 1.290774e-01	ci left: 3.026247e-04	ci right 3.447172e-04	k: 921	n:2850000
Cons ci ratio: 5.521168e-04	ci left: 9.462265e-01	ci right 9.467494e-01	k: 2697492	n:2850000
KS ci ratio: 1.290774e-01	ci left: 3.026247e-04	ci right 3.447172e-04	k: 921	n:2850000
FNBP4   2850000 perm   3365 sec   (847 perm/sec)   p_kst 3.231579e-04   p_cons 9.464884e-01   p_joint 3.231579e-04

Joint ci ratio: 1.290075e-01	ci left: 3.019050e-04	ci right 3.438728e-04	k: 922	n:2860000
Cons ci ratio: 5.511220e-04	ci left: 9.462323e-01	ci right 9.467542e-01	k: 2706972	n:2860000
KS ci ratio: 1.290075e-01	ci left: 3.019050e-04	ci right 3.438728e-04	k: 922	n:2860000
FNBP4   2860000 perm   3386 sec   (845 perm/sec)   p_kst 3.223776e-04   p_cons 9.464937e-01   p_joint 3.223776e-04

Joint ci ratio: 1.287289e-01	ci left: 3.022018e-04	ci right 3.441133e-04	k: 926	n:2870000
Cons ci ratio: 5.500965e-04	ci left: 9.462446e-01	ci right 9.467656e-01	k: 2716471	n:2870000
KS ci ratio: 1.287289e-01	ci left: 3.022018e-04	ci right 3.441133e-04	k: 926	n:2870000
FNBP4   2870000 perm   3408 sec   (842 perm/sec)   p_kst 3.226481e-04   p_cons 9.465056e-01   p_joint 3.226481e-04

Joint ci ratio: 1.284520e-01	ci left: 3.024967e-04	ci right 3.443520e-04	k: 930	n:2880000
Cons ci ratio: 5.491088e-04	ci left: 9.462510e-01	ci right 9.467710e-01	k: 2725953	n:2880000
KS ci ratio: 1.284520e-01	ci left: 3.024967e-04	ci right 3.443520e-04	k: 930	n:2880000
FNBP4   2880000 perm   3430 sec   (840 perm/sec)   p_kst 3.229167e-04   p_cons 9.465115e-01   p_joint 3.229167e-04

Joint ci ratio: 1.281084e-01	ci left: 3.031246e-04	ci right 3.449461e-04	k: 935	n:2890000
Cons ci ratio: 5.482274e-04	ci left: 9.462386e-01	ci right 9.467578e-01	k: 2735381	n:2890000
KS ci ratio: 1.281084e-01	ci left: 3.031246e-04	ci right 3.449461e-04	k: 935	n:2890000
FNBP4   2890000 perm   3453 sec   (837 perm/sec)   p_kst 3.235294e-04   p_cons 9.464986e-01   p_joint 3.235294e-04

Joint ci ratio: 1.277676e-01	ci left: 3.037483e-04	ci right 3.455359e-04	k: 940	n:2900000
Cons ci ratio: 5.472217e-04	ci left: 9.462501e-01	ci right 9.467684e-01	k: 2744878	n:2900000
KS ci ratio: 1.277676e-01	ci left: 3.037483e-04	ci right 3.455359e-04	k: 940	n:2900000
FNBP4   2900000 perm   3475 sec   (835 perm/sec)   p_kst 3.241379e-04   p_cons 9.465097e-01   p_joint 3.241379e-04

Joint ci ratio: 1.276321e-01	ci left: 3.033698e-04	ci right 3.450577e-04	k: 942	n:2910000
Cons ci ratio: 5.462605e-04	ci left: 9.462543e-01	ci right 9.467716e-01	k: 2754354	n:2910000
KS ci ratio: 1.276321e-01	ci left: 3.033698e-04	ci right 3.450577e-04	k: 942	n:2910000
FNBP4   2910000 perm   3497 sec   (832 perm/sec)   p_kst 3.237113e-04   p_cons 9.465134e-01   p_joint 3.237113e-04

Joint ci ratio: 1.274970e-01	ci left: 3.029940e-04	ci right 3.445828e-04	k: 944	n:2920000
Cons ci ratio: 5.453098e-04	ci left: 9.462574e-01	ci right 9.467739e-01	k: 2763827	n:2920000
KS ci ratio: 1.274970e-01	ci left: 3.029940e-04	ci right 3.445828e-04	k: 944	n:2920000
FNBP4   2920000 perm   3520 sec   (830 perm/sec)   p_kst 3.232877e-04   p_cons 9.465161e-01   p_joint 3.232877e-04

Joint ci ratio: 1.273623e-01	ci left: 3.026207e-04	ci right 3.441111e-04	k: 946	n:2930000
Cons ci ratio: 5.443512e-04	ci left: 9.462629e-01	ci right 9.467785e-01	k: 2773307	n:2930000
KS ci ratio: 1.273623e-01	ci left: 3.026207e-04	ci right 3.441111e-04	k: 946	n:2930000
FNBP4   2930000 perm   3542 sec   (827 perm/sec)   p_kst 3.228669e-04   p_cons 9.465212e-01   p_joint 3.228669e-04

Joint ci ratio: 1.272280e-01	ci left: 3.022500e-04	ci right 3.436426e-04	k: 948	n:2940000
Cons ci ratio: 5.434140e-04	ci left: 9.462653e-01	ci right 9.467800e-01	k: 2782778	n:2940000
KS ci ratio: 1.272280e-01	ci left: 3.022500e-04	ci right 3.436426e-04	k: 948	n:2940000
FNBP4   2940000 perm   3565 sec   (825 perm/sec)   p_kst 3.224490e-04   p_cons 9.465231e-01   p_joint 3.224490e-04

Joint ci ratio: 1.266950e-01	ci left: 3.038512e-04	ci right 3.452756e-04	k: 956	n:2950000
Cons ci ratio: 5.425417e-04	ci left: 9.462565e-01	ci right 9.467704e-01	k: 2792216	n:2950000
KS ci ratio: 1.266950e-01	ci left: 3.038512e-04	ci right 3.452756e-04	k: 956	n:2950000
FNBP4   2950000 perm   3587 sec   (822 perm/sec)   p_kst 3.240678e-04   p_cons 9.465139e-01   p_joint 3.240678e-04

Joint ci ratio: 1.263653e-01	ci left: 3.044604e-04	ci right 3.458517e-04	k: 961	n:2960000
Cons ci ratio: 5.415940e-04	ci left: 9.462627e-01	ci right 9.467756e-01	k: 2801698	n:2960000
KS ci ratio: 1.263653e-01	ci left: 3.044604e-04	ci right 3.458517e-04	k: 961	n:2960000
FNBP4   2960000 perm   3610 sec   (820 perm/sec)   p_kst 3.246622e-04   p_cons 9.465196e-01   p_joint 3.246622e-04

Joint ci ratio: 1.263654e-01	ci left: 3.034352e-04	ci right 3.446873e-04	k: 961	n:2970000
Cons ci ratio: 5.406872e-04	ci left: 9.462620e-01	ci right 9.467741e-01	k: 2811160	n:2970000
KS ci ratio: 1.263654e-01	ci left: 3.034352e-04	ci right 3.446873e-04	k: 961	n:2970000
FNBP4   2970000 perm   3633 sec   (818 perm/sec)   p_kst 3.235690e-04   p_cons 9.465185e-01   p_joint 3.235690e-04

Joint ci ratio: 1.259731e-01	ci left: 3.043669e-04	ci right 3.456075e-04	k: 967	n:2980000
Cons ci ratio: 5.397778e-04	ci left: 9.462627e-01	ci right 9.467740e-01	k: 2820626	n:2980000
KS ci ratio: 1.259731e-01	ci left: 3.043669e-04	ci right 3.456075e-04	k: 967	n:2980000
FNBP4   2980000 perm   3655 sec   (815 perm/sec)   p_kst 3.244966e-04   p_cons 9.465188e-01   p_joint 3.244966e-04

Joint ci ratio: 1.255200e-01	ci left: 3.056164e-04	ci right 3.468664e-04	k: 974	n:2990000
Cons ci ratio: 5.389423e-04	ci left: 9.462504e-01	ci right 9.467608e-01	k: 2830053	n:2990000
KS ci ratio: 1.255200e-01	ci left: 3.056164e-04	ci right 3.468664e-04	k: 974	n:2990000
FNBP4   2990000 perm   3678 sec   (813 perm/sec)   p_kst 3.257525e-04   p_cons 9.465060e-01   p_joint 3.257525e-04

Joint ci ratio: 1.252633e-01	ci left: 3.058892e-04	ci right 3.470853e-04	k: 978	n:3000000
Cons ci ratio: 5.379885e-04	ci left: 9.462611e-01	ci right 9.467707e-01	k: 2839549	n:3000000
KS ci ratio: 1.252633e-01	ci left: 3.058892e-04	ci right 3.470853e-04	k: 978	n:3000000
FNBP4   3000000 perm   3702 sec   (810 perm/sec)   p_kst 3.260000e-04   p_cons 9.465163e-01   p_joint 3.260000e-04

Joint ci ratio: 1.250081e-01	ci left: 3.061603e-04	ci right 3.473027e-04	k: 982	n:3010000
Cons ci ratio: 5.370415e-04	ci left: 9.462715e-01	ci right 9.467801e-01	k: 2849044	n:3010000
KS ci ratio: 1.250081e-01	ci left: 3.061603e-04	ci right 3.473027e-04	k: 982	n:3010000
FNBP4   3010000 perm   3725 sec   (808 perm/sec)   p_kst 3.262458e-04   p_cons 9.465262e-01   p_joint 3.262458e-04

Joint ci ratio: 1.245653e-01	ci left: 3.073921e-04	ci right 3.485428e-04	k: 989	n:3020000
Cons ci ratio: 5.361258e-04	ci left: 9.462768e-01	ci right 9.467846e-01	k: 2858524	n:3020000
KS ci ratio: 1.245653e-01	ci left: 3.073921e-04	ci right 3.485428e-04	k: 989	n:3020000
FNBP4   3020000 perm   3748 sec   (806 perm/sec)   p_kst 3.274834e-04   p_cons 9.465311e-01   p_joint 3.274834e-04

Joint ci ratio: 1.242519e-01	ci left: 3.079764e-04	ci right 3.490940e-04	k: 994	n:3030000
Cons ci ratio: 5.352566e-04	ci left: 9.462741e-01	ci right 9.467811e-01	k: 2867980	n:3030000
KS ci ratio: 1.242519e-01	ci left: 3.079764e-04	ci right 3.490940e-04	k: 994	n:3030000
FNBP4   3030000 perm   3771 sec   (804 perm/sec)   p_kst 3.280528e-04   p_cons 9.465281e-01   p_joint 3.280528e-04

Joint ci ratio: 1.238789e-01	ci left: 3.088758e-04	ci right 3.499806e-04	k: 1000	n:3040000
Cons ci ratio: 5.343639e-04	ci left: 9.462768e-01	ci right 9.467829e-01	k: 2877452	n:3040000
KS ci ratio: 1.238789e-01	ci left: 3.088758e-04	ci right 3.499806e-04	k: 1000	n:3040000
FNBP4   3040000 perm   3794 sec   (801 perm/sec)   p_kst 3.289474e-04   p_cons 9.465303e-01   p_joint 3.289474e-04

Joint ci ratio: 1.234480e-01	ci left: 3.100871e-04	ci right 3.511991e-04	k: 1007	n:3050000
Cons ci ratio: 5.335050e-04	ci left: 9.462738e-01	ci right 9.467791e-01	k: 2886907	n:3050000
KS ci ratio: 1.234480e-01	ci left: 3.100871e-04	ci right 3.511991e-04	k: 1007	n:3050000
FNBP4   3050000 perm   3818 sec   (799 perm/sec)   p_kst 3.301639e-04   p_cons 9.465269e-01   p_joint 3.301639e-04

Joint ci ratio: 1.232647e-01	ci left: 3.100239e-04	ci right 3.510620e-04	k: 1010	n:3060000
Cons ci ratio: 5.326209e-04	ci left: 9.462764e-01	ci right 9.467809e-01	k: 2896379	n:3060000
KS ci ratio: 1.232647e-01	ci left: 3.100239e-04	ci right 3.510620e-04	k: 1010	n:3060000
FNBP4   3060000 perm   3841 sec   (797 perm/sec)   p_kst 3.300654e-04   p_cons 9.465291e-01   p_joint 3.300654e-04

Joint ci ratio: 1.231430e-01	ci left: 3.096455e-04	ci right 3.505901e-04	k: 1012	n:3070000
Cons ci ratio: 5.318302e-04	ci left: 9.462621e-01	ci right 9.467658e-01	k: 2905799	n:3070000
KS ci ratio: 1.231430e-01	ci left: 3.096455e-04	ci right 3.505901e-04	k: 1012	n:3070000
FNBP4   3070000 perm   3866 sec   (794 perm/sec)   p_kst 3.296417e-04   p_cons 9.465143e-01   p_joint 3.296417e-04

Joint ci ratio: 1.230216e-01	ci left: 3.092695e-04	ci right 3.501211e-04	k: 1014	n:3080000
Cons ci ratio: 5.309494e-04	ci left: 9.462657e-01	ci right 9.467685e-01	k: 2915274	n:3080000
KS ci ratio: 1.230216e-01	ci left: 3.092695e-04	ci right 3.501211e-04	k: 1014	n:3080000
FNBP4   3080000 perm   3890 sec   (792 perm/sec)   p_kst 3.292208e-04   p_cons 9.465175e-01   p_joint 3.292208e-04

Joint ci ratio: 1.228402e-01	ci left: 3.092096e-04	ci right 3.499888e-04	k: 1017	n:3090000
Cons ci ratio: 5.300763e-04	ci left: 9.462686e-01	ci right 9.467707e-01	k: 2924747	n:3090000
KS ci ratio: 1.228402e-01	ci left: 3.092096e-04	ci right 3.499888e-04	k: 1017	n:3090000
FNBP4   3090000 perm   3914 sec   (790 perm/sec)   p_kst 3.291262e-04   p_cons 9.465201e-01   p_joint 3.291262e-04

Joint ci ratio: 1.227197e-01	ci left: 3.088375e-04	ci right 3.495247e-04	k: 1019	n:3100000
Cons ci ratio: 5.291906e-04	ci left: 9.462748e-01	ci right 9.467760e-01	k: 2934230	n:3100000
KS ci ratio: 1.227197e-01	ci left: 3.088375e-04	ci right 3.495247e-04	k: 1019	n:3100000
FNBP4   3100000 perm   3937 sec   (787 perm/sec)   p_kst 3.287097e-04   p_cons 9.465258e-01   p_joint 3.287097e-04

Joint ci ratio: 1.225397e-01	ci left: 3.087795e-04	ci right 3.493951e-04	k: 1022	n:3110000
Cons ci ratio: 5.283245e-04	ci left: 9.462780e-01	ci right 9.467784e-01	k: 2943704	n:3110000
KS ci ratio: 1.225397e-01	ci left: 3.087795e-04	ci right 3.493951e-04	k: 1022	n:3110000
FNBP4   3110000 perm   3961 sec   (785 perm/sec)   p_kst 3.286174e-04   p_cons 9.465286e-01   p_joint 3.286174e-04

Joint ci ratio: 1.221818e-01	ci left: 3.096541e-04	ci right 3.502571e-04	k: 1028	n:3120000
Cons ci ratio: 5.274843e-04	ci left: 9.462770e-01	ci right 9.467766e-01	k: 2953165	n:3120000
KS ci ratio: 1.221818e-01	ci left: 3.096541e-04	ci right 3.502571e-04	k: 1028	n:3120000
FNBP4   3120000 perm   3985 sec   (783 perm/sec)   p_kst 3.294872e-04   p_cons 9.465272e-01   p_joint 3.294872e-04

Joint ci ratio: 1.218860e-01	ci left: 3.102134e-04	ci right 3.507842e-04	k: 1033	n:3130000
Cons ci ratio: 5.266231e-04	ci left: 9.462809e-01	ci right 9.467796e-01	k: 2962641	n:3130000
KS ci ratio: 1.218860e-01	ci left: 3.102134e-04	ci right 3.507842e-04	k: 1033	n:3130000
FNBP4   3130000 perm   4009 sec   (781 perm/sec)   p_kst 3.300319e-04   p_cons 9.465307e-01   p_joint 3.300319e-04

Joint ci ratio: 1.217684e-01	ci left: 3.098430e-04	ci right 3.503234e-04	k: 1035	n:3140000
Cons ci ratio: 5.258043e-04	ci left: 9.462773e-01	ci right 9.467753e-01	k: 2972094	n:3140000
KS ci ratio: 1.217684e-01	ci left: 3.098430e-04	ci right 3.503234e-04	k: 1035	n:3140000
FNBP4   3140000 perm   4033 sec   (779 perm/sec)   p_kst 3.296178e-04   p_cons 9.465268e-01   p_joint 3.296178e-04

Joint ci ratio: 1.215340e-01	ci left: 3.100906e-04	ci right 3.505198e-04	k: 1039	n:3150000
Cons ci ratio: 5.250270e-04	ci left: 9.462665e-01	ci right 9.467638e-01	k: 2981524	n:3150000
KS ci ratio: 1.215340e-01	ci left: 3.100906e-04	ci right 3.505198e-04	k: 1039	n:3150000
FNBP4   3150000 perm   4057 sec   (776 perm/sec)   p_kst 3.298413e-04   p_cons 9.465156e-01   p_joint 3.298413e-04

Joint ci ratio: 1.212428e-01	ci left: 3.106435e-04	ci right 3.510408e-04	k: 1044	n:3160000
Cons ci ratio: 5.242401e-04	ci left: 9.462583e-01	ci right 9.467548e-01	k: 2990962	n:3160000
KS ci ratio: 1.212428e-01	ci left: 3.106435e-04	ci right 3.510408e-04	k: 1044	n:3160000
FNBP4   3160000 perm   4082 sec   (774 perm/sec)   p_kst 3.303797e-04   p_cons 9.465070e-01   p_joint 3.303797e-04

Joint ci ratio: 1.211270e-01	ci left: 3.102754e-04	ci right 3.505835e-04	k: 1046	n:3170000
Cons ci ratio: 5.234306e-04	ci left: 9.462552e-01	ci right 9.467509e-01	k: 3000416	n:3170000
KS ci ratio: 1.211270e-01	ci left: 3.102754e-04	ci right 3.505835e-04	k: 1046	n:3170000
FNBP4   3170000 perm   4106 sec   (772 perm/sec)   p_kst 3.299685e-04   p_cons 9.465035e-01   p_joint 3.299685e-04

Joint ci ratio: 1.208963e-01	ci left: 3.105195e-04	ci right 3.507769e-04	k: 1050	n:3180000
Cons ci ratio: 5.225519e-04	ci left: 9.462663e-01	ci right 9.467612e-01	k: 3009915	n:3180000
KS ci ratio: 1.208963e-01	ci left: 3.105195e-04	ci right 3.507769e-04	k: 1050	n:3180000
FNBP4   3180000 perm   4131 sec   (770 perm/sec)   p_kst 3.301887e-04   p_cons 9.465142e-01   p_joint 3.301887e-04

Joint ci ratio: 1.206668e-01	ci left: 3.107621e-04	ci right 3.509691e-04	k: 1054	n:3190000
Cons ci ratio: 5.217405e-04	ci left: 9.462651e-01	ci right 9.467592e-01	k: 3019375	n:3190000
KS ci ratio: 1.206668e-01	ci left: 3.107621e-04	ci right 3.509691e-04	k: 1054	n:3190000
FNBP4   3190000 perm   4155 sec   (768 perm/sec)   p_kst 3.304075e-04   p_cons 9.465125e-01   p_joint 3.304075e-04

Joint ci ratio: 1.203251e-01	ci left: 3.116094e-04	ci right 3.518038e-04	k: 1060	n:3200000
Cons ci ratio: 5.209505e-04	ci left: 9.462604e-01	ci right 9.467538e-01	k: 3028824	n:3200000
KS ci ratio: 1.203251e-01	ci left: 3.116094e-04	ci right 3.518038e-04	k: 1060	n:3200000
FNBP4   3200000 perm   4180 sec   (766 perm/sec)   p_kst 3.312500e-04   p_cons 9.465075e-01   p_joint 3.312500e-04

Joint ci ratio: 1.200989e-01	ci left: 3.118473e-04	ci right 3.519914e-04	k: 1064	n:3210000
Cons ci ratio: 5.201642e-04	ci left: 9.462558e-01	ci right 9.467484e-01	k: 3038273	n:3210000
KS ci ratio: 1.200989e-01	ci left: 3.118473e-04	ci right 3.519914e-04	k: 1064	n:3210000
FNBP4   3210000 perm   4205 sec   (763 perm/sec)   p_kst 3.314642e-04   p_cons 9.465025e-01   p_joint 3.314642e-04

Joint ci ratio: 1.198740e-01	ci left: 3.120838e-04	ci right 3.521777e-04	k: 1068	n:3220000
Cons ci ratio: 5.193893e-04	ci left: 9.462496e-01	ci right 9.467415e-01	k: 3047717	n:3220000
KS ci ratio: 1.198740e-01	ci left: 3.120838e-04	ci right 3.521777e-04	k: 1068	n:3220000
FNBP4   3220000 perm   4229 sec   (761 perm/sec)   p_kst 3.316770e-04   p_cons 9.464960e-01   p_joint 3.316770e-04

Joint ci ratio: 1.197621e-01	ci left: 3.117182e-04	ci right 3.517252e-04	k: 1070	n:3230000
Cons ci ratio: 5.185973e-04	ci left: 9.462475e-01	ci right 9.467387e-01	k: 3057174	n:3230000
KS ci ratio: 1.197621e-01	ci left: 3.117182e-04	ci right 3.517252e-04	k: 1070	n:3230000
FNBP4   3230000 perm   4254 sec   (759 perm/sec)   p_kst 3.312693e-04   p_cons 9.464935e-01   p_joint 3.312693e-04

Joint ci ratio: 1.197062e-01	ci left: 3.110555e-04	ci right 3.509575e-04	k: 1071	n:3240000
Cons ci ratio: 5.178199e-04	ci left: 9.462433e-01	ci right 9.467337e-01	k: 3066624	n:3240000
KS ci ratio: 1.197062e-01	ci left: 3.110555e-04	ci right 3.509575e-04	k: 1071	n:3240000
FNBP4   3240000 perm   4278 sec   (757 perm/sec)   p_kst 3.305556e-04   p_cons 9.464889e-01   p_joint 3.305556e-04

Joint ci ratio: 1.193726e-01	ci left: 3.118894e-04	ci right 3.517789e-04	k: 1077	n:3250000
Cons ci ratio: 5.170570e-04	ci left: 9.462369e-01	ci right 9.467266e-01	k: 3076067	n:3250000
KS ci ratio: 1.193726e-01	ci left: 3.118894e-04	ci right 3.517789e-04	k: 1077	n:3250000
FNBP4   3250000 perm   4304 sec   (755 perm/sec)   p_kst 3.313846e-04   p_cons 9.464822e-01   p_joint 3.313846e-04

Joint ci ratio: 1.193173e-01	ci left: 3.112303e-04	ci right 3.510158e-04	k: 1078	n:3260000
Cons ci ratio: 5.163256e-04	ci left: 9.462251e-01	ci right 9.467140e-01	k: 3085492	n:3260000
KS ci ratio: 1.193173e-01	ci left: 3.112303e-04	ci right 3.510158e-04	k: 1078	n:3260000
FNBP4   3260000 perm   4328 sec   (753 perm/sec)   p_kst 3.306748e-04   p_cons 9.464699e-01   p_joint 3.306748e-04

Joint ci ratio: 1.189869e-01	ci left: 3.120587e-04	ci right 3.518318e-04	k: 1084	n:3270000
Cons ci ratio: 5.155584e-04	ci left: 9.462209e-01	ci right 9.467092e-01	k: 3094942	n:3270000
KS ci ratio: 1.189869e-01	ci left: 3.120587e-04	ci right 3.518318e-04	k: 1084	n:3270000
FNBP4   3270000 perm   4353 sec   (751 perm/sec)   p_kst 3.314985e-04   p_cons 9.464654e-01   p_joint 3.314985e-04

Joint ci ratio: 1.186048e-01	ci left: 3.131780e-04	ci right 3.529567e-04	k: 1091	n:3280000
Cons ci ratio: 5.147404e-04	ci left: 9.462275e-01	ci right 9.467150e-01	k: 3104427	n:3280000
KS ci ratio: 1.186048e-01	ci left: 3.131780e-04	ci right 3.529567e-04	k: 1091	n:3280000
FNBP4   3280000 perm   4378 sec   (749 perm/sec)   p_kst 3.326220e-04   p_cons 9.464716e-01   p_joint 3.326220e-04

Joint ci ratio: 1.185506e-01	ci left: 3.125211e-04	ci right 3.521968e-04	k: 1092	n:3290000
Cons ci ratio: 5.139725e-04	ci left: 9.462249e-01	ci right 9.467117e-01	k: 3113882	n:3290000
KS ci ratio: 1.185506e-01	ci left: 3.125211e-04	ci right 3.521968e-04	k: 1092	n:3290000
FNBP4   3290000 perm   4404 sec   (747 perm/sec)   p_kst 3.319149e-04   p_cons 9.464687e-01   p_joint 3.319149e-04

Joint ci ratio: 1.181190e-01	ci left: 3.139265e-04	ci right 3.536255e-04	k: 1100	n:3300000
Cons ci ratio: 5.132080e-04	ci left: 9.462224e-01	ci right 9.467084e-01	k: 3123337	n:3300000
KS ci ratio: 1.181190e-01	ci left: 3.139265e-04	ci right 3.536255e-04	k: 1100	n:3300000
FNBP4   3300000 perm   4429 sec   (745 perm/sec)   p_kst 3.333333e-04   p_cons 9.464658e-01   p_joint 3.333333e-04

Joint ci ratio: 1.179584e-01	ci left: 3.138577e-04	ci right 3.534903e-04	k: 1103	n:3310000
Cons ci ratio: 5.124775e-04	ci left: 9.462137e-01	ci right 9.466991e-01	k: 3132772	n:3310000
KS ci ratio: 1.179584e-01	ci left: 3.138577e-04	ci right 3.534903e-04	k: 1103	n:3310000
FNBP4   3310000 perm   4454 sec   (743 perm/sec)   p_kst 3.332326e-04   p_cons 9.464568e-01   p_joint 3.332326e-04

Joint ci ratio: 1.178518e-01	ci left: 3.134970e-04	ci right 3.530457e-04	k: 1105	n:3320000
Cons ci ratio: 5.117121e-04	ci left: 9.462127e-01	ci right 9.466973e-01	k: 3142232	n:3320000
KS ci ratio: 1.178518e-01	ci left: 3.134970e-04	ci right 3.530457e-04	k: 1105	n:3320000
FNBP4   3320000 perm   4479 sec   (741 perm/sec)   p_kst 3.328313e-04   p_cons 9.464554e-01   p_joint 3.328313e-04

Joint ci ratio: 1.175862e-01	ci left: 3.140128e-04	ci right 3.535312e-04	k: 1110	n:3330000
Cons ci ratio: 5.109410e-04	ci left: 9.462135e-01	ci right 9.466974e-01	k: 3151698	n:3330000
KS ci ratio: 1.175862e-01	ci left: 3.140128e-04	ci right 3.535312e-04	k: 1110	n:3330000
FNBP4   3330000 perm   4505 sec   (739 perm/sec)   p_kst 3.333333e-04   p_cons 9.464559e-01   p_joint 3.333333e-04

Joint ci ratio: 1.174806e-01	ci left: 3.136539e-04	ci right 3.530891e-04	k: 1112	n:3340000
Cons ci ratio: 5.101718e-04	ci left: 9.462146e-01	ci right 9.466978e-01	k: 3161165	n:3340000
KS ci ratio: 1.174806e-01	ci left: 3.136539e-04	ci right 3.530891e-04	k: 1112	n:3340000
FNBP4   3340000 perm   4530 sec   (737 perm/sec)   p_kst 3.329341e-04   p_cons 9.464566e-01   p_joint 3.329341e-04

Joint ci ratio: 1.172175e-01	ci left: 3.141663e-04	ci right 3.535715e-04	k: 1117	n:3350000
Cons ci ratio: 5.094121e-04	ci left: 9.462145e-01	ci right 9.466969e-01	k: 3170628	n:3350000
KS ci ratio: 1.172175e-01	ci left: 3.141663e-04	ci right 3.535715e-04	k: 1117	n:3350000
FNBP4   3350000 perm   4555 sec   (735 perm/sec)   p_kst 3.334328e-04   p_cons 9.464561e-01   p_joint 3.334328e-04

Joint ci ratio: 1.170606e-01	ci left: 3.140980e-04	ci right 3.534382e-04	k: 1120	n:3360000
Cons ci ratio: 5.087036e-04	ci left: 9.462049e-01	ci right 9.466866e-01	k: 3180059	n:3360000
KS ci ratio: 1.170606e-01	ci left: 3.140980e-04	ci right 3.534382e-04	k: 1120	n:3360000
FNBP4   3360000 perm   4581 sec   (734 perm/sec)   p_kst 3.333333e-04   p_cons 9.464461e-01   p_joint 3.333333e-04

Joint ci ratio: 1.169563e-01	ci left: 3.137421e-04	ci right 3.530002e-04	k: 1122	n:3370000
Cons ci ratio: 5.080263e-04	ci left: 9.461896e-01	ci right 9.466707e-01	k: 3189471	n:3370000
KS ci ratio: 1.169563e-01	ci left: 3.137421e-04	ci right 3.530002e-04	k: 1122	n:3370000
FNBP4   3370000 perm   4607 sec   (732 perm/sec)   p_kst 3.329377e-04   p_cons 9.464306e-01   p_joint 3.329377e-04

Joint ci ratio: 1.168004e-01	ci left: 3.136755e-04	ci right 3.528694e-04	k: 1125	n:3380000
Cons ci ratio: 5.072288e-04	ci left: 9.461991e-01	ci right 9.466794e-01	k: 3198966	n:3380000
KS ci ratio: 1.168004e-01	ci left: 3.136755e-04	ci right 3.528694e-04	k: 1125	n:3380000
FNBP4   3380000 perm   4633 sec   (730 perm/sec)   p_kst 3.328402e-04   p_cons 9.464396e-01   p_joint 3.328402e-04

Joint ci ratio: 1.166969e-01	ci left: 3.133229e-04	ci right 3.524356e-04	k: 1127	n:3390000
Cons ci ratio: 5.065279e-04	ci left: 9.461899e-01	ci right 9.466695e-01	k: 3208398	n:3390000
KS ci ratio: 1.166969e-01	ci left: 3.133229e-04	ci right 3.524356e-04	k: 1127	n:3390000
FNBP4   3390000 perm   4659 sec   (728 perm/sec)   p_kst 3.324484e-04   p_cons 9.464301e-01   p_joint 3.324484e-04

Joint ci ratio: 1.165420e-01	ci left: 3.132580e-04	ci right 3.523071e-04	k: 1130	n:3400000
Cons ci ratio: 5.057359e-04	ci left: 9.461996e-01	ci right 9.466785e-01	k: 3217894	n:3400000
KS ci ratio: 1.165420e-01	ci left: 3.132580e-04	ci right 3.523071e-04	k: 1130	n:3400000
FNBP4   3400000 perm   4685 sec   (726 perm/sec)   p_kst 3.323529e-04   p_cons 9.464394e-01   p_joint 3.323529e-04

Joint ci ratio: 1.163877e-01	ci left: 3.131935e-04	ci right 3.521794e-04	k: 1133	n:3410000
Cons ci ratio: 5.050280e-04	ci left: 9.461930e-01	ci right 9.466713e-01	k: 3227335	n:3410000
KS ci ratio: 1.163877e-01	ci left: 3.131935e-04	ci right 3.521794e-04	k: 1133	n:3410000
FNBP4   3410000 perm   4711 sec   (724 perm/sec)   p_kst 3.322581e-04   p_cons 9.464326e-01   p_joint 3.322581e-04

Joint ci ratio: 1.162341e-01	ci left: 3.131294e-04	ci right 3.520523e-04	k: 1136	n:3420000
Cons ci ratio: 5.043041e-04	ci left: 9.461904e-01	ci right 9.466679e-01	k: 3236789	n:3420000
KS ci ratio: 1.162341e-01	ci left: 3.131294e-04	ci right 3.520523e-04	k: 1136	n:3420000
FNBP4   3420000 perm   4737 sec   (722 perm/sec)   p_kst 3.321637e-04   p_cons 9.464295e-01   p_joint 3.321637e-04

Joint ci ratio: 1.160302e-01	ci left: 3.133488e-04	ci right 3.522260e-04	k: 1140	n:3430000
Cons ci ratio: 5.035385e-04	ci left: 9.461968e-01	ci right 9.466736e-01	k: 3246274	n:3430000
KS ci ratio: 1.160302e-01	ci left: 3.133488e-04	ci right 3.522260e-04	k: 1140	n:3430000
FNBP4   3430000 perm   4763 sec   (720 perm/sec)   p_kst 3.323615e-04   p_cons 9.464356e-01   p_joint 3.323615e-04

Joint ci ratio: 1.159794e-01	ci left: 3.127201e-04	ci right 3.515012e-04	k: 1141	n:3440000
Cons ci ratio: 5.028109e-04	ci left: 9.461961e-01	ci right 9.466723e-01	k: 3255735	n:3440000
KS ci ratio: 1.159794e-01	ci left: 3.127201e-04	ci right 3.515012e-04	k: 1141	n:3440000
FNBP4   3440000 perm   4790 sec   (718 perm/sec)   p_kst 3.316860e-04   p_cons 9.464346e-01   p_joint 3.316860e-04

Joint ci ratio: 1.157768e-01	ci left: 3.129395e-04	ci right 3.516753e-04	k: 1145	n:3450000
Cons ci ratio: 5.021166e-04	ci left: 9.461894e-01	ci right 9.466649e-01	k: 3265175	n:3450000
KS ci ratio: 1.157768e-01	ci left: 3.129395e-04	ci right 3.516753e-04	k: 1145	n:3450000
FNBP4   3450000 perm   4816 sec   (716 perm/sec)   p_kst 3.318841e-04   p_cons 9.464275e-01   p_joint 3.318841e-04

Joint ci ratio: 1.154248e-01	ci left: 3.139997e-04	ci right 3.527405e-04	k: 1152	n:3460000
Cons ci ratio: 5.014166e-04	ci left: 9.461845e-01	ci right 9.466593e-01	k: 3274621	n:3460000
KS ci ratio: 1.154248e-01	ci left: 3.139997e-04	ci right 3.527405e-04	k: 1152	n:3460000
FNBP4   3460000 perm   4843 sec   (714 perm/sec)   p_kst 3.329480e-04   p_cons 9.464223e-01   p_joint 3.329480e-04

Joint ci ratio: 1.153248e-01	ci left: 3.136545e-04	ci right 3.523170e-04	k: 1154	n:3470000
Cons ci ratio: 5.006668e-04	ci left: 9.461902e-01	ci right 9.466644e-01	k: 3284104	n:3470000
KS ci ratio: 1.153248e-01	ci left: 3.136545e-04	ci right 3.523170e-04	k: 1154	n:3470000
FNBP4   3470000 perm   4869 sec   (713 perm/sec)   p_kst 3.325648e-04   p_cons 9.464277e-01   p_joint 3.325648e-04

Joint ci ratio: 1.150760e-01	ci left: 3.141486e-04	ci right 3.527827e-04	k: 1159	n:3480000
Cons ci ratio: 4.999020e-04	ci left: 9.461997e-01	ci right 9.466731e-01	k: 3293600	n:3480000
KS ci ratio: 1.150760e-01	ci left: 3.141486e-04	ci right 3.527827e-04	k: 1159	n:3480000
FNBP4   3480000 perm   4895 sec   (711 perm/sec)   p_kst 3.330460e-04   p_cons 9.464368e-01   p_joint 3.330460e-04

Joint ci ratio: 1.148287e-01	ci left: 3.146399e-04	ci right 3.532457e-04	k: 1164	n:3490000
Cons ci ratio: 4.991209e-04	ci left: 9.462132e-01	ci right 9.466858e-01	k: 3303110	n:3490000
KS ci ratio: 1.148287e-01	ci left: 3.146399e-04	ci right 3.532457e-04	k: 1164	n:3490000
FNBP4   3490000 perm   4922 sec   (709 perm/sec)   p_kst 3.335244e-04   p_cons 9.464499e-01   p_joint 3.335244e-04

Joint ci ratio: 1.146321e-01	ci left: 3.148510e-04	ci right 3.534121e-04	k: 1168	n:3500000
Cons ci ratio: 4.983926e-04	ci left: 9.462165e-01	ci right 9.466885e-01	k: 3312585	n:3500000
KS ci ratio: 1.146321e-01	ci left: 3.148510e-04	ci right 3.534121e-04	k: 1168	n:3500000
FNBP4   3500000 perm   4948 sec   (707 perm/sec)   p_kst 3.337143e-04   p_cons 9.464529e-01   p_joint 3.337143e-04

Joint ci ratio: 1.143390e-01	ci left: 3.156145e-04	ci right 3.541635e-04	k: 1174	n:3510000
Cons ci ratio: 4.976605e-04	ci left: 9.462213e-01	ci right 9.466925e-01	k: 3322065	n:3510000
KS ci ratio: 1.143390e-01	ci left: 3.156145e-04	ci right 3.541635e-04	k: 1174	n:3510000
FNBP4   3510000 perm   4975 sec   (706 perm/sec)   p_kst 3.344729e-04   p_cons 9.464573e-01   p_joint 3.344729e-04

Joint ci ratio: 1.141449e-01	ci left: 3.158217e-04	ci right 3.543262e-04	k: 1178	n:3520000
Cons ci ratio: 4.968884e-04	ci left: 9.462348e-01	ci right 9.467054e-01	k: 3331576	n:3520000
KS ci ratio: 1.141449e-01	ci left: 3.158217e-04	ci right 3.543262e-04	k: 1178	n:3520000
FNBP4   3520000 perm   5002 sec   (704 perm/sec)   p_kst 3.346591e-04   p_cons 9.464705e-01   p_joint 3.346591e-04

Joint ci ratio: 1.139036e-01	ci left: 3.163031e-04	ci right 3.547793e-04	k: 1183	n:3530000
Cons ci ratio: 4.962101e-04	ci left: 9.462298e-01	ci right 9.466997e-01	k: 3341022	n:3530000
KS ci ratio: 1.139036e-01	ci left: 3.163031e-04	ci right 3.547793e-04	k: 1183	n:3530000
FNBP4   3530000 perm   5028 sec   (702 perm/sec)   p_kst 3.351275e-04   p_cons 9.464652e-01   p_joint 3.351275e-04

Joint ci ratio: 1.137595e-01	ci left: 3.162329e-04	ci right 3.546486e-04	k: 1186	n:3540000
Cons ci ratio: 4.954516e-04	ci left: 9.462419e-01	ci right 9.467111e-01	k: 3350528	n:3540000
KS ci ratio: 1.137595e-01	ci left: 3.162329e-04	ci right 3.546486e-04	k: 1186	n:3540000
FNBP4   3540000 perm   5055 sec   (700 perm/sec)   p_kst 3.350282e-04   p_cons 9.464768e-01   p_joint 3.350282e-04

Joint ci ratio: 1.136638e-01	ci left: 3.158895e-04	ci right 3.542290e-04	k: 1188	n:3550000
Cons ci ratio: 4.947282e-04	ci left: 9.462473e-01	ci right 9.467159e-01	k: 3360011	n:3550000
KS ci ratio: 1.136638e-01	ci left: 3.158895e-04	ci right 3.542290e-04	k: 1188	n:3550000
FNBP4   3550000 perm   5082 sec   (699 perm/sec)   p_kst 3.346479e-04   p_cons 9.464820e-01   p_joint 3.346479e-04

Joint ci ratio: 1.135684e-01	ci left: 3.155480e-04	ci right 3.538118e-04	k: 1190	n:3560000
Cons ci ratio: 4.940395e-04	ci left: 9.462463e-01	ci right 9.467142e-01	k: 3369471	n:3560000
KS ci ratio: 1.135684e-01	ci left: 3.155480e-04	ci right 3.538118e-04	k: 1190	n:3560000
FNBP4   3560000 perm   5110 sec   (697 perm/sec)   p_kst 3.342697e-04   p_cons 9.464806e-01   p_joint 3.342697e-04

Joint ci ratio: 1.135208e-01	ci left: 3.149362e-04	ci right 3.531088e-04	k: 1191	n:3570000
Cons ci ratio: 4.933454e-04	ci left: 9.462470e-01	ci right 9.467142e-01	k: 3378937	n:3570000
KS ci ratio: 1.135208e-01	ci left: 3.149362e-04	ci right 3.531088e-04	k: 1191	n:3570000
FNBP4   3570000 perm   5137 sec   (695 perm/sec)   p_kst 3.336134e-04   p_cons 9.464810e-01   p_joint 3.336134e-04

Joint ci ratio: 1.131889e-01	ci left: 3.159564e-04	ci right 3.541331e-04	k: 1198	n:3580000
Cons ci ratio: 4.926475e-04	ci left: 9.462490e-01	ci right 9.467156e-01	k: 3388408	n:3580000
KS ci ratio: 1.131889e-01	ci left: 3.159564e-04	ci right 3.541331e-04	k: 1198	n:3580000
FNBP4   3580000 perm   5163 sec   (693 perm/sec)   p_kst 3.346369e-04   p_cons 9.464827e-01   p_joint 3.346369e-04

Joint ci ratio: 1.130475e-01	ci left: 3.158883e-04	ci right 3.540060e-04	k: 1201	n:3590000
Cons ci ratio: 4.919458e-04	ci left: 9.462525e-01	ci right 9.467184e-01	k: 3397884	n:3590000
KS ci ratio: 1.130475e-01	ci left: 3.158883e-04	ci right 3.540060e-04	k: 1201	n:3590000
FNBP4   3590000 perm   5190 sec   (692 perm/sec)   p_kst 3.345404e-04   p_cons 9.464858e-01   p_joint 3.345404e-04

Joint ci ratio: 1.130006e-01	ci left: 3.152808e-04	ci right 3.533083e-04	k: 1202	n:3600000
Cons ci ratio: 4.912484e-04	ci left: 9.462556e-01	ci right 9.467209e-01	k: 3407359	n:3600000
KS ci ratio: 1.130006e-01	ci left: 3.152808e-04	ci right 3.533083e-04	k: 1202	n:3600000
FNBP4   3600000 perm   5217 sec   (690 perm/sec)   p_kst 3.338889e-04   p_cons 9.464886e-01   p_joint 3.338889e-04

Joint ci ratio: 1.129068e-01	ci left: 3.149458e-04	ci right 3.528992e-04	k: 1204	n:3610000
Cons ci ratio: 4.906036e-04	ci left: 9.462485e-01	ci right 9.467131e-01	k: 3416797	n:3610000
KS ci ratio: 1.129068e-01	ci left: 3.149458e-04	ci right 3.528992e-04	k: 1204	n:3610000
FNBP4   3610000 perm   5244 sec   (688 perm/sec)   p_kst 3.335180e-04   p_cons 9.464812e-01   p_joint 3.335180e-04

Joint ci ratio: 1.128600e-01	ci left: 3.143442e-04	ci right 3.522084e-04	k: 1205	n:3620000
Cons ci ratio: 4.899506e-04	ci left: 9.462436e-01	ci right 9.467076e-01	k: 3426243	n:3620000
KS ci ratio: 1.128600e-01	ci left: 3.143442e-04	ci right 3.522084e-04	k: 1205	n:3620000
FNBP4   3620000 perm   5272 sec   (687 perm/sec)   p_kst 3.328729e-04   p_cons 9.464760e-01   p_joint 3.328729e-04

Joint ci ratio: 1.127199e-01	ci left: 3.142814e-04	ci right 3.520879e-04	k: 1208	n:3630000
Cons ci ratio: 4.892869e-04	ci left: 9.462415e-01	ci right 9.467049e-01	k: 3435699	n:3630000
KS ci ratio: 1.127199e-01	ci left: 3.142814e-04	ci right 3.520879e-04	k: 1208	n:3630000
FNBP4   3630000 perm   5299 sec   (685 perm/sec)   p_kst 3.327824e-04   p_cons 9.464736e-01   p_joint 3.327824e-04

Joint ci ratio: 1.126733e-01	ci left: 3.136849e-04	ci right 3.514031e-04	k: 1209	n:3640000
Cons ci ratio: 4.885742e-04	ci left: 9.462502e-01	ci right 9.467129e-01	k: 3445194	n:3640000
KS ci ratio: 1.126733e-01	ci left: 3.136849e-04	ci right 3.514031e-04	k: 1209	n:3640000
FNBP4   3640000 perm   5326 sec   (683 perm/sec)   p_kst 3.321429e-04   p_cons 9.464819e-01   p_joint 3.321429e-04

Joint ci ratio: 1.124412e-01	ci left: 3.141568e-04	ci right 3.518488e-04	k: 1214	n:3650000
Cons ci ratio: 4.879399e-04	ci left: 9.462431e-01	ci right 9.467052e-01	k: 3454632	n:3650000
KS ci ratio: 1.124412e-01	ci left: 3.141568e-04	ci right 3.518488e-04	k: 1214	n:3650000
FNBP4   3650000 perm   5353 sec   (682 perm/sec)   p_kst 3.326027e-04   p_cons 9.464745e-01   p_joint 3.326027e-04

Joint ci ratio: 1.123027e-01	ci left: 3.140951e-04	ci right 3.517301e-04	k: 1217	n:3660000
Cons ci ratio: 4.872607e-04	ci left: 9.462460e-01	ci right 9.467074e-01	k: 3464106	n:3660000
KS ci ratio: 1.123027e-01	ci left: 3.140951e-04	ci right 3.517301e-04	k: 1217	n:3660000
FNBP4   3660000 perm   5381 sec   (680 perm/sec)   p_kst 3.325137e-04   p_cons 9.464770e-01   p_joint 3.325137e-04

Joint ci ratio: 1.119813e-01	ci left: 3.150931e-04	ci right 3.527326e-04	k: 1224	n:3670000
Cons ci ratio: 4.865791e-04	ci left: 9.462499e-01	ci right 9.467107e-01	k: 3473584	n:3670000
KS ci ratio: 1.119813e-01	ci left: 3.150931e-04	ci right 3.527326e-04	k: 1224	n:3670000
FNBP4   3670000 perm   5408 sec   (679 perm/sec)   p_kst 3.335150e-04   p_cons 9.464807e-01   p_joint 3.335150e-04

Joint ci ratio: 1.118900e-01	ci left: 3.147652e-04	ci right 3.523327e-04	k: 1226	n:3680000
Cons ci ratio: 4.859368e-04	ci left: 9.462462e-01	ci right 9.467064e-01	k: 3483034	n:3680000
KS ci ratio: 1.118900e-01	ci left: 3.147652e-04	ci right 3.523327e-04	k: 1226	n:3680000
FNBP4   3680000 perm   5436 sec   (677 perm/sec)   p_kst 3.331522e-04   p_cons 9.464766e-01   p_joint 3.331522e-04

Joint ci ratio: 1.118445e-01	ci left: 3.141755e-04	ci right 3.516565e-04	k: 1227	n:3690000
Cons ci ratio: 4.852646e-04	ci left: 9.462493e-01	ci right 9.467088e-01	k: 3492509	n:3690000
KS ci ratio: 1.118445e-01	ci left: 3.141755e-04	ci right 3.516565e-04	k: 1227	n:3690000
FNBP4   3690000 perm   5464 sec   (675 perm/sec)   p_kst 3.325203e-04   p_cons 9.464794e-01   p_joint 3.325203e-04

Joint ci ratio: 1.116174e-01	ci left: 3.146400e-04	ci right 3.520952e-04	k: 1232	n:3700000
Cons ci ratio: 4.845862e-04	ci left: 9.462542e-01	ci right 9.467132e-01	k: 3501991	n:3700000
KS ci ratio: 1.116174e-01	ci left: 3.146400e-04	ci right 3.520952e-04	k: 1232	n:3700000
FNBP4   3700000 perm   5492 sec   (674 perm/sec)   p_kst 3.329730e-04   p_cons 9.464841e-01   p_joint 3.329730e-04

Joint ci ratio: 1.116175e-01	ci left: 3.137919e-04	ci right 3.511461e-04	k: 1232	n:3710000
Cons ci ratio: 4.839736e-04	ci left: 9.462460e-01	ci right 9.467043e-01	k: 3511424	n:3710000
KS ci ratio: 1.116175e-01	ci left: 3.137919e-04	ci right 3.511461e-04	k: 1232	n:3710000
FNBP4   3710000 perm   5520 sec   (672 perm/sec)   p_kst 3.320755e-04   p_cons 9.464755e-01   p_joint 3.320755e-04

Joint ci ratio: 1.114820e-01	ci left: 3.137323e-04	ci right 3.510311e-04	k: 1235	n:3720000
Cons ci ratio: 4.832942e-04	ci left: 9.462523e-01	ci right 9.467099e-01	k: 3520911	n:3720000
KS ci ratio: 1.114820e-01	ci left: 3.137323e-04	ci right 3.510311e-04	k: 1235	n:3720000
FNBP4   3720000 perm   5549 sec   (670 perm/sec)   p_kst 3.319892e-04   p_cons 9.464815e-01   p_joint 3.319892e-04

Joint ci ratio: 1.113469e-01	ci left: 3.136731e-04	ci right 3.509167e-04	k: 1238	n:3730000
Cons ci ratio: 4.826533e-04	ci left: 9.462510e-01	ci right 9.467081e-01	k: 3530370	n:3730000
KS ci ratio: 1.113469e-01	ci left: 3.136731e-04	ci right 3.509167e-04	k: 1238	n:3730000
FNBP4   3730000 perm   5577 sec   (669 perm/sec)   p_kst 3.319035e-04   p_cons 9.464799e-01   p_joint 3.319035e-04

Joint ci ratio: 1.111229e-01	ci left: 3.141341e-04	ci right 3.513525e-04	k: 1243	n:3740000
Cons ci ratio: 4.820264e-04	ci left: 9.462473e-01	ci right 9.467038e-01	k: 3539820	n:3740000
KS ci ratio: 1.111229e-01	ci left: 3.141341e-04	ci right 3.513525e-04	k: 1243	n:3740000
FNBP4   3740000 perm   5605 sec   (667 perm/sec)   p_kst 3.323529e-04   p_cons 9.464759e-01   p_joint 3.323529e-04

Joint ci ratio: 1.109892e-01	ci left: 3.140742e-04	ci right 3.512378e-04	k: 1246	n:3750000
Cons ci ratio: 4.813513e-04	ci left: 9.462544e-01	ci right 9.467102e-01	k: 3549310	n:3750000
KS ci ratio: 1.109892e-01	ci left: 3.140742e-04	ci right 3.512378e-04	k: 1246	n:3750000
FNBP4   3750000 perm   5634 sec   (666 perm/sec)   p_kst 3.322667e-04   p_cons 9.464827e-01   p_joint 3.322667e-04

Joint ci ratio: 1.109447e-01	ci left: 3.134975e-04	ci right 3.505770e-04	k: 1247	n:3760000
Cons ci ratio: 4.807257e-04	ci left: 9.462516e-01	ci right 9.467068e-01	k: 3558763	n:3760000
KS ci ratio: 1.109447e-01	ci left: 3.134975e-04	ci right 3.505770e-04	k: 1247	n:3760000
FNBP4   3760000 perm   5662 sec   (664 perm/sec)   p_kst 3.316489e-04   p_cons 9.464795e-01   p_joint 3.316489e-04

Joint ci ratio: 1.107673e-01	ci left: 3.136975e-04	ci right 3.507375e-04	k: 1251	n:3770000
Cons ci ratio: 4.800900e-04	ci left: 9.462514e-01	ci right 9.467060e-01	k: 3568226	n:3770000
KS ci ratio: 1.107673e-01	ci left: 3.136975e-04	ci right 3.507375e-04	k: 1251	n:3770000
FNBP4   3770000 perm   5691 sec   (662 perm/sec)   p_kst 3.318302e-04   p_cons 9.464790e-01   p_joint 3.318302e-04

Joint ci ratio: 1.107674e-01	ci left: 3.128676e-04	ci right 3.498096e-04	k: 1251	n:3780000
Cons ci ratio: 4.794968e-04	ci left: 9.462427e-01	ci right 9.466968e-01	k: 3577657	n:3780000
KS ci ratio: 1.107674e-01	ci left: 3.128676e-04	ci right 3.498096e-04	k: 1251	n:3780000
FNBP4   3780000 perm   5719 sec   (661 perm/sec)   p_kst 3.309524e-04   p_cons 9.464701e-01   p_joint 3.309524e-04

Joint ci ratio: 1.105468e-01	ci left: 3.133249e-04	ci right 3.502424e-04	k: 1256	n:3790000
Cons ci ratio: 4.788510e-04	ci left: 9.462457e-01	ci right 9.466992e-01	k: 3587132	n:3790000
KS ci ratio: 1.105468e-01	ci left: 3.133249e-04	ci right 3.502424e-04	k: 1256	n:3790000
FNBP4   3790000 perm   5748 sec   (659 perm/sec)   p_kst 3.313984e-04   p_cons 9.464728e-01   p_joint 3.313984e-04

Joint ci ratio: 1.104590e-01	ci left: 3.130121e-04	ci right 3.498616e-04	k: 1258	n:3800000
Cons ci ratio: 4.782264e-04	ci left: 9.462448e-01	ci right 9.466977e-01	k: 3596592	n:3800000
KS ci ratio: 1.104590e-01	ci left: 3.130121e-04	ci right 3.498616e-04	k: 1258	n:3800000
FNBP4   3800000 perm   5776 sec   (658 perm/sec)   p_kst 3.310526e-04   p_cons 9.464716e-01   p_joint 3.310526e-04

Joint ci ratio: 1.104591e-01	ci left: 3.121905e-04	ci right 3.489433e-04	k: 1258	n:3810000
Cons ci ratio: 4.775609e-04	ci left: 9.462531e-01	ci right 9.467053e-01	k: 3606087	n:3810000
KS ci ratio: 1.104591e-01	ci left: 3.121905e-04	ci right 3.489433e-04	k: 1258	n:3810000
FNBP4   3810000 perm   5805 sec   (656 perm/sec)   p_kst 3.301837e-04   p_cons 9.464795e-01   p_joint 3.301837e-04

Joint ci ratio: 1.101968e-01	ci left: 3.129006e-04	ci right 3.496438e-04	k: 1264	n:3820000
Cons ci ratio: 4.769734e-04	ci left: 9.462453e-01	ci right 9.466970e-01	k: 3615521	n:3820000
KS ci ratio: 1.101968e-01	ci left: 3.129006e-04	ci right 3.496438e-04	k: 1264	n:3820000
FNBP4   3820000 perm   5834 sec   (655 perm/sec)   p_kst 3.308901e-04   p_cons 9.464715e-01   p_joint 3.308901e-04

Joint ci ratio: 1.101098e-01	ci left: 3.125915e-04	ci right 3.492675e-04	k: 1266	n:3830000
Cons ci ratio: 4.763291e-04	ci left: 9.462501e-01	ci right 9.467012e-01	k: 3625003	n:3830000
KS ci ratio: 1.101098e-01	ci left: 3.125915e-04	ci right 3.492675e-04	k: 1266	n:3830000
FNBP4   3830000 perm   5863 sec   (653 perm/sec)   p_kst 3.305483e-04   p_cons 9.464760e-01   p_joint 3.305483e-04

Joint ci ratio: 1.100664e-01	ci left: 3.120307e-04	ci right 3.486255e-04	k: 1267	n:3840000
Cons ci ratio: 4.757167e-04	ci left: 9.462486e-01	ci right 9.466991e-01	k: 3634461	n:3840000
KS ci ratio: 1.100664e-01	ci left: 3.120307e-04	ci right 3.486255e-04	k: 1267	n:3840000
FNBP4   3840000 perm   5892 sec   (652 perm/sec)   p_kst 3.299479e-04   p_cons 9.464742e-01   p_joint 3.299479e-04

Joint ci ratio: 1.099364e-01	ci left: 3.119780e-04	ci right 3.485207e-04	k: 1270	n:3850000
Cons ci ratio: 4.751091e-04	ci left: 9.462466e-01	ci right 9.466966e-01	k: 3643917	n:3850000
KS ci ratio: 1.099364e-01	ci left: 3.119780e-04	ci right 3.485207e-04	k: 1270	n:3850000
FNBP4   3850000 perm   5921 sec   (650 perm/sec)   p_kst 3.298701e-04   p_cons 9.464719e-01   p_joint 3.298701e-04

Joint ci ratio: 1.098069e-01	ci left: 3.119256e-04	ci right 3.484163e-04	k: 1273	n:3860000
Cons ci ratio: 4.745536e-04	ci left: 9.462340e-01	ci right 9.466834e-01	k: 3653332	n:3860000
KS ci ratio: 1.098069e-01	ci left: 3.119256e-04	ci right 3.484163e-04	k: 1273	n:3860000
FNBP4   3860000 perm   5950 sec   (649 perm/sec)   p_kst 3.297927e-04   p_cons 9.464591e-01   p_joint 3.297927e-04

Joint ci ratio: 1.097639e-01	ci left: 3.113709e-04	ci right 3.477815e-04	k: 1274	n:3870000
Cons ci ratio: 4.739614e-04	ci left: 9.462298e-01	ci right 9.466786e-01	k: 3662779	n:3870000
KS ci ratio: 1.097639e-01	ci left: 3.113709e-04	ci right 3.477815e-04	k: 1274	n:3870000
FNBP4   3870000 perm   5979 sec   (647 perm/sec)   p_kst 3.291990e-04   p_cons 9.464545e-01   p_joint 3.291990e-04

Joint ci ratio: 1.096779e-01	ci left: 3.110697e-04	ci right 3.474148e-04	k: 1276	n:3880000
Cons ci ratio: 4.733171e-04	ci left: 9.462372e-01	ci right 9.466854e-01	k: 3672271	n:3880000
KS ci ratio: 1.096779e-01	ci left: 3.110697e-04	ci right 3.474148e-04	k: 1276	n:3880000
FNBP4   3880000 perm   6009 sec   (646 perm/sec)   p_kst 3.288660e-04   p_cons 9.464616e-01   p_joint 3.288660e-04

Joint ci ratio: 1.095921e-01	ci left: 3.107701e-04	ci right 3.470499e-04	k: 1278	n:3890000
Cons ci ratio: 4.726779e-04	ci left: 9.462440e-01	ci right 9.466916e-01	k: 3681761	n:3890000
KS ci ratio: 1.095921e-01	ci left: 3.107701e-04	ci right 3.470499e-04	k: 1278	n:3890000
FNBP4   3890000 perm   6038 sec   (644 perm/sec)   p_kst 3.285347e-04   p_cons 9.464681e-01   p_joint 3.285347e-04

Joint ci ratio: 1.094211e-01	ci left: 3.109708e-04	ci right 3.472138e-04	k: 1282	n:3900000
Cons ci ratio: 4.720198e-04	ci left: 9.462554e-01	ci right 9.467024e-01	k: 3691269	n:3900000
KS ci ratio: 1.094211e-01	ci left: 3.109708e-04	ci right 3.472138e-04	k: 1282	n:3900000
FNBP4   3900000 perm   6067 sec   (643 perm/sec)   p_kst 3.287179e-04   p_cons 9.464792e-01   p_joint 3.287179e-04

Joint ci ratio: 1.091238e-01	ci left: 3.119168e-04	ci right 3.481649e-04	k: 1289	n:3910000
Cons ci ratio: 4.714013e-04	ci left: 9.462588e-01	ci right 9.467052e-01	k: 3700746	n:3910000
KS ci ratio: 1.091238e-01	ci left: 3.119168e-04	ci right 3.481649e-04	k: 1289	n:3910000
FNBP4   3910000 perm   6096 sec   (641 perm/sec)   p_kst 3.296675e-04   p_cons 9.464824e-01   p_joint 3.296675e-04

Joint ci ratio: 1.089550e-01	ci left: 3.121137e-04	ci right 3.483250e-04	k: 1293	n:3920000
Cons ci ratio: 4.707709e-04	ci left: 9.462653e-01	ci right 9.467111e-01	k: 3710235	n:3920000
KS ci ratio: 1.089550e-01	ci left: 3.121137e-04	ci right 3.483250e-04	k: 1293	n:3920000
FNBP4   3920000 perm   6125 sec   (640 perm/sec)   p_kst 3.298469e-04   p_cons 9.464885e-01   p_joint 3.298469e-04

Joint ci ratio: 1.088289e-01	ci left: 3.120621e-04	ci right 3.482228e-04	k: 1296	n:3930000
Cons ci ratio: 4.701585e-04	ci left: 9.462684e-01	ci right 9.467136e-01	k: 3719711	n:3930000
KS ci ratio: 1.088289e-01	ci left: 3.120621e-04	ci right 3.482228e-04	k: 1296	n:3930000
FNBP4   3930000 perm   6154 sec   (639 perm/sec)   p_kst 3.297710e-04   p_cons 9.464913e-01   p_joint 3.297710e-04

Joint ci ratio: 1.087870e-01	ci left: 3.115169e-04	ci right 3.475997e-04	k: 1297	n:3940000
Cons ci ratio: 4.695778e-04	ci left: 9.462651e-01	ci right 9.467098e-01	k: 3729162	n:3940000
KS ci ratio: 1.087870e-01	ci left: 3.115169e-04	ci right 3.475997e-04	k: 1297	n:3940000
FNBP4   3940000 perm   6185 sec   (637 perm/sec)   p_kst 3.291878e-04   p_cons 9.464878e-01   p_joint 3.291878e-04

Joint ci ratio: 1.086615e-01	ci left: 3.114671e-04	ci right 3.474998e-04	k: 1300	n:3950000
Cons ci ratio: 4.689454e-04	ci left: 9.462736e-01	ci right 9.467177e-01	k: 3738659	n:3950000
KS ci ratio: 1.086615e-01	ci left: 3.114671e-04	ci right 3.474998e-04	k: 1300	n:3950000
FNBP4   3950000 perm   6215 sec   (636 perm/sec)   p_kst 3.291139e-04   p_cons 9.464959e-01   p_joint 3.291139e-04

Joint ci ratio: 1.084118e-01	ci left: 3.121546e-04	ci right 3.481786e-04	k: 1306	n:3960000
Cons ci ratio: 4.683587e-04	ci left: 9.462726e-01	ci right 9.467161e-01	k: 3748119	n:3960000
KS ci ratio: 1.084118e-01	ci left: 3.121546e-04	ci right 3.481786e-04	k: 1306	n:3960000
FNBP4   3960000 perm   6245 sec   (634 perm/sec)   p_kst 3.297980e-04   p_cons 9.464947e-01   p_joint 3.297980e-04

Joint ci ratio: 1.082463e-01	ci left: 3.123486e-04	ci right 3.483364e-04	k: 1310	n:3970000
Cons ci ratio: 4.677882e-04	ci left: 9.462686e-01	ci right 9.467116e-01	k: 3757567	n:3970000
KS ci ratio: 1.082463e-01	ci left: 3.123486e-04	ci right 3.483364e-04	k: 1310	n:3970000
FNBP4   3970000 perm   6275 sec   (633 perm/sec)   p_kst 3.299748e-04   p_cons 9.464904e-01   p_joint 3.299748e-04

Joint ci ratio: 1.080815e-01	ci left: 3.125416e-04	ci right 3.484934e-04	k: 1314	n:3980000
Cons ci ratio: 4.672047e-04	ci left: 9.462679e-01	ci right 9.467103e-01	k: 3767028	n:3980000
KS ci ratio: 1.080815e-01	ci left: 3.125416e-04	ci right 3.484934e-04	k: 1314	n:3980000
FNBP4   3980000 perm   6305 sec   (631 perm/sec)   p_kst 3.301508e-04   p_cons 9.464894e-01   p_joint 3.301508e-04

Joint ci ratio: 1.079584e-01	ci left: 3.124899e-04	ci right 3.483922e-04	k: 1317	n:3990000
Cons ci ratio: 4.666291e-04	ci left: 9.462659e-01	ci right 9.467078e-01	k: 3776484	n:3990000
KS ci ratio: 1.079584e-01	ci left: 3.124899e-04	ci right 3.483922e-04	k: 1317	n:3990000
FNBP4   3990000 perm   6335 sec   (630 perm/sec)   p_kst 3.300752e-04   p_cons 9.464872e-01   p_joint 3.300752e-04

Joint ci ratio: 1.078358e-01	ci left: 3.124384e-04	ci right 3.482914e-04	k: 1320	n:4000000
Cons ci ratio: 4.660246e-04	ci left: 9.462708e-01	ci right 9.467121e-01	k: 3785967	n:4000000
KS ci ratio: 1.078358e-01	ci left: 3.124384e-04	ci right 3.482914e-04	k: 1320	n:4000000
FNBP4   4000000 perm   6365 sec   (628 perm/sec)   p_kst 3.300000e-04   p_cons 9.464917e-01   p_joint 3.300000e-04

Joint ci ratio: 1.077135e-01	ci left: 3.123872e-04	ci right 3.481911e-04	k: 1323	n:4010000
Cons ci ratio: 4.654430e-04	ci left: 9.462711e-01	ci right 9.467118e-01	k: 3795432	n:4010000
KS ci ratio: 1.077135e-01	ci left: 3.123872e-04	ci right 3.481911e-04	k: 1323	n:4010000
FNBP4   4010000 perm   6396 sec   (627 perm/sec)   p_kst 3.299252e-04   p_cons 9.464918e-01   p_joint 3.299252e-04

Joint ci ratio: 1.075107e-01	ci left: 3.128204e-04	ci right 3.486022e-04	k: 1328	n:4020000
Cons ci ratio: 4.648728e-04	ci left: 9.462694e-01	ci right 9.467096e-01	k: 3804889	n:4020000
KS ci ratio: 1.075107e-01	ci left: 3.128204e-04	ci right 3.486022e-04	k: 1328	n:4020000
FNBP4   4020000 perm   6426 sec   (626 perm/sec)   p_kst 3.303483e-04   p_cons 9.464898e-01   p_joint 3.303483e-04

Joint ci ratio: 1.074299e-01	ci left: 3.125272e-04	ci right 3.482468e-04	k: 1330	n:4030000
Cons ci ratio: 4.642922e-04	ci left: 9.462704e-01	ci right 9.467101e-01	k: 3814357	n:4030000
KS ci ratio: 1.074299e-01	ci left: 3.125272e-04	ci right 3.482468e-04	k: 1330	n:4030000
FNBP4   4030000 perm   6456 sec   (624 perm/sec)   p_kst 3.300248e-04   p_cons 9.464906e-01   p_joint 3.300248e-04

Joint ci ratio: 1.071886e-01	ci left: 3.131989e-04	ci right 3.489098e-04	k: 1336	n:4040000
Cons ci ratio: 4.637477e-04	ci left: 9.462640e-01	ci right 9.467032e-01	k: 3823795	n:4040000
KS ci ratio: 1.071886e-01	ci left: 3.131989e-04	ci right 3.489098e-04	k: 1336	n:4040000
FNBP4   4040000 perm   6487 sec   (623 perm/sec)   p_kst 3.306931e-04   p_cons 9.464839e-01   p_joint 3.306931e-04

Joint ci ratio: 1.071085e-01	ci left: 3.129061e-04	ci right 3.485554e-04	k: 1338	n:4050000
Cons ci ratio: 4.631904e-04	ci left: 9.462609e-01	ci right 9.466995e-01	k: 3833246	n:4050000
KS ci ratio: 1.071085e-01	ci left: 3.129061e-04	ci right 3.485554e-04	k: 1338	n:4050000
FNBP4   4050000 perm   6518 sec   (621 perm/sec)   p_kst 3.303704e-04   p_cons 9.464805e-01   p_joint 3.303704e-04

Joint ci ratio: 1.069091e-01	ci left: 3.133340e-04	ci right 3.489613e-04	k: 1343	n:4060000
Cons ci ratio: 4.626329e-04	ci left: 9.462582e-01	ci right 9.466963e-01	k: 3842699	n:4060000
KS ci ratio: 1.069091e-01	ci left: 3.133340e-04	ci right 3.489613e-04	k: 1343	n:4060000
FNBP4   4060000 perm   6548 sec   (620 perm/sec)   p_kst 3.307882e-04   p_cons 9.464776e-01   p_joint 3.307882e-04

Joint ci ratio: 1.067503e-01	ci left: 3.135207e-04	ci right 3.491130e-04	k: 1347	n:4070000
Cons ci ratio: 4.620146e-04	ci left: 9.462694e-01	ci right 9.467069e-01	k: 3852208	n:4070000
KS ci ratio: 1.067503e-01	ci left: 3.135207e-04	ci right 3.491130e-04	k: 1347	n:4070000
FNBP4   4070000 perm   6579 sec   (619 perm/sec)   p_kst 3.309582e-04   p_cons 9.464885e-01   p_joint 3.309582e-04

Joint ci ratio: 1.067108e-01	ci left: 3.129908e-04	ci right 3.485090e-04	k: 1348	n:4080000
Cons ci ratio: 4.614882e-04	ci left: 9.462608e-01	ci right 9.466979e-01	k: 3861637	n:4080000
KS ci ratio: 1.067108e-01	ci left: 3.129908e-04	ci right 3.485090e-04	k: 1348	n:4080000
FNBP4   4080000 perm   6609 sec   (617 perm/sec)   p_kst 3.303922e-04   p_cons 9.464797e-01   p_joint 3.303922e-04

Joint ci ratio: 1.066713e-01	ci left: 3.124635e-04	ci right 3.479079e-04	k: 1349	n:4090000
Cons ci ratio: 4.609279e-04	ci left: 9.462602e-01	ci right 9.466967e-01	k: 3871098	n:4090000
KS ci ratio: 1.066713e-01	ci left: 3.124635e-04	ci right 3.479079e-04	k: 1349	n:4090000
FNBP4   4090000 perm   6641 sec   (616 perm/sec)   p_kst 3.298289e-04   p_cons 9.464787e-01   p_joint 3.298289e-04

Joint ci ratio: 1.065529e-01	ci left: 3.124136e-04	ci right 3.478105e-04	k: 1352	n:4100000
Cons ci ratio: 4.603752e-04	ci left: 9.462583e-01	ci right 9.466943e-01	k: 3880554	n:4100000
KS ci ratio: 1.065529e-01	ci left: 3.124136e-04	ci right 3.478105e-04	k: 1352	n:4100000
FNBP4   4100000 perm   6671 sec   (615 perm/sec)   p_kst 3.297561e-04   p_cons 9.464766e-01   p_joint 3.297561e-04

Joint ci ratio: 1.064350e-01	ci left: 3.123639e-04	ci right 3.477136e-04	k: 1355	n:4110000
Cons ci ratio: 4.597880e-04	ci left: 9.462645e-01	ci right 9.466999e-01	k: 3890043	n:4110000
KS ci ratio: 1.064350e-01	ci left: 3.123639e-04	ci right 3.477136e-04	k: 1355	n:4110000
FNBP4   4110000 perm   6703 sec   (613 perm/sec)   p_kst 3.296837e-04   p_cons 9.464825e-01   p_joint 3.296837e-04

Joint ci ratio: 1.063175e-01	ci left: 3.123146e-04	ci right 3.476172e-04	k: 1358	n:4120000
Cons ci ratio: 4.592636e-04	ci left: 9.462572e-01	ci right 9.466921e-01	k: 3899477	n:4120000
KS ci ratio: 1.063175e-01	ci left: 3.123146e-04	ci right 3.476172e-04	k: 1358	n:4120000
FNBP4   4120000 perm   6734 sec   (612 perm/sec)   p_kst 3.296117e-04   p_cons 9.464750e-01   p_joint 3.296117e-04

Joint ci ratio: 1.062784e-01	ci left: 3.117940e-04	ci right 3.470241e-04	k: 1359	n:4130000
Cons ci ratio: 4.587431e-04	ci left: 9.462495e-01	ci right 9.466840e-01	k: 3908909	n:4130000
KS ci ratio: 1.062784e-01	ci left: 3.117940e-04	ci right 3.470241e-04	k: 1359	n:4130000
FNBP4   4130000 perm   6765 sec   (610 perm/sec)   p_kst 3.290557e-04   p_cons 9.464671e-01   p_joint 3.290557e-04

Joint ci ratio: 1.062004e-01	ci left: 3.115112e-04	ci right 3.466818e-04	k: 1361	n:4140000
Cons ci ratio: 4.581600e-04	ci left: 9.462562e-01	ci right 9.466901e-01	k: 3918400	n:4140000
KS ci ratio: 1.062004e-01	ci left: 3.115112e-04	ci right 3.466818e-04	k: 1361	n:4140000
FNBP4   4140000 perm   6797 sec   (609 perm/sec)   p_kst 3.287440e-04   p_cons 9.464734e-01   p_joint 3.287440e-04

Joint ci ratio: 1.061225e-01	ci left: 3.112297e-04	ci right 3.463411e-04	k: 1363	n:4150000
Cons ci ratio: 4.575954e-04	ci left: 9.462592e-01	ci right 9.466925e-01	k: 3927876	n:4150000
KS ci ratio: 1.061225e-01	ci left: 3.112297e-04	ci right 3.463411e-04	k: 1363	n:4150000
FNBP4   4150000 perm   6828 sec   (608 perm/sec)   p_kst 3.284337e-04   p_cons 9.464761e-01   p_joint 3.284337e-04

Joint ci ratio: 1.060448e-01	ci left: 3.109495e-04	ci right 3.460021e-04	k: 1365	n:4160000
Cons ci ratio: 4.570416e-04	ci left: 9.462602e-01	ci right 9.466930e-01	k: 3937344	n:4160000
KS ci ratio: 1.060448e-01	ci left: 3.109495e-04	ci right 3.460021e-04	k: 1365	n:4160000
FNBP4   4160000 perm   6859 sec   (607 perm/sec)   p_kst 3.281250e-04   p_cons 9.464769e-01   p_joint 3.281250e-04

Joint ci ratio: 1.060060e-01	ci left: 3.104373e-04	ci right 3.454185e-04	k: 1366	n:4170000
Cons ci ratio: 4.564692e-04	ci left: 9.462658e-01	ci right 9.466981e-01	k: 3946831	n:4170000
KS ci ratio: 1.060060e-01	ci left: 3.104373e-04	ci right 3.454185e-04	k: 1366	n:4170000
FNBP4   4170000 perm   6890 sec   (605 perm/sec)   p_kst 3.275779e-04   p_cons 9.464823e-01   p_joint 3.275779e-04

Joint ci ratio: 1.058127e-01	ci left: 3.108591e-04	ci right 3.458200e-04	k: 1371	n:4180000
Cons ci ratio: 4.558720e-04	ci left: 9.462774e-01	ci right 9.467091e-01	k: 3956343	n:4180000
KS ci ratio: 1.058127e-01	ci left: 3.108591e-04	ci right 3.458200e-04	k: 1371	n:4180000
FNBP4   4180000 perm   6922 sec   (604 perm/sec)   p_kst 3.279904e-04   p_cons 9.464935e-01   p_joint 3.279904e-04

Joint ci ratio: 1.058127e-01	ci left: 3.101172e-04	ci right 3.449947e-04	k: 1371	n:4190000
Cons ci ratio: 4.553448e-04	ci left: 9.462738e-01	ci right 9.467050e-01	k: 3965792	n:4190000
KS ci ratio: 1.058127e-01	ci left: 3.101172e-04	ci right 3.449947e-04	k: 1371	n:4190000
FNBP4   4190000 perm   6953 sec   (603 perm/sec)   p_kst 3.272076e-04   p_cons 9.464897e-01   p_joint 3.272076e-04

Joint ci ratio: 1.056204e-01	ci left: 3.105378e-04	ci right 3.453952e-04	k: 1376	n:4200000
Cons ci ratio: 4.547905e-04	ci left: 9.462767e-01	ci right 9.467074e-01	k: 3975268	n:4200000
KS ci ratio: 1.056204e-01	ci left: 3.105378e-04	ci right 3.453952e-04	k: 1376	n:4200000
FNBP4   4200000 perm   6985 sec   (601 perm/sec)   p_kst 3.276190e-04   p_cons 9.464924e-01   p_joint 3.276190e-04

Joint ci ratio: 1.055821e-01	ci left: 3.100315e-04	ci right 3.448186e-04	k: 1377	n:4210000
Cons ci ratio: 4.542394e-04	ci left: 9.462794e-01	ci right 9.467095e-01	k: 3984743	n:4210000
KS ci ratio: 1.055821e-01	ci left: 3.100315e-04	ci right 3.448186e-04	k: 1377	n:4210000
FNBP4   4210000 perm   7017 sec   (600 perm/sec)   p_kst 3.270784e-04   p_cons 9.464948e-01   p_joint 3.270784e-04

Joint ci ratio: 1.054292e-01	ci left: 3.102196e-04	ci right 3.449743e-04	k: 1381	n:4220000
Cons ci ratio: 4.537199e-04	ci left: 9.462754e-01	ci right 9.467050e-01	k: 3994190	n:4220000
KS ci ratio: 1.054292e-01	ci left: 3.102196e-04	ci right 3.449743e-04	k: 1381	n:4220000
FNBP4   4220000 perm   7048 sec   (599 perm/sec)   p_kst 3.272512e-04   p_cons 9.464905e-01   p_joint 3.272512e-04

Joint ci ratio: 1.052769e-01	ci left: 3.104070e-04	ci right 3.451293e-04	k: 1385	n:4230000
Cons ci ratio: 4.531863e-04	ci left: 9.462749e-01	ci right 9.467041e-01	k: 4003652	n:4230000
KS ci ratio: 1.052769e-01	ci left: 3.104070e-04	ci right 3.451293e-04	k: 1385	n:4230000
FNBP4   4230000 perm   7080 sec   (597 perm/sec)   p_kst 3.274232e-04   p_cons 9.464898e-01   p_joint 3.274232e-04

Joint ci ratio: 1.052011e-01	ci left: 3.101342e-04	ci right 3.447995e-04	k: 1387	n:4240000
Cons ci ratio: 4.526515e-04	ci left: 9.462752e-01	ci right 9.467039e-01	k: 4013117	n:4240000
KS ci ratio: 1.052011e-01	ci left: 3.101342e-04	ci right 3.447995e-04	k: 1387	n:4240000
FNBP4   4240000 perm   7112 sec   (596 perm/sec)   p_kst 3.271226e-04   p_cons 9.464899e-01   p_joint 3.271226e-04

Joint ci ratio: 1.050498e-01	ci left: 3.103209e-04	ci right 3.449541e-04	k: 1391	n:4250000
Cons ci ratio: 4.521364e-04	ci left: 9.462715e-01	ci right 9.466997e-01	k: 4022565	n:4250000
KS ci ratio: 1.050498e-01	ci left: 3.103209e-04	ci right 3.449541e-04	k: 1391	n:4250000
FNBP4   4250000 perm   7144 sec   (595 perm/sec)   p_kst 3.272941e-04   p_cons 9.464859e-01   p_joint 3.272941e-04

Joint ci ratio: 1.049368e-01	ci left: 3.102782e-04	ci right 3.448670e-04	k: 1394	n:4260000
Cons ci ratio: 4.516199e-04	ci left: 9.462685e-01	ci right 9.466962e-01	k: 4032016	n:4260000
KS ci ratio: 1.049368e-01	ci left: 3.102782e-04	ci right 3.448670e-04	k: 1394	n:4260000
FNBP4   4260000 perm   7177 sec   (594 perm/sec)   p_kst 3.272300e-04   p_cons 9.464826e-01   p_joint 3.272300e-04

Joint ci ratio: 1.047492e-01	ci left: 3.106918e-04	ci right 3.452610e-04	k: 1399	n:4270000
Cons ci ratio: 4.510802e-04	ci left: 9.462711e-01	ci right 9.466983e-01	k: 4041491	n:4270000
KS ci ratio: 1.047492e-01	ci left: 3.106918e-04	ci right 3.452610e-04	k: 1399	n:4270000
FNBP4   4270000 perm   7209 sec   (592 perm/sec)   p_kst 3.276347e-04   p_cons 9.464850e-01   p_joint 3.276347e-04

Joint ci ratio: 1.046372e-01	ci left: 3.106484e-04	ci right 3.451736e-04	k: 1402	n:4280000
Cons ci ratio: 4.505527e-04	ci left: 9.462714e-01	ci right 9.466981e-01	k: 4050956	n:4280000
KS ci ratio: 1.046372e-01	ci left: 3.106484e-04	ci right 3.451736e-04	k: 1402	n:4280000
FNBP4   4280000 perm   7241 sec   (591 perm/sec)   p_kst 3.275701e-04   p_cons 9.464850e-01   p_joint 3.275701e-04

Joint ci ratio: 1.046372e-01	ci left: 3.099243e-04	ci right 3.443690e-04	k: 1402	n:4290000
Cons ci ratio: 4.500375e-04	ci left: 9.462694e-01	ci right 9.466955e-01	k: 4060411	n:4290000
KS ci ratio: 1.046372e-01	ci left: 3.099243e-04	ci right 3.443690e-04	k: 1402	n:4290000
FNBP4   4290000 perm   7273 sec   (590 perm/sec)   p_kst 3.268065e-04   p_cons 9.464828e-01   p_joint 3.268065e-04

Joint ci ratio: 1.044512e-01	ci left: 3.103359e-04	ci right 3.447614e-04	k: 1407	n:4300000
Cons ci ratio: 4.494838e-04	ci left: 9.462764e-01	ci right 9.467021e-01	k: 4069905	n:4300000
KS ci ratio: 1.044512e-01	ci left: 3.103359e-04	ci right 3.447614e-04	k: 1407	n:4300000
FNBP4   4300000 perm   7306 sec   (589 perm/sec)   p_kst 3.272093e-04   p_cons 9.464895e-01   p_joint 3.272093e-04

Joint ci ratio: 1.043771e-01	ci left: 3.100678e-04	ci right 3.444376e-04	k: 1409	n:4310000
Cons ci ratio: 4.489918e-04	ci left: 9.462699e-01	ci right 9.466951e-01	k: 4079341	n:4310000
KS ci ratio: 1.043771e-01	ci left: 3.100678e-04	ci right 3.444376e-04	k: 1409	n:4310000
FNBP4   4310000 perm   7338 sec   (587 perm/sec)   p_kst 3.269142e-04   p_cons 9.464828e-01   p_joint 3.269142e-04

Joint ci ratio: 1.043032e-01	ci left: 3.098010e-04	ci right 3.441153e-04	k: 1411	n:4320000
Cons ci ratio: 4.484614e-04	ci left: 9.462725e-01	ci right 9.466972e-01	k: 4088816	n:4320000
KS ci ratio: 1.043032e-01	ci left: 3.098010e-04	ci right 3.441153e-04	k: 1411	n:4320000
FNBP4   4320000 perm   7371 sec   (586 perm/sec)   p_kst 3.266204e-04   p_cons 9.464852e-01   p_joint 3.266204e-04

Joint ci ratio: 1.042294e-01	ci left: 3.095353e-04	ci right 3.437946e-04	k: 1413	n:4330000
Cons ci ratio: 4.479757e-04	ci left: 9.462654e-01	ci right 9.466896e-01	k: 4098249	n:4330000
KS ci ratio: 1.042294e-01	ci left: 3.095353e-04	ci right 3.437946e-04	k: 1413	n:4330000
FNBP4   4330000 perm   7403 sec   (585 perm/sec)   p_kst 3.263279e-04   p_cons 9.464778e-01   p_joint 3.263279e-04

Joint ci ratio: 1.040456e-01	ci left: 3.099442e-04	ci right 3.441845e-04	k: 1418	n:4340000
Cons ci ratio: 4.474571e-04	ci left: 9.462662e-01	ci right 9.466899e-01	k: 4107716	n:4340000
KS ci ratio: 1.040456e-01	ci left: 3.099442e-04	ci right 3.441845e-04	k: 1418	n:4340000
FNBP4   4340000 perm   7436 sec   (584 perm/sec)   p_kst 3.267281e-04   p_cons 9.464783e-01   p_joint 3.267281e-04

Joint ci ratio: 1.039358e-01	ci left: 3.099034e-04	ci right 3.441008e-04	k: 1421	n:4350000
Cons ci ratio: 4.469808e-04	ci left: 9.462577e-01	ci right 9.466810e-01	k: 4117143	n:4350000
KS ci ratio: 1.039358e-01	ci left: 3.099034e-04	ci right 3.441008e-04	k: 1421	n:4350000
FNBP4   4350000 perm   7469 sec   (582 perm/sec)   p_kst 3.266667e-04   p_cons 9.464697e-01   p_joint 3.266667e-04

Joint ci ratio: 1.038264e-01	ci left: 3.098628e-04	ci right 3.440175e-04	k: 1424	n:4360000
Cons ci ratio: 4.464645e-04	ci left: 9.462587e-01	ci right 9.466815e-01	k: 4126611	n:4360000
KS ci ratio: 1.038264e-01	ci left: 3.098628e-04	ci right 3.440175e-04	k: 1424	n:4360000
FNBP4   4360000 perm   7502 sec   (581 perm/sec)   p_kst 3.266055e-04   p_cons 9.464704e-01   p_joint 3.266055e-04

Joint ci ratio: 1.037172e-01	ci left: 3.098224e-04	ci right 3.439346e-04	k: 1427	n:4370000
Cons ci ratio: 4.459360e-04	ci left: 9.462629e-01	ci right 9.466852e-01	k: 4136093	n:4370000
KS ci ratio: 1.037172e-01	ci left: 3.098224e-04	ci right 3.439346e-04	k: 1427	n:4370000
FNBP4   4370000 perm   7535 sec   (580 perm/sec)   p_kst 3.265446e-04   p_cons 9.464744e-01   p_joint 3.265446e-04

Joint ci ratio: 1.036085e-01	ci left: 3.097822e-04	ci right 3.438521e-04	k: 1430	n:4380000
Cons ci ratio: 4.454404e-04	ci left: 9.462600e-01	ci right 9.466818e-01	k: 4145544	n:4380000
KS ci ratio: 1.036085e-01	ci left: 3.097822e-04	ci right 3.438521e-04	k: 1430	n:4380000
FNBP4   4380000 perm   7567 sec   (579 perm/sec)   p_kst 3.264840e-04   p_cons 9.464712e-01   p_joint 3.264840e-04

Joint ci ratio: 1.035000e-01	ci left: 3.097422e-04	ci right 3.437699e-04	k: 1433	n:4390000
Cons ci ratio: 4.449445e-04	ci left: 9.462576e-01	ci right 9.466789e-01	k: 4154997	n:4390000
KS ci ratio: 1.035000e-01	ci left: 3.097422e-04	ci right 3.437699e-04	k: 1433	n:4390000
FNBP4   4390000 perm   7600 sec   (578 perm/sec)   p_kst 3.264237e-04   p_cons 9.464686e-01   p_joint 3.264237e-04

Joint ci ratio: 1.033200e-01	ci left: 3.101453e-04	ci right 3.441543e-04	k: 1438	n:4400000
Cons ci ratio: 4.444313e-04	ci left: 9.462595e-01	ci right 9.466804e-01	k: 4164469	n:4400000
KS ci ratio: 1.033200e-01	ci left: 3.101453e-04	ci right 3.441543e-04	k: 1438	n:4400000
FNBP4   4400000 perm   7634 sec   (576 perm/sec)   p_kst 3.268182e-04   p_cons 9.464702e-01   p_joint 3.268182e-04

Joint ci ratio: 1.031410e-01	ci left: 3.105465e-04	ci right 3.445370e-04	k: 1443	n:4410000
Cons ci ratio: 4.439338e-04	ci left: 9.462582e-01	ci right 9.466786e-01	k: 4173927	n:4410000
KS ci ratio: 1.031410e-01	ci left: 3.105465e-04	ci right 3.445370e-04	k: 1443	n:4410000
FNBP4   4410000 perm   7667 sec   (575 perm/sec)   p_kst 3.272109e-04   p_cons 9.464687e-01   p_joint 3.272109e-04

Joint ci ratio: 1.031053e-01	ci left: 3.100643e-04	ci right 3.439896e-04	k: 1444	n:4420000
Cons ci ratio: 4.434419e-04	ci left: 9.462560e-01	ci right 9.466760e-01	k: 4183381	n:4420000
KS ci ratio: 1.031053e-01	ci left: 3.100643e-04	ci right 3.439896e-04	k: 1444	n:4420000
FNBP4   4420000 perm   7700 sec   (574 perm/sec)   p_kst 3.266968e-04   p_cons 9.464663e-01   p_joint 3.266968e-04

Joint ci ratio: 1.030697e-01	ci left: 3.095843e-04	ci right 3.434446e-04	k: 1445	n:4430000
Cons ci ratio: 4.429517e-04	ci left: 9.462539e-01	ci right 9.466733e-01	k: 4192835	n:4430000
KS ci ratio: 1.030697e-01	ci left: 3.095843e-04	ci right 3.434446e-04	k: 1445	n:4430000
FNBP4   4430000 perm   7733 sec   (573 perm/sec)   p_kst 3.261851e-04   p_cons 9.464639e-01   p_joint 3.261851e-04

Joint ci ratio: 1.028565e-01	ci left: 3.102036e-04	ci right 3.440572e-04	k: 1451	n:4440000
Cons ci ratio: 4.424542e-04	ci left: 9.462537e-01	ci right 9.466727e-01	k: 4202298	n:4440000
KS ci ratio: 1.028565e-01	ci left: 3.102036e-04	ci right 3.440572e-04	k: 1451	n:4440000
FNBP4   4440000 perm   7766 sec   (572 perm/sec)   p_kst 3.268018e-04   p_cons 9.464635e-01   p_joint 3.268018e-04

Joint ci ratio: 1.028565e-01	ci left: 3.095065e-04	ci right 3.432841e-04	k: 1451	n:4450000
Cons ci ratio: 4.419682e-04	ci left: 9.462513e-01	ci right 9.466699e-01	k: 4211751	n:4450000
KS ci ratio: 1.028565e-01	ci left: 3.095065e-04	ci right 3.432841e-04	k: 1451	n:4450000
FNBP4   4450000 perm   7799 sec   (571 perm/sec)   p_kst 3.260674e-04   p_cons 9.464609e-01   p_joint 3.260674e-04

Joint ci ratio: 1.026799e-01	ci left: 3.099048e-04	ci right 3.436642e-04	k: 1456	n:4460000
Cons ci ratio: 4.415042e-04	ci left: 9.462443e-01	ci right 9.466623e-01	k: 4221183	n:4460000
KS ci ratio: 1.026799e-01	ci left: 3.099048e-04	ci right 3.436642e-04	k: 1456	n:4460000
FNBP4   4460000 perm   7832 sec   (569 perm/sec)   p_kst 3.264574e-04   p_cons 9.464536e-01   p_joint 3.264574e-04

Joint ci ratio: 1.025041e-01	ci left: 3.103014e-04	ci right 3.440427e-04	k: 1461	n:4470000
Cons ci ratio: 4.410145e-04	ci left: 9.462435e-01	ci right 9.466611e-01	k: 4230643	n:4470000
KS ci ratio: 1.025041e-01	ci left: 3.103014e-04	ci right 3.440427e-04	k: 1461	n:4470000
FNBP4   4470000 perm   7866 sec   (568 perm/sec)   p_kst 3.268456e-04   p_cons 9.464526e-01   p_joint 3.268456e-04

Joint ci ratio: 1.023293e-01	ci left: 3.106962e-04	ci right 3.444194e-04	k: 1466	n:4480000
Cons ci ratio: 4.405167e-04	ci left: 9.462449e-01	ci right 9.466621e-01	k: 4240113	n:4480000
KS ci ratio: 1.023293e-01	ci left: 3.106962e-04	ci right 3.444194e-04	k: 1466	n:4480000
FNBP4   4480000 perm   7899 sec   (567 perm/sec)   p_kst 3.272321e-04   p_cons 9.464538e-01   p_joint 3.272321e-04

Joint ci ratio: 1.022596e-01	ci left: 3.104383e-04	ci right 3.441091e-04	k: 1468	n:4490000
Cons ci ratio: 4.400255e-04	ci left: 9.462453e-01	ci right 9.466619e-01	k: 4249578	n:4490000
KS ci ratio: 1.022596e-01	ci left: 3.104383e-04	ci right 3.441091e-04	k: 1468	n:4490000
FNBP4   4490000 perm   7933 sec   (566 perm/sec)   p_kst 3.269488e-04   p_cons 9.464539e-01   p_joint 3.269488e-04

Joint ci ratio: 1.021553e-01	ci left: 3.103981e-04	ci right 3.440281e-04	k: 1471	n:4500000
Cons ci ratio: 4.395059e-04	ci left: 9.462525e-01	ci right 9.466687e-01	k: 4259074	n:4500000
KS ci ratio: 1.021553e-01	ci left: 3.103981e-04	ci right 3.440281e-04	k: 1471	n:4500000
FNBP4   4500000 perm   7967 sec   (565 perm/sec)   p_kst 3.268889e-04   p_cons 9.464609e-01   p_joint 3.268889e-04

Joint ci ratio: 1.020168e-01	ci left: 3.105741e-04	ci right 3.441749e-04	k: 1475	n:4510000
Cons ci ratio: 4.390152e-04	ci left: 9.462535e-01	ci right 9.466692e-01	k: 4268542	n:4510000
KS ci ratio: 1.020168e-01	ci left: 3.105741e-04	ci right 3.441749e-04	k: 1475	n:4510000
FNBP4   4510000 perm   8001 sec   (564 perm/sec)   p_kst 3.270510e-04   p_cons 9.464616e-01   p_joint 3.270510e-04

Joint ci ratio: 1.019133e-01	ci left: 3.105338e-04	ci right 3.440941e-04	k: 1478	n:4520000
Cons ci ratio: 4.385509e-04	ci left: 9.462487e-01	ci right 9.466640e-01	k: 4277984	n:4520000
KS ci ratio: 1.019133e-01	ci left: 3.105338e-04	ci right 3.440941e-04	k: 1478	n:4520000
FNBP4   4520000 perm   8035 sec   (563 perm/sec)   p_kst 3.269912e-04   p_cons 9.464566e-01   p_joint 3.269912e-04

Joint ci ratio: 1.017758e-01	ci left: 3.107088e-04	ci right 3.442400e-04	k: 1482	n:4530000
Cons ci ratio: 4.380624e-04	ci left: 9.462499e-01	ci right 9.466647e-01	k: 4287453	n:4530000
KS ci ratio: 1.017758e-01	ci left: 3.107088e-04	ci right 3.442400e-04	k: 1482	n:4530000
FNBP4   4530000 perm   8069 sec   (561 perm/sec)   p_kst 3.271523e-04   p_cons 9.464576e-01   p_joint 3.271523e-04

Joint ci ratio: 1.017072e-01	ci left: 3.104537e-04	ci right 3.439335e-04	k: 1484	n:4540000
Cons ci ratio: 4.375697e-04	ci left: 9.462524e-01	ci right 9.466668e-01	k: 4296928	n:4540000
KS ci ratio: 1.017072e-01	ci left: 3.104537e-04	ci right 3.439335e-04	k: 1484	n:4540000
FNBP4   4540000 perm   8103 sec   (560 perm/sec)   p_kst 3.268722e-04   p_cons 9.464599e-01   p_joint 3.268722e-04

Joint ci ratio: 1.016730e-01	ci left: 3.099856e-04	ci right 3.434029e-04	k: 1485	n:4550000
Cons ci ratio: 4.371053e-04	ci left: 9.462488e-01	ci right 9.466627e-01	k: 4306375	n:4550000
KS ci ratio: 1.016730e-01	ci left: 3.099856e-04	ci right 3.434029e-04	k: 1485	n:4550000
FNBP4   4550000 perm   8137 sec   (559 perm/sec)   p_kst 3.263736e-04   p_cons 9.464560e-01   p_joint 3.263736e-04

Joint ci ratio: 1.014343e-01	ci left: 3.108019e-04	ci right 3.442239e-04	k: 1492	n:4560000
Cons ci ratio: 4.366376e-04	ci left: 9.462463e-01	ci right 9.466597e-01	k: 4315827	n:4560000
KS ci ratio: 1.014343e-01	ci left: 3.108019e-04	ci right 3.442239e-04	k: 1492	n:4560000
FNBP4   4560000 perm   8171 sec   (558 perm/sec)   p_kst 3.271930e-04   p_cons 9.464533e-01   p_joint 3.271930e-04

Joint ci ratio: 1.014004e-01	ci left: 3.103351e-04	ci right 3.436951e-04	k: 1493	n:4570000
Cons ci ratio: 4.361517e-04	ci left: 9.462484e-01	ci right 9.466614e-01	k: 4325300	n:4570000
KS ci ratio: 1.014004e-01	ci left: 3.103351e-04	ci right 3.436951e-04	k: 1493	n:4570000
FNBP4   4570000 perm   8205 sec   (557 perm/sec)   p_kst 3.266958e-04   p_cons 9.464551e-01   p_joint 3.266958e-04

Joint ci ratio: 1.013665e-01	ci left: 3.098703e-04	ci right 3.431685e-04	k: 1494	n:4580000
Cons ci ratio: 4.356664e-04	ci left: 9.462506e-01	ci right 9.466632e-01	k: 4334774	n:4580000
KS ci ratio: 1.013665e-01	ci left: 3.098703e-04	ci right 3.431685e-04	k: 1494	n:4580000
FNBP4   4580000 perm   8239 sec   (556 perm/sec)   p_kst 3.262009e-04   p_cons 9.464572e-01   p_joint 3.262009e-04

Joint ci ratio: 1.011300e-01	ci left: 3.106816e-04	ci right 3.439845e-04	k: 1501	n:4590000
Cons ci ratio: 4.351696e-04	ci left: 9.462560e-01	ci right 9.466681e-01	k: 4344262	n:4590000
KS ci ratio: 1.011300e-01	ci left: 3.106816e-04	ci right 3.439845e-04	k: 1501	n:4590000
FNBP4   4590000 perm   8273 sec   (555 perm/sec)   p_kst 3.270153e-04   p_cons 9.464623e-01   p_joint 3.270153e-04

Joint ci ratio: 1.010292e-01	ci left: 3.106419e-04	ci right 3.439054e-04	k: 1504	n:4600000
Cons ci ratio: 4.347007e-04	ci left: 9.462552e-01	ci right 9.466668e-01	k: 4353722	n:4600000
KS ci ratio: 1.010292e-01	ci left: 3.106419e-04	ci right 3.439054e-04	k: 1504	n:4600000
FNBP4   4600000 perm   8307 sec   (554 perm/sec)   p_kst 3.269565e-04   p_cons 9.464613e-01   p_joint 3.269565e-04

Joint ci ratio: 1.009621e-01	ci left: 3.103910e-04	ci right 3.436042e-04	k: 1506	n:4610000
Cons ci ratio: 4.342379e-04	ci left: 9.462533e-01	ci right 9.466645e-01	k: 4363177	n:4610000
KS ci ratio: 1.009621e-01	ci left: 3.103910e-04	ci right 3.436042e-04	k: 1506	n:4610000
FNBP4   4610000 perm   8343 sec   (553 perm/sec)   p_kst 3.266811e-04   p_cons 9.464592e-01   p_joint 3.266811e-04

Joint ci ratio: 1.008952e-01	ci left: 3.101411e-04	ci right 3.433043e-04	k: 1508	n:4620000
Cons ci ratio: 4.337571e-04	ci left: 9.462560e-01	ci right 9.466668e-01	k: 4372653	n:4620000
KS ci ratio: 1.008952e-01	ci left: 3.101411e-04	ci right 3.433043e-04	k: 1508	n:4620000
FNBP4   4620000 perm   8377 sec   (551 perm/sec)   p_kst 3.264069e-04   p_cons 9.464617e-01   p_joint 3.264069e-04

Joint ci ratio: 1.008284e-01	ci left: 3.098923e-04	ci right 3.430057e-04	k: 1510	n:4630000
Cons ci ratio: 4.332807e-04	ci left: 9.462581e-01	ci right 9.466684e-01	k: 4382126	n:4630000
KS ci ratio: 1.008284e-01	ci left: 3.098923e-04	ci right 3.430057e-04	k: 1510	n:4630000
FNBP4   4630000 perm   8412 sec   (550 perm/sec)   p_kst 3.261339e-04   p_cons 9.464635e-01   p_joint 3.261339e-04

Joint ci ratio: 1.007618e-01	ci left: 3.096446e-04	ci right 3.427083e-04	k: 1512	n:4640000
Cons ci ratio: 4.328261e-04	ci left: 9.462554e-01	ci right 9.466652e-01	k: 4391577	n:4640000
KS ci ratio: 1.007618e-01	ci left: 3.096446e-04	ci right 3.427083e-04	k: 1512	n:4640000
FNBP4   4640000 perm   8448 sec   (549 perm/sec)   p_kst 3.258621e-04   p_cons 9.464606e-01   p_joint 3.258621e-04

Joint ci ratio: 1.004964e-01	ci left: 3.106558e-04	ci right 3.437350e-04	k: 1520	n:4650000
Cons ci ratio: 4.323711e-04	ci left: 9.462531e-01	ci right 9.466625e-01	k: 4401030	n:4650000
KS ci ratio: 1.004964e-01	ci left: 3.106558e-04	ci right 3.437350e-04	k: 1520	n:4650000
FNBP4   4650000 perm   8483 sec   (548 perm/sec)   p_kst 3.268817e-04   p_cons 9.464581e-01   p_joint 3.268817e-04

Joint ci ratio: 1.003974e-01	ci left: 3.106168e-04	ci right 3.436573e-04	k: 1523	n:4660000
Cons ci ratio: 4.319019e-04	ci left: 9.462545e-01	ci right 9.466634e-01	k: 4410500	n:4660000
KS ci ratio: 1.003974e-01	ci left: 3.106168e-04	ci right 3.436573e-04	k: 1523	n:4660000
FNBP4   4660000 perm   8517 sec   (547 perm/sec)   p_kst 3.268240e-04   p_cons 9.464592e-01   p_joint 3.268240e-04

Joint ci ratio: 1.003316e-01	ci left: 3.103692e-04	ci right 3.433605e-04	k: 1525	n:4670000
Cons ci ratio: 4.314544e-04	ci left: 9.462511e-01	ci right 9.466597e-01	k: 4419948	n:4670000
KS ci ratio: 1.003316e-01	ci left: 3.103692e-04	ci right 3.433605e-04	k: 1525	n:4670000
FNBP4   4670000 perm   8552 sec   (546 perm/sec)   p_kst 3.265525e-04   p_cons 9.464557e-01   p_joint 3.265525e-04

Joint ci ratio: 1.002004e-01	ci left: 3.105393e-04	ci right 3.435029e-04	k: 1529	n:4680000
Cons ci ratio: 4.310182e-04	ci left: 9.462454e-01	ci right 9.466536e-01	k: 4429385	n:4680000
KS ci ratio: 1.002004e-01	ci left: 3.105393e-04	ci right 3.435029e-04	k: 1529	n:4680000
FNBP4   4680000 perm   8588 sec   (545 perm/sec)   p_kst 3.267094e-04   p_cons 9.464498e-01   p_joint 3.267094e-04

Joint ci ratio: 1.001023e-01	ci left: 3.105008e-04	ci right 3.434262e-04	k: 1532	n:4690000
Cons ci ratio: 4.305798e-04	ci left: 9.462406e-01	ci right 9.466484e-01	k: 4438826	n:4690000
KS ci ratio: 1.001023e-01	ci left: 3.105008e-04	ci right 3.434262e-04	k: 1532	n:4690000
FNBP4   4690000 perm   8623 sec   (544 perm/sec)   p_kst 3.266525e-04   p_cons 9.464448e-01   p_joint 3.266525e-04

Joint ci ratio: 9.997193e-02	ci left: 3.106699e-04	ci right 3.435678e-04	k: 1536	n:4700000
Cons ci ratio: 4.301561e-04	ci left: 9.462327e-01	ci right 9.466400e-01	k: 4448252	n:4700000
KS ci ratio: 9.997193e-02	ci left: 3.106699e-04	ci right 3.435678e-04	k: 1536	n:4700000
FNBP4   4700000 perm   8658 sec   (543 perm/sec)   p_kst 3.268085e-04   p_cons 9.464366e-01   p_joint 3.268085e-04

Outputting figure to mutsig2_images.part000000000066/FNBP4.2_3122_4700000_0.00032681_0.94644_0.00032681.png
                gene_name: FNBP4
               theta_stop: 0.100 
                    nperm: 4700000 
                     p_ks: 0.00033 
        ci_ks_bounds_left: 0.00031 
       ci_ks_bounds_right: 0.00034 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.00033 
     ci_joint_bounds_left: 0.00031 
    ci_joint_bounds_right: 0.00034 

Current progress: 40 percent done.
FNIP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.293342e-02	ci left: 7.363367e-01	ci right 7.535204e-01	k: 7450	n:10000
Cons ci ratio: 6.977475e-02	ci left: 2.314584e-01	ci right 2.482934e-01	k: 2398	n:10000
KS ci ratio: 3.180359e-02	ci left: 5.933315e-01	ci right 6.126085e-01	k: 6030	n:10000
FNIP2   10000 perm   2 sec   (5197 perm/sec)   p_kst 6.030000e-01   p_cons 2.398000e-01   p_joint 7.450000e-01

Outputting figure to mutsig2_images.part000000000066/FNIP2.2_3413_10000_0.603_0.2398_0.745.png
                gene_name: FNIP2
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 60 percent done.
FOXA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.553281e-02	ci left: 6.930285e-01	ci right 7.110537e-01	k: 7021	n:10000
Cons ci ratio: 9.442515e-02	ci left: 1.400152e-01	ci right 1.539911e-01	k: 1469	n:10000
KS ci ratio: 2.778928e-02	ci left: 6.561554e-01	ci right 6.747481e-01	k: 6655	n:10000
FOXA1   10000 perm   1 sec   (7457 perm/sec)   p_kst 6.655000e-01   p_cons 1.469000e-01   p_joint 7.021000e-01

Outputting figure to mutsig2_images.part000000000066/FOXA1.2_1427_10000_0.6655_0.1469_0.7021.png
                gene_name: FOXA1
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 80 percent done.
FOXA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.364973e-03	ci left: 9.711128e-01	ci right 9.774068e-01	k: 9744	n:10000
Cons ci ratio: 1.806180e-02	ci left: 8.173068e-01	ci right 8.323035e-01	k: 8249	n:10000
KS ci ratio: 1.659824e-02	ci left: 8.408121e-01	ci right 8.549846e-01	k: 8480	n:10000
FOXA2   10000 perm   1 sec   (7579 perm/sec)   p_kst 8.480000e-01   p_cons 8.249000e-01   p_joint 9.744000e-01

Outputting figure to mutsig2_images.part000000000066/FOXA2.2_1400_10000_0.848_0.8249_0.9744.png
                gene_name: FOXA2
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000066
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 66 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1553>
Subject: Job 9877177: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1553>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000067> was used as the working directory.
Started at Fri Oct  5 22:40:26 2012
Results reported at Fri Oct  5 22:42:40 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000067.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000067.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 67  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000067.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    183.87 sec.
    Max Memory :      1916 MB
    Max Swap   :      4699 MB

    Max Processes  :         7
    Max Threads    :        60

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
67
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 67
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 67: processing genes 5985 - 6075
Calculating significance of each gene.
Using projection method.
5985	FPR3	1
5986	FRA10AC1	1
5987	FRAS1	1
5988	FREM1	4.893728e-01
5989	FREM2	3.581783e-01
5990	FRG1	1.203108e-08
5991	FRG2B	2.653908e-02
5992	FRK	1
5993	FRMD1	1
5994	FRMD3	1
5995	FRMD4A	1
5996	FRMD4B	1
5997	FRMD5	1
5998	FRMD6	1
5999	FRMD7	6.207535e-02
6000/18134 6000	FRMD8	1
6001	FRMPD1	1
6002	FRMPD2	2.249930e-01
6003	FRMPD4	1
6004	FRRS1	1
6005	FRS2	1
6006	FRS3	1
6007	FRY	5.463450e-01
6008	FRYL	1
6009	FRZB	1
6010	FSCB	2.384014e-01
6011	FSCN1	1
6012	FSCN2	7.497497e-02
6013	FSCN3	1.548956e-01
6014	FSD1	1
6015	FSD2	1
6016	FSHB	1
6017	FSHR	1
6018	FSIP1	1
6019	FST	8.857170e-02
6020	FSTL1	1
6021	FSTL3	1
6022	FSTL4	1
6023	FSTL5	1
6024	FTCD	1.386990e-03
6025	FTH1	1
6026	FTHL17	1
6027	FTL	1
6028	FTMT	1
6029	FTO	1
6030	FTSJ1	1
6031	FTSJ2	1
6032	FTSJ3	1
6033	FTSJD1	1
6034	FTSJD2	1
6035	FUBP1	1
6036	FUBP3	1
6037	FUCA1	1
6038	FUCA2	1
6039	FUK	6.566232e-02
6040	FUNDC1	1
6041	FUNDC2	1
6042	FURIN	1
6043	FUS	1
6044	FUT1	1
6045	FUT10	6.902118e-02
6046	FUT11	1
6047	FUT2	1
6048	FUT3	1
6049	FUT4	1
6050	FUT5	1
6051	FUT6	1
6052	FUT7	1
6053	FUT8	1
6054	FUT9	1
6055	FUZ	1
6056	FXC1	1
6057	FXN	1
In gene FXR1 the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 1934    n = 1	mu =   6.75e-07
6058	FXR1	1.729518e-01
6059	FXR2	1
6060	FXYD1	1
6061	FXYD2	1
6062	FXYD3	1
6063	FXYD4	1
6064	FXYD5	1
6065	FXYD6	1
6066	FXYD7	1
6067	FYB	1
6068	FYCO1	1
6069	FYN	1
6070	FYTTD1	1
6071	FZD1	2.410307e-01
6072	FZD10	4.788206e-02
In gene FZD2 the following bins exceed PROBCAP:
    PRAD-EJ-5511	categ 6	N = 1579    n = 1	mu =   2.34e-07
6073	FZD2	5.779514e-02
6074	FZD3	1
In gene FZD4 the following bins exceed PROBCAP:
    PRAD-CH-5761	categ 6	N = 1587    n = 1	mu =   2.99e-07
6075	FZD4	6.273896e-02
Done

Running MutSig 2:
Scatter job 67: processing genes 5985 - 6075
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
FRG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.864157e-02	ci left: 4.972503e-01	ci right 5.169456e-01	k: 5071	n:10000
Cons ci ratio: 1.709886e-03	ci left: 9.971567e-01	ci right 9.989329e-01	k: 9982	n:10000
KS ci ratio: 5.815626e-02	ci left: 3.032226e-01	ci right 3.214868e-01	k: 3123	n:10000
FRG1   10000 perm   2 sec   (5956 perm/sec)   p_kst 3.123000e-01   p_cons 9.982000e-01   p_joint 5.071000e-01

Outputting figure to mutsig2_images.part000000000067/FRG1.6_813_10000_0.3123_0.9982_0.5071.png
                gene_name: FRG1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 20 percent done.
FZD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.530342e-02	ci left: 2.051084e-01	ci right 2.212590e-01	k: 2131	n:10000
Cons ci ratio: 1.012743e-02	ci left: 9.325769e-01	ci right 9.421664e-01	k: 9375	n:10000
KS ci ratio: 1.230716e-01	ci left: 8.640461e-02	ci right 9.783428e-02	k: 920	n:10000
FZD2   10000 perm   2 sec   (5797 perm/sec)   p_kst 9.200000e-02   p_cons 9.375000e-01   p_joint 2.131000e-01

Joint ci ratio: 6.219628e-02	ci left: 1.605216e-01	ci right 1.708758e-01	k: 3313	n:20000
Cons ci ratio: 7.017586e-03	ci left: 9.364141e-01	ci right 9.430574e-01	k: 18796	n:20000
KS ci ratio: 8.778979e-02	ci left: 8.665663e-02	ci right 9.466284e-02	k: 1812	n:20000
FZD2   20000 perm   4 sec   (5125 perm/sec)   p_kst 9.060000e-02   p_cons 9.398000e-01   p_joint 1.656500e-01

Outputting figure to mutsig2_images.part000000000067/FZD2.4_1702_20000_0.0906_0.9398_0.16565.png
                gene_name: FZD2
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.091 
        ci_ks_bounds_left: 0.087 
       ci_ks_bounds_right: 0.095 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 40 percent done.
FRAS1
Processing conservation and coverage...
80% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.854123e-02	ci left: 4.985503e-01	ci right 5.182448e-01	k: 5084	n:10000
Cons ci ratio: 7.465850e-02	ci left: 2.079681e-01	ci right 2.241977e-01	k: 2160	n:10000
KS ci ratio: 2.226371e-02	ci left: 7.475594e-01	ci right 7.644912e-01	k: 7561	n:10000
FRAS1   10000 perm   4 sec   (2660 perm/sec)   p_kst 7.561000e-01   p_cons 2.160000e-01   p_joint 5.084000e-01

Outputting figure to mutsig2_images.part000000000067/FRAS1.3_12410_10000_0.7561_0.216_0.5084.png
                gene_name: FRAS1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 60 percent done.
FTCD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.434968e-02	ci left: 5.558170e-01	ci right 5.753448e-01	k: 5656	n:10000
Cons ci ratio: 3.722914e-02	ci left: 5.158568e-01	ci right 5.355282e-01	k: 5257	n:10000
KS ci ratio: 4.113069e-02	ci left: 4.660698e-01	ci right 4.857443e-01	k: 4759	n:10000
FTCD   10000 perm   2 sec   (6342 perm/sec)   p_kst 4.759000e-01   p_cons 5.257000e-01   p_joint 5.656000e-01

Outputting figure to mutsig2_images.part000000000067/FTCD.2_1682_10000_0.4759_0.5257_0.5656.png
                gene_name: FTCD
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 80 percent done.
FZD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.568287e-02	ci left: 5.369808e-01	ci right 5.565920e-01	k: 5468	n:10000
KS ci ratio: 3.212332e-02	ci left: 5.885136e-01	ci right 6.078292e-01	k: 5982	n:10000
FZD4   10000 perm   2 sec   (6245 perm/sec)   p_kst 5.982000e-01   p_cons 5.468000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000067/FZD4.2_1622_10000_0.5982_0.5468_1.png
                gene_name: FZD4
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000067
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 67 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1537>
Subject: Job 9877182: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1537>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000068> was used as the working directory.
Started at Fri Oct  5 22:40:26 2012
Results reported at Fri Oct  5 22:43:30 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000068.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000068.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 68  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000068.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    210.54 sec.
    Max Memory :      2215 MB
    Max Swap   :      4663 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
68
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 68
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 68: processing genes 6076 - 6166
Calculating significance of each gene.
Using projection method.
6076	FZD5	1.439569e-01
6077	FZD6	1.162814e-01
6078	FZD7	1
6079	FZD8	1
6080	FZD9	6.365967e-02
6081	FZR1	1
6082	G0S2	1
6083	G2E3	4.163077e-02
6084	G3BP1	1
6085	G3BP2	1
6086	G6PC	1
6087	G6PC2	1
6088	G6PC3	1
6089	G6PD	1
6090	GAA	2.129756e-01
6091	GAB1	1
6092	GAB2	1
6093	GAB3	1
6094	GAB4	1
6095	GABARAP	1
6096	GABARAPL1	1
6097	GABARAPL2	1
6098	GABBR1	1
6099	GABBR2	1
6100	GABPA	1
6101	GABPB1	1
6102	GABPB2	1
6103	GABRA1	1
6104	GABRA2	1
6105	GABRA3	1
6106	GABRA4	8.674411e-02
6107	GABRA5	1
6108	GABRA6	1
6109	GABRB1	1
6110	GABRB2	1
6111	GABRB3	1
6112	GABRD	1
6113	GABRE	6.318173e-03
6114	GABRG1	6.550411e-03
6115	GABRG2	1
6116	GABRG3	1
6117	GABRP	1
6118	GABRQ	1.111322e-01
6119	GABRR1	1.758300e-01
6120	GABRR2	6.105600e-03
6121	GABRR3	1
6122	GAD1	1
6123	GAD2	1
6124	GADD45A	1
6125	GADD45B	1
6126	GADD45G	1
6127	GADD45GIP1	1
6128	GADL1	1
6129	GAGE1	1
6130	GAGE10	1
6131	GAGE13	1
6132	GAGE2B	1
6133	GAGE2E	1
6134	GAGE8	1
6135	GAK	1
6136	GAL	1
6137	GAL3ST1	1
6138	GAL3ST2	1
6139	GAL3ST3	1
6140	GAL3ST4	1
6141	GALC	1
6142	GALE	1
6143	GALK1	1
6144	GALK2	1
6145	GALM	1
6146	GALNS	1
6147	GALNT1	1
6148	GALNT10	1
6149	GALNT11	7.231507e-02
6150	GALNT12	1
6151	GALNT13	8.049227e-02
6152	GALNT14	1
6153	GALNT2	1
6154	GALNT3	1
6155	GALNT4	5.713348e-03
6156	GALNT5	1
In gene GALNT6 the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 1909    n = 1	mu =   9.08e-07
6157	GALNT6	2.554177e-02
6158	GALNT7	1
6159	GALNT8	1.040830e-01
6160	GALNT9	1
6161	GALNTL1	1
6162	GALNTL2	1
6163	GALNTL4	1
6164	GALNTL5	6.764221e-02
6165	GALNTL6	1
6166	GALP	1
Done

Running MutSig 2:
Scatter job 68: processing genes 6076 - 6166
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
GABRE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.955631e-02	ci left: 4.855531e-01	ci right 5.052495e-01	k: 4954	n:10000
Cons ci ratio: 1.242968e-02	ci left: 9.028849e-01	ci right 9.142758e-01	k: 9087	n:10000
KS ci ratio: 1.169468e-01	ci left: 9.506351e-02	ci right 1.069701e-01	k: 1009	n:10000
GABRE   10000 perm   2 sec   (5075 perm/sec)   p_kst 1.009000e-01   p_cons 9.087000e-01   p_joint 4.954000e-01

Joint ci ratio: 4.607373e-02	ci left: 2.595878e-01	ci right 2.718804e-01	k: 5314	n:20000
Cons ci ratio: 8.691994e-03	ci left: 9.064588e-01	ci right 9.144214e-01	k: 18210	n:20000
KS ci ratio: 8.402037e-02	ci left: 9.401126e-02	ci right 1.023060e-01	k: 1962	n:20000
GABRE   20000 perm   8 sec   (2426 perm/sec)   p_kst 9.810000e-02   p_cons 9.105000e-01   p_joint 2.657000e-01

Outputting figure to mutsig2_images.part000000000068/GABRE.2_1557_20000_0.0981_0.9105_0.2657.png
                gene_name: GABRE
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.098 
        ci_ks_bounds_left: 0.094 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 20 percent done.
GABRG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.848396e-03	ci left: 9.358910e-01	ci right 9.452503e-01	k: 9407	n:10000
Cons ci ratio: 1.912809e-02	ci left: 7.998365e-01	ci right 8.153839e-01	k: 8077	n:10000
KS ci ratio: 6.211914e-02	ci left: 2.758690e-01	ci right 2.936566e-01	k: 2847	n:10000
GABRG1   10000 perm   2 sec   (6315 perm/sec)   p_kst 2.847000e-01   p_cons 8.077000e-01   p_joint 9.407000e-01

Outputting figure to mutsig2_images.part000000000068/GABRG1.2_1434_10000_0.2847_0.8077_0.9407.png
                gene_name: GABRG1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 40 percent done.
GABRR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.938267e-02	ci left: 4.877522e-01	ci right 5.074492e-01	k: 4976	n:10000
Cons ci ratio: 1.624806e-01	ci left: 5.051566e-02	ci right 5.954576e-02	k: 549	n:10000
KS ci ratio: 2.963012e-01	ci left: 1.465041e-02	ci right 1.983629e-02	k: 171	n:10000
GABRR2   10000 perm   2 sec   (5799 perm/sec)   p_kst 1.710000e-02   p_cons 5.490000e-02   p_joint 4.976000e-01

Joint ci ratio: 2.787493e-02	ci left: 4.901964e-01	ci right 5.041044e-01	k: 9943	n:20000
Cons ci ratio: 1.140188e-01	ci left: 5.260997e-02	ci right 5.901994e-02	k: 1115	n:20000
KS ci ratio: 2.098322e-01	ci left: 1.534872e-02	ci right 1.899360e-02	k: 342	n:20000
GABRR2   20000 perm   4 sec   (5179 perm/sec)   p_kst 1.710000e-02   p_cons 5.575000e-02   p_joint 4.971500e-01

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 9.423476e-02	ci left: 5.195785e-02	ci right 5.712884e-02	k: 1635	n:30000
KS ci ratio: 1.695765e-01	ci left: 1.601447e-02	ci right 1.901335e-02	k: 524	n:30000
GABRR2   30000 perm   6 sec   (4914 perm/sec)   p_kst 1.746667e-02   p_cons 5.450000e-02   p_joint 1

Joint ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
Cons ci ratio: 8.177534e-02	ci left: 5.209919e-02	ci right 5.656578e-02	k: 2172	n:40000
KS ci ratio: 1.485961e-01	ci left: 1.582807e-02	ci right 1.839272e-02	k: 683	n:40000
GABRR2   40000 perm   8 sec   (4733 perm/sec)   p_kst 1.707500e-02   p_cons 5.430000e-02   p_joint 1

Joint ci ratio: 7.839686e-05	ci left: 9.999262e-01	ci right 1	k: 50000	n:50000
Cons ci ratio: 7.284848e-02	ci left: 5.274239e-02	ci right 5.674950e-02	k: 2736	n:50000
KS ci ratio: 1.325935e-01	ci left: 1.603978e-02	ci right 1.833677e-02	k: 858	n:50000
GABRR2   50000 perm   11 sec   (4598 perm/sec)   p_kst 1.716000e-02   p_cons 5.472000e-02   p_joint 1

Joint ci ratio: 6.533116e-05	ci left: 9.999385e-01	ci right 1	k: 60000	n:60000
Cons ci ratio: 6.672084e-02	ci left: 5.258206e-02	ci right 5.622786e-02	k: 3263	n:60000
KS ci ratio: 1.189902e-01	ci left: 1.670851e-02	ci right 1.883850e-02	k: 1065	n:60000
GABRR2   60000 perm   14 sec   (4438 perm/sec)   p_kst 1.775000e-02   p_cons 5.438333e-02   p_joint 1

Joint ci ratio: 5.599840e-05	ci left: 9.999473e-01	ci right 1	k: 70000	n:70000
Cons ci ratio: 6.220462e-02	ci left: 5.201329e-02	ci right 5.536668e-02	k: 3757	n:70000
KS ci ratio: 1.101937e-01	ci left: 1.677778e-02	ci right 1.874820e-02	k: 1242	n:70000
GABRR2   70000 perm   16 sec   (4397 perm/sec)   p_kst 1.774286e-02   p_cons 5.367143e-02   p_joint 1

Joint ci ratio: 4.899878e-05	ci left: 9.999539e-01	ci right 1	k: 80000	n:80000
Cons ci ratio: 5.817180e-02	ci left: 5.214787e-02	ci right 5.528459e-02	k: 4296	n:80000
KS ci ratio: 1.029873e-01	ci left: 1.687065e-02	ci right 1.871455e-02	k: 1422	n:80000
GABRR2   80000 perm   19 sec   (4293 perm/sec)   p_kst 1.777500e-02   p_cons 5.370000e-02   p_joint 1

Joint ci ratio: 4.355459e-05	ci left: 9.999590e-01	ci right 1	k: 90000	n:90000
Cons ci ratio: 5.474404e-02	ci left: 5.242254e-02	ci right 5.538407e-02	k: 4850	n:90000
KS ci ratio: 9.743492e-02	ci left: 1.680517e-02	ci right 1.853722e-02	k: 1589	n:90000
GABRR2   90000 perm   21 sec   (4248 perm/sec)   p_kst 1.765556e-02   p_cons 5.388889e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000068/GABRR2.2_1509_90000_0.017656_0.053889_1.png
                gene_name: GABRR2
               theta_stop: 0.097 
                    nperm: 90000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.055 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
GALNT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.714031e-01	ci left: 4.542628e-02	ci right 5.403844e-02	k: 496	n:10000
Cons ci ratio: 2.413489e-01	ci left: 2.259324e-02	ci right 2.888717e-02	k: 256	n:10000
KS ci ratio: 3.821876e-02	ci left: 5.027508e-01	ci right 5.224418e-01	k: 5126	n:10000
GALNT4   10000 perm   2 sec   (6195 perm/sec)   p_kst 5.126000e-01   p_cons 2.560000e-02   p_joint 4.960000e-02

Joint ci ratio: 1.260285e-02	ci left: 8.234056e-01	ci right 8.338986e-01	k: 16574	n:20000
Cons ci ratio: 1.718684e-01	ci left: 2.316787e-02	ci right 2.757159e-02	k: 506	n:20000
KS ci ratio: 2.727385e-02	ci left: 5.010956e-01	ci right 5.150020e-01	k: 10161	n:20000
GALNT4   20000 perm   4 sec   (5433 perm/sec)   p_kst 5.080500e-01   p_cons 2.530000e-02   p_joint 8.287000e-01

Joint ci ratio: 1.001342e-01	ci left: 4.616135e-02	ci right 5.105987e-02	k: 1457	n:30000
Cons ci ratio: 1.404733e-01	ci left: 2.352025e-02	ci right 2.710582e-02	k: 758	n:30000
KS ci ratio: 2.239686e-02	ci left: 4.995254e-01	ci right 5.108736e-01	k: 15156	n:30000
GALNT4   30000 perm   6 sec   (5164 perm/sec)   p_kst 5.052000e-01   p_cons 2.526667e-02   p_joint 4.856667e-02

Joint ci ratio: 8.700168e-02	ci left: 4.619480e-02	ci right 5.042109e-02	k: 1931	n:40000
Cons ci ratio: 1.217774e-01	ci left: 2.371035e-02	ci right 2.680909e-02	k: 1009	n:40000
KS ci ratio: 1.942270e-02	ci left: 4.996126e-01	ci right 5.094367e-01	k: 20181	n:40000
GALNT4   40000 perm   8 sec   (4975 perm/sec)   p_kst 5.045250e-01   p_cons 2.522500e-02   p_joint 4.827500e-02

Joint ci ratio: 8.574822e-02	ci left: 3.839706e-02	ci right 4.185659e-02	k: 2005	n:50000
Cons ci ratio: 1.092101e-01	ci left: 2.374649e-02	ci right 2.650902e-02	k: 1255	n:50000
KS ci ratio: 1.734541e-02	ci left: 5.009074e-01	ci right 5.096920e-01	k: 25265	n:50000
GALNT4   50000 perm   10 sec   (4825 perm/sec)   p_kst 5.053000e-01   p_cons 2.510000e-02   p_joint 4.010000e-02

Joint ci ratio: 7.886263e-02	ci left: 3.798813e-02	ci right 4.112327e-02	k: 2372	n:60000
Cons ci ratio: 1.004563e-01	ci left: 2.350530e-02	ci right 2.600762e-02	k: 1484	n:60000
KS ci ratio: 1.583895e-02	ci left: 5.011410e-01	ci right 5.091586e-01	k: 30309	n:60000
GALNT4   60000 perm   13 sec   (4705 perm/sec)   p_kst 5.051500e-01   p_cons 2.473333e-02   p_joint 3.953333e-02

Joint ci ratio: 7.281438e-02	ci left: 3.830764e-02	ci right 4.121638e-02	k: 2782	n:70000
Cons ci ratio: 9.263520e-02	ci left: 2.378620e-02	ci right 2.611055e-02	k: 1745	n:70000
KS ci ratio: 1.467853e-02	ci left: 5.009460e-01	ci right 5.083679e-01	k: 35326	n:70000
GALNT4   70000 perm   15 sec   (4598 perm/sec)   p_kst 5.046571e-01   p_cons 2.492857e-02   p_joint 3.974286e-02

Outputting figure to mutsig2_images.part000000000068/GALNT4.2_1741_70000_0.50466_0.024929_0.039743.png
                gene_name: GALNT4
               theta_stop: 0.093 
                    nperm: 70000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.038 
    ci_joint_bounds_right: 0.041 

Current progress: 80 percent done.
GALNT6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.138026e-02	ci left: 2.807224e-01	ci right 2.986003e-01	k: 2896	n:10000
Cons ci ratio: 8.624746e-02	ci left: 1.637654e-01	ci right 1.786266e-01	k: 1711	n:10000
KS ci ratio: 2.728533e-02	ci left: 6.643103e-01	ci right 6.827885e-01	k: 6736	n:10000
GALNT6   10000 perm   2 sec   (5420 perm/sec)   p_kst 6.736000e-01   p_cons 1.711000e-01   p_joint 2.896000e-01

Outputting figure to mutsig2_images.part000000000068/GALNT6.2_1909_10000_0.6736_0.1711_0.2896.png
                gene_name: GALNT6
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000068
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 68 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1533>
Subject: Job 9877187: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1533>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000069> was used as the working directory.
Started at Fri Oct  5 22:40:26 2012
Results reported at Fri Oct  5 22:42:27 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000069.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000069.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 69  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000069.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    152.85 sec.
    Max Memory :      1947 MB
    Max Swap   :      4605 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
69
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 69
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 69: processing genes 6167 - 6256
Calculating significance of each gene.
Using projection method.
6167	GALR1	1
6168	GALR2	1
6169	GALR3	1
6170	GALT	1
6171	GAMT	1
6172	GAN	1
In gene GANAB the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 2991    n = 1	mu =   6.75e-07
6173	GANAB	2.615388e-01
6174	GANC	1
6175	GAP43	1
6176	GAPDH	1
6177	GAPDHS	1
6178	GAPT	1
In gene GAPVD1 the following bins exceed PROBCAP:
    PRAD-CH-5761	categ 6	N = 4568    n = 1	mu =   2.99e-07
6179	GAPVD1	5.406022e-02
6180	GAR1	1
6181	GARNL3	1
6182	GARS	5.451694e-02
6183	GART	1.045009e-01
6184	GAS1	1
6185	GAS2	1
6186	GAS2L1	1
6187	GAS2L2	1.454556e-01
6188	GAS2L3	1
6189	GAS6	1
6190	GAS7	1
6191	GAS8	1
6192	GAST	1
6193	GATA1	1
6194	GATA2	1
6195	GATA3	1
6196	GATA4	1
6197	GATA5	1
6198	GATA6	1
6199	GATAD1	1
6200	GATAD2A	1
6201	GATAD2B	1
6202	GATC	1
6203	GATM	1
6204	GATS	1
6205	GATSL3	1
6206	GBA	1
6207	GBA2	1
6208	GBA3	1
6209	GBAS	1
6210	GBE1	1.526467e-01
6211	GBF1	1
6212	GBGT1	1
6213	GBP1	5.996416e-02
6214	GBP2	1
In gene GBP3 the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 1828    n = 1	mu =   9.08e-07
6215	GBP3	1.727080e-01
6216	GBP4	1
6217	GBP5	1
6218	GBP6	1
6219	GBP7	1
6220	GBX1	1
6221	GBX2	1
6222	GC	1
6223	GCA	1
6224	GCAT	1
6225	GCC1	1
6226	GCC2	8.305870e-02
6227	GCDH	1
6228	GCET2	1
6229	GCFC1	1
6230	GCG	1
6231	GCH1	1
6232	GCHFR	1
6233	GCK	4.715703e-02
6234	GCKR	1
6235	GCLC	1
6236	GCLM	1
6237	GCM1	1
6238	GCM2	1.435859e-01
6239	GCN1L1	1
6240	GCNT1	1
6241	GCNT2	1
6242	GCNT3	1
6243	GCNT4	1
6244	GCOM1	1
6245	GCSH	1
6246	GDA	1
6247	GDAP1	1
6248	GDAP1L1	1
6249	GDAP2	1
6250	GDE1	1
6251	GDF10	1
6252	GDF11	1
6253	GDF15	1
6254	GDF2	1
6255	GDF3	1
6256	GDF5	1
Done

Running MutSig 2:
Scatter job 69: processing genes 6167 - 6256
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
GAPVD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.805859e-02	ci left: 2.405485e-01	ci right 2.575979e-01	k: 2490	n:10000
KS ci ratio: 6.222604e-02	ci left: 2.751757e-01	ci right 2.929502e-01	k: 2840	n:10000
GAPVD1   10000 perm   2 sec   (4816 perm/sec)   p_kst 2.840000e-01   p_cons 2.490000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000069/GAPVD1.2_4568_10000_0.284_0.249_1.png
                gene_name: GAPVD1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
GCC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.483020e-01	ci left: 6.043844e-02	ci right 7.021664e-02	k: 652	n:10000
Cons ci ratio: 1.881451e-01	ci left: 3.767505e-02	ci right 4.559480e-02	k: 415	n:10000
KS ci ratio: 1.991862e-02	ci left: 7.867494e-01	ci right 8.026785e-01	k: 7948	n:10000
GCC2   10000 perm   2 sec   (4449 perm/sec)   p_kst 7.948000e-01   p_cons 4.150000e-02   p_joint 6.520000e-02

Joint ci ratio: 1.223735e-01	ci left: 4.580631e-02	ci right 5.182574e-02	k: 975	n:20000
Cons ci ratio: 1.256566e-01	ci left: 4.347738e-02	ci right 4.935540e-02	k: 927	n:20000
KS ci ratio: 1.414910e-02	ci left: 7.876205e-01	ci right 7.988941e-01	k: 15866	n:20000
GCC2   20000 perm   5 sec   (4003 perm/sec)   p_kst 7.933000e-01   p_cons 4.635000e-02   p_joint 4.875000e-02

Joint ci ratio: 9.576109e-02	ci left: 5.036128e-02	ci right 5.545908e-02	k: 1586	n:30000
Cons ci ratio: 1.060398e-01	ci left: 4.125192e-02	ci right 4.590366e-02	k: 1306	n:30000
KS ci ratio: 1.161131e-02	ci left: 7.869927e-01	ci right 7.962174e-01	k: 23749	n:30000
GCC2   30000 perm   8 sec   (3848 perm/sec)   p_kst 7.916333e-01   p_cons 4.353333e-02   p_joint 5.286667e-02

Joint ci ratio: 5.103709e-02	ci left: 1.252351e-01	ci right 1.318189e-01	k: 5140	n:40000
Cons ci ratio: 9.168694e-02	ci left: 4.169289e-02	ci right 4.572369e-02	k: 1747	n:40000
KS ci ratio: 1.002696e-02	ci left: 7.885679e-01	ci right 7.965396e-01	k: 31703	n:40000
GCC2   40000 perm   11 sec   (3724 perm/sec)   p_kst 7.925750e-01   p_cons 4.367500e-02   p_joint 1.285000e-01

Outputting figure to mutsig2_images.part000000000069/GCC2.2_5147_40000_0.79258_0.043675_0.1285.png
                gene_name: GCC2
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.044 
      ci_cons_bounds_left: 0.042 
     ci_cons_bounds_right: 0.046 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000069
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 69 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 9877196: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000070> was used as the working directory.
Started at Fri Oct  5 22:40:41 2012
Results reported at Fri Oct  5 22:50:20 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000070.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000070.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 70  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000070.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    576.25 sec.
    Max Memory :      2182 MB
    Max Swap   :      4756 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
70
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 70
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 70: processing genes 6257 - 6347
Calculating significance of each gene.
Using projection method.
6257	GDF6	1.441583e-01
6258	GDF7	1
6259	GDF9	1
6260	GDI1	1
6261	GDI2	1
6262	GDNF	1
6263	GDPD1	1
6264	GDPD2	1
6265	GDPD3	1
6266	GDPD4	1
In gene GDPD5 the following bins exceed PROBCAP:
    PRAD-CH-5794	categ 6	N = 1730    n = 1	mu =   2.02e-07
6267	GDPD5	4.503704e-02
6268	GEFT	1
6269	GEM	1
6270	GEMIN4	1
6271	GEMIN5	1
6272	GEMIN6	1
6273	GEMIN7	1
6274	GEMIN8	1
6275	GEN1	1
6276	GET4	1
6277	GFAP	1
6278	GFER	1
6279	GFI1	1
6280	GFI1B	3.675175e-02
6281	GFM1	1
6282	GFM2	1
6283	GFOD1	1
6284	GFOD2	1
6285	GFPT1	1
6286	GFPT2	1.178390e-01
6287	GFRA1	1
6288	GFRA2	1
6289	GFRA3	1
6290	GFRAL	1
6291	GGA1	1
6292	GGA2	1
6293	GGA3	1.061284e-01
6294	GGCT	1
6295	GGCX	1
6296	GGH	1
6297	GGN	1
6298	GGNBP2	1
6299	GGPS1	1
6300	GGT1	1
6301	GGT5	4.219074e-02
6302	GGT6	1
6303	GGT7	1
6304	GGTLC1	1
6305	GGTLC2	1.651493e-04
6306	GH1	1
6307	GH2	7.420415e-02
6308	GHDC	1
In gene GHITM the following bins exceed PROBCAP:
    PRAD-EJ-5522	categ 6	N = 1070    n = 1	mu =   6.65e-08
6309	GHITM	9.556191e-03
6310	GHR	1.925743e-01
6311	GHRH	1
6312	GHRHR	1
6313	GHRL	1
6314	GHSR	1
6315	GIF	1
6316	GIGYF1	1
6317	GIGYF2	8.191912e-02
6318	GIMAP1	1
6319	GIMAP2	1
6320	GIMAP4	1
6321	GIMAP5	1
6322	GIMAP6	1
6323	GIMAP7	1.340874e-02
6324	GIMAP8	1
6325	GIN1	1
6326	GINS1	1
6327	GINS2	1
6328	GINS3	1
6329	GINS4	1
6330	GIP	1
6331	GIPC1	1
6332	GIPC2	1
6333	GIPC3	5.965370e-02
6334	GIPR	1
6335	GIT1	1
6336	GIT2	1
6337	GJA1	1
6338	GJA10	1
6339	GJA3	1
6340	GJA4	7.702347e-02
6341	GJA5	7.617851e-02
6342	GJA8	1
6343	GJA9	1
6344	GJB1	1
6345	GJB2	1
6346	GJB3	6.842558e-03
6347	GJB4	1
Done

Running MutSig 2:
Scatter job 70: processing genes 6257 - 6347
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
GGT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.895376e-02	ci left: 3.810207e-01	ci right 4.002431e-01	k: 3906	n:10000
Cons ci ratio: 1.171276e-02	ci left: 9.125529e-01	ci right 9.234021e-01	k: 9181	n:10000
KS ci ratio: 6.739209e-02	ci left: 2.442058e-01	ci right 2.613385e-01	k: 2527	n:10000
GGT1   10000 perm   1 sec   (6726 perm/sec)   p_kst 2.527000e-01   p_cons 9.181000e-01   p_joint 3.906000e-01

Outputting figure to mutsig2_images.part000000000070/GGT1.3_1758_10000_0.2527_0.9181_0.3906.png
                gene_name: GGT1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 33 percent done.
GGTLC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.299974e-02	ci left: 2.702248e-01	ci right 2.879041e-01	k: 2790	n:10000
Cons ci ratio: 4.389437e-02	ci left: 4.338303e-01	ci right 4.534025e-01	k: 4436	n:10000
KS ci ratio: 8.776711e-02	ci left: 1.589518e-01	ci right 1.736431e-01	k: 1662	n:10000
GGTLC2   10000 perm   1 sec   (7584 perm/sec)   p_kst 1.662000e-01   p_cons 4.436000e-01   p_joint 2.790000e-01

Outputting figure to mutsig2_images.part000000000070/GGTLC2.3_677_10000_0.1662_0.4436_0.279.png
                gene_name: GGTLC2
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 67 percent done.
GJB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.046878e+00	ci left: 6.923711e-04	ci right 2.222014e-03	k: 13	n:10000
Cons ci ratio: 9.776290e-02	ci left: 1.316879e-01	ci right 1.453234e-01	k: 1384	n:10000
KS ci ratio: 1.046878e+00	ci left: 6.923711e-04	ci right 2.222014e-03	k: 13	n:10000
GJB3   10000 perm   1 sec   (8011 perm/sec)   p_kst 1.300000e-03   p_cons 1.384000e-01   p_joint 1.300000e-03

Joint ci ratio: 7.538762e-01	ci left: 8.493734e-04	ci right 1.904225e-03	k: 26	n:20000
Cons ci ratio: 6.758020e-02	ci left: 1.391119e-01	ci right 1.488918e-01	k: 2879	n:20000
KS ci ratio: 7.538762e-01	ci left: 8.493734e-04	ci right 1.904225e-03	k: 26	n:20000
GJB3   20000 perm   3 sec   (7005 perm/sec)   p_kst 1.300000e-03   p_cons 1.439500e-01   p_joint 1.300000e-03

Joint ci ratio: 5.653410e-01	ci left: 1.151348e-03	ci right 2.082796e-03	k: 47	n:30000
Cons ci ratio: 5.589163e-02	ci left: 1.369154e-01	ci right 1.448210e-01	k: 4225	n:30000
KS ci ratio: 5.653410e-01	ci left: 1.151348e-03	ci right 2.082796e-03	k: 47	n:30000
GJB3   30000 perm   5 sec   (6660 perm/sec)   p_kst 1.566667e-03   p_cons 1.408333e-01   p_joint 1.566667e-03

Joint ci ratio: 5.282026e-01	ci left: 1.014319e-03	ci right 1.761095e-03	k: 54	n:40000
Cons ci ratio: 4.846212e-02	ci left: 1.371577e-01	ci right 1.439946e-01	k: 5622	n:40000
KS ci ratio: 5.282026e-01	ci left: 1.014319e-03	ci right 1.761095e-03	k: 54	n:40000
GJB3   40000 perm   6 sec   (6423 perm/sec)   p_kst 1.350000e-03   p_cons 1.405500e-01   p_joint 1.350000e-03

Joint ci ratio: 4.616391e-01	ci left: 1.109193e-03	ci right 1.790804e-03	k: 71	n:50000
Cons ci ratio: 4.342772e-02	ci left: 1.370686e-01	ci right 1.431732e-01	k: 7005	n:50000
KS ci ratio: 4.616391e-01	ci left: 1.109193e-03	ci right 1.790804e-03	k: 71	n:50000
GJB3   50000 perm   8 sec   (6227 perm/sec)   p_kst 1.420000e-03   p_cons 1.401000e-01   p_joint 1.420000e-03

Joint ci ratio: 4.299746e-01	ci left: 1.087094e-03	ci right 1.696114e-03	k: 82	n:60000
Cons ci ratio: 3.963353e-02	ci left: 1.373980e-01	ci right 1.429702e-01	k: 8410	n:60000
KS ci ratio: 4.299746e-01	ci left: 1.087094e-03	ci right 1.696114e-03	k: 82	n:60000
GJB3   60000 perm   10 sec   (6067 perm/sec)   p_kst 1.366667e-03   p_cons 1.401667e-01   p_joint 1.366667e-03

Joint ci ratio: 3.878522e-01	ci left: 1.175380e-03	ci right 1.752930e-03	k: 101	n:70000
Cons ci ratio: 3.673456e-02	ci left: 1.373381e-01	ci right 1.424918e-01	k: 9793	n:70000
KS ci ratio: 3.878522e-01	ci left: 1.175380e-03	ci right 1.752930e-03	k: 101	n:70000
GJB3   70000 perm   12 sec   (5927 perm/sec)   p_kst 1.442857e-03   p_cons 1.399000e-01   p_joint 1.442857e-03

Joint ci ratio: 3.718094e-01	ci left: 1.130214e-03	ci right 1.657013e-03	k: 110	n:80000
Cons ci ratio: 3.436945e-02	ci left: 1.374535e-01	ci right 1.422727e-01	k: 11188	n:80000
KS ci ratio: 3.718094e-01	ci left: 1.130214e-03	ci right 1.657013e-03	k: 110	n:80000
GJB3   80000 perm   14 sec   (5792 perm/sec)   p_kst 1.375000e-03   p_cons 1.398500e-01   p_joint 1.375000e-03

Joint ci ratio: 3.517819e-01	ci left: 1.135958e-03	ci right 1.630412e-03	k: 123	n:90000
Cons ci ratio: 3.241376e-02	ci left: 1.375184e-01	ci right 1.420604e-01	k: 12580	n:90000
KS ci ratio: 3.517819e-01	ci left: 1.135958e-03	ci right 1.630412e-03	k: 123	n:90000
GJB3   90000 perm   16 sec   (5668 perm/sec)   p_kst 1.366667e-03   p_cons 1.397778e-01   p_joint 1.366667e-03

Joint ci ratio: 3.384078e-01	ci left: 1.113696e-03	ci right 1.576006e-03	k: 133	n:100000
Cons ci ratio: 3.081050e-02	ci left: 1.371693e-01	ci right 1.414716e-01	k: 13931	n:100000
KS ci ratio: 3.384078e-01	ci left: 1.113696e-03	ci right 1.576006e-03	k: 133	n:100000
GJB3   100000 perm   18 sec   (5534 perm/sec)   p_kst 1.330000e-03   p_cons 1.393100e-01   p_joint 1.330000e-03

Joint ci ratio: 3.230986e-01	ci left: 1.120825e-03	ci right 1.560689e-03	k: 146	n:110000
Cons ci ratio: 2.925391e-02	ci left: 1.382707e-01	ci right 1.423847e-01	k: 15435	n:110000
KS ci ratio: 3.230986e-01	ci left: 1.120825e-03	ci right 1.560689e-03	k: 146	n:110000
GJB3   110000 perm   20 sec   (5425 perm/sec)   p_kst 1.327273e-03   p_cons 1.403182e-01   p_joint 1.327273e-03

Joint ci ratio: 3.058901e-01	ci left: 1.157920e-03	ci right 1.583431e-03	k: 163	n:120000
Cons ci ratio: 2.806015e-02	ci left: 1.379171e-01	ci right 1.418504e-01	k: 16785	n:120000
KS ci ratio: 3.058901e-01	ci left: 1.157920e-03	ci right 1.583431e-03	k: 163	n:120000
GJB3   120000 perm   23 sec   (5321 perm/sec)   p_kst 1.358333e-03   p_cons 1.398750e-01   p_joint 1.358333e-03

Joint ci ratio: 2.887805e-01	ci left: 1.211234e-03	ci right 1.626901e-03	k: 183	n:130000
Cons ci ratio: 2.697643e-02	ci left: 1.378426e-01	ci right 1.416196e-01	k: 18164	n:130000
KS ci ratio: 2.887805e-01	ci left: 1.211234e-03	ci right 1.626901e-03	k: 183	n:130000
GJB3   130000 perm   25 sec   (5223 perm/sec)   p_kst 1.407692e-03   p_cons 1.397231e-01   p_joint 1.407692e-03

Joint ci ratio: 2.756102e-01	ci left: 1.244198e-03	ci right 1.648332e-03	k: 201	n:140000
Cons ci ratio: 2.594529e-02	ci left: 1.383710e-01	ci right 1.420153e-01	k: 19626	n:140000
KS ci ratio: 2.756102e-01	ci left: 1.244198e-03	ci right 1.648332e-03	k: 201	n:140000
GJB3   140000 perm   27 sec   (5125 perm/sec)   p_kst 1.435714e-03   p_cons 1.401857e-01   p_joint 1.435714e-03

Joint ci ratio: 2.684023e-01	ci left: 1.229583e-03	ci right 1.616767e-03	k: 212	n:150000
Cons ci ratio: 2.508422e-02	ci left: 1.382543e-01	ci right 1.417730e-01	k: 21001	n:150000
KS ci ratio: 2.684023e-01	ci left: 1.229583e-03	ci right 1.616767e-03	k: 212	n:150000
GJB3   150000 perm   30 sec   (5031 perm/sec)   p_kst 1.413333e-03   p_cons 1.400067e-01   p_joint 1.413333e-03

Joint ci ratio: 2.566199e-01	ci left: 1.269516e-03	ci right 1.648918e-03	k: 232	n:160000
Cons ci ratio: 2.422432e-02	ci left: 1.389375e-01	ci right 1.423506e-01	k: 22502	n:160000
KS ci ratio: 2.566199e-01	ci left: 1.269516e-03	ci right 1.648918e-03	k: 232	n:160000
GJB3   160000 perm   32 sec   (4947 perm/sec)   p_kst 1.450000e-03   p_cons 1.406375e-01   p_joint 1.450000e-03

Joint ci ratio: 2.492416e-01	ci left: 1.271972e-03	ci right 1.639484e-03	k: 246	n:170000
Cons ci ratio: 2.350473e-02	ci left: 1.389508e-01	ci right 1.422615e-01	k: 23902	n:170000
KS ci ratio: 2.492416e-01	ci left: 1.271972e-03	ci right 1.639484e-03	k: 246	n:170000
GJB3   170000 perm   35 sec   (4866 perm/sec)   p_kst 1.447059e-03   p_cons 1.406000e-01   p_joint 1.447059e-03

Joint ci ratio: 2.383840e-01	ci left: 1.321286e-03	ci right 1.683962e-03	k: 269	n:180000
Cons ci ratio: 2.285618e-02	ci left: 1.388534e-01	ci right 1.420693e-01	k: 25282	n:180000
KS ci ratio: 2.383840e-01	ci left: 1.321286e-03	ci right 1.683962e-03	k: 269	n:180000
GJB3   180000 perm   38 sec   (4777 perm/sec)   p_kst 1.494444e-03   p_cons 1.404556e-01   p_joint 1.494444e-03

Joint ci ratio: 2.304122e-01	ci left: 1.345876e-03	ci right 1.701191e-03	k: 288	n:190000
Cons ci ratio: 2.226726e-02	ci left: 1.386731e-01	ci right 1.418010e-01	k: 26644	n:190000
KS ci ratio: 2.304122e-01	ci left: 1.345876e-03	ci right 1.701191e-03	k: 288	n:190000
GJB3   190000 perm   40 sec   (4701 perm/sec)   p_kst 1.515789e-03   p_cons 1.402316e-01   p_joint 1.515789e-03

Joint ci ratio: 2.027800e-01	ci left: 1.675918e-03	ci right 2.058751e-03	k: 372	n:200000
Cons ci ratio: 2.171262e-02	ci left: 1.386114e-01	ci right 1.416590e-01	k: 28026	n:200000
KS ci ratio: 2.228281e-01	ci left: 1.372909e-03	ci right 1.721794e-03	k: 308	n:200000
GJB3   200000 perm   43 sec   (4630 perm/sec)   p_kst 1.540000e-03   p_cons 1.401300e-01   p_joint 1.860000e-03

Joint ci ratio: 1.772433e-01	ci left: 2.117838e-03	ci right 2.534185e-03	k: 487	n:210000
Cons ci ratio: 2.120164e-02	ci left: 1.385091e-01	ci right 1.414818e-01	k: 29398	n:210000
KS ci ratio: 2.169396e-01	ci left: 1.384028e-03	ci right 1.725206e-03	k: 325	n:210000
GJB3   210000 perm   46 sec   (4557 perm/sec)   p_kst 1.547619e-03   p_cons 1.399905e-01   p_joint 2.319048e-03

Joint ci ratio: 2.130556e-01	ci left: 1.372725e-03	ci right 1.704267e-03	k: 337	n:220000
Cons ci ratio: 2.070987e-02	ci left: 1.385933e-01	ci right 1.414980e-01	k: 30809	n:220000
KS ci ratio: 2.130556e-01	ci left: 1.372725e-03	ci right 1.704267e-03	k: 337	n:220000
GJB3   220000 perm   49 sec   (4489 perm/sec)   p_kst 1.531818e-03   p_cons 1.400409e-01   p_joint 1.531818e-03

Joint ci ratio: 2.064399e-01	ci left: 1.403673e-03	ci right 1.730834e-03	k: 359	n:230000
Cons ci ratio: 2.025847e-02	ci left: 1.385800e-01	ci right 1.414204e-01	k: 32199	n:230000
KS ci ratio: 2.064399e-01	ci left: 1.403673e-03	ci right 1.730834e-03	k: 359	n:230000
GJB3   230000 perm   52 sec   (4421 perm/sec)   p_kst 1.560870e-03   p_cons 1.399957e-01   p_joint 1.560870e-03

Joint ci ratio: 1.659025e-01	ci left: 2.128276e-03	ci right 2.517233e-03	k: 556	n:240000
Cons ci ratio: 1.983193e-02	ci left: 1.386099e-01	ci right 1.413905e-01	k: 33599	n:240000
KS ci ratio: 2.033585e-01	ci left: 1.388667e-03	ci right 1.706899e-03	k: 370	n:240000
GJB3   240000 perm   55 sec   (4356 perm/sec)   p_kst 1.541667e-03   p_cons 1.399958e-01   p_joint 2.316667e-03

Joint ci ratio: 1.732329e-01	ci left: 1.866928e-03	ci right 2.224774e-03	k: 510	n:250000
Cons ci ratio: 1.942608e-02	ci left: 1.387018e-01	ci right 1.414266e-01	k: 35015	n:250000
KS ci ratio: 1.991101e-01	ci left: 1.393896e-03	ci right 1.705843e-03	k: 386	n:250000
GJB3   250000 perm   58 sec   (4295 perm/sec)   p_kst 1.544000e-03   p_cons 1.400600e-01   p_joint 2.040000e-03

Joint ci ratio: 1.583995e-01	ci left: 2.163834e-03	ci right 2.539705e-03	k: 610	n:260000
Cons ci ratio: 1.905847e-02	ci left: 1.386071e-01	ci right 1.412779e-01	k: 36384	n:260000
KS ci ratio: 1.951173e-01	ci left: 1.398787e-03	ci right 1.704805e-03	k: 402	n:260000
GJB3   260000 perm   62 sec   (4224 perm/sec)   p_kst 1.546154e-03   p_cons 1.399385e-01   p_joint 2.346154e-03

Joint ci ratio: 1.559939e-01	ci left: 2.151293e-03	ci right 2.518779e-03	k: 629	n:270000
Cons ci ratio: 1.868107e-02	ci left: 1.389035e-01	ci right 1.415265e-01	k: 37857	n:270000
KS ci ratio: 1.934476e-01	ci left: 1.371643e-03	ci right 1.668852e-03	k: 409	n:270000
GJB3   270000 perm   65 sec   (4164 perm/sec)   p_kst 1.514815e-03   p_cons 1.402111e-01   p_joint 2.329630e-03

Joint ci ratio: 1.532222e-01	ci left: 2.153426e-03	ci right 2.514141e-03	k: 652	n:280000
Cons ci ratio: 1.834285e-02	ci left: 1.389480e-01	ci right 1.415238e-01	k: 39265	n:280000
KS ci ratio: 1.902275e-01	ci left: 1.370254e-03	ci right 1.661649e-03	k: 423	n:280000
GJB3   280000 perm   68 sec   (4102 perm/sec)   p_kst 1.510714e-03   p_cons 1.402321e-01   p_joint 2.328571e-03

Joint ci ratio: 1.502593e-01	ci left: 2.165422e-03	ci right 2.520502e-03	k: 678	n:290000
Cons ci ratio: 1.802185e-02	ci left: 1.389966e-01	ci right 1.415278e-01	k: 40675	n:290000
KS ci ratio: 1.865244e-01	ci left: 1.378861e-03	ci right 1.665732e-03	k: 440	n:290000
GJB3   290000 perm   72 sec   (4038 perm/sec)   p_kst 1.517241e-03   p_cons 1.402586e-01   p_joint 2.337931e-03

Joint ci ratio: 1.834309e-01	ci left: 1.380584e-03	ci right 1.662520e-03	k: 455	n:300000
Cons ci ratio: 1.771445e-02	ci left: 1.390790e-01	ci right 1.415680e-01	k: 42096	n:300000
KS ci ratio: 1.834309e-01	ci left: 1.380584e-03	ci right 1.662520e-03	k: 455	n:300000
GJB3   300000 perm   75 sec   (3983 perm/sec)   p_kst 1.516667e-03   p_cons 1.403200e-01   p_joint 1.516667e-03

Joint ci ratio: 1.808715e-01	ci left: 1.376072e-03	ci right 1.652736e-03	k: 468	n:310000
Cons ci ratio: 1.743904e-02	ci left: 1.389249e-01	ci right 1.413721e-01	k: 43445	n:310000
KS ci ratio: 1.808715e-01	ci left: 1.376072e-03	ci right 1.652736e-03	k: 468	n:310000
GJB3   310000 perm   79 sec   (3928 perm/sec)   p_kst 1.509677e-03   p_cons 1.401452e-01   p_joint 1.509677e-03

Joint ci ratio: 1.776795e-01	ci left: 1.383811e-03	ci right 1.656594e-03	k: 485	n:320000
Cons ci ratio: 1.716494e-02	ci left: 1.389365e-01	ci right 1.413450e-01	k: 44844	n:320000
KS ci ratio: 1.776795e-01	ci left: 1.383811e-03	ci right 1.656594e-03	k: 485	n:320000
GJB3   320000 perm   83 sec   (3871 perm/sec)   p_kst 1.515625e-03   p_cons 1.401375e-01   p_joint 1.515625e-03

Joint ci ratio: 1.746506e-01	ci left: 1.391122e-03	ci right 1.660178e-03	k: 502	n:330000
Cons ci ratio: 1.689531e-02	ci left: 1.390624e-01	ci right 1.414349e-01	k: 46281	n:330000
KS ci ratio: 1.746506e-01	ci left: 1.391122e-03	ci right 1.660178e-03	k: 502	n:330000
GJB3   330000 perm   87 sec   (3807 perm/sec)   p_kst 1.521212e-03   p_cons 1.402455e-01   p_joint 1.521212e-03

Joint ci ratio: 1.717716e-01	ci left: 1.398039e-03	ci right 1.663514e-03	k: 519	n:340000
Cons ci ratio: 1.665342e-02	ci left: 1.389584e-01	ci right 1.412948e-01	k: 47642	n:340000
KS ci ratio: 1.717716e-01	ci left: 1.398039e-03	ci right 1.663514e-03	k: 519	n:340000
GJB3   340000 perm   91 sec   (3751 perm/sec)   p_kst 1.526471e-03   p_cons 1.401235e-01   p_joint 1.526471e-03

Joint ci ratio: 1.687161e-01	ci left: 1.410069e-03	ci right 1.672581e-03	k: 538	n:350000
Cons ci ratio: 1.642748e-02	ci left: 1.387751e-01	ci right 1.410765e-01	k: 48973	n:350000
KS ci ratio: 1.687161e-01	ci left: 1.410069e-03	ci right 1.672581e-03	k: 538	n:350000
GJB3   350000 perm   95 sec   (3703 perm/sec)   p_kst 1.537143e-03   p_cons 1.399229e-01   p_joint 1.537143e-03

Joint ci ratio: 1.661164e-01	ci left: 1.416144e-03	ci right 1.675318e-03	k: 555	n:360000
Cons ci ratio: 1.619608e-02	ci left: 1.388154e-01	ci right 1.410848e-01	k: 50381	n:360000
KS ci ratio: 1.661164e-01	ci left: 1.416144e-03	ci right 1.675318e-03	k: 555	n:360000
GJB3   360000 perm   98 sec   (3655 perm/sec)   p_kst 1.541667e-03   p_cons 1.399472e-01   p_joint 1.541667e-03

Joint ci ratio: 1.467666e-01	ci left: 1.783072e-03	ci right 2.068062e-03	k: 711	n:370000
Cons ci ratio: 1.598460e-02	ci left: 1.386976e-01	ci right 1.409351e-01	k: 51731	n:370000
KS ci ratio: 1.633480e-01	ci left: 1.427105e-03	ci right 1.683505e-03	k: 574	n:370000
GJB3   370000 perm   103 sec   (3609 perm/sec)   p_kst 1.551351e-03   p_cons 1.398135e-01   p_joint 1.921622e-03

Joint ci ratio: 1.523375e-01	ci left: 1.606948e-03	ci right 1.874426e-03	k: 660	n:380000
Cons ci ratio: 1.577566e-02	ci left: 1.386700e-01	ci right 1.408776e-01	k: 53113	n:380000
KS ci ratio: 1.618086e-01	ci left: 1.417319e-03	ci right 1.669327e-03	k: 585	n:380000
GJB3   380000 perm   107 sec   (3562 perm/sec)   p_kst 1.539474e-03   p_cons 1.397711e-01   p_joint 1.736842e-03

Joint ci ratio: 1.505268e-01	ci left: 1.605215e-03	ci right 1.868943e-03	k: 676	n:390000
Cons ci ratio: 1.556608e-02	ci left: 1.387769e-01	ci right 1.409566e-01	k: 54547	n:390000
KS ci ratio: 1.597767e-01	ci left: 1.417891e-03	ci right 1.666532e-03	k: 600	n:390000
GJB3   390000 perm   111 sec   (3515 perm/sec)   p_kst 1.538462e-03   p_cons 1.398641e-01   p_joint 1.733333e-03

Joint ci ratio: 1.484577e-01	ci left: 1.610808e-03	ci right 1.871494e-03	k: 695	n:400000
Cons ci ratio: 1.536686e-02	ci left: 1.388438e-01	ci right 1.409964e-01	k: 55967	n:400000
KS ci ratio: 1.575635e-01	ci left: 1.423257e-03	ci right 1.669054e-03	k: 617	n:400000
GJB3   400000 perm   115 sec   (3472 perm/sec)   p_kst 1.542500e-03   p_cons 1.399175e-01   p_joint 1.737500e-03

Joint ci ratio: 1.560563e-01	ci left: 1.416663e-03	ci right 1.658762e-03	k: 629	n:410000
Cons ci ratio: 1.517788e-02	ci left: 1.388638e-01	ci right 1.409900e-01	k: 57369	n:410000
KS ci ratio: 1.560563e-01	ci left: 1.416663e-03	ci right 1.658762e-03	k: 629	n:410000
GJB3   410000 perm   120 sec   (3430 perm/sec)   p_kst 1.534146e-03   p_cons 1.399244e-01   p_joint 1.534146e-03

Joint ci ratio: 1.245649e-01	ci left: 2.205817e-03	ci right 2.501116e-03	k: 987	n:420000
Cons ci ratio: 1.498665e-02	ci left: 1.390279e-01	ci right 1.411295e-01	k: 58832	n:420000
KS ci ratio: 1.543510e-01	ci left: 1.414971e-03	ci right 1.653895e-03	k: 643	n:420000
GJB3   420000 perm   124 sec   (3388 perm/sec)   p_kst 1.530952e-03   p_cons 1.400762e-01   p_joint 2.350000e-03

Joint ci ratio: 1.528167e-01	ci left: 1.411135e-03	ci right 1.646826e-03	k: 656	n:430000
Cons ci ratio: 1.481119e-02	ci left: 1.390430e-01	ci right 1.411200e-01	k: 60234	n:430000
KS ci ratio: 1.528167e-01	ci left: 1.411135e-03	ci right 1.646826e-03	k: 656	n:430000
GJB3   430000 perm   128 sec   (3346 perm/sec)   p_kst 1.525581e-03   p_cons 1.400791e-01   p_joint 1.525581e-03

Joint ci ratio: 1.043009e-01	ci left: 3.033050e-03	ci right 3.368999e-03	k: 1407	n:440000
Cons ci ratio: 1.463637e-02	ci left: 1.391459e-01	ci right 1.411997e-01	k: 61675	n:440000
KS ci ratio: 1.506532e-01	ci left: 1.420607e-03	ci right 1.654218e-03	k: 675	n:440000
GJB3   440000 perm   133 sec   (3306 perm/sec)   p_kst 1.534091e-03   p_cons 1.401705e-01   p_joint 3.197727e-03

Joint ci ratio: 1.033879e-01	ci left: 3.019761e-03	ci right 3.351132e-03	k: 1432	n:450000
Cons ci ratio: 1.448000e-02	ci left: 1.390384e-01	ci right 1.410685e-01	k: 63023	n:450000
KS ci ratio: 1.494430e-01	ci left: 1.412564e-03	ci right 1.642819e-03	k: 686	n:450000
GJB3   450000 perm   138 sec   (3267 perm/sec)   p_kst 1.524444e-03   p_cons 1.400511e-01   p_joint 3.182222e-03

Joint ci ratio: 1.024632e-01	ci left: 3.009179e-03	ci right 3.336258e-03	k: 1458	n:460000
Cons ci ratio: 1.432466e-02	ci left: 1.390006e-01	ci right 1.410083e-01	k: 64401	n:460000
KS ci ratio: 1.479433e-01	ci left: 1.411159e-03	ci right 1.638672e-03	k: 700	n:460000
GJB3   460000 perm   142 sec   (3228 perm/sec)   p_kst 1.521739e-03   p_cons 1.400022e-01   p_joint 3.169565e-03

Joint ci ratio: 1.015286e-01	ci left: 3.001135e-03	ci right 3.324187e-03	k: 1485	n:470000
Cons ci ratio: 1.416745e-02	ci left: 1.390792e-01	ci right 1.410657e-01	k: 65833	n:470000
KS ci ratio: 1.463855e-01	ci left: 1.411874e-03	ci right 1.636896e-03	k: 715	n:470000
GJB3   470000 perm   147 sec   (3192 perm/sec)   p_kst 1.521277e-03   p_cons 1.400702e-01   p_joint 3.159574e-03

Joint ci ratio: 1.005525e-01	ci left: 2.997501e-03	ci right 3.316876e-03	k: 1514	n:480000
Cons ci ratio: 1.402051e-02	ci left: 1.390652e-01	ci right 1.410308e-01	k: 67222	n:480000
KS ci ratio: 1.450747e-01	ci left: 1.408555e-03	ci right 1.630865e-03	k: 728	n:480000
GJB3   480000 perm   152 sec   (3156 perm/sec)   p_kst 1.516667e-03   p_cons 1.400458e-01   p_joint 3.154167e-03

Joint ci ratio: 9.928196e-02	ci left: 3.013932e-03	ci right 3.330763e-03	k: 1553	n:490000
Cons ci ratio: 1.387712e-02	ci left: 1.390682e-01	ci right 1.410136e-01	k: 68619	n:490000
KS ci ratio: 1.433158e-01	ci left: 1.415219e-03	ci right 1.635640e-03	k: 746	n:490000
GJB3   490000 perm   157 sec   (3120 perm/sec)   p_kst 1.522449e-03   p_cons 1.400388e-01   p_joint 3.169388e-03

Joint ci ratio: 9.818214e-02	ci left: 3.021925e-03	ci right 3.335875e-03	k: 1588	n:500000
Cons ci ratio: 1.374078e-02	ci left: 1.390234e-01	ci right 1.409488e-01	k: 69992	n:500000
KS ci ratio: 1.416193e-01	ci left: 1.421632e-03	ci right 1.640209e-03	k: 764	n:500000
GJB3   500000 perm   162 sec   (3082 perm/sec)   p_kst 1.528000e-03   p_cons 1.399840e-01   p_joint 3.176000e-03

Joint ci ratio: 9.696844e-02	ci left: 3.039190e-03	ci right 3.350809e-03	k: 1628	n:510000
Cons ci ratio: 1.360161e-02	ci left: 1.390996e-01	ci right 1.410065e-01	k: 71426	n:510000
KS ci ratio: 1.398029e-01	ci left: 1.431592e-03	ci right 1.648643e-03	k: 784	n:510000
GJB3   510000 perm   167 sec   (3048 perm/sec)   p_kst 1.537255e-03   p_cons 1.400510e-01   p_joint 3.192157e-03

Joint ci ratio: 9.600083e-02	ci left: 3.042675e-03	ci right 3.351363e-03	k: 1661	n:520000
Cons ci ratio: 1.346606e-02	ci left: 1.391826e-01	ci right 1.410714e-01	k: 72865	n:520000
KS ci ratio: 1.385729e-01	ci left: 1.430047e-03	ci right 1.644799e-03	k: 798	n:520000
GJB3   520000 perm   173 sec   (3014 perm/sec)   p_kst 1.534615e-03   p_cons 1.401250e-01   p_joint 3.194231e-03

Joint ci ratio: 1.111003e-01	ci left: 2.213172e-03	ci right 2.475335e-03	k: 1241	n:530000
Cons ci ratio: 1.333771e-02	ci left: 1.392042e-01	ci right 1.410752e-01	k: 74273	n:530000
KS ci ratio: 1.372902e-01	ci left: 1.430390e-03	ci right 1.643043e-03	k: 813	n:530000
GJB3   530000 perm   178 sec   (2985 perm/sec)   p_kst 1.533962e-03   p_cons 1.401377e-01   p_joint 2.341509e-03

Joint ci ratio: 1.100858e-01	ci left: 2.213601e-03	ci right 2.473265e-03	k: 1264	n:540000
Cons ci ratio: 1.321287e-02	ci left: 1.392270e-01	ci right 1.410806e-01	k: 75682	n:540000
KS ci ratio: 1.362072e-01	ci left: 1.427152e-03	ci right 1.637513e-03	k: 826	n:540000
GJB3   540000 perm   183 sec   (2953 perm/sec)   p_kst 1.529630e-03   p_cons 1.401519e-01   p_joint 2.340741e-03

Joint ci ratio: 1.091409e-01	ci left: 2.212257e-03	ci right 2.469393e-03	k: 1286	n:550000
Cons ci ratio: 1.309670e-02	ci left: 1.391529e-01	ci right 1.409891e-01	k: 77038	n:550000
KS ci ratio: 1.349886e-01	ci left: 1.427551e-03	ci right 1.635938e-03	k: 841	n:550000
GJB3   550000 perm   188 sec   (2919 perm/sec)   p_kst 1.529091e-03   p_cons 1.400691e-01   p_joint 2.338182e-03

Joint ci ratio: 1.081373e-01	ci left: 2.214446e-03	ci right 2.469318e-03	k: 1310	n:560000
Cons ci ratio: 1.297536e-02	ci left: 1.392329e-01	ci right 1.410530e-01	k: 78479	n:560000
KS ci ratio: 1.341159e-01	ci left: 1.421041e-03	ci right 1.627029e-03	k: 852	n:560000
GJB3   560000 perm   194 sec   (2890 perm/sec)   p_kst 1.521429e-03   p_cons 1.401411e-01   p_joint 2.339286e-03

Joint ci ratio: 1.072413e-01	ci left: 2.213152e-03	ci right 2.465633e-03	k: 1332	n:570000
Cons ci ratio: 1.285967e-02	ci left: 1.392664e-01	ci right 1.410706e-01	k: 79895	n:570000
KS ci ratio: 1.331057e-01	ci left: 1.418155e-03	ci right 1.622053e-03	k: 865	n:570000
GJB3   570000 perm   200 sec   (2856 perm/sec)   p_kst 1.517544e-03   p_cons 1.401667e-01   p_joint 2.336842e-03

Joint ci ratio: 1.060930e-01	ci left: 2.223661e-03	ci right 2.474454e-03	k: 1361	n:580000
Cons ci ratio: 1.274584e-02	ci left: 1.393212e-01	ci right 1.411100e-01	k: 81324	n:580000
KS ci ratio: 1.317432e-01	ci left: 1.423710e-03	ci right 1.626149e-03	k: 883	n:580000
GJB3   580000 perm   205 sec   (2829 perm/sec)   p_kst 1.522414e-03   p_cons 1.402138e-01   p_joint 2.346552e-03

Joint ci ratio: 1.051324e-01	ci left: 2.227226e-03	ci right 2.476006e-03	k: 1386	n:590000
Cons ci ratio: 1.264129e-02	ci left: 1.392541e-01	ci right 1.410274e-01	k: 82682	n:590000
KS ci ratio: 1.304943e-01	ci left: 1.427448e-03	ci right 1.628345e-03	k: 900	n:590000
GJB3   590000 perm   211 sec   (2800 perm/sec)   p_kst 1.525424e-03   p_cons 1.401390e-01   p_joint 2.349153e-03

Joint ci ratio: 1.042714e-01	ci left: 2.227435e-03	ci right 2.474076e-03	k: 1409	n:600000
Cons ci ratio: 1.253831e-02	ci left: 1.392077e-01	ci right 1.409658e-01	k: 84051	n:600000
KS ci ratio: 1.294214e-01	ci left: 1.427845e-03	ci right 1.627018e-03	k: 915	n:600000
GJB3   600000 perm   216 sec   (2774 perm/sec)   p_kst 1.525000e-03   p_cons 1.400850e-01   p_joint 2.348333e-03

Joint ci ratio: 1.207544e-01	ci left: 1.620429e-03	ci right 1.830250e-03	k: 1051	n:610000
Cons ci ratio: 1.243409e-02	ci left: 1.392348e-01	ci right 1.409785e-01	k: 85464	n:610000
KS ci ratio: 1.282368e-01	ci left: 1.431408e-03	ci right 1.629112e-03	k: 932	n:610000
GJB3   610000 perm   222 sec   (2747 perm/sec)   p_kst 1.527869e-03   p_cons 1.401049e-01   p_joint 1.722951e-03

Joint ci ratio: 1.198466e-01	ci left: 1.619323e-03	ci right 1.827312e-03	k: 1067	n:620000
Cons ci ratio: 1.233036e-02	ci left: 1.393013e-01	ci right 1.410311e-01	k: 86902	n:620000
KS ci ratio: 1.271511e-01	ci left: 1.433303e-03	ci right 1.629466e-03	k: 948	n:620000
GJB3   620000 perm   228 sec   (2720 perm/sec)   p_kst 1.529032e-03   p_cons 1.401645e-01   p_joint 1.720968e-03

Joint ci ratio: 1.189590e-01	ci left: 1.618258e-03	ci right 1.824462e-03	k: 1083	n:630000
Cons ci ratio: 1.223208e-02	ci left: 1.393087e-01	ci right 1.410248e-01	k: 88304	n:630000
KS ci ratio: 1.261580e-01	ci left: 1.433608e-03	ci right 1.628165e-03	k: 963	n:630000
GJB3   630000 perm   234 sec   (2694 perm/sec)   p_kst 1.528571e-03   p_cons 1.401651e-01   p_joint 1.719048e-03

Joint ci ratio: 1.181984e-01	ci left: 1.614199e-03	ci right 1.818479e-03	k: 1097	n:640000
Cons ci ratio: 1.213556e-02	ci left: 1.393269e-01	ci right 1.410295e-01	k: 89713	n:640000
KS ci ratio: 1.253803e-01	ci left: 1.429367e-03	ci right 1.622065e-03	k: 975	n:640000
GJB3   640000 perm   240 sec   (2667 perm/sec)   p_kst 1.523438e-03   p_cons 1.401766e-01   p_joint 1.714063e-03

Joint ci ratio: 1.178778e-01	ci left: 1.598322e-03	ci right 1.800007e-03	k: 1103	n:650000
Cons ci ratio: 1.203976e-02	ci left: 1.393752e-01	ci right 1.410649e-01	k: 91142	n:650000
KS ci ratio: 1.250614e-01	ci left: 1.414828e-03	ci right 1.605044e-03	k: 980	n:650000
GJB3   650000 perm   246 sec   (2642 perm/sec)   p_kst 1.507692e-03   p_cons 1.402185e-01   p_joint 1.696923e-03

Joint ci ratio: 1.164614e-01	ci left: 1.613816e-03	ci right 1.814840e-03	k: 1130	n:660000
Cons ci ratio: 1.194979e-02	ci left: 1.393496e-01	ci right 1.410263e-01	k: 92523	n:660000
KS ci ratio: 1.234353e-01	ci left: 1.431561e-03	ci right 1.621342e-03	k: 1006	n:660000
GJB3   660000 perm   252 sec   (2618 perm/sec)   p_kst 1.524242e-03   p_cons 1.401864e-01   p_joint 1.712121e-03

Joint ci ratio: 1.157475e-01	ci left: 1.610018e-03	ci right 1.809256e-03	k: 1144	n:670000
Cons ci ratio: 1.185594e-02	ci left: 1.394439e-01	ci right 1.411085e-01	k: 93984	n:670000
KS ci ratio: 1.226464e-01	ci left: 1.429000e-03	ci right 1.617143e-03	k: 1019	n:670000
GJB3   670000 perm   258 sec   (2594 perm/sec)   p_kst 1.520896e-03   p_cons 1.402746e-01   p_joint 1.707463e-03

Joint ci ratio: 1.151461e-01	ci left: 1.603478e-03	ci right 1.800806e-03	k: 1156	n:680000
Cons ci ratio: 1.176807e-02	ci left: 1.394577e-01	ci right 1.411100e-01	k: 95392	n:680000
KS ci ratio: 1.220501e-01	ci left: 1.422241e-03	ci right 1.608517e-03	k: 1029	n:680000
GJB3   680000 perm   265 sec   (2569 perm/sec)   p_kst 1.513235e-03   p_cons 1.402824e-01   p_joint 1.700000e-03

Joint ci ratio: 1.146031e-01	ci left: 1.595723e-03	ci right 1.791107e-03	k: 1167	n:690000
Cons ci ratio: 1.168121e-02	ci left: 1.394900e-01	ci right 1.411304e-01	k: 96813	n:690000
KS ci ratio: 1.214039e-01	ci left: 1.417085e-03	ci right 1.601633e-03	k: 1040	n:690000
GJB3   690000 perm   271 sec   (2547 perm/sec)   p_kst 1.507246e-03   p_cons 1.403087e-01   p_joint 1.691304e-03

Joint ci ratio: 1.141162e-01	ci left: 1.586804e-03	ci right 1.780215e-03	k: 1177	n:700000
Cons ci ratio: 1.160050e-02	ci left: 1.394330e-01	ci right 1.410614e-01	k: 98172	n:700000
KS ci ratio: 1.209407e-01	ci left: 1.407923e-03	ci right 1.590528e-03	k: 1048	n:700000
GJB3   700000 perm   278 sec   (2522 perm/sec)   p_kst 1.497143e-03   p_cons 1.402457e-01   p_joint 1.681429e-03

Joint ci ratio: 1.132067e-01	ci left: 1.590454e-03	ci right 1.782662e-03	k: 1196	n:710000
Cons ci ratio: 1.151996e-02	ci left: 1.394086e-01	ci right 1.410253e-01	k: 99553	n:710000
KS ci ratio: 1.199160e-01	ci left: 1.412682e-03	ci right 1.594241e-03	k: 1066	n:710000
GJB3   710000 perm   284 sec   (2498 perm/sec)   p_kst 1.501408e-03   p_cons 1.402155e-01   p_joint 1.684507e-03

Joint ci ratio: 1.121341e-01	ci left: 1.599409e-03	ci right 1.790747e-03	k: 1219	n:720000
Cons ci ratio: 1.144068e-02	ci left: 1.393932e-01	ci right 1.409985e-01	k: 100940	n:720000
KS ci ratio: 1.186979e-01	ci left: 1.422705e-03	ci right 1.603566e-03	k: 1088	n:720000
GJB3   720000 perm   291 sec   (2476 perm/sec)   p_kst 1.511111e-03   p_cons 1.401944e-01   p_joint 1.693056e-03

Joint ci ratio: 1.114512e-01	ci left: 1.597473e-03	ci right 1.787338e-03	k: 1234	n:730000
Cons ci ratio: 1.136392e-02	ci left: 1.393592e-01	ci right 1.409533e-01	k: 102313	n:730000
KS ci ratio: 1.178888e-01	ci left: 1.423156e-03	ci right 1.602755e-03	k: 1103	n:730000
GJB3   730000 perm   297 sec   (2455 perm/sec)   p_kst 1.510959e-03   p_cons 1.401548e-01   p_joint 1.690411e-03

Joint ci ratio: 1.106919e-01	ci left: 1.598220e-03	ci right 1.786796e-03	k: 1251	n:740000
Cons ci ratio: 1.128963e-02	ci left: 1.393059e-01	ci right 1.408888e-01	k: 103671	n:740000
KS ci ratio: 1.170960e-01	ci left: 1.423599e-03	ci right 1.601962e-03	k: 1118	n:740000
GJB3   740000 perm   304 sec   (2434 perm/sec)   p_kst 1.510811e-03   p_cons 1.400959e-01   p_joint 1.690541e-03

Joint ci ratio: 1.099046e-01	ci left: 1.600249e-03	ci right 1.787634e-03	k: 1269	n:750000
Cons ci ratio: 1.121610e-02	ci left: 1.392686e-01	ci right 1.408408e-01	k: 105040	n:750000
KS ci ratio: 1.161652e-01	ci left: 1.427918e-03	ci right 1.605302e-03	k: 1136	n:750000
GJB3   750000 perm   311 sec   (2415 perm/sec)   p_kst 1.514667e-03   p_cons 1.400533e-01   p_joint 1.692000e-03

Joint ci ratio: 9.349088e-02	ci left: 2.199971e-03	ci right 2.417008e-03	k: 1753	n:760000
Cons ci ratio: 1.114374e-02	ci left: 1.392377e-01	ci right 1.407993e-01	k: 106413	n:760000
KS ci ratio: 1.155573e-01	ci left: 1.424461e-03	ci right 1.600426e-03	k: 1148	n:760000
GJB3   760000 perm   317 sec   (2396 perm/sec)   p_kst 1.510526e-03   p_cons 1.400171e-01   p_joint 2.306579e-03

Joint ci ratio: 9.270105e-02	ci left: 2.209454e-03	ci right 2.425486e-03	k: 1783	n:770000
Cons ci ratio: 1.106859e-02	ci left: 1.392982e-01	ci right 1.408499e-01	k: 107856	n:770000
KS ci ratio: 1.142708e-01	ci left: 1.438758e-03	ci right 1.614377e-03	k: 1174	n:770000
GJB3   770000 perm   324 sec   (2376 perm/sec)   p_kst 1.524675e-03   p_cons 1.400727e-01   p_joint 2.315584e-03

Joint ci ratio: 9.231426e-02	ci left: 2.199913e-03	ci right 2.414066e-03	k: 1798	n:780000
Cons ci ratio: 1.099628e-02	ci left: 1.393279e-01	ci right 1.408697e-01	k: 109276	n:780000
KS ci ratio: 1.138361e-01	ci left: 1.431521e-03	ci right 1.605548e-03	k: 1183	n:780000
GJB3   780000 perm   331 sec   (2356 perm/sec)   p_kst 1.516667e-03   p_cons 1.400974e-01   p_joint 2.305128e-03

Joint ci ratio: 9.167933e-02	ci left: 2.202984e-03	ci right 2.415881e-03	k: 1823	n:790000
Cons ci ratio: 1.092744e-02	ci left: 1.393113e-01	ci right 1.408432e-01	k: 110660	n:790000
KS ci ratio: 1.130274e-01	ci left: 1.434309e-03	ci right 1.607354e-03	k: 1200	n:790000
GJB3   790000 perm   339 sec   (2333 perm/sec)   p_kst 1.518987e-03   p_cons 1.400759e-01   p_joint 2.307595e-03

Joint ci ratio: 9.113145e-02	ci left: 2.202318e-03	ci right 2.413811e-03	k: 1845	n:800000
Cons ci ratio: 1.085514e-02	ci left: 1.394000e-01	ci right 1.409226e-01	k: 112128	n:800000
KS ci ratio: 1.122819e-01	ci left: 1.435817e-03	ci right 1.607825e-03	k: 1216	n:800000
GJB3   800000 perm   346 sec   (2314 perm/sec)   p_kst 1.520000e-03   p_cons 1.401600e-01   p_joint 2.306250e-03

Joint ci ratio: 9.054471e-02	ci left: 2.204086e-03	ci right 2.414314e-03	k: 1869	n:810000
Cons ci ratio: 1.078774e-02	ci left: 1.394089e-01	ci right 1.409221e-01	k: 113533	n:810000
KS ci ratio: 1.114605e-01	ci left: 1.439691e-03	ci right 1.610819e-03	k: 1234	n:810000
GJB3   810000 perm   353 sec   (2296 perm/sec)   p_kst 1.523457e-03   p_cons 1.401642e-01   p_joint 2.307407e-03

Joint ci ratio: 7.718855e-02	ci left: 3.014313e-03	ci right 3.257510e-03	k: 2570	n:820000
Cons ci ratio: 1.072662e-02	ci left: 1.393044e-01	ci right 1.408079e-01	k: 114845	n:820000
KS ci ratio: 1.106126e-01	ci left: 1.444661e-03	ci right 1.614989e-03	k: 1253	n:820000
GJB3   820000 perm   360 sec   (2278 perm/sec)   p_kst 1.528049e-03   p_cons 1.400549e-01   p_joint 3.134146e-03

Joint ci ratio: 7.666828e-02	ci left: 3.019354e-03	ci right 3.261243e-03	k: 2605	n:830000
Cons ci ratio: 1.066205e-02	ci left: 1.393035e-01	ci right 1.407979e-01	k: 116241	n:830000
KS ci ratio: 1.099570e-01	ci left: 1.444830e-03	ci right 1.614101e-03	k: 1268	n:830000
GJB3   830000 perm   367 sec   (2260 perm/sec)   p_kst 1.527711e-03   p_cons 1.400494e-01   p_joint 3.138554e-03

Joint ci ratio: 7.617287e-02	ci left: 3.023112e-03	ci right 3.263668e-03	k: 2639	n:840000
Cons ci ratio: 1.060209e-02	ci left: 1.392242e-01	ci right 1.407093e-01	k: 117571	n:840000
KS ci ratio: 1.093128e-01	ci left: 1.444997e-03	ci right 1.613233e-03	k: 1283	n:840000
GJB3   840000 perm   375 sec   (2242 perm/sec)   p_kst 1.527381e-03   p_cons 1.399655e-01   p_joint 3.141667e-03

Joint ci ratio: 7.571534e-02	ci left: 3.024478e-03	ci right 3.263633e-03	k: 2671	n:850000
Cons ci ratio: 1.054066e-02	ci left: 1.392031e-01	ci right 1.406793e-01	k: 118949	n:850000
KS ci ratio: 1.085962e-01	ci left: 1.447452e-03	ci right 1.614798e-03	k: 1300	n:850000
GJB3   850000 perm   382 sec   (2224 perm/sec)   p_kst 1.529412e-03   p_cons 1.399400e-01   p_joint 3.142353e-03

Joint ci ratio: 7.529391e-02	ci left: 3.023535e-03	ci right 3.261227e-03	k: 2701	n:860000
Cons ci ratio: 1.047532e-02	ci left: 1.392963e-01	ci right 1.407643e-01	k: 120425	n:860000
KS ci ratio: 1.079755e-01	ci left: 1.447591e-03	ci right 1.613935e-03	k: 1315	n:860000
GJB3   860000 perm   390 sec   (2207 perm/sec)   p_kst 1.529070e-03   p_cons 1.400291e-01   p_joint 3.140698e-03

Joint ci ratio: 7.493448e-02	ci left: 3.018105e-03	ci right 3.254188e-03	k: 2727	n:870000
Cons ci ratio: 1.041630e-02	ci left: 1.392692e-01	ci right 1.407286e-01	k: 121798	n:870000
KS ci ratio: 1.074868e-01	ci left: 1.444373e-03	ci right 1.609549e-03	k: 1327	n:870000
GJB3   870000 perm   397 sec   (2189 perm/sec)   p_kst 1.525287e-03   p_cons 1.399977e-01   p_joint 3.134483e-03

Joint ci ratio: 7.460732e-02	ci left: 3.010571e-03	ci right 3.244991e-03	k: 2751	n:880000
Cons ci ratio: 1.035876e-02	ci left: 1.392314e-01	ci right 1.406823e-01	k: 123161	n:880000
KS ci ratio: 1.070847e-01	ci left: 1.439018e-03	ci right 1.602928e-03	k: 1337	n:880000
GJB3   880000 perm   405 sec   (2173 perm/sec)   p_kst 1.519318e-03   p_cons 1.399557e-01   p_joint 3.126136e-03

Joint ci ratio: 7.424419e-02	ci left: 3.006516e-03	ci right 3.239433e-03	k: 2778	n:890000
Cons ci ratio: 1.030168e-02	ci left: 1.392057e-01	ci right 1.406483e-01	k: 124534	n:890000
KS ci ratio: 1.064894e-01	ci left: 1.439253e-03	ci right 1.602221e-03	k: 1352	n:890000
GJB3   890000 perm   413 sec   (2157 perm/sec)   p_kst 1.519101e-03   p_cons 1.399258e-01   p_joint 3.121348e-03

Joint ci ratio: 7.378087e-02	ci left: 3.011280e-03	ci right 3.243047e-03	k: 2813	n:900000
Cons ci ratio: 1.024297e-02	ci left: 1.392405e-01	ci right 1.406752e-01	k: 125961	n:900000
KS ci ratio: 1.057493e-01	ci left: 1.443812e-03	ci right 1.606090e-03	k: 1371	n:900000
GJB3   900000 perm   420 sec   (2141 perm/sec)   p_kst 1.523333e-03   p_cons 1.399567e-01   p_joint 3.125556e-03

Joint ci ratio: 7.339075e-02	ci left: 3.010549e-03	ci right 3.240983e-03	k: 2843	n:910000
Cons ci ratio: 1.018805e-02	ci left: 1.392087e-01	ci right 1.406353e-01	k: 127328	n:910000
KS ci ratio: 1.051380e-01	ci left: 1.445065e-03	ci right 1.606486e-03	k: 1387	n:910000
GJB3   910000 perm   428 sec   (2124 perm/sec)   p_kst 1.524176e-03   p_cons 1.399209e-01   p_joint 3.124176e-03

Joint ci ratio: 7.313450e-02	ci left: 2.999166e-03	ci right 3.227893e-03	k: 2863	n:920000
Cons ci ratio: 1.013163e-02	ci left: 1.392341e-01	ci right 1.406530e-01	k: 128747	n:920000
KS ci ratio: 1.046118e-01	ci left: 1.444176e-03	ci right 1.604641e-03	k: 1401	n:920000
GJB3   920000 perm   436 sec   (2108 perm/sec)   p_kst 1.522826e-03   p_cons 1.399424e-01   p_joint 3.111957e-03

Joint ci ratio: 7.275449e-02	ci left: 2.998587e-03	ci right 3.226031e-03	k: 2893	n:930000
Cons ci ratio: 1.007505e-02	ci left: 1.392846e-01	ci right 1.406961e-01	k: 130190	n:930000
KS ci ratio: 1.040934e-01	ci left: 1.443308e-03	ci right 1.602833e-03	k: 1415	n:930000
GJB3   930000 perm   444 sec   (2094 perm/sec)   p_kst 1.521505e-03   p_cons 1.399892e-01   p_joint 3.110753e-03

Joint ci ratio: 7.229359e-02	ci left: 3.005335e-03	ci right 3.231786e-03	k: 2930	n:940000
Cons ci ratio: 1.002056e-02	ci left: 1.393066e-01	ci right 1.407106e-01	k: 131607	n:940000
KS ci ratio: 1.035464e-01	ci left: 1.443497e-03	ci right 1.602153e-03	k: 1430	n:940000
GJB3   940000 perm   452 sec   (2078 perm/sec)   p_kst 1.521277e-03   p_cons 1.400074e-01   p_joint 3.117021e-03

Joint ci ratio: 7.192647e-02	ci left: 3.004710e-03	ci right 3.229916e-03	k: 2960	n:950000
Cons ci ratio: 9.965242e-03	ci left: 1.393690e-01	ci right 1.407658e-01	k: 133063	n:950000
KS ci ratio: 1.029367e-01	ci left: 1.445735e-03	ci right 1.603645e-03	k: 1447	n:950000
GJB3   950000 perm   461 sec   (2060 perm/sec)   p_kst 1.523158e-03   p_cons 1.400663e-01   p_joint 3.115789e-03

Joint ci ratio: 7.146908e-02	ci left: 3.012285e-03	ci right 3.236563e-03	k: 2998	n:960000
Cons ci ratio: 9.913018e-03	ci left: 1.393771e-01	ci right 1.407667e-01	k: 134468	n:960000
KS ci ratio: 1.023027e-01	ci left: 1.448944e-03	ci right 1.606171e-03	k: 1465	n:960000
GJB3   960000 perm   469 sec   (2046 perm/sec)   p_kst 1.526042e-03   p_cons 1.400708e-01   p_joint 3.122917e-03

Joint ci ratio: 7.107902e-02	ci left: 3.014645e-03	ci right 3.237823e-03	k: 3031	n:970000
Cons ci ratio: 9.862620e-03	ci left: 1.393605e-01	ci right 1.407427e-01	k: 135849	n:970000
KS ci ratio: 1.017145e-01	ci left: 1.451085e-03	ci right 1.607586e-03	k: 1482	n:970000
GJB3   970000 perm   478 sec   (2031 perm/sec)   p_kst 1.527835e-03   p_cons 1.400505e-01   p_joint 3.124742e-03

Joint ci ratio: 7.071843e-02	ci left: 3.014955e-03	ci right 3.236978e-03	k: 3062	n:980000
Cons ci ratio: 9.811320e-03	ci left: 1.393848e-01	ci right 1.407601e-01	k: 137270	n:980000
KS ci ratio: 1.011364e-01	ci left: 1.453185e-03	ci right 1.608968e-03	k: 1499	n:980000
GJB3   980000 perm   486 sec   (2016 perm/sec)   p_kst 1.529592e-03   p_cons 1.400714e-01   p_joint 3.124490e-03

Joint ci ratio: 7.031768e-02	ci left: 3.019231e-03	ci right 3.240258e-03	k: 3097	n:990000
Cons ci ratio: 9.761345e-03	ci left: 1.393957e-01	ci right 1.407640e-01	k: 138678	n:990000
KS ci ratio: 1.005017e-01	ci left: 1.457215e-03	ci right 1.612392e-03	k: 1518	n:990000
GJB3   990000 perm   495 sec   (2001 perm/sec)   p_kst 1.533333e-03   p_cons 1.400788e-01   p_joint 3.128283e-03

Joint ci ratio: 8.171481e-02	ci left: 2.202158e-03	ci right 2.390744e-03	k: 2295	n:1000000
Cons ci ratio: 9.712810e-03	ci left: 1.393893e-01	ci right 1.407508e-01	k: 140069	n:1000000
KS ci ratio: 1.001400e-01	ci left: 1.453366e-03	ci right 1.607544e-03	k: 1529	n:1000000
GJB3   1000000 perm   503 sec   (1988 perm/sec)   p_kst 1.529000e-03   p_cons 1.400690e-01   p_joint 2.295000e-03

Joint ci ratio: 6.975745e-02	ci left: 3.008082e-03	ci right 3.226466e-03	k: 3147	n:1010000
Cons ci ratio: 9.663841e-03	ci left: 1.394118e-01	ci right 1.407665e-01	k: 141489	n:1010000
KS ci ratio: 9.968504e-02	ci left: 1.452492e-03	ci right 1.605835e-03	k: 1543	n:1010000
GJB3   1010000 perm   512 sec   (1974 perm/sec)   p_kst 1.527723e-03   p_cons 1.400881e-01   p_joint 3.115842e-03

Outputting figure to mutsig2_images.part000000000070/GJB3.2_817_1010000_0.0015277_0.14009_0.0031158.png
                gene_name: GJB3
               theta_stop: 0.100 
                    nperm: 1010000 
                     p_ks: 0.0015 
        ci_ks_bounds_left: 0.0015 
       ci_ks_bounds_right: 0.0016 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.0031 
     ci_joint_bounds_left: 0.0030 
    ci_joint_bounds_right: 0.0032 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000070
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 70 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1727>
Subject: Job 9877203: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1727>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000071> was used as the working directory.
Started at Fri Oct  5 22:41:11 2012
Results reported at Fri Oct  5 22:42:13 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000071.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000071.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 71  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000071.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     54.09 sec.
    Max Memory :       886 MB
    Max Swap   :      3647 MB

    Max Processes  :         7
    Max Threads    :        67

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
71
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 71
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 71: processing genes 6348 - 6438
Calculating significance of each gene.
Using projection method.
6348	GJB5	1
6349	GJB6	1
6350	GJB7	1
6351	GJC1	1
6352	GJC2	1
6353	GJC3	1
6354	GJD2	1
6355	GJD4	1
6356	GK	1
6357	GK2	1
6358	GK5	1
6359	GKAP1	1
6360	GKN1	1
6361	GKN2	1
6362	GLA	1
6363	GLB1	1
6364	GLB1L	1
6365	GLB1L2	1
6366	GLB1L3	1
6367	GLCCI1	1
6368	GLCE	1
6369	GLDC	1
6370	GLDN	1
6371	GLE1	1
6372	GLG1	1
6373	GLI1	3.298007e-01
6374	GLI2	1
6375	GLI3	3.472107e-01
6376	GLI4	1
6377	GLIPR1	1
6378	GLIPR1L1	1
6379	GLIPR1L2	1
6380	GLIPR2	1
6381	GLIS1	1
6382	GLIS2	8.662848e-02
6383	GLIS3	1.693401e-01
6384	GLMN	1
6385	GLO1	1
6386	GLOD4	9.115261e-02
6387	GLOD5	1
6388	GLP1R	1
6389	GLP2R	1.596099e-01
6390	GLRA1	1
6391	GLRA2	3.273574e-02
6392	GLRA3	1
6393	GLRA4	1
6394	GLRB	1
6395	GLRX	1
6396	GLRX2	1
6397	GLRX3	1
6398	GLRX5	1
6399	GLS	1
6400	GLS2	1
6401	GLT1D1	1
6402	GLT25D1	1
6403	GLT25D2	1
6404	GLT6D1	1
6405	GLT8D1	1
6406	GLT8D2	1
6407	GLTP	1
6408	GLTPD1	1
6409	GLTPD2	1
6410	GLTSCR1	9.653656e-03
6411	GLTSCR2	9.569950e-02
6412	GLUD1	1
6413	GLUD2	1
6414	GLUL	1
6415	GLYAT	1
6416	GLYATL1	1
6417	GLYATL2	1
6418	GLYCTK	1
6419	GLYR1	1
6420	GM2A	1
6421	GMCL1	1
6422	GMDS	1
6423	GMEB1	1
6424	GMEB2	1
6425	GMFB	1
6426	GMFG	1
6427	GMIP	1
6428	GML	1
6429	GMNN	1
6430	GMPPA	1
6431	GMPPB	1
6432	GMPR	1
6433	GMPR2	1
6434	GMPS	1
6435	GNA11	1
6436	GNA12	1
6437	GNA13	1
6438	GNA14	1
Done

Running MutSig 2:
Scatter job 71: processing genes 6348 - 6438
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
GLTSCR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.530113e-02	ci left: 6.968606e-01	ci right 7.148193e-01	k: 7059	n:10000
KS ci ratio: 1.219629e-02	ci left: 9.060712e-01	ci right 9.172877e-01	k: 9118	n:10000
GLTSCR1   10000 perm   2 sec   (5661 perm/sec)   p_kst 9.118000e-01   p_cons 7.059000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000071/GLTSCR1.2_4735_10000_0.9118_0.7059_1.png
                gene_name: GLTSCR1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000071
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 71 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1647>
Subject: Job 9877209: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1647>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000072> was used as the working directory.
Started at Fri Oct  5 22:41:34 2012
Results reported at Sat Oct  6 00:08:55 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000072.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000072.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 72  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000072.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   5324.83 sec.
    Max Memory :      2064 MB
    Max Swap   :      4712 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
72
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 72
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 72: processing genes 6439 - 6528
Calculating significance of each gene.
Using projection method.
6439	GNA15	1
6440	GNAI1	1
6441	GNAI2	1
6442	GNAI3	1
6443	GNAL	1
6444	GNAO1	2.927949e-02
6445	GNAQ	4.443584e-02
6446	GNAS	1
6447	GNAT1	1
6448	GNAT2	1
6449	GNAT3	1
6450	GNAZ	1
6451	GNB1	1
6452	GNB1L	1.092539e-01
6453	GNB2	1
6454	GNB2L1	1
6455	GNB3	1.540682e-02
6456	GNB4	1
6457	GNB5	1.265043e-01
6458	GNE	1
6459	GNG10	1
6460	GNG11	1
6461	GNG12	1
6462	GNG13	1
6463	GNG2	1
6464	GNG3	1
6465	GNG4	1
6466	GNG5	1
6467	GNG7	1
6468	GNG8	1
6469	GNGT1	1
6470	GNGT2	1
6471	GNL1	1
6472	GNL2	1
6473	GNL3	1
6474	GNL3L	1
6475	GNLY	1
6476	GNMT	1
6477	GNPAT	1.064259e-01
6478	GNPDA1	1
6479	GNPDA2	1
In gene GNPNAT1 the following bins exceed PROBCAP:
    PRAD-EJ-5510	categ 6	N = 575     n = 1	mu =   1.34e-07
6480	GNPNAT1	6.963155e-03
6481	GNPTAB	1
6482	GNPTG	1
6483	GNRH1	1
6484	GNRH2	1
6485	GNRHR	1
6486	GNS	1
6487	GOLGA1	1
6488	GOLGA2	3.191160e-01
6489	GOLGA2B	1
6490	GOLGA3	1.551086e-01
6491	GOLGA4	1
6492	GOLGA5	1.422890e-01
6493	GOLGA6A	1
6494	GOLGA6B	1.038161e-03
6495	GOLGA6C	1
6496	GOLGA6D	1
6497	GOLGA7	1
6498	GOLGA7B	1
6499	GOLGB1	2.960779e-01
6500	GOLIM4	1
6501	GOLM1	1
6502	GOLPH3	1
6503	GOLPH3L	1
6504	GOLT1A	1
6505	GOLT1B	1
6506	GON4L	1
6507	GOPC	1
6508	GORAB	1
6509	GORASP1	1
6510	GORASP2	1
6511	GOSR1	1
6512	GOSR2	1
6513	GOT1	1.143006e-01
6514	GOT1L1	6.197024e-02
6515	GOT2	1.293754e-01
6516	GP2	1.364277e-01
6517	GP5	1
6518	GP6	1
6519	GP9	1
6520	GPA33	1
6521	GPAA1	1
6522	GPAM	1
6523	GPAT2	1
6524	GPATCH1	2.778402e-01
6525	GPATCH2	1.101709e-01
6526	GPATCH3	1
In gene GPATCH4 the following bins exceed PROBCAP:
    PRAD-CH-5788	categ 6	N = 1176    n = 1	mu =   2.66e-07
6527	GPATCH4	1.822536e-03
6528	GPATCH8	1
Done

Running MutSig 2:
Scatter job 72: processing genes 6439 - 6528
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
GOLGA6B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.052170e-01	ci left: 3.157898e-02	ci right 3.889501e-02	k: 351	n:10000
Cons ci ratio: 1.542238e-02	ci left: 8.591667e-01	ci right 8.726194e-01	k: 8660	n:10000
KS ci ratio: 8.984102e-01	ci left: 1.067132e-03	ci right 2.843290e-03	k: 18	n:10000
GOLGA6B   10000 perm   3 sec   (3225 perm/sec)   p_kst 1.800000e-03   p_cons 8.660000e-01   p_joint 3.510000e-02

Joint ci ratio: 1.989008e-01	ci left: 1.715307e-02	ci right 2.098856e-02	k: 380	n:20000
Cons ci ratio: 1.193788e-02	ci left: 8.384404e-01	ci right 8.485595e-01	k: 16871	n:20000
KS ci ratio: 7.682562e-01	ci left: 8.090923e-04	ci right 1.844697e-03	k: 25	n:20000
GOLGA6B   20000 perm   10 sec   (1955 perm/sec)   p_kst 1.250000e-03   p_cons 8.435500e-01   p_joint 1.900000e-02

Joint ci ratio: 3.818765e-01	ci left: 2.833370e-03	ci right 4.198905e-03	k: 104	n:30000
Cons ci ratio: 9.702103e-03	ci left: 8.406189e-01	ci right 8.488476e-01	k: 25343	n:30000
KS ci ratio: 6.529304e-01	ci left: 8.127564e-04	ci right 1.622181e-03	k: 35	n:30000
GOLGA6B   30000 perm   14 sec   (2128 perm/sec)   p_kst 1.166667e-03   p_cons 8.447667e-01   p_joint 3.466667e-03

Joint ci ratio: 1.242610e-01	ci left: 2.276466e-02	ci right 2.580494e-02	k: 970	n:40000
Cons ci ratio: 8.451516e-03	ci left: 8.396245e-01	ci right 8.467756e-01	k: 33729	n:40000
KS ci ratio: 5.654566e-01	ci left: 8.634696e-04	ci right 1.562198e-03	k: 47	n:40000
GOLGA6B   40000 perm   18 sec   (2272 perm/sec)   p_kst 1.175000e-03   p_cons 8.432250e-01   p_joint 2.425000e-02

Joint ci ratio: 1.086348e-01	ci left: 2.399958e-02	ci right 2.677590e-02	k: 1268	n:50000
Cons ci ratio: 7.591931e-03	ci left: 8.388538e-01	ci right 8.452665e-01	k: 42104	n:50000
KS ci ratio: 5.015933e-01	ci left: 9.158475e-04	ci right 1.544372e-03	k: 60	n:50000
GOLGA6B   50000 perm   20 sec   (2519 perm/sec)   p_kst 1.200000e-03   p_cons 8.420800e-01   p_joint 2.536000e-02

Joint ci ratio: 1.027128e-01	ci left: 2.248136e-02	ci right 2.493167e-02	k: 1421	n:60000
Cons ci ratio: 6.957247e-03	ci left: 8.380996e-01	ci right 8.439674e-01	k: 50463	n:60000
KS ci ratio: 4.554059e-01	ci left: 9.537900e-04	ci right 1.529536e-03	k: 73	n:60000
GOLGA6B   60000 perm   22 sec   (2670 perm/sec)   p_kst 1.216667e-03   p_cons 8.410500e-01   p_joint 2.368333e-02

Joint ci ratio: 2.133382e-01	ci left: 4.287942e-03	ci right 5.325191e-03	k: 335	n:70000
Cons ci ratio: 6.443724e-03	ci left: 8.382123e-01	ci right 8.436451e-01	k: 58866	n:70000
KS ci ratio: 4.353004e-01	ci left: 9.063154e-04	ci right 1.422186e-03	k: 80	n:70000
GOLGA6B   70000 perm   25 sec   (2802 perm/sec)   p_kst 1.142857e-03   p_cons 8.409429e-01   p_joint 4.785714e-03

Joint ci ratio: 1.930971e-01	ci left: 4.630063e-03	ci right 5.631342e-03	k: 409	n:80000
Cons ci ratio: 5.500776e-03	ci left: 8.615170e-01	ci right 8.662815e-01	k: 69113	n:80000
KS ci ratio: 4.084506e-01	ci left: 9.159399e-04	ci right 1.396417e-03	k: 91	n:80000
GOLGA6B   80000 perm   28 sec   (2893 perm/sec)   p_kst 1.137500e-03   p_cons 8.639125e-01   p_joint 5.112500e-03

Joint ci ratio: 1.849476e-01	ci left: 4.507247e-03	ci right 5.436212e-03	k: 446	n:90000
Cons ci ratio: 5.670736e-03	ci left: 8.391086e-01	ci right 8.438916e-01	k: 75736	n:90000
KS ci ratio: 3.841633e-01	ci left: 9.342257e-04	ci right 1.387803e-03	k: 103	n:90000
GOLGA6B   90000 perm   30 sec   (2965 perm/sec)   p_kst 1.144444e-03   p_cons 8.415111e-01   p_joint 4.955556e-03

Joint ci ratio: 1.875394e-01	ci left: 3.942007e-03	ci right 4.767149e-03	k: 434	n:100000
Cons ci ratio: 5.370872e-03	ci left: 8.396742e-01	ci right 8.442060e-01	k: 84195	n:100000
KS ci ratio: 3.576288e-01	ci left: 9.859121e-04	ci right 1.423846e-03	k: 119	n:100000
GOLGA6B   100000 perm   34 sec   (2983 perm/sec)   p_kst 1.190000e-03   p_cons 8.419500e-01   p_joint 4.340000e-03

Joint ci ratio: 1.802361e-01	ci left: 3.895845e-03	ci right 4.676102e-03	k: 470	n:110000
Cons ci ratio: 5.117859e-03	ci left: 8.399407e-01	ci right 8.442594e-01	k: 92632	n:110000
KS ci ratio: 3.462791e-01	ci left: 9.625806e-04	ci right 1.373539e-03	k: 127	n:110000
GOLGA6B   110000 perm   36 sec   (3023 perm/sec)   p_kst 1.154545e-03   p_cons 8.421091e-01   p_joint 4.272727e-03

Joint ci ratio: 1.738967e-01	ci left: 3.849925e-03	ci right 4.591016e-03	k: 505	n:120000
Cons ci ratio: 4.910424e-03	ci left: 8.394631e-01	ci right 8.436037e-01	k: 100985	n:120000
KS ci ratio: 3.397173e-01	ci left: 9.204398e-04	ci right 1.304326e-03	k: 132	n:120000
GOLGA6B   120000 perm   39 sec   (3063 perm/sec)   p_kst 1.100000e-03   p_cons 8.415417e-01   p_joint 4.208333e-03

Joint ci ratio: 1.677160e-01	ci left: 3.833588e-03	ci right 4.542655e-03	k: 543	n:130000
Cons ci ratio: 4.726678e-03	ci left: 8.390394e-01	ci right 8.430223e-01	k: 109335	n:130000
KS ci ratio: 3.242380e-01	ci left: 9.413080e-04	ci right 1.312292e-03	k: 145	n:130000
GOLGA6B   130000 perm   42 sec   (3092 perm/sec)   p_kst 1.115385e-03   p_cons 8.410385e-01   p_joint 4.176923e-03

Joint ci ratio: 1.621506e-01	ci left: 3.819985e-03	ci right 4.500804e-03	k: 581	n:140000
Cons ci ratio: 4.546509e-03	ci left: 8.395978e-01	ci right 8.434309e-01	k: 117813	n:140000
KS ci ratio: 3.116813e-01	ci left: 9.529494e-04	ci right 1.311086e-03	k: 157	n:140000
GOLGA6B   140000 perm   45 sec   (3110 perm/sec)   p_kst 1.121429e-03   p_cons 8.415214e-01   p_joint 4.150000e-03

Joint ci ratio: 1.567245e-01	ci left: 3.827750e-03	ci right 4.484977e-03	k: 622	n:150000
Cons ci ratio: 4.392256e-03	ci left: 8.396687e-01	ci right 8.433714e-01	k: 126229	n:150000
KS ci ratio: 3.004789e-01	ci left: 9.632784e-04	ci right 1.309802e-03	k: 169	n:150000
GOLGA6B   150000 perm   48 sec   (3116 perm/sec)   p_kst 1.126667e-03   p_cons 8.415267e-01   p_joint 4.146667e-03

Joint ci ratio: 1.508989e-01	ci left: 3.882989e-03	ci right 4.522682e-03	k: 671	n:160000
Cons ci ratio: 3.896728e-03	ci left: 8.617892e-01	ci right 8.651601e-01	k: 138157	n:160000
KS ci ratio: 2.864903e-01	ci left: 1.001509e-03	ci right 1.341982e-03	k: 186	n:160000
GOLGA6B   160000 perm   51 sec   (3123 perm/sec)   p_kst 1.162500e-03   p_cons 8.634812e-01   p_joint 4.193750e-03

Joint ci ratio: 1.396764e-01	ci left: 4.289546e-03	ci right 4.939291e-03	k: 783	n:170000
Cons ci ratio: 3.776682e-03	ci left: 8.620717e-01	ci right 8.653394e-01	k: 146831	n:170000
KS ci ratio: 2.756455e-01	ci left: 1.024617e-03	ci right 1.357475e-03	k: 201	n:170000
GOLGA6B   170000 perm   55 sec   (3118 perm/sec)   p_kst 1.182353e-03   p_cons 8.637118e-01   p_joint 4.605882e-03

Joint ci ratio: 1.437077e-01	ci left: 3.820749e-03	ci right 4.417618e-03	k: 740	n:180000
Cons ci ratio: 3.667512e-03	ci left: 8.622961e-01	ci right 8.654699e-01	k: 155500	n:180000
KS ci ratio: 2.703471e-01	ci left: 1.009095e-03	ci right 1.329541e-03	k: 209	n:180000
GOLGA6B   180000 perm   58 sec   (3117 perm/sec)   p_kst 1.161111e-03   p_cons 8.638889e-01   p_joint 4.111111e-03

Joint ci ratio: 1.321385e-01	ci left: 4.305774e-03	ci right 4.920017e-03	k: 875	n:190000
Cons ci ratio: 3.568485e-03	ci left: 8.624187e-01	ci right 8.655070e-01	k: 164154	n:190000
KS ci ratio: 2.605987e-01	ci left: 1.034595e-03	ci right 1.349363e-03	k: 225	n:190000
GOLGA6B   190000 perm   61 sec   (3111 perm/sec)   p_kst 1.184211e-03   p_cons 8.639684e-01   p_joint 4.605263e-03

Joint ci ratio: 1.350489e-01	ci left: 3.911614e-03	ci right 4.482904e-03	k: 838	n:200000
Cons ci ratio: 3.474848e-03	ci left: 8.626808e-01	ci right 8.656886e-01	k: 172838	n:200000
KS ci ratio: 2.523566e-01	ci left: 1.053046e-03	ci right 1.361703e-03	k: 240	n:200000
GOLGA6B   200000 perm   65 sec   (3097 perm/sec)   p_kst 1.200000e-03   p_cons 8.641900e-01   p_joint 4.190000e-03

Joint ci ratio: 1.311937e-01	ci left: 3.955519e-03	ci right 4.515444e-03	k: 888	n:210000
Cons ci ratio: 3.390890e-03	ci left: 8.627322e-01	ci right 8.656673e-01	k: 181483	n:210000
KS ci ratio: 2.458133e-01	ci left: 1.060943e-03	ci right 1.362620e-03	k: 253	n:210000
GOLGA6B   210000 perm   68 sec   (3085 perm/sec)   p_kst 1.204762e-03   p_cons 8.642048e-01   p_joint 4.228571e-03

Joint ci ratio: 6.512829e-02	ci left: 1.567211e-02	ci right 1.673161e-02	k: 3563	n:220000
Cons ci ratio: 3.312417e-03	ci left: 8.628025e-01	ci right 8.656697e-01	k: 190133	n:220000
KS ci ratio: 2.366678e-01	ci left: 1.098137e-03	ci right 1.397071e-03	k: 273	n:220000
GOLGA6B   220000 perm   72 sec   (3073 perm/sec)   p_kst 1.240909e-03   p_cons 8.642409e-01   p_joint 1.619545e-02

Joint ci ratio: 6.410011e-02	ci left: 1.548686e-02	ci right 1.651669e-02	k: 3679	n:230000
Cons ci ratio: 3.240231e-03	ci left: 8.627888e-01	ci right 8.655933e-01	k: 198765	n:230000
KS ci ratio: 2.300447e-01	ci left: 1.115892e-03	ci right 1.409952e-03	k: 289	n:230000
GOLGA6B   230000 perm   75 sec   (3060 perm/sec)   p_kst 1.256522e-03   p_cons 8.641957e-01   p_joint 1.599565e-02

Joint ci ratio: 6.271730e-02	ci left: 1.551408e-02	ci right 1.652266e-02	k: 3843	n:240000
Cons ci ratio: 3.176170e-03	ci left: 8.625091e-01	ci right 8.652571e-01	k: 207333	n:240000
KS ci ratio: 2.250554e-01	ci left: 1.120476e-03	ci right 1.408452e-03	k: 302	n:240000
GOLGA6B   240000 perm   79 sec   (3038 perm/sec)   p_kst 1.258333e-03   p_cons 8.638875e-01   p_joint 1.601250e-02

Joint ci ratio: 6.040956e-02	ci left: 1.606337e-02	ci right 1.706789e-02	k: 4140	n:250000
Cons ci ratio: 3.111620e-03	ci left: 8.625657e-01	ci right 8.652578e-01	k: 215979	n:250000
KS ci ratio: 2.200291e-01	ci left: 1.128536e-03	ci right 1.411230e-03	k: 316	n:250000
GOLGA6B   250000 perm   83 sec   (3022 perm/sec)   p_kst 1.264000e-03   p_cons 8.639160e-01   p_joint 1.656000e-02

Joint ci ratio: 6.150971e-02	ci left: 1.490744e-02	ci right 1.585725e-02	k: 3998	n:260000
Cons ci ratio: 3.053996e-03	ci left: 8.623752e-01	ci right 8.650167e-01	k: 224562	n:260000
KS ci ratio: 2.143546e-01	ci left: 1.146961e-03	ci right 1.425886e-03	k: 333	n:260000
GOLGA6B   260000 perm   87 sec   (3004 perm/sec)   p_kst 1.280769e-03   p_cons 8.637000e-01   p_joint 1.537692e-02

Joint ci ratio: 6.377440e-02	ci left: 1.335969e-02	ci right 1.424338e-02	k: 3725	n:270000
Cons ci ratio: 2.997614e-03	ci left: 8.623443e-01	ci right 8.649368e-01	k: 233184	n:270000
KS ci ratio: 2.118346e-01	ci left: 1.132528e-03	ci right 1.404285e-03	k: 341	n:270000
GOLGA6B   270000 perm   90 sec   (2985 perm/sec)   p_kst 1.262963e-03   p_cons 8.636444e-01   p_joint 1.379630e-02

Joint ci ratio: 6.309041e-02	ci left: 1.317073e-02	ci right 1.403224e-02	k: 3807	n:280000
Cons ci ratio: 2.944108e-03	ci left: 8.623268e-01	ci right 8.648728e-01	k: 241809	n:280000
KS ci ratio: 2.076271e-01	ci left: 1.139455e-03	ci right 1.406754e-03	k: 355	n:280000
GOLGA6B   280000 perm   95 sec   (2945 perm/sec)   p_kst 1.267857e-03   p_cons 8.636036e-01   p_joint 1.359643e-02

Joint ci ratio: 6.206494e-02	ci left: 1.314764e-02	ci right 1.399316e-02	k: 3934	n:290000
Cons ci ratio: 2.889897e-03	ci left: 8.625947e-01	ci right 8.650945e-01	k: 250516	n:290000
KS ci ratio: 2.039368e-01	ci left: 1.142682e-03	ci right 1.405379e-03	k: 368	n:290000
GOLGA6B   290000 perm   99 sec   (2926 perm/sec)   p_kst 1.268966e-03   p_cons 8.638483e-01   p_joint 1.356552e-02

Joint ci ratio: 1.226516e-01	ci left: 3.185150e-03	ci right 3.604534e-03	k: 1017	n:300000
Cons ci ratio: 2.841423e-03	ci left: 8.626076e-01	ci right 8.650654e-01	k: 259152	n:300000
KS ci ratio: 2.025716e-01	ci left: 1.120409e-03	ci right 1.376049e-03	k: 373	n:300000
GOLGA6B   300000 perm   103 sec   (2901 perm/sec)   p_kst 1.243333e-03   p_cons 8.638400e-01   p_joint 3.390000e-03

Joint ci ratio: 6.006842e-02	ci left: 1.314437e-02	ci right 1.396154e-02	k: 4200	n:310000
Cons ci ratio: 2.794581e-03	ci left: 8.626815e-01	ci right 8.650988e-01	k: 267807	n:310000
KS ci ratio: 1.981175e-01	ci left: 1.136356e-03	ci right 1.389244e-03	k: 390	n:310000
GOLGA6B   310000 perm   108 sec   (2873 perm/sec)   p_kst 1.258065e-03   p_cons 8.638935e-01   p_joint 1.354839e-02

Joint ci ratio: 5.896763e-02	ci left: 1.322002e-02	ci right 1.402632e-02	k: 4358	n:320000
Cons ci ratio: 2.749945e-03	ci left: 8.627541e-01	ci right 8.651330e-01	k: 276463	n:320000
KS ci ratio: 1.951458e-01	ci left: 1.136499e-03	ci right 1.385174e-03	k: 402	n:320000
GOLGA6B   320000 perm   112 sec   (2853 perm/sec)   p_kst 1.256250e-03   p_cons 8.639469e-01   p_joint 1.361875e-02

Joint ci ratio: 5.806875e-02	ci left: 1.322551e-02	ci right 1.401943e-02	k: 4494	n:330000
Cons ci ratio: 2.706822e-03	ci left: 8.628714e-01	ci right 8.652132e-01	k: 285135	n:330000
KS ci ratio: 1.916117e-01	ci left: 1.145314e-03	ci right 1.390851e-03	k: 417	n:330000
GOLGA6B   330000 perm   117 sec   (2832 perm/sec)   p_kst 1.263636e-03   p_cons 8.640455e-01   p_joint 1.361818e-02

Joint ci ratio: 1.148488e-01	ci left: 3.218537e-03	ci right 3.613531e-03	k: 1160	n:340000
Cons ci ratio: 2.667468e-03	ci left: 8.628225e-01	ci right 8.651301e-01	k: 293753	n:340000
KS ci ratio: 1.898053e-01	ci left: 1.134034e-03	ci right 1.374596e-03	k: 425	n:340000
GOLGA6B   340000 perm   121 sec   (2811 perm/sec)   p_kst 1.250000e-03   p_cons 8.639794e-01   p_joint 3.411765e-03

Joint ci ratio: 1.130136e-01	ci left: 3.232057e-03	ci right 3.621950e-03	k: 1198	n:350000
Cons ci ratio: 2.628663e-03	ci left: 8.628771e-01	ci right 8.651511e-01	k: 302406	n:350000
KS ci ratio: 1.871873e-01	ci left: 1.134301e-03	ci right 1.371224e-03	k: 437	n:350000
GOLGA6B   350000 perm   125 sec   (2790 perm/sec)   p_kst 1.248571e-03   p_cons 8.640171e-01   p_joint 3.422857e-03

Joint ci ratio: 1.117634e-01	ci left: 3.215168e-03	ci right 3.598450e-03	k: 1225	n:360000
Cons ci ratio: 2.592453e-03	ci left: 8.628425e-01	ci right 8.650850e-01	k: 311028	n:360000
KS ci ratio: 1.855021e-01	ci left: 1.123977e-03	ci right 1.356393e-03	k: 445	n:360000
GOLGA6B   360000 perm   130 sec   (2767 perm/sec)   p_kst 1.236111e-03   p_cons 8.639667e-01   p_joint 3.402778e-03

Joint ci ratio: 1.102891e-01	ci left: 3.214984e-03	ci right 3.592859e-03	k: 1258	n:370000
Cons ci ratio: 2.556876e-03	ci left: 8.628859e-01	ci right 8.650976e-01	k: 319678	n:370000
KS ci ratio: 1.828562e-01	ci left: 1.127115e-03	ci right 1.356486e-03	k: 458	n:370000
GOLGA6B   370000 perm   135 sec   (2746 perm/sec)   p_kst 1.237838e-03   p_cons 8.639946e-01   p_joint 3.400000e-03

Joint ci ratio: 1.087450e-01	ci left: 3.222522e-03	ci right 3.595640e-03	k: 1294	n:380000
Cons ci ratio: 2.522611e-03	ci left: 8.629377e-01	ci right 8.651199e-01	k: 328332	n:380000
KS ci ratio: 1.803203e-01	ci left: 1.130110e-03	ci right 1.356553e-03	k: 471	n:380000
GOLGA6B   380000 perm   139 sec   (2725 perm/sec)   p_kst 1.239474e-03   p_cons 8.640316e-01   p_joint 3.405263e-03

Joint ci ratio: 1.075890e-01	ci left: 3.209744e-03	ci right 3.577183e-03	k: 1322	n:390000
Cons ci ratio: 2.489932e-03	ci left: 8.629639e-01	ci right 8.651178e-01	k: 336977	n:390000
KS ci ratio: 1.791865e-01	ci left: 1.115824e-03	ci right 1.337847e-03	k: 477	n:390000
GOLGA6B   390000 perm   144 sec   (2703 perm/sec)   p_kst 1.223077e-03   p_cons 8.640436e-01   p_joint 3.389744e-03

Joint ci ratio: 1.062719e-01	ci left: 3.209794e-03	ci right 3.572459e-03	k: 1355	n:400000
Cons ci ratio: 2.458152e-03	ci left: 8.630216e-01	ci right 8.651481e-01	k: 345635	n:400000
KS ci ratio: 1.767983e-01	ci left: 1.118981e-03	ci right 1.338347e-03	k: 490	n:400000
GOLGA6B   400000 perm   149 sec   (2679 perm/sec)   p_kst 1.225000e-03   p_cons 8.640875e-01   p_joint 3.387500e-03

Joint ci ratio: 1.050779e-01	ci left: 3.205117e-03	ci right 3.562933e-03	k: 1386	n:410000
Cons ci ratio: 2.427053e-03	ci left: 8.631256e-01	ci right 8.652254e-01	k: 354313	n:410000
KS ci ratio: 1.752006e-01	ci left: 1.112672e-03	ci right 1.328622e-03	k: 499	n:410000
GOLGA6B   410000 perm   154 sec   (2655 perm/sec)   p_kst 1.217073e-03   p_cons 8.641780e-01   p_joint 3.380488e-03

Joint ci ratio: 1.038499e-01	ci left: 3.205324e-03	ci right 3.558725e-03	k: 1419	n:420000
Cons ci ratio: 2.625079e-03	ci left: 8.403967e-01	ci right 8.426081e-01	k: 353432	n:420000
KS ci ratio: 1.739880e-01	ci left: 1.102118e-03	ci right 1.314383e-03	k: 506	n:420000
GOLGA6B   420000 perm   160 sec   (2632 perm/sec)   p_kst 1.204762e-03   p_cons 8.415048e-01   p_joint 3.378571e-03

Joint ci ratio: 1.024871e-01	ci left: 3.216874e-03	ci right 3.566615e-03	k: 1457	n:430000
Cons ci ratio: 2.593200e-03	ci left: 8.405309e-01	ci right 8.427157e-01	k: 361899	n:430000
KS ci ratio: 1.711414e-01	ci left: 1.114315e-03	ci right 1.325056e-03	k: 523	n:430000
GOLGA6B   430000 perm   165 sec   (2608 perm/sec)   p_kst 1.216279e-03   p_cons 8.416256e-01   p_joint 3.388372e-03

Joint ci ratio: 1.014150e-01	ci left: 3.212421e-03	ci right 3.557806e-03	k: 1488	n:440000
Cons ci ratio: 2.563065e-03	ci left: 8.405953e-01	ci right 8.427548e-01	k: 370338	n:440000
KS ci ratio: 1.693731e-01	ci left: 1.112925e-03	ci right 1.321006e-03	k: 534	n:440000
GOLGA6B   440000 perm   171 sec   (2580 perm/sec)   p_kst 1.213636e-03   p_cons 8.416773e-01   p_joint 3.381818e-03

Joint ci ratio: 1.002766e-01	ci left: 3.214684e-03	ci right 3.556204e-03	k: 1522	n:450000
Cons ci ratio: 2.536027e-03	ci left: 8.404386e-01	ci right 8.425748e-01	k: 378679	n:450000
KS ci ratio: 1.678125e-01	ci left: 1.109477e-03	ci right 1.314809e-03	k: 544	n:450000
GOLGA6B   450000 perm   176 sec   (2560 perm/sec)   p_kst 1.208889e-03   p_cons 8.415089e-01   p_joint 3.382222e-03

Joint ci ratio: 9.923962e-02	ci left: 3.212629e-03	ci right 3.550196e-03	k: 1554	n:460000
Cons ci ratio: 2.510152e-03	ci left: 8.402539e-01	ci right 8.423679e-01	k: 387004	n:460000
KS ci ratio: 1.665949e-01	ci left: 1.102022e-03	ci right 1.304345e-03	k: 552	n:460000
GOLGA6B   460000 perm   181 sec   (2539 perm/sec)   p_kst 1.200000e-03   p_cons 8.413130e-01   p_joint 3.378261e-03

Joint ci ratio: 9.817214e-02	ci left: 3.214830e-03	ci right 3.548786e-03	k: 1588	n:470000
Cons ci ratio: 2.482891e-03	ci left: 8.403098e-01	ci right 8.424009e-01	k: 395438	n:470000
KS ci ratio: 1.643800e-01	ci left: 1.109168e-03	ci right 1.309828e-03	k: 567	n:470000
GOLGA6B   470000 perm   187 sec   (2519 perm/sec)   p_kst 1.206383e-03   p_cons 8.413574e-01   p_joint 3.378723e-03

Joint ci ratio: 9.731905e-02	ci left: 3.204760e-03	ci right 3.534612e-03	k: 1616	n:480000
Cons ci ratio: 2.456040e-03	ci left: 8.404136e-01	ci right 8.424823e-01	k: 403896	n:480000
KS ci ratio: 1.630935e-01	ci left: 1.104042e-03	ci right 1.302058e-03	k: 576	n:480000
GOLGA6B   480000 perm   192 sec   (2499 perm/sec)   p_kst 1.200000e-03   p_cons 8.414500e-01   p_joint 3.366667e-03

Joint ci ratio: 9.634101e-02	ci left: 3.205073e-03	ci right 3.531455e-03	k: 1649	n:490000
Cons ci ratio: 2.431434e-03	ci left: 8.403598e-01	ci right 8.424076e-01	k: 412279	n:490000
KS ci ratio: 1.615609e-01	ci left: 1.103047e-03	ci right 1.298846e-03	k: 587	n:490000
GOLGA6B   490000 perm   198 sec   (2479 perm/sec)   p_kst 1.197959e-03   p_cons 8.413857e-01   p_joint 3.365306e-03

Joint ci ratio: 9.550583e-02	ci left: 3.197580e-03	ci right 3.520217e-03	k: 1678	n:500000
Cons ci ratio: 2.407301e-03	ci left: 8.403363e-01	ci right 8.423637e-01	k: 420676	n:500000
KS ci ratio: 1.600707e-01	ci left: 1.102101e-03	ci right 1.295754e-03	k: 598	n:500000
GOLGA6B   500000 perm   203 sec   (2460 perm/sec)   p_kst 1.196000e-03   p_cons 8.413520e-01   p_joint 3.356000e-03

Joint ci ratio: 9.460866e-02	ci left: 3.196135e-03	ci right 3.515430e-03	k: 1710	n:510000
Cons ci ratio: 2.384625e-03	ci left: 8.402294e-01	ci right 8.422373e-01	k: 429030	n:510000
KS ci ratio: 1.588820e-01	ci left: 1.097434e-03	ci right 1.288698e-03	k: 607	n:510000
GOLGA6B   510000 perm   209 sec   (2440 perm/sec)   p_kst 1.190196e-03   p_cons 8.412353e-01   p_joint 3.352941e-03

Joint ci ratio: 9.392574e-02	ci left: 3.181614e-03	ci right 3.497037e-03	k: 1735	n:520000
Cons ci ratio: 2.361846e-03	ci left: 8.402095e-01	ci right 8.421982e-01	k: 437427	n:520000
KS ci ratio: 1.579760e-01	ci left: 1.089256e-03	ci right 1.277910e-03	k: 614	n:520000
GOLGA6B   520000 perm   215 sec   (2420 perm/sec)   p_kst 1.180769e-03   p_cons 8.412058e-01   p_joint 3.336538e-03

Joint ci ratio: 9.304558e-02	ci left: 3.182392e-03	ci right 3.494775e-03	k: 1768	n:530000
Cons ci ratio: 2.339046e-03	ci left: 8.402662e-01	ci right 8.422358e-01	k: 445864	n:530000
KS ci ratio: 1.568330e-01	ci left: 1.085017e-03	ci right 1.271448e-03	k: 623	n:530000
GOLGA6B   530000 perm   221 sec   (2401 perm/sec)   p_kst 1.175472e-03   p_cons 8.412528e-01   p_joint 3.335849e-03

Joint ci ratio: 9.221538e-02	ci left: 3.181345e-03	ci right 3.490688e-03	k: 1800	n:540000
Cons ci ratio: 2.317520e-03	ci left: 8.402484e-01	ci right 8.421998e-01	k: 454262	n:540000
KS ci ratio: 1.555915e-01	ci left: 1.082718e-03	ci right 1.267145e-03	k: 633	n:540000
GOLGA6B   540000 perm   227 sec   (2375 perm/sec)   p_kst 1.172222e-03   p_cons 8.412259e-01   p_joint 3.333333e-03

Joint ci ratio: 9.143205e-02	ci left: 3.178571e-03	ci right 3.484879e-03	k: 1831	n:550000
Cons ci ratio: 2.297000e-03	ci left: 8.401822e-01	ci right 8.421161e-01	k: 462633	n:550000
KS ci ratio: 1.541396e-01	ci left: 1.084005e-03	ci right 1.266769e-03	k: 645	n:550000
GOLGA6B   550000 perm   234 sec   (2355 perm/sec)   p_kst 1.172727e-03   p_cons 8.411509e-01   p_joint 3.329091e-03

Joint ci ratio: 9.076615e-02	ci left: 3.168926e-03	ci right 3.471962e-03	k: 1858	n:560000
Cons ci ratio: 2.277015e-03	ci left: 8.401184e-01	ci right 8.420353e-01	k: 471004	n:560000
KS ci ratio: 1.533119e-01	ci left: 1.076667e-03	ci right 1.257129e-03	k: 652	n:560000
GOLGA6B   560000 perm   240 sec   (2337 perm/sec)   p_kst 1.164286e-03   p_cons 8.410786e-01   p_joint 3.317857e-03

Joint ci ratio: 9.011460e-02	ci left: 3.159627e-03	ci right 3.459491e-03	k: 1885	n:570000
Cons ci ratio: 2.257749e-03	ci left: 8.400323e-01	ci right 8.419327e-01	k: 479361	n:570000
KS ci ratio: 1.524973e-01	ci left: 1.069588e-03	ci right 1.247825e-03	k: 659	n:570000
GOLGA6B   570000 perm   246 sec   (2318 perm/sec)   p_kst 1.156140e-03   p_cons 8.409842e-01   p_joint 3.307018e-03

Joint ci ratio: 8.938317e-02	ci left: 3.157399e-03	ci right 3.454493e-03	k: 1916	n:580000
Cons ci ratio: 2.238372e-03	ci left: 8.400201e-01	ci right 8.419041e-01	k: 487759	n:580000
KS ci ratio: 1.512422e-01	ci left: 1.069392e-03	ci right 1.245996e-03	k: 670	n:580000
GOLGA6B   580000 perm   252 sec   (2298 perm/sec)   p_kst 1.155172e-03   p_cons 8.409638e-01   p_joint 3.303448e-03

Joint ci ratio: 8.871496e-02	ci left: 3.151942e-03	ci right 3.446189e-03	k: 1945	n:590000
Cons ci ratio: 2.219147e-03	ci left: 8.400491e-01	ci right 8.419170e-01	k: 496181	n:590000
KS ci ratio: 1.504600e-01	ci left: 1.062683e-03	ci right 1.237190e-03	k: 677	n:590000
GOLGA6B   590000 perm   259 sec   (2280 perm/sec)   p_kst 1.147458e-03   p_cons 8.409847e-01   p_joint 3.296610e-03

Joint ci ratio: 8.788312e-02	ci left: 3.159715e-03	ci right 3.451780e-03	k: 1982	n:600000
Cons ci ratio: 2.200438e-03	ci left: 8.400739e-01	ci right 8.419261e-01	k: 504601	n:600000
KS ci ratio: 1.487150e-01	ci left: 1.070641e-03	ci right 1.244234e-03	k: 693	n:600000
GOLGA6B   600000 perm   265 sec   (2262 perm/sec)   p_kst 1.155000e-03   p_cons 8.410017e-01   p_joint 3.303333e-03

Joint ci ratio: 8.716088e-02	ci left: 3.160831e-03	ci right 3.450476e-03	k: 2015	n:610000
Cons ci ratio: 2.182956e-03	ci left: 8.400043e-01	ci right 8.418416e-01	k: 512964	n:610000
KS ci ratio: 1.476552e-01	ci left: 1.068875e-03	ci right 1.240837e-03	k: 703	n:610000
GOLGA6B   610000 perm   272 sec   (2243 perm/sec)   p_kst 1.152459e-03   p_cons 8.409246e-01   p_joint 3.303279e-03

Joint ci ratio: 8.641385e-02	ci left: 3.165076e-03	ci right 3.452499e-03	k: 2050	n:620000
Cons ci ratio: 2.165426e-03	ci left: 8.399936e-01	ci right 8.418161e-01	k: 521362	n:620000
KS ci ratio: 1.465150e-01	ci left: 1.068724e-03	ci right 1.239218e-03	k: 714	n:620000
GOLGA6B   620000 perm   279 sec   (2225 perm/sec)   p_kst 1.151613e-03   p_cons 8.409065e-01   p_joint 3.306452e-03

Joint ci ratio: 8.558286e-02	ci left: 3.176964e-03	ci right 3.462554e-03	k: 2090	n:630000
Cons ci ratio: 2.148453e-03	ci left: 8.399658e-01	ci right 8.417739e-01	k: 529749	n:630000
KS ci ratio: 1.450015e-01	ci left: 1.074701e-03	ci right 1.244225e-03	k: 729	n:630000
GOLGA6B   630000 perm   285 sec   (2207 perm/sec)   p_kst 1.157143e-03   p_cons 8.408714e-01   p_joint 3.317460e-03

Joint ci ratio: 8.465589e-02	ci left: 3.197671e-03	ci right 3.481854e-03	k: 2136	n:640000
Cons ci ratio: 1.947872e-03	ci left: 8.626956e-01	ci right 8.643792e-01	k: 552665	n:640000
KS ci ratio: 1.434376e-01	ci left: 1.082007e-03	ci right 1.250685e-03	k: 745	n:640000
GOLGA6B   640000 perm   293 sec   (2187 perm/sec)   p_kst 1.164062e-03   p_cons 8.635391e-01   p_joint 3.337500e-03

Joint ci ratio: 8.399034e-02	ci left: 3.199681e-03	ci right 3.481698e-03	k: 2170	n:650000
Cons ci ratio: 1.932191e-03	ci left: 8.627802e-01	ci right 8.644504e-01	k: 561351	n:650000
KS ci ratio: 1.423917e-01	ci left: 1.081679e-03	ci right 1.248972e-03	k: 756	n:650000
GOLGA6B   650000 perm   299 sec   (2171 perm/sec)   p_kst 1.163077e-03   p_cons 8.636169e-01   p_joint 3.338462e-03

Joint ci ratio: 8.317011e-02	ci left: 3.214991e-03	ci right 3.495456e-03	k: 2213	n:660000
Cons ci ratio: 1.917463e-03	ci left: 8.627909e-01	ci right 8.644483e-01	k: 569990	n:660000
KS ci ratio: 1.408187e-01	ci left: 1.090135e-03	ci right 1.256717e-03	k: 773	n:660000
GOLGA6B   660000 perm   307 sec   (2153 perm/sec)   p_kst 1.171212e-03   p_cons 8.636212e-01   p_joint 3.353030e-03

Joint ci ratio: 8.264947e-02	ci left: 3.207931e-03	ci right 3.485943e-03	k: 2241	n:670000
Cons ci ratio: 1.903777e-03	ci left: 8.627130e-01	ci right 8.643585e-01	k: 578570	n:670000
KS ci ratio: 1.400074e-01	ci left: 1.086825e-03	ci right 1.251865e-03	k: 782	n:670000
GOLGA6B   670000 perm   314 sec   (2136 perm/sec)   p_kst 1.167164e-03   p_cons 8.635373e-01   p_joint 3.344776e-03

Joint ci ratio: 8.233890e-02	ci left: 3.185238e-03	ci right 3.460197e-03	k: 2258	n:680000
Cons ci ratio: 1.889519e-03	ci left: 8.627451e-01	ci right 8.643783e-01	k: 587223	n:680000
KS ci ratio: 1.396519e-01	ci left: 1.076519e-03	ci right 1.239543e-03	k: 786	n:680000
GOLGA6B   680000 perm   321 sec   (2121 perm/sec)   p_kst 1.155882e-03   p_cons 8.635632e-01   p_joint 3.320588e-03

Joint ci ratio: 8.163687e-02	ci left: 3.194438e-03	ci right 3.467729e-03	k: 2297	n:690000
Cons ci ratio: 1.876176e-03	ci left: 8.627008e-01	ci right 8.643223e-01	k: 595824	n:690000
KS ci ratio: 1.380811e-01	ci left: 1.086098e-03	ci right 1.248571e-03	k: 804	n:690000
GOLGA6B   690000 perm   328 sec   (2105 perm/sec)   p_kst 1.165217e-03   p_cons 8.635130e-01   p_joint 3.328986e-03

Joint ci ratio: 8.114433e-02	ci left: 3.187989e-03	ci right 3.459004e-03	k: 2325	n:700000
Cons ci ratio: 1.863067e-03	ci left: 8.626634e-01	ci right 8.642735e-01	k: 604429	n:700000
KS ci ratio: 1.374004e-01	ci left: 1.081617e-03	ci right 1.242557e-03	k: 812	n:700000
GOLGA6B   700000 perm   335 sec   (2089 perm/sec)   p_kst 1.160000e-03   p_cons 8.634700e-01   p_joint 3.321429e-03

Joint ci ratio: 8.055765e-02	ci left: 3.190007e-03	ci right 3.459141e-03	k: 2359	n:710000
Cons ci ratio: 1.850228e-03	ci left: 8.626272e-01	ci right 8.642261e-01	k: 613034	n:710000
KS ci ratio: 1.366464e-01	ci left: 1.078624e-03	ci right 1.238167e-03	k: 821	n:710000
GOLGA6B   710000 perm   342 sec   (2074 perm/sec)   p_kst 1.156338e-03   p_cons 8.634282e-01   p_joint 3.322535e-03

Joint ci ratio: 8.003384e-02	ci left: 3.187892e-03	ci right 3.455017e-03	k: 2390	n:720000
Cons ci ratio: 1.838203e-03	ci left: 8.625211e-01	ci right 8.641094e-01	k: 621588	n:720000
KS ci ratio: 1.354972e-01	ci left: 1.082426e-03	ci right 1.241076e-03	k: 835	n:720000
GOLGA6B   720000 perm   351 sec   (2054 perm/sec)   p_kst 1.159722e-03   p_cons 8.633167e-01   p_joint 3.319444e-03

Joint ci ratio: 7.952012e-02	ci left: 3.185841e-03	ci right 3.451001e-03	k: 2421	n:730000
Cons ci ratio: 1.825338e-03	ci left: 8.625565e-01	ci right 8.641338e-01	k: 630243	n:730000
KS ci ratio: 1.350944e-01	ci left: 1.074216e-03	ci right 1.231156e-03	k: 840	n:730000
GOLGA6B   730000 perm   358 sec   (2039 perm/sec)   p_kst 1.150685e-03   p_cons 8.633466e-01   p_joint 3.316438e-03

Joint ci ratio: 7.891939e-02	ci left: 3.191799e-03	ci right 3.455356e-03	k: 2458	n:740000
Cons ci ratio: 1.812874e-03	ci left: 8.625734e-01	ci right 8.641399e-01	k: 638885	n:740000
KS ci ratio: 1.340621e-01	ci left: 1.076675e-03	ci right 1.232677e-03	k: 853	n:740000
GOLGA6B   740000 perm   366 sec   (2025 perm/sec)   p_kst 1.152703e-03   p_cons 8.633581e-01   p_joint 3.321622e-03

Joint ci ratio: 7.833207e-02	ci left: 3.197605e-03	ci right 3.459587e-03	k: 2495	n:750000
Cons ci ratio: 1.800804e-03	ci left: 8.625712e-01	ci right 8.641273e-01	k: 647513	n:750000
KS ci ratio: 1.327469e-01	ci left: 1.084230e-03	ci right 1.239664e-03	k: 870	n:750000
GOLGA6B   750000 perm   373 sec   (2009 perm/sec)   p_kst 1.160000e-03   p_cons 8.633507e-01   p_joint 3.326667e-03

Joint ci ratio: 7.769614e-02	ci left: 3.208427e-03	ci right 3.469065e-03	k: 2536	n:760000
Cons ci ratio: 1.788863e-03	ci left: 8.625837e-01	ci right 8.641294e-01	k: 656152	n:760000
KS ci ratio: 1.317671e-01	ci left: 1.086503e-03	ci right 1.241023e-03	k: 883	n:760000
GOLGA6B   760000 perm   382 sec   (1992 perm/sec)   p_kst 1.161842e-03   p_cons 8.633579e-01   p_joint 3.336842e-03

Joint ci ratio: 7.715056e-02	ci left: 3.212608e-03	ci right 3.471671e-03	k: 2572	n:770000
Cons ci ratio: 1.776490e-03	ci left: 8.626843e-01	ci right 8.642195e-01	k: 664859	n:770000
KS ci ratio: 1.306629e-01	ci left: 1.091234e-03	ci right 1.245026e-03	k: 898	n:770000
GOLGA6B   770000 perm   390 sec   (1975 perm/sec)   p_kst 1.166234e-03   p_cons 8.634532e-01   p_joint 3.340260e-03

Joint ci ratio: 7.666054e-02	ci left: 3.212914e-03	ci right 3.470283e-03	k: 2605	n:780000
Cons ci ratio: 1.764697e-03	ci left: 8.627387e-01	ci right 8.642637e-01	k: 673532	n:780000
KS ci ratio: 1.299423e-01	ci left: 1.089646e-03	ci right 1.242302e-03	k: 908	n:780000
GOLGA6B   780000 perm   398 sec   (1959 perm/sec)   p_kst 1.164103e-03   p_cons 8.635026e-01   p_joint 3.339744e-03

Joint ci ratio: 7.619423e-02	ci left: 3.211977e-03	ci right 3.467636e-03	k: 2637	n:790000
Cons ci ratio: 1.753605e-03	ci left: 8.627283e-01	ci right 8.642437e-01	k: 682155	n:790000
KS ci ratio: 1.294453e-01	ci left: 1.084427e-03	ci right 1.235725e-03	k: 915	n:790000
GOLGA6B   790000 perm   406 sec   (1946 perm/sec)   p_kst 1.158228e-03   p_cons 8.634873e-01   p_joint 3.337975e-03

Joint ci ratio: 7.569367e-02	ci left: 3.214746e-03	ci right 3.468871e-03	k: 2672	n:800000
Cons ci ratio: 1.742462e-03	ci left: 8.627533e-01	ci right 8.642591e-01	k: 690806	n:800000
KS ci ratio: 1.281227e-01	ci left: 1.093856e-03	ci right 1.244793e-03	k: 934	n:800000
GOLGA6B   800000 perm   414 sec   (1932 perm/sec)   p_kst 1.167500e-03   p_cons 8.635075e-01   p_joint 3.340000e-03

Joint ci ratio: 7.530056e-02	ci left: 3.208973e-03	ci right 3.461266e-03	k: 2700	n:810000
Cons ci ratio: 1.731483e-03	ci left: 8.627838e-01	ci right 8.642802e-01	k: 699462	n:810000
KS ci ratio: 1.275107e-01	ci left: 1.091108e-03	ci right 1.240891e-03	k: 943	n:810000
GOLGA6B   810000 perm   422 sec   (1919 perm/sec)   p_kst 1.164198e-03   p_cons 8.635333e-01   p_joint 3.333333e-03

Joint ci ratio: 7.488598e-02	ci left: 3.205737e-03	ci right 3.456328e-03	k: 2730	n:820000
Cons ci ratio: 1.720984e-03	ci left: 8.627758e-01	ci right 8.642631e-01	k: 708087	n:820000
KS ci ratio: 1.267079e-01	ci left: 1.091970e-03	ci right 1.240858e-03	k: 955	n:820000
GOLGA6B   820000 perm   431 sec   (1905 perm/sec)   p_kst 1.164634e-03   p_cons 8.635207e-01   p_joint 3.329268e-03

Joint ci ratio: 7.445113e-02	ci left: 3.204948e-03	ci right 3.453960e-03	k: 2762	n:830000
Cons ci ratio: 1.709722e-03	ci left: 8.628996e-01	ci right 8.643774e-01	k: 716821	n:830000
KS ci ratio: 1.261813e-01	ci left: 1.088148e-03	ci right 1.235851e-03	k: 963	n:830000
GOLGA6B   830000 perm   439 sec   (1890 perm/sec)   p_kst 1.160241e-03   p_cons 8.636398e-01   p_joint 3.327711e-03

Joint ci ratio: 7.387804e-02	ci left: 3.217036e-03	ci right 3.464980e-03	k: 2805	n:840000
Cons ci ratio: 1.699354e-03	ci left: 8.629262e-01	ci right 8.643951e-01	k: 725476	n:840000
KS ci ratio: 1.250190e-01	ci left: 1.095949e-03	ci right 1.243240e-03	k: 981	n:840000
GOLGA6B   840000 perm   447 sec   (1878 perm/sec)   p_kst 1.167857e-03   p_cons 8.636619e-01   p_joint 3.339286e-03

Joint ci ratio: 7.347341e-02	ci left: 3.214987e-03	ci right 3.461358e-03	k: 2836	n:850000
Cons ci ratio: 1.689764e-03	ci left: 8.628697e-01	ci right 8.643302e-01	k: 734061	n:850000
KS ci ratio: 1.241995e-01	ci left: 1.097873e-03	ci right 1.244384e-03	k: 994	n:850000
GOLGA6B   850000 perm   456 sec   (1865 perm/sec)   p_kst 1.169412e-03   p_cons 8.636012e-01   p_joint 3.336471e-03

Joint ci ratio: 7.303703e-02	ci left: 3.216414e-03	ci right 3.461368e-03	k: 2870	n:860000
Cons ci ratio: 1.679812e-03	ci left: 8.628880e-01	ci right 8.643398e-01	k: 742709	n:860000
KS ci ratio: 1.235802e-01	ci left: 1.096375e-03	ci right 1.241902e-03	k: 1004	n:860000
GOLGA6B   860000 perm   464 sec   (1854 perm/sec)   p_kst 1.167442e-03   p_cons 8.636151e-01   p_joint 3.337209e-03

Joint ci ratio: 7.257074e-02	ci left: 3.221199e-03	ci right 3.464885e-03	k: 2907	n:870000
Cons ci ratio: 1.669675e-03	ci left: 8.629565e-01	ci right 8.643997e-01	k: 751401	n:870000
KS ci ratio: 1.228489e-01	ci left: 1.097141e-03	ci right 1.241846e-03	k: 1016	n:870000
GOLGA6B   870000 perm   472 sec   (1842 perm/sec)   p_kst 1.167816e-03   p_cons 8.636793e-01   p_joint 3.341379e-03

Joint ci ratio: 7.200297e-02	ci left: 3.235923e-03	ci right 3.478728e-03	k: 2953	n:880000
Cons ci ratio: 1.660095e-03	ci left: 8.629700e-01	ci right 8.644049e-01	k: 760046	n:880000
KS ci ratio: 1.217756e-01	ci left: 1.104502e-03	ci right 1.248814e-03	k: 1034	n:880000
GOLGA6B   880000 perm   482 sec   (1827 perm/sec)   p_kst 1.175000e-03   p_cons 8.636886e-01   p_joint 3.355682e-03

Joint ci ratio: 7.150813e-02	ci left: 3.244806e-03	ci right 3.486534e-03	k: 2994	n:890000
Cons ci ratio: 1.650655e-03	ci left: 8.629866e-01	ci right 8.644133e-01	k: 768694	n:890000
KS ci ratio: 1.207873e-01	ci left: 1.110614e-03	ci right 1.254462e-03	k: 1051	n:890000
GOLGA6B   890000 perm   491 sec   (1813 perm/sec)   p_kst 1.180899e-03   p_cons 8.637011e-01   p_joint 3.364045e-03

Joint ci ratio: 7.114101e-02	ci left: 3.242582e-03	ci right 3.482854e-03	k: 3025	n:900000
Cons ci ratio: 1.641699e-03	ci left: 8.629560e-01	ci right 8.643750e-01	k: 777300	n:900000
KS ci ratio: 1.202741e-01	ci left: 1.107972e-03	ci right 1.250825e-03	k: 1060	n:900000
GOLGA6B   900000 perm   500 sec   (1801 perm/sec)   p_kst 1.177778e-03   p_cons 8.636667e-01   p_joint 3.361111e-03

Joint ci ratio: 7.073307e-02	ci left: 3.244729e-03	ci right 3.483724e-03	k: 3060	n:910000
Cons ci ratio: 1.632141e-03	ci left: 8.630341e-01	ci right 8.644449e-01	k: 786004	n:910000
KS ci ratio: 1.197674e-01	ci left: 1.105390e-03	ci right 1.247267e-03	k: 1069	n:910000
GOLGA6B   910000 perm   508 sec   (1790 perm/sec)   p_kst 1.174725e-03   p_cons 8.637407e-01   p_joint 3.362637e-03

Joint ci ratio: 7.033207e-02	ci left: 3.246833e-03	ci right 3.484572e-03	k: 3095	n:920000
Cons ci ratio: 1.623122e-03	ci left: 8.630560e-01	ci right 8.644591e-01	k: 794658	n:920000
KS ci ratio: 1.192117e-01	ci left: 1.103919e-03	ci right 1.244904e-03	k: 1079	n:920000
GOLGA6B   920000 perm   517 sec   (1779 perm/sec)   p_kst 1.172826e-03   p_cons 8.637587e-01   p_joint 3.364130e-03

Joint ci ratio: 6.993781e-02	ci left: 3.248895e-03	ci right 3.485398e-03	k: 3130	n:930000
Cons ci ratio: 1.614280e-03	ci left: 8.630732e-01	ci right 8.644686e-01	k: 803308	n:930000
KS ci ratio: 1.185549e-01	ci left: 1.104569e-03	ci right 1.244805e-03	k: 1091	n:930000
GOLGA6B   930000 perm   526 sec   (1767 perm/sec)   p_kst 1.173118e-03   p_cons 8.637720e-01   p_joint 3.365591e-03

Joint ci ratio: 6.961632e-02	ci left: 3.244645e-03	ci right 3.479709e-03	k: 3159	n:940000
Cons ci ratio: 1.605668e-03	ci left: 8.630772e-01	ci right 8.644652e-01	k: 811946	n:940000
KS ci ratio: 1.180695e-01	ci left: 1.102109e-03	ci right 1.241420e-03	k: 1100	n:940000
GOLGA6B   940000 perm   535 sec   (1756 perm/sec)   p_kst 1.170213e-03   p_cons 8.637723e-01   p_joint 3.360638e-03

Joint ci ratio: 6.927744e-02	ci left: 3.242555e-03	ci right 3.476278e-03	k: 3190	n:950000
Cons ci ratio: 1.597079e-03	ci left: 8.630981e-01	ci right 8.644786e-01	k: 820600	n:950000
KS ci ratio: 1.175370e-01	ci left: 1.100724e-03	ci right 1.239189e-03	k: 1110	n:950000
GOLGA6B   950000 perm   544 sec   (1745 perm/sec)   p_kst 1.168421e-03   p_cons 8.637895e-01   p_joint 3.357895e-03

Joint ci ratio: 6.891127e-02	ci left: 3.243584e-03	ci right 3.476095e-03	k: 3224	n:960000
Cons ci ratio: 1.588576e-03	ci left: 8.631258e-01	ci right 8.644991e-01	k: 829261	n:960000
KS ci ratio: 1.170117e-01	ci left: 1.099369e-03	ci right 1.237002e-03	k: 1120	n:960000
GOLGA6B   960000 perm   554 sec   (1733 perm/sec)   p_kst 1.166667e-03   p_cons 8.638135e-01   p_joint 3.358333e-03

Joint ci ratio: 6.860368e-02	ci left: 3.239527e-03	ci right 3.470671e-03	k: 3253	n:970000
Cons ci ratio: 1.580451e-03	ci left: 8.631168e-01	ci right 8.644830e-01	k: 837887	n:970000
KS ci ratio: 1.162364e-01	ci left: 1.103048e-03	ci right 1.240165e-03	k: 1135	n:970000
GOLGA6B   970000 perm   563 sec   (1722 perm/sec)   p_kst 1.170103e-03   p_cons 8.638010e-01   p_joint 3.353608e-03

Joint ci ratio: 6.826887e-02	ci left: 3.238565e-03	ci right 3.468467e-03	k: 3285	n:980000
Cons ci ratio: 1.572292e-03	ci left: 8.631316e-01	ci right 8.644907e-01	k: 846536	n:980000
KS ci ratio: 1.156778e-01	ci left: 1.102692e-03	ci right 1.239060e-03	k: 1146	n:980000
GOLGA6B   980000 perm   573 sec   (1711 perm/sec)   p_kst 1.169388e-03   p_cons 8.638122e-01   p_joint 3.352041e-03

Joint ci ratio: 6.787737e-02	ci left: 3.243583e-03	ci right 3.472469e-03	k: 3323	n:990000
Cons ci ratio: 1.564130e-03	ci left: 8.631653e-01	ci right 8.645174e-01	k: 855204	n:990000
KS ci ratio: 1.151769e-01	ci left: 1.101363e-03	ci right 1.236937e-03	k: 1156	n:990000
GOLGA6B   990000 perm   582 sec   (1701 perm/sec)   p_kst 1.167677e-03   p_cons 8.638424e-01   p_joint 3.356566e-03

Joint ci ratio: 6.753285e-02	ci left: 3.244572e-03	ci right 3.472320e-03	k: 3357	n:1000000
Cons ci ratio: 1.555862e-03	ci left: 8.632334e-01	ci right 8.645785e-01	k: 863907	n:1000000
KS ci ratio: 1.145351e-01	ci left: 1.102976e-03	ci right 1.237940e-03	k: 1169	n:1000000
GOLGA6B   1000000 perm   591 sec   (1691 perm/sec)   p_kst 1.169000e-03   p_cons 8.639070e-01   p_joint 3.357000e-03

Joint ci ratio: 6.719353e-02	ci left: 3.245544e-03	ci right 3.472171e-03	k: 3391	n:1010000
Cons ci ratio: 1.548356e-03	ci left: 8.632039e-01	ci right 8.645425e-01	k: 872513	n:1010000
KS ci ratio: 1.138077e-01	ci left: 1.106483e-03	ci right 1.240959e-03	k: 1184	n:1010000
GOLGA6B   1010000 perm   601 sec   (1680 perm/sec)   p_kst 1.172277e-03   p_cons 8.638743e-01   p_joint 3.357426e-03

Joint ci ratio: 6.688865e-02	ci left: 3.243607e-03	ci right 3.469032e-03	k: 3422	n:1020000
Cons ci ratio: 1.541041e-03	ci left: 8.631623e-01	ci right 8.644945e-01	k: 881106	n:1020000
KS ci ratio: 1.131885e-01	ci left: 1.108018e-03	ci right 1.241899e-03	k: 1197	n:1020000
GOLGA6B   1020000 perm   611 sec   (1669 perm/sec)   p_kst 1.173529e-03   p_cons 8.638294e-01   p_joint 3.354902e-03

Joint ci ratio: 6.650102e-02	ci left: 3.250303e-03	ci right 3.474834e-03	k: 3462	n:1030000
Cons ci ratio: 1.533683e-03	ci left: 8.631439e-01	ci right 8.644696e-01	k: 889722	n:1030000
KS ci ratio: 1.128127e-01	ci left: 1.104808e-03	ci right 1.237829e-03	k: 1205	n:1030000
GOLGA6B   1030000 perm   621 sec   (1659 perm/sec)   p_kst 1.169903e-03   p_cons 8.638078e-01   p_joint 3.361165e-03

Joint ci ratio: 6.610111e-02	ci left: 3.258766e-03	ci right 3.482475e-03	k: 3504	n:1040000
Cons ci ratio: 1.526212e-03	ci left: 8.631595e-01	ci right 8.644788e-01	k: 898373	n:1040000
KS ci ratio: 1.122555e-01	ci left: 1.105398e-03	ci right 1.237790e-03	k: 1217	n:1040000
GOLGA6B   1040000 perm   631 sec   (1649 perm/sec)   p_kst 1.170192e-03   p_cons 8.638202e-01   p_joint 3.369231e-03

Joint ci ratio: 6.574554e-02	ci left: 3.263324e-03	ci right 3.486096e-03	k: 3542	n:1050000
Cons ci ratio: 1.518811e-03	ci left: 8.631806e-01	ci right 8.644936e-01	k: 907030	n:1050000
KS ci ratio: 1.116158e-01	ci left: 1.107831e-03	ci right 1.239707e-03	k: 1231	n:1050000
GOLGA6B   1050000 perm   641 sec   (1639 perm/sec)   p_kst 1.172381e-03   p_cons 8.638381e-01   p_joint 3.373333e-03

Joint ci ratio: 6.552429e-02	ci left: 3.254808e-03	ci right 3.476222e-03	k: 3566	n:1060000
Cons ci ratio: 1.511632e-03	ci left: 8.631834e-01	ci right 8.644901e-01	k: 915668	n:1060000
KS ci ratio: 1.113453e-01	ci left: 1.102882e-03	ci right 1.233830e-03	k: 1237	n:1060000
GOLGA6B   1060000 perm   651 sec   (1629 perm/sec)   p_kst 1.166981e-03   p_cons 8.638377e-01   p_joint 3.364151e-03

Joint ci ratio: 6.527791e-02	ci left: 3.249210e-03	ci right 3.469380e-03	k: 3593	n:1070000
Cons ci ratio: 1.504476e-03	ci left: 8.631983e-01	ci right 8.644988e-01	k: 924319	n:1070000
KS ci ratio: 1.108095e-01	ci left: 1.103478e-03	ci right 1.233826e-03	k: 1249	n:1070000
GOLGA6B   1070000 perm   661 sec   (1619 perm/sec)   p_kst 1.167290e-03   p_cons 8.638495e-01   p_joint 3.357944e-03

Joint ci ratio: 6.490850e-02	ci left: 3.256470e-03	ci right 3.475837e-03	k: 3634	n:1080000
Cons ci ratio: 1.497445e-03	ci left: 8.632092e-01	ci right 8.645037e-01	k: 932966	n:1080000
KS ci ratio: 1.103690e-01	ci left: 1.102264e-03	ci right 1.231917e-03	k: 1259	n:1080000
GOLGA6B   1080000 perm   671 sec   (1609 perm/sec)   p_kst 1.165741e-03   p_cons 8.638574e-01   p_joint 3.364815e-03

Joint ci ratio: 6.464241e-02	ci left: 3.253671e-03	ci right 3.471917e-03	k: 3664	n:1090000
Cons ci ratio: 1.490877e-03	ci left: 8.631620e-01	ci right 8.644507e-01	k: 941550	n:1090000
KS ci ratio: 1.098904e-01	ci left: 1.101965e-03	ci right 1.230984e-03	k: 1270	n:1090000
GOLGA6B   1090000 perm   681 sec   (1600 perm/sec)   p_kst 1.165138e-03   p_cons 8.638073e-01   p_joint 3.361468e-03

Joint ci ratio: 6.430103e-02	ci left: 3.258975e-03	ci right 3.476380e-03	k: 3703	n:1100000
Cons ci ratio: 1.484022e-03	ci left: 8.631749e-01	ci right 8.644577e-01	k: 950199	n:1100000
KS ci ratio: 1.092050e-01	ci left: 1.106094e-03	ci right 1.234737e-03	k: 1286	n:1100000
GOLGA6B   1100000 perm   692 sec   (1590 perm/sec)   p_kst 1.169091e-03   p_cons 8.638173e-01   p_joint 3.366364e-03

Joint ci ratio: 6.404231e-02	ci left: 3.256209e-03	ci right 3.472522e-03	k: 3733	n:1110000
Cons ci ratio: 1.477589e-03	ci left: 8.631352e-01	ci right 8.644124e-01	k: 958790	n:1110000
KS ci ratio: 1.087413e-01	ci left: 1.105769e-03	ci right 1.233793e-03	k: 1297	n:1110000
GOLGA6B   1110000 perm   702 sec   (1580 perm/sec)   p_kst 1.168468e-03   p_cons 8.637748e-01   p_joint 3.363063e-03

Joint ci ratio: 6.381221e-02	ci left: 3.250857e-03	ci right 3.466010e-03	k: 3760	n:1120000
Cons ci ratio: 1.471178e-03	ci left: 8.631061e-01	ci right 8.643777e-01	k: 967392	n:1120000
KS ci ratio: 1.083249e-01	ci left: 1.104583e-03	ci right 1.231948e-03	k: 1307	n:1120000
GOLGA6B   1120000 perm   713 sec   (1571 perm/sec)   p_kst 1.166964e-03   p_cons 8.637429e-01   p_joint 3.357143e-03

Joint ci ratio: 6.359299e-02	ci left: 3.244730e-03	ci right 3.458713e-03	k: 3786	n:1130000
Cons ci ratio: 1.464336e-03	ci left: 8.631600e-01	ci right 8.644257e-01	k: 976087	n:1130000
KS ci ratio: 1.079543e-01	ci left: 1.102557e-03	ci right 1.229226e-03	k: 1316	n:1130000
GOLGA6B   1130000 perm   723 sec   (1563 perm/sec)   p_kst 1.164602e-03   p_cons 8.637938e-01   p_joint 3.350442e-03

Joint ci ratio: 6.329280e-02	ci left: 3.247346e-03	ci right 3.460453e-03	k: 3822	n:1140000
Cons ci ratio: 1.457872e-03	ci left: 8.631672e-01	ci right 8.644274e-01	k: 984730	n:1140000
KS ci ratio: 1.073445e-01	ci left: 1.105689e-03	ci right 1.231955e-03	k: 1331	n:1140000
GOLGA6B   1140000 perm   734 sec   (1554 perm/sec)   p_kst 1.167544e-03   p_cons 8.637982e-01   p_joint 3.352632e-03

Joint ci ratio: 6.305422e-02	ci left: 3.243927e-03	ci right 3.455978e-03	k: 3851	n:1150000
Cons ci ratio: 1.451402e-03	ci left: 8.631892e-01	ci right 8.644438e-01	k: 993390	n:1150000
KS ci ratio: 1.068244e-01	ci left: 1.107076e-03	ci right 1.232850e-03	k: 1344	n:1150000
GOLGA6B   1150000 perm   750 sec   (1533 perm/sec)   p_kst 1.168696e-03   p_cons 8.638174e-01   p_joint 3.348696e-03

Joint ci ratio: 6.281020e-02	ci left: 3.241417e-03	ci right 3.452454e-03	k: 3881	n:1160000
Cons ci ratio: 1.445467e-03	ci left: 8.631373e-01	ci right 8.643867e-01	k: 1001965	n:1160000
KS ci ratio: 1.064689e-01	ci left: 1.105084e-03	ci right 1.230187e-03	k: 1353	n:1160000
GOLGA6B   1160000 perm   764 sec   (1519 perm/sec)   p_kst 1.166379e-03   p_cons 8.637629e-01   p_joint 3.345690e-03

Joint ci ratio: 6.252091e-02	ci left: 3.244000e-03	ci right 3.454197e-03	k: 3917	n:1170000
Cons ci ratio: 1.439363e-03	ci left: 8.631258e-01	ci right 8.643699e-01	k: 1010586	n:1170000
KS ci ratio: 1.061170e-01	ci left: 1.103126e-03	ci right 1.227570e-03	k: 1362	n:1170000
GOLGA6B   1170000 perm   778 sec   (1505 perm/sec)   p_kst 1.164103e-03   p_cons 8.637487e-01   p_joint 3.347863e-03

Joint ci ratio: 6.221979e-02	ci left: 3.248210e-03	ci right 3.457630e-03	k: 3955	n:1180000
Cons ci ratio: 1.433377e-03	ci left: 8.631076e-01	ci right 8.643465e-01	k: 1019199	n:1180000
KS ci ratio: 1.055377e-01	ci left: 1.106153e-03	ci right 1.230215e-03	k: 1377	n:1180000
GOLGA6B   1180000 perm   790 sec   (1494 perm/sec)   p_kst 1.166949e-03   p_cons 8.637280e-01   p_joint 3.351695e-03

Joint ci ratio: 6.199310e-02	ci left: 3.244905e-03	ci right 3.453322e-03	k: 3984	n:1190000
Cons ci ratio: 1.427211e-03	ci left: 8.631319e-01	ci right 8.643655e-01	k: 1027862	n:1190000
KS ci ratio: 1.049301e-01	ci left: 1.109949e-03	ci right 1.233676e-03	k: 1393	n:1190000
GOLGA6B   1190000 perm   801 sec   (1486 perm/sec)   p_kst 1.170588e-03   p_cons 8.637496e-01   p_joint 3.347899e-03

Joint ci ratio: 6.174572e-02	ci left: 3.244118e-03	ci right 3.451624e-03	k: 4016	n:1200000
Cons ci ratio: 1.421154e-03	ci left: 8.631508e-01	ci right 8.643791e-01	k: 1036519	n:1200000
KS ci ratio: 1.044070e-01	ci left: 1.112061e-03	ci right 1.235367e-03	k: 1407	n:1200000
GOLGA6B   1200000 perm   812 sec   (1477 perm/sec)   p_kst 1.172500e-03   p_cons 8.637658e-01   p_joint 3.346667e-03

Joint ci ratio: 6.150128e-02	ci left: 3.243346e-03	ci right 3.449952e-03	k: 4048	n:1210000
Cons ci ratio: 1.415153e-03	ci left: 8.631727e-01	ci right 8.643958e-01	k: 1045180	n:1210000
KS ci ratio: 1.040750e-01	ci left: 1.110114e-03	ci right 1.232789e-03	k: 1416	n:1210000
GOLGA6B   1210000 perm   824 sec   (1469 perm/sec)   p_kst 1.170248e-03   p_cons 8.637851e-01   p_joint 3.345455e-03

Joint ci ratio: 6.127479e-02	ci left: 3.240974e-03	ci right 3.446641e-03	k: 4078	n:1220000
Cons ci ratio: 1.409124e-03	ci left: 8.632114e-01	ci right 8.644295e-01	k: 1053862	n:1220000
KS ci ratio: 1.036008e-01	ci left: 1.111394e-03	ci right 1.233617e-03	k: 1429	n:1220000
GOLGA6B   1220000 perm   836 sec   (1460 perm/sec)   p_kst 1.171311e-03   p_cons 8.638213e-01   p_joint 3.342623e-03

Joint ci ratio: 6.092445e-02	ci left: 3.252252e-03	ci right 3.457414e-03	k: 4125	n:1230000
Cons ci ratio: 1.403434e-03	ci left: 8.632056e-01	ci right 8.644187e-01	k: 1062490	n:1230000
KS ci ratio: 1.029546e-01	ci left: 1.116615e-03	ci right 1.238599e-03	k: 1447	n:1230000
GOLGA6B   1230000 perm   847 sec   (1451 perm/sec)   p_kst 1.176423e-03   p_cons 8.638130e-01   p_joint 3.353659e-03

Joint ci ratio: 6.064571e-02	ci left: 3.256204e-03	ci right 3.460643e-03	k: 4163	n:1240000
Cons ci ratio: 1.397716e-03	ci left: 8.632160e-01	ci right 8.644242e-01	k: 1071138	n:1240000
KS ci ratio: 1.023204e-01	ci left: 1.121754e-03	ci right 1.243499e-03	k: 1465	n:1240000
GOLGA6B   1240000 perm   859 sec   (1443 perm/sec)   p_kst 1.181452e-03   p_cons 8.638210e-01   p_joint 3.357258e-03

Joint ci ratio: 6.042851e-02	ci left: 3.253791e-03	ci right 3.457321e-03	k: 4193	n:1250000
Cons ci ratio: 1.392082e-03	ci left: 8.632239e-01	ci right 8.644272e-01	k: 1079783	n:1250000
KS ci ratio: 1.020078e-01	ci left: 1.119795e-03	ci right 1.240935e-03	k: 1474	n:1250000
GOLGA6B   1250000 perm   871 sec   (1436 perm/sec)   p_kst 1.179200e-03   p_cons 8.638264e-01   p_joint 3.354400e-03

Joint ci ratio: 6.010663e-02	ci left: 3.263144e-03	ci right 3.466134e-03	k: 4238	n:1260000
Cons ci ratio: 1.386380e-03	ci left: 8.632547e-01	ci right 8.644531e-01	k: 1088457	n:1260000
KS ci ratio: 1.015954e-01	ci left: 1.120190e-03	ci right 1.240852e-03	k: 1486	n:1260000
GOLGA6B   1260000 perm   883 sec   (1427 perm/sec)   p_kst 1.179365e-03   p_cons 8.638548e-01   p_joint 3.363492e-03

Joint ci ratio: 5.992333e-02	ci left: 3.257615e-03	ci right 3.459621e-03	k: 4264	n:1270000
Cons ci ratio: 1.380909e-03	ci left: 8.632575e-01	ci right 8.644511e-01	k: 1097096	n:1270000
KS ci ratio: 1.011879e-01	ci left: 1.120578e-03	ci right 1.240770e-03	k: 1498	n:1270000
GOLGA6B   1270000 perm   895 sec   (1419 perm/sec)   p_kst 1.179528e-03   p_cons 8.638551e-01   p_joint 3.357480e-03

Joint ci ratio: 5.969982e-02	ci left: 3.256791e-03	ci right 3.457967e-03	k: 4296	n:1280000
Cons ci ratio: 1.375511e-03	ci left: 8.632586e-01	ci right 8.644476e-01	k: 1105733	n:1280000
KS ci ratio: 1.008187e-01	ci left: 1.120200e-03	ci right 1.239887e-03	k: 1509	n:1280000
GOLGA6B   1280000 perm   907 sec   (1411 perm/sec)   p_kst 1.178906e-03   p_cons 8.638539e-01   p_joint 3.356250e-03

Joint ci ratio: 5.943748e-02	ci left: 3.260563e-03	ci right 3.461057e-03	k: 4334	n:1290000
Cons ci ratio: 1.370289e-03	ci left: 8.632403e-01	ci right 8.644247e-01	k: 1114345	n:1290000
KS ci ratio: 1.003215e-01	ci left: 1.122852e-03	ci right 1.242196e-03	k: 1524	n:1290000
GOLGA6B   1290000 perm   919 sec   (1403 perm/sec)   p_kst 1.181395e-03   p_cons 8.638333e-01   p_joint 3.359690e-03

Joint ci ratio: 5.922615e-02	ci left: 3.258974e-03	ci right 3.458633e-03	k: 4365	n:1300000
Cons ci ratio: 1.365037e-03	ci left: 8.632377e-01	ci right 8.644176e-01	k: 1122977	n:1300000
KS ci ratio: 1.000596e-01	ci left: 1.120215e-03	ci right 1.238949e-03	k: 1532	n:1300000
GOLGA6B   1300000 perm   932 sec   (1396 perm/sec)   p_kst 1.178462e-03   p_cons 8.638285e-01   p_joint 3.357692e-03

Joint ci ratio: 5.899015e-02	ci left: 3.260419e-03	ci right 3.459344e-03	k: 4400	n:1310000
Cons ci ratio: 1.359703e-03	ci left: 8.632596e-01	ci right 8.644349e-01	k: 1131641	n:1310000
KS ci ratio: 9.957348e-02	ci left: 1.122828e-03	ci right 1.241227e-03	k: 1547	n:1310000
GOLGA6B   1310000 perm   943 sec   (1388 perm/sec)   p_kst 1.180916e-03   p_cons 8.638481e-01   p_joint 3.358779e-03

Outputting figure to mutsig2_images.part000000000072/GOLGA6B.2_2047_1310000_0.0011809_0.86385_0.0033588.png
                gene_name: GOLGA6B
               theta_stop: 0.100 
                    nperm: 1310000 
                     p_ks: 0.0012 
        ci_ks_bounds_left: 0.0011 
       ci_ks_bounds_right: 0.0012 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.0034 
     ci_joint_bounds_left: 0.0033 
    ci_joint_bounds_right: 0.0035 

Current progress: 50 percent done.
GPATCH4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.163954e-01	ci left: 1.379226e-03	ci right 3.328943e-03	k: 22	n:10000
Cons ci ratio: 6.383989e-02	ci left: 2.649783e-01	ci right 2.825537e-01	k: 2737	n:10000
KS ci ratio: 1.181215e+00	ci left: 4.796397e-04	ci right 1.838264e-03	k: 10	n:10000
GPATCH4   10000 perm   1 sec   (6877 perm/sec)   p_kst 1.000000e-03   p_cons 2.737000e-01   p_joint 2.200000e-03

Joint ci ratio: 5.327106e-01	ci left: 1.985643e-03	ci right 3.464850e-03	k: 53	n:20000
Cons ci ratio: 4.522718e-02	ci left: 2.668341e-01	ci right 2.792319e-01	k: 5460	n:20000
KS ci ratio: 9.503118e-01	ci left: 4.573361e-04	ci right 1.298826e-03	k: 16	n:20000
GPATCH4   20000 perm   3 sec   (6038 perm/sec)   p_kst 8.000000e-04   p_cons 2.730000e-01   p_joint 2.650000e-03

Joint ci ratio: 4.220912e-01	ci left: 2.263774e-03	ci right 3.502286e-03	k: 85	n:30000
Cons ci ratio: 3.575355e-02	ci left: 2.809239e-01	ci right 2.911842e-01	k: 8581	n:30000
KS ci ratio: 7.540522e-01	ci left: 5.662111e-04	ci right 1.269611e-03	k: 26	n:30000
GPATCH4   30000 perm   5 sec   (5736 perm/sec)   p_kst 8.666667e-04   p_cons 2.860333e-01   p_joint 2.833333e-03

Joint ci ratio: 6.194887e-01	ci left: 6.934093e-04	ci right 1.332619e-03	k: 39	n:40000
Cons ci ratio: 3.097046e-02	ci left: 2.815250e-01	ci right 2.904061e-01	k: 11438	n:40000
KS ci ratio: 6.118797e-01	ci left: 7.145078e-04	ci right 1.361470e-03	k: 40	n:40000
GPATCH4   40000 perm   7 sec   (5528 perm/sec)   p_kst 1.000000e-03   p_cons 2.859500e-01   p_joint 9.750000e-04

Joint ci ratio: 6.530916e-01	ci left: 4.876226e-04	ci right 9.733974e-04	k: 35	n:50000
Cons ci ratio: 2.771135e-02	ci left: 2.818424e-01	ci right 2.897824e-01	k: 14290	n:50000
KS ci ratio: 5.433180e-01	ci left: 7.595484e-04	ci right 1.340896e-03	k: 51	n:50000
GPATCH4   50000 perm   9 sec   (5369 perm/sec)   p_kst 1.020000e-03   p_cons 2.858000e-01   p_joint 7.000000e-04

Joint ci ratio: 5.841351e-01	ci left: 5.328901e-04	ci right 9.843421e-04	k: 44	n:60000
Cons ci ratio: 2.530847e-02	ci left: 2.820044e-01	ci right 2.892497e-01	k: 17137	n:60000
KS ci ratio: 5.058125e-01	ci left: 7.486406e-04	ci right 1.268248e-03	k: 59	n:60000
GPATCH4   60000 perm   11 sec   (5235 perm/sec)   p_kst 9.833333e-04   p_cons 2.856167e-01   p_joint 7.333333e-04

Joint ci ratio: 5.598000e-01	ci left: 5.056335e-04	ci right 9.090561e-04	k: 48	n:70000
Cons ci ratio: 2.338879e-02	ci left: 2.830101e-01	ci right 2.897219e-01	k: 20045	n:70000
KS ci ratio: 4.682920e-01	ci left: 7.670230e-04	ci right 1.247321e-03	k: 69	n:70000
GPATCH4   70000 perm   14 sec   (5086 perm/sec)   p_kst 9.857143e-04   p_cons 2.863571e-01   p_joint 6.857143e-04

Joint ci ratio: 5.434261e-01	ci left: 4.746963e-04	ci right 8.381106e-04	k: 51	n:80000
Cons ci ratio: 2.189208e-02	ci left: 2.829698e-01	ci right 2.892457e-01	k: 22888	n:80000
KS ci ratio: 4.585891e-01	ci left: 7.042591e-04	ci right 1.133269e-03	k: 72	n:80000
GPATCH4   80000 perm   16 sec   (4969 perm/sec)   p_kst 9.000000e-04   p_cons 2.861000e-01   p_joint 6.375000e-04

Joint ci ratio: 5.145525e-01	ci left: 4.797147e-04	ci right 8.204800e-04	k: 57	n:90000
Cons ci ratio: 2.061601e-02	ci left: 2.836251e-01	ci right 2.895443e-01	k: 25792	n:90000
KS ci ratio: 4.408384e-01	ci left: 6.851225e-04	ci right 1.081523e-03	k: 78	n:90000
GPATCH4   90000 perm   18 sec   (4868 perm/sec)   p_kst 8.666667e-04   p_cons 2.865778e-01   p_joint 6.333333e-04

Joint ci ratio: 5.434621e-01	ci left: 3.797513e-04	ci right 6.705020e-04	k: 51	n:100000
Cons ci ratio: 1.954176e-02	ci left: 2.841177e-01	ci right 2.897346e-01	k: 28692	n:100000
KS ci ratio: 4.225206e-01	ci left: 6.790045e-04	ci right 1.050932e-03	k: 85	n:100000
GPATCH4   100000 perm   21 sec   (4776 perm/sec)   p_kst 8.500000e-04   p_cons 2.869200e-01   p_joint 5.100000e-04

Joint ci ratio: 5.778490e-01	ci left: 2.984089e-04	ci right 5.473580e-04	k: 45	n:110000
Cons ci ratio: 1.859239e-02	ci left: 2.851256e-01	ci right 2.904856e-01	k: 31658	n:110000
KS ci ratio: 3.999069e-01	ci left: 6.987878e-04	ci right 1.055649e-03	k: 95	n:110000
GPATCH4   110000 perm   23 sec   (4688 perm/sec)   p_kst 8.636364e-04   p_cons 2.878000e-01   p_joint 4.090909e-04

Joint ci ratio: 4.860824e-01	ci left: 4.107551e-04	ci right 6.810045e-04	k: 64	n:120000
Cons ci ratio: 1.780379e-02	ci left: 2.851729e-01	ci right 2.903040e-01	k: 34528	n:120000
KS ci ratio: 3.787901e-01	ci left: 7.232559e-04	ci right 1.068267e-03	k: 106	n:120000
GPATCH4   120000 perm   26 sec   (4603 perm/sec)   p_kst 8.833333e-04   p_cons 2.877333e-01   p_joint 5.333333e-04

Joint ci ratio: 5.656966e-01	ci left: 2.656566e-04	ci right 4.807408e-04	k: 47	n:130000
Cons ci ratio: 1.711414e-02	ci left: 2.850636e-01	ci right 2.899920e-01	k: 37378	n:130000
KS ci ratio: 3.576788e-01	ci left: 7.583769e-04	ci right 1.095296e-03	k: 119	n:130000
GPATCH4   130000 perm   29 sec   (4501 perm/sec)   p_kst 9.153846e-04   p_cons 2.875231e-01   p_joint 3.615385e-04

Joint ci ratio: 5.333396e-01	ci left: 2.835884e-04	ci right 4.951519e-04	k: 53	n:140000
Cons ci ratio: 1.648823e-02	ci left: 2.852369e-01	ci right 2.899862e-01	k: 40265	n:140000
KS ci ratio: 3.449765e-01	ci left: 7.628217e-04	ci right 1.086995e-03	k: 128	n:140000
GPATCH4   140000 perm   32 sec   (4423 perm/sec)   p_kst 9.142857e-04   p_cons 2.876071e-01   p_joint 3.785714e-04

Joint ci ratio: 5.059669e-01	ci left: 2.994366e-04	ci right 5.073424e-04	k: 59	n:150000
Cons ci ratio: 1.591520e-02	ci left: 2.856759e-01	ci right 2.902656e-01	k: 43195	n:150000
KS ci ratio: 3.311447e-01	ci left: 7.790789e-04	ci right 1.094060e-03	k: 139	n:150000
GPATCH4   150000 perm   34 sec   (4348 perm/sec)   p_kst 9.266667e-04   p_cons 2.879667e-01   p_joint 3.933333e-04

Joint ci ratio: 4.899005e-01	ci left: 3.025812e-04	ci right 5.037496e-04	k: 63	n:160000
Cons ci ratio: 1.542199e-02	ci left: 2.854265e-01	ci right 2.898687e-01	k: 46023	n:160000
KS ci ratio: 3.188535e-01	ci left: 7.935307e-04	ci right 1.100018e-03	k: 150	n:160000
GPATCH4   160000 perm   37 sec   (4274 perm/sec)   p_kst 9.375000e-04   p_cons 2.876437e-01   p_joint 3.937500e-04

Joint ci ratio: 4.824236e-01	ci left: 2.951039e-04	ci right 4.873146e-04	k: 65	n:170000
Cons ci ratio: 1.495519e-02	ci left: 2.856662e-01	ci right 2.899764e-01	k: 48929	n:170000
KS ci ratio: 3.147175e-01	ci left: 7.685096e-04	ci right 1.060708e-03	k: 154	n:170000
GPATCH4   170000 perm   40 sec   (4204 perm/sec)   p_kst 9.058824e-04   p_cons 2.878176e-01   p_joint 3.823529e-04

Joint ci ratio: 4.718208e-01	ci left: 2.933708e-04	ci right 4.788991e-04	k: 68	n:180000
Cons ci ratio: 1.454019e-02	ci left: 2.855484e-01	ci right 2.897362e-01	k: 51775	n:180000
KS ci ratio: 3.068982e-01	ci left: 7.667932e-04	ci right 1.049679e-03	k: 162	n:180000
GPATCH4   180000 perm   44 sec   (4132 perm/sec)   p_kst 9.000000e-04   p_cons 2.876389e-01   p_joint 3.777778e-04

Joint ci ratio: 4.618877e-01	ci left: 2.918616e-04	ci right 4.713288e-04	k: 71	n:190000
Cons ci ratio: 1.416192e-02	ci left: 2.853290e-01	ci right 2.894038e-01	k: 54599	n:190000
KS ci ratio: 3.005150e-01	ci left: 7.604704e-04	ci right 1.034075e-03	k: 169	n:190000
GPATCH4   190000 perm   47 sec   (4031 perm/sec)   p_kst 8.894737e-04   p_cons 2.873632e-01   p_joint 3.736842e-04

Joint ci ratio: 4.587164e-01	ci left: 2.816882e-04	ci right 4.533393e-04	k: 72	n:200000
Cons ci ratio: 1.380075e-02	ci left: 2.854572e-01	ci right 2.894290e-01	k: 57488	n:200000
KS ci ratio: 2.953503e-01	ci left: 7.502043e-04	ci right 1.014608e-03	k: 175	n:200000
GPATCH4   200000 perm   51 sec   (3951 perm/sec)   p_kst 8.750000e-04   p_cons 2.874400e-01   p_joint 3.600000e-04

Joint ci ratio: 4.409504e-01	ci left: 2.936096e-04	ci right 4.635383e-04	k: 78	n:210000
Cons ci ratio: 1.346290e-02	ci left: 2.856646e-01	ci right 2.895413e-01	k: 60396	n:210000
KS ci ratio: 2.857667e-01	ci left: 7.674609e-04	ci right 1.027586e-03	k: 187	n:210000
GPATCH4   210000 perm   54 sec   (3883 perm/sec)   p_kst 8.904762e-04   p_cons 2.876000e-01   p_joint 3.714286e-04

Joint ci ratio: 4.328099e-01	ci left: 2.923999e-04	ci right 4.575959e-04	k: 81	n:220000
Cons ci ratio: 1.316141e-02	ci left: 2.854596e-01	ci right 2.892460e-01	k: 63217	n:220000
KS ci ratio: 2.813148e-01	ci left: 7.579093e-04	ci right 1.010086e-03	k: 193	n:220000
GPATCH4   220000 perm   58 sec   (3792 perm/sec)   p_kst 8.772727e-04   p_cons 2.873500e-01   p_joint 3.681818e-04

Joint ci ratio: 4.226245e-01	ci left: 2.952059e-04	ci right 4.569531e-04	k: 85	n:230000
Cons ci ratio: 1.286631e-02	ci left: 2.856856e-01	ci right 2.893894e-01	k: 66133	n:230000
KS ci ratio: 2.729964e-01	ci left: 7.735065e-04	ci right 1.021958e-03	k: 205	n:230000
GPATCH4   230000 perm   62 sec   (3725 perm/sec)   p_kst 8.913043e-04   p_cons 2.875348e-01   p_joint 3.695652e-04

Joint ci ratio: 4.201911e-01	ci left: 2.866301e-04	ci right 4.425201e-04	k: 86	n:240000
Cons ci ratio: 1.259495e-02	ci left: 2.857397e-01	ci right 2.893655e-01	k: 69012	n:240000
KS ci ratio: 2.697447e-01	ci left: 7.606924e-04	ci right 1.001625e-03	k: 210	n:240000
GPATCH4   240000 perm   65 sec   (3670 perm/sec)   p_kst 8.750000e-04   p_cons 2.875500e-01   p_joint 3.583333e-04

Joint ci ratio: 4.042403e-01	ci left: 3.002622e-04	ci right 4.557061e-04	k: 93	n:250000
Cons ci ratio: 1.233922e-02	ci left: 2.858182e-01	ci right 2.893708e-01	k: 71898	n:250000
KS ci ratio: 2.617981e-01	ci left: 7.788019e-04	ci right 1.017014e-03	k: 223	n:250000
GPATCH4   250000 perm   69 sec   (3615 perm/sec)   p_kst 8.920000e-04   p_cons 2.875920e-01   p_joint 3.720000e-04

Joint ci ratio: 3.938991e-01	ci left: 3.060146e-04	ci right 4.593296e-04	k: 98	n:260000
Cons ci ratio: 1.210039e-02	ci left: 2.858260e-01	ci right 2.893095e-01	k: 74767	n:260000
KS ci ratio: 2.572453e-01	ci left: 7.776158e-04	ci right 1.010665e-03	k: 231	n:260000
GPATCH4   260000 perm   73 sec   (3559 perm/sec)   p_kst 8.884615e-04   p_cons 2.875654e-01   p_joint 3.769231e-04

Joint ci ratio: 3.861747e-01	ci left: 3.080428e-04	ci right 4.585779e-04	k: 102	n:270000
Cons ci ratio: 1.187921e-02	ci left: 2.856860e-01	ci right 2.891037e-01	k: 77596	n:270000
KS ci ratio: 2.539834e-01	ci left: 7.696134e-04	ci right 9.968761e-04	k: 237	n:270000
GPATCH4   270000 perm   77 sec   (3491 perm/sec)   p_kst 8.777778e-04   p_cons 2.873926e-01   p_joint 3.777778e-04

Joint ci ratio: 3.843155e-01	ci left: 3.002665e-04	ci right 4.461163e-04	k: 103	n:280000
Cons ci ratio: 1.166616e-02	ci left: 2.856814e-01	ci right 2.890373e-01	k: 80460	n:280000
KS ci ratio: 2.508425e-01	ci left: 7.621999e-04	ci right 9.840552e-04	k: 243	n:280000
GPATCH4   280000 perm   81 sec   (3443 perm/sec)   p_kst 8.678571e-04   p_cons 2.873571e-01   p_joint 3.678571e-04

Joint ci ratio: 3.753967e-01	ci left: 3.055079e-04	ci right 4.496127e-04	k: 108	n:290000
Cons ci ratio: 1.146544e-02	ci left: 2.856328e-01	ci right 2.889300e-01	k: 83311	n:290000
KS ci ratio: 2.473207e-01	ci left: 7.585483e-04	ci right 9.757642e-04	k: 250	n:290000
GPATCH4   290000 perm   86 sec   (3390 perm/sec)   p_kst 8.620690e-04   p_cons 2.872793e-01   p_joint 3.724138e-04

Joint ci ratio: 3.824852e-01	ci left: 2.832603e-04	ci right 4.200293e-04	k: 104	n:300000
Cons ci ratio: 1.127106e-02	ci left: 2.857211e-01	ci right 2.889630e-01	k: 86202	n:300000
KS ci ratio: 2.430023e-01	ci left: 7.614207e-04	ci right 9.750778e-04	k: 259	n:300000
GPATCH4   300000 perm   90 sec   (3344 perm/sec)   p_kst 8.633333e-04   p_cons 2.873400e-01   p_joint 3.466667e-04

Joint ci ratio: 4.021212e-01	ci left: 2.450441e-04	ci right 3.710590e-04	k: 94	n:310000
Cons ci ratio: 1.108415e-02	ci left: 2.858814e-01	ci right 2.890710e-01	k: 89117	n:310000
KS ci ratio: 2.402471e-01	ci left: 7.550415e-04	ci right 9.641486e-04	k: 265	n:310000
GPATCH4   310000 perm   94 sec   (3301 perm/sec)   p_kst 8.548387e-04   p_cons 2.874742e-01   p_joint 3.032258e-04

Joint ci ratio: 3.979547e-01	ci left: 2.430075e-04	ci right 3.663392e-04	k: 96	n:320000
Cons ci ratio: 1.090749e-02	ci left: 2.859853e-01	ci right 2.891248e-01	k: 92017	n:320000
KS ci ratio: 2.367141e-01	ci left: 7.549527e-04	ci right 9.605100e-04	k: 273	n:320000
GPATCH4   320000 perm   98 sec   (3254 perm/sec)   p_kst 8.531250e-04   p_cons 2.875531e-01   p_joint 3.000000e-04

Joint ci ratio: 3.861882e-01	ci left: 2.520335e-04	ci right 3.752029e-04	k: 102	n:330000
Cons ci ratio: 1.073997e-02	ci left: 2.860469e-01	ci right 2.891386e-01	k: 94905	n:330000
KS ci ratio: 2.329195e-01	ci left: 7.577439e-04	ci right 9.602777e-04	k: 282	n:330000
GPATCH4   330000 perm   103 sec   (3210 perm/sec)   p_kst 8.545455e-04   p_cons 2.875909e-01   p_joint 3.090909e-04

Joint ci ratio: 3.861900e-01	ci left: 2.446206e-04	ci right 3.641678e-04	k: 102	n:340000
Cons ci ratio: 1.058183e-02	ci left: 2.860319e-01	ci right 2.890776e-01	k: 97768	n:340000
KS ci ratio: 2.308900e-01	ci left: 7.493084e-04	ci right 9.475935e-04	k: 287	n:340000
GPATCH4   340000 perm   107 sec   (3163 perm/sec)   p_kst 8.441176e-04   p_cons 2.875529e-01   p_joint 3.000000e-04

Joint ci ratio: 3.806859e-01	ci left: 2.453766e-04	ci right 3.631568e-04	k: 105	n:350000
Cons ci ratio: 1.042321e-02	ci left: 2.863033e-01	ci right 2.893059e-01	k: 100731	n:350000
KS ci ratio: 2.269825e-01	ci left: 7.548329e-04	ci right 9.507262e-04	k: 297	n:350000
GPATCH4   350000 perm   112 sec   (3117 perm/sec)   p_kst 8.485714e-04   p_cons 2.878029e-01   p_joint 3.000000e-04

Joint ci ratio: 3.720121e-01	ci left: 2.511360e-04	ci right 3.682655e-04	k: 110	n:360000
Cons ci ratio: 1.027812e-02	ci left: 2.862964e-01	ci right 2.892570e-01	k: 103599	n:360000
KS ci ratio: 2.236305e-01	ci left: 7.574545e-04	ci right 9.507256e-04	k: 306	n:360000
GPATCH4   360000 perm   117 sec   (3080 perm/sec)   p_kst 8.500000e-04   p_cons 2.877750e-01   p_joint 3.055556e-04

Joint ci ratio: 3.654846e-01	ci left: 2.541577e-04	ci right 3.701205e-04	k: 114	n:370000
Cons ci ratio: 1.013780e-02	ci left: 2.863361e-01	ci right 2.892564e-01	k: 106484	n:370000
KS ci ratio: 2.204227e-01	ci left: 7.599546e-04	ci right 9.507050e-04	k: 315	n:370000
GPATCH4   370000 perm   122 sec   (3037 perm/sec)   p_kst 8.513514e-04   p_cons 2.877946e-01   p_joint 3.081081e-04

Joint ci ratio: 3.623479e-01	ci left: 2.522512e-04	ci right 3.661229e-04	k: 116	n:380000
Cons ci ratio: 9.998442e-03	ci left: 2.865632e-01	ci right 2.894453e-01	k: 109441	n:380000
KS ci ratio: 2.176846e-01	ci left: 7.598534e-04	ci right 9.478924e-04	k: 323	n:380000
GPATCH4   380000 perm   127 sec   (2995 perm/sec)   p_kst 8.500000e-04   p_cons 2.880026e-01   p_joint 3.052632e-04

Joint ci ratio: 3.548442e-01	ci left: 2.574490e-04	ci right 3.707056e-04	k: 121	n:390000
Cons ci ratio: 9.865357e-03	ci left: 2.867506e-01	ci right 2.895961e-01	k: 112387	n:390000
KS ci ratio: 2.137611e-01	ci left: 7.694773e-04	ci right 9.560159e-04	k: 335	n:390000
GPATCH4   390000 perm   132 sec   (2953 perm/sec)   p_kst 8.589744e-04   p_cons 2.881718e-01   p_joint 3.102564e-04

Joint ci ratio: 3.491659e-01	ci left: 2.601287e-04	ci right 3.723185e-04	k: 125	n:400000
Cons ci ratio: 9.736023e-03	ci left: 2.869889e-01	ci right 2.897992e-01	k: 115357	n:400000
KS ci ratio: 2.100424e-01	ci left: 7.786489e-04	ci right 9.637046e-04	k: 347	n:400000
GPATCH4   400000 perm   137 sec   (2922 perm/sec)   p_kst 8.675000e-04   p_cons 2.883925e-01   p_joint 3.125000e-04

Joint ci ratio: 3.437518e-01	ci left: 2.626915e-04	ci right 3.738392e-04	k: 129	n:410000
Cons ci ratio: 9.617527e-03	ci left: 2.869649e-01	ci right 2.897405e-01	k: 118224	n:410000
KS ci ratio: 2.079617e-01	ci left: 7.758369e-04	ci right 9.581653e-04	k: 354	n:410000
GPATCH4   410000 perm   142 sec   (2891 perm/sec)   p_kst 8.634146e-04   p_cons 2.883512e-01   p_joint 3.146341e-04

Joint ci ratio: 3.424382e-01	ci left: 2.586126e-04	ci right 3.675237e-04	k: 130	n:420000
Cons ci ratio: 9.502317e-03	ci left: 2.869827e-01	ci right 2.897250e-01	k: 121108	n:420000
KS ci ratio: 2.059416e-01	ci left: 7.731675e-04	ci right 9.528812e-04	k: 361	n:420000
GPATCH4   420000 perm   147 sec   (2856 perm/sec)   p_kst 8.595238e-04   p_cons 2.883524e-01   p_joint 3.095238e-04

Joint ci ratio: 3.385833e-01	ci left: 2.589786e-04	ci right 3.665477e-04	k: 133	n:430000
Cons ci ratio: 9.388598e-03	ci left: 2.871113e-01	ci right 2.898218e-01	k: 124040	n:430000
KS ci ratio: 2.037032e-01	ci left: 7.728373e-04	ci right 9.502787e-04	k: 369	n:430000
GPATCH4   430000 perm   152 sec   (2824 perm/sec)   p_kst 8.581395e-04   p_cons 2.884651e-01   p_joint 3.093023e-04

Joint ci ratio: 3.336398e-01	ci left: 2.614165e-04	ci right 3.680723e-04	k: 137	n:440000
Cons ci ratio: 9.273424e-03	ci left: 2.874748e-01	ci right 2.901553e-01	k: 127078	n:440000
KS ci ratio: 2.020719e-01	ci left: 7.682162e-04	ci right 9.430100e-04	k: 375	n:440000
GPATCH4   440000 perm   157 sec   (2794 perm/sec)   p_kst 8.522727e-04   p_cons 2.888136e-01   p_joint 3.113636e-04

Joint ci ratio: 3.005931e-01	ci left: 3.210760e-04	ci right 4.366275e-04	k: 169	n:450000
Cons ci ratio: 9.163816e-03	ci left: 2.877579e-01	ci right 2.904092e-01	k: 130087	n:450000
KS ci ratio: 1.989218e-01	ci left: 7.764731e-04	ci right 9.500573e-04	k: 387	n:450000
GPATCH4   450000 perm   163 sec   (2765 perm/sec)   p_kst 8.600000e-04   p_cons 2.890822e-01   p_joint 3.755556e-04

Joint ci ratio: 3.005944e-01	ci left: 3.140959e-04	ci right 4.271359e-04	k: 169	n:460000
Cons ci ratio: 9.061354e-03	ci left: 2.878770e-01	ci right 2.904996e-01	k: 133026	n:460000
KS ci ratio: 1.971517e-01	ci left: 7.740560e-04	ci right 9.453750e-04	k: 394	n:460000
GPATCH4   460000 perm   168 sec   (2737 perm/sec)   p_kst 8.565217e-04   p_cons 2.891870e-01   p_joint 3.673913e-04

Joint ci ratio: 2.979769e-01	ci left: 3.133168e-04	ci right 4.249088e-04	k: 172	n:470000
Cons ci ratio: 8.966940e-03	ci left: 2.877765e-01	ci right 2.903707e-01	k: 135864	n:470000
KS ci ratio: 1.954280e-01	ci left: 7.717483e-04	ci right 9.408855e-04	k: 401	n:470000
GPATCH4   470000 perm   173 sec   (2709 perm/sec)   p_kst 8.531915e-04   p_cons 2.890723e-01   p_joint 3.659574e-04

Joint ci ratio: 2.624414e-01	ci left: 4.036689e-04	ci right 5.274909e-04	k: 222	n:480000
Cons ci ratio: 8.875595e-03	ci left: 2.876721e-01	ci right 2.902388e-01	k: 138698	n:480000
KS ci ratio: 1.925742e-01	ci left: 7.794563e-04	ci right 9.474960e-04	k: 413	n:480000
GPATCH4   480000 perm   179 sec   (2682 perm/sec)   p_kst 8.604167e-04   p_cons 2.889542e-01   p_joint 4.625000e-04

Joint ci ratio: 2.612731e-01	ci left: 3.992444e-04	ci right 5.210749e-04	k: 224	n:490000
Cons ci ratio: 8.784585e-03	ci left: 2.876841e-01	ci right 2.902245e-01	k: 141587	n:490000
KS ci ratio: 1.909668e-01	ci left: 7.771488e-04	ci right 9.431303e-04	k: 420	n:490000
GPATCH4   490000 perm   185 sec   (2650 perm/sec)   p_kst 8.571429e-04   p_cons 2.889531e-01   p_joint 4.571429e-04

Joint ci ratio: 2.601202e-01	ci left: 3.949980e-04	ci right 5.149144e-04	k: 226	n:500000
Cons ci ratio: 8.697039e-03	ci left: 2.876619e-01	ci right 2.901766e-01	k: 144459	n:500000
KS ci ratio: 1.889577e-01	ci left: 7.787499e-04	ci right 9.431226e-04	k: 429	n:500000
GPATCH4   500000 perm   191 sec   (2624 perm/sec)   p_kst 8.580000e-04   p_cons 2.889180e-01   p_joint 4.520000e-04

Joint ci ratio: 2.589825e-01	ci left: 3.909193e-04	ci right 5.089943e-04	k: 228	n:510000
Cons ci ratio: 8.614237e-03	ci left: 2.875368e-01	ci right 2.900264e-01	k: 147278	n:510000
KS ci ratio: 1.880858e-01	ci left: 7.709530e-04	ci right 9.328433e-04	k: 433	n:510000
GPATCH4   510000 perm   196 sec   (2598 perm/sec)   p_kst 8.490196e-04   p_cons 2.887804e-01   p_joint 4.470588e-04

Joint ci ratio: 2.584197e-01	ci left: 3.851998e-04	ci right 5.012537e-04	k: 229	n:520000
Cons ci ratio: 8.533796e-03	ci left: 2.874148e-01	ci right 2.898799e-01	k: 150096	n:520000
KS ci ratio: 1.857461e-01	ci left: 7.762912e-04	ci right 9.370463e-04	k: 444	n:520000
GPATCH4   520000 perm   202 sec   (2575 perm/sec)   p_kst 8.538462e-04   p_cons 2.886462e-01   p_joint 4.403846e-04

Joint ci ratio: 2.545742e-01	ci left: 3.902906e-04	ci right 5.058506e-04	k: 236	n:530000
Cons ci ratio: 8.453001e-03	ci left: 2.874218e-01	ci right 2.898635e-01	k: 152980	n:530000
KS ci ratio: 1.832906e-01	ci left: 7.832402e-04	ci right 9.430519e-04	k: 456	n:530000
GPATCH4   530000 perm   208 sec   (2549 perm/sec)   p_kst 8.603774e-04   p_cons 2.886415e-01   p_joint 4.452830e-04

Joint ci ratio: 2.519304e-01	ci left: 3.917346e-04	ci right 5.063287e-04	k: 241	n:540000
Cons ci ratio: 8.375970e-03	ci left: 2.873547e-01	ci right 2.897735e-01	k: 155824	n:540000
KS ci ratio: 1.811234e-01	ci left: 7.881772e-04	ci right 9.468862e-04	k: 467	n:540000
GPATCH4   540000 perm   214 sec   (2526 perm/sec)   p_kst 8.648148e-04   p_cons 2.885630e-01   p_joint 4.462963e-04

Joint ci ratio: 2.468800e-01	ci left: 4.016580e-04	ci right 5.164382e-04	k: 251	n:550000
Cons ci ratio: 8.298617e-03	ci left: 2.874082e-01	ci right 2.898050e-01	k: 158733	n:550000
KS ci ratio: 1.781032e-01	ci left: 8.016303e-04	ci right 9.600669e-04	k: 483	n:550000
GPATCH4   550000 perm   220 sec   (2504 perm/sec)   p_kst 8.781818e-04   p_cons 2.886055e-01   p_joint 4.563636e-04

Joint ci ratio: 2.711012e-01	ci left: 3.226714e-04	ci right 4.254703e-04	k: 208	n:560000
Cons ci ratio: 8.222510e-03	ci left: 2.875026e-01	ci right 2.898781e-01	k: 161666	n:560000
KS ci ratio: 1.762912e-01	ci left: 8.043807e-04	ci right 9.615710e-04	k: 493	n:560000
GPATCH4   560000 perm   225 sec   (2484 perm/sec)   p_kst 8.803571e-04   p_cons 2.886893e-01   p_joint 3.714286e-04

Joint ci ratio: 2.672911e-01	ci left: 3.268266e-04	ci right 4.292408e-04	k: 214	n:570000
Cons ci ratio: 8.148599e-03	ci left: 2.875869e-01	ci right 2.899416e-01	k: 164595	n:570000
KS ci ratio: 1.741877e-01	ci left: 8.103983e-04	ci right 9.666762e-04	k: 505	n:570000
GPATCH4   570000 perm   232 sec   (2462 perm/sec)   p_kst 8.859649e-04   p_cons 2.887632e-01   p_joint 3.754386e-04

Joint ci ratio: 2.666723e-01	ci left: 3.228003e-04	ci right 4.236795e-04	k: 215	n:580000
Cons ci ratio: 8.078510e-03	ci left: 2.875736e-01	ci right 2.899078e-01	k: 167469	n:580000
KS ci ratio: 1.731645e-01	ci left: 8.063209e-04	ci right 9.608036e-04	k: 511	n:580000
GPATCH4   580000 perm   239 sec   (2432 perm/sec)   p_kst 8.810345e-04   p_cons 2.887397e-01   p_joint 3.706897e-04

Joint ci ratio: 2.642368e-01	ci left: 3.236576e-04	ci right 4.237282e-04	k: 219	n:590000
Cons ci ratio: 8.007588e-03	ci left: 2.876946e-01	ci right 2.900092e-01	k: 170422	n:590000
KS ci ratio: 1.723257e-01	ci left: 8.007624e-04	ci right 9.533597e-04	k: 516	n:590000
GPATCH4   590000 perm   245 sec   (2404 perm/sec)   p_kst 8.745763e-04   p_cons 2.888508e-01   p_joint 3.711864e-04

Joint ci ratio: 2.636389e-01	ci left: 3.198197e-04	ci right 4.184429e-04	k: 220	n:600000
Cons ci ratio: 7.944269e-03	ci left: 2.875136e-01	ci right 2.898084e-01	k: 173196	n:600000
KS ci ratio: 1.713348e-01	ci left: 7.969862e-04	ci right 9.479002e-04	k: 522	n:600000
GPATCH4   600000 perm   252 sec   (2384 perm/sec)   p_kst 8.700000e-04   p_cons 2.886600e-01   p_joint 3.666667e-04

Joint ci ratio: 2.630451e-01	ci left: 3.161078e-04	ci right 4.133306e-04	k: 221	n:610000
Cons ci ratio: 7.878808e-03	ci left: 2.875270e-01	ci right 2.898029e-01	k: 176085	n:610000
KS ci ratio: 1.690859e-01	ci left: 8.058943e-04	ci right 9.562881e-04	k: 536	n:610000
GPATCH4   610000 perm   258 sec   (2363 perm/sec)   p_kst 8.786885e-04   p_cons 2.886639e-01   p_joint 3.622951e-04

Joint ci ratio: 2.607068e-01	ci left: 3.170374e-04	ci right 4.135381e-04	k: 225	n:620000
Cons ci ratio: 7.816412e-03	ci left: 2.874627e-01	ci right 2.897200e-01	k: 178926	n:620000
KS ci ratio: 1.676865e-01	ci left: 8.068004e-04	ci right 9.559913e-04	k: 545	n:620000
GPATCH4   620000 perm   266 sec   (2327 perm/sec)   p_kst 8.790323e-04   p_cons 2.885903e-01   p_joint 3.629032e-04

Joint ci ratio: 2.607075e-01	ci left: 3.120050e-04	ci right 4.069742e-04	k: 225	n:630000
Cons ci ratio: 7.755476e-03	ci left: 2.874004e-01	ci right 2.896396e-01	k: 181767	n:630000
KS ci ratio: 1.672285e-01	ci left: 7.985561e-04	ci right 9.457785e-04	k: 548	n:630000
GPATCH4   630000 perm   276 sec   (2282 perm/sec)   p_kst 8.698413e-04   p_cons 2.885190e-01   p_joint 3.571429e-04

Joint ci ratio: 2.578703e-01	ci left: 3.144347e-04	ci right 4.089343e-04	k: 230	n:640000
Cons ci ratio: 7.693512e-03	ci left: 2.874698e-01	ci right 2.896915e-01	k: 184691	n:640000
KS ci ratio: 1.655776e-01	ci left: 8.025505e-04	ci right 9.489032e-04	k: 559	n:640000
GPATCH4   640000 perm   283 sec   (2264 perm/sec)   p_kst 8.734375e-04   p_cons 2.885797e-01   p_joint 3.593750e-04

Joint ci ratio: 2.540491e-01	ci left: 3.196758e-04	ci right 4.141014e-04	k: 237	n:650000
Cons ci ratio: 7.632695e-03	ci left: 2.875540e-01	ci right 2.897587e-01	k: 187626	n:650000
KS ci ratio: 1.645526e-01	ci left: 8.005279e-04	ci right 9.455185e-04	k: 566	n:650000
GPATCH4   650000 perm   289 sec   (2246 perm/sec)   p_kst 8.707692e-04   p_cons 2.886554e-01   p_joint 3.646154e-04

Joint ci ratio: 2.529887e-01	ci left: 3.176700e-04	ci right 4.110497e-04	k: 239	n:660000
Cons ci ratio: 7.575505e-03	ci left: 2.875161e-01	ci right 2.897039e-01	k: 190482	n:660000
KS ci ratio: 1.634040e-01	ci left: 8.000224e-04	ci right 9.438107e-04	k: 574	n:660000
GPATCH4   660000 perm   296 sec   (2227 perm/sec)   p_kst 8.696970e-04   p_cons 2.886091e-01   p_joint 3.621212e-04

Joint ci ratio: 2.509064e-01	ci left: 3.185218e-04	ci right 4.112609e-04	k: 243	n:670000
Cons ci ratio: 7.519636e-03	ci left: 2.874764e-01	ci right 2.896478e-01	k: 193336	n:670000
KS ci ratio: 1.624185e-01	ci left: 7.981036e-04	ci right 9.405974e-04	k: 581	n:670000
GPATCH4   670000 perm   303 sec   (2209 perm/sec)   p_kst 8.671642e-04   p_cons 2.885612e-01   p_joint 3.626866e-04

Joint ci ratio: 2.493781e-01	ci left: 3.179729e-04	ci right 4.099007e-04	k: 246	n:680000
Cons ci ratio: 7.464210e-03	ci left: 2.874806e-01	ci right 2.896359e-01	k: 196219	n:680000
KS ci ratio: 1.615880e-01	ci left: 7.948324e-04	ci right 9.359462e-04	k: 587	n:680000
GPATCH4   680000 perm   311 sec   (2189 perm/sec)   p_kst 8.632353e-04   p_cons 2.885574e-01   p_joint 3.617647e-04

Joint ci ratio: 2.468915e-01	ci left: 3.201605e-04	ci right 4.116561e-04	k: 251	n:690000
Cons ci ratio: 7.410175e-03	ci left: 2.874746e-01	ci right 2.896142e-01	k: 199095	n:690000
KS ci ratio: 1.606349e-01	ci left: 7.930490e-04	ci right 9.329354e-04	k: 594	n:690000
GPATCH4   690000 perm   318 sec   (2171 perm/sec)   p_kst 8.608696e-04   p_cons 2.885435e-01   p_joint 3.637681e-04

Joint ci ratio: 2.454350e-01	ci left: 3.196081e-04	ci right 4.103249e-04	k: 254	n:700000
Cons ci ratio: 7.357271e-03	ci left: 2.874702e-01	ci right 2.895944e-01	k: 201972	n:700000
KS ci ratio: 1.599646e-01	ci left: 7.885759e-04	ci right 9.270371e-04	k: 599	n:700000
GPATCH4   700000 perm   325 sec   (2153 perm/sec)   p_kst 8.557143e-04   p_cons 2.885314e-01   p_joint 3.628571e-04

Joint ci ratio: 2.440040e-01	ci left: 3.190728e-04	ci right 4.090296e-04	k: 257	n:710000
Cons ci ratio: 7.304157e-03	ci left: 2.875406e-01	ci right 2.896499e-01	k: 204902	n:710000
KS ci ratio: 1.594346e-01	ci left: 7.828776e-04	ci right 9.198393e-04	k: 603	n:710000
GPATCH4   710000 perm   333 sec   (2134 perm/sec)   p_kst 8.492958e-04   p_cons 2.885944e-01   p_joint 3.619718e-04

Joint ci ratio: 2.270323e-01	ci left: 3.669241e-04	ci right 4.621707e-04	k: 297	n:720000
Cons ci ratio: 7.252347e-03	ci left: 2.875993e-01	ci right 2.896940e-01	k: 207825	n:720000
KS ci ratio: 1.583891e-01	ci left: 7.826736e-04	ci right 9.186163e-04	k: 611	n:720000
GPATCH4   720000 perm   340 sec   (2118 perm/sec)   p_kst 8.486111e-04   p_cons 2.886458e-01   p_joint 4.125000e-04

Joint ci ratio: 2.255238e-01	ci left: 3.670666e-04	ci right 4.616291e-04	k: 301	n:730000
Cons ci ratio: 7.199968e-03	ci left: 2.877509e-01	ci right 2.898316e-01	k: 210817	n:730000
KS ci ratio: 1.576187e-01	ci left: 7.798462e-04	ci right 9.145766e-04	k: 617	n:730000
GPATCH4   730000 perm   347 sec   (2102 perm/sec)   p_kst 8.452055e-04   p_cons 2.887904e-01   p_joint 4.123288e-04

Joint ci ratio: 2.255245e-01	ci left: 3.621061e-04	ci right 4.553911e-04	k: 301	n:740000
Cons ci ratio: 7.151552e-03	ci left: 2.877352e-01	ci right 2.898016e-01	k: 213688	n:740000
KS ci ratio: 1.569853e-01	ci left: 7.757984e-04	ci right 9.092401e-04	k: 622	n:740000
GPATCH4   740000 perm   355 sec   (2086 perm/sec)   p_kst 8.405405e-04   p_cons 2.887676e-01   p_joint 4.067568e-04

Joint ci ratio: 2.131717e-01	ci left: 4.026440e-04	ci right 4.999488e-04	k: 337	n:750000
Cons ci ratio: 7.104031e-03	ci left: 2.877239e-01	ci right 2.897764e-01	k: 216562	n:750000
KS ci ratio: 1.563594e-01	ci left: 7.718596e-04	ci right 9.040449e-04	k: 627	n:750000
GPATCH4   750000 perm   362 sec   (2069 perm/sec)   p_kst 8.360000e-04   p_cons 2.887493e-01   p_joint 4.493333e-04

Joint ci ratio: 2.122321e-01	ci left: 4.010831e-04	ci right 4.975279e-04	k: 340	n:760000
Cons ci ratio: 7.056404e-03	ci left: 2.877734e-01	ci right 2.898125e-01	k: 219482	n:760000
KS ci ratio: 1.553730e-01	ci left: 7.718193e-04	ci right 9.030861e-04	k: 635	n:760000
GPATCH4   760000 perm   371 sec   (2051 perm/sec)   p_kst 8.355263e-04   p_cons 2.887921e-01   p_joint 4.473684e-04

Joint ci ratio: 2.116128e-01	ci left: 3.983338e-04	ci right 4.938017e-04	k: 342	n:770000
Cons ci ratio: 7.010299e-03	ci left: 2.877879e-01	ci right 2.898137e-01	k: 222376	n:770000
KS ci ratio: 1.544049e-01	ci left: 7.717826e-04	ci right 9.021497e-04	k: 643	n:770000
GPATCH4   770000 perm   379 sec   (2034 perm/sec)   p_kst 8.350649e-04   p_cons 2.888000e-01   p_joint 4.441558e-04

Joint ci ratio: 2.109989e-01	ci left: 3.956553e-04	ci right 4.901705e-04	k: 344	n:780000
Cons ci ratio: 6.965760e-03	ci left: 2.877624e-01	ci right 2.897751e-01	k: 225239	n:780000
KS ci ratio: 1.535727e-01	ci left: 7.705164e-04	ci right 8.999036e-04	k: 650	n:780000
GPATCH4   780000 perm   386 sec   (2018 perm/sec)   p_kst 8.333333e-04   p_cons 2.887679e-01   p_joint 4.410256e-04

Joint ci ratio: 2.100876e-01	ci left: 3.942442e-04	ci right 4.879633e-04	k: 347	n:790000
Cons ci ratio: 6.922230e-03	ci left: 2.877274e-01	ci right 2.897273e-01	k: 228094	n:790000
KS ci ratio: 1.524064e-01	ci left: 7.729368e-04	ci right 9.016548e-04	k: 660	n:790000
GPATCH4   790000 perm   394 sec   (2003 perm/sec)   p_kst 8.354430e-04   p_cons 2.887266e-01   p_joint 4.392405e-04

Joint ci ratio: 2.088906e-01	ci left: 3.940538e-04	ci right 4.871257e-04	k: 351	n:800000
Cons ci ratio: 6.878292e-03	ci left: 2.877658e-01	ci right 2.897532e-01	k: 231007	n:800000
KS ci ratio: 1.517196e-01	ci left: 7.704896e-04	ci right 8.981694e-04	k: 666	n:800000
GPATCH4   800000 perm   402 sec   (1988 perm/sec)   p_kst 8.325000e-04   p_cons 2.887588e-01   p_joint 4.387500e-04

Joint ci ratio: 2.071325e-01	ci left: 3.962106e-04	ci right 4.889044e-04	k: 357	n:810000
Cons ci ratio: 6.837008e-03	ci left: 2.876935e-01	ci right 2.896685e-01	k: 233831	n:810000
KS ci ratio: 1.503726e-01	ci left: 7.752325e-04	ci right 9.024550e-04	k: 678	n:810000
GPATCH4   810000 perm   411 sec   (1969 perm/sec)   p_kst 8.370370e-04   p_cons 2.886802e-01   p_joint 4.407407e-04

Joint ci ratio: 1.923764e-01	ci left: 4.574204e-04	ci right 5.559200e-04	k: 414	n:820000
Cons ci ratio: 6.794723e-03	ci left: 2.877278e-01	ci right 2.896907e-01	k: 236741	n:820000
KS ci ratio: 1.491690e-01	ci left: 7.786904e-04	ci right 9.053663e-04	k: 689	n:820000
GPATCH4   820000 perm   420 sec   (1951 perm/sec)   p_kst 8.402439e-04   p_cons 2.887085e-01   p_joint 5.048780e-04

Joint ci ratio: 1.903233e-01	ci left: 4.622334e-04	ci right 5.605842e-04	k: 423	n:830000
Cons ci ratio: 6.753412e-03	ci left: 2.877493e-01	ci right 2.897004e-01	k: 239641	n:830000
KS ci ratio: 1.478882e-01	ci left: 7.832293e-04	ci right 9.094528e-04	k: 701	n:830000
GPATCH4   830000 perm   429 sec   (1933 perm/sec)   p_kst 8.445783e-04   p_cons 2.887241e-01   p_joint 5.096386e-04

Joint ci ratio: 2.021132e-01	ci left: 4.023911e-04	ci right 4.939683e-04	k: 375	n:840000
Cons ci ratio: 6.712903e-03	ci left: 2.877667e-01	ci right 2.897061e-01	k: 242538	n:840000
KS ci ratio: 1.474690e-01	ci left: 7.784909e-04	ci right 9.035639e-04	k: 705	n:840000
GPATCH4   840000 perm   438 sec   (1919 perm/sec)   p_kst 8.392857e-04   p_cons 2.887357e-01   p_joint 4.464286e-04

Joint ci ratio: 2.005195e-01	ci left: 4.043602e-04	ci right 4.955710e-04	k: 381	n:850000
Cons ci ratio: 6.673936e-03	ci left: 2.877332e-01	ci right 2.896611e-01	k: 245392	n:850000
KS ci ratio: 1.466406e-01	ci left: 7.783977e-04	ci right 9.026916e-04	k: 713	n:850000
GPATCH4   850000 perm   447 sec   (1903 perm/sec)   p_kst 8.388235e-04   p_cons 2.886965e-01   p_joint 4.482353e-04

Joint ci ratio: 1.999969e-01	ci left: 4.018672e-04	ci right 4.922507e-04	k: 383	n:860000
Cons ci ratio: 6.633649e-03	ci left: 2.878237e-01	ci right 2.897405e-01	k: 248352	n:860000
KS ci ratio: 1.459271e-01	ci left: 7.771881e-04	ci right 9.006325e-04	k: 720	n:860000
GPATCH4   860000 perm   455 sec   (1889 perm/sec)   p_kst 8.372093e-04   p_cons 2.887814e-01   p_joint 4.453488e-04

Joint ci ratio: 1.997374e-01	ci left: 3.983399e-04	ci right 4.877996e-04	k: 384	n:870000
Cons ci ratio: 6.594950e-03	ci left: 2.878581e-01	ci right 2.897640e-01	k: 251265	n:870000
KS ci ratio: 1.457257e-01	ci left: 7.704697e-04	ci right 8.926633e-04	k: 722	n:870000
GPATCH4   870000 perm   464 sec   (1875 perm/sec)   p_kst 8.298851e-04   p_cons 2.888103e-01   p_joint 4.413793e-04

Joint ci ratio: 1.987078e-01	ci left: 3.981320e-04	ci right 4.870283e-04	k: 388	n:880000
Cons ci ratio: 6.557936e-03	ci left: 2.878283e-01	ci right 2.897231e-01	k: 254122	n:880000
KS ci ratio: 1.446294e-01	ci left: 7.737604e-04	ci right 8.954730e-04	k: 733	n:880000
GPATCH4   880000 perm   473 sec   (1862 perm/sec)   p_kst 8.329545e-04   p_cons 2.887750e-01   p_joint 4.409091e-04

Joint ci ratio: 1.976941e-01	ci left: 3.979300e-04	ci right 4.862732e-04	k: 392	n:890000
Cons ci ratio: 6.521467e-03	ci left: 2.878036e-01	ci right 2.896877e-01	k: 256983	n:890000
KS ci ratio: 1.438476e-01	ci left: 7.737309e-04	ci right 8.947245e-04	k: 741	n:890000
GPATCH4   890000 perm   482 sec   (1847 perm/sec)   p_kst 8.325843e-04   p_cons 2.887449e-01   p_joint 4.404494e-04

Joint ci ratio: 1.971932e-01	ci left: 3.956209e-04	ci right 4.832022e-04	k: 394	n:900000
Cons ci ratio: 6.485284e-03	ci left: 2.877994e-01	ci right 2.896730e-01	k: 259862	n:900000
KS ci ratio: 1.434618e-01	ci left: 7.694184e-04	ci right 8.893873e-04	k: 745	n:900000
GPATCH4   900000 perm   491 sec   (1835 perm/sec)   p_kst 8.277778e-04   p_cons 2.887356e-01   p_joint 4.377778e-04

Joint ci ratio: 1.962023e-01	ci left: 3.954525e-04	ci right 4.825041e-04	k: 398	n:910000
Cons ci ratio: 6.449075e-03	ci left: 2.878349e-01	ci right 2.896983e-01	k: 262777	n:910000
KS ci ratio: 1.426987e-01	ci left: 7.694398e-04	ci right 8.887195e-04	k: 753	n:910000
GPATCH4   910000 perm   499 sec   (1822 perm/sec)   p_kst 8.274725e-04   p_cons 2.887659e-01   p_joint 4.373626e-04

Joint ci ratio: 1.881215e-01	ci left: 4.273689e-04	ci right 5.171293e-04	k: 433	n:920000
Cons ci ratio: 6.414417e-03	ci left: 2.878089e-01	ci right 2.896620e-01	k: 265636	n:920000
KS ci ratio: 1.417616e-01	ci left: 7.715591e-04	ci right 8.903156e-04	k: 763	n:920000
GPATCH4   920000 perm   508 sec   (1810 perm/sec)   p_kst 8.293478e-04   p_cons 2.887348e-01   p_joint 4.706522e-04

Joint ci ratio: 1.868344e-01	ci left: 4.289223e-04	ci right 5.183228e-04	k: 439	n:930000
Cons ci ratio: 6.380478e-03	ci left: 2.877727e-01	ci right 2.896157e-01	k: 268485	n:930000
KS ci ratio: 1.407518e-01	ci left: 7.746728e-04	ci right 8.929879e-04	k: 774	n:930000
GPATCH4   930000 perm   517 sec   (1798 perm/sec)   p_kst 8.322581e-04   p_cons 2.886935e-01   p_joint 4.720430e-04

Joint ci ratio: 1.853654e-01	ci left: 4.314593e-04	ci right 5.206020e-04	k: 446	n:940000
Cons ci ratio: 6.346382e-03	ci left: 2.877819e-01	ci right 2.896151e-01	k: 271376	n:940000
KS ci ratio: 1.401205e-01	ci left: 7.736168e-04	ci right 8.911964e-04	k: 781	n:940000
GPATCH4   940000 perm   526 sec   (1786 perm/sec)   p_kst 8.308511e-04   p_cons 2.886979e-01   p_joint 4.744681e-04

Joint ci ratio: 1.845417e-01	ci left: 4.309332e-04	ci right 5.195272e-04	k: 450	n:950000
Cons ci ratio: 6.311565e-03	ci left: 2.878730e-01	ci right 2.896967e-01	k: 274345	n:950000
KS ci ratio: 1.395862e-01	ci left: 7.715682e-04	ci right 8.883520e-04	k: 787	n:950000
GPATCH4   950000 perm   536 sec   (1774 perm/sec)   p_kst 8.284211e-04   p_cons 2.887842e-01   p_joint 4.736842e-04

Joint ci ratio: 1.837288e-01	ci left: 4.304189e-04	ci right 5.184740e-04	k: 454	n:960000
Cons ci ratio: 6.277856e-03	ci left: 2.879268e-01	ci right 2.897411e-01	k: 277280	n:960000
KS ci ratio: 1.387958e-01	ci left: 7.725796e-04	ci right 8.887996e-04	k: 796	n:960000
GPATCH4   960000 perm   546 sec   (1759 perm/sec)   p_kst 8.291667e-04   p_cons 2.888333e-01   p_joint 4.729167e-04

Joint ci ratio: 1.774053e-01	ci left: 4.584656e-04	ci right 5.486844e-04	k: 487	n:970000
Cons ci ratio: 6.245982e-03	ci left: 2.878941e-01	ci right 2.896989e-01	k: 280132	n:970000
KS ci ratio: 1.379331e-01	ci left: 7.745673e-04	ci right 8.903026e-04	k: 806	n:970000
GPATCH4   970000 perm   555 sec   (1748 perm/sec)   p_kst 8.309278e-04   p_cons 2.887959e-01   p_joint 5.020619e-04

Joint ci ratio: 1.805806e-01	ci left: 4.372171e-04	ci right 5.249629e-04	k: 470	n:980000
Cons ci ratio: 6.214835e-03	ci left: 2.878457e-01	ci right 2.896412e-01	k: 282968	n:980000
KS ci ratio: 1.366683e-01	ci left: 7.814441e-04	ci right 8.970492e-04	k: 821	n:980000
GPATCH4   980000 perm   564 sec   (1738 perm/sec)   p_kst 8.377551e-04   p_cons 2.887429e-01   p_joint 4.795918e-04

Joint ci ratio: 1.794411e-01	ci left: 4.385884e-04	ci right 5.259936e-04	k: 476	n:990000
Cons ci ratio: 6.184652e-03	ci left: 2.877651e-01	ci right 2.895513e-01	k: 285771	n:990000
KS ci ratio: 1.358444e-01	ci left: 7.833075e-04	ci right 8.984332e-04	k: 831	n:990000
GPATCH4   990000 perm   573 sec   (1726 perm/sec)   p_kst 8.393939e-04   p_cons 2.886576e-01   p_joint 4.808081e-04

Joint ci ratio: 1.733662e-01	ci left: 4.667023e-04	ci right 5.562321e-04	k: 510	n:1000000
Cons ci ratio: 6.153584e-03	ci left: 2.877740e-01	ci right 2.895513e-01	k: 288662	n:1000000
KS ci ratio: 1.354382e-01	ci left: 7.803046e-04	ci right 8.946185e-04	k: 836	n:1000000
GPATCH4   1000000 perm   583 sec   (1716 perm/sec)   p_kst 8.360000e-04   p_cons 2.886620e-01   p_joint 5.100000e-04

Joint ci ratio: 1.723572e-01	ci left: 4.677651e-04	ci right 5.569222e-04	k: 516	n:1010000
Cons ci ratio: 6.123601e-03	ci left: 2.877412e-01	ci right 2.895096e-01	k: 291511	n:1010000
KS ci ratio: 1.347159e-01	ci left: 7.811886e-04	ci right 8.949727e-04	k: 845	n:1010000
GPATCH4   1010000 perm   592 sec   (1705 perm/sec)   p_kst 8.366337e-04   p_cons 2.886248e-01   p_joint 5.108911e-04

Joint ci ratio: 1.713656e-01	ci left: 4.688085e-04	ci right 5.575973e-04	k: 522	n:1020000
Cons ci ratio: 6.093179e-03	ci left: 2.877678e-01	ci right 2.895275e-01	k: 294420	n:1020000
KS ci ratio: 1.342408e-01	ci left: 7.792143e-04	ci right 8.922787e-04	k: 851	n:1020000
GPATCH4   1020000 perm   602 sec   (1694 perm/sec)   p_kst 8.343137e-04   p_cons 2.886471e-01   p_joint 5.117647e-04

Joint ci ratio: 1.702300e-01	ci left: 4.707626e-04	ci right 5.592701e-04	k: 529	n:1030000
Cons ci ratio: 6.062273e-03	ci left: 2.878570e-01	ci right 2.896083e-01	k: 297394	n:1030000
KS ci ratio: 1.336150e-01	ci left: 7.791559e-04	ci right 8.916429e-04	k: 859	n:1030000
GPATCH4   1030000 perm   612 sec   (1682 perm/sec)   p_kst 8.339806e-04   p_cons 2.887320e-01   p_joint 5.135922e-04

Joint ci ratio: 1.694327e-01	ci left: 4.708394e-04	ci right 5.589043e-04	k: 534	n:1040000
Cons ci ratio: 6.033302e-03	ci left: 2.878446e-01	ci right 2.895874e-01	k: 300264	n:1040000
KS ci ratio: 1.330746e-01	ci left: 7.781702e-04	ci right 8.900246e-04	k: 866	n:1040000
GPATCH4   1040000 perm   622 sec   (1671 perm/sec)   p_kst 8.326923e-04   p_cons 2.887154e-01   p_joint 5.134615e-04

Joint ci ratio: 1.683349e-01	ci left: 4.727401e-04	ci right 5.605295e-04	k: 541	n:1050000
Cons ci ratio: 6.004951e-03	ci left: 2.878181e-01	ci right 2.895526e-01	k: 303119	n:1050000
KS ci ratio: 1.323892e-01	ci left: 7.790459e-04	ci right 8.904040e-04	k: 875	n:1050000
GPATCH4   1050000 perm   632 sec   (1661 perm/sec)   p_kst 8.333333e-04   p_cons 2.886848e-01   p_joint 5.152381e-04

Joint ci ratio: 1.671059e-01	ci left: 4.755108e-04	ci right 5.631051e-04	k: 549	n:1060000
Cons ci ratio: 5.975802e-03	ci left: 2.878742e-01	ci right 2.896005e-01	k: 306061	n:1060000
KS ci ratio: 1.314914e-01	ci left: 7.826436e-04	ci right 8.936981e-04	k: 887	n:1060000
GPATCH4   1060000 perm   644 sec   (1647 perm/sec)   p_kst 8.367925e-04   p_cons 2.887368e-01   p_joint 5.179245e-04

Joint ci ratio: 1.662018e-01	ci left: 4.764403e-04	ci right 5.636836e-04	k: 555	n:1070000
Cons ci ratio: 5.947520e-03	ci left: 2.878984e-01	ci right 2.896167e-01	k: 308970	n:1070000
KS ci ratio: 1.305391e-01	ci left: 7.870806e-04	ci right 8.978931e-04	k: 900	n:1070000
GPATCH4   1070000 perm   654 sec   (1635 perm/sec)   p_kst 8.411215e-04   p_cons 2.887570e-01   p_joint 5.186916e-04

Joint ci ratio: 1.653121e-01	ci left: 4.773540e-04	ci right 5.642501e-04	k: 561	n:1080000
Cons ci ratio: 5.919461e-03	ci left: 2.879343e-01	ci right 2.896446e-01	k: 311892	n:1080000
KS ci ratio: 1.298919e-01	ci left: 7.878547e-04	ci right 8.981839e-04	k: 909	n:1080000
GPATCH4   1080000 perm   664 sec   (1626 perm/sec)   p_kst 8.416667e-04   p_cons 2.887889e-01   p_joint 5.194444e-04

Joint ci ratio: 1.642920e-01	ci left: 4.791318e-04	ci right 5.657601e-04	k: 568	n:1090000
Cons ci ratio: 5.891507e-03	ci left: 2.879896e-01	ci right 2.896922e-01	k: 314836	n:1090000
KS ci ratio: 1.288340e-01	ci left: 7.939430e-04	ci right 9.041501e-04	k: 924	n:1090000
GPATCH4   1090000 perm   674 sec   (1617 perm/sec)   p_kst 8.477064e-04   p_cons 2.888404e-01   p_joint 5.211009e-04

Joint ci ratio: 1.640042e-01	ci left: 4.765195e-04	ci right 5.625097e-04	k: 570	n:1100000
Cons ci ratio: 5.864646e-03	ci left: 2.879950e-01	ci right 2.896898e-01	k: 317726	n:1100000
KS ci ratio: 1.286260e-01	ci left: 7.893647e-04	ci right 8.987457e-04	k: 927	n:1100000
GPATCH4   1100000 perm   684 sec   (1607 perm/sec)   p_kst 8.427273e-04   p_cons 2.888418e-01   p_joint 5.181818e-04

Joint ci ratio: 1.634329e-01	ci left: 4.756824e-04	ci right 5.611932e-04	k: 574	n:1110000
Cons ci ratio: 5.838226e-03	ci left: 2.879948e-01	ci right 2.896820e-01	k: 320610	n:1110000
KS ci ratio: 1.281436e-01	ci left: 7.883570e-04	ci right 8.971577e-04	k: 934	n:1110000
GPATCH4   1110000 perm   695 sec   (1598 perm/sec)   p_kst 8.414414e-04   p_cons 2.888378e-01   p_joint 5.171171e-04

Joint ci ratio: 1.628675e-01	ci left: 4.748609e-04	ci right 5.598997e-04	k: 578	n:1120000
Cons ci ratio: 5.812980e-03	ci left: 2.879367e-01	ci right 2.896162e-01	k: 323429	n:1120000
KS ci ratio: 1.275990e-01	ci left: 7.882325e-04	ci right 8.965186e-04	k: 942	n:1120000
GPATCH4   1120000 perm   705 sec   (1588 perm/sec)   p_kst 8.410714e-04   p_cons 2.887759e-01   p_joint 5.160714e-04

Joint ci ratio: 1.617536e-01	ci left: 4.774507e-04	ci right 5.623117e-04	k: 586	n:1130000
Cons ci ratio: 5.786962e-03	ci left: 2.879574e-01	ci right 2.896295e-01	k: 326336	n:1130000
KS ci ratio: 1.267946e-01	ci left: 7.915386e-04	ci right 8.995419e-04	k: 954	n:1130000
GPATCH4   1130000 perm   716 sec   (1578 perm/sec)   p_kst 8.442478e-04   p_cons 2.887929e-01   p_joint 5.185841e-04

Joint ci ratio: 1.609332e-01	ci left: 4.783132e-04	ci right 5.628546e-04	k: 592	n:1140000
Cons ci ratio: 5.761069e-03	ci left: 2.879936e-01	ci right 2.896584e-01	k: 329261	n:1140000
KS ci ratio: 1.262668e-01	ci left: 7.913907e-04	ci right 8.988907e-04	k: 962	n:1140000
GPATCH4   1140000 perm   727 sec   (1568 perm/sec)   p_kst 8.438596e-04   p_cons 2.888254e-01   p_joint 5.192982e-04

Joint ci ratio: 1.605278e-01	ci left: 4.766577e-04	ci right 5.606738e-04	k: 595	n:1150000
Cons ci ratio: 5.734840e-03	ci left: 2.880778e-01	ci right 2.897355e-01	k: 332242	n:1150000
KS ci ratio: 1.260709e-01	ci left: 7.870353e-04	ci right 8.937654e-04	k: 965	n:1150000
GPATCH4   1150000 perm   738 sec   (1559 perm/sec)   p_kst 8.391304e-04   p_cons 2.889061e-01   p_joint 5.173913e-04

Joint ci ratio: 1.599919e-01	ci left: 4.758586e-04	ci right 5.594269e-04	k: 599	n:1160000
Cons ci ratio: 5.709853e-03	ci left: 2.880968e-01	ci right 2.897473e-01	k: 335149	n:1160000
KS ci ratio: 1.256167e-01	ci left: 7.860950e-04	ci right 8.922849e-04	k: 972	n:1160000
GPATCH4   1160000 perm   749 sec   (1550 perm/sec)   p_kst 8.379310e-04   p_cons 2.889216e-01   p_joint 5.163793e-04

Joint ci ratio: 1.597261e-01	ci left: 4.734324e-04	ci right 5.564232e-04	k: 601	n:1170000
Cons ci ratio: 5.685970e-03	ci left: 2.880592e-01	ci right 2.897026e-01	k: 337990	n:1170000
KS ci ratio: 1.251034e-01	ci left: 7.859994e-04	ci right 8.917105e-04	k: 980	n:1170000
GPATCH4   1170000 perm   760 sec   (1540 perm/sec)   p_kst 8.376068e-04   p_cons 2.888803e-01   p_joint 5.136752e-04

Joint ci ratio: 1.593297e-01	ci left: 4.718611e-04	ci right 5.543516e-04	k: 604	n:1180000
Cons ci ratio: 5.661975e-03	ci left: 2.880518e-01	ci right 2.896882e-01	k: 340866	n:1180000
KS ci ratio: 1.249129e-01	ci left: 7.818012e-04	ci right 8.867755e-04	k: 983	n:1180000
GPATCH4   1180000 perm   771 sec   (1531 perm/sec)   p_kst 8.330508e-04   p_cons 2.888695e-01   p_joint 5.118644e-04

Joint ci ratio: 1.585454e-01	ci left: 4.727373e-04	ci right 5.549356e-04	k: 610	n:1190000
Cons ci ratio: 5.638097e-03	ci left: 2.880580e-01	ci right 2.896875e-01	k: 343758	n:1190000
KS ci ratio: 1.242829e-01	ci left: 7.833729e-04	ci right 8.879887e-04	k: 993	n:1190000
GPATCH4   1190000 perm   781 sec   (1523 perm/sec)   p_kst 8.344538e-04   p_cons 2.888723e-01   p_joint 5.126050e-04

Joint ci ratio: 1.581578e-01	ci left: 4.711988e-04	ci right 5.529101e-04	k: 613	n:1200000
Cons ci ratio: 5.614519e-03	ci left: 2.880642e-01	ci right 2.896869e-01	k: 346650	n:1200000
KS ci ratio: 1.237240e-01	ci left: 7.841122e-04	ci right 8.883214e-04	k: 1002	n:1200000
GPATCH4   1200000 perm   793 sec   (1514 perm/sec)   p_kst 8.350000e-04   p_cons 2.888750e-01   p_joint 5.108333e-04

Joint ci ratio: 1.576452e-01	ci left: 4.704797e-04	ci right 5.517769e-04	k: 617	n:1210000
Cons ci ratio: 5.591042e-03	ci left: 2.880842e-01	ci right 2.897002e-01	k: 349559	n:1210000
KS ci ratio: 1.232335e-01	ci left: 7.840393e-04	ci right 8.877955e-04	k: 1010	n:1210000
GPATCH4   1210000 perm   804 sec   (1505 perm/sec)   p_kst 8.347107e-04   p_cons 2.888917e-01   p_joint 5.099174e-04

Joint ci ratio: 1.575181e-01	ci left: 4.674106e-04	ci right 5.481062e-04	k: 618	n:1220000
Cons ci ratio: 5.568458e-03	ci left: 2.880598e-01	ci right 2.896691e-01	k: 352414	n:1220000
KS ci ratio: 1.227488e-01	ci left: 7.839684e-04	ci right 8.872776e-04	k: 1018	n:1220000
GPATCH4   1220000 perm   815 sec   (1496 perm/sec)   p_kst 8.344262e-04   p_cons 2.888639e-01   p_joint 5.065574e-04

Joint ci ratio: 1.568857e-01	ci left: 4.675157e-04	ci right 5.478749e-04	k: 623	n:1230000
Cons ci ratio: 5.545113e-03	ci left: 2.881121e-01	ci right 2.897149e-01	k: 355363	n:1230000
KS ci ratio: 1.223892e-01	ci left: 7.823231e-04	ci right 8.850915e-04	k: 1024	n:1230000
GPATCH4   1230000 perm   826 sec   (1489 perm/sec)   p_kst 8.325203e-04   p_cons 2.889130e-01   p_joint 5.065041e-04

Joint ci ratio: 1.561368e-01	ci left: 4.683946e-04	ci right 5.484846e-04	k: 629	n:1240000
Cons ci ratio: 5.521973e-03	ci left: 2.881700e-01	ci right 2.897665e-01	k: 358320	n:1240000
KS ci ratio: 1.216788e-01	ci left: 7.853961e-04	ci right 8.879263e-04	k: 1036	n:1240000
GPATCH4   1240000 perm   838 sec   (1480 perm/sec)   p_kst 8.354839e-04   p_cons 2.889677e-01   p_joint 5.072581e-04

Joint ci ratio: 1.595962e-01	ci left: 4.439002e-04	ci right 5.216448e-04	k: 602	n:1250000
Cons ci ratio: 5.500619e-03	ci left: 2.881151e-01	ci right 2.897051e-01	k: 361137	n:1250000
KS ci ratio: 1.208654e-01	ci left: 7.899733e-04	ci right 8.923623e-04	k: 1050	n:1250000
GPATCH4   1250000 perm   849 sec   (1472 perm/sec)   p_kst 8.400000e-04   p_cons 2.889096e-01   p_joint 4.816000e-04

Joint ci ratio: 1.592008e-01	ci left: 4.426631e-04	ci right 5.199806e-04	k: 605	n:1260000
Cons ci ratio: 5.479215e-03	ci left: 2.880833e-01	ci right 2.896669e-01	k: 363982	n:1260000
KS ci ratio: 1.205791e-01	ci left: 7.875520e-04	ci right 8.893682e-04	k: 1055	n:1260000
GPATCH4   1260000 perm   861 sec   (1463 perm/sec)   p_kst 8.373016e-04   p_cons 2.888746e-01   p_joint 4.801587e-04

Joint ci ratio: 1.580313e-01	ci left: 4.459830e-04	ci right 5.232539e-04	k: 614	n:1270000
Cons ci ratio: 5.456855e-03	ci left: 2.881425e-01	ci right 2.897199e-01	k: 366942	n:1270000
KS ci ratio: 1.197874e-01	ci left: 7.920432e-04	ci right 8.937200e-04	k: 1069	n:1270000
GPATCH4   1270000 perm   873 sec   (1455 perm/sec)   p_kst 8.417323e-04   p_cons 2.889307e-01   p_joint 4.834646e-04

Joint ci ratio: 1.575199e-01	ci left: 4.455003e-04	ci right 5.224142e-04	k: 618	n:1280000
Cons ci ratio: 5.435884e-03	ci left: 2.881164e-01	ci right 2.896876e-01	k: 369794	n:1280000
KS ci ratio: 1.193421e-01	ci left: 7.919184e-04	ci right 8.931747e-04	k: 1077	n:1280000
GPATCH4   1280000 perm   884 sec   (1447 perm/sec)   p_kst 8.414063e-04   p_cons 2.889016e-01   p_joint 4.828125e-04

Joint ci ratio: 1.571397e-01	ci left: 4.442809e-04	ci right 5.207816e-04	k: 621	n:1290000
Cons ci ratio: 5.414835e-03	ci left: 2.881148e-01	ci right 2.896799e-01	k: 372677	n:1290000
KS ci ratio: 1.190114e-01	ci left: 7.902920e-04	ci right 8.910406e-04	k: 1083	n:1290000
GPATCH4   1290000 perm   896 sec   (1440 perm/sec)   p_kst 8.395349e-04   p_cons 2.888969e-01   p_joint 4.813953e-04

Joint ci ratio: 1.517440e-01	ci left: 4.741419e-04	ci right 5.527266e-04	k: 666	n:1300000
Cons ci ratio: 5.393968e-03	ci left: 2.881179e-01	ci right 2.896769e-01	k: 375566	n:1300000
KS ci ratio: 1.185204e-01	ci left: 7.909302e-04	ci right 8.913151e-04	k: 1092	n:1300000
GPATCH4   1300000 perm   908 sec   (1431 perm/sec)   p_kst 8.400000e-04   p_cons 2.888969e-01   p_joint 5.123077e-04

Joint ci ratio: 1.560151e-01	ci left: 4.440990e-04	ci right 5.199699e-04	k: 630	n:1310000
Cons ci ratio: 5.373271e-03	ci left: 2.881262e-01	ci right 2.896793e-01	k: 378462	n:1310000
KS ci ratio: 1.180891e-01	ci left: 7.908187e-04	ci right 8.907987e-04	k: 1100	n:1310000
GPATCH4   1310000 perm   921 sec   (1423 perm/sec)   p_kst 8.396947e-04   p_cons 2.889023e-01   p_joint 4.809160e-04

Joint ci ratio: 1.526633e-01	ci left: 4.611279e-04	ci right 5.380610e-04	k: 658	n:1320000
Cons ci ratio: 5.543099e-03	ci left: 2.740075e-01	ci right 2.755313e-01	k: 362695	n:1320000
KS ci ratio: 1.177155e-01	ci left: 7.899743e-04	ci right 8.895096e-04	k: 1107	n:1320000
GPATCH4   1320000 perm   933 sec   (1415 perm/sec)   p_kst 8.386364e-04   p_cons 2.747689e-01   p_joint 4.984848e-04

Joint ci ratio: 1.526636e-01	ci left: 4.576607e-04	ci right 5.340155e-04	k: 658	n:1330000
Cons ci ratio: 5.522405e-03	ci left: 2.739971e-01	ci right 2.755151e-01	k: 365425	n:1330000
KS ci ratio: 1.174509e-01	ci left: 7.876834e-04	ci right 8.866915e-04	k: 1112	n:1330000
GPATCH4   1330000 perm   945 sec   (1407 perm/sec)   p_kst 8.360902e-04   p_cons 2.747556e-01   p_joint 4.947368e-04

Joint ci ratio: 1.477017e-01	ci left: 4.865664e-04	ci right 5.648724e-04	k: 703	n:1340000
Cons ci ratio: 5.500963e-03	ci left: 2.740577e-01	ci right 2.755701e-01	k: 368250	n:1340000
KS ci ratio: 1.170834e-01	ci left: 7.868758e-04	ci right 8.854515e-04	k: 1119	n:1340000
GPATCH4   1340000 perm   957 sec   (1400 perm/sec)   p_kst 8.350746e-04   p_cons 2.748134e-01   p_joint 5.246269e-04

Joint ci ratio: 1.471800e-01	ci left: 4.865292e-04	ci right 5.645284e-04	k: 708	n:1350000
Cons ci ratio: 5.481113e-03	ci left: 2.740197e-01	ci right 2.755265e-01	k: 370943	n:1350000
KS ci ratio: 1.167193e-01	ci left: 7.860807e-04	ci right 8.842293e-04	k: 1126	n:1350000
GPATCH4   1350000 perm   970 sec   (1392 perm/sec)   p_kst 8.340741e-04   p_cons 2.747726e-01   p_joint 5.244444e-04

Joint ci ratio: 1.464587e-01	ci left: 4.879098e-04	ci right 5.657135e-04	k: 715	n:1360000
Cons ci ratio: 5.461264e-03	ci left: 2.739977e-01	ci right 2.754989e-01	k: 373657	n:1360000
KS ci ratio: 1.162560e-01	ci left: 7.867255e-04	ci right 8.845380e-04	k: 1135	n:1360000
GPATCH4   1360000 perm   982 sec   (1385 perm/sec)   p_kst 8.345588e-04   p_cons 2.747478e-01   p_joint 5.257353e-04

Joint ci ratio: 1.461529e-01	ci left: 4.864580e-04	ci right 5.638541e-04	k: 718	n:1370000
Cons ci ratio: 5.440992e-03	ci left: 2.740227e-01	ci right 2.755184e-01	k: 376435	n:1370000
KS ci ratio: 1.160011e-01	ci left: 7.845266e-04	ci right 8.818372e-04	k: 1140	n:1370000
GPATCH4   1370000 perm   994 sec   (1378 perm/sec)   p_kst 8.321168e-04   p_cons 2.747701e-01   p_joint 5.240876e-04

Joint ci ratio: 1.452465e-01	ci left: 4.892170e-04	ci right 5.665274e-04	k: 727	n:1380000
Cons ci ratio: 5.421811e-03	ci left: 2.739836e-01	ci right 2.754738e-01	k: 379125	n:1380000
KS ci ratio: 1.154960e-01	ci left: 7.858782e-04	ci right 8.829031e-04	k: 1150	n:1380000
GPATCH4   1380000 perm   1006 sec   (1371 perm/sec)   p_kst 8.333333e-04   p_cons 2.747283e-01   p_joint 5.268116e-04

Joint ci ratio: 1.450476e-01	ci left: 4.870840e-04	ci right 5.639428e-04	k: 729	n:1390000
Cons ci ratio: 5.402286e-03	ci left: 2.739854e-01	ci right 2.754702e-01	k: 381871	n:1390000
KS ci ratio: 1.151465e-01	ci left: 7.851151e-04	ci right 8.817325e-04	k: 1157	n:1390000
GPATCH4   1390000 perm   1019 sec   (1364 perm/sec)   p_kst 8.323741e-04   p_cons 2.747273e-01   p_joint 5.244604e-04

Joint ci ratio: 1.441614e-01	ci left: 4.898009e-04	ci right 5.665756e-04	k: 738	n:1400000
Cons ci ratio: 5.383114e-03	ci left: 2.739764e-01	ci right 2.754559e-01	k: 384602	n:1400000
KS ci ratio: 1.146524e-01	ci left: 7.864447e-04	ci right 8.827824e-04	k: 1167	n:1400000
GPATCH4   1400000 perm   1031 sec   (1357 perm/sec)   p_kst 8.335714e-04   p_cons 2.747157e-01   p_joint 5.271429e-04

Joint ci ratio: 1.436762e-01	ci left: 4.897455e-04	ci right 5.662310e-04	k: 743	n:1410000
Cons ci ratio: 5.364146e-03	ci left: 2.739676e-01	ci right 2.754418e-01	k: 387333	n:1410000
KS ci ratio: 1.141647e-01	ci left: 7.877564e-04	ci right 8.838166e-04	k: 1177	n:1410000
GPATCH4   1410000 perm   1044 sec   (1350 perm/sec)   p_kst 8.347518e-04   p_cons 2.747043e-01   p_joint 5.269504e-04

Joint ci ratio: 1.432916e-01	ci left: 4.890124e-04	ci right 5.651615e-04	k: 747	n:1420000
Cons ci ratio: 5.344479e-03	ci left: 2.740258e-01	ci right 2.754949e-01	k: 390159	n:1420000
KS ci ratio: 1.139715e-01	ci left: 7.849453e-04	ci right 8.804898e-04	k: 1181	n:1420000
GPATCH4   1420000 perm   1057 sec   (1344 perm/sec)   p_kst 8.316901e-04   p_cons 2.747599e-01   p_joint 5.260563e-04

Joint ci ratio: 1.426257e-01	ci left: 4.903128e-04	ci right 5.662793e-04	k: 754	n:1430000
Cons ci ratio: 5.324373e-03	ci left: 2.741320e-01	ci right 2.755962e-01	k: 393055	n:1430000
KS ci ratio: 1.134448e-01	ci left: 7.869297e-04	ci right 8.822435e-04	k: 1192	n:1430000
GPATCH4   1430000 perm   1070 sec   (1336 perm/sec)   p_kst 8.335664e-04   p_cons 2.748636e-01   p_joint 5.272727e-04

Joint ci ratio: 1.420623e-01	ci left: 4.909261e-04	ci right 5.666618e-04	k: 760	n:1440000
Cons ci ratio: 5.305674e-03	ci left: 2.741480e-01	ci right 2.756071e-01	k: 395823	n:1440000
KS ci ratio: 1.129722e-01	ci left: 7.882128e-04	ci right 8.832578e-04	k: 1202	n:1440000
GPATCH4   1440000 perm   1084 sec   (1328 perm/sec)   p_kst 8.347222e-04   p_cons 2.748771e-01   p_joint 5.277778e-04

Joint ci ratio: 1.417832e-01	ci left: 4.895359e-04	ci right 5.648962e-04	k: 763	n:1450000
Cons ci ratio: 5.287180e-03	ci left: 2.741631e-01	ci right 2.756171e-01	k: 398590	n:1450000
KS ci ratio: 1.126450e-01	ci left: 7.874682e-04	ci right 8.821301e-04	k: 1209	n:1450000
GPATCH4   1450000 perm   1098 sec   (1321 perm/sec)   p_kst 8.337931e-04   p_cons 2.748897e-01   p_joint 5.262069e-04

Joint ci ratio: 1.456495e-01	ci left: 4.597701e-04	ci right 5.326461e-04	k: 723	n:1460000
Cons ci ratio: 5.268960e-03	ci left: 2.741718e-01	ci right 2.756209e-01	k: 401348	n:1460000
KS ci ratio: 1.123668e-01	ci left: 7.860685e-04	ci right 8.803134e-04	k: 1215	n:1460000
GPATCH4   1460000 perm   1111 sec   (1314 perm/sec)   p_kst 8.321918e-04   p_cons 2.748959e-01   p_joint 4.952055e-04

Joint ci ratio: 1.450496e-01	ci left: 4.605756e-04	ci right 5.332526e-04	k: 729	n:1470000
Cons ci ratio: 5.250963e-03	ci left: 2.741777e-01	ci right 2.756218e-01	k: 404102	n:1470000
KS ci ratio: 1.117253e-01	ci left: 7.899780e-04	ci right 8.841153e-04	k: 1229	n:1470000
GPATCH4   1470000 perm   1124 sec   (1308 perm/sec)   p_kst 8.360544e-04   p_cons 2.748993e-01   p_joint 4.959184e-04

Joint ci ratio: 1.443591e-01	ci left: 4.620221e-04	ci right 5.345504e-04	k: 736	n:1480000
Cons ci ratio: 5.233299e-03	ci left: 2.741720e-01	ci right 2.756113e-01	k: 406839	n:1480000
KS ci ratio: 1.112738e-01	ci left: 7.912087e-04	ci right 8.850867e-04	k: 1239	n:1480000
GPATCH4   1480000 perm   1137 sec   (1301 perm/sec)   p_kst 8.371622e-04   p_cons 2.748912e-01   p_joint 4.972973e-04

Joint ci ratio: 1.438718e-01	ci left: 4.621560e-04	ci right 5.344394e-04	k: 741	n:1490000
Cons ci ratio: 5.215980e-03	ci left: 2.741537e-01	ci right 2.755881e-01	k: 409557	n:1490000
KS ci ratio: 1.106949e-01	ci left: 7.943813e-04	ci right 8.881133e-04	k: 1252	n:1490000
GPATCH4   1490000 perm   1150 sec   (1295 perm/sec)   p_kst 8.402685e-04   p_cons 2.748705e-01   p_joint 4.973154e-04

Joint ci ratio: 1.433895e-01	ci left: 4.622885e-04	ci right 5.343295e-04	k: 746	n:1500000
Cons ci ratio: 5.198744e-03	ci left: 2.741423e-01	ci right 2.755719e-01	k: 412285	n:1500000
KS ci ratio: 1.102121e-01	ci left: 7.962162e-04	ci right 8.897284e-04	k: 1263	n:1500000
GPATCH4   1500000 perm   1163 sec   (1289 perm/sec)   p_kst 8.420000e-04   p_cons 2.748567e-01   p_joint 4.973333e-04

Joint ci ratio: 1.427223e-01	ci left: 4.636969e-04	ci right 5.355925e-04	k: 753	n:1510000
Cons ci ratio: 5.181300e-03	ci left: 2.741602e-01	ci right 2.755850e-01	k: 415057	n:1510000
KS ci ratio: 1.097787e-01	ci left: 7.973836e-04	ci right 8.906407e-04	k: 1273	n:1510000
GPATCH4   1510000 perm   1178 sec   (1282 perm/sec)   p_kst 8.430464e-04   p_cons 2.748722e-01   p_joint 4.986755e-04

Joint ci ratio: 1.420643e-01	ci left: 4.650875e-04	ci right 5.368380e-04	k: 760	n:1520000
Cons ci ratio: 5.163893e-03	ci left: 2.741884e-01	ci right 2.756085e-01	k: 417845	n:1520000
KS ci ratio: 1.092651e-01	ci left: 7.998162e-04	ci right 8.928921e-04	k: 1285	n:1520000
GPATCH4   1520000 perm   1192 sec   (1275 perm/sec)   p_kst 8.453947e-04   p_cons 2.748980e-01   p_joint 5.000000e-04

Joint ci ratio: 1.417852e-01	ci left: 4.639388e-04	ci right 5.353597e-04	k: 763	n:1530000
Cons ci ratio: 5.146804e-03	ci left: 2.742051e-01	ci right 2.756206e-01	k: 420616	n:1530000
KS ci ratio: 1.088007e-01	ci left: 8.015821e-04	ci right 8.944417e-04	k: 1296	n:1530000
GPATCH4   1530000 perm   1207 sec   (1267 perm/sec)   p_kst 8.470588e-04   p_cons 2.749124e-01   p_joint 4.986928e-04

Joint ci ratio: 1.407751e-01	ci left: 4.678167e-04	ci right 5.392784e-04	k: 774	n:1540000
Cons ci ratio: 5.130126e-03	ci left: 2.742027e-01	ci right 2.756137e-01	k: 423358	n:1540000
KS ci ratio: 1.082180e-01	ci left: 8.052213e-04	ci right 8.979711e-04	k: 1310	n:1540000
GPATCH4   1540000 perm   1222 sec   (1260 perm/sec)   p_kst 8.506494e-04   p_cons 2.749078e-01   p_joint 5.025974e-04

Joint ci ratio: 1.403231e-01	ci left: 4.679109e-04	ci right 5.391384e-04	k: 779	n:1550000
Cons ci ratio: 5.113270e-03	ci left: 2.742269e-01	ci right 2.756333e-01	k: 426141	n:1550000
KS ci ratio: 1.076853e-01	ci left: 8.081871e-04	ci right 9.007911e-04	k: 1323	n:1550000
GPATCH4   1550000 perm   1236 sec   (1254 perm/sec)   p_kst 8.535484e-04   p_cons 2.749297e-01   p_joint 5.025806e-04

Joint ci ratio: 1.400542e-01	ci left: 4.667671e-04	ci right 5.376728e-04	k: 782	n:1560000
Cons ci ratio: 5.096776e-03	ci left: 2.742354e-01	ci right 2.756373e-01	k: 428900	n:1560000
KS ci ratio: 1.074422e-01	ci left: 8.067490e-04	ci right 8.989664e-04	k: 1329	n:1560000
GPATCH4   1560000 perm   1250 sec   (1248 perm/sec)   p_kst 8.519231e-04   p_cons 2.749359e-01   p_joint 5.012821e-04

Joint ci ratio: 1.391681e-01	ci left: 4.699410e-04	ci right 5.408399e-04	k: 792	n:1570000
Cons ci ratio: 5.080513e-03	ci left: 2.742380e-01	ci right 2.756354e-01	k: 431650	n:1570000
KS ci ratio: 1.068810e-01	ci left: 8.102888e-04	ci right 9.023965e-04	k: 1343	n:1570000
GPATCH4   1570000 perm   1265 sec   (1241 perm/sec)   p_kst 8.554140e-04   p_cons 2.749363e-01   p_joint 5.044586e-04

Joint ci ratio: 1.387314e-01	ci left: 4.700213e-04	ci right 5.406913e-04	k: 797	n:1580000
Cons ci ratio: 5.064702e-03	ci left: 2.742172e-01	ci right 2.756102e-01	k: 434363	n:1580000
KS ci ratio: 1.066433e-01	ci left: 8.088564e-04	ci right 9.005840e-04	k: 1349	n:1580000
GPATCH4   1580000 perm   1280 sec   (1235 perm/sec)   p_kst 8.537975e-04   p_cons 2.749133e-01   p_joint 5.044304e-04

Joint ci ratio: 1.382127e-01	ci left: 4.707080e-04	ci right 5.411950e-04	k: 803	n:1590000
Cons ci ratio: 5.048560e-03	ci left: 2.742344e-01	ci right 2.756230e-01	k: 437136	n:1590000
KS ci ratio: 1.063679e-01	ci left: 8.080545e-04	ci right 8.994398e-04	k: 1356	n:1590000
GPATCH4   1590000 perm   1296 sec   (1227 perm/sec)   p_kst 8.528302e-04   p_cons 2.749283e-01   p_joint 5.050314e-04

Joint ci ratio: 1.337127e-01	ci left: 5.009727e-04	ci right 5.733551e-04	k: 858	n:1600000
Cons ci ratio: 5.032682e-03	ci left: 2.742427e-01	ci right 2.756269e-01	k: 439895	n:1600000
KS ci ratio: 1.059393e-01	ci left: 8.096966e-04	ci right 9.008757e-04	k: 1367	n:1600000
GPATCH4   1600000 perm   1311 sec   (1220 perm/sec)   p_kst 8.543750e-04   p_cons 2.749344e-01   p_joint 5.362500e-04

Joint ci ratio: 1.373611e-01	ci left: 4.708578e-04	ci right 5.408972e-04	k: 813	n:1610000
Cons ci ratio: 5.017101e-03	ci left: 2.742390e-01	ci right 2.756189e-01	k: 442635	n:1610000
KS ci ratio: 1.055542e-01	ci left: 8.107144e-04	ci right 9.016556e-04	k: 1377	n:1610000
GPATCH4   1610000 perm   1326 sec   (1214 perm/sec)   p_kst 8.552795e-04   p_cons 2.749286e-01   p_joint 5.049689e-04

Joint ci ratio: 1.328647e-01	ci left: 5.013515e-04	ci right 5.732931e-04	k: 869	n:1620000
Cons ci ratio: 5.001618e-03	ci left: 2.742391e-01	ci right 2.756148e-01	k: 445381	n:1620000
KS ci ratio: 1.052111e-01	ci left: 8.111191e-04	ci right 9.017917e-04	k: 1386	n:1620000
GPATCH4   1620000 perm   1342 sec   (1207 perm/sec)   p_kst 8.555556e-04   p_cons 2.749265e-01   p_joint 5.364198e-04

Joint ci ratio: 1.326363e-01	ci left: 5.000551e-04	ci right 5.716775e-04	k: 872	n:1630000
Cons ci ratio: 4.985617e-03	ci left: 2.742919e-01	ci right 2.756635e-01	k: 448213	n:1630000
KS ci ratio: 1.050221e-01	ci left: 8.091297e-04	ci right 8.994074e-04	k: 1391	n:1630000
GPATCH4   1630000 perm   1357 sec   (1201 perm/sec)   p_kst 8.533742e-04   p_cons 2.749773e-01   p_joint 5.349693e-04

Joint ci ratio: 1.324848e-01	ci left: 4.981850e-04	ci right 5.694517e-04	k: 874	n:1640000
Cons ci ratio: 4.970218e-03	ci left: 2.743082e-01	ci right 2.756755e-01	k: 450986	n:1640000
KS ci ratio: 1.047591e-01	ci left: 8.083523e-04	ci right 8.983034e-04	k: 1398	n:1640000
GPATCH4   1640000 perm   1371 sec   (1196 perm/sec)   p_kst 8.524390e-04   p_cons 2.749915e-01   p_joint 5.329268e-04

Joint ci ratio: 1.361952e-01	ci left: 4.676375e-04	ci right 5.365596e-04	k: 827	n:1650000
Cons ci ratio: 4.954899e-03	ci left: 2.743291e-01	ci right 2.756923e-01	k: 453767	n:1650000
KS ci ratio: 1.044980e-01	ci left: 8.075846e-04	ci right 8.972126e-04	k: 1405	n:1650000
GPATCH4   1650000 perm   1392 sec   (1186 perm/sec)   p_kst 8.515152e-04   p_cons 2.750103e-01   p_joint 5.012121e-04

Joint ci ratio: 1.358674e-01	ci left: 4.671480e-04	ci right 5.358189e-04	k: 831	n:1660000
Cons ci ratio: 4.939729e-03	ci left: 2.743491e-01	ci right 2.757083e-01	k: 456547	n:1660000
KS ci ratio: 1.042759e-01	ci left: 8.062397e-04	ci right 8.955165e-04	k: 1411	n:1660000
GPATCH4   1660000 perm   1409 sec   (1178 perm/sec)   p_kst 8.500000e-04   p_cons 2.750283e-01   p_joint 5.006024e-04

Joint ci ratio: 1.353801e-01	ci left: 4.678217e-04	ci right 5.363251e-04	k: 837	n:1670000
Cons ci ratio: 4.924772e-03	ci left: 2.743630e-01	ci right 2.757181e-01	k: 459317	n:1670000
KS ci ratio: 1.040551e-01	ci left: 8.049111e-04	ci right 8.938406e-04	k: 1417	n:1670000
GPATCH4   1670000 perm   1425 sec   (1172 perm/sec)   p_kst 8.485030e-04   p_cons 2.750401e-01   p_joint 5.011976e-04

Joint ci ratio: 1.351385e-01	ci left: 4.667623e-04	ci right 5.349788e-04	k: 840	n:1680000
Cons ci ratio: 4.910008e-03	ci left: 2.743719e-01	ci right 2.757229e-01	k: 462079	n:1680000
KS ci ratio: 1.037628e-01	ci left: 8.047581e-04	ci right 8.934057e-04	k: 1425	n:1680000
GPATCH4   1680000 perm   1443 sec   (1164 perm/sec)   p_kst 8.482143e-04   p_cons 2.750470e-01   p_joint 5.000000e-04

Joint ci ratio: 1.347386e-01	ci left: 4.668591e-04	ci right 5.348716e-04	k: 845	n:1690000
Cons ci ratio: 4.894563e-03	ci left: 2.744469e-01	ci right 2.757941e-01	k: 464953	n:1690000
KS ci ratio: 1.034369e-01	ci left: 8.051837e-04	ci right 8.935827e-04	k: 1434	n:1690000
GPATCH4   1690000 perm   1458 sec   (1159 perm/sec)   p_kst 8.485207e-04   p_cons 2.751201e-01   p_joint 5.000000e-04

Joint ci ratio: 1.345004e-01	ci left: 4.658181e-04	ci right 5.335495e-04	k: 848	n:1700000
Cons ci ratio: 4.880752e-03	ci left: 2.743994e-01	ci right 2.757425e-01	k: 467620	n:1700000
KS ci ratio: 1.033291e-01	ci left: 8.021663e-04	ci right 8.901367e-04	k: 1437	n:1700000
GPATCH4   1700000 perm   1474 sec   (1154 perm/sec)   p_kst 8.452941e-04   p_cons 2.750706e-01   p_joint 4.988235e-04

Joint ci ratio: 1.301987e-01	ci left: 4.953245e-04	ci right 5.648648e-04	k: 905	n:1710000
Cons ci ratio: 4.866229e-03	ci left: 2.744202e-01	ci right 2.757595e-01	k: 470403	n:1710000
KS ci ratio: 1.031858e-01	ci left: 7.997540e-04	ci right 8.873308e-04	k: 1441	n:1710000
GPATCH4   1710000 perm   1489 sec   (1148 perm/sec)   p_kst 8.426901e-04   p_cons 2.750895e-01   p_joint 5.292398e-04

Joint ci ratio: 1.337152e-01	ci left: 4.660205e-04	ci right 5.333543e-04	k: 858	n:1720000
Cons ci ratio: 4.852161e-03	ci left: 2.744141e-01	ci right 2.757494e-01	k: 473140	n:1720000
KS ci ratio: 1.028299e-01	ci left: 8.007685e-04	ci right 8.881356e-04	k: 1451	n:1720000
GPATCH4   1720000 perm   1506 sec   (1142 perm/sec)   p_kst 8.436047e-04   p_cons 2.750814e-01   p_joint 4.988372e-04

Joint ci ratio: 1.334050e-01	ci left: 4.655616e-04	ci right 5.326607e-04	k: 862	n:1730000
Cons ci ratio: 4.837513e-03	ci left: 2.744658e-01	ci right 2.757973e-01	k: 475977	n:1730000
KS ci ratio: 1.025478e-01	ci left: 8.006453e-04	ci right 8.877449e-04	k: 1459	n:1730000
GPATCH4   1730000 perm   1522 sec   (1136 perm/sec)   p_kst 8.433526e-04   p_cons 2.751312e-01   p_joint 4.982659e-04

Joint ci ratio: 1.330970e-01	ci left: 4.651082e-04	ci right 5.319749e-04	k: 866	n:1740000
Cons ci ratio: 4.823531e-03	ci left: 2.744727e-01	ci right 2.758004e-01	k: 478737	n:1740000
KS ci ratio: 1.023727e-01	ci left: 7.988438e-04	ci right 8.855901e-04	k: 1464	n:1740000
GPATCH4   1740000 perm   1539 sec   (1131 perm/sec)   p_kst 8.413793e-04   p_cons 2.751362e-01   p_joint 4.977011e-04

Joint ci ratio: 1.327148e-01	ci left: 4.652126e-04	ci right 5.318871e-04	k: 871	n:1750000
Cons ci ratio: 4.809526e-03	ci left: 2.744916e-01	ci right 2.758155e-01	k: 481518	n:1750000
KS ci ratio: 1.019559e-01	ci left: 8.009609e-04	ci right 8.875618e-04	k: 1476	n:1750000
GPATCH4   1750000 perm   1555 sec   (1125 perm/sec)   p_kst 8.434286e-04   p_cons 2.751531e-01   p_joint 4.977143e-04

Joint ci ratio: 1.323360e-01	ci left: 4.653161e-04	ci right 5.318000e-04	k: 876	n:1760000
Cons ci ratio: 4.795703e-03	ci left: 2.745051e-01	ci right 2.758252e-01	k: 484290	n:1760000
KS ci ratio: 1.015783e-01	ci left: 8.025010e-04	ci right 8.889278e-04	k: 1487	n:1760000
GPATCH4   1760000 perm   1573 sec   (1119 perm/sec)   p_kst 8.448864e-04   p_cons 2.751648e-01   p_joint 4.977273e-04

Joint ci ratio: 1.322607e-01	ci left: 4.632334e-04	ci right 5.293792e-04	k: 877	n:1770000
Cons ci ratio: 4.782649e-03	ci left: 2.744642e-01	ci right 2.757806e-01	k: 486966	n:1770000
KS ci ratio: 1.013742e-01	ci left: 8.012708e-04	ci right 8.873815e-04	k: 1493	n:1770000
GPATCH4   1770000 perm   1590 sec   (1113 perm/sec)   p_kst 8.435028e-04   p_cons 2.751220e-01   p_joint 4.954802e-04

Joint ci ratio: 1.317366e-01	ci left: 4.644337e-04	ci right 5.304675e-04	k: 884	n:1780000
Cons ci ratio: 4.769204e-03	ci left: 2.744654e-01	ci right 2.757780e-01	k: 489716	n:1780000
KS ci ratio: 1.009694e-01	ci left: 8.033403e-04	ci right 8.893083e-04	k: 1505	n:1780000
GPATCH4   1780000 perm   1607 sec   (1108 perm/sec)   p_kst 8.455056e-04   p_cons 2.751213e-01   p_joint 4.966292e-04

Joint ci ratio: 1.313660e-01	ci left: 4.645405e-04	ci right 5.303892e-04	k: 889	n:1790000
Cons ci ratio: 4.756105e-03	ci left: 2.744470e-01	ci right 2.757560e-01	k: 492431	n:1790000
KS ci ratio: 1.007689e-01	ci left: 8.021198e-04	ci right 8.877766e-04	k: 1511	n:1790000
GPATCH4   1790000 perm   1625 sec   (1102 perm/sec)   p_kst 8.441341e-04   p_cons 2.751011e-01   p_joint 4.966480e-04

Joint ci ratio: 1.310718e-01	ci left: 4.641090e-04	ci right 5.297377e-04	k: 893	n:1800000
Cons ci ratio: 4.743127e-03	ci left: 2.744277e-01	ci right 2.757330e-01	k: 495144	n:1800000
KS ci ratio: 1.004703e-01	ci left: 8.025377e-04	ci right 8.879703e-04	k: 1520	n:1800000
GPATCH4   1800000 perm   1643 sec   (1096 perm/sec)   p_kst 8.444444e-04   p_cons 2.750800e-01   p_joint 4.961111e-04

Joint ci ratio: 1.307796e-01	ci left: 4.636824e-04	ci right 5.290933e-04	k: 897	n:1810000
Cons ci ratio: 4.729880e-03	ci left: 2.744401e-01	ci right 2.757418e-01	k: 497914	n:1810000
KS ci ratio: 1.002728e-01	ci left: 8.013355e-04	ci right 8.864625e-04	k: 1526	n:1810000
GPATCH4   1810000 perm   1659 sec   (1091 perm/sec)   p_kst 8.430939e-04   p_cons 2.750906e-01   p_joint 4.955801e-04

Joint ci ratio: 1.302728e-01	ci left: 4.648553e-04	ci right 5.301578e-04	k: 904	n:1820000
Cons ci ratio: 4.716724e-03	ci left: 2.744540e-01	ci right 2.757522e-01	k: 500687	n:1820000
KS ci ratio: 9.984855e-02	ci left: 8.038967e-04	ci right 8.889133e-04	k: 1539	n:1820000
GPATCH4   1820000 perm   1679 sec   (1084 perm/sec)   p_kst 8.456044e-04   p_cons 2.751027e-01   p_joint 4.967033e-04

Joint ci ratio: 1.297007e-01	ci left: 4.665445e-04	ci right 5.317744e-04	k: 912	n:1830000
Cons ci ratio: 4.703659e-03	ci left: 2.744695e-01	ci right 2.757640e-01	k: 503463	n:1830000
KS ci ratio: 9.959022e-02	ci left: 8.037664e-04	ci right 8.885364e-04	k: 1547	n:1830000
GPATCH4   1830000 perm   1698 sec   (1077 perm/sec)   p_kst 8.453552e-04   p_cons 2.751164e-01   p_joint 4.983607e-04

Joint ci ratio: 1.296298e-01	ci left: 4.645348e-04	ci right 5.294455e-04	k: 913	n:1840000
Cons ci ratio: 4.690682e-03	ci left: 2.744863e-01	ci right 2.757774e-01	k: 506242	n:1840000
KS ci ratio: 9.942987e-02	ci left: 8.020478e-04	ci right 8.864925e-04	k: 1552	n:1840000
GPATCH4   1840000 perm   1716 sec   (1072 perm/sec)   p_kst 8.434783e-04   p_cons 2.751315e-01   p_joint 4.961957e-04

Joint ci ratio: 1.293471e-01	ci left: 4.641159e-04	ci right 5.288158e-04	k: 917	n:1850000
Cons ci ratio: 4.677640e-03	ci left: 2.745176e-01	ci right 2.758052e-01	k: 509048	n:1850000
KS ci ratio: 9.920658e-02	ci left: 8.014022e-04	ci right 8.855784e-04	k: 1559	n:1850000
GPATCH4   1850000 perm   1733 sec   (1068 perm/sec)   p_kst 8.427027e-04   p_cons 2.751611e-01   p_joint 4.956757e-04

Joint ci ratio: 1.291364e-01	ci left: 4.631814e-04	ci right 5.276377e-04	k: 920	n:1860000
Cons ci ratio: 4.665160e-03	ci left: 2.745099e-01	ci right 2.757940e-01	k: 511782	n:1860000
KS ci ratio: 9.907975e-02	ci left: 7.991908e-04	ci right 8.830211e-04	k: 1563	n:1860000
GPATCH4   1860000 perm   1750 sec   (1063 perm/sec)   p_kst 8.403226e-04   p_cons 2.751516e-01   p_joint 4.946237e-04

Joint ci ratio: 1.289266e-01	ci left: 4.622570e-04	ci right 5.264722e-04	k: 923	n:1870000
Cons ci ratio: 4.652854e-03	ci left: 2.744958e-01	ci right 2.757765e-01	k: 514504	n:1870000
KS ci ratio: 9.882733e-02	ci left: 7.990892e-04	ci right 8.826830e-04	k: 1571	n:1870000
GPATCH4   1870000 perm   1768 sec   (1058 perm/sec)   p_kst 8.401070e-04   p_cons 2.751358e-01   p_joint 4.935829e-04

Joint ci ratio: 1.285792e-01	ci left: 4.623721e-04	ci right 5.264170e-04	k: 928	n:1880000
Cons ci ratio: 4.640496e-03	ci left: 2.744947e-01	ci right 2.757720e-01	k: 517250	n:1880000
KS ci ratio: 9.854562e-02	ci left: 7.995079e-04	ci right 8.828932e-04	k: 1580	n:1880000
GPATCH4   1880000 perm   1787 sec   (1052 perm/sec)   p_kst 8.404255e-04   p_cons 2.751330e-01   p_joint 4.936170e-04

Joint ci ratio: 1.282346e-01	ci left: 4.624862e-04	ci right 5.263621e-04	k: 933	n:1890000
Cons ci ratio: 4.627892e-03	ci left: 2.745232e-01	ci right 2.757971e-01	k: 520052	n:1890000
KS ci ratio: 9.808127e-02	ci left: 8.030191e-04	ci right 8.863533e-04	k: 1595	n:1890000
GPATCH4   1890000 perm   1804 sec   (1048 perm/sec)   p_kst 8.439153e-04   p_cons 2.751598e-01   p_joint 4.936508e-04

Joint ci ratio: 1.278927e-01	ci left: 4.625993e-04	ci right 5.263077e-04	k: 938	n:1900000
Cons ci ratio: 4.615920e-03	ci left: 2.745056e-01	ci right 2.757761e-01	k: 522767	n:1900000
KS ci ratio: 9.783638e-02	ci left: 8.029001e-04	ci right 8.860019e-04	k: 1603	n:1900000
GPATCH4   1900000 perm   1822 sec   (1043 perm/sec)   p_kst 8.436842e-04   p_cons 2.751405e-01   p_joint 4.936842e-04

Joint ci ratio: 1.276890e-01	ci left: 4.616978e-04	ci right 5.251730e-04	k: 941	n:1910000
Cons ci ratio: 4.603733e-03	ci left: 2.745149e-01	ci right 2.757821e-01	k: 525533	n:1910000
KS ci ratio: 9.759332e-02	ci left: 8.027825e-04	ci right 8.856540e-04	k: 1611	n:1910000
GPATCH4   1910000 perm   1839 sec   (1039 perm/sec)   p_kst 8.434555e-04   p_cons 2.751482e-01   p_joint 4.926702e-04

Joint ci ratio: 1.271501e-01	ci left: 4.633270e-04	ci right 5.267371e-04	k: 949	n:1920000
Cons ci ratio: 4.591449e-03	ci left: 2.745408e-01	ci right 2.758047e-01	k: 528331	n:1920000
KS ci ratio: 9.732200e-02	ci left: 8.031746e-04	ci right 8.858429e-04	k: 1620	n:1920000
GPATCH4   1920000 perm   1857 sec   (1034 perm/sec)   p_kst 8.437500e-04   p_cons 2.751724e-01   p_joint 4.942708e-04

Joint ci ratio: 1.268168e-01	ci left: 4.634347e-04	ci right 5.266808e-04	k: 954	n:1930000
Cons ci ratio: 4.579579e-03	ci left: 2.745389e-01	ci right 2.757996e-01	k: 531076	n:1930000
KS ci ratio: 9.711258e-02	ci left: 8.025518e-04	ci right 8.849682e-04	k: 1627	n:1930000
GPATCH4   1930000 perm   1875 sec   (1029 perm/sec)   p_kst 8.430052e-04   p_cons 2.751689e-01   p_joint 4.943005e-04

Joint ci ratio: 1.264861e-01	ci left: 4.635416e-04	ci right 5.266249e-04	k: 959	n:1940000
Cons ci ratio: 4.567694e-03	ci left: 2.745464e-01	ci right 2.758038e-01	k: 533839	n:1940000
KS ci ratio: 9.672704e-02	ci left: 8.049536e-04	ci right 8.872698e-04	k: 1640	n:1940000
GPATCH4   1940000 perm   1893 sec   (1025 perm/sec)   p_kst 8.453608e-04   p_cons 2.751747e-01   p_joint 4.943299e-04

Joint ci ratio: 1.260274e-01	ci left: 4.646408e-04	ci right 5.276273e-04	k: 966	n:1950000
Cons ci ratio: 4.555913e-03	ci left: 2.745527e-01	ci right 2.758069e-01	k: 536600	n:1950000
KS ci ratio: 9.637522e-02	ci left: 8.068309e-04	ci right 8.890221e-04	k: 1652	n:1950000
GPATCH4   1950000 perm   1910 sec   (1021 perm/sec)   p_kst 8.471795e-04   p_cons 2.751795e-01   p_joint 4.953846e-04

Joint ci ratio: 1.258324e-01	ci left: 4.637526e-04	ci right 5.265141e-04	k: 969	n:1960000
Cons ci ratio: 4.544664e-03	ci left: 2.745203e-01	ci right 2.757712e-01	k: 539285	n:1960000
KS ci ratio: 9.611391e-02	ci left: 8.071958e-04	ci right 8.891886e-04	k: 1661	n:1960000
GPATCH4   1960000 perm   1929 sec   (1016 perm/sec)   p_kst 8.474490e-04   p_cons 2.751454e-01   p_joint 4.943878e-04

Joint ci ratio: 1.251248e-01	ci left: 4.668070e-04	ci right 5.296004e-04	k: 980	n:1970000
Cons ci ratio: 4.533163e-03	ci left: 2.745176e-01	ci right 2.757653e-01	k: 542028	n:1970000
KS ci ratio: 9.571150e-02	ci left: 8.100345e-04	ci right 8.919519e-04	k: 1675	n:1970000
GPATCH4   1970000 perm   1947 sec   (1012 perm/sec)   p_kst 8.502538e-04   p_cons 2.751411e-01   p_joint 4.974619e-04

Joint ci ratio: 1.249339e-01	ci left: 4.659172e-04	ci right 5.284881e-04	k: 983	n:1980000
Cons ci ratio: 4.522019e-03	ci left: 2.744912e-01	ci right 2.757357e-01	k: 544724	n:1980000
KS ci ratio: 9.534234e-02	ci left: 8.123523e-04	ci right 8.941695e-04	k: 1688	n:1980000
GPATCH4   1980000 perm   1965 sec   (1008 perm/sec)   p_kst 8.525253e-04   p_cons 2.751131e-01   p_joint 4.964646e-04

Joint ci ratio: 1.244291e-01	ci left: 4.674706e-04	ci right 5.299778e-04	k: 991	n:1990000
Cons ci ratio: 4.510314e-03	ci left: 2.745218e-01	ci right 2.757633e-01	k: 547533	n:1990000
KS ci ratio: 9.508932e-02	ci left: 8.126851e-04	ci right 8.943064e-04	k: 1697	n:1990000
GPATCH4   1990000 perm   1983 sec   (1004 perm/sec)   p_kst 8.527638e-04   p_cons 2.751422e-01   p_joint 4.979899e-04

Joint ci ratio: 1.239303e-01	ci left: 4.690090e-04	ci right 5.314521e-04	k: 999	n:2000000
Cons ci ratio: 4.499060e-03	ci left: 2.745202e-01	ci right 2.757585e-01	k: 550278	n:2000000
KS ci ratio: 9.467193e-02	ci left: 8.159437e-04	ci right 8.975127e-04	k: 1712	n:2000000
GPATCH4   2000000 perm   2000 sec   (1000 perm/sec)   p_kst 8.560000e-04   p_cons 2.751390e-01   p_joint 4.995000e-04

Joint ci ratio: 1.235601e-01	ci left: 4.695683e-04	ci right 5.318855e-04	k: 1005	n:2010000
Cons ci ratio: 4.487789e-03	ci left: 2.745275e-01	ci right 2.757627e-01	k: 553041	n:2010000
KS ci ratio: 9.453414e-02	ci left: 8.143130e-04	ci right 8.955939e-04	k: 1717	n:2010000
GPATCH4   2010000 perm   2018 sec   (996 perm/sec)   p_kst 8.542289e-04   p_cons 2.751448e-01   p_joint 5.000000e-04

Joint ci ratio: 1.231932e-01	ci left: 4.701224e-04	ci right 5.323143e-04	k: 1011	n:2020000
Cons ci ratio: 4.476898e-03	ci left: 2.745085e-01	ci right 2.757407e-01	k: 555751	n:2020000
KS ci ratio: 9.428749e-02	ci left: 8.146320e-04	ci right 8.957209e-04	k: 1726	n:2020000
GPATCH4   2020000 perm   2036 sec   (992 perm/sec)   p_kst 8.544554e-04   p_cons 2.751243e-01   p_joint 5.004950e-04

Joint ci ratio: 1.229505e-01	ci left: 4.697163e-04	ci right 5.317231e-04	k: 1015	n:2030000
Cons ci ratio: 4.466250e-03	ci left: 2.744749e-01	ci right 2.757040e-01	k: 558431	n:2030000
KS ci ratio: 9.404275e-02	ci left: 8.149481e-04	ci right 8.958463e-04	k: 1735	n:2030000
GPATCH4   2030000 perm   2055 sec   (988 perm/sec)   p_kst 8.546798e-04   p_cons 2.750892e-01   p_joint 5.000000e-04

Joint ci ratio: 1.224692e-01	ci left: 4.712150e-04	ci right 5.331585e-04	k: 1023	n:2040000
Cons ci ratio: 4.455295e-03	ci left: 2.744760e-01	ci right 2.757021e-01	k: 561181	n:2040000
KS ci ratio: 9.366570e-02	ci left: 8.176550e-04	ci right 8.984787e-04	k: 1749	n:2040000
GPATCH4   2040000 perm   2074 sec   (984 perm/sec)   p_kst 8.573529e-04   p_cons 2.750887e-01   p_joint 5.014706e-04

Joint ci ratio: 1.222903e-01	ci left: 4.703350e-04	ci right 5.320659e-04	k: 1026	n:2050000
Cons ci ratio: 4.444083e-03	ci left: 2.745073e-01	ci right 2.757304e-01	k: 563993	n:2050000
KS ci ratio: 9.350560e-02	ci left: 8.165247e-04	ci right 8.970912e-04	k: 1755	n:2050000
GPATCH4   2050000 perm   2092 sec   (980 perm/sec)   p_kst 8.560976e-04   p_cons 2.751185e-01   p_joint 5.004878e-04

Joint ci ratio: 1.219346e-01	ci left: 4.708755e-04	ci right 5.324846e-04	k: 1032	n:2060000
Cons ci ratio: 4.432944e-03	ci left: 2.745393e-01	ci right 2.757594e-01	k: 566807	n:2060000
KS ci ratio: 9.331982e-02	ci left: 8.158797e-04	ci right 8.962138e-04	k: 1762	n:2060000
GPATCH4   2060000 perm   2113 sec   (975 perm/sec)   p_kst 8.553398e-04   p_cons 2.751490e-01   p_joint 5.009709e-04

Joint ci ratio: 1.216992e-01	ci left: 4.704742e-04	ci right 5.319035e-04	k: 1036	n:2070000
Cons ci ratio: 4.422109e-03	ci left: 2.745511e-01	ci right 2.757684e-01	k: 569580	n:2070000
KS ci ratio: 9.302999e-02	ci left: 8.171285e-04	ci right 8.973220e-04	k: 1773	n:2070000
GPATCH4   2070000 perm   2131 sec   (971 perm/sec)   p_kst 8.565217e-04   p_cons 2.751594e-01   p_joint 5.004831e-04

Joint ci ratio: 1.212905e-01	ci left: 4.714754e-04	ci right 5.328138e-04	k: 1043	n:2080000
Cons ci ratio: 4.411979e-03	ci left: 2.745062e-01	ci right 2.757204e-01	k: 572235	n:2080000
KS ci ratio: 9.274285e-02	ci left: 8.183656e-04	ci right 8.984192e-04	k: 1784	n:2080000
GPATCH4   2080000 perm   2150 sec   (967 perm/sec)   p_kst 8.576923e-04   p_cons 2.751130e-01   p_joint 5.014423e-04

Joint ci ratio: 1.210588e-01	ci left: 4.710754e-04	ci right 5.322363e-04	k: 1047	n:2090000
Cons ci ratio: 4.401787e-03	ci left: 2.744736e-01	ci right 2.756849e-01	k: 574915	n:2090000
KS ci ratio: 9.258743e-02	ci left: 8.172542e-04	ci right 8.970579e-04	k: 1790	n:2090000
GPATCH4   2090000 perm   2169 sec   (964 perm/sec)   p_kst 8.564593e-04   p_cons 2.750789e-01   p_joint 5.009569e-04

Joint ci ratio: 1.207137e-01	ci left: 4.716029e-04	ci right 5.326454e-04	k: 1053	n:2100000
Cons ci ratio: 4.391624e-03	ci left: 2.744452e-01	ci right 2.756535e-01	k: 577603	n:2100000
KS ci ratio: 9.230435e-02	ci left: 8.184796e-04	ci right 8.981453e-04	k: 1801	n:2100000
GPATCH4   2100000 perm   2188 sec   (960 perm/sec)   p_kst 8.576190e-04   p_cons 2.750490e-01   p_joint 5.014286e-04

Joint ci ratio: 1.203148e-01	ci left: 4.725854e-04	ci right 5.335385e-04	k: 1060	n:2110000
Cons ci ratio: 4.381280e-03	ci left: 2.744397e-01	ci right 2.756452e-01	k: 580339	n:2110000
KS ci ratio: 9.202385e-02	ci left: 8.196937e-04	ci right 8.992221e-04	k: 1812	n:2110000
GPATCH4   2110000 perm   2207 sec   (956 perm/sec)   p_kst 8.587678e-04   p_cons 2.750422e-01   p_joint 5.023697e-04

Joint ci ratio: 1.200887e-01	ci left: 4.721863e-04	ci right 5.329653e-04	k: 1064	n:2120000
Cons ci ratio: 4.370921e-03	ci left: 2.744424e-01	ci right 2.756450e-01	k: 583092	n:2120000
KS ci ratio: 9.187201e-02	ci left: 8.185923e-04	ci right 8.978758e-04	k: 1818	n:2120000
GPATCH4   2120000 perm   2226 sec   (953 perm/sec)   p_kst 8.575472e-04   p_cons 2.750434e-01   p_joint 5.018868e-04

Joint ci ratio: 1.199199e-01	ci left: 4.713356e-04	ci right 5.319138e-04	k: 1067	n:2130000
Cons ci ratio: 4.360405e-03	ci left: 2.744661e-01	ci right 2.756660e-01	k: 585890	n:2130000
KS ci ratio: 9.174608e-02	ci left: 8.170426e-04	ci right 8.960617e-04	k: 1823	n:2130000
GPATCH4   2130000 perm   2245 sec   (949 perm/sec)   p_kst 8.558685e-04   p_cons 2.750657e-01   p_joint 5.009390e-04

Joint ci ratio: 1.195288e-01	ci left: 4.723062e-04	ci right 5.327972e-04	k: 1074	n:2140000
Cons ci ratio: 4.350086e-03	ci left: 2.744784e-01	ci right 2.756755e-01	k: 588664	n:2140000
KS ci ratio: 9.142078e-02	ci left: 8.191603e-04	ci right 8.980883e-04	k: 1836	n:2140000
GPATCH4   2140000 perm   2265 sec   (945 perm/sec)   p_kst 8.579439e-04   p_cons 2.750766e-01   p_joint 5.018692e-04

Joint ci ratio: 1.193624e-01	ci left: 4.714631e-04	ci right 5.317561e-04	k: 1077	n:2150000
Cons ci ratio: 4.339805e-03	ci left: 2.744939e-01	ci right 2.756881e-01	k: 591445	n:2150000
KS ci ratio: 9.127190e-02	ci left: 8.180772e-04	ci right 8.967656e-04	k: 1842	n:2150000
GPATCH4   2150000 perm   2285 sec   (941 perm/sec)   p_kst 8.567442e-04   p_cons 2.750907e-01   p_joint 5.009302e-04

Joint ci ratio: 1.191968e-01	ci left: 4.706278e-04	ci right 5.307246e-04	k: 1080	n:2160000
Cons ci ratio: 4.329807e-03	ci left: 2.744897e-01	ci right 2.756812e-01	k: 594184	n:2160000
KS ci ratio: 9.107446e-02	ci left: 8.179091e-04	ci right 8.964021e-04	k: 1850	n:2160000
GPATCH4   2160000 perm   2305 sec   (937 perm/sec)   p_kst 8.564815e-04   p_cons 2.750852e-01   p_joint 5.000000e-04

Joint ci ratio: 1.189769e-01	ci left: 4.702474e-04	ci right 5.301770e-04	k: 1084	n:2170000
Cons ci ratio: 4.319758e-03	ci left: 2.744967e-01	ci right 2.756855e-01	k: 596947	n:2170000
KS ci ratio: 9.097631e-02	ci left: 8.159412e-04	ci right 8.941565e-04	k: 1854	n:2170000
GPATCH4   2170000 perm   2325 sec   (933 perm/sec)   p_kst 8.543779e-04   p_cons 2.750908e-01   p_joint 4.995392e-04

Joint ci ratio: 1.184322e-01	ci left: 4.725413e-04	ci right 5.324683e-04	k: 1094	n:2180000
Cons ci ratio: 4.309363e-03	ci left: 2.745421e-01	ci right 2.757282e-01	k: 599794	n:2180000
KS ci ratio: 9.073205e-02	ci left: 8.166813e-04	ci right 8.947462e-04	k: 1864	n:2180000
GPATCH4   2180000 perm   2348 sec   (928 perm/sec)   p_kst 8.550459e-04   p_cons 2.751349e-01   p_joint 5.018349e-04

Joint ci ratio: 1.182165e-01	ci left: 4.721560e-04	ci right 5.319174e-04	k: 1098	n:2190000
Cons ci ratio: 4.299407e-03	ci left: 2.745533e-01	ci right 2.757367e-01	k: 602567	n:2190000
KS ci ratio: 9.051390e-02	ci left: 8.169686e-04	ci right 8.948633e-04	k: 1873	n:2190000
GPATCH4   2190000 perm   2369 sec   (924 perm/sec)   p_kst 8.552511e-04   p_cons 2.751447e-01   p_joint 5.013699e-04

Joint ci ratio: 1.178951e-01	ci left: 4.726566e-04	ci right 5.323074e-04	k: 1104	n:2200000
Cons ci ratio: 4.289626e-03	ci left: 2.745545e-01	ci right 2.757352e-01	k: 605318	n:2200000
KS ci ratio: 9.034536e-02	ci left: 8.163650e-04	ci right 8.940495e-04	k: 1880	n:2200000
GPATCH4   2200000 perm   2391 sec   (920 perm/sec)   p_kst 8.545455e-04   p_cons 2.751445e-01   p_joint 5.018182e-04

Joint ci ratio: 1.175234e-01	ci left: 4.735920e-04	ci right 5.331594e-04	k: 1111	n:2210000
Cons ci ratio: 4.279980e-03	ci left: 2.745493e-01	ci right 2.757273e-01	k: 608055	n:2210000
KS ci ratio: 9.008229e-02	ci left: 8.175361e-04	ci right 8.950936e-04	k: 1891	n:2210000
GPATCH4   2210000 perm   2411 sec   (916 perm/sec)   p_kst 8.556561e-04   p_cons 2.751380e-01   p_joint 5.027149e-04

Joint ci ratio: 1.173126e-01	ci left: 4.732076e-04	ci right 5.326125e-04	k: 1115	n:2220000
Cons ci ratio: 4.270472e-03	ci left: 2.745374e-01	ci right 2.757127e-01	k: 610777	n:2220000
KS ci ratio: 8.986879e-02	ci left: 8.178164e-04	ci right 8.952069e-04	k: 1900	n:2220000
GPATCH4   2220000 perm   2431 sec   (913 perm/sec)   p_kst 8.558559e-04   p_cons 2.751248e-01   p_joint 5.022523e-04

Joint ci ratio: 1.170507e-01	ci left: 4.732620e-04	ci right 5.325319e-04	k: 1120	n:2230000
Cons ci ratio: 4.261050e-03	ci left: 2.745234e-01	ci right 2.756961e-01	k: 613494	n:2230000
KS ci ratio: 8.958641e-02	ci left: 8.194095e-04	ci right 8.966944e-04	k: 1912	n:2230000
GPATCH4   2230000 perm   2452 sec   (910 perm/sec)   p_kst 8.573991e-04   p_cons 2.751094e-01   p_joint 5.022422e-04

Joint ci ratio: 1.167387e-01	ci left: 4.737495e-04	ci right 5.329114e-04	k: 1126	n:2240000
Cons ci ratio: 4.251562e-03	ci left: 2.745215e-01	ci right 2.756916e-01	k: 616238	n:2240000
KS ci ratio: 8.939968e-02	ci left: 8.192429e-04	ci right 8.963426e-04	k: 1920	n:2240000
GPATCH4   2240000 perm   2472 sec   (906 perm/sec)   p_kst 8.571429e-04   p_cons 2.751062e-01   p_joint 5.026786e-04

Joint ci ratio: 1.164806e-01	ci left: 4.738014e-04	ci right 5.328299e-04	k: 1131	n:2250000
Cons ci ratio: 4.242203e-03	ci left: 2.745135e-01	ci right 2.756809e-01	k: 618968	n:2250000
KS ci ratio: 8.919099e-02	ci left: 8.195125e-04	ci right 8.964482e-04	k: 1929	n:2250000
GPATCH4   2250000 perm   2491 sec   (903 perm/sec)   p_kst 8.573333e-04   p_cons 2.750969e-01   p_joint 5.026667e-04

Joint ci ratio: 1.160711e-01	ci left: 4.751418e-04	ci right 5.341150e-04	k: 1139	n:2260000
Cons ci ratio: 4.232990e-03	ci left: 2.744975e-01	ci right 2.756623e-01	k: 621680	n:2260000
KS ci ratio: 8.893785e-02	ci left: 8.206452e-04	ci right 8.974572e-04	k: 1940	n:2260000
GPATCH4   2260000 perm   2510 sec   (900 perm/sec)   p_kst 8.584071e-04   p_cons 2.750796e-01   p_joint 5.039823e-04

Joint ci ratio: 1.158680e-01	ci left: 4.747597e-04	ci right 5.335752e-04	k: 1143	n:2270000
Cons ci ratio: 4.223557e-03	ci left: 2.745081e-01	ci right 2.756704e-01	k: 624452	n:2270000
KS ci ratio: 8.870960e-02	ci left: 8.213375e-04	ci right 8.980068e-04	k: 1950	n:2270000
GPATCH4   2270000 perm   2529 sec   (897 perm/sec)   p_kst 8.590308e-04   p_cons 2.750890e-01   p_joint 5.035242e-04

Joint ci ratio: 1.154649e-01	ci left: 4.760847e-04	ci right 5.348452e-04	k: 1151	n:2280000
Cons ci ratio: 4.214303e-03	ci left: 2.745077e-01	ci right 2.756674e-01	k: 627199	n:2280000
KS ci ratio: 8.850569e-02	ci left: 8.215950e-04	ci right 8.981029e-04	k: 1959	n:2280000
GPATCH4   2280000 perm   2549 sec   (895 perm/sec)   p_kst 8.592105e-04   p_cons 2.750873e-01   p_joint 5.048246e-04

Joint ci ratio: 1.151654e-01	ci left: 4.765502e-04	ci right 5.352053e-04	k: 1157	n:2290000
Cons ci ratio: 4.204865e-03	ci left: 2.745304e-01	ci right 2.756876e-01	k: 629999	n:2290000
KS ci ratio: 8.830318e-02	ci left: 8.218505e-04	ci right 8.981981e-04	k: 1968	n:2290000
GPATCH4   2290000 perm   2568 sec   (892 perm/sec)   p_kst 8.593886e-04   p_cons 2.751087e-01   p_joint 5.052402e-04

Joint ci ratio: 1.150165e-01	ci left: 4.757450e-04	ci right 5.342202e-04	k: 1160	n:2300000
Cons ci ratio: 4.195834e-03	ci left: 2.745203e-01	ci right 2.756750e-01	k: 632724	n:2300000
KS ci ratio: 8.810205e-02	ci left: 8.221040e-04	ci right 8.982922e-04	k: 1977	n:2300000
GPATCH4   2300000 perm   2588 sec   (889 perm/sec)   p_kst 8.595652e-04   p_cons 2.750974e-01   p_joint 5.043478e-04

Joint ci ratio: 1.148683e-01	ci left: 4.749469e-04	ci right 5.332436e-04	k: 1163	n:2310000
Cons ci ratio: 4.186574e-03	ci left: 2.745376e-01	ci right 2.756898e-01	k: 635512	n:2310000
KS ci ratio: 8.796878e-02	ci left: 8.210853e-04	ci right 8.970581e-04	k: 1983	n:2310000
GPATCH4   2310000 perm   2609 sec   (885 perm/sec)   p_kst 8.584416e-04   p_cons 2.751134e-01   p_joint 5.034632e-04

Joint ci ratio: 1.146223e-01	ci left: 4.749930e-04	ci right 5.331621e-04	k: 1168	n:2320000
Cons ci ratio: 4.177650e-03	ci left: 2.745285e-01	ci right 2.756781e-01	k: 638239	n:2320000
KS ci ratio: 8.776992e-02	ci left: 8.213402e-04	ci right 8.971560e-04	k: 1992	n:2320000
GPATCH4   2320000 perm   2629 sec   (882 perm/sec)   p_kst 8.586207e-04   p_cons 2.751030e-01   p_joint 5.034483e-04

Joint ci ratio: 1.144268e-01	ci left: 4.746220e-04	ci right 5.326398e-04	k: 1172	n:2330000
Cons ci ratio: 4.168895e-03	ci left: 2.745087e-01	ci right 2.756559e-01	k: 640941	n:2330000
KS ci ratio: 8.750681e-02	ci left: 8.228525e-04	ci right 8.985685e-04	k: 2004	n:2330000
GPATCH4   2330000 perm   2651 sec   (879 perm/sec)   p_kst 8.600858e-04   p_cons 2.750820e-01   p_joint 5.030043e-04

Joint ci ratio: 1.141352e-01	ci left: 4.750845e-04	ci right 5.330009e-04	k: 1178	n:2340000
Cons ci ratio: 4.159696e-03	ci left: 2.745369e-01	ci right 2.756816e-01	k: 643755	n:2340000
KS ci ratio: 8.739797e-02	ci left: 8.214261e-04	ci right 8.969120e-04	k: 2009	n:2340000
GPATCH4   2340000 perm   2672 sec   (876 perm/sec)   p_kst 8.585470e-04   p_cons 2.751090e-01   p_joint 5.034188e-04

Joint ci ratio: 1.138459e-01	ci left: 4.755433e-04	ci right 5.333587e-04	k: 1184	n:2350000
Cons ci ratio: 4.150948e-03	ci left: 2.745274e-01	ci right 2.756697e-01	k: 646481	n:2350000
KS ci ratio: 8.724621e-02	ci left: 8.208443e-04	ci right 8.961391e-04	k: 2016	n:2350000
GPATCH4   2350000 perm   2693 sec   (873 perm/sec)   p_kst 8.578723e-04   p_cons 2.750983e-01   p_joint 5.038298e-04

Joint ci ratio: 1.136064e-01	ci left: 4.755866e-04	ci right 5.332776e-04	k: 1189	n:2360000
Cons ci ratio: 4.142197e-03	ci left: 2.745235e-01	ci right 2.756634e-01	k: 649220	n:2360000
KS ci ratio: 8.698777e-02	ci left: 8.223401e-04	ci right 8.975374e-04	k: 2028	n:2360000
GPATCH4   2360000 perm   2713 sec   (870 perm/sec)   p_kst 8.593220e-04   p_cons 2.750932e-01   p_joint 5.038136e-04

Joint ci ratio: 1.133211e-01	ci left: 4.760397e-04	ci right 5.336310e-04	k: 1195	n:2370000
Cons ci ratio: 4.133466e-03	ci left: 2.745231e-01	ci right 2.756606e-01	k: 651967	n:2370000
KS ci ratio: 8.685948e-02	ci left: 8.213470e-04	ci right 8.963370e-04	k: 2034	n:2370000
GPATCH4   2370000 perm   2734 sec   (867 perm/sec)   p_kst 8.582278e-04   p_cons 2.750916e-01   p_joint 5.042194e-04

Joint ci ratio: 1.130850e-01	ci left: 4.760809e-04	ci right 5.335491e-04	k: 1200	n:2380000
Cons ci ratio: 4.125029e-03	ci left: 2.744996e-01	ci right 2.756346e-01	k: 654659	n:2380000
KS ci ratio: 8.666804e-02	ci left: 8.215954e-04	ci right 8.964344e-04	k: 2043	n:2380000
GPATCH4   2380000 perm   2755 sec   (864 perm/sec)   p_kst 8.584034e-04   p_cons 2.750668e-01   p_joint 5.042017e-04

Joint ci ratio: 1.128503e-01	ci left: 4.761219e-04	ci right 5.334678e-04	k: 1205	n:2390000
Cons ci ratio: 4.116298e-03	ci left: 2.745097e-01	ci right 2.756424e-01	k: 657431	n:2390000
KS ci ratio: 8.647785e-02	ci left: 8.218419e-04	ci right 8.965308e-04	k: 2052	n:2390000
GPATCH4   2390000 perm   2777 sec   (860 perm/sec)   p_kst 8.585774e-04   p_cons 2.750757e-01   p_joint 5.041841e-04

Joint ci ratio: 1.126171e-01	ci left: 4.761626e-04	ci right 5.333871e-04	k: 1210	n:2400000
Cons ci ratio: 4.107854e-03	ci left: 2.744972e-01	ci right 2.756275e-01	k: 660149	n:2400000
KS ci ratio: 8.635181e-02	ci left: 8.208635e-04	ci right 8.953493e-04	k: 2058	n:2400000
GPATCH4   2400000 perm   2798 sec   (858 perm/sec)   p_kst 8.575000e-04   p_cons 2.750621e-01   p_joint 5.041667e-04

Joint ci ratio: 1.124779e-01	ci left: 4.753966e-04	ci right 5.324537e-04	k: 1213	n:2410000
Cons ci ratio: 4.099372e-03	ci left: 2.744936e-01	ci right 2.756215e-01	k: 662888	n:2410000
KS ci ratio: 8.626813e-02	ci left: 8.190814e-04	ci right 8.933298e-04	k: 2062	n:2410000
GPATCH4   2410000 perm   2820 sec   (855 perm/sec)   p_kst 8.556017e-04   p_cons 2.750573e-01   p_joint 5.033195e-04

Joint ci ratio: 1.124317e-01	ci left: 4.738338e-04	ci right 5.306784e-04	k: 1214	n:2420000
Cons ci ratio: 4.090884e-03	ci left: 2.744957e-01	ci right 2.756213e-01	k: 665641	n:2420000
KS ci ratio: 8.608056e-02	ci left: 8.193356e-04	ci right 8.934375e-04	k: 2071	n:2420000
GPATCH4   2420000 perm   2842 sec   (851 perm/sec)   p_kst 8.557851e-04   p_cons 2.750583e-01   p_joint 5.016529e-04

Joint ci ratio: 1.122471e-01	ci left: 4.734837e-04	ci right 5.301869e-04	k: 1218	n:2430000
Cons ci ratio: 4.082603e-03	ci left: 2.744827e-01	ci right 2.756059e-01	k: 668357	n:2430000
KS ci ratio: 8.595624e-02	ci left: 8.183798e-04	ci right 8.922830e-04	k: 2077	n:2430000
GPATCH4   2430000 perm   2864 sec   (849 perm/sec)   p_kst 8.547325e-04   p_cons 2.750440e-01   p_joint 5.012346e-04

Joint ci ratio: 1.119262e-01	ci left: 4.743316e-04	ci right 5.309632e-04	k: 1225	n:2440000
Cons ci ratio: 4.074013e-03	ci left: 2.745049e-01	ci right 2.756259e-01	k: 671159	n:2440000
KS ci ratio: 8.575014e-02	ci left: 8.190362e-04	ci right 8.928124e-04	k: 2087	n:2440000
GPATCH4   2440000 perm   2885 sec   (846 perm/sec)   p_kst 8.553279e-04   p_cons 2.750652e-01   p_joint 5.020492e-04

Joint ci ratio: 1.117440e-01	ci left: 4.739825e-04	ci right 5.304743e-04	k: 1229	n:2450000
Cons ci ratio: 4.065584e-03	ci left: 2.745164e-01	ci right 2.756351e-01	k: 673935	n:2450000
KS ci ratio: 8.552511e-02	ci left: 8.200869e-04	ci right 8.937542e-04	k: 2098	n:2450000
GPATCH4   2450000 perm   2907 sec   (843 perm/sec)   p_kst 8.563265e-04   p_cons 2.750755e-01   p_joint 5.016327e-04

Joint ci ratio: 1.115176e-01	ci left: 4.740315e-04	ci right 5.304071e-04	k: 1234	n:2460000
Cons ci ratio: 4.057320e-03	ci left: 2.745168e-01	ci right 2.756333e-01	k: 676684	n:2460000
KS ci ratio: 8.542349e-02	ci left: 8.187422e-04	ci right 8.921970e-04	k: 2103	n:2460000
GPATCH4   2460000 perm   2930 sec   (840 perm/sec)   p_kst 8.548780e-04   p_cons 2.750748e-01   p_joint 5.016260e-04

Joint ci ratio: 1.112477e-01	ci left: 4.744739e-04	ci right 5.307565e-04	k: 1240	n:2470000
Cons ci ratio: 4.049175e-03	ci left: 2.745104e-01	ci right 2.756246e-01	k: 679416	n:2470000
KS ci ratio: 8.514060e-02	ci left: 8.209747e-04	ci right 8.943737e-04	k: 2117	n:2470000
GPATCH4   2470000 perm   2951 sec   (837 perm/sec)   p_kst 8.570850e-04   p_cons 2.750672e-01   p_joint 5.020243e-04

Joint ci ratio: 1.108464e-01	ci left: 4.760889e-04	ci right 5.323462e-04	k: 1249	n:2480000
Cons ci ratio: 4.041076e-03	ci left: 2.745044e-01	ci right 2.756163e-01	k: 682149	n:2480000
KS ci ratio: 8.486051e-02	ci left: 8.231895e-04	ci right 8.965325e-04	k: 2131	n:2480000
GPATCH4   2480000 perm   2973 sec   (834 perm/sec)   p_kst 8.592742e-04   p_cons 2.750601e-01   p_joint 5.036290e-04

Joint ci ratio: 1.103180e-01	ci left: 4.788629e-04	ci right 5.351607e-04	k: 1261	n:2490000
Cons ci ratio: 4.032821e-03	ci left: 2.745185e-01	ci right 2.756282e-01	k: 684932	n:2490000
KS ci ratio: 8.464239e-02	ci left: 8.242076e-04	ci right 8.974432e-04	k: 2142	n:2490000
GPATCH4   2490000 perm   2994 sec   (832 perm/sec)   p_kst 8.602410e-04   p_cons 2.750731e-01   p_joint 5.064257e-04

Joint ci ratio: 1.101871e-01	ci left: 4.781144e-04	ci right 5.342531e-04	k: 1264	n:2500000
Cons ci ratio: 4.024553e-03	ci left: 2.745389e-01	ci right 2.756464e-01	k: 687731	n:2500000
KS ci ratio: 8.450452e-02	ci left: 8.236515e-04	ci right 8.967126e-04	k: 2149	n:2500000
GPATCH4   2500000 perm   3015 sec   (829 perm/sec)   p_kst 8.596000e-04   p_cons 2.750924e-01   p_joint 5.056000e-04

Joint ci ratio: 1.098835e-01	ci left: 4.789217e-04	ci right 5.349902e-04	k: 1271	n:2510000
Cons ci ratio: 4.016331e-03	ci left: 2.745596e-01	ci right 2.756649e-01	k: 690531	n:2510000
KS ci ratio: 8.428913e-02	ci left: 8.246600e-04	ci right 8.976150e-04	k: 2160	n:2510000
GPATCH4   2510000 perm   3036 sec   (827 perm/sec)   p_kst 8.605578e-04   p_cons 2.751120e-01   p_joint 5.063745e-04

Joint ci ratio: 1.098404e-01	ci left: 4.774071e-04	ci right 5.332750e-04	k: 1272	n:2520000
Cons ci ratio: 4.008307e-03	ci left: 2.745654e-01	ci right 2.756685e-01	k: 693294	n:2520000
KS ci ratio: 8.411415e-02	ci left: 8.248838e-04	ci right 8.976996e-04	k: 2169	n:2520000
GPATCH4   2520000 perm   3058 sec   (824 perm/sec)   p_kst 8.607143e-04   p_cons 2.751167e-01   p_joint 5.047619e-04

Joint ci ratio: 1.096253e-01	ci left: 4.774421e-04	ci right 5.331977e-04	k: 1277	n:2530000
Cons ci ratio: 4.000422e-03	ci left: 2.745620e-01	ci right 2.756630e-01	k: 696034	n:2530000
KS ci ratio: 8.395954e-02	ci left: 8.247190e-04	ci right 8.973799e-04	k: 2177	n:2530000
GPATCH4   2530000 perm   3082 sec   (821 perm/sec)   p_kst 8.604743e-04   p_cons 2.751123e-01   p_joint 5.047431e-04

Joint ci ratio: 1.094969e-01	ci left: 4.767112e-04	ci right 5.323119e-04	k: 1280	n:2540000
Cons ci ratio: 3.992614e-03	ci left: 2.745556e-01	ci right 2.756544e-01	k: 698766	n:2540000
KS ci ratio: 8.382497e-02	ci left: 8.241702e-04	ci right 8.966606e-04	k: 2184	n:2540000
GPATCH4   2540000 perm   3104 sec   (818 perm/sec)   p_kst 8.598425e-04   p_cons 2.751047e-01   p_joint 5.039370e-04

Joint ci ratio: 1.092414e-01	ci left: 4.771303e-04	ci right 5.326417e-04	k: 1286	n:2550000
Cons ci ratio: 3.984708e-03	ci left: 2.745637e-01	ci right 2.756603e-01	k: 701535	n:2550000
KS ci ratio: 8.372928e-02	ci left: 8.228578e-04	ci right 8.951462e-04	k: 2189	n:2550000
GPATCH4   2550000 perm   3127 sec   (816 perm/sec)   p_kst 8.584314e-04   p_cons 2.751118e-01   p_joint 5.043137e-04

Joint ci ratio: 1.089454e-01	ci left: 4.779263e-04	ci right 5.333700e-04	k: 1293	n:2560000
Cons ci ratio: 3.976548e-03	ci left: 2.746018e-01	ci right 2.756963e-01	k: 704381	n:2560000
KS ci ratio: 8.357678e-02	ci left: 8.227031e-04	ci right 8.948399e-04	k: 2197	n:2560000
GPATCH4   2560000 perm   3149 sec   (813 perm/sec)   p_kst 8.582031e-04   p_cons 2.751488e-01   p_joint 5.050781e-04

Joint ci ratio: 1.086937e-01	ci left: 4.783377e-04	ci right 5.336928e-04	k: 1299	n:2570000
Cons ci ratio: 3.968647e-03	ci left: 2.746186e-01	ci right 2.757110e-01	k: 707173	n:2570000
KS ci ratio: 8.336839e-02	ci left: 8.236928e-04	ci right 8.957275e-04	k: 2208	n:2570000
GPATCH4   2570000 perm   3172 sec   (810 perm/sec)   p_kst 8.591440e-04   p_cons 2.751646e-01   p_joint 5.054475e-04

Joint ci ratio: 1.084437e-01	ci left: 4.787462e-04	ci right 5.340129e-04	k: 1305	n:2580000
Cons ci ratio: 3.960682e-03	ci left: 2.746466e-01	ci right 2.757369e-01	k: 709994	n:2580000
KS ci ratio: 8.316155e-02	ci left: 8.246750e-04	ci right 8.966080e-04	k: 2219	n:2580000
GPATCH4   2580000 perm   3193 sec   (808 perm/sec)   p_kst 8.600775e-04   p_cons 2.751915e-01   p_joint 5.058140e-04

Joint ci ratio: 1.082367e-01	ci left: 4.787759e-04	ci right 5.339339e-04	k: 1310	n:2590000
Cons ci ratio: 3.953418e-03	ci left: 2.746083e-01	ci right 2.756965e-01	k: 712644	n:2590000
KS ci ratio: 8.299348e-02	ci left: 8.248936e-04	ci right 8.966932e-04	k: 2228	n:2590000
GPATCH4   2590000 perm   3215 sec   (806 perm/sec)   p_kst 8.602317e-04   p_cons 2.751521e-01   p_joint 5.057915e-04

Joint ci ratio: 1.079899e-01	ci left: 4.791798e-04	ci right 5.342503e-04	k: 1316	n:2600000
Cons ci ratio: 3.945951e-03	ci left: 2.745949e-01	ci right 2.756810e-01	k: 715358	n:2600000
KS ci ratio: 8.278941e-02	ci left: 8.258641e-04	ci right 8.975628e-04	k: 2239	n:2600000
GPATCH4   2600000 perm   3238 sec   (803 perm/sec)   p_kst 8.611538e-04   p_cons 2.751377e-01   p_joint 5.061538e-04

Joint ci ratio: 1.076633e-01	ci left: 4.803263e-04	ci right 5.353512e-04	k: 1324	n:2610000
Cons ci ratio: 3.938825e-03	ci left: 2.745514e-01	ci right 2.756353e-01	k: 717993	n:2610000
KS ci ratio: 8.260521e-02	ci left: 8.264520e-04	ci right 8.980345e-04	k: 2249	n:2610000
GPATCH4   2610000 perm   3261 sec   (800 perm/sec)   p_kst 8.616858e-04   p_cons 2.750931e-01   p_joint 5.072797e-04

Joint ci ratio: 1.075417e-01	ci left: 4.796072e-04	ci right 5.344837e-04	k: 1327	n:2620000
Cons ci ratio: 3.931011e-03	ci left: 2.745818e-01	ci right 2.756637e-01	k: 720821	n:2620000
KS ci ratio: 8.249533e-02	ci left: 8.255404e-04	ci right 8.969443e-04	k: 2255	n:2620000
GPATCH4   2620000 perm   3284 sec   (798 perm/sec)   p_kst 8.606870e-04   p_cons 2.751225e-01   p_joint 5.064885e-04

Joint ci ratio: 1.073801e-01	ci left: 4.792636e-04	ci right 5.340132e-04	k: 1331	n:2630000
Cons ci ratio: 3.923437e-03	ci left: 2.745923e-01	ci right 2.756721e-01	k: 723597	n:2630000
KS ci ratio: 8.234946e-02	ci left: 8.253806e-04	ci right 8.966384e-04	k: 2263	n:2630000
GPATCH4   2630000 perm   3307 sec   (795 perm/sec)   p_kst 8.604563e-04   p_cons 2.751319e-01   p_joint 5.060837e-04

Joint ci ratio: 1.072594e-01	ci left: 4.785541e-04	ci right 5.331573e-04	k: 1334	n:2640000
Cons ci ratio: 3.916060e-03	ci left: 2.745871e-01	ci right 2.756649e-01	k: 726332	n:2640000
KS ci ratio: 8.218626e-02	ci left: 8.255931e-04	ci right 8.967212e-04	k: 2272	n:2640000
GPATCH4   2640000 perm   3331 sec   (793 perm/sec)   p_kst 8.606061e-04   p_cons 2.751258e-01   p_joint 5.053030e-04

Joint ci ratio: 1.071392e-01	ci left: 4.778499e-04	ci right 5.323078e-04	k: 1337	n:2650000
Cons ci ratio: 3.908444e-03	ci left: 2.746107e-01	ci right 2.756864e-01	k: 729143	n:2650000
KS ci ratio: 8.197012e-02	ci left: 8.269131e-04	ci right 8.979585e-04	k: 2284	n:2650000
GPATCH4   2650000 perm   3354 sec   (790 perm/sec)   p_kst 8.618868e-04   p_cons 2.751483e-01   p_joint 5.045283e-04

Joint ci ratio: 1.068997e-01	ci left: 4.782488e-04	ci right 5.326226e-04	k: 1343	n:2660000
Cons ci ratio: 3.901276e-03	ci left: 2.745927e-01	ci right 2.756664e-01	k: 731844	n:2660000
KS ci ratio: 8.177349e-02	ci left: 8.278551e-04	ci right 8.988027e-04	k: 2295	n:2660000
GPATCH4   2660000 perm   3377 sec   (788 perm/sec)   p_kst 8.627820e-04   p_cons 2.751293e-01   p_joint 5.048872e-04

Joint ci ratio: 1.067410e-01	ci left: 4.779157e-04	ci right 5.321659e-04	k: 1347	n:2670000
Cons ci ratio: 3.894030e-03	ci left: 2.745869e-01	ci right 2.756586e-01	k: 734577	n:2670000
KS ci ratio: 8.154290e-02	ci left: 8.295240e-04	ci right 9.004047e-04	k: 2308	n:2670000
GPATCH4   2670000 perm   3399 sec   (785 perm/sec)   p_kst 8.644195e-04   p_cons 2.751225e-01   p_joint 5.044944e-04

Joint ci ratio: 1.066620e-01	ci left: 4.768588e-04	ci right 5.309464e-04	k: 1349	n:2680000
Cons ci ratio: 3.886425e-03	ci left: 2.746221e-01	ci right 2.756918e-01	k: 737420	n:2680000
KS ci ratio: 8.145481e-02	ci left: 8.282564e-04	ci right 8.989487e-04	k: 2313	n:2680000
GPATCH4   2680000 perm   3423 sec   (783 perm/sec)   p_kst 8.630597e-04   p_cons 2.751567e-01   p_joint 5.033582e-04

Joint ci ratio: 1.065043e-01	ci left: 4.765334e-04	ci right 5.304993e-04	k: 1353	n:2690000
Cons ci ratio: 3.879326e-03	ci left: 2.746095e-01	ci right 2.756772e-01	k: 740135	n:2690000
KS ci ratio: 8.133191e-02	ci left: 8.277266e-04	ci right 8.982621e-04	k: 2320	n:2690000
GPATCH4   2690000 perm   3445 sec   (781 perm/sec)   p_kst 8.624535e-04   p_cons 2.751431e-01   p_joint 5.029740e-04

Joint ci ratio: 1.063866e-01	ci left: 4.758500e-04	ci right 5.296752e-04	k: 1356	n:2700000
Cons ci ratio: 3.871972e-03	ci left: 2.746274e-01	ci right 2.756931e-01	k: 742932	n:2700000
KS ci ratio: 8.122703e-02	ci left: 8.268380e-04	ci right 8.972026e-04	k: 2326	n:2700000
GPATCH4   2700000 perm   3468 sec   (779 perm/sec)   p_kst 8.614815e-04   p_cons 2.751600e-01   p_joint 5.022222e-04

Joint ci ratio: 1.060743e-01	ci left: 4.769677e-04	ci right 5.307511e-04	k: 1364	n:2710000
Cons ci ratio: 3.864691e-03	ci left: 2.746418e-01	ci right 2.757056e-01	k: 745720	n:2710000
KS ci ratio: 8.108777e-02	ci left: 8.266791e-04	ci right 8.969038e-04	k: 2334	n:2710000
GPATCH4   2710000 perm   3491 sec   (776 perm/sec)   p_kst 8.612546e-04   p_cons 2.751734e-01   p_joint 5.033210e-04

Joint ci ratio: 1.058806e-01	ci left: 4.770036e-04	ci right 5.306867e-04	k: 1369	n:2720000
Cons ci ratio: 3.857452e-03	ci left: 2.746561e-01	ci right 2.757179e-01	k: 748508	n:2720000
KS ci ratio: 8.093194e-02	ci left: 8.268816e-04	ci right 8.969822e-04	k: 2343	n:2720000
GPATCH4   2720000 perm   3514 sec   (774 perm/sec)   p_kst 8.613971e-04   p_cons 2.751868e-01   p_joint 5.033088e-04

Joint ci ratio: 1.056111e-01	ci left: 4.777527e-04	ci right 5.313747e-04	k: 1376	n:2730000
Cons ci ratio: 3.850305e-03	ci left: 2.746648e-01	ci right 2.757247e-01	k: 751281	n:2730000
KS ci ratio: 8.075984e-02	ci left: 8.274417e-04	ci right 8.974336e-04	k: 2353	n:2730000
GPATCH4   2730000 perm   3537 sec   (772 perm/sec)   p_kst 8.619048e-04   p_cons 2.751945e-01   p_joint 5.040293e-04

Joint ci ratio: 1.053056e-01	ci left: 4.788518e-04	ci right 5.324320e-04	k: 1384	n:2740000
Cons ci ratio: 3.843209e-03	ci left: 2.746723e-01	ci right 2.757303e-01	k: 754051	n:2740000
KS ci ratio: 8.058882e-02	ci left: 8.279978e-04	ci right 8.978815e-04	k: 2363	n:2740000
GPATCH4   2740000 perm   3561 sec   (769 perm/sec)   p_kst 8.624088e-04   p_cons 2.752011e-01   p_joint 5.051095e-04

Joint ci ratio: 1.050027e-01	ci left: 4.799431e-04	ci right 5.334815e-04	k: 1392	n:2750000
Cons ci ratio: 3.836016e-03	ci left: 2.746940e-01	ci right 2.757501e-01	k: 756860	n:2750000
KS ci ratio: 8.036809e-02	ci left: 8.296191e-04	ci right 8.994388e-04	k: 2376	n:2750000
GPATCH4   2750000 perm   3584 sec   (767 perm/sec)   p_kst 8.640000e-04   p_cons 2.752218e-01   p_joint 5.061818e-04

Joint ci ratio: 1.047398e-01	ci left: 4.806739e-04	ci right 5.341513e-04	k: 1399	n:2760000
Cons ci ratio: 3.829340e-03	ci left: 2.746659e-01	ci right 2.757201e-01	k: 759532	n:2760000
KS ci ratio: 8.018274e-02	ci left: 8.305188e-04	ci right 9.002455e-04	k: 2387	n:2760000
GPATCH4   2760000 perm   3607 sec   (765 perm/sec)   p_kst 8.648551e-04   p_cons 2.751928e-01   p_joint 5.068841e-04

Joint ci ratio: 1.043676e-01	ci left: 4.824543e-04	ci right 5.359274e-04	k: 1409	n:2770000
Cons ci ratio: 3.822494e-03	ci left: 2.746593e-01	ci right 2.757116e-01	k: 762263	n:2770000
KS ci ratio: 7.996531e-02	ci left: 8.321197e-04	ci right 9.017825e-04	k: 2400	n:2770000
GPATCH4   2770000 perm   3632 sec   (763 perm/sec)   p_kst 8.664260e-04   p_cons 2.751852e-01   p_joint 5.086643e-04

Joint ci ratio: 1.042199e-01	ci left: 4.821202e-04	ci right 5.354760e-04	k: 1413	n:2780000
Cons ci ratio: 3.815942e-03	ci left: 2.746258e-01	ci right 2.756761e-01	k: 764919	n:2780000
KS ci ratio: 7.979928e-02	ci left: 8.326517e-04	ci right 9.022077e-04	k: 2410	n:2780000
GPATCH4   2780000 perm   3655 sec   (761 perm/sec)   p_kst 8.669065e-04   p_cons 2.751507e-01   p_joint 5.082734e-04

Joint ci ratio: 1.041096e-01	ci left: 4.814394e-04	ci right 5.346600e-04	k: 1416	n:2790000
Cons ci ratio: 3.809103e-03	ci left: 2.746262e-01	ci right 2.756746e-01	k: 767669	n:2790000
KS ci ratio: 7.968371e-02	ci left: 8.321262e-04	ci right 9.015329e-04	k: 2417	n:2790000
GPATCH4   2790000 perm   3679 sec   (758 perm/sec)   p_kst 8.663082e-04   p_cons 2.751502e-01   p_joint 5.075269e-04

Joint ci ratio: 1.037805e-01	ci left: 4.828507e-04	ci right 5.360483e-04	k: 1425	n:2800000
Cons ci ratio: 3.802147e-03	ci left: 2.746427e-01	ci right 2.756892e-01	k: 770464	n:2800000
KS ci ratio: 7.955223e-02	ci left: 8.319546e-04	ci right 9.012272e-04	k: 2425	n:2800000
GPATCH4   2800000 perm   3702 sec   (756 perm/sec)   p_kst 8.660714e-04   p_cons 2.751657e-01   p_joint 5.089286e-04

Joint ci ratio: 1.036352e-01	ci left: 4.825190e-04	ci right 5.356010e-04	k: 1429	n:2810000
Cons ci ratio: 3.795134e-03	ci left: 2.746690e-01	ci right 2.757137e-01	k: 773287	n:2810000
KS ci ratio: 7.933988e-02	ci left: 8.335284e-04	ci right 9.027382e-04	k: 2438	n:2810000
GPATCH4   2810000 perm   3729 sec   (754 perm/sec)   p_kst 8.676157e-04   p_cons 2.751911e-01   p_joint 5.085409e-04

Joint ci ratio: 1.034906e-01	ci left: 4.821896e-04	ci right 5.351569e-04	k: 1433	n:2820000
Cons ci ratio: 3.788381e-03	ci left: 2.746717e-01	ci right 2.757146e-01	k: 776044	n:2820000
KS ci ratio: 7.924251e-02	ci left: 8.326581e-04	ci right 9.017068e-04	k: 2444	n:2820000
GPATCH4   2820000 perm   3752 sec   (752 perm/sec)   p_kst 8.666667e-04   p_cons 2.751929e-01   p_joint 5.081560e-04

Joint ci ratio: 1.033466e-01	ci left: 4.818626e-04	ci right 5.347159e-04	k: 1437	n:2830000
Cons ci ratio: 3.781551e-03	ci left: 2.746864e-01	ci right 2.757275e-01	k: 778835	n:2830000
KS ci ratio: 7.916166e-02	ci left: 8.314476e-04	ci right 9.003224e-04	k: 2449	n:2830000
GPATCH4   2830000 perm   3777 sec   (749 perm/sec)   p_kst 8.653710e-04   p_cons 2.752067e-01   p_joint 5.077739e-04

Joint ci ratio: 1.031674e-01	ci left: 4.818810e-04	ci right 5.346391e-04	k: 1442	n:2840000
Cons ci ratio: 3.774891e-03	ci left: 2.746870e-01	ci right 2.757262e-01	k: 781586	n:2840000
KS ci ratio: 7.898451e-02	ci left: 8.323166e-04	ci right 9.011020e-04	k: 2460	n:2840000
GPATCH4   2840000 perm   3801 sec   (747 perm/sec)   p_kst 8.661972e-04   p_cons 2.752063e-01   p_joint 5.077465e-04

Joint ci ratio: 1.029536e-01	ci left: 4.822412e-04	ci right 5.349227e-04	k: 1448	n:2850000
Cons ci ratio: 3.768373e-03	ci left: 2.746763e-01	ci right 2.757136e-01	k: 784305	n:2850000
KS ci ratio: 7.885645e-02	ci left: 8.321478e-04	ci right 9.008027e-04	k: 2468	n:2850000
GPATCH4   2850000 perm   3825 sec   (745 perm/sec)   p_kst 8.659649e-04   p_cons 2.751947e-01   p_joint 5.080702e-04

Joint ci ratio: 1.028826e-01	ci left: 4.812363e-04	ci right 5.337696e-04	k: 1450	n:2860000
Cons ci ratio: 3.761805e-03	ci left: 2.746744e-01	ci right 2.757100e-01	k: 787049	n:2860000
KS ci ratio: 7.872902e-02	ci left: 8.319803e-04	ci right 9.005053e-04	k: 2476	n:2860000
GPATCH4   2860000 perm   3851 sec   (743 perm/sec)   p_kst 8.657343e-04   p_cons 2.751920e-01   p_joint 5.069930e-04

Joint ci ratio: 1.027765e-01	ci left: 4.805780e-04	ci right 5.329820e-04	k: 1453	n:2870000
Cons ci ratio: 3.755272e-03	ci left: 2.746726e-01	ci right 2.757063e-01	k: 789793	n:2870000
KS ci ratio: 7.868146e-02	ci left: 8.301061e-04	ci right 8.984336e-04	k: 2479	n:2870000
GPATCH4   2870000 perm   3876 sec   (741 perm/sec)   p_kst 8.637631e-04   p_cons 2.751892e-01   p_joint 5.062718e-04

Joint ci ratio: 1.025651e-01	ci left: 4.809391e-04	ci right 5.332681e-04	k: 1459	n:2880000
Cons ci ratio: 3.748485e-03	ci left: 2.747013e-01	ci right 2.757332e-01	k: 792625	n:2880000
KS ci ratio: 7.857068e-02	ci left: 8.296066e-04	ci right 8.977924e-04	k: 2486	n:2880000
GPATCH4   2880000 perm   3900 sec   (738 perm/sec)   p_kst 8.631944e-04   p_cons 2.752170e-01   p_joint 5.065972e-04

Joint ci ratio: 1.023899e-01	ci left: 4.809607e-04	ci right 5.331973e-04	k: 1464	n:2890000
Cons ci ratio: 3.741927e-03	ci left: 2.747093e-01	ci right 2.757395e-01	k: 795398	n:2890000
KS ci ratio: 7.847611e-02	ci left: 8.287713e-04	ci right 8.968027e-04	k: 2492	n:2890000
GPATCH4   2890000 perm   3924 sec   (736 perm/sec)   p_kst 8.622837e-04   p_cons 2.752242e-01   p_joint 5.065744e-04

Joint ci ratio: 1.022504e-01	ci left: 4.806463e-04	ci right 5.327733e-04	k: 1468	n:2900000
Cons ci ratio: 3.735506e-03	ci left: 2.747064e-01	ci right 2.757348e-01	k: 798139	n:2900000
KS ci ratio: 7.839758e-02	ci left: 8.276038e-04	ci right 8.954683e-04	k: 2497	n:2900000
GPATCH4   2900000 perm   3948 sec   (735 perm/sec)   p_kst 8.610345e-04   p_cons 2.752203e-01   p_joint 5.062069e-04

Joint ci ratio: 1.019041e-01	ci left: 4.823433e-04	ci right 5.344666e-04	k: 1478	n:2910000
Cons ci ratio: 3.728912e-03	ci left: 2.747254e-01	ci right 2.757520e-01	k: 800944	n:2910000
KS ci ratio: 7.819432e-02	ci left: 8.291397e-04	ci right 8.969458e-04	k: 2510	n:2910000
GPATCH4   2910000 perm   3973 sec   (732 perm/sec)   p_kst 8.625430e-04   p_cons 2.752385e-01   p_joint 5.079038e-04

Joint ci ratio: 1.018353e-01	ci left: 4.813589e-04	ci right 5.333386e-04	k: 1480	n:2920000
Cons ci ratio: 3.722481e-03	ci left: 2.747306e-01	ci right 2.757555e-01	k: 803709	n:2920000
KS ci ratio: 7.807006e-02	ci left: 8.289864e-04	ci right 8.966673e-04	k: 2518	n:2920000
GPATCH4   2920000 perm   3998 sec   (730 perm/sec)   p_kst 8.623288e-04   p_cons 2.752428e-01   p_joint 5.068493e-04

Joint ci ratio: 1.015272e-01	ci left: 4.827096e-04	ci right 5.346681e-04	k: 1489	n:2930000
Cons ci ratio: 3.716185e-03	ci left: 2.747248e-01	ci right 2.757480e-01	k: 806442	n:2930000
KS ci ratio: 7.799274e-02	ci left: 8.278302e-04	ci right 8.953468e-04	k: 2523	n:2930000
GPATCH4   2930000 perm   4022 sec   (729 perm/sec)   p_kst 8.610922e-04   p_cons 2.752362e-01   p_joint 5.081911e-04

Joint ci ratio: 1.013573e-01	ci left: 4.827253e-04	ci right 5.345933e-04	k: 1494	n:2940000
Cons ci ratio: 3.709779e-03	ci left: 2.747344e-01	ci right 2.757558e-01	k: 809220	n:2940000
KS ci ratio: 7.788483e-02	ci left: 8.273490e-04	ci right 8.947288e-04	k: 2530	n:2940000
GPATCH4   2940000 perm   4046 sec   (727 perm/sec)   p_kst 8.605442e-04   p_cons 2.752449e-01   p_joint 5.081633e-04

Joint ci ratio: 1.011208e-01	ci left: 4.834017e-04	ci right 5.352141e-04	k: 1501	n:2950000
Cons ci ratio: 3.703698e-03	ci left: 2.747124e-01	ci right 2.757321e-01	k: 811905	n:2950000
KS ci ratio: 7.771610e-02	ci left: 8.282007e-04	ci right 8.954971e-04	k: 2541	n:2950000
GPATCH4   2950000 perm   4071 sec   (725 perm/sec)   p_kst 8.613559e-04   p_cons 2.752220e-01   p_joint 5.088136e-04

Joint ci ratio: 1.008859e-01	ci left: 4.840737e-04	ci right 5.358305e-04	k: 1508	n:2960000
Cons ci ratio: 3.697290e-03	ci left: 2.747291e-01	ci right 2.757470e-01	k: 814704	n:2960000
KS ci ratio: 7.757889e-02	ci left: 8.283843e-04	ci right 8.955714e-04	k: 2550	n:2960000
GPATCH4   2960000 perm   4096 sec   (723 perm/sec)   p_kst 8.614865e-04   p_cons 2.752378e-01   p_joint 5.094595e-04

Joint ci ratio: 1.006527e-01	ci left: 4.847414e-04	ci right 5.364426e-04	k: 1515	n:2970000
Cons ci ratio: 3.691077e-03	ci left: 2.747281e-01	ci right 2.757444e-01	k: 817451	n:2970000
KS ci ratio: 7.745754e-02	ci left: 8.282365e-04	ci right 8.953018e-04	k: 2558	n:2970000
GPATCH4   2970000 perm   4121 sec   (721 perm/sec)   p_kst 8.612795e-04   p_cons 2.752360e-01   p_joint 5.101010e-04

Joint ci ratio: 1.004541e-01	ci left: 4.850775e-04	ci right 5.367065e-04	k: 1521	n:2980000
Cons ci ratio: 3.684647e-03	ci left: 2.747540e-01	ci right 2.757686e-01	k: 820278	n:2980000
KS ci ratio: 7.735183e-02	ci left: 8.277607e-04	ci right 8.946919e-04	k: 2565	n:2980000
GPATCH4   2980000 perm   4146 sec   (719 perm/sec)   p_kst 8.607383e-04   p_cons 2.752611e-01   p_joint 5.104027e-04

Joint ci ratio: 1.002239e-01	ci left: 4.857376e-04	ci right 5.373114e-04	k: 1528	n:2990000
Cons ci ratio: 3.678649e-03	ci left: 2.747366e-01	ci right 2.757494e-01	k: 822976	n:2990000
KS ci ratio: 7.723154e-02	ci left: 8.276161e-04	ci right 8.944269e-04	k: 2573	n:2990000
GPATCH4   2990000 perm   4170 sec   (717 perm/sec)   p_kst 8.605351e-04   p_cons 2.752428e-01   p_joint 5.110368e-04

Joint ci ratio: 9.989765e-02	ci left: 4.873684e-04	ci right 5.389370e-04	k: 1538	n:3000000
Cons ci ratio: 3.672487e-03	ci left: 2.747403e-01	ci right 2.757515e-01	k: 825737	n:3000000
KS ci ratio: 7.705210e-02	ci left: 8.287803e-04	ci right 8.955226e-04	k: 2585	n:3000000
GPATCH4   3000000 perm   4195 sec   (715 perm/sec)   p_kst 8.616667e-04   p_cons 2.752457e-01   p_joint 5.126667e-04

Outputting figure to mutsig2_images.part000000000072/GPATCH4.2_1176_3000000_0.00086167_0.27525_0.00051267.png
                gene_name: GPATCH4
               theta_stop: 0.100 
                    nperm: 3000000 
                     p_ks: 0.00086 
        ci_ks_bounds_left: 0.00083 
       ci_ks_bounds_right: 0.00090 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.00051 
     ci_joint_bounds_left: 0.00049 
    ci_joint_bounds_right: 0.00054 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000072
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 72 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1709>
Subject: Job 9877219: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1709>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000073> was used as the working directory.
Started at Fri Oct  5 22:41:34 2012
Results reported at Fri Oct  5 22:44:05 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000073.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000073.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 73  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000073.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    138.50 sec.
    Max Memory :      1928 MB
    Max Swap   :      4639 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
73
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 73
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 73: processing genes 6529 - 6619
Calculating significance of each gene.
Using projection method.
6529	GPBP1	1
6530	GPBP1L1	1
6531	GPC1	1
6532	GPC2	1
6533	GPC3	1
6534	GPC4	1
6535	GPC5	1
6536	GPC6	1
6537	GPCPD1	1
6538	GPD1	1
6539	GPD1L	1
6540	GPD2	1
6541	GPER	1
6542	GPHA2	1
6543	GPHB5	1
6544	GPHN	1
6545	GPI	1
6546	GPIHBP1	1
6547	GPKOW	1
6548	GPLD1	1
6549	GPM6A	1.437995e-02
6550	GPM6B	1
6551	GPN1	1
6552	GPN2	1
6553	GPN3	1
6554	GPNMB	1
6555	GPR1	1
6556	GPR101	1
6557	GPR107	1
6558	GPR108	1
6559	GPR109A	1
6560	GPR109B	1
6561	GPR110	1
6562	GPR111	1
6563	GPR112	1.077582e-01
6564	GPR113	1
6565	GPR114	1
6566	GPR115	1
6567	GPR116	1
6568	GPR119	1
6569	GPR12	1
6570	GPR120	1
6571	GPR123	1.285043e-01
6572	GPR124	1
6573	GPR125	1
6574	GPR126	1
6575	GPR128	1.152618e-01
6576	GPR132	1
6577	GPR133	1.946789e-02
6578	GPR135	1.535372e-02
6579	GPR137	1
6580	GPR137B	1
6581	GPR137C	1
6582	GPR139	1
6583	GPR141	8.042659e-02
6584	GPR142	1
6585	GPR143	1
6586	GPR146	1
6587	GPR148	1
6588	GPR149	1
6589	GPR15	1
6590	GPR150	1
6591	GPR151	1
6592	GPR152	1
6593	GPR153	1
6594	GPR155	1
6595	GPR156	1
6596	GPR157	1
6597	GPR158	1
6598	GPR160	1
6599	GPR161	1
6600	GPR162	1
6601	GPR17	1
6602	GPR171	1
6603	GPR172A	1
6604	GPR172B	1
6605	GPR173	1
6606	GPR174	6.934194e-02
6607	GPR176	1
6608	GPR179	5.469221e-01
6609	GPR18	1
6610	GPR180	1
6611	GPR182	1
6612	GPR183	9.816636e-02
6613	GPR19	1
6614	GPR20	1
6615	GPR21	1
6616	GPR22	1
6617	GPR25	1
6618	GPR26	1
6619	GPR27	7.759624e-02
Done

Running MutSig 2:
Scatter job 73: processing genes 6529 - 6619
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
GPR112
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.386300e-02	ci left: 5.628341e-01	ci right 5.823236e-01	k: 5726	n:10000
Cons ci ratio: 5.497778e-03	ci left: 9.779161e-01	ci right 9.833989e-01	k: 9808	n:10000
KS ci ratio: 2.663449e-01	ci left: 1.837333e-02	ci right 2.411031e-02	k: 211	n:10000
GPR112   10000 perm   4 sec   (2661 perm/sec)   p_kst 2.110000e-02   p_cons 9.808000e-01   p_joint 5.726000e-01

Joint ci ratio: 3.069101e-02	ci left: 4.422891e-01	ci right 4.561256e-01	k: 8984	n:20000
Cons ci ratio: 3.550898e-03	ci left: 9.820586e-01	ci right 9.855987e-01	k: 19678	n:20000
KS ci ratio: 1.960353e-01	ci left: 1.767633e-02	ci right 2.156510e-02	k: 391	n:20000
GPR112   20000 perm   10 sec   (2044 perm/sec)   p_kst 1.955000e-02   p_cons 9.839000e-01   p_joint 4.492000e-01

Joint ci ratio: 2.473988e-02	ci left: 4.499190e-01	ci right 4.612230e-01	k: 13667	n:30000
Cons ci ratio: 3.346518e-03	ci left: 9.769332e-01	ci right 9.802398e-01	k: 29359	n:30000
KS ci ratio: 1.589639e-01	ci left: 1.828556e-02	ci right 2.147505e-02	k: 595	n:30000
GPR112   30000 perm   13 sec   (2297 perm/sec)   p_kst 1.983333e-02   p_cons 9.786333e-01   p_joint 4.555667e-01

Joint ci ratio: 1.738534e-02	ci left: 5.547684e-01	ci right 5.645229e-01	k: 22386	n:40000
Cons ci ratio: 2.908593e-03	ci left: 9.770051e-01	ci right 9.798749e-01	k: 39139	n:40000
KS ci ratio: 1.373737e-01	ci left: 1.857798e-02	ci right 2.134233e-02	k: 797	n:40000
GPR112   40000 perm   16 sec   (2465 perm/sec)   p_kst 1.992500e-02   p_cons 9.784750e-01   p_joint 5.596500e-01

Joint ci ratio: 1.236268e-02	ci left: 6.637121e-01	ci right 6.719884e-01	k: 33393	n:50000
Cons ci ratio: 2.615711e-03	ci left: 9.769230e-01	ci right 9.795010e-01	k: 48912	n:50000
KS ci ratio: 1.211173e-01	ci left: 1.927584e-02	ci right 2.178026e-02	k: 1025	n:50000
GPR112   50000 perm   19 sec   (2575 perm/sec)   p_kst 2.050000e-02   p_cons 9.782400e-01   p_joint 6.678600e-01

Joint ci ratio: 1.269124e-02	ci left: 6.099907e-01	ci right 6.177983e-01	k: 36834	n:60000
Cons ci ratio: 2.142958e-03	ci left: 9.813159e-01	ci right 9.834371e-01	k: 58944	n:60000
KS ci ratio: 1.108499e-01	ci left: 1.928378e-02	ci right 2.156294e-02	k: 1224	n:60000
GPR112   60000 perm   23 sec   (2627 perm/sec)   p_kst 2.040000e-02   p_cons 9.824000e-01   p_joint 6.139000e-01

Joint ci ratio: 9.298748e-03	ci left: 7.140627e-01	ci right 7.207478e-01	k: 50219	n:70000
Cons ci ratio: 1.969077e-03	ci left: 9.816627e-01	ci right 9.836113e-01	k: 68786	n:70000
KS ci ratio: 1.025966e-01	ci left: 1.937948e-02	ci right 2.148911e-02	k: 1429	n:70000
GPR112   70000 perm   26 sec   (2669 perm/sec)   p_kst 2.041429e-02   p_cons 9.826571e-01   p_joint 7.174143e-01

Joint ci ratio: 1.046693e-02	ci left: 6.334438e-01	ci right 6.401213e-01	k: 50943	n:80000
Cons ci ratio: 1.844224e-03	ci left: 9.816828e-01	ci right 9.835070e-01	k: 78609	n:80000
KS ci ratio: 9.591911e-02	ci left: 1.946820e-02	ci right 2.144179e-02	k: 1635	n:80000
GPR112   80000 perm   30 sec   (2679 perm/sec)   p_kst 2.043750e-02   p_cons 9.826125e-01   p_joint 6.367875e-01

Outputting figure to mutsig2_images.part000000000073/GPR112.2_9335_80000_0.020438_0.98261_0.63679.png
                gene_name: GPR112
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.64 

Current progress: 50 percent done.
GPR133
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.538644e-02	ci left: 6.954487e-01	ci right 7.134321e-01	k: 7045	n:10000
KS ci ratio: 1.714820e-02	ci left: 8.320551e-01	ci right 8.465466e-01	k: 8394	n:10000
GPR133   10000 perm   2 sec   (5738 perm/sec)   p_kst 8.394000e-01   p_cons 7.045000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPR133.2_2725_10000_0.8394_0.7045_1.png
                gene_name: GPR133
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000073
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 73 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1533>
Subject: Job 9877228: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1533>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000074> was used as the working directory.
Started at Fri Oct  5 22:42:32 2012
Results reported at Fri Oct  5 22:44:44 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000074.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000074.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 74  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000074.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    158.08 sec.
    Max Memory :      2147 MB
    Max Swap   :      4699 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
74
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 74
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 74: processing genes 6620 - 6710
Calculating significance of each gene.
Using projection method.
6620	GPR3	1
6621	GPR31	1
6622	GPR32	5.592236e-02
6623	GPR34	1
6624	GPR35	1
6625	GPR37	1
6626	GPR37L1	2.952366e-03
6627	GPR39	1
6628	GPR4	1
6629	GPR44	1
6630	GPR45	1
6631	GPR50	1.453038e-01
6632	GPR52	1
6633	GPR55	1
6634	GPR56	1
6635	GPR6	1
6636	GPR61	1
6637	GPR62	1
6638	GPR63	1
6639	GPR64	1.314123e-01
6640	GPR65	1
6641	GPR68	1
6642	GPR75	1.574501e-01
6643	GPR77	1
6644	GPR78	9.040946e-02
6645	GPR81	1
6646	GPR82	1
6647	GPR83	1
6648	GPR84	1
6649	GPR85	1
6650	GPR87	1
6651	GPR88	1
6652	GPR89A	1
6653	GPR89B	1
6654	GPR97	1
6655	GPR98	1
6656	GPRASP1	1
6657	GPRASP2	1
6658	GPRC5A	1
6659	GPRC5B	1
6660	GPRC5C	1
6661	GPRC5D	1
6662	GPRC6A	1
6663	GPRIN1	1
6664	GPRIN2	5.875581e-02
6665	GPRIN3	2.580625e-02
6666	GPS1	1
6667	GPS2	1
6668	GPSM1	1
6669	GPSM2	1
6670	GPSM3	1
6671	GPT	1
6672	GPT2	1
6673	GPX1	1
6674	GPX2	1
6675	GPX3	1
6676	GPX4	1
6677	GPX5	1
6678	GPX6	1
6679	GPX7	1
6680	GPX8	1
6681	GRAMD1A	1
6682	GRAMD1B	1
6683	GRAMD1C	1
6684	GRAMD2	1
6685	GRAMD3	1
6686	GRAMD4	1
6687	GRAP	1
6688	GRAP2	1
6689	GRASP	1
6690	GRB10	1
6691	GRB14	1
6692	GRB2	1
6693	GRB7	1.518645e-01
6694	GREB1	1
6695	GREM1	1
6696	GREM2	1
6697	GRHL1	1
6698	GRHL2	2.194484e-01
6699	GRHL3	7.537748e-02
6700	GRHPR	1
6701	GRIA1	1.524069e-01
6702	GRIA2	1
6703	GRIA3	1
6704	GRIA4	7.112776e-02
6705	GRID1	1.508201e-01
6706	GRID2	2.475080e-04
6707	GRIK1	2.485293e-01
6708	GRIK2	1
6709	GRIK3	1.168448e-01
6710	GRIK4	1.360877e-01
Done

Running MutSig 2:
Scatter job 74: processing genes 6620 - 6710
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
GRID2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.641121e-02	ci left: 8.437668e-01	ci right 8.578282e-01	k: 8509	n:10000
KS ci ratio: 2.505766e-02	ci left: 7.008953e-01	ci right 7.187823e-01	k: 7099	n:10000
GRID2   10000 perm   2 sec   (4807 perm/sec)   p_kst 7.099000e-01   p_cons 8.509000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GRID2.4_3087_10000_0.7099_0.8509_1.png
                gene_name: GRID2
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
GPR37L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.173814e-02	ci left: 3.551569e-01	ci right 3.741220e-01	k: 3646	n:10000
Cons ci ratio: 1.203560e-01	ci left: 9.009981e-02	ci right 1.017368e-01	k: 958	n:10000
KS ci ratio: 3.935905e-02	ci left: 4.880521e-01	ci right 5.077491e-01	k: 4979	n:10000
GPR37L1   10000 perm   2 sec   (6371 perm/sec)   p_kst 4.979000e-01   p_cons 9.580000e-02   p_joint 3.646000e-01

Joint ci ratio: 4.448699e-02	ci left: 2.733874e-01	ci right 2.858767e-01	k: 5592	n:20000
Cons ci ratio: 8.493493e-02	ci left: 9.214736e-02	ci right 1.003705e-01	k: 1924	n:20000
KS ci ratio: 2.761416e-02	ci left: 4.948957e-01	ci right 5.088038e-01	k: 10037	n:20000
GPR37L1   20000 perm   4 sec   (5597 perm/sec)   p_kst 5.018500e-01   p_cons 9.620000e-02   p_joint 2.796000e-01

Outputting figure to mutsig2_images.part000000000074/GPR37L1.2_1454_20000_0.50185_0.0962_0.2796.png
                gene_name: GPR37L1
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.096 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 67 percent done.
GPRIN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.372437e-02	ci left: 7.231012e-01	ci right 7.405635e-01	k: 7319	n:10000
Cons ci ratio: 8.654491e-03	ci left: 9.492931e-01	ci right 9.576401e-01	k: 9536	n:10000
KS ci ratio: 1.905474e-01	ci left: 3.672071e-02	ci right 4.454977e-02	k: 405	n:10000
GPRIN3   10000 perm   2 sec   (5981 perm/sec)   p_kst 4.050000e-02   p_cons 9.536000e-01   p_joint 7.319000e-01

Joint ci ratio: 2.159811e-02	ci left: 6.154382e-01	ci right 6.289262e-01	k: 12444	n:20000
Cons ci ratio: 6.287679e-03	ci left: 9.480199e-01	ci right 9.540481e-01	k: 19022	n:20000
KS ci ratio: 1.343100e-01	ci left: 3.810025e-02	ci right 4.363424e-02	k: 816	n:20000
GPRIN3   20000 perm   4 sec   (5305 perm/sec)   p_kst 4.080000e-02   p_cons 9.511000e-01   p_joint 6.222000e-01

Joint ci ratio: 1.420796e-02	ci left: 7.121668e-01	ci right 7.223911e-01	k: 21519	n:30000
Cons ci ratio: 5.166172e-03	ci left: 9.479848e-01	ci right 9.529275e-01	k: 28515	n:30000
KS ci ratio: 1.094551e-01	ci left: 3.875160e-02	ci right 4.327117e-02	k: 1229	n:30000
GPRIN3   30000 perm   6 sec   (5023 perm/sec)   p_kst 4.096667e-02   p_cons 9.505000e-01   p_joint 7.173000e-01

Joint ci ratio: 1.255666e-02	ci left: 7.045211e-01	ci right 7.134485e-01	k: 28360	n:40000
Cons ci ratio: 4.479672e-03	ci left: 9.482014e-01	ci right 9.524830e-01	k: 38015	n:40000
KS ci ratio: 9.491206e-02	ci left: 3.895552e-02	ci right 4.286148e-02	k: 1635	n:40000
GPRIN3   40000 perm   8 sec   (4863 perm/sec)   p_kst 4.087500e-02   p_cons 9.503750e-01   p_joint 7.090000e-01

Outputting figure to mutsig2_images.part000000000074/GPRIN3.2_2335_40000_0.040875_0.95037_0.709.png
                gene_name: GPRIN3
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000074
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 74 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1640>
Subject: Job 9877232: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1640>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000075> was used as the working directory.
Started at Fri Oct  5 22:42:32 2012
Results reported at Fri Oct  5 22:44:34 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000075.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000075.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 75  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000075.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    127.40 sec.
    Max Memory :      2011 MB
    Max Swap   :      4653 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
75
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 75
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 75: processing genes 6711 - 6800
Calculating significance of each gene.
Using projection method.
6711	GRIK5	1
6712	GRIN1	1
6713	GRIN2A	7.367670e-02
6714	GRIN2B	1
6715	GRIN2C	1
6716	GRIN2D	1
6717	GRIN3A	1
6718	GRIN3B	7.737328e-02
6719	GRINA	1
6720	GRINL1A	1
6721	GRIP1	7.434607e-02
6722	GRIP2	1
6723	GRIPAP1	1
6724	GRK1	9.926847e-02
6725	GRK4	1
6726	GRK5	1
6727	GRK6	2.073766e-02
6728	GRK7	8.081761e-02
6729	GRLF1	3.672985e-01
6730	GRM1	1.022334e-01
6731	GRM2	1
6732	GRM3	2.699891e-01
6733	GRM4	7.634091e-02
6734	GRM5	1.829465e-02
6735	GRM6	1
6736	GRM7	2.529080e-02
6737	GRM8	1
6738	GRN	1
6739	GRP	1
6740	GRPEL1	1
6741	GRPEL2	1
6742	GRPR	1
6743	GRSF1	1
6744	GRTP1	1
6745	GRWD1	1
6746	GRXCR1	3.814768e-02
6747	GRXCR2	1
6748	GSC	1
6749	GSC2	1
6750	GSDMA	1
6751	GSDMB	1
6752	GSDMC	1
6753	GSDMD	8.110105e-02
6754	GSG1	1
6755	GSG1L	8.515462e-02
6756	GSG2	1.418556e-01
6757	GSK3A	2.805868e-02
6758	GSK3B	1
6759	GSN	1
6760	GSPT1	1
6761	GSPT2	1
6762	GSR	1
6763	GSS	1
6764	GSTA1	1
6765	GSTA2	5.315073e-02
6766	GSTA3	1
6767	GSTA4	1
6768	GSTA5	1
6769	GSTCD	1
6770	GSTK1	1
6771	GSTM1	1
6772	GSTM2	7.461237e-02
6773	GSTM3	1
6774	GSTM4	1
6775	GSTM5	1
6776	GSTO1	1
6777	GSTO2	1
6778	GSTP1	1
6779	GSTT1	1
6780	GSTZ1	1
6781	GSX1	1
6782	GSX2	1
6783	GTDC1	1
6784	GTF2A1	1
6785	GTF2A1L	1
6786	GTF2A2	1
6787	GTF2B	1
6788	GTF2E1	1
6789	GTF2E2	1
6790	GTF2F1	1
6791	GTF2F2	1
6792	GTF2H1	1
6793	GTF2H2C	1
6794	GTF2H2D	1
6795	GTF2H3	1
6796	GTF2H4	1
6797	GTF2H5	1
6798	GTF2I	1
6799	GTF2IRD1	1
6800	GTF2IRD2	1
Done

Running MutSig 2:
Scatter job 75: processing genes 6711 - 6800
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
GRIN2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.481309e-02	ci left: 2.072778e-01	ci right 2.234884e-01	k: 2153	n:10000
Cons ci ratio: 5.815626e-02	ci left: 3.032226e-01	ci right 3.214868e-01	k: 3123	n:10000
KS ci ratio: 1.105409e-01	ci left: 1.054923e-01	ci right 1.179349e-01	k: 1116	n:10000
GRIN2A   10000 perm   2 sec   (4649 perm/sec)   p_kst 1.116000e-01   p_cons 3.123000e-01   p_joint 2.153000e-01

Joint ci ratio: 2.905115e-02	ci left: 4.695570e-01	ci right 4.834499e-01	k: 9530	n:20000
Cons ci ratio: 4.157701e-02	ci left: 3.012571e-01	ci right 3.140989e-01	k: 6153	n:20000
KS ci ratio: 7.826432e-02	ci left: 1.070713e-01	ci right 1.158420e-01	k: 2228	n:20000
GRIN2A   20000 perm   7 sec   (2947 perm/sec)   p_kst 1.114000e-01   p_cons 3.076500e-01   p_joint 4.765000e-01

Outputting figure to mutsig2_images.part000000000075/GRIN2A.2_4443_20000_0.1114_0.30765_0.4765.png
                gene_name: GRIN2A
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.48 

Current progress: 25 percent done.
GRK6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.791228e-01	ci left: 4.159407e-02	ci right 4.987317e-02	k: 456	n:10000
Cons ci ratio: 3.466525e-02	ci left: 5.513070e-01	ci right 5.708574e-01	k: 5611	n:10000
KS ci ratio: 2.971815e-01	ci left: 1.455775e-02	ci right 1.972903e-02	k: 170	n:10000
GRK6   10000 perm   2 sec   (6059 perm/sec)   p_kst 1.700000e-02   p_cons 5.611000e-01   p_joint 4.560000e-02

Joint ci ratio: 1.241901e-01	ci left: 4.449603e-02	ci right 5.043643e-02	k: 948	n:20000
Cons ci ratio: 2.478845e-02	ci left: 5.486808e-01	ci right 5.625030e-01	k: 11112	n:20000
KS ci ratio: 1.978447e-01	ci left: 1.734330e-02	ci right 2.119826e-02	k: 384	n:20000
GRK6   20000 perm   4 sec   (5401 perm/sec)   p_kst 1.920000e-02   p_cons 5.556000e-01   p_joint 4.740000e-02

Joint ci ratio: 1.010481e-01	ci left: 4.534800e-02	ci right 5.020672e-02	k: 1432	n:30000
Cons ci ratio: 2.028113e-02	ci left: 5.489542e-01	ci right 5.602352e-01	k: 16638	n:30000
KS ci ratio: 1.611854e-01	ci left: 1.777321e-02	ci right 2.092085e-02	k: 579	n:30000
GRK6   30000 perm   6 sec   (5094 perm/sec)   p_kst 1.930000e-02   p_cons 5.546000e-01   p_joint 4.773333e-02

Joint ci ratio: 7.161934e-02	ci left: 6.717420e-02	ci right 7.218849e-02	k: 2786	n:40000
Cons ci ratio: 1.749671e-02	ci left: 5.516150e-01	ci right 5.613768e-01	k: 22260	n:40000
KS ci ratio: 1.396219e-01	ci left: 1.797425e-02	ci right 2.069616e-02	k: 772	n:40000
GRK6   40000 perm   8 sec   (4947 perm/sec)   p_kst 1.930000e-02   p_cons 5.565000e-01   p_joint 6.965000e-02

Joint ci ratio: 8.548220e-02	ci left: 3.863213e-02	ci right 4.210150e-02	k: 2017	n:50000
Cons ci ratio: 1.561669e-02	ci left: 5.531733e-01	ci right 5.619000e-01	k: 27877	n:50000
KS ci ratio: 1.260340e-01	ci left: 1.778255e-02	ci right 2.019375e-02	k: 948	n:50000
GRK6   50000 perm   10 sec   (4821 perm/sec)   p_kst 1.896000e-02   p_cons 5.575400e-01   p_joint 4.034000e-02

Joint ci ratio: 7.733153e-02	ci left: 3.947635e-02	ci right 4.266823e-02	k: 2463	n:60000
Cons ci ratio: 1.426206e-02	ci left: 5.533479e-01	ci right 5.613132e-01	k: 33440	n:60000
KS ci ratio: 1.137266e-01	ci left: 1.831134e-02	ci right 2.053549e-02	k: 1164	n:60000
GRK6   60000 perm   13 sec   (4719 perm/sec)   p_kst 1.940000e-02   p_cons 5.573333e-01   p_joint 4.105000e-02

Joint ci ratio: 7.169492e-02	ci left: 3.948682e-02	ci right 4.243710e-02	k: 2866	n:70000
Cons ci ratio: 1.317218e-02	ci left: 5.548405e-01	ci right 5.622117e-01	k: 39097	n:70000
KS ci ratio: 1.054951e-01	ci left: 1.832148e-02	ci right 2.037578e-02	k: 1353	n:70000
GRK6   70000 perm   15 sec   (4617 perm/sec)   p_kst 1.932857e-02   p_cons 5.585286e-01   p_joint 4.094286e-02

Joint ci ratio: 9.830757e-02	ci left: 1.852863e-02	ci right 2.045644e-02	k: 1558	n:80000
Cons ci ratio: 1.184660e-02	ci left: 5.743809e-01	ci right 5.812384e-01	k: 46225	n:80000
KS ci ratio: 9.830757e-02	ci left: 1.852863e-02	ci right 2.045644e-02	k: 1558	n:80000
GRK6   80000 perm   18 sec   (4501 perm/sec)   p_kst 1.947500e-02   p_cons 5.778125e-01   p_joint 1.947500e-02

Outputting figure to mutsig2_images.part000000000075/GRK6.2_1844_80000_0.019475_0.57781_0.019475.png
                gene_name: GRK6
               theta_stop: 0.098 
                    nperm: 80000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.020 

Current progress: 50 percent done.
GRM5
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 75 percent done.
GRM7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.950885e-02	ci left: 7.935450e-01	ci right 8.092791e-01	k: 8015	n:10000
Cons ci ratio: 2.451118e-02	ci left: 7.099764e-01	ci right 7.276960e-01	k: 7189	n:10000
KS ci ratio: 1.131817e-01	ci left: 1.010066e-01	ci right 1.132234e-01	k: 1070	n:10000
GRM7   10000 perm   2 sec   (5697 perm/sec)   p_kst 1.070000e-01   p_cons 7.189000e-01   p_joint 8.015000e-01

Joint ci ratio: 1.544835e-02	ci left: 7.570436e-01	ci right 7.688799e-01	k: 15260	n:20000
Cons ci ratio: 1.722308e-02	ci left: 7.151803e-01	ci right 7.276553e-01	k: 14429	n:20000
KS ci ratio: 7.953495e-02	ci left: 1.039762e-01	ci right 1.126380e-01	k: 2165	n:20000
GRM7   20000 perm   4 sec   (5098 perm/sec)   p_kst 1.082500e-01   p_cons 7.214500e-01   p_joint 7.630000e-01

Outputting figure to mutsig2_images.part000000000075/GRM7.2_2863_20000_0.10825_0.72145_0.763.png
                gene_name: GRM7
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000075
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 75 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1647>
Subject: Job 9877242: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1647>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000076> was used as the working directory.
Started at Fri Oct  5 22:42:37 2012
Results reported at Fri Oct  5 22:44:43 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000076.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000076.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 76  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000076.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    139.49 sec.
    Max Memory :      1905 MB
    Max Swap   :      4714 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
76
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 76
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 76: processing genes 6801 - 6891
Calculating significance of each gene.
Using projection method.
6801	GTF2IRD2B	1
6802	GTF3A	1
6803	GTF3C1	5.221615e-01
6804	GTF3C2	1
6805	GTF3C3	1
6806	GTF3C4	1
6807	GTF3C5	1
6808	GTF3C6	1
6809	GTPBP1	1
6810	GTPBP10	1
6811	GTPBP2	1
6812	GTPBP3	1
6813	GTPBP4	1
6814	GTPBP5	1
6815	GTPBP8	1
6816	GTSE1	1
6817	GTSF1	1
6818	GTSF1L	1
6819	GUCA1A	1
6820	GUCA1B	1
6821	GUCA1C	1
6822	GUCA2A	1
6823	GUCA2B	1
6824	GUCY1A2	3.984916e-03
6825	GUCY1A3	1
6826	GUCY1B3	1
6827	GUCY2C	1
6828	GUCY2D	1
6829	GUCY2F	3.326825e-01
6830	GUF1	1
6831	GUK1	1
6832	GULP1	1
6833	GUSB	1
6834	GXYLT1	1
6835	GXYLT2	1
6836	GYG1	1
6837	GYG2	1
6838	GYLTL1B	1
6839	GYPA	1
6840	GYPB	1
6841	GYPC	4.614696e-02
6842	GYPE	1
6843	GYS1	1
6844	GYS2	1
6845	GZF1	1
6846	GZMA	1.369765e-02
6847	GZMB	1
6848	GZMH	8.440835e-02
6849	GZMK	1
6850	GZMM	1.644233e-02
6851	H1F0	2.855510e-02
6852	H1FNT	1
6853	H1FOO	1
6854	H1FX	1
6855	H2AFJ	1
6856	H2AFV	1.423350e-02
6857	H2AFX	1
6858	H2AFY	1
6859	H2AFY2	1
6860	H2AFZ	1
6861	H2BFWT	1
6862	H3F3A	1
6863	H3F3B	1
6864	H3F3C	1
6865	H6PD	1
6866	HAAO	1
6867	HABP2	1
6868	HABP4	1
6869	HACE1	1
6870	HACL1	1
6871	HADH	1
6872	HADHA	1
6873	HADHB	1.360268e-01
6874	HAGH	1
6875	HAGHL	1
6876	HAL	1
6877	HAMP	1
6878	HAND1	1
6879	HAND2	1
6880	HAO1	1
6881	HAO2	1
6882	HAP1	1
6883	HAPLN1	1
6884	HAPLN2	1
6885	HAPLN3	1
6886	HAPLN4	2.833888e-02
6887	HARBI1	1.120435e-01
6888	HARS	1
6889	HARS2	1
6890	HAS1	1
6891	HAS2	1
Done

Running MutSig 2:
Scatter job 76: processing genes 6801 - 6891
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
GUCY1A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.786829e-01	ci left: 1.669424e-02	ci right 2.219075e-02	k: 193	n:10000
Cons ci ratio: 1.956251e-01	ci left: 3.481398e-02	ci right 4.245779e-02	k: 385	n:10000
KS ci ratio: 3.113784e-01	ci left: 1.317075e-02	ci right 1.811726e-02	k: 155	n:10000
GUCY1A2   10000 perm   2 sec   (5485 perm/sec)   p_kst 1.550000e-02   p_cons 3.850000e-02   p_joint 1.930000e-02

Joint ci ratio: 1.045255e-01	ci left: 6.225587e-02	ci right 6.917105e-02	k: 1313	n:20000
Cons ci ratio: 1.410125e-01	ci left: 3.457132e-02	ci right 3.986432e-02	k: 743	n:20000
KS ci ratio: 2.227351e-01	ci left: 1.355014e-02	ci right 1.699289e-02	k: 304	n:20000
GUCY1A2   20000 perm   6 sec   (3273 perm/sec)   p_kst 1.520000e-02   p_cons 3.715000e-02   p_joint 6.565000e-02

Joint ci ratio: 8.902807e-02	ci left: 5.799134e-02	ci right 6.342745e-02	k: 1820	n:30000
Cons ci ratio: 1.155680e-01	ci left: 3.479506e-02	ci right 3.909522e-02	k: 1107	n:30000
KS ci ratio: 1.863617e-01	ci left: 1.317781e-02	ci right 1.591739e-02	k: 435	n:30000
GUCY1A2   30000 perm   8 sec   (3634 perm/sec)   p_kst 1.450000e-02   p_cons 3.690000e-02   p_joint 6.066667e-02

Joint ci ratio: 7.481437e-02	ci left: 6.181718e-02	ci right 6.664632e-02	k: 2568	n:40000
Cons ci ratio: 1.003087e-01	ci left: 3.492738e-02	ci right 3.864025e-02	k: 1470	n:40000
KS ci ratio: 1.608806e-01	ci left: 1.344740e-02	ci right 1.582383e-02	k: 584	n:40000
GUCY1A2   40000 perm   10 sec   (3836 perm/sec)   p_kst 1.460000e-02   p_cons 3.675000e-02   p_joint 6.420000e-02

Joint ci ratio: 6.710898e-02	ci left: 6.173224e-02	ci right 6.603856e-02	k: 3193	n:50000
Cons ci ratio: 8.931012e-02	ci left: 3.544066e-02	ci right 3.877336e-02	k: 1854	n:50000
KS ci ratio: 1.448288e-01	ci left: 1.339332e-02	ci right 1.550360e-02	k: 721	n:50000
GUCY1A2   50000 perm   13 sec   (3941 perm/sec)   p_kst 1.442000e-02   p_cons 3.708000e-02   p_joint 6.386000e-02

Joint ci ratio: 6.135431e-02	ci left: 6.174226e-02	ci right 6.566673e-02	k: 3821	n:60000
Cons ci ratio: 8.233885e-02	ci left: 3.489924e-02	ci right 3.791248e-02	k: 2183	n:60000
KS ci ratio: 1.333390e-01	ci left: 1.325240e-02	ci right 1.516168e-02	k: 851	n:60000
GUCY1A2   60000 perm   15 sec   (3973 perm/sec)   p_kst 1.418333e-02   p_cons 3.638333e-02   p_joint 6.368333e-02

Joint ci ratio: 5.931534e-02	ci left: 5.698393e-02	ci right 6.048133e-02	k: 4110	n:70000
Cons ci ratio: 7.657478e-02	ci left: 3.470220e-02	ci right 3.747929e-02	k: 2525	n:70000
KS ci ratio: 1.253156e-01	ci left: 1.292115e-02	ci right 1.466235e-02	k: 964	n:70000
GUCY1A2   70000 perm   18 sec   (3984 perm/sec)   p_kst 1.377143e-02   p_cons 3.607143e-02   p_joint 5.871429e-02

Joint ci ratio: 9.237840e-02	ci left: 2.099467e-02	ci right 2.304020e-02	k: 1760	n:80000
Cons ci ratio: 7.133310e-02	ci left: 3.507595e-02	ci right 3.768282e-02	k: 2909	n:80000
KS ci ratio: 1.167324e-01	ci left: 1.308799e-02	ci right 1.472254e-02	k: 1111	n:80000
GUCY1A2   80000 perm   20 sec   (3992 perm/sec)   p_kst 1.388750e-02   p_cons 3.636250e-02   p_joint 2.200000e-02

Joint ci ratio: 8.678501e-02	ci left: 2.120381e-02	ci right 2.313827e-02	k: 1994	n:90000
Cons ci ratio: 6.708095e-02	ci left: 3.532795e-02	ci right 3.779093e-02	k: 3289	n:90000
KS ci ratio: 1.095690e-01	ci left: 1.325336e-02	ci right 1.480042e-02	k: 1261	n:90000
GUCY1A2   90000 perm   23 sec   (3981 perm/sec)   p_kst 1.401111e-02   p_cons 3.654444e-02   p_joint 2.215556e-02

Joint ci ratio: 6.985344e-02	ci left: 2.946250e-02	ci right 3.160484e-02	k: 3052	n:100000
Cons ci ratio: 6.384333e-02	ci left: 3.516892e-02	ci right 3.749807e-02	k: 3632	n:100000
KS ci ratio: 1.041054e-01	ci left: 1.325169e-02	ci right 1.471670e-02	k: 1397	n:100000
GUCY1A2   100000 perm   25 sec   (3963 perm/sec)   p_kst 1.397000e-02   p_cons 3.632000e-02   p_joint 3.052000e-02

Joint ci ratio: 7.882023e-02	ci left: 2.112342e-02	ci right 2.286555e-02	k: 2418	n:110000
Cons ci ratio: 6.088253e-02	ci left: 3.521136e-02	ci right 3.743135e-02	k: 3994	n:110000
KS ci ratio: 9.935241e-02	ci left: 1.326077e-02	ci right 1.465594e-02	k: 1534	n:110000
GUCY1A2   110000 perm   28 sec   (3938 perm/sec)   p_kst 1.394545e-02   p_cons 3.630909e-02   p_joint 2.198182e-02

Outputting figure to mutsig2_images.part000000000076/GUCY1A2.2_2231_110000_0.013945_0.036309_0.021982.png
                gene_name: GUCY1A2
               theta_stop: 0.099 
                    nperm: 110000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.037 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.023 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000076
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 76 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 9877262: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000077> was used as the working directory.
Started at Fri Oct  5 22:42:49 2012
Results reported at Fri Oct  5 22:43:56 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000077.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000077.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 77  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000077.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     58.40 sec.
    Max Memory :      1902 MB
    Max Swap   :      4619 MB

    Max Processes  :         7
    Max Threads    :        71

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
77
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 77
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 77: processing genes 6892 - 6982
Calculating significance of each gene.
Using projection method.
6892	HAS3	1
6893	HAT1	1
6894	HAUS1	1
6895	HAUS2	1
6896	HAUS3	1
6897	HAUS4	1
6898	HAUS5	1
6899	HAUS6	1
6900	HAUS7	1
6901	HAUS8	1
6902	HAVCR1	2.433446e-02
6903	HAVCR2	1
6904	HAX1	1
6905	HBA1	1
6906	HBA2	1
6907	HBB	1
6908	HBD	1
6909	HBE1	1
6910	HBEGF	1
6911	HBG1	1
6912	HBG2	1.713661e-02
6913	HBM	1
6914	HBP1	1
6915	HBQ1	1
6916	HBS1L	1
6917	HBXIP	1
6918	HCCS	1
6919	HCFC1	1
6920	HCFC1R1	1
6921	HCFC2	1.620279e-01
6922	HCK	1
6923	HCLS1	1
6924	HCN1	2.214210e-01
6925	HCN2	1
6926	HCN3	1
6927	HCN4	2.755945e-01
6928	HCRT	1
6929	HCRTR1	1
6930	HCRTR2	4.385717e-02
6931	HCST	1
6932	HDAC1	1
6933	HDAC10	1
6934	HDAC11	1
6935	HDAC2	1
6936	HDAC3	1
6937	HDAC4	1
6938	HDAC5	1
6939	HDAC6	3.647141e-02
6940	HDAC7	1
6941	HDAC8	5.811784e-02
6942	HDAC9	1
6943	HDC	1
6944	HDDC2	1
6945	HDDC3	1
6946	HDGF	1
6947	HDGFL1	1
6948	HDGFRP2	1
6949	HDGFRP3	1
6950	HDHD1A	1
6951	HDHD2	1
6952	HDHD3	1
6953	HDLBP	1
6954	HDX	1
6955	HEATR1	1
6956	HEATR2	1.775706e-01
6957	HEATR3	1
6958	HEATR4	1
6959	HEATR5A	1
6960	HEATR5B	1
6961	HEATR6	1
6962	HEATR7B2	1
6963	HEBP1	1
6964	HEBP2	1
6965	HECA	1
6966	HECTD1	1
6967	HECTD2	1
6968	HECTD3	1
6969	HECW1	1
6970	HECW2	1
6971	HEG1	1
6972	HELB	4.935876e-02
6973	HELLS	1
6974	HELQ	1
6975	HELT	1
6976	HELZ	1
6977	HEMGN	1
6978	HEMK1	1
6979	HEPACAM	1
6980	HEPACAM2	1
6981	HEPH	1
6982	HEPHL1	4.614668e-02
Done

Running MutSig 2:
Scatter job 77: processing genes 6892 - 6982
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
HDAC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.443842e-02	ci left: 1.697609e-01	ci right 1.848276e-01	k: 1772	n:10000
Cons ci ratio: 6.533341e-02	ci left: 2.559738e-01	ci right 2.733635e-01	k: 2646	n:10000
KS ci ratio: 6.026571e-02	ci left: 2.882526e-01	ci right 3.062657e-01	k: 2972	n:10000
HDAC6   10000 perm   2 sec   (5915 perm/sec)   p_kst 2.972000e-01   p_cons 2.646000e-01   p_joint 1.772000e-01

Outputting figure to mutsig2_images.part000000000077/HDAC6.2_3760_10000_0.2972_0.2646_0.1772.png
                gene_name: HDAC6
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 33 percent done.
HELB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.713205e-02	ci left: 3.991423e-01	ci right 4.185108e-01	k: 4088	n:10000
KS ci ratio: 6.197770e-03	ci left: 9.724899e-01	ci right 9.786288e-01	k: 9757	n:10000
HELB   10000 perm   2 sec   (6379 perm/sec)   p_kst 9.757000e-01   p_cons 4.088000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000077/HELB.2_3316_10000_0.9757_0.4088_1.png
                gene_name: HELB
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
HEPHL1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000077
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 77 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1730>
Subject: Job 9877276: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1730>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000078> was used as the working directory.
Started at Fri Oct  5 22:42:55 2012
Results reported at Fri Oct  5 22:44:17 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000078.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000078.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 78  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000078.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     75.98 sec.
    Max Memory :      2035 MB
    Max Swap   :      4704 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
78
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 78
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 78: processing genes 6983 - 7072
Calculating significance of each gene.
Using projection method.
6983	HEPN1	1
6984	HERC1	7.238826e-01
6985	HERC2	2.163420e-02
6986	HERC3	1
6987	HERC4	1
6988	HERC5	6.578144e-02
6989	HERC6	1
6990	HERPUD1	5.536852e-02
6991	HERPUD2	1
6992	HES1	1
6993	HES3	1
6994	HES4	1
6995	HES5	1
6996	HES6	1
6997	HES7	1
6998	HESX1	1
6999	HEXA	1
7000/18134 In gene HEXB the following bins exceed PROBCAP:
    PRAD-CH-5766	categ 6	N = 1568    n = 1	mu =   6.58e-08
7000	HEXB	2.494006e-03
7001	HEXDC	1
7002	HEXIM1	7.184299e-02
7003	HEXIM2	1
7004	HEY1	1
7005	HEY2	1
7006	HEYL	1
7007	HFE	1
7008	HFE2	1
In gene HFM1 the following bins exceed PROBCAP:
    PRAD-G9-6494	categ 6	N = 4334    n = 1	mu =   2.35e-07
7009	HFM1	1.430856e-02
7010	HGD	1
7011	HGF	1.710400e-02
7012	HGFAC	1
7013	HGS	1
7014	HGSNAT	1
7015	HHAT	1
7016	HHATL	1
7017	HHEX	1
7018	HHIP	1
7019	HHIPL1	1
7020	HHIPL2	1.646388e-01
7021	HHLA2	1
7022	HHLA3	1
7023	HIAT1	1
7024	HIATL1	1
7025	HIBADH	1
7026	HIBCH	1
7027	HIC1	1
7028	HIC2	1
7029	HIF1A	1
7030	HIF1AN	1
7031	HIF3A	1
7032	HIGD1A	1
7033	HIGD1B	1
7034	HIGD1C	1
7035	HIGD2A	1
7036	HINFP	1
7037	HINT1	1
7038	HINT2	1
7039	HINT3	1
7040	HIP1	1
7041	HIP1R	1
7042	HIPK1	8.564332e-02
7043	HIPK2	1
7044	HIPK3	1
7045	HIPK4	1
7046	HIRA	1
7047	HIRIP3	1
7048	HIST1H1A	8.016958e-02
7049	HIST1H1B	1
7050	HIST1H1C	1
7051	HIST1H1D	1
7052	HIST1H1E	1
7053	HIST1H1T	1
7054	HIST1H2AA	1
7055	HIST1H2AB	1
7056	HIST1H2AC	1
7057	HIST1H2AD	1
7058	HIST1H2AE	1
7059	HIST1H2AG	1
7060	HIST1H2AH	1
7061	HIST1H2AI	1
7062	HIST1H2AJ	1
7063	HIST1H2AK	1
7064	HIST1H2AL	1
7065	HIST1H2AM	1
7066	HIST1H2BA	1
7067	HIST1H2BB	1
7068	HIST1H2BC	1
7069	HIST1H2BD	1
7070	HIST1H2BE	1
7071	HIST1H2BF	1
7072	HIST1H2BG	2.245477e-02
Done

Running MutSig 2:
Scatter job 78: processing genes 6983 - 7072
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
HERC2
Processing conservation and coverage...
67% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.483366e-02	ci left: 2.589418e-01	ci right 2.763938e-01	k: 2676	n:10000
Cons ci ratio: 7.138054e-02	ci left: 2.233609e-01	ci right 2.399957e-01	k: 2316	n:10000
KS ci ratio: 5.362097e-02	ci left: 3.388581e-01	ci right 3.576304e-01	k: 3482	n:10000
HERC2   10000 perm   3 sec   (3476 perm/sec)   p_kst 3.482000e-01   p_cons 2.316000e-01   p_joint 2.676000e-01

Outputting figure to mutsig2_images.part000000000078/HERC2.5_14873_10000_0.3482_0.2316_0.2676.png
                gene_name: HERC2
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 25 percent done.
HEXB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.566850e-01	ci left: 5.426821e-02	ci right 6.359080e-02	k: 588	n:10000
Cons ci ratio: 8.757768e-02	ci left: 1.595411e-01	ci right 1.742535e-01	k: 1668	n:10000
KS ci ratio: 8.352371e-02	ci left: 1.729074e-01	ci right 1.880792e-01	k: 1804	n:10000
HEXB   10000 perm   1 sec   (7247 perm/sec)   p_kst 1.804000e-01   p_cons 1.668000e-01   p_joint 5.880000e-02

Joint ci ratio: 1.337139e-01	ci left: 3.843897e-02	ci right 4.399542e-02	k: 823	n:20000
Cons ci ratio: 6.069853e-02	ci left: 1.672867e-01	ci right 1.778086e-01	k: 3450	n:20000
KS ci ratio: 5.859607e-02	ci left: 1.774648e-01	ci right 1.882275e-01	k: 3656	n:20000
HEXB   20000 perm   3 sec   (6416 perm/sec)   p_kst 1.828000e-01   p_cons 1.725000e-01   p_joint 4.115000e-02

Joint ci ratio: 5.474333e-02	ci left: 1.419561e-01	ci right 1.499792e-01	k: 4378	n:30000
Cons ci ratio: 5.000166e-02	ci left: 1.657648e-01	ci right 1.742992e-01	k: 5100	n:30000
KS ci ratio: 4.805557e-02	ci left: 1.771528e-01	ci right 1.859089e-01	k: 5445	n:30000
HEXB   30000 perm   5 sec   (6128 perm/sec)   p_kst 1.815000e-01   p_cons 1.700000e-01   p_joint 1.459333e-01

Outputting figure to mutsig2_images.part000000000078/HEXB.2_1727_30000_0.1815_0.17_0.14593.png
                gene_name: HEXB
               theta_stop: 0.055 
                    nperm: 30000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 50 percent done.
HFM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.427613e-02	ci left: 2.623061e-01	ci right 2.798274e-01	k: 2710	n:10000
KS ci ratio: 2.196797e-02	ci left: 7.525160e-01	ci right 7.693318e-01	k: 7610	n:10000
HFM1   10000 perm   2 sec   (6089 perm/sec)   p_kst 7.610000e-01   p_cons 2.710000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000078/HFM1.2_4460_10000_0.761_0.271_1.png
                gene_name: HFM1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
HGF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.017651e-01	ci left: 1.225867e-01	ci right 1.358301e-01	k: 1291	n:10000
Cons ci ratio: 9.663204e-02	ci left: 1.344301e-01	ci right 1.481796e-01	k: 1412	n:10000
KS ci ratio: 5.058591e-02	ci left: 3.655984e-01	ci right 3.846744e-01	k: 3751	n:10000
HGF   10000 perm   1 sec   (7001 perm/sec)   p_kst 3.751000e-01   p_cons 1.412000e-01   p_joint 1.291000e-01

Joint ci ratio: 8.111878e-02	ci left: 1.002931e-01	ci right 1.088222e-01	k: 2090	n:20000
Cons ci ratio: 6.894231e-02	ci left: 1.343318e-01	ci right 1.439734e-01	k: 2782	n:20000
KS ci ratio: 3.536102e-02	ci left: 3.738139e-01	ci right 3.873208e-01	k: 7611	n:20000
HGF   20000 perm   3 sec   (6139 perm/sec)   p_kst 3.805500e-01   p_cons 1.391000e-01   p_joint 1.045000e-01

Outputting figure to mutsig2_images.part000000000078/HGF.2_2279_20000_0.38055_0.1391_0.1045.png
                gene_name: HGF
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000078
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 78 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1652>
Subject: Job 9877291: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1652>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000079> was used as the working directory.
Started at Fri Oct  5 22:42:55 2012
Results reported at Fri Oct  5 22:44:45 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000079.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000079.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 79  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000079.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    108.25 sec.
    Max Memory :      1933 MB
    Max Swap   :      4590 MB

    Max Processes  :         7
    Max Threads    :        55

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
79
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 79
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 79: processing genes 7073 - 7163
Calculating significance of each gene.
Using projection method.
7073	HIST1H2BH	5.660701e-02
7074	HIST1H2BI	1
7075	HIST1H2BJ	1
7076	HIST1H2BK	1.945882e-02
7077	HIST1H2BL	1
7078	HIST1H2BM	1
7079	HIST1H2BN	2.939212e-02
7080	HIST1H2BO	1
7081	HIST1H3A	1
7082	HIST1H3B	1
7083	HIST1H3C	1
7084	HIST1H3D	1
7085	HIST1H3E	1
7086	HIST1H3F	1
7087	HIST1H3G	3.265333e-02
7088	HIST1H3H	1
7089	HIST1H3I	1
7090	HIST1H3J	1
7091	HIST1H4A	1
7092	HIST1H4B	1
7093	HIST1H4C	1
7094	HIST1H4D	1
7095	HIST1H4E	1
7096	HIST1H4F	1
7097	HIST1H4G	1
7098	HIST1H4H	1
7099	HIST1H4I	1
7100	HIST1H4J	1
7101	HIST1H4K	9.123725e-03
7102	HIST1H4L	1
7103	HIST2H2AB	1
7104	HIST2H2AC	1
7105	HIST2H2BE	1
7106	HIST2H2BF	3.197135e-02
7107	HIST2H3D	1
7108	HIST3H2A	1
7109	HIST3H2BB	1
7110	HIST3H3	3.877283e-02
7111	HIST4H4	1
7112	HIVEP1	5.522111e-01
7113	HIVEP2	2.818534e-01
7114	HIVEP3	1
7115	HJURP	1.926186e-01
7116	HK1	1
7117	HK2	1
7118	HK3	1
7119	HKDC1	2.824979e-01
7120	HKR1	1
7121	HLA-A	1
7122	HLA-B	8.330973e-02
7123	HLA-C	1.317302e-02
7124	HLA-DMA	1
7125	HLA-DMB	6.453979e-02
7126	HLA-DOA	1
7127	HLA-DOB	1
7128	HLA-DPA1	1
7129	HLA-DPB1	1
7130	HLA-DQA1	1
7131	HLA-DQA2	1
7132	HLA-DQB1	1
7133	HLA-DRA	1
7134	HLA-DRB1	1
7135	HLA-DRB5	1
7136	HLA-E	1
7137	HLA-F	6.290123e-02
7138	HLA-G	1
7139	HLCS	1
7140	HLF	1
7141	HLTF	1
7142	HLX	1
7143	HM13	1
7144	HMBOX1	1
7145	HMBS	1
7146	HMCN1	2.189313e-01
7147	HMG20A	1
7148	HMG20B	1
7149	HMGA1	1
7150	HMGA2	1
7151	HMGB1	1
7152	HMGB2	1
7153	HMGB3	1
7154	HMGB4	1
7155	HMGCL	1
7156	HMGCLL1	1
7157	HMGCR	1
7158	HMGCS1	1
7159	HMGCS2	9.215148e-02
7160	HMGN1	1
7161	HMGN2	1
7162	HMGN3	1
7163	HMGN4	1
Done

Running MutSig 2:
Scatter job 79: processing genes 7073 - 7163
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
HMCN1
Processing conservation and coverage...
57% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.526929e-02	ci left: 8.615148e-01	ci right 8.748699e-01	k: 8683	n:10000
Cons ci ratio: 3.246516e-02	ci left: 5.833956e-01	ci right 6.027502e-01	k: 5931	n:10000
KS ci ratio: 4.933479e-03	ci left: 9.818827e-01	ci right 9.868293e-01	k: 9845	n:10000
HMCN1   10000 perm   4 sec   (2482 perm/sec)   p_kst 9.845000e-01   p_cons 5.931000e-01   p_joint 8.683000e-01

Outputting figure to mutsig2_images.part000000000079/HMCN1.3_17336_10000_0.9845_0.5931_0.8683.png
                gene_name: HMCN1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 50 percent done.
HLA-C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.055514e-01	ci left: 1.147668e-01	ci right 1.276548e-01	k: 1211	n:10000
Cons ci ratio: 1.130635e-01	ci left: 1.012015e-01	ci right 1.134283e-01	k: 1072	n:10000
KS ci ratio: 2.600354e-02	ci left: 6.852655e-01	ci right 7.034211e-01	k: 6944	n:10000
HLA-C   10000 perm   2 sec   (5983 perm/sec)   p_kst 6.944000e-01   p_cons 1.072000e-01   p_joint 1.211000e-01

Joint ci ratio: 7.536455e-02	ci left: 1.146416e-01	ci right 1.236695e-01	k: 2382	n:20000
Cons ci ratio: 7.980377e-02	ci left: 1.033377e-01	ci right 1.119767e-01	k: 2152	n:20000
KS ci ratio: 1.834018e-02	ci left: 6.890691e-01	ci right 7.018741e-01	k: 13910	n:20000
HLA-C   20000 perm   4 sec   (5352 perm/sec)   p_kst 6.955000e-01   p_cons 1.076000e-01   p_joint 1.191000e-01

Outputting figure to mutsig2_images.part000000000079/HLA-C.2_1133_20000_0.6955_0.1076_0.1191.png
                gene_name: HLA-C
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000079
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 79 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1727>
Subject: Job 9877299: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1727>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000080> was used as the working directory.
Started at Fri Oct  5 22:43:25 2012
Results reported at Fri Oct  5 22:44:22 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000080.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000080.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 80  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000080.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     52.51 sec.
    Max Memory :       885 MB
    Max Swap   :      3705 MB

    Max Processes  :         7
    Max Threads    :        67

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
80
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 80
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 80: processing genes 7164 - 7254
Calculating significance of each gene.
Using projection method.
7164	HMGN5	1
7165	HMGXB4	1
7166	HMHA1	1
7167	HMHB1	1
7168	HMMR	1
7169	HMOX1	1
7170	HMOX2	1
7171	HMP19	1
7172	HMSD	1
7173	HMX2	1
7174	HMX3	1
7175	HN1	2.840723e-02
7176	HN1L	1
7177	HNF1A	8.550434e-02
7178	HNF1B	1
7179	HNF4A	1
7180	HNF4G	1.327687e-01
7181	HNMT	1
7182	HNRNPA0	1
7183	HNRNPA1	1
7184	HNRNPA1L2	1
7185	HNRNPA2B1	1
7186	HNRNPA3	1
7187	HNRNPAB	1
7188	HNRNPC	1
7189	HNRNPCL1	1
7190	HNRNPD	1
7191	HNRNPF	1
7192	HNRNPH1	1
7193	HNRNPH2	1
7194	HNRNPH3	1
7195	HNRNPK	1
7196	HNRNPL	7.594113e-02
7197	HNRNPM	1
7198	HNRNPR	1
7199	HNRNPU	1
7200	HNRNPUL1	1.897842e-01
7201	HNRNPUL2	1
7202	HNRPDL	1
7203	HNRPLL	1
7204	HOMER1	7.723692e-02
7205	HOMER2	1
7206	HOMER3	1
7207	HOMEZ	1
7208	HOOK1	1
7209	HOOK2	3.416372e-02
7210	HOOK3	3.234272e-02
7211	HOPX	1
7212	HORMAD1	1
7213	HORMAD2	1
7214	HOXA1	1
7215	HOXA10	1
7216	HOXA11	1
7217	HOXA13	1
7218	HOXA2	1
7219	HOXA3	1
7220	HOXA4	1
7221	HOXA5	1
7222	HOXA6	1
7223	HOXA7	1
7224	HOXA9	1
7225	HOXB1	1
7226	HOXB13	5.780307e-02
7227	HOXB2	1
7228	HOXB3	1.012493e-01
7229	HOXB4	1
7230	HOXB5	1
7231	HOXB6	1
7232	HOXB7	1
7233	HOXB8	1
7234	HOXB9	1
7235	HOXC10	1
7236	HOXC11	1
7237	HOXC12	1
7238	HOXC13	1
7239	HOXC4	1
7240	HOXC5	1
7241	HOXC6	1
7242	HOXC8	1
7243	HOXC9	1
7244	HOXD1	1
7245	HOXD10	1
7246	HOXD11	1
7247	HOXD12	1
7248	HOXD13	1
7249	HOXD3	1
7250	HOXD4	1
7251	HOXD8	1
7252	HOXD9	1
7253	HP	1
7254	HP1BP3	1.118192e-01
Done

Running MutSig 2:
Scatter job 80: processing genes 7164 - 7254
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
HOOK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.997367e-03	ci left: 9.341299e-01	ci right 9.436124e-01	k: 9390	n:10000
Cons ci ratio: 3.258635e-02	ci left: 5.815895e-01	ci right 6.009573e-01	k: 5913	n:10000
KS ci ratio: 5.559135e-02	ci left: 3.227699e-01	ci right 3.413280e-01	k: 3320	n:10000
HOOK2   10000 perm   2 sec   (5055 perm/sec)   p_kst 3.320000e-01   p_cons 5.913000e-01   p_joint 9.390000e-01

Outputting figure to mutsig2_images.part000000000080/HOOK2.2_2252_10000_0.332_0.5913_0.939.png
                gene_name: HOOK2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000080
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 80 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1723>
Subject: Job 9877311: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1723>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000081> was used as the working directory.
Started at Fri Oct  5 22:43:38 2012
Results reported at Fri Oct  5 22:44:56 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000081.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000081.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 81  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000081.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     67.93 sec.
    Max Memory :      1919 MB
    Max Swap   :      4672 MB

    Max Processes  :         7
    Max Threads    :        71

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
81
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 81
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 81: processing genes 7255 - 7344
Calculating significance of each gene.
Using projection method.
7255	HPCA	1
7256	HPCAL1	1
7257	HPCAL4	1
7258	HPD	1
7259	HPDL	1
7260	HPGD	1
7261	HPGDS	1
7262	HPN	1
7263	HPR	1
7264	HPRT1	1
7265	HPS1	6.524366e-02
7266	HPS3	1
7267	HPS4	1.835300e-01
7268	HPS5	1
7269	HPS6	1
7270	HPSE	1.452510e-02
7271	HPSE2	1
7272	HPX	1
7273	HR	1
7274	HRAS	1
7275	HRASLS	1
7276	HRASLS2	2.354017e-02
7277	HRASLS5	8.755495e-02
7278	HRC	1.799355e-01
7279	HRCT1	1
7280	HRG	1
7281	HRH1	1
7282	HRH2	1
7283	HRH3	1
7284	HRH4	1
7285	HRNR	7.270501e-03
7286	HRSP12	1
7287	HS1BP3	1
7288	HS2ST1	1
7289	HS3ST1	1
7290	HS3ST2	1
7291	HS3ST3A1	1
7292	HS3ST3B1	1
7293	HS3ST4	1
7294	HS3ST5	1
7295	HS3ST6	1
7296	HS6ST1	1.004597e-03
7297	HS6ST2	1
7298	HS6ST3	1
7299	HSBP1	1
7300	HSCB	1
7301	HSD11B1	1
7302	HSD11B1L	1
7303	HSD11B2	1
7304	HSD17B1	1
7305	HSD17B10	1
7306	HSD17B11	1
7307	HSD17B12	1
7308	HSD17B13	1
7309	HSD17B14	1
7310	HSD17B2	1
7311	HSD17B3	1.375179e-02
7312	HSD17B4	1.426709e-01
7313	HSD17B6	1
7314	HSD17B7	1
7315	HSD17B8	1
7316	HSD3B1	1
7317	HSD3B2	1
7318	HSD3B7	1
7319	HSDL1	1
7320	HSDL2	1.110884e-01
7321	HSF1	1
7322	HSF2	1.282139e-01
7323	HSF2BP	1
7324	HSF4	1
7325	HSF5	1
7326	HSH2D	1
7327	HSP90AA1	1
7328	HSP90AB1	1
7329	HSP90B1	1
7330	HSPA12A	1
7331	HSPA12B	1
7332	HSPA13	1
7333	HSPA14	1
7334	HSPA1A	1
7335	HSPA1B	1
7336	HSPA1L	1
7337	HSPA2	1
7338	HSPA4	1
7339	HSPA4L	1.671912e-01
7340	HSPA5	1
7341	HSPA6	1.457022e-01
7342	HSPA8	1
7343	HSPA9	1
7344	HSPB1	1
Done

Running MutSig 2:
Scatter job 81: processing genes 7255 - 7344
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
HRNR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.593756e-02	ci left: 2.023480e-01	ci right 2.184211e-01	k: 2103	n:10000
Cons ci ratio: 1.895761e-01	ci left: 3.710237e-02	ci right 4.496786e-02	k: 409	n:10000
KS ci ratio: 1.648870e-02	ci left: 8.425440e-01	ci right 8.566516e-01	k: 8497	n:10000
HRNR   10000 perm   2 sec   (4288 perm/sec)   p_kst 8.497000e-01   p_cons 4.090000e-02   p_joint 2.103000e-01

Joint ci ratio: 6.589195e-02	ci left: 1.453734e-01	ci right 1.553285e-01	k: 3006	n:20000
Cons ci ratio: 1.300529e-01	ci left: 4.061770e-02	ci right 4.631599e-02	k: 868	n:20000
KS ci ratio: 1.212274e-02	ci left: 8.342879e-01	ci right 8.445133e-01	k: 16789	n:20000
HRNR   20000 perm   7 sec   (2872 perm/sec)   p_kst 8.394500e-01   p_cons 4.340000e-02   p_joint 1.503000e-01

Joint ci ratio: 4.927020e-02	ci left: 1.699231e-01	ci right 1.785400e-01	k: 5226	n:30000
Cons ci ratio: 1.051596e-01	ci left: 4.193421e-02	ci right 4.662123e-02	k: 1327	n:30000
KS ci ratio: 9.899846e-03	ci left: 8.351958e-01	ci right 8.435384e-01	k: 25182	n:30000
HRNR   30000 perm   10 sec   (3099 perm/sec)   p_kst 8.394000e-01   p_cons 4.423333e-02   p_joint 1.742000e-01

Joint ci ratio: 4.508935e-02	ci left: 1.553297e-01	ci right 1.625199e-01	k: 6356	n:40000
Cons ci ratio: 9.642769e-02	ci left: 3.775869e-02	ci right 4.160850e-02	k: 1586	n:40000
KS ci ratio: 8.601250e-03	ci left: 8.348819e-01	ci right 8.421189e-01	k: 33541	n:40000
HRNR   40000 perm   12 sec   (3215 perm/sec)   p_kst 8.385250e-01   p_cons 3.965000e-02   p_joint 1.589000e-01

Outputting figure to mutsig2_images.part000000000081/HRNR.4_8561_40000_0.83852_0.03965_0.1589.png
                gene_name: HRNR
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.16 

Current progress: 50 percent done.
HS6ST1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.635020e-02	ci left: 5.277682e-01	ci right 5.474099e-01	k: 5376	n:10000
Cons ci ratio: 4.918069e-02	ci left: 3.788311e-01	ci right 3.980340e-01	k: 3884	n:10000
KS ci ratio: 3.496175e-02	ci left: 5.470984e-01	ci right 5.666684e-01	k: 5569	n:10000
HS6ST1   10000 perm   1 sec   (7312 perm/sec)   p_kst 5.569000e-01   p_cons 3.884000e-01   p_joint 5.376000e-01

Outputting figure to mutsig2_images.part000000000081/HS6ST1.2_1244_10000_0.5569_0.3884_0.5376.png
                gene_name: HS6ST1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000081
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 81 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1648>
Subject: Job 9877322: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1648>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000082> was used as the working directory.
Started at Fri Oct  5 22:43:55 2012
Results reported at Fri Oct  5 22:45:35 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000082.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000082.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 82  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000082.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    103.34 sec.
    Max Memory :      2078 MB
    Max Swap   :      4712 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
82
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 82
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 82: processing genes 7345 - 7435
Calculating significance of each gene.
Using projection method.
7345	HSPB11	1
7346	HSPB2	1
7347	HSPB3	1
7348	HSPB7	1
7349	HSPB8	1
7350	HSPB9	1
7351	HSPBAP1	1
7352	HSPBP1	1.432619e-02
7353	HSPC159	1
7354	HSPD1	1
7355	HSPE1	1
7356	HSPG2	8.044590e-02
7357	HSPH1	1
7358	HTATIP2	1
7359	HTATSF1	1.491592e-01
7360	HTN1	1
7361	HTN3	1
7362	HTR1A	1.460105e-01
7363	HTR1B	1
7364	HTR1D	1
7365	HTR1E	1
7366	HTR1F	1
7367	HTR2A	1
7368	HTR2B	1
7369	HTR2C	1
7370	HTR3A	1
7371	HTR3B	1
7372	HTR3C	1
7373	HTR3D	1
7374	HTR3E	1
7375	HTR4	1
7376	HTR5A	2.758314e-02
7377	HTR6	1
7378	HTR7	1
7379	HTRA1	1
7380	HTRA2	1
7381	HTRA3	1
7382	HTRA4	1
7383	HTT	1.996892e-01
7384	HUNK	1
7385	HUS1	1
7386	HUS1B	1
7387	HUWE1	1
7388	HVCN1	1
7389	HYAL1	1
7390	HYAL2	1
7391	HYAL3	8.620520e-02
7392	HYAL4	1
7393	HYDIN	7.727443e-01
7394	HYI	1
7395	HYLS1	1
7396	HYOU1	1
7397	IAH1	1
7398	IAPP	1
7399	IARS	1
7400	IARS2	1
7401	IBSP	1
7402	IBTK	1
7403	ICA1	1
7404	ICA1L	1.398143e-01
7405	ICAM1	1
7406	ICAM2	1
7407	ICAM3	1
7408	ICAM4	1
7409	ICAM5	1
7410	ICK	1.870755e-01
7411	ICMT	1
7412	ICOS	1
7413	ICOSLG	1
7414	ICT1	1
7415	ID1	1
7416	ID2	1
7417	ID3	1
7418	ID4	1
7419	IDE	1
7420	IDH1	8.335877e-02
7421	IDH2	1
In gene IDH3A the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 1114    n = 1	mu =   9.08e-07
7422	IDH3A	1.255983e-01
7423	IDH3B	1
7424	IDH3G	1
7425	IDI1	1
7426	IDI2	1
7427	IDO1	1
7428	IDO2	1
7429	IDS	1
7430	IDUA	1
7431	IER2	1
7432	IER3	1
7433	IER3IP1	1
7434	IER5	1
7435	IER5L	1
Done

Running MutSig 2:
Scatter job 82: processing genes 7345 - 7435
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
HSPG2
Processing conservation and coverage...
73% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.120649e-02	ci left: 7.652685e-01	ci right 7.817719e-01	k: 7736	n:10000
Cons ci ratio: 1.124744e-02	ci left: 9.186317e-01	ci right 9.291198e-01	k: 9240	n:10000
KS ci ratio: 3.702067e-02	ci left: 5.186590e-01	ci right 5.383244e-01	k: 5285	n:10000
HSPG2   10000 perm   3 sec   (3121 perm/sec)   p_kst 5.285000e-01   p_cons 9.240000e-01   p_joint 7.736000e-01

Outputting figure to mutsig2_images.part000000000082/HSPG2.4_13564_10000_0.5285_0.924_0.7736.png
                gene_name: HSPG2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 50 percent done.
HTT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.935551e-02	ci left: 7.960815e-01	ci right 8.117411e-01	k: 8040	n:10000
Cons ci ratio: 3.733377e-02	ci left: 5.144559e-01	ci right 5.341300e-01	k: 5243	n:10000
KS ci ratio: 1.351440e-01	ci left: 7.233299e-02	ci right 8.291462e-02	k: 775	n:10000
HTT   10000 perm   3 sec   (3984 perm/sec)   p_kst 7.750000e-02   p_cons 5.243000e-01   p_joint 8.040000e-01

Joint ci ratio: 4.375320e-02	ci left: 2.800914e-01	ci right 2.926708e-01	k: 5727	n:20000
Cons ci ratio: 2.535312e-02	ci left: 5.375169e-01	ci right 5.513702e-01	k: 10889	n:20000
KS ci ratio: 9.692394e-02	ci left: 7.192427e-02	ci right 7.929968e-02	k: 1511	n:20000
HTT   20000 perm   6 sec   (3389 perm/sec)   p_kst 7.555000e-02   p_cons 5.444500e-01   p_joint 2.863500e-01

Outputting figure to mutsig2_images.part000000000082/HTT.2_9697_20000_0.07555_0.54445_0.28635.png
                gene_name: HTT
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.076 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000082
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 82 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1642>
Subject: Job 9877327: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1642>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000083> was used as the working directory.
Started at Fri Oct  5 22:43:55 2012
Results reported at Fri Oct  5 22:45:17 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000083.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000083.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 83  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000083.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    108.36 sec.
    Max Memory :      1743 MB
    Max Swap   :      4700 MB

    Max Processes  :         7
    Max Threads    :        91

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
83
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 83
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 83: processing genes 7436 - 7526
Calculating significance of each gene.
Using projection method.
7436	IFFO1	1
7437	IFI16	2.034712e-01
7438	IFI27	1
7439	IFI27L1	1
7440	IFI27L2	1
7441	IFI30	1
7442	IFI35	1
7443	IFI44	1
7444	IFI44L	1
7445	IFI6	1
7446	IFIH1	1
7447	IFIT1	9.732703e-02
7448	IFIT1B	1
7449	IFIT2	1
7450	IFIT3	1
7451	IFIT5	1
7452	IFITM1	1
7453	IFITM2	1
7454	IFITM3	1
7455	IFITM5	1
7456	IFLTD1	1
7457	IFNA1	1
7458	IFNA10	5.698105e-02
7459	IFNA13	2.574715e-02
7460	IFNA14	1
7461	IFNA16	1
7462	IFNA17	1
7463	IFNA2	1
7464	IFNA21	1
7465	IFNA4	1
7466	IFNA5	1
7467	IFNA6	1
7468	IFNA7	1
7469	IFNA8	1
7470	IFNAR1	1
7471	IFNAR2	1.899484e-02
7472	IFNB1	1
7473	IFNE	1
7474	IFNG	1
7475	IFNGR1	1
7476	IFNGR2	1
7477	IFNK	1
7478	IFNW1	1
7479	IFRD1	1
7480	IFRD2	1
7481	IFT122	3.265526e-01
7482	IFT140	1
7483	IFT172	1
7484	IFT20	1
7485	IFT27	1
7486	IFT46	1
7487	IFT52	1
7488	IFT57	1
7489	IFT74	1
7490	IFT80	7.095844e-02
7491	IFT81	1
7492	IFT88	1
7493	IGBP1	1.345836e-02
7494	IGDCC3	2.767484e-01
7495	IGDCC4	1.681381e-02
7496	IGF1	1
7497	IGF1R	2.582717e-01
7498	IGF2	1
7499	IGF2BP1	1.141323e-01
7500	IGF2BP2	3.183161e-02
7501	IGF2BP3	9.473645e-02
7502	IGF2R	1
7503	IGFALS	1
7504	IGFBP1	1
7505	IGFBP2	1
7506	IGFBP3	1
7507	IGFBP4	1
7508	IGFBP5	1
7509	IGFBP6	1
7510	IGFBP7	1
7511	IGFBPL1	1
7512	IGFL1	1
7513	IGFL2	1
7514	IGFL3	1
7515	IGFL4	1
7516	IGHMBP2	1.666984e-01
7517	IGJ	1
7518	IGLL1	1
7519	IGLL5	1
7520	IGLON5	1
7521	IGSF1	1
7522	IGSF10	5.925592e-01
7523	IGSF11	1
7524	IGSF21	1
7525	IGSF22	2.229949e-01
7526	IGSF3	1
Done

Running MutSig 2:
Scatter job 83: processing genes 7436 - 7526
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
IGBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.451070e-02	ci left: 5.535118e-01	ci right 5.730513e-01	k: 5633	n:10000
Cons ci ratio: 1.080128e-02	ci left: 9.243065e-01	ci right 9.344416e-01	k: 9295	n:10000
KS ci ratio: 1.366775e-01	ci left: 7.078334e-02	ci right 8.126524e-02	k: 759	n:10000
IGBP1   10000 perm   2 sec   (5929 perm/sec)   p_kst 7.590000e-02   p_cons 9.295000e-01   p_joint 5.633000e-01

Joint ci ratio: 3.215593e-02	ci left: 4.193824e-01	ci right 4.331390e-01	k: 8525	n:20000
Cons ci ratio: 7.586126e-03	ci left: 9.267341e-01	ci right 9.338402e-01	k: 18607	n:20000
KS ci ratio: 9.542997e-02	ci left: 7.407543e-02	ci right 8.154786e-02	k: 1555	n:20000
IGBP1   20000 perm   6 sec   (3375 perm/sec)   p_kst 7.775000e-02   p_cons 9.303500e-01   p_joint 4.262500e-01

Outputting figure to mutsig2_images.part000000000083/IGBP1.2_1044_20000_0.07775_0.93035_0.42625.png
                gene_name: IGBP1
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.074 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.43 

Current progress: 50 percent done.
IGDCC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.971560e-02	ci left: 1.530607e-01	ci right 1.675377e-01	k: 1602	n:10000
Cons ci ratio: 3.071196e-02	ci left: 6.100009e-01	ci right 6.291294e-01	k: 6196	n:10000
KS ci ratio: 9.533935e-02	ci left: 1.376631e-01	ci right 1.515446e-01	k: 1445	n:10000
IGDCC4   10000 perm   2 sec   (5505 perm/sec)   p_kst 1.445000e-01   p_cons 6.196000e-01   p_joint 1.602000e-01

Outputting figure to mutsig2_images.part000000000083/IGDCC4.2_3833_10000_0.1445_0.6196_0.1602.png
                gene_name: IGDCC4
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.17 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000083
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 83 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1727>
Subject: Job 9877343: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1727>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000084> was used as the working directory.
Started at Fri Oct  5 22:44:26 2012
Results reported at Fri Oct  5 22:45:18 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000084.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000084.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 84  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000084.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     46.53 sec.
    Max Memory :       887 MB
    Max Swap   :      3649 MB

    Max Processes  :         7
    Max Threads    :        67

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
84
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 84
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 84: processing genes 7527 - 7616
Calculating significance of each gene.
Using projection method.
7527	IGSF5	1
7528	IGSF6	1
7529	IGSF8	1.913345e-01
7530	IGSF9	1
7531	IGSF9B	1
7532	IHH	1
7533	IK	1
7534	IKBIP	1
7535	IKBKAP	2.463527e-01
7536	IKBKB	1
7537	IKBKE	1
7538	IKZF1	1
7539	IKZF2	1
7540	IKZF3	1
7541	IKZF4	1
7542	IKZF5	1
7543	IL10	1
7544	IL10RA	1
7545	IL10RB	1
7546	IL11	1
7547	IL11RA	1
7548	IL12A	1
7549	IL12B	1
7550	IL12RB1	1
7551	IL12RB2	1
7552	IL13	1
7553	IL13RA1	1
7554	IL13RA2	1
7555	IL15	1
7556	IL15RA	1
7557	IL16	1
7558	IL17A	1
7559	IL17B	1
7560	IL17C	1
7561	IL17D	1
7562	IL17F	1
7563	IL17RA	1
7564	IL17RB	1.488066e-01
7565	IL17RC	2.137921e-01
7566	IL17RD	1
7567	IL17RE	1
7568	IL17REL	1
7569	IL18	1
7570	IL18BP	1
7571	IL18R1	1
7572	IL18RAP	1
7573	IL19	1
7574	IL1A	1
7575	IL1B	1
7576	IL1F10	1
7577	IL1F5	1
7578	IL1F6	1
7579	IL1F7	1
7580	IL1F8	1
7581	IL1F9	1
7582	IL1R1	1
7583	IL1R2	1
7584	IL1RAP	1
7585	IL1RAPL1	1
7586	IL1RAPL2	1
7587	IL1RL1	1
7588	IL1RL2	1.382714e-01
7589	IL1RN	1
7590	IL2	1
7591	IL20	1
7592	IL20RA	1
7593	IL20RB	1
7594	IL21	1
7595	IL21R	1.210195e-01
7596	IL22	1
7597	IL22RA1	1
7598	IL22RA2	1
7599	IL23A	1
7600	IL23R	1
7601	IL24	1
7602	IL25	1
7603	IL26	1
7604	IL27	1
7605	IL27RA	1
7606	IL28A	1
7607	IL28B	1
7608	IL28RA	1
7609	IL29	1
7610	IL2RA	1
7611	IL2RB	1
7612	IL2RG	1
7613	IL3	1
7614	IL31	1
7615	IL31RA	1
7616	IL32	1
Done

Running MutSig 2:
Scatter job 84: processing genes 7527 - 7616
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000084
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 84 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1651>
Subject: Job 9877364: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1651>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000085> was used as the working directory.
Started at Fri Oct  5 22:44:38 2012
Results reported at Fri Oct  5 23:13:35 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000085.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000085.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 85  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000085.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1770.94 sec.
    Max Memory :      2066 MB
    Max Swap   :      4726 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
85
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 85
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 85: processing genes 7617 - 7707
Calculating significance of each gene.
Using projection method.
7617	IL33	1
7618	IL34	1
7619	IL3RA	1
7620	IL4	1
7621	IL4I1	1
7622	IL4R	2.457955e-01
7623	IL5	1
7624	IL5RA	1.235083e-01
7625	IL6	1
7626	IL6R	1
7627	IL6ST	8.863466e-02
7628	IL7	1
7629	IL7R	1
7630	IL8	1
7631	IL9	1
7632	IL9R	1
7633	ILDR1	1
7634	ILDR2	1
7635	ILF2	1
7636	ILF3	1
7637	ILK	1
7638	ILKAP	1
7639	ILVBL	1
7640	IMMP1L	1
7641	IMMP2L	1
7642	IMMT	1
7643	IMP3	1
7644	IMP4	3.934854e-02
7645	IMP5	1
7646	IMPA1	1
7647	IMPA2	1
7648	IMPACT	1
7649	IMPAD1	1
7650	IMPDH1	1
7651	IMPDH2	1
7652	IMPG1	1
7653	IMPG2	1
7654	INA	6.360269e-03
In gene INADL the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 5574    n = 1	mu =   9.08e-07
7655	INADL	4.356935e-03
7656	INCA1	1
7657	INCENP	1
7658	INF2	1
7659	ING1	1
7660	ING2	1
7661	ING3	1
7662	ING4	1
7663	ING5	1
7664	INHA	1
7665	INHBA	8.687809e-03
7666	INHBB	1
7667	INHBC	5.842125e-02
7668	INHBE	1
7669	INMT	4.391054e-02
7670	INO80	2.974496e-01
7671	INO80B	1
7672	INO80C	1
7673	INO80D	1
7674	INO80E	1
7675	INPP1	1
7676	INPP4A	1
7677	INPP4B	1
7678	INPP5A	1
7679	INPP5B	1
7680	INPP5D	1
7681	INPP5E	1
7682	INPP5F	1
7683	INPP5J	1
7684	INPP5K	1
7685	INPPL1	1
7686	INS	1
7687	INS-IGF2	1
7688	INSC	1
7689	INSIG1	1
7690	INSIG2	1
7691	INSL3	1
7692	INSL4	1
7693	INSL5	1
7694	INSL6	1
7695	INSM1	1
7696	INSM2	1
7697	INSR	1
7698	INSRR	1
7699	INTS1	3.738536e-01
7700	INTS10	1
7701	INTS12	9.230569e-02
7702	INTS2	2.525754e-01
7703	INTS3	1
7704	INTS4	4.062750e-02
7705	INTS5	1
7706	INTS6	1.620665e-01
7707	INTS7	1
Done

Running MutSig 2:
Scatter job 85: processing genes 7617 - 7707
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
INADL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.798676e-02	ci left: 8.185266e-01	ci right 8.334830e-01	k: 8261	n:10000
KS ci ratio: 1.834860e-02	ci left: 8.126320e-01	ci right 8.277809e-01	k: 8203	n:10000
INADL   10000 perm   3 sec   (3961 perm/sec)   p_kst 8.203000e-01   p_cons 8.261000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000085/INADL.4_5574_10000_0.8203_0.8261_1.png
                gene_name: INADL
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
INA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.791669e-01	ci left: 8.397740e-04	ci right 2.472817e-03	k: 15	n:10000
Cons ci ratio: 1.594303e-02	ci left: 8.511065e-01	ci right 8.648842e-01	k: 8581	n:10000
KS ci ratio: 1.481028e+00	ci left: 2.202202e-04	ci right 1.305486e-03	k: 6	n:10000
INA   10000 perm   2 sec   (6130 perm/sec)   p_kst 6.000000e-04   p_cons 8.581000e-01   p_joint 1.500000e-03

Joint ci ratio: 3.693575e-01	ci left: 4.567803e-03	ci right 6.679840e-03	k: 111	n:20000
Cons ci ratio: 1.140186e-02	ci left: 8.503478e-01	ci right 8.601487e-01	k: 17106	n:20000
KS ci ratio: 1.239272e+00	ci left: 2.057886e-04	ci right 8.540675e-04	k: 9	n:20000
INA   20000 perm   4 sec   (5593 perm/sec)   p_kst 4.500000e-04   p_cons 8.553000e-01   p_joint 5.550000e-03

Joint ci ratio: 3.430554e-01	ci left: 3.591244e-03	ci right 5.107218e-03	k: 129	n:30000
Cons ci ratio: 9.339432e-03	ci left: 8.504590e-01	ci right 8.584722e-01	k: 25635	n:30000
KS ci ratio: 9.236603e-01	ci left: 3.301378e-04	ci right 9.071337e-04	k: 17	n:30000
INA   30000 perm   6 sec   (5385 perm/sec)   p_kst 5.666667e-04   p_cons 8.545000e-01   p_joint 4.300000e-03

Joint ci ratio: 5.380899e-01	ci left: 9.710499e-04	ci right 1.704432e-03	k: 52	n:40000
Cons ci ratio: 8.086468e-03	ci left: 8.510568e-01	ci right 8.579916e-01	k: 34182	n:40000
KS ci ratio: 8.171313e-01	ci left: 3.447132e-04	ci right 8.325889e-04	k: 22	n:40000
INA   40000 perm   8 sec   (5236 perm/sec)   p_kst 5.500000e-04   p_cons 8.545500e-01   p_joint 1.300000e-03

Joint ci ratio: 6.720391e-01	ci left: 4.543558e-04	ci right 9.267617e-04	k: 33	n:50000
Cons ci ratio: 7.227762e-03	ci left: 8.516007e-01	ci right 8.577981e-01	k: 42736	n:50000
KS ci ratio: 7.837961e-01	ci left: 3.075685e-04	ci right 7.141183e-04	k: 24	n:50000
INA   50000 perm   10 sec   (5106 perm/sec)   p_kst 4.800000e-04   p_cons 8.547200e-01   p_joint 6.600000e-04

Joint ci ratio: 3.560012e-01	ci left: 1.658468e-03	ci right 2.391041e-03	k: 120	n:60000
Cons ci ratio: 6.581682e-03	ci left: 8.524932e-01	ci right 8.581391e-01	k: 51320	n:60000
KS ci ratio: 6.720784e-01	ci left: 3.786240e-04	ci right 7.723186e-04	k: 33	n:60000
INA   60000 perm   12 sec   (4995 perm/sec)   p_kst 5.500000e-04   p_cons 8.553333e-01   p_joint 2.000000e-03

Joint ci ratio: 4.249224e-01	ci left: 9.572764e-04	ci right 1.485469e-03	k: 84	n:70000
Cons ci ratio: 6.088274e-03	ci left: 8.529167e-01	ci right 8.581395e-01	k: 59888	n:70000
KS ci ratio: 6.046833e-01	ci left: 4.203504e-04	ci right 7.945046e-04	k: 41	n:70000
INA   70000 perm   14 sec   (4862 perm/sec)   p_kst 5.857143e-04   p_cons 8.555429e-01   p_joint 1.200000e-03

Joint ci ratio: 1.950188e-01	ci left: 4.534900e-03	ci right 5.526518e-03	k: 401	n:80000
Cons ci ratio: 5.700639e-03	ci left: 8.528431e-01	ci right 8.577311e-01	k: 68424	n:80000
KS ci ratio: 5.434261e-01	ci left: 4.746963e-04	ci right 8.381106e-04	k: 51	n:80000
INA   80000 perm   17 sec   (4752 perm/sec)   p_kst 6.375000e-04   p_cons 8.553000e-01   p_joint 5.012500e-03

Joint ci ratio: 1.677141e-01	ci left: 5.527173e-03	ci right 6.549503e-03	k: 542	n:90000
Cons ci ratio: 5.379910e-03	ci left: 8.527386e-01	ci right 8.573496e-01	k: 76955	n:90000
KS ci ratio: 5.145525e-01	ci left: 4.797147e-04	ci right 8.204800e-04	k: 57	n:90000
INA   90000 perm   19 sec   (4669 perm/sec)   p_kst 6.333333e-04   p_cons 8.550556e-01   p_joint 6.022222e-03

Joint ci ratio: 1.696604e-01	ci left: 4.859377e-03	ci right 5.769678e-03	k: 530	n:100000
Cons ci ratio: 5.104761e-03	ci left: 8.528125e-01	ci right 8.571869e-01	k: 85501	n:100000
KS ci ratio: 5.017490e-01	ci left: 4.578935e-04	ci right 7.722524e-04	k: 60	n:100000
INA   100000 perm   22 sec   (4550 perm/sec)   p_kst 6.000000e-04   p_cons 8.550100e-01   p_joint 5.300000e-03

Joint ci ratio: 2.352322e-01	ci left: 2.222090e-03	ci right 2.822801e-03	k: 276	n:110000
Cons ci ratio: 4.870957e-03	ci left: 8.527225e-01	ci right 8.568952e-01	k: 94030	n:110000
KS ci ratio: 4.524862e-01	ci left: 5.282714e-04	ci right 8.444749e-04	k: 74	n:110000
INA   110000 perm   25 sec   (4475 perm/sec)   p_kst 6.727273e-04   p_cons 8.548182e-01   p_joint 2.509091e-03

Joint ci ratio: 1.607124e-01	ci left: 4.536752e-03	ci right 5.337461e-03	k: 591	n:120000
Cons ci ratio: 4.664550e-03	ci left: 8.527604e-01	ci right 8.567557e-01	k: 102572	n:120000
KS ci ratio: 4.225512e-01	ci left: 5.658295e-04	ci right 8.757918e-04	k: 85	n:120000
INA   120000 perm   27 sec   (4407 perm/sec)   p_kst 7.083333e-04   p_cons 8.547667e-01   p_joint 4.925000e-03

Joint ci ratio: 2.120005e-01	ci left: 2.345049e-03	ci right 2.908271e-03	k: 340	n:130000
Cons ci ratio: 4.487195e-03	ci left: 8.525251e-01	ci right 8.563668e-01	k: 111079	n:130000
KS ci ratio: 4.085420e-01	ci left: 5.636326e-04	ci right 8.593764e-04	k: 91	n:130000
INA   130000 perm   30 sec   (4338 perm/sec)   p_kst 7.000000e-04   p_cons 8.544538e-01   p_joint 2.615385e-03

Joint ci ratio: 1.472630e-01	ci left: 4.664762e-03	ci right 5.413107e-03	k: 704	n:140000
Cons ci ratio: 4.309744e-03	ci left: 8.534176e-01	ci right 8.571106e-01	k: 119738	n:140000
KS ci ratio: 3.861056e-01	ci left: 5.941008e-04	ci right 8.843671e-04	k: 102	n:140000
INA   140000 perm   33 sec   (4270 perm/sec)   p_kst 7.285714e-04   p_cons 8.552714e-01   p_joint 5.028571e-03

Joint ci ratio: 1.959836e-01	ci left: 2.399327e-03	ci right 2.926856e-03	k: 398	n:150000
Cons ci ratio: 4.159648e-03	ci left: 8.537172e-01	ci right 8.572824e-01	k: 128326	n:150000
KS ci ratio: 3.654005e-01	ci left: 6.269459e-04	ci right 9.129223e-04	k: 114	n:150000
INA   150000 perm   36 sec   (4202 perm/sec)   p_kst 7.600000e-04   p_cons 8.555067e-01   p_joint 2.653333e-03

Joint ci ratio: 1.905702e-01	ci left: 2.386162e-03	ci right 2.894627e-03	k: 421	n:160000
Cons ci ratio: 4.031028e-03	ci left: 8.535604e-01	ci right 8.570142e-01	k: 136847	n:160000
KS ci ratio: 3.547637e-01	ci left: 6.275546e-04	ci right 9.035557e-04	k: 121	n:160000
INA   160000 perm   39 sec   (4133 perm/sec)   p_kst 7.562500e-04   p_cons 8.552937e-01   p_joint 2.631250e-03

Joint ci ratio: 2.379325e-01	ci left: 1.404548e-03	ci right 1.789241e-03	k: 270	n:170000
Cons ci ratio: 3.912801e-03	ci left: 8.534768e-01	ci right 8.568287e-01	k: 145377	n:170000
KS ci ratio: 3.397731e-01	ci left: 6.497058e-04	ci right 9.207286e-04	k: 132	n:170000
INA   170000 perm   42 sec   (4038 perm/sec)   p_kst 7.764706e-04   p_cons 8.551588e-01   p_joint 1.588235e-03

Joint ci ratio: 2.328359e-01	ci left: 1.389251e-03	ci right 1.760431e-03	k: 282	n:180000
Cons ci ratio: 3.809938e-03	ci left: 8.530412e-01	ci right 8.563029e-01	k: 153842	n:180000
KS ci ratio: 3.288284e-01	ci left: 6.594160e-04	ci right 9.237569e-04	k: 141	n:180000
INA   180000 perm   45 sec   (3980 perm/sec)   p_kst 7.833333e-04   p_cons 8.546778e-01   p_joint 1.566667e-03

Joint ci ratio: 2.246469e-01	ci left: 1.420330e-03	ci right 1.784621e-03	k: 303	n:190000
Cons ci ratio: 3.710423e-03	ci left: 8.529435e-01	ci right 8.561194e-01	k: 162362	n:190000
KS ci ratio: 3.137215e-01	ci left: 6.924575e-04	ci right 9.547384e-04	k: 155	n:190000
INA   190000 perm   49 sec   (3907 perm/sec)   p_kst 8.157895e-04   p_cons 8.545368e-01   p_joint 1.594737e-03

Joint ci ratio: 2.169312e-01	ci left: 1.453235e-03	ci right 1.811458e-03	k: 325	n:200000
Cons ci ratio: 3.621661e-03	ci left: 8.526256e-01	ci right 8.557241e-01	k: 170836	n:200000
KS ci ratio: 3.023068e-01	ci left: 7.132003e-04	ci right 9.716212e-04	k: 167	n:200000
INA   200000 perm   52 sec   (3851 perm/sec)   p_kst 8.350000e-04   p_cons 8.541800e-01   p_joint 1.625000e-03

Joint ci ratio: 2.081695e-01	ci left: 1.510277e-03	ci right 1.865610e-03	k: 353	n:210000
Cons ci ratio: 3.535243e-03	ci left: 8.526021e-01	ci right 8.556263e-01	k: 179365	n:210000
KS ci ratio: 2.896478e-01	ci left: 7.453680e-04	ci right 1.002065e-03	k: 182	n:210000
INA   210000 perm   55 sec   (3798 perm/sec)   p_kst 8.666667e-04   p_cons 8.541190e-01   p_joint 1.680952e-03

Joint ci ratio: 2.052933e-01	ci left: 1.484727e-03	ci right 1.828617e-03	k: 363	n:220000
Cons ci ratio: 3.455107e-03	ci left: 8.525541e-01	ci right 8.555093e-01	k: 187888	n:220000
KS ci ratio: 2.850149e-01	ci left: 7.367947e-04	ci right 9.857505e-04	k: 188	n:220000
INA   220000 perm   59 sec   (3734 perm/sec)   p_kst 8.545455e-04   p_cons 8.540364e-01   p_joint 1.650000e-03

Joint ci ratio: 1.546145e-01	ci left: 2.571441e-03	ci right 3.006457e-03	k: 640	n:230000
Cons ci ratio: 3.379536e-03	ci left: 8.525590e-01	ci right 8.554494e-01	k: 196422	n:230000
KS ci ratio: 2.784617e-01	ci left: 7.411266e-04	ci right 9.847791e-04	k: 197	n:230000
INA   230000 perm   62 sec   (3680 perm/sec)   p_kst 8.565217e-04   p_cons 8.540087e-01   p_joint 2.782609e-03

Joint ci ratio: 1.504449e-01	ci left: 2.608577e-03	ci right 3.036903e-03	k: 676	n:240000
Cons ci ratio: 3.308936e-03	ci left: 8.525475e-01	ci right 8.553773e-01	k: 204952	n:240000
KS ci ratio: 2.716847e-01	ci left: 7.490401e-04	ci right 9.882791e-04	k: 207	n:240000
INA   240000 perm   66 sec   (3632 perm/sec)   p_kst 8.625000e-04   p_cons 8.539667e-01   p_joint 2.816667e-03

Joint ci ratio: 1.475321e-01	ci left: 2.608208e-03	ci right 3.027450e-03	k: 703	n:250000
Cons ci ratio: 3.243936e-03	ci left: 8.524331e-01	ci right 8.552067e-01	k: 213456	n:250000
KS ci ratio: 2.678504e-01	ci left: 7.414550e-04	ci right 9.743679e-04	k: 213	n:250000
INA   250000 perm   70 sec   (3549 perm/sec)   p_kst 8.520000e-04   p_cons 8.538240e-01   p_joint 2.812000e-03

Joint ci ratio: 1.444852e-01	ci left: 2.619063e-03	ci right 3.030606e-03	k: 733	n:260000
Cons ci ratio: 3.180119e-03	ci left: 8.525249e-01	ci right 8.552441e-01	k: 222011	n:260000
KS ci ratio: 2.653841e-01	ci left: 7.272931e-04	ci right 9.533039e-04	k: 217	n:260000
INA   260000 perm   75 sec   (3479 perm/sec)   p_kst 8.346154e-04   p_cons 8.538885e-01   p_joint 2.819231e-03

Joint ci ratio: 9.832915e-02	ci left: 5.564002e-03	ci right 6.142978e-03	k: 1579	n:270000
Cons ci ratio: 3.122565e-03	ci left: 8.523985e-01	ci right 8.550680e-01	k: 230509	n:270000
KS ci ratio: 2.618069e-01	ci left: 7.211100e-04	ci right 9.416841e-04	k: 223	n:270000
INA   270000 perm   79 sec   (3428 perm/sec)   p_kst 8.259259e-04   p_cons 8.537370e-01   p_joint 5.848148e-03

Joint ci ratio: 9.657269e-02	ci left: 5.567383e-03	ci right 6.135776e-03	k: 1637	n:280000
Cons ci ratio: 3.066138e-03	ci left: 8.524357e-01	ci right 8.550569e-01	k: 239050	n:280000
KS ci ratio: 2.572535e-01	ci left: 7.220691e-04	ci right 9.384784e-04	k: 231	n:280000
INA   280000 perm   83 sec   (3381 perm/sec)   p_kst 8.250000e-04   p_cons 8.537500e-01   p_joint 5.846429e-03

Joint ci ratio: 9.504814e-02	ci left: 5.553781e-03	ci right 6.111336e-03	k: 1690	n:290000
Cons ci ratio: 3.010750e-03	ci left: 8.526300e-01	ci right 8.552043e-01	k: 247637	n:290000
KS ci ratio: 2.518815e-01	ci left: 7.294534e-04	ci right 9.427946e-04	k: 241	n:290000
INA   290000 perm   87 sec   (3333 perm/sec)   p_kst 8.310345e-04   p_cons 8.539207e-01   p_joint 5.827586e-03

Joint ci ratio: 9.557032e-02	ci left: 5.310054e-03	ci right 5.846232e-03	k: 1672	n:300000
Cons ci ratio: 2.958571e-03	ci left: 8.527849e-01	ci right 8.553149e-01	k: 256216	n:300000
KS ci ratio: 2.473243e-01	ci left: 7.332621e-04	ci right 9.432405e-04	k: 250	n:300000
INA   300000 perm   91 sec   (3287 perm/sec)   p_kst 8.333333e-04   p_cons 8.540533e-01   p_joint 5.573333e-03

Joint ci ratio: 1.028457e-01	ci left: 4.424542e-03	ci right 4.907371e-03	k: 1445	n:310000
Cons ci ratio: 2.908823e-03	ci left: 8.529463e-01	ci right 8.554342e-01	k: 264800	n:310000
KS ci ratio: 2.430057e-01	ci left: 7.368575e-04	ci right 9.436254e-04	k: 259	n:310000
INA   310000 perm   95 sec   (3248 perm/sec)   p_kst 8.354839e-04   p_cons 8.541935e-01   p_joint 4.661290e-03

Joint ci ratio: 1.012479e-01	ci left: 4.426356e-03	ci right 4.901433e-03	k: 1491	n:320000
Cons ci ratio: 2.865344e-03	ci left: 8.527624e-01	ci right 8.552124e-01	k: 273277	n:320000
KS ci ratio: 2.397996e-01	ci left: 7.343825e-04	ci right 9.373329e-04	k: 266	n:320000
INA   320000 perm   100 sec   (3211 perm/sec)   p_kst 8.312500e-04   p_cons 8.539906e-01   p_joint 4.659375e-03

Joint ci ratio: 1.284297e-01	ci left: 2.634310e-03	ci right 2.998750e-03	k: 928	n:330000
Cons ci ratio: 2.819912e-03	ci left: 8.529305e-01	ci right 8.553421e-01	k: 281866	n:330000
KS ci ratio: 2.371507e-01	ci left: 7.292238e-04	ci right 9.281954e-04	k: 272	n:330000
INA   330000 perm   104 sec   (3162 perm/sec)   p_kst 8.242424e-04   p_cons 8.541394e-01   p_joint 2.812121e-03

Joint ci ratio: 1.266698e-01	ci left: 2.630861e-03	ci right 2.989462e-03	k: 954	n:340000
Cons ci ratio: 2.778342e-03	ci left: 8.529296e-01	ci right 8.553055e-01	k: 290401	n:340000
KS ci ratio: 2.333354e-01	ci left: 7.326868e-04	ci right 9.289232e-04	k: 281	n:340000
INA   340000 perm   109 sec   (3126 perm/sec)   p_kst 8.264706e-04   p_cons 8.541206e-01   p_joint 2.805882e-03

Joint ci ratio: 9.740932e-02	ci left: 4.381292e-03	ci right 4.832685e-03	k: 1611	n:350000
Cons ci ratio: 2.739029e-03	ci left: 8.528860e-01	ci right 8.552281e-01	k: 298921	n:350000
KS ci ratio: 2.300946e-01	ci left: 7.332833e-04	ci right 9.265641e-04	k: 289	n:350000
INA   350000 perm   113 sec   (3089 perm/sec)   p_kst 8.257143e-04   p_cons 8.540600e-01   p_joint 4.602857e-03

Joint ci ratio: 9.604855e-02	ci left: 4.384276e-03	ci right 4.829312e-03	k: 1657	n:360000
Cons ci ratio: 2.700677e-03	ci left: 8.529064e-01	ci right 8.552157e-01	k: 307463	n:360000
KS ci ratio: 2.254757e-01	ci left: 7.443463e-04	ci right 9.360576e-04	k: 301	n:360000
INA   360000 perm   118 sec   (3049 perm/sec)   p_kst 8.361111e-04   p_cons 8.540639e-01   p_joint 4.602778e-03

Joint ci ratio: 1.408451e-01	ci left: 1.942019e-03	ci right 2.238839e-03	k: 772	n:370000
Cons ci ratio: 2.664412e-03	ci left: 8.528771e-01	ci right 8.551552e-01	k: 315987	n:370000
KS ci ratio: 2.239985e-01	ci left: 7.344306e-04	ci right 9.221778e-04	k: 305	n:370000
INA   370000 perm   123 sec   (3013 perm/sec)   p_kst 8.243243e-04   p_cons 8.540189e-01   p_joint 2.086486e-03

Joint ci ratio: 1.387949e-01	ci left: 1.949322e-03	ci right 2.242564e-03	k: 795	n:380000
Cons ci ratio: 2.629569e-03	ci left: 8.528495e-01	ci right 8.550977e-01	k: 324511	n:380000
KS ci ratio: 2.214799e-01	ci left: 7.324967e-04	ci right 9.173572e-04	k: 312	n:380000
INA   380000 perm   128 sec   (2976 perm/sec)   p_kst 8.210526e-04   p_cons 8.539763e-01   p_joint 2.092105e-03

Joint ci ratio: 1.332131e-01	ci left: 2.067777e-03	ci right 2.365338e-03	k: 863	n:390000
Cons ci ratio: 2.596245e-03	ci left: 8.528056e-01	ci right 8.550251e-01	k: 333028	n:390000
KS ci ratio: 2.187027e-01	ci left: 7.330969e-04	ci right 9.154770e-04	k: 320	n:390000
INA   390000 perm   133 sec   (2935 perm/sec)   p_kst 8.205128e-04   p_cons 8.539179e-01   p_joint 2.212821e-03

Joint ci ratio: 1.505301e-01	ci left: 1.565082e-03	ci right 1.822222e-03	k: 676	n:400000
Cons ci ratio: 2.564053e-03	ci left: 8.527740e-01	ci right 8.549658e-01	k: 341549	n:400000
KS ci ratio: 2.156996e-01	ci left: 7.360456e-04	ci right 9.163120e-04	k: 329	n:400000
INA   400000 perm   138 sec   (2902 perm/sec)   p_kst 8.225000e-04   p_cons 8.538725e-01   p_joint 1.690000e-03

Joint ci ratio: 1.325304e-01	ci left: 1.988126e-03	ci right 2.272643e-03	k: 872	n:410000
Cons ci ratio: 2.531643e-03	ci left: 8.528812e-01	ci right 8.550455e-01	k: 350126	n:410000
KS ci ratio: 2.125034e-01	ci left: 7.411760e-04	ci right 9.196587e-04	k: 339	n:410000
INA   410000 perm   143 sec   (2870 perm/sec)   p_kst 8.268293e-04   p_cons 8.539659e-01   p_joint 2.126829e-03

Joint ci ratio: 1.312592e-01	ci left: 1.979929e-03	ci right 2.260344e-03	k: 889	n:420000
Cons ci ratio: 2.500264e-03	ci left: 8.530001e-01	ci right 8.551379e-01	k: 358710	n:420000
KS ci ratio: 2.112654e-01	ci left: 7.325471e-04	ci right 9.077910e-04	k: 343	n:420000
INA   420000 perm   148 sec   (2837 perm/sec)   p_kst 8.166667e-04   p_cons 8.540714e-01   p_joint 2.116667e-03

Joint ci ratio: 8.877494e-02	ci left: 4.313502e-03	ci right 4.716475e-03	k: 1940	n:430000
Cons ci ratio: 2.593268e-03	ci left: 8.405239e-01	ci right 8.427087e-01	k: 361896	n:430000
KS ci ratio: 2.082596e-01	ci left: 7.375456e-04	ci right 9.111550e-04	k: 353	n:430000
INA   430000 perm   153 sec   (2809 perm/sec)   p_kst 8.209302e-04   p_cons 8.416186e-01   p_joint 4.511628e-03

Joint ci ratio: 8.654612e-02	ci left: 4.439994e-03	ci right 4.843845e-03	k: 2041	n:440000
Cons ci ratio: 2.562059e-03	ci left: 8.407001e-01	ci right 8.428590e-01	k: 370384	n:440000
KS ci ratio: 2.070939e-01	ci left: 7.294010e-04	ci right 9.000104e-04	k: 357	n:440000
INA   440000 perm   158 sec   (2779 perm/sec)   p_kst 8.113636e-04   p_cons 8.417818e-01   p_joint 4.638636e-03

Joint ci ratio: 8.550527e-02	ci left: 4.450049e-03	ci right 4.849704e-03	k: 2091	n:450000
Cons ci ratio: 2.533935e-03	ci left: 8.406592e-01	ci right 8.427942e-01	k: 378778	n:450000
KS ci ratio: 2.048181e-01	ci left: 7.300530e-04	ci right 8.987035e-04	k: 365	n:450000
INA   450000 perm   164 sec   (2748 perm/sec)   p_kst 8.111111e-04   p_cons 8.417289e-01   p_joint 4.646667e-03

Joint ci ratio: 8.484000e-02	ci left: 4.423517e-03	ci right 4.817545e-03	k: 2124	n:460000
Cons ci ratio: 2.507004e-03	ci left: 8.405896e-01	ci right 8.427017e-01	k: 387158	n:460000
KS ci ratio: 2.031601e-01	ci left: 7.265594e-04	ci right 8.928755e-04	k: 371	n:460000
INA   460000 perm   169 sec   (2722 perm/sec)   p_kst 8.065217e-04   p_cons 8.416478e-01   p_joint 4.617391e-03

Joint ci ratio: 8.395583e-02	ci left: 4.423124e-03	ci right 4.812809e-03	k: 2169	n:470000
Cons ci ratio: 2.478833e-03	ci left: 8.407471e-01	ci right 8.428359e-01	k: 395643	n:470000
KS ci ratio: 2.002208e-01	ci left: 7.333233e-04	ci right 8.984624e-04	k: 382	n:470000
INA   470000 perm   175 sec   (2692 perm/sec)   p_kst 8.127660e-04   p_cons 8.417936e-01   p_joint 4.614894e-03

Joint ci ratio: 8.287350e-02	ci left: 4.447250e-03	ci right 4.833766e-03	k: 2226	n:480000
Cons ci ratio: 2.452625e-03	ci left: 8.407854e-01	ci right 8.428521e-01	k: 404074	n:480000
KS ci ratio: 1.961637e-01	ci left: 7.497258e-04	ci right 9.147288e-04	k: 398	n:480000
INA   480000 perm   180 sec   (2660 perm/sec)   p_kst 8.291667e-04   p_cons 8.418208e-01   p_joint 4.637500e-03

Joint ci ratio: 8.186800e-02	ci left: 4.466425e-03	ci right 4.849673e-03	k: 2281	n:490000
Cons ci ratio: 2.428422e-03	ci left: 8.406913e-01	ci right 8.427373e-01	k: 412441	n:490000
KS ci ratio: 1.930431e-01	ci left: 7.596637e-04	ci right 9.238820e-04	k: 411	n:490000
INA   490000 perm   186 sec   (2632 perm/sec)   p_kst 8.387755e-04   p_cons 8.417163e-01   p_joint 4.655102e-03

Joint ci ratio: 1.164810e-01	ci left: 2.128329e-03	ci right 2.393492e-03	k: 1129	n:500000
Cons ci ratio: 2.403765e-03	ci left: 8.407294e-01	ci right 8.427547e-01	k: 420872	n:500000
KS ci ratio: 1.914241e-01	ci left: 7.577966e-04	ci right 9.200774e-04	k: 418	n:500000
INA   500000 perm   192 sec   (2606 perm/sec)   p_kst 8.360000e-04   p_cons 8.417440e-01   p_joint 2.258000e-03

Joint ci ratio: 1.156152e-01	ci left: 2.118962e-03	ci right 2.380862e-03	k: 1146	n:510000
Cons ci ratio: 2.381123e-03	ci left: 8.406225e-01	ci right 8.426285e-01	k: 429230	n:510000
KS ci ratio: 1.898451e-01	ci left: 7.560082e-04	ci right 9.164165e-04	k: 425	n:510000
INA   510000 perm   198 sec   (2580 perm/sec)   p_kst 8.333333e-04   p_cons 8.416275e-01   p_joint 2.247059e-03

Joint ci ratio: 1.143263e-01	ci left: 2.126775e-03	ci right 2.386513e-03	k: 1172	n:520000
Cons ci ratio: 2.359159e-03	ci left: 8.405141e-01	ci right 8.425013e-01	k: 437585	n:520000
KS ci ratio: 1.870122e-01	ci left: 7.652907e-04	ci right 9.249706e-04	k: 438	n:520000
INA   520000 perm   203 sec   (2557 perm/sec)   p_kst 8.423077e-04   p_cons 8.415096e-01   p_joint 2.253846e-03

Joint ci ratio: 1.132217e-01	ci left: 2.128809e-03	ci right 2.386115e-03	k: 1195	n:530000
Cons ci ratio: 2.335988e-03	ci left: 8.406161e-01	ci right 8.425839e-01	k: 446049	n:530000
KS ci ratio: 1.857476e-01	ci left: 7.616437e-04	ci right 9.193669e-04	k: 444	n:530000
INA   530000 perm   209 sec   (2534 perm/sec)   p_kst 8.377358e-04   p_cons 8.416019e-01   p_joint 2.254717e-03

Joint ci ratio: 1.120563e-01	ci left: 2.134379e-03	ci right 2.389527e-03	k: 1220	n:540000
Cons ci ratio: 2.313985e-03	ci left: 8.406568e-01	ci right 8.426062e-01	k: 454482	n:540000
KS ci ratio: 1.847134e-01	ci left: 7.563689e-04	ci right 9.120299e-04	k: 449	n:540000
INA   540000 perm   215 sec   (2512 perm/sec)   p_kst 8.314815e-04   p_cons 8.416333e-01   p_joint 2.259259e-03

Joint ci ratio: 1.111949e-01	ci left: 2.129152e-03	ci right 2.381591e-03	k: 1239	n:550000
Cons ci ratio: 2.292122e-03	ci left: 8.407508e-01	ci right 8.426819e-01	k: 462945	n:550000
KS ci ratio: 1.834945e-01	ci left: 7.530229e-04	ci right 9.068590e-04	k: 455	n:550000
INA   550000 perm   221 sec   (2489 perm/sec)   p_kst 8.272727e-04   p_cons 8.417182e-01   p_joint 2.252727e-03

Joint ci ratio: 1.100904e-01	ci left: 2.134539e-03	ci right 2.384940e-03	k: 1264	n:560000
Cons ci ratio: 2.271598e-03	ci left: 8.407556e-01	ci right 8.426694e-01	k: 471360	n:560000
KS ci ratio: 1.819059e-01	ci left: 7.532085e-04	ci right 9.056035e-04	k: 463	n:560000
INA   560000 perm   228 sec   (2458 perm/sec)   p_kst 8.267857e-04   p_cons 8.417143e-01   p_joint 2.257143e-03

Joint ci ratio: 1.093158e-01	ci left: 2.127803e-03	ci right 2.375545e-03	k: 1282	n:570000
Cons ci ratio: 2.250266e-03	ci left: 8.409204e-01	ci right 8.428165e-01	k: 479866	n:570000
KS ci ratio: 1.815161e-01	ci left: 7.433431e-04	ci right 8.933844e-04	k: 465	n:570000
INA   570000 perm   234 sec   (2436 perm/sec)   p_kst 8.157895e-04   p_cons 8.418702e-01   p_joint 2.249123e-03

Joint ci ratio: 1.223917e-01	ci left: 1.657439e-03	ci right 1.875172e-03	k: 1023	n:580000
Cons ci ratio: 2.230677e-03	ci left: 8.409412e-01	ci right 8.428209e-01	k: 488292	n:580000
KS ci ratio: 1.792226e-01	ci left: 7.502827e-04	ci right 8.996036e-04	k: 477	n:580000
INA   580000 perm   241 sec   (2412 perm/sec)   p_kst 8.224138e-04   p_cons 8.418828e-01   p_joint 1.763793e-03

Joint ci ratio: 1.210973e-01	ci left: 1.665500e-03	ci right 1.881812e-03	k: 1045	n:590000
Cons ci ratio: 2.211000e-03	ci left: 8.410328e-01	ci right 8.428960e-01	k: 496760	n:590000
KS ci ratio: 1.775587e-01	ci left: 7.521392e-04	ci right 9.002907e-04	k: 486	n:590000
INA   590000 perm   247 sec   (2390 perm/sec)   p_kst 8.237288e-04   p_cons 8.419661e-01   p_joint 1.771186e-03

Joint ci ratio: 1.203522e-01	ci left: 1.658753e-03	ci right 1.872770e-03	k: 1058	n:600000
Cons ci ratio: 2.192026e-03	ci left: 8.410980e-01	ci right 8.429454e-01	k: 505214	n:600000
KS ci ratio: 1.764752e-01	ci left: 7.491604e-04	ci right 8.957286e-04	k: 492	n:600000
INA   600000 perm   253 sec   (2370 perm/sec)   p_kst 8.200000e-04   p_cons 8.420233e-01   p_joint 1.763333e-03

Joint ci ratio: 1.191208e-01	ci left: 1.666547e-03	ci right 1.879214e-03	k: 1080	n:610000
Cons ci ratio: 2.173451e-03	ci left: 8.411710e-01	ci right 8.430028e-01	k: 513674	n:610000
KS ci ratio: 1.750606e-01	ci left: 7.494168e-04	ci right 8.947357e-04	k: 500	n:610000
INA   610000 perm   260 sec   (2347 perm/sec)   p_kst 8.196721e-04   p_cons 8.420885e-01   p_joint 1.770492e-03

Joint ci ratio: 1.184114e-01	ci left: 1.660011e-03	ci right 1.870494e-03	k: 1093	n:620000
Cons ci ratio: 2.155654e-03	ci left: 8.412029e-01	ci right 8.430197e-01	k: 522110	n:620000
KS ci ratio: 1.738505e-01	ci left: 7.481268e-04	ci right 8.920874e-04	k: 507	n:620000
INA   620000 perm   267 sec   (2326 perm/sec)   p_kst 8.177419e-04   p_cons 8.421129e-01   p_joint 1.762903e-03

Joint ci ratio: 1.176081e-01	ci left: 1.656768e-03	ci right 1.865316e-03	k: 1108	n:630000
Cons ci ratio: 2.138747e-03	ci left: 8.411765e-01	ci right 8.429791e-01	k: 530510	n:630000
KS ci ratio: 1.728331e-01	ci left: 7.453622e-04	ci right 8.878640e-04	k: 513	n:630000
INA   630000 perm   273 sec   (2306 perm/sec)   p_kst 8.142857e-04   p_cons 8.420794e-01   p_joint 1.758730e-03

Joint ci ratio: 1.165616e-01	ci left: 1.661216e-03	ci right 1.868335e-03	k: 1128	n:640000
Cons ci ratio: 2.121259e-03	ci left: 8.412732e-01	ci right 8.430612e-01	k: 538988	n:640000
KS ci ratio: 1.703642e-01	ci left: 7.561473e-04	ci right 8.984337e-04	k: 528	n:640000
INA   640000 perm   280 sec   (2287 perm/sec)   p_kst 8.250000e-04   p_cons 8.421688e-01   p_joint 1.762500e-03

Joint ci ratio: 1.023704e-01	ci left: 2.135520e-03	ci right 2.367413e-03	k: 1462	n:650000
Cons ci ratio: 2.103864e-03	ci left: 8.414086e-01	ci right 8.431822e-01	k: 547493	n:650000
KS ci ratio: 1.684637e-01	ci left: 7.621932e-04	ci right 9.038550e-04	k: 540	n:650000
INA   650000 perm   287 sec   (2265 perm/sec)   p_kst 8.307692e-04   p_cons 8.422969e-01   p_joint 2.249231e-03

Joint ci ratio: 1.016779e-01	ci left: 2.132694e-03	ci right 2.362619e-03	k: 1482	n:660000
Cons ci ratio: 2.087876e-03	ci left: 8.414139e-01	ci right 8.431740e-01	k: 555915	n:660000
KS ci ratio: 1.675375e-01	ci left: 7.593534e-04	ci right 8.996332e-04	k: 546	n:660000
INA   660000 perm   294 sec   (2247 perm/sec)   p_kst 8.272727e-04   p_cons 8.422955e-01   p_joint 2.245455e-03

Joint ci ratio: 1.006976e-01	ci left: 2.143051e-03	ci right 2.371734e-03	k: 1511	n:670000
Cons ci ratio: 2.073039e-03	ci left: 8.413174e-01	ci right 8.430647e-01	k: 564269	n:670000
KS ci ratio: 1.657290e-01	ci left: 7.651835e-04	ci right 9.048622e-04	k: 558	n:670000
INA   670000 perm   301 sec   (2228 perm/sec)   p_kst 8.328358e-04   p_cons 8.421925e-01   p_joint 2.255224e-03

Joint ci ratio: 9.981009e-02	ci left: 2.150246e-03	ci right 2.377557e-03	k: 1538	n:680000
Cons ci ratio: 2.058478e-03	ci left: 8.412282e-01	ci right 8.429630e-01	k: 572626	n:680000
KS ci ratio: 1.648470e-01	ci left: 7.623893e-04	ci right 9.007438e-04	k: 564	n:680000
INA   680000 perm   308 sec   (2211 perm/sec)   p_kst 8.294118e-04   p_cons 8.420971e-01   p_joint 2.261765e-03

Joint ci ratio: 9.916799e-02	ci left: 2.147347e-03	ci right 2.372806e-03	k: 1558	n:690000
Cons ci ratio: 2.043886e-03	ci left: 8.411852e-01	ci right 8.429076e-01	k: 581013	n:690000
KS ci ratio: 1.642671e-01	ci left: 7.568983e-04	ci right 8.937254e-04	k: 568	n:690000
INA   690000 perm   315 sec   (2193 perm/sec)   p_kst 8.231884e-04   p_cons 8.420478e-01   p_joint 2.257971e-03

Joint ci ratio: 9.856942e-02	ci left: 2.143143e-03	ci right 2.366723e-03	k: 1577	n:700000
Cons ci ratio: 2.029032e-03	ci left: 8.412179e-01	ci right 8.429279e-01	k: 589452	n:700000
KS ci ratio: 1.629831e-01	ci left: 7.584162e-04	ci right 8.943410e-04	k: 577	n:700000
INA   700000 perm   322 sec   (2176 perm/sec)   p_kst 8.242857e-04   p_cons 8.420743e-01   p_joint 2.252857e-03

Joint ci ratio: 1.107766e-01	ci left: 1.663015e-03	ci right 1.859396e-03	k: 1249	n:710000
Cons ci ratio: 2.014295e-03	ci left: 8.412765e-01	ci right 8.429742e-01	k: 597910	n:710000
KS ci ratio: 1.622830e-01	ci left: 7.544898e-04	ci right 8.890734e-04	k: 582	n:710000
INA   710000 perm   329 sec   (2160 perm/sec)   p_kst 8.197183e-04   p_cons 8.421268e-01   p_joint 1.759155e-03

Joint ci ratio: 1.101617e-01	ci left: 1.658824e-03	ci right 1.853553e-03	k: 1263	n:720000
Cons ci ratio: 2.000282e-03	ci left: 8.412793e-01	ci right 8.429652e-01	k: 606329	n:720000
KS ci ratio: 1.615919e-01	ci left: 7.506737e-04	ci right 8.839509e-04	k: 587	n:720000
INA   720000 perm   336 sec   (2141 perm/sec)   p_kst 8.152778e-04   p_cons 8.421236e-01   p_joint 1.754167e-03

Joint ci ratio: 1.089607e-01	ci left: 1.673406e-03	ci right 1.867568e-03	k: 1291	n:730000
Cons ci ratio: 1.986741e-03	ci left: 8.412574e-01	ci right 8.429317e-01	k: 614730	n:730000
KS ci ratio: 1.599674e-01	ci left: 7.561676e-04	ci right 8.889410e-04	k: 599	n:730000
INA   730000 perm   344 sec   (2123 perm/sec)   p_kst 8.205479e-04   p_cons 8.420959e-01   p_joint 1.768493e-03

Joint ci ratio: 1.081268e-01	ci left: 1.677086e-03	ci right 1.870091e-03	k: 1311	n:740000
Cons ci ratio: 1.973401e-03	ci left: 8.412455e-01	ci right 8.429086e-01	k: 623138	n:740000
KS ci ratio: 1.583910e-01	ci left: 7.615196e-04	ci right 8.937897e-04	k: 611	n:740000
INA   740000 perm   352 sec   (2104 perm/sec)   p_kst 8.256757e-04   p_cons 8.420784e-01   p_joint 1.771622e-03

Joint ci ratio: 1.073522e-01	ci left: 1.679376e-03	ci right 1.871172e-03	k: 1330	n:750000
Cons ci ratio: 1.960621e-03	ci left: 8.411939e-01	ci right 8.428461e-01	k: 631516	n:750000
KS ci ratio: 1.571124e-01	ci left: 7.641731e-04	ci right 8.957317e-04	k: 621	n:750000
INA   750000 perm   359 sec   (2086 perm/sec)   p_kst 8.280000e-04   p_cons 8.420213e-01   p_joint 1.773333e-03

Joint ci ratio: 1.066336e-01	ci left: 1.680329e-03	ci right 1.870869e-03	k: 1348	n:760000
Cons ci ratio: 1.947952e-03	ci left: 8.411622e-01	ci right 8.428036e-01	k: 639908	n:760000
KS ci ratio: 1.564850e-01	ci left: 7.604389e-04	ci right 8.907827e-04	k: 626	n:760000
INA   760000 perm   367 sec   (2069 perm/sec)   p_kst 8.236842e-04   p_cons 8.419842e-01   p_joint 1.773684e-03

Joint ci ratio: 8.313365e-02	ci left: 2.759495e-03	ci right 3.000113e-03	k: 2216	n:770000
Cons ci ratio: 1.934853e-03	ci left: 8.412237e-01	ci right 8.428542e-01	k: 648371	n:770000
KS ci ratio: 1.553738e-01	ci left: 7.617953e-04	ci right 8.913581e-04	k: 635	n:770000
INA   770000 perm   376 sec   (2050 perm/sec)   p_kst 8.246753e-04   p_cons 8.420403e-01   p_joint 2.877922e-03

Joint ci ratio: 8.265056e-02	ci left: 2.756759e-03	ci right 2.995674e-03	k: 2242	n:780000
Cons ci ratio: 1.921858e-03	ci left: 8.413056e-01	ci right 8.429252e-01	k: 656851	n:780000
KS ci ratio: 1.541664e-01	ci left: 7.643528e-04	ci right 8.932470e-04	k: 645	n:780000
INA   780000 perm   384 sec   (2033 perm/sec)   p_kst 8.269231e-04   p_cons 8.421167e-01   p_joint 2.874359e-03

Joint ci ratio: 8.212138e-02	ci left: 2.757816e-03	ci right 2.995219e-03	k: 2271	n:790000
Cons ci ratio: 1.910212e-03	ci left: 8.412331e-01	ci right 8.428428e-01	k: 665211	n:790000
KS ci ratio: 1.529866e-01	ci left: 7.668493e-04	ci right 8.950843e-04	k: 655	n:790000
INA   790000 perm   392 sec   (2017 perm/sec)   p_kst 8.291139e-04   p_cons 8.420392e-01   p_joint 2.874684e-03

Joint ci ratio: 8.165563e-02	ci left: 2.755178e-03	ci right 2.990945e-03	k: 2297	n:800000
Cons ci ratio: 1.898480e-03	ci left: 8.412039e-01	ci right 8.428036e-01	k: 673604	n:800000
KS ci ratio: 1.518336e-01	ci left: 7.692871e-04	ci right 8.968720e-04	k: 665	n:800000
INA   800000 perm   400 sec   (2000 perm/sec)   p_kst 8.312500e-04   p_cons 8.420050e-01   p_joint 2.871250e-03

Joint ci ratio: 8.130304e-02	ci left: 2.745351e-03	ci right 2.979214e-03	k: 2317	n:810000
Cons ci ratio: 1.887171e-03	ci left: 8.411457e-01	ci right 8.427358e-01	k: 681973	n:810000
KS ci ratio: 1.512671e-01	ci left: 7.657283e-04	ci right 8.922064e-04	k: 670	n:810000
INA   810000 perm   408 sec   (1984 perm/sec)   p_kst 8.271605e-04   p_cons 8.419420e-01   p_joint 2.860494e-03

Joint ci ratio: 8.074742e-02	ci left: 2.750105e-03	ci right 2.982697e-03	k: 2349	n:820000
Cons ci ratio: 1.875779e-03	ci left: 8.411293e-01	ci right 8.427097e-01	k: 690375	n:820000
KS ci ratio: 1.499321e-01	ci left: 7.704730e-04	ci right 8.965108e-04	k: 682	n:820000
INA   820000 perm   416 sec   (1969 perm/sec)   p_kst 8.317073e-04   p_cons 8.419207e-01   p_joint 2.864634e-03

Joint ci ratio: 8.006831e-02	ci left: 2.764196e-03	ci right 2.995922e-03	k: 2389	n:830000
Cons ci ratio: 1.864396e-03	ci left: 8.411411e-01	ci right 8.427119e-01	k: 698800	n:830000
KS ci ratio: 1.486317e-01	ci left: 7.751082e-04	ci right 9.007068e-04	k: 694	n:830000
INA   830000 perm   425 sec   (1955 perm/sec)   p_kst 8.361446e-04   p_cons 8.419277e-01   p_joint 2.878313e-03

Joint ci ratio: 7.966953e-02	ci left: 2.759289e-03	ci right 2.989398e-03	k: 2413	n:840000
Cons ci ratio: 1.852877e-03	ci left: 8.412015e-01	ci right 8.427628e-01	k: 707266	n:840000
KS ci ratio: 1.478889e-01	ci left: 7.739049e-04	ci right 8.986264e-04	k: 701	n:840000
INA   840000 perm   433 sec   (1941 perm/sec)   p_kst 8.345238e-04   p_cons 8.419833e-01   p_joint 2.872619e-03

Joint ci ratio: 7.922777e-02	ci left: 2.757961e-03	ci right 2.986625e-03	k: 2440	n:850000
Cons ci ratio: 1.841773e-03	ci left: 8.412311e-01	ci right 8.427830e-01	k: 715707	n:850000
KS ci ratio: 1.472612e-01	ci left: 7.715982e-04	ci right 8.953737e-04	k: 707	n:850000
INA   850000 perm   441 sec   (1925 perm/sec)   p_kst 8.317647e-04   p_cons 8.420082e-01   p_joint 2.870588e-03

Joint ci ratio: 7.860187e-02	ci left: 2.770346e-03	ci right 2.998139e-03	k: 2479	n:860000
Cons ci ratio: 1.831179e-03	ci left: 8.412146e-01	ci right 8.427575e-01	k: 724109	n:860000
KS ci ratio: 1.458260e-01	ci left: 7.783085e-04	ci right 9.018376e-04	k: 721	n:860000
INA   860000 perm   450 sec   (1909 perm/sec)   p_kst 8.383721e-04   p_cons 8.419872e-01   p_joint 2.882558e-03

Joint ci ratio: 7.809947e-02	ci left: 2.774564e-03	ci right 3.001180e-03	k: 2511	n:870000
Cons ci ratio: 1.820781e-03	ci left: 8.411962e-01	ci right 8.427303e-01	k: 732509	n:870000
KS ci ratio: 1.452240e-01	ci left: 7.760078e-04	ci right 8.986193e-04	k: 727	n:870000
INA   870000 perm   459 sec   (1896 perm/sec)   p_kst 8.356322e-04   p_cons 8.419644e-01   p_joint 2.886207e-03

Joint ci ratio: 9.840497e-02	ci left: 1.711404e-03	ci right 1.889628e-03	k: 1583	n:880000
Cons ci ratio: 1.810635e-03	ci left: 8.411668e-01	ci right 8.426923e-01	k: 740899	n:880000
KS ci ratio: 1.446294e-01	ci left: 7.737604e-04	ci right 8.954730e-04	k: 733	n:880000
INA   880000 perm   468 sec   (1880 perm/sec)   p_kst 8.329545e-04   p_cons 8.419307e-01   p_joint 1.798864e-03

Joint ci ratio: 9.785057e-02	ci left: 1.711903e-03	ci right 1.889117e-03	k: 1601	n:890000
Cons ci ratio: 1.800528e-03	ci left: 8.411572e-01	ci right 8.426742e-01	k: 749306	n:890000
KS ci ratio: 1.438476e-01	ci left: 7.737309e-04	ci right 8.947245e-04	k: 741	n:890000
INA   890000 perm   477 sec   (1866 perm/sec)   p_kst 8.325843e-04   p_cons 8.419169e-01   p_joint 1.798876e-03

Joint ci ratio: 7.691484e-02	ci left: 2.767065e-03	ci right 2.989487e-03	k: 2589	n:900000
Cons ci ratio: 1.790453e-03	ci left: 8.411680e-01	ci right 8.426765e-01	k: 757731	n:900000
KS ci ratio: 1.429831e-01	ci left: 7.747751e-04	ci right 8.951416e-04	k: 750	n:900000
INA   900000 perm   486 sec   (1854 perm/sec)   p_kst 8.333333e-04   p_cons 8.419233e-01   p_joint 2.876667e-03

Joint ci ratio: 7.648781e-02	ci left: 2.767915e-03	ci right 2.989115e-03	k: 2618	n:910000
Cons ci ratio: 1.780090e-03	ci left: 8.412468e-01	ci right 8.427467e-01	k: 766218	n:910000
KS ci ratio: 1.420404e-01	ci left: 7.768583e-04	ci right 8.966854e-04	k: 760	n:910000
INA   910000 perm   494 sec   (1841 perm/sec)   p_kst 8.351648e-04   p_cons 8.419978e-01   p_joint 2.876923e-03

Joint ci ratio: 7.613994e-02	ci left: 2.763418e-03	ci right 2.983209e-03	k: 2642	n:920000
Cons ci ratio: 1.770497e-03	ci left: 8.412346e-01	ci right 8.427263e-01	k: 774623	n:920000
KS ci ratio: 1.412078e-01	ci left: 7.778502e-04	ci right 8.970678e-04	k: 769	n:920000
INA   920000 perm   503 sec   (1829 perm/sec)   p_kst 8.358696e-04   p_cons 8.419815e-01   p_joint 2.871739e-03

Joint ci ratio: 9.586666e-02	ci left: 1.708571e-03	ci right 1.881653e-03	k: 1668	n:930000
Cons ci ratio: 1.760845e-03	ci left: 8.412549e-01	ci right 8.427386e-01	k: 783058	n:930000
KS ci ratio: 1.403897e-01	ci left: 7.788228e-04	ci right 8.974400e-04	k: 778	n:930000
INA   930000 perm   512 sec   (1817 perm/sec)   p_kst 8.365591e-04   p_cons 8.419978e-01   p_joint 1.793548e-03

Joint ci ratio: 9.541053e-02	ci left: 1.707009e-03	ci right 1.879063e-03	k: 1684	n:940000
Cons ci ratio: 1.751601e-03	ci left: 8.412366e-01	ci right 8.427124e-01	k: 791457	n:940000
KS ci ratio: 1.400309e-01	ci left: 7.746433e-04	ci right 8.922974e-04	k: 782	n:940000
INA   940000 perm   521 sec   (1803 perm/sec)   p_kst 8.319149e-04   p_cons 8.419755e-01   p_joint 1.791489e-03

Joint ci ratio: 8.370694e-02	ci left: 2.206728e-03	ci right 2.400537e-03	k: 2187	n:950000
Cons ci ratio: 1.742225e-03	ci left: 8.412608e-01	ci right 8.427287e-01	k: 799896	n:950000
KS ci ratio: 1.387081e-01	ci left: 7.817283e-04	ci right 8.992442e-04	k: 797	n:950000
INA   950000 perm   531 sec   (1790 perm/sec)   p_kst 8.389474e-04   p_cons 8.419958e-01   p_joint 2.302105e-03

Joint ci ratio: 5.820138e-02	ci left: 4.566212e-03	ci right 4.840956e-03	k: 4514	n:960000
Cons ci ratio: 1.733147e-03	ci left: 8.412615e-01	ci right 8.427218e-01	k: 808313	n:960000
KS ci ratio: 1.378470e-01	ci left: 7.836417e-04	ci right 9.006539e-04	k: 807	n:960000
INA   960000 perm   540 sec   (1777 perm/sec)   p_kst 8.406250e-04   p_cons 8.419927e-01   p_joint 4.702083e-03

Joint ci ratio: 5.796466e-02	ci left: 4.556727e-03	ci right 4.829748e-03	k: 4551	n:970000
Cons ci ratio: 1.724543e-03	ci left: 8.412106e-01	ci right 8.426636e-01	k: 816680	n:970000
KS ci ratio: 1.373382e-01	ci left: 7.815355e-04	ci right 8.977672e-04	k: 813	n:970000
INA   970000 perm   550 sec   (1764 perm/sec)   p_kst 8.381443e-04   p_cons 8.419381e-01   p_joint 4.691753e-03

Joint ci ratio: 5.775610e-02	ci left: 4.543416e-03	ci right 4.814627e-03	k: 4584	n:980000
Cons ci ratio: 1.715593e-03	ci left: 8.412344e-01	ci right 8.426799e-01	k: 825119	n:980000
KS ci ratio: 1.371702e-01	ci left: 7.755312e-04	ci right 8.907174e-04	k: 815	n:980000
INA   980000 perm   559 sec   (1752 perm/sec)   p_kst 8.316327e-04   p_cons 8.419582e-01   p_joint 4.677551e-03

Joint ci ratio: 5.748727e-02	ci left: 4.540331e-03	ci right 4.810055e-03	k: 4627	n:990000
Cons ci ratio: 1.706781e-03	ci left: 8.412578e-01	ci right 8.426958e-01	k: 833558	n:990000
KS ci ratio: 1.363373e-01	ci left: 7.774530e-04	ci right 8.921665e-04	k: 825	n:990000
INA   990000 perm   569 sec   (1741 perm/sec)   p_kst 8.333333e-04   p_cons 8.419778e-01   p_joint 4.673737e-03

Joint ci ratio: 5.717913e-02	ci left: 4.544211e-03	ci right 4.812670e-03	k: 4677	n:1000000
Cons ci ratio: 1.698434e-03	ci left: 8.412285e-01	ci right 8.426595e-01	k: 841945	n:1000000
KS ci ratio: 1.356818e-01	ci left: 7.774063e-04	ci right 8.915169e-04	k: 833	n:1000000
INA   1000000 perm   578 sec   (1730 perm/sec)   p_kst 8.330000e-04   p_cons 8.419450e-01   p_joint 4.677000e-03

Joint ci ratio: 5.694855e-02	ci left: 4.536305e-03	ci right 4.803181e-03	k: 4715	n:1010000
Cons ci ratio: 1.690121e-03	ci left: 8.412138e-01	ci right 8.426377e-01	k: 850346	n:1010000
KS ci ratio: 1.353579e-01	ci left: 7.735352e-04	ci right 8.867847e-04	k: 837	n:1010000
INA   1010000 perm   588 sec   (1718 perm/sec)   p_kst 8.287129e-04   p_cons 8.419267e-01   p_joint 4.668317e-03

Joint ci ratio: 8.078741e-02	ci left: 2.209884e-03	ci right 2.396882e-03	k: 2348	n:1020000
Cons ci ratio: 1.681601e-03	ci left: 8.412514e-01	ci right 8.426682e-01	k: 858800	n:1020000
KS ci ratio: 1.346368e-01	ci left: 7.744771e-04	ci right 8.872121e-04	k: 846	n:1020000
INA   1020000 perm   598 sec   (1707 perm/sec)   p_kst 8.294118e-04   p_cons 8.419608e-01   p_joint 2.301961e-03

Joint ci ratio: 8.046281e-02	ci left: 2.206503e-03	ci right 2.392430e-03	k: 2367	n:1030000
Cons ci ratio: 1.673348e-03	ci left: 8.412660e-01	ci right 8.426758e-01	k: 867231	n:1030000
KS ci ratio: 1.341626e-01	ci left: 7.725872e-04	ci right 8.846194e-04	k: 852	n:1030000
INA   1030000 perm   607 sec   (1696 perm/sec)   p_kst 8.271845e-04   p_cons 8.419718e-01   p_joint 2.298058e-03

Joint ci ratio: 8.012527e-02	ci left: 2.204131e-03	ci right 2.389043e-03	k: 2387	n:1040000
Cons ci ratio: 1.664861e-03	ci left: 8.413371e-01	ci right 8.427399e-01	k: 875721	n:1040000
KS ci ratio: 1.333829e-01	ci left: 7.744522e-04	ci right 8.860504e-04	k: 862	n:1040000
INA   1040000 perm   617 sec   (1686 perm/sec)   p_kst 8.288462e-04   p_cons 8.420394e-01   p_joint 2.295192e-03

Joint ci ratio: 7.980856e-02	ci left: 2.200873e-03	ci right 2.384747e-03	k: 2406	n:1050000
Cons ci ratio: 1.657083e-03	ci left: 8.413133e-01	ci right 8.427095e-01	k: 884113	n:1050000
KS ci ratio: 1.327690e-01	ci left: 7.744418e-04	ci right 8.854844e-04	k: 870	n:1050000
INA   1050000 perm   627 sec   (1675 perm/sec)   p_kst 8.285714e-04   p_cons 8.420124e-01   p_joint 2.291429e-03

Joint ci ratio: 7.947915e-02	ci left: 2.198602e-03	ci right 2.381493e-03	k: 2426	n:1060000
Cons ci ratio: 1.649272e-03	ci left: 8.413127e-01	ci right 8.427024e-01	k: 892529	n:1060000
KS ci ratio: 1.325412e-01	ci left: 7.698719e-04	ci right 8.800550e-04	k: 873	n:1060000
INA   1060000 perm   637 sec   (1664 perm/sec)   p_kst 8.235849e-04   p_cons 8.420085e-01   p_joint 2.288679e-03

Joint ci ratio: 7.897607e-02	ci left: 2.206452e-03	ci right 2.388782e-03	k: 2457	n:1070000
Cons ci ratio: 1.641674e-03	ci left: 8.412953e-01	ci right 8.426785e-01	k: 900927	n:1070000
KS ci ratio: 1.318640e-01	ci left: 7.708099e-04	ci right 8.805194e-04	k: 882	n:1070000
INA   1070000 perm   648 sec   (1652 perm/sec)   p_kst 8.242991e-04   p_cons 8.419879e-01   p_joint 2.296262e-03

Joint ci ratio: 7.872053e-02	ci left: 2.200545e-03	ci right 2.381771e-03	k: 2473	n:1080000
Cons ci ratio: 1.634243e-03	ci left: 8.412681e-01	ci right 8.426449e-01	k: 909314	n:1080000
KS ci ratio: 1.311970e-01	ci left: 7.717319e-04	ci right 8.809738e-04	k: 891	n:1080000
INA   1080000 perm   658 sec   (1642 perm/sec)   p_kst 8.250000e-04   p_cons 8.419574e-01   p_joint 2.289815e-03

Joint ci ratio: 7.816910e-02	ci left: 2.211837e-03	ci right 2.392659e-03	k: 2508	n:1090000
Cons ci ratio: 1.626671e-03	ci left: 8.412808e-01	ci right 8.426513e-01	k: 917744	n:1090000
KS ci ratio: 1.301072e-01	ci left: 7.779637e-04	ci right 8.871023e-04	k: 906	n:1090000
INA   1090000 perm   668 sec   (1631 perm/sec)   p_kst 8.311927e-04   p_cons 8.419670e-01   p_joint 2.300917e-03

Joint ci ratio: 7.785951e-02	ci left: 2.209556e-03	ci right 2.389444e-03	k: 2528	n:1100000
Cons ci ratio: 1.619241e-03	ci left: 8.412870e-01	ci right 8.426512e-01	k: 926167	n:1100000
KS ci ratio: 1.295372e-01	ci left: 7.779278e-04	ci right 8.865465e-04	k: 914	n:1100000
INA   1100000 perm   679 sec   (1620 perm/sec)   p_kst 8.309091e-04   p_cons 8.419700e-01   p_joint 2.298182e-03

Joint ci ratio: 5.517376e-02	ci left: 4.402098e-03	ci right 4.652750e-03	k: 5024	n:1110000
Cons ci ratio: 1.611935e-03	ci left: 8.412894e-01	ci right 8.426475e-01	k: 934586	n:1110000
KS ci ratio: 1.289747e-01	ci left: 7.778936e-04	ci right 8.859997e-04	k: 922	n:1110000
INA   1110000 perm   689 sec   (1611 perm/sec)   p_kst 8.306306e-04   p_cons 8.419694e-01   p_joint 4.526126e-03

Joint ci ratio: 7.714591e-02	ci left: 2.211251e-03	ci right 2.389553e-03	k: 2575	n:1120000
Cons ci ratio: 1.604597e-03	ci left: 8.413133e-01	ci right 8.426653e-01	k: 943029	n:1120000
KS ci ratio: 1.281441e-01	ci left: 7.813179e-04	ci right 8.891476e-04	k: 934	n:1120000
INA   1120000 perm   700 sec   (1601 perm/sec)   p_kst 8.339286e-04   p_cons 8.419902e-01   p_joint 2.299107e-03

Joint ci ratio: 7.677420e-02	ci left: 2.213381e-03	ci right 2.390956e-03	k: 2600	n:1130000
Cons ci ratio: 1.597332e-03	ci left: 8.413412e-01	ci right 8.426871e-01	k: 951477	n:1130000
KS ci ratio: 1.275318e-01	ci left: 7.821135e-04	ci right 8.894981e-04	k: 943	n:1130000
INA   1130000 perm   710 sec   (1591 perm/sec)   p_kst 8.345133e-04   p_cons 8.420150e-01   p_joint 2.300885e-03

Joint ci ratio: 7.656871e-02	ci left: 2.206010e-03	ci right 2.382499e-03	k: 2614	n:1140000
Cons ci ratio: 1.590201e-03	ci left: 8.413625e-01	ci right 8.427024e-01	k: 959918	n:1140000
KS ci ratio: 1.271956e-01	ci left: 7.794990e-04	ci right 8.862212e-04	k: 948	n:1140000
INA   1140000 perm   721 sec   (1582 perm/sec)   p_kst 8.315789e-04   p_cons 8.420333e-01   p_joint 2.292982e-03

Joint ci ratio: 7.621971e-02	ci left: 2.207298e-03	ci right 2.383050e-03	k: 2638	n:1150000
Cons ci ratio: 1.583419e-03	ci left: 8.413408e-01	ci right 8.426749e-01	k: 968310	n:1150000
KS ci ratio: 1.267955e-01	ci left: 7.777724e-04	ci right 8.838981e-04	k: 954	n:1150000
INA   1150000 perm   731 sec   (1572 perm/sec)   p_kst 8.295652e-04   p_cons 8.420087e-01   p_joint 2.293913e-03

Joint ci ratio: 7.586116e-02	ci left: 2.209412e-03	ci right 2.384467e-03	k: 2663	n:1160000
Cons ci ratio: 1.576283e-03	ci left: 8.413937e-01	ci right 8.427218e-01	k: 976788	n:1160000
KS ci ratio: 1.259409e-01	ci left: 7.819202e-04	ci right 8.878391e-04	k: 967	n:1160000
INA   1160000 perm   742 sec   (1562 perm/sec)   p_kst 8.336207e-04   p_cons 8.420586e-01   p_joint 2.295690e-03

Joint ci ratio: 7.556398e-02	ci left: 2.208137e-03	ci right 2.382376e-03	k: 2684	n:1170000
Cons ci ratio: 1.569450e-03	ci left: 8.414106e-01	ci right 8.427330e-01	k: 985225	n:1170000
KS ci ratio: 1.254881e-01	ci left: 7.810318e-04	ci right 8.864217e-04	k: 974	n:1170000
INA   1170000 perm   753 sec   (1553 perm/sec)   p_kst 8.324786e-04   p_cons 8.420726e-01   p_joint 2.294017e-03

Joint ci ratio: 7.522848e-02	ci left: 2.209379e-03	ci right 2.382909e-03	k: 2708	n:1180000
Cons ci ratio: 1.562744e-03	ci left: 8.414204e-01	ci right 8.427372e-01	k: 993654	n:1180000
KS ci ratio: 1.248494e-01	ci left: 7.826222e-04	ci right 8.876494e-04	k: 984	n:1180000
INA   1180000 perm   764 sec   (1544 perm/sec)   p_kst 8.338983e-04   p_cons 8.420797e-01   p_joint 2.294915e-03

Joint ci ratio: 7.497995e-02	ci left: 2.205655e-03	ci right 2.378294e-03	k: 2726	n:1190000
Cons ci ratio: 1.556104e-03	ci left: 8.414335e-01	ci right 8.427447e-01	k: 1002087	n:1190000
KS ci ratio: 1.244082e-01	ci left: 7.817445e-04	ci right 8.862559e-04	k: 991	n:1190000
INA   1190000 perm   776 sec   (1534 perm/sec)   p_kst 8.327731e-04   p_cons 8.420899e-01   p_joint 2.290756e-03

Joint ci ratio: 7.470659e-02	ci left: 2.203629e-03	ci right 2.375454e-03	k: 2746	n:1200000
Cons ci ratio: 1.549534e-03	ci left: 8.414488e-01	ci right 8.427545e-01	k: 1010523	n:1200000
KS ci ratio: 1.237857e-01	ci left: 7.833046e-04	ci right 8.874623e-04	k: 1001	n:1200000
INA   1200000 perm   787 sec   (1525 perm/sec)   p_kst 8.341667e-04   p_cons 8.421025e-01   p_joint 2.288333e-03

Joint ci ratio: 7.438233e-02	ci left: 2.204882e-03	ci right 2.376026e-03	k: 2770	n:1210000
Cons ci ratio: 1.543045e-03	ci left: 8.414639e-01	ci right 8.427642e-01	k: 1018959	n:1210000
KS ci ratio: 1.234169e-01	ci left: 7.816364e-04	ci right 8.852398e-04	k: 1007	n:1210000
INA   1210000 perm   798 sec   (1516 perm/sec)   p_kst 8.322314e-04   p_cons 8.421149e-01   p_joint 2.289256e-03

Joint ci ratio: 7.404898e-02	ci left: 2.206921e-03	ci right 2.377423e-03	k: 2795	n:1220000
Cons ci ratio: 1.536828e-03	ci left: 8.414460e-01	ci right 8.427409e-01	k: 1027355	n:1220000
KS ci ratio: 1.226284e-01	ci left: 7.855574e-04	ci right 8.889671e-04	k: 1020	n:1220000
INA   1220000 perm   809 sec   (1507 perm/sec)   p_kst 8.360656e-04   p_cons 8.420943e-01   p_joint 2.290984e-03

Joint ci ratio: 7.364162e-02	ci left: 2.213717e-03	ci right 2.383762e-03	k: 2826	n:1230000
Cons ci ratio: 1.530703e-03	ci left: 8.414251e-01	ci right 8.427148e-01	k: 1035747	n:1230000
KS ci ratio: 1.218549e-01	ci left: 7.894168e-04	ci right 8.926318e-04	k: 1033	n:1230000
INA   1230000 perm   820 sec   (1499 perm/sec)   p_kst 8.398374e-04   p_cons 8.420707e-01   p_joint 2.297561e-03

Joint ci ratio: 5.075282e-02	ci left: 4.666364e-03	ci right 4.910152e-03	k: 5936	n:1240000
Cons ci ratio: 1.524549e-03	ci left: 8.414222e-01	ci right 8.427068e-01	k: 1044161	n:1240000
KS ci ratio: 1.210958e-01	ci left: 7.932159e-04	ci right 8.962353e-04	k: 1046	n:1240000
INA   1240000 perm   832 sec   (1491 perm/sec)   p_kst 8.435484e-04   p_cons 8.420653e-01   p_joint 4.787097e-03

Joint ci ratio: 5.054041e-02	ci left: 4.668527e-03	ci right 4.911377e-03	k: 5986	n:1250000
Cons ci ratio: 1.518547e-03	ci left: 8.414059e-01	ci right 8.426853e-01	k: 1052558	n:1250000
KS ci ratio: 1.205215e-01	ci left: 7.946285e-04	ci right 8.973070e-04	k: 1056	n:1250000
INA   1250000 perm   843 sec   (1482 perm/sec)   p_kst 8.448000e-04   p_cons 8.420464e-01   p_joint 4.788800e-03

Joint ci ratio: 5.037677e-02	ci left: 4.662036e-03	ci right 4.903741e-03	k: 6025	n:1260000
Cons ci ratio: 1.512398e-03	ci left: 8.414279e-01	ci right 8.427022e-01	k: 1061003	n:1260000
KS ci ratio: 1.203511e-01	ci left: 7.906310e-04	ci right 8.926383e-04	k: 1059	n:1260000
INA   1260000 perm   855 sec   (1474 perm/sec)   p_kst 8.404762e-04   p_cons 8.420659e-01   p_joint 4.781746e-03

Joint ci ratio: 5.091969e-02	ci left: 4.526586e-03	ci right 4.763871e-03	k: 5898	n:1270000
Cons ci ratio: 1.506453e-03	ci left: 8.414268e-01	ci right 8.426961e-01	k: 1069419	n:1270000
KS ci ratio: 1.198434e-01	ci left: 7.912793e-04	ci right 8.929090e-04	k: 1068	n:1270000
INA   1270000 perm   866 sec   (1466 perm/sec)   p_kst 8.409449e-04   p_cons 8.420622e-01   p_joint 4.644094e-03

Joint ci ratio: 7.227421e-02	ci left: 2.210079e-03	ci right 2.376561e-03	k: 2934	n:1280000
Cons ci ratio: 1.500357e-03	ci left: 8.414648e-01	ci right 8.427290e-01	k: 1077885	n:1280000
KS ci ratio: 1.196200e-01	ci left: 7.881288e-04	ci right 8.891518e-04	k: 1072	n:1280000
INA   1280000 perm   878 sec   (1457 perm/sec)   p_kst 8.375000e-04   p_cons 8.420977e-01   p_joint 2.292187e-03

Joint ci ratio: 7.202930e-02	ci left: 2.208171e-03	ci right 2.373921e-03	k: 2954	n:1290000
Cons ci ratio: 1.494900e-03	ci left: 8.414013e-01	ci right 8.426608e-01	k: 1086221	n:1290000
KS ci ratio: 1.191215e-01	ci left: 7.887877e-04	ci right 8.894441e-04	k: 1081	n:1290000
INA   1290000 perm   890 sec   (1450 perm/sec)   p_kst 8.379845e-04   p_cons 8.420318e-01   p_joint 2.289922e-03

Joint ci ratio: 7.176268e-02	ci left: 2.207804e-03	ci right 2.372888e-03	k: 2976	n:1300000
Cons ci ratio: 1.489141e-03	ci left: 8.414035e-01	ci right 8.426581e-01	k: 1094641	n:1300000
KS ci ratio: 1.186835e-01	ci left: 7.886909e-04	ci right 8.889390e-04	k: 1089	n:1300000
INA   1300000 perm   902 sec   (1442 perm/sec)   p_kst 8.376923e-04   p_cons 8.420315e-01   p_joint 2.289231e-03

Joint ci ratio: 7.153487e-02	ci left: 2.205194e-03	ci right 2.369538e-03	k: 2995	n:1310000
Cons ci ratio: 1.483307e-03	ci left: 8.414308e-01	ci right 8.426806e-01	k: 1103094	n:1310000
KS ci ratio: 1.184124e-01	ci left: 7.863740e-04	ci right 8.860832e-04	k: 1094	n:1310000
INA   1310000 perm   914 sec   (1434 perm/sec)   p_kst 8.351145e-04   p_cons 8.420565e-01   p_joint 2.286260e-03

Joint ci ratio: 5.003315e-02	ci left: 4.512955e-03	ci right 4.745288e-03	k: 6109	n:1320000
Cons ci ratio: 1.477764e-03	ci left: 8.414176e-01	ci right 8.426627e-01	k: 1111494	n:1320000
KS ci ratio: 1.180358e-01	ci left: 7.855628e-04	ci right 8.848303e-04	k: 1101	n:1320000
INA   1320000 perm   926 sec   (1426 perm/sec)   p_kst 8.340909e-04   p_cons 8.420409e-01   p_joint 4.628030e-03

Joint ci ratio: 4.986215e-02	ci left: 4.510207e-03	ci right 4.741582e-03	k: 6151	n:1330000
Cons ci ratio: 1.472117e-03	ci left: 8.414347e-01	ci right 8.426751e-01	k: 1119934	n:1330000
KS ci ratio: 1.173455e-01	ci left: 7.891431e-04	ci right 8.882394e-04	k: 1114	n:1330000
INA   1330000 perm   938 sec   (1418 perm/sec)   p_kst 8.375940e-04   p_cons 8.420556e-01   p_joint 4.624812e-03

Joint ci ratio: 7.075979e-02	ci left: 2.204202e-03	ci right 2.366618e-03	k: 3061	n:1340000
Cons ci ratio: 1.466636e-03	ci left: 8.414329e-01	ci right 8.426686e-01	k: 1128349	n:1340000
KS ci ratio: 1.169789e-01	ci left: 7.883247e-04	ci right 8.869877e-04	k: 1121	n:1340000
INA   1340000 perm   950 sec   (1410 perm/sec)   p_kst 8.365672e-04   p_cons 8.420515e-01   p_joint 2.284328e-03

Joint ci ratio: 7.043833e-02	ci left: 2.208249e-03	ci right 2.370194e-03	k: 3089	n:1350000
Cons ci ratio: 1.461314e-03	ci left: 8.414133e-01	ci right 8.426445e-01	k: 1136740	n:1350000
KS ci ratio: 1.165641e-01	ci left: 7.882381e-04	ci right 8.865163e-04	k: 1129	n:1350000
INA   1350000 perm   962 sec   (1403 perm/sec)   p_kst 8.362963e-04   p_cons 8.420296e-01   p_joint 2.288148e-03

Joint ci ratio: 7.010995e-02	ci left: 2.212961e-03	ci right 2.374465e-03	k: 3118	n:1360000
Cons ci ratio: 1.456066e-03	ci left: 8.413911e-01	ci right 8.426178e-01	k: 1145127	n:1360000
KS ci ratio: 1.161026e-01	ci left: 7.888673e-04	ci right 8.868079e-04	k: 1138	n:1360000
INA   1360000 perm   975 sec   (1395 perm/sec)   p_kst 8.367647e-04   p_cons 8.420051e-01   p_joint 2.292647e-03

Joint ci ratio: 4.902412e-02	ci left: 4.531355e-03	ci right 4.759798e-03	k: 6363	n:1370000
Cons ci ratio: 1.450527e-03	ci left: 8.414327e-01	ci right 8.426549e-01	k: 1153601	n:1370000
KS ci ratio: 1.155459e-01	ci left: 7.909058e-04	ci right 8.885965e-04	k: 1149	n:1370000
INA   1370000 perm   987 sec   (1388 perm/sec)   p_kst 8.386861e-04   p_cons 8.420445e-01   p_joint 4.644526e-03

Joint ci ratio: 4.884407e-02	ci left: 4.532160e-03	ci right 4.759781e-03	k: 6410	n:1380000
Cons ci ratio: 1.445126e-03	ci left: 8.414600e-01	ci right 8.426776e-01	k: 1162056	n:1380000
KS ci ratio: 1.150467e-01	ci left: 7.922120e-04	ci right 8.896126e-04	k: 1159	n:1380000
INA   1380000 perm   999 sec   (1381 perm/sec)   p_kst 8.398551e-04   p_cons 8.420696e-01   p_joint 4.644928e-03

Joint ci ratio: 4.866979e-02	ci left: 4.532245e-03	ci right 4.759035e-03	k: 6456	n:1390000
Cons ci ratio: 1.440050e-03	ci left: 8.414380e-01	ci right 8.426513e-01	k: 1170443	n:1390000
KS ci ratio: 1.146030e-01	ci left: 7.928015e-04	ci right 8.898732e-04	k: 1168	n:1390000
INA   1390000 perm   1012 sec   (1373 perm/sec)   p_kst 8.402878e-04   p_cons 8.420453e-01   p_joint 4.644604e-03

Joint ci ratio: 6.907671e-02	ci left: 2.215708e-03	ci right 2.374934e-03	k: 3212	n:1400000
Cons ci ratio: 1.434799e-03	ci left: 8.414584e-01	ci right 8.426673e-01	k: 1178889	n:1400000
KS ci ratio: 1.142615e-01	ci left: 7.919955e-04	ci right 8.886601e-04	k: 1175	n:1400000
INA   1400000 perm   1025 sec   (1366 perm/sec)   p_kst 8.392857e-04   p_cons 8.420636e-01   p_joint 2.294286e-03

Joint ci ratio: 6.884145e-02	ci left: 2.215327e-03	ci right 2.373962e-03	k: 3234	n:1410000
Cons ci ratio: 1.429724e-03	ci left: 8.414566e-01	ci right 8.426612e-01	k: 1187304	n:1410000
KS ci ratio: 1.139230e-01	ci left: 7.912014e-04	ci right 8.874637e-04	k: 1182	n:1410000
INA   1410000 perm   1037 sec   (1359 perm/sec)   p_kst 8.382979e-04   p_cons 8.420596e-01   p_joint 2.293617e-03

Joint ci ratio: 6.855585e-02	ci left: 2.218414e-03	ci right 2.376584e-03	k: 3261	n:1420000
Cons ci ratio: 1.424653e-03	ci left: 8.414639e-01	ci right 8.426643e-01	k: 1195732	n:1420000
KS ci ratio: 1.133019e-01	ci left: 7.945244e-04	ci right 8.906288e-04	k: 1195	n:1420000
INA   1420000 perm   1050 sec   (1353 perm/sec)   p_kst 8.415493e-04   p_cons 8.420648e-01   p_joint 2.296479e-03

Joint ci ratio: 6.826338e-02	ci left: 2.222146e-03	ci right 2.379880e-03	k: 3289	n:1430000
Cons ci ratio: 1.419620e-03	ci left: 8.414740e-01	ci right 8.426701e-01	k: 1204164	n:1430000
KS ci ratio: 1.128312e-01	ci left: 7.957636e-04	ci right 8.915913e-04	k: 1205	n:1430000
INA   1430000 perm   1063 sec   (1346 perm/sec)   p_kst 8.426573e-04   p_cons 8.420727e-01   p_joint 2.300000e-03

Joint ci ratio: 6.803631e-02	ci left: 2.221732e-03	ci right 2.378891e-03	k: 3311	n:1440000
Cons ci ratio: 1.414855e-03	ci left: 8.414436e-01	ci right 8.426356e-01	k: 1212538	n:1440000
KS ci ratio: 1.123200e-01	ci left: 7.976613e-04	ci right 8.932536e-04	k: 1216	n:1440000
INA   1440000 perm   1075 sec   (1339 perm/sec)   p_kst 8.444444e-04   p_cons 8.420403e-01   p_joint 2.299306e-03

Joint ci ratio: 6.780129e-02	ci left: 2.222003e-03	ci right 2.378617e-03	k: 3334	n:1450000
Cons ci ratio: 1.409914e-03	ci left: 8.414557e-01	ci right 8.426436e-01	k: 1220973	n:1450000
KS ci ratio: 1.118613e-01	ci left: 7.988634e-04	ci right 8.941830e-04	k: 1226	n:1450000
INA   1450000 perm   1089 sec   (1332 perm/sec)   p_kst 8.455172e-04   p_cons 8.420503e-01   p_joint 2.299310e-03

Joint ci ratio: 6.750828e-02	ci left: 2.226311e-03	ci right 2.382523e-03	k: 3363	n:1460000
Cons ci ratio: 1.404992e-03	ci left: 8.414739e-01	ci right 8.426576e-01	k: 1229417	n:1460000
KS ci ratio: 1.113181e-01	ci left: 8.013816e-04	ci right 8.965069e-04	k: 1238	n:1460000
INA   1460000 perm   1102 sec   (1325 perm/sec)   p_kst 8.479452e-04   p_cons 8.420664e-01   p_joint 2.303425e-03

Joint ci ratio: 6.732850e-02	ci left: 2.223204e-03	ci right 2.378767e-03	k: 3381	n:1470000
Cons ci ratio: 1.400254e-03	ci left: 8.414666e-01	ci right 8.426463e-01	k: 1237824	n:1470000
KS ci ratio: 1.108272e-01	ci left: 8.032051e-04	ci right 8.980989e-04	k: 1249	n:1470000
INA   1470000 perm   1115 sec   (1318 perm/sec)   p_kst 8.496599e-04   p_cons 8.420571e-01   p_joint 2.300000e-03

Joint ci ratio: 6.714026e-02	ci left: 2.220804e-03	ci right 2.375748e-03	k: 3400	n:1480000
Cons ci ratio: 1.395486e-03	ci left: 8.414743e-01	ci right 8.426500e-01	k: 1246253	n:1480000
KS ci ratio: 1.103864e-01	ci left: 8.043479e-04	ci right 8.989743e-04	k: 1259	n:1480000
INA   1480000 perm   1128 sec   (1312 perm/sec)   p_kst 8.506757e-04   p_cons 8.420628e-01   p_joint 2.297297e-03

Joint ci ratio: 6.689480e-02	ci left: 2.222397e-03	ci right 2.376863e-03	k: 3425	n:1490000
Cons ci ratio: 1.390699e-03	ci left: 8.414947e-01	ci right 8.426664e-01	k: 1254701	n:1490000
KS ci ratio: 1.099509e-01	ci left: 8.054761e-04	ci right 8.998371e-04	k: 1269	n:1490000
INA   1490000 perm   1141 sec   (1306 perm/sec)   p_kst 8.516779e-04   p_cons 8.420812e-01   p_joint 2.298658e-03

Joint ci ratio: 6.671017e-02	ci left: 2.220036e-03	ci right 2.373896e-03	k: 3444	n:1500000
Cons ci ratio: 1.386211e-03	ci left: 8.414667e-01	ci right 8.426346e-01	k: 1263077	n:1500000
KS ci ratio: 1.096492e-01	ci left: 8.046448e-04	ci right 8.986330e-04	k: 1276	n:1500000
INA   1500000 perm   1155 sec   (1299 perm/sec)   p_kst 8.506667e-04   p_cons 8.420513e-01   p_joint 2.296000e-03

Joint ci ratio: 6.652705e-02	ci left: 2.217707e-03	ci right 2.370967e-03	k: 3463	n:1510000
Cons ci ratio: 1.381485e-03	ci left: 8.414935e-01	ci right 8.426575e-01	k: 1271535	n:1510000
KS ci ratio: 1.093500e-01	ci left: 8.038248e-04	ci right 8.974445e-04	k: 1283	n:1510000
INA   1510000 perm   1168 sec   (1293 perm/sec)   p_kst 8.496689e-04   p_cons 8.420762e-01   p_joint 2.293377e-03

Joint ci ratio: 6.613641e-02	ci left: 2.229643e-03	ci right 2.382789e-03	k: 3504	n:1520000
Cons ci ratio: 1.376803e-03	ci left: 8.415206e-01	ci right 8.426807e-01	k: 1279994	n:1520000
KS ci ratio: 1.088004e-01	ci left: 8.068558e-04	ci right 9.003260e-04	k: 1296	n:1520000
INA   1520000 perm   1181 sec   (1287 perm/sec)   p_kst 8.526316e-04   p_cons 8.421013e-01   p_joint 2.305263e-03

Joint ci ratio: 6.590176e-02	ci left: 2.231141e-03	ci right 2.383825e-03	k: 3529	n:1530000
Cons ci ratio: 1.372097e-03	ci left: 8.415612e-01	ci right 8.427173e-01	k: 1288474	n:1530000
KS ci ratio: 1.085081e-01	ci left: 8.060331e-04	ci right 8.991410e-04	k: 1303	n:1530000
INA   1530000 perm   1195 sec   (1280 perm/sec)   p_kst 8.516340e-04   p_cons 8.421399e-01   p_joint 2.306536e-03

Joint ci ratio: 4.682705e-02	ci left: 4.423778e-03	ci right 4.636534e-03	k: 6975	n:1540000
Cons ci ratio: 1.367753e-03	ci left: 8.415400e-01	ci right 8.426925e-01	k: 1296860	n:1540000
KS ci ratio: 1.080532e-01	ci left: 8.077485e-04	ci right 9.006386e-04	k: 1314	n:1540000
INA   1540000 perm   1209 sec   (1274 perm/sec)   p_kst 8.532468e-04   p_cons 8.421169e-01   p_joint 4.529221e-03

Joint ci ratio: 4.668677e-02	ci left: 4.422017e-03	ci right 4.634034e-03	k: 7017	n:1550000
Cons ci ratio: 1.363185e-03	ci left: 8.415709e-01	ci right 8.427195e-01	k: 1305326	n:1550000
KS ci ratio: 1.076853e-01	ci left: 8.081871e-04	ci right 9.007911e-04	k: 1323	n:1550000
INA   1550000 perm   1222 sec   (1268 perm/sec)   p_kst 8.535484e-04   p_cons 8.421458e-01   p_joint 4.527097e-03

Joint ci ratio: 6.526697e-02	ci left: 2.231740e-03	ci right 2.382938e-03	k: 3598	n:1560000
Cons ci ratio: 1.358886e-03	ci left: 8.415576e-01	ci right 8.427026e-01	k: 1313724	n:1560000
KS ci ratio: 1.073211e-01	ci left: 8.086205e-04	ci right 9.009411e-04	k: 1332	n:1560000
INA   1560000 perm   1236 sec   (1262 perm/sec)   p_kst 8.538462e-04   p_cons 8.421308e-01   p_joint 2.306410e-03

Joint ci ratio: 6.500547e-02	ci left: 2.235695e-03	ci right 2.386532e-03	k: 3627	n:1570000
Cons ci ratio: 1.354514e-03	ci left: 8.415669e-01	ci right 8.427082e-01	k: 1322157	n:1570000
KS ci ratio: 1.067618e-01	ci left: 8.121486e-04	ci right 9.043584e-04	k: 1346	n:1570000
INA   1570000 perm   1251 sec   (1255 perm/sec)   p_kst 8.573248e-04   p_cons 8.421382e-01   p_joint 2.310191e-03

Joint ci ratio: 6.480929e-02	ci left: 2.235244e-03	ci right 2.385577e-03	k: 3649	n:1580000
Cons ci ratio: 1.350524e-03	ci left: 8.415089e-01	ci right 8.426468e-01	k: 1330484	n:1580000
KS ci ratio: 1.064855e-01	ci left: 8.113206e-04	ci right 9.031831e-04	k: 1353	n:1580000
INA   1580000 perm   1264 sec   (1250 perm/sec)   p_kst 8.563291e-04   p_cons 8.420785e-01   p_joint 2.309494e-03

Joint ci ratio: 6.461488e-02	ci left: 2.234798e-03	ci right 2.384634e-03	k: 3671	n:1590000
Cons ci ratio: 1.346161e-03	ci left: 8.415323e-01	ci right 8.426665e-01	k: 1338939	n:1590000
KS ci ratio: 1.061723e-01	ci left: 8.111156e-04	ci right 9.026679e-04	k: 1361	n:1590000
INA   1590000 perm   1279 sec   (1243 perm/sec)   p_kst 8.559748e-04   p_cons 8.421000e-01   p_joint 2.308805e-03

Joint ci ratio: 6.442220e-02	ci left: 2.234359e-03	ci right 2.383702e-03	k: 3693	n:1600000
Cons ci ratio: 1.342181e-03	ci left: 8.414877e-01	ci right 8.426185e-01	k: 1347286	n:1600000
KS ci ratio: 1.059393e-01	ci left: 8.096966e-04	ci right 9.008757e-04	k: 1367	n:1600000
INA   1600000 perm   1293 sec   (1237 perm/sec)   p_kst 8.543750e-04   p_cons 8.420538e-01   p_joint 2.308125e-03

Joint ci ratio: 6.428328e-02	ci left: 2.230258e-03	ci right 2.378994e-03	k: 3709	n:1610000
Cons ci ratio: 1.338027e-03	ci left: 8.414854e-01	ci right 8.426127e-01	k: 1355700	n:1610000
KS ci ratio: 1.057464e-01	ci left: 8.076908e-04	ci right 8.984680e-04	k: 1372	n:1610000
INA   1610000 perm   1308 sec   (1231 perm/sec)   p_kst 8.521739e-04   p_cons 8.420497e-01   p_joint 2.303727e-03

Joint ci ratio: 6.407634e-02	ci left: 2.231069e-03	ci right 2.379362e-03	k: 3733	n:1620000
Cons ci ratio: 1.333966e-03	ci left: 8.414720e-01	ci right 8.425959e-01	k: 1364096	n:1620000
KS ci ratio: 1.054015e-01	ci left: 8.081139e-04	ci right 8.986241e-04	k: 1381	n:1620000
INA   1620000 perm   1322 sec   (1226 perm/sec)   p_kst 8.524691e-04   p_cons 8.420346e-01   p_joint 2.304321e-03

Joint ci ratio: 6.385436e-02	ci left: 2.233077e-03	ci right 2.380970e-03	k: 3759	n:1630000
Cons ci ratio: 1.329823e-03	ci left: 8.414828e-01	ci right 8.426031e-01	k: 1372531	n:1630000
KS ci ratio: 1.050221e-01	ci left: 8.091297e-04	ci right 8.994074e-04	k: 1391	n:1630000
INA   1630000 perm   1336 sec   (1220 perm/sec)   p_kst 8.533742e-04   p_cons 8.420436e-01   p_joint 2.306135e-03

Joint ci ratio: 6.365995e-02	ci left: 2.233261e-03	ci right 2.380700e-03	k: 3782	n:1640000
Cons ci ratio: 1.325594e-03	ci left: 8.415184e-01	ci right 8.426353e-01	k: 1381007	n:1640000
KS ci ratio: 1.046842e-01	ci left: 8.095399e-04	ci right 8.995549e-04	k: 1400	n:1640000
INA   1640000 perm   1350 sec   (1215 perm/sec)   p_kst 8.536585e-04   p_cons 8.420774e-01   p_joint 2.306098e-03

Joint ci ratio: 6.343391e-02	ci left: 2.235830e-03	ci right 2.382895e-03	k: 3809	n:1650000
Cons ci ratio: 1.321528e-03	ci left: 8.415287e-01	ci right 8.426422e-01	k: 1389442	n:1650000
KS ci ratio: 1.043496e-01	ci left: 8.099456e-04	ci right 8.997001e-04	k: 1409	n:1650000
INA   1650000 perm   1364 sec   (1209 perm/sec)   p_kst 8.539394e-04   p_cons 8.420861e-01   p_joint 2.308485e-03

Joint ci ratio: 6.330127e-02	ci left: 2.231847e-03	ci right 2.378332e-03	k: 3825	n:1660000
Cons ci ratio: 1.317595e-03	ci left: 8.415197e-01	ci right 8.426298e-01	k: 1397845	n:1660000
KS ci ratio: 1.041652e-01	ci left: 8.079999e-04	ci right 8.973708e-04	k: 1414	n:1660000
INA   1660000 perm   1379 sec   (1204 perm/sec)   p_kst 8.518072e-04   p_cons 8.420753e-01   p_joint 2.304217e-03

Joint ci ratio: 6.314475e-02	ci left: 2.229680e-03	ci right 2.375647e-03	k: 3844	n:1670000
Cons ci ratio: 1.313806e-03	ci left: 8.414885e-01	ci right 8.425954e-01	k: 1406211	n:1670000
KS ci ratio: 1.040184e-01	ci left: 8.054943e-04	ci right 8.944549e-04	k: 1418	n:1670000
INA   1670000 perm   1394 sec   (1198 perm/sec)   p_kst 8.491018e-04   p_cons 8.420425e-01   p_joint 2.301796e-03

Joint ci ratio: 6.292413e-02	ci left: 2.232226e-03	ci right 2.377831e-03	k: 3871	n:1680000
Cons ci ratio: 1.309909e-03	ci left: 8.414863e-01	ci right 8.425899e-01	k: 1414625	n:1680000
KS ci ratio: 1.035812e-01	ci left: 8.076572e-04	ci right 8.964590e-04	k: 1430	n:1680000
INA   1680000 perm   1409 sec   (1193 perm/sec)   p_kst 8.511905e-04   p_cons 8.420387e-01   p_joint 2.304167e-03

Joint ci ratio: 6.274615e-02	ci left: 2.231831e-03	ci right 2.376984e-03	k: 3893	n:1690000
Cons ci ratio: 1.306191e-03	ci left: 8.414545e-01	ci right 8.425549e-01	k: 1422989	n:1690000
KS ci ratio: 1.032570e-01	ci left: 8.080659e-04	ci right 8.966176e-04	k: 1439	n:1690000
INA   1690000 perm   1424 sec   (1187 perm/sec)   p_kst 8.514793e-04   p_cons 8.420053e-01   p_joint 2.303550e-03

Joint ci ratio: 6.265793e-02	ci left: 2.225072e-03	ci right 2.369574e-03	k: 3904	n:1700000
Cons ci ratio: 1.302491e-03	ci left: 8.414261e-01	ci right 8.425233e-01	k: 1431358	n:1700000
KS ci ratio: 1.031856e-01	ci left: 8.044586e-04	ci right 8.925503e-04	k: 1441	n:1700000
INA   1700000 perm   1439 sec   (1182 perm/sec)   p_kst 8.476471e-04   p_cons 8.419753e-01   p_joint 2.296471e-03

Joint ci ratio: 6.244236e-02	ci left: 2.227602e-03	ci right 2.371753e-03	k: 3931	n:1710000
Cons ci ratio: 1.298576e-03	ci left: 8.414483e-01	ci right 8.425423e-01	k: 1439813	n:1710000
KS ci ratio: 1.027942e-01	ci left: 8.060212e-04	ci right 8.939291e-04	k: 1452	n:1710000
INA   1710000 perm   1453 sec   (1177 perm/sec)   p_kst 8.491228e-04   p_cons 8.419959e-01   p_joint 2.298830e-03

Joint ci ratio: 6.230001e-02	ci left: 2.224953e-03	ci right 2.368592e-03	k: 3949	n:1720000
Cons ci ratio: 1.294719e-03	ci left: 8.414657e-01	ci right 8.425564e-01	k: 1448260	n:1720000
KS ci ratio: 1.026531e-01	ci left: 8.036008e-04	ci right 8.911172e-04	k: 1456	n:1720000
INA   1720000 perm   1468 sec   (1171 perm/sec)   p_kst 8.465116e-04   p_cons 8.420116e-01   p_joint 2.295930e-03

Joint ci ratio: 6.211942e-02	ci left: 2.225180e-03	ci right 2.368402e-03	k: 3972	n:1730000
Cons ci ratio: 1.290908e-03	ci left: 8.414805e-01	ci right 8.425680e-01	k: 1456703	n:1730000
KS ci ratio: 1.024775e-01	ci left: 8.017717e-04	ci right 8.889305e-04	k: 1461	n:1730000
INA   1730000 perm   1484 sec   (1166 perm/sec)   p_kst 8.445087e-04   p_cons 8.420249e-01   p_joint 2.295954e-03

Joint ci ratio: 6.185512e-02	ci left: 2.231629e-03	ci right 2.374633e-03	k: 4006	n:1740000
Cons ci ratio: 1.287360e-03	ci left: 8.414474e-01	ci right 8.425319e-01	k: 1465063	n:1740000
KS ci ratio: 1.019902e-01	ci left: 8.050042e-04	ci right 8.920733e-04	k: 1475	n:1740000
INA   1740000 perm   1499 sec   (1161 perm/sec)   p_kst 8.477011e-04   p_cons 8.419902e-01   p_joint 2.302299e-03

Joint ci ratio: 4.391730e-02	ci left: 4.432455e-03	ci right 4.632047e-03	k: 7930	n:1750000
Cons ci ratio: 1.283710e-03	ci left: 8.414422e-01	ci right 8.425236e-01	k: 1473471	n:1750000
KS ci ratio: 1.017836e-01	ci left: 8.037453e-04	ci right 8.904917e-04	k: 1481	n:1750000
INA   1750000 perm   1515 sec   (1155 perm/sec)   p_kst 8.462857e-04   p_cons 8.419834e-01   p_joint 4.531429e-03

Joint ci ratio: 4.379876e-02	ci left: 4.431434e-03	ci right 4.630429e-03	k: 7973	n:1760000
Cons ci ratio: 1.280046e-03	ci left: 8.414461e-01	ci right 8.425244e-01	k: 1481895	n:1760000
KS ci ratio: 1.014759e-01	ci left: 8.041623e-04	ci right 8.906756e-04	k: 1490	n:1760000
INA   1760000 perm   1531 sec   (1150 perm/sec)   p_kst 8.465909e-04   p_cons 8.419858e-01   p_joint 4.530114e-03

Joint ci ratio: 4.362381e-02	ci left: 4.442162e-03	ci right 4.640821e-03	k: 8037	n:1770000
Cons ci ratio: 1.276506e-03	ci left: 8.414307e-01	ci right 8.425060e-01	k: 1490285	n:1770000
KS ci ratio: 1.011373e-01	ci left: 8.051256e-04	ci right 8.914363e-04	k: 1500	n:1770000
INA   1770000 perm   1546 sec   (1145 perm/sec)   p_kst 8.474576e-04   p_cons 8.419689e-01   p_joint 4.540678e-03

Joint ci ratio: 4.350221e-02	ci left: 4.442211e-03	ci right 4.640305e-03	k: 8082	n:1780000
Cons ci ratio: 1.272831e-03	ci left: 8.414498e-01	ci right 8.425221e-01	k: 1498736	n:1780000
KS ci ratio: 1.010365e-01	ci left: 8.022451e-04	ci right 8.881563e-04	k: 1503	n:1780000
INA   1780000 perm   1561 sec   (1140 perm/sec)   p_kst 8.443820e-04   p_cons 8.419865e-01   p_joint 4.540449e-03

Joint ci ratio: 6.096393e-02	ci left: 2.234203e-03	ci right 2.375237e-03	k: 4124	n:1790000
Cons ci ratio: 1.269356e-03	ci left: 8.414335e-01	ci right 8.425028e-01	k: 1507124	n:1790000
KS ci ratio: 1.007689e-01	ci left: 8.021198e-04	ci right 8.877766e-04	k: 1511	n:1790000
INA   1790000 perm   1577 sec   (1135 perm/sec)   p_kst 8.441341e-04   p_cons 8.419687e-01   p_joint 2.303911e-03

Joint ci ratio: 6.074333e-02	ci left: 2.238204e-03	ci right 2.378961e-03	k: 4154	n:1800000
Cons ci ratio: 1.265919e-03	ci left: 8.414152e-01	ci right 8.424815e-01	k: 1515508	n:1800000
KS ci ratio: 1.005034e-01	ci left: 8.019961e-04	ci right 8.874008e-04	k: 1519	n:1800000
INA   1800000 perm   1593 sec   (1130 perm/sec)   p_kst 8.438889e-04   p_cons 8.419489e-01   p_joint 2.307778e-03

Joint ci ratio: 6.058317e-02	ci left: 2.237808e-03	ci right 2.378157e-03	k: 4176	n:1810000
Cons ci ratio: 1.262353e-03	ci left: 8.414302e-01	ci right 8.424936e-01	k: 1523952	n:1810000
KS ci ratio: 1.002400e-01	ci left: 8.018742e-04	ci right 8.870288e-04	k: 1527	n:1810000
INA   1810000 perm   1608 sec   (1125 perm/sec)   p_kst 8.436464e-04   p_cons 8.419624e-01   p_joint 2.307182e-03

Joint ci ratio: 6.035947e-02	ci left: 2.242288e-03	ci right 2.382380e-03	k: 4207	n:1820000
Cons ci ratio: 1.258812e-03	ci left: 8.414462e-01	ci right 8.425066e-01	k: 1532398	n:1820000
KS ci ratio: 9.978372e-02	ci left: 8.049682e-04	ci right 8.900396e-04	k: 1541	n:1820000
INA   1820000 perm   1624 sec   (1120 perm/sec)   p_kst 8.467033e-04   p_cons 8.419769e-01   p_joint 2.311538e-03

Outputting figure to mutsig2_images.part000000000085/INA.2_1512_1820000_0.0008467_0.84198_0.0023115.png
                gene_name: INA
               theta_stop: 0.100 
                    nperm: 1820000 
                     p_ks: 0.00085 
        ci_ks_bounds_left: 0.00080 
       ci_ks_bounds_right: 0.00089 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.0023 
     ci_joint_bounds_left: 0.0022 
    ci_joint_bounds_right: 0.0024 

Current progress: 50 percent done.
INHBA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.306326e-02	ci left: 8.940557e-01	ci right 9.059101e-01	k: 9001	n:10000
Cons ci ratio: 4.723945e-02	ci left: 3.980467e-01	ci right 4.174071e-01	k: 4077	n:10000
KS ci ratio: 5.788665e-02	ci left: 3.052063e-01	ci right 3.235020e-01	k: 3143	n:10000
INHBA   10000 perm   2 sec   (6447 perm/sec)   p_kst 3.143000e-01   p_cons 4.077000e-01   p_joint 9.001000e-01

Outputting figure to mutsig2_images.part000000000085/INHBA.2_1289_10000_0.3143_0.4077_0.9001.png
                gene_name: INHBA
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 75 percent done.
INTS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.453085e-02	ci left: 3.313090e-01	ci right 3.499839e-01	k: 3406	n:10000
Cons ci ratio: 7.805671e-02	ci left: 1.934789e-01	ci right 2.092954e-01	k: 2013	n:10000
KS ci ratio: 1.029893e-02	ci left: 9.305074e-01	ci right 9.402371e-01	k: 9355	n:10000
INTS4   10000 perm   2 sec   (5361 perm/sec)   p_kst 9.355000e-01   p_cons 2.013000e-01   p_joint 3.406000e-01

Outputting figure to mutsig2_images.part000000000085/INTS4.2_2984_10000_0.9355_0.2013_0.3406.png
                gene_name: INTS4
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000085
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 85 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1707>
Subject: Job 9877374: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1707>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000086> was used as the working directory.
Started at Fri Oct  5 22:44:38 2012
Results reported at Fri Oct  5 22:46:56 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000086.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000086.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 86  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000086.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    149.90 sec.
    Max Memory :      2095 MB
    Max Swap   :      4725 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
86
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 86
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 86: processing genes 7708 - 7798
Calculating significance of each gene.
Using projection method.
7708	INTS8	1
7709	INTS9	1
7710	INTU	2.826659e-02
7711	INVS	1
7712	IP6K1	1
7713	IP6K2	1
7714	IP6K3	1
7715	IPCEF1	1
7716	IPMK	1
7717	IPO11	1
7718	IPO13	1
7719	IPO4	1
7720	IPO5	1
7721	IPO7	1
7722	IPO8	2.835829e-01
7723	IPO9	1
7724	IPP	1
7725	IPPK	1
7726	IQCA1	1
7727	IQCB1	1
7728	IQCC	1
7729	IQCD	1
7730	IQCE	1
7731	IQCF1	1
7732	IQCF2	1
7733	IQCF3	1
7734	IQCG	1
7735	IQCH	1
7736	IQCJ	1
7737	IQCK	1
7738	IQGAP1	1.151707e-01
7739	IQGAP2	1
7740	IQGAP3	1
7741	IQSEC1	1
7742	IQSEC2	1
7743	IQSEC3	1
7744	IQUB	1
7745	IRAK1	1
7746	IRAK1BP1	1
7747	IRAK2	1.314845e-01
7748	IRAK3	1
7749	IRAK4	1
7750	IREB2	2.346771e-01
7751	IRF1	1
7752	IRF2	1.861413e-02
7753	IRF2BP1	1
7754	IRF2BP2	1
7755	IRF3	1
7756	IRF4	1
7757	IRF5	1.676470e-01
7758	IRF6	1.527432e-01
7759	IRF7	1
7760	IRF8	1
7761	IRF9	1
7762	IRGC	1
7763	IRGQ	1
In gene IRS1 the following bins exceed PROBCAP:
    PRAD-CH-5792	categ 6	N = 3733    n = 1	mu =   2.67e-07
7764	IRS1	1.566394e-01
7765	IRS2	9.183166e-03
7766	IRS4	1
7767	IRX1	1.535785e-01
7768	IRX2	1
7769	IRX3	1
7770	IRX4	1
7771	IRX5	1
7772	IRX6	1
7773	ISCA1	1
7774	ISCA1P1	1
7775	ISCA2	1
7776	ISCU	3.265765e-02
7777	ISG15	1
7778	ISG20	1
7779	ISG20L2	1
7780	ISL1	1
7781	ISL2	1
7782	ISLR	1
7783	ISLR2	2.387340e-01
7784	ISM1	1
7785	ISM2	1
7786	ISOC1	1
7787	ISOC2	1
7788	ISPD	1
7789	ISX	8.384646e-02
7790	ISY1	1
7791	ISYNA1	1
7792	ITCH	1
In gene ITFG1 the following bins exceed PROBCAP:
    PRAD-CH-5761	categ 6	N = 1867    n = 1	mu =   2.99e-07
7793	ITFG1	7.681551e-02
7794	ITFG2	1
7795	ITFG3	9.319485e-02
7796	ITGA1	1
7797	ITGA10	1.391898e-01
7798	ITGA11	3.525622e-01
Done

Running MutSig 2:
Scatter job 86: processing genes 7708 - 7798
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
INTU
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.880739e-02	ci left: 8.051156e-01	ci right 8.205017e-01	k: 8129	n:10000
Cons ci ratio: 2.080668e-02	ci left: 7.719526e-01	ci right 7.882839e-01	k: 7802	n:10000
KS ci ratio: 4.634174e-02	ci left: 4.073115e-01	ci right 4.267369e-01	k: 4170	n:10000
INTU   10000 perm   2 sec   (5495 perm/sec)   p_kst 4.170000e-01   p_cons 7.802000e-01   p_joint 8.129000e-01

Outputting figure to mutsig2_images.part000000000086/INTU.2_2893_10000_0.417_0.7802_0.8129.png
                gene_name: INTU
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 25 percent done.
IPO8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.779024e-01	ci left: 4.216838e-02	ci right 5.049848e-02	k: 462	n:10000
Cons ci ratio: 4.470359e-02	ci left: 4.248546e-01	ci right 4.443835e-01	k: 4346	n:10000
KS ci ratio: 2.772291e-01	ci left: 1.688052e-02	ci right 2.240432e-02	k: 195	n:10000
IPO8   10000 perm   2 sec   (5667 perm/sec)   p_kst 1.950000e-02   p_cons 4.346000e-01   p_joint 4.620000e-02

Joint ci ratio: 6.050791e-02	ci left: 1.681758e-01	ci right 1.787193e-01	k: 3468	n:20000
Cons ci ratio: 3.178403e-02	ci left: 4.250703e-01	ci right 4.388495e-01	k: 8639	n:20000
KS ci ratio: 1.932871e-01	ci left: 1.819999e-02	ci right 2.214125e-02	k: 402	n:20000
IPO8   20000 perm   4 sec   (5029 perm/sec)   p_kst 2.010000e-02   p_cons 4.319500e-01   p_joint 1.734000e-01

Joint ci ratio: 9.233957e-02	ci left: 5.404414e-02	ci right 5.930879e-02	k: 1699	n:30000
Cons ci ratio: 2.594616e-02	ci left: 4.264513e-01	ci right 4.376952e-01	k: 12962	n:30000
KS ci ratio: 1.556651e-01	ci left: 1.908669e-02	ci right 2.234040e-02	k: 620	n:30000
IPO8   30000 perm   6 sec   (4764 perm/sec)   p_kst 2.066667e-02   p_cons 4.320667e-01   p_joint 5.663333e-02

Joint ci ratio: 8.141936e-02	ci left: 5.254051e-02	ci right 5.702440e-02	k: 2190	n:40000
Cons ci ratio: 2.234907e-02	ci left: 4.298594e-01	ci right 4.396001e-01	k: 17389	n:40000
KS ci ratio: 1.349770e-01	ci left: 1.925458e-02	ci right 2.206561e-02	k: 825	n:40000
IPO8   40000 perm   9 sec   (4601 perm/sec)   p_kst 2.062500e-02   p_cons 4.347250e-01   p_joint 5.475000e-02

Joint ci ratio: 7.165153e-02	ci left: 5.445271e-02	ci right 5.851897e-02	k: 2823	n:50000
Cons ci ratio: 1.993640e-02	ci left: 4.316872e-01	ci right 4.404002e-01	k: 21802	n:50000
KS ci ratio: 1.225268e-01	ci left: 1.882959e-02	ci right 2.130657e-02	k: 1002	n:50000
IPO8   50000 perm   11 sec   (4422 perm/sec)   p_kst 2.004000e-02   p_cons 4.360400e-01   p_joint 5.646000e-02

Joint ci ratio: 3.726123e-02	ci left: 1.528238e-01	ci right 1.586429e-01	k: 9343	n:60000
Cons ci ratio: 1.816830e-02	ci left: 4.329094e-01	ci right 4.408634e-01	k: 26213	n:60000
KS ci ratio: 1.120701e-01	ci left: 1.886230e-02	ci right 2.111780e-02	k: 1198	n:60000
IPO8   60000 perm   14 sec   (4369 perm/sec)   p_kst 1.996667e-02   p_cons 4.368833e-01   p_joint 1.557167e-01

Joint ci ratio: 3.461451e-02	ci left: 1.521560e-01	ci right 1.575298e-01	k: 10838	n:70000
Cons ci ratio: 1.680446e-02	ci left: 4.336779e-01	ci right 4.410416e-01	k: 30615	n:70000
KS ci ratio: 1.041309e-01	ci left: 1.880862e-02	ci right 2.088860e-02	k: 1388	n:70000
IPO8   70000 perm   16 sec   (4280 perm/sec)   p_kst 1.982857e-02   p_cons 4.373571e-01   p_joint 1.548286e-01

Joint ci ratio: 2.907720e-02	ci left: 1.824264e-01	ci right 1.878215e-01	k: 14809	n:80000
Cons ci ratio: 1.570624e-02	ci left: 4.343207e-01	ci right 4.412088e-01	k: 35021	n:80000
KS ci ratio: 9.720060e-02	ci left: 1.895564e-02	ci right 2.090440e-02	k: 1593	n:80000
IPO8   80000 perm   19 sec   (4224 perm/sec)   p_kst 1.991250e-02   p_cons 4.377625e-01   p_joint 1.851125e-01

Outputting figure to mutsig2_images.part000000000086/IPO8.2_3214_80000_0.019912_0.43776_0.18511.png
                gene_name: IPO8
               theta_stop: 0.097 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 50 percent done.
IQGAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.548769e-01	ci left: 5.552036e-02	ci right 6.493785e-02	k: 601	n:10000
Cons ci ratio: 1.996961e-01	ci left: 3.338573e-02	ci right 4.088702e-02	k: 370	n:10000
KS ci ratio: 3.748370e-02	ci left: 5.124546e-01	ci right 5.321324e-01	k: 5223	n:10000
IQGAP1   10000 perm   2 sec   (5155 perm/sec)   p_kst 5.223000e-01   p_cons 3.700000e-02   p_joint 6.010000e-02

Joint ci ratio: 1.279133e-01	ci left: 4.197441e-02	ci right 4.775885e-02	k: 896	n:20000
Cons ci ratio: 1.422079e-01	ci left: 3.399185e-02	ci right 3.924397e-02	k: 731	n:20000
KS ci ratio: 2.632681e-02	ci left: 5.187513e-01	ci right 5.326412e-01	k: 10514	n:20000
IQGAP1   20000 perm   4 sec   (4633 perm/sec)   p_kst 5.257000e-01   p_cons 3.655000e-02   p_joint 4.480000e-02

Joint ci ratio: 1.095481e-01	ci left: 3.868669e-02	ci right 4.320276e-02	k: 1227	n:30000
Cons ci ratio: 1.167772e-01	ci left: 3.408229e-02	ci right 3.834147e-02	k: 1085	n:30000
KS ci ratio: 2.135586e-02	ci left: 5.232990e-01	ci right 5.346287e-01	k: 15869	n:30000
IQGAP1   30000 perm   7 sec   (4378 perm/sec)   p_kst 5.289667e-01   p_cons 3.616667e-02   p_joint 4.090000e-02

Joint ci ratio: 9.518537e-02	ci left: 3.873566e-02	ci right 4.263138e-02	k: 1626	n:40000
Cons ci ratio: 1.008437e-01	ci left: 3.456149e-02	ci right 3.825621e-02	k: 1455	n:40000
KS ci ratio: 1.840297e-02	ci left: 5.265452e-01	ci right 5.363503e-01	k: 21258	n:40000
IQGAP1   40000 perm   10 sec   (4127 perm/sec)   p_kst 5.314500e-01   p_cons 3.637500e-02   p_joint 4.065000e-02

Joint ci ratio: 8.656060e-02	ci left: 3.769197e-02	ci right 4.112176e-02	k: 1969	n:50000
Cons ci ratio: 8.989046e-02	ci left: 3.499060e-02	ci right 3.830347e-02	k: 1831	n:50000
KS ci ratio: 1.644536e-02	ci left: 5.275146e-01	ci right 5.362817e-01	k: 26595	n:50000
IQGAP1   50000 perm   12 sec   (4038 perm/sec)   p_kst 5.319000e-01   p_cons 3.662000e-02   p_joint 3.938000e-02

Outputting figure to mutsig2_images.part000000000086/IQGAP1.2_5126_50000_0.5319_0.03662_0.03938.png
                gene_name: IQGAP1
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.039 
     ci_joint_bounds_left: 0.038 
    ci_joint_bounds_right: 0.041 

Current progress: 75 percent done.
IRS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.394201e-02	ci left: 7.194657e-01	ci right 7.370011e-01	k: 7283	n:10000
Cons ci ratio: 5.893690e-02	ci left: 2.975703e-01	ci right 3.157424e-01	k: 3066	n:10000
KS ci ratio: 2.669787e-02	ci left: 6.738786e-01	ci right 6.922147e-01	k: 6831	n:10000
IRS2   10000 perm   2 sec   (4808 perm/sec)   p_kst 6.831000e-01   p_cons 3.066000e-01   p_joint 7.283000e-01

Outputting figure to mutsig2_images.part000000000086/IRS2.2_4025_10000_0.6831_0.3066_0.7283.png
                gene_name: IRS2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000086
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 86 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1640>
Subject: Job 9877394: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1640>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000087> was used as the working directory.
Started at Fri Oct  5 22:44:38 2012
Results reported at Fri Oct  5 22:46:22 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000087.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000087.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 87  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000087.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    109.92 sec.
    Max Memory :      1873 MB
    Max Swap   :      4696 MB

    Max Processes  :         7
    Max Threads    :        55

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
87
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 87
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 87: processing genes 7799 - 7888
Calculating significance of each gene.
Using projection method.
7799	ITGA2	1
7800	ITGA2B	1
7801	ITGA3	1
7802	ITGA4	1
7803	ITGA5	1
7804	ITGA6	1
7805	ITGA7	1
7806	ITGA8	1
7807	ITGA9	1
7808	ITGAD	2.309906e-01
7809	ITGAE	1
7810	ITGAL	1.646815e-01
7811	ITGAM	1.740225e-01
7812	ITGAV	1
7813	ITGAX	1
7814	ITGB1	1
7815	ITGB1BP1	2.998122e-02
7816	ITGB1BP2	1
7817	ITGB1BP3	1
7818	ITGB2	1
7819	ITGB3	1
7820	ITGB3BP	1
7821	ITGB4	1
7822	ITGB5	1
7823	ITGB6	1.948464e-01
7824	ITGB7	1
7825	ITGB8	2.147373e-01
7826	ITGBL1	7.768635e-04
7827	ITIH1	1
7828	ITIH2	1.813539e-01
7829	ITIH3	2.694583e-01
7830	ITIH4	1
7831	ITIH5	1
7832	ITIH5L	1
7833	ITK	7.475853e-02
7834	ITLN1	1
7835	ITLN2	1
7836	ITM2A	1
7837	ITM2B	1
7838	ITM2C	1
7839	ITPA	1
7840	ITPK1	4.157965e-02
7841	ITPKA	1
7842	ITPKB	1
7843	ITPKC	1
7844	ITPR1	1
7845	ITPR2	3.137476e-01
7846	ITPR3	1
7847	ITPRIP	1
7848	ITPRIPL1	1.365853e-01
7849	ITPRIPL2	1
7850	ITSN1	4.035166e-01
7851	ITSN2	1
7852	IVD	1.093846e-01
7853	IVL	1
7854	IVNS1ABP	1
7855	IWS1	1.656706e-01
7856	IYD	1
7857	IZUMO1	1
7858	JAG1	1
7859	JAG2	3.391760e-01
7860	JAGN1	1
7861	JAK1	3.578077e-02
7862	JAK2	1
7863	JAK3	1
7864	JAKMIP1	1
7865	JAKMIP2	1
7866	JAKMIP3	1.136270e-01
7867	JAM2	2.269948e-02
7868	JAM3	1
7869	JARID2	1
7870	JAZF1	1
7871	JDP2	1
7872	JHDM1D	1
7873	JKAMP	1
7874	JMJD1C	3.081356e-01
7875	JMJD4	1.290768e-01
7876	JMJD5	1
7877	JMJD6	1
7878	JMJD7	1
7879	JMJD7-PLA2G4B	2.110540e-01
7880	JMJD8	1
7881	JMY	1
7882	JOSD1	1
7883	JOSD2	1
7884	JPH1	1
7885	JPH2	1
7886	JPH3	1
7887	JPH4	1
7888	JRK	1
Done

Running MutSig 2:
Scatter job 87: processing genes 7799 - 7888
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
JAK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.654243e-02	ci left: 4.052191e-01	ci right 4.246305e-01	k: 4149	n:10000
Cons ci ratio: 1.839213e-02	ci left: 8.119208e-01	ci right 8.270926e-01	k: 8196	n:10000
KS ci ratio: 6.739209e-02	ci left: 2.442058e-01	ci right 2.613385e-01	k: 2527	n:10000
JAK1   10000 perm   2 sec   (4609 perm/sec)   p_kst 2.527000e-01   p_cons 8.196000e-01   p_joint 4.149000e-01

Outputting figure to mutsig2_images.part000000000087/JAK1.3_3561_10000_0.2527_0.8196_0.4149.png
                gene_name: JAK1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.42 

Current progress: 50 percent done.
ITGBL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.613224e-02	ci left: 6.831489e-01	ci right 7.013390e-01	k: 6923	n:10000
Cons ci ratio: 2.651925e-02	ci left: 6.768003e-01	ci right 6.950913e-01	k: 6860	n:10000
KS ci ratio: 4.649454e-02	ci left: 4.057173e-01	ci right 4.251320e-01	k: 4154	n:10000
ITGBL1   10000 perm   2 sec   (6350 perm/sec)   p_kst 4.154000e-01   p_cons 6.860000e-01   p_joint 6.923000e-01

Outputting figure to mutsig2_images.part000000000087/ITGBL1.2_1529_10000_0.4154_0.686_0.6923.png
                gene_name: ITGBL1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000087
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 87 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1546>
Subject: Job 9877398: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1546>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000088> was used as the working directory.
Started at Fri Oct  5 22:44:54 2012
Results reported at Sat Oct  6 03:40:22 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000088.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000088.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 88  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000088.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  18758.26 sec.
    Max Memory :      2385 MB
    Max Swap   :      4764 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
88
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 88
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 88: processing genes 7889 - 7979
Calculating significance of each gene.
Using projection method.
7889	JRKL	1
7890	JSRP1	1
7891	JTB	1
7892	JUB	3.495715e-02
7893	JUN	1
In gene JUNB the following bins exceed PROBCAP:
    PRAD-EJ-5499	categ 6	N = 444     n = 1	mu =   9.97e-08
7894	JUNB	5.280433e-03
7895	JUND	1.715409e-02
7896	JUP	1
7897	KAAG1	4.750422e-02
7898	KAL1	1
7899	KALRN	2.968393e-01
7900	KANK1	1.975851e-02
7901	KANK2	1
7902	KANK3	1
In gene KANK4 the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 3024    n = 1	mu =   9.08e-07
7903	KANK4	4.194348e-02
7904	KARS	1.573329e-01
7905	KAT2A	9.661731e-02
7906	KAT2B	1
7907	KAT5	1
7908	KATNA1	1
7909	KATNAL1	1
7910	KATNAL2	1
7911	KATNB1	1
7912	KAZ	1
7913	KAZALD1	1
7914	KBTBD10	1
7915	KBTBD12	1
7916	KBTBD2	1
7917	KBTBD3	1
7918	KBTBD4	1
7919	KBTBD5	1
7920	KBTBD6	1.795222e-01
7921	KBTBD7	3.278813e-02
7922	KBTBD8	1
7923	KCMF1	1
7924	KCNA1	1
7925	KCNA10	1
7926	KCNA2	1.259789e-01
7927	KCNA3	1
7928	KCNA4	8.547587e-02
7929	KCNA5	1
7930	KCNA6	1
7931	KCNA7	1
7932	KCNAB1	1
7933	KCNAB2	1
7934	KCNAB3	1
7935	KCNB1	2.734654e-02
7936	KCNB2	4.437840e-02
7937	KCNC1	1
7938	KCNC2	1
7939	KCNC3	1
7940	KCNC4	1
7941	KCND1	1
7942	KCND2	1
7943	KCND3	2.167415e-02
7944	KCNE1	1
7945	KCNE1L	1
7946	KCNE2	1
7947	KCNE3	1
7948	KCNE4	1
7949	KCNF1	1
7950	KCNG1	1.537262e-02
7951	KCNG2	1
7952	KCNG3	1
7953	KCNG4	1
7954	KCNH1	2.500280e-01
7955	KCNH2	1
7956	KCNH3	1
7957	KCNH4	1
In gene KCNH5 the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 3045    n = 1	mu =   9.08e-07
7958	KCNH5	2.919112e-01
7959	KCNH6	1
7960	KCNH7	1
7961	KCNH8	1
7962	KCNIP1	1
7963	KCNIP2	1
7964	KCNIP3	1
7965	KCNIP4	1
7966	KCNJ1	1
7967	KCNJ10	1
7968	KCNJ11	1.348475e-01
7969	KCNJ12	1
7970	KCNJ13	1
7971	KCNJ14	1
7972	KCNJ15	1
7973	KCNJ16	1
7974	KCNJ2	1
7975	KCNJ3	1
7976	KCNJ4	1
7977	KCNJ5	1
7978	KCNJ6	1
7979	KCNJ8	1
Done

Running MutSig 2:
Scatter job 88: processing genes 7889 - 7979
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
KALRN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.959510e+00	ci left: 6.187149e-05	ci right 8.764745e-04	k: 3	n:10000
Cons ci ratio: 5.283892e-02	ci left: 3.455153e-01	ci right 3.643693e-01	k: 3549	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
KALRN   10000 perm   3 sec   (2940 perm/sec)   p_kst 1.000000e-04   p_cons 3.549000e-01   p_joint 3.000000e-04

Joint ci ratio: 2.262987e+00	ci left: 1.211069e-05	ci right 3.611872e-04	k: 2	n:20000
Cons ci ratio: 3.791569e-02	ci left: 3.416448e-01	ci right 3.548994e-01	k: 6965	n:20000
KS ci ratio: 2.262987e+00	ci left: 1.211069e-05	ci right 3.611872e-04	k: 2	n:20000
KALRN   20000 perm   11 sec   (1764 perm/sec)   p_kst 1.000000e-04   p_cons 3.482500e-01   p_joint 1.000000e-04

Joint ci ratio: 1.481423e+00	ci left: 7.339990e-05	ci right 4.352646e-04	k: 6	n:30000
Cons ci ratio: 3.087409e-02	ci left: 3.441026e-01	ci right 3.549266e-01	k: 10485	n:30000
KS ci ratio: 1.481423e+00	ci left: 7.339990e-05	ci right 4.352646e-04	k: 6	n:30000
KALRN   30000 perm   16 sec   (1904 perm/sec)   p_kst 2.000000e-04   p_cons 3.495000e-01   p_joint 2.000000e-04

Joint ci ratio: 1.306503e+00	ci left: 8.634963e-05	ci right 3.940415e-04	k: 8	n:40000
Cons ci ratio: 2.670299e-02	ci left: 3.454240e-01	ci right 3.547978e-01	k: 14004	n:40000
KS ci ratio: 1.306503e+00	ci left: 8.634963e-05	ci right 3.940415e-04	k: 8	n:40000
KALRN   40000 perm   20 sec   (1998 perm/sec)   p_kst 2.000000e-04   p_cons 3.501000e-01   p_joint 2.000000e-04

Joint ci ratio: 1.239476e+00	ci left: 8.231066e-05	ci right 3.416684e-04	k: 9	n:50000
Cons ci ratio: 2.385896e-02	ci left: 3.463964e-01	ci right 3.547809e-01	k: 17529	n:50000
KS ci ratio: 1.239476e+00	ci left: 8.231066e-05	ci right 3.416684e-04	k: 9	n:50000
KALRN   50000 perm   24 sec   (2090 perm/sec)   p_kst 1.800000e-04   p_cons 3.505800e-01   p_joint 1.800000e-04

Joint ci ratio: 1.181806e+00	ci left: 7.992595e-05	ci right 3.064845e-04	k: 10	n:60000
Cons ci ratio: 2.179770e-02	ci left: 3.463986e-01	ci right 3.540492e-01	k: 21013	n:60000
KS ci ratio: 1.181806e+00	ci left: 7.992595e-05	ci right 3.064845e-04	k: 10	n:60000
KALRN   60000 perm   28 sec   (2131 perm/sec)   p_kst 1.666667e-04   p_cons 3.502167e-01   p_joint 1.666667e-04

Joint ci ratio: 1.087104e+00	ci left: 8.858268e-05	ci right 2.994320e-04	k: 12	n:70000
Cons ci ratio: 2.017463e-02	ci left: 3.468221e-01	ci right 3.539046e-01	k: 24525	n:70000
KS ci ratio: 1.087104e+00	ci left: 8.858268e-05	ci right 2.994320e-04	k: 12	n:70000
KALRN   70000 perm   32 sec   (2171 perm/sec)   p_kst 1.714286e-04   p_cons 3.503571e-01   p_joint 1.714286e-04

Joint ci ratio: 1.087117e+00	ci left: 7.750951e-05	ci right 2.620051e-04	k: 12	n:80000
Cons ci ratio: 1.886320e-02	ci left: 3.472553e-01	ci right 3.538805e-01	k: 28045	n:80000
KS ci ratio: 1.087117e+00	ci left: 7.750951e-05	ci right 2.620051e-04	k: 12	n:80000
KALRN   80000 perm   36 sec   (2200 perm/sec)   p_kst 1.500000e-04   p_cons 3.505625e-01   p_joint 1.500000e-04

Joint ci ratio: 1.047577e+00	ci left: 7.691275e-05	ci right 2.469917e-04	k: 13	n:90000
Cons ci ratio: 1.775958e-02	ci left: 3.480807e-01	ci right 3.543289e-01	k: 31608	n:90000
KS ci ratio: 1.047577e+00	ci left: 7.691275e-05	ci right 2.469917e-04	k: 13	n:90000
KALRN   90000 perm   41 sec   (2209 perm/sec)   p_kst 1.444444e-04   p_cons 3.512000e-01   p_joint 1.444444e-04

Joint ci ratio: 9.506541e-01	ci left: 9.145650e-05	ci right 2.598170e-04	k: 16	n:100000
Cons ci ratio: 1.687453e-02	ci left: 3.475322e-01	ci right 3.534565e-01	k: 35049	n:100000
KS ci ratio: 9.506541e-01	ci left: 9.145650e-05	ci right 2.598170e-04	k: 16	n:100000
KALRN   100000 perm   45 sec   (2219 perm/sec)   p_kst 1.600000e-04   p_cons 3.504900e-01   p_joint 1.600000e-04

Joint ci ratio: 8.992279e-01	ci left: 9.698407e-05	ci right 2.586037e-04	k: 18	n:110000
Cons ci ratio: 1.608859e-02	ci left: 3.476889e-01	ci right 3.533372e-01	k: 38556	n:110000
KS ci ratio: 8.992279e-01	ci left: 9.698407e-05	ci right 2.586037e-04	k: 18	n:110000
KALRN   110000 perm   49 sec   (2224 perm/sec)   p_kst 1.636364e-04   p_cons 3.505091e-01   p_joint 1.636364e-04

Joint ci ratio: 8.992347e-01	ci left: 8.890185e-05	ci right 2.370543e-04	k: 18	n:120000
Cons ci ratio: 1.541640e-02	ci left: 3.474339e-01	ci right 3.528400e-01	k: 42016	n:120000
KS ci ratio: 8.992347e-01	ci left: 8.890185e-05	ci right 2.370543e-04	k: 18	n:120000
KALRN   120000 perm   54 sec   (2221 perm/sec)   p_kst 1.500000e-04   p_cons 3.501333e-01   p_joint 1.500000e-04

Joint ci ratio: 8.992405e-01	ci left: 8.206308e-05	ci right 2.188201e-04	k: 18	n:130000
Cons ci ratio: 1.482724e-02	ci left: 3.470612e-01	ci right 3.522532e-01	k: 45455	n:130000
KS ci ratio: 8.992405e-01	ci left: 8.206308e-05	ci right 2.188201e-04	k: 18	n:130000
KALRN   130000 perm   59 sec   (2219 perm/sec)   p_kst 1.384615e-04   p_cons 3.496538e-01   p_joint 1.384615e-04

Joint ci ratio: 8.992454e-01	ci left: 7.620130e-05	ci right 2.031907e-04	k: 18	n:140000
Cons ci ratio: 1.427054e-02	ci left: 3.477079e-01	ci right 3.527126e-01	k: 49029	n:140000
KS ci ratio: 8.992454e-01	ci left: 7.620130e-05	ci right 2.031907e-04	k: 18	n:140000
KALRN   140000 perm   64 sec   (2186 perm/sec)   p_kst 1.285714e-04   p_cons 3.502071e-01   p_joint 1.285714e-04

Joint ci ratio: 8.356827e-01	ci left: 8.666423e-05	ci right 2.139970e-04	k: 21	n:150000
Cons ci ratio: 1.377054e-02	ci left: 3.483246e-01	ci right 3.531611e-01	k: 52611	n:150000
KS ci ratio: 8.356827e-01	ci left: 8.666423e-05	ci right 2.139970e-04	k: 21	n:150000
KALRN   150000 perm   69 sec   (2168 perm/sec)   p_kst 1.400000e-04   p_cons 3.507400e-01   p_joint 1.400000e-04

Joint ci ratio: 8.356867e-01	ci left: 8.124760e-05	ci right 2.006226e-04	k: 21	n:160000
Cons ci ratio: 1.334324e-02	ci left: 3.480619e-01	ci right 3.527435e-01	k: 56064	n:160000
KS ci ratio: 8.356867e-01	ci left: 8.124760e-05	ci right 2.006226e-04	k: 21	n:160000
KALRN   160000 perm   74 sec   (2156 perm/sec)   p_kst 1.312500e-04   p_cons 3.504000e-01   p_joint 1.312500e-04

Joint ci ratio: 7.687142e-01	ci left: 9.517091e-05	ci right 2.170802e-04	k: 25	n:170000
Cons ci ratio: 1.292797e-02	ci left: 3.487249e-01	ci right 3.532684e-01	k: 59669	n:170000
KS ci ratio: 7.687142e-01	ci left: 9.517091e-05	ci right 2.170802e-04	k: 25	n:170000
KALRN   170000 perm   79 sec   (2143 perm/sec)   p_kst 1.470588e-04   p_cons 3.509941e-01   p_joint 1.470588e-04

Joint ci ratio: 7.687176e-01	ci left: 8.988352e-05	ci right 2.050206e-04	k: 25	n:180000
Cons ci ratio: 1.257861e-02	ci left: 3.482511e-01	ci right 3.526648e-01	k: 63082	n:180000
KS ci ratio: 7.687176e-01	ci left: 8.988352e-05	ci right 2.050206e-04	k: 25	n:180000
KALRN   180000 perm   85 sec   (2128 perm/sec)   p_kst 1.388889e-04   p_cons 3.504556e-01   p_joint 1.388889e-04

Joint ci ratio: 7.407538e-01	ci left: 9.365029e-05	ci right 2.067490e-04	k: 27	n:190000
Cons ci ratio: 1.225043e-02	ci left: 3.480389e-01	ci right 3.523341e-01	k: 66535	n:190000
KS ci ratio: 7.407538e-01	ci left: 9.365029e-05	ci right 2.067490e-04	k: 27	n:190000
KALRN   190000 perm   90 sec   (2107 perm/sec)   p_kst 1.421053e-04   p_cons 3.501842e-01   p_joint 1.421053e-04

Joint ci ratio: 7.039965e-01	ci left: 1.012066e-04	ci right 2.141275e-04	k: 30	n:200000
Cons ci ratio: 1.193577e-02	ci left: 3.482638e-01	ci right 3.524505e-01	k: 70071	n:200000
KS ci ratio: 7.039965e-01	ci left: 1.012066e-04	ci right 2.141275e-04	k: 30	n:200000
KALRN   200000 perm   95 sec   (2095 perm/sec)   p_kst 1.500000e-04   p_cons 3.503550e-01   p_joint 1.500000e-04

Joint ci ratio: 6.722184e-01	ci left: 1.081723e-04	ci right 2.206800e-04	k: 33	n:210000
Cons ci ratio: 1.164064e-02	ci left: 3.486064e-01	ci right 3.526929e-01	k: 73636	n:210000
KS ci ratio: 6.722184e-01	ci left: 1.081723e-04	ci right 2.206800e-04	k: 33	n:210000
KALRN   210000 perm   101 sec   (2085 perm/sec)   p_kst 1.571429e-04   p_cons 3.506476e-01   p_joint 1.571429e-04

Joint ci ratio: 6.197487e-01	ci left: 1.260612e-04	ci right 2.423298e-04	k: 39	n:220000
Cons ci ratio: 1.137181e-02	ci left: 3.487012e-01	ci right 3.526937e-01	k: 77153	n:220000
KS ci ratio: 6.197487e-01	ci left: 1.260612e-04	ci right 2.423298e-04	k: 39	n:220000
KALRN   220000 perm   106 sec   (2074 perm/sec)   p_kst 1.772727e-04   p_cons 3.506955e-01   p_joint 1.772727e-04

Joint ci ratio: 6.121452e-01	ci left: 1.242488e-04	ci right 2.368128e-04	k: 40	n:230000
Cons ci ratio: 1.111803e-02	ci left: 3.489015e-01	ci right 3.528066e-01	k: 80696	n:230000
KS ci ratio: 6.121452e-01	ci left: 1.242488e-04	ci right 2.368128e-04	k: 40	n:230000
KALRN   230000 perm   112 sec   (2062 perm/sec)   p_kst 1.739130e-04   p_cons 3.508522e-01   p_joint 1.739130e-04

Joint ci ratio: 5.977396e-01	ci left: 1.261274e-04	ci right 2.365419e-04	k: 42	n:240000
Cons ci ratio: 1.088121e-02	ci left: 3.490569e-01	ci right 3.528800e-01	k: 84232	n:240000
KS ci ratio: 5.977396e-01	ci left: 1.261274e-04	ci right 2.365419e-04	k: 42	n:240000
KALRN   240000 perm   117 sec   (2049 perm/sec)   p_kst 1.750000e-04   p_cons 3.509667e-01   p_joint 1.750000e-04

Joint ci ratio: 5.909090e-01	ci left: 1.244800e-04	ci right 2.316760e-04	k: 43	n:250000
Cons ci ratio: 1.066115e-02	ci left: 3.491049e-01	ci right 3.528506e-01	k: 87744	n:250000
KS ci ratio: 5.909090e-01	ci left: 1.244800e-04	ci right 2.316760e-04	k: 43	n:250000
KALRN   250000 perm   123 sec   (2038 perm/sec)   p_kst 1.720000e-04   p_cons 3.509760e-01   p_joint 1.720000e-04

Joint ci ratio: 5.779202e-01	ci left: 1.262462e-04	ci right 2.315838e-04	k: 45	n:260000
Cons ci ratio: 1.044590e-02	ci left: 3.494994e-01	ci right 3.531732e-01	k: 91347	n:260000
KS ci ratio: 5.779202e-01	ci left: 1.262462e-04	ci right 2.315838e-04	k: 45	n:260000
KALRN   260000 perm   128 sec   (2027 perm/sec)   p_kst 1.730769e-04   p_cons 3.513346e-01   p_joint 1.730769e-04

Joint ci ratio: 5.779222e-01	ci left: 1.215703e-04	ci right 2.230068e-04	k: 45	n:270000
Cons ci ratio: 1.025183e-02	ci left: 3.494806e-01	ci right 3.530855e-01	k: 94846	n:270000
KS ci ratio: 5.779222e-01	ci left: 1.215703e-04	ci right 2.230068e-04	k: 45	n:270000
KALRN   270000 perm   134 sec   (2015 perm/sec)   p_kst 1.666667e-04   p_cons 3.512815e-01   p_joint 1.666667e-04

Joint ci ratio: 5.717418e-01	ci left: 1.202802e-04	ci right 2.191281e-04	k: 46	n:280000
Cons ci ratio: 1.005991e-02	ci left: 3.498384e-01	ci right 3.533790e-01	k: 98450	n:280000
KS ci ratio: 5.717418e-01	ci left: 1.202802e-04	ci right 2.191281e-04	k: 46	n:280000
KALRN   280000 perm   140 sec   (2004 perm/sec)   p_kst 1.642857e-04   p_cons 3.516071e-01   p_joint 1.642857e-04

Joint ci ratio: 5.543230e-01	ci left: 1.250042e-04	ci right 2.233753e-04	k: 49	n:290000
Cons ci ratio: 9.876057e-03	ci left: 3.502788e-01	ci right 3.537587e-01	k: 102085	n:290000
KS ci ratio: 5.543230e-01	ci left: 1.250042e-04	ci right 2.233753e-04	k: 49	n:290000
KALRN   290000 perm   146 sec   (1990 perm/sec)   p_kst 1.689655e-04   p_cons 3.520172e-01   p_joint 1.689655e-04

Joint ci ratio: 5.488622e-01	ci left: 1.237057e-04	ci right 2.197234e-04	k: 50	n:300000
Cons ci ratio: 9.708657e-03	ci left: 3.503740e-01	ci right 3.537955e-01	k: 105625	n:300000
KS ci ratio: 5.488622e-01	ci left: 1.237057e-04	ci right 2.197234e-04	k: 50	n:300000
KALRN   300000 perm   152 sec   (1978 perm/sec)   p_kst 1.666667e-04   p_cons 3.520833e-01   p_joint 1.666667e-04

Joint ci ratio: 5.435597e-01	ci left: 1.224954e-04	ci right 2.163027e-04	k: 51	n:310000
Cons ci ratio: 9.550031e-03	ci left: 3.504378e-01	ci right 3.538037e-01	k: 109157	n:310000
KS ci ratio: 5.435597e-01	ci left: 1.224954e-04	ci right 2.163027e-04	k: 51	n:310000
KALRN   310000 perm   158 sec   (1965 perm/sec)   p_kst 1.645161e-04   p_cons 3.521194e-01   p_joint 1.645161e-04

Joint ci ratio: 5.435612e-01	ci left: 1.186674e-04	ci right 2.095434e-04	k: 51	n:320000
Cons ci ratio: 9.400736e-03	ci left: 3.504106e-01	ci right 3.537233e-01	k: 112661	n:320000
KS ci ratio: 5.435612e-01	ci left: 1.186674e-04	ci right 2.095434e-04	k: 51	n:320000
KALRN   320000 perm   164 sec   (1951 perm/sec)   p_kst 1.593750e-04   p_cons 3.520656e-01   p_joint 1.593750e-04

Joint ci ratio: 5.334000e-01	ci left: 1.203072e-04	ci right 2.100715e-04	k: 53	n:330000
Cons ci ratio: 9.257432e-03	ci left: 3.504248e-01	ci right 3.536869e-01	k: 116178	n:330000
KS ci ratio: 5.334000e-01	ci left: 1.203072e-04	ci right 2.100715e-04	k: 53	n:330000
KALRN   330000 perm   170 sec   (1937 perm/sec)   p_kst 1.606061e-04   p_cons 3.520545e-01   p_joint 1.606061e-04

Joint ci ratio: 5.285292e-01	ci left: 1.193153e-04	ci right 2.072252e-04	k: 54	n:340000
Cons ci ratio: 9.119429e-03	ci left: 3.504914e-01	ci right 3.537052e-01	k: 119713	n:340000
KS ci ratio: 5.285292e-01	ci left: 1.193153e-04	ci right 2.072252e-04	k: 54	n:340000
KALRN   340000 perm   177 sec   (1920 perm/sec)   p_kst 1.588235e-04   p_cons 3.520971e-01   p_joint 1.588235e-04

Joint ci ratio: 5.285304e-01	ci left: 1.159062e-04	ci right 2.013047e-04	k: 54	n:350000
Cons ci ratio: 8.990065e-03	ci left: 3.504204e-01	ci right 3.535878e-01	k: 123201	n:350000
KS ci ratio: 5.285304e-01	ci left: 1.159062e-04	ci right 2.013047e-04	k: 54	n:350000
KALRN   350000 perm   185 sec   (1889 perm/sec)   p_kst 1.542857e-04   p_cons 3.520029e-01   p_joint 1.542857e-04

Joint ci ratio: 5.237906e-01	ci left: 1.150951e-04	ci right 1.988567e-04	k: 55	n:360000
Cons ci ratio: 8.855590e-03	ci left: 3.508920e-01	ci right 3.540159e-01	k: 126883	n:360000
KS ci ratio: 5.237906e-01	ci left: 1.150951e-04	ci right 1.988567e-04	k: 55	n:360000
KALRN   360000 perm   192 sec   (1870 perm/sec)   p_kst 1.527778e-04   p_cons 3.524528e-01   p_joint 1.527778e-04

Joint ci ratio: 5.191760e-01	ci left: 1.143311e-04	ci right 1.965379e-04	k: 56	n:370000
Cons ci ratio: 8.734456e-03	ci left: 3.509469e-01	ci right 3.540284e-01	k: 130420	n:370000
KS ci ratio: 5.191760e-01	ci left: 1.143311e-04	ci right 1.965379e-04	k: 56	n:370000
KALRN   370000 perm   200 sec   (1854 perm/sec)   p_kst 1.513514e-04   p_cons 3.524865e-01   p_joint 1.513514e-04

Joint ci ratio: 5.103002e-01	ci left: 1.159015e-04	ci right 1.973073e-04	k: 58	n:380000
Cons ci ratio: 8.615628e-03	ci left: 3.511333e-01	ci right 3.541742e-01	k: 134008	n:380000
KS ci ratio: 5.103002e-01	ci left: 1.159015e-04	ci right 1.973073e-04	k: 58	n:380000
KALRN   380000 perm   207 sec   (1835 perm/sec)   p_kst 1.526316e-04   p_cons 3.526526e-01   p_joint 1.526316e-04

Joint ci ratio: 5.103013e-01	ci left: 1.129296e-04	ci right 1.922483e-04	k: 58	n:390000
Cons ci ratio: 8.502618e-03	ci left: 3.512515e-01	ci right 3.542533e-01	k: 137573	n:390000
KS ci ratio: 5.103013e-01	ci left: 1.129296e-04	ci right 1.922483e-04	k: 58	n:390000
KALRN   390000 perm   214 sec   (1823 perm/sec)   p_kst 1.487179e-04   p_cons 3.527513e-01   p_joint 1.487179e-04

Joint ci ratio: 5.103023e-01	ci left: 1.101064e-04	ci right 1.874421e-04	k: 58	n:400000
Cons ci ratio: 8.396423e-03	ci left: 3.512291e-01	ci right 3.541930e-01	k: 141084	n:400000
KS ci ratio: 5.103023e-01	ci left: 1.101064e-04	ci right 1.874421e-04	k: 58	n:400000
KALRN   400000 perm   221 sec   (1812 perm/sec)   p_kst 1.450000e-04   p_cons 3.527100e-01   p_joint 1.450000e-04

Joint ci ratio: 4.978022e-01	ci left: 1.138071e-04	ci right 1.911107e-04	k: 61	n:410000
Cons ci ratio: 8.295218e-03	ci left: 3.511471e-01	ci right 3.540745e-01	k: 144570	n:410000
KS ci ratio: 4.978022e-01	ci left: 1.138071e-04	ci right 1.911107e-04	k: 61	n:410000
KALRN   410000 perm   228 sec   (1800 perm/sec)   p_kst 1.487805e-04   p_cons 3.526098e-01   p_joint 1.487805e-04

Joint ci ratio: 4.824802e-01	ci left: 1.194439e-04	ci right 1.972526e-04	k: 65	n:420000
Cons ci ratio: 8.193824e-03	ci left: 3.512786e-01	ci right 3.541711e-01	k: 148144	n:420000
KS ci ratio: 4.824802e-01	ci left: 1.194439e-04	ci right 1.972526e-04	k: 65	n:420000
KALRN   420000 perm   235 sec   (1789 perm/sec)   p_kst 1.547619e-04   p_cons 3.527238e-01   p_joint 1.547619e-04

Joint ci ratio: 4.753317e-01	ci left: 1.207557e-04	ci right 1.978741e-04	k: 67	n:430000
Cons ci ratio: 8.098204e-03	ci left: 3.512833e-01	ci right 3.541419e-01	k: 151666	n:430000
KS ci ratio: 4.753317e-01	ci left: 1.207557e-04	ci right 1.978741e-04	k: 67	n:430000
KALRN   430000 perm   242 sec   (1778 perm/sec)   p_kst 1.558140e-04   p_cons 3.527116e-01   p_joint 1.558140e-04

Joint ci ratio: 4.718750e-01	ci left: 1.200125e-04	ci right 1.959191e-04	k: 68	n:440000
Cons ci ratio: 8.005217e-03	ci left: 3.513244e-01	ci right 3.541503e-01	k: 155204	n:440000
KS ci ratio: 4.718750e-01	ci left: 1.200125e-04	ci right 1.959191e-04	k: 68	n:440000
KALRN   440000 perm   249 sec   (1766 perm/sec)   p_kst 1.545455e-04   p_cons 3.527364e-01   p_joint 1.545455e-04

Joint ci ratio: 4.718758e-01	ci left: 1.173455e-04	ci right 1.915655e-04	k: 68	n:450000
Cons ci ratio: 7.914976e-03	ci left: 3.513860e-01	ci right 3.541804e-01	k: 158752	n:450000
KS ci ratio: 4.718758e-01	ci left: 1.173455e-04	ci right 1.915655e-04	k: 68	n:450000
KALRN   450000 perm   256 sec   (1755 perm/sec)   p_kst 1.511111e-04   p_cons 3.527822e-01   p_joint 1.511111e-04

Joint ci ratio: 4.684935e-01	ci left: 1.167108e-04	ci right 1.898308e-04	k: 69	n:460000
Cons ci ratio: 7.826193e-03	ci left: 3.515341e-01	ci right 3.542982e-01	k: 162341	n:460000
KS ci ratio: 4.684935e-01	ci left: 1.167108e-04	ci right 1.898308e-04	k: 69	n:460000
KALRN   460000 perm   264 sec   (1744 perm/sec)   p_kst 1.500000e-04   p_cons 3.529152e-01   p_joint 1.500000e-04

Joint ci ratio: 4.684942e-01	ci left: 1.142275e-04	ci right 1.857919e-04	k: 69	n:470000
Cons ci ratio: 7.741989e-03	ci left: 3.515783e-01	ci right 3.543129e-01	k: 165884	n:470000
KS ci ratio: 4.684942e-01	ci left: 1.142275e-04	ci right 1.857919e-04	k: 69	n:470000
KALRN   470000 perm   271 sec   (1733 perm/sec)   p_kst 1.468085e-04   p_cons 3.529447e-01   p_joint 1.468085e-04

Joint ci ratio: 4.651835e-01	ci left: 1.136859e-04	ci right 1.842481e-04	k: 70	n:480000
Cons ci ratio: 7.657721e-03	ci left: 3.517832e-01	ci right 3.544894e-01	k: 169505	n:480000
KS ci ratio: 4.651835e-01	ci left: 1.136859e-04	ci right 1.842481e-04	k: 70	n:480000
KALRN   480000 perm   279 sec   (1721 perm/sec)   p_kst 1.458333e-04   p_cons 3.531354e-01   p_joint 1.458333e-04

Joint ci ratio: 4.619420e-01	ci left: 1.131682e-04	ci right 1.827656e-04	k: 71	n:490000
Cons ci ratio: 7.580444e-03	ci left: 3.517209e-01	ci right 3.543992e-01	k: 172999	n:490000
KS ci ratio: 4.619420e-01	ci left: 1.131682e-04	ci right 1.827656e-04	k: 71	n:490000
KALRN   490000 perm   287 sec   (1709 perm/sec)   p_kst 1.448980e-04   p_cons 3.530592e-01   p_joint 1.448980e-04

Joint ci ratio: 4.587673e-01	ci left: 1.126728e-04	ci right 1.813408e-04	k: 72	n:500000
Cons ci ratio: 7.507202e-03	ci left: 3.515553e-01	ci right 3.542064e-01	k: 176440	n:500000
KS ci ratio: 4.587673e-01	ci left: 1.126728e-04	ci right 1.813408e-04	k: 72	n:500000
KALRN   500000 perm   294 sec   (1698 perm/sec)   p_kst 1.440000e-04   p_cons 3.528800e-01   p_joint 1.440000e-04

Joint ci ratio: 4.556572e-01	ci left: 1.121984e-04	ci right 1.799703e-04	k: 73	n:510000
Cons ci ratio: 7.435243e-03	ci left: 3.514453e-01	ci right 3.540701e-01	k: 179906	n:510000
KS ci ratio: 4.556572e-01	ci left: 1.121984e-04	ci right 1.799703e-04	k: 73	n:510000
KALRN   510000 perm   302 sec   (1687 perm/sec)   p_kst 1.431373e-04   p_cons 3.527569e-01   p_joint 1.431373e-04

Joint ci ratio: 4.496215e-01	ci left: 1.134483e-04	ci right 1.807912e-04	k: 75	n:520000
Cons ci ratio: 7.363204e-03	ci left: 3.514704e-01	ci right 3.540697e-01	k: 183440	n:520000
KS ci ratio: 4.496215e-01	ci left: 1.134483e-04	ci right 1.807912e-04	k: 75	n:520000
KALRN   520000 perm   311 sec   (1673 perm/sec)   p_kst 1.442308e-04   p_cons 3.527692e-01   p_joint 1.442308e-04

Joint ci ratio: 4.466926e-01	ci left: 1.129815e-04	ci right 1.794785e-04	k: 76	n:530000
Cons ci ratio: 7.294606e-03	ci left: 3.514078e-01	ci right 3.539825e-01	k: 186928	n:530000
KS ci ratio: 4.466926e-01	ci left: 1.129815e-04	ci right 1.794785e-04	k: 76	n:530000
KALRN   530000 perm   320 sec   (1658 perm/sec)   p_kst 1.433962e-04   p_cons 3.526943e-01   p_joint 1.433962e-04

Joint ci ratio: 4.410018e-01	ci left: 1.141790e-04	ci right 1.802700e-04	k: 78	n:540000
Cons ci ratio: 7.225662e-03	ci left: 3.514884e-01	ci right 3.540391e-01	k: 190492	n:540000
KS ci ratio: 4.410018e-01	ci left: 1.141790e-04	ci right 1.802700e-04	k: 78	n:540000
KALRN   540000 perm   328 sec   (1648 perm/sec)   p_kst 1.444444e-04   p_cons 3.527630e-01   p_joint 1.444444e-04

Joint ci ratio: 4.328589e-01	ci left: 1.169575e-04	ci right 1.830433e-04	k: 81	n:550000
Cons ci ratio: 7.162258e-03	ci left: 3.513354e-01	ci right 3.538625e-01	k: 193929	n:550000
KS ci ratio: 4.328589e-01	ci left: 1.169575e-04	ci right 1.830433e-04	k: 81	n:550000
KALRN   550000 perm   336 sec   (1638 perm/sec)   p_kst 1.472727e-04   p_cons 3.525982e-01   p_joint 1.472727e-04

Joint ci ratio: 4.328595e-01	ci left: 1.148689e-04	ci right 1.797747e-04	k: 81	n:560000
Cons ci ratio: 7.097383e-03	ci left: 3.513878e-01	ci right 3.538923e-01	k: 197478	n:560000
KS ci ratio: 4.328595e-01	ci left: 1.148689e-04	ci right 1.797747e-04	k: 81	n:560000
KALRN   560000 perm   345 sec   (1624 perm/sec)   p_kst 1.446429e-04   p_cons 3.526393e-01   p_joint 1.446429e-04

Joint ci ratio: 4.302442e-01	ci left: 1.144174e-04	ci right 1.785647e-04	k: 82	n:570000
Cons ci ratio: 7.036050e-03	ci left: 3.513210e-01	ci right 3.538033e-01	k: 200960	n:570000
KS ci ratio: 4.302442e-01	ci left: 1.144174e-04	ci right 1.785647e-04	k: 82	n:570000
KALRN   570000 perm   354 sec   (1612 perm/sec)   p_kst 1.438596e-04   p_cons 3.525614e-01   p_joint 1.438596e-04

Joint ci ratio: 4.302447e-01	ci left: 1.124447e-04	ci right 1.754860e-04	k: 82	n:580000
Cons ci ratio: 6.977888e-03	ci left: 3.511515e-01	ci right 3.536121e-01	k: 204381	n:580000
KS ci ratio: 4.302447e-01	ci left: 1.124447e-04	ci right 1.754860e-04	k: 82	n:580000
KALRN   580000 perm   362 sec   (1602 perm/sec)   p_kst 1.413793e-04   p_cons 3.523810e-01   p_joint 1.413793e-04

Joint ci ratio: 4.302453e-01	ci left: 1.105388e-04	ci right 1.725117e-04	k: 82	n:590000
Cons ci ratio: 6.916929e-03	ci left: 3.512656e-01	ci right 3.537054e-01	k: 207966	n:590000
KS ci ratio: 4.302453e-01	ci left: 1.105388e-04	ci right 1.725117e-04	k: 82	n:590000
KALRN   590000 perm   371 sec   (1591 perm/sec)   p_kst 1.389831e-04   p_cons 3.524847e-01   p_joint 1.389831e-04

Joint ci ratio: 4.276768e-01	ci left: 1.101832e-04	ci right 1.714821e-04	k: 83	n:600000
Cons ci ratio: 6.859668e-03	ci left: 3.512344e-01	ci right 3.536537e-01	k: 211466	n:600000
KS ci ratio: 4.276768e-01	ci left: 1.101832e-04	ci right 1.714821e-04	k: 83	n:600000
KALRN   600000 perm   380 sec   (1577 perm/sec)   p_kst 1.383333e-04   p_cons 3.524433e-01   p_joint 1.383333e-04

Joint ci ratio: 4.226743e-01	ci left: 1.113047e-04	ci right 1.722985e-04	k: 85	n:610000
Cons ci ratio: 6.802268e-03	ci left: 3.513075e-01	ci right 3.537070e-01	k: 215029	n:610000
KS ci ratio: 4.226743e-01	ci left: 1.113047e-04	ci right 1.722985e-04	k: 85	n:610000
KALRN   610000 perm   390 sec   (1566 perm/sec)   p_kst 1.393443e-04   p_cons 3.525066e-01   p_joint 1.393443e-04

Joint ci ratio: 4.226748e-01	ci left: 1.095095e-04	ci right 1.695195e-04	k: 85	n:620000
Cons ci ratio: 6.749789e-03	ci left: 3.511415e-01	ci right 3.535212e-01	k: 218445	n:620000
KS ci ratio: 4.226748e-01	ci left: 1.095095e-04	ci right 1.695195e-04	k: 85	n:620000
KALRN   620000 perm   398 sec   (1556 perm/sec)   p_kst 1.370968e-04   p_cons 3.523306e-01   p_joint 1.370968e-04

Joint ci ratio: 4.202388e-01	ci left: 1.091901e-04	ci right 1.685835e-04	k: 86	n:630000
Cons ci ratio: 6.696525e-03	ci left: 3.511156e-01	ci right 3.534763e-01	k: 221946	n:630000
KS ci ratio: 4.202388e-01	ci left: 1.091901e-04	ci right 1.685835e-04	k: 86	n:630000
KALRN   630000 perm   408 sec   (1546 perm/sec)   p_kst 1.365079e-04   p_cons 3.522952e-01   p_joint 1.365079e-04

Joint ci ratio: 4.178443e-01	ci left: 1.088818e-04	ci right 1.676757e-04	k: 87	n:640000
Cons ci ratio: 6.646618e-03	ci left: 3.509453e-01	ci right 3.532872e-01	k: 225354	n:640000
KS ci ratio: 4.178443e-01	ci left: 1.088818e-04	ci right 1.676757e-04	k: 87	n:640000
KALRN   640000 perm   416 sec   (1537 perm/sec)   p_kst 1.359375e-04   p_cons 3.521156e-01   p_joint 1.359375e-04

Joint ci ratio: 4.154904e-01	ci left: 1.085838e-04	ci right 1.667950e-04	k: 88	n:650000
Cons ci ratio: 6.594873e-03	ci left: 3.509834e-01	ci right 3.533072e-01	k: 228894	n:650000
KS ci ratio: 4.154904e-01	ci left: 1.085838e-04	ci right 1.667950e-04	k: 88	n:650000
KALRN   650000 perm   426 sec   (1526 perm/sec)   p_kst 1.353846e-04   p_cons 3.521446e-01   p_joint 1.353846e-04

Joint ci ratio: 4.131758e-01	ci left: 1.082958e-04	ci right 1.659401e-04	k: 89	n:660000
Cons ci ratio: 6.547036e-03	ci left: 3.508310e-01	ci right 3.531369e-01	k: 232309	n:660000
KS ci ratio: 4.131758e-01	ci left: 1.082958e-04	ci right 1.659401e-04	k: 89	n:660000
KALRN   660000 perm   435 sec   (1517 perm/sec)   p_kst 1.348485e-04   p_cons 3.519833e-01   p_joint 1.348485e-04

Joint ci ratio: 4.086599e-01	ci left: 1.093559e-04	ci right 1.667554e-04	k: 91	n:670000
Cons ci ratio: 6.498267e-03	ci left: 3.508205e-01	ci right 3.531091e-01	k: 235816	n:670000
KS ci ratio: 4.086599e-01	ci left: 1.093559e-04	ci right 1.667554e-04	k: 91	n:670000
KALRN   670000 perm   445 sec   (1506 perm/sec)   p_kst 1.358209e-04   p_cons 3.519642e-01   p_joint 1.358209e-04

Joint ci ratio: 4.064570e-01	ci left: 1.090675e-04	ci right 1.659237e-04	k: 92	n:680000
Cons ci ratio: 6.451175e-03	ci left: 3.507678e-01	ci right 3.530394e-01	k: 239294	n:680000
KS ci ratio: 4.064570e-01	ci left: 1.090675e-04	ci right 1.659237e-04	k: 92	n:680000
KALRN   680000 perm   454 sec   (1497 perm/sec)   p_kst 1.352941e-04   p_cons 3.519029e-01   p_joint 1.352941e-04

Joint ci ratio: 4.021555e-01	ci left: 1.100906e-04	ci right 1.667108e-04	k: 94	n:690000
Cons ci ratio: 6.403505e-03	ci left: 3.508296e-01	ci right 3.530847e-01	k: 242850	n:690000
KS ci ratio: 4.021555e-01	ci left: 1.100906e-04	ci right 1.667108e-04	k: 94	n:690000
KALRN   690000 perm   464 sec   (1488 perm/sec)   p_kst 1.362319e-04   p_cons 3.519565e-01   p_joint 1.362319e-04

Joint ci ratio: 4.000556e-01	ci left: 1.098023e-04	ci right 1.659012e-04	k: 95	n:700000
Cons ci ratio: 6.358269e-03	ci left: 3.507897e-01	ci right 3.530286e-01	k: 246336	n:700000
KS ci ratio: 4.000556e-01	ci left: 1.098023e-04	ci right 1.659012e-04	k: 95	n:700000
KALRN   700000 perm   475 sec   (1473 perm/sec)   p_kst 1.357143e-04   p_cons 3.519086e-01   p_joint 1.357143e-04

Joint ci ratio: 3.979882e-01	ci left: 1.095229e-04	ci right 1.651136e-04	k: 96	n:710000
Cons ci ratio: 6.315423e-03	ci left: 3.506469e-01	ci right 3.528698e-01	k: 249748	n:710000
KS ci ratio: 3.979882e-01	ci left: 1.095229e-04	ci right 1.651136e-04	k: 96	n:710000
KALRN   710000 perm   485 sec   (1463 perm/sec)   p_kst 1.352113e-04   p_cons 3.517577e-01   p_joint 1.352113e-04

Joint ci ratio: 3.979886e-01	ci left: 1.080017e-04	ci right 1.628204e-04	k: 96	n:720000
Cons ci ratio: 6.272092e-03	ci left: 3.506053e-01	ci right 3.528126e-01	k: 253230	n:720000
KS ci ratio: 3.979886e-01	ci left: 1.080017e-04	ci right 1.628204e-04	k: 96	n:720000
KALRN   720000 perm   495 sec   (1456 perm/sec)   p_kst 1.333333e-04   p_cons 3.517083e-01   p_joint 1.333333e-04

Joint ci ratio: 3.979890e-01	ci left: 1.065222e-04	ci right 1.605900e-04	k: 96	n:730000
Cons ci ratio: 6.229360e-03	ci left: 3.505854e-01	ci right 3.527775e-01	k: 256727	n:730000
KS ci ratio: 3.979890e-01	ci left: 1.065222e-04	ci right 1.605900e-04	k: 96	n:730000
KALRN   730000 perm   505 sec   (1447 perm/sec)   p_kst 1.315068e-04   p_cons 3.516808e-01   p_joint 1.315068e-04

Joint ci ratio: 3.979893e-01	ci left: 1.050827e-04	ci right 1.584199e-04	k: 96	n:740000
Cons ci ratio: 6.186665e-03	ci left: 3.506268e-01	ci right 3.528041e-01	k: 260269	n:740000
KS ci ratio: 3.979893e-01	ci left: 1.050827e-04	ci right 1.584199e-04	k: 96	n:740000
KALRN   740000 perm   515 sec   (1438 perm/sec)   p_kst 1.297297e-04   p_cons 3.517149e-01   p_joint 1.297297e-04

Joint ci ratio: 3.959537e-01	ci left: 1.048818e-04	ci right 1.577735e-04	k: 97	n:750000
Cons ci ratio: 6.145034e-03	ci left: 3.506526e-01	ci right 3.528153e-01	k: 263800	n:750000
KS ci ratio: 3.959537e-01	ci left: 1.048818e-04	ci right 1.577735e-04	k: 97	n:750000
KALRN   750000 perm   525 sec   (1429 perm/sec)   p_kst 1.293333e-04   p_cons 3.517333e-01   p_joint 1.293333e-04

Joint ci ratio: 3.939489e-01	ci left: 1.046869e-04	ci right 1.571433e-04	k: 98	n:760000
Cons ci ratio: 6.104619e-03	ci left: 3.506487e-01	ci right 3.527971e-01	k: 267309	n:760000
KS ci ratio: 3.939489e-01	ci left: 1.046869e-04	ci right 1.571433e-04	k: 98	n:760000
KALRN   760000 perm   535 sec   (1421 perm/sec)   p_kst 1.289474e-04   p_cons 3.517224e-01   p_joint 1.289474e-04

Joint ci ratio: 3.919743e-01	ci left: 1.044977e-04	ci right 1.565289e-04	k: 99	n:770000
Cons ci ratio: 6.065147e-03	ci left: 3.506334e-01	ci right 3.527677e-01	k: 270809	n:770000
KS ci ratio: 3.919743e-01	ci left: 1.044977e-04	ci right 1.565289e-04	k: 99	n:770000
KALRN   770000 perm   545 sec   (1413 perm/sec)   p_kst 1.285714e-04   p_cons 3.517000e-01   p_joint 1.285714e-04

Joint ci ratio: 3.881122e-01	ci left: 1.054706e-04	ci right 1.573365e-04	k: 101	n:780000
Cons ci ratio: 6.025448e-03	ci left: 3.506928e-01	ci right 3.528135e-01	k: 274367	n:780000
KS ci ratio: 3.881122e-01	ci left: 1.054706e-04	ci right 1.573365e-04	k: 101	n:780000
KALRN   780000 perm   555 sec   (1406 perm/sec)   p_kst 1.294872e-04   p_cons 3.517526e-01   p_joint 1.294872e-04

Joint ci ratio: 3.881125e-01	ci left: 1.041355e-04	ci right 1.553449e-04	k: 101	n:790000
Cons ci ratio: 5.987682e-03	ci left: 3.506621e-01	ci right 3.527693e-01	k: 277855	n:790000
KS ci ratio: 3.881125e-01	ci left: 1.041355e-04	ci right 1.553449e-04	k: 101	n:790000
KALRN   790000 perm   566 sec   (1396 perm/sec)   p_kst 1.278481e-04   p_cons 3.517152e-01   p_joint 1.278481e-04

Joint ci ratio: 3.862240e-01	ci left: 1.039622e-04	ci right 1.547742e-04	k: 102	n:800000
Cons ci ratio: 5.950519e-03	ci left: 3.506398e-01	ci right 3.527338e-01	k: 281349	n:800000
KS ci ratio: 3.862240e-01	ci left: 1.039622e-04	ci right 1.547742e-04	k: 102	n:800000
KALRN   800000 perm   577 sec   (1385 perm/sec)   p_kst 1.275000e-04   p_cons 3.516862e-01   p_joint 1.275000e-04

Joint ci ratio: 3.862243e-01	ci left: 1.026787e-04	ci right 1.528634e-04	k: 102	n:810000
Cons ci ratio: 5.914392e-03	ci left: 3.505910e-01	ci right 3.526718e-01	k: 284821	n:810000
KS ci ratio: 3.862243e-01	ci left: 1.026787e-04	ci right 1.528634e-04	k: 102	n:810000
KALRN   810000 perm   589 sec   (1375 perm/sec)   p_kst 1.259259e-04   p_cons 3.516309e-01   p_joint 1.259259e-04

Joint ci ratio: 3.807192e-01	ci left: 1.047324e-04	ci right 1.550088e-04	k: 105	n:820000
Cons ci ratio: 5.877374e-03	ci left: 3.506627e-01	ci right 3.527310e-01	k: 288391	n:820000
KS ci ratio: 3.807192e-01	ci left: 1.047324e-04	ci right 1.550088e-04	k: 105	n:820000
KALRN   820000 perm   601 sec   (1365 perm/sec)   p_kst 1.280488e-04   p_cons 3.516963e-01   p_joint 1.280488e-04

Joint ci ratio: 3.807195e-01	ci left: 1.034705e-04	ci right 1.531412e-04	k: 105	n:830000
Cons ci ratio: 5.842323e-03	ci left: 3.506329e-01	ci right 3.526886e-01	k: 291878	n:830000
KS ci ratio: 3.807195e-01	ci left: 1.034705e-04	ci right 1.531412e-04	k: 105	n:830000
KALRN   830000 perm   612 sec   (1357 perm/sec)   p_kst 1.265060e-04   p_cons 3.516602e-01   p_joint 1.265060e-04

Joint ci ratio: 3.789363e-01	ci left: 1.033155e-04	ci right 1.526217e-04	k: 106	n:840000
Cons ci ratio: 5.807438e-03	ci left: 3.506395e-01	ci right 3.526829e-01	k: 295395	n:840000
KS ci ratio: 3.789363e-01	ci left: 1.033155e-04	ci right 1.526217e-04	k: 106	n:840000
KALRN   840000 perm   622 sec   (1350 perm/sec)   p_kst 1.261905e-04   p_cons 3.516607e-01   p_joint 1.261905e-04

Joint ci ratio: 3.771780e-01	ci left: 1.031647e-04	ci right 1.521139e-04	k: 107	n:850000
Cons ci ratio: 5.773363e-03	ci left: 3.506307e-01	ci right 3.526620e-01	k: 298899	n:850000
KS ci ratio: 3.771780e-01	ci left: 1.031647e-04	ci right 1.521139e-04	k: 107	n:850000
KALRN   850000 perm   633 sec   (1342 perm/sec)   p_kst 1.258824e-04   p_cons 3.516459e-01   p_joint 1.258824e-04

Joint ci ratio: 3.754439e-01	ci left: 1.030180e-04	ci right 1.516175e-04	k: 108	n:860000
Cons ci ratio: 5.739545e-03	ci left: 3.506489e-01	ci right 3.526684e-01	k: 302426	n:860000
KS ci ratio: 3.754439e-01	ci left: 1.030180e-04	ci right 1.516175e-04	k: 108	n:860000
KALRN   860000 perm   645 sec   (1334 perm/sec)   p_kst 1.255814e-04   p_cons 3.516581e-01   p_joint 1.255814e-04

Joint ci ratio: 3.754442e-01	ci left: 1.018338e-04	ci right 1.498747e-04	k: 108	n:870000
Cons ci ratio: 5.706875e-03	ci left: 3.506219e-01	ci right 3.526297e-01	k: 305914	n:870000
KS ci ratio: 3.754442e-01	ci left: 1.018338e-04	ci right 1.498747e-04	k: 108	n:870000
KALRN   870000 perm   656 sec   (1327 perm/sec)   p_kst 1.241379e-04   p_cons 3.516253e-01   p_joint 1.241379e-04

Joint ci ratio: 3.720463e-01	ci left: 1.027359e-04	ci right 1.506569e-04	k: 110	n:880000
Cons ci ratio: 5.673837e-03	ci left: 3.506693e-01	ci right 3.526657e-01	k: 309467	n:880000
KS ci ratio: 3.720463e-01	ci left: 1.027359e-04	ci right 1.506569e-04	k: 110	n:880000
KALRN   880000 perm   667 sec   (1320 perm/sec)   p_kst 1.250000e-04   p_cons 3.516670e-01   p_joint 1.250000e-04

Joint ci ratio: 3.703817e-01	ci left: 1.026003e-04	ci right 1.501921e-04	k: 111	n:890000
Cons ci ratio: 5.641867e-03	ci left: 3.506753e-01	ci right 3.526605e-01	k: 312984	n:890000
KS ci ratio: 3.703817e-01	ci left: 1.026003e-04	ci right 1.501921e-04	k: 111	n:890000
KALRN   890000 perm   677 sec   (1314 perm/sec)   p_kst 1.247191e-04   p_cons 3.516674e-01   p_joint 1.247191e-04

Joint ci ratio: 3.687392e-01	ci left: 1.024682e-04	ci right 1.497371e-04	k: 112	n:900000
Cons ci ratio: 5.610049e-03	ci left: 3.507123e-01	ci right 3.526864e-01	k: 316529	n:900000
KS ci ratio: 3.687392e-01	ci left: 1.024682e-04	ci right 1.497371e-04	k: 112	n:900000
KALRN   900000 perm   689 sec   (1307 perm/sec)   p_kst 1.244444e-04   p_cons 3.516989e-01   p_joint 1.244444e-04

Joint ci ratio: 3.687395e-01	ci left: 1.013422e-04	ci right 1.480917e-04	k: 112	n:910000
Cons ci ratio: 5.579489e-03	ci left: 3.506892e-01	ci right 3.526524e-01	k: 320020	n:910000
KS ci ratio: 3.687395e-01	ci left: 1.013422e-04	ci right 1.480917e-04	k: 112	n:910000
KALRN   910000 perm   700 sec   (1300 perm/sec)   p_kst 1.230769e-04   p_cons 3.516703e-01   p_joint 1.230769e-04

Joint ci ratio: 3.655188e-01	ci left: 1.022140e-04	ci right 1.488556e-04	k: 114	n:920000
Cons ci ratio: 5.549555e-03	ci left: 3.506558e-01	ci right 3.526082e-01	k: 323501	n:920000
KS ci ratio: 3.655188e-01	ci left: 1.022140e-04	ci right 1.488556e-04	k: 114	n:920000
KALRN   920000 perm   711 sec   (1293 perm/sec)   p_kst 1.239130e-04   p_cons 3.516315e-01   p_joint 1.239130e-04

Joint ci ratio: 3.593226e-01	ci left: 1.050244e-04	ci right 1.519460e-04	k: 118	n:930000
Cons ci ratio: 5.519447e-03	ci left: 3.506768e-01	ci right 3.526187e-01	k: 327032	n:930000
KS ci ratio: 3.593226e-01	ci left: 1.050244e-04	ci right 1.519460e-04	k: 118	n:930000
KALRN   930000 perm   723 sec   (1287 perm/sec)   p_kst 1.268817e-04   p_cons 3.516473e-01   p_joint 1.268817e-04

Joint ci ratio: 3.578224e-01	ci left: 1.048752e-04	ci right 1.514888e-04	k: 119	n:940000
Cons ci ratio: 5.490247e-03	ci left: 3.506623e-01	ci right 3.525939e-01	k: 330530	n:940000
KS ci ratio: 3.578224e-01	ci left: 1.048752e-04	ci right 1.514888e-04	k: 119	n:940000
KALRN   940000 perm   734 sec   (1281 perm/sec)   p_kst 1.265957e-04   p_cons 3.516277e-01   p_joint 1.265957e-04

Joint ci ratio: 3.563408e-01	ci left: 1.047294e-04	ci right 1.510409e-04	k: 120	n:950000
Cons ci ratio: 5.461038e-03	ci left: 3.506871e-01	ci right 3.526085e-01	k: 334065	n:950000
KS ci ratio: 3.563408e-01	ci left: 1.047294e-04	ci right 1.510409e-04	k: 120	n:950000
KALRN   950000 perm   746 sec   (1273 perm/sec)   p_kst 1.263158e-04   p_cons 3.516474e-01   p_joint 1.263158e-04

Joint ci ratio: 3.563410e-01	ci left: 1.036385e-04	ci right 1.494675e-04	k: 120	n:960000
Cons ci ratio: 5.432502e-03	ci left: 3.506937e-01	ci right 3.526051e-01	k: 337583	n:960000
KS ci ratio: 3.563410e-01	ci left: 1.036385e-04	ci right 1.494675e-04	k: 120	n:960000
KALRN   960000 perm   758 sec   (1266 perm/sec)   p_kst 1.250000e-04   p_cons 3.516490e-01   p_joint 1.250000e-04

Joint ci ratio: 3.563412e-01	ci left: 1.025700e-04	ci right 1.479266e-04	k: 120	n:970000
Cons ci ratio: 5.404714e-03	ci left: 3.506745e-01	ci right 3.525759e-01	k: 341076	n:970000
KS ci ratio: 3.563412e-01	ci left: 1.025700e-04	ci right 1.479266e-04	k: 120	n:970000
KALRN   970000 perm   770 sec   (1260 perm/sec)   p_kst 1.237113e-04   p_cons 3.516247e-01   p_joint 1.237113e-04

Joint ci ratio: 3.534321e-01	ci left: 1.033823e-04	ci right 1.486392e-04	k: 122	n:980000
Cons ci ratio: 5.376470e-03	ci left: 3.507301e-01	ci right 3.526218e-01	k: 344642	n:980000
KS ci ratio: 3.534321e-01	ci left: 1.033823e-04	ci right 1.486392e-04	k: 122	n:980000
KALRN   980000 perm   783 sec   (1252 perm/sec)   p_kst 1.244898e-04   p_cons 3.516755e-01   p_joint 1.244898e-04

Joint ci ratio: 3.505931e-01	ci left: 1.041796e-04	ci right 1.493359e-04	k: 124	n:990000
Cons ci ratio: 5.348640e-03	ci left: 3.507866e-01	ci right 3.526688e-01	k: 348210	n:990000
KS ci ratio: 3.505931e-01	ci left: 1.041796e-04	ci right 1.493359e-04	k: 124	n:990000
KALRN   990000 perm   796 sec   (1243 perm/sec)   p_kst 1.252525e-04   p_cons 3.517273e-01   p_joint 1.252525e-04

Joint ci ratio: 3.505934e-01	ci left: 1.031378e-04	ci right 1.478426e-04	k: 124	n:1000000
Cons ci ratio: 5.321460e-03	ci left: 3.508230e-01	ci right 3.526958e-01	k: 351759	n:1000000
KS ci ratio: 3.505934e-01	ci left: 1.031378e-04	ci right 1.478426e-04	k: 124	n:1000000
KALRN   1000000 perm   811 sec   (1233 perm/sec)   p_kst 1.240000e-04   p_cons 3.517590e-01   p_joint 1.240000e-04

Joint ci ratio: 3.464602e-01	ci left: 1.048270e-04	ci right 1.496080e-04	k: 127	n:1010000
Cons ci ratio: 5.294356e-03	ci left: 3.508874e-01	ci right 3.527510e-01	k: 355337	n:1010000
KS ci ratio: 3.464602e-01	ci left: 1.048270e-04	ci right 1.496080e-04	k: 127	n:1010000
KALRN   1010000 perm   824 sec   (1225 perm/sec)   p_kst 1.257426e-04   p_cons 3.518188e-01   p_joint 1.257426e-04

Joint ci ratio: 3.451148e-01	ci left: 1.046945e-04	ci right 1.492065e-04	k: 128	n:1020000
Cons ci ratio: 5.268466e-03	ci left: 3.508810e-01	ci right 3.527355e-01	k: 358844	n:1020000
KS ci ratio: 3.451148e-01	ci left: 1.046945e-04	ci right 1.492065e-04	k: 128	n:1020000
KALRN   1020000 perm   839 sec   (1215 perm/sec)   p_kst 1.254902e-04   p_cons 3.518078e-01   p_joint 1.254902e-04

Joint ci ratio: 3.437849e-01	ci left: 1.045649e-04	ci right 1.488124e-04	k: 129	n:1030000
Cons ci ratio: 5.242327e-03	ci left: 3.509291e-01	ci right 3.527746e-01	k: 362407	n:1030000
KS ci ratio: 3.437849e-01	ci left: 1.045649e-04	ci right 1.488124e-04	k: 129	n:1030000
KALRN   1030000 perm   852 sec   (1209 perm/sec)   p_kst 1.252427e-04   p_cons 3.518515e-01   p_joint 1.252427e-04

Joint ci ratio: 3.386144e-01	ci left: 1.070762e-04	ci right 1.515559e-04	k: 133	n:1040000
Cons ci ratio: 5.216354e-03	ci left: 3.509956e-01	ci right 3.528322e-01	k: 365990	n:1040000
KS ci ratio: 3.386144e-01	ci left: 1.070762e-04	ci right 1.515559e-04	k: 133	n:1040000
KALRN   1040000 perm   864 sec   (1203 perm/sec)   p_kst 1.278846e-04   p_cons 3.519135e-01   p_joint 1.278846e-04

Joint ci ratio: 3.361153e-01	ci left: 1.077998e-04	ci right 1.521780e-04	k: 135	n:1050000
Cons ci ratio: 5.191185e-03	ci left: 3.510236e-01	ci right 3.528515e-01	k: 369534	n:1050000
KS ci ratio: 3.361153e-01	ci left: 1.077998e-04	ci right 1.521780e-04	k: 135	n:1050000
KALRN   1050000 perm   877 sec   (1197 perm/sec)   p_kst 1.285714e-04   p_cons 3.519371e-01   p_joint 1.285714e-04

Joint ci ratio: 3.336707e-01	ci left: 1.085110e-04	ci right 1.527873e-04	k: 137	n:1060000
Cons ci ratio: 5.166720e-03	ci left: 3.510210e-01	ci right 3.528402e-01	k: 373046	n:1060000
KS ci ratio: 3.336707e-01	ci left: 1.085110e-04	ci right 1.527873e-04	k: 137	n:1060000
KALRN   1060000 perm   890 sec   (1192 perm/sec)   p_kst 1.292453e-04   p_cons 3.519302e-01   p_joint 1.292453e-04

Joint ci ratio: 3.289371e-01	ci left: 1.109243e-04	ci right 1.554074e-04	k: 141	n:1070000
Cons ci ratio: 5.142965e-03	ci left: 3.509857e-01	ci right 3.527964e-01	k: 376523	n:1070000
KS ci ratio: 3.289371e-01	ci left: 1.109243e-04	ci right 1.554074e-04	k: 141	n:1070000
KALRN   1070000 perm   904 sec   (1184 perm/sec)   p_kst 1.317757e-04   p_cons 3.518907e-01   p_joint 1.317757e-04

Joint ci ratio: 3.289373e-01	ci left: 1.098972e-04	ci right 1.539685e-04	k: 141	n:1080000
Cons ci ratio: 5.119005e-03	ci left: 3.509983e-01	ci right 3.528006e-01	k: 380051	n:1080000
KS ci ratio: 3.289373e-01	ci left: 1.098972e-04	ci right 1.539685e-04	k: 141	n:1080000
KALRN   1080000 perm   917 sec   (1178 perm/sec)   p_kst 1.305556e-04   p_cons 3.518991e-01   p_joint 1.305556e-04

Joint ci ratio: 3.277852e-01	ci left: 1.097308e-04	ci right 1.535487e-04	k: 142	n:1090000
Cons ci ratio: 5.096064e-03	ci left: 3.509493e-01	ci right 3.527432e-01	k: 383512	n:1090000
KS ci ratio: 3.277852e-01	ci left: 1.097308e-04	ci right 1.535487e-04	k: 142	n:1090000
KALRN   1090000 perm   930 sec   (1172 perm/sec)   p_kst 1.302752e-04   p_cons 3.518459e-01   p_joint 1.302752e-04

Joint ci ratio: 3.277854e-01	ci left: 1.087333e-04	ci right 1.521529e-04	k: 142	n:1100000
Cons ci ratio: 5.073853e-03	ci left: 3.508630e-01	ci right 3.526487e-01	k: 386931	n:1100000
KS ci ratio: 3.277854e-01	ci left: 1.087333e-04	ci right 1.521529e-04	k: 142	n:1100000
KALRN   1100000 perm   942 sec   (1167 perm/sec)   p_kst 1.290909e-04   p_cons 3.517555e-01   p_joint 1.290909e-04

Joint ci ratio: 3.255169e-01	ci left: 1.094077e-04	ci right 1.527311e-04	k: 144	n:1110000
Cons ci ratio: 5.050682e-03	ci left: 3.508909e-01	ci right 3.526685e-01	k: 390475	n:1110000
KS ci ratio: 3.255169e-01	ci left: 1.094077e-04	ci right 1.527311e-04	k: 144	n:1110000
KALRN   1110000 perm   955 sec   (1162 perm/sec)   p_kst 1.297297e-04   p_cons 3.517793e-01   p_joint 1.297297e-04

Joint ci ratio: 3.255171e-01	ci left: 1.084309e-04	ci right 1.513675e-04	k: 144	n:1120000
Cons ci ratio: 5.029047e-03	ci left: 3.508076e-01	ci right 3.525771e-01	k: 393895	n:1120000
KS ci ratio: 3.255171e-01	ci left: 1.084309e-04	ci right 1.513675e-04	k: 144	n:1120000
KALRN   1120000 perm   969 sec   (1155 perm/sec)   p_kst 1.285714e-04   p_cons 3.516920e-01   p_joint 1.285714e-04

Joint ci ratio: 3.255173e-01	ci left: 1.074713e-04	ci right 1.500280e-04	k: 144	n:1130000
Cons ci ratio: 5.006667e-03	ci left: 3.508186e-01	ci right 3.525803e-01	k: 397420	n:1130000
KS ci ratio: 3.255173e-01	ci left: 1.074713e-04	ci right 1.500280e-04	k: 144	n:1130000
KALRN   1130000 perm   983 sec   (1149 perm/sec)   p_kst 1.274336e-04   p_cons 3.516991e-01   p_joint 1.274336e-04

Joint ci ratio: 3.222010e-01	ci left: 1.089463e-04	ci right 1.515567e-04	k: 147	n:1140000
Cons ci ratio: 4.985168e-03	ci left: 3.507761e-01	ci right 3.525300e-01	k: 400884	n:1140000
KS ci ratio: 3.222010e-01	ci left: 1.089463e-04	ci right 1.515567e-04	k: 147	n:1140000
KALRN   1140000 perm   996 sec   (1144 perm/sec)   p_kst 1.289474e-04   p_cons 3.516526e-01   p_joint 1.289474e-04

Joint ci ratio: 3.222011e-01	ci left: 1.079989e-04	ci right 1.502388e-04	k: 147	n:1150000
Cons ci ratio: 4.964217e-03	ci left: 3.507090e-01	ci right 3.524552e-01	k: 404319	n:1150000
KS ci ratio: 3.222011e-01	ci left: 1.079989e-04	ci right 1.502388e-04	k: 147	n:1150000
KALRN   1150000 perm   1009 sec   (1139 perm/sec)   p_kst 1.278261e-04   p_cons 3.515817e-01   p_joint 1.278261e-04

Joint ci ratio: 3.211181e-01	ci left: 1.078603e-04	ci right 1.498751e-04	k: 148	n:1160000
Cons ci ratio: 4.942604e-03	ci left: 3.507285e-01	ci right 3.524671e-01	k: 407853	n:1160000
KS ci ratio: 3.211181e-01	ci left: 1.078603e-04	ci right 1.498751e-04	k: 148	n:1160000
KALRN   1160000 perm   1023 sec   (1134 perm/sec)   p_kst 1.275862e-04   p_cons 3.515974e-01   p_joint 1.275862e-04

Joint ci ratio: 3.189844e-01	ci left: 1.085106e-04	ci right 1.504403e-04	k: 150	n:1170000
Cons ci ratio: 4.921510e-03	ci left: 3.507254e-01	ci right 3.524566e-01	k: 411361	n:1170000
KS ci ratio: 3.189844e-01	ci left: 1.085106e-04	ci right 1.504403e-04	k: 150	n:1170000
KALRN   1170000 perm   1037 sec   (1128 perm/sec)   p_kst 1.282051e-04   p_cons 3.515906e-01   p_joint 1.282051e-04

Joint ci ratio: 3.189845e-01	ci left: 1.075910e-04	ci right 1.491654e-04	k: 150	n:1180000
Cons ci ratio: 4.900775e-03	ci left: 3.507139e-01	ci right 3.524377e-01	k: 414859	n:1180000
KS ci ratio: 3.189845e-01	ci left: 1.075910e-04	ci right 1.491654e-04	k: 150	n:1180000
KALRN   1180000 perm   1051 sec   (1123 perm/sec)   p_kst 1.271186e-04   p_cons 3.515754e-01   p_joint 1.271186e-04

Joint ci ratio: 3.189847e-01	ci left: 1.066868e-04	ci right 1.479120e-04	k: 150	n:1190000
Cons ci ratio: 4.879859e-03	ci left: 3.507438e-01	ci right 3.524603e-01	k: 418406	n:1190000
KS ci ratio: 3.189847e-01	ci left: 1.066868e-04	ci right 1.479120e-04	k: 150	n:1190000
KALRN   1190000 perm   1065 sec   (1118 perm/sec)   p_kst 1.260504e-04   p_cons 3.516017e-01   p_joint 1.260504e-04

Joint ci ratio: 3.189849e-01	ci left: 1.057978e-04	ci right 1.466794e-04	k: 150	n:1200000
Cons ci ratio: 4.858969e-03	ci left: 3.507956e-01	ci right 3.525051e-01	k: 421980	n:1200000
KS ci ratio: 3.189849e-01	ci left: 1.057978e-04	ci right 1.466794e-04	k: 150	n:1200000
KALRN   1200000 perm   1078 sec   (1113 perm/sec)   p_kst 1.250000e-04   p_cons 3.516500e-01   p_joint 1.250000e-04

Joint ci ratio: 3.168930e-01	ci left: 1.064444e-04	ci right 1.472515e-04	k: 152	n:1210000
Cons ci ratio: 4.839590e-03	ci left: 3.507294e-01	ci right 3.524317e-01	k: 425412	n:1210000
KS ci ratio: 3.168930e-01	ci left: 1.064444e-04	ci right 1.472515e-04	k: 152	n:1210000
KALRN   1210000 perm   1093 sec   (1107 perm/sec)   p_kst 1.256198e-04   p_cons 3.515802e-01   p_joint 1.256198e-04

Joint ci ratio: 3.148418e-01	ci left: 1.070813e-04	ci right 1.478134e-04	k: 154	n:1220000
Cons ci ratio: 4.819973e-03	ci left: 3.507085e-01	ci right 3.524037e-01	k: 428898	n:1220000
KS ci ratio: 3.148418e-01	ci left: 1.070813e-04	ci right 1.478134e-04	k: 154	n:1220000
KALRN   1220000 perm   1109 sec   (1100 perm/sec)   p_kst 1.262295e-04   p_cons 3.515557e-01   p_joint 1.262295e-04

Joint ci ratio: 3.138312e-01	ci left: 1.069596e-04	ci right 1.474886e-04	k: 155	n:1230000
Cons ci ratio: 4.799891e-03	ci left: 3.507545e-01	ci right 3.524429e-01	k: 432466	n:1230000
KS ci ratio: 3.138312e-01	ci left: 1.069596e-04	ci right 1.474886e-04	k: 155	n:1230000
KALRN   1230000 perm   1123 sec   (1095 perm/sec)   p_kst 1.260163e-04   p_cons 3.515984e-01   p_joint 1.260163e-04

Joint ci ratio: 3.118385e-01	ci left: 1.075834e-04	ci right 1.480383e-04	k: 157	n:1240000
Cons ci ratio: 4.779965e-03	ci left: 3.508087e-01	ci right 3.524904e-01	k: 436045	n:1240000
KS ci ratio: 3.118385e-01	ci left: 1.075834e-04	ci right 1.480383e-04	k: 157	n:1240000
KALRN   1240000 perm   1138 sec   (1090 perm/sec)   p_kst 1.266129e-04   p_cons 3.516492e-01   p_joint 1.266129e-04

Joint ci ratio: 3.089193e-01	ci left: 1.089358e-04	ci right 1.494403e-04	k: 160	n:1250000
Cons ci ratio: 4.761170e-03	ci left: 3.507773e-01	ci right 3.524522e-01	k: 439518	n:1250000
KS ci ratio: 3.089193e-01	ci left: 1.089358e-04	ci right 1.494403e-04	k: 160	n:1250000
KALRN   1250000 perm   1153 sec   (1085 perm/sec)   p_kst 1.280000e-04   p_cons 3.516144e-01   p_joint 1.280000e-04

Joint ci ratio: 3.070181e-01	ci left: 1.095359e-04	ci right 1.499638e-04	k: 162	n:1260000
Cons ci ratio: 4.742454e-03	ci left: 3.507599e-01	ci right 3.524281e-01	k: 443008	n:1260000
KS ci ratio: 3.070181e-01	ci left: 1.095359e-04	ci right 1.499638e-04	k: 162	n:1260000
KALRN   1260000 perm   1167 sec   (1080 perm/sec)   p_kst 1.285714e-04   p_cons 3.515937e-01   p_joint 1.285714e-04

Joint ci ratio: 3.060807e-01	ci left: 1.094002e-04	ci right 1.496308e-04	k: 163	n:1270000
Cons ci ratio: 4.723583e-03	ci left: 3.507790e-01	ci right 3.524406e-01	k: 446544	n:1270000
KS ci ratio: 3.060807e-01	ci left: 1.094002e-04	ci right 1.496308e-04	k: 163	n:1270000
KALRN   1270000 perm   1181 sec   (1075 perm/sec)   p_kst 1.283465e-04   p_cons 3.516094e-01   p_joint 1.283465e-04

Joint ci ratio: 3.033188e-01	ci left: 1.107102e-04	ci right 1.509841e-04	k: 166	n:1280000
Cons ci ratio: 4.704016e-03	ci left: 3.508868e-01	ci right 3.525420e-01	k: 450194	n:1280000
KS ci ratio: 3.033188e-01	ci left: 1.107102e-04	ci right 1.509841e-04	k: 166	n:1280000
KALRN   1280000 perm   1195 sec   (1071 perm/sec)   p_kst 1.296875e-04   p_cons 3.517141e-01   p_joint 1.296875e-04

Joint ci ratio: 3.006303e-01	ci left: 1.120014e-04	ci right 1.523150e-04	k: 169	n:1290000
Cons ci ratio: 4.686466e-03	ci left: 3.508202e-01	ci right 3.524689e-01	k: 453621	n:1290000
KS ci ratio: 3.006303e-01	ci left: 1.120014e-04	ci right 1.523150e-04	k: 169	n:1290000
KALRN   1290000 perm   1210 sec   (1066 perm/sec)   p_kst 1.310078e-04   p_cons 3.516442e-01   p_joint 1.310078e-04

Joint ci ratio: 2.997501e-01	ci left: 1.118511e-04	ci right 1.519703e-04	k: 170	n:1300000
Cons ci ratio: 4.668796e-03	ci left: 3.507853e-01	ci right 3.524276e-01	k: 457088	n:1300000
KS ci ratio: 2.997501e-01	ci left: 1.118511e-04	ci right 1.519703e-04	k: 170	n:1300000
KALRN   1300000 perm   1225 sec   (1061 perm/sec)   p_kst 1.307692e-04   p_cons 3.516062e-01   p_joint 1.307692e-04

Joint ci ratio: 2.988775e-01	ci left: 1.117033e-04	ci right 1.516307e-04	k: 171	n:1310000
Cons ci ratio: 4.650802e-03	ci left: 3.508022e-01	ci right 3.524382e-01	k: 460622	n:1310000
KS ci ratio: 2.988775e-01	ci left: 1.117033e-04	ci right 1.516307e-04	k: 171	n:1310000
KALRN   1310000 perm   1240 sec   (1056 perm/sec)   p_kst 1.305344e-04   p_cons 3.516198e-01   p_joint 1.305344e-04

Joint ci ratio: 2.971547e-01	ci left: 1.122590e-04	ci right 1.521101e-04	k: 173	n:1320000
Cons ci ratio: 4.633408e-03	ci left: 3.507801e-01	ci right 3.524099e-01	k: 464105	n:1320000
KS ci ratio: 2.971547e-01	ci left: 1.122590e-04	ci right 1.521101e-04	k: 173	n:1320000
KALRN   1320000 perm   1255 sec   (1052 perm/sec)   p_kst 1.310606e-04   p_cons 3.515947e-01   p_joint 1.310606e-04

Joint ci ratio: 2.963045e-01	ci left: 1.121108e-04	ci right 1.517741e-04	k: 174	n:1330000
Cons ci ratio: 4.615902e-03	ci left: 3.507885e-01	ci right 3.524122e-01	k: 467628	n:1330000
KS ci ratio: 2.963045e-01	ci left: 1.121108e-04	ci right 1.517741e-04	k: 174	n:1330000
KALRN   1330000 perm   1270 sec   (1047 perm/sec)   p_kst 1.308271e-04   p_cons 3.516000e-01   p_joint 1.308271e-04

Joint ci ratio: 2.963047e-01	ci left: 1.112742e-04	ci right 1.506415e-04	k: 174	n:1340000
Cons ci ratio: 4.598677e-03	ci left: 3.507885e-01	ci right 3.524061e-01	k: 471140	n:1340000
KS ci ratio: 2.963047e-01	ci left: 1.112742e-04	ci right 1.506415e-04	k: 174	n:1340000
KALRN   1340000 perm   1286 sec   (1042 perm/sec)   p_kst 1.298507e-04   p_cons 3.515970e-01   p_joint 1.298507e-04

Joint ci ratio: 2.937969e-01	ci left: 1.125077e-04	ci right 1.519118e-04	k: 177	n:1350000
Cons ci ratio: 4.581836e-03	ci left: 3.507693e-01	ci right 3.523809e-01	k: 474626	n:1350000
KS ci ratio: 2.937969e-01	ci left: 1.125077e-04	ci right 1.519118e-04	k: 177	n:1350000
KALRN   1350000 perm   1303 sec   (1036 perm/sec)   p_kst 1.311111e-04   p_cons 3.515748e-01   p_joint 1.311111e-04

Joint ci ratio: 2.929752e-01	ci left: 1.123616e-04	ci right 1.515841e-04	k: 178	n:1360000
Cons ci ratio: 4.564737e-03	ci left: 3.507945e-01	ci right 3.524002e-01	k: 478172	n:1360000
KS ci ratio: 2.929752e-01	ci left: 1.123616e-04	ci right 1.515841e-04	k: 178	n:1360000
KALRN   1360000 perm   1319 sec   (1031 perm/sec)   p_kst 1.308824e-04   p_cons 3.515971e-01   p_joint 1.308824e-04

Joint ci ratio: 2.921602e-01	ci left: 1.122178e-04	ci right 1.512610e-04	k: 179	n:1370000
Cons ci ratio: 4.547974e-03	ci left: 3.508048e-01	ci right 3.524046e-01	k: 481698	n:1370000
KS ci ratio: 2.921602e-01	ci left: 1.122178e-04	ci right 1.512610e-04	k: 179	n:1370000
KALRN   1370000 perm   1334 sec   (1027 perm/sec)   p_kst 1.306569e-04   p_cons 3.516044e-01   p_joint 1.306569e-04

Joint ci ratio: 2.913521e-01	ci left: 1.120763e-04	ci right 1.509424e-04	k: 180	n:1380000
Cons ci ratio: 4.531078e-03	ci left: 3.508468e-01	ci right 3.524408e-01	k: 485268	n:1380000
KS ci ratio: 2.913521e-01	ci left: 1.120763e-04	ci right 1.509424e-04	k: 180	n:1380000
KALRN   1380000 perm   1350 sec   (1023 perm/sec)   p_kst 1.304348e-04   p_cons 3.516435e-01   p_joint 1.304348e-04

Joint ci ratio: 2.897556e-01	ci left: 1.126040e-04	ci right 1.513999e-04	k: 182	n:1390000
Cons ci ratio: 4.515052e-03	ci left: 3.508191e-01	ci right 3.524074e-01	k: 488742	n:1390000
KS ci ratio: 2.897556e-01	ci left: 1.126040e-04	ci right 1.513999e-04	k: 182	n:1390000
KALRN   1390000 perm   1365 sec   (1018 perm/sec)   p_kst 1.309353e-04   p_cons 3.516129e-01   p_joint 1.309353e-04

Joint ci ratio: 2.897557e-01	ci left: 1.117997e-04	ci right 1.503185e-04	k: 182	n:1400000
Cons ci ratio: 4.498687e-03	ci left: 3.508433e-01	ci right 3.524259e-01	k: 492288	n:1400000
KS ci ratio: 2.897557e-01	ci left: 1.117997e-04	ci right 1.503185e-04	k: 182	n:1400000
KALRN   1400000 perm   1381 sec   (1014 perm/sec)   p_kst 1.300000e-04   p_cons 3.516343e-01   p_joint 1.300000e-04

Joint ci ratio: 2.881851e-01	ci left: 1.123224e-04	ci right 1.507733e-04	k: 184	n:1410000
Cons ci ratio: 4.482172e-03	ci left: 3.509005e-01	ci right 3.524775e-01	k: 495881	n:1410000
KS ci ratio: 2.881851e-01	ci left: 1.123224e-04	ci right 1.507733e-04	k: 184	n:1410000
KALRN   1410000 perm   1397 sec   (1009 perm/sec)   p_kst 1.304965e-04   p_cons 3.516887e-01   p_joint 1.304965e-04

Joint ci ratio: 2.874094e-01	ci left: 1.121848e-04	ci right 1.504665e-04	k: 185	n:1420000
Cons ci ratio: 4.466809e-03	ci left: 3.508576e-01	ci right 3.524290e-01	k: 499333	n:1420000
KS ci ratio: 2.874094e-01	ci left: 1.121848e-04	ci right 1.504665e-04	k: 185	n:1420000
KALRN   1420000 perm   1412 sec   (1005 perm/sec)   p_kst 1.302817e-04   p_cons 3.516430e-01   p_joint 1.302817e-04

Joint ci ratio: 2.858765e-01	ci left: 1.126984e-04	ci right 1.509131e-04	k: 187	n:1430000
Cons ci ratio: 4.451371e-03	ci left: 3.508390e-01	ci right 3.524049e-01	k: 502819	n:1430000
KS ci ratio: 2.858765e-01	ci left: 1.126984e-04	ci right 1.509131e-04	k: 187	n:1430000
KALRN   1430000 perm   1429 sec   (1001 perm/sec)   p_kst 1.307692e-04   p_cons 3.516217e-01   p_joint 1.307692e-04

Joint ci ratio: 2.821488e-01	ci left: 1.151407e-04	ci right 1.535839e-04	k: 192	n:1440000
Cons ci ratio: 4.436221e-03	ci left: 3.508076e-01	ci right 3.523680e-01	k: 506286	n:1440000
KS ci ratio: 2.821488e-01	ci left: 1.151407e-04	ci right 1.535839e-04	k: 192	n:1440000
KALRN   1440000 perm   1445 sec   (997 perm/sec)   p_kst 1.333333e-04   p_cons 3.515875e-01   p_joint 1.333333e-04

Joint ci ratio: 2.806981e-01	ci left: 1.156286e-04	ci right 1.540011e-04	k: 194	n:1450000
Cons ci ratio: 4.420843e-03	ci left: 3.508159e-01	ci right 3.523709e-01	k: 509810	n:1450000
KS ci ratio: 2.806981e-01	ci left: 1.156286e-04	ci right 1.540011e-04	k: 194	n:1450000
KALRN   1450000 perm   1461 sec   (992 perm/sec)   p_kst 1.337931e-04   p_cons 3.515931e-01   p_joint 1.337931e-04

Joint ci ratio: 2.785633e-01	ci left: 1.167474e-04	ci right 1.551448e-04	k: 197	n:1460000
Cons ci ratio: 4.405590e-03	ci left: 3.508275e-01	ci right 3.523772e-01	k: 513339	n:1460000
KS ci ratio: 2.785633e-01	ci left: 1.167474e-04	ci right 1.551448e-04	k: 197	n:1460000
KALRN   1460000 perm   1478 sec   (988 perm/sec)   p_kst 1.349315e-04   p_cons 3.516021e-01   p_joint 1.349315e-04

Joint ci ratio: 2.771669e-01	ci left: 1.172189e-04	ci right 1.555445e-04	k: 199	n:1470000
Cons ci ratio: 4.390672e-03	ci left: 3.508206e-01	ci right 3.523650e-01	k: 516841	n:1470000
KS ci ratio: 2.771669e-01	ci left: 1.172189e-04	ci right 1.555445e-04	k: 199	n:1470000
KALRN   1470000 perm   1494 sec   (984 perm/sec)   p_kst 1.353741e-04   p_cons 3.515925e-01   p_joint 1.353741e-04

Joint ci ratio: 2.751111e-01	ci left: 1.183136e-04	ci right 1.566605e-04	k: 202	n:1480000
Cons ci ratio: 4.375936e-03	ci left: 3.508105e-01	ci right 3.523496e-01	k: 520338	n:1480000
KS ci ratio: 2.751111e-01	ci left: 1.183136e-04	ci right 1.566605e-04	k: 202	n:1480000
KALRN   1480000 perm   1510 sec   (980 perm/sec)   p_kst 1.364865e-04   p_cons 3.515797e-01   p_joint 1.364865e-04

Joint ci ratio: 2.737657e-01	ci left: 1.187695e-04	ci right 1.570435e-04	k: 204	n:1490000
Cons ci ratio: 4.361515e-03	ci left: 3.507830e-01	ci right 3.523169e-01	k: 523809	n:1490000
KS ci ratio: 2.737657e-01	ci left: 1.187695e-04	ci right 1.570435e-04	k: 204	n:1490000
KALRN   1490000 perm   1527 sec   (976 perm/sec)   p_kst 1.369128e-04   p_cons 3.515497e-01   p_joint 1.369128e-04

Joint ci ratio: 2.717842e-01	ci left: 1.198409e-04	ci right 1.581330e-04	k: 207	n:1500000
Cons ci ratio: 4.347031e-03	ci left: 3.507772e-01	ci right 3.523060e-01	k: 527312	n:1500000
KS ci ratio: 2.717842e-01	ci left: 1.198409e-04	ci right 1.581330e-04	k: 207	n:1500000
KALRN   1500000 perm   1544 sec   (972 perm/sec)   p_kst 1.380000e-04   p_cons 3.515413e-01   p_joint 1.380000e-04

Joint ci ratio: 2.711332e-01	ci left: 1.196644e-04	ci right 1.577930e-04	k: 208	n:1510000
Cons ci ratio: 4.332610e-03	ci left: 3.507801e-01	ci right 3.523039e-01	k: 530828	n:1510000
KS ci ratio: 2.711332e-01	ci left: 1.196644e-04	ci right 1.577930e-04	k: 208	n:1510000
KALRN   1510000 perm   1561 sec   (968 perm/sec)   p_kst 1.377483e-04   p_cons 3.515417e-01   p_joint 1.377483e-04

Joint ci ratio: 2.704869e-01	ci left: 1.194904e-04	ci right 1.574573e-04	k: 209	n:1520000
Cons ci ratio: 4.318455e-03	ci left: 3.507699e-01	ci right 3.522886e-01	k: 534324	n:1520000
KS ci ratio: 2.704869e-01	ci left: 1.194904e-04	ci right 1.574573e-04	k: 209	n:1520000
KALRN   1520000 perm   1577 sec   (964 perm/sec)   p_kst 1.375000e-04   p_cons 3.515289e-01   p_joint 1.375000e-04

Joint ci ratio: 2.692080e-01	ci left: 1.199282e-04	ci right 1.578236e-04	k: 211	n:1530000
Cons ci ratio: 4.304482e-03	ci left: 3.507552e-01	ci right 3.522689e-01	k: 537813	n:1530000
KS ci ratio: 2.692080e-01	ci left: 1.199282e-04	ci right 1.578236e-04	k: 211	n:1530000
KALRN   1530000 perm   1594 sec   (960 perm/sec)   p_kst 1.379085e-04   p_cons 3.515118e-01   p_joint 1.379085e-04

Joint ci ratio: 2.679470e-01	ci left: 1.203607e-04	ci right 1.581847e-04	k: 213	n:1540000
Cons ci ratio: 4.290062e-03	ci left: 3.508024e-01	ci right 3.523112e-01	k: 541397	n:1540000
KS ci ratio: 2.679470e-01	ci left: 1.203607e-04	ci right 1.581847e-04	k: 213	n:1540000
KALRN   1540000 perm   1611 sec   (956 perm/sec)   p_kst 1.383117e-04   p_cons 3.515565e-01   p_joint 1.383117e-04

Joint ci ratio: 2.679471e-01	ci left: 1.195842e-04	ci right 1.571642e-04	k: 213	n:1550000
Cons ci ratio: 4.276247e-03	ci left: 3.507999e-01	ci right 3.523039e-01	k: 544905	n:1550000
KS ci ratio: 2.679471e-01	ci left: 1.195842e-04	ci right 1.571642e-04	k: 213	n:1550000
KALRN   1550000 perm   1627 sec   (952 perm/sec)   p_kst 1.374194e-04   p_cons 3.515516e-01   p_joint 1.374194e-04

Joint ci ratio: 2.660883e-01	ci left: 1.206120e-04	ci right 1.582082e-04	k: 216	n:1560000
Cons ci ratio: 4.262552e-03	ci left: 3.507988e-01	ci right 3.522979e-01	k: 548415	n:1560000
KS ci ratio: 2.660883e-01	ci left: 1.206120e-04	ci right 1.582082e-04	k: 216	n:1560000
KALRN   1560000 perm   1644 sec   (949 perm/sec)   p_kst 1.384615e-04   p_cons 3.515481e-01   p_joint 1.384615e-04

Joint ci ratio: 2.636691e-01	ci left: 1.222224e-04	ci right 1.599170e-04	k: 220	n:1570000
Cons ci ratio: 4.249237e-03	ci left: 3.507710e-01	ci right 3.522653e-01	k: 551883	n:1570000
KS ci ratio: 2.636691e-01	ci left: 1.222224e-04	ci right 1.599170e-04	k: 220	n:1570000
KALRN   1570000 perm   1661 sec   (945 perm/sec)   p_kst 1.401274e-04   p_cons 3.515178e-01   p_joint 1.401274e-04

Joint ci ratio: 2.630746e-01	ci left: 1.220399e-04	ci right 1.595795e-04	k: 221	n:1580000
Cons ci ratio: 4.235729e-03	ci left: 3.507776e-01	ci right 3.522672e-01	k: 555405	n:1580000
KS ci ratio: 2.630746e-01	ci left: 1.220399e-04	ci right 1.595795e-04	k: 221	n:1580000
KALRN   1580000 perm   1679 sec   (941 perm/sec)   p_kst 1.398734e-04   p_cons 3.515222e-01   p_joint 1.398734e-04

Joint ci ratio: 2.630747e-01	ci left: 1.212724e-04	ci right 1.585759e-04	k: 221	n:1590000
Cons ci ratio: 4.222395e-03	ci left: 3.507792e-01	ci right 3.522641e-01	k: 558919	n:1590000
KS ci ratio: 2.630747e-01	ci left: 1.212724e-04	ci right 1.585759e-04	k: 221	n:1590000
KALRN   1590000 perm   1697 sec   (937 perm/sec)   p_kst 1.389937e-04   p_cons 3.515214e-01   p_joint 1.389937e-04

Joint ci ratio: 2.624842e-01	ci left: 1.210983e-04	ci right 1.582509e-04	k: 222	n:1600000
Cons ci ratio: 4.209233e-03	ci left: 3.507758e-01	ci right 3.522560e-01	k: 562425	n:1600000
KS ci ratio: 2.624842e-01	ci left: 1.210983e-04	ci right 1.582509e-04	k: 222	n:1600000
KALRN   1600000 perm   1715 sec   (933 perm/sec)   p_kst 1.387500e-04   p_cons 3.515156e-01   p_joint 1.387500e-04

Joint ci ratio: 2.618977e-01	ci left: 1.209264e-04	ci right 1.579298e-04	k: 223	n:1610000
Cons ci ratio: 4.196416e-03	ci left: 3.507482e-01	ci right 3.522238e-01	k: 565892	n:1610000
KS ci ratio: 2.618977e-01	ci left: 1.209264e-04	ci right 1.579298e-04	k: 223	n:1610000
KALRN   1610000 perm   1734 sec   (928 perm/sec)   p_kst 1.385093e-04   p_cons 3.514857e-01   p_joint 1.385093e-04

Joint ci ratio: 2.613151e-01	ci left: 1.207567e-04	ci right 1.576126e-04	k: 224	n:1620000
Cons ci ratio: 4.183194e-03	ci left: 3.507777e-01	ci right 3.522487e-01	k: 569451	n:1620000
KS ci ratio: 2.613151e-01	ci left: 1.207567e-04	ci right 1.576126e-04	k: 224	n:1620000
KALRN   1620000 perm   1751 sec   (925 perm/sec)   p_kst 1.382716e-04   p_cons 3.515130e-01   p_joint 1.382716e-04

Joint ci ratio: 2.613152e-01	ci left: 1.200159e-04	ci right 1.566456e-04	k: 224	n:1630000
Cons ci ratio: 4.170578e-03	ci left: 3.507541e-01	ci right 3.522206e-01	k: 572924	n:1630000
KS ci ratio: 2.613152e-01	ci left: 1.200159e-04	ci right 1.566456e-04	k: 224	n:1630000
KALRN   1630000 perm   1770 sec   (921 perm/sec)   p_kst 1.374233e-04   p_cons 3.514871e-01   p_joint 1.374233e-04

Joint ci ratio: 2.601615e-01	ci left: 1.204239e-04	ci right 1.569895e-04	k: 226	n:1640000
Cons ci ratio: 4.157376e-03	ci left: 3.508076e-01	ci right 3.522697e-01	k: 576523	n:1640000
KS ci ratio: 2.601615e-01	ci left: 1.204239e-04	ci right 1.569895e-04	k: 226	n:1640000
KALRN   1640000 perm   1787 sec   (918 perm/sec)   p_kst 1.378049e-04   p_cons 3.515384e-01   p_joint 1.378049e-04

Joint ci ratio: 2.595903e-01	ci left: 1.202607e-04	ci right 1.566835e-04	k: 227	n:1650000
Cons ci ratio: 4.144932e-03	ci left: 3.507909e-01	ci right 3.522485e-01	k: 580007	n:1650000
KS ci ratio: 2.595903e-01	ci left: 1.202607e-04	ci right 1.566835e-04	k: 227	n:1650000
KALRN   1650000 perm   1806 sec   (913 perm/sec)   p_kst 1.375758e-04   p_cons 3.515194e-01   p_joint 1.375758e-04

Joint ci ratio: 2.595904e-01	ci left: 1.195362e-04	ci right 1.557397e-04	k: 227	n:1660000
Cons ci ratio: 4.132943e-03	ci left: 3.507363e-01	ci right 3.521895e-01	k: 583428	n:1660000
KS ci ratio: 2.595904e-01	ci left: 1.195362e-04	ci right 1.557397e-04	k: 227	n:1660000
KALRN   1660000 perm   1824 sec   (910 perm/sec)   p_kst 1.367470e-04   p_cons 3.514627e-01   p_joint 1.367470e-04

Joint ci ratio: 2.590231e-01	ci left: 1.193803e-04	ci right 1.554447e-04	k: 228	n:1670000
Cons ci ratio: 4.120997e-03	ci left: 3.506891e-01	ci right 3.521378e-01	k: 586860	n:1670000
KS ci ratio: 2.590231e-01	ci left: 1.193803e-04	ci right 1.554447e-04	k: 228	n:1670000
KALRN   1670000 perm   1842 sec   (907 perm/sec)   p_kst 1.365269e-04   p_cons 3.514132e-01   p_joint 1.365269e-04

Joint ci ratio: 2.590232e-01	ci left: 1.186697e-04	ci right 1.545195e-04	k: 228	n:1680000
Cons ci ratio: 4.108591e-03	ci left: 3.507048e-01	ci right 3.521493e-01	k: 590397	n:1680000
KS ci ratio: 2.590232e-01	ci left: 1.186697e-04	ci right 1.545195e-04	k: 228	n:1680000
KALRN   1680000 perm   1860 sec   (903 perm/sec)   p_kst 1.357143e-04   p_cons 3.514268e-01   p_joint 1.357143e-04

Joint ci ratio: 2.590233e-01	ci left: 1.179675e-04	ci right 1.536052e-04	k: 228	n:1690000
Cons ci ratio: 4.096664e-03	ci left: 3.506796e-01	ci right 3.521197e-01	k: 593865	n:1690000
KS ci ratio: 2.590233e-01	ci left: 1.179675e-04	ci right 1.536052e-04	k: 228	n:1690000
KALRN   1690000 perm   1878 sec   (900 perm/sec)   p_kst 1.349112e-04   p_cons 3.513994e-01   p_joint 1.349112e-04

Joint ci ratio: 2.578995e-01	ci left: 1.183738e-04	ci right 1.539541e-04	k: 230	n:1700000
Cons ci ratio: 4.084803e-03	ci left: 3.506588e-01	ci right 3.520947e-01	k: 597340	n:1700000
KS ci ratio: 2.578995e-01	ci left: 1.183738e-04	ci right 1.539541e-04	k: 230	n:1700000
KALRN   1700000 perm   1896 sec   (897 perm/sec)   p_kst 1.352941e-04   p_cons 3.513765e-01   p_joint 1.352941e-04

Joint ci ratio: 2.573431e-01	ci left: 1.182286e-04	ci right 1.536763e-04	k: 231	n:1710000
Cons ci ratio: 4.072589e-03	ci left: 3.506891e-01	ci right 3.521208e-01	k: 600902	n:1710000
KS ci ratio: 2.573431e-01	ci left: 1.182286e-04	ci right 1.536763e-04	k: 231	n:1710000
KALRN   1710000 perm   1915 sec   (893 perm/sec)   p_kst 1.350877e-04   p_cons 3.514047e-01   p_joint 1.350877e-04

Joint ci ratio: 2.562409e-01	ci left: 1.186292e-04	ci right 1.540203e-04	k: 233	n:1720000
Cons ci ratio: 4.060604e-03	ci left: 3.507057e-01	ci right 3.521332e-01	k: 604441	n:1720000
KS ci ratio: 2.562409e-01	ci left: 1.186292e-04	ci right 1.540203e-04	k: 233	n:1720000
KALRN   1720000 perm   1933 sec   (890 perm/sec)   p_kst 1.354651e-04   p_cons 3.514192e-01   p_joint 1.354651e-04

Joint ci ratio: 2.562410e-01	ci left: 1.179435e-04	ci right 1.531300e-04	k: 233	n:1730000
Cons ci ratio: 4.048518e-03	ci left: 3.507452e-01	ci right 3.521686e-01	k: 608020	n:1730000
KS ci ratio: 2.562410e-01	ci left: 1.179435e-04	ci right 1.531300e-04	k: 233	n:1730000
KALRN   1730000 perm   1951 sec   (887 perm/sec)   p_kst 1.346821e-04   p_cons 3.514566e-01   p_joint 1.346821e-04

Joint ci ratio: 2.551529e-01	ci left: 1.183414e-04	ci right 1.534728e-04	k: 235	n:1740000
Cons ci ratio: 4.036978e-03	ci left: 3.507348e-01	ci right 3.521542e-01	k: 611513	n:1740000
KS ci ratio: 2.551529e-01	ci left: 1.183414e-04	ci right 1.534728e-04	k: 235	n:1740000
KALRN   1740000 perm   1970 sec   (883 perm/sec)   p_kst 1.350575e-04   p_cons 3.514443e-01   p_joint 1.350575e-04

Joint ci ratio: 2.540785e-01	ci left: 1.187351e-04	ci right 1.538115e-04	k: 237	n:1750000
Cons ci ratio: 4.025575e-03	ci left: 3.507201e-01	ci right 3.521353e-01	k: 614998	n:1750000
KS ci ratio: 2.540785e-01	ci left: 1.187351e-04	ci right 1.538115e-04	k: 237	n:1750000
KALRN   1750000 perm   1988 sec   (880 perm/sec)   p_kst 1.354286e-04   p_cons 3.514274e-01   p_joint 1.354286e-04

Joint ci ratio: 2.530176e-01	ci left: 1.191246e-04	ci right 1.541460e-04	k: 239	n:1760000
Cons ci ratio: 4.014389e-03	ci left: 3.506918e-01	ci right 3.521030e-01	k: 618459	n:1760000
KS ci ratio: 2.530176e-01	ci left: 1.191246e-04	ci right 1.541460e-04	k: 239	n:1760000
KALRN   1760000 perm   2008 sec   (877 perm/sec)   p_kst 1.357955e-04   p_cons 3.513972e-01   p_joint 1.357955e-04

Joint ci ratio: 2.530177e-01	ci left: 1.184516e-04	ci right 1.532751e-04	k: 239	n:1770000
Cons ci ratio: 4.003222e-03	ci left: 3.506724e-01	ci right 3.520795e-01	k: 621935	n:1770000
KS ci ratio: 2.530177e-01	ci left: 1.184516e-04	ci right 1.532751e-04	k: 239	n:1770000
KALRN   1770000 perm   2027 sec   (873 perm/sec)   p_kst 1.350282e-04   p_cons 3.513757e-01   p_joint 1.350282e-04

Joint ci ratio: 2.530178e-01	ci left: 1.177861e-04	ci right 1.524140e-04	k: 239	n:1780000
Cons ci ratio: 3.992152e-03	ci left: 3.506526e-01	ci right 3.520558e-01	k: 625410	n:1780000
KS ci ratio: 2.530178e-01	ci left: 1.177861e-04	ci right 1.524140e-04	k: 239	n:1780000
KALRN   1780000 perm   2046 sec   (870 perm/sec)   p_kst 1.342697e-04   p_cons 3.513539e-01   p_joint 1.342697e-04

Joint ci ratio: 2.519700e-01	ci left: 1.181747e-04	ci right 1.527504e-04	k: 241	n:1790000
Cons ci ratio: 3.981256e-03	ci left: 3.506235e-01	ci right 3.520228e-01	k: 628868	n:1790000
KS ci ratio: 2.519700e-01	ci left: 1.181747e-04	ci right 1.527504e-04	k: 241	n:1790000
KALRN   1790000 perm   2065 sec   (867 perm/sec)   p_kst 1.346369e-04   p_cons 3.513229e-01   p_joint 1.346369e-04

Joint ci ratio: 2.519701e-01	ci left: 1.175182e-04	ci right 1.519018e-04	k: 241	n:1800000
Cons ci ratio: 3.969805e-03	ci left: 3.506687e-01	ci right 3.520640e-01	k: 632459	n:1800000
KS ci ratio: 2.519701e-01	ci left: 1.175182e-04	ci right 1.519018e-04	k: 241	n:1800000
KALRN   1800000 perm   2085 sec   (863 perm/sec)   p_kst 1.338889e-04   p_cons 3.513661e-01   p_joint 1.338889e-04

Joint ci ratio: 2.504226e-01	ci left: 1.184221e-04	ci right 1.528241e-04	k: 244	n:1810000
Cons ci ratio: 3.958841e-03	ci left: 3.506686e-01	ci right 3.520601e-01	k: 635969	n:1810000
KS ci ratio: 2.504226e-01	ci left: 1.184221e-04	ci right 1.528241e-04	k: 244	n:1810000
KALRN   1810000 perm   2104 sec   (860 perm/sec)   p_kst 1.348066e-04   p_cons 3.513641e-01   p_joint 1.348066e-04

Joint ci ratio: 2.494066e-01	ci left: 1.188015e-04	ci right 1.531520e-04	k: 246	n:1820000
Cons ci ratio: 3.947915e-03	ci left: 3.506745e-01	ci right 3.520622e-01	k: 639490	n:1820000
KS ci ratio: 2.494066e-01	ci left: 1.188015e-04	ci right 1.531520e-04	k: 246	n:1820000
KALRN   1820000 perm   2123 sec   (857 perm/sec)   p_kst 1.351648e-04   p_cons 3.513681e-01   p_joint 1.351648e-04

Joint ci ratio: 2.479056e-01	ci left: 1.196895e-04	ci right 1.540564e-04	k: 249	n:1830000
Cons ci ratio: 3.937254e-03	ci left: 3.506602e-01	ci right 3.520441e-01	k: 642974	n:1830000
KS ci ratio: 2.479056e-01	ci left: 1.196895e-04	ci right 1.540564e-04	k: 249	n:1830000
KALRN   1830000 perm   2142 sec   (854 perm/sec)   p_kst 1.360656e-04   p_cons 3.513519e-01   p_joint 1.360656e-04

Joint ci ratio: 2.479057e-01	ci left: 1.190390e-04	ci right 1.532192e-04	k: 249	n:1840000
Cons ci ratio: 3.926636e-03	ci left: 3.506509e-01	ci right 3.520310e-01	k: 646467	n:1840000
KS ci ratio: 2.479057e-01	ci left: 1.190390e-04	ci right 1.532192e-04	k: 249	n:1840000
KALRN   1840000 perm   2161 sec   (851 perm/sec)   p_kst 1.353261e-04   p_cons 3.513408e-01   p_joint 1.353261e-04

Joint ci ratio: 2.469199e-01	ci left: 1.194096e-04	ci right 1.535389e-04	k: 251	n:1850000
Cons ci ratio: 3.916011e-03	ci left: 3.506526e-01	ci right 3.520290e-01	k: 649980	n:1850000
KS ci ratio: 2.469199e-01	ci left: 1.194096e-04	ci right 1.535389e-04	k: 251	n:1850000
KALRN   1850000 perm   2180 sec   (849 perm/sec)   p_kst 1.356757e-04   p_cons 3.513405e-01   p_joint 1.356757e-04

Joint ci ratio: 2.459458e-01	ci left: 1.197765e-04	ci right 1.538550e-04	k: 253	n:1860000
Cons ci ratio: 3.905191e-03	ci left: 3.506870e-01	ci right 3.520597e-01	k: 653554	n:1860000
KS ci ratio: 2.459458e-01	ci left: 1.197765e-04	ci right 1.538550e-04	k: 253	n:1860000
KALRN   1860000 perm   2199 sec   (846 perm/sec)   p_kst 1.360215e-04   p_cons 3.513731e-01   p_joint 1.360215e-04

Joint ci ratio: 2.454631e-01	ci left: 1.196378e-04	ci right 1.535998e-04	k: 254	n:1870000
Cons ci ratio: 3.894579e-03	ci left: 3.507072e-01	ci right 3.520762e-01	k: 657102	n:1870000
KS ci ratio: 2.454631e-01	ci left: 1.196378e-04	ci right 1.535998e-04	k: 254	n:1870000
KALRN   1870000 perm   2219 sec   (843 perm/sec)   p_kst 1.358289e-04   p_cons 3.513914e-01   p_joint 1.358289e-04

Joint ci ratio: 2.440317e-01	ci left: 1.204993e-04	ci right 1.544762e-04	k: 257	n:1880000
Cons ci ratio: 3.884352e-03	ci left: 3.506920e-01	ci right 3.520574e-01	k: 660584	n:1880000
KS ci ratio: 2.440317e-01	ci left: 1.204993e-04	ci right 1.544762e-04	k: 257	n:1880000
KALRN   1880000 perm   2238 sec   (840 perm/sec)   p_kst 1.367021e-04   p_cons 3.513745e-01   p_joint 1.367021e-04

Joint ci ratio: 2.435602e-01	ci left: 1.203586e-04	ci right 1.542202e-04	k: 258	n:1890000
Cons ci ratio: 3.874057e-03	ci left: 3.506945e-01	ci right 3.520562e-01	k: 664099	n:1890000
KS ci ratio: 2.435602e-01	ci left: 1.203586e-04	ci right 1.542202e-04	k: 258	n:1890000
KALRN   1890000 perm   2258 sec   (837 perm/sec)   p_kst 1.365079e-04   p_cons 3.513751e-01   p_joint 1.365079e-04

Joint ci ratio: 2.421616e-01	ci left: 1.212080e-04	ci right 1.550834e-04	k: 261	n:1900000
Cons ci ratio: 3.863615e-03	ci left: 3.507238e-01	ci right 3.520820e-01	k: 667665	n:1900000
KS ci ratio: 2.421616e-01	ci left: 1.212080e-04	ci right 1.550834e-04	k: 261	n:1900000
KALRN   1900000 perm   2278 sec   (834 perm/sec)   p_kst 1.373684e-04   p_cons 3.514026e-01   p_joint 1.373684e-04

Joint ci ratio: 2.412426e-01	ci left: 1.215571e-04	ci right 1.553819e-04	k: 263	n:1910000
Cons ci ratio: 3.853572e-03	ci left: 3.507156e-01	ci right 3.520702e-01	k: 671160	n:1910000
KS ci ratio: 2.412426e-01	ci left: 1.215571e-04	ci right 1.553819e-04	k: 263	n:1910000
KALRN   1910000 perm   2298 sec   (831 perm/sec)   p_kst 1.376963e-04   p_cons 3.513927e-01   p_joint 1.376963e-04

Joint ci ratio: 2.412427e-01	ci left: 1.209240e-04	ci right 1.545726e-04	k: 263	n:1920000
Cons ci ratio: 3.843738e-03	ci left: 3.506919e-01	ci right 3.520429e-01	k: 674625	n:1920000
KS ci ratio: 2.412427e-01	ci left: 1.209240e-04	ci right 1.545726e-04	k: 263	n:1920000
KALRN   1920000 perm   2318 sec   (828 perm/sec)   p_kst 1.369792e-04   p_cons 3.513672e-01   p_joint 1.369792e-04

Joint ci ratio: 2.394354e-01	ci left: 1.222452e-04	ci right 1.559688e-04	k: 267	n:1930000
Cons ci ratio: 3.834063e-03	ci left: 3.506586e-01	ci right 3.520061e-01	k: 678071	n:1930000
KS ci ratio: 2.394354e-01	ci left: 1.222452e-04	ci right 1.559688e-04	k: 267	n:1930000
KALRN   1930000 perm   2339 sec   (825 perm/sec)   p_kst 1.383420e-04   p_cons 3.513321e-01   p_joint 1.383420e-04

Joint ci ratio: 2.389900e-01	ci left: 1.220996e-04	ci right 1.557111e-04	k: 268	n:1940000
Cons ci ratio: 3.823984e-03	ci left: 3.506823e-01	ci right 3.520264e-01	k: 681627	n:1940000
KS ci ratio: 2.389900e-01	ci left: 1.220996e-04	ci right 1.557111e-04	k: 268	n:1940000
KALRN   1940000 perm   2359 sec   (822 perm/sec)   p_kst 1.381443e-04   p_cons 3.513541e-01   p_joint 1.381443e-04

Joint ci ratio: 2.372325e-01	ci left: 1.234024e-04	ci right 1.570860e-04	k: 272	n:1950000
Cons ci ratio: 3.813962e-03	ci left: 3.507084e-01	ci right 3.520490e-01	k: 685188	n:1950000
KS ci ratio: 2.372325e-01	ci left: 1.234024e-04	ci right 1.570860e-04	k: 272	n:1950000
KALRN   1950000 perm   2380 sec   (819 perm/sec)   p_kst 1.394872e-04   p_cons 3.513785e-01   p_joint 1.394872e-04

Joint ci ratio: 2.372326e-01	ci left: 1.227728e-04	ci right 1.562846e-04	k: 272	n:1960000
Cons ci ratio: 3.804228e-03	ci left: 3.507092e-01	ci right 3.520464e-01	k: 688700	n:1960000
KS ci ratio: 2.372326e-01	ci left: 1.227728e-04	ci right 1.562846e-04	k: 272	n:1960000
KALRN   1960000 perm   2400 sec   (817 perm/sec)   p_kst 1.387755e-04   p_cons 3.513776e-01   p_joint 1.387755e-04

Joint ci ratio: 2.359397e-01	ci left: 1.235821e-04	ci right 1.571042e-04	k: 275	n:1970000
Cons ci ratio: 3.794466e-03	ci left: 3.507221e-01	ci right 3.520560e-01	k: 692236	n:1970000
KS ci ratio: 2.359397e-01	ci left: 1.235821e-04	ci right 1.571042e-04	k: 275	n:1970000
KALRN   1970000 perm   2421 sec   (814 perm/sec)   p_kst 1.395939e-04   p_cons 3.513888e-01   p_joint 1.395939e-04

Joint ci ratio: 2.355134e-01	ci left: 1.234332e-04	ci right 1.568455e-04	k: 276	n:1980000
Cons ci ratio: 3.784675e-03	ci left: 3.507476e-01	ci right 3.520781e-01	k: 695797	n:1980000
KS ci ratio: 2.355134e-01	ci left: 1.234332e-04	ci right 1.568455e-04	k: 276	n:1980000
KALRN   1980000 perm   2441 sec   (811 perm/sec)   p_kst 1.393939e-04   p_cons 3.514126e-01   p_joint 1.393939e-04

Joint ci ratio: 2.338310e-01	ci left: 1.247048e-04	ci right 1.581854e-04	k: 280	n:1990000
Cons ci ratio: 3.775187e-03	ci left: 3.507452e-01	ci right 3.520723e-01	k: 699303	n:1990000
KS ci ratio: 2.338310e-01	ci left: 1.247048e-04	ci right 1.581854e-04	k: 280	n:1990000
KALRN   1990000 perm   2462 sec   (808 perm/sec)   p_kst 1.407035e-04   p_cons 3.514085e-01   p_joint 1.407035e-04

Joint ci ratio: 2.334161e-01	ci left: 1.245521e-04	ci right 1.579237e-04	k: 281	n:2000000
Cons ci ratio: 3.765713e-03	ci left: 3.507498e-01	ci right 3.520736e-01	k: 702823	n:2000000
KS ci ratio: 2.334161e-01	ci left: 1.245521e-04	ci right 1.579237e-04	k: 281	n:2000000
KALRN   2000000 perm   2484 sec   (805 perm/sec)   p_kst 1.405000e-04   p_cons 3.514115e-01   p_joint 1.405000e-04

Joint ci ratio: 2.334162e-01	ci left: 1.239324e-04	ci right 1.571380e-04	k: 281	n:2010000
Cons ci ratio: 3.756199e-03	ci left: 3.507678e-01	ci right 3.520883e-01	k: 706370	n:2010000
KS ci ratio: 2.334162e-01	ci left: 1.239324e-04	ci right 1.571380e-04	k: 281	n:2010000
KALRN   2010000 perm   2505 sec   (802 perm/sec)   p_kst 1.398010e-04   p_cons 3.514279e-01   p_joint 1.398010e-04

Joint ci ratio: 2.325928e-01	ci left: 1.242512e-04	ci right 1.574079e-04	k: 283	n:2020000
Cons ci ratio: 3.746676e-03	ci left: 3.507955e-01	ci right 3.521128e-01	k: 709937	n:2020000
KS ci ratio: 2.325928e-01	ci left: 1.242512e-04	ci right 1.574079e-04	k: 283	n:2020000
KALRN   2020000 perm   2526 sec   (800 perm/sec)   p_kst 1.400990e-04   p_cons 3.514540e-01   p_joint 1.400990e-04

Joint ci ratio: 2.317781e-01	ci left: 1.245670e-04	ci right 1.576749e-04	k: 285	n:2030000
Cons ci ratio: 3.737438e-03	ci left: 3.507969e-01	ci right 3.521109e-01	k: 713451	n:2030000
KS ci ratio: 2.317781e-01	ci left: 1.245670e-04	ci right 1.576749e-04	k: 285	n:2030000
KALRN   2030000 perm   2547 sec   (797 perm/sec)   p_kst 1.403941e-04   p_cons 3.514537e-01   p_joint 1.403941e-04

Joint ci ratio: 2.317782e-01	ci left: 1.239564e-04	ci right 1.569020e-04	k: 285	n:2040000
Cons ci ratio: 3.728181e-03	ci left: 3.508090e-01	ci right 3.521198e-01	k: 716987	n:2040000
KS ci ratio: 2.317782e-01	ci left: 1.239564e-04	ci right 1.569020e-04	k: 285	n:2040000
KALRN   2040000 perm   2568 sec   (794 perm/sec)   p_kst 1.397059e-04   p_cons 3.514642e-01   p_joint 1.397059e-04

Joint ci ratio: 2.313740e-01	ci left: 1.238112e-04	ci right 1.566526e-04	k: 286	n:2050000
Cons ci ratio: 3.718769e-03	ci left: 3.508484e-01	ci right 3.521560e-01	k: 720579	n:2050000
KS ci ratio: 2.313740e-01	ci left: 1.238112e-04	ci right 1.566526e-04	k: 286	n:2050000
KALRN   2050000 perm   2589 sec   (792 perm/sec)   p_kst 1.395122e-04   p_cons 3.515020e-01   p_joint 1.395122e-04

Joint ci ratio: 2.313741e-01	ci left: 1.232102e-04	ci right 1.558922e-04	k: 286	n:2060000
Cons ci ratio: 3.709775e-03	ci left: 3.508446e-01	ci right 3.521490e-01	k: 724083	n:2060000
KS ci ratio: 2.313741e-01	ci left: 1.232102e-04	ci right 1.558922e-04	k: 286	n:2060000
KALRN   2060000 perm   2611 sec   (789 perm/sec)   p_kst 1.388350e-04   p_cons 3.514966e-01   p_joint 1.388350e-04

Joint ci ratio: 2.305721e-01	ci left: 1.235253e-04	ci right 1.561611e-04	k: 288	n:2070000
Cons ci ratio: 3.700862e-03	ci left: 3.508389e-01	ci right 3.521402e-01	k: 727583	n:2070000
KS ci ratio: 2.305721e-01	ci left: 1.235253e-04	ci right 1.561611e-04	k: 288	n:2070000
KALRN   2070000 perm   2632 sec   (786 perm/sec)   p_kst 1.391304e-04   p_cons 3.514894e-01   p_joint 1.391304e-04

Joint ci ratio: 2.305722e-01	ci left: 1.229314e-04	ci right 1.554103e-04	k: 288	n:2080000
Cons ci ratio: 3.692130e-03	ci left: 3.508189e-01	ci right 3.521171e-01	k: 731053	n:2080000
KS ci ratio: 2.305722e-01	ci left: 1.229314e-04	ci right 1.554103e-04	k: 288	n:2080000
KALRN   2080000 perm   2655 sec   (784 perm/sec)   p_kst 1.384615e-04   p_cons 3.514678e-01   p_joint 1.384615e-04

Joint ci ratio: 2.305722e-01	ci left: 1.223432e-04	ci right 1.546667e-04	k: 288	n:2090000
Cons ci ratio: 3.683498e-03	ci left: 3.507943e-01	ci right 3.520893e-01	k: 734513	n:2090000
KS ci ratio: 2.305722e-01	ci left: 1.223432e-04	ci right 1.546667e-04	k: 288	n:2090000
KALRN   2090000 perm   2676 sec   (781 perm/sec)   p_kst 1.377990e-04   p_cons 3.514416e-01   p_joint 1.377990e-04

Joint ci ratio: 2.301744e-01	ci left: 1.222093e-04	ci right 1.544338e-04	k: 289	n:2100000
Cons ci ratio: 3.674699e-03	ci left: 3.507981e-01	ci right 3.520900e-01	k: 738032	n:2100000
KS ci ratio: 2.301744e-01	ci left: 1.222093e-04	ci right 1.544338e-04	k: 289	n:2100000
KALRN   2100000 perm   2697 sec   (779 perm/sec)   p_kst 1.376190e-04   p_cons 3.514438e-01   p_joint 1.376190e-04

Joint ci ratio: 2.293847e-01	ci left: 1.225234e-04	ci right 1.547043e-04	k: 291	n:2110000
Cons ci ratio: 3.666078e-03	ci left: 3.507875e-01	ci right 3.520764e-01	k: 741521	n:2110000
KS ci ratio: 2.293847e-01	ci left: 1.225234e-04	ci right 1.547043e-04	k: 291	n:2110000
KALRN   2110000 perm   2719 sec   (776 perm/sec)   p_kst 1.379147e-04   p_cons 3.514318e-01   p_joint 1.379147e-04

Joint ci ratio: 2.282153e-01	ci left: 1.232795e-04	ci right 1.554706e-04	k: 294	n:2120000
Cons ci ratio: 3.657188e-03	ci left: 3.508181e-01	ci right 3.521040e-01	k: 745097	n:2120000
KS ci ratio: 2.282153e-01	ci left: 1.232795e-04	ci right 1.554706e-04	k: 294	n:2120000
KALRN   2120000 perm   2741 sec   (773 perm/sec)   p_kst 1.386792e-04   p_cons 3.514608e-01   p_joint 1.386792e-04

Joint ci ratio: 2.274456e-01	ci left: 1.235861e-04	ci right 1.557331e-04	k: 296	n:2130000
Cons ci ratio: 3.648652e-03	ci left: 3.508123e-01	ci right 3.520951e-01	k: 748596	n:2130000
KS ci ratio: 2.274456e-01	ci left: 1.235861e-04	ci right 1.557331e-04	k: 296	n:2130000
KALRN   2130000 perm   2763 sec   (771 perm/sec)   p_kst 1.389671e-04   p_cons 3.514535e-01   p_joint 1.389671e-04

Joint ci ratio: 2.263054e-01	ci left: 1.243308e-04	ci right 1.564868e-04	k: 299	n:2140000
Cons ci ratio: 3.640015e-03	ci left: 3.508267e-01	ci right 3.521064e-01	k: 752138	n:2140000
KS ci ratio: 2.263054e-01	ci left: 1.243308e-04	ci right 1.564868e-04	k: 299	n:2140000
KALRN   2140000 perm   2785 sec   (768 perm/sec)   p_kst 1.397196e-04   p_cons 3.514664e-01   p_joint 1.397196e-04

Joint ci ratio: 2.255548e-01	ci left: 1.246301e-04	ci right 1.567417e-04	k: 301	n:2150000
Cons ci ratio: 3.631805e-03	ci left: 3.507948e-01	ci right 3.520716e-01	k: 755581	n:2150000
KS ci ratio: 2.255548e-01	ci left: 1.246301e-04	ci right 1.567417e-04	k: 301	n:2150000
KALRN   2150000 perm   2808 sec   (766 perm/sec)   p_kst 1.400000e-04   p_cons 3.514330e-01   p_joint 1.400000e-04

Joint ci ratio: 2.251823e-01	ci left: 1.244899e-04	ci right 1.565051e-04	k: 302	n:2160000
Cons ci ratio: 3.623415e-03	ci left: 3.507929e-01	ci right 3.520667e-01	k: 759088	n:2160000
KS ci ratio: 2.251823e-01	ci left: 1.244899e-04	ci right 1.565051e-04	k: 302	n:2160000
KALRN   2160000 perm   2830 sec   (763 perm/sec)   p_kst 1.398148e-04   p_cons 3.514296e-01   p_joint 1.398148e-04

Joint ci ratio: 2.251823e-01	ci left: 1.239162e-04	ci right 1.557839e-04	k: 302	n:2170000
Cons ci ratio: 3.614853e-03	ci left: 3.508200e-01	ci right 3.520909e-01	k: 762658	n:2170000
KS ci ratio: 2.251823e-01	ci left: 1.239162e-04	ci right 1.557839e-04	k: 302	n:2170000
KALRN   2170000 perm   2853 sec   (761 perm/sec)   p_kst 1.391705e-04   p_cons 3.514553e-01   p_joint 1.391705e-04

Joint ci ratio: 2.248117e-01	ci left: 1.237807e-04	ci right 1.555539e-04	k: 303	n:2180000
Cons ci ratio: 3.606442e-03	ci left: 3.508355e-01	ci right 3.521035e-01	k: 766203	n:2180000
KS ci ratio: 2.248117e-01	ci left: 1.237807e-04	ci right 1.555539e-04	k: 303	n:2180000
KALRN   2180000 perm   2875 sec   (758 perm/sec)   p_kst 1.389908e-04   p_cons 3.514693e-01   p_joint 1.389908e-04

Joint ci ratio: 2.240758e-01	ci left: 1.240774e-04	ci right 1.558081e-04	k: 305	n:2190000
Cons ci ratio: 3.597784e-03	ci left: 3.508895e-01	ci right 3.521547e-01	k: 769833	n:2190000
KS ci ratio: 2.240758e-01	ci left: 1.240774e-04	ci right 1.558081e-04	k: 305	n:2190000
KALRN   2190000 perm   2897 sec   (756 perm/sec)   p_kst 1.392694e-04   p_cons 3.515219e-01   p_joint 1.392694e-04

Joint ci ratio: 2.237106e-01	ci left: 1.239425e-04	ci right 1.555798e-04	k: 306	n:2200000
Cons ci ratio: 3.589681e-03	ci left: 3.508804e-01	ci right 3.521427e-01	k: 773325	n:2200000
KS ci ratio: 2.237106e-01	ci left: 1.239425e-04	ci right 1.555798e-04	k: 306	n:2200000
KALRN   2200000 perm   2920 sec   (753 perm/sec)   p_kst 1.390909e-04   p_cons 3.515114e-01   p_joint 1.390909e-04

Joint ci ratio: 2.233471e-01	ci left: 1.238088e-04	ci right 1.553536e-04	k: 307	n:2210000
Cons ci ratio: 3.581387e-03	ci left: 3.509026e-01	ci right 3.521620e-01	k: 776886	n:2210000
KS ci ratio: 2.233471e-01	ci left: 1.238088e-04	ci right 1.553536e-04	k: 307	n:2210000
KALRN   2210000 perm   2943 sec   (751 perm/sec)   p_kst 1.389140e-04   p_cons 3.515321e-01   p_joint 1.389140e-04

Joint ci ratio: 2.229854e-01	ci left: 1.236764e-04	ci right 1.551294e-04	k: 308	n:2220000
Cons ci ratio: 3.573316e-03	ci left: 3.509034e-01	ci right 3.521600e-01	k: 780400	n:2220000
KS ci ratio: 2.229854e-01	ci left: 1.236764e-04	ci right 1.551294e-04	k: 308	n:2220000
KALRN   2220000 perm   2965 sec   (749 perm/sec)   p_kst 1.387387e-04   p_cons 3.515315e-01   p_joint 1.387387e-04

Joint ci ratio: 2.229855e-01	ci left: 1.231217e-04	ci right 1.544338e-04	k: 308	n:2230000
Cons ci ratio: 3.565419e-03	ci left: 3.508890e-01	ci right 3.521428e-01	k: 783880	n:2230000
KS ci ratio: 2.229855e-01	ci left: 1.231217e-04	ci right 1.544338e-04	k: 308	n:2230000
KALRN   2230000 perm   2990 sec   (746 perm/sec)   p_kst 1.381166e-04   p_cons 3.515157e-01   p_joint 1.381166e-04

Joint ci ratio: 2.219108e-01	ci left: 1.238368e-04	ci right 1.551581e-04	k: 311	n:2240000
Cons ci ratio: 3.557264e-03	ci left: 3.509145e-01	ci right 3.521654e-01	k: 787449	n:2240000
KS ci ratio: 2.219108e-01	ci left: 1.238368e-04	ci right 1.551581e-04	k: 311	n:2240000
KALRN   2240000 perm   3012 sec   (744 perm/sec)   p_kst 1.388393e-04   p_cons 3.515397e-01   p_joint 1.388393e-04

Joint ci ratio: 2.208515e-01	ci left: 1.245458e-04	ci right 1.558757e-04	k: 314	n:2250000
Cons ci ratio: 3.549269e-03	ci left: 3.509263e-01	ci right 3.521745e-01	k: 790988	n:2250000
KS ci ratio: 2.208515e-01	ci left: 1.245458e-04	ci right 1.558757e-04	k: 314	n:2250000
KALRN   2250000 perm   3035 sec   (741 perm/sec)   p_kst 1.395556e-04   p_cons 3.515502e-01   p_joint 1.395556e-04

Joint ci ratio: 2.205018e-01	ci left: 1.244127e-04	ci right 1.556529e-04	k: 315	n:2260000
Cons ci ratio: 3.541540e-03	ci left: 3.509107e-01	ci right 3.521561e-01	k: 794465	n:2260000
KS ci ratio: 2.205018e-01	ci left: 1.244127e-04	ci right 1.556529e-04	k: 315	n:2260000
KALRN   2260000 perm   3058 sec   (739 perm/sec)   p_kst 1.393805e-04   p_cons 3.515332e-01   p_joint 1.393805e-04

Joint ci ratio: 2.201537e-01	ci left: 1.242809e-04	ci right 1.554320e-04	k: 316	n:2270000
Cons ci ratio: 3.533636e-03	ci left: 3.509242e-01	ci right 3.521669e-01	k: 798008	n:2270000
KS ci ratio: 2.201537e-01	ci left: 1.242809e-04	ci right 1.554320e-04	k: 316	n:2270000
KALRN   2270000 perm   3082 sec   (737 perm/sec)   p_kst 1.392070e-04   p_cons 3.515454e-01   p_joint 1.392070e-04

Joint ci ratio: 2.198073e-01	ci left: 1.241502e-04	ci right 1.552130e-04	k: 317	n:2280000
Cons ci ratio: 3.525853e-03	ci left: 3.509289e-01	ci right 3.521688e-01	k: 801531	n:2280000
KS ci ratio: 2.198073e-01	ci left: 1.241502e-04	ci right 1.552130e-04	k: 317	n:2280000
KALRN   2280000 perm   3105 sec   (734 perm/sec)   p_kst 1.390351e-04   p_cons 3.515487e-01   p_joint 1.390351e-04

Joint ci ratio: 2.191193e-01	ci left: 1.244334e-04	ci right 1.554565e-04	k: 319	n:2290000
Cons ci ratio: 3.518121e-03	ci left: 3.509335e-01	ci right 3.521708e-01	k: 805054	n:2290000
KS ci ratio: 2.191193e-01	ci left: 1.244334e-04	ci right 1.554565e-04	k: 319	n:2290000
KALRN   2290000 perm   3128 sec   (732 perm/sec)   p_kst 1.393013e-04   p_cons 3.515520e-01   p_joint 1.393013e-04

Joint ci ratio: 2.187777e-01	ci left: 1.243033e-04	ci right 1.552392e-04	k: 320	n:2300000
Cons ci ratio: 3.510346e-03	ci left: 3.509503e-01	ci right 3.521848e-01	k: 808605	n:2300000
KS ci ratio: 2.187777e-01	ci left: 1.243033e-04	ci right 1.552392e-04	k: 320	n:2300000
KALRN   2300000 perm   3151 sec   (730 perm/sec)   p_kst 1.391304e-04   p_cons 3.515674e-01   p_joint 1.391304e-04

Joint ci ratio: 2.184378e-01	ci left: 1.241744e-04	ci right 1.550237e-04	k: 321	n:2310000
Cons ci ratio: 3.502372e-03	ci left: 3.509994e-01	ci right 3.522313e-01	k: 812231	n:2310000
KS ci ratio: 2.184378e-01	ci left: 1.241744e-04	ci right 1.550237e-04	k: 321	n:2310000
KALRN   2310000 perm   3175 sec   (728 perm/sec)   p_kst 1.389610e-04   p_cons 3.516152e-01   p_joint 1.389610e-04

Joint ci ratio: 2.180994e-01	ci left: 1.240467e-04	ci right 1.548101e-04	k: 322	n:2320000
Cons ci ratio: 3.494952e-03	ci left: 3.509830e-01	ci right 3.522122e-01	k: 815706	n:2320000
KS ci ratio: 2.180994e-01	ci left: 1.240467e-04	ci right 1.548101e-04	k: 322	n:2320000
KALRN   2320000 perm   3198 sec   (725 perm/sec)   p_kst 1.387931e-04   p_cons 3.515974e-01   p_joint 1.387931e-04

Joint ci ratio: 2.180995e-01	ci left: 1.235143e-04	ci right 1.541457e-04	k: 322	n:2330000
Cons ci ratio: 3.487464e-03	ci left: 3.509817e-01	ci right 3.522083e-01	k: 819216	n:2330000
KS ci ratio: 2.180995e-01	ci left: 1.235143e-04	ci right 1.541457e-04	k: 322	n:2330000
KALRN   2330000 perm   3221 sec   (723 perm/sec)   p_kst 1.381974e-04   p_cons 3.515948e-01   p_joint 1.381974e-04

Joint ci ratio: 2.174273e-01	ci left: 1.237945e-04	ci right 1.543882e-04	k: 324	n:2340000
Cons ci ratio: 3.479850e-03	ci left: 3.510032e-01	ci right 3.522271e-01	k: 822779	n:2340000
KS ci ratio: 2.174273e-01	ci left: 1.237945e-04	ci right 1.543882e-04	k: 324	n:2340000
KALRN   2340000 perm   3245 sec   (721 perm/sec)   p_kst 1.384615e-04   p_cons 3.516150e-01   p_joint 1.384615e-04

Joint ci ratio: 2.161014e-01	ci left: 1.248775e-04	ci right 1.555256e-04	k: 328	n:2350000
Cons ci ratio: 3.472786e-03	ci left: 3.509589e-01	ci right 3.521802e-01	k: 826188	n:2350000
KS ci ratio: 2.161014e-01	ci left: 1.248775e-04	ci right 1.555256e-04	k: 328	n:2350000
KALRN   2350000 perm   3269 sec   (719 perm/sec)   p_kst 1.395745e-04   p_cons 3.515694e-01   p_joint 1.395745e-04

Joint ci ratio: 2.161015e-01	ci left: 1.243483e-04	ci right 1.548666e-04	k: 328	n:2360000
Cons ci ratio: 3.465635e-03	ci left: 3.509319e-01	ci right 3.521506e-01	k: 829637	n:2360000
KS ci ratio: 2.161015e-01	ci left: 1.243483e-04	ci right 1.548666e-04	k: 328	n:2360000
KALRN   2360000 perm   3292 sec   (717 perm/sec)   p_kst 1.389831e-04   p_cons 3.515411e-01   p_joint 1.389831e-04

Joint ci ratio: 2.144777e-01	ci left: 1.258196e-04	ci right 1.564364e-04	k: 333	n:2370000
Cons ci ratio: 3.458573e-03	ci left: 3.508993e-01	ci right 3.521154e-01	k: 833072	n:2370000
KS ci ratio: 2.144777e-01	ci left: 1.258196e-04	ci right 1.564364e-04	k: 333	n:2370000
KALRN   2370000 perm   3316 sec   (715 perm/sec)   p_kst 1.405063e-04   p_cons 3.515072e-01   p_joint 1.405063e-04

Joint ci ratio: 2.135208e-01	ci left: 1.264839e-04	ci right 1.571070e-04	k: 336	n:2380000
Cons ci ratio: 3.451532e-03	ci left: 3.508699e-01	ci right 3.520834e-01	k: 836514	n:2380000
KS ci ratio: 2.135208e-01	ci left: 1.264839e-04	ci right 1.571070e-04	k: 336	n:2380000
KALRN   2380000 perm   3340 sec   (713 perm/sec)   p_kst 1.411765e-04   p_cons 3.514765e-01   p_joint 1.411765e-04

Joint ci ratio: 2.132048e-01	ci left: 1.263508e-04	ci right 1.568904e-04	k: 337	n:2390000
Cons ci ratio: 3.444287e-03	ci left: 3.508733e-01	ci right 3.520843e-01	k: 840034	n:2390000
KS ci ratio: 2.132048e-01	ci left: 1.263508e-04	ci right 1.568904e-04	k: 337	n:2390000
KALRN   2390000 perm   3364 sec   (710 perm/sec)   p_kst 1.410042e-04   p_cons 3.514787e-01   p_joint 1.410042e-04

Joint ci ratio: 2.125767e-01	ci left: 1.266132e-04	ci right 1.571144e-04	k: 339	n:2400000
Cons ci ratio: 3.437097e-03	ci left: 3.508755e-01	ci right 3.520840e-01	k: 843551	n:2400000
KS ci ratio: 2.125767e-01	ci left: 1.266132e-04	ci right 1.571144e-04	k: 339	n:2400000
KALRN   2400000 perm   3388 sec   (708 perm/sec)   p_kst 1.412500e-04   p_cons 3.514796e-01   p_joint 1.412500e-04

Joint ci ratio: 2.119542e-01	ci left: 1.268736e-04	ci right 1.573364e-04	k: 341	n:2410000
Cons ci ratio: 3.430068e-03	ci left: 3.508624e-01	ci right 3.520683e-01	k: 847031	n:2410000
KS ci ratio: 2.119542e-01	ci left: 1.268736e-04	ci right 1.573364e-04	k: 341	n:2410000
KALRN   2410000 perm   3412 sec   (706 perm/sec)   p_kst 1.414938e-04   p_cons 3.514651e-01   p_joint 1.414938e-04

Joint ci ratio: 2.116451e-01	ci left: 1.267406e-04	ci right 1.571214e-04	k: 342	n:2420000
Cons ci ratio: 3.422938e-03	ci left: 3.508683e-01	ci right 3.520717e-01	k: 850557	n:2420000
KS ci ratio: 2.116451e-01	ci left: 1.267406e-04	ci right 1.571214e-04	k: 342	n:2420000
KALRN   2420000 perm   3436 sec   (704 perm/sec)   p_kst 1.413223e-04   p_cons 3.514698e-01   p_joint 1.413223e-04

Joint ci ratio: 2.110307e-01	ci left: 1.269986e-04	ci right 1.573413e-04	k: 344	n:2430000
Cons ci ratio: 3.415875e-03	ci left: 3.508713e-01	ci right 3.520723e-01	k: 854076	n:2430000
KS ci ratio: 2.110307e-01	ci left: 1.269986e-04	ci right 1.573413e-04	k: 344	n:2430000
KALRN   2430000 perm   3460 sec   (702 perm/sec)   p_kst 1.415638e-04   p_cons 3.514716e-01   p_joint 1.415638e-04

Joint ci ratio: 2.104216e-01	ci left: 1.272545e-04	ci right 1.575593e-04	k: 346	n:2440000
Cons ci ratio: 3.408940e-03	ci left: 3.508628e-01	ci right 3.520613e-01	k: 857567	n:2440000
KS ci ratio: 2.104216e-01	ci left: 1.272545e-04	ci right 1.575593e-04	k: 346	n:2440000
KALRN   2440000 perm   3485 sec   (700 perm/sec)   p_kst 1.418033e-04   p_cons 3.514619e-01   p_joint 1.418033e-04

Joint ci ratio: 2.104217e-01	ci left: 1.267351e-04	ci right 1.569162e-04	k: 346	n:2450000
Cons ci ratio: 3.401954e-03	ci left: 3.508670e-01	ci right 3.520631e-01	k: 861089	n:2450000
KS ci ratio: 2.104217e-01	ci left: 1.267351e-04	ci right 1.569162e-04	k: 346	n:2450000
KALRN   2450000 perm   3509 sec   (698 perm/sec)   p_kst 1.412245e-04   p_cons 3.514649e-01   p_joint 1.412245e-04

Joint ci ratio: 2.104217e-01	ci left: 1.262199e-04	ci right 1.562784e-04	k: 346	n:2460000
Cons ci ratio: 3.395028e-03	ci left: 3.508688e-01	ci right 3.520624e-01	k: 864605	n:2460000
KS ci ratio: 2.104217e-01	ci left: 1.262199e-04	ci right 1.562784e-04	k: 346	n:2460000
KALRN   2460000 perm   3534 sec   (696 perm/sec)   p_kst 1.406504e-04   p_cons 3.514654e-01   p_joint 1.406504e-04

Joint ci ratio: 2.101192e-01	ci left: 1.260924e-04	ci right 1.560718e-04	k: 347	n:2470000
Cons ci ratio: 3.388072e-03	ci left: 3.508803e-01	ci right 3.520715e-01	k: 868145	n:2470000
KS ci ratio: 2.101192e-01	ci left: 1.260924e-04	ci right 1.560718e-04	k: 347	n:2470000
KALRN   2470000 perm   3559 sec   (694 perm/sec)   p_kst 1.404858e-04   p_cons 3.514757e-01   p_joint 1.404858e-04

Joint ci ratio: 2.098180e-01	ci left: 1.259660e-04	ci right 1.558669e-04	k: 348	n:2480000
Cons ci ratio: 3.381081e-03	ci left: 3.509021e-01	ci right 3.520910e-01	k: 871711	n:2480000
KS ci ratio: 2.098180e-01	ci left: 1.259660e-04	ci right 1.558669e-04	k: 348	n:2480000
KALRN   2480000 perm   3584 sec   (692 perm/sec)   p_kst 1.403226e-04   p_cons 3.514964e-01   p_joint 1.403226e-04

Joint ci ratio: 2.092193e-01	ci left: 1.262212e-04	ci right 1.560862e-04	k: 350	n:2490000
Cons ci ratio: 3.374562e-03	ci left: 3.508660e-01	ci right 3.520524e-01	k: 875133	n:2490000
KS ci ratio: 2.092193e-01	ci left: 1.262212e-04	ci right 1.560862e-04	k: 350	n:2490000
KALRN   2490000 perm   3609 sec   (690 perm/sec)   p_kst 1.405622e-04   p_cons 3.514590e-01   p_joint 1.405622e-04

Joint ci ratio: 2.092194e-01	ci left: 1.257163e-04	ci right 1.554619e-04	k: 350	n:2500000
Cons ci ratio: 3.367852e-03	ci left: 3.508610e-01	ci right 3.520450e-01	k: 878632	n:2500000
KS ci ratio: 2.092194e-01	ci left: 1.257163e-04	ci right 1.554619e-04	k: 350	n:2500000
KALRN   2500000 perm   3634 sec   (688 perm/sec)   p_kst 1.400000e-04   p_cons 3.514528e-01   p_joint 1.400000e-04

Joint ci ratio: 2.092194e-01	ci left: 1.252154e-04	ci right 1.548425e-04	k: 350	n:2510000
Cons ci ratio: 3.361214e-03	ci left: 3.508516e-01	ci right 3.520332e-01	k: 882120	n:2510000
KS ci ratio: 2.092194e-01	ci left: 1.252154e-04	ci right 1.548425e-04	k: 350	n:2510000
KALRN   2510000 perm   3659 sec   (686 perm/sec)   p_kst 1.394422e-04   p_cons 3.514422e-01   p_joint 1.394422e-04

Joint ci ratio: 2.089221e-01	ci left: 1.250946e-04	ci right 1.546456e-04	k: 351	n:2520000
Cons ci ratio: 3.354794e-03	ci left: 3.508181e-01	ci right 3.519973e-01	k: 885547	n:2520000
KS ci ratio: 2.089221e-01	ci left: 1.250946e-04	ci right 1.546456e-04	k: 351	n:2520000
KALRN   2520000 perm   3684 sec   (684 perm/sec)   p_kst 1.392857e-04   p_cons 3.514075e-01   p_joint 1.392857e-04

Joint ci ratio: 2.086260e-01	ci left: 1.249747e-04	ci right 1.544503e-04	k: 352	n:2530000
Cons ci ratio: 3.348076e-03	ci left: 3.508303e-01	ci right 3.520072e-01	k: 889089	n:2530000
KS ci ratio: 2.086260e-01	ci left: 1.249747e-04	ci right 1.544503e-04	k: 352	n:2530000
KALRN   2530000 perm   3710 sec   (682 perm/sec)   p_kst 1.391304e-04   p_cons 3.514186e-01   p_joint 1.391304e-04

Joint ci ratio: 2.077450e-01	ci left: 1.256023e-04	ci right 1.550848e-04	k: 355	n:2540000
Cons ci ratio: 3.341491e-03	ci left: 3.508298e-01	ci right 3.520044e-01	k: 892599	n:2540000
KS ci ratio: 2.077450e-01	ci left: 1.256023e-04	ci right 1.550848e-04	k: 355	n:2540000
KALRN   2540000 perm   3737 sec   (680 perm/sec)   p_kst 1.397638e-04   p_cons 3.514169e-01   p_joint 1.397638e-04

Joint ci ratio: 2.068751e-01	ci left: 1.262251e-04	ci right 1.557141e-04	k: 358	n:2550000
Cons ci ratio: 3.334939e-03	ci left: 3.508301e-01	ci right 3.520024e-01	k: 896111	n:2550000
KS ci ratio: 2.068751e-01	ci left: 1.262251e-04	ci right 1.557141e-04	k: 358	n:2550000
KALRN   2550000 perm   3763 sec   (678 perm/sec)   p_kst 1.403922e-04   p_cons 3.514161e-01   p_joint 1.403922e-04

Joint ci ratio: 2.068751e-01	ci left: 1.257320e-04	ci right 1.551058e-04	k: 358	n:2560000
Cons ci ratio: 3.328328e-03	ci left: 3.508437e-01	ci right 3.520137e-01	k: 899657	n:2560000
KS ci ratio: 2.068751e-01	ci left: 1.257320e-04	ci right 1.551058e-04	k: 358	n:2560000
KALRN   2560000 perm   3788 sec   (676 perm/sec)   p_kst 1.398437e-04   p_cons 3.514285e-01   p_joint 1.398437e-04

Joint ci ratio: 2.063013e-01	ci left: 1.259808e-04	ci right 1.553207e-04	k: 360	n:2570000
Cons ci ratio: 3.321842e-03	ci left: 3.508455e-01	ci right 3.520132e-01	k: 903173	n:2570000
KS ci ratio: 2.063013e-01	ci left: 1.259808e-04	ci right 1.553207e-04	k: 360	n:2570000
KALRN   2570000 perm   3814 sec   (674 perm/sec)   p_kst 1.400778e-04   p_cons 3.514292e-01   p_joint 1.400778e-04

Joint ci ratio: 2.057321e-01	ci left: 1.262277e-04	ci right 1.555338e-04	k: 362	n:2580000
Cons ci ratio: 3.315074e-03	ci left: 3.508910e-01	ci right 3.520566e-01	k: 906802	n:2580000
KS ci ratio: 2.057321e-01	ci left: 1.262277e-04	ci right 1.555338e-04	k: 362	n:2580000
KALRN   2580000 perm   3840 sec   (672 perm/sec)   p_kst 1.403101e-04   p_cons 3.514736e-01   p_joint 1.403101e-04

Joint ci ratio: 2.057322e-01	ci left: 1.257403e-04	ci right 1.549333e-04	k: 362	n:2590000
Cons ci ratio: 3.308763e-03	ci left: 3.508792e-01	ci right 3.520424e-01	k: 910283	n:2590000
KS ci ratio: 2.057322e-01	ci left: 1.257403e-04	ci right 1.549333e-04	k: 362	n:2590000
KALRN   2590000 perm   3866 sec   (670 perm/sec)   p_kst 1.397683e-04   p_cons 3.514606e-01   p_joint 1.397683e-04

Joint ci ratio: 2.054494e-01	ci left: 1.256215e-04	ci right 1.547418e-04	k: 363	n:2600000
Cons ci ratio: 3.302429e-03	ci left: 3.508754e-01	ci right 3.520364e-01	k: 913785	n:2600000
KS ci ratio: 2.054494e-01	ci left: 1.256215e-04	ci right 1.547418e-04	k: 363	n:2600000
KALRN   2600000 perm   3891 sec   (668 perm/sec)   p_kst 1.396154e-04   p_cons 3.514558e-01   p_joint 1.396154e-04

Joint ci ratio: 2.048873e-01	ci left: 1.258671e-04	ci right 1.549545e-04	k: 365	n:2610000
Cons ci ratio: 3.296029e-03	ci left: 3.508859e-01	ci right 3.520447e-01	k: 917324	n:2610000
KS ci ratio: 2.048873e-01	ci left: 1.258671e-04	ci right 1.549545e-04	k: 365	n:2610000
KALRN   2610000 perm   3918 sec   (666 perm/sec)   p_kst 1.398467e-04   p_cons 3.514651e-01   p_joint 1.398467e-04

Joint ci ratio: 2.040526e-01	ci left: 1.264731e-04	ci right 1.555666e-04	k: 368	n:2620000
Cons ci ratio: 3.289991e-03	ci left: 3.508513e-01	ci right 3.520078e-01	k: 920745	n:2620000
KS ci ratio: 2.040526e-01	ci left: 1.264731e-04	ci right 1.555666e-04	k: 368	n:2620000
KALRN   2620000 perm   3944 sec   (664 perm/sec)   p_kst 1.404580e-04   p_cons 3.514294e-01   p_joint 1.404580e-04

Joint ci ratio: 2.035019e-01	ci left: 1.267139e-04	ci right 1.557743e-04	k: 370	n:2630000
Cons ci ratio: 3.283862e-03	ci left: 3.508340e-01	ci right 3.519884e-01	k: 924211	n:2630000
KS ci ratio: 2.035019e-01	ci left: 1.267139e-04	ci right 1.557743e-04	k: 370	n:2630000
KALRN   2630000 perm   3970 sec   (662 perm/sec)   p_kst 1.406844e-04   p_cons 3.514110e-01   p_joint 1.406844e-04

Joint ci ratio: 2.029555e-01	ci left: 1.269529e-04	ci right 1.559804e-04	k: 372	n:2640000
Cons ci ratio: 3.277724e-03	ci left: 3.508230e-01	ci right 3.519751e-01	k: 927693	n:2640000
KS ci ratio: 2.029555e-01	ci left: 1.269529e-04	ci right 1.559804e-04	k: 372	n:2640000
KALRN   2640000 perm   3996 sec   (661 perm/sec)   p_kst 1.409091e-04   p_cons 3.513989e-01   p_joint 1.409091e-04

Joint ci ratio: 2.026840e-01	ci left: 1.268321e-04	ci right 1.557883e-04	k: 373	n:2650000
Cons ci ratio: 3.271326e-03	ci left: 3.508531e-01	ci right 3.520031e-01	k: 931284	n:2650000
KS ci ratio: 2.026840e-01	ci left: 1.268321e-04	ci right 1.557883e-04	k: 373	n:2650000
KALRN   2650000 perm   4023 sec   (659 perm/sec)   p_kst 1.407547e-04   p_cons 3.514279e-01   p_joint 1.407547e-04

Joint ci ratio: 2.016087e-01	ci left: 1.277829e-04	ci right 1.567823e-04	k: 377	n:2660000
Cons ci ratio: 3.264951e-03	ci left: 3.508849e-01	ci right 3.520327e-01	k: 934880	n:2660000
KS ci ratio: 2.016087e-01	ci left: 1.277829e-04	ci right 1.567823e-04	k: 377	n:2660000
KALRN   2660000 perm   4050 sec   (657 perm/sec)   p_kst 1.417293e-04   p_cons 3.514586e-01   p_joint 1.417293e-04

Joint ci ratio: 2.010774e-01	ci left: 1.280156e-04	ci right 1.569819e-04	k: 379	n:2670000
Cons ci ratio: 3.258682e-03	ci left: 3.509067e-01	ci right 3.520524e-01	k: 938450	n:2670000
KS ci ratio: 2.010774e-01	ci left: 1.280156e-04	ci right 1.569819e-04	k: 379	n:2670000
KALRN   2670000 perm   4077 sec   (655 perm/sec)   p_kst 1.419476e-04   p_cons 3.514794e-01   p_joint 1.419476e-04

Joint ci ratio: 2.005503e-01	ci left: 1.282467e-04	ci right 1.571799e-04	k: 381	n:2680000
Cons ci ratio: 3.252602e-03	ci left: 3.509071e-01	ci right 3.520507e-01	k: 941963	n:2680000
KS ci ratio: 2.005503e-01	ci left: 1.282467e-04	ci right 1.571799e-04	k: 381	n:2680000
KALRN   2680000 perm   4103 sec   (653 perm/sec)   p_kst 1.421642e-04   p_cons 3.514787e-01   p_joint 1.421642e-04

Joint ci ratio: 2.002883e-01	ci left: 1.281230e-04	ci right 1.569860e-04	k: 382	n:2690000
Cons ci ratio: 3.246568e-03	ci left: 3.509056e-01	ci right 3.520471e-01	k: 945471	n:2690000
KS ci ratio: 2.002883e-01	ci left: 1.281230e-04	ci right 1.569860e-04	k: 382	n:2690000
KALRN   2690000 perm   4130 sec   (651 perm/sec)   p_kst 1.420074e-04   p_cons 3.514762e-01   p_joint 1.420074e-04

Joint ci ratio: 2.000274e-01	ci left: 1.280003e-04	ci right 1.567935e-04	k: 383	n:2700000
Cons ci ratio: 3.240629e-03	ci left: 3.508957e-01	ci right 3.520350e-01	k: 948956	n:2700000
KS ci ratio: 2.000274e-01	ci left: 1.280003e-04	ci right 1.567935e-04	k: 383	n:2700000
KALRN   2700000 perm   4158 sec   (649 perm/sec)   p_kst 1.418519e-04   p_cons 3.514652e-01   p_joint 1.418519e-04

Joint ci ratio: 1.997675e-01	ci left: 1.278785e-04	ci right 1.566023e-04	k: 384	n:2710000
Cons ci ratio: 3.234544e-03	ci left: 3.509109e-01	ci right 3.520481e-01	k: 952509	n:2710000
KS ci ratio: 1.997675e-01	ci left: 1.278785e-04	ci right 1.566023e-04	k: 384	n:2710000
KALRN   2710000 perm   4184 sec   (648 perm/sec)   p_kst 1.416974e-04   p_cons 3.514793e-01   p_joint 1.416974e-04

Joint ci ratio: 1.995086e-01	ci left: 1.277576e-04	ci right 1.564126e-04	k: 385	n:2720000
Cons ci ratio: 3.228564e-03	ci left: 3.509160e-01	ci right 3.520512e-01	k: 956035	n:2720000
KS ci ratio: 1.995086e-01	ci left: 1.277576e-04	ci right 1.564126e-04	k: 385	n:2720000
KALRN   2720000 perm   4211 sec   (646 perm/sec)   p_kst 1.415441e-04   p_cons 3.514835e-01   p_joint 1.415441e-04

Joint ci ratio: 1.995086e-01	ci left: 1.272897e-04	ci right 1.558397e-04	k: 385	n:2730000
Cons ci ratio: 3.222756e-03	ci left: 3.509014e-01	ci right 3.520344e-01	k: 959507	n:2730000
KS ci ratio: 1.995086e-01	ci left: 1.272897e-04	ci right 1.558397e-04	k: 385	n:2730000
KALRN   2730000 perm   4239 sec   (644 perm/sec)   p_kst 1.410256e-04   p_cons 3.514678e-01   p_joint 1.410256e-04

Joint ci ratio: 1.992507e-01	ci left: 1.271718e-04	ci right 1.556541e-04	k: 386	n:2740000
Cons ci ratio: 3.216882e-03	ci left: 3.509007e-01	ci right 3.520317e-01	k: 963017	n:2740000
KS ci ratio: 1.992507e-01	ci left: 1.271718e-04	ci right 1.556541e-04	k: 386	n:2740000
KALRN   2740000 perm   4267 sec   (642 perm/sec)   p_kst 1.408759e-04   p_cons 3.514661e-01   p_joint 1.408759e-04

Joint ci ratio: 1.992507e-01	ci left: 1.267094e-04	ci right 1.550880e-04	k: 386	n:2750000
Cons ci ratio: 3.210976e-03	ci left: 3.509092e-01	ci right 3.520381e-01	k: 966552	n:2750000
KS ci ratio: 1.992507e-01	ci left: 1.267094e-04	ci right 1.550880e-04	k: 386	n:2750000
KALRN   2750000 perm   4294 sec   (640 perm/sec)   p_kst 1.403636e-04   p_cons 3.514735e-01   p_joint 1.403636e-04

Joint ci ratio: 1.992508e-01	ci left: 1.262503e-04	ci right 1.545261e-04	k: 386	n:2760000
Cons ci ratio: 3.205216e-03	ci left: 3.509012e-01	ci right 3.520281e-01	k: 970042	n:2760000
KS ci ratio: 1.992508e-01	ci left: 1.262503e-04	ci right 1.545261e-04	k: 386	n:2760000
KALRN   2760000 perm   4322 sec   (639 perm/sec)   p_kst 1.398551e-04   p_cons 3.514645e-01   p_joint 1.398551e-04

Joint ci ratio: 1.992508e-01	ci left: 1.257945e-04	ci right 1.539683e-04	k: 386	n:2770000
Cons ci ratio: 3.199402e-03	ci left: 3.509056e-01	ci right 3.520304e-01	k: 973566	n:2770000
KS ci ratio: 1.992508e-01	ci left: 1.257945e-04	ci right 1.539683e-04	k: 386	n:2770000
KALRN   2770000 perm   4350 sec   (637 perm/sec)   p_kst 1.393502e-04   p_cons 3.514679e-01   p_joint 1.393502e-04

Joint ci ratio: 1.989939e-01	ci left: 1.256838e-04	ci right 1.537921e-04	k: 387	n:2780000
Cons ci ratio: 3.193478e-03	ci left: 3.509301e-01	ci right 3.520529e-01	k: 977146	n:2780000
KS ci ratio: 1.989939e-01	ci left: 1.256838e-04	ci right 1.537921e-04	k: 387	n:2780000
KALRN   2780000 perm   4377 sec   (635 perm/sec)   p_kst 1.392086e-04   p_cons 3.514914e-01   p_joint 1.392086e-04

Joint ci ratio: 1.987380e-01	ci left: 1.255739e-04	ci right 1.536171e-04	k: 388	n:2790000
Cons ci ratio: 3.187636e-03	ci left: 3.509473e-01	ci right 3.520681e-01	k: 980706	n:2790000
KS ci ratio: 1.987380e-01	ci left: 1.255739e-04	ci right 1.536171e-04	k: 388	n:2790000
KALRN   2790000 perm   4404 sec   (633 perm/sec)   p_kst 1.390681e-04   p_cons 3.515075e-01   p_joint 1.390681e-04

Joint ci ratio: 1.979760e-01	ci left: 1.261436e-04	ci right 1.541930e-04	k: 391	n:2800000
Cons ci ratio: 3.182076e-03	ci left: 3.509286e-01	ci right 3.520474e-01	k: 984166	n:2800000
KS ci ratio: 1.979760e-01	ci left: 1.261436e-04	ci right 1.541930e-04	k: 391	n:2800000
KALRN   2800000 perm   4432 sec   (632 perm/sec)   p_kst 1.396429e-04   p_cons 3.514879e-01   p_joint 1.396429e-04

Joint ci ratio: 1.977240e-01	ci left: 1.260330e-04	ci right 1.540178e-04	k: 392	n:2810000
Cons ci ratio: 3.176263e-03	ci left: 3.509506e-01	ci right 3.520675e-01	k: 987740	n:2810000
KS ci ratio: 1.977240e-01	ci left: 1.260330e-04	ci right 1.540178e-04	k: 392	n:2810000
KALRN   2810000 perm   4461 sec   (630 perm/sec)   p_kst 1.395018e-04   p_cons 3.515089e-01   p_joint 1.395018e-04

Joint ci ratio: 1.974729e-01	ci left: 1.259231e-04	ci right 1.538437e-04	k: 393	n:2820000
Cons ci ratio: 3.170419e-03	ci left: 3.509814e-01	ci right 3.520962e-01	k: 991339	n:2820000
KS ci ratio: 1.974729e-01	ci left: 1.259231e-04	ci right 1.538437e-04	k: 393	n:2820000
KALRN   2820000 perm   4489 sec   (628 perm/sec)   p_kst 1.393617e-04   p_cons 3.515387e-01   p_joint 1.393617e-04

Joint ci ratio: 1.974730e-01	ci left: 1.254782e-04	ci right 1.533001e-04	k: 393	n:2830000
Cons ci ratio: 3.164738e-03	ci left: 3.509932e-01	ci right 3.521061e-01	k: 994885	n:2830000
KS ci ratio: 1.974730e-01	ci left: 1.254782e-04	ci right 1.533001e-04	k: 393	n:2830000
KALRN   2830000 perm   4517 sec   (627 perm/sec)   p_kst 1.388693e-04   p_cons 3.515495e-01   p_joint 1.388693e-04

Joint ci ratio: 1.974730e-01	ci left: 1.250363e-04	ci right 1.527603e-04	k: 393	n:2840000
Cons ci ratio: 3.159199e-03	ci left: 3.509887e-01	ci right 3.520996e-01	k: 998385	n:2840000
KS ci ratio: 1.974730e-01	ci left: 1.250363e-04	ci right 1.527603e-04	k: 393	n:2840000
KALRN   2840000 perm   4547 sec   (625 perm/sec)   p_kst 1.383803e-04   p_cons 3.515440e-01   p_joint 1.383803e-04

Joint ci ratio: 1.967254e-01	ci left: 1.255983e-04	ci right 1.533288e-04	k: 396	n:2850000
Cons ci ratio: 3.153667e-03	ci left: 3.509874e-01	ci right 3.520964e-01	k: 1001894	n:2850000
KS ci ratio: 1.967254e-01	ci left: 1.255983e-04	ci right 1.533288e-04	k: 396	n:2850000
KALRN   2850000 perm   4576 sec   (623 perm/sec)   p_kst 1.389474e-04   p_cons 3.515418e-01   p_joint 1.389474e-04

Joint ci ratio: 1.964781e-01	ci left: 1.254916e-04	ci right 1.531596e-04	k: 397	n:2860000
Cons ci ratio: 3.148370e-03	ci left: 3.509564e-01	ci right 3.520634e-01	k: 1005318	n:2860000
KS ci ratio: 1.964781e-01	ci left: 1.254916e-04	ci right 1.531596e-04	k: 397	n:2860000
KALRN   2860000 perm   4604 sec   (621 perm/sec)   p_kst 1.388112e-04   p_cons 3.515098e-01   p_joint 1.388112e-04

Joint ci ratio: 1.962318e-01	ci left: 1.253856e-04	ci right 1.529915e-04	k: 398	n:2870000
Cons ci ratio: 3.142801e-03	ci left: 3.509689e-01	ci right 3.520739e-01	k: 1008866	n:2870000
KS ci ratio: 1.962318e-01	ci left: 1.253856e-04	ci right 1.529915e-04	k: 398	n:2870000
KALRN   2870000 perm   4633 sec   (619 perm/sec)   p_kst 1.386760e-04   p_cons 3.515213e-01   p_joint 1.386760e-04

Joint ci ratio: 1.962318e-01	ci left: 1.249503e-04	ci right 1.524602e-04	k: 398	n:2880000
Cons ci ratio: 3.137517e-03	ci left: 3.509441e-01	ci right 3.520472e-01	k: 1012307	n:2880000
KS ci ratio: 1.962318e-01	ci left: 1.249503e-04	ci right 1.524602e-04	k: 398	n:2880000
KALRN   2880000 perm   4663 sec   (618 perm/sec)   p_kst 1.381944e-04   p_cons 3.514955e-01   p_joint 1.381944e-04

Joint ci ratio: 1.959864e-01	ci left: 1.248469e-04	ci right 1.522957e-04	k: 399	n:2890000
Cons ci ratio: 3.132015e-03	ci left: 3.509551e-01	ci right 3.520563e-01	k: 1015851	n:2890000
KS ci ratio: 1.959864e-01	ci left: 1.248469e-04	ci right 1.522957e-04	k: 399	n:2890000
KALRN   2890000 perm   4691 sec   (616 perm/sec)   p_kst 1.380623e-04   p_cons 3.515055e-01   p_joint 1.380623e-04

Joint ci ratio: 1.954982e-01	ci left: 1.250723e-04	ci right 1.524939e-04	k: 401	n:2900000
Cons ci ratio: 3.126573e-03	ci left: 3.509615e-01	ci right 3.520609e-01	k: 1019382	n:2900000
KS ci ratio: 1.954982e-01	ci left: 1.250723e-04	ci right 1.524939e-04	k: 401	n:2900000
KALRN   2900000 perm   4720 sec   (614 perm/sec)   p_kst 1.382759e-04   p_cons 3.515110e-01   p_joint 1.382759e-04

Joint ci ratio: 1.950137e-01	ci left: 1.252962e-04	ci right 1.526907e-04	k: 403	n:2910000
Cons ci ratio: 3.121321e-03	ci left: 3.509442e-01	ci right 3.520417e-01	k: 1022844	n:2910000
KS ci ratio: 1.950137e-01	ci left: 1.252962e-04	ci right 1.526907e-04	k: 403	n:2910000
KALRN   2910000 perm   4749 sec   (613 perm/sec)   p_kst 1.384880e-04   p_cons 3.514928e-01   p_joint 1.384880e-04

Joint ci ratio: 1.945328e-01	ci left: 1.255186e-04	ci right 1.528861e-04	k: 405	n:2920000
Cons ci ratio: 3.116297e-03	ci left: 3.508976e-01	ci right 3.519931e-01	k: 1026220	n:2920000
KS ci ratio: 1.945328e-01	ci left: 1.255186e-04	ci right 1.528861e-04	k: 405	n:2920000
KALRN   2920000 perm   4777 sec   (611 perm/sec)   p_kst 1.386986e-04   p_cons 3.514452e-01   p_joint 1.386986e-04

Joint ci ratio: 1.940554e-01	ci left: 1.257396e-04	ci right 1.530801e-04	k: 407	n:2930000
Cons ci ratio: 3.111157e-03	ci left: 3.508718e-01	ci right 3.519654e-01	k: 1029656	n:2930000
KS ci ratio: 1.940554e-01	ci left: 1.257396e-04	ci right 1.530801e-04	k: 407	n:2930000
KALRN   2930000 perm   4807 sec   (610 perm/sec)   p_kst 1.389078e-04   p_cons 3.514184e-01   p_joint 1.389078e-04

Joint ci ratio: 1.940554e-01	ci left: 1.253119e-04	ci right 1.525594e-04	k: 407	n:2940000
Cons ci ratio: 3.105484e-03	ci left: 3.509280e-01	ci right 3.520199e-01	k: 1033333	n:2940000
KS ci ratio: 1.940554e-01	ci left: 1.253119e-04	ci right 1.525594e-04	k: 407	n:2940000
KALRN   2940000 perm   4836 sec   (608 perm/sec)   p_kst 1.384354e-04   p_cons 3.514738e-01   p_joint 1.384354e-04

Joint ci ratio: 1.931110e-01	ci left: 1.261774e-04	ci right 1.534638e-04	k: 411	n:2950000
Cons ci ratio: 3.100188e-03	ci left: 3.509331e-01	ci right 3.520231e-01	k: 1036860	n:2950000
KS ci ratio: 1.931110e-01	ci left: 1.261774e-04	ci right 1.534638e-04	k: 411	n:2950000
KALRN   2950000 perm   4865 sec   (606 perm/sec)   p_kst 1.393220e-04   p_cons 3.514780e-01   p_joint 1.393220e-04

Joint ci ratio: 1.921803e-01	ci left: 1.270373e-04	ci right 1.543618e-04	k: 415	n:2960000
Cons ci ratio: 3.094807e-03	ci left: 3.509547e-01	ci right 3.520429e-01	k: 1040436	n:2960000
KS ci ratio: 1.921803e-01	ci left: 1.270373e-04	ci right 1.543618e-04	k: 415	n:2960000
KALRN   2960000 perm   4894 sec   (605 perm/sec)   p_kst 1.402027e-04   p_cons 3.514986e-01   p_joint 1.402027e-04

Joint ci ratio: 1.919497e-01	ci left: 1.269301e-04	ci right 1.541949e-04	k: 416	n:2970000
Cons ci ratio: 3.089581e-03	ci left: 3.509573e-01	ci right 3.520436e-01	k: 1043956	n:2970000
KS ci ratio: 1.919497e-01	ci left: 1.269301e-04	ci right 1.541949e-04	k: 416	n:2970000
KALRN   2970000 perm   4923 sec   (603 perm/sec)   p_kst 1.400673e-04   p_cons 3.515003e-01   p_joint 1.400673e-04

Joint ci ratio: 1.919498e-01	ci left: 1.265041e-04	ci right 1.536775e-04	k: 416	n:2980000
Cons ci ratio: 3.084433e-03	ci left: 3.509522e-01	ci right 3.520367e-01	k: 1047453	n:2980000
KS ci ratio: 1.919498e-01	ci left: 1.265041e-04	ci right 1.536775e-04	k: 416	n:2980000
KALRN   2980000 perm   4953 sec   (602 perm/sec)   p_kst 1.395973e-04   p_cons 3.514943e-01   p_joint 1.395973e-04

Joint ci ratio: 1.917200e-01	ci left: 1.263994e-04	ci right 1.535140e-04	k: 417	n:2990000
Cons ci ratio: 3.079400e-03	ci left: 3.509341e-01	ci right 3.520167e-01	k: 1050911	n:2990000
KS ci ratio: 1.917200e-01	ci left: 1.263994e-04	ci right 1.535140e-04	k: 417	n:2990000
KALRN   2990000 perm   4984 sec   (600 perm/sec)   p_kst 1.394649e-04   p_cons 3.514753e-01   p_joint 1.394649e-04

Joint ci ratio: 1.908092e-01	ci left: 1.272476e-04	ci right 1.543994e-04	k: 421	n:3000000
Cons ci ratio: 3.074168e-03	ci left: 3.509491e-01	ci right 3.520299e-01	k: 1054468	n:3000000
KS ci ratio: 1.908092e-01	ci left: 1.272476e-04	ci right 1.543994e-04	k: 421	n:3000000
KALRN   3000000 perm   5014 sec   (598 perm/sec)   p_kst 1.403333e-04   p_cons 3.514893e-01   p_joint 1.403333e-04

Joint ci ratio: 1.908092e-01	ci left: 1.268248e-04	ci right 1.538864e-04	k: 421	n:3010000
Cons ci ratio: 3.068961e-03	ci left: 3.509643e-01	ci right 3.520433e-01	k: 1058026	n:3010000
KS ci ratio: 1.908092e-01	ci left: 1.268248e-04	ci right 1.538864e-04	k: 421	n:3010000
KALRN   3010000 perm   5043 sec   (597 perm/sec)   p_kst 1.398671e-04   p_cons 3.515037e-01   p_joint 1.398671e-04

Joint ci ratio: 1.903586e-01	ci left: 1.270355e-04	ci right 1.540707e-04	k: 423	n:3020000
Cons ci ratio: 3.063954e-03	ci left: 3.509536e-01	ci right 3.520308e-01	k: 1061506	n:3020000
KS ci ratio: 1.903586e-01	ci left: 1.270355e-04	ci right 1.540707e-04	k: 423	n:3020000
KALRN   3020000 perm   5073 sec   (595 perm/sec)   p_kst 1.400662e-04   p_cons 3.514921e-01   p_joint 1.400662e-04

Joint ci ratio: 1.901346e-01	ci left: 1.269306e-04	ci right 1.539080e-04	k: 424	n:3030000
Cons ci ratio: 3.058949e-03	ci left: 3.509462e-01	ci right 3.520217e-01	k: 1064996	n:3030000
KS ci ratio: 1.901346e-01	ci left: 1.269306e-04	ci right 1.539080e-04	k: 424	n:3030000
KALRN   3030000 perm   5103 sec   (594 perm/sec)   p_kst 1.399340e-04   p_cons 3.514838e-01   p_joint 1.399340e-04

Joint ci ratio: 1.894670e-01	ci left: 1.274530e-04	ci right 1.544353e-04	k: 427	n:3040000
Cons ci ratio: 3.053957e-03	ci left: 3.509406e-01	ci right 3.520143e-01	k: 1068491	n:3040000
KS ci ratio: 1.894670e-01	ci left: 1.274530e-04	ci right 1.544353e-04	k: 427	n:3040000
KALRN   3040000 perm   5132 sec   (592 perm/sec)   p_kst 1.404605e-04   p_cons 3.514773e-01   p_joint 1.404605e-04

Joint ci ratio: 1.892460e-01	ci left: 1.273474e-04	ci right 1.542724e-04	k: 428	n:3050000
Cons ci ratio: 3.049086e-03	ci left: 3.509206e-01	ci right 3.519925e-01	k: 1071942	n:3050000
KS ci ratio: 1.892460e-01	ci left: 1.273474e-04	ci right 1.542724e-04	k: 428	n:3050000
KALRN   3050000 perm   5162 sec   (591 perm/sec)   p_kst 1.403279e-04   p_cons 3.514564e-01   p_joint 1.403279e-04

Joint ci ratio: 1.883698e-01	ci left: 1.281767e-04	ci right 1.551371e-04	k: 432	n:3060000
Cons ci ratio: 3.044132e-03	ci left: 3.509167e-01	ci right 3.519869e-01	k: 1075442	n:3060000
KS ci ratio: 1.883698e-01	ci left: 1.281767e-04	ci right 1.551371e-04	k: 432	n:3060000
KALRN   3060000 perm   5192 sec   (589 perm/sec)   p_kst 1.411765e-04   p_cons 3.514516e-01   p_joint 1.411765e-04

Joint ci ratio: 1.881527e-01	ci left: 1.280696e-04	ci right 1.549729e-04	k: 433	n:3070000
Cons ci ratio: 3.039173e-03	ci left: 3.509171e-01	ci right 3.519855e-01	k: 1078955	n:3070000
KS ci ratio: 1.881527e-01	ci left: 1.280696e-04	ci right 1.549729e-04	k: 433	n:3070000
KALRN   3070000 perm   5222 sec   (588 perm/sec)   p_kst 1.410423e-04   p_cons 3.514511e-01   p_joint 1.410423e-04

Joint ci ratio: 1.879363e-01	ci left: 1.279631e-04	ci right 1.548097e-04	k: 434	n:3080000
Cons ci ratio: 3.034139e-03	ci left: 3.509324e-01	ci right 3.519991e-01	k: 1082514	n:3080000
KS ci ratio: 1.879363e-01	ci left: 1.279631e-04	ci right 1.548097e-04	k: 434	n:3080000
KALRN   3080000 perm   5253 sec   (586 perm/sec)   p_kst 1.409091e-04   p_cons 3.514656e-01   p_joint 1.409091e-04

Joint ci ratio: 1.875057e-01	ci left: 1.281658e-04	ci right 1.549863e-04	k: 436	n:3090000
Cons ci ratio: 3.029223e-03	ci left: 3.509337e-01	ci right 3.519986e-01	k: 1086030	n:3090000
KS ci ratio: 1.875057e-01	ci left: 1.281658e-04	ci right 1.549863e-04	k: 436	n:3090000
KALRN   3090000 perm   5283 sec   (585 perm/sec)   p_kst 1.411003e-04   p_cons 3.514660e-01   p_joint 1.411003e-04

Joint ci ratio: 1.870781e-01	ci left: 1.283673e-04	ci right 1.551617e-04	k: 438	n:3100000
Cons ci ratio: 3.024489e-03	ci left: 3.509111e-01	ci right 3.519743e-01	k: 1089472	n:3100000
KS ci ratio: 1.870781e-01	ci left: 1.283673e-04	ci right 1.551617e-04	k: 438	n:3100000
KALRN   3100000 perm   5314 sec   (583 perm/sec)   p_kst 1.412903e-04   p_cons 3.514426e-01   p_joint 1.412903e-04

Joint ci ratio: 1.866534e-01	ci left: 1.285676e-04	ci right 1.553359e-04	k: 440	n:3110000
Cons ci ratio: 3.019700e-03	ci left: 3.509002e-01	ci right 3.519618e-01	k: 1092950	n:3110000
KS ci ratio: 1.866534e-01	ci left: 1.285676e-04	ci right 1.553359e-04	k: 440	n:3110000
KALRN   3110000 perm   5344 sec   (582 perm/sec)   p_kst 1.414791e-04   p_cons 3.514309e-01   p_joint 1.414791e-04

Joint ci ratio: 1.864421e-01	ci left: 1.284610e-04	ci right 1.551735e-04	k: 441	n:3120000
Cons ci ratio: 3.014838e-03	ci left: 3.509039e-01	ci right 3.519637e-01	k: 1096473	n:3120000
KS ci ratio: 1.864421e-01	ci left: 1.284610e-04	ci right 1.551735e-04	k: 441	n:3120000
KALRN   3120000 perm   5374 sec   (581 perm/sec)   p_kst 1.413462e-04   p_cons 3.514337e-01   p_joint 1.413462e-04

Joint ci ratio: 1.862316e-01	ci left: 1.283552e-04	ci right 1.550121e-04	k: 442	n:3130000
Cons ci ratio: 3.010082e-03	ci left: 3.508950e-01	ci right 3.519532e-01	k: 1099957	n:3130000
KS ci ratio: 1.862316e-01	ci left: 1.283552e-04	ci right 1.550121e-04	k: 442	n:3130000
KALRN   3130000 perm   5404 sec   (579 perm/sec)   p_kst 1.412141e-04   p_cons 3.514240e-01   p_joint 1.412141e-04

Joint ci ratio: 1.860218e-01	ci left: 1.282501e-04	ci right 1.548518e-04	k: 443	n:3140000
Cons ci ratio: 3.005399e-03	ci left: 3.508786e-01	ci right 3.519350e-01	k: 1103417	n:3140000
KS ci ratio: 1.860218e-01	ci left: 1.282501e-04	ci right 1.548518e-04	k: 443	n:3140000
KALRN   3140000 perm   5435 sec   (578 perm/sec)   p_kst 1.410828e-04   p_cons 3.514067e-01   p_joint 1.410828e-04

Joint ci ratio: 1.858127e-01	ci left: 1.281456e-04	ci right 1.546924e-04	k: 444	n:3150000
Cons ci ratio: 3.000627e-03	ci left: 3.508791e-01	ci right 3.519339e-01	k: 1106930	n:3150000
KS ci ratio: 1.858127e-01	ci left: 1.281456e-04	ci right 1.546924e-04	k: 444	n:3150000
KALRN   3150000 perm   5465 sec   (576 perm/sec)   p_kst 1.409524e-04   p_cons 3.514063e-01   p_joint 1.409524e-04

Joint ci ratio: 1.853965e-01	ci left: 1.283436e-04	ci right 1.548651e-04	k: 446	n:3160000
Cons ci ratio: 2.995921e-03	ci left: 3.508730e-01	ci right 3.519260e-01	k: 1110422	n:3160000
KS ci ratio: 1.853965e-01	ci left: 1.283436e-04	ci right 1.548651e-04	k: 446	n:3160000
KALRN   3160000 perm   5496 sec   (575 perm/sec)   p_kst 1.411392e-04   p_cons 3.513994e-01   p_joint 1.411392e-04

Joint ci ratio: 1.849831e-01	ci left: 1.285404e-04	ci right 1.550367e-04	k: 448	n:3170000
Cons ci ratio: 2.991333e-03	ci left: 3.508524e-01	ci right 3.519037e-01	k: 1113868	n:3170000
KS ci ratio: 1.849831e-01	ci left: 1.285404e-04	ci right 1.550367e-04	k: 448	n:3170000
KALRN   3170000 perm   5527 sec   (574 perm/sec)   p_kst 1.413249e-04   p_cons 3.513779e-01   p_joint 1.413249e-04

Joint ci ratio: 1.841645e-01	ci left: 1.293359e-04	ci right 1.558651e-04	k: 452	n:3180000
Cons ci ratio: 2.986498e-03	ci left: 3.508727e-01	ci right 3.519225e-01	k: 1117444	n:3180000
KS ci ratio: 1.841645e-01	ci left: 1.293359e-04	ci right 1.558651e-04	k: 452	n:3180000
KALRN   3180000 perm   5558 sec   (572 perm/sec)   p_kst 1.421384e-04   p_cons 3.513975e-01   p_joint 1.421384e-04

Joint ci ratio: 1.835577e-01	ci left: 1.298276e-04	ci right 1.563602e-04	k: 455	n:3190000
Cons ci ratio: 2.981862e-03	ci left: 3.508661e-01	ci right 3.519141e-01	k: 1120934	n:3190000
KS ci ratio: 1.835577e-01	ci left: 1.298276e-04	ci right 1.563602e-04	k: 455	n:3190000
KALRN   3190000 perm   5589 sec   (571 perm/sec)   p_kst 1.426332e-04   p_cons 3.513900e-01   p_joint 1.426332e-04

Joint ci ratio: 1.835577e-01	ci left: 1.294219e-04	ci right 1.558715e-04	k: 455	n:3200000
Cons ci ratio: 2.977195e-03	ci left: 3.508675e-01	ci right 3.519140e-01	k: 1124450	n:3200000
KS ci ratio: 1.835577e-01	ci left: 1.294219e-04	ci right 1.558715e-04	k: 455	n:3200000
KALRN   3200000 perm   5619 sec   (569 perm/sec)   p_kst 1.421875e-04   p_cons 3.513906e-01   p_joint 1.421875e-04

Joint ci ratio: 1.833568e-01	ci left: 1.293160e-04	ci right 1.557118e-04	k: 456	n:3210000
Cons ci ratio: 2.972448e-03	ci left: 3.508846e-01	ci right 3.519294e-01	k: 1128016	n:3210000
KS ci ratio: 1.833568e-01	ci left: 1.293160e-04	ci right 1.557118e-04	k: 456	n:3210000
KALRN   3210000 perm   5651 sec   (568 perm/sec)   p_kst 1.420561e-04   p_cons 3.514069e-01   p_joint 1.420561e-04

Joint ci ratio: 1.833568e-01	ci left: 1.289144e-04	ci right 1.552282e-04	k: 456	n:3220000
Cons ci ratio: 2.967761e-03	ci left: 3.508959e-01	ci right 3.519391e-01	k: 1131564	n:3220000
KS ci ratio: 1.833568e-01	ci left: 1.289144e-04	ci right 1.552282e-04	k: 456	n:3220000
KALRN   3220000 perm   5681 sec   (567 perm/sec)   p_kst 1.416149e-04   p_cons 3.514174e-01   p_joint 1.416149e-04

Joint ci ratio: 1.827579e-01	ci left: 1.294015e-04	ci right 1.557189e-04	k: 459	n:3230000
Cons ci ratio: 2.963099e-03	ci left: 3.509066e-01	ci right 3.519482e-01	k: 1135110	n:3230000
KS ci ratio: 1.827579e-01	ci left: 1.294015e-04	ci right 1.557189e-04	k: 459	n:3230000
KALRN   3230000 perm   5713 sec   (565 perm/sec)   p_kst 1.421053e-04   p_cons 3.514272e-01   p_joint 1.421053e-04

Joint ci ratio: 1.825596e-01	ci left: 1.292966e-04	ci right 1.555610e-04	k: 460	n:3240000
Cons ci ratio: 2.958505e-03	ci left: 3.509101e-01	ci right 3.519501e-01	k: 1138633	n:3240000
KS ci ratio: 1.825596e-01	ci left: 1.292966e-04	ci right 1.555610e-04	k: 460	n:3240000
KALRN   3240000 perm   5744 sec   (564 perm/sec)   p_kst 1.419753e-04   p_cons 3.514299e-01   p_joint 1.419753e-04

Joint ci ratio: 1.825596e-01	ci left: 1.288988e-04	ci right 1.550824e-04	k: 460	n:3250000
Cons ci ratio: 2.954027e-03	ci left: 3.508991e-01	ci right 3.519375e-01	k: 1142109	n:3250000
KS ci ratio: 1.825596e-01	ci left: 1.288988e-04	ci right 1.550824e-04	k: 460	n:3250000
KALRN   3250000 perm   5775 sec   (563 perm/sec)   p_kst 1.415385e-04   p_cons 3.514182e-01   p_joint 1.415385e-04

Joint ci ratio: 1.819685e-01	ci left: 1.293817e-04	ci right 1.555689e-04	k: 463	n:3260000
Cons ci ratio: 2.949384e-03	ci left: 3.509167e-01	ci right 3.519535e-01	k: 1145678	n:3260000
KS ci ratio: 1.819685e-01	ci left: 1.293817e-04	ci right 1.555689e-04	k: 463	n:3260000
KALRN   3260000 perm   5807 sec   (561 perm/sec)   p_kst 1.420245e-04   p_cons 3.514350e-01   p_joint 1.420245e-04

Joint ci ratio: 1.817727e-01	ci left: 1.292779e-04	ci right 1.554128e-04	k: 464	n:3270000
Cons ci ratio: 2.944800e-03	ci left: 3.509284e-01	ci right 3.519636e-01	k: 1149228	n:3270000
KS ci ratio: 1.817727e-01	ci left: 1.292779e-04	ci right 1.554128e-04	k: 464	n:3270000
KALRN   3270000 perm   5839 sec   (560 perm/sec)   p_kst 1.418960e-04   p_cons 3.514459e-01   p_joint 1.418960e-04

Joint ci ratio: 1.808031e-01	ci left: 1.303390e-04	ci right 1.565325e-04	k: 469	n:3280000
Cons ci ratio: 2.940165e-03	ci left: 3.509513e-01	ci right 3.519849e-01	k: 1152815	n:3280000
KS ci ratio: 1.808031e-01	ci left: 1.303390e-04	ci right 1.565325e-04	k: 469	n:3280000
KALRN   3280000 perm   5871 sec   (559 perm/sec)   p_kst 1.429878e-04   p_cons 3.514680e-01   p_joint 1.429878e-04

Joint ci ratio: 1.802288e-01	ci left: 1.308135e-04	ci right 1.570097e-04	k: 472	n:3290000
Cons ci ratio: 2.935812e-03	ci left: 3.509336e-01	ci right 3.519657e-01	k: 1156269	n:3290000
KS ci ratio: 1.802288e-01	ci left: 1.308135e-04	ci right 1.570097e-04	k: 472	n:3290000
KALRN   3290000 perm   5903 sec   (557 perm/sec)   p_kst 1.434650e-04   p_cons 3.514495e-01   p_joint 1.434650e-04

Joint ci ratio: 1.796599e-01	ci left: 1.312852e-04	ci right 1.574839e-04	k: 475	n:3300000
Cons ci ratio: 2.931301e-03	ci left: 3.509437e-01	ci right 3.519742e-01	k: 1159814	n:3300000
KS ci ratio: 1.796599e-01	ci left: 1.312852e-04	ci right 1.574839e-04	k: 475	n:3300000
KALRN   3300000 perm   5935 sec   (556 perm/sec)   p_kst 1.439394e-04   p_cons 3.514588e-01   p_joint 1.439394e-04

Joint ci ratio: 1.789097e-01	ci left: 1.320428e-04	ci right 1.582708e-04	k: 479	n:3310000
Cons ci ratio: 2.926818e-03	ci left: 3.509524e-01	ci right 3.519814e-01	k: 1163355	n:3310000
KS ci ratio: 1.789097e-01	ci left: 1.320428e-04	ci right 1.582708e-04	k: 479	n:3310000
KALRN   3310000 perm   5967 sec   (555 perm/sec)   p_kst 1.447130e-04   p_cons 3.514668e-01   p_joint 1.447130e-04

Joint ci ratio: 1.789097e-01	ci left: 1.316451e-04	ci right 1.577941e-04	k: 479	n:3320000
Cons ci ratio: 2.922559e-03	ci left: 3.509295e-01	ci right 3.519569e-01	k: 1166791	n:3320000
KS ci ratio: 1.789097e-01	ci left: 1.316451e-04	ci right 1.577941e-04	k: 479	n:3320000
KALRN   3320000 perm   5998 sec   (553 perm/sec)   p_kst 1.442771e-04   p_cons 3.514431e-01   p_joint 1.442771e-04

Joint ci ratio: 1.785382e-01	ci left: 1.318235e-04	ci right 1.579476e-04	k: 481	n:3330000
Cons ci ratio: 2.918195e-03	ci left: 3.509259e-01	ci right 3.519518e-01	k: 1170291	n:3330000
KS ci ratio: 1.785382e-01	ci left: 1.318235e-04	ci right 1.579476e-04	k: 481	n:3330000
KALRN   3330000 perm   6030 sec   (552 perm/sec)   p_kst 1.444444e-04   p_cons 3.514387e-01   p_joint 1.444444e-04

Joint ci ratio: 1.781689e-01	ci left: 1.320009e-04	ci right 1.581003e-04	k: 483	n:3340000
Cons ci ratio: 2.913799e-03	ci left: 3.509305e-01	ci right 3.519548e-01	k: 1173818	n:3340000
KS ci ratio: 1.781689e-01	ci left: 1.320009e-04	ci right 1.581003e-04	k: 483	n:3340000
KALRN   3340000 perm   6063 sec   (551 perm/sec)   p_kst 1.446108e-04   p_cons 3.514425e-01   p_joint 1.446108e-04

Joint ci ratio: 1.778019e-01	ci left: 1.321773e-04	ci right 1.582519e-04	k: 485	n:3350000
Cons ci ratio: 2.909385e-03	ci left: 3.509410e-01	ci right 3.519638e-01	k: 1177365	n:3350000
KS ci ratio: 1.778019e-01	ci left: 1.321773e-04	ci right 1.582519e-04	k: 485	n:3350000
KALRN   3350000 perm   6096 sec   (550 perm/sec)   p_kst 1.447761e-04   p_cons 3.514522e-01   p_joint 1.447761e-04

Joint ci ratio: 1.776193e-01	ci left: 1.320683e-04	ci right 1.580918e-04	k: 486	n:3360000
Cons ci ratio: 2.904955e-03	ci left: 3.509570e-01	ci right 3.519783e-01	k: 1180931	n:3360000
KS ci ratio: 1.776193e-01	ci left: 1.320683e-04	ci right 1.580918e-04	k: 486	n:3360000
KALRN   3360000 perm   6128 sec   (548 perm/sec)   p_kst 1.446429e-04   p_cons 3.514676e-01   p_joint 1.446429e-04

Joint ci ratio: 1.774372e-01	ci left: 1.319599e-04	ci right 1.579325e-04	k: 487	n:3370000
Cons ci ratio: 2.900565e-03	ci left: 3.509698e-01	ci right 3.519895e-01	k: 1184486	n:3370000
KS ci ratio: 1.774372e-01	ci left: 1.319599e-04	ci right 1.579325e-04	k: 487	n:3370000
KALRN   3370000 perm   6160 sec   (547 perm/sec)   p_kst 1.445104e-04   p_cons 3.514795e-01   p_joint 1.445104e-04

Joint ci ratio: 1.772557e-01	ci left: 1.318522e-04	ci right 1.577743e-04	k: 488	n:3380000
Cons ci ratio: 2.896241e-03	ci left: 3.509753e-01	ci right 3.519936e-01	k: 1188017	n:3380000
KS ci ratio: 1.772557e-01	ci left: 1.318522e-04	ci right 1.577743e-04	k: 488	n:3380000
KALRN   3380000 perm   6193 sec   (546 perm/sec)   p_kst 1.443787e-04   p_cons 3.514843e-01   p_joint 1.443787e-04

Joint ci ratio: 1.768943e-01	ci left: 1.320271e-04	ci right 1.579249e-04	k: 490	n:3390000
Cons ci ratio: 2.892089e-03	ci left: 3.509567e-01	ci right 3.519734e-01	k: 1191466	n:3390000
KS ci ratio: 1.768943e-01	ci left: 1.320271e-04	ci right 1.579249e-04	k: 490	n:3390000
KALRN   3390000 perm   6227 sec   (544 perm/sec)   p_kst 1.445428e-04   p_cons 3.514649e-01   p_joint 1.445428e-04

Joint ci ratio: 1.768943e-01	ci left: 1.316388e-04	ci right 1.574605e-04	k: 490	n:3400000
Cons ci ratio: 2.887818e-03	ci left: 3.509599e-01	ci right 3.519751e-01	k: 1194989	n:3400000
KS ci ratio: 1.768943e-01	ci left: 1.316388e-04	ci right 1.574605e-04	k: 490	n:3400000
KALRN   3400000 perm   6261 sec   (543 perm/sec)   p_kst 1.441176e-04   p_cons 3.514674e-01   p_joint 1.441176e-04

Joint ci ratio: 1.767145e-01	ci left: 1.315330e-04	ci right 1.573049e-04	k: 491	n:3410000
Cons ci ratio: 2.883574e-03	ci left: 3.509616e-01	ci right 3.519753e-01	k: 1198507	n:3410000
KS ci ratio: 1.767145e-01	ci left: 1.315330e-04	ci right 1.573049e-04	k: 491	n:3410000
KALRN   3410000 perm   6294 sec   (542 perm/sec)   p_kst 1.439883e-04   p_cons 3.514683e-01   p_joint 1.439883e-04

Joint ci ratio: 1.763564e-01	ci left: 1.317074e-04	ci right 1.574556e-04	k: 493	n:3420000
Cons ci ratio: 2.879316e-03	ci left: 3.509685e-01	ci right 3.519808e-01	k: 1202043	n:3420000
KS ci ratio: 1.763564e-01	ci left: 1.317074e-04	ci right 1.574556e-04	k: 493	n:3420000
KALRN   3420000 perm   6328 sec   (540 perm/sec)   p_kst 1.441520e-04   p_cons 3.514746e-01   p_joint 1.441520e-04

Joint ci ratio: 1.756466e-01	ci left: 1.324382e-04	ci right 1.582140e-04	k: 497	n:3430000
Cons ci ratio: 2.875036e-03	ci left: 3.509819e-01	ci right 3.519927e-01	k: 1205601	n:3430000
KS ci ratio: 1.756466e-01	ci left: 1.324382e-04	ci right 1.582140e-04	k: 497	n:3430000
KALRN   3430000 perm   6362 sec   (539 perm/sec)   p_kst 1.448980e-04   p_cons 3.514872e-01   p_joint 1.448980e-04

Joint ci ratio: 1.756467e-01	ci left: 1.320532e-04	ci right 1.577541e-04	k: 497	n:3440000
Cons ci ratio: 2.870907e-03	ci left: 3.509742e-01	ci right 3.519836e-01	k: 1209087	n:3440000
KS ci ratio: 1.756467e-01	ci left: 1.320532e-04	ci right 1.577541e-04	k: 497	n:3440000
KALRN   3440000 perm   6395 sec   (538 perm/sec)   p_kst 1.444767e-04   p_cons 3.514788e-01   p_joint 1.444767e-04

Joint ci ratio: 1.756467e-01	ci left: 1.316704e-04	ci right 1.572968e-04	k: 497	n:3450000
Cons ci ratio: 2.866761e-03	ci left: 3.509721e-01	ci right 3.519800e-01	k: 1212592	n:3450000
KS ci ratio: 1.756467e-01	ci left: 1.316704e-04	ci right 1.572968e-04	k: 497	n:3450000
KALRN   3450000 perm   6429 sec   (537 perm/sec)   p_kst 1.440580e-04   p_cons 3.514759e-01   p_joint 1.440580e-04

Joint ci ratio: 1.752950e-01	ci left: 1.318425e-04	ci right 1.574456e-04	k: 499	n:3460000
Cons ci ratio: 2.862566e-03	ci left: 3.509807e-01	ci right 3.519871e-01	k: 1216134	n:3460000
KS ci ratio: 1.752950e-01	ci left: 1.318425e-04	ci right 1.574456e-04	k: 499	n:3460000
KALRN   3460000 perm   6462 sec   (535 perm/sec)   p_kst 1.442197e-04   p_cons 3.514838e-01   p_joint 1.442197e-04

Joint ci ratio: 1.747715e-01	ci left: 1.322893e-04	ci right 1.578943e-04	k: 502	n:3470000
Cons ci ratio: 2.858277e-03	ci left: 3.510071e-01	ci right 3.520121e-01	k: 1219738	n:3470000
KS ci ratio: 1.747715e-01	ci left: 1.322893e-04	ci right 1.578943e-04	k: 502	n:3470000
KALRN   3470000 perm   6496 sec   (534 perm/sec)   p_kst 1.446686e-04   p_cons 3.515095e-01   p_joint 1.446686e-04

Joint ci ratio: 1.742526e-01	ci left: 1.327335e-04	ci right 1.583402e-04	k: 505	n:3480000
Cons ci ratio: 2.854250e-03	ci left: 3.509946e-01	ci right 3.519982e-01	k: 1223207	n:3480000
KS ci ratio: 1.742526e-01	ci left: 1.327335e-04	ci right 1.583402e-04	k: 505	n:3480000
KALRN   3480000 perm   6530 sec   (533 perm/sec)   p_kst 1.451149e-04   p_cons 3.514963e-01   p_joint 1.451149e-04

Joint ci ratio: 1.740806e-01	ci left: 1.326273e-04	ci right 1.581856e-04	k: 506	n:3490000
Cons ci ratio: 2.850155e-03	ci left: 3.509959e-01	ci right 3.519980e-01	k: 1226724	n:3490000
KS ci ratio: 1.740806e-01	ci left: 1.326273e-04	ci right 1.581856e-04	k: 506	n:3490000
KALRN   3490000 perm   6563 sec   (532 perm/sec)   p_kst 1.449857e-04   p_cons 3.514968e-01   p_joint 1.449857e-04

Joint ci ratio: 1.739092e-01	ci left: 1.325216e-04	ci right 1.580317e-04	k: 507	n:3500000
Cons ci ratio: 2.846176e-03	ci left: 3.509812e-01	ci right 3.519819e-01	k: 1230185	n:3500000
KS ci ratio: 1.739092e-01	ci left: 1.325216e-04	ci right 1.580317e-04	k: 507	n:3500000
KALRN   3500000 perm   6596 sec   (531 perm/sec)   p_kst 1.448571e-04   p_cons 3.514814e-01   p_joint 1.448571e-04

Joint ci ratio: 1.737383e-01	ci left: 1.324166e-04	ci right 1.578788e-04	k: 508	n:3510000
Cons ci ratio: 2.842065e-03	ci left: 3.509905e-01	ci right 3.519898e-01	k: 1233730	n:3510000
KS ci ratio: 1.737383e-01	ci left: 1.324166e-04	ci right 1.578788e-04	k: 508	n:3510000
KALRN   3510000 perm   6630 sec   (529 perm/sec)   p_kst 1.447293e-04   p_cons 3.514900e-01   p_joint 1.447293e-04

Joint ci ratio: 1.733980e-01	ci left: 1.325839e-04	ci right 1.580231e-04	k: 510	n:3520000
Cons ci ratio: 2.838052e-03	ci left: 3.509870e-01	ci right 3.519848e-01	k: 1237230	n:3520000
KS ci ratio: 1.733980e-01	ci left: 1.325839e-04	ci right 1.580231e-04	k: 510	n:3520000
KALRN   3520000 perm   6664 sec   (528 perm/sec)   p_kst 1.448864e-04   p_cons 3.514858e-01   p_joint 1.448864e-04

Joint ci ratio: 1.732286e-01	ci left: 1.324793e-04	ci right 1.578710e-04	k: 511	n:3530000
Cons ci ratio: 2.834034e-03	ci left: 3.509869e-01	ci right 3.519833e-01	k: 1240742	n:3530000
KS ci ratio: 1.732286e-01	ci left: 1.324793e-04	ci right 1.578710e-04	k: 511	n:3530000
KALRN   3530000 perm   6697 sec   (527 perm/sec)   p_kst 1.447592e-04   p_cons 3.514850e-01   p_joint 1.447592e-04

Joint ci ratio: 1.732286e-01	ci left: 1.321050e-04	ci right 1.574251e-04	k: 511	n:3540000
Cons ci ratio: 2.829948e-03	ci left: 3.510007e-01	ci right 3.519956e-01	k: 1244303	n:3540000
KS ci ratio: 1.732286e-01	ci left: 1.321050e-04	ci right 1.574251e-04	k: 511	n:3540000
KALRN   3540000 perm   6731 sec   (526 perm/sec)   p_kst 1.443503e-04   p_cons 3.514980e-01   p_joint 1.443503e-04

Joint ci ratio: 1.730597e-01	ci left: 1.320024e-04	ci right 1.572755e-04	k: 512	n:3550000
Cons ci ratio: 2.825947e-03	ci left: 3.510033e-01	ci right 3.519969e-01	k: 1247825	n:3550000
KS ci ratio: 1.730597e-01	ci left: 1.320024e-04	ci right 1.572755e-04	k: 512	n:3550000
KALRN   3550000 perm   6765 sec   (525 perm/sec)   p_kst 1.442254e-04   p_cons 3.515000e-01   p_joint 1.442254e-04

Joint ci ratio: 1.728913e-01	ci left: 1.319003e-04	ci right 1.571268e-04	k: 513	n:3560000
Cons ci ratio: 2.821987e-03	ci left: 3.510021e-01	ci right 3.519942e-01	k: 1251333	n:3560000
KS ci ratio: 1.728913e-01	ci left: 1.319003e-04	ci right 1.571268e-04	k: 513	n:3560000
KALRN   3560000 perm   6799 sec   (524 perm/sec)   p_kst 1.441011e-04   p_cons 3.514980e-01   p_joint 1.441011e-04

Joint ci ratio: 1.727234e-01	ci left: 1.317989e-04	ci right 1.569788e-04	k: 514	n:3570000
Cons ci ratio: 2.817963e-03	ci left: 3.510140e-01	ci right 3.520048e-01	k: 1254888	n:3570000
KS ci ratio: 1.727234e-01	ci left: 1.317989e-04	ci right 1.569788e-04	k: 514	n:3570000
KALRN   3570000 perm   6833 sec   (522 perm/sec)   p_kst 1.439776e-04   p_cons 3.515092e-01   p_joint 1.439776e-04

Joint ci ratio: 1.725559e-01	ci left: 1.316980e-04	ci right 1.568317e-04	k: 515	n:3580000
Cons ci ratio: 2.814040e-03	ci left: 3.510121e-01	ci right 3.520015e-01	k: 1258394	n:3580000
KS ci ratio: 1.725559e-01	ci left: 1.316980e-04	ci right 1.568317e-04	k: 515	n:3580000
KALRN   3580000 perm   6868 sec   (521 perm/sec)   p_kst 1.438547e-04   p_cons 3.515067e-01   p_joint 1.438547e-04

Joint ci ratio: 1.718909e-01	ci left: 1.323973e-04	ci right 1.575571e-04	k: 519	n:3590000
Cons ci ratio: 2.810001e-03	ci left: 3.510317e-01	ci right 3.520198e-01	k: 1261977	n:3590000
KS ci ratio: 1.718909e-01	ci left: 1.323973e-04	ci right 1.575571e-04	k: 519	n:3590000
KALRN   3590000 perm   6903 sec   (520 perm/sec)   p_kst 1.445682e-04   p_cons 3.515256e-01   p_joint 1.445682e-04

Joint ci ratio: 1.717259e-01	ci left: 1.322954e-04	ci right 1.574091e-04	k: 520	n:3600000
Cons ci ratio: 2.806164e-03	ci left: 3.510212e-01	ci right 3.520079e-01	k: 1265452	n:3600000
KS ci ratio: 1.717259e-01	ci left: 1.322954e-04	ci right 1.574091e-04	k: 520	n:3600000
KALRN   3600000 perm   6938 sec   (519 perm/sec)   p_kst 1.444444e-04   p_cons 3.515144e-01   p_joint 1.444444e-04

Joint ci ratio: 1.717259e-01	ci left: 1.319289e-04	ci right 1.569731e-04	k: 520	n:3610000
Cons ci ratio: 2.802269e-03	ci left: 3.510230e-01	ci right 3.520083e-01	k: 1268971	n:3610000
KS ci ratio: 1.717259e-01	ci left: 1.319289e-04	ci right 1.569731e-04	k: 520	n:3610000
KALRN   3610000 perm   6973 sec   (518 perm/sec)   p_kst 1.440443e-04   p_cons 3.515155e-01   p_joint 1.440443e-04

Joint ci ratio: 1.713972e-01	ci left: 1.320932e-04	ci right 1.571156e-04	k: 522	n:3620000
Cons ci ratio: 2.798397e-03	ci left: 3.510233e-01	ci right 3.520073e-01	k: 1272485	n:3620000
KS ci ratio: 1.713972e-01	ci left: 1.320932e-04	ci right 1.571156e-04	k: 522	n:3620000
KALRN   3620000 perm   7008 sec   (517 perm/sec)   p_kst 1.441989e-04   p_cons 3.515152e-01   p_joint 1.441989e-04

Joint ci ratio: 1.713973e-01	ci left: 1.317293e-04	ci right 1.566828e-04	k: 522	n:3630000
Cons ci ratio: 2.794523e-03	ci left: 3.510267e-01	ci right 3.520093e-01	k: 1276010	n:3630000
KS ci ratio: 1.713973e-01	ci left: 1.317293e-04	ci right 1.566828e-04	k: 522	n:3630000
KALRN   3630000 perm   7042 sec   (515 perm/sec)   p_kst 1.438017e-04   p_cons 3.515179e-01   p_joint 1.438017e-04

Joint ci ratio: 1.709077e-01	ci left: 1.321563e-04	ci right 1.571118e-04	k: 525	n:3640000
Cons ci ratio: 2.790617e-03	ci left: 3.510381e-01	ci right 3.520193e-01	k: 1279564	n:3640000
KS ci ratio: 1.709077e-01	ci left: 1.321563e-04	ci right 1.571118e-04	k: 525	n:3640000
KALRN   3640000 perm   7077 sec   (514 perm/sec)   p_kst 1.442308e-04   p_cons 3.515286e-01   p_joint 1.442308e-04

Joint ci ratio: 1.709078e-01	ci left: 1.317942e-04	ci right 1.566814e-04	k: 525	n:3650000
Cons ci ratio: 2.786780e-03	ci left: 3.510406e-01	ci right 3.520205e-01	k: 1283086	n:3650000
KS ci ratio: 1.709078e-01	ci left: 1.317942e-04	ci right 1.566814e-04	k: 525	n:3650000
KALRN   3650000 perm   7112 sec   (513 perm/sec)   p_kst 1.438356e-04   p_cons 3.515304e-01   p_joint 1.438356e-04

Joint ci ratio: 1.704224e-01	ci left: 1.322188e-04	ci right 1.571079e-04	k: 528	n:3660000
Cons ci ratio: 2.782953e-03	ci left: 3.510442e-01	ci right 3.520227e-01	k: 1286612	n:3660000
KS ci ratio: 1.704224e-01	ci left: 1.322188e-04	ci right 1.571079e-04	k: 528	n:3660000
KALRN   3660000 perm   7147 sec   (512 perm/sec)   p_kst 1.442623e-04   p_cons 3.515333e-01   p_joint 1.442623e-04

Joint ci ratio: 1.699412e-01	ci left: 1.326412e-04	ci right 1.575321e-04	k: 531	n:3670000
Cons ci ratio: 2.779259e-03	ci left: 3.510284e-01	ci right 3.520056e-01	k: 1290067	n:3670000
KS ci ratio: 1.699412e-01	ci left: 1.326412e-04	ci right 1.575321e-04	k: 531	n:3670000
KALRN   3670000 perm   7182 sec   (511 perm/sec)   p_kst 1.446866e-04   p_cons 3.515169e-01   p_joint 1.446866e-04

Joint ci ratio: 1.697817e-01	ci left: 1.325409e-04	ci right 1.573873e-04	k: 532	n:3680000
Cons ci ratio: 2.775519e-03	ci left: 3.510228e-01	ci right 3.519987e-01	k: 1293559	n:3680000
KS ci ratio: 1.697817e-01	ci left: 1.325409e-04	ci right 1.573873e-04	k: 532	n:3680000
KALRN   3680000 perm   7217 sec   (510 perm/sec)   p_kst 1.445652e-04   p_cons 3.515106e-01   p_joint 1.445652e-04

Joint ci ratio: 1.696227e-01	ci left: 1.324412e-04	ci right 1.572432e-04	k: 533	n:3690000
Cons ci ratio: 2.771773e-03	ci left: 3.510204e-01	ci right 3.519950e-01	k: 1297063	n:3690000
KS ci ratio: 1.696227e-01	ci left: 1.324412e-04	ci right 1.572432e-04	k: 533	n:3690000
KALRN   3690000 perm   7252 sec   (509 perm/sec)   p_kst 1.444444e-04   p_cons 3.515076e-01   p_joint 1.444444e-04

Joint ci ratio: 1.689909e-01	ci left: 1.331185e-04	ci right 1.579451e-04	k: 537	n:3700000
Cons ci ratio: 2.768016e-03	ci left: 3.510227e-01	ci right 3.519959e-01	k: 1300584	n:3700000
KS ci ratio: 1.689909e-01	ci left: 1.331185e-04	ci right 1.579451e-04	k: 537	n:3700000
KALRN   3700000 perm   7287 sec   (508 perm/sec)   p_kst 1.451351e-04   p_cons 3.515092e-01   p_joint 1.451351e-04

Joint ci ratio: 1.689909e-01	ci left: 1.327597e-04	ci right 1.575194e-04	k: 537	n:3710000
Cons ci ratio: 2.764276e-03	ci left: 3.510244e-01	ci right 3.519963e-01	k: 1304103	n:3710000
KS ci ratio: 1.689909e-01	ci left: 1.327597e-04	ci right 1.575194e-04	k: 537	n:3710000
KALRN   3710000 perm   7323 sec   (507 perm/sec)   p_kst 1.447439e-04   p_cons 3.515102e-01   p_joint 1.447439e-04

Joint ci ratio: 1.689910e-01	ci left: 1.324028e-04	ci right 1.570959e-04	k: 537	n:3720000
Cons ci ratio: 2.760715e-03	ci left: 3.509992e-01	ci right 3.519698e-01	k: 1307522	n:3720000
KS ci ratio: 1.689910e-01	ci left: 1.324028e-04	ci right 1.570959e-04	k: 537	n:3720000
KALRN   3720000 perm   7359 sec   (506 perm/sec)   p_kst 1.443548e-04   p_cons 3.514844e-01   p_joint 1.443548e-04

Joint ci ratio: 1.688341e-01	ci left: 1.323046e-04	ci right 1.569542e-04	k: 538	n:3730000
Cons ci ratio: 2.757045e-03	ci left: 3.509943e-01	ci right 3.519636e-01	k: 1311016	n:3730000
KS ci ratio: 1.688341e-01	ci left: 1.323046e-04	ci right 1.569542e-04	k: 538	n:3730000
KALRN   3730000 perm   7394 sec   (504 perm/sec)   p_kst 1.442359e-04   p_cons 3.514788e-01   p_joint 1.442359e-04

Joint ci ratio: 1.686777e-01	ci left: 1.322070e-04	ci right 1.568132e-04	k: 539	n:3740000
Cons ci ratio: 2.753298e-03	ci left: 3.510046e-01	ci right 3.519726e-01	k: 1314567	n:3740000
KS ci ratio: 1.686777e-01	ci left: 1.322070e-04	ci right 1.568132e-04	k: 539	n:3740000
KALRN   3740000 perm   7429 sec   (503 perm/sec)   p_kst 1.441176e-04   p_cons 3.514885e-01   p_joint 1.441176e-04

Joint ci ratio: 1.682111e-01	ci left: 1.326207e-04	ci right 1.572287e-04	k: 542	n:3750000
Cons ci ratio: 2.749535e-03	ci left: 3.510202e-01	ci right 3.519869e-01	k: 1318138	n:3750000
KS ci ratio: 1.682111e-01	ci left: 1.326207e-04	ci right 1.572287e-04	k: 542	n:3750000
KALRN   3750000 perm   7466 sec   (502 perm/sec)   p_kst 1.445333e-04   p_cons 3.515035e-01   p_joint 1.445333e-04

Joint ci ratio: 1.679022e-01	ci left: 1.327775e-04	ci right 1.573648e-04	k: 544	n:3760000
Cons ci ratio: 2.745980e-03	ci left: 3.510036e-01	ci right 3.519690e-01	k: 1321588	n:3760000
KS ci ratio: 1.679022e-01	ci left: 1.327775e-04	ci right 1.573648e-04	k: 544	n:3760000
KALRN   3760000 perm   7502 sec   (501 perm/sec)   p_kst 1.446809e-04   p_cons 3.514862e-01   p_joint 1.446809e-04

Joint ci ratio: 1.677483e-01	ci left: 1.326794e-04	ci right 1.572238e-04	k: 545	n:3770000
Cons ci ratio: 2.742302e-03	ci left: 3.510098e-01	ci right 3.519740e-01	k: 1325124	n:3770000
KS ci ratio: 1.677483e-01	ci left: 1.326794e-04	ci right 1.572238e-04	k: 545	n:3770000
KALRN   3770000 perm   7538 sec   (500 perm/sec)   p_kst 1.445623e-04   p_cons 3.514918e-01   p_joint 1.445623e-04

Joint ci ratio: 1.677484e-01	ci left: 1.323284e-04	ci right 1.568079e-04	k: 545	n:3780000
Cons ci ratio: 2.738850e-03	ci left: 3.509809e-01	ci right 3.519437e-01	k: 1328527	n:3780000
KS ci ratio: 1.677484e-01	ci left: 1.323284e-04	ci right 1.568079e-04	k: 545	n:3780000
KALRN   3780000 perm   7574 sec   (499 perm/sec)   p_kst 1.441799e-04   p_cons 3.514622e-01   p_joint 1.441799e-04

Joint ci ratio: 1.672894e-01	ci left: 1.327377e-04	ci right 1.572188e-04	k: 548	n:3790000
Cons ci ratio: 2.735308e-03	ci left: 3.509692e-01	ci right 3.519308e-01	k: 1331995	n:3790000
KS ci ratio: 1.672894e-01	ci left: 1.327377e-04	ci right 1.572188e-04	k: 548	n:3790000
KALRN   3790000 perm   7611 sec   (498 perm/sec)   p_kst 1.445910e-04   p_cons 3.514499e-01   p_joint 1.445910e-04

Joint ci ratio: 1.671372e-01	ci left: 1.326405e-04	ci right 1.570793e-04	k: 549	n:3800000
Cons ci ratio: 2.731817e-03	ci left: 3.509515e-01	ci right 3.519118e-01	k: 1335440	n:3800000
KS ci ratio: 1.671372e-01	ci left: 1.326405e-04	ci right 1.570793e-04	k: 549	n:3800000
KALRN   3800000 perm   7646 sec   (497 perm/sec)   p_kst 1.444737e-04   p_cons 3.514316e-01   p_joint 1.444737e-04

Joint ci ratio: 1.669855e-01	ci left: 1.325438e-04	ci right 1.569404e-04	k: 550	n:3810000
Cons ci ratio: 2.728237e-03	ci left: 3.509508e-01	ci right 3.519098e-01	k: 1338949	n:3810000
KS ci ratio: 1.669855e-01	ci left: 1.325438e-04	ci right 1.569404e-04	k: 550	n:3810000
KALRN   3810000 perm   7683 sec   (496 perm/sec)   p_kst 1.443570e-04   p_cons 3.514302e-01   p_joint 1.443570e-04

Joint ci ratio: 1.669855e-01	ci left: 1.321969e-04	ci right 1.565296e-04	k: 550	n:3820000
Cons ci ratio: 2.724679e-03	ci left: 3.509490e-01	ci right 3.519067e-01	k: 1342454	n:3820000
KS ci ratio: 1.669855e-01	ci left: 1.321969e-04	ci right 1.565296e-04	k: 550	n:3820000
KALRN   3820000 perm   7719 sec   (495 perm/sec)   p_kst 1.439791e-04   p_cons 3.514277e-01   p_joint 1.439791e-04

Joint ci ratio: 1.666833e-01	ci left: 1.323521e-04	ci right 1.566649e-04	k: 552	n:3830000
Cons ci ratio: 2.721110e-03	ci left: 3.509511e-01	ci right 3.519076e-01	k: 1345974	n:3830000
KS ci ratio: 1.666833e-01	ci left: 1.323521e-04	ci right 1.566649e-04	k: 552	n:3830000
KALRN   3830000 perm   7755 sec   (494 perm/sec)   p_kst 1.441253e-04   p_cons 3.514292e-01   p_joint 1.441253e-04

Joint ci ratio: 1.665328e-01	ci left: 1.322570e-04	ci right 1.565281e-04	k: 553	n:3840000
Cons ci ratio: 2.717632e-03	ci left: 3.509404e-01	ci right 3.518957e-01	k: 1349445	n:3840000
KS ci ratio: 1.665328e-01	ci left: 1.322570e-04	ci right 1.565281e-04	k: 553	n:3840000
KALRN   3840000 perm   7792 sec   (493 perm/sec)   p_kst 1.440104e-04   p_cons 3.514180e-01   p_joint 1.440104e-04

Joint ci ratio: 1.662330e-01	ci left: 1.324113e-04	ci right 1.566627e-04	k: 555	n:3850000
Cons ci ratio: 2.714062e-03	ci left: 3.509475e-01	ci right 3.519015e-01	k: 1352984	n:3850000
KS ci ratio: 1.662330e-01	ci left: 1.324113e-04	ci right 1.566627e-04	k: 555	n:3850000
KALRN   3850000 perm   7829 sec   (492 perm/sec)   p_kst 1.441558e-04   p_cons 3.514244e-01   p_joint 1.441558e-04

Joint ci ratio: 1.660837e-01	ci left: 1.323166e-04	ci right 1.565266e-04	k: 556	n:3860000
Cons ci ratio: 2.710506e-03	ci left: 3.509545e-01	ci right 3.519073e-01	k: 1356523	n:3860000
KS ci ratio: 1.660837e-01	ci left: 1.323166e-04	ci right 1.565266e-04	k: 556	n:3860000
KALRN   3860000 perm   7865 sec   (491 perm/sec)   p_kst 1.440415e-04   p_cons 3.514308e-01   p_joint 1.440415e-04

Joint ci ratio: 1.657863e-01	ci left: 1.324700e-04	ci right 1.566604e-04	k: 558	n:3870000
Cons ci ratio: 2.706895e-03	ci left: 3.509732e-01	ci right 3.519247e-01	k: 1360107	n:3870000
KS ci ratio: 1.657863e-01	ci left: 1.324700e-04	ci right 1.566604e-04	k: 558	n:3870000
KALRN   3870000 perm   7902 sec   (490 perm/sec)   p_kst 1.441860e-04   p_cons 3.514488e-01   p_joint 1.441860e-04

Joint ci ratio: 1.654905e-01	ci left: 1.326227e-04	ci right 1.567935e-04	k: 560	n:3880000
Cons ci ratio: 2.703401e-03	ci left: 3.509744e-01	ci right 3.519248e-01	k: 1363624	n:3880000
KS ci ratio: 1.654905e-01	ci left: 1.326227e-04	ci right 1.567935e-04	k: 560	n:3880000
KALRN   3880000 perm   7939 sec   (489 perm/sec)   p_kst 1.443299e-04   p_cons 3.514495e-01   p_joint 1.443299e-04

Joint ci ratio: 1.653433e-01	ci left: 1.325282e-04	ci right 1.566581e-04	k: 561	n:3890000
Cons ci ratio: 2.699885e-03	ci left: 3.509816e-01	ci right 3.519307e-01	k: 1367164	n:3890000
KS ci ratio: 1.653433e-01	ci left: 1.325282e-04	ci right 1.566581e-04	k: 561	n:3890000
KALRN   3890000 perm   7975 sec   (488 perm/sec)   p_kst 1.442159e-04   p_cons 3.514560e-01   p_joint 1.442159e-04

Joint ci ratio: 1.649037e-01	ci left: 1.329258e-04	ci right 1.570574e-04	k: 564	n:3900000
Cons ci ratio: 2.696461e-03	ci left: 3.509754e-01	ci right 3.519233e-01	k: 1370652	n:3900000
KS ci ratio: 1.649037e-01	ci left: 1.329258e-04	ci right 1.570574e-04	k: 564	n:3900000
KALRN   3900000 perm   8012 sec   (487 perm/sec)   p_kst 1.446154e-04   p_cons 3.514492e-01   p_joint 1.446154e-04

Joint ci ratio: 1.649037e-01	ci left: 1.325858e-04	ci right 1.566557e-04	k: 564	n:3910000
Cons ci ratio: 2.693048e-03	ci left: 3.509697e-01	ci right 3.519164e-01	k: 1374142	n:3910000
KS ci ratio: 1.649037e-01	ci left: 1.325858e-04	ci right 1.566557e-04	k: 564	n:3910000
KALRN   3910000 perm   8050 sec   (486 perm/sec)   p_kst 1.442455e-04   p_cons 3.514430e-01   p_joint 1.442455e-04

Joint ci ratio: 1.647580e-01	ci left: 1.324922e-04	ci right 1.565217e-04	k: 565	n:3920000
Cons ci ratio: 2.689603e-03	ci left: 3.509718e-01	ci right 3.519172e-01	k: 1377662	n:3920000
KS ci ratio: 1.647580e-01	ci left: 1.324922e-04	ci right 1.565217e-04	k: 565	n:3920000
KALRN   3920000 perm   8087 sec   (485 perm/sec)   p_kst 1.441327e-04   p_cons 3.514444e-01   p_joint 1.441327e-04

Joint ci ratio: 1.646126e-01	ci left: 1.323990e-04	ci right 1.563883e-04	k: 566	n:3930000
Cons ci ratio: 2.686083e-03	ci left: 3.509885e-01	ci right 3.519328e-01	k: 1381240	n:3930000
KS ci ratio: 1.646126e-01	ci left: 1.323990e-04	ci right 1.563883e-04	k: 566	n:3930000
KALRN   3930000 perm   8124 sec   (484 perm/sec)   p_kst 1.440204e-04   p_cons 3.514606e-01   p_joint 1.440204e-04

Joint ci ratio: 1.644677e-01	ci left: 1.323063e-04	ci right 1.562557e-04	k: 567	n:3940000
Cons ci ratio: 2.682530e-03	ci left: 3.510133e-01	ci right 3.519564e-01	k: 1384850	n:3940000
KS ci ratio: 1.644677e-01	ci left: 1.323063e-04	ci right 1.562557e-04	k: 567	n:3940000
KALRN   3940000 perm   8162 sec   (483 perm/sec)   p_kst 1.439086e-04   p_cons 3.514848e-01   p_joint 1.439086e-04

Joint ci ratio: 1.643231e-01	ci left: 1.322141e-04	ci right 1.561237e-04	k: 568	n:3950000
Cons ci ratio: 2.679188e-03	ci left: 3.510043e-01	ci right 3.519463e-01	k: 1388327	n:3950000
KS ci ratio: 1.643231e-01	ci left: 1.322141e-04	ci right 1.561237e-04	k: 568	n:3950000
KALRN   3950000 perm   8199 sec   (482 perm/sec)   p_kst 1.437975e-04   p_cons 3.514752e-01   p_joint 1.437975e-04

Joint ci ratio: 1.638916e-01	ci left: 1.326067e-04	ci right 1.565181e-04	k: 571	n:3960000
Cons ci ratio: 2.675767e-03	ci left: 3.510111e-01	ci right 3.519518e-01	k: 1391866	n:3960000
KS ci ratio: 1.638916e-01	ci left: 1.326067e-04	ci right 1.565181e-04	k: 571	n:3960000
KALRN   3960000 perm   8237 sec   (481 perm/sec)   p_kst 1.441919e-04   p_cons 3.514813e-01   p_joint 1.441919e-04

Joint ci ratio: 1.633215e-01	ci left: 1.332390e-04	ci right 1.571726e-04	k: 575	n:3970000
Cons ci ratio: 2.672445e-03	ci left: 3.510031e-01	ci right 3.519427e-01	k: 1395347	n:3970000
KS ci ratio: 1.633215e-01	ci left: 1.332390e-04	ci right 1.571726e-04	k: 575	n:3970000
KALRN   3970000 perm   8274 sec   (480 perm/sec)   p_kst 1.448363e-04   p_cons 3.514728e-01   p_joint 1.448363e-04

Joint ci ratio: 1.627573e-01	ci left: 1.338683e-04	ci right 1.578237e-04	k: 579	n:3980000
Cons ci ratio: 2.669024e-03	ci left: 3.510143e-01	ci right 3.519527e-01	k: 1398904	n:3980000
KS ci ratio: 1.627573e-01	ci left: 1.338683e-04	ci right 1.578237e-04	k: 579	n:3980000
KALRN   3980000 perm   8312 sec   (479 perm/sec)   p_kst 1.454774e-04   p_cons 3.514834e-01   p_joint 1.454774e-04

Joint ci ratio: 1.627573e-01	ci left: 1.335328e-04	ci right 1.574281e-04	k: 579	n:3990000
Cons ci ratio: 2.665715e-03	ci left: 3.510085e-01	ci right 3.519456e-01	k: 1402393	n:3990000
KS ci ratio: 1.627573e-01	ci left: 1.335328e-04	ci right 1.574281e-04	k: 579	n:3990000
KALRN   3990000 perm   8349 sec   (478 perm/sec)   p_kst 1.451128e-04   p_cons 3.514769e-01   p_joint 1.451128e-04

Joint ci ratio: 1.626172e-01	ci left: 1.334388e-04	ci right 1.572947e-04	k: 580	n:4000000
Cons ci ratio: 2.662496e-03	ci left: 3.509894e-01	ci right 3.519254e-01	k: 1405829	n:4000000
KS ci ratio: 1.626172e-01	ci left: 1.334388e-04	ci right 1.572947e-04	k: 580	n:4000000
KALRN   4000000 perm   8388 sec   (477 perm/sec)   p_kst 1.450000e-04   p_cons 3.514572e-01   p_joint 1.450000e-04

Joint ci ratio: 1.621989e-01	ci left: 1.338237e-04	ci right 1.576810e-04	k: 583	n:4010000
Cons ci ratio: 2.659209e-03	ci left: 3.509838e-01	ci right 3.519186e-01	k: 1409319	n:4010000
KS ci ratio: 1.621989e-01	ci left: 1.338237e-04	ci right 1.576810e-04	k: 583	n:4010000
KALRN   4010000 perm   8428 sec   (476 perm/sec)   p_kst 1.453865e-04   p_cons 3.514511e-01   p_joint 1.453865e-04

Joint ci ratio: 1.621990e-01	ci left: 1.334908e-04	ci right 1.572887e-04	k: 583	n:4020000
Cons ci ratio: 2.655940e-03	ci left: 3.509776e-01	ci right 3.519112e-01	k: 1412806	n:4020000
KS ci ratio: 1.621990e-01	ci left: 1.334908e-04	ci right 1.572887e-04	k: 583	n:4020000
KALRN   4020000 perm   8466 sec   (475 perm/sec)   p_kst 1.450249e-04   p_cons 3.514443e-01   p_joint 1.450249e-04

Joint ci ratio: 1.620603e-01	ci left: 1.333976e-04	ci right 1.571566e-04	k: 584	n:4030000
Cons ci ratio: 2.652598e-03	ci left: 3.509857e-01	ci right 3.519182e-01	k: 1416351	n:4030000
KS ci ratio: 1.620603e-01	ci left: 1.333976e-04	ci right 1.571566e-04	k: 584	n:4030000
KALRN   4030000 perm   8504 sec   (474 perm/sec)   p_kst 1.449132e-04   p_cons 3.514519e-01   p_joint 1.449132e-04

Joint ci ratio: 1.617839e-01	ci left: 1.335424e-04	ci right 1.572827e-04	k: 586	n:4040000
Cons ci ratio: 2.649352e-03	ci left: 3.509797e-01	ci right 3.519111e-01	k: 1419839	n:4040000
KS ci ratio: 1.617839e-01	ci left: 1.335424e-04	ci right 1.572827e-04	k: 586	n:4040000
KALRN   4040000 perm   8543 sec   (473 perm/sec)   p_kst 1.450495e-04   p_cons 3.514453e-01   p_joint 1.450495e-04

Joint ci ratio: 1.615090e-01	ci left: 1.336866e-04	ci right 1.574082e-04	k: 588	n:4050000
Cons ci ratio: 2.646125e-03	ci left: 3.509723e-01	ci right 3.519025e-01	k: 1423321	n:4050000
KS ci ratio: 1.615090e-01	ci left: 1.336866e-04	ci right 1.574082e-04	k: 588	n:4050000
KALRN   4050000 perm   8581 sec   (472 perm/sec)   p_kst 1.451852e-04   p_cons 3.514373e-01   p_joint 1.451852e-04

Joint ci ratio: 1.615090e-01	ci left: 1.333573e-04	ci right 1.570205e-04	k: 588	n:4060000
Cons ci ratio: 2.642876e-03	ci left: 3.509708e-01	ci right 3.518998e-01	k: 1426827	n:4060000
KS ci ratio: 1.615090e-01	ci left: 1.333573e-04	ci right 1.570205e-04	k: 588	n:4060000
KALRN   4060000 perm   8620 sec   (471 perm/sec)   p_kst 1.448276e-04   p_cons 3.514352e-01   p_joint 1.448276e-04

Joint ci ratio: 1.613721e-01	ci left: 1.332654e-04	ci right 1.568903e-04	k: 589	n:4070000
Cons ci ratio: 2.639605e-03	ci left: 3.509752e-01	ci right 3.519031e-01	k: 1430357	n:4070000
KS ci ratio: 1.613721e-01	ci left: 1.332654e-04	ci right 1.568903e-04	k: 589	n:4070000
KALRN   4070000 perm   8658 sec   (470 perm/sec)   p_kst 1.447174e-04   p_cons 3.514391e-01   p_joint 1.447174e-04

Joint ci ratio: 1.613722e-01	ci left: 1.329388e-04	ci right 1.565057e-04	k: 589	n:4080000
Cons ci ratio: 2.636294e-03	ci left: 3.509887e-01	ci right 3.519154e-01	k: 1433924	n:4080000
KS ci ratio: 1.613722e-01	ci left: 1.329388e-04	ci right 1.565057e-04	k: 589	n:4080000
KALRN   4080000 perm   8697 sec   (469 perm/sec)   p_kst 1.443627e-04   p_cons 3.514520e-01   p_joint 1.443627e-04

Joint ci ratio: 1.613722e-01	ci left: 1.326137e-04	ci right 1.561231e-04	k: 589	n:4090000
Cons ci ratio: 2.633220e-03	ci left: 3.509632e-01	ci right 3.518888e-01	k: 1437332	n:4090000
KS ci ratio: 1.613722e-01	ci left: 1.326137e-04	ci right 1.561231e-04	k: 589	n:4090000
KALRN   4090000 perm   8736 sec   (468 perm/sec)   p_kst 1.440098e-04   p_cons 3.514259e-01   p_joint 1.440098e-04

Joint ci ratio: 1.613722e-01	ci left: 1.322903e-04	ci right 1.557423e-04	k: 589	n:4100000
Cons ci ratio: 2.629945e-03	ci left: 3.509744e-01	ci right 3.518989e-01	k: 1440890	n:4100000
KS ci ratio: 1.613722e-01	ci left: 1.322903e-04	ci right 1.557423e-04	k: 589	n:4100000
KALRN   4100000 perm   8774 sec   (467 perm/sec)   p_kst 1.436585e-04   p_cons 3.514366e-01   p_joint 1.436585e-04

Joint ci ratio: 1.610994e-01	ci left: 1.324354e-04	ci right 1.558696e-04	k: 591	n:4110000
Cons ci ratio: 2.626772e-03	ci left: 3.509701e-01	ci right 3.518934e-01	k: 1444384	n:4110000
KS ci ratio: 1.610994e-01	ci left: 1.324354e-04	ci right 1.558696e-04	k: 591	n:4110000
KALRN   4110000 perm   8813 sec   (466 perm/sec)   p_kst 1.437956e-04   p_cons 3.514316e-01   p_joint 1.437956e-04

Joint ci ratio: 1.610994e-01	ci left: 1.321139e-04	ci right 1.554913e-04	k: 591	n:4120000
Cons ci ratio: 2.623650e-03	ci left: 3.509589e-01	ci right 3.518811e-01	k: 1447850	n:4120000
KS ci ratio: 1.610994e-01	ci left: 1.321139e-04	ci right 1.554913e-04	k: 591	n:4120000
KALRN   4120000 perm   8853 sec   (465 perm/sec)   p_kst 1.434466e-04   p_cons 3.514199e-01   p_joint 1.434466e-04

Joint ci ratio: 1.610994e-01	ci left: 1.317941e-04	ci right 1.551148e-04	k: 591	n:4130000
Cons ci ratio: 2.620440e-03	ci left: 3.509650e-01	ci right 3.518861e-01	k: 1451387	n:4130000
KS ci ratio: 1.610994e-01	ci left: 1.317941e-04	ci right 1.551148e-04	k: 591	n:4130000
KALRN   4130000 perm   8892 sec   (464 perm/sec)   p_kst 1.430993e-04   p_cons 3.514254e-01   p_joint 1.430993e-04

Joint ci ratio: 1.608280e-01	ci left: 1.319393e-04	ci right 1.552427e-04	k: 593	n:4140000
Cons ci ratio: 2.617251e-03	ci left: 3.509693e-01	ci right 3.518893e-01	k: 1454917	n:4140000
KS ci ratio: 1.608280e-01	ci left: 1.319393e-04	ci right 1.552427e-04	k: 593	n:4140000
KALRN   4140000 perm   8931 sec   (464 perm/sec)   p_kst 1.432367e-04   p_cons 3.514292e-01   p_joint 1.432367e-04

Joint ci ratio: 1.605579e-01	ci left: 1.320840e-04	ci right 1.553699e-04	k: 595	n:4150000
Cons ci ratio: 2.613973e-03	ci left: 3.509913e-01	ci right 3.519102e-01	k: 1458520	n:4150000
KS ci ratio: 1.605579e-01	ci left: 1.320840e-04	ci right 1.553699e-04	k: 595	n:4150000
KALRN   4150000 perm   8970 sec   (463 perm/sec)   p_kst 1.433735e-04   p_cons 3.514506e-01   p_joint 1.433735e-04

Joint ci ratio: 1.605579e-01	ci left: 1.317665e-04	ci right 1.549964e-04	k: 595	n:4160000
Cons ci ratio: 2.610766e-03	ci left: 3.510030e-01	ci right 3.519208e-01	k: 1462081	n:4160000
KS ci ratio: 1.605579e-01	ci left: 1.317665e-04	ci right 1.549964e-04	k: 595	n:4160000
KALRN   4160000 perm   9009 sec   (462 perm/sec)   p_kst 1.430288e-04   p_cons 3.514618e-01   p_joint 1.430288e-04

Joint ci ratio: 1.605580e-01	ci left: 1.314505e-04	ci right 1.546247e-04	k: 595	n:4170000
Cons ci ratio: 2.607508e-03	ci left: 3.510254e-01	ci right 3.519422e-01	k: 1465687	n:4170000
KS ci ratio: 1.605580e-01	ci left: 1.314505e-04	ci right 1.546247e-04	k: 595	n:4170000
KALRN   4170000 perm   9049 sec   (461 perm/sec)   p_kst 1.426859e-04   p_cons 3.514837e-01   p_joint 1.426859e-04

Joint ci ratio: 1.602892e-01	ci left: 1.315953e-04	ci right 1.547524e-04	k: 597	n:4180000
Cons ci ratio: 2.604376e-03	ci left: 3.510279e-01	ci right 3.519436e-01	k: 1469210	n:4180000
KS ci ratio: 1.602892e-01	ci left: 1.315953e-04	ci right 1.547524e-04	k: 597	n:4180000
KALRN   4180000 perm   9087 sec   (460 perm/sec)   p_kst 1.428230e-04   p_cons 3.514856e-01   p_joint 1.428230e-04

Joint ci ratio: 1.601554e-01	ci left: 1.315103e-04	ci right 1.546313e-04	k: 598	n:4190000
Cons ci ratio: 2.601150e-03	ci left: 3.510488e-01	ci right 3.519633e-01	k: 1472810	n:4190000
KS ci ratio: 1.601554e-01	ci left: 1.315103e-04	ci right 1.546313e-04	k: 598	n:4190000
KALRN   4190000 perm   9126 sec   (459 perm/sec)   p_kst 1.427208e-04   p_cons 3.515060e-01   p_joint 1.427208e-04

Joint ci ratio: 1.598887e-01	ci left: 1.316543e-04	ci right 1.547584e-04	k: 600	n:4200000
Cons ci ratio: 2.598037e-03	ci left: 3.510519e-01	ci right 3.519654e-01	k: 1476336	n:4200000
KS ci ratio: 1.598887e-01	ci left: 1.316543e-04	ci right 1.547584e-04	k: 600	n:4200000
KALRN   4200000 perm   9166 sec   (458 perm/sec)   p_kst 1.428571e-04   p_cons 3.515086e-01   p_joint 1.428571e-04

Joint ci ratio: 1.596233e-01	ci left: 1.317976e-04	ci right 1.548848e-04	k: 602	n:4210000
Cons ci ratio: 2.594954e-03	ci left: 3.510518e-01	ci right 3.519641e-01	k: 1479848	n:4210000
KS ci ratio: 1.596233e-01	ci left: 1.317976e-04	ci right 1.548848e-04	k: 602	n:4210000
KALRN   4210000 perm   9205 sec   (457 perm/sec)   p_kst 1.429929e-04   p_cons 3.515078e-01   p_joint 1.429929e-04

Joint ci ratio: 1.596233e-01	ci left: 1.314853e-04	ci right 1.545178e-04	k: 602	n:4220000
Cons ci ratio: 2.591840e-03	ci left: 3.510589e-01	ci right 3.519702e-01	k: 1483391	n:4220000
KS ci ratio: 1.596233e-01	ci left: 1.314853e-04	ci right 1.545178e-04	k: 602	n:4220000
KALRN   4220000 perm   9245 sec   (456 perm/sec)   p_kst 1.426540e-04   p_cons 3.515145e-01   p_joint 1.426540e-04

Joint ci ratio: 1.596233e-01	ci left: 1.311745e-04	ci right 1.541525e-04	k: 602	n:4230000
Cons ci ratio: 2.588810e-03	ci left: 3.510533e-01	ci right 3.519635e-01	k: 1486880	n:4230000
KS ci ratio: 1.596233e-01	ci left: 1.311745e-04	ci right 1.541525e-04	k: 602	n:4230000
KALRN   4230000 perm   9285 sec   (456 perm/sec)   p_kst 1.423168e-04   p_cons 3.515083e-01   p_joint 1.423168e-04

Joint ci ratio: 1.592277e-01	ci left: 1.315444e-04	ci right 1.545247e-04	k: 605	n:4240000
Cons ci ratio: 2.585740e-03	ci left: 3.510564e-01	ci right 3.519655e-01	k: 1490406	n:4240000
KS ci ratio: 1.592277e-01	ci left: 1.315444e-04	ci right 1.545247e-04	k: 605	n:4240000
KALRN   4240000 perm   9325 sec   (455 perm/sec)   p_kst 1.426887e-04   p_cons 3.515108e-01   p_joint 1.426887e-04

Joint ci ratio: 1.592277e-01	ci left: 1.312349e-04	ci right 1.541611e-04	k: 605	n:4250000
Cons ci ratio: 2.582739e-03	ci left: 3.510494e-01	ci right 3.519574e-01	k: 1493889	n:4250000
KS ci ratio: 1.592277e-01	ci left: 1.312349e-04	ci right 1.541611e-04	k: 605	n:4250000
KALRN   4250000 perm   9364 sec   (454 perm/sec)   p_kst 1.423529e-04   p_cons 3.515033e-01   p_joint 1.423529e-04

Joint ci ratio: 1.588350e-01	ci left: 1.316030e-04	ci right 1.545315e-04	k: 608	n:4260000
Cons ci ratio: 2.579696e-03	ci left: 3.510518e-01	ci right 3.519588e-01	k: 1497412	n:4260000
KS ci ratio: 1.588350e-01	ci left: 1.316030e-04	ci right 1.545315e-04	k: 608	n:4260000
KALRN   4260000 perm   9404 sec   (453 perm/sec)   p_kst 1.427230e-04   p_cons 3.515052e-01   p_joint 1.427230e-04

Joint ci ratio: 1.587048e-01	ci left: 1.315197e-04	ci right 1.544131e-04	k: 609	n:4270000
Cons ci ratio: 2.576619e-03	ci left: 3.510619e-01	ci right 3.519678e-01	k: 1500968	n:4270000
KS ci ratio: 1.587048e-01	ci left: 1.315197e-04	ci right 1.544131e-04	k: 609	n:4270000
KALRN   4270000 perm   9445 sec   (452 perm/sec)   p_kst 1.426230e-04   p_cons 3.515148e-01   p_joint 1.426230e-04

Joint ci ratio: 1.585749e-01	ci left: 1.314368e-04	ci right 1.542952e-04	k: 610	n:4280000
Cons ci ratio: 2.573787e-03	ci left: 3.510306e-01	ci right 3.519355e-01	k: 1504347	n:4280000
KS ci ratio: 1.585749e-01	ci left: 1.314368e-04	ci right 1.542952e-04	k: 610	n:4280000
KALRN   4280000 perm   9485 sec   (451 perm/sec)   p_kst 1.425234e-04   p_cons 3.514829e-01   p_joint 1.425234e-04

Joint ci ratio: 1.583160e-01	ci left: 1.315781e-04	ci right 1.544202e-04	k: 612	n:4290000
Cons ci ratio: 2.570835e-03	ci left: 3.510223e-01	ci right 3.519261e-01	k: 1507824	n:4290000
KS ci ratio: 1.583160e-01	ci left: 1.315781e-04	ci right 1.544202e-04	k: 612	n:4290000
KALRN   4290000 perm   9525 sec   (450 perm/sec)   p_kst 1.426573e-04   p_cons 3.514741e-01   p_joint 1.426573e-04

Joint ci ratio: 1.583160e-01	ci left: 1.312721e-04	ci right 1.540611e-04	k: 612	n:4300000
Cons ci ratio: 2.567842e-03	ci left: 3.510231e-01	ci right 3.519259e-01	k: 1511340	n:4300000
KS ci ratio: 1.583160e-01	ci left: 1.312721e-04	ci right 1.540611e-04	k: 612	n:4300000
KALRN   4300000 perm   9566 sec   (450 perm/sec)   p_kst 1.423256e-04   p_cons 3.514744e-01   p_joint 1.423256e-04

Joint ci ratio: 1.581870e-01	ci left: 1.311904e-04	ci right 1.539448e-04	k: 613	n:4310000
Cons ci ratio: 2.564795e-03	ci left: 3.510356e-01	ci right 3.519373e-01	k: 1514906	n:4310000
KS ci ratio: 1.581870e-01	ci left: 1.311904e-04	ci right 1.539448e-04	k: 613	n:4310000
KALRN   4310000 perm   9606 sec   (449 perm/sec)   p_kst 1.422274e-04   p_cons 3.514863e-01   p_joint 1.422274e-04

Joint ci ratio: 1.580584e-01	ci left: 1.311090e-04	ci right 1.538291e-04	k: 614	n:4320000
Cons ci ratio: 2.561797e-03	ci left: 3.510410e-01	ci right 3.519416e-01	k: 1518442	n:4320000
KS ci ratio: 1.580584e-01	ci left: 1.311090e-04	ci right 1.538291e-04	k: 614	n:4320000
KALRN   4320000 perm   9647 sec   (448 perm/sec)   p_kst 1.421296e-04   p_cons 3.514912e-01   p_joint 1.421296e-04

Joint ci ratio: 1.580584e-01	ci left: 1.308062e-04	ci right 1.534738e-04	k: 614	n:4330000
Cons ci ratio: 2.558788e-03	ci left: 3.510503e-01	ci right 3.519499e-01	k: 1521995	n:4330000
KS ci ratio: 1.580584e-01	ci left: 1.308062e-04	ci right 1.534738e-04	k: 614	n:4330000
KALRN   4330000 perm   9688 sec   (447 perm/sec)   p_kst 1.418014e-04   p_cons 3.515000e-01   p_joint 1.418014e-04

Joint ci ratio: 1.580584e-01	ci left: 1.305048e-04	ci right 1.531202e-04	k: 614	n:4340000
Cons ci ratio: 2.555870e-03	ci left: 3.510450e-01	ci right 3.519436e-01	k: 1525485	n:4340000
KS ci ratio: 1.580584e-01	ci left: 1.305048e-04	ci right 1.531202e-04	k: 614	n:4340000
KALRN   4340000 perm   9728 sec   (446 perm/sec)   p_kst 1.414747e-04   p_cons 3.514942e-01   p_joint 1.414747e-04

Joint ci ratio: 1.579301e-01	ci left: 1.304256e-04	ci right 1.530072e-04	k: 615	n:4350000
Cons ci ratio: 2.552899e-03	ci left: 3.510513e-01	ci right 3.519489e-01	k: 1529025	n:4350000
KS ci ratio: 1.579301e-01	ci left: 1.304256e-04	ci right 1.530072e-04	k: 615	n:4350000
KALRN   4350000 perm   9770 sec   (445 perm/sec)   p_kst 1.413793e-04   p_cons 3.515000e-01   p_joint 1.413793e-04

Joint ci ratio: 1.579301e-01	ci left: 1.301265e-04	ci right 1.526563e-04	k: 615	n:4360000
Cons ci ratio: 2.549928e-03	ci left: 3.510592e-01	ci right 3.519557e-01	k: 1532572	n:4360000
KS ci ratio: 1.579301e-01	ci left: 1.301265e-04	ci right 1.526563e-04	k: 615	n:4360000
KALRN   4360000 perm   9811 sec   (444 perm/sec)   p_kst 1.410550e-04   p_cons 3.515073e-01   p_joint 1.410550e-04

Joint ci ratio: 1.579302e-01	ci left: 1.298287e-04	ci right 1.523069e-04	k: 615	n:4370000
Cons ci ratio: 2.546977e-03	ci left: 3.510654e-01	ci right 3.519609e-01	k: 1536112	n:4370000
KS ci ratio: 1.579302e-01	ci left: 1.298287e-04	ci right 1.523069e-04	k: 615	n:4370000
KALRN   4370000 perm   9853 sec   (444 perm/sec)   p_kst 1.407323e-04   p_cons 3.515130e-01   p_joint 1.407323e-04

Joint ci ratio: 1.579302e-01	ci left: 1.295323e-04	ci right 1.519592e-04	k: 615	n:4380000
Cons ci ratio: 2.544044e-03	ci left: 3.510702e-01	ci right 3.519647e-01	k: 1539646	n:4380000
KS ci ratio: 1.579302e-01	ci left: 1.295323e-04	ci right 1.519592e-04	k: 615	n:4380000
KALRN   4380000 perm   9894 sec   (443 perm/sec)   p_kst 1.404110e-04   p_cons 3.515174e-01   p_joint 1.404110e-04

Joint ci ratio: 1.576744e-01	ci left: 1.296748e-04	ci right 1.520866e-04	k: 617	n:4390000
Cons ci ratio: 2.541231e-03	ci left: 3.510552e-01	ci right 3.519486e-01	k: 1543093	n:4390000
KS ci ratio: 1.576744e-01	ci left: 1.296748e-04	ci right 1.520866e-04	k: 617	n:4390000
KALRN   4390000 perm   9936 sec   (442 perm/sec)   p_kst 1.405467e-04   p_cons 3.515018e-01   p_joint 1.405467e-04

Joint ci ratio: 1.575470e-01	ci left: 1.295984e-04	ci right 1.519772e-04	k: 618	n:4400000
Cons ci ratio: 2.538375e-03	ci left: 3.510498e-01	ci right 3.519422e-01	k: 1546582	n:4400000
KS ci ratio: 1.575470e-01	ci left: 1.295984e-04	ci right 1.519772e-04	k: 618	n:4400000
KALRN   4400000 perm   9977 sec   (441 perm/sec)   p_kst 1.404545e-04   p_cons 3.514959e-01   p_joint 1.404545e-04

Joint ci ratio: 1.572931e-01	ci left: 1.297402e-04	ci right 1.521039e-04	k: 620	n:4410000
Cons ci ratio: 2.535418e-03	ci left: 3.510641e-01	ci right 3.519556e-01	k: 1550158	n:4410000
KS ci ratio: 1.572931e-01	ci left: 1.297402e-04	ci right 1.521039e-04	k: 620	n:4410000
KALRN   4410000 perm   10018 sec   (440 perm/sec)   p_kst 1.405896e-04   p_cons 3.515098e-01   p_joint 1.405896e-04

Joint ci ratio: 1.571666e-01	ci left: 1.296640e-04	ci right 1.519949e-04	k: 621	n:4420000
Cons ci ratio: 2.532615e-03	ci left: 3.510526e-01	ci right 3.519430e-01	k: 1553620	n:4420000
KS ci ratio: 1.571666e-01	ci left: 1.296640e-04	ci right 1.519949e-04	k: 621	n:4420000
KALRN   4420000 perm   10060 sec   (439 perm/sec)   p_kst 1.404977e-04   p_cons 3.514977e-01   p_joint 1.404977e-04

Joint ci ratio: 1.571666e-01	ci left: 1.293713e-04	ci right 1.516518e-04	k: 621	n:4430000
Cons ci ratio: 2.529724e-03	ci left: 3.510588e-01	ci right 3.519482e-01	k: 1557160	n:4430000
KS ci ratio: 1.571666e-01	ci left: 1.293713e-04	ci right 1.516518e-04	k: 621	n:4430000
KALRN   4430000 perm   10101 sec   (439 perm/sec)   p_kst 1.401806e-04   p_cons 3.515034e-01   p_joint 1.401806e-04

Joint ci ratio: 1.570404e-01	ci left: 1.292963e-04	ci right 1.515444e-04	k: 622	n:4440000
Cons ci ratio: 2.526823e-03	ci left: 3.510683e-01	ci right 3.519567e-01	k: 1560715	n:4440000
KS ci ratio: 1.570404e-01	ci left: 1.292963e-04	ci right 1.515444e-04	k: 622	n:4440000
KALRN   4440000 perm   10142 sec   (438 perm/sec)   p_kst 1.400901e-04   p_cons 3.515124e-01   p_joint 1.400901e-04

Joint ci ratio: 1.569146e-01	ci left: 1.292216e-04	ci right 1.514373e-04	k: 623	n:4450000
Cons ci ratio: 2.523933e-03	ci left: 3.510777e-01	ci right 3.519652e-01	k: 1564270	n:4450000
KS ci ratio: 1.569146e-01	ci left: 1.292216e-04	ci right 1.514373e-04	k: 623	n:4450000
KALRN   4450000 perm   10183 sec   (437 perm/sec)   p_kst 1.400000e-04   p_cons 3.515213e-01   p_joint 1.400000e-04

Joint ci ratio: 1.566637e-01	ci left: 1.293627e-04	ci right 1.515638e-04	k: 625	n:4460000
Cons ci ratio: 2.521139e-03	ci left: 3.510715e-01	ci right 3.519579e-01	k: 1567755	n:4460000
KS ci ratio: 1.566637e-01	ci left: 1.293627e-04	ci right 1.515638e-04	k: 625	n:4460000
KALRN   4460000 perm   10224 sec   (436 perm/sec)   p_kst 1.401345e-04   p_cons 3.515146e-01   p_joint 1.401345e-04

Joint ci ratio: 1.564140e-01	ci left: 1.295032e-04	ci right 1.516897e-04	k: 627	n:4470000
Cons ci ratio: 2.518314e-03	ci left: 3.510726e-01	ci right 3.519580e-01	k: 1571273	n:4470000
KS ci ratio: 1.564140e-01	ci left: 1.295032e-04	ci right 1.516897e-04	k: 627	n:4470000
KALRN   4470000 perm   10267 sec   (435 perm/sec)   p_kst 1.402685e-04   p_cons 3.515152e-01   p_joint 1.402685e-04

Joint ci ratio: 1.561655e-01	ci left: 1.296432e-04	ci right 1.518150e-04	k: 629	n:4480000
Cons ci ratio: 2.515508e-03	ci left: 3.510719e-01	ci right 3.519564e-01	k: 1574783	n:4480000
KS ci ratio: 1.561655e-01	ci left: 1.296432e-04	ci right 1.518150e-04	k: 629	n:4480000
KALRN   4480000 perm   10309 sec   (435 perm/sec)   p_kst 1.404018e-04   p_cons 3.515141e-01   p_joint 1.404018e-04

Joint ci ratio: 1.559182e-01	ci left: 1.297825e-04	ci right 1.519397e-04	k: 631	n:4490000
Cons ci ratio: 2.512708e-03	ci left: 3.510720e-01	ci right 3.519554e-01	k: 1578296	n:4490000
KS ci ratio: 1.559182e-01	ci left: 1.297825e-04	ci right 1.519397e-04	k: 631	n:4490000
KALRN   4490000 perm   10351 sec   (434 perm/sec)   p_kst 1.405345e-04   p_cons 3.515136e-01   p_joint 1.405345e-04

Joint ci ratio: 1.557950e-01	ci left: 1.297076e-04	ci right 1.518329e-04	k: 632	n:4500000
Cons ci ratio: 2.509955e-03	ci left: 3.510651e-01	ci right 3.519476e-01	k: 1581778	n:4500000
KS ci ratio: 1.557950e-01	ci left: 1.297076e-04	ci right 1.518329e-04	k: 632	n:4500000
KALRN   4500000 perm   10393 sec   (433 perm/sec)   p_kst 1.404444e-04   p_cons 3.515062e-01   p_joint 1.404444e-04

Joint ci ratio: 1.555495e-01	ci left: 1.298462e-04	ci right 1.519570e-04	k: 634	n:4510000
Cons ci ratio: 2.507138e-03	ci left: 3.510715e-01	ci right 3.519530e-01	k: 1585320	n:4510000
KS ci ratio: 1.555495e-01	ci left: 1.298462e-04	ci right 1.519570e-04	k: 634	n:4510000
KALRN   4510000 perm   10434 sec   (432 perm/sec)   p_kst 1.405765e-04   p_cons 3.515122e-01   p_joint 1.405765e-04

Joint ci ratio: 1.554272e-01	ci left: 1.297716e-04	ci right 1.518506e-04	k: 635	n:4520000
Cons ci ratio: 2.504406e-03	ci left: 3.510643e-01	ci right 3.519448e-01	k: 1588800	n:4520000
KS ci ratio: 1.554272e-01	ci left: 1.297716e-04	ci right 1.518506e-04	k: 635	n:4520000
KALRN   4520000 perm   10477 sec   (431 perm/sec)   p_kst 1.404867e-04   p_cons 3.515044e-01   p_joint 1.404867e-04

Joint ci ratio: 1.554272e-01	ci left: 1.294851e-04	ci right 1.515154e-04	k: 635	n:4530000
Cons ci ratio: 2.501692e-03	ci left: 3.510552e-01	ci right 3.519348e-01	k: 1592272	n:4530000
KS ci ratio: 1.554272e-01	ci left: 1.294851e-04	ci right 1.515154e-04	k: 635	n:4530000
KALRN   4530000 perm   10519 sec   (431 perm/sec)   p_kst 1.401766e-04   p_cons 3.514949e-01   p_joint 1.401766e-04

Joint ci ratio: 1.554272e-01	ci left: 1.291999e-04	ci right 1.511817e-04	k: 635	n:4540000
Cons ci ratio: 2.498922e-03	ci left: 3.510582e-01	ci right 3.519367e-01	k: 1595798	n:4540000
KS ci ratio: 1.554272e-01	ci left: 1.291999e-04	ci right 1.511817e-04	k: 635	n:4540000
KALRN   4540000 perm   10564 sec   (430 perm/sec)   p_kst 1.398678e-04   p_cons 3.514974e-01   p_joint 1.398678e-04

Joint ci ratio: 1.554272e-01	ci left: 1.289159e-04	ci right 1.508494e-04	k: 635	n:4550000
Cons ci ratio: 2.496112e-03	ci left: 3.510701e-01	ci right 3.519477e-01	k: 1599365	n:4550000
KS ci ratio: 1.554272e-01	ci left: 1.289159e-04	ci right 1.508494e-04	k: 635	n:4550000
KALRN   4550000 perm   10607 sec   (429 perm/sec)   p_kst 1.395604e-04   p_cons 3.515088e-01   p_joint 1.395604e-04

Joint ci ratio: 1.553052e-01	ci left: 1.288440e-04	ci right 1.507464e-04	k: 636	n:4560000
Cons ci ratio: 2.493436e-03	ci left: 3.510591e-01	ci right 3.519358e-01	k: 1602828	n:4560000
KS ci ratio: 1.553052e-01	ci left: 1.288440e-04	ci right 1.507464e-04	k: 636	n:4560000
KALRN   4560000 perm   10649 sec   (428 perm/sec)   p_kst 1.394737e-04   p_cons 3.514974e-01   p_joint 1.394737e-04

Joint ci ratio: 1.550619e-01	ci left: 1.289827e-04	ci right 1.508712e-04	k: 638	n:4570000
Cons ci ratio: 2.490756e-03	ci left: 3.510507e-01	ci right 3.519263e-01	k: 1606302	n:4570000
KS ci ratio: 1.550619e-01	ci left: 1.289827e-04	ci right 1.508712e-04	k: 638	n:4570000
KALRN   4570000 perm   10692 sec   (427 perm/sec)   p_kst 1.396061e-04   p_cons 3.514884e-01   p_joint 1.396061e-04

Joint ci ratio: 1.549408e-01	ci left: 1.289109e-04	ci right 1.507686e-04	k: 639	n:4580000
Cons ci ratio: 2.488133e-03	ci left: 3.510333e-01	ci right 3.519080e-01	k: 1609735	n:4580000
KS ci ratio: 1.549408e-01	ci left: 1.289109e-04	ci right 1.507686e-04	k: 639	n:4580000
KALRN   4580000 perm   10736 sec   (427 perm/sec)   p_kst 1.395197e-04   p_cons 3.514705e-01   p_joint 1.395197e-04

Joint ci ratio: 1.546992e-01	ci left: 1.290489e-04	ci right 1.508927e-04	k: 641	n:4590000
Cons ci ratio: 2.485392e-03	ci left: 3.510390e-01	ci right 3.519128e-01	k: 1613274	n:4590000
KS ci ratio: 1.546992e-01	ci left: 1.290489e-04	ci right 1.508927e-04	k: 641	n:4590000
KALRN   4590000 perm   10780 sec   (426 perm/sec)   p_kst 1.396514e-04   p_cons 3.514758e-01   p_joint 1.396514e-04

Joint ci ratio: 1.545789e-01	ci left: 1.289774e-04	ci right 1.507904e-04	k: 642	n:4600000
Cons ci ratio: 2.482701e-03	ci left: 3.510374e-01	ci right 3.519102e-01	k: 1616779	n:4600000
KS ci ratio: 1.545789e-01	ci left: 1.289774e-04	ci right 1.507904e-04	k: 642	n:4600000
KALRN   4600000 perm   10824 sec   (425 perm/sec)   p_kst 1.395652e-04   p_cons 3.514737e-01   p_joint 1.395652e-04

Joint ci ratio: 1.545789e-01	ci left: 1.286976e-04	ci right 1.504634e-04	k: 642	n:4610000
Cons ci ratio: 2.480025e-03	ci left: 3.510344e-01	ci right 3.519063e-01	k: 1620278	n:4610000
KS ci ratio: 1.545789e-01	ci left: 1.286976e-04	ci right 1.504634e-04	k: 642	n:4610000
KALRN   4610000 perm   10867 sec   (424 perm/sec)   p_kst 1.392625e-04   p_cons 3.514703e-01   p_joint 1.392625e-04

Joint ci ratio: 1.544589e-01	ci left: 1.286271e-04	ci right 1.503625e-04	k: 643	n:4620000
Cons ci ratio: 2.477319e-03	ci left: 3.510387e-01	ci right 3.519096e-01	k: 1623810	n:4620000
KS ci ratio: 1.544589e-01	ci left: 1.286271e-04	ci right 1.503625e-04	k: 643	n:4620000
KALRN   4620000 perm   10910 sec   (423 perm/sec)   p_kst 1.391775e-04   p_cons 3.514740e-01   p_joint 1.391775e-04

Joint ci ratio: 1.543391e-01	ci left: 1.285569e-04	ci right 1.502621e-04	k: 644	n:4630000
Cons ci ratio: 2.474572e-03	ci left: 3.510521e-01	ci right 3.519221e-01	k: 1627385	n:4630000
KS ci ratio: 1.543391e-01	ci left: 1.285569e-04	ci right 1.502621e-04	k: 644	n:4630000
KALRN   4630000 perm   10954 sec   (423 perm/sec)   p_kst 1.390929e-04   p_cons 3.514870e-01   p_joint 1.390929e-04

Joint ci ratio: 1.541003e-01	ci left: 1.286943e-04	ci right 1.503859e-04	k: 646	n:4640000
Cons ci ratio: 2.471926e-03	ci left: 3.510485e-01	ci right 3.519176e-01	k: 1630881	n:4640000
KS ci ratio: 1.541003e-01	ci left: 1.286943e-04	ci right 1.503859e-04	k: 646	n:4640000
KALRN   4640000 perm   10998 sec   (422 perm/sec)   p_kst 1.392241e-04   p_cons 3.514830e-01   p_joint 1.392241e-04

Joint ci ratio: 1.541004e-01	ci left: 1.284175e-04	ci right 1.500625e-04	k: 646	n:4650000
Cons ci ratio: 2.469369e-03	ci left: 3.510301e-01	ci right 3.518982e-01	k: 1634308	n:4650000
KS ci ratio: 1.541004e-01	ci left: 1.284175e-04	ci right 1.500625e-04	k: 646	n:4650000
KALRN   4650000 perm   11042 sec   (421 perm/sec)   p_kst 1.389247e-04   p_cons 3.514641e-01   p_joint 1.389247e-04

Joint ci ratio: 1.538627e-01	ci left: 1.285546e-04	ci right 1.501861e-04	k: 648	n:4660000
Cons ci ratio: 2.466802e-03	ci left: 3.510150e-01	ci right 3.518822e-01	k: 1637750	n:4660000
KS ci ratio: 1.538627e-01	ci left: 1.285546e-04	ci right 1.501861e-04	k: 648	n:4660000
KALRN   4660000 perm   11085 sec   (420 perm/sec)   p_kst 1.390558e-04   p_cons 3.514485e-01   p_joint 1.390558e-04

Joint ci ratio: 1.538628e-01	ci left: 1.282793e-04	ci right 1.498645e-04	k: 648	n:4670000
Cons ci ratio: 2.464191e-03	ci left: 3.510096e-01	ci right 3.518758e-01	k: 1641237	n:4670000
KS ci ratio: 1.538628e-01	ci left: 1.282793e-04	ci right 1.498645e-04	k: 648	n:4670000
KALRN   4670000 perm   11130 sec   (420 perm/sec)   p_kst 1.387580e-04   p_cons 3.514426e-01   p_joint 1.387580e-04

Joint ci ratio: 1.537444e-01	ci left: 1.282107e-04	ci right 1.497662e-04	k: 649	n:4680000
Cons ci ratio: 2.461555e-03	ci left: 3.510104e-01	ci right 3.518757e-01	k: 1644753	n:4680000
KS ci ratio: 1.537444e-01	ci left: 1.282107e-04	ci right 1.497662e-04	k: 649	n:4680000
KALRN   4680000 perm   11175 sec   (419 perm/sec)   p_kst 1.386752e-04   p_cons 3.514429e-01   p_joint 1.386752e-04

Joint ci ratio: 1.532734e-01	ci left: 1.287574e-04	ci right 1.503325e-04	k: 653	n:4690000
Cons ci ratio: 2.458873e-03	ci left: 3.510214e-01	ci right 3.518858e-01	k: 1648317	n:4690000
KS ci ratio: 1.532734e-01	ci left: 1.287574e-04	ci right 1.503325e-04	k: 653	n:4690000
KALRN   4690000 perm   11219 sec   (418 perm/sec)   p_kst 1.392324e-04   p_cons 3.514535e-01   p_joint 1.392324e-04

Joint ci ratio: 1.531564e-01	ci left: 1.286881e-04	ci right 1.502336e-04	k: 654	n:4700000
Cons ci ratio: 2.456205e-03	ci left: 3.510313e-01	ci right 3.518948e-01	k: 1651876	n:4700000
KS ci ratio: 1.531564e-01	ci left: 1.286881e-04	ci right 1.502336e-04	k: 654	n:4700000
KALRN   4700000 perm   11263 sec   (417 perm/sec)   p_kst 1.391489e-04   p_cons 3.514630e-01   p_joint 1.391489e-04

Joint ci ratio: 1.529231e-01	ci left: 1.288232e-04	ci right 1.503555e-04	k: 656	n:4710000
Cons ci ratio: 2.453582e-03	ci left: 3.510344e-01	ci right 3.518970e-01	k: 1655403	n:4710000
KS ci ratio: 1.529231e-01	ci left: 1.288232e-04	ci right 1.503555e-04	k: 656	n:4710000
KALRN   4710000 perm   11308 sec   (417 perm/sec)   p_kst 1.392781e-04   p_cons 3.514656e-01   p_joint 1.392781e-04

Joint ci ratio: 1.528068e-01	ci left: 1.287540e-04	ci right 1.502569e-04	k: 657	n:4720000
Cons ci ratio: 2.450853e-03	ci left: 3.510587e-01	ci right 3.519203e-01	k: 1659030	n:4720000
KS ci ratio: 1.528068e-01	ci left: 1.287540e-04	ci right 1.502569e-04	k: 657	n:4720000
KALRN   4720000 perm   11352 sec   (416 perm/sec)   p_kst 1.391949e-04   p_cons 3.514894e-01   p_joint 1.391949e-04

Joint ci ratio: 1.525751e-01	ci left: 1.288885e-04	ci right 1.503782e-04	k: 659	n:4730000
Cons ci ratio: 2.448369e-03	ci left: 3.510391e-01	ci right 3.518998e-01	k: 1662450	n:4730000
KS ci ratio: 1.525751e-01	ci left: 1.288885e-04	ci right 1.503782e-04	k: 659	n:4730000
KALRN   4730000 perm   11396 sec   (415 perm/sec)   p_kst 1.393235e-04   p_cons 3.514693e-01   p_joint 1.393235e-04

Joint ci ratio: 1.524597e-01	ci left: 1.288195e-04	ci right 1.502799e-04	k: 660	n:4740000
Cons ci ratio: 2.445872e-03	ci left: 3.510234e-01	ci right 3.518832e-01	k: 1665888	n:4740000
KS ci ratio: 1.524597e-01	ci left: 1.288195e-04	ci right 1.502799e-04	k: 660	n:4740000
KALRN   4740000 perm   11442 sec   (414 perm/sec)   p_kst 1.392405e-04   p_cons 3.514532e-01   p_joint 1.392405e-04

Joint ci ratio: 1.523445e-01	ci left: 1.287508e-04	ci right 1.501821e-04	k: 661	n:4750000
Cons ci ratio: 2.443335e-03	ci left: 3.510165e-01	ci right 3.518754e-01	k: 1669368	n:4750000
KS ci ratio: 1.523445e-01	ci left: 1.287508e-04	ci right 1.501821e-04	k: 661	n:4750000
KALRN   4750000 perm   11486 sec   (414 perm/sec)   p_kst 1.391579e-04   p_cons 3.514459e-01   p_joint 1.391579e-04

Joint ci ratio: 1.520004e-01	ci left: 1.290866e-04	ci right 1.505208e-04	k: 664	n:4760000
Cons ci ratio: 2.440721e-03	ci left: 3.510255e-01	ci right 3.518835e-01	k: 1672923	n:4760000
KS ci ratio: 1.520004e-01	ci left: 1.290866e-04	ci right 1.505208e-04	k: 664	n:4760000
KALRN   4760000 perm   11531 sec   (413 perm/sec)   p_kst 1.394958e-04   p_cons 3.514544e-01   p_joint 1.394958e-04

Joint ci ratio: 1.518863e-01	ci left: 1.290176e-04	ci right 1.504229e-04	k: 665	n:4770000
Cons ci ratio: 2.438161e-03	ci left: 3.510260e-01	ci right 3.518831e-01	k: 1676438	n:4770000
KS ci ratio: 1.518863e-01	ci left: 1.290176e-04	ci right 1.504229e-04	k: 665	n:4770000
KALRN   4770000 perm   11576 sec   (412 perm/sec)   p_kst 1.394130e-04   p_cons 3.514545e-01   p_joint 1.394130e-04

Joint ci ratio: 1.516587e-01	ci left: 1.291502e-04	ci right 1.505425e-04	k: 667	n:4780000
Cons ci ratio: 2.435605e-03	ci left: 3.510272e-01	ci right 3.518834e-01	k: 1679956	n:4780000
KS ci ratio: 1.516587e-01	ci left: 1.291502e-04	ci right 1.505425e-04	k: 667	n:4780000
KALRN   4780000 perm   11622 sec   (411 perm/sec)   p_kst 1.395397e-04   p_cons 3.514552e-01   p_joint 1.395397e-04

Joint ci ratio: 1.512067e-01	ci left: 1.296840e-04	ci right 1.510949e-04	k: 671	n:4790000
Cons ci ratio: 2.433094e-03	ci left: 3.510215e-01	ci right 3.518768e-01	k: 1683441	n:4790000
KS ci ratio: 1.512067e-01	ci left: 1.296840e-04	ci right 1.510949e-04	k: 671	n:4790000
KALRN   4790000 perm   11667 sec   (411 perm/sec)   p_kst 1.400835e-04   p_cons 3.514491e-01   p_joint 1.400835e-04

Joint ci ratio: 1.509821e-01	ci left: 1.298148e-04	ci right 1.512125e-04	k: 673	n:4800000
Cons ci ratio: 2.430639e-03	ci left: 3.510068e-01	ci right 3.518612e-01	k: 1686883	n:4800000
KS ci ratio: 1.509821e-01	ci left: 1.298148e-04	ci right 1.512125e-04	k: 673	n:4800000
KALRN   4800000 perm   11712 sec   (410 perm/sec)   p_kst 1.402083e-04   p_cons 3.514340e-01   p_joint 1.402083e-04

Joint ci ratio: 1.506472e-01	ci left: 1.301451e-04	ci right 1.515454e-04	k: 676	n:4810000
Cons ci ratio: 2.428167e-03	ci left: 3.509968e-01	ci right 3.518503e-01	k: 1690347	n:4810000
KS ci ratio: 1.506472e-01	ci left: 1.301451e-04	ci right 1.515454e-04	k: 676	n:4810000
KALRN   4810000 perm   11758 sec   (409 perm/sec)   p_kst 1.405405e-04   p_cons 3.514235e-01   p_joint 1.405405e-04

Joint ci ratio: 1.506472e-01	ci left: 1.298751e-04	ci right 1.512310e-04	k: 676	n:4820000
Cons ci ratio: 2.425613e-03	ci left: 3.510037e-01	ci right 3.518563e-01	k: 1693892	n:4820000
KS ci ratio: 1.506472e-01	ci left: 1.298751e-04	ci right 1.512310e-04	k: 676	n:4820000
KALRN   4820000 perm   11803 sec   (408 perm/sec)   p_kst 1.402490e-04   p_cons 3.514299e-01   p_joint 1.402490e-04

Joint ci ratio: 1.505361e-01	ci left: 1.298054e-04	ci right 1.511327e-04	k: 677	n:4830000
Cons ci ratio: 2.423122e-03	ci left: 3.510001e-01	ci right 3.518518e-01	k: 1697387	n:4830000
KS ci ratio: 1.505361e-01	ci left: 1.298054e-04	ci right 1.511327e-04	k: 677	n:4830000
KALRN   4830000 perm   11849 sec   (408 perm/sec)   p_kst 1.401656e-04   p_cons 3.514259e-01   p_joint 1.401656e-04

Joint ci ratio: 1.503146e-01	ci left: 1.299349e-04	ci right 1.512492e-04	k: 679	n:4840000
Cons ci ratio: 2.420654e-03	ci left: 3.509937e-01	ci right 3.518445e-01	k: 1700868	n:4840000
KS ci ratio: 1.503146e-01	ci left: 1.299349e-04	ci right 1.512492e-04	k: 679	n:4840000
KALRN   4840000 perm   11894 sec   (407 perm/sec)   p_kst 1.402893e-04   p_cons 3.514190e-01   p_joint 1.402893e-04

Joint ci ratio: 1.502042e-01	ci left: 1.298654e-04	ci right 1.511513e-04	k: 680	n:4850000
Cons ci ratio: 2.418242e-03	ci left: 3.509780e-01	ci right 3.518280e-01	k: 1704304	n:4850000
KS ci ratio: 1.502042e-01	ci left: 1.298654e-04	ci right 1.511513e-04	k: 680	n:4850000
KALRN   4850000 perm   11939 sec   (406 perm/sec)   p_kst 1.402062e-04   p_cons 3.514029e-01   p_joint 1.402062e-04

Joint ci ratio: 1.502042e-01	ci left: 1.295982e-04	ci right 1.508403e-04	k: 680	n:4860000
Cons ci ratio: 2.415732e-03	ci left: 3.509825e-01	ci right 3.518316e-01	k: 1707838	n:4860000
KS ci ratio: 1.502042e-01	ci left: 1.295982e-04	ci right 1.508403e-04	k: 680	n:4860000
KALRN   4860000 perm   11984 sec   (406 perm/sec)   p_kst 1.399177e-04   p_cons 3.514070e-01   p_joint 1.399177e-04

Joint ci ratio: 1.502042e-01	ci left: 1.293321e-04	ci right 1.505305e-04	k: 680	n:4870000
Cons ci ratio: 2.413213e-03	ci left: 3.509899e-01	ci right 3.518382e-01	k: 1711386	n:4870000
KS ci ratio: 1.502042e-01	ci left: 1.293321e-04	ci right 1.505305e-04	k: 680	n:4870000
KALRN   4870000 perm   12029 sec   (405 perm/sec)   p_kst 1.396304e-04   p_cons 3.514140e-01   p_joint 1.396304e-04

Joint ci ratio: 1.496558e-01	ci left: 1.300532e-04	ci right 1.512851e-04	k: 685	n:4880000
Cons ci ratio: 2.410616e-03	ci left: 3.510137e-01	ci right 3.518611e-01	k: 1715014	n:4880000
KS ci ratio: 1.496558e-01	ci left: 1.300532e-04	ci right 1.512851e-04	k: 685	n:4880000
KALRN   4880000 perm   12075 sec   (404 perm/sec)   p_kst 1.403689e-04   p_cons 3.514373e-01   p_joint 1.403689e-04

Joint ci ratio: 1.495468e-01	ci left: 1.299841e-04	ci right 1.511878e-04	k: 686	n:4890000
Cons ci ratio: 2.408227e-03	ci left: 3.509995e-01	ci right 3.518460e-01	k: 1718457	n:4890000
KS ci ratio: 1.495468e-01	ci left: 1.299841e-04	ci right 1.511878e-04	k: 686	n:4890000
KALRN   4890000 perm   12122 sec   (403 perm/sec)   p_kst 1.402863e-04   p_cons 3.514227e-01   p_joint 1.402863e-04

Joint ci ratio: 1.494381e-01	ci left: 1.299153e-04	ci right 1.510910e-04	k: 687	n:4900000
Cons ci ratio: 2.405778e-03	ci left: 3.509981e-01	ci right 3.518437e-01	k: 1721962	n:4900000
KS ci ratio: 1.494381e-01	ci left: 1.299153e-04	ci right 1.510910e-04	k: 687	n:4900000
KALRN   4900000 perm   12168 sec   (403 perm/sec)   p_kst 1.402041e-04   p_cons 3.514208e-01   p_joint 1.402041e-04

Joint ci ratio: 1.494381e-01	ci left: 1.296507e-04	ci right 1.507833e-04	k: 687	n:4910000
Cons ci ratio: 2.403400e-03	ci left: 3.509846e-01	ci right 3.518294e-01	k: 1725408	n:4910000
KS ci ratio: 1.494381e-01	ci left: 1.296507e-04	ci right 1.507833e-04	k: 687	n:4910000
KALRN   4910000 perm   12213 sec   (402 perm/sec)   p_kst 1.399185e-04   p_cons 3.514069e-01   p_joint 1.399185e-04

Joint ci ratio: 1.493296e-01	ci left: 1.295828e-04	ci right 1.506876e-04	k: 688	n:4920000
Cons ci ratio: 2.401015e-03	ci left: 3.509741e-01	ci right 3.518180e-01	k: 1728868	n:4920000
KS ci ratio: 1.493296e-01	ci left: 1.295828e-04	ci right 1.506876e-04	k: 688	n:4920000
KALRN   4920000 perm   12260 sec   (401 perm/sec)   p_kst 1.398374e-04   p_cons 3.513959e-01   p_joint 1.398374e-04

Joint ci ratio: 1.493297e-01	ci left: 1.293200e-04	ci right 1.503820e-04	k: 688	n:4930000
Cons ci ratio: 2.398509e-03	ci left: 3.509877e-01	ci right 3.518307e-01	k: 1732447	n:4930000
KS ci ratio: 1.493297e-01	ci left: 1.293200e-04	ci right 1.503820e-04	k: 688	n:4930000
KALRN   4930000 perm   12305 sec   (401 perm/sec)   p_kst 1.395538e-04   p_cons 3.514091e-01   p_joint 1.395538e-04

Joint ci ratio: 1.491134e-01	ci left: 1.294479e-04	ci right 1.504975e-04	k: 690	n:4940000
Cons ci ratio: 2.396132e-03	ci left: 3.509782e-01	ci right 3.518204e-01	k: 1735912	n:4940000
KS ci ratio: 1.491134e-01	ci left: 1.294479e-04	ci right 1.504975e-04	k: 690	n:4940000
KALRN   4940000 perm   12351 sec   (400 perm/sec)   p_kst 1.396761e-04   p_cons 3.513992e-01   p_joint 1.396761e-04

Joint ci ratio: 1.488980e-01	ci left: 1.295754e-04	ci right 1.506126e-04	k: 692	n:4950000
Cons ci ratio: 2.393642e-03	ci left: 3.509917e-01	ci right 3.518331e-01	k: 1739491	n:4950000
KS ci ratio: 1.488980e-01	ci left: 1.295754e-04	ci right 1.506126e-04	k: 692	n:4950000
KALRN   4950000 perm   12397 sec   (399 perm/sec)   p_kst 1.397980e-04   p_cons 3.514123e-01   p_joint 1.397980e-04

Joint ci ratio: 1.487907e-01	ci left: 1.295083e-04	ci right 1.505181e-04	k: 693	n:4960000
Cons ci ratio: 2.391243e-03	ci left: 3.509891e-01	ci right 3.518296e-01	k: 1742990	n:4960000
KS ci ratio: 1.487907e-01	ci left: 1.295083e-04	ci right 1.505181e-04	k: 693	n:4960000
KALRN   4960000 perm   12445 sec   (399 perm/sec)   p_kst 1.397177e-04   p_cons 3.514093e-01   p_joint 1.397177e-04

Joint ci ratio: 1.487908e-01	ci left: 1.292477e-04	ci right 1.502152e-04	k: 693	n:4970000
Cons ci ratio: 2.388728e-03	ci left: 3.510102e-01	ci right 3.518499e-01	k: 1746607	n:4970000
KS ci ratio: 1.487908e-01	ci left: 1.292477e-04	ci right 1.502152e-04	k: 693	n:4970000
KALRN   4970000 perm   12492 sec   (398 perm/sec)   p_kst 1.394366e-04   p_cons 3.514300e-01   p_joint 1.394366e-04

Joint ci ratio: 1.484702e-01	ci left: 1.295682e-04	ci right 1.505384e-04	k: 696	n:4980000
Cons ci ratio: 2.386401e-03	ci left: 3.509967e-01	ci right 3.518356e-01	k: 1750052	n:4980000
KS ci ratio: 1.484702e-01	ci left: 1.295682e-04	ci right 1.505384e-04	k: 696	n:4980000
KALRN   4980000 perm   12538 sec   (397 perm/sec)   p_kst 1.397590e-04   p_cons 3.514161e-01   p_joint 1.397590e-04

Joint ci ratio: 1.481517e-01	ci left: 1.298874e-04	ci right 1.508602e-04	k: 699	n:4990000
Cons ci ratio: 2.384077e-03	ci left: 3.509841e-01	ci right 3.518221e-01	k: 1753501	n:4990000
KS ci ratio: 1.481517e-01	ci left: 1.298874e-04	ci right 1.508602e-04	k: 699	n:4990000
KALRN   4990000 perm   12585 sec   (397 perm/sec)   p_kst 1.400802e-04   p_cons 3.514030e-01   p_joint 1.400802e-04

Joint ci ratio: 1.478352e-01	ci left: 1.302054e-04	ci right 1.511807e-04	k: 702	n:5000000
Cons ci ratio: 2.381654e-03	ci left: 3.509917e-01	ci right 3.518288e-01	k: 1757051	n:5000000
KS ci ratio: 1.478352e-01	ci left: 1.302054e-04	ci right 1.511807e-04	k: 702	n:5000000
KALRN   5000000 perm   12632 sec   (396 perm/sec)   p_kst 1.404000e-04   p_cons 3.514102e-01   p_joint 1.404000e-04

Outputting figure to mutsig2_images.part000000000088/KALRN.2_9357_5000000_0.0001404_0.35141_0.0001404.png
                gene_name: KALRN
               theta_stop: 0.15 
                    nperm: 5000000 
                     p_ks: 0.00014 
        ci_ks_bounds_left: 0.00013 
       ci_ks_bounds_right: 0.00015 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.00014 
     ci_joint_bounds_left: 0.00013 
    ci_joint_bounds_right: 0.00015 

Current progress: 12 percent done.
KANK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.946939e-02	ci left: 4.866526e-01	ci right 5.063494e-01	k: 4965	n:10000
Cons ci ratio: 8.634954e-03	ci left: 9.495015e-01	ci right 9.578316e-01	k: 9538	n:10000
KS ci ratio: 1.523350e-01	ci left: 5.735153e-02	ci right 6.690551e-02	k: 620	n:10000
KANK1   10000 perm   2 sec   (4424 perm/sec)   p_kst 6.200000e-02   p_cons 9.538000e-01   p_joint 4.965000e-01

Joint ci ratio: 4.393587e-02	ci left: 2.784028e-01	ci right 2.909598e-01	k: 5693	n:20000
Cons ci ratio: 6.598945e-03	ci left: 9.431881e-01	ci right 9.494814e-01	k: 18928	n:20000
KS ci ratio: 1.080911e-01	ci left: 5.835555e-02	ci right 6.507257e-02	k: 1233	n:20000
KANK1   20000 perm   5 sec   (4042 perm/sec)   p_kst 6.165000e-02   p_cons 9.464000e-01   p_joint 2.846500e-01

Joint ci ratio: 3.898149e-02	ci left: 2.471609e-01	ci right 2.570205e-01	k: 7562	n:30000
Cons ci ratio: 5.378511e-03	ci left: 9.439615e-01	ci right 9.490849e-01	k: 28397	n:30000
KS ci ratio: 8.942081e-02	ci left: 5.750183e-02	ci right 6.291706e-02	k: 1805	n:30000
KANK1   30000 perm   8 sec   (3820 perm/sec)   p_kst 6.016667e-02   p_cons 9.465667e-01   p_joint 2.520667e-01

Outputting figure to mutsig2_images.part000000000088/KANK1.2_4103_30000_0.060167_0.94657_0.25207.png
                gene_name: KANK1
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 25 percent done.
KANK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.163120e-02	ci left: 5.959416e-01	ci right 6.151968e-01	k: 6056	n:10000
Cons ci ratio: 4.427870e-02	ci left: 4.295415e-01	ci right 4.490938e-01	k: 4393	n:10000
KS ci ratio: 3.811184e-02	ci left: 5.041511e-01	ci right 5.238407e-01	k: 5140	n:10000
KANK4   10000 perm   2 sec   (5355 perm/sec)   p_kst 5.140000e-01   p_cons 4.393000e-01   p_joint 6.056000e-01

Outputting figure to mutsig2_images.part000000000088/KANK4.2_3024_10000_0.514_0.4393_0.6056.png
                gene_name: KANK4
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 38 percent done.
KAT2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.181215e+00	ci left: 4.796397e-04	ci right 1.838264e-03	k: 10	n:10000
Cons ci ratio: 4.134564e-02	ci left: 4.634731e-01	ci right 4.831424e-01	k: 4733	n:10000
KS ci ratio: 1.959510e+00	ci left: 6.187149e-05	ci right 8.764745e-04	k: 3	n:10000
KAT2A   10000 perm   2 sec   (5689 perm/sec)   p_kst 3.000000e-04   p_cons 4.733000e-01   p_joint 1.000000e-03

Joint ci ratio: 1.385617e+00	ci left: 1.407294e-04	ci right 7.210000e-04	k: 7	n:20000
Cons ci ratio: 2.952110e-02	ci left: 4.615642e-01	ci right 4.754449e-01	k: 9370	n:20000
KS ci ratio: 1.481324e+00	ci left: 1.101024e-04	ci right 6.528585e-04	k: 6	n:20000
KAT2A   20000 perm   4 sec   (5040 perm/sec)   p_kst 3.000000e-04   p_cons 4.685000e-01   p_joint 3.500000e-04

Joint ci ratio: 6.117725e-01	ci left: 9.527184e-04	ci right 1.815184e-03	k: 40	n:30000
Cons ci ratio: 2.412390e-02	ci left: 4.624402e-01	ci right 4.737659e-01	k: 14043	n:30000
KS ci ratio: 9.797223e-01	ci left: 2.798723e-04	ci right 8.245401e-04	k: 15	n:30000
KAT2A   30000 perm   6 sec   (4801 perm/sec)   p_kst 5.000000e-04   p_cons 4.681000e-01   p_joint 1.333333e-03

Joint ci ratio: 3.666135e-01	ci left: 2.328750e-03	ci right 3.395458e-03	k: 113	n:40000
Cons ci ratio: 2.083983e-02	ci left: 4.644492e-01	ci right 4.742553e-01	k: 18774	n:40000
KS ci ratio: 7.999166e-01	ci left: 3.645345e-04	ci right 8.626582e-04	k: 23	n:40000
KAT2A   40000 perm   9 sec   (4638 perm/sec)   p_kst 5.750000e-04   p_cons 4.693500e-01   p_joint 2.825000e-03

Joint ci ratio: 4.896814e-01	ci left: 9.683502e-04	ci right 1.611803e-03	k: 63	n:50000
Cons ci ratio: 1.866945e-02	ci left: 4.641780e-01	ci right 4.729457e-01	k: 23428	n:50000
KS ci ratio: 7.685677e-01	ci left: 3.235989e-04	ci right 7.380108e-04	k: 25	n:50000
KAT2A   50000 perm   11 sec   (4499 perm/sec)   p_kst 5.000000e-04   p_cons 4.685600e-01   p_joint 1.260000e-03

Joint ci ratio: 4.223979e-01	ci left: 1.131735e-03	ci right 1.751437e-03	k: 85	n:60000
Cons ci ratio: 1.712501e-02	ci left: 4.621685e-01	ci right 4.701681e-01	k: 27970	n:60000
KS ci ratio: 7.038650e-01	ci left: 3.373725e-04	ci right 7.137048e-04	k: 30	n:60000
KAT2A   60000 perm   14 sec   (4376 perm/sec)   p_kst 5.000000e-04   p_cons 4.661667e-01   p_joint 1.416667e-03

Joint ci ratio: 6.531607e-01	ci left: 3.482923e-04	ci right 6.953110e-04	k: 35	n:70000
Cons ci ratio: 1.582550e-02	ci left: 4.633841e-01	ci right 4.707901e-01	k: 32696	n:70000
KS ci ratio: 6.531607e-01	ci left: 3.482923e-04	ci right 6.953110e-04	k: 35	n:70000
KAT2A   70000 perm   16 sec   (4268 perm/sec)   p_kst 5.000000e-04   p_cons 4.670857e-01   p_joint 5.000000e-04

Joint ci ratio: 6.047066e-01	ci left: 3.678032e-04	ci right 6.952006e-04	k: 41	n:80000
Cons ci ratio: 1.480562e-02	ci left: 4.635503e-01	ci right 4.704771e-01	k: 37361	n:80000
KS ci ratio: 6.047066e-01	ci left: 3.678032e-04	ci right 6.952006e-04	k: 41	n:80000
KAT2A   80000 perm   19 sec   (4173 perm/sec)   p_kst 5.125000e-04   p_cons 4.670125e-01   p_joint 5.125000e-04

Joint ci ratio: 5.976483e-01	ci left: 3.363523e-04	ci right 6.307460e-04	k: 42	n:90000
Cons ci ratio: 1.396642e-02	ci left: 4.634806e-01	ci right 4.700104e-01	k: 42007	n:90000
KS ci ratio: 5.976483e-01	ci left: 3.363523e-04	ci right 6.307460e-04	k: 42	n:90000
KAT2A   90000 perm   22 sec   (4086 perm/sec)   p_kst 4.666667e-04   p_cons 4.667444e-01   p_joint 4.666667e-04

Joint ci ratio: 5.778366e-01	ci left: 3.282514e-04	ci right 6.020896e-04	k: 45	n:100000
Cons ci ratio: 1.327650e-02	ci left: 4.626443e-01	ci right 4.688376e-01	k: 46574	n:100000
KS ci ratio: 5.778366e-01	ci left: 3.282514e-04	ci right 6.020896e-04	k: 45	n:100000
KAT2A   100000 perm   25 sec   (4009 perm/sec)   p_kst 4.500000e-04   p_cons 4.657400e-01   p_joint 4.500000e-04

Joint ci ratio: 5.434752e-01	ci left: 3.452266e-04	ci right 6.095517e-04	k: 51	n:110000
Cons ci ratio: 1.265459e-02	ci left: 4.629485e-01	ci right 4.688533e-01	k: 51249	n:110000
KS ci ratio: 5.434752e-01	ci left: 3.452266e-04	ci right 6.095517e-04	k: 51	n:110000
KAT2A   110000 perm   28 sec   (3923 perm/sec)   p_kst 4.636364e-04   p_cons 4.659000e-01   p_joint 4.636364e-04

Joint ci ratio: 5.190912e-01	ci left: 3.525336e-04	ci right 6.059633e-04	k: 56	n:120000
Cons ci ratio: 1.211323e-02	ci left: 4.631826e-01	ci right 4.688357e-01	k: 55921	n:120000
KS ci ratio: 5.190912e-01	ci left: 3.525336e-04	ci right 6.059633e-04	k: 56	n:120000
KAT2A   120000 perm   31 sec   (3850 perm/sec)   p_kst 4.666667e-04   p_cons 4.660083e-01   p_joint 4.666667e-04

Joint ci ratio: 4.977199e-01	ci left: 3.589428e-04	ci right 6.027063e-04	k: 61	n:130000
Cons ci ratio: 1.164488e-02	ci left: 4.630007e-01	ci right 4.684316e-01	k: 60543	n:130000
KS ci ratio: 4.977199e-01	ci left: 3.589428e-04	ci right 6.027063e-04	k: 61	n:130000
KAT2A   130000 perm   34 sec   (3782 perm/sec)   p_kst 4.692308e-04   p_cons 4.657154e-01   p_joint 4.692308e-04

Joint ci ratio: 4.787879e-01	ci left: 3.646210e-04	ci right 5.997342e-04	k: 66	n:140000
Cons ci ratio: 1.121488e-02	ci left: 4.633841e-01	ci right 4.686173e-01	k: 65240	n:140000
KS ci ratio: 4.787879e-01	ci left: 3.646210e-04	ci right 5.997342e-04	k: 66	n:140000
KAT2A   140000 perm   38 sec   (3719 perm/sec)   p_kst 4.714286e-04   p_cons 4.660000e-01   p_joint 4.714286e-04

Joint ci ratio: 4.718024e-01	ci left: 3.520477e-04	ci right 5.746731e-04	k: 68	n:150000
Cons ci ratio: 1.083244e-02	ci left: 4.635729e-01	ci right 4.686284e-01	k: 69915	n:150000
KS ci ratio: 4.718024e-01	ci left: 3.520477e-04	ci right 5.746731e-04	k: 68	n:150000
KAT2A   150000 perm   41 sec   (3661 perm/sec)   p_kst 4.533333e-04   p_cons 4.661000e-01   p_joint 4.533333e-04

Joint ci ratio: 4.437430e-01	ci left: 3.798131e-04	ci right 6.014438e-04	k: 77	n:160000
Cons ci ratio: 1.049400e-02	ci left: 4.633908e-01	ci right 4.682855e-01	k: 74534	n:160000
KS ci ratio: 4.437430e-01	ci left: 3.798131e-04	ci right 6.014438e-04	k: 77	n:160000
KAT2A   160000 perm   44 sec   (3603 perm/sec)   p_kst 4.812500e-04   p_cons 4.658375e-01   p_joint 4.812500e-04

Joint ci ratio: 4.381649e-01	ci left: 3.679287e-04	ci right 5.791290e-04	k: 79	n:170000
Cons ci ratio: 1.017928e-02	ci left: 4.635323e-01	ci right 4.682807e-01	k: 79204	n:170000
KS ci ratio: 4.381649e-01	ci left: 3.679287e-04	ci right 5.791290e-04	k: 79	n:170000
KAT2A   170000 perm   48 sec   (3549 perm/sec)   p_kst 4.647059e-04   p_cons 4.659059e-01   p_joint 4.647059e-04

Joint ci ratio: 4.250821e-01	ci left: 3.722482e-04	ci right 5.777330e-04	k: 84	n:180000
Cons ci ratio: 9.894706e-03	ci left: 4.634878e-01	ci right 4.681022e-01	k: 83843	n:180000
KS ci ratio: 4.250821e-01	ci left: 3.722482e-04	ci right 5.777330e-04	k: 84	n:180000
KAT2A   180000 perm   52 sec   (3495 perm/sec)   p_kst 4.666667e-04   p_cons 4.657944e-01   p_joint 4.666667e-04

Joint ci ratio: 4.108282e-01	ci left: 3.809147e-04	ci right 5.822067e-04	k: 90	n:190000
Cons ci ratio: 9.632632e-03	ci left: 4.634550e-01	ci right 4.679461e-01	k: 88483	n:190000
KS ci ratio: 4.108282e-01	ci left: 3.809147e-04	ci right 5.822067e-04	k: 90	n:190000
KAT2A   190000 perm   55 sec   (3444 perm/sec)   p_kst 4.736842e-04   p_cons 4.657000e-01   p_joint 4.736842e-04

Joint ci ratio: 4.042211e-01	ci left: 3.753309e-04	ci right 5.696266e-04	k: 93	n:200000
Cons ci ratio: 9.390903e-03	ci left: 4.633969e-01	ci right 4.677741e-01	k: 93117	n:200000
KS ci ratio: 4.042211e-01	ci left: 3.753309e-04	ci right 5.696266e-04	k: 93	n:200000
KAT2A   200000 perm   59 sec   (3392 perm/sec)   p_kst 4.650000e-04   p_cons 4.655850e-01   p_joint 4.650000e-04

Joint ci ratio: 3.958864e-01	ci left: 3.745891e-04	ci right 5.634560e-04	k: 97	n:210000
Cons ci ratio: 9.165713e-03	ci left: 4.633885e-01	ci right 4.676601e-01	k: 97760	n:210000
KS ci ratio: 3.958864e-01	ci left: 3.745891e-04	ci right 5.634560e-04	k: 97	n:210000
KAT2A   210000 perm   63 sec   (3344 perm/sec)   p_kst 4.619048e-04   p_cons 4.655238e-01   p_joint 4.619048e-04

Joint ci ratio: 3.880470e-01	ci left: 3.739522e-04	ci right 5.578095e-04	k: 101	n:220000
Cons ci ratio: 8.962203e-03	ci left: 4.630367e-01	ci right 4.672097e-01	k: 102327	n:220000
KS ci ratio: 3.880470e-01	ci left: 3.739522e-04	ci right 5.578095e-04	k: 101	n:220000
KAT2A   220000 perm   67 sec   (3297 perm/sec)   p_kst 4.590909e-04   p_cons 4.651227e-01   p_joint 4.590909e-04

Joint ci ratio: 3.824647e-01	ci left: 3.694733e-04	ci right 5.478582e-04	k: 104	n:230000
Cons ci ratio: 8.764079e-03	ci left: 4.631468e-01	ci right 4.672280e-01	k: 106993	n:230000
KS ci ratio: 3.824647e-01	ci left: 3.694733e-04	ci right 5.478582e-04	k: 104	n:230000
KAT2A   230000 perm   71 sec   (3250 perm/sec)   p_kst 4.521739e-04   p_cons 4.651870e-01   p_joint 4.521739e-04

Joint ci ratio: 3.771165e-01	ci left: 3.653851e-04	ci right 5.387189e-04	k: 107	n:240000
Cons ci ratio: 8.581053e-03	ci left: 4.631028e-01	ci right 4.670980e-01	k: 111624	n:240000
KS ci ratio: 3.771165e-01	ci left: 3.653851e-04	ci right 5.387189e-04	k: 107	n:240000
KAT2A   240000 perm   75 sec   (3205 perm/sec)   p_kst 4.458333e-04   p_cons 4.651000e-01   p_joint 4.458333e-04

Joint ci ratio: 3.736744e-01	ci left: 3.580146e-04	ci right 5.259221e-04	k: 109	n:250000
Cons ci ratio: 8.406332e-03	ci left: 4.632232e-01	ci right 4.671376e-01	k: 116295	n:250000
KS ci ratio: 3.736744e-01	ci left: 3.580146e-04	ci right 5.259221e-04	k: 109	n:250000
KAT2A   250000 perm   79 sec   (3160 perm/sec)   p_kst 4.360000e-04   p_cons 4.651800e-01   p_joint 4.360000e-04

Joint ci ratio: 3.670604e-01	ci left: 3.581976e-04	ci right 5.225046e-04	k: 113	n:260000
Cons ci ratio: 8.244987e-03	ci left: 4.631467e-01	ci right 4.669849e-01	k: 120917	n:260000
KS ci ratio: 3.670604e-01	ci left: 3.581976e-04	ci right 5.225046e-04	k: 113	n:260000
KAT2A   260000 perm   83 sec   (3114 perm/sec)   p_kst 4.346154e-04   p_cons 4.650654e-01   p_joint 4.346154e-04

Joint ci ratio: 3.519449e-01	ci left: 3.786251e-04	ci right 5.435184e-04	k: 123	n:270000
Cons ci ratio: 8.090843e-03	ci left: 4.631838e-01	ci right 4.669503e-01	k: 125568	n:270000
KS ci ratio: 3.519449e-01	ci left: 3.786251e-04	ci right 5.435184e-04	k: 123	n:270000
KAT2A   270000 perm   88 sec   (3072 perm/sec)   p_kst 4.555556e-04   p_cons 4.650667e-01   p_joint 4.555556e-04

Joint ci ratio: 3.464025e-01	ci left: 3.781357e-04	ci right 5.396407e-04	k: 127	n:280000
Cons ci ratio: 7.945831e-03	ci left: 4.631690e-01	ci right 4.668675e-01	k: 130205	n:280000
KS ci ratio: 3.464025e-01	ci left: 3.781357e-04	ci right 5.396407e-04	k: 127	n:280000
KAT2A   280000 perm   92 sec   (3033 perm/sec)   p_kst 4.535714e-04   p_cons 4.650179e-01   p_joint 4.535714e-04

Joint ci ratio: 3.373008e-01	ci left: 3.871630e-04	ci right 5.472339e-04	k: 134	n:290000
Cons ci ratio: 7.805101e-03	ci left: 4.633626e-01	ci right 4.669967e-01	k: 134902	n:290000
KS ci ratio: 3.373008e-01	ci left: 3.871630e-04	ci right 5.472339e-04	k: 134	n:290000
KAT2A   290000 perm   97 sec   (2995 perm/sec)   p_kst 4.620690e-04   p_cons 4.651793e-01   p_joint 4.620690e-04

Joint ci ratio: 3.254591e-01	ci left: 4.048193e-04	ci right 5.650877e-04	k: 144	n:300000
Cons ci ratio: 7.677144e-03	ci left: 4.631839e-01	ci right 4.667568e-01	k: 139491	n:300000
KS ci ratio: 3.254591e-01	ci left: 4.048193e-04	ci right 5.650877e-04	k: 144	n:300000
KAT2A   300000 perm   101 sec   (2958 perm/sec)   p_kst 4.800000e-04   p_cons 4.649700e-01   p_joint 4.800000e-04

Joint ci ratio: 3.199887e-01	ci left: 4.065833e-04	ci right 5.642900e-04	k: 149	n:310000
Cons ci ratio: 7.551850e-03	ci left: 4.632429e-01	ci right 4.667577e-01	k: 144150	n:310000
KS ci ratio: 3.199887e-01	ci left: 4.065833e-04	ci right 5.642900e-04	k: 149	n:310000
KAT2A   310000 perm   107 sec   (2899 perm/sec)   p_kst 4.806452e-04   p_cons 4.650000e-01   p_joint 4.806452e-04

Joint ci ratio: 3.107985e-01	ci left: 4.197774e-04	ci right 5.769988e-04	k: 158	n:320000
Cons ci ratio: 7.438241e-03	ci left: 4.629145e-01	ci right 4.663737e-01	k: 148686	n:320000
KS ci ratio: 3.107985e-01	ci left: 4.197774e-04	ci right 5.769988e-04	k: 158	n:320000
KAT2A   320000 perm   112 sec   (2865 perm/sec)   p_kst 4.937500e-04   p_cons 4.646438e-01   p_joint 4.937500e-04

Joint ci ratio: 3.069618e-01	ci left: 4.182387e-04	ci right 5.725718e-04	k: 162	n:330000
Cons ci ratio: 7.330184e-03	ci left: 4.625669e-01	ci right 4.659731e-01	k: 153209	n:330000
KS ci ratio: 3.069618e-01	ci left: 4.182387e-04	ci right 5.725718e-04	k: 162	n:330000
KAT2A   330000 perm   117 sec   (2827 perm/sec)   p_kst 4.909091e-04   p_cons 4.642697e-01   p_joint 4.909091e-04

Joint ci ratio: 3.023594e-01	ci left: 4.195195e-04	ci right 5.715580e-04	k: 167	n:340000
Cons ci ratio: 7.220888e-03	ci left: 4.626401e-01	ci right 4.659958e-01	k: 157868	n:340000
KS ci ratio: 3.023594e-01	ci left: 4.195195e-04	ci right 5.715580e-04	k: 167	n:340000
KAT2A   340000 perm   122 sec   (2792 perm/sec)   p_kst 4.911765e-04   p_cons 4.643176e-01   p_joint 4.911765e-04

Joint ci ratio: 2.979580e-01	ci left: 4.207433e-04	ci right 5.705860e-04	k: 172	n:350000
Cons ci ratio: 7.117483e-03	ci left: 4.626295e-01	ci right 4.659368e-01	k: 162499	n:350000
KS ci ratio: 2.979580e-01	ci left: 4.207433e-04	ci right 5.705860e-04	k: 172	n:350000
KAT2A   350000 perm   127 sec   (2757 perm/sec)   p_kst 4.914286e-04   p_cons 4.642829e-01   p_joint 4.914286e-04

Joint ci ratio: 2.954085e-01	ci left: 4.167690e-04	ci right 5.636883e-04	k: 175	n:360000
Cons ci ratio: 7.015420e-03	ci left: 4.628308e-01	ci right 4.660920e-01	k: 167206	n:360000
KS ci ratio: 2.954085e-01	ci left: 4.167690e-04	ci right 5.636883e-04	k: 175	n:360000
KAT2A   360000 perm   132 sec   (2725 perm/sec)   p_kst 4.861111e-04   p_cons 4.644611e-01   p_joint 4.861111e-04

Joint ci ratio: 2.937453e-01	ci left: 4.105108e-04	ci right 5.542575e-04	k: 177	n:370000
Cons ci ratio: 6.919202e-03	ci left: 4.629081e-01	ci right 4.661249e-01	k: 171871	n:370000
KS ci ratio: 2.937453e-01	ci left: 4.105108e-04	ci right 5.542575e-04	k: 177	n:370000
KAT2A   370000 perm   137 sec   (2695 perm/sec)   p_kst 4.783784e-04   p_cons 4.645162e-01   p_joint 4.783784e-04

Joint ci ratio: 2.904998e-01	ci left: 4.094630e-04	ci right 5.509673e-04	k: 181	n:380000
Cons ci ratio: 6.827812e-03	ci left: 4.629106e-01	ci right 4.660847e-01	k: 176509	n:380000
KS ci ratio: 2.904998e-01	ci left: 4.094630e-04	ci right 5.509673e-04	k: 181	n:380000
KAT2A   380000 perm   143 sec   (2665 perm/sec)   p_kst 4.763158e-04   p_cons 4.644974e-01   p_joint 4.763158e-04

Joint ci ratio: 2.828316e-01	ci left: 4.227623e-04	ci right 5.643186e-04	k: 191	n:390000
Cons ci ratio: 6.741097e-03	ci left: 4.628286e-01	ci right 4.659617e-01	k: 181114	n:390000
KS ci ratio: 2.828316e-01	ci left: 4.227623e-04	ci right 5.643186e-04	k: 191	n:390000
KAT2A   390000 perm   148 sec   (2636 perm/sec)   p_kst 4.897436e-04   p_cons 4.643949e-01   p_joint 4.897436e-04

Joint ci ratio: 2.785130e-01	ci left: 4.261377e-04	ci right 5.662635e-04	k: 197	n:400000
Cons ci ratio: 6.654527e-03	ci left: 4.629809e-01	ci right 4.660746e-01	k: 185811	n:400000
KS ci ratio: 2.785130e-01	ci left: 4.261377e-04	ci right 5.662635e-04	k: 197	n:400000
KAT2A   400000 perm   154 sec   (2606 perm/sec)   p_kst 4.925000e-04   p_cons 4.645275e-01   p_joint 4.925000e-04

Joint ci ratio: 2.730504e-01	ci left: 4.339075e-04	ci right 5.733098e-04	k: 205	n:410000
Cons ci ratio: 6.571948e-03	ci left: 4.630700e-01	ci right 4.661257e-01	k: 190485	n:410000
KS ci ratio: 2.730504e-01	ci left: 4.339075e-04	ci right 5.733098e-04	k: 205	n:410000
KAT2A   410000 perm   159 sec   (2577 perm/sec)   p_kst 5.000000e-04   p_cons 4.645976e-01   p_joint 5.000000e-04

Joint ci ratio: 2.717355e-01	ci left: 4.280129e-04	ci right 5.647462e-04	k: 207	n:420000
Cons ci ratio: 6.493674e-03	ci left: 4.630550e-01	ci right 4.660741e-01	k: 195117	n:420000
KS ci ratio: 2.717355e-01	ci left: 4.280129e-04	ci right 5.647462e-04	k: 207	n:420000
KAT2A   420000 perm   165 sec   (2548 perm/sec)   p_kst 4.928571e-04   p_cons 4.645643e-01   p_joint 4.928571e-04

Joint ci ratio: 2.672746e-01	ci left: 4.332385e-04	ci right 5.689886e-04	k: 214	n:430000
Cons ci ratio: 6.418012e-03	ci left: 4.630502e-01	ci right 4.660340e-01	k: 199753	n:430000
KS ci ratio: 2.672746e-01	ci left: 4.332385e-04	ci right 5.689886e-04	k: 214	n:430000
KAT2A   430000 perm   172 sec   (2505 perm/sec)   p_kst 4.976744e-04   p_cons 4.645419e-01   p_joint 4.976744e-04

Joint ci ratio: 2.642200e-01	ci left: 4.339989e-04	ci right 5.681759e-04	k: 219	n:440000
Cons ci ratio: 6.344036e-03	ci left: 4.631163e-01	ci right 4.660659e-01	k: 204420	n:440000
KS ci ratio: 2.642200e-01	ci left: 4.339989e-04	ci right 5.681759e-04	k: 219	n:440000
KAT2A   440000 perm   178 sec   (2479 perm/sec)   p_kst 4.977273e-04   p_cons 4.645909e-01   p_joint 4.977273e-04

Joint ci ratio: 2.618505e-01	ci left: 4.326572e-04	ci right 5.650235e-04	k: 223	n:450000
Cons ci ratio: 6.274578e-03	ci left: 4.630197e-01	ci right 4.659363e-01	k: 209015	n:450000
KS ci ratio: 2.618505e-01	ci left: 4.326572e-04	ci right 5.650235e-04	k: 223	n:450000
KAT2A   450000 perm   183 sec   (2454 perm/sec)   p_kst 4.955556e-04   p_cons 4.644778e-01   p_joint 4.955556e-04

Joint ci ratio: 2.595437e-01	ci left: 4.313791e-04	ci right 5.620031e-04	k: 227	n:460000
Cons ci ratio: 6.207080e-03	ci left: 4.629492e-01	ci right 4.658338e-01	k: 213620	n:460000
KS ci ratio: 2.595437e-01	ci left: 4.313791e-04	ci right 5.620031e-04	k: 227	n:460000
KAT2A   460000 perm   189 sec   (2430 perm/sec)   p_kst 4.934783e-04   p_cons 4.643913e-01   p_joint 4.934783e-04

Joint ci ratio: 2.561943e-01	ci left: 4.341418e-04	ci right 5.636347e-04	k: 233	n:470000
Cons ci ratio: 6.138538e-03	ci left: 4.631393e-01	ci right 4.659931e-01	k: 218346	n:470000
KS ci ratio: 2.561943e-01	ci left: 4.341418e-04	ci right 5.636347e-04	k: 233	n:470000
KAT2A   470000 perm   195 sec   (2404 perm/sec)   p_kst 4.957447e-04   p_cons 4.645660e-01   p_joint 4.957447e-04

Joint ci ratio: 2.529714e-01	ci left: 4.367997e-04	ci right 5.651881e-04	k: 239	n:480000
Cons ci ratio: 6.074962e-03	ci left: 4.630966e-01	ci right 4.659205e-01	k: 222964	n:480000
KS ci ratio: 2.529714e-01	ci left: 4.367997e-04	ci right 5.651881e-04	k: 239	n:480000
KAT2A   480000 perm   202 sec   (2379 perm/sec)   p_kst 4.979167e-04   p_cons 4.645083e-01   p_joint 4.979167e-04

Joint ci ratio: 2.514055e-01	ci left: 4.336209e-04	ci right 5.601624e-04	k: 242	n:490000
Cons ci ratio: 6.012162e-03	ci left: 4.631517e-01	ci right 4.659467e-01	k: 227629	n:490000
KS ci ratio: 2.514055e-01	ci left: 4.336209e-04	ci right 5.601624e-04	k: 242	n:490000
KAT2A   490000 perm   208 sec   (2355 perm/sec)   p_kst 4.938776e-04   p_cons 4.645490e-01   p_joint 4.938776e-04

Joint ci ratio: 2.483578e-01	ci left: 4.361971e-04	ci right 5.617089e-04	k: 248	n:500000
Cons ci ratio: 5.951701e-03	ci left: 4.631688e-01	ci right 4.659356e-01	k: 232276	n:500000
KS ci ratio: 2.483578e-01	ci left: 4.361971e-04	ci right 5.617089e-04	k: 248	n:500000
KAT2A   500000 perm   214 sec   (2332 perm/sec)   p_kst 4.960000e-04   p_cons 4.645520e-01   p_joint 4.960000e-04

Joint ci ratio: 2.439866e-01	ci left: 4.442030e-04	ci right 5.694282e-04	k: 257	n:510000
Cons ci ratio: 5.892634e-03	ci left: 4.632187e-01	ci right 4.659582e-01	k: 236940	n:510000
KS ci ratio: 2.439866e-01	ci left: 4.442030e-04	ci right 5.694282e-04	k: 257	n:510000
KAT2A   510000 perm   222 sec   (2300 perm/sec)   p_kst 5.039216e-04   p_cons 4.645882e-01   p_joint 5.039216e-04

Joint ci ratio: 2.416562e-01	ci left: 4.446910e-04	ci right 5.686769e-04	k: 262	n:520000
Cons ci ratio: 5.836666e-03	ci left: 4.631494e-01	ci right 4.658625e-01	k: 241543	n:520000
KS ci ratio: 2.416562e-01	ci left: 4.446910e-04	ci right 5.686769e-04	k: 262	n:520000
KAT2A   520000 perm   228 sec   (2278 perm/sec)   p_kst 5.038462e-04   p_cons 4.645058e-01   p_joint 5.038462e-04

Joint ci ratio: 2.398394e-01	ci left: 4.433925e-04	ci right 5.659488e-04	k: 266	n:530000
Cons ci ratio: 5.778427e-03	ci left: 4.634131e-01	ci right 4.661005e-01	k: 246321	n:530000
KS ci ratio: 2.398394e-01	ci left: 4.433925e-04	ci right 5.659488e-04	k: 266	n:530000
KAT2A   530000 perm   235 sec   (2257 perm/sec)   p_kst 5.018868e-04   p_cons 4.647566e-01   p_joint 5.018868e-04

Joint ci ratio: 2.376248e-01	ci left: 4.438870e-04	ci right 5.652803e-04	k: 271	n:540000
Cons ci ratio: 5.725389e-03	ci left: 4.633635e-01	ci right 4.660258e-01	k: 250935	n:540000
KS ci ratio: 2.376248e-01	ci left: 4.438870e-04	ci right 5.652803e-04	k: 271	n:540000
KAT2A   540000 perm   242 sec   (2234 perm/sec)   p_kst 5.018519e-04   p_cons 4.646944e-01   p_joint 5.018519e-04

Joint ci ratio: 2.367566e-01	ci left: 4.392365e-04	ci right 5.588547e-04	k: 273	n:550000
Cons ci ratio: 5.673909e-03	ci left: 4.633048e-01	ci right 4.659428e-01	k: 255543	n:550000
KS ci ratio: 2.367566e-01	ci left: 4.392365e-04	ci right 5.588547e-04	k: 273	n:550000
KAT2A   550000 perm   248 sec   (2214 perm/sec)   p_kst 4.963636e-04   p_cons 4.646236e-01   p_joint 4.963636e-04

Joint ci ratio: 2.354715e-01	ci left: 4.364331e-04	ci right 5.545488e-04	k: 276	n:560000
Cons ci ratio: 5.621412e-03	ci left: 4.634591e-01	ci right 4.660734e-01	k: 260269	n:560000
KS ci ratio: 2.354715e-01	ci left: 4.364331e-04	ci right 5.545488e-04	k: 276	n:560000
KAT2A   560000 perm   255 sec   (2194 perm/sec)   p_kst 4.928571e-04   p_cons 4.647661e-01   p_joint 4.928571e-04

Joint ci ratio: 2.329618e-01	ci left: 4.386852e-04	ci right 5.559626e-04	k: 282	n:570000
Cons ci ratio: 5.572603e-03	ci left: 4.634063e-01	ci right 4.659976e-01	k: 264880	n:570000
KS ci ratio: 2.329618e-01	ci left: 4.386852e-04	ci right 5.559626e-04	k: 282	n:570000
KAT2A   570000 perm   262 sec   (2174 perm/sec)   p_kst 4.947368e-04   p_cons 4.647018e-01   p_joint 4.947368e-04

Joint ci ratio: 2.309307e-01	ci left: 4.392414e-04	ci right 5.554978e-04	k: 287	n:580000
Cons ci ratio: 5.522403e-03	ci left: 4.635933e-01	ci right 4.661622e-01	k: 269629	n:580000
KS ci ratio: 2.309307e-01	ci left: 4.392414e-04	ci right 5.554978e-04	k: 287	n:580000
KAT2A   580000 perm   269 sec   (2154 perm/sec)   p_kst 4.948276e-04   p_cons 4.648776e-01   p_joint 4.948276e-04

Joint ci ratio: 2.293437e-01	ci left: 4.381854e-04	ci right 5.532524e-04	k: 291	n:590000
Cons ci ratio: 5.475698e-03	ci left: 4.635775e-01	ci right 4.661245e-01	k: 274262	n:590000
KS ci ratio: 2.293437e-01	ci left: 4.381854e-04	ci right 5.532524e-04	k: 291	n:590000
KAT2A   590000 perm   276 sec   (2135 perm/sec)   p_kst 4.932203e-04   p_cons 4.648508e-01   p_joint 4.932203e-04

Joint ci ratio: 2.274050e-01	ci left: 4.387390e-04	ci right 5.528408e-04	k: 296	n:600000
Cons ci ratio: 5.428521e-03	ci left: 4.637123e-01	ci right 4.662380e-01	k: 278985	n:600000
KS ci ratio: 2.274050e-01	ci left: 4.387390e-04	ci right 5.528408e-04	k: 296	n:600000
KAT2A   600000 perm   284 sec   (2113 perm/sec)   p_kst 4.933333e-04   p_cons 4.649750e-01   p_joint 4.933333e-04

Joint ci ratio: 2.262655e-01	ci left: 4.361851e-04	ci right 5.489750e-04	k: 299	n:610000
Cons ci ratio: 5.384475e-03	ci left: 4.636641e-01	ci right 4.661690e-01	k: 283599	n:610000
KS ci ratio: 2.262655e-01	ci left: 4.361851e-04	ci right 5.489750e-04	k: 299	n:610000
KAT2A   610000 perm   291 sec   (2093 perm/sec)   p_kst 4.901639e-04   p_cons 4.649164e-01   p_joint 4.901639e-04

Joint ci ratio: 2.247721e-01	ci left: 4.352370e-04	ci right 5.469360e-04	k: 303	n:620000
Cons ci ratio: 5.339511e-03	ci left: 4.638014e-01	ci right 4.662860e-01	k: 288327	n:620000
KS ci ratio: 2.247721e-01	ci left: 4.352370e-04	ci right 5.469360e-04	k: 303	n:620000
KAT2A   620000 perm   299 sec   (2075 perm/sec)   p_kst 4.887097e-04   p_cons 4.650435e-01   p_joint 4.887097e-04

Joint ci ratio: 2.225861e-01	ci left: 4.373187e-04	ci right 5.483110e-04	k: 309	n:630000
Cons ci ratio: 5.296245e-03	ci left: 4.638788e-01	ci right 4.663437e-01	k: 293020	n:630000
KS ci ratio: 2.225861e-01	ci left: 4.373187e-04	ci right 5.483110e-04	k: 309	n:630000
KAT2A   630000 perm   306 sec   (2057 perm/sec)   p_kst 4.904762e-04   p_cons 4.651111e-01   p_joint 4.904762e-04

Joint ci ratio: 2.197679e-01	ci left: 4.422933e-04	ci right 5.529348e-04	k: 317	n:640000
Cons ci ratio: 5.255087e-03	ci left: 4.638524e-01	ci right 4.662979e-01	k: 297648	n:640000
KS ci ratio: 2.197679e-01	ci left: 4.422933e-04	ci right 5.529348e-04	k: 317	n:640000
KAT2A   640000 perm   314 sec   (2039 perm/sec)   p_kst 4.953125e-04   p_cons 4.650750e-01   p_joint 4.953125e-04

Joint ci ratio: 2.190805e-01	ci left: 4.383965e-04	ci right 5.476740e-04	k: 319	n:650000
Cons ci ratio: 5.215874e-03	ci left: 4.637315e-01	ci right 4.661581e-01	k: 302214	n:650000
KS ci ratio: 2.190805e-01	ci left: 4.383965e-04	ci right 5.476740e-04	k: 319	n:650000
KAT2A   650000 perm   322 sec   (2019 perm/sec)   p_kst 4.907692e-04   p_cons 4.649446e-01   p_joint 4.907692e-04

Joint ci ratio: 2.163918e-01	ci left: 4.432145e-04	ci right 5.521569e-04	k: 327	n:660000
Cons ci ratio: 5.175822e-03	ci left: 4.637779e-01	ci right 4.661860e-01	k: 306888	n:660000
KS ci ratio: 2.163918e-01	ci left: 4.432145e-04	ci right 5.521569e-04	k: 327	n:660000
KAT2A   660000 perm   331 sec   (1996 perm/sec)   p_kst 4.954545e-04   p_cons 4.649818e-01   p_joint 4.954545e-04

Joint ci ratio: 2.137997e-01	ci left: 4.478966e-04	ci right 5.564982e-04	k: 335	n:670000
Cons ci ratio: 5.136910e-03	ci left: 4.638006e-01	ci right 4.661907e-01	k: 311547	n:670000
KS ci ratio: 2.137997e-01	ci left: 4.478966e-04	ci right 5.564982e-04	k: 335	n:670000
KAT2A   670000 perm   339 sec   (1979 perm/sec)   p_kst 5.000000e-04   p_cons 4.649955e-01   p_joint 5.000000e-04

Joint ci ratio: 2.131667e-01	ci left: 4.440937e-04	ci right 5.514127e-04	k: 337	n:680000
Cons ci ratio: 5.098892e-03	ci left: 4.638198e-01	ci right 4.661923e-01	k: 316204	n:680000
KS ci ratio: 2.131667e-01	ci left: 4.440937e-04	ci right 5.514127e-04	k: 337	n:680000
KAT2A   680000 perm   346 sec   (1963 perm/sec)   p_kst 4.955882e-04   p_cons 4.650059e-01   p_joint 4.955882e-04

Joint ci ratio: 2.119166e-01	ci left: 4.431461e-04	ci right 5.495265e-04	k: 341	n:690000
Cons ci ratio: 5.060572e-03	ci left: 4.639501e-01	ci right 4.663053e-01	k: 320938	n:690000
KS ci ratio: 2.119166e-01	ci left: 4.431461e-04	ci right 5.495265e-04	k: 341	n:690000
KAT2A   690000 perm   354 sec   (1947 perm/sec)   p_kst 4.942029e-04   p_cons 4.651275e-01   p_joint 4.942029e-04

Joint ci ratio: 2.109935e-01	ci left: 4.408741e-04	ci right 5.461885e-04	k: 344	n:700000
Cons ci ratio: 5.023823e-03	ci left: 4.640053e-01	ci right 4.663436e-01	k: 325622	n:700000
KS ci ratio: 2.109935e-01	ci left: 4.408741e-04	ci right 5.461885e-04	k: 344	n:700000
KAT2A   700000 perm   362 sec   (1932 perm/sec)   p_kst 4.914286e-04   p_cons 4.651743e-01   p_joint 4.914286e-04

Joint ci ratio: 2.088848e-01	ci left: 4.440055e-04	ci right 5.488723e-04	k: 351	n:710000
Cons ci ratio: 4.988908e-03	ci left: 4.639547e-01	ci right 4.662765e-01	k: 330232	n:710000
KS ci ratio: 2.088848e-01	ci left: 4.440055e-04	ci right 5.488723e-04	k: 351	n:710000
KAT2A   710000 perm   371 sec   (1916 perm/sec)   p_kst 4.943662e-04   p_cons 4.651155e-01   p_joint 4.943662e-04

Joint ci ratio: 2.074168e-01	ci left: 4.444213e-04	ci right 5.485550e-04	k: 356	n:720000
Cons ci ratio: 4.954794e-03	ci left: 4.638974e-01	ci right 4.662029e-01	k: 334836	n:720000
KS ci ratio: 2.074168e-01	ci left: 4.444213e-04	ci right 5.485550e-04	k: 356	n:720000
KAT2A   720000 perm   379 sec   (1900 perm/sec)   p_kst 4.944444e-04   p_cons 4.650500e-01   p_joint 4.944444e-04

Joint ci ratio: 2.059794e-01	ci left: 4.448281e-04	ci right 5.482439e-04	k: 361	n:730000
Cons ci ratio: 4.920124e-03	ci left: 4.639676e-01	ci right 4.662573e-01	k: 339532	n:730000
KS ci ratio: 2.059794e-01	ci left: 4.448281e-04	ci right 5.482439e-04	k: 361	n:730000
KAT2A   730000 perm   387 sec   (1885 perm/sec)   p_kst 4.945205e-04   p_cons 4.651123e-01   p_joint 4.945205e-04

Joint ci ratio: 2.056960e-01	ci left: 4.400985e-04	ci right 5.422562e-04	k: 362	n:740000
Cons ci ratio: 4.887299e-03	ci left: 4.639212e-01	ci right 4.661953e-01	k: 344143	n:740000
KS ci ratio: 2.056960e-01	ci left: 4.400985e-04	ci right 5.422562e-04	k: 362	n:740000
KAT2A   740000 perm   396 sec   (1869 perm/sec)   p_kst 4.891892e-04   p_cons 4.650581e-01   p_joint 4.891892e-04

Joint ci ratio: 2.040167e-01	ci left: 4.418202e-04	ci right 5.434359e-04	k: 368	n:750000
Cons ci ratio: 4.855357e-03	ci left: 4.638520e-01	ci right 4.661109e-01	k: 348736	n:750000
KS ci ratio: 2.040167e-01	ci left: 4.418202e-04	ci right 5.434359e-04	k: 368	n:750000
KAT2A   750000 perm   404 sec   (1854 perm/sec)   p_kst 4.906667e-04   p_cons 4.649813e-01   p_joint 4.906667e-04

Joint ci ratio: 2.018401e-01	ci left: 4.459984e-04	ci right 5.473458e-04	k: 376	n:760000
Cons ci ratio: 4.821993e-03	ci left: 4.639952e-01	ci right 4.662393e-01	k: 353489	n:760000
KS ci ratio: 2.018401e-01	ci left: 4.459984e-04	ci right 5.473458e-04	k: 376	n:760000
KAT2A   760000 perm   413 sec   (1840 perm/sec)   p_kst 4.947368e-04   p_cons 4.651171e-01   p_joint 4.947368e-04

Joint ci ratio: 1.997316e-01	ci left: 4.500736e-04	ci right 5.511485e-04	k: 384	n:770000
Cons ci ratio: 4.789143e-03	ci left: 4.641516e-01	ci right 4.663811e-01	k: 358255	n:770000
KS ci ratio: 1.997316e-01	ci left: 4.500736e-04	ci right 5.511485e-04	k: 384	n:770000
KAT2A   770000 perm   422 sec   (1826 perm/sec)   p_kst 4.987013e-04   p_cons 4.652662e-01   p_joint 4.987013e-04

Joint ci ratio: 1.994732e-01	ci left: 4.455213e-04	ci right 5.454287e-04	k: 385	n:780000
Cons ci ratio: 4.758144e-03	ci left: 4.641797e-01	ci right 4.663949e-01	k: 362924	n:780000
KS ci ratio: 1.994732e-01	ci left: 4.455213e-04	ci right 5.454287e-04	k: 385	n:780000
KAT2A   780000 perm   430 sec   (1812 perm/sec)   p_kst 4.935897e-04   p_cons 4.652872e-01   p_joint 4.935897e-04

Joint ci ratio: 1.976885e-01	ci left: 4.483020e-04	ci right 5.478252e-04	k: 392	n:790000
Cons ci ratio: 4.728365e-03	ci left: 4.641414e-01	ci right 4.663424e-01	k: 367541	n:790000
KS ci ratio: 1.976885e-01	ci left: 4.483020e-04	ci right 5.478252e-04	k: 392	n:790000
KAT2A   790000 perm   439 sec   (1799 perm/sec)   p_kst 4.962025e-04   p_cons 4.652418e-01   p_joint 4.962025e-04

Joint ci ratio: 1.959509e-01	ci left: 4.510172e-04	ci right 5.501579e-04	k: 399	n:800000
Cons ci ratio: 4.698465e-03	ci left: 4.641752e-01	ci right 4.663625e-01	k: 372215	n:800000
KS ci ratio: 1.959509e-01	ci left: 4.510172e-04	ci right 5.501579e-04	k: 399	n:800000
KAT2A   800000 perm   448 sec   (1786 perm/sec)   p_kst 4.987500e-04   p_cons 4.652688e-01   p_joint 4.987500e-04

Joint ci ratio: 1.947375e-01	ci left: 4.513200e-04	ci right 5.498402e-04	k: 404	n:810000
Cons ci ratio: 4.669670e-03	ci left: 4.641503e-01	ci right 4.663240e-01	k: 376842	n:810000
KS ci ratio: 1.947375e-01	ci left: 4.513200e-04	ci right 5.498402e-04	k: 404	n:810000
KAT2A   810000 perm   457 sec   (1772 perm/sec)   p_kst 4.987654e-04   p_cons 4.652370e-01   p_joint 4.987654e-04

Joint ci ratio: 1.926087e-01	ci left: 4.562596e-04	ci right 5.546418e-04	k: 413	n:820000
Cons ci ratio: 4.640579e-03	ci left: 4.642138e-01	ci right 4.663742e-01	k: 381541	n:820000
KS ci ratio: 1.926087e-01	ci left: 4.562596e-04	ci right 5.546418e-04	k: 413	n:820000
KAT2A   820000 perm   466 sec   (1759 perm/sec)   p_kst 5.036585e-04   p_cons 4.652939e-01   p_joint 5.036585e-04

Joint ci ratio: 1.910005e-01	ci left: 4.587914e-04	ci right 5.567976e-04	k: 420	n:830000
Cons ci ratio: 4.611935e-03	ci left: 4.642855e-01	ci right 4.664328e-01	k: 386248	n:830000
KS ci ratio: 1.910005e-01	ci left: 4.587914e-04	ci right 5.567976e-04	k: 420	n:830000
KAT2A   830000 perm   475 sec   (1746 perm/sec)   p_kst 5.060241e-04   p_cons 4.653590e-01   p_joint 5.060241e-04

Joint ci ratio: 1.905488e-01	ci left: 4.555967e-04	ci right 5.526637e-04	k: 422	n:840000
Cons ci ratio: 4.583914e-03	ci left: 4.643447e-01	ci right 4.664793e-01	k: 390946	n:840000
KS ci ratio: 1.905488e-01	ci left: 4.555967e-04	ci right 5.526637e-04	k: 422	n:840000
KAT2A   840000 perm   484 sec   (1734 perm/sec)   p_kst 5.023810e-04   p_cons 4.654119e-01   p_joint 5.023810e-04

Joint ci ratio: 1.889913e-01	ci left: 4.580809e-04	ci right 5.547877e-04	k: 429	n:850000
Cons ci ratio: 4.557680e-03	ci left: 4.642627e-01	ci right 4.663846e-01	k: 395525	n:850000
KS ci ratio: 1.889913e-01	ci left: 4.580809e-04	ci right 5.547877e-04	k: 429	n:850000
KAT2A   850000 perm   494 sec   (1721 perm/sec)   p_kst 5.047059e-04   p_cons 4.653235e-01   p_joint 5.047059e-04

Joint ci ratio: 1.872570e-01	ci left: 4.616187e-04	ci right 5.580765e-04	k: 437	n:860000
Cons ci ratio: 4.531085e-03	ci left: 4.642709e-01	ci right 4.663805e-01	k: 400180	n:860000
KS ci ratio: 1.872570e-01	ci left: 4.616187e-04	ci right 5.580765e-04	k: 437	n:860000
KAT2A   860000 perm   503 sec   (1710 perm/sec)   p_kst 5.081395e-04   p_cons 4.653256e-01   p_joint 5.081395e-04

Joint ci ratio: 1.861973e-01	ci left: 4.617912e-04	ci right 5.576773e-04	k: 442	n:870000
Cons ci ratio: 4.504847e-03	ci left: 4.642905e-01	ci right 4.663879e-01	k: 404845	n:870000
KS ci ratio: 1.861973e-01	ci left: 4.617912e-04	ci right 5.576773e-04	k: 442	n:870000
KAT2A   870000 perm   513 sec   (1696 perm/sec)   p_kst 5.080460e-04   p_cons 4.653391e-01   p_joint 5.080460e-04

Joint ci ratio: 1.849489e-01	ci left: 4.630451e-04	ci right 5.584746e-04	k: 448	n:880000
Cons ci ratio: 4.479725e-03	ci left: 4.642358e-01	ci right 4.663212e-01	k: 409445	n:880000
KS ci ratio: 1.849489e-01	ci left: 4.630451e-04	ci right 5.584746e-04	k: 448	n:880000
KAT2A   880000 perm   522 sec   (1684 perm/sec)   p_kst 5.090909e-04   p_cons 4.652784e-01   p_joint 5.090909e-04

Joint ci ratio: 1.831223e-01	ci left: 4.674889e-04	ci right 5.627772e-04	k: 457	n:890000
Cons ci ratio: 4.454032e-03	ci left: 4.642925e-01	ci right 4.663662e-01	k: 414143	n:890000
KS ci ratio: 1.831223e-01	ci left: 4.674889e-04	ci right 5.627772e-04	k: 457	n:890000
KAT2A   890000 perm   532 sec   (1673 perm/sec)   p_kst 5.134831e-04   p_cons 4.653292e-01   p_joint 5.134831e-04

Joint ci ratio: 1.823280e-01	ci left: 4.665357e-04	ci right 5.611716e-04	k: 461	n:900000
Cons ci ratio: 4.428727e-03	ci left: 4.643535e-01	ci right 4.664156e-01	k: 418846	n:900000
KS ci ratio: 1.823280e-01	ci left: 4.665357e-04	ci right 5.611716e-04	k: 461	n:900000
KAT2A   900000 perm   542 sec   (1662 perm/sec)   p_kst 5.122222e-04   p_cons 4.653844e-01   p_joint 5.122222e-04

Joint ci ratio: 1.815439e-01	ci left: 4.656044e-04	ci right 5.596005e-04	k: 465	n:910000
Cons ci ratio: 4.404256e-03	ci left: 4.643670e-01	ci right 4.664178e-01	k: 423507	n:910000
KS ci ratio: 1.815439e-01	ci left: 4.656044e-04	ci right 5.596005e-04	k: 465	n:910000
KAT2A   910000 perm   552 sec   (1650 perm/sec)   p_kst 5.109890e-04   p_cons 4.653923e-01   p_joint 5.109890e-04

Joint ci ratio: 1.811559e-01	ci left: 4.626186e-04	ci right 5.557905e-04	k: 467	n:920000
Cons ci ratio: 4.380139e-03	ci left: 4.643857e-01	ci right 4.664253e-01	k: 428173	n:920000
KS ci ratio: 1.811559e-01	ci left: 4.626186e-04	ci right 5.557905e-04	k: 467	n:920000
KAT2A   920000 perm   561 sec   (1639 perm/sec)   p_kst 5.076087e-04   p_cons 4.654054e-01   p_joint 5.076087e-04

Joint ci ratio: 1.809630e-01	ci left: 4.586707e-04	ci right 5.509383e-04	k: 468	n:930000
Cons ci ratio: 4.357516e-03	ci left: 4.642783e-01	ci right 4.663069e-01	k: 432722	n:930000
KS ci ratio: 1.809630e-01	ci left: 4.586707e-04	ci right 5.509383e-04	k: 468	n:930000
KAT2A   930000 perm   571 sec   (1627 perm/sec)   p_kst 5.032258e-04   p_cons 4.652925e-01   p_joint 5.032258e-04

Joint ci ratio: 1.798164e-01	ci left: 4.598860e-04	ci right 5.517481e-04	k: 474	n:940000
Cons ci ratio: 4.334395e-03	ci left: 4.642700e-01	ci right 4.662877e-01	k: 437362	n:940000
KS ci ratio: 1.798164e-01	ci left: 4.598860e-04	ci right 5.517481e-04	k: 474	n:940000
KAT2A   940000 perm   583 sec   (1613 perm/sec)   p_kst 5.042553e-04   p_cons 4.652787e-01   p_joint 5.042553e-04

Joint ci ratio: 1.788774e-01	ci left: 4.600720e-04	ci right 5.514394e-04	k: 479	n:950000
Cons ci ratio: 4.311037e-03	ci left: 4.643313e-01	ci right 4.663384e-01	k: 442068	n:950000
KS ci ratio: 1.788774e-01	ci left: 4.600720e-04	ci right 5.514394e-04	k: 479	n:950000
KAT2A   950000 perm   594 sec   (1600 perm/sec)   p_kst 5.042105e-04   p_cons 4.653347e-01   p_joint 5.042105e-04

Joint ci ratio: 1.777697e-01	ci left: 4.612506e-04	ci right 5.522239e-04	k: 485	n:960000
Cons ci ratio: 4.288995e-03	ci left: 4.642820e-01	ci right 4.662786e-01	k: 446669	n:960000
KS ci ratio: 1.777697e-01	ci left: 4.612506e-04	ci right 5.522239e-04	k: 485	n:960000
KAT2A   960000 perm   604 sec   (1590 perm/sec)   p_kst 5.052083e-04   p_cons 4.652802e-01   p_joint 5.052083e-04

Joint ci ratio: 1.770427e-01	ci left: 4.604360e-04	ci right 5.508375e-04	k: 489	n:970000
Cons ci ratio: 4.266165e-03	ci left: 4.643647e-01	ci right 4.663510e-01	k: 451397	n:970000
KS ci ratio: 1.770427e-01	ci left: 4.604360e-04	ci right 5.508375e-04	k: 489	n:970000
KAT2A   970000 perm   615 sec   (1578 perm/sec)   p_kst 5.041237e-04   p_cons 4.653577e-01   p_joint 5.041237e-04

Joint ci ratio: 1.759686e-01	ci left: 4.615897e-04	ci right 5.516094e-04	k: 495	n:980000
Cons ci ratio: 4.244244e-03	ci left: 4.643814e-01	ci right 4.663576e-01	k: 456062	n:980000
KS ci ratio: 1.759686e-01	ci left: 4.615897e-04	ci right 5.516094e-04	k: 495	n:980000
KAT2A   980000 perm   625 sec   (1568 perm/sec)   p_kst 5.051020e-04   p_cons 4.653694e-01   p_joint 5.051020e-04

Joint ci ratio: 1.756151e-01	ci left: 4.588584e-04	ci right 5.481466e-04	k: 497	n:990000
Cons ci ratio: 4.222863e-03	ci left: 4.643736e-01	ci right 4.663397e-01	k: 460703	n:990000
KS ci ratio: 1.756151e-01	ci left: 4.588584e-04	ci right 5.481466e-04	k: 497	n:990000
KAT2A   990000 perm   636 sec   (1558 perm/sec)   p_kst 5.020202e-04   p_cons 4.653566e-01   p_joint 5.020202e-04

Joint ci ratio: 1.749142e-01	ci left: 4.580944e-04	ci right 5.468405e-04	k: 501	n:1000000
Cons ci ratio: 4.201979e-03	ci left: 4.643450e-01	ci right 4.663012e-01	k: 465323	n:1000000
KS ci ratio: 1.749142e-01	ci left: 4.580944e-04	ci right 5.468405e-04	k: 501	n:1000000
KAT2A   1000000 perm   647 sec   (1547 perm/sec)   p_kst 5.010000e-04   p_cons 4.653230e-01   p_joint 5.010000e-04

Joint ci ratio: 1.737071e-01	ci left: 4.601871e-04	ci right 5.486589e-04	k: 508	n:1010000
Cons ci ratio: 4.181410e-03	ci left: 4.643159e-01	ci right 4.662625e-01	k: 469942	n:1010000
KS ci ratio: 1.737071e-01	ci left: 4.601871e-04	ci right 5.486589e-04	k: 508	n:1010000
KAT2A   1010000 perm   657 sec   (1537 perm/sec)   p_kst 5.029703e-04   p_cons 4.652891e-01   p_joint 5.029703e-04

Joint ci ratio: 1.726921e-01	ci left: 4.613029e-04	ci right 5.494170e-04	k: 514	n:1020000
Cons ci ratio: 4.160148e-03	ci left: 4.644061e-01	ci right 4.663431e-01	k: 474682	n:1020000
KS ci ratio: 1.726921e-01	ci left: 4.613029e-04	ci right 5.494170e-04	k: 514	n:1020000
KAT2A   1020000 perm   668 sec   (1527 perm/sec)   p_kst 5.039216e-04   p_cons 4.653745e-01   p_joint 5.039216e-04

Joint ci ratio: 1.723580e-01	ci left: 4.586821e-04	ci right 5.461085e-04	k: 516	n:1030000
Cons ci ratio: 4.139975e-03	ci left: 4.644023e-01	ci right 4.663299e-01	k: 479327	n:1030000
KS ci ratio: 1.723580e-01	ci left: 4.586821e-04	ci right 5.461085e-04	k: 516	n:1030000
KAT2A   1030000 perm   679 sec   (1518 perm/sec)   p_kst 5.009709e-04   p_cons 4.653660e-01   p_joint 5.009709e-04

Joint ci ratio: 1.721919e-01	ci left: 4.551917e-04	ci right 5.418605e-04	k: 517	n:1040000
Cons ci ratio: 4.120020e-03	ci left: 4.644073e-01	ci right 4.663256e-01	k: 483981	n:1040000
KS ci ratio: 1.721919e-01	ci left: 4.551917e-04	ci right 5.418605e-04	k: 517	n:1040000
KAT2A   1040000 perm   690 sec   (1508 perm/sec)   p_kst 4.971154e-04   p_cons 4.653663e-01   p_joint 4.971154e-04

Joint ci ratio: 1.710400e-01	ci left: 4.572369e-04	ci right 5.436526e-04	k: 524	n:1050000
Cons ci ratio: 4.100203e-03	ci left: 4.644303e-01	ci right 4.663394e-01	k: 488654	n:1050000
KS ci ratio: 1.710400e-01	ci left: 4.572369e-04	ci right 5.436526e-04	k: 524	n:1050000
KAT2A   1050000 perm   701 sec   (1498 perm/sec)   p_kst 4.990476e-04   p_cons 4.653848e-01   p_joint 4.990476e-04

Joint ci ratio: 1.700708e-01	ci left: 4.583421e-04	ci right 5.444255e-04	k: 530	n:1060000
Cons ci ratio: 4.081519e-03	ci left: 4.643491e-01	ci right 4.662492e-01	k: 493217	n:1060000
KS ci ratio: 1.700708e-01	ci left: 4.583421e-04	ci right 5.444255e-04	k: 530	n:1060000
KAT2A   1060000 perm   712 sec   (1489 perm/sec)   p_kst 5.000000e-04   p_cons 4.652991e-01   p_joint 5.000000e-04

Joint ci ratio: 1.689606e-01	ci left: 4.603231e-04	ci right 5.461567e-04	k: 537	n:1070000
Cons ci ratio: 4.062646e-03	ci left: 4.643237e-01	ci right 4.662148e-01	k: 497838	n:1070000
KS ci ratio: 1.689606e-01	ci left: 4.603231e-04	ci right 5.461567e-04	k: 537	n:1070000
KAT2A   1070000 perm   723 sec   (1480 perm/sec)   p_kst 5.018692e-04   p_cons 4.652692e-01   p_joint 5.018692e-04

Joint ci ratio: 1.678719e-01	ci left: 4.622692e-04	ci right 5.478541e-04	k: 544	n:1080000
Cons ci ratio: 4.043220e-03	ci left: 4.643987e-01	ci right 4.662811e-01	k: 502567	n:1080000
KS ci ratio: 1.678719e-01	ci left: 4.622692e-04	ci right 5.478541e-04	k: 544	n:1080000
KAT2A   1080000 perm   734 sec   (1471 perm/sec)   p_kst 5.037037e-04   p_cons 4.653398e-01   p_joint 5.037037e-04

Joint ci ratio: 1.675650e-01	ci left: 4.597860e-04	ci right 5.447398e-04	k: 546	n:1090000
Cons ci ratio: 4.024856e-03	ci left: 4.643752e-01	ci right 4.662489e-01	k: 507190	n:1090000
KS ci ratio: 1.675650e-01	ci left: 4.597860e-04	ci right 5.447398e-04	k: 546	n:1090000
KAT2A   1090000 perm   746 sec   (1462 perm/sec)   p_kst 5.009174e-04   p_cons 4.653119e-01   p_joint 5.009174e-04

Joint ci ratio: 1.668043e-01	ci left: 4.599614e-04	ci right 5.445231e-04	k: 551	n:1100000
Cons ci ratio: 4.006608e-03	ci left: 4.643684e-01	ci right 4.662336e-01	k: 511831	n:1100000
KS ci ratio: 1.668043e-01	ci left: 4.599614e-04	ci right 5.445231e-04	k: 551	n:1100000
KAT2A   1100000 perm   757 sec   (1453 perm/sec)   p_kst 5.009091e-04   p_cons 4.653009e-01   p_joint 5.009091e-04

Joint ci ratio: 1.653133e-01	ci left: 4.644523e-04	ci right 5.490004e-04	k: 561	n:1110000
Cons ci ratio: 3.988613e-03	ci left: 4.643609e-01	ci right 4.662176e-01	k: 516471	n:1110000
KS ci ratio: 1.653133e-01	ci left: 4.644523e-04	ci right 5.490004e-04	k: 561	n:1110000
KAT2A   1110000 perm   770 sec   (1442 perm/sec)   p_kst 5.054054e-04   p_cons 4.652892e-01   p_joint 5.054054e-04

Joint ci ratio: 1.650201e-01	ci left: 4.620172e-04	ci right 5.459581e-04	k: 563	n:1120000
Cons ci ratio: 3.970852e-03	ci left: 4.643545e-01	ci right 4.662029e-01	k: 521112	n:1120000
KS ci ratio: 1.650201e-01	ci left: 4.620172e-04	ci right 5.459581e-04	k: 563	n:1120000
KAT2A   1120000 perm   781 sec   (1434 perm/sec)   p_kst 5.026786e-04   p_cons 4.652786e-01   p_joint 5.026786e-04

Joint ci ratio: 1.641492e-01	ci left: 4.630196e-04	ci right 5.466549e-04	k: 569	n:1130000
Cons ci ratio: 3.953403e-03	ci left: 4.643384e-01	ci right 4.661786e-01	k: 525742	n:1130000
KS ci ratio: 1.641492e-01	ci left: 4.630196e-04	ci right 5.466549e-04	k: 569	n:1130000
KAT2A   1130000 perm   793 sec   (1425 perm/sec)   p_kst 5.035398e-04   p_cons 4.652584e-01   p_joint 5.035398e-04

Joint ci ratio: 1.635764e-01	ci left: 4.623229e-04	ci right 5.455122e-04	k: 573	n:1140000
Cons ci ratio: 3.935918e-03	ci left: 4.643560e-01	ci right 4.661881e-01	k: 530410	n:1140000
KS ci ratio: 1.635764e-01	ci left: 4.623229e-04	ci right 5.455122e-04	k: 573	n:1140000
KAT2A   1140000 perm   805 sec   (1416 perm/sec)   p_kst 5.026316e-04   p_cons 4.652719e-01   p_joint 5.026316e-04

Joint ci ratio: 1.628686e-01	ci left: 4.624730e-04	ci right 5.452939e-04	k: 578	n:1150000
Cons ci ratio: 3.918828e-03	ci left: 4.643524e-01	ci right 4.661765e-01	k: 535054	n:1150000
KS ci ratio: 1.628686e-01	ci left: 4.624730e-04	ci right 5.452939e-04	k: 578	n:1150000
KAT2A   1150000 perm   818 sec   (1406 perm/sec)   p_kst 5.026087e-04   p_cons 4.652643e-01   p_joint 5.026087e-04

Joint ci ratio: 1.621698e-01	ci left: 4.626212e-04	ci right 5.450786e-04	k: 583	n:1160000
Cons ci ratio: 3.902506e-03	ci left: 4.642790e-01	ci right 4.660953e-01	k: 539617	n:1160000
KS ci ratio: 1.621698e-01	ci left: 4.626212e-04	ci right 5.450786e-04	k: 583	n:1160000
KAT2A   1160000 perm   831 sec   (1396 perm/sec)   p_kst 5.025862e-04   p_cons 4.651871e-01   p_joint 5.025862e-04

Joint ci ratio: 1.621702e-01	ci left: 4.586671e-04	ci right 5.404199e-04	k: 583	n:1170000
Cons ci ratio: 3.886393e-03	ci left: 4.642061e-01	ci right 4.660146e-01	k: 544179	n:1170000
KS ci ratio: 1.621702e-01	ci left: 4.586671e-04	ci right 5.404199e-04	k: 583	n:1170000
KAT2A   1170000 perm   843 sec   (1388 perm/sec)   p_kst 4.982906e-04   p_cons 4.651103e-01   p_joint 4.982906e-04

Joint ci ratio: 1.618934e-01	ci left: 4.564062e-04	ci right 5.376037e-04	k: 585	n:1180000
Cons ci ratio: 3.869700e-03	ci left: 4.642345e-01	ci right 4.660352e-01	k: 548859	n:1180000
KS ci ratio: 1.618934e-01	ci left: 4.564062e-04	ci right 5.376037e-04	k: 585	n:1180000
KAT2A   1180000 perm   855 sec   (1380 perm/sec)   p_kst 4.957627e-04   p_cons 4.651347e-01   p_joint 4.957627e-04

Joint ci ratio: 1.614807e-01	ci left: 4.549898e-04	ci right 5.357090e-04	k: 588	n:1190000
Cons ci ratio: 3.853161e-03	ci left: 4.642699e-01	ci right 4.660631e-01	k: 553548	n:1190000
KS ci ratio: 1.614807e-01	ci left: 4.549898e-04	ci right 5.357090e-04	k: 588	n:1190000
KAT2A   1190000 perm   867 sec   (1372 perm/sec)   p_kst 4.941176e-04   p_cons 4.651664e-01   p_joint 4.941176e-04

Joint ci ratio: 1.599932e-01	ci left: 4.599963e-04	ci right 5.407797e-04	k: 599	n:1200000
Cons ci ratio: 3.837103e-03	ci left: 4.642697e-01	ci right 4.660554e-01	k: 558195	n:1200000
KS ci ratio: 1.599932e-01	ci left: 4.599963e-04	ci right 5.407797e-04	k: 599	n:1200000
KAT2A   1200000 perm   880 sec   (1364 perm/sec)   p_kst 4.991667e-04   p_cons 4.651625e-01   p_joint 4.991667e-04

Joint ci ratio: 1.590679e-01	ci left: 4.617489e-04	ci right 5.423263e-04	k: 606	n:1210000
Cons ci ratio: 3.821047e-03	ci left: 4.642952e-01	ci right 4.660735e-01	k: 562873	n:1210000
KS ci ratio: 1.590679e-01	ci left: 4.617489e-04	ci right 5.423263e-04	k: 606	n:1210000
KAT2A   1210000 perm   893 sec   (1355 perm/sec)   p_kst 5.008264e-04   p_cons 4.651843e-01   p_joint 5.008264e-04

Joint ci ratio: 1.586764e-01	ci left: 4.603253e-04	ci right 5.404377e-04	k: 609	n:1220000
Cons ci ratio: 3.805366e-03	ci left: 4.642974e-01	ci right 4.660684e-01	k: 567523	n:1220000
KS ci ratio: 1.586764e-01	ci left: 4.603253e-04	ci right 5.404377e-04	k: 609	n:1220000
KAT2A   1220000 perm   907 sec   (1345 perm/sec)   p_kst 4.991803e-04   p_cons 4.651828e-01   p_joint 4.991803e-04

Joint ci ratio: 1.579017e-01	ci left: 4.612676e-04	ci right 5.411150e-04	k: 615	n:1230000
Cons ci ratio: 3.790360e-03	ci left: 4.642361e-01	ci right 4.659998e-01	k: 572095	n:1230000
KS ci ratio: 1.579017e-01	ci left: 4.612676e-04	ci right 5.411150e-04	k: 615	n:1230000
KAT2A   1230000 perm   920 sec   (1336 perm/sec)   p_kst 5.000000e-04   p_cons 4.651179e-01   p_joint 5.000000e-04

Joint ci ratio: 1.572647e-01	ci left: 4.614210e-04	ci right 5.409423e-04	k: 620	n:1240000
Cons ci ratio: 3.774630e-03	ci left: 4.642943e-01	ci right 4.660510e-01	k: 576814	n:1240000
KS ci ratio: 1.572647e-01	ci left: 4.614210e-04	ci right 5.409423e-04	k: 620	n:1240000
KAT2A   1240000 perm   933 sec   (1329 perm/sec)   p_kst 5.000000e-04   p_cons 4.651726e-01   p_joint 5.000000e-04

Joint ci ratio: 1.571385e-01	ci left: 4.584981e-04	ci right 5.374463e-04	k: 621	n:1250000
Cons ci ratio: 3.759609e-03	ci left: 4.642837e-01	ci right 4.660333e-01	k: 581448	n:1250000
KS ci ratio: 1.571385e-01	ci left: 4.584981e-04	ci right 5.374463e-04	k: 621	n:1250000
KAT2A   1250000 perm   946 sec   (1321 perm/sec)   p_kst 4.968000e-04   p_cons 4.651584e-01   p_joint 4.968000e-04

Joint ci ratio: 1.563860e-01	ci left: 4.594344e-04	ci right 5.381294e-04	k: 627	n:1260000
Cons ci ratio: 3.744837e-03	ci left: 4.642637e-01	ci right 4.660063e-01	k: 586070	n:1260000
KS ci ratio: 1.563860e-01	ci left: 4.594344e-04	ci right 5.381294e-04	k: 627	n:1260000
KAT2A   1260000 perm   959 sec   (1313 perm/sec)   p_kst 4.976190e-04   p_cons 4.651349e-01   p_joint 4.976190e-04

Joint ci ratio: 1.558904e-01	ci left: 4.588433e-04	ci right 5.371647e-04	k: 631	n:1270000
Cons ci ratio: 3.730479e-03	ci left: 4.642117e-01	ci right 4.659475e-01	k: 590651	n:1270000
KS ci ratio: 1.558904e-01	ci left: 4.588433e-04	ci right 5.371647e-04	k: 631	n:1270000
KAT2A   1270000 perm   972 sec   (1306 perm/sec)   p_kst 4.968504e-04   p_cons 4.650795e-01   p_joint 4.968504e-04

Joint ci ratio: 1.555218e-01	ci left: 4.575110e-04	ci right 5.354031e-04	k: 634	n:1280000
Cons ci ratio: 3.715737e-03	ci left: 4.642340e-01	ci right 4.659630e-01	k: 595326	n:1280000
KS ci ratio: 1.555218e-01	ci left: 4.575110e-04	ci right 5.354031e-04	k: 634	n:1280000
KAT2A   1280000 perm   985 sec   (1299 perm/sec)   p_kst 4.953125e-04   p_cons 4.650984e-01   p_joint 4.953125e-04

Joint ci ratio: 1.551558e-01	ci left: 4.561996e-04	ci right 5.336687e-04	k: 637	n:1290000
Cons ci ratio: 3.701105e-03	ci left: 4.642645e-01	ci right 4.659868e-01	k: 600012	n:1290000
KS ci ratio: 1.551558e-01	ci left: 4.561996e-04	ci right 5.336687e-04	k: 637	n:1290000
KAT2A   1290000 perm   998 sec   (1292 perm/sec)   p_kst 4.937984e-04   p_cons 4.651256e-01   p_joint 4.937984e-04

Joint ci ratio: 1.545514e-01	ci left: 4.563875e-04	ci right 5.335586e-04	k: 642	n:1300000
Cons ci ratio: 3.686622e-03	ci left: 4.642977e-01	ci right 4.660133e-01	k: 604702	n:1300000
KS ci ratio: 1.545514e-01	ci left: 4.563875e-04	ci right 5.335586e-04	k: 642	n:1300000
KAT2A   1300000 perm   1011 sec   (1285 perm/sec)   p_kst 4.938462e-04   p_cons 4.651554e-01   p_joint 4.938462e-04

Joint ci ratio: 1.543118e-01	ci left: 4.543713e-04	ci right 5.310713e-04	k: 644	n:1310000
Cons ci ratio: 3.672713e-03	ci left: 4.642753e-01	ci right 4.659844e-01	k: 609320	n:1310000
KS ci ratio: 1.543118e-01	ci left: 4.543713e-04	ci right 5.310713e-04	k: 644	n:1310000
KAT2A   1310000 perm   1025 sec   (1279 perm/sec)   p_kst 4.916031e-04   p_cons 4.651298e-01   p_joint 4.916031e-04

Joint ci ratio: 1.537171e-01	ci left: 4.545710e-04	ci right 5.309818e-04	k: 649	n:1320000
Cons ci ratio: 3.658509e-03	ci left: 4.643147e-01	ci right 4.660173e-01	k: 614019	n:1320000
KS ci ratio: 1.537171e-01	ci left: 4.545710e-04	ci right 5.309818e-04	k: 649	n:1320000
KAT2A   1320000 perm   1038 sec   (1272 perm/sec)   p_kst 4.916667e-04   p_cons 4.651659e-01   p_joint 4.916667e-04

Joint ci ratio: 1.531293e-01	ci left: 4.547682e-04	ci right 5.308931e-04	k: 654	n:1330000
Cons ci ratio: 3.644981e-03	ci left: 4.642836e-01	ci right 4.659797e-01	k: 618625	n:1330000
KS ci ratio: 1.531293e-01	ci left: 4.547682e-04	ci right 5.308931e-04	k: 654	n:1330000
KAT2A   1330000 perm   1051 sec   (1266 perm/sec)   p_kst 4.917293e-04   p_cons 4.651316e-01   p_joint 4.917293e-04

Joint ci ratio: 1.524327e-01	ci left: 4.556809e-04	ci right 5.315798e-04	k: 660	n:1340000
Cons ci ratio: 3.631112e-03	ci left: 4.643201e-01	ci right 4.660099e-01	k: 623321	n:1340000
KS ci ratio: 1.524327e-01	ci left: 4.556809e-04	ci right 5.315798e-04	k: 660	n:1340000
KAT2A   1340000 perm   1065 sec   (1259 perm/sec)   p_kst 4.925373e-04   p_cons 4.651649e-01   p_joint 4.925373e-04

Joint ci ratio: 1.519736e-01	ci left: 4.551556e-04	ci right 5.307179e-04	k: 664	n:1350000
Cons ci ratio: 3.617868e-03	ci left: 4.642917e-01	ci right 4.659752e-01	k: 627930	n:1350000
KS ci ratio: 1.519736e-01	ci left: 4.551556e-04	ci right 5.307179e-04	k: 664	n:1350000
KAT2A   1350000 perm   1079 sec   (1252 perm/sec)   p_kst 4.918519e-04   p_cons 4.651333e-01   p_joint 4.918519e-04

Joint ci ratio: 1.511799e-01	ci left: 4.567607e-04	ci right 5.321577e-04	k: 671	n:1360000
Cons ci ratio: 3.605018e-03	ci left: 4.642291e-01	ci right 4.659064e-01	k: 632492	n:1360000
KS ci ratio: 1.511799e-01	ci left: 4.567607e-04	ci right 5.321577e-04	k: 671	n:1360000
KAT2A   1360000 perm   1093 sec   (1245 perm/sec)   p_kst 4.933824e-04   p_cons 4.650676e-01   p_joint 4.933824e-04

Joint ci ratio: 1.507320e-01	ci left: 4.562361e-04	ci right 5.313032e-04	k: 675	n:1370000
Cons ci ratio: 3.591878e-03	ci left: 4.642265e-01	ci right 4.658977e-01	k: 637135	n:1370000
KS ci ratio: 1.507320e-01	ci left: 4.562361e-04	ci right 5.313032e-04	k: 675	n:1370000
KAT2A   1370000 perm   1106 sec   (1238 perm/sec)   p_kst 4.927007e-04   p_cons 4.650620e-01   p_joint 4.927007e-04

Joint ci ratio: 1.502880e-01	ci left: 4.557194e-04	ci right 5.304609e-04	k: 679	n:1380000
Cons ci ratio: 3.578562e-03	ci left: 4.642683e-01	ci right 4.659333e-01	k: 641839	n:1380000
KS ci ratio: 1.502880e-01	ci left: 4.557194e-04	ci right 5.304609e-04	k: 679	n:1380000
KAT2A   1380000 perm   1120 sec   (1232 perm/sec)   p_kst 4.920290e-04   p_cons 4.651007e-01   p_joint 4.920290e-04

Joint ci ratio: 1.495203e-01	ci left: 4.572880e-04	ci right 5.318693e-04	k: 686	n:1390000
Cons ci ratio: 3.565939e-03	ci left: 4.642331e-01	ci right 4.658922e-01	k: 646437	n:1390000
KS ci ratio: 1.495203e-01	ci left: 4.572880e-04	ci right 5.318693e-04	k: 686	n:1390000
KAT2A   1390000 perm   1134 sec   (1226 perm/sec)   p_kst 4.935252e-04   p_cons 4.650626e-01   p_joint 4.935252e-04

Joint ci ratio: 1.487642e-01	ci left: 4.588351e-04	ci right 5.332566e-04	k: 693	n:1400000
Cons ci ratio: 3.553230e-03	ci left: 4.642292e-01	ci right 4.658824e-01	k: 651078	n:1400000
KS ci ratio: 1.487642e-01	ci left: 4.588351e-04	ci right 5.332566e-04	k: 693	n:1400000
KAT2A   1400000 perm   1148 sec   (1220 perm/sec)   p_kst 4.950000e-04   p_cons 4.650557e-01   p_joint 4.950000e-04

Joint ci ratio: 1.482312e-01	ci left: 4.589953e-04	ci right 5.331524e-04	k: 698	n:1410000
Cons ci ratio: 3.540716e-03	ci left: 4.642169e-01	ci right 4.658641e-01	k: 655707	n:1410000
KS ci ratio: 1.482312e-01	ci left: 4.589953e-04	ci right 5.331524e-04	k: 698	n:1410000
KAT2A   1410000 perm   1162 sec   (1213 perm/sec)   p_kst 4.950355e-04   p_cons 4.650404e-01   p_joint 4.950355e-04

Joint ci ratio: 1.477039e-01	ci left: 4.591537e-04	ci right 5.330492e-04	k: 703	n:1420000
Cons ci ratio: 3.528144e-03	ci left: 4.642315e-01	ci right 4.658729e-01	k: 660374	n:1420000
KS ci ratio: 1.477039e-01	ci left: 4.591537e-04	ci right 5.330492e-04	k: 703	n:1420000
KAT2A   1420000 perm   1176 sec   (1207 perm/sec)   p_kst 4.950704e-04   p_cons 4.650521e-01   p_joint 4.950704e-04

Joint ci ratio: 1.471821e-01	ci left: 4.593103e-04	ci right 5.329470e-04	k: 708	n:1430000
Cons ci ratio: 3.515458e-03	ci left: 4.642808e-01	ci right 4.659165e-01	k: 665091	n:1430000
KS ci ratio: 1.471821e-01	ci left: 4.593103e-04	ci right 5.329470e-04	k: 708	n:1430000
KAT2A   1430000 perm   1192 sec   (1200 perm/sec)   p_kst 4.951049e-04   p_cons 4.650986e-01   p_joint 4.951049e-04

Joint ci ratio: 1.467688e-01	ci left: 4.587963e-04	ci right 5.321259e-04	k: 712	n:1440000
Cons ci ratio: 3.503323e-03	ci left: 4.642705e-01	ci right 4.659005e-01	k: 669723	n:1440000
KS ci ratio: 1.467688e-01	ci left: 4.587963e-04	ci right 5.321259e-04	k: 712	n:1440000
KAT2A   1440000 perm   1207 sec   (1193 perm/sec)   p_kst 4.944444e-04   p_cons 4.650854e-01   p_joint 4.944444e-04

Joint ci ratio: 1.459521e-01	ci left: 4.609474e-04	ci right 5.341751e-04	k: 720	n:1450000
Cons ci ratio: 3.491139e-03	ci left: 4.642851e-01	ci right 4.659095e-01	k: 674391	n:1450000
KS ci ratio: 1.459521e-01	ci left: 4.609474e-04	ci right 5.341751e-04	k: 720	n:1450000
KAT2A   1450000 perm   1222 sec   (1187 perm/sec)   p_kst 4.965517e-04   p_cons 4.650972e-01   p_joint 4.965517e-04

Joint ci ratio: 1.456495e-01	ci left: 4.597701e-04	ci right 5.326461e-04	k: 723	n:1460000
Cons ci ratio: 3.479459e-03	ci left: 4.642455e-01	ci right 4.658643e-01	k: 678980	n:1460000
KS ci ratio: 1.456495e-01	ci left: 4.597701e-04	ci right 5.326461e-04	k: 723	n:1460000
KAT2A   1460000 perm   1237 sec   (1181 perm/sec)   p_kst 4.952055e-04   p_cons 4.650548e-01   p_joint 4.952055e-04

Joint ci ratio: 1.455492e-01	ci left: 4.572978e-04	ci right 5.297278e-04	k: 724	n:1470000
Cons ci ratio: 3.467716e-03	ci left: 4.642322e-01	ci right 4.658455e-01	k: 683607	n:1470000
KS ci ratio: 1.455492e-01	ci left: 4.572978e-04	ci right 5.297278e-04	k: 724	n:1470000
KAT2A   1470000 perm   1252 sec   (1175 perm/sec)   p_kst 4.925170e-04   p_cons 4.650388e-01   p_joint 4.925170e-04

Joint ci ratio: 1.452491e-01	ci left: 4.561613e-04	ci right 5.282493e-04	k: 727	n:1480000
Cons ci ratio: 3.455846e-03	ci left: 4.642543e-01	ci right 4.658621e-01	k: 688286	n:1480000
KS ci ratio: 1.452491e-01	ci left: 4.561613e-04	ci right 5.282493e-04	k: 727	n:1480000
KAT2A   1480000 perm   1266 sec   (1169 perm/sec)   p_kst 4.912162e-04   p_cons 4.650581e-01   p_joint 4.912162e-04

Joint ci ratio: 1.450501e-01	ci left: 4.543933e-04	ci right 5.260950e-04	k: 729	n:1490000
Cons ci ratio: 3.444191e-03	ci left: 4.642626e-01	ci right 4.658650e-01	k: 692945	n:1490000
KS ci ratio: 1.450501e-01	ci left: 4.543933e-04	ci right 5.260950e-04	k: 729	n:1490000
KAT2A   1490000 perm   1281 sec   (1163 perm/sec)   p_kst 4.892617e-04   p_cons 4.650638e-01   p_joint 4.892617e-04

Joint ci ratio: 1.448520e-01	ci left: 4.526489e-04	ci right 5.239694e-04	k: 731	n:1500000
Cons ci ratio: 3.432772e-03	ci left: 4.642535e-01	ci right 4.658506e-01	k: 697578	n:1500000
KS ci ratio: 1.448520e-01	ci left: 4.526489e-04	ci right 5.239694e-04	k: 731	n:1500000
KAT2A   1500000 perm   1297 sec   (1157 perm/sec)   p_kst 4.873333e-04   p_cons 4.650520e-01   p_joint 4.873333e-04

Joint ci ratio: 1.445561e-01	ci left: 4.515661e-04	ci right 5.225581e-04	k: 734	n:1510000
Cons ci ratio: 3.421430e-03	ci left: 4.642499e-01	ci right 4.658416e-01	k: 702219	n:1510000
KS ci ratio: 1.445561e-01	ci left: 4.515661e-04	ci right 5.225581e-04	k: 734	n:1510000
KAT2A   1510000 perm   1312 sec   (1151 perm/sec)   p_kst 4.860927e-04   p_cons 4.650457e-01   p_joint 4.860927e-04

Joint ci ratio: 1.442621e-01	ci left: 4.504976e-04	ci right 5.211652e-04	k: 737	n:1520000
Cons ci ratio: 3.410371e-03	ci left: 4.642213e-01	ci right 4.658078e-01	k: 706822	n:1520000
KS ci ratio: 1.442621e-01	ci left: 4.504976e-04	ci right 5.211652e-04	k: 737	n:1520000
KAT2A   1520000 perm   1328 sec   (1144 perm/sec)   p_kst 4.848684e-04   p_cons 4.650145e-01   p_joint 4.848684e-04

Joint ci ratio: 1.438728e-01	ci left: 4.500733e-04	ci right 5.204674e-04	k: 741	n:1530000
Cons ci ratio: 3.399503e-03	ci left: 4.641807e-01	ci right 4.657620e-01	k: 711406	n:1530000
KS ci ratio: 1.438728e-01	ci left: 4.500733e-04	ci right 5.204674e-04	k: 741	n:1530000
KAT2A   1530000 perm   1343 sec   (1139 perm/sec)   p_kst 4.843137e-04   p_cons 4.649712e-01   p_joint 4.843137e-04

Joint ci ratio: 1.435829e-01	ci left: 4.490287e-04	ci right 5.191058e-04	k: 744	n:1540000
Cons ci ratio: 3.388230e-03	ci left: 4.642152e-01	ci right 4.657914e-01	k: 716105	n:1540000
KS ci ratio: 1.435829e-01	ci left: 4.490287e-04	ci right 5.191058e-04	k: 744	n:1540000
KAT2A   1540000 perm   1359 sec   (1133 perm/sec)   p_kst 4.831169e-04   p_cons 4.650032e-01   p_joint 4.831169e-04

Joint ci ratio: 1.431035e-01	ci left: 4.492419e-04	ci right 5.190982e-04	k: 749	n:1550000
Cons ci ratio: 3.377379e-03	ci left: 4.642036e-01	ci right 4.657746e-01	k: 720733	n:1550000
KS ci ratio: 1.431035e-01	ci left: 4.492419e-04	ci right 5.190982e-04	k: 749	n:1550000
KAT2A   1550000 perm   1375 sec   (1127 perm/sec)   p_kst 4.832258e-04   p_cons 4.649890e-01   p_joint 4.832258e-04

Joint ci ratio: 1.427234e-01	ci left: 4.488345e-04	ci right 5.184264e-04	k: 753	n:1560000
Cons ci ratio: 3.366640e-03	ci left: 4.641908e-01	ci right 4.657568e-01	k: 725359	n:1560000
KS ci ratio: 1.427234e-01	ci left: 4.488345e-04	ci right 5.184264e-04	k: 753	n:1560000
KAT2A   1560000 perm   1390 sec   (1122 perm/sec)   p_kst 4.826923e-04   p_cons 4.649737e-01   p_joint 4.826923e-04

Joint ci ratio: 1.424404e-01	ci left: 4.478184e-04	ci right 5.171032e-04	k: 756	n:1570000
Cons ci ratio: 3.356342e-03	ci left: 4.641278e-01	ci right 4.656888e-01	k: 729906	n:1570000
KS ci ratio: 1.424404e-01	ci left: 4.478184e-04	ci right 5.171032e-04	k: 756	n:1570000
KAT2A   1570000 perm   1406 sec   (1117 perm/sec)   p_kst 4.815287e-04   p_cons 4.649083e-01   p_joint 4.815287e-04

Joint ci ratio: 1.420656e-01	ci left: 4.474256e-04	ci right 5.164521e-04	k: 760	n:1580000
Cons ci ratio: 3.345832e-03	ci left: 4.641113e-01	ci right 4.656673e-01	k: 734525	n:1580000
KS ci ratio: 1.420656e-01	ci left: 4.474256e-04	ci right 5.164521e-04	k: 760	n:1580000
KAT2A   1580000 perm   1421 sec   (1112 perm/sec)   p_kst 4.810127e-04   p_cons 4.648892e-01   p_joint 4.810127e-04

Joint ci ratio: 1.408671e-01	ci left: 4.524984e-04	ci right 5.216692e-04	k: 773	n:1590000
Cons ci ratio: 3.335214e-03	ci left: 4.641257e-01	ci right 4.656769e-01	k: 739193	n:1590000
KS ci ratio: 1.408671e-01	ci left: 4.524984e-04	ci right 5.216692e-04	k: 773	n:1590000
KAT2A   1590000 perm   1437 sec   (1106 perm/sec)   p_kst 4.861635e-04   p_cons 4.649013e-01   p_joint 4.861635e-04

Joint ci ratio: 1.401446e-01	ci left: 4.544946e-04	ci right 5.235844e-04	k: 781	n:1600000
Cons ci ratio: 3.324850e-03	ci left: 4.641169e-01	ci right 4.656632e-01	k: 743824	n:1600000
KS ci ratio: 1.401446e-01	ci left: 4.544946e-04	ci right 5.235844e-04	k: 781	n:1600000
KAT2A   1600000 perm   1453 sec   (1101 perm/sec)   p_kst 4.881250e-04   p_cons 4.648900e-01   p_joint 4.881250e-04

Joint ci ratio: 1.392568e-01	ci left: 4.576658e-04	ci right 5.267604e-04	k: 791	n:1610000
Cons ci ratio: 3.314669e-03	ci left: 4.640952e-01	ci right 4.656366e-01	k: 748434	n:1610000
KS ci ratio: 1.392568e-01	ci left: 4.576658e-04	ci right 5.267604e-04	k: 791	n:1610000
KAT2A   1610000 perm   1469 sec   (1096 perm/sec)   p_kst 4.913043e-04   p_cons 4.648658e-01   p_joint 4.913043e-04

Joint ci ratio: 1.385587e-01	ci left: 4.596074e-04	ci right 5.286185e-04	k: 799	n:1620000
Cons ci ratio: 3.304561e-03	ci left: 4.640768e-01	ci right 4.656135e-01	k: 753049	n:1620000
KS ci ratio: 1.385587e-01	ci left: 4.596074e-04	ci right 5.286185e-04	k: 799	n:1620000
KAT2A   1620000 perm   1486 sec   (1091 perm/sec)   p_kst 4.932099e-04   p_cons 4.648451e-01   p_joint 4.932099e-04

Joint ci ratio: 1.379563e-01	ci left: 4.609336e-04	ci right 5.298183e-04	k: 806	n:1630000
Cons ci ratio: 3.294390e-03	ci left: 4.640819e-01	ci right 4.656139e-01	k: 757702	n:1630000
KS ci ratio: 1.379563e-01	ci left: 4.609336e-04	ci right 5.298183e-04	k: 806	n:1630000
KAT2A   1630000 perm   1502 sec   (1085 perm/sec)   p_kst 4.944785e-04   p_cons 4.648479e-01   p_joint 4.944785e-04

Joint ci ratio: 1.376157e-01	ci left: 4.604780e-04	ci right 5.291108e-04	k: 810	n:1640000
Cons ci ratio: 3.284313e-03	ci left: 4.640870e-01	ci right 4.656143e-01	k: 762355	n:1640000
KS ci ratio: 1.376157e-01	ci left: 4.604780e-04	ci right 5.291108e-04	k: 810	n:1640000
KAT2A   1640000 perm   1519 sec   (1079 perm/sec)   p_kst 4.939024e-04   p_cons 4.648506e-01   p_joint 4.939024e-04

Joint ci ratio: 1.372777e-01	ci left: 4.600281e-04	ci right 5.284116e-04	k: 814	n:1650000
Cons ci ratio: 3.274276e-03	ci left: 4.640999e-01	ci right 4.656226e-01	k: 767021	n:1650000
KS ci ratio: 1.372777e-01	ci left: 4.600281e-04	ci right 5.284116e-04	k: 814	n:1650000
KAT2A   1650000 perm   1535 sec   (1075 perm/sec)   p_kst 4.933333e-04   p_cons 4.648612e-01   p_joint 4.933333e-04

Joint ci ratio: 1.370258e-01	ci left: 4.590021e-04	ci right 5.270977e-04	k: 817	n:1660000
Cons ci ratio: 3.264591e-03	ci left: 4.640730e-01	ci right 4.655910e-01	k: 771621	n:1660000
KS ci ratio: 1.370258e-01	ci left: 4.590021e-04	ci right 5.270977e-04	k: 817	n:1660000
KAT2A   1660000 perm   1552 sec   (1070 perm/sec)   p_kst 4.921687e-04   p_cons 4.648319e-01   p_joint 4.921687e-04

Joint ci ratio: 1.369423e-01	ci left: 4.568318e-04	ci right 5.245607e-04	k: 818	n:1670000
Cons ci ratio: 3.254822e-03	ci left: 4.640721e-01	ci right 4.655856e-01	k: 776264	n:1670000
KS ci ratio: 1.369423e-01	ci left: 4.568318e-04	ci right 5.245607e-04	k: 818	n:1670000
KAT2A   1670000 perm   1568 sec   (1065 perm/sec)   p_kst 4.898204e-04   p_cons 4.648287e-01   p_joint 4.898204e-04

Joint ci ratio: 1.365261e-01	ci left: 4.569869e-04	ci right 5.245163e-04	k: 823	n:1680000
Cons ci ratio: 3.245355e-03	ci left: 4.640384e-01	ci right 4.655474e-01	k: 780852	n:1680000
KS ci ratio: 1.365261e-01	ci left: 4.569869e-04	ci right 5.245163e-04	k: 823	n:1680000
KAT2A   1680000 perm   1585 sec   (1060 perm/sec)   p_kst 4.898810e-04   p_cons 4.647929e-01   p_joint 4.898810e-04

Joint ci ratio: 1.360317e-01	ci left: 4.577121e-04	ci right 5.250839e-04	k: 829	n:1690000
Cons ci ratio: 3.235597e-03	ci left: 4.640626e-01	ci right 4.655671e-01	k: 785537	n:1690000
KS ci ratio: 1.360317e-01	ci left: 4.577121e-04	ci right 5.250839e-04	k: 829	n:1690000
KAT2A   1690000 perm   1602 sec   (1055 perm/sec)   p_kst 4.905325e-04   p_cons 4.648148e-01   p_joint 4.905325e-04

Joint ci ratio: 1.357866e-01	ci left: 4.567244e-04	ci right 5.238199e-04	k: 832	n:1700000
Cons ci ratio: 3.226017e-03	ci left: 4.640724e-01	ci right 4.655725e-01	k: 790198	n:1700000
KS ci ratio: 1.357866e-01	ci left: 4.567244e-04	ci right 5.238199e-04	k: 832	n:1700000
KAT2A   1700000 perm   1618 sec   (1051 perm/sec)   p_kst 4.894118e-04   p_cons 4.648224e-01   p_joint 4.894118e-04

Joint ci ratio: 1.353002e-01	ci left: 4.574433e-04	ci right 5.243843e-04	k: 838	n:1710000
Cons ci ratio: 3.216295e-03	ci left: 4.641171e-01	ci right 4.656128e-01	k: 794919	n:1710000
KS ci ratio: 1.353002e-01	ci left: 4.574433e-04	ci right 5.243843e-04	k: 838	n:1710000
KAT2A   1710000 perm   1635 sec   (1046 perm/sec)   p_kst 4.900585e-04   p_cons 4.648649e-01   p_joint 4.900585e-04

Joint ci ratio: 1.348189e-01	ci left: 4.581543e-04	ci right 5.249417e-04	k: 844	n:1720000
Cons ci ratio: 3.207066e-03	ci left: 4.640986e-01	ci right 4.655899e-01	k: 799532	n:1720000
KS ci ratio: 1.348189e-01	ci left: 4.581543e-04	ci right 5.249417e-04	k: 844	n:1720000
KAT2A   1720000 perm   1653 sec   (1041 perm/sec)   p_kst 4.906977e-04   p_cons 4.648442e-01   p_joint 4.906977e-04

Joint ci ratio: 1.342639e-01	ci left: 4.594161e-04	ci right 5.260896e-04	k: 851	n:1730000
Cons ci ratio: 3.197837e-03	ci left: 4.640924e-01	ci right 4.655794e-01	k: 804166	n:1730000
KS ci ratio: 1.342639e-01	ci left: 4.594161e-04	ci right 5.260896e-04	k: 851	n:1730000
KAT2A   1730000 perm   1671 sec   (1035 perm/sec)   p_kst 4.919075e-04   p_cons 4.648358e-01   p_joint 4.919075e-04

Joint ci ratio: 1.336378e-01	ci left: 4.612194e-04	ci right 5.278178e-04	k: 859	n:1740000
Cons ci ratio: 3.188492e-03	ci left: 4.641167e-01	ci right 4.655995e-01	k: 808853	n:1740000
KS ci ratio: 1.336378e-01	ci left: 4.612194e-04	ci right 5.278178e-04	k: 859	n:1740000
KAT2A   1740000 perm   1689 sec   (1030 perm/sec)   p_kst 4.936782e-04   p_cons 4.648580e-01   p_joint 4.936782e-04

Joint ci ratio: 1.330972e-01	ci left: 4.624504e-04	ci right 5.289350e-04	k: 866	n:1750000
Cons ci ratio: 3.179463e-03	ci left: 4.641042e-01	ci right 4.655827e-01	k: 813476	n:1750000
KS ci ratio: 1.330972e-01	ci left: 4.624504e-04	ci right 5.289350e-04	k: 866	n:1750000
KAT2A   1750000 perm   1706 sec   (1026 perm/sec)   p_kst 4.948571e-04   p_cons 4.648434e-01   p_joint 4.948571e-04

Joint ci ratio: 1.327912e-01	ci left: 4.620200e-04	ci right 5.282780e-04	k: 870	n:1760000
Cons ci ratio: 3.170712e-03	ci left: 4.640601e-01	ci right 4.655344e-01	k: 818043	n:1760000
KS ci ratio: 1.327912e-01	ci left: 4.620200e-04	ci right 5.282780e-04	k: 870	n:1760000
KAT2A   1760000 perm   1723 sec   (1022 perm/sec)   p_kst 4.943182e-04   p_cons 4.647972e-01   p_joint 4.943182e-04

Joint ci ratio: 1.322607e-01	ci left: 4.632334e-04	ci right 5.293792e-04	k: 877	n:1770000
Cons ci ratio: 3.161584e-03	ci left: 4.640870e-01	ci right 4.655571e-01	k: 822735	n:1770000
KS ci ratio: 1.322607e-01	ci left: 4.632334e-04	ci right 5.293792e-04	k: 877	n:1770000
KAT2A   1770000 perm   1741 sec   (1017 perm/sec)   p_kst 4.954802e-04   p_cons 4.648220e-01   p_joint 4.954802e-04

Joint ci ratio: 1.318111e-01	ci left: 4.638904e-04	ci right 5.298872e-04	k: 883	n:1780000
Cons ci ratio: 3.152703e-03	ci left: 4.640873e-01	ci right 4.655533e-01	k: 827380	n:1780000
KS ci ratio: 1.318111e-01	ci left: 4.638904e-04	ci right 5.298872e-04	k: 883	n:1780000
KAT2A   1780000 perm   1759 sec   (1012 perm/sec)   p_kst 4.960674e-04   p_cons 4.648202e-01   p_joint 4.960674e-04

Joint ci ratio: 1.315881e-01	ci left: 4.629196e-04	ci right 5.286581e-04	k: 886	n:1790000
Cons ci ratio: 3.144029e-03	ci left: 4.640663e-01	ci right 4.655282e-01	k: 831987	n:1790000
KS ci ratio: 1.315881e-01	ci left: 4.629196e-04	ci right 5.286581e-04	k: 886	n:1790000
KAT2A   1790000 perm   1777 sec   (1007 perm/sec)   p_kst 4.949721e-04   p_cons 4.647972e-01   p_joint 4.949721e-04

Joint ci ratio: 1.311452e-01	ci left: 4.635716e-04	ci right 5.291640e-04	k: 892	n:1800000
Cons ci ratio: 3.134983e-03	ci left: 4.641162e-01	ci right 4.655740e-01	k: 836721	n:1800000
KS ci ratio: 1.311452e-01	ci left: 4.635716e-04	ci right 5.291640e-04	k: 892	n:1800000
KAT2A   1800000 perm   1794 sec   (1003 perm/sec)   p_kst 4.955556e-04   p_cons 4.648450e-01   p_joint 4.955556e-04

Joint ci ratio: 1.309256e-01	ci left: 4.626136e-04	ci right 5.279522e-04	k: 895	n:1810000
Cons ci ratio: 3.126201e-03	ci left: 4.641356e-01	ci right 4.655894e-01	k: 841401	n:1810000
KS ci ratio: 1.309256e-01	ci left: 4.626136e-04	ci right 5.279522e-04	k: 895	n:1810000
KAT2A   1810000 perm   1812 sec   (999 perm/sec)   p_kst 4.944751e-04   p_cons 4.648624e-01   p_joint 4.944751e-04

Joint ci ratio: 1.305618e-01	ci left: 4.627291e-04	ci right 5.278884e-04	k: 900	n:1820000
Cons ci ratio: 3.117692e-03	ci left: 4.641230e-01	ci right 4.655727e-01	k: 846023	n:1820000
KS ci ratio: 1.305618e-01	ci left: 4.627291e-04	ci right 5.278884e-04	k: 900	n:1820000
KAT2A   1820000 perm   1833 sec   (993 perm/sec)   p_kst 4.945055e-04   p_cons 4.648478e-01   p_joint 4.945055e-04

Joint ci ratio: 1.302010e-01	ci left: 4.628437e-04	ci right 5.278251e-04	k: 905	n:1830000
Cons ci ratio: 3.109301e-03	ci left: 4.641028e-01	ci right 4.655486e-01	k: 850631	n:1830000
KS ci ratio: 1.302010e-01	ci left: 4.628437e-04	ci right 5.278251e-04	k: 905	n:1830000
KAT2A   1830000 perm   1852 sec   (988 perm/sec)   p_kst 4.945355e-04   p_cons 4.648257e-01   p_joint 4.945355e-04

Joint ci ratio: 1.298432e-01	ci left: 4.629572e-04	ci right 5.277622e-04	k: 910	n:1840000
Cons ci ratio: 3.100753e-03	ci left: 4.641188e-01	ci right 4.655607e-01	k: 855305	n:1840000
KS ci ratio: 1.298432e-01	ci left: 4.629572e-04	ci right 5.277622e-04	k: 910	n:1840000
KAT2A   1840000 perm   1872 sec   (983 perm/sec)   p_kst 4.945652e-04   p_cons 4.648397e-01   p_joint 4.945652e-04

Joint ci ratio: 1.295591e-01	ci left: 4.625468e-04	ci right 5.271417e-04	k: 914	n:1850000
Cons ci ratio: 3.092352e-03	ci left: 4.641222e-01	ci right 4.655601e-01	k: 859956	n:1850000
KS ci ratio: 1.295591e-01	ci left: 4.625468e-04	ci right 5.271417e-04	k: 914	n:1850000
KAT2A   1850000 perm   1892 sec   (978 perm/sec)   p_kst 4.940541e-04   p_cons 4.648411e-01   p_joint 4.940541e-04

Joint ci ratio: 1.290663e-01	ci left: 4.637017e-04	ci right 5.281927e-04	k: 921	n:1860000
Cons ci ratio: 3.083893e-03	ci left: 4.641459e-01	ci right 4.655800e-01	k: 864645	n:1860000
KS ci ratio: 1.290663e-01	ci left: 4.637017e-04	ci right 5.281927e-04	k: 921	n:1860000
KAT2A   1860000 perm   1913 sec   (972 perm/sec)   p_kst 4.951613e-04   p_cons 4.648629e-01   p_joint 4.951613e-04

Joint ci ratio: 1.286483e-01	ci left: 4.643271e-04	ci right 5.286801e-04	k: 927	n:1870000
Cons ci ratio: 3.075698e-03	ci left: 4.641379e-01	ci right 4.655681e-01	k: 869275	n:1870000
KS ci ratio: 1.286483e-01	ci left: 4.643271e-04	ci right 5.286801e-04	k: 927	n:1870000
KAT2A   1870000 perm   1932 sec   (968 perm/sec)   p_kst 4.957219e-04   p_cons 4.648529e-01   p_joint 4.957219e-04

Joint ci ratio: 1.283720e-01	ci left: 4.639166e-04	ci right 5.280640e-04	k: 931	n:1880000
Cons ci ratio: 3.067718e-03	ci left: 4.641055e-01	ci right 4.655319e-01	k: 873859	n:1880000
KS ci ratio: 1.283720e-01	ci left: 4.639166e-04	ci right 5.280640e-04	k: 931	n:1880000
KAT2A   1880000 perm   1951 sec   (963 perm/sec)   p_kst 4.952128e-04   p_cons 4.648186e-01   p_joint 4.952128e-04

Joint ci ratio: 1.282346e-01	ci left: 4.624862e-04	ci right 5.263621e-04	k: 933	n:1890000
Cons ci ratio: 3.059804e-03	ci left: 4.640729e-01	ci right 4.654955e-01	k: 878442	n:1890000
KS ci ratio: 1.282346e-01	ci left: 4.624862e-04	ci right 5.263621e-04	k: 933	n:1890000
KAT2A   1890000 perm   1972 sec   (958 perm/sec)   p_kst 4.936508e-04   p_cons 4.647841e-01   p_joint 4.936508e-04

Joint ci ratio: 1.279609e-01	ci left: 4.620899e-04	ci right 5.257645e-04	k: 937	n:1900000
Cons ci ratio: 3.051663e-03	ci left: 4.640874e-01	ci right 4.655063e-01	k: 883114	n:1900000
KS ci ratio: 1.279609e-01	ci left: 4.620899e-04	ci right 5.257645e-04	k: 937	n:1900000
KAT2A   1900000 perm   1992 sec   (954 perm/sec)   p_kst 4.931579e-04   p_cons 4.647968e-01   p_joint 4.931579e-04

Joint ci ratio: 1.275536e-01	ci left: 4.627115e-04	ci right 5.262535e-04	k: 943	n:1910000
Cons ci ratio: 3.043482e-03	ci left: 4.641192e-01	ci right 4.655343e-01	k: 887819	n:1910000
KS ci ratio: 1.275536e-01	ci left: 4.627115e-04	ci right 5.262535e-04	k: 943	n:1910000
KAT2A   1910000 perm   2011 sec   (950 perm/sec)   p_kst 4.937173e-04   p_cons 4.648267e-01   p_joint 4.937173e-04

Joint ci ratio: 1.272842e-01	ci left: 4.623185e-04	ci right 5.256623e-04	k: 947	n:1920000
Cons ci ratio: 3.035524e-03	ci left: 4.641245e-01	ci right 4.655360e-01	k: 892474	n:1920000
KS ci ratio: 1.272842e-01	ci left: 4.623185e-04	ci right 5.256623e-04	k: 947	n:1920000
KAT2A   1920000 perm   2029 sec   (946 perm/sec)   p_kst 4.932292e-04   p_cons 4.648302e-01   p_joint 4.932292e-04

Joint ci ratio: 1.269499e-01	ci left: 4.624313e-04	ci right 5.256117e-04	k: 952	n:1930000
Cons ci ratio: 3.027746e-03	ci left: 4.641106e-01	ci right 4.655185e-01	k: 897092	n:1930000
KS ci ratio: 1.269499e-01	ci left: 4.624313e-04	ci right 5.256117e-04	k: 952	n:1930000
KAT2A   1930000 perm   2048 sec   (942 perm/sec)   p_kst 4.932642e-04   p_cons 4.648145e-01   p_joint 4.932642e-04

Joint ci ratio: 1.268170e-01	ci left: 4.610459e-04	ci right 5.239660e-04	k: 954	n:1940000
Cons ci ratio: 3.020183e-03	ci left: 4.640712e-01	ci right 4.654753e-01	k: 901660	n:1940000
KS ci ratio: 1.268170e-01	ci left: 4.610459e-04	ci right 5.239660e-04	k: 954	n:1940000
KAT2A   1940000 perm   2067 sec   (939 perm/sec)   p_kst 4.917526e-04   p_cons 4.647732e-01   p_joint 4.917526e-04

Joint ci ratio: 1.260927e-01	ci left: 4.641442e-04	ci right 5.270983e-04	k: 965	n:1950000
Cons ci ratio: 3.012652e-03	ci left: 4.640362e-01	ci right 4.654368e-01	k: 906236	n:1950000
KS ci ratio: 1.260927e-01	ci left: 4.641442e-04	ci right 5.270983e-04	k: 965	n:1950000
KAT2A   1950000 perm   2087 sec   (934 perm/sec)   p_kst 4.948718e-04   p_cons 4.647364e-01   p_joint 4.948718e-04

Joint ci ratio: 1.255737e-01	ci left: 4.657292e-04	ci right 5.286191e-04	k: 973	n:1960000
Cons ci ratio: 3.004773e-03	ci left: 4.640684e-01	ci right 4.654654e-01	k: 910943	n:1960000
KS ci ratio: 1.255737e-01	ci left: 4.657292e-04	ci right 5.286191e-04	k: 973	n:1960000
KAT2A   1960000 perm   2105 sec   (931 perm/sec)   p_kst 4.964286e-04   p_cons 4.647668e-01   p_joint 4.964286e-04

Joint ci ratio: 1.253166e-01	ci left: 4.653319e-04	ci right 5.280299e-04	k: 977	n:1970000
Cons ci ratio: 2.996995e-03	ci left: 4.640937e-01	ci right 4.654871e-01	k: 915637	n:1970000
KS ci ratio: 1.253166e-01	ci left: 4.653319e-04	ci right 5.280299e-04	k: 977	n:1970000
KAT2A   1970000 perm   2124 sec   (927 perm/sec)   p_kst 4.959391e-04   p_cons 4.647904e-01   p_joint 4.959391e-04

Joint ci ratio: 1.248071e-01	ci left: 4.668957e-04	ci right 5.295298e-04	k: 985	n:1980000
Cons ci ratio: 2.989681e-03	ci left: 4.640516e-01	ci right 4.654415e-01	k: 920198	n:1980000
KS ci ratio: 1.248071e-01	ci left: 4.668957e-04	ci right 5.295298e-04	k: 985	n:1980000
KAT2A   1980000 perm   2144 sec   (924 perm/sec)   p_kst 4.974747e-04   p_cons 4.647465e-01   p_joint 4.974747e-04

Joint ci ratio: 1.244919e-01	ci left: 4.669838e-04	ci right 5.294597e-04	k: 990	n:1990000
Cons ci ratio: 2.982200e-03	ci left: 4.640465e-01	ci right 4.654330e-01	k: 924832	n:1990000
KS ci ratio: 1.244919e-01	ci left: 4.669838e-04	ci right 5.294597e-04	k: 990	n:1990000
KAT2A   1990000 perm   2163 sec   (920 perm/sec)   p_kst 4.974874e-04   p_cons 4.647397e-01   p_joint 4.974874e-04

Joint ci ratio: 1.244292e-01	ci left: 4.651332e-04	ci right 5.273280e-04	k: 991	n:2000000
Cons ci ratio: 2.974728e-03	ci left: 4.640496e-01	ci right 4.654325e-01	k: 929482	n:2000000
KS ci ratio: 1.244292e-01	ci left: 4.651332e-04	ci right 5.273280e-04	k: 991	n:2000000
KAT2A   2000000 perm   2183 sec   (916 perm/sec)   p_kst 4.955000e-04   p_cons 4.647410e-01   p_joint 4.955000e-04

Joint ci ratio: 1.241791e-01	ci left: 4.647473e-04	ci right 5.267563e-04	k: 995	n:2010000
Cons ci ratio: 2.967305e-03	ci left: 4.640536e-01	ci right 4.654331e-01	k: 934134	n:2010000
KS ci ratio: 1.241791e-01	ci left: 4.647473e-04	ci right 5.267563e-04	k: 995	n:2010000
KAT2A   2010000 perm   2203 sec   (913 perm/sec)   p_kst 4.950249e-04   p_cons 4.647433e-01   p_joint 4.950249e-04

Joint ci ratio: 1.238068e-01	ci left: 4.653248e-04	ci right 5.272110e-04	k: 1001	n:2020000
Cons ci ratio: 2.959879e-03	ci left: 4.640675e-01	ci right 4.654435e-01	k: 938806	n:2020000
KS ci ratio: 1.238068e-01	ci left: 4.653248e-04	ci right 5.272110e-04	k: 1001	n:2020000
KAT2A   2020000 perm   2222 sec   (909 perm/sec)   p_kst 4.955446e-04   p_cons 4.647554e-01   p_joint 4.955446e-04

Joint ci ratio: 1.233154e-01	ci left: 4.668516e-04	ci right 5.286765e-04	k: 1009	n:2030000
Cons ci ratio: 2.952546e-03	ci left: 4.640748e-01	ci right 4.654475e-01	k: 943465	n:2030000
KS ci ratio: 1.233154e-01	ci left: 4.668516e-04	ci right 5.286765e-04	k: 1009	n:2030000
KAT2A   2030000 perm   2243 sec   (905 perm/sec)   p_kst 4.970443e-04   p_cons 4.647611e-01   p_joint 4.970443e-04

Joint ci ratio: 1.229507e-01	ci left: 4.674137e-04	ci right 5.291167e-04	k: 1015	n:2040000
Cons ci ratio: 2.945288e-03	ci left: 4.640786e-01	ci right 4.654479e-01	k: 948117	n:2040000
KS ci ratio: 1.229507e-01	ci left: 4.674137e-04	ci right 5.291167e-04	k: 1015	n:2040000
KAT2A   2040000 perm   2263 sec   (901 perm/sec)   p_kst 4.975490e-04   p_cons 4.647632e-01   p_joint 4.975490e-04

Joint ci ratio: 1.228299e-01	ci left: 4.660793e-04	ci right 5.275412e-04	k: 1017	n:2050000
Cons ci ratio: 2.937921e-03	ci left: 4.641097e-01	ci right 4.654757e-01	k: 952825	n:2050000
KS ci ratio: 1.228299e-01	ci left: 4.660793e-04	ci right 5.275412e-04	k: 1017	n:2050000
KAT2A   2050000 perm   2283 sec   (898 perm/sec)   p_kst 4.960976e-04   p_cons 4.647927e-01   p_joint 4.960976e-04

Joint ci ratio: 1.224097e-01	ci left: 4.671106e-04	ci right 5.284826e-04	k: 1024	n:2060000
Cons ci ratio: 2.930825e-03	ci left: 4.641042e-01	ci right 4.654668e-01	k: 957458	n:2060000
KS ci ratio: 1.224097e-01	ci left: 4.671106e-04	ci right 5.284826e-04	k: 1024	n:2060000
KAT2A   2060000 perm   2303 sec   (894 perm/sec)   p_kst 4.970874e-04   p_cons 4.647854e-01   p_joint 4.970874e-04

Joint ci ratio: 1.221716e-01	ci left: 4.667273e-04	ci right 5.279210e-04	k: 1028	n:2070000
Cons ci ratio: 2.923995e-03	ci left: 4.640619e-01	ci right 4.654213e-01	k: 962015	n:2070000
KS ci ratio: 1.221716e-01	ci left: 4.667273e-04	ci right 5.279210e-04	k: 1028	n:2070000
KAT2A   2070000 perm   2324 sec   (891 perm/sec)   p_kst 4.966184e-04   p_cons 4.647415e-01   p_joint 4.966184e-04

Joint ci ratio: 1.216994e-01	ci left: 4.682122e-04	ci right 5.293463e-04	k: 1036	n:2080000
Cons ci ratio: 2.916950e-03	ci left: 4.640648e-01	ci right 4.654209e-01	k: 966665	n:2080000
KS ci ratio: 1.216994e-01	ci left: 4.682122e-04	ci right 5.293463e-04	k: 1036	n:2080000
KAT2A   2080000 perm   2344 sec   (888 perm/sec)   p_kst 4.980769e-04   p_cons 4.647428e-01   p_joint 4.980769e-04

Joint ci ratio: 1.213488e-01	ci left: 4.687556e-04	ci right 5.297715e-04	k: 1042	n:2090000
Cons ci ratio: 2.909841e-03	ci left: 4.640873e-01	ci right 4.654401e-01	k: 971356	n:2090000
KS ci ratio: 1.213488e-01	ci left: 4.687556e-04	ci right 5.297715e-04	k: 1042	n:2090000
KAT2A   2090000 perm   2364 sec   (884 perm/sec)   p_kst 4.985646e-04   p_cons 4.647636e-01   p_joint 4.985646e-04

Joint ci ratio: 1.210590e-01	ci left: 4.688321e-04	ci right 5.297019e-04	k: 1047	n:2100000
Cons ci ratio: 2.902837e-03	ci left: 4.641005e-01	ci right 4.654501e-01	k: 976028	n:2100000
KS ci ratio: 1.210590e-01	ci left: 4.688321e-04	ci right 5.297019e-04	k: 1047	n:2100000
KAT2A   2100000 perm   2385 sec   (881 perm/sec)   p_kst 4.985714e-04   p_cons 4.647752e-01   p_joint 4.985714e-04

Joint ci ratio: 1.205994e-01	ci left: 4.702871e-04	ci right 5.310975e-04	k: 1055	n:2110000
Cons ci ratio: 2.895748e-03	ci left: 4.641368e-01	ci right 4.654832e-01	k: 980749	n:2110000
KS ci ratio: 1.205994e-01	ci left: 4.702871e-04	ci right 5.310975e-04	k: 1055	n:2110000
KAT2A   2110000 perm   2405 sec   (877 perm/sec)   p_kst 5.000000e-04   p_cons 4.648100e-01   p_joint 5.000000e-04

Joint ci ratio: 1.199760e-01	ci left: 4.731014e-04	ci right 5.339370e-04	k: 1066	n:2120000
Cons ci ratio: 2.888867e-03	ci left: 4.641459e-01	ci right 4.654891e-01	k: 985413	n:2120000
KS ci ratio: 1.199760e-01	ci left: 4.731014e-04	ci right 5.339370e-04	k: 1066	n:2120000
KAT2A   2120000 perm   2425 sec   (874 perm/sec)   p_kst 5.028302e-04   p_cons 4.648175e-01   p_joint 5.028302e-04

Joint ci ratio: 1.197518e-01	ci left: 4.727019e-04	ci right 5.333644e-04	k: 1070	n:2130000
Cons ci ratio: 2.881934e-03	ci left: 4.641723e-01	ci right 4.655123e-01	k: 990114	n:2130000
KS ci ratio: 1.197518e-01	ci left: 4.727019e-04	ci right 5.333644e-04	k: 1070	n:2130000
KAT2A   2130000 perm   2445 sec   (871 perm/sec)   p_kst 5.023474e-04   p_cons 4.648423e-01   p_joint 5.023474e-04

Joint ci ratio: 1.193623e-01	ci left: 4.736662e-04	ci right 5.342409e-04	k: 1077	n:2140000
Cons ci ratio: 2.874935e-03	ci left: 4.642185e-01	ci right 4.655554e-01	k: 994858	n:2140000
KS ci ratio: 1.193623e-01	ci left: 4.736662e-04	ci right 5.342409e-04	k: 1077	n:2140000
KAT2A   2140000 perm   2467 sec   (867 perm/sec)   p_kst 5.032710e-04   p_cons 4.648869e-01   p_joint 5.032710e-04

Joint ci ratio: 1.189766e-01	ci left: 4.746219e-04	ci right 5.351088e-04	k: 1084	n:2150000
Cons ci ratio: 2.868310e-03	ci left: 4.642080e-01	ci right 4.655419e-01	k: 999481	n:2150000
KS ci ratio: 1.189766e-01	ci left: 4.746219e-04	ci right 5.351088e-04	k: 1084	n:2150000
KAT2A   2150000 perm   2491 sec   (863 perm/sec)   p_kst 5.041860e-04   p_cons 4.648749e-01   p_joint 5.041860e-04

Joint ci ratio: 1.185403e-01	ci left: 4.760182e-04	ci right 5.364451e-04	k: 1092	n:2160000
Cons ci ratio: 2.861817e-03	ci left: 4.641828e-01	ci right 4.655136e-01	k: 1004072	n:2160000
KS ci ratio: 1.185403e-01	ci left: 4.760182e-04	ci right 5.364451e-04	k: 1092	n:2160000
KAT2A   2160000 perm   2515 sec   (859 perm/sec)   p_kst 5.055556e-04   p_cons 4.648481e-01   p_joint 5.055556e-04

Joint ci ratio: 1.181625e-01	ci left: 4.769549e-04	ci right 5.372943e-04	k: 1099	n:2170000
Cons ci ratio: 2.855190e-03	ci left: 4.641887e-01	ci right 4.655164e-01	k: 1008730	n:2170000
KS ci ratio: 1.181625e-01	ci left: 4.769549e-04	ci right 5.372943e-04	k: 1099	n:2170000
KAT2A   2170000 perm   2537 sec   (855 perm/sec)   p_kst 5.064516e-04   p_cons 4.648525e-01   p_joint 5.064516e-04

Joint ci ratio: 1.181089e-01	ci left: 4.752122e-04	ci right 5.353019e-04	k: 1100	n:2180000
Cons ci ratio: 2.848790e-03	ci left: 4.641630e-01	ci right 4.654876e-01	k: 1013319	n:2180000
KS ci ratio: 1.181089e-01	ci left: 4.752122e-04	ci right 5.353019e-04	k: 1100	n:2180000
KAT2A   2180000 perm   2559 sec   (852 perm/sec)   p_kst 5.045872e-04   p_cons 4.648252e-01   p_joint 5.045872e-04

Joint ci ratio: 1.178950e-01	ci left: 4.748149e-04	ci right 5.347380e-04	k: 1104	n:2190000
Cons ci ratio: 2.842313e-03	ci left: 4.641584e-01	ci right 4.654800e-01	k: 1017954	n:2190000
KS ci ratio: 1.178950e-01	ci left: 4.748149e-04	ci right 5.347380e-04	k: 1104	n:2190000
KAT2A   2190000 perm   2581 sec   (848 perm/sec)   p_kst 5.041096e-04   p_cons 4.648192e-01   p_joint 5.041096e-04

Joint ci ratio: 1.176822e-01	ci left: 4.744212e-04	ci right 5.341791e-04	k: 1108	n:2200000
Cons ci ratio: 2.835779e-03	ci left: 4.641717e-01	ci right 4.654902e-01	k: 1022628	n:2200000
KS ci ratio: 1.176822e-01	ci left: 4.744212e-04	ci right 5.341791e-04	k: 1108	n:2200000
KAT2A   2200000 perm   2604 sec   (845 perm/sec)   p_kst 5.036364e-04   p_cons 4.648309e-01   p_joint 5.036364e-04

Joint ci ratio: 1.173125e-01	ci left: 4.753489e-04	ci right 5.350224e-04	k: 1115	n:2210000
Cons ci ratio: 2.829419e-03	ci left: 4.641622e-01	ci right 4.654778e-01	k: 1027252	n:2210000
KS ci ratio: 1.173125e-01	ci left: 4.753489e-04	ci right 5.350224e-04	k: 1115	n:2210000
KAT2A   2210000 perm   2626 sec   (841 perm/sec)   p_kst 5.045249e-04   p_cons 4.648199e-01   p_joint 5.045249e-04

Joint ci ratio: 1.170506e-01	ci left: 4.753939e-04	ci right 5.349307e-04	k: 1120	n:2220000
Cons ci ratio: 2.823075e-03	ci left: 4.641572e-01	ci right 4.654699e-01	k: 1031886	n:2220000
KS ci ratio: 1.170506e-01	ci left: 4.753939e-04	ci right 5.349307e-04	k: 1120	n:2220000
KAT2A   2220000 perm   2649 sec   (838 perm/sec)   p_kst 5.045045e-04   p_cons 4.648135e-01   p_joint 5.045045e-04

Joint ci ratio: 1.166868e-01	ci left: 4.763093e-04	ci right 5.357626e-04	k: 1127	n:2230000
Cons ci ratio: 2.816652e-03	ci left: 4.641739e-01	ci right 4.654836e-01	k: 1036568	n:2230000
KS ci ratio: 1.166868e-01	ci left: 4.763093e-04	ci right 5.357626e-04	k: 1127	n:2230000
KAT2A   2230000 perm   2670 sec   (835 perm/sec)   p_kst 5.053812e-04   p_cons 4.648287e-01   p_joint 5.053812e-04

Joint ci ratio: 1.164804e-01	ci left: 4.759166e-04	ci right 5.352086e-04	k: 1131	n:2240000
Cons ci ratio: 2.810215e-03	ci left: 4.642007e-01	ci right 4.655074e-01	k: 1041273	n:2240000
KS ci ratio: 1.164804e-01	ci left: 4.759166e-04	ci right 5.352086e-04	k: 1131	n:2240000
KAT2A   2240000 perm   2693 sec   (832 perm/sec)   p_kst 5.049107e-04   p_cons 4.648540e-01   p_joint 5.049107e-04

Joint ci ratio: 1.163264e-01	ci left: 4.750959e-04	ci right 5.342020e-04	k: 1134	n:2250000
Cons ci ratio: 2.804135e-03	ci left: 4.641717e-01	ci right 4.654755e-01	k: 1045853	n:2250000
KS ci ratio: 1.163264e-01	ci left: 4.750959e-04	ci right 5.342020e-04	k: 1134	n:2250000
KAT2A   2250000 perm   2716 sec   (828 perm/sec)   p_kst 5.040000e-04   p_cons 4.648236e-01   p_joint 5.040000e-04

Joint ci ratio: 1.160202e-01	ci left: 4.755714e-04	ci right 5.345703e-04	k: 1140	n:2260000
Cons ci ratio: 2.797997e-03	ci left: 4.641602e-01	ci right 4.654611e-01	k: 1050472	n:2260000
KS ci ratio: 1.160202e-01	ci left: 4.755714e-04	ci right 5.345703e-04	k: 1140	n:2260000
KAT2A   2260000 perm   2740 sec   (825 perm/sec)   p_kst 5.044248e-04   p_cons 4.648106e-01   p_joint 5.044248e-04

Joint ci ratio: 1.157668e-01	ci left: 4.756152e-04	ci right 5.344818e-04	k: 1145	n:2270000
Cons ci ratio: 2.791860e-03	ci left: 4.641558e-01	ci right 4.654539e-01	k: 1055107	n:2270000
KS ci ratio: 1.157668e-01	ci left: 4.756152e-04	ci right 5.344818e-04	k: 1145	n:2270000
KAT2A   2270000 perm   2763 sec   (822 perm/sec)   p_kst 5.044053e-04   p_cons 4.648048e-01   p_joint 5.044053e-04

Joint ci ratio: 1.155653e-01	ci left: 4.752328e-04	ci right 5.339427e-04	k: 1149	n:2280000
Cons ci ratio: 2.785664e-03	ci left: 4.641691e-01	ci right 4.654643e-01	k: 1059782	n:2280000
KS ci ratio: 1.155653e-01	ci left: 4.752328e-04	ci right 5.339427e-04	k: 1149	n:2280000
KAT2A   2280000 perm   2787 sec   (818 perm/sec)   p_kst 5.039474e-04   p_cons 4.648167e-01   p_joint 5.039474e-04

Joint ci ratio: 1.155152e-01	ci left: 4.735816e-04	ci right 5.320604e-04	k: 1150	n:2290000
Cons ci ratio: 2.779573e-03	ci left: 4.641709e-01	ci right 4.654633e-01	k: 1064431	n:2290000
KS ci ratio: 1.155152e-01	ci left: 4.735816e-04	ci right 5.320604e-04	k: 1150	n:2290000
KAT2A   2290000 perm   2810 sec   (815 perm/sec)   p_kst 5.021834e-04   p_cons 4.648170e-01   p_joint 5.021834e-04

Joint ci ratio: 1.153650e-01	ci left: 4.727892e-04	ci right 5.310891e-04	k: 1153	n:2300000
Cons ci ratio: 2.773697e-03	ci left: 4.641413e-01	ci right 4.654309e-01	k: 1069008	n:2300000
KS ci ratio: 1.153650e-01	ci left: 4.727892e-04	ci right 5.310891e-04	k: 1153	n:2300000
KAT2A   2300000 perm   2836 sec   (811 perm/sec)   p_kst 5.013043e-04   p_cons 4.647861e-01   p_joint 5.013043e-04

Joint ci ratio: 1.150662e-01	ci left: 4.732651e-04	ci right 5.314622e-04	k: 1159	n:2310000
Cons ci ratio: 2.767633e-03	ci left: 4.641523e-01	ci right 4.654391e-01	k: 1073678	n:2310000
KS ci ratio: 1.150662e-01	ci left: 4.732651e-04	ci right 5.314622e-04	k: 1159	n:2310000
KAT2A   2310000 perm   2860 sec   (808 perm/sec)   p_kst 5.017316e-04   p_cons 4.647957e-01   p_joint 5.017316e-04

Joint ci ratio: 1.146223e-01	ci left: 4.749930e-04	ci right 5.331621e-04	k: 1168	n:2320000
Cons ci ratio: 2.761810e-03	ci left: 4.641270e-01	ci right 4.654110e-01	k: 1078264	n:2320000
KS ci ratio: 1.146223e-01	ci left: 4.749930e-04	ci right 5.331621e-04	k: 1168	n:2320000
KAT2A   2320000 perm   2886 sec   (804 perm/sec)   p_kst 5.034483e-04   p_cons 4.647690e-01   p_joint 5.034483e-04

Joint ci ratio: 1.144268e-01	ci left: 4.746220e-04	ci right 5.326398e-04	k: 1172	n:2330000
Cons ci ratio: 2.755950e-03	ci left: 4.641152e-01	ci right 4.653965e-01	k: 1082881	n:2330000
KS ci ratio: 1.144268e-01	ci left: 4.746220e-04	ci right 5.326398e-04	k: 1172	n:2330000
KAT2A   2330000 perm   2911 sec   (801 perm/sec)   p_kst 5.030043e-04   p_cons 4.647558e-01   p_joint 5.030043e-04

Joint ci ratio: 1.140868e-01	ci left: 4.754997e-04	ci right 5.334404e-04	k: 1179	n:2340000
Cons ci ratio: 2.750040e-03	ci left: 4.641193e-01	ci right 4.653978e-01	k: 1087535	n:2340000
KS ci ratio: 1.140868e-01	ci left: 4.754997e-04	ci right 5.334404e-04	k: 1179	n:2340000
KAT2A   2340000 perm   2933 sec   (798 perm/sec)   p_kst 5.038462e-04   p_cons 4.647585e-01   p_joint 5.038462e-04

Joint ci ratio: 1.136541e-01	ci left: 4.771970e-04	ci right 5.351093e-04	k: 1188	n:2350000
Cons ci ratio: 2.744170e-03	ci left: 4.641230e-01	ci right 4.653988e-01	k: 1092188	n:2350000
KS ci ratio: 1.136541e-01	ci left: 4.771970e-04	ci right 5.351093e-04	k: 1188	n:2350000
KAT2A   2350000 perm   2955 sec   (795 perm/sec)   p_kst 5.055319e-04   p_cons 4.647609e-01   p_joint 5.055319e-04

Joint ci ratio: 1.135587e-01	ci left: 4.759983e-04	ci right 5.337134e-04	k: 1190	n:2360000
Cons ci ratio: 2.738356e-03	ci left: 4.641232e-01	ci right 4.653963e-01	k: 1096833	n:2360000
KS ci ratio: 1.135587e-01	ci left: 4.759983e-04	ci right 5.337134e-04	k: 1190	n:2360000
KAT2A   2360000 perm   2979 sec   (792 perm/sec)   p_kst 5.042373e-04   p_cons 4.647597e-01   p_joint 5.042373e-04

Joint ci ratio: 1.133211e-01	ci left: 4.760397e-04	ci right 5.336310e-04	k: 1195	n:2370000
Cons ci ratio: 2.732838e-03	ci left: 4.640762e-01	ci right 4.653466e-01	k: 1101366	n:2370000
KS ci ratio: 1.133211e-01	ci left: 4.760397e-04	ci right 5.336310e-04	k: 1195	n:2370000
KAT2A   2370000 perm   3003 sec   (789 perm/sec)   p_kst 5.042194e-04   p_cons 4.647114e-01   p_joint 5.042194e-04

Joint ci ratio: 1.128970e-01	ci left: 4.777141e-04	ci right 5.352773e-04	k: 1204	n:2380000
Cons ci ratio: 2.727089e-03	ci left: 4.640780e-01	ci right 4.653457e-01	k: 1106014	n:2380000
KS ci ratio: 1.128970e-01	ci left: 4.777141e-04	ci right 5.352773e-04	k: 1204	n:2380000
KAT2A   2380000 perm   3026 sec   (787 perm/sec)   p_kst 5.058824e-04   p_cons 4.647118e-01   p_joint 5.058824e-04

Joint ci ratio: 1.128503e-01	ci left: 4.761219e-04	ci right 5.334678e-04	k: 1205	n:2390000
Cons ci ratio: 2.721614e-03	ci left: 4.640361e-01	ci right 4.653012e-01	k: 1110558	n:2390000
KS ci ratio: 1.128503e-01	ci left: 4.761219e-04	ci right 5.334678e-04	k: 1205	n:2390000
KAT2A   2390000 perm   3050 sec   (784 perm/sec)   p_kst 5.041841e-04   p_cons 4.646686e-01   p_joint 5.041841e-04

Joint ci ratio: 1.126171e-01	ci left: 4.761626e-04	ci right 5.333871e-04	k: 1210	n:2400000
Cons ci ratio: 2.716044e-03	ci left: 4.640180e-01	ci right 4.652804e-01	k: 1115158	n:2400000
KS ci ratio: 1.126171e-01	ci left: 4.761626e-04	ci right 5.333871e-04	k: 1210	n:2400000
KAT2A   2400000 perm   3075 sec   (781 perm/sec)   p_kst 5.041667e-04   p_cons 4.646492e-01   p_joint 5.041667e-04

Joint ci ratio: 1.124316e-01	ci left: 4.757999e-04	ci right 5.328803e-04	k: 1214	n:2410000
Cons ci ratio: 2.710474e-03	ci left: 4.640063e-01	ci right 4.652660e-01	k: 1119773	n:2410000
KS ci ratio: 1.124316e-01	ci left: 4.757999e-04	ci right 5.328803e-04	k: 1214	n:2410000
KAT2A   2410000 perm   3100 sec   (777 perm/sec)   p_kst 5.037344e-04   p_cons 4.646361e-01   p_joint 5.037344e-04

Joint ci ratio: 1.122931e-01	ci left: 4.750386e-04	ci right 5.319529e-04	k: 1217	n:2420000
Cons ci ratio: 2.704905e-03	ci left: 4.640008e-01	ci right 4.652580e-01	k: 1124403	n:2420000
KS ci ratio: 1.122931e-01	ci left: 4.750386e-04	ci right 5.319529e-04	k: 1217	n:2420000
KAT2A   2420000 perm   3124 sec   (775 perm/sec)   p_kst 5.028926e-04   p_cons 4.646293e-01   p_joint 5.028926e-04

Joint ci ratio: 1.122471e-01	ci left: 4.734837e-04	ci right 5.301869e-04	k: 1218	n:2430000
Cons ci ratio: 2.699480e-03	ci left: 4.639752e-01	ci right 4.652298e-01	k: 1128984	n:2430000
KS ci ratio: 1.122471e-01	ci left: 4.734837e-04	ci right 5.301869e-04	k: 1218	n:2430000
KAT2A   2430000 perm   3147 sec   (772 perm/sec)   p_kst 5.012346e-04   p_cons 4.646025e-01   p_joint 5.012346e-04

Joint ci ratio: 1.121093e-01	ci left: 4.727382e-04	ci right 5.292780e-04	k: 1221	n:2440000
Cons ci ratio: 2.693971e-03	ci left: 4.639712e-01	ci right 4.652232e-01	k: 1133617	n:2440000
KS ci ratio: 1.121093e-01	ci left: 4.727382e-04	ci right 5.292780e-04	k: 1221	n:2440000
KAT2A   2440000 perm   3170 sec   (770 perm/sec)   p_kst 5.004098e-04   p_cons 4.645971e-01   p_joint 5.004098e-04

Joint ci ratio: 1.116986e-01	ci left: 4.743793e-04	ci right 5.308939e-04	k: 1230	n:2450000
Cons ci ratio: 2.688446e-03	ci left: 4.639765e-01	ci right 4.652260e-01	k: 1138273	n:2450000
KS ci ratio: 1.116986e-01	ci left: 4.743793e-04	ci right 5.308939e-04	k: 1230	n:2450000
KAT2A   2450000 perm   3192 sec   (767 perm/sec)   p_kst 5.020408e-04   p_cons 4.646012e-01   p_joint 5.020408e-04

Joint ci ratio: 1.116081e-01	ci left: 4.732412e-04	ci right 5.295715e-04	k: 1232	n:2460000
Cons ci ratio: 2.682938e-03	ci left: 4.639847e-01	ci right 4.652316e-01	k: 1142936	n:2460000
KS ci ratio: 1.116081e-01	ci left: 4.732412e-04	ci right 5.295715e-04	k: 1232	n:2460000
KAT2A   2460000 perm   3218 sec   (764 perm/sec)   p_kst 5.008130e-04   p_cons 4.646081e-01   p_joint 5.008130e-04

Joint ci ratio: 1.113825e-01	ci left: 4.732931e-04	ci right 5.295082e-04	k: 1237	n:2470000
Cons ci ratio: 2.677456e-03	ci left: 4.639945e-01	ci right 4.652388e-01	k: 1147603	n:2470000
KS ci ratio: 1.113825e-01	ci left: 4.732931e-04	ci right 5.295082e-04	k: 1237	n:2470000
KAT2A   2470000 perm   3243 sec   (762 perm/sec)   p_kst 5.008097e-04   p_cons 4.646166e-01   p_joint 5.008097e-04

Joint ci ratio: 1.112030e-01	ci left: 4.729526e-04	ci right 5.290309e-04	k: 1241	n:2480000
Cons ci ratio: 2.672057e-03	ci left: 4.639948e-01	ci right 4.652367e-01	k: 1152247	n:2480000
KS ci ratio: 1.112030e-01	ci left: 4.729526e-04	ci right 5.290309e-04	k: 1241	n:2480000
KAT2A   2480000 perm   3268 sec   (759 perm/sec)   p_kst 5.004032e-04   p_cons 4.646157e-01   p_joint 5.004032e-04

Joint ci ratio: 1.108465e-01	ci left: 4.741769e-04	ci right 5.302082e-04	k: 1249	n:2490000
Cons ci ratio: 2.666407e-03	ci left: 4.640482e-01	ci right 4.652876e-01	k: 1157023	n:2490000
KS ci ratio: 1.108465e-01	ci left: 4.741769e-04	ci right 5.302082e-04	k: 1249	n:2490000
KAT2A   2490000 perm   3293 sec   (756 perm/sec)   p_kst 5.016064e-04   p_cons 4.646679e-01   p_joint 5.016064e-04

Joint ci ratio: 1.105374e-01	ci left: 4.750027e-04	ci right 5.309649e-04	k: 1256	n:2500000
Cons ci ratio: 2.660903e-03	ci left: 4.640804e-01	ci right 4.653173e-01	k: 1161747	n:2500000
KS ci ratio: 1.105374e-01	ci left: 4.750027e-04	ci right 5.309649e-04	k: 1256	n:2500000
KAT2A   2500000 perm   3318 sec   (753 perm/sec)   p_kst 5.024000e-04   p_cons 4.646988e-01   p_joint 5.024000e-04

Joint ci ratio: 1.102308e-01	ci left: 4.758221e-04	ci right 5.317153e-04	k: 1263	n:2510000
Cons ci ratio: 2.655500e-03	ci left: 4.641000e-01	ci right 4.653344e-01	k: 1166440	n:2510000
KS ci ratio: 1.102308e-01	ci left: 4.758221e-04	ci right 5.317153e-04	k: 1263	n:2510000
KAT2A   2510000 perm   3342 sec   (751 perm/sec)   p_kst 5.031873e-04   p_cons 4.647171e-01   p_joint 5.031873e-04

Joint ci ratio: 1.100568e-01	ci left: 4.754775e-04	ci right 5.312363e-04	k: 1267	n:2520000
Cons ci ratio: 2.650146e-03	ci left: 4.641162e-01	ci right 4.653482e-01	k: 1171125	n:2520000
KS ci ratio: 1.100568e-01	ci left: 4.754775e-04	ci right 5.312363e-04	k: 1267	n:2520000
KAT2A   2520000 perm   3367 sec   (749 perm/sec)   p_kst 5.027778e-04   p_cons 4.647321e-01   p_joint 5.027778e-04

Joint ci ratio: 1.098405e-01	ci left: 4.755201e-04	ci right 5.311672e-04	k: 1272	n:2530000
Cons ci ratio: 2.644956e-03	ci left: 4.641074e-01	ci right 4.653369e-01	k: 1175747	n:2530000
KS ci ratio: 1.098405e-01	ci left: 4.755201e-04	ci right 5.311672e-04	k: 1272	n:2530000
KAT2A   2530000 perm   3392 sec   (746 perm/sec)   p_kst 5.027668e-04   p_cons 4.647221e-01   p_joint 5.027668e-04

Joint ci ratio: 1.096684e-01	ci left: 4.751795e-04	ci right 5.306940e-04	k: 1276	n:2540000
Cons ci ratio: 2.639628e-03	ci left: 4.641306e-01	ci right 4.653577e-01	k: 1180450	n:2540000
KS ci ratio: 1.096684e-01	ci left: 4.751795e-04	ci right 5.306940e-04	k: 1276	n:2540000
KAT2A   2540000 perm   3416 sec   (744 perm/sec)   p_kst 5.023622e-04   p_cons 4.647441e-01   p_joint 5.023622e-04

Joint ci ratio: 1.094543e-01	ci left: 4.752231e-04	ci right 5.306273e-04	k: 1281	n:2550000
Cons ci ratio: 2.634589e-03	ci left: 4.641049e-01	ci right 4.653296e-01	k: 1185029	n:2550000
KS ci ratio: 1.094543e-01	ci left: 4.752231e-04	ci right 5.306273e-04	k: 1281	n:2550000
KAT2A   2550000 perm   3440 sec   (741 perm/sec)   p_kst 5.023529e-04   p_cons 4.647173e-01   p_joint 5.023529e-04

Joint ci ratio: 1.092840e-01	ci left: 4.748865e-04	ci right 5.301598e-04	k: 1285	n:2560000
Cons ci ratio: 2.629342e-03	ci left: 4.641244e-01	ci right 4.653467e-01	k: 1189723	n:2560000
KS ci ratio: 1.092840e-01	ci left: 4.748865e-04	ci right 5.301598e-04	k: 1285	n:2560000
KAT2A   2560000 perm   3464 sec   (739 perm/sec)   p_kst 5.019531e-04   p_cons 4.647355e-01   p_joint 5.019531e-04

Joint ci ratio: 1.091567e-01	ci left: 4.741741e-04	ci right 5.292961e-04	k: 1288	n:2570000
Cons ci ratio: 2.624115e-03	ci left: 4.641457e-01	ci right 4.653657e-01	k: 1194422	n:2570000
KS ci ratio: 1.091567e-01	ci left: 4.741741e-04	ci right 5.292961e-04	k: 1288	n:2570000
KAT2A   2570000 perm   3489 sec   (737 perm/sec)   p_kst 5.011673e-04   p_cons 4.647556e-01   p_joint 5.011673e-04

Joint ci ratio: 1.090722e-01	ci left: 4.730903e-04	ci right 5.280410e-04	k: 1290	n:2580000
Cons ci ratio: 2.619104e-03	ci left: 4.641320e-01	ci right 4.653495e-01	k: 1199031	n:2580000
KS ci ratio: 1.090722e-01	ci left: 4.730903e-04	ci right 5.280410e-04	k: 1290	n:2580000
KAT2A   2580000 perm   3513 sec   (734 perm/sec)   p_kst 5.000000e-04   p_cons 4.647407e-01   p_joint 5.000000e-04

Joint ci ratio: 1.089458e-01	ci left: 4.723904e-04	ci right 5.271921e-04	k: 1293	n:2590000
Cons ci ratio: 2.614267e-03	ci left: 4.640905e-01	ci right 4.653057e-01	k: 1203568	n:2590000
KS ci ratio: 1.089458e-01	ci left: 4.723904e-04	ci right 5.271921e-04	k: 1293	n:2590000
KAT2A   2590000 perm   3537 sec   (732 perm/sec)   p_kst 4.992278e-04   p_cons 4.646981e-01   p_joint 4.992278e-04

Joint ci ratio: 1.086940e-01	ci left: 4.728184e-04	ci right 5.275349e-04	k: 1299	n:2600000
Cons ci ratio: 2.609158e-03	ci left: 4.641063e-01	ci right 4.653192e-01	k: 1208253	n:2600000
KS ci ratio: 1.086940e-01	ci left: 4.728184e-04	ci right 5.275349e-04	k: 1299	n:2600000
KAT2A   2600000 perm   3562 sec   (730 perm/sec)   p_kst 4.996154e-04   p_cons 4.647127e-01   p_joint 4.996154e-04

Joint ci ratio: 1.084440e-01	ci left: 4.732432e-04	ci right 5.278749e-04	k: 1305	n:2610000
Cons ci ratio: 2.604173e-03	ci left: 4.641040e-01	ci right 4.653145e-01	k: 1212891	n:2610000
KS ci ratio: 1.084440e-01	ci left: 4.732432e-04	ci right 5.278749e-04	k: 1305	n:2610000
KAT2A   2610000 perm   3586 sec   (728 perm/sec)   p_kst 5.000000e-04   p_cons 4.647092e-01   p_joint 5.000000e-04

Joint ci ratio: 1.082371e-01	ci left: 4.732937e-04	ci right 5.278202e-04	k: 1310	n:2620000
Cons ci ratio: 2.599107e-03	ci left: 4.641226e-01	ci right 4.653309e-01	k: 1217584	n:2620000
KS ci ratio: 1.082371e-01	ci left: 4.732937e-04	ci right 5.278202e-04	k: 1310	n:2620000
KAT2A   2620000 perm   3611 sec   (726 perm/sec)   p_kst 5.000000e-04   p_cons 4.647267e-01   p_joint 5.000000e-04

Joint ci ratio: 1.080312e-01	ci left: 4.733438e-04	ci right 5.277658e-04	k: 1315	n:2630000
Cons ci ratio: 2.594201e-03	ci left: 4.641161e-01	ci right 4.653220e-01	k: 1222211	n:2630000
KS ci ratio: 1.080312e-01	ci left: 4.733438e-04	ci right 5.277658e-04	k: 1315	n:2630000
KAT2A   2630000 perm   3636 sec   (723 perm/sec)   p_kst 5.000000e-04   p_cons 4.647190e-01   p_joint 5.000000e-04

Joint ci ratio: 1.078266e-01	ci left: 4.733936e-04	ci right 5.277118e-04	k: 1320	n:2640000
Cons ci ratio: 2.589317e-03	ci left: 4.641107e-01	ci right 4.653144e-01	k: 1226841	n:2640000
KS ci ratio: 1.078266e-01	ci left: 4.733936e-04	ci right 5.277118e-04	k: 1320	n:2640000
KAT2A   2640000 perm   3661 sec   (721 perm/sec)   p_kst 5.000000e-04   p_cons 4.647125e-01   p_joint 5.000000e-04

Joint ci ratio: 1.076231e-01	ci left: 4.734432e-04	ci right 5.276580e-04	k: 1325	n:2650000
Cons ci ratio: 2.584449e-03	ci left: 4.641077e-01	ci right 4.653090e-01	k: 1231477	n:2650000
KS ci ratio: 1.076231e-01	ci left: 4.734432e-04	ci right 5.276580e-04	k: 1325	n:2650000
KAT2A   2650000 perm   3685 sec   (719 perm/sec)   p_kst 5.000000e-04   p_cons 4.647083e-01   p_joint 5.000000e-04

Joint ci ratio: 1.074612e-01	ci left: 4.731266e-04	ci right 5.272185e-04	k: 1329	n:2660000
Cons ci ratio: 2.579446e-03	ci left: 4.641358e-01	ci right 4.653349e-01	k: 1236196	n:2660000
KS ci ratio: 1.074612e-01	ci left: 4.731266e-04	ci right 5.272185e-04	k: 1329	n:2660000
KAT2A   2660000 perm   3710 sec   (717 perm/sec)   p_kst 4.996241e-04   p_cons 4.647353e-01   p_joint 4.996241e-04

Joint ci ratio: 1.071794e-01	ci left: 4.739060e-04	ci right 5.279360e-04	k: 1336	n:2670000
Cons ci ratio: 2.574796e-03	ci left: 4.641012e-01	ci right 4.652981e-01	k: 1240748	n:2670000
KS ci ratio: 1.071794e-01	ci left: 4.739060e-04	ci right 5.279360e-04	k: 1336	n:2670000
KAT2A   2670000 perm   3735 sec   (715 perm/sec)   p_kst 5.003745e-04   p_cons 4.646996e-01   p_joint 5.003745e-04

Joint ci ratio: 1.069397e-01	ci left: 4.743166e-04	ci right 5.282648e-04	k: 1342	n:2680000
Cons ci ratio: 2.569907e-03	ci left: 4.641180e-01	ci right 4.653126e-01	k: 1245437	n:2680000
KS ci ratio: 1.069397e-01	ci left: 4.743166e-04	ci right 5.282648e-04	k: 1342	n:2680000
KAT2A   2680000 perm   3760 sec   (713 perm/sec)   p_kst 5.007463e-04   p_cons 4.647153e-01   p_joint 5.007463e-04

Joint ci ratio: 1.068603e-01	ci left: 4.732769e-04	ci right 5.270644e-04	k: 1344	n:2690000
Cons ci ratio: 2.565097e-03	ci left: 4.641247e-01	ci right 4.653171e-01	k: 1250099	n:2690000
KS ci ratio: 1.068603e-01	ci left: 4.732769e-04	ci right 5.270644e-04	k: 1344	n:2690000
KAT2A   2690000 perm   3785 sec   (711 perm/sec)   p_kst 4.996283e-04   p_cons 4.647208e-01   p_joint 4.996283e-04

Joint ci ratio: 1.066622e-01	ci left: 4.733264e-04	ci right 5.270136e-04	k: 1349	n:2700000
Cons ci ratio: 2.560367e-03	ci left: 4.641209e-01	ci right 4.653111e-01	k: 1254733	n:2700000
KS ci ratio: 1.066622e-01	ci left: 4.733264e-04	ci right 5.270136e-04	k: 1349	n:2700000
KAT2A   2700000 perm   3810 sec   (709 perm/sec)   p_kst 4.996296e-04   p_cons 4.647159e-01   p_joint 4.996296e-04

Joint ci ratio: 1.064652e-01	ci left: 4.733757e-04	ci right 5.269630e-04	k: 1354	n:2710000
Cons ci ratio: 2.555774e-03	ci left: 4.640957e-01	ci right 4.652837e-01	k: 1259309	n:2710000
KS ci ratio: 1.064652e-01	ci left: 4.733757e-04	ci right 5.269630e-04	k: 1354	n:2710000
KAT2A   2710000 perm   3836 sec   (706 perm/sec)   p_kst 4.996310e-04   p_cons 4.646897e-01   p_joint 4.996310e-04

Joint ci ratio: 1.062693e-01	ci left: 4.734247e-04	ci right 5.269128e-04	k: 1359	n:2720000
Cons ci ratio: 2.551171e-03	ci left: 4.640774e-01	ci right 4.652632e-01	k: 1263903	n:2720000
KS ci ratio: 1.062693e-01	ci left: 4.734247e-04	ci right 5.269128e-04	k: 1359	n:2720000
KAT2A   2720000 perm   3863 sec   (704 perm/sec)   p_kst 4.996324e-04   p_cons 4.646702e-01   p_joint 4.996324e-04

Joint ci ratio: 1.059581e-01	ci left: 4.745432e-04	ci right 5.279908e-04	k: 1367	n:2730000
Cons ci ratio: 2.546650e-03	ci left: 4.640482e-01	ci right 4.652318e-01	k: 1268467	n:2730000
KS ci ratio: 1.059581e-01	ci left: 4.745432e-04	ci right 5.279908e-04	k: 1367	n:2730000
KAT2A   2730000 perm   3889 sec   (702 perm/sec)   p_kst 5.007326e-04   p_cons 4.646399e-01   p_joint 5.007326e-04

Joint ci ratio: 1.059582e-01	ci left: 4.728112e-04	ci right 5.260639e-04	k: 1367	n:2740000
Cons ci ratio: 2.542090e-03	ci left: 4.640312e-01	ci right 4.652127e-01	k: 1273064	n:2740000
KS ci ratio: 1.059582e-01	ci left: 4.728112e-04	ci right 5.260639e-04	k: 1367	n:2740000
KAT2A   2740000 perm   3915 sec   (700 perm/sec)   p_kst 4.989051e-04   p_cons 4.646219e-01   p_joint 4.989051e-04

Joint ci ratio: 1.058036e-01	ci left: 4.725079e-04	ci right 5.256440e-04	k: 1371	n:2750000
Cons ci ratio: 2.537539e-03	ci left: 4.640177e-01	ci right 4.651970e-01	k: 1277670	n:2750000
KS ci ratio: 1.058036e-01	ci left: 4.725079e-04	ci right 5.256440e-04	k: 1371	n:2750000
KAT2A   2750000 perm   3944 sec   (697 perm/sec)   p_kst 4.985455e-04   p_cons 4.646073e-01   p_joint 4.985455e-04

Joint ci ratio: 1.055347e-01	ci left: 4.732652e-04	ci right 5.263427e-04	k: 1378	n:2760000
Cons ci ratio: 2.532945e-03	ci left: 4.640173e-01	ci right 4.651944e-01	k: 1282312	n:2760000
KS ci ratio: 1.055347e-01	ci left: 4.732652e-04	ci right 5.263427e-04	k: 1378	n:2760000
KAT2A   2760000 perm   3969 sec   (695 perm/sec)   p_kst 4.992754e-04   p_cons 4.646058e-01   p_joint 4.992754e-04

Joint ci ratio: 1.052678e-01	ci left: 4.740171e-04	ci right 5.270362e-04	k: 1385	n:2770000
Cons ci ratio: 2.528430e-03	ci left: 4.640064e-01	ci right 4.651814e-01	k: 1286925	n:2770000
KS ci ratio: 1.052678e-01	ci left: 4.740171e-04	ci right 5.270362e-04	k: 1385	n:2770000
KAT2A   2770000 perm   3995 sec   (693 perm/sec)   p_kst 5.000000e-04   p_cons 4.645939e-01   p_joint 5.000000e-04

Joint ci ratio: 1.051920e-01	ci left: 4.730125e-04	ci right 5.258788e-04	k: 1387	n:2780000
Cons ci ratio: 2.523752e-03	ci left: 4.640323e-01	ci right 4.652052e-01	k: 1291640	n:2780000
KS ci ratio: 1.051920e-01	ci left: 4.730125e-04	ci right 5.258788e-04	k: 1387	n:2780000
KAT2A   2780000 perm   4021 sec   (691 perm/sec)   p_kst 4.989209e-04   p_cons 4.646187e-01   p_joint 4.989209e-04

Joint ci ratio: 1.051164e-01	ci left: 4.720151e-04	ci right 5.247296e-04	k: 1389	n:2790000
Cons ci ratio: 2.519372e-03	ci left: 4.640042e-01	ci right 4.651750e-01	k: 1296205	n:2790000
KS ci ratio: 1.051164e-01	ci left: 4.720151e-04	ci right 5.247296e-04	k: 1389	n:2790000
KAT2A   2790000 perm   4047 sec   (689 perm/sec)   p_kst 4.978495e-04   p_cons 4.645896e-01   p_joint 4.978495e-04

Joint ci ratio: 1.049655e-01	ci left: 4.717203e-04	ci right 5.243217e-04	k: 1393	n:2800000
Cons ci ratio: 2.514792e-03	ci left: 4.640207e-01	ci right 4.651894e-01	k: 1300894	n:2800000
KS ci ratio: 1.049655e-01	ci left: 4.717203e-04	ci right 5.243217e-04	k: 1393	n:2800000
KAT2A   2800000 perm   4073 sec   (687 perm/sec)   p_kst 4.975000e-04   p_cons 4.646050e-01   p_joint 4.975000e-04

Joint ci ratio: 1.047403e-01	ci left: 4.721209e-04	ci right 5.246469e-04	k: 1399	n:2810000
Cons ci ratio: 2.510175e-03	ci left: 4.640491e-01	ci right 4.652157e-01	k: 1305617	n:2810000
KS ci ratio: 1.047403e-01	ci left: 4.721209e-04	ci right 5.246469e-04	k: 1399	n:2810000
KAT2A   2810000 perm   4100 sec   (685 perm/sec)   p_kst 4.978648e-04   p_cons 4.646324e-01   p_joint 4.978648e-04

Joint ci ratio: 1.044794e-01	ci left: 4.728640e-04	ci right 5.253337e-04	k: 1406	n:2820000
Cons ci ratio: 2.505715e-03	ci left: 4.640511e-01	ci right 4.652157e-01	k: 1310266	n:2820000
KS ci ratio: 1.044794e-01	ci left: 4.728640e-04	ci right 5.253337e-04	k: 1406	n:2820000
KAT2A   2820000 perm   4127 sec   (683 perm/sec)   p_kst 4.985816e-04   p_cons 4.646333e-01   p_joint 4.985816e-04

Joint ci ratio: 1.042942e-01	ci left: 4.729138e-04	ci right 5.252903e-04	k: 1411	n:2830000
Cons ci ratio: 2.501351e-03	ci left: 4.640389e-01	ci right 4.652014e-01	k: 1314875	n:2830000
KS ci ratio: 1.042942e-01	ci left: 4.729138e-04	ci right 5.252903e-04	k: 1411	n:2830000
KAT2A   2830000 perm   4154 sec   (681 perm/sec)   p_kst 4.985866e-04   p_cons 4.646201e-01   p_joint 4.985866e-04

Joint ci ratio: 1.041836e-01	ci left: 4.722774e-04	ci right 5.245245e-04	k: 1414	n:2840000
Cons ci ratio: 2.496931e-03	ci left: 4.640423e-01	ci right 4.652028e-01	k: 1319528	n:2840000
KS ci ratio: 1.041836e-01	ci left: 4.722774e-04	ci right 5.245245e-04	k: 1414	n:2840000
KAT2A   2840000 perm   4181 sec   (679 perm/sec)   p_kst 4.978873e-04   p_cons 4.646225e-01   p_joint 4.978873e-04

Joint ci ratio: 1.040734e-01	ci left: 4.716455e-04	ci right 5.237641e-04	k: 1417	n:2850000
Cons ci ratio: 2.492545e-03	ci left: 4.640436e-01	ci right 4.652021e-01	k: 1324175	n:2850000
KS ci ratio: 1.040734e-01	ci left: 4.716455e-04	ci right 5.237641e-04	k: 1417	n:2850000
KAT2A   2850000 perm   4206 sec   (678 perm/sec)   p_kst 4.971930e-04   p_cons 4.646228e-01   p_joint 4.971930e-04

Joint ci ratio: 1.040002e-01	ci left: 4.706774e-04	ci right 5.226503e-04	k: 1419	n:2860000
Cons ci ratio: 2.488328e-03	ci left: 4.640159e-01	ci right 4.651723e-01	k: 1328739	n:2860000
KS ci ratio: 1.040002e-01	ci left: 4.706774e-04	ci right 5.226503e-04	k: 1419	n:2860000
KAT2A   2860000 perm   4233 sec   (676 perm/sec)   p_kst 4.961538e-04   p_cons 4.645941e-01   p_joint 4.961538e-04

Joint ci ratio: 1.038540e-01	ci left: 4.703950e-04	ci right 5.222592e-04	k: 1423	n:2870000
Cons ci ratio: 2.483839e-03	ci left: 4.640469e-01	ci right 4.652013e-01	k: 1333471	n:2870000
KS ci ratio: 1.038540e-01	ci left: 4.703950e-04	ci right 5.222592e-04	k: 1423	n:2870000
KAT2A   2870000 perm   4260 sec   (674 perm/sec)   p_kst 4.958188e-04   p_cons 4.646240e-01   p_joint 4.958188e-04

Joint ci ratio: 1.035996e-01	ci left: 4.711291e-04	ci right 5.229393e-04	k: 1430	n:2880000
Cons ci ratio: 2.479472e-03	ci left: 4.640582e-01	ci right 4.652106e-01	k: 1338147	n:2880000
KS ci ratio: 1.035996e-01	ci left: 4.711291e-04	ci right 5.229393e-04	k: 1430	n:2880000
KAT2A   2880000 perm   4287 sec   (672 perm/sec)   p_kst 4.965278e-04   p_cons 4.646344e-01   p_joint 4.965278e-04

Joint ci ratio: 1.034552e-01	ci left: 4.708472e-04	ci right 5.225498e-04	k: 1434	n:2890000
Cons ci ratio: 2.475093e-03	ci left: 4.640764e-01	ci right 4.652268e-01	k: 1342843	n:2890000
KS ci ratio: 1.034552e-01	ci left: 4.708472e-04	ci right 5.225498e-04	k: 1434	n:2890000
KAT2A   2890000 perm   4314 sec   (670 perm/sec)   p_kst 4.961938e-04   p_cons 4.646516e-01   p_joint 4.961938e-04

Joint ci ratio: 1.032037e-01	ci left: 4.715750e-04	ci right 5.232240e-04	k: 1441	n:2900000
Cons ci ratio: 2.470733e-03	ci left: 4.640951e-01	ci right 4.652435e-01	k: 1347541	n:2900000
KS ci ratio: 1.032037e-01	ci left: 4.715750e-04	ci right 5.232240e-04	k: 1441	n:2900000
KAT2A   2900000 perm   4342 sec   (668 perm/sec)   p_kst 4.968966e-04   p_cons 4.646693e-01   p_joint 4.968966e-04

Joint ci ratio: 1.030609e-01	ci left: 4.712936e-04	ci right 5.228360e-04	k: 1445	n:2910000
Cons ci ratio: 2.466448e-03	ci left: 4.641035e-01	ci right 4.652499e-01	k: 1352209	n:2910000
KS ci ratio: 1.030609e-01	ci left: 4.712936e-04	ci right 5.228360e-04	k: 1445	n:2910000
KAT2A   2910000 perm   4370 sec   (666 perm/sec)   p_kst 4.965636e-04   p_cons 4.646766e-01   p_joint 4.965636e-04

Joint ci ratio: 1.029187e-01	ci left: 4.710141e-04	ci right 5.224506e-04	k: 1449	n:2920000
Cons ci ratio: 2.462050e-03	ci left: 4.641391e-01	ci right 4.652836e-01	k: 1356957	n:2920000
KS ci ratio: 1.029187e-01	ci left: 4.710141e-04	ci right 5.224506e-04	k: 1449	n:2920000
KAT2A   2920000 perm   4398 sec   (664 perm/sec)   p_kst 4.962329e-04   p_cons 4.647113e-01   p_joint 4.962329e-04

Joint ci ratio: 1.028478e-01	ci left: 4.700716e-04	ci right 5.213677e-04	k: 1451	n:2930000
Cons ci ratio: 2.457815e-03	ci left: 4.641462e-01	ci right 4.652887e-01	k: 1361622	n:2930000
KS ci ratio: 1.028478e-01	ci left: 4.700716e-04	ci right 5.213677e-04	k: 1451	n:2930000
KAT2A   2930000 perm   4427 sec   (662 perm/sec)   p_kst 4.952218e-04   p_cons 4.647174e-01   p_joint 4.952218e-04

Joint ci ratio: 1.028125e-01	ci left: 4.688041e-04	ci right 5.199432e-04	k: 1452	n:2940000
Cons ci ratio: 2.453608e-03	ci left: 4.641519e-01	ci right 4.652924e-01	k: 1366283	n:2940000
KS ci ratio: 1.028125e-01	ci left: 4.688041e-04	ci right 5.199432e-04	k: 1452	n:2940000
KAT2A   2940000 perm   4454 sec   (660 perm/sec)   p_kst 4.938776e-04   p_cons 4.647221e-01   p_joint 4.938776e-04

Joint ci ratio: 1.025657e-01	ci left: 4.695269e-04	ci right 5.206145e-04	k: 1459	n:2950000
Cons ci ratio: 2.449254e-03	ci left: 4.641917e-01	ci right 4.653304e-01	k: 1371045	n:2950000
KS ci ratio: 1.025657e-01	ci left: 4.695269e-04	ci right 5.206145e-04	k: 1459	n:2950000
KAT2A   2950000 perm   4482 sec   (658 perm/sec)   p_kst 4.945763e-04   p_cons 4.647610e-01   p_joint 4.945763e-04

Joint ci ratio: 1.022858e-01	ci left: 4.705741e-04	ci right 5.216275e-04	k: 1467	n:2960000
Cons ci ratio: 2.445055e-03	ci left: 4.642047e-01	ci right 4.653414e-01	k: 1375728	n:2960000
KS ci ratio: 1.022858e-01	ci left: 4.705741e-04	ci right 5.216275e-04	k: 1467	n:2960000
KAT2A   2960000 perm   4511 sec   (656 perm/sec)   p_kst 4.956081e-04   p_cons 4.647730e-01   p_joint 4.956081e-04

Joint ci ratio: 1.021815e-01	ci left: 4.699740e-04	ci right 5.209072e-04	k: 1470	n:2970000
Cons ci ratio: 2.440890e-03	ci left: 4.642148e-01	ci right 4.653496e-01	k: 1380403	n:2970000
KS ci ratio: 1.021815e-01	ci left: 4.699740e-04	ci right 5.209072e-04	k: 1470	n:2970000
KAT2A   2970000 perm   4539 sec   (654 perm/sec)   p_kst 4.949495e-04   p_cons 4.647822e-01   p_joint 4.949495e-04

Joint ci ratio: 1.020775e-01	ci left: 4.693778e-04	ci right 5.201916e-04	k: 1473	n:2980000
Cons ci ratio: 2.436786e-03	ci left: 4.642168e-01	ci right 4.653497e-01	k: 1385054	n:2980000
KS ci ratio: 1.020775e-01	ci left: 4.693778e-04	ci right 5.201916e-04	k: 1473	n:2980000
KAT2A   2980000 perm   4568 sec   (652 perm/sec)   p_kst 4.942953e-04   p_cons 4.647832e-01   p_joint 4.942953e-04

Joint ci ratio: 1.019392e-01	ci left: 4.691117e-04	ci right 5.198237e-04	k: 1477	n:2990000
Cons ci ratio: 2.432756e-03	ci left: 4.642078e-01	ci right 4.653388e-01	k: 1389672	n:2990000
KS ci ratio: 1.019392e-01	ci left: 4.691117e-04	ci right 5.198237e-04	k: 1477	n:2990000
KAT2A   2990000 perm   4596 sec   (651 perm/sec)   p_kst 4.939799e-04   p_cons 4.647732e-01   p_joint 4.939799e-04

Joint ci ratio: 1.016644e-01	ci left: 4.701468e-04	ci right 5.208255e-04	k: 1485	n:3000000
Cons ci ratio: 2.428921e-03	ci left: 4.641632e-01	ci right 4.652923e-01	k: 1394183	n:3000000
KS ci ratio: 1.016644e-01	ci left: 4.701468e-04	ci right 5.208255e-04	k: 1485	n:3000000
KAT2A   3000000 perm   4623 sec   (649 perm/sec)   p_kst 4.950000e-04   p_cons 4.647277e-01   p_joint 4.950000e-04

Joint ci ratio: 1.015279e-01	ci left: 4.698799e-04	ci right 5.204578e-04	k: 1489	n:3010000
Cons ci ratio: 2.424768e-03	ci left: 4.641876e-01	ci right 4.653148e-01	k: 1398901	n:3010000
KS ci ratio: 1.015279e-01	ci left: 4.698799e-04	ci right 5.204578e-04	k: 1489	n:3010000
KAT2A   3010000 perm   4653 sec   (647 perm/sec)   p_kst 4.946844e-04   p_cons 4.647512e-01   p_joint 4.946844e-04

Joint ci ratio: 1.013241e-01	ci left: 4.702604e-04	ci right 5.207716e-04	k: 1495	n:3020000
Cons ci ratio: 2.420743e-03	ci left: 4.641900e-01	ci right 4.653154e-01	k: 1403553	n:3020000
KS ci ratio: 1.013241e-01	ci left: 4.702604e-04	ci right 5.207716e-04	k: 1495	n:3020000
KAT2A   3020000 perm   4681 sec   (645 perm/sec)   p_kst 4.950331e-04   p_cons 4.647526e-01   p_joint 4.950331e-04

Joint ci ratio: 1.011889e-01	ci left: 4.699951e-04	ci right 5.204064e-04	k: 1499	n:3030000
Cons ci ratio: 2.416627e-03	ci left: 4.642152e-01	ci right 4.653387e-01	k: 1408274	n:3030000
KS ci ratio: 1.011889e-01	ci left: 4.699951e-04	ci right 5.204064e-04	k: 1499	n:3030000
KAT2A   3030000 perm   4710 sec   (643 perm/sec)   p_kst 4.947195e-04   p_cons 4.647769e-01   p_joint 4.947195e-04

Joint ci ratio: 1.009536e-01	ci left: 4.706935e-04	ci right 5.210554e-04	k: 1506	n:3040000
Cons ci ratio: 2.412765e-03	ci left: 4.641922e-01	ci right 4.653138e-01	k: 1412849	n:3040000
KS ci ratio: 1.009536e-01	ci left: 4.706935e-04	ci right 5.210554e-04	k: 1506	n:3040000
KAT2A   3040000 perm   4741 sec   (641 perm/sec)   p_kst 4.953947e-04   p_cons 4.647530e-01   p_joint 4.953947e-04

Joint ci ratio: 1.007532e-01	ci left: 4.710678e-04	ci right 5.213638e-04	k: 1512	n:3050000
Cons ci ratio: 2.408768e-03	ci left: 4.642011e-01	ci right 4.653209e-01	k: 1417521	n:3050000
KS ci ratio: 1.007532e-01	ci left: 4.710678e-04	ci right 5.213638e-04	k: 1512	n:3050000
KAT2A   3050000 perm   4769 sec   (640 perm/sec)   p_kst 4.957377e-04   p_cons 4.647610e-01   p_joint 4.957377e-04

Joint ci ratio: 1.005871e-01	ci left: 4.711213e-04	ci right 5.213351e-04	k: 1517	n:3060000
Cons ci ratio: 2.404790e-03	ci left: 4.642100e-01	ci right 4.653280e-01	k: 1422193	n:3060000
KS ci ratio: 1.005871e-01	ci left: 4.711213e-04	ci right 5.213351e-04	k: 1517	n:3060000
KAT2A   3060000 perm   4797 sec   (638 perm/sec)   p_kst 4.957516e-04   p_cons 4.647690e-01   p_joint 4.957516e-04

Joint ci ratio: 1.004549e-01	ci left: 4.708568e-04	ci right 5.209726e-04	k: 1521	n:3070000
Cons ci ratio: 2.400969e-03	ci left: 4.641905e-01	ci right 4.653066e-01	k: 1426778	n:3070000
KS ci ratio: 1.004549e-01	ci left: 4.708568e-04	ci right 5.209726e-04	k: 1521	n:3070000
KAT2A   3070000 perm   4826 sec   (636 perm/sec)   p_kst 4.954397e-04   p_cons 4.647485e-01   p_joint 4.954397e-04

Joint ci ratio: 1.003231e-01	ci left: 4.705942e-04	ci right 5.206125e-04	k: 1525	n:3080000
Cons ci ratio: 2.396889e-03	ci left: 4.642286e-01	ci right 4.653429e-01	k: 1431540	n:3080000
KS ci ratio: 1.003231e-01	ci left: 4.705942e-04	ci right 5.206125e-04	k: 1525	n:3080000
KAT2A   3080000 perm   4856 sec   (634 perm/sec)   p_kst 4.951299e-04   p_cons 4.647857e-01   p_joint 4.951299e-04

Joint ci ratio: 1.000611e-01	ci left: 4.715953e-04	ci right 5.215815e-04	k: 1533	n:3090000
Cons ci ratio: 2.392923e-03	ci left: 4.642470e-01	ci right 4.653595e-01	k: 1436242	n:3090000
KS ci ratio: 1.000611e-01	ci left: 4.715953e-04	ci right 5.215815e-04	k: 1533	n:3090000
KAT2A   3090000 perm   4886 sec   (632 perm/sec)   p_kst 4.961165e-04   p_cons 4.648032e-01   p_joint 4.961165e-04

Joint ci ratio: 9.996348e-02	ci left: 4.710176e-04	ci right 5.208909e-04	k: 1536	n:3100000
Cons ci ratio: 2.389135e-03	ci left: 4.642324e-01	ci right 4.653431e-01	k: 1440842	n:3100000
KS ci ratio: 9.996348e-02	ci left: 4.710176e-04	ci right 5.208909e-04	k: 1536	n:3100000
KAT2A   3100000 perm   4915 sec   (631 perm/sec)   p_kst 4.954839e-04   p_cons 4.647877e-01   p_joint 4.954839e-04

Outputting figure to mutsig2_images.part000000000088/KAT2A.2_2586_3100000_0.00049548_0.46479_0.00049548.png
                gene_name: KAT2A
               theta_stop: 0.100 
                    nperm: 3100000 
                     p_ks: 0.00050 
        ci_ks_bounds_left: 0.00047 
       ci_ks_bounds_right: 0.00052 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.00050 
     ci_joint_bounds_left: 0.00047 
    ci_joint_bounds_right: 0.00052 

Current progress: 50 percent done.
KCNB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.196217e-02	ci left: 3.531686e-01	ci right 3.721115e-01	k: 3626	n:10000
KS ci ratio: 2.021124e-02	ci left: 7.818830e-01	ci right 7.979478e-01	k: 7900	n:10000
KCNB1   10000 perm   2 sec   (5659 perm/sec)   p_kst 7.900000e-01   p_cons 3.626000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KCNB1.2_2585_10000_0.79_0.3626_1.png
                gene_name: KCNB1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
KCNB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.091164e-01	ci left: 1.080293e-01	ci right 1.205964e-01	k: 1142	n:10000
KS ci ratio: 6.403307e-02	ci left: 2.637906e-01	ci right 2.813421e-01	k: 2725	n:10000
KCNB2   10000 perm   2 sec   (5421 perm/sec)   p_kst 2.725000e-01   p_cons 1.142000e-01   p_joint 1

Joint ci ratio: 3.967065e-02	ci left: 3.214938e-01	ci right 3.345563e-01	k: 6560	n:20000
Cons ci ratio: 7.791074e-02	ci left: 1.079558e-01	ci right 1.167573e-01	k: 2246	n:20000
KS ci ratio: 4.480938e-02	ci left: 2.705077e-01	ci right 2.829572e-01	k: 5534	n:20000
KCNB2   20000 perm   4 sec   (4869 perm/sec)   p_kst 2.767000e-01   p_cons 1.123000e-01   p_joint 3.280000e-01

Outputting figure to mutsig2_images.part000000000088/KCNB2.2_2744_20000_0.2767_0.1123_0.328.png
                gene_name: KCNB2
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 75 percent done.
KCND3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.427666e-01	ci left: 6.507499e-02	ci right 7.517717e-02	k: 700	n:10000
Cons ci ratio: 2.089368e-01	ci left: 3.043932e-02	ci right 3.763545e-02	k: 339	n:10000
KS ci ratio: 2.410536e-02	ci left: 7.167396e-01	ci right 7.343289e-01	k: 7256	n:10000
KCND3   10000 perm   2 sec   (6086 perm/sec)   p_kst 7.256000e-01   p_cons 3.390000e-02   p_joint 7.000000e-02

Joint ci ratio: 8.513080e-02	ci left: 9.175502e-02	ci right 9.996291e-02	k: 1916	n:20000
Cons ci ratio: 1.481959e-01	ci left: 3.129024e-02	ci right 3.634648e-02	k: 675	n:20000
KS ci ratio: 1.697263e-02	ci left: 7.210702e-01	ci right 7.334637e-01	k: 14546	n:20000
KCND3   20000 perm   4 sec   (5331 perm/sec)   p_kst 7.273000e-01   p_cons 3.375000e-02   p_joint 9.580000e-02

Joint ci ratio: 7.820985e-02	ci left: 7.423681e-02	ci right 8.031202e-02	k: 2317	n:30000
Cons ci ratio: 1.214993e-01	ci left: 3.149246e-02	ci right 3.559852e-02	k: 1005	n:30000
KS ci ratio: 1.386633e-02	ci left: 7.219873e-01	ci right 7.321020e-01	k: 21812	n:30000
KCND3   30000 perm   6 sec   (5012 perm/sec)   p_kst 7.270667e-01   p_cons 3.350000e-02   p_joint 7.723333e-02

Joint ci ratio: 5.954659e-02	ci left: 9.483179e-02	ci right 1.006768e-01	k: 3909	n:40000
Cons ci ratio: 1.045118e-01	ci left: 3.219665e-02	ci right 3.577142e-02	k: 1358	n:40000
KS ci ratio: 1.193125e-02	ci left: 7.252433e-01	ci right 7.339733e-01	k: 29185	n:40000
KCND3   40000 perm   8 sec   (4834 perm/sec)   p_kst 7.296250e-01   p_cons 3.395000e-02   p_joint 9.772500e-02

Joint ci ratio: 5.340868e-02	ci left: 9.465643e-02	ci right 9.987043e-02	k: 4862	n:50000
Cons ci ratio: 9.401688e-02	ci left: 3.201811e-02	ci right 3.519634e-02	k: 1679	n:50000
KS ci ratio: 1.065826e-02	ci left: 7.262059e-01	ci right 7.340074e-01	k: 36506	n:50000
KCND3   50000 perm   11 sec   (4705 perm/sec)   p_kst 7.301200e-01   p_cons 3.358000e-02   p_joint 9.724000e-02

Outputting figure to mutsig2_images.part000000000088/KCND3.2_1996_50000_0.73012_0.03358_0.09724.png
                gene_name: KCND3
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.032 
     ci_cons_bounds_right: 0.035 
                  p_joint: 0.097 
     ci_joint_bounds_left: 0.095 
    ci_joint_bounds_right: 0.100 

Current progress: 88 percent done.
KCNG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.942301e-02	ci left: 7.949654e-01	ci right 8.106578e-01	k: 8029	n:10000
Cons ci ratio: 2.680273e-02	ci left: 6.721660e-01	ci right 6.905282e-01	k: 6814	n:10000
KS ci ratio: 1.338395e-01	ci left: 7.368948e-02	ci right 8.435729e-02	k: 789	n:10000
KCNG1   10000 perm   2 sec   (6069 perm/sec)   p_kst 7.890000e-02   p_cons 6.814000e-01   p_joint 8.029000e-01

Joint ci ratio: 9.533222e-03	ci left: 8.899056e-01	ci right 8.984794e-01	k: 17885	n:20000
Cons ci ratio: 1.908190e-02	ci left: 6.719263e-01	ci right 6.849218e-01	k: 13569	n:20000
KS ci ratio: 9.320713e-02	ci left: 7.745059e-02	ci right 8.507167e-02	k: 1624	n:20000
KCNG1   20000 perm   4 sec   (5248 perm/sec)   p_kst 8.120000e-02   p_cons 6.784500e-01   p_joint 8.942500e-01

Outputting figure to mutsig2_images.part000000000088/KCNG1.2_1550_20000_0.0812_0.67845_0.89425.png
                gene_name: KCNG1
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000088
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 88 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1431>
Subject: Job 9877411: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1431>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000089> was used as the working directory.
Started at Fri Oct  5 22:44:54 2012
Results reported at Fri Oct  5 22:48:25 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000089.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000089.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 89  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000089.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    136.97 sec.
    Max Memory :      1878 MB
    Max Swap   :      4558 MB

    Max Processes  :         7
    Max Threads    :        55

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
89
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 89
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 89: processing genes 7980 - 8070
Calculating significance of each gene.
Using projection method.
7980	KCNJ9	1
7981	KCNK1	1
7982	KCNK10	1
7983	KCNK12	1
7984	KCNK13	1
7985	KCNK15	1
7986	KCNK16	1
7987	KCNK17	1
7988	KCNK18	1
7989	KCNK2	1
7990	KCNK3	1
7991	KCNK4	1
7992	KCNK5	1
In gene KCNK6 the following bins exceed PROBCAP:
    PRAD-EJ-5542	categ 6	N = 773     n = 1	mu =   1.32e-07
7993	KCNK6	1.145847e-02
7994	KCNK7	1
7995	KCNK9	9.352534e-02
7996	KCNMA1	2.380467e-01
7997	KCNMB1	1
7998	KCNMB2	1
7999	KCNMB3	1
8000/18134 8000	KCNMB4	1
8001	KCNN1	1
8002	KCNN2	1.950994e-01
8003	KCNN3	1
8004	KCNN4	1
8005	KCNQ1	8.325245e-02
8006	KCNQ2	1
8007	KCNQ3	1
8008	KCNQ4	1
8009	KCNQ5	1
8010	KCNRG	1
8011	KCNS1	1
8012	KCNS2	1
8013	KCNS3	1
8014	KCNT1	1
8015	KCNT2	1.251967e-01
8016	KCNU1	1
8017	KCNV1	1
8018	KCNV2	1
8019	KCTD1	1
8020	KCTD10	1.283436e-01
8021	KCTD11	1
8022	KCTD12	1
8023	KCTD13	1
8024	KCTD14	1
8025	KCTD15	1
8026	KCTD16	5.368696e-02
8027	KCTD17	1
8028	KCTD18	1
8029	KCTD19	1
8030	KCTD2	1
8031	KCTD20	1
8032	KCTD21	1
8033	KCTD3	1
8034	KCTD4	1
8035	KCTD5	1
8036	KCTD6	1
8037	KCTD7	1
8038	KCTD8	1
8039	KCTD9	1
8040	KDELC1	1
8041	KDELC2	1
8042	KDELR1	1
8043	KDELR2	1
8044	KDELR3	1
8045	KDM1A	1
8046	KDM1B	1
8047	KDM2A	1
8048	KDM2B	1
8049	KDM3A	2.636220e-01
8050	KDM3B	1
8051	KDM4A	1
8052	KDM4B	1
8053	KDM4C	1
8054	KDM4D	1
8055	KDM4DL	1
8056	KDM5A	4.167192e-01
8057	KDM5B	1
8058	KDM5C	1
8059	KDM5D	1
8060	KDM6A	2.293606e-01
8061	KDM6B	1
8062	KDR	7.189991e-02
8063	KDSR	1
8064	KEAP1	1.142707e-01
8065	KEL	1
8066	KERA	1
8067	KHDC1	1
8068	KHDC1L	1
8069	KHDRBS1	1
8070	KHDRBS2	1
Done

Running MutSig 2:
Scatter job 89: processing genes 7980 - 8070
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
KDR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.213329e-02	ci left: 4.540875e-01	ci right 4.737336e-01	k: 4639	n:10000
KS ci ratio: 2.036337e-02	ci left: 7.793491e-01	ci right 7.954831e-01	k: 7875	n:10000
KDR   10000 perm   3 sec   (3151 perm/sec)   p_kst 7.875000e-01   p_cons 4.639000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000089/KDR.2_4191_10000_0.7875_0.4639_1.png
                gene_name: KDR
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000089
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 89 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1538>
Subject: Job 9877420: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1538>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000090> was used as the working directory.
Started at Fri Oct  5 22:44:54 2012
Results reported at Fri Oct  5 22:47:35 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000090.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000090.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 90  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000090.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    177.95 sec.
    Max Memory :      2301 MB
    Max Swap   :      4697 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
90
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 90
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 90: processing genes 8071 - 8160
Calculating significance of each gene.
Using projection method.
8071	KHDRBS3	1.130813e-01
8072	KHK	1
8073	KHNYN	1.968980e-01
8074	KHSRP	1
8075	KIAA0020	1
8076	KIAA0090	1
8077	KIAA0100	1
8078	KIAA0101	1
8079	KIAA0141	1
8080	KIAA0146	1
8081	KIAA0174	1
8082	KIAA0182	1.255133e-01
8083	KIAA0195	1
8084	KIAA0196	1
8085	KIAA0226	1
8086	KIAA0232	1
8087	KIAA0240	2.458123e-01
8088	KIAA0247	1
8089	KIAA0284	1
8090	KIAA0317	1
8091	KIAA0319	1
8092	KIAA0319L	1.159317e-01
8093	KIAA0355	1.230579e-01
8094	KIAA0368	1
8095	KIAA0391	1
8096	KIAA0406	1
8097	KIAA0408	1
8098	KIAA0415	1
8099	KIAA0427	1
8100	KIAA0430	1
8101	KIAA0467	2.674019e-01
8102	KIAA0494	9.603457e-02
8103	KIAA0495	1
8104	KIAA0513	1
8105	KIAA0528	1
8106	KIAA0556	1.543149e-01
8107	KIAA0562	1
8108	KIAA0564	1
8109	KIAA0586	7.785093e-02
8110	KIAA0649	1
8111	KIAA0652	1.531015e-01
8112	KIAA0664	1
8113	KIAA0748	1
8114	KIAA0753	1.611085e-01
8115	KIAA0754	8.431335e-03
8116	KIAA0776	1
8117	KIAA0802	1.338173e-01
8118	KIAA0831	1
8119	KIAA0892	1
8120	KIAA0895	1.373923e-01
8121	KIAA0895L	1
8122	KIAA0907	1
8123	KIAA0913	1
8124	KIAA0922	1
8125	KIAA0947	1
8126	KIAA1009	1
8127	KIAA1012	1
8128	KIAA1024	1
8129	KIAA1033	1
8130	KIAA1045	1.445010e-01
8131	KIAA1109	1
8132	KIAA1143	1
8133	KIAA1147	1
8134	KIAA1161	1
8135	KIAA1191	1
8136	KIAA1199	1.675935e-01
8137	KIAA1210	1
8138	KIAA1211	1
8139	KIAA1217	7.831139e-02
8140	KIAA1244	1
8141	KIAA1257	1
8142	KIAA1267	2.560399e-01
8143	KIAA1274	3.040620e-01
8144	KIAA1279	1
8145	KIAA1310	1
8146	KIAA1324	1
8147	KIAA1324L	2.788250e-03
8148	KIAA1328	1
8149	KIAA1370	4.727105e-02
8150	KIAA1377	2.087817e-01
8151	KIAA1383	1
8152	KIAA1407	1
8153	KIAA1409	2.372309e-01
8154	KIAA1429	1
8155	KIAA1430	1
8156	KIAA1432	1
8157	KIAA1462	1
8158	KIAA1467	5.793341e-02
8159	KIAA1468	1
8160	KIAA1486	1
Done

Running MutSig 2:
Scatter job 90: processing genes 8071 - 8160
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
KIAA0754
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.292716e-01	ci left: 2.513779e-02	ci right 3.174074e-02	k: 283	n:10000
Cons ci ratio: 3.411267e-02	ci left: 5.592250e-01	ci right 5.787348e-01	k: 5690	n:10000
KS ci ratio: 2.138699e-01	ci left: 2.901644e-02	ci right 3.605933e-02	k: 324	n:10000
KIAA0754   10000 perm   3 sec   (3330 perm/sec)   p_kst 3.240000e-02   p_cons 5.690000e-01   p_joint 2.830000e-02

Joint ci ratio: 1.591209e-01	ci left: 2.710248e-02	ci right 3.183564e-02	k: 588	n:20000
Cons ci ratio: 2.422620e-02	ci left: 5.599985e-01	ci right 5.737821e-01	k: 11338	n:20000
KS ci ratio: 1.524487e-01	ci left: 2.955589e-02	ci right 3.448140e-02	k: 639	n:20000
KIAA0754   20000 perm   8 sec   (2363 perm/sec)   p_kst 3.195000e-02   p_cons 5.669000e-01   p_joint 2.940000e-02

Joint ci ratio: 1.343342e-01	ci left: 2.574314e-02	ci right 2.948243e-02	k: 827	n:30000
Cons ci ratio: 1.970861e-02	ci left: 5.630726e-01	ci right 5.743141e-01	k: 17061	n:30000
KS ci ratio: 1.236785e-01	ci left: 3.039280e-02	ci right 3.443175e-02	k: 971	n:30000
KIAA0754   30000 perm   11 sec   (2707 perm/sec)   p_kst 3.236667e-02   p_cons 5.687000e-01   p_joint 2.756667e-02

Joint ci ratio: 1.288212e-01	ci left: 2.116574e-02	ci right 2.410413e-02	k: 904	n:40000
Cons ci ratio: 1.702835e-02	ci left: 5.649807e-01	ci right 5.747091e-01	k: 22794	n:40000
KS ci ratio: 1.085013e-01	ci left: 2.988292e-02	ci right 3.333552e-02	k: 1263	n:40000
KIAA0754   40000 perm   14 sec   (2920 perm/sec)   p_kst 3.157500e-02   p_cons 5.698500e-01   p_joint 2.260000e-02

Joint ci ratio: 1.102500e-01	ci left: 2.329882e-02	ci right 2.603675e-02	k: 1232	n:50000
Cons ci ratio: 1.522854e-02	ci left: 5.655665e-01	ci right 5.742654e-01	k: 28496	n:50000
KS ci ratio: 9.733335e-02	ci left: 2.988863e-02	ci right 3.296609e-02	k: 1570	n:50000
KIAA0754   50000 perm   16 sec   (3041 perm/sec)   p_kst 3.140000e-02   p_cons 5.699200e-01   p_joint 2.464000e-02

Joint ci ratio: 9.718413e-02	ci left: 2.511552e-02	ci right 2.769723e-02	k: 1583	n:60000
Cons ci ratio: 1.384427e-02	ci left: 5.679791e-01	ci right 5.759139e-01	k: 34317	n:60000
KS ci ratio: 8.902860e-02	ci left: 2.990478e-02	ci right 3.270746e-02	k: 1877	n:60000
KIAA0754   60000 perm   19 sec   (3120 perm/sec)   p_kst 3.128333e-02   p_cons 5.719500e-01   p_joint 2.638333e-02

Outputting figure to mutsig2_images.part000000000090/KIAA0754.2_4288_60000_0.031283_0.57195_0.026383.png
                gene_name: KIAA0754
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.028 

Current progress: 17 percent done.
KIAA0802
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.212332e-02	ci left: 5.885136e-01	ci right 6.078292e-01	k: 5982	n:10000
KS ci ratio: 4.045260e-02	ci left: 4.743609e-01	ci right 4.940483e-01	k: 4842	n:10000
KIAA0802   10000 perm   2 sec   (4539 perm/sec)   p_kst 4.842000e-01   p_cons 5.982000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000090/KIAA0802.2_4817_10000_0.4842_0.5982_1.png
                gene_name: KIAA0802
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
KIAA1217
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.480061e-02	ci left: 2.591396e-01	ci right 2.765958e-01	k: 2678	n:10000
Cons ci ratio: 1.269027e-01	ci left: 8.154699e-02	ci right 9.269490e-02	k: 870	n:10000
KS ci ratio: 2.093398e-02	ci left: 7.698255e-01	ci right 7.862122e-01	k: 7781	n:10000
KIAA1217   10000 perm   2 sec   (4078 perm/sec)   p_kst 7.781000e-01   p_cons 8.700000e-02   p_joint 2.678000e-01

Joint ci ratio: 4.261955e-02	ci left: 2.908709e-01	ci right 3.035881e-01	k: 5944	n:20000
Cons ci ratio: 9.237437e-02	ci left: 7.877186e-02	ci right 8.645000e-02	k: 1651	n:20000
KS ci ratio: 1.508934e-02	ci left: 7.655159e-01	ci right 7.772051e-01	k: 15428	n:20000
KIAA1217   20000 perm   5 sec   (3667 perm/sec)   p_kst 7.714000e-01   p_cons 8.255000e-02   p_joint 2.972000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1217.2_5916_20000_0.7714_0.08255_0.2972.png
                gene_name: KIAA1217
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.079 
     ci_cons_bounds_right: 0.086 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 50 percent done.
KIAA1324L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.541190e-03	ci left: 9.775957e-01	ci right 9.831195e-01	k: 9805	n:10000
Cons ci ratio: 3.478503e-02	ci left: 5.496035e-01	ci right 5.691619e-01	k: 5594	n:10000
KS ci ratio: 3.395300e-02	ci left: 5.615307e-01	ci right 5.810277e-01	k: 5713	n:10000
KIAA1324L   10000 perm   2 sec   (5346 perm/sec)   p_kst 5.713000e-01   p_cons 5.594000e-01   p_joint 9.805000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1324L.2_3178_10000_0.5713_0.5594_0.9805.png
                gene_name: KIAA1324L
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 67 percent done.
KIAA1370
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.944842e-02	ci left: 6.296981e-01	ci right 6.486207e-01	k: 6392	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
KIAA1370   10000 perm   2 sec   (5316 perm/sec)   p_kst 1   p_cons 6.392000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000090/KIAA1370.2_3279_10000_1_0.6392_1.png
                gene_name: KIAA1370
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
KIAA1409
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.708704e-02	ci left: 6.675328e-01	ci right 6.859641e-01	k: 6768	n:10000
Cons ci ratio: 4.294682e-02	ci left: 4.446055e-01	ci right 4.642211e-01	k: 4544	n:10000
KS ci ratio: 4.636081e-02	ci left: 4.071122e-01	ci right 4.265363e-01	k: 4168	n:10000
KIAA1409   10000 perm   3 sec   (3709 perm/sec)   p_kst 4.168000e-01   p_cons 4.544000e-01   p_joint 6.768000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1409.2_7565_10000_0.4168_0.4544_0.6768.png
                gene_name: KIAA1409
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000090
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 90 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1712>
Subject: Job 9877435: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1712>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000091> was used as the working directory.
Started at Fri Oct  5 22:44:54 2012
Results reported at Fri Oct  5 22:47:39 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000091.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000091.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 91  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000091.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    158.58 sec.
    Max Memory :      2132 MB
    Max Swap   :      4734 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
91
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 91
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 91: processing genes 8161 - 8251
Calculating significance of each gene.
Using projection method.
8161	KIAA1522	1
8162	KIAA1524	1
8163	KIAA1529	1
8164	KIAA1530	1
8165	KIAA1539	1.567354e-01
8166	KIAA1543	1
8167	KIAA1549	4.915724e-01
8168	KIAA1586	1
8169	KIAA1598	1
8170	KIAA1609	1.178302e-01
8171	KIAA1614	1
8172	KIAA1632	3.100658e-01
8173	KIAA1644	1
8174	KIAA1683	1
8175	KIAA1704	2.483125e-02
8176	KIAA1712	1
8177	KIAA1715	1
8178	KIAA1737	1
8179	KIAA1751	1
8180	KIAA1755	1
8181	KIAA1797	1
8182	KIAA1804	1
8183	KIAA1826	1
8184	KIAA1841	1
8185	KIAA1919	1
8186	KIAA1949	1
8187	KIAA1958	1
8188	KIAA1967	1
8189	KIAA1984	1
8190	KIAA2013	1
8191	KIAA2018	1
8192	KIAA2022	1
8193	KIAA2026	3.804718e-01
8194	KIDINS220	1
8195	KIF11	9.798934e-02
8196	KIF12	1
8197	KIF13A	1
8198	KIF13B	1
8199	KIF14	3.498429e-01
8200	KIF15	1
In gene KIF16B the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 4007    n = 1	mu =   6.75e-07
8201	KIF16B	3.335455e-01
8202	KIF17	1
8203	KIF18A	1
8204	KIF18B	1
8205	KIF19	1
8206	KIF1A	4.152502e-01
8207	KIF1B	1
8208	KIF1C	1
8209	KIF20A	1
8210	KIF20B	3.847860e-01
8211	KIF21A	1
8212	KIF21B	1.272213e-01
8213	KIF22	1
8214	KIF23	2.333242e-02
8215	KIF24	1.376944e-01
8216	KIF25	1.344388e-01
8217	KIF26A	1
8218	KIF26B	1
8219	KIF27	1
8220	KIF2A	1
8221	KIF2B	2.242680e-01
8222	KIF2C	1
8223	KIF3A	1
8224	KIF3B	6.387998e-03
8225	KIF3C	1
8226	KIF4A	1
8227	KIF4B	1
8228	KIF5A	1
8229	KIF5B	1
8230	KIF5C	1
8231	KIF6	1
8232	KIF7	1
8233	KIF9	1
8234	KIFAP3	1
8235	KIFC1	6.107598e-02
8236	KIFC2	8.285896e-02
8237	KIFC3	1
8238	KIN	1
8239	KIR2DL1	1
8240	KIR2DL3	1
8241	KIR2DL4	1
8242	KIR2DS4	1
8243	KIR3DL1	1.247765e-01
8244	KIR3DL2	1
8245	KIR3DL3	1
8246	KIR3DP1	1
8247	KIRREL	2.138303e-02
8248	KIRREL2	1
8249	KIRREL3	1
8250	KISS1	1
8251	KIT	1
Done

Running MutSig 2:
Scatter job 91: processing genes 8161 - 8251
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
KIF21B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.513557e-02	ci left: 8.635571e-01	ci right 8.768264e-01	k: 8703	n:10000
Cons ci ratio: 5.091734e-03	ci left: 9.808076e-01	ci right 9.859052e-01	k: 9835	n:10000
KS ci ratio: 2.207059e-02	ci left: 7.507962e-01	ci right 7.676526e-01	k: 7593	n:10000
KIF21B   10000 perm   2 sec   (4186 perm/sec)   p_kst 7.593000e-01   p_cons 9.835000e-01   p_joint 8.703000e-01

Outputting figure to mutsig2_images.part000000000091/KIF21B.2_5011_10000_0.7593_0.9835_0.8703.png
                gene_name: KIF21B
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 25 percent done.
KIF23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.609546e-02	ci left: 6.837536e-01	ci right 7.019339e-01	k: 6929	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
KIF23   10000 perm   2 sec   (5193 perm/sec)   p_kst 1   p_cons 6.929000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000091/KIF23.2_2975_10000_1_0.6929_1.png
                gene_name: KIF23
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
KIF3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.468101e-02	ci left: 7.071507e-01	ci right 7.249233e-01	k: 7161	n:10000
Cons ci ratio: 6.375972e-02	ci left: 2.654732e-01	ci right 2.830585e-01	k: 2742	n:10000
KS ci ratio: 4.401013e-02	ci left: 4.325336e-01	ci right 4.521000e-01	k: 4423	n:10000
KIF3B   10000 perm   2 sec   (5871 perm/sec)   p_kst 4.423000e-01   p_cons 2.742000e-01   p_joint 7.161000e-01

Outputting figure to mutsig2_images.part000000000091/KIF3B.2_2276_10000_0.4423_0.2742_0.7161.png
                gene_name: KIF3B
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 75 percent done.
KIRREL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.888568e-01	ci left: 3.738868e-02	ci right 4.528136e-02	k: 412	n:10000
Cons ci ratio: 3.007806e-01	ci left: 1.418736e-02	ci right 1.929975e-02	k: 166	n:10000
KS ci ratio: 3.562533e-02	ci left: 5.377820e-01	ci right 5.573903e-01	k: 5476	n:10000
KIRREL   10000 perm   2 sec   (5407 perm/sec)   p_kst 5.476000e-01   p_cons 1.660000e-02   p_joint 4.120000e-02

Joint ci ratio: 1.407181e-01	ci left: 3.471622e-02	ci right 4.001937e-02	k: 746	n:20000
Cons ci ratio: 2.173693e-01	ci left: 1.425935e-02	ci right 1.778339e-02	k: 319	n:20000
KS ci ratio: 2.499490e-02	ci left: 5.445753e-01	ci right 5.584098e-01	k: 11030	n:20000
KIRREL   20000 perm   4 sec   (5072 perm/sec)   p_kst 5.515000e-01   p_cons 1.595000e-02   p_joint 3.730000e-02

Joint ci ratio: 1.304178e-01	ci left: 2.732382e-02	ci right 3.116807e-02	k: 876	n:30000
Cons ci ratio: 1.790047e-01	ci left: 1.432368e-02	ci right 1.717122e-02	k: 471	n:30000
KS ci ratio: 2.041970e-02	ci left: 5.455838e-01	ci right 5.568730e-01	k: 16537	n:30000
KIRREL   30000 perm   6 sec   (4909 perm/sec)   p_kst 5.512333e-01   p_cons 1.570000e-02   p_joint 2.920000e-02

Joint ci ratio: 1.271773e-01	ci left: 2.172272e-02	ci right 2.469705e-02	k: 927	n:40000
Cons ci ratio: 1.576307e-01	ci left: 1.402381e-02	ci right 1.644731e-02	k: 608	n:40000
KS ci ratio: 1.773008e-02	ci left: 5.450586e-01	ci right 5.548341e-01	k: 21998	n:40000
KIRREL   40000 perm   8 sec   (4732 perm/sec)   p_kst 5.499500e-01   p_cons 1.520000e-02   p_joint 2.317500e-02

Joint ci ratio: 9.364263e-02	ci left: 3.227221e-02	ci right 3.546221e-02	k: 1692	n:50000
Cons ci ratio: 1.409190e-01	ci left: 1.416512e-02	ci right 1.633170e-02	k: 761	n:50000
KS ci ratio: 1.588049e-02	ci left: 5.448860e-01	ci right 5.536283e-01	k: 27463	n:50000
KIRREL   50000 perm   11 sec   (4563 perm/sec)   p_kst 5.492600e-01   p_cons 1.522000e-02   p_joint 3.384000e-02

Joint ci ratio: 1.471877e-01	ci left: 1.082281e-02	ci right 1.255824e-02	k: 700	n:60000
Cons ci ratio: 1.660757e-01	ci left: 8.435560e-03	ci right 9.979140e-03	k: 551	n:60000
KS ci ratio: 1.447135e-02	ci left: 5.461421e-01	ci right 5.541198e-01	k: 33008	n:60000
KIRREL   60000 perm   14 sec   (4406 perm/sec)   p_kst 5.501333e-01   p_cons 9.183333e-03   p_joint 1.166667e-02

Joint ci ratio: 1.376238e-01	ci left: 1.066812e-02	ci right 1.225847e-02	k: 801	n:70000
Cons ci ratio: 1.530384e-01	ci left: 8.574699e-03	ci right 1.000928e-02	k: 649	n:70000
KS ci ratio: 1.340422e-02	ci left: 5.462054e-01	ci right 5.535905e-01	k: 38493	n:70000
KIRREL   70000 perm   16 sec   (4316 perm/sec)   p_kst 5.499000e-01   p_cons 9.271429e-03   p_joint 1.144286e-02

Joint ci ratio: 1.285632e-01	ci left: 1.074848e-02	ci right 1.223726e-02	k: 918	n:80000
Cons ci ratio: 1.437275e-01	ci left: 8.550004e-03	ci right 9.885951e-03	k: 736	n:80000
KS ci ratio: 1.253315e-02	ci left: 5.466572e-01	ci right 5.535642e-01	k: 44009	n:80000
KIRREL   80000 perm   19 sec   (4250 perm/sec)   p_kst 5.501125e-01   p_cons 9.200000e-03   p_joint 1.147500e-02

Joint ci ratio: 1.215605e-01	ci left: 1.072743e-02	ci right 1.212654e-02	k: 1027	n:90000
Cons ci ratio: 1.359324e-01	ci left: 8.532864e-03	ci right 9.787968e-03	k: 823	n:90000
KS ci ratio: 1.180608e-02	ci left: 5.472874e-01	ci right 5.537982e-01	k: 49549	n:90000
KIRREL   90000 perm   21 sec   (4187 perm/sec)   p_kst 5.505444e-01   p_cons 9.144444e-03   p_joint 1.141111e-02

Joint ci ratio: 1.144750e-01	ci left: 1.092610e-02	ci right 1.226245e-02	k: 1158	n:100000
Cons ci ratio: 1.278035e-01	ci left: 8.724026e-03	ci right 9.924693e-03	k: 931	n:100000
KS ci ratio: 1.120216e-02	ci left: 5.473704e-01	ci right 5.535467e-01	k: 55046	n:100000
KIRREL   100000 perm   24 sec   (4119 perm/sec)   p_kst 5.504600e-01   p_cons 9.310000e-03   p_joint 1.158000e-02

Joint ci ratio: 1.069988e-01	ci left: 1.140914e-02	ci right 1.270769e-02	k: 1325	n:110000
Cons ci ratio: 1.218079e-01	ci left: 8.758817e-03	ci right 9.903641e-03	k: 1025	n:110000
KS ci ratio: 1.070198e-02	ci left: 5.465357e-01	ci right 5.524253e-01	k: 60443	n:110000
KIRREL   110000 perm   27 sec   (4031 perm/sec)   p_kst 5.494818e-01   p_cons 9.318182e-03   p_joint 1.204545e-02

Joint ci ratio: 1.017532e-01	ci left: 1.159465e-02	ci right 1.284575e-02	k: 1465	n:120000
Cons ci ratio: 1.159586e-01	ci left: 8.886023e-03	ci right 9.987879e-03	k: 1131	n:120000
KS ci ratio: 1.026187e-02	ci left: 5.459125e-01	ci right 5.515518e-01	k: 65848	n:120000
KIRREL   120000 perm   30 sec   (3947 perm/sec)   p_kst 5.487333e-01   p_cons 9.425000e-03   p_joint 1.220833e-02

Joint ci ratio: 9.942781e-02	ci left: 1.122756e-02	ci right 1.240975e-02	k: 1535	n:130000
Cons ci ratio: 1.115626e-01	ci left: 8.882566e-03	ci right 9.939490e-03	k: 1222	n:130000
KS ci ratio: 9.863331e-03	ci left: 5.458207e-01	ci right 5.512387e-01	k: 71309	n:130000
KIRREL   130000 perm   34 sec   (3858 perm/sec)   p_kst 5.485308e-01   p_cons 9.400000e-03   p_joint 1.180769e-02

Joint ci ratio: 9.602140e-02	ci left: 1.119907e-02	ci right 1.233557e-02	k: 1646	n:140000
Cons ci ratio: 1.077142e-01	ci left: 8.866376e-03	ci right 9.882671e-03	k: 1311	n:140000
KS ci ratio: 9.515152e-03	ci left: 5.453670e-01	ci right 5.505882e-01	k: 76717	n:140000
KIRREL   140000 perm   37 sec   (3783 perm/sec)   p_kst 5.479786e-01   p_cons 9.364286e-03   p_joint 1.175714e-02

Joint ci ratio: 9.257043e-02	ci left: 1.126616e-02	ci right 1.236616e-02	k: 1771	n:150000
Cons ci ratio: 1.039021e-01	ci left: 8.911340e-03	ci right 9.894430e-03	k: 1409	n:150000
KS ci ratio: 9.194716e-03	ci left: 5.453371e-01	ci right 5.503811e-01	k: 82179	n:150000
KIRREL   150000 perm   40 sec   (3715 perm/sec)   p_kst 5.478600e-01   p_cons 9.393333e-03   p_joint 1.180667e-02

Joint ci ratio: 8.946664e-02	ci left: 1.132551e-02	ci right 1.239229e-02	k: 1896	n:160000
Cons ci ratio: 1.003337e-01	ci left: 8.975616e-03	ci right 9.929786e-03	k: 1511	n:160000
KS ci ratio: 8.902705e-03	ci left: 5.454198e-01	ci right 5.503034e-01	k: 87658	n:160000
KIRREL   160000 perm   44 sec   (3642 perm/sec)   p_kst 5.478625e-01   p_cons 9.443750e-03   p_joint 1.185000e-02

Joint ci ratio: 8.698258e-02	ci left: 1.129208e-02	ci right 1.232467e-02	k: 2006	n:170000
Cons ci ratio: 9.741460e-02	ci left: 8.975433e-03	ci right 9.900236e-03	k: 1603	n:170000
KS ci ratio: 8.642295e-03	ci left: 5.451832e-01	ci right 5.499211e-01	k: 93084	n:170000
KIRREL   170000 perm   47 sec   (3585 perm/sec)   p_kst 5.475529e-01   p_cons 9.429412e-03   p_joint 1.180000e-02

Outputting figure to mutsig2_images.part000000000091/KIRREL.2_2334_170000_0.54755_0.0094294_0.0118.png
                gene_name: KIRREL
               theta_stop: 0.097 
                    nperm: 170000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.0094 
      ci_cons_bounds_left: 0.0090 
     ci_cons_bounds_right: 0.0099 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.012 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000091
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 91 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1711>
Subject: Job 9877438: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1711>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000092> was used as the working directory.
Started at Fri Oct  5 22:45:32 2012
Results reported at Fri Oct  5 22:47:19 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000092.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000092.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 92  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000092.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    119.74 sec.
    Max Memory :      1919 MB
    Max Swap   :      4623 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
92
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 92
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 92: processing genes 8252 - 8342
Calculating significance of each gene.
Using projection method.
8252	KITLG	1
8253	KL	1
8254	KLB	1
8255	KLC1	3.303270e-02
8256	KLC2	1.337983e-03
8257	KLC3	1
8258	KLC4	1
8259	KLF1	1
8260	KLF10	4.419324e-02
8261	KLF11	6.091923e-02
8262	KLF12	1
8263	KLF13	1
8264	KLF14	1
8265	KLF15	1
8266	KLF16	1
8267	KLF17	1
8268	KLF3	1
8269	KLF4	1.013426e-01
8270	KLF5	1
8271	KLF6	1
8272	KLF7	1
8273	KLF8	1
8274	KLF9	1
8275	KLHDC1	1
8276	KLHDC10	1
8277	KLHDC2	1
8278	KLHDC3	1
8279	KLHDC4	1
8280	KLHDC5	1
8281	KLHDC7A	1
8282	KLHDC7B	1
8283	KLHDC8A	1
8284	KLHDC8B	1
8285	KLHDC9	1
8286	KLHL1	1
8287	KLHL10	1
8288	KLHL11	1
8289	KLHL12	1
8290	KLHL13	1.968050e-02
8291	KLHL14	1
8292	KLHL15	1
8293	KLHL17	1
8294	KLHL18	1.820295e-01
8295	KLHL2	1.875820e-01
8296	KLHL20	1
8297	KLHL21	9.533180e-02
8298	KLHL22	1
8299	KLHL23	1
8300	KLHL24	1
8301	KLHL25	1
8302	KLHL26	1
8303	KLHL28	1
8304	KLHL3	1
8305	KLHL30	1
8306	KLHL31	1
8307	KLHL32	1
8308	KLHL34	1
8309	KLHL35	1
8310	KLHL36	1
8311	KLHL38	1
8312	KLHL4	7.744218e-02
8313	KLHL5	2.230245e-01
8314	KLHL6	1
8315	KLHL7	1.588198e-01
8316	KLHL8	1
8317	KLHL9	1
8318	KLK1	3.752625e-02
8319	KLK10	1
8320	KLK11	1
8321	KLK12	1
8322	KLK13	1
8323	KLK14	1
8324	KLK15	1
In gene KLK2 the following bins exceed PROBCAP:
    PRAD-G9-6494	categ 6	N = 807     n = 1	mu =   2.35e-07
8325	KLK2	2.261493e-02
8326	KLK3	5.377809e-03
8327	KLK4	1
8328	KLK5	1
8329	KLK6	1
8330	KLK7	1
8331	KLK8	1
8332	KLK9	1
8333	KLKB1	1
8334	KLRAQ1	1
8335	KLRB1	1
8336	KLRC1	1
8337	KLRC2	1
8338	KLRC3	1
8339	KLRC4	1
8340	KLRD1	1
8341	KLRF1	1
8342	KLRG1	1
Done

Running MutSig 2:
Scatter job 92: processing genes 8252 - 8342
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
KLC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.982159e-02	ci left: 2.913250e-01	ci right 3.093915e-01	k: 3003	n:10000
Cons ci ratio: 9.107243e-02	ci left: 1.491353e-01	ci right 1.634655e-01	k: 1562	n:10000
KS ci ratio: 4.916000e-02	ci left: 3.790301e-01	ci right 3.982348e-01	k: 3886	n:10000
KLC2   10000 perm   2 sec   (5505 perm/sec)   p_kst 3.886000e-01   p_cons 1.562000e-01   p_joint 3.003000e-01

Outputting figure to mutsig2_images.part000000000092/KLC2.3_1929_10000_0.3886_0.1562_0.3003.png
                gene_name: KLC2
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 33 percent done.
KLHL13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.435169e-02	ci left: 1.700559e-01	ci right 1.851324e-01	k: 1775	n:10000
KS ci ratio: 4.571844e-02	ci left: 4.138887e-01	ci right 4.333558e-01	k: 4236	n:10000
KLHL13   10000 perm   2 sec   (6257 perm/sec)   p_kst 4.236000e-01   p_cons 1.775000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000092/KLHL13.2_2249_10000_0.4236_0.1775_1.png
                gene_name: KLHL13
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
KLK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.083093e-02	ci left: 7.715474e-01	ci right 7.878893e-01	k: 7798	n:10000
Cons ci ratio: 2.742191e-02	ci left: 6.620951e-01	ci right 6.806050e-01	k: 6714	n:10000
KS ci ratio: 4.204025e-02	ci left: 4.551856e-01	ci right 4.748348e-01	k: 4650	n:10000
KLK3   10000 perm   1 sec   (6969 perm/sec)   p_kst 4.650000e-01   p_cons 6.714000e-01   p_joint 7.798000e-01

Outputting figure to mutsig2_images.part000000000092/KLK3.2_901_10000_0.465_0.6714_0.7798.png
                gene_name: KLK3
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000092
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 92 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1645>
Subject: Job 9877439: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1645>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000093> was used as the working directory.
Started at Fri Oct  5 22:45:32 2012
Results reported at Fri Oct  5 22:47:25 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000093.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000093.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 93  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000093.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    118.22 sec.
    Max Memory :      2043 MB
    Max Swap   :      4650 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
93
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 93
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 93: processing genes 8343 - 8432
Calculating significance of each gene.
Using projection method.
8343	KLRG2	1
8344	KLRK1	1
8345	KMO	1
8346	KNCN	1
8347	KNDC1	3.335567e-01
8348	KNG1	1
8349	KNTC1	1
8350	KPNA1	1
8351	KPNA2	1.660340e-01
8352	KPNA3	1
8353	KPNA4	1
8354	KPNA5	1
8355	KPNA6	1
8356	KPNB1	1
8357	KPRP	6.366512e-02
8358	KPTN	1
8359	KRAS	1
8360	KRBA1	1.541755e-01
8361	KRBA2	1
8362	KRCC1	1
8363	KREMEN1	6.033184e-02
8364	KREMEN2	1
8365	KRI1	1
8366	KRIT1	1
8367	KRR1	1
8368	KRT1	9.657968e-03
8369	KRT10	6.493639e-02
8370	KRT12	1
8371	KRT13	1
8372	KRT14	1
8373	KRT15	8.086662e-02
8374	KRT16	1
8375	KRT17	1
8376	KRT18	5.526887e-02
8377	KRT19	1
8378	KRT2	1
8379	KRT20	1
8380	KRT222	8.545991e-02
8381	KRT23	1
8382	KRT24	1.591192e-01
8383	KRT25	6.400124e-04
8384	KRT26	1
8385	KRT27	1
8386	KRT28	1
8387	KRT3	1
8388	KRT31	1.570909e-01
8389	KRT32	1
8390	KRT33A	1
8391	KRT33B	1
8392	KRT34	1
8393	KRT35	1
8394	KRT36	1
8395	KRT37	1
8396	KRT38	1
8397	KRT39	1
8398	KRT4	2.946053e-02
8399	KRT40	1
8400	KRT5	1
8401	KRT6A	1
8402	KRT6B	1
8403	KRT6C	1.150520e-02
8404	KRT7	1
8405	KRT71	1
8406	KRT72	1
8407	KRT73	6.513629e-02
8408	KRT74	1
8409	KRT75	1
8410	KRT76	1
8411	KRT77	1
8412	KRT78	3.969671e-02
8413	KRT79	1
8414	KRT8	1
8415	KRT80	1
8416	KRT81	1
8417	KRT82	1
8418	KRT83	1.022850e-01
8419	KRT84	1
8420	KRT85	1
8421	KRT86	1
8422	KRT9	1
8423	KRTAP1-1	1
8424	KRTAP1-3	1
8425	KRTAP1-5	1
8426	KRTAP10-1	1
8427	KRTAP10-10	9.299716e-02
8428	KRTAP10-11	1
8429	KRTAP10-12	1
8430	KRTAP10-2	1
8431	KRTAP10-3	6.438545e-02
8432	KRTAP10-4	9.316087e-02
Done

Running MutSig 2:
Scatter job 93: processing genes 8343 - 8432
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
KRT25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.077029e-02	ci left: 7.725604e-01	ci right 7.888758e-01	k: 7808	n:10000
KS ci ratio: 1.374239e-02	ci left: 8.843180e-01	ci right 8.966535e-01	k: 8906	n:10000
KRT25   10000 perm   2 sec   (5128 perm/sec)   p_kst 8.906000e-01   p_cons 7.808000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KRT25.3_1385_10000_0.8906_0.7808_1.png
                gene_name: KRT25
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
KRT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.034147e-02	ci left: 9.299902e-01	ci right 9.397546e-01	k: 9350	n:10000
Cons ci ratio: 4.413521e-02	ci left: 4.311373e-01	ci right 4.506972e-01	k: 4409	n:10000
KS ci ratio: 4.125455e-02	ci left: 4.645717e-01	ci right 4.842432e-01	k: 4744	n:10000
KRT1   10000 perm   2 sec   (5834 perm/sec)   p_kst 4.744000e-01   p_cons 4.409000e-01   p_joint 9.350000e-01

Outputting figure to mutsig2_images.part000000000093/KRT1.2_1971_10000_0.4744_0.4409_0.935.png
                gene_name: KRT1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 50 percent done.
KRT18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.651176e-02	ci left: 2.491493e-01	ci right 2.663920e-01	k: 2577	n:10000
Cons ci ratio: 1.331581e-02	ci left: 8.904663e-01	ci right 9.025016e-01	k: 8966	n:10000
KS ci ratio: 1.573961e-01	ci left: 5.378678e-02	ci right 6.307254e-02	k: 583	n:10000
KRT18   10000 perm   2 sec   (6203 perm/sec)   p_kst 5.830000e-02   p_cons 8.966000e-01   p_joint 2.577000e-01

Joint ci ratio: 4.235581e-02	ci left: 2.934547e-01	ci right 3.062036e-01	k: 5996	n:20000
Cons ci ratio: 9.281886e-03	ci left: 8.949443e-01	ci right 9.033392e-01	k: 17984	n:20000
KS ci ratio: 1.093720e-01	ci left: 5.704007e-02	ci right 6.368846e-02	k: 1206	n:20000
KRT18   20000 perm   4 sec   (5520 perm/sec)   p_kst 6.030000e-02   p_cons 8.992000e-01   p_joint 2.998000e-01

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 7.203421e-03	ci left: 9.047070e-01	ci right 9.112804e-01	k: 27241	n:30000
KS ci ratio: 8.882054e-02	ci left: 5.825244e-02	ci right 6.369963e-02	k: 1828	n:30000
KRT18   30000 perm   6 sec   (5269 perm/sec)   p_kst 6.093333e-02   p_cons 9.080333e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KRT18.2_1321_30000_0.060933_0.90803_1.png
                gene_name: KRT18
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
KRT6C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.408318e-01	ci left: 6.681548e-02	ci right 7.703558e-02	k: 718	n:10000
Cons ci ratio: 8.585446e-02	ci left: 1.650429e-01	ci right 1.799484e-01	k: 1724	n:10000
KS ci ratio: 9.884244e-02	ci left: 1.291424e-01	ci right 1.426705e-01	k: 1358	n:10000
KRT6C   10000 perm   2 sec   (5630 perm/sec)   p_kst 1.358000e-01   p_cons 1.724000e-01   p_joint 7.180000e-02

Joint ci ratio: 1.013818e-01	ci left: 6.601338e-02	ci right 7.311238e-02	k: 1390	n:20000
Cons ci ratio: 6.097632e-02	ci left: 1.660026e-01	ci right 1.764932e-01	k: 3424	n:20000
KS ci ratio: 7.142143e-02	ci left: 1.262051e-01	ci right 1.356025e-01	k: 2617	n:20000
KRT6C   20000 perm   4 sec   (5137 perm/sec)   p_kst 1.308500e-01   p_cons 1.712000e-01   p_joint 6.950000e-02

Joint ci ratio: 3.001538e-02	ci left: 3.569906e-01	ci right 3.679027e-01	k: 10873	n:30000
Cons ci ratio: 5.137913e-02	ci left: 1.583087e-01	ci right 1.666901e-01	k: 4874	n:30000
KS ci ratio: 5.865992e-02	ci left: 1.257529e-01	ci right 1.333856e-01	k: 3886	n:30000
KRT6C   30000 perm   6 sec   (5002 perm/sec)   p_kst 1.295333e-01   p_cons 1.624667e-01   p_joint 3.624333e-01

Outputting figure to mutsig2_images.part000000000093/KRT6C.2_1731_30000_0.12953_0.16247_0.36243.png
                gene_name: KRT6C
               theta_stop: 0.059 
                    nperm: 30000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000093
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 93 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1724>
Subject: Job 9877444: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1724>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000094> was used as the working directory.
Started at Fri Oct  5 22:45:32 2012
Results reported at Fri Oct  5 22:46:41 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000094.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000094.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 94  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000094.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     63.79 sec.
    Max Memory :      2071 MB
    Max Swap   :      4597 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
94
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 94
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 94: processing genes 8433 - 8523
Calculating significance of each gene.
Using projection method.
8433	KRTAP10-5	1
8434	KRTAP10-6	7.895647e-03
8435	KRTAP10-7	1
8436	KRTAP10-8	1
8437	KRTAP10-9	1
8438	KRTAP11-1	1
8439	KRTAP12-1	1
8440	KRTAP12-2	1
8441	KRTAP12-3	1
8442	KRTAP12-4	1
8443	KRTAP13-1	1
8444	KRTAP13-2	1
8445	KRTAP13-3	1
8446	KRTAP13-4	1
8447	KRTAP15-1	1
8448	KRTAP17-1	1
8449	KRTAP19-1	1
8450	KRTAP19-2	1
8451	KRTAP19-3	1
8452	KRTAP19-4	1
8453	KRTAP19-5	3.296456e-02
8454	KRTAP19-6	1
8455	KRTAP19-7	1
8456	KRTAP19-8	1
8457	KRTAP20-1	1
8458	KRTAP20-2	1
8459	KRTAP21-1	1
8460	KRTAP21-2	1
8461	KRTAP22-1	1
8462	KRTAP23-1	1
8463	KRTAP24-1	1
8464	KRTAP26-1	1
8465	KRTAP27-1	1
8466	KRTAP3-1	1
8467	KRTAP3-2	1
8468	KRTAP3-3	7.498745e-03
8469	KRTAP4-1	1
8470	KRTAP4-11	7.846332e-04
8471	KRTAP4-12	1
8472	KRTAP4-2	1
8473	KRTAP4-3	1
8474	KRTAP4-4	1
8475	KRTAP4-5	1
8476	KRTAP4-7	3.158759e-03
8477	KRTAP4-8	3.037043e-02
8478	KRTAP4-9	1
8479	KRTAP5-1	1
8480	KRTAP5-10	1
8481	KRTAP5-11	1
8482	KRTAP5-2	1
8483	KRTAP5-3	1
8484	KRTAP5-4	1
8485	KRTAP5-5	8.307155e-04
8486	KRTAP5-6	1
8487	KRTAP5-7	1
8488	KRTAP5-8	1
8489	KRTAP5-9	1.634981e-02
8490	KRTAP6-1	1
8491	KRTAP6-2	1
8492	KRTAP6-3	1
8493	KRTAP8-1	1
8494	KRTAP9-2	1
8495	KRTAP9-3	1
8496	KRTAP9-4	1
8497	KRTAP9-8	1
8498	KRTAP9-9	1
8499	KRTCAP2	1
8500	KRTCAP3	1
8501	KRTDAP	1.857868e-02
8502	KSR1	2.293647e-01
8503	KSR2	1
8504	KTELC1	1
8505	KTI12	1
8506	KTN1	1
8507	KY	1
8508	KYNU	4.765219e-03
8509	L1CAM	1
8510	L1TD1	9.378878e-02
8511	L2HGDH	1
8512	L3MBTL	1
8513	L3MBTL2	1
8514	L3MBTL3	1
8515	L3MBTL4	1
8516	LACE1	1
8517	LACRT	1
8518	LACTB	2.184227e-02
8519	LACTB2	1
8520	LAD1	1
8521	LAG3	1
8522	LAGE3	1
8523	LAIR1	1
Done

Running MutSig 2:
Scatter job 94: processing genes 8433 - 8523
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
KRTAP4-11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.119669e-02	ci left: 4.652708e-01	ci right 4.849437e-01	k: 4751	n:10000
Cons ci ratio: 1.655961e-02	ci left: 8.414233e-01	ci right 8.555730e-01	k: 8486	n:10000
KS ci ratio: 1.140784e-01	ci left: 9.954457e-02	ci right 1.116863e-01	k: 1055	n:10000
KRTAP4-11   10000 perm   1 sec   (7281 perm/sec)   p_kst 1.055000e-01   p_cons 8.486000e-01   p_joint 4.751000e-01

Joint ci ratio: 5.024137e-02	ci left: 2.274527e-01	ci right 2.392250e-01	k: 4666	n:20000
Cons ci ratio: 1.172464e-02	ci left: 8.432021e-01	ci right 8.531964e-01	k: 16965	n:20000
KS ci ratio: 8.159898e-02	ci left: 9.921306e-02	ci right 1.077026e-01	k: 2068	n:20000
KRTAP4-11   20000 perm   5 sec   (4165 perm/sec)   p_kst 1.034000e-01   p_cons 8.482500e-01   p_joint 2.333000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP4-11.3_592_20000_0.1034_0.84825_0.2333.png
                gene_name: KRTAP4-11
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 25 percent done.
KRTAP10-6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.076659e-03	ci left: 9.960741e-01	ci right 9.982200e-01	k: 9973	n:10000
KS ci ratio: 3.548895e-02	ci left: 5.396851e-01	ci right 5.592861e-01	k: 5495	n:10000
KRTAP10-6   10000 perm   1 sec   (7671 perm/sec)   p_kst 5.495000e-01   p_cons 9.973000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000094/KRTAP10-6.2_1102_10000_0.5495_0.9973_1.png
                gene_name: KRTAP10-6
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
KRTAP5-5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.199211e-02	ci left: 7.521113e-01	ci right 7.689367e-01	k: 7606	n:10000
Cons ci ratio: 2.676571e-02	ci left: 6.727704e-01	ci right 6.911235e-01	k: 6820	n:10000
KS ci ratio: 4.805083e-02	ci left: 3.898806e-01	ci right 4.091780e-01	k: 3995	n:10000
KRTAP5-5   10000 perm   1 sec   (7823 perm/sec)   p_kst 3.995000e-01   p_cons 6.820000e-01   p_joint 7.606000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP5-5.2_718_10000_0.3995_0.682_0.7606.png
                gene_name: KRTAP5-5
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 75 percent done.
KYNU
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.604552e-02	ci left: 3.191965e-01	ci right 3.377036e-01	k: 3284	n:10000
KS ci ratio: 2.645157e-02	ci left: 6.779086e-01	ci right 6.961823e-01	k: 6871	n:10000
KYNU   10000 perm   1 sec   (7326 perm/sec)   p_kst 6.871000e-01   p_cons 3.284000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000094/KYNU.2_1476_10000_0.6871_0.3284_1.png
                gene_name: KYNU
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000094
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 94 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1727>
Subject: Job 9877449: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1727>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000095> was used as the working directory.
Started at Fri Oct  5 22:45:32 2012
Results reported at Fri Oct  5 22:46:46 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000095.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000095.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 95  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000095.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     68.83 sec.
    Max Memory :      2082 MB
    Max Swap   :      4690 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
95
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 95
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 95: processing genes 8524 - 8614
Calculating significance of each gene.
Using projection method.
8524	LAIR2	1
8525	LALBA	1
8526	LAMA1	6.550732e-01
8527	LAMA2	1
8528	LAMA3	6.543399e-01
8529	LAMA4	8.524770e-02
8530	LAMA5	1
8531	LAMB1	3.276571e-01
8532	LAMB2	1
8533	LAMB3	1
8534	LAMB4	3.412493e-01
8535	LAMC1	7.333009e-02
8536	LAMC2	1
8537	LAMC3	1
8538	LAMP1	1
8539	LAMP2	1
8540	LAMP3	1
8541	LANCL1	1
8542	LANCL2	1
8543	LANCL3	1
8544	LAP3	1
8545	LAPTM4A	1
8546	LAPTM4B	1
8547	LAPTM5	1
8548	LARGE	1
8549	LARP1	4.816899e-02
8550	LARP1B	1
8551	LARP4	6.395092e-02
8552	LARP4B	1
8553	LARP6	1
8554	LARP7	1
8555	LARS	1
8556	LARS2	1
8557	LAS1L	1
8558	LASP1	1
8559	LASS1	1
8560	LASS2	1
8561	LASS3	7.507006e-02
8562	LASS4	1
8563	LASS5	1
8564	LASS6	4.525940e-02
8565	LAT	1
8566	LAT2	4.826204e-02
8567	LATS1	1
8568	LATS2	1
8569	LAX1	1
8570	LAYN	1
8571	LBH	1
8572	LBP	1
8573	LBR	1.115360e-01
8574	LBX1	1
8575	LBX2	1
8576	LBXCOR1	1
8577	LCA5	1
8578	LCA5L	1
8579	LCAT	1
8580	LCE1A	1.176014e-02
8581	LCE1B	1
8582	LCE1C	1.221210e-02
8583	LCE1D	1
8584	LCE1E	1
8585	LCE1F	2.589909e-02
8586	LCE2A	1
8587	LCE2B	1
8588	LCE2C	1
8589	LCE2D	4.870333e-04
8590	LCE3A	1
8591	LCE3B	1
8592	LCE3C	1
8593	LCE3D	1
8594	LCE3E	1
8595	LCE4A	1
8596	LCE5A	3.412582e-02
8597	LCK	1
8598	LCLAT1	1
8599	LCMT1	1
8600	LCMT2	1
8601	LCN1	1
8602	LCN10	1
8603	LCN12	1
8604	LCN15	1
8605	LCN2	1.467517e-03
8606	LCN6	1
8607	LCN8	1
8608	LCN9	1
8609	LCNL1	1
8610	LCOR	1
8611	LCORL	1
8612	LCP1	1
8613	LCP2	1
8614	LCT	1
Done

Running MutSig 2:
Scatter job 95: processing genes 8524 - 8614
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
LAMA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.249880e-02	ci left: 5.828939e-01	ci right 6.022522e-01	k: 5926	n:10000
Cons ci ratio: 4.950306e-02	ci left: 3.757461e-01	ci right 3.949208e-01	k: 3853	n:10000
KS ci ratio: 2.296359e-02	ci left: 7.358313e-01	ci right 7.530260e-01	k: 7445	n:10000
LAMA4   10000 perm   2 sec   (5356 perm/sec)   p_kst 7.445000e-01   p_cons 3.853000e-01   p_joint 5.926000e-01

Outputting figure to mutsig2_images.part000000000095/LAMA4.2_5792_10000_0.7445_0.3853_0.5926.png
                gene_name: LAMA4
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 20 percent done.
LAMC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.512284e-03	ci left: 9.778092e-01	ci right 9.833058e-01	k: 9807	n:10000
KS ci ratio: 1.052715e-02	ci left: 9.277156e-01	ci right 9.376305e-01	k: 9328	n:10000
LAMC1   10000 perm   2 sec   (5742 perm/sec)   p_kst 9.328000e-01   p_cons 9.807000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000095/LAMC1.2_4942_10000_0.9328_0.9807_1.png
                gene_name: LAMC1
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
LARP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.425987e-02	ci left: 2.624051e-01	ci right 2.799284e-01	k: 2711	n:10000
KS ci ratio: 2.813322e-02	ci left: 6.506199e-01	ci right 6.692868e-01	k: 6600	n:10000
LARP1   10000 perm   2 sec   (6524 perm/sec)   p_kst 6.600000e-01   p_cons 2.711000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000095/LARP1.2_3136_10000_0.66_0.2711_1.png
                gene_name: LARP1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
LCE2D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.300599e-02	ci left: 5.753695e-01	ci right 5.947809e-01	k: 5851	n:10000
Cons ci ratio: 3.531729e-02	ci left: 5.420892e-01	ci right 5.616806e-01	k: 5519	n:10000
KS ci ratio: 3.530301e-02	ci left: 5.422895e-01	ci right 5.618801e-01	k: 5521	n:10000
LCE2D   10000 perm   1 sec   (7985 perm/sec)   p_kst 5.521000e-01   p_cons 5.519000e-01   p_joint 5.851000e-01

Outputting figure to mutsig2_images.part000000000095/LCE2D.2_337_10000_0.5521_0.5519_0.5851.png
                gene_name: LCE2D
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.59 

Current progress: 80 percent done.
LCN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.278129e-02	ci left: 3.460122e-01	ci right 3.648721e-01	k: 3554	n:10000
Cons ci ratio: 5.922919e-02	ci left: 2.954883e-01	ci right 3.136257e-01	k: 3045	n:10000
KS ci ratio: 2.309032e-02	ci left: 7.337090e-01	ci right 7.509496e-01	k: 7424	n:10000
LCN2   10000 perm   1 sec   (7975 perm/sec)   p_kst 7.424000e-01   p_cons 3.045000e-01   p_joint 3.554000e-01

Outputting figure to mutsig2_images.part000000000095/LCN2.2_621_10000_0.7424_0.3045_0.3554.png
                gene_name: LCN2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000095
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 95 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1553>
Subject: Job 9877460: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1553>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000096> was used as the working directory.
Started at Fri Oct  5 22:45:38 2012
Results reported at Fri Oct  5 23:26:51 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000096.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000096.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 96  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000096.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2713.74 sec.
    Max Memory :      1968 MB
    Max Swap   :      4659 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
96
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 96
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 96: processing genes 8615 - 8704
Calculating significance of each gene.
Using projection method.
8615	LCTL	1.723444e-02
8616	LDB1	1
8617	LDB2	1
8618	LDB3	1
8619	LDHA	1
8620	LDHAL6A	1
8621	LDHAL6B	1
8622	LDHB	1
8623	LDHC	1
8624	LDHD	1
8625	LDLR	2.063123e-01
8626	LDLRAD1	1
8627	LDLRAD2	1
8628	LDLRAD3	1
8629	LDLRAP1	1
8630	LDOC1	1
8631	LDOC1L	1.035359e-02
8632	LEAP2	1
8633	LECT1	1
8634	LECT2	5.141790e-03
8635	LEF1	1.040759e-01
8636	LEFTY1	1
8637	LEFTY2	1
8638	LEKR1	1
8639	LELP1	7.138362e-03
8640	LEMD1	1
8641	LEMD2	1
8642	LEMD3	1
8643	LENEP	1
8644	LENG1	1
8645	LENG8	1
8646	LENG9	1
8647	LEO1	1
8648	LEP	1
8649	LEPR	1
8650	LEPRE1	1
8651	LEPREL1	1
8652	LEPREL2	1
8653	LEPROT	1
8654	LEPROTL1	1
8655	LETM1	1
8656	LETM2	1
8657	LETMD1	1
8658	LFNG	1
8659	LGALS1	1
8660	LGALS12	1
8661	LGALS13	1
8662	LGALS14	1
8663	LGALS2	1
8664	LGALS3	1
8665	LGALS3BP	1
8666	LGALS4	1
8667	LGALS7B	1
8668	LGALS8	1
8669	LGALS9	1
8670	LGALS9B	1
8671	LGALS9C	1
8672	LGI1	1
8673	LGI2	1
8674	LGI3	1
8675	LGI4	1
8676	LGMN	1
8677	LGR4	1
8678	LGR5	5.985623e-02
8679	LGR6	1
8680	LGSN	1.014449e-01
8681	LGTN	5.000189e-02
8682	LHB	1
In gene LHCGR the following bins exceed PROBCAP:
    PRAD-CH-5792	categ 6	N = 1979    n = 1	mu =   2.67e-07
8683	LHCGR	6.918093e-02
8684	LHFP	3.854213e-02
8685	LHFPL1	1
8686	LHFPL2	1
8687	LHFPL3	1
8688	LHFPL4	1
8689	LHFPL5	1
8690	LHPP	1
8691	LHX1	1
8692	LHX2	1
8693	LHX3	3.175066e-03
8694	LHX4	1
8695	LHX5	1.164538e-01
8696	LHX6	1
8697	LHX8	1
8698	LHX9	1
8699	LIAS	1
8700	LIF	1
8701	LIFR	1
8702	LIG1	1.529641e-01
8703	LIG3	1
8704	LIG4	1
Done

Running MutSig 2:
Scatter job 96: processing genes 8615 - 8704
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
LCTL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.029257e-01	ci left: 2.024975e-03	ci right 4.279939e-03	k: 30	n:10000
Cons ci ratio: 8.872880e-02	ci left: 1.560058e-01	ci right 1.705909e-01	k: 1632	n:10000
KS ci ratio: 1.238931e+00	ci left: 4.116173e-04	ci right 1.707790e-03	k: 9	n:10000
LCTL   10000 perm   2 sec   (6213 perm/sec)   p_kst 9.000000e-04   p_cons 1.632000e-01   p_joint 3.000000e-03

Joint ci ratio: 6.438316e-01	ci left: 1.261006e-03	ci right 2.491096e-03	k: 36	n:20000
Cons ci ratio: 6.175015e-02	ci left: 1.624965e-01	ci right 1.729003e-01	k: 3353	n:20000
KS ci ratio: 9.795835e-01	ci left: 4.198281e-04	ci right 1.236710e-03	k: 15	n:20000
LCTL   20000 perm   7 sec   (2780 perm/sec)   p_kst 7.500000e-04   p_cons 1.676500e-01   p_joint 1.800000e-03

Joint ci ratio: 1.086959e+00	ci left: 2.067024e-04	ci right 6.986151e-04	k: 12	n:30000
Cons ci ratio: 5.021530e-02	ci left: 1.645769e-01	ci right 1.730873e-01	k: 5064	n:30000
KS ci ratio: 7.684293e-01	ci left: 5.393597e-04	ci right 1.229920e-03	k: 25	n:30000
LCTL   30000 perm   9 sec   (3231 perm/sec)   p_kst 8.333333e-04   p_cons 1.688000e-01   p_joint 4.000000e-04

Joint ci ratio: 9.797917e-01	ci left: 2.098994e-04	ci right 6.184302e-04	k: 15	n:40000
Cons ci ratio: 4.375443e-02	ci left: 1.634558e-01	ci right 1.707926e-01	k: 6684	n:40000
KS ci ratio: 7.154134e-01	ci left: 4.855960e-04	ci right 1.041056e-03	k: 29	n:40000
LCTL   40000 perm   11 sec   (3487 perm/sec)   p_kst 7.250000e-04   p_cons 1.671000e-01   p_joint 3.750000e-04

Joint ci ratio: 1.047507e+00	ci left: 1.384461e-04	ci right 4.445669e-04	k: 13	n:50000
Cons ci ratio: 3.902941e-02	ci left: 1.645934e-01	ci right 1.711652e-01	k: 8393	n:50000
KS ci ratio: 6.623624e-01	ci left: 4.709643e-04	ci right 9.501034e-04	k: 34	n:50000
LCTL   50000 perm   14 sec   (3644 perm/sec)   p_kst 6.800000e-04   p_cons 1.678600e-01   p_joint 2.600000e-04

Joint ci ratio: 6.624021e-01	ci left: 3.924641e-04	ci right 7.917707e-04	k: 34	n:60000
Cons ci ratio: 3.561992e-02	ci left: 1.649501e-01	ci right 1.709487e-01	k: 10076	n:60000
KS ci ratio: 6.119868e-01	ci left: 4.763178e-04	ci right 9.077013e-04	k: 40	n:60000
LCTL   60000 perm   16 sec   (3729 perm/sec)   p_kst 6.666667e-04   p_cons 1.679333e-01   p_joint 5.666667e-04

Joint ci ratio: 8.764072e-01	ci left: 1.634254e-04	ci right 4.238370e-04	k: 19	n:70000
Cons ci ratio: 3.296840e-02	ci left: 1.652513e-01	ci right 1.708049e-01	k: 11761	n:70000
KS ci ratio: 5.841671e-01	ci left: 4.567570e-04	ci right 8.437370e-04	k: 44	n:70000
LCTL   70000 perm   19 sec   (3771 perm/sec)   p_kst 6.285714e-04   p_cons 1.680143e-01   p_joint 2.714286e-04

Joint ci ratio: 4.494384e-01	ci left: 7.374724e-04	ci right 1.175025e-03	k: 75	n:80000
Cons ci ratio: 3.093361e-02	ci left: 1.645828e-01	ci right 1.697664e-01	k: 13373	n:80000
KS ci ratio: 5.487314e-01	ci left: 4.639215e-04	ci right 8.239026e-04	k: 50	n:80000
LCTL   80000 perm   21 sec   (3792 perm/sec)   p_kst 6.250000e-04   p_cons 1.671625e-01   p_joint 9.375000e-04

Joint ci ratio: 3.701726e-01	ci left: 1.014698e-03	ci right 1.485064e-03	k: 111	n:90000
Cons ci ratio: 2.920734e-02	ci left: 1.643255e-01	ci right 1.692071e-01	k: 15008	n:90000
KS ci ratio: 5.101704e-01	ci left: 4.893889e-04	ci right 8.330153e-04	k: 58	n:90000
LCTL   90000 perm   24 sec   (3799 perm/sec)   p_kst 6.444444e-04   p_cons 1.667556e-01   p_joint 1.233333e-03

Joint ci ratio: 3.346770e-01	ci left: 1.141164e-03	ci right 1.608528e-03	k: 136	n:100000
Cons ci ratio: 2.767932e-02	ci left: 1.647427e-01	ci right 1.693766e-01	k: 16705	n:100000
KS ci ratio: 4.717474e-01	ci left: 5.280841e-04	ci right 8.619835e-04	k: 68	n:100000
LCTL   100000 perm   26 sec   (3789 perm/sec)   p_kst 6.800000e-04   p_cons 1.670500e-01   p_joint 1.360000e-03

Joint ci ratio: 3.685715e-01	ci left: 8.384393e-04	ci right 1.225011e-03	k: 112	n:110000
Cons ci ratio: 2.637363e-02	ci left: 1.650353e-01	ci right 1.694550e-01	k: 18396	n:110000
KS ci ratio: 4.524862e-01	ci left: 5.282714e-04	ci right 8.444749e-04	k: 74	n:110000
LCTL   110000 perm   29 sec   (3767 perm/sec)   p_kst 6.727273e-04   p_cons 1.672364e-01   p_joint 1.018182e-03

Joint ci ratio: 3.490365e-01	ci left: 8.671463e-04	ci right 1.240975e-03	k: 125	n:120000
Cons ci ratio: 2.522854e-02	ci left: 1.653745e-01	ci right 1.696082e-01	k: 20098	n:120000
KS ci ratio: 4.327419e-01	ci left: 5.360824e-04	ci right 8.388946e-04	k: 81	n:120000
LCTL   120000 perm   32 sec   (3739 perm/sec)   p_kst 6.750000e-04   p_cons 1.674833e-01   p_joint 1.041667e-03

Joint ci ratio: 3.637990e-01	ci left: 7.303943e-04	ci right 1.061753e-03	k: 115	n:130000
Cons ci ratio: 2.424610e-02	ci left: 1.653742e-01	ci right 1.694407e-01	k: 21762	n:130000
KS ci ratio: 4.107822e-01	ci left: 5.567328e-04	ci right 8.508962e-04	k: 90	n:130000
LCTL   130000 perm   35 sec   (3708 perm/sec)   p_kst 6.923077e-04   p_cons 1.674000e-01   p_joint 8.846154e-04

Joint ci ratio: 2.864663e-01	ci left: 1.144594e-03	ci right 1.533673e-03	k: 186	n:140000
Cons ci ratio: 2.331818e-02	ci left: 1.659952e-01	ci right 1.699186e-01	k: 23513	n:140000
KS ci ratio: 3.938341e-01	ci left: 5.683292e-04	ci right 8.530105e-04	k: 98	n:140000
LCTL   140000 perm   38 sec   (3673 perm/sec)   p_kst 7.000000e-04   p_cons 1.679500e-01   p_joint 1.328571e-03

Joint ci ratio: 3.167505e-01	ci left: 8.587074e-04	ci right 1.187738e-03	k: 152	n:150000
Cons ci ratio: 2.248706e-02	ci left: 1.665624e-01	ci right 1.703571e-01	k: 25268	n:150000
KS ci ratio: 3.861152e-01	ci left: 5.544917e-04	ci right 8.254136e-04	k: 102	n:150000
LCTL   150000 perm   41 sec   (3633 perm/sec)   p_kst 6.800000e-04   p_cons 1.684533e-01   p_joint 1.013333e-03

Joint ci ratio: 1.540379e-01	ci left: 3.720653e-03	ci right 4.347529e-03	k: 644	n:160000
Cons ci ratio: 2.215902e-02	ci left: 1.617780e-01	ci right 1.654092e-01	k: 26174	n:160000
KS ci ratio: 3.736277e-01	ci left: 5.594095e-04	ci right 8.217325e-04	k: 109	n:160000
LCTL   160000 perm   45 sec   (3595 perm/sec)   p_kst 6.812500e-04   p_cons 1.635875e-01   p_joint 4.025000e-03

Joint ci ratio: 1.496926e-01	ci left: 3.716826e-03	ci right 4.323810e-03	k: 682	n:170000
Cons ci ratio: 2.147615e-02	ci left: 1.621021e-01	ci right 1.656270e-01	k: 27856	n:170000
KS ci ratio: 3.638376e-01	ci left: 5.585272e-04	ci right 8.119455e-04	k: 115	n:170000
LCTL   170000 perm   48 sec   (3556 perm/sec)   p_kst 6.764706e-04   p_cons 1.638588e-01   p_joint 4.011765e-03

Joint ci ratio: 2.268908e-01	ci left: 1.467794e-03	ci right 1.848545e-03	k: 297	n:180000
Cons ci ratio: 2.087684e-02	ci left: 1.620763e-01	ci right 1.655012e-01	k: 29481	n:180000
KS ci ratio: 3.562429e-01	ci left: 5.527629e-04	ci right 7.971179e-04	k: 120	n:180000
LCTL   180000 perm   51 sec   (3517 perm/sec)   p_kst 6.666667e-04   p_cons 1.637833e-01   p_joint 1.650000e-03

Joint ci ratio: 2.189495e-01	ci left: 1.499870e-03	ci right 1.873492e-03	k: 319	n:190000
Cons ci ratio: 1.995832e-02	ci left: 1.670815e-01	ci right 1.704550e-01	k: 32065	n:190000
KS ci ratio: 3.491046e-01	ci left: 5.476545e-04	ci right 7.838025e-04	k: 125	n:190000
LCTL   190000 perm   55 sec   (3476 perm/sec)   p_kst 6.578947e-04   p_cons 1.687632e-01   p_joint 1.678947e-03

Joint ci ratio: 2.912387e-01	ci left: 7.733666e-04	ci right 1.041439e-03	k: 180	n:200000
Cons ci ratio: 1.943762e-02	ci left: 1.673450e-01	ci right 1.706346e-01	k: 33797	n:200000
KS ci ratio: 3.360221e-01	ci left: 5.659730e-04	ci right 7.988947e-04	k: 135	n:200000
LCTL   200000 perm   58 sec   (3433 perm/sec)   p_kst 6.750000e-04   p_cons 1.689850e-01   p_joint 9.000000e-04

Joint ci ratio: 2.850090e-01	ci left: 7.718822e-04	ci right 1.032688e-03	k: 188	n:210000
Cons ci ratio: 1.896111e-02	ci left: 1.675037e-01	ci right 1.707149e-01	k: 35512	n:210000
KS ci ratio: 3.300119e-01	ci left: 5.608406e-04	ci right 7.866456e-04	k: 140	n:210000
LCTL   210000 perm   62 sec   (3391 perm/sec)   p_kst 6.666667e-04   p_cons 1.691048e-01   p_joint 8.952381e-04

Joint ci ratio: 2.763685e-01	ci left: 7.875047e-04	ci right 1.044120e-03	k: 200	n:220000
Cons ci ratio: 1.851351e-02	ci left: 1.677169e-01	ci right 1.708554e-01	k: 37242	n:220000
KS ci ratio: 3.199568e-01	ci left: 5.729211e-04	ci right 7.951224e-04	k: 149	n:220000
LCTL   220000 perm   66 sec   (3349 perm/sec)   p_kst 6.772727e-04   p_cons 1.692818e-01   p_joint 9.090909e-04

Joint ci ratio: 2.665964e-01	ci left: 8.140467e-04	ci right 1.068366e-03	k: 215	n:230000
Cons ci ratio: 1.810654e-02	ci left: 1.677521e-01	ci right 1.708215e-01	k: 38935	n:230000
KS ci ratio: 3.069286e-01	ci left: 6.000907e-04	ci right 8.215015e-04	k: 162	n:230000
LCTL   230000 perm   70 sec   (3307 perm/sec)   p_kst 7.043478e-04   p_cons 1.692826e-01   p_joint 9.347826e-04

Joint ci ratio: 2.577924e-01	ci left: 8.385229e-04	ci right 1.090446e-03	k: 230	n:240000
Cons ci ratio: 1.769722e-02	ci left: 1.682292e-01	ci right 1.712371e-01	k: 40735	n:240000
KS ci ratio: 2.979240e-01	ci left: 6.135936e-04	ci right 8.320895e-04	k: 172	n:240000
LCTL   240000 perm   73 sec   (3266 perm/sec)   p_kst 7.166667e-04   p_cons 1.697292e-01   p_joint 9.583333e-04

Joint ci ratio: 2.594894e-01	ci left: 7.937575e-04	ci right 1.034056e-03	k: 227	n:250000
Cons ci ratio: 1.734886e-02	ci left: 1.681108e-01	ci right 1.710568e-01	k: 42395	n:250000
KS ci ratio: 2.937112e-01	ci left: 6.075655e-04	ci right 8.202862e-04	k: 177	n:250000
LCTL   250000 perm   78 sec   (3224 perm/sec)   p_kst 7.080000e-04   p_cons 1.695800e-01   p_joint 9.080000e-04

Joint ci ratio: 2.647770e-01	ci left: 7.308839e-04	ci right 9.574048e-04	k: 218	n:260000
Cons ci ratio: 1.700728e-02	ci left: 1.682168e-01	ci right 1.711060e-01	k: 44111	n:260000
KS ci ratio: 2.857915e-01	ci left: 6.198652e-04	ci right 8.299845e-04	k: 187	n:260000
LCTL   260000 perm   82 sec   (3184 perm/sec)   p_kst 7.192308e-04   p_cons 1.696577e-01   p_joint 8.384615e-04

Joint ci ratio: 2.623937e-01	ci left: 7.176494e-04	ci right 9.377378e-04	k: 222	n:270000
Cons ci ratio: 1.669783e-02	ci left: 1.681013e-01	ci right 1.709355e-01	k: 45769	n:270000
KS ci ratio: 2.828005e-01	ci left: 6.106654e-04	ci right 8.151133e-04	k: 191	n:270000
LCTL   270000 perm   86 sec   (3146 perm/sec)   p_kst 7.074074e-04   p_cons 1.695148e-01   p_joint 8.222222e-04

Joint ci ratio: 2.473168e-01	ci left: 7.856407e-04	ci right 1.010611e-03	k: 250	n:280000
Cons ci ratio: 1.640552e-02	ci left: 1.679802e-01	ci right 1.707623e-01	k: 47423	n:280000
KS ci ratio: 2.770864e-01	ci left: 6.154221e-04	ci right 8.165737e-04	k: 199	n:280000
LCTL   280000 perm   90 sec   (3108 perm/sec)   p_kst 7.107143e-04   p_cons 1.693679e-01   p_joint 8.928571e-04

Joint ci ratio: 1.734275e-01	ci left: 1.606103e-03	ci right 1.914336e-03	k: 509	n:290000
Cons ci ratio: 1.612072e-02	ci left: 1.679951e-01	ci right 1.707287e-01	k: 49114	n:290000
KS ci ratio: 2.704073e-01	ci left: 6.263176e-04	ci right 8.252587e-04	k: 209	n:290000
LCTL   290000 perm   94 sec   (3069 perm/sec)   p_kst 7.206897e-04   p_cons 1.693586e-01   p_joint 1.755172e-03

Joint ci ratio: 1.710961e-01	ci left: 1.597220e-03	ci right 1.899202e-03	k: 523	n:300000
Cons ci ratio: 1.586266e-02	ci left: 1.677901e-01	ci right 1.704763e-01	k: 50739	n:300000
KS ci ratio: 2.678696e-01	ci left: 6.178737e-04	ci right 8.119815e-04	k: 213	n:300000
LCTL   300000 perm   99 sec   (3031 perm/sec)   p_kst 7.100000e-04   p_cons 1.691300e-01   p_joint 1.743333e-03

Joint ci ratio: 1.683866e-01	ci left: 1.598206e-03	ci right 1.895104e-03	k: 540	n:310000
Cons ci ratio: 1.560442e-02	ci left: 1.678173e-01	ci right 1.704598e-01	k: 52432	n:310000
KS ci ratio: 2.629985e-01	ci left: 6.220319e-04	ci right 8.133079e-04	k: 221	n:310000
LCTL   310000 perm   104 sec   (2995 perm/sec)   p_kst 7.129032e-04   p_cons 1.691355e-01   p_joint 1.741935e-03

Joint ci ratio: 1.662501e-01	ci left: 1.590179e-03	ci right 1.881463e-03	k: 554	n:320000
Cons ci ratio: 1.535788e-02	ci left: 1.678526e-01	ci right 1.704534e-01	k: 54128	n:320000
KS ci ratio: 2.589478e-01	ci left: 6.230376e-04	ci right 8.111948e-04	k: 228	n:320000
LCTL   320000 perm   108 sec   (2958 perm/sec)   p_kst 7.125000e-04   p_cons 1.691500e-01   p_joint 1.731250e-03

Joint ci ratio: 1.791665e-01	ci left: 1.318714e-03	ci right 1.581075e-03	k: 477	n:330000
Cons ci ratio: 1.512804e-02	ci left: 1.677862e-01	ci right 1.703468e-01	k: 55791	n:330000
KS ci ratio: 2.540038e-01	ci left: 6.296777e-04	ci right 8.156347e-04	k: 237	n:330000
LCTL   330000 perm   113 sec   (2922 perm/sec)   p_kst 7.181818e-04   p_cons 1.690636e-01   p_joint 1.445455e-03

Joint ci ratio: 1.762407e-01	ci left: 1.324894e-03	ci right 1.583722e-03	k: 493	n:340000
Cons ci ratio: 1.489809e-02	ci left: 1.679147e-01	ci right 1.704380e-01	k: 57519	n:340000
KS ci ratio: 2.493326e-01	ci left: 6.359593e-04	ci right 8.197817e-04	k: 246	n:340000
LCTL   340000 perm   118 sec   (2887 perm/sec)   p_kst 7.235294e-04   p_cons 1.691735e-01   p_joint 1.450000e-03

Joint ci ratio: 1.734538e-01	ci left: 1.330754e-03	ci right 1.586186e-03	k: 509	n:350000
Cons ci ratio: 1.468801e-02	ci left: 1.678509e-01	ci right 1.703374e-01	k: 59182	n:350000
KS ci ratio: 2.453901e-01	ci left: 6.392295e-04	ci right 8.206303e-04	k: 254	n:350000
LCTL   350000 perm   123 sec   (2853 perm/sec)   p_kst 7.257143e-04   p_cons 1.690914e-01   p_joint 1.454286e-03

Joint ci ratio: 1.565382e-01	ci left: 1.602757e-03	ci right 1.877585e-03	k: 625	n:360000
Cons ci ratio: 1.447742e-02	ci left: 1.679682e-01	ci right 1.704204e-01	k: 60909	n:360000
KS ci ratio: 2.425536e-01	ci left: 6.371209e-04	ci right 8.155187e-04	k: 260	n:360000
LCTL   360000 perm   128 sec   (2820 perm/sec)   p_kst 7.222222e-04   p_cons 1.691917e-01   p_joint 1.736111e-03

Joint ci ratio: 1.550602e-01	ci left: 1.590607e-03	ci right 1.860536e-03	k: 637	n:370000
Cons ci ratio: 1.427961e-02	ci left: 1.680012e-01	ci right 1.704202e-01	k: 62607	n:370000
KS ci ratio: 2.407171e-01	ci left: 6.300574e-04	ci right 8.049422e-04	k: 264	n:370000
LCTL   370000 perm   133 sec   (2788 perm/sec)   p_kst 7.135135e-04   p_cons 1.692081e-01   p_joint 1.721622e-03

Joint ci ratio: 1.531520e-01	ci left: 1.589230e-03	ci right 1.855303e-03	k: 653	n:380000
Cons ci ratio: 1.409985e-02	ci left: 1.678307e-01	ci right 1.702165e-01	k: 64228	n:380000
KS ci ratio: 2.384785e-01	ci left: 6.258448e-04	ci right 7.977061e-04	k: 269	n:380000
LCTL   380000 perm   138 sec   (2757 perm/sec)   p_kst 7.078947e-04   p_cons 1.690211e-01   p_joint 1.718421e-03

Joint ci ratio: 1.506383e-01	ci left: 1.602748e-03	ci right 1.866282e-03	k: 675	n:390000
Cons ci ratio: 1.391781e-02	ci left: 1.678481e-01	ci right 1.702030e-01	k: 65919	n:390000
KS ci ratio: 2.358725e-01	ci left: 6.242679e-04	ci right 7.935493e-04	k: 275	n:390000
LCTL   390000 perm   143 sec   (2725 perm/sec)   p_kst 7.051282e-04   p_cons 1.690231e-01   p_joint 1.730769e-03

Joint ci ratio: 2.053701e-01	ci left: 8.165703e-04	ci right 1.005780e-03	k: 363	n:400000
Cons ci ratio: 1.373959e-02	ci left: 1.679271e-01	ci right 1.702527e-01	k: 67635	n:400000
KS ci ratio: 2.333500e-01	ci left: 6.227795e-04	ci right 7.895908e-04	k: 281	n:400000
LCTL   400000 perm   149 sec   (2694 perm/sec)   p_kst 7.025000e-04   p_cons 1.690875e-01   p_joint 9.075000e-04

Joint ci ratio: 2.031501e-01	ci left: 8.151681e-04	ci right 1.001757e-03	k: 371	n:410000
Cons ci ratio: 1.358077e-02	ci left: 1.677397e-01	ci right 1.700357e-01	k: 69243	n:410000
KS ci ratio: 2.309068e-01	ci left: 6.213729e-04	ci right 7.858162e-04	k: 287	n:410000
LCTL   410000 perm   154 sec   (2663 perm/sec)   p_kst 7.000000e-04   p_cons 1.688854e-01   p_joint 9.048780e-04

Joint ci ratio: 1.994308e-01	ci left: 8.274133e-04	ci right 1.012916e-03	k: 385	n:420000
Cons ci ratio: 1.341345e-02	ci left: 1.678511e-01	ci right 1.701201e-01	k: 70973	n:420000
KS ci ratio: 2.266185e-01	ci left: 6.312684e-04	ci right 7.947945e-04	k: 298	n:420000
LCTL   420000 perm   159 sec   (2634 perm/sec)   p_kst 7.095238e-04   p_cons 1.689833e-01   p_joint 9.166667e-04

Joint ci ratio: 1.964007e-01	ci left: 8.346956e-04	ci right 1.018648e-03	k: 397	n:430000
Cons ci ratio: 1.326083e-02	ci left: 1.677743e-01	ci right 1.700162e-01	k: 72624	n:430000
KS ci ratio: 2.229206e-01	ci left: 6.385345e-04	ci right 8.008735e-04	k: 308	n:430000
LCTL   430000 perm   165 sec   (2606 perm/sec)   p_kst 7.162791e-04   p_cons 1.688930e-01   p_joint 9.232558e-04

Joint ci ratio: 1.996940e-01	ci left: 7.876428e-04	ci right 9.644909e-04	k: 384	n:440000
Cons ci ratio: 1.311255e-02	ci left: 1.677169e-01	ci right 1.699329e-01	k: 74282	n:440000
KS ci ratio: 2.214924e-01	ci left: 6.326071e-04	ci right 7.922682e-04	k: 312	n:440000
LCTL   440000 perm   171 sec   (2577 perm/sec)   p_kst 7.090909e-04   p_cons 1.688227e-01   p_joint 8.727273e-04

Joint ci ratio: 1.846979e-01	ci left: 9.076493e-04	ci right 1.094427e-03	k: 449	n:450000
Cons ci ratio: 1.296381e-02	ci left: 1.677775e-01	ci right 1.699689e-01	k: 75992	n:450000
KS ci ratio: 2.187148e-01	ci left: 6.353470e-04	ci right 7.934184e-04	k: 320	n:450000
LCTL   450000 perm   177 sec   (2548 perm/sec)   p_kst 7.111111e-04   p_cons 1.688711e-01   p_joint 9.977778e-04

Joint ci ratio: 1.964066e-01	ci left: 7.802567e-04	ci right 9.522174e-04	k: 397	n:460000
Cons ci ratio: 1.282359e-02	ci left: 1.677576e-01	ci right 1.699249e-01	k: 77666	n:460000
KS ci ratio: 2.177008e-01	ci left: 6.277002e-04	ci right 7.830482e-04	k: 323	n:460000
LCTL   460000 perm   182 sec   (2521 perm/sec)   p_kst 7.021739e-04   p_cons 1.688391e-01   p_joint 8.630435e-04

Joint ci ratio: 1.942228e-01	ci left: 7.818681e-04	ci right 9.520415e-04	k: 406	n:470000
Cons ci ratio: 1.268618e-02	ci left: 1.677747e-01	ci right 1.699188e-01	k: 79357	n:470000
KS ci ratio: 2.157129e-01	ci left: 6.264179e-04	ci right 7.798454e-04	k: 329	n:470000
LCTL   470000 perm   188 sec   (2495 perm/sec)   p_kst 7.000000e-04   p_cons 1.688447e-01   p_joint 8.638298e-04

Joint ci ratio: 1.932763e-01	ci left: 7.735080e-04	ci right 9.409448e-04	k: 410	n:480000
Cons ci ratio: 1.255776e-02	ci left: 1.676873e-01	ci right 1.698084e-01	k: 80998	n:480000
KS ci ratio: 2.144180e-01	ci left: 6.212518e-04	ci right 7.723804e-04	k: 333	n:480000
LCTL   480000 perm   195 sec   (2467 perm/sec)   p_kst 6.937500e-04   p_cons 1.687458e-01   p_joint 8.541667e-04

Joint ci ratio: 1.900653e-01	ci left: 7.849230e-04	ci right 9.516820e-04	k: 424	n:490000
Cons ci ratio: 1.242476e-02	ci left: 1.677929e-01	ci right 1.698927e-01	k: 82732	n:490000
KS ci ratio: 2.115858e-01	ci left: 6.259610e-04	ci right 7.759630e-04	k: 342	n:490000
LCTL   490000 perm   201 sec   (2442 perm/sec)   p_kst 6.979592e-04   p_cons 1.688408e-01   p_joint 8.653061e-04

Joint ci ratio: 1.874369e-01	ci left: 7.920908e-04	ci right 9.577808e-04	k: 436	n:500000
Cons ci ratio: 1.230597e-02	ci left: 1.676649e-01	ci right 1.697429e-01	k: 84351	n:500000
KS ci ratio: 2.085667e-01	ci left: 6.323899e-04	ci right 7.814941e-04	k: 352	n:500000
LCTL   500000 perm   207 sec   (2416 perm/sec)   p_kst 7.040000e-04   p_cons 1.687020e-01   p_joint 8.720000e-04

Joint ci ratio: 1.851210e-01	ci left: 7.971227e-04	ci right 9.615738e-04	k: 447	n:510000
Cons ci ratio: 1.218942e-02	ci left: 1.675675e-01	ci right 1.696245e-01	k: 85983	n:510000
KS ci ratio: 2.059573e-01	ci left: 6.367214e-04	ci right 7.847321e-04	k: 361	n:510000
LCTL   510000 perm   213 sec   (2392 perm/sec)   p_kst 7.078431e-04   p_cons 1.685941e-01   p_joint 8.764706e-04

Joint ci ratio: 1.961700e-01	ci left: 6.920525e-04	ci right 8.443678e-04	k: 398	n:520000
Cons ci ratio: 1.207388e-02	ci left: 1.675257e-01	ci right 1.695626e-01	k: 87642	n:520000
KS ci ratio: 2.048294e-01	ci left: 6.317733e-04	ci right 7.777288e-04	k: 365	n:520000
LCTL   520000 perm   220 sec   (2369 perm/sec)   p_kst 7.019231e-04   p_cons 1.685423e-01   p_joint 7.653846e-04

Joint ci ratio: 1.951947e-01	ci left: 6.861721e-04	ci right 8.363531e-04	k: 402	n:530000
Cons ci ratio: 1.195931e-02	ci left: 1.675383e-01	ci right 1.695559e-01	k: 89329	n:530000
KS ci ratio: 2.039958e-01	ci left: 6.252235e-04	ci right 7.690047e-04	k: 368	n:530000
LCTL   530000 perm   226 sec   (2345 perm/sec)   p_kst 6.943396e-04   p_cons 1.685453e-01   p_joint 7.584906e-04

Joint ci ratio: 2.007566e-01	ci left: 6.347418e-04	ci right 7.781102e-04	k: 380	n:540000
Cons ci ratio: 1.184668e-02	ci left: 1.675801e-01	ci right 1.695790e-01	k: 91032	n:540000
KS ci ratio: 2.007566e-01	ci left: 6.347418e-04	ci right 7.781102e-04	k: 380	n:540000
LCTL   540000 perm   232 sec   (2323 perm/sec)   p_kst 7.037037e-04   p_cons 1.685778e-01   p_joint 7.037037e-04

Joint ci ratio: 1.896283e-01	ci left: 7.027557e-04	ci right 8.516750e-04	k: 426	n:550000
Cons ci ratio: 1.173566e-02	ci left: 1.676567e-01	ci right 1.696377e-01	k: 92755	n:550000
KS ci ratio: 1.981723e-01	ci left: 6.404750e-04	ci right 7.830511e-04	k: 390	n:550000
LCTL   550000 perm   239 sec   (2301 perm/sec)   p_kst 7.090909e-04   p_cons 1.686455e-01   p_joint 7.745455e-04

Joint ci ratio: 1.925861e-01	ci left: 6.681017e-04	ci right 8.121445e-04	k: 413	n:560000
Cons ci ratio: 1.162940e-02	ci left: 1.676897e-01	ci right 1.696530e-01	k: 94455	n:560000
KS ci ratio: 1.969176e-01	ci left: 6.375248e-04	ci right 7.784379e-04	k: 395	n:560000
LCTL   560000 perm   246 sec   (2279 perm/sec)   p_kst 7.053571e-04   p_cons 1.686696e-01   p_joint 7.375000e-04

Joint ci ratio: 1.898535e-01	ci left: 6.764257e-04	ci right 8.199552e-04	k: 425	n:570000
Cons ci ratio: 1.153016e-02	ci left: 1.676201e-01	ci right 1.695657e-01	k: 96097	n:570000
KS ci ratio: 1.939993e-01	ci left: 6.463629e-04	ci right 7.868622e-04	k: 407	n:570000
LCTL   570000 perm   253 sec   (2256 perm/sec)   p_kst 7.140351e-04   p_cons 1.685912e-01   p_joint 7.456140e-04

Joint ci ratio: 1.880954e-01	ci left: 6.779038e-04	ci right 8.202629e-04	k: 433	n:580000
Cons ci ratio: 1.143026e-02	ci left: 1.676304e-01	ci right 1.695591e-01	k: 97784	n:580000
KS ci ratio: 1.921247e-01	ci left: 6.483452e-04	ci right 7.877545e-04	k: 415	n:580000
LCTL   580000 perm   260 sec   (2235 perm/sec)   p_kst 7.155172e-04   p_cons 1.685931e-01   p_joint 7.465517e-04

Joint ci ratio: 1.872351e-01	ci left: 6.728749e-04	ci right 8.134582e-04	k: 437	n:590000
Cons ci ratio: 1.133024e-02	ci left: 1.677063e-01	ci right 1.696190e-01	k: 99510	n:590000
KS ci ratio: 1.912082e-01	ci left: 6.438105e-04	ci right 7.815076e-04	k: 419	n:590000
LCTL   590000 perm   267 sec   (2212 perm/sec)   p_kst 7.101695e-04   p_cons 1.686610e-01   p_joint 7.406780e-04

Joint ci ratio: 1.853404e-01	ci left: 6.759609e-04	ci right 8.155991e-04	k: 446	n:600000
Cons ci ratio: 1.123593e-02	ci left: 1.677017e-01	ci right 1.695982e-01	k: 101189	n:600000
KS ci ratio: 1.891916e-01	ci left: 6.473662e-04	ci right 7.841957e-04	k: 428	n:600000
LCTL   600000 perm   274 sec   (2190 perm/sec)   p_kst 7.133333e-04   p_cons 1.686483e-01   p_joint 7.433333e-04

Joint ci ratio: 1.837037e-01	ci left: 6.773886e-04	ci right 8.159485e-04	k: 454	n:610000
Cons ci ratio: 1.114440e-02	ci left: 1.676857e-01	ci right 1.695666e-01	k: 102861	n:610000
KS ci ratio: 1.874517e-01	ci left: 6.492502e-04	ci right 7.850723e-04	k: 436	n:610000
LCTL   610000 perm   282 sec   (2167 perm/sec)   p_kst 7.147541e-04   p_cons 1.686246e-01   p_joint 7.442623e-04

Joint ci ratio: 1.827030e-01	ci left: 6.741576e-04	ci right 8.112221e-04	k: 459	n:620000
Cons ci ratio: 1.105112e-02	ci left: 1.677702e-01	ci right 1.696361e-01	k: 104595	n:620000
KS ci ratio: 1.863888e-01	ci left: 6.464655e-04	ci right 7.808514e-04	k: 441	n:620000
LCTL   620000 perm   289 sec   (2146 perm/sec)   p_kst 7.112903e-04   p_cons 1.687016e-01   p_joint 7.403226e-04

Joint ci ratio: 1.809413e-01	ci left: 6.770923e-04	ci right 8.132806e-04	k: 468	n:630000
Cons ci ratio: 1.096307e-02	ci left: 1.677776e-01	ci right 1.696286e-01	k: 106282	n:630000
KS ci ratio: 1.845194e-01	ci left: 6.498268e-04	ci right 7.834050e-04	k: 450	n:630000
LCTL   630000 perm   296 sec   (2126 perm/sec)   p_kst 7.142857e-04   p_cons 1.687016e-01   p_joint 7.428571e-04

Joint ci ratio: 1.786693e-01	ci left: 6.844191e-04	ci right 8.201658e-04	k: 480	n:640000
Cons ci ratio: 1.087690e-02	ci left: 1.677895e-01	ci right 1.696260e-01	k: 107972	n:640000
KS ci ratio: 1.823089e-01	ci left: 6.560718e-04	ci right 7.891398e-04	k: 461	n:640000
LCTL   640000 perm   304 sec   (2107 perm/sec)   p_kst 7.203125e-04   p_cons 1.687063e-01   p_joint 7.500000e-04

Joint ci ratio: 1.775655e-01	ci left: 6.827088e-04	ci right 8.171898e-04	k: 486	n:650000
Cons ci ratio: 1.079374e-02	ci left: 1.677750e-01	ci right 1.695972e-01	k: 109645	n:650000
KS ci ratio: 1.811367e-01	ci left: 6.547892e-04	ci right 7.866494e-04	k: 467	n:650000
LCTL   650000 perm   311 sec   (2088 perm/sec)   p_kst 7.184615e-04   p_cons 1.686846e-01   p_joint 7.476923e-04

Joint ci ratio: 1.768412e-01	ci left: 6.781563e-04	ci right 8.111375e-04	k: 490	n:660000
Cons ci ratio: 1.071298e-02	ci left: 1.677473e-01	ci right 1.695556e-01	k: 111309	n:660000
KS ci ratio: 1.805595e-01	ci left: 6.492077e-04	ci right 7.794817e-04	k: 470	n:660000
LCTL   660000 perm   319 sec   (2069 perm/sec)   p_kst 7.121212e-04   p_cons 1.686500e-01   p_joint 7.424242e-04

Joint ci ratio: 1.761257e-01	ci left: 6.737409e-04	ci right 8.052648e-04	k: 494	n:670000
Cons ci ratio: 1.063129e-02	ci left: 1.677921e-01	ci right 1.695869e-01	k: 113021	n:670000
KS ci ratio: 1.797980e-01	ci left: 6.452188e-04	ci right 7.740870e-04	k: 474	n:670000
LCTL   670000 perm   327 sec   (2051 perm/sec)   p_kst 7.074627e-04   p_cons 1.686881e-01   p_joint 7.373134e-04

Joint ci ratio: 1.754188e-01	ci left: 6.694564e-04	ci right 7.995637e-04	k: 498	n:680000
Cons ci ratio: 1.055216e-02	ci left: 1.678165e-01	ci right 1.695981e-01	k: 114720	n:680000
KS ci ratio: 1.792335e-01	ci left: 6.399437e-04	ci right 7.673133e-04	k: 477	n:680000
LCTL   680000 perm   334 sec   (2033 perm/sec)   p_kst 7.014706e-04   p_cons 1.687059e-01   p_joint 7.323529e-04

Joint ci ratio: 1.743737e-01	ci left: 6.680690e-04	ci right 7.970518e-04	k: 504	n:690000
Cons ci ratio: 1.047558e-02	ci left: 1.678185e-01	ci right 1.695872e-01	k: 116404	n:690000
KS ci ratio: 1.783036e-01	ci left: 6.375912e-04	ci right 7.637632e-04	k: 482	n:690000
LCTL   690000 perm   342 sec   (2016 perm/sec)   p_kst 6.985507e-04   p_cons 1.687014e-01   p_joint 7.304348e-04

Joint ci ratio: 1.725046e-01	ci left: 6.735575e-04	ci right 8.020609e-04	k: 515	n:700000
Cons ci ratio: 1.040017e-02	ci left: 1.678334e-01	ci right 1.695894e-01	k: 118097	n:700000
KS ci ratio: 1.763068e-01	ci left: 6.434998e-04	ci right 7.692631e-04	k: 493	n:700000
LCTL   700000 perm   350 sec   (1998 perm/sec)   p_kst 7.042857e-04   p_cons 1.687100e-01   p_joint 7.357143e-04

Joint ci ratio: 1.721719e-01	ci left: 6.667660e-04	ci right 7.937028e-04	k: 517	n:710000
Cons ci ratio: 1.033000e-02	ci left: 1.677495e-01	ci right 1.694927e-01	k: 119720	n:710000
KS ci ratio: 1.759516e-01	ci left: 6.371290e-04	ci right 7.613696e-04	k: 495	n:710000
LCTL   710000 perm   358 sec   (1981 perm/sec)   p_kst 6.971831e-04   p_cons 1.686197e-01   p_joint 7.281690e-04

Joint ci ratio: 1.705334e-01	ci left: 6.707987e-04	ci right 7.971630e-04	k: 527	n:720000
Cons ci ratio: 1.025878e-02	ci left: 1.677345e-01	ci right 1.694654e-01	k: 121391	n:720000
KS ci ratio: 1.742039e-01	ci left: 6.415604e-04	ci right 7.652918e-04	k: 505	n:720000
LCTL   720000 perm   367 sec   (1964 perm/sec)   p_kst 7.013889e-04   p_cons 1.685986e-01   p_joint 7.319444e-04

Joint ci ratio: 1.695728e-01	ci left: 6.694790e-04	ci right 7.948117e-04	k: 533	n:730000
Cons ci ratio: 1.018857e-02	ci left: 1.677322e-01	ci right 1.694512e-01	k: 123071	n:730000
KS ci ratio: 1.733498e-01	ci left: 6.393232e-04	ci right 7.619553e-04	k: 510	n:730000
LCTL   730000 perm   375 sec   (1947 perm/sec)   p_kst 6.986301e-04   p_cons 1.685904e-01   p_joint 7.301370e-04

Joint ci ratio: 1.683166e-01	ci left: 6.707857e-04	ci right 7.953384e-04	k: 541	n:740000
Cons ci ratio: 1.011511e-02	ci left: 1.678595e-01	ci right 1.695674e-01	k: 124847	n:740000
KS ci ratio: 1.720084e-01	ci left: 6.410273e-04	ci right 7.629362e-04	k: 518	n:740000
LCTL   740000 perm   383 sec   (1931 perm/sec)   p_kst 7.000000e-04   p_cons 1.687122e-01   p_joint 7.310811e-04

Joint ci ratio: 1.629876e-01	ci left: 7.078536e-04	ci right 8.347202e-04	k: 577	n:750000
Cons ci ratio: 1.023559e-02	ci left: 1.627355e-01	ci right 1.644111e-01	k: 122679	n:750000
KS ci ratio: 1.706978e-01	ci left: 6.426896e-04	ci right 7.638873e-04	k: 526	n:750000
LCTL   750000 perm   392 sec   (1915 perm/sec)   p_kst 7.013333e-04   p_cons 1.635720e-01   p_joint 7.693333e-04

Joint ci ratio: 1.521737e-01	ci left: 8.059798e-04	ci right 9.399769e-04	k: 662	n:760000
Cons ci ratio: 1.016909e-02	ci left: 1.627125e-01	ci right 1.643769e-01	k: 124293	n:760000
KS ci ratio: 1.697344e-01	ci left: 6.417915e-04	ci right 7.620669e-04	k: 532	n:760000
LCTL   760000 perm   400 sec   (1899 perm/sec)   p_kst 7.000000e-04   p_cons 1.635434e-01   p_joint 8.710526e-04

Joint ci ratio: 1.426880e-01	ci left: 9.093426e-04	ci right 1.050299e-03	k: 753	n:770000
Cons ci ratio: 1.010262e-02	ci left: 1.627238e-01	ci right 1.643774e-01	k: 125933	n:770000
KS ci ratio: 1.681639e-01	ci left: 6.458946e-04	ci right 7.657055e-04	k: 542	n:770000
LCTL   770000 perm   409 sec   (1882 perm/sec)   p_kst 7.038961e-04   p_cons 1.635494e-01   p_joint 9.779221e-04

Joint ci ratio: 1.422176e-01	ci left: 9.038660e-04	ci right 1.043472e-03	k: 758	n:780000
Cons ci ratio: 1.003744e-02	ci left: 1.627349e-01	ci right 1.643778e-01	k: 127573	n:780000
KS ci ratio: 1.675482e-01	ci left: 6.425265e-04	ci right 7.612323e-04	k: 546	n:780000
LCTL   780000 perm   418 sec   (1866 perm/sec)   p_kst 7.000000e-04   p_cons 1.635551e-01   p_joint 9.717949e-04

Joint ci ratio: 1.416592e-01	ci left: 8.997497e-04	ci right 1.038129e-03	k: 764	n:790000
Cons ci ratio: 9.974340e-03	ci left: 1.627230e-01	ci right 1.643554e-01	k: 129195	n:790000
KS ci ratio: 1.670911e-01	ci left: 6.380316e-04	ci right 7.555529e-04	k: 549	n:790000
LCTL   790000 perm   427 sec   (1852 perm/sec)   p_kst 6.949367e-04   p_cons 1.635380e-01   p_joint 9.670886e-04

Joint ci ratio: 1.401103e-01	ci left: 9.090042e-04	ci right 1.047150e-03	k: 781	n:800000
Cons ci ratio: 9.911052e-03	ci left: 1.627488e-01	ci right 1.643711e-01	k: 130847	n:800000
KS ci ratio: 1.655921e-01	ci left: 6.420360e-04	ci right 7.591283e-04	k: 559	n:800000
LCTL   800000 perm   435 sec   (1837 perm/sec)   p_kst 6.987500e-04   p_cons 1.635588e-01   p_joint 9.762500e-04

Joint ci ratio: 1.393992e-01	ci left: 9.073131e-04	ci right 1.044444e-03	k: 789	n:810000
Cons ci ratio: 9.849443e-03	ci left: 1.627605e-01	ci right 1.643728e-01	k: 132488	n:810000
KS ci ratio: 1.648580e-01	ci left: 6.400271e-04	ci right 7.561843e-04	k: 564	n:810000
LCTL   810000 perm   444 sec   (1823 perm/sec)   p_kst 6.962963e-04   p_cons 1.635654e-01   p_joint 9.740741e-04

Joint ci ratio: 1.380939e-01	ci left: 9.139062e-04	ci right 1.050634e-03	k: 804	n:820000
Cons ci ratio: 9.790626e-03	ci left: 1.627257e-01	ci right 1.643279e-01	k: 134091	n:820000
KS ci ratio: 1.629929e-01	ci left: 6.474254e-04	ci right 7.634657e-04	k: 577	n:820000
LCTL   820000 perm   453 sec   (1809 perm/sec)   p_kst 7.036585e-04   p_cons 1.635256e-01   p_joint 9.804878e-04

Joint ci ratio: 1.374130e-01	ci left: 9.122016e-04	ci right 1.047946e-03	k: 812	n:830000
Cons ci ratio: 9.729423e-03	ci left: 1.627879e-01	ci right 1.643807e-01	k: 135774	n:830000
KS ci ratio: 1.624322e-01	ci left: 6.442481e-04	ci right 7.592828e-04	k: 581	n:830000
LCTL   830000 perm   462 sec   (1795 perm/sec)   p_kst 7.000000e-04   p_cons 1.635831e-01   p_joint 9.783133e-04

Joint ci ratio: 1.366587e-01	ci left: 9.116890e-04	ci right 1.046552e-03	k: 821	n:840000
Cons ci ratio: 9.672718e-03	ci left: 1.627537e-01	ci right 1.643367e-01	k: 137377	n:840000
KS ci ratio: 1.614641e-01	ci left: 6.445741e-04	ci right 7.589145e-04	k: 588	n:840000
LCTL   840000 perm   472 sec   (1781 perm/sec)   p_kst 7.000000e-04   p_cons 1.635440e-01   p_joint 9.773810e-04

Joint ci ratio: 1.439419e-01	ci left: 8.090087e-04	ci right 9.356090e-04	k: 740	n:850000
Cons ci ratio: 9.614430e-03	ci left: 1.627930e-01	ci right 1.643669e-01	k: 139042	n:850000
KS ci ratio: 1.603785e-01	ci left: 6.460236e-04	ci right 7.597765e-04	k: 596	n:850000
LCTL   850000 perm   481 sec   (1767 perm/sec)   p_kst 7.011765e-04   p_cons 1.635788e-01   p_joint 8.705882e-04

Joint ci ratio: 1.429803e-01	ci left: 8.108122e-04	ci right 9.367748e-04	k: 750	n:860000
Cons ci ratio: 9.558198e-03	ci left: 1.628025e-01	ci right 1.643672e-01	k: 140682	n:860000
KS ci ratio: 1.594464e-01	ci left: 6.463256e-04	ci right 7.594069e-04	k: 603	n:860000
LCTL   860000 perm   490 sec   (1754 perm/sec)   p_kst 7.011628e-04   p_cons 1.635837e-01   p_joint 8.720930e-04

Joint ci ratio: 1.420376e-01	ci left: 8.125770e-04	ci right 9.379110e-04	k: 760	n:870000
Cons ci ratio: 9.503181e-03	ci left: 1.628049e-01	ci right 1.643606e-01	k: 142316	n:870000
KS ci ratio: 1.582714e-01	ci left: 6.488302e-04	ci right 7.614337e-04	k: 612	n:870000
LCTL   870000 perm   500 sec   (1741 perm/sec)   p_kst 7.034483e-04   p_cons 1.635816e-01   p_joint 8.735632e-04

Joint ci ratio: 1.404766e-01	ci left: 8.219789e-04	ci right 9.472530e-04	k: 777	n:880000
Cons ci ratio: 9.448436e-03	ci left: 1.628265e-01	ci right 1.643734e-01	k: 143967	n:880000
KS ci ratio: 1.564939e-01	ci left: 6.567399e-04	ci right 7.693159e-04	k: 626	n:880000
LCTL   880000 perm   509 sec   (1729 perm/sec)   p_kst 7.113636e-04   p_cons 1.635989e-01   p_joint 8.829545e-04

Joint ci ratio: 1.394937e-01	ci left: 8.246700e-04	ci right 9.494018e-04	k: 788	n:890000
Cons ci ratio: 9.397096e-03	ci left: 1.627759e-01	ci right 1.643139e-01	k: 145554	n:890000
KS ci ratio: 1.552604e-01	ci left: 6.601586e-04	ci right 7.723457e-04	k: 636	n:890000
LCTL   890000 perm   518 sec   (1717 perm/sec)   p_kst 7.146067e-04   p_cons 1.635438e-01   p_joint 8.853933e-04

Joint ci ratio: 1.385312e-01	ci left: 8.273042e-04	ci right 9.514998e-04	k: 799	n:900000
Cons ci ratio: 9.346166e-03	ci left: 1.627387e-01	ci right 1.642679e-01	k: 147152	n:900000
KS ci ratio: 1.544143e-01	ci left: 6.602999e-04	ci right 7.718429e-04	k: 643	n:900000
LCTL   900000 perm   528 sec   (1704 perm/sec)   p_kst 7.144444e-04   p_cons 1.635022e-01   p_joint 8.877778e-04

Joint ci ratio: 1.404786e-01	ci left: 7.948799e-04	ci right 9.160259e-04	k: 777	n:910000
Cons ci ratio: 9.295419e-03	ci left: 1.627209e-01	ci right 1.642416e-01	k: 148767	n:910000
KS ci ratio: 1.537000e-01	ci left: 6.593831e-04	ci right 7.702086e-04	k: 649	n:910000
LCTL   910000 perm   538 sec   (1691 perm/sec)   p_kst 7.131868e-04   p_cons 1.634802e-01   p_joint 8.538462e-04

Joint ci ratio: 1.400297e-01	ci left: 7.914839e-04	ci right 9.116946e-04	k: 782	n:920000
Cons ci ratio: 9.245160e-03	ci left: 1.627134e-01	ci right 1.642257e-01	k: 150391	n:920000
KS ci ratio: 1.533469e-01	ci left: 6.553514e-04	ci right 7.652229e-04	k: 652	n:920000
LCTL   920000 perm   548 sec   (1678 perm/sec)   p_kst 7.086957e-04   p_cons 1.634685e-01   p_joint 8.500000e-04

Joint ci ratio: 1.360044e-01	ci left: 8.317674e-04	ci right 9.541712e-04	k: 829	n:930000
Cons ci ratio: 9.195273e-03	ci left: 1.627188e-01	ci right 1.642230e-01	k: 152027	n:930000
KS ci ratio: 1.518424e-01	ci left: 6.617495e-04	ci right 7.715063e-04	k: 665	n:930000
LCTL   930000 perm   558 sec   (1666 perm/sec)   p_kst 7.150538e-04   p_cons 1.634699e-01   p_joint 8.913978e-04

Joint ci ratio: 1.381026e-01	ci left: 7.972340e-04	ci right 9.165146e-04	k: 804	n:940000
Cons ci ratio: 9.146364e-03	ci left: 1.627189e-01	ci right 1.642151e-01	k: 153658	n:940000
KS ci ratio: 1.508266e-01	ci left: 6.639216e-04	ci right 7.732355e-04	k: 674	n:940000
LCTL   940000 perm   568 sec   (1654 perm/sec)   p_kst 7.170213e-04   p_cons 1.634660e-01   p_joint 8.553191e-04

Joint ci ratio: 1.375910e-01	ci left: 7.949400e-04	ci right 9.134007e-04	k: 810	n:950000
Cons ci ratio: 9.096755e-03	ci left: 1.627631e-01	ci right 1.642515e-01	k: 155331	n:950000
KS ci ratio: 1.502712e-01	ci left: 6.619978e-04	ci right 7.705575e-04	k: 679	n:950000
LCTL   950000 perm   579 sec   (1642 perm/sec)   p_kst 7.147368e-04   p_cons 1.635063e-01   p_joint 8.526316e-04

Joint ci ratio: 1.368338e-01	ci left: 7.957125e-04	ci right 9.135827e-04	k: 819	n:960000
Cons ci ratio: 9.048290e-03	ci left: 1.627961e-01	ci right 1.642768e-01	k: 156994	n:960000
KS ci ratio: 1.492864e-01	ci left: 6.641257e-04	ci right 7.722569e-04	k: 688	n:960000
LCTL   960000 perm   589 sec   (1631 perm/sec)   p_kst 7.166667e-04   p_cons 1.635354e-01   p_joint 8.531250e-04

Joint ci ratio: 1.361712e-01	ci left: 7.954751e-04	ci right 9.126932e-04	k: 827	n:970000
Cons ci ratio: 9.004324e-03	ci left: 1.627151e-01	ci right 1.641879e-01	k: 158547	n:970000
KS ci ratio: 1.484272e-01	ci left: 6.652193e-04	ci right 7.728498e-04	k: 696	n:970000
LCTL   970000 perm   599 sec   (1619 perm/sec)   p_kst 7.175258e-04   p_cons 1.634505e-01   p_joint 8.525773e-04

Joint ci ratio: 1.352754e-01	ci left: 7.982014e-04	ci right 9.149853e-04	k: 838	n:980000
Cons ci ratio: 8.958617e-03	ci left: 1.627082e-01	ci right 1.641734e-01	k: 160171	n:980000
KS ci ratio: 1.472693e-01	ci left: 6.692407e-04	ci right 7.766029e-04	k: 707	n:980000
LCTL   980000 perm   610 sec   (1608 perm/sec)   p_kst 7.214286e-04   p_cons 1.634398e-01   p_joint 8.551020e-04

Joint ci ratio: 1.431794e-01	ci left: 7.023912e-04	ci right 8.116750e-04	k: 748	n:990000
Cons ci ratio: 8.912579e-03	ci left: 1.627327e-01	ci right 1.641905e-01	k: 161826	n:990000
KS ci ratio: 1.465467e-01	ci left: 6.692915e-04	ci right 7.760888e-04	k: 714	n:990000
LCTL   990000 perm   620 sec   (1597 perm/sec)   p_kst 7.212121e-04   p_cons 1.634606e-01   p_joint 7.555556e-04

Joint ci ratio: 1.460371e-01	ci left: 6.674155e-04	ci right 7.735109e-04	k: 719	n:1000000
Cons ci ratio: 8.869221e-03	ci left: 1.626958e-01	ci right 1.641462e-01	k: 163420	n:1000000
KS ci ratio: 1.460371e-01	ci left: 6.674155e-04	ci right 7.735109e-04	k: 719	n:1000000
LCTL   1000000 perm   631 sec   (1586 perm/sec)   p_kst 7.190000e-04   p_cons 1.634200e-01   p_joint 7.190000e-04

Joint ci ratio: 1.330730e-01	ci left: 8.012848e-04	ci right 9.164602e-04	k: 866	n:1010000
Cons ci ratio: 8.823231e-03	ci left: 1.627605e-01	ci right 1.642039e-01	k: 165116	n:1010000
KS ci ratio: 1.450332e-01	ci left: 6.703480e-04	ci right 7.761136e-04	k: 729	n:1010000
LCTL   1010000 perm   641 sec   (1575 perm/sec)   p_kst 7.217822e-04   p_cons 1.634812e-01   p_joint 8.574257e-04

Joint ci ratio: 1.326911e-01	ci left: 7.981680e-04	ci right 9.125402e-04	k: 871	n:1020000
Cons ci ratio: 8.779049e-03	ci left: 1.627896e-01	ci right 1.642260e-01	k: 166777	n:1020000
KS ci ratio: 1.446377e-01	ci left: 6.675554e-04	ci right 7.725683e-04	k: 733	n:1020000
LCTL   1020000 perm   652 sec   (1565 perm/sec)   p_kst 7.186275e-04   p_cons 1.635069e-01   p_joint 8.539216e-04

Joint ci ratio: 1.320116e-01	ci left: 7.988674e-04	ci right 9.127076e-04	k: 880	n:1030000
Cons ci ratio: 8.734037e-03	ci left: 1.628648e-01	ci right 1.642944e-01	k: 168486	n:1030000
KS ci ratio: 1.438558e-01	ci left: 6.685609e-04	ci right 7.731147e-04	k: 741	n:1030000
LCTL   1030000 perm   663 sec   (1554 perm/sec)   p_kst 7.194175e-04   p_cons 1.635786e-01   p_joint 8.543689e-04

Joint ci ratio: 1.395912e-01	ci left: 7.047962e-04	ci right 8.114775e-04	k: 787	n:1040000
Cons ci ratio: 8.690260e-03	ci left: 1.629212e-01	ci right 1.643441e-01	k: 170177	n:1040000
KS ci ratio: 1.428009e-01	ci left: 6.723302e-04	ci right 7.766368e-04	k: 752	n:1040000
LCTL   1040000 perm   674 sec   (1544 perm/sec)   p_kst 7.230769e-04   p_cons 1.636317e-01   p_joint 7.567308e-04

Joint ci ratio: 1.302490e-01	ci left: 8.057584e-04	ci right 9.189289e-04	k: 904	n:1050000
Cons ci ratio: 8.647555e-03	ci left: 1.629633e-01	ci right 1.643795e-01	k: 171854	n:1050000
KS ci ratio: 1.419550e-01	ci left: 6.741932e-04	ci right 7.781167e-04	k: 761	n:1050000
LCTL   1050000 perm   685 sec   (1534 perm/sec)   p_kst 7.247619e-04   p_cons 1.636705e-01   p_joint 8.609524e-04

Joint ci ratio: 1.298909e-01	ci left: 8.027203e-04	ci right 9.151303e-04	k: 909	n:1060000
Cons ci ratio: 8.606630e-03	ci left: 1.629678e-01	ci right 1.643774e-01	k: 173492	n:1060000
KS ci ratio: 1.414917e-01	ci left: 6.723826e-04	ci right 7.756602e-04	k: 766	n:1060000
LCTL   1060000 perm   696 sec   (1524 perm/sec)   p_kst 7.226415e-04   p_cons 1.636717e-01   p_joint 8.575472e-04

Joint ci ratio: 1.293943e-01	ci left: 8.015481e-04	ci right 9.133318e-04	k: 916	n:1070000
Cons ci ratio: 8.568650e-03	ci left: 1.628967e-01	ci right 1.642995e-01	k: 175049	n:1070000
KS ci ratio: 1.408505e-01	ci left: 6.724096e-04	ci right 7.751840e-04	k: 773	n:1070000
LCTL   1070000 perm   707 sec   (1514 perm/sec)   p_kst 7.224299e-04   p_cons 1.635972e-01   p_joint 8.560748e-04

Joint ci ratio: 1.290431e-01	ci left: 7.986063e-04	ci right 9.096543e-04	k: 921	n:1080000
Cons ci ratio: 8.529291e-03	ci left: 1.628871e-01	ci right 1.642832e-01	k: 176671	n:1080000
KS ci ratio: 1.405786e-01	ci left: 6.688635e-04	ci right 7.708820e-04	k: 776	n:1080000
LCTL   1080000 perm   718 sec   (1504 perm/sec)   p_kst 7.185185e-04   p_cons 1.635843e-01   p_joint 8.527778e-04

Joint ci ratio: 1.285562e-01	ci left: 7.974947e-04	ci right 9.079378e-04	k: 928	n:1090000
Cons ci ratio: 8.489332e-03	ci left: 1.629142e-01	ci right 1.643041e-01	k: 178333	n:1090000
KS ci ratio: 1.399496e-01	ci left: 6.689238e-04	ci right 7.704569e-04	k: 783	n:1090000
LCTL   1090000 perm   729 sec   (1495 perm/sec)   p_kst 7.183486e-04   p_cons 1.636083e-01   p_joint 8.513761e-04

Joint ci ratio: 1.280062e-01	ci left: 7.972841e-04	ci right 9.071898e-04	k: 936	n:1100000
Cons ci ratio: 8.450771e-03	ci left: 1.629137e-01	ci right 1.642972e-01	k: 179965	n:1100000
KS ci ratio: 1.394172e-01	ci left: 6.681066e-04	ci right 7.690978e-04	k: 789	n:1100000
LCTL   1100000 perm   741 sec   (1485 perm/sec)   p_kst 7.172727e-04   p_cons 1.636045e-01   p_joint 8.509091e-04

Joint ci ratio: 1.272612e-01	ci left: 7.996949e-04	ci right 9.092430e-04	k: 947	n:1110000
Cons ci ratio: 8.412536e-03	ci left: 1.629195e-01	ci right 1.642967e-01	k: 181604	n:1110000
KS ci ratio: 1.387165e-01	ci left: 6.690441e-04	ci right 7.696268e-04	k: 797	n:1110000
LCTL   1110000 perm   752 sec   (1476 perm/sec)   p_kst 7.180180e-04   p_cons 1.636072e-01   p_joint 8.531532e-04

Joint ci ratio: 1.265291e-01	ci left: 8.020645e-04	ci right 9.112577e-04	k: 958	n:1120000
Cons ci ratio: 8.375472e-03	ci left: 1.629038e-01	ci right 1.642748e-01	k: 183219	n:1120000
KS ci ratio: 1.379408e-01	ci left: 6.708281e-04	ci right 7.710687e-04	k: 806	n:1120000
LCTL   1120000 perm   763 sec   (1467 perm/sec)   p_kst 7.196429e-04   p_cons 1.635884e-01   p_joint 8.553571e-04

Joint ci ratio: 1.260700e-01	ci left: 8.009655e-04	ci right 9.095838e-04	k: 965	n:1130000
Cons ci ratio: 8.337411e-03	ci left: 1.629369e-01	ci right 1.643020e-01	k: 184889	n:1130000
KS ci ratio: 1.373464e-01	ci left: 6.708730e-04	ci right 7.706530e-04	k: 813	n:1130000
LCTL   1130000 perm   775 sec   (1458 perm/sec)   p_kst 7.194690e-04   p_cons 1.636186e-01   p_joint 8.539823e-04

Joint ci ratio: 1.332334e-01	ci left: 7.082120e-04	ci right 8.101415e-04	k: 864	n:1140000
Cons ci ratio: 8.299252e-03	ci left: 1.629897e-01	ci right 1.643489e-01	k: 186582	n:1140000
KS ci ratio: 1.360977e-01	ci left: 6.776961e-04	ci right 7.775003e-04	k: 828	n:1140000
LCTL   1140000 perm   787 sec   (1449 perm/sec)   p_kst 7.263158e-04   p_cons 1.636684e-01   p_joint 7.578947e-04

Joint ci ratio: 1.326215e-01	ci left: 7.087788e-04	ci right 8.102845e-04	k: 872	n:1150000
Cons ci ratio: 8.262478e-03	ci left: 1.630129e-01	ci right 1.643662e-01	k: 188242	n:1150000
KS ci ratio: 1.355267e-01	ci left: 6.776832e-04	ci right 7.770331e-04	k: 835	n:1150000
LCTL   1150000 perm   799 sec   (1440 perm/sec)   p_kst 7.260870e-04   p_cons 1.636887e-01   p_joint 7.582609e-04

Joint ci ratio: 1.323189e-01	ci left: 7.060026e-04	ci right 8.068619e-04	k: 876	n:1160000
Cons ci ratio: 8.225877e-03	ci left: 1.630460e-01	ci right 1.643936e-01	k: 189914	n:1160000
KS ci ratio: 1.352844e-01	ci left: 6.743397e-04	ci right 7.730084e-04	k: 838	n:1160000
LCTL   1160000 perm   811 sec   (1431 perm/sec)   p_kst 7.224138e-04   p_cons 1.637190e-01   p_joint 7.551724e-04

Joint ci ratio: 1.234151e-01	ci left: 8.083597e-04	ci right 9.155036e-04	k: 1007	n:1170000
Cons ci ratio: 8.191318e-03	ci left: 1.630266e-01	ci right 1.643683e-01	k: 191525	n:1170000
KS ci ratio: 1.346440e-01	ci left: 6.751828e-04	ci right 7.734698e-04	k: 846	n:1170000
LCTL   1170000 perm   823 sec   (1422 perm/sec)   p_kst 7.230769e-04   p_cons 1.636966e-01   p_joint 8.606838e-04

Joint ci ratio: 1.226868e-01	ci left: 8.113657e-04	ci right 9.182274e-04	k: 1019	n:1180000
Cons ci ratio: 8.155424e-03	ci left: 1.630667e-01	ci right 1.644028e-01	k: 193206	n:1180000
KS ci ratio: 1.337779e-01	ci left: 6.784701e-04	ci right 7.765498e-04	k: 857	n:1180000
LCTL   1180000 perm   835 sec   (1413 perm/sec)   p_kst 7.262712e-04   p_cons 1.637339e-01   p_joint 8.635593e-04

Joint ci ratio: 1.221491e-01	ci left: 8.118789e-04	ci right 9.183057e-04	k: 1028	n:1190000
Cons ci ratio: 8.119549e-03	ci left: 1.631212e-01	ci right 1.644519e-01	k: 194905	n:1190000
KS ci ratio: 1.333126e-01	ci left: 6.776422e-04	ci right 7.752345e-04	k: 863	n:1190000
LCTL   1190000 perm   847 sec   (1405 perm/sec)   p_kst 7.252101e-04   p_cons 1.637857e-01   p_joint 8.638655e-04

Joint ci ratio: 1.298974e-01	ci left: 7.090674e-04	ci right 8.083678e-04	k: 909	n:1200000
Cons ci ratio: 8.084512e-03	ci left: 1.631624e-01	ci right 1.644876e-01	k: 196589	n:1200000
KS ci ratio: 1.327759e-01	ci left: 6.776343e-04	ci right 7.748016e-04	k: 870	n:1200000
LCTL   1200000 perm   860 sec   (1396 perm/sec)   p_kst 7.250000e-04   p_cons 1.638242e-01   p_joint 7.575000e-04

Joint ci ratio: 1.295421e-01	ci left: 7.072054e-04	ci right 8.059534e-04	k: 914	n:1210000
Cons ci ratio: 8.050751e-03	ci left: 1.631748e-01	ci right 1.644946e-01	k: 198239	n:1210000
KS ci ratio: 1.324722e-01	ci left: 6.752301e-04	ci right 7.718138e-04	k: 874	n:1210000
LCTL   1210000 perm   872 sec   (1387 perm/sec)   p_kst 7.223140e-04   p_cons 1.638339e-01   p_joint 7.553719e-04

Joint ci ratio: 1.289795e-01	ci left: 7.077540e-04	ci right 8.061165e-04	k: 922	n:1220000
Cons ci ratio: 8.016473e-03	ci left: 1.632190e-01	ci right 1.645335e-01	k: 199928	n:1220000
KS ci ratio: 1.318707e-01	ci left: 6.760360e-04	ci right 7.722615e-04	k: 882	n:1220000
LCTL   1220000 perm   885 sec   (1379 perm/sec)   p_kst 7.229508e-04   p_cons 1.638754e-01   p_joint 7.557377e-04

Joint ci ratio: 1.283552e-01	ci left: 7.090815e-04	ci right 8.071151e-04	k: 931	n:1230000
Cons ci ratio: 7.983672e-03	ci left: 1.632267e-01	ci right 1.645359e-01	k: 201573	n:1230000
KS ci ratio: 1.312037e-01	ci left: 6.776161e-04	ci right 7.735406e-04	k: 891	n:1230000
LCTL   1230000 perm   897 sec   (1371 perm/sec)   p_kst 7.243902e-04   p_cons 1.638805e-01   p_joint 7.569106e-04

Joint ci ratio: 1.279441e-01	ci left: 7.080467e-04	ci right 8.055999e-04	k: 937	n:1240000
Cons ci ratio: 7.951199e-03	ci left: 1.632367e-01	ci right 1.645406e-01	k: 203221	n:1240000
KS ci ratio: 1.307647e-01	ci left: 6.768316e-04	ci right 7.722996e-04	k: 897	n:1240000
LCTL   1240000 perm   910 sec   (1363 perm/sec)   p_kst 7.233871e-04   p_cons 1.638879e-01   p_joint 7.556452e-04

Joint ci ratio: 1.271332e-01	ci left: 7.116761e-04	ci right 8.090611e-04	k: 949	n:1250000
Cons ci ratio: 7.920484e-03	ci left: 1.631995e-01	ci right 1.644980e-01	k: 204810	n:1250000
KS ci ratio: 1.298994e-01	ci left: 6.807040e-04	ci right 7.760339e-04	k: 909	n:1250000
LCTL   1250000 perm   923 sec   (1355 perm/sec)   p_kst 7.272000e-04   p_cons 1.638480e-01   p_joint 7.592000e-04

Joint ci ratio: 1.266012e-01	ci left: 7.121756e-04	ci right 8.091906e-04	k: 957	n:1260000
Cons ci ratio: 7.888979e-03	ci left: 1.632025e-01	ci right 1.644959e-01	k: 206449	n:1260000
KS ci ratio: 1.293321e-01	ci left: 6.814450e-04	ci right 7.764298e-04	k: 917	n:1260000
LCTL   1260000 perm   935 sec   (1347 perm/sec)   p_kst 7.277778e-04   p_cons 1.638484e-01   p_joint 7.595238e-04

Joint ci ratio: 1.234807e-01	ci left: 7.439447e-04	ci right 8.426068e-04	k: 1006	n:1270000
Cons ci ratio: 7.859112e-03	ci left: 1.631614e-01	ci right 1.644496e-01	k: 208032	n:1270000
KS ci ratio: 1.289814e-01	ci left: 6.798890e-04	ci right 7.743804e-04	k: 922	n:1270000
LCTL   1270000 perm   948 sec   (1339 perm/sec)   p_kst 7.259843e-04   p_cons 1.638047e-01   p_joint 7.921260e-04

Joint ci ratio: 1.132493e-01	ci left: 8.821869e-04	ci right 9.888421e-04	k: 1196	n:1280000
Cons ci ratio: 7.828242e-03	ci left: 1.631678e-01	ci right 1.644509e-01	k: 209675	n:1280000
KS ci ratio: 1.284260e-01	ci left: 6.806262e-04	ci right 7.747817e-04	k: 930	n:1280000
LCTL   1280000 perm   961 sec   (1331 perm/sec)   p_kst 7.265625e-04   p_cons 1.638086e-01   p_joint 9.343750e-04

Joint ci ratio: 1.149938e-01	ci left: 8.482369e-04	ci right 9.524745e-04	k: 1160	n:1290000
Cons ci ratio: 7.797843e-03	ci left: 1.631702e-01	ci right 1.644483e-01	k: 211313	n:1290000
KS ci ratio: 1.278097e-01	ci left: 6.821032e-04	ci right 7.759758e-04	k: 939	n:1290000
LCTL   1290000 perm   974 sec   (1324 perm/sec)   p_kst 7.279070e-04   p_cons 1.638085e-01   p_joint 8.992248e-04

Joint ci ratio: 1.146979e-01	ci left: 8.461948e-04	ci right 9.498957e-04	k: 1166	n:1300000
Cons ci ratio: 7.768952e-03	ci left: 1.631319e-01	ci right 1.644050e-01	k: 212898	n:1300000
KS ci ratio: 1.275388e-01	ci left: 6.798349e-04	ci right 7.731819e-04	k: 943	n:1300000
LCTL   1300000 perm   988 sec   (1316 perm/sec)   p_kst 7.253846e-04   p_cons 1.637677e-01   p_joint 8.969231e-04

Joint ci ratio: 1.120850e-01	ci left: 8.805303e-04	ci right 9.858184e-04	k: 1221	n:1310000
Cons ci ratio: 7.739667e-03	ci left: 1.631193e-01	ci right 1.643875e-01	k: 214516	n:1310000
KS ci ratio: 1.270017e-01	ci left: 6.805577e-04	ci right 7.735810e-04	k: 951	n:1310000
LCTL   1310000 perm   1001 sec   (1309 perm/sec)   p_kst 7.259542e-04   p_cons 1.637527e-01   p_joint 9.320611e-04

Joint ci ratio: 1.137754e-01	ci left: 8.473564e-04	ci right 9.503084e-04	k: 1185	n:1320000
Cons ci ratio: 7.709559e-03	ci left: 1.631478e-01	ci right 1.644112e-01	k: 216188	n:1320000
KS ci ratio: 1.264055e-01	ci left: 6.820041e-04	ci right 7.747546e-04	k: 960	n:1320000
LCTL   1320000 perm   1014 sec   (1302 perm/sec)   p_kst 7.272727e-04   p_cons 1.637788e-01   p_joint 8.977273e-04

Joint ci ratio: 1.133461e-01	ci left: 8.475600e-04	ci right 9.501222e-04	k: 1194	n:1330000
Cons ci ratio: 7.680897e-03	ci left: 1.631368e-01	ci right 1.643954e-01	k: 217808	n:1330000
KS ci ratio: 1.259477e-01	ci left: 6.819733e-04	ci right 7.743586e-04	k: 967	n:1330000
LCTL   1330000 perm   1028 sec   (1294 perm/sec)   p_kst 7.270677e-04   p_cons 1.637654e-01   p_joint 8.977444e-04

Joint ci ratio: 1.128748e-01	ci left: 8.484865e-04	ci right 9.507055e-04	k: 1204	n:1340000
Cons ci ratio: 7.652551e-03	ci left: 1.631260e-01	ci right 1.643799e-01	k: 219428	n:1340000
KS ci ratio: 1.254304e-01	ci left: 6.826664e-04	ci right 7.747376e-04	k: 975	n:1340000
LCTL   1340000 perm   1041 sec   (1287 perm/sec)   p_kst 7.276119e-04   p_cons 1.637522e-01   p_joint 8.985075e-04

Joint ci ratio: 1.121785e-01	ci left: 8.529999e-04	ci right 9.550868e-04	k: 1219	n:1350000
Cons ci ratio: 7.625074e-03	ci left: 1.630954e-01	ci right 1.643445e-01	k: 221021	n:1350000
KS ci ratio: 1.246661e-01	ci left: 6.862205e-04	ci right 7.781655e-04	k: 987	n:1350000
LCTL   1350000 perm   1054 sec   (1280 perm/sec)   p_kst 7.311111e-04   p_cons 1.637193e-01   p_joint 9.029630e-04

Joint ci ratio: 1.114949e-01	ci left: 8.574488e-04	ci right 9.594018e-04	k: 1234	n:1360000
Cons ci ratio: 7.596340e-03	ci left: 1.631211e-01	ci right 1.643656e-01	k: 222690	n:1360000
KS ci ratio: 1.239157e-01	ci left: 6.897241e-04	ci right 7.815413e-04	k: 999	n:1360000
LCTL   1360000 perm   1068 sec   (1273 perm/sec)   p_kst 7.345588e-04   p_cons 1.637426e-01   p_joint 9.073529e-04

Joint ci ratio: 1.110909e-01	ci left: 8.575766e-04	ci right 9.591510e-04	k: 1243	n:1370000
Cons ci ratio: 7.568393e-03	ci left: 1.631296e-01	ci right 1.643696e-01	k: 224336	n:1370000
KS ci ratio: 1.234229e-01	ci left: 6.903484e-04	ci right 7.818566e-04	k: 1007	n:1370000
LCTL   1370000 perm   1082 sec   (1266 perm/sec)   p_kst 7.350365e-04   p_cons 1.637489e-01   p_joint 9.072993e-04

Joint ci ratio: 1.104708e-01	ci left: 8.612262e-04	ci right 9.626264e-04	k: 1257	n:1380000
Cons ci ratio: 7.540911e-03	ci left: 1.631322e-01	ci right 1.643677e-01	k: 225974	n:1380000
KS ci ratio: 1.226945e-01	ci left: 6.937739e-04	ci right 7.851541e-04	k: 1019	n:1380000
LCTL   1380000 perm   1096 sec   (1259 perm/sec)   p_kst 7.384058e-04   p_cons 1.637493e-01   p_joint 9.108696e-04

Joint ci ratio: 1.100343e-01	ci left: 8.620262e-04	ci right 9.630936e-04	k: 1267	n:1390000
Cons ci ratio: 7.514122e-03	ci left: 1.631204e-01	ci right 1.643515e-01	k: 227592	n:1390000
KS ci ratio: 1.222162e-01	ci left: 6.943618e-04	ci right 7.854371e-04	k: 1027	n:1390000
LCTL   1390000 perm   1110 sec   (1252 perm/sec)   p_kst 7.388489e-04   p_cons 1.637353e-01   p_joint 9.115108e-04

Joint ci ratio: 1.098182e-01	ci left: 8.593420e-04	ci right 9.598840e-04	k: 1272	n:1400000
Cons ci ratio: 7.487206e-03	ci left: 1.631238e-01	ci right 1.643504e-01	k: 229231	n:1400000
KS ci ratio: 1.219792e-01	ci left: 6.921719e-04	ci right 7.827712e-04	k: 1031	n:1400000
LCTL   1400000 perm   1124 sec   (1245 perm/sec)   p_kst 7.364286e-04   p_cons 1.637364e-01   p_joint 9.085714e-04

Joint ci ratio: 1.095604e-01	ci left: 8.573859e-04	ci right 9.574484e-04	k: 1278	n:1410000
Cons ci ratio: 7.461156e-03	ci left: 1.631059e-01	ci right 1.643281e-01	k: 230840	n:1410000
KS ci ratio: 1.216263e-01	ci left: 6.913886e-04	ci right 7.816046e-04	k: 1037	n:1410000
LCTL   1410000 perm   1138 sec   (1239 perm/sec)   p_kst 7.354610e-04   p_cons 1.637163e-01   p_joint 9.063830e-04

Joint ci ratio: 1.093897e-01	ci left: 8.540877e-04	ci right 9.535999e-04	k: 1282	n:1420000
Cons ci ratio: 7.434516e-03	ci left: 1.631199e-01	ci right 1.643378e-01	k: 232494	n:1420000
KS ci ratio: 1.214511e-01	ci left: 6.885680e-04	ci right 7.782773e-04	k: 1040	n:1420000
LCTL   1420000 perm   1153 sec   (1232 perm/sec)   p_kst 7.323944e-04   p_cons 1.637282e-01   p_joint 9.028169e-04

Joint ci ratio: 1.091349e-01	ci left: 8.521961e-04	ci right 9.512418e-04	k: 1288	n:1430000
Cons ci ratio: 7.408481e-03	ci left: 1.631218e-01	ci right 1.643355e-01	k: 234131	n:1430000
KS ci ratio: 1.211605e-01	ci left: 6.871432e-04	ci right 7.764373e-04	k: 1045	n:1430000
LCTL   1430000 perm   1167 sec   (1226 perm/sec)   p_kst 7.307692e-04   p_cons 1.637280e-01   p_joint 9.006993e-04

Joint ci ratio: 1.086303e-01	ci left: 8.543845e-04	ci right 9.531961e-04	k: 1300	n:1440000
Cons ci ratio: 7.382550e-03	ci left: 1.631300e-01	ci right 1.643394e-01	k: 235777	n:1440000
KS ci ratio: 1.204713e-01	ci left: 6.904530e-04	ci right 7.796304e-04	k: 1057	n:1440000
LCTL   1440000 perm   1181 sec   (1219 perm/sec)   p_kst 7.340278e-04   p_cons 1.637340e-01   p_joint 9.027778e-04

Joint ci ratio: 1.081739e-01	ci left: 8.558728e-04	ci right 9.544141e-04	k: 1311	n:1450000
Cons ci ratio: 7.357611e-03	ci left: 1.631112e-01	ci right 1.643164e-01	k: 237384	n:1450000
KS ci ratio: 1.199620e-01	ci left: 6.917115e-04	ci right 7.806471e-04	k: 1066	n:1450000
LCTL   1450000 perm   1195 sec   (1213 perm/sec)   p_kst 7.351724e-04   p_cons 1.637131e-01   p_joint 9.041379e-04

Joint ci ratio: 1.076824e-01	ci left: 8.580080e-04	ci right 9.563179e-04	k: 1323	n:1460000
Cons ci ratio: 7.332923e-03	ci left: 1.630926e-01	ci right 1.642936e-01	k: 238991	n:1460000
KS ci ratio: 1.193483e-01	ci left: 6.942825e-04	ci right 7.830597e-04	k: 1077	n:1460000
LCTL   1460000 perm   1210 sec   (1207 perm/sec)   p_kst 7.376712e-04   p_cons 1.636925e-01   p_joint 9.061644e-04

Joint ci ratio: 1.073183e-01	ci left: 8.581290e-04	ci right 9.560994e-04	k: 1332	n:1470000
Cons ci ratio: 7.307229e-03	ci left: 1.631212e-01	ci right 1.643182e-01	k: 240667	n:1470000
KS ci ratio: 1.189627e-01	ci left: 6.941795e-04	ci right 7.826366e-04	k: 1084	n:1470000
LCTL   1470000 perm   1225 sec   (1200 perm/sec)   p_kst 7.374150e-04   p_cons 1.637190e-01   p_joint 9.061224e-04

Joint ci ratio: 1.136850e-01	ci left: 7.570612e-04	ci right 8.489645e-04	k: 1187	n:1480000
Cons ci ratio: 7.283547e-03	ci left: 1.630840e-01	ci right 1.642768e-01	k: 242246	n:1480000
KS ci ratio: 1.185265e-01	ci left: 6.947340e-04	ci right 7.829144e-04	k: 1092	n:1480000
LCTL   1480000 perm   1240 sec   (1194 perm/sec)   p_kst 7.378378e-04   p_cons 1.636797e-01   p_joint 8.020270e-04

Joint ci ratio: 1.065615e-01	ci left: 8.590212e-04	ci right 9.563584e-04	k: 1351	n:1490000
Cons ci ratio: 7.259986e-03	ci left: 1.630513e-01	ci right 1.642400e-01	k: 243831	n:1490000
KS ci ratio: 1.181488e-01	ci left: 6.946303e-04	ci right 7.824969e-04	k: 1099	n:1490000
LCTL   1490000 perm   1254 sec   (1188 perm/sec)   p_kst 7.375839e-04   p_cons 1.636450e-01   p_joint 9.067114e-04

Joint ci ratio: 1.062477e-01	ci left: 8.584858e-04	ci right 9.554579e-04	k: 1359	n:1500000
Cons ci ratio: 7.236441e-03	ci left: 1.630270e-01	ci right 1.642116e-01	k: 245428	n:1500000
KS ci ratio: 1.178813e-01	ci left: 6.932343e-04	ci right 7.807120e-04	k: 1104	n:1500000
LCTL   1500000 perm   1269 sec   (1182 perm/sec)   p_kst 7.360000e-04   p_cons 1.636187e-01   p_joint 9.060000e-04

Joint ci ratio: 1.059754e-01	ci left: 8.573131e-04	ci right 9.538892e-04	k: 1366	n:1510000
Cons ci ratio: 7.212583e-03	ci left: 1.630235e-01	ci right 1.642042e-01	k: 247056	n:1510000
KS ci ratio: 1.175626e-01	ci left: 6.924998e-04	ci right 7.796322e-04	k: 1110	n:1510000
LCTL   1510000 perm   1284 sec   (1176 perm/sec)   p_kst 7.350993e-04   p_cons 1.636132e-01   p_joint 9.046358e-04

Joint ci ratio: 1.055898e-01	ci left: 8.580778e-04	ci right 9.543665e-04	k: 1376	n:1520000
Cons ci ratio: 7.188889e-03	ci left: 1.630228e-01	ci right 1.641996e-01	k: 248688	n:1520000
KS ci ratio: 1.171415e-01	ci left: 6.930526e-04	ci right 7.799206e-04	k: 1118	n:1520000
LCTL   1520000 perm   1300 sec   (1169 perm/sec)   p_kst 7.355263e-04   p_cons 1.636105e-01   p_joint 9.052632e-04

Joint ci ratio: 1.052085e-01	ci left: 8.588331e-04	ci right 9.548370e-04	k: 1386	n:1530000
Cons ci ratio: 7.165907e-03	ci left: 1.630037e-01	ci right 1.641766e-01	k: 250292	n:1530000
KS ci ratio: 1.166732e-01	ci left: 6.942332e-04	ci right 7.808773e-04	k: 1127	n:1530000
LCTL   1530000 perm   1315 sec   (1164 perm/sec)   p_kst 7.366013e-04   p_cons 1.635895e-01   p_joint 9.058824e-04

Joint ci ratio: 1.047187e-01	ci left: 8.614763e-04	ci right 9.572997e-04	k: 1399	n:1540000
Cons ci ratio: 7.142415e-03	ci left: 1.630128e-01	ci right 1.641819e-01	k: 251939	n:1540000
KS ci ratio: 1.161083e-01	ci left: 6.966601e-04	ci right 7.831573e-04	k: 1138	n:1540000
LCTL   1540000 perm   1330 sec   (1158 perm/sec)   p_kst 7.389610e-04   p_cons 1.635968e-01   p_joint 9.084416e-04

Joint ci ratio: 1.043838e-01	ci left: 8.615730e-04	ci right 9.570818e-04	k: 1408	n:1550000
Cons ci ratio: 7.120261e-03	ci left: 1.629793e-01	ci right 1.641445e-01	k: 253520	n:1550000
KS ci ratio: 1.158544e-01	ci left: 6.952978e-04	ci right 7.814241e-04	k: 1143	n:1550000
LCTL   1550000 perm   1346 sec   (1152 perm/sec)   p_kst 7.374194e-04   p_cons 1.635613e-01   p_joint 9.083871e-04

Joint ci ratio: 1.040887e-01	ci left: 8.610446e-04	ci right 9.562086e-04	k: 1416	n:1560000
Cons ci ratio: 7.097180e-03	ci left: 1.629897e-01	ci right 1.641512e-01	k: 255169	n:1560000
KS ci ratio: 1.155016e-01	ci left: 6.951981e-04	ci right 7.810319e-04	k: 1150	n:1560000
LCTL   1560000 perm   1361 sec   (1146 perm/sec)   p_kst 7.371795e-04   p_cons 1.635699e-01   p_joint 9.076923e-04

Joint ci ratio: 1.039057e-01	ci left: 8.586621e-04	ci right 9.533857e-04	k: 1421	n:1570000
Cons ci ratio: 7.074866e-03	ci left: 1.629791e-01	ci right 1.641368e-01	k: 256785	n:1570000
KS ci ratio: 1.152516e-01	ci left: 6.938628e-04	ci right 7.793338e-04	k: 1155	n:1570000
LCTL   1570000 perm   1377 sec   (1140 perm/sec)   p_kst 7.356688e-04   p_cons 1.635573e-01   p_joint 9.050955e-04

Joint ci ratio: 1.037236e-01	ci left: 8.563098e-04	ci right 9.505983e-04	k: 1426	n:1580000
Cons ci ratio: 7.052696e-03	ci left: 1.629711e-01	ci right 1.641251e-01	k: 258405	n:1580000
KS ci ratio: 1.151025e-01	ci left: 6.913153e-04	ci right 7.763548e-04	k: 1158	n:1580000
LCTL   1580000 perm   1392 sec   (1135 perm/sec)   p_kst 7.329114e-04   p_cons 1.635475e-01   p_joint 9.025316e-04

Joint ci ratio: 1.032902e-01	ci left: 8.582761e-04	ci right 9.523621e-04	k: 1438	n:1590000
Cons ci ratio: 7.030151e-03	ci left: 1.629858e-01	ci right 1.641362e-01	k: 260061	n:1590000
KS ci ratio: 1.146091e-01	ci left: 6.930760e-04	ci right 7.779419e-04	k: 1168	n:1590000
LCTL   1590000 perm   1409 sec   (1129 perm/sec)   p_kst 7.345912e-04   p_cons 1.635604e-01   p_joint 9.044025e-04

Joint ci ratio: 1.047205e-01	ci left: 8.291702e-04	ci right 9.214018e-04	k: 1399	n:1600000
Cons ci ratio: 7.007981e-03	ci left: 1.629940e-01	ci right 1.641409e-01	k: 261707	n:1600000
KS ci ratio: 1.139769e-01	ci left: 6.966371e-04	ci right 7.814369e-04	k: 1181	n:1600000
LCTL   1600000 perm   1425 sec   (1123 perm/sec)   p_kst 7.381250e-04   p_cons 1.635669e-01   p_joint 8.743750e-04

Joint ci ratio: 1.043115e-01	ci left: 8.306738e-04	ci right 9.226896e-04	k: 1410	n:1610000
Cons ci ratio: 6.986321e-03	ci left: 1.629904e-01	ci right 1.641337e-01	k: 263334	n:1610000
KS ci ratio: 1.134977e-01	ci left: 6.983447e-04	ci right 7.829710e-04	k: 1191	n:1610000
LCTL   1610000 perm   1441 sec   (1117 perm/sec)   p_kst 7.397516e-04   p_cons 1.635615e-01   p_joint 8.757764e-04

Joint ci ratio: 1.042378e-01	ci left: 8.267485e-04	ci right 9.182609e-04	k: 1412	n:1620000
Cons ci ratio: 6.965348e-03	ci left: 1.629678e-01	ci right 1.641075e-01	k: 264930	n:1620000
KS ci ratio: 1.134028e-01	ci left: 6.952334e-04	ci right 7.794075e-04	k: 1193	n:1620000
LCTL   1620000 perm   1457 sec   (1112 perm/sec)   p_kst 7.364198e-04   p_cons 1.635370e-01   p_joint 8.716049e-04

Joint ci ratio: 1.020565e-01	ci left: 8.581351e-04	ci right 9.510149e-04	k: 1473	n:1630000
Cons ci ratio: 6.944640e-03	ci left: 1.629424e-01	ci right 1.640785e-01	k: 266521	n:1630000
KS ci ratio: 1.131190e-01	ci left: 6.945449e-04	ci right 7.784111e-04	k: 1199	n:1630000
LCTL   1630000 perm   1473 sec   (1106 perm/sec)   p_kst 7.355828e-04   p_cons 1.635098e-01   p_joint 9.036810e-04

Joint ci ratio: 1.017464e-01	ci left: 8.582505e-04	ci right 9.508436e-04	k: 1482	n:1640000
Cons ci ratio: 6.923915e-03	ci left: 1.629252e-01	ci right 1.640577e-01	k: 268125	n:1640000
KS ci ratio: 1.127437e-01	ci left: 6.950501e-04	ci right 7.786805e-04	k: 1207	n:1640000
LCTL   1640000 perm   1490 sec   (1101 perm/sec)   p_kst 7.359756e-04   p_cons 1.634909e-01   p_joint 9.036585e-04

Joint ci ratio: 1.033638e-01	ci left: 8.258845e-04	ci right 9.164882e-04	k: 1436	n:1650000
Cons ci ratio: 6.903665e-03	ci left: 1.628967e-01	ci right 1.640257e-01	k: 269710	n:1650000
KS ci ratio: 1.124648e-01	ci left: 6.943716e-04	ci right 7.776999e-04	k: 1213	n:1650000
LCTL   1650000 perm   1507 sec   (1095 perm/sec)   p_kst 7.351515e-04   p_cons 1.634606e-01   p_joint 8.703030e-04

Joint ci ratio: 1.030416e-01	ci left: 8.261911e-04	ci right 9.165287e-04	k: 1445	n:1660000
Cons ci ratio: 6.884153e-03	ci left: 1.628463e-01	ci right 1.639718e-01	k: 271258	n:1660000
KS ci ratio: 1.121420e-01	ci left: 6.942871e-04	ci right 7.773503e-04	k: 1220	n:1660000
LCTL   1660000 perm   1523 sec   (1090 perm/sec)   p_kst 7.349398e-04   p_cons 1.634084e-01   p_joint 8.704819e-04

Joint ci ratio: 1.026518e-01	ci left: 8.276613e-04	ci right 9.177967e-04	k: 1456	n:1670000
Cons ci ratio: 6.863978e-03	ci left: 1.628294e-01	ci right 1.639514e-01	k: 272861	n:1670000
KS ci ratio: 1.117764e-01	ci left: 6.947859e-04	ci right 7.776200e-04	k: 1228	n:1670000
LCTL   1670000 perm   1541 sec   (1084 perm/sec)   p_kst 7.353293e-04   p_cons 1.633898e-01   p_joint 8.718563e-04

Joint ci ratio: 1.023712e-01	ci left: 8.273745e-04	ci right 9.172176e-04	k: 1464	n:1680000
Cons ci ratio: 6.842013e-03	ci left: 1.628911e-01	ci right 1.640100e-01	k: 274596	n:1680000
KS ci ratio: 1.115046e-01	ci left: 6.941220e-04	ci right 7.766624e-04	k: 1234	n:1680000
LCTL   1680000 perm   1558 sec   (1078 perm/sec)   p_kst 7.345238e-04   p_cons 1.634500e-01   p_joint 8.714286e-04

Joint ci ratio: 1.022318e-01	ci left: 8.247851e-04	ci right 9.142177e-04	k: 1468	n:1690000
Cons ci ratio: 6.821748e-03	ci left: 1.628925e-01	ci right 1.640081e-01	k: 276230	n:1690000
KS ci ratio: 1.113696e-01	ci left: 6.917404e-04	ci right 7.738914e-04	k: 1237	n:1690000
LCTL   1690000 perm   1576 sec   (1073 perm/sec)   p_kst 7.319527e-04   p_cons 1.634497e-01   p_joint 8.686391e-04

Joint ci ratio: 1.019892e-01	ci left: 8.239459e-04	ci right 9.130628e-04	k: 1475	n:1700000
Cons ci ratio: 6.802291e-03	ci left: 1.628686e-01	ci right 1.639808e-01	k: 277821	n:1700000
KS ci ratio: 1.110560e-01	ci left: 6.916744e-04	ci right 7.735713e-04	k: 1244	n:1700000
LCTL   1700000 perm   1593 sec   (1067 perm/sec)   p_kst 7.317647e-04   p_cons 1.634241e-01   p_joint 8.676471e-04

Joint ci ratio: 1.016454e-01	ci left: 8.248265e-04	ci right 9.137200e-04	k: 1485	n:1710000
Cons ci ratio: 6.781636e-03	ci left: 1.628998e-01	ci right 1.640089e-01	k: 279506	n:1710000
KS ci ratio: 1.107009e-01	ci left: 6.921782e-04	ci right 7.738555e-04	k: 1252	n:1710000
LCTL   1710000 perm   1610 sec   (1062 perm/sec)   p_kst 7.321637e-04   p_cons 1.634538e-01   p_joint 8.684211e-04

Joint ci ratio: 1.013390e-01	ci left: 8.251308e-04	ci right 9.137730e-04	k: 1494	n:1720000
Cons ci ratio: 6.761513e-03	ci left: 1.629168e-01	ci right 1.640227e-01	k: 281167	n:1720000
KS ci ratio: 1.103054e-01	ci left: 6.932418e-04	ci right 7.747335e-04	k: 1261	n:1720000
LCTL   1720000 perm   1627 sec   (1057 perm/sec)   p_kst 7.331395e-04   p_cons 1.634692e-01   p_joint 8.686047e-04

Joint ci ratio: 1.010689e-01	ci left: 8.248684e-04	ci right 9.132324e-04	k: 1502	n:1730000
Cons ci ratio: 6.741639e-03	ci left: 1.629307e-01	ci right 1.640334e-01	k: 282823	n:1730000
KS ci ratio: 1.100008e-01	ci left: 6.931694e-04	ci right 7.744129e-04	k: 1268	n:1730000
LCTL   1730000 perm   1644 sec   (1052 perm/sec)   p_kst 7.329480e-04   p_cons 1.634815e-01   p_joint 8.682081e-04

Joint ci ratio: 1.006013e-01	ci left: 8.279710e-04	ci right 9.162327e-04	k: 1516	n:1740000
Cons ci ratio: 6.721953e-03	ci left: 1.629439e-01	ci right 1.640434e-01	k: 284478	n:1740000
KS ci ratio: 1.095270e-01	ci left: 6.953340e-04	ci right 7.764575e-04	k: 1279	n:1740000
LCTL   1740000 perm   1661 sec   (1048 perm/sec)   p_kst 7.350575e-04   p_cons 1.634931e-01   p_joint 8.712644e-04

Joint ci ratio: 1.004361e-01	ci left: 8.260250e-04	ci right 9.139260e-04	k: 1521	n:1750000
Cons ci ratio: 6.702271e-03	ci left: 1.629638e-01	ci right 1.640602e-01	k: 286145	n:1750000
KS ci ratio: 1.093564e-01	ci left: 6.935838e-04	ci right 7.743689e-04	k: 1283	n:1750000
LCTL   1750000 perm   1678 sec   (1043 perm/sec)   p_kst 7.331429e-04   p_cons 1.635114e-01   p_joint 8.691429e-04

Joint ci ratio: 1.001404e-01	ci left: 8.263170e-04	ci right 9.139751e-04	k: 1530	n:1760000
Cons ci ratio: 6.683788e-03	ci left: 1.629414e-01	ci right 1.640347e-01	k: 287738	n:1760000
KS ci ratio: 1.090595e-01	ci left: 6.935116e-04	ci right 7.740550e-04	k: 1290	n:1760000
LCTL   1760000 perm   1695 sec   (1038 perm/sec)   p_kst 7.329545e-04   p_cons 1.634875e-01   p_joint 8.693182e-04

Joint ci ratio: 9.987982e-02	ci left: 8.260553e-04	ci right 9.134442e-04	k: 1538	n:1770000
Cons ci ratio: 6.664466e-03	ci left: 1.629600e-01	ci right 1.640502e-01	k: 289403	n:1770000
KS ci ratio: 1.088070e-01	ci left: 6.928909e-04	ci right 7.731640e-04	k: 1296	n:1770000
LCTL   1770000 perm   1712 sec   (1034 perm/sec)   p_kst 7.322034e-04   p_cons 1.635045e-01   p_joint 8.689266e-04

Joint ci ratio: 9.965349e-02	ci left: 8.252490e-04	ci right 9.123432e-04	k: 1545	n:1780000
Cons ci ratio: 6.644820e-03	ci left: 1.629985e-01	ci right 1.640857e-01	k: 291104	n:1780000
KS ci ratio: 1.085146e-01	ci left: 6.928240e-04	ci right 7.728598e-04	k: 1303	n:1780000
LCTL   1780000 perm   1730 sec   (1029 perm/sec)   p_kst 7.320225e-04   p_cons 1.635416e-01   p_joint 8.679775e-04

Joint ci ratio: 9.933272e-02	ci left: 8.260862e-04	ci right 9.129719e-04	k: 1555	n:1790000
Cons ci ratio: 6.626049e-03	ci left: 1.630076e-01	ci right 1.640918e-01	k: 292753	n:1790000
KS ci ratio: 1.081008e-01	ci left: 6.943888e-04	ci right 7.742799e-04	k: 1313	n:1790000
LCTL   1790000 perm   1747 sec   (1024 perm/sec)   p_kst 7.335196e-04   p_cons 1.635492e-01   p_joint 8.687151e-04

Joint ci ratio: 9.895179e-02	ci left: 8.279983e-04	ci right 9.147317e-04	k: 1567	n:1800000
Cons ci ratio: 6.606216e-03	ci left: 1.630671e-01	ci right 1.641484e-01	k: 294493	n:1800000
KS ci ratio: 1.077732e-01	ci left: 6.948555e-04	ci right 7.745428e-04	k: 1321	n:1800000
LCTL   1800000 perm   1765 sec   (1020 perm/sec)   p_kst 7.338889e-04   p_cons 1.636072e-01   p_joint 8.705556e-04

Joint ci ratio: 9.857522e-02	ci left: 8.298898e-04	ci right 9.164714e-04	k: 1579	n:1810000
Cons ci ratio: 6.587384e-03	ci left: 1.630917e-01	ci right 1.641701e-01	k: 296171	n:1810000
KS ci ratio: 1.072872e-01	ci left: 6.974681e-04	ci right 7.770715e-04	k: 1333	n:1810000
LCTL   1810000 perm   1782 sec   (1015 perm/sec)   p_kst 7.364641e-04   p_cons 1.636304e-01   p_joint 8.723757e-04

Joint ci ratio: 9.829566e-02	ci left: 8.301533e-04	ci right 9.165026e-04	k: 1588	n:1820000
Cons ci ratio: 6.569332e-03	ci left: 1.630903e-01	ci right 1.641657e-01	k: 297802	n:1820000
KS ci ratio: 1.070068e-01	ci left: 6.973789e-04	ci right 7.767511e-04	k: 1340	n:1820000
LCTL   1820000 perm   1800 sec   (1011 perm/sec)   p_kst 7.362637e-04   p_cons 1.636275e-01   p_joint 8.725275e-04

Joint ci ratio: 9.811067e-02	ci left: 8.288151e-04	ci right 9.148536e-04	k: 1594	n:1830000
Cons ci ratio: 6.550041e-03	ci left: 1.631467e-01	ci right 1.642194e-01	k: 299539	n:1830000
KS ci ratio: 1.068080e-01	ci left: 6.962273e-04	ci right 7.753119e-04	k: 1345	n:1830000
LCTL   1830000 perm   1818 sec   (1007 perm/sec)   p_kst 7.349727e-04   p_cons 1.636825e-01   p_joint 8.710383e-04

Joint ci ratio: 9.777404e-02	ci left: 8.301425e-04	ci right 9.160062e-04	k: 1605	n:1840000
Cons ci ratio: 6.532319e-03	ci left: 1.631439e-01	ci right 1.642137e-01	k: 301168	n:1840000
KS ci ratio: 1.064526e-01	ci left: 6.972043e-04	ci right 7.761199e-04	k: 1354	n:1840000
LCTL   1840000 perm   1836 sec   (1002 perm/sec)   p_kst 7.358696e-04   p_cons 1.636783e-01   p_joint 8.722826e-04

Joint ci ratio: 9.741071e-02	ci left: 8.319835e-04	ci right 9.176995e-04	k: 1617	n:1850000
Cons ci ratio: 6.514252e-03	ci left: 1.631617e-01	ci right 1.642286e-01	k: 302835	n:1850000
KS ci ratio: 1.060619e-01	ci left: 6.986974e-04	ci right 7.774736e-04	k: 1364	n:1850000
LCTL   1850000 perm   1855 sec   (997 perm/sec)   p_kst 7.372973e-04   p_cons 1.636946e-01   p_joint 8.740541e-04

Joint ci ratio: 9.708120e-02	ci left: 8.332806e-04	ci right 9.188234e-04	k: 1628	n:1860000
Cons ci ratio: 6.497239e-03	ci left: 1.631411e-01	ci right 1.642051e-01	k: 304431	n:1860000
KS ci ratio: 1.056754e-01	ci left: 7.001750e-04	ci right 7.788123e-04	k: 1374	n:1860000
LCTL   1860000 perm   1873 sec   (993 perm/sec)   p_kst 7.387097e-04   p_cons 1.636726e-01   p_joint 8.752688e-04

Joint ci ratio: 9.678456e-02	ci left: 8.340425e-04	ci right 9.193870e-04	k: 1638	n:1870000
Cons ci ratio: 6.479992e-03	ci left: 1.631363e-01	ci right 1.641974e-01	k: 306056	n:1870000
KS ci ratio: 1.054075e-01	ci left: 7.000753e-04	ci right 7.784896e-04	k: 1381	n:1870000
LCTL   1870000 perm   1892 sec   (989 perm/sec)   p_kst 7.385027e-04   p_cons 1.636663e-01   p_joint 8.759358e-04

Joint ci ratio: 9.631539e-02	ci left: 8.379114e-04	ci right 9.232127e-04	k: 1654	n:1880000
Cons ci ratio: 6.462254e-03	ci left: 1.631581e-01	ci right 1.642164e-01	k: 307731	n:1880000
KS ci ratio: 1.049150e-01	ci left: 7.030845e-04	ci right 7.814453e-04	k: 1394	n:1880000
LCTL   1880000 perm   1910 sec   (984 perm/sec)   p_kst 7.414894e-04   p_cons 1.636867e-01   p_joint 8.797872e-04

Joint ci ratio: 9.605457e-02	ci left: 8.381253e-04	ci right 9.232044e-04	k: 1663	n:1890000
Cons ci ratio: 6.444735e-03	ci left: 1.631764e-01	ci right 1.642320e-01	k: 309400	n:1890000
KS ci ratio: 1.045782e-01	ci left: 7.040017e-04	ci right 7.821973e-04	k: 1403	n:1890000
LCTL   1890000 perm   1929 sec   (980 perm/sec)   p_kst 7.423280e-04   p_cons 1.637037e-01   p_joint 8.798942e-04

Joint ci ratio: 1.022716e-01	ci left: 7.331100e-04	ci right 8.126349e-04	k: 1467	n:1900000
Cons ci ratio: 6.427185e-03	ci left: 1.632020e-01	ci right 1.642548e-01	k: 311083	n:1900000
KS ci ratio: 1.042445e-01	ci left: 7.049096e-04	ci right 7.829409e-04	k: 1412	n:1900000
LCTL   1900000 perm   1949 sec   (975 perm/sec)   p_kst 7.431579e-04   p_cons 1.637279e-01   p_joint 7.721053e-04

Joint ci ratio: 1.020633e-01	ci left: 7.323328e-04	ci right 8.116019e-04	k: 1473	n:1910000
Cons ci ratio: 6.410991e-03	ci left: 1.631755e-01	ci right 1.642255e-01	k: 312667	n:1910000
KS ci ratio: 1.040240e-01	ci left: 7.042785e-04	ci right 7.820649e-04	k: 1418	n:1910000
LCTL   1910000 perm   1968 sec   (971 perm/sec)   p_kst 7.424084e-04   p_cons 1.637000e-01   p_joint 7.712042e-04

Joint ci ratio: 1.017531e-01	ci left: 7.330866e-04	ci right 8.121817e-04	k: 1482	n:1920000
Cons ci ratio: 6.394651e-03	ci left: 1.631608e-01	ci right 1.642080e-01	k: 314273	n:1920000
KS ci ratio: 1.036956e-01	ci left: 7.051761e-04	ci right 7.828009e-04	k: 1427	n:1920000
LCTL   1920000 perm   1987 sec   (966 perm/sec)   p_kst 7.432292e-04   p_cons 1.636839e-01   p_joint 7.718750e-04

Joint ci ratio: 1.015138e-01	ci left: 7.328230e-04	ci right 8.116926e-04	k: 1489	n:1930000
Cons ci ratio: 6.378327e-03	ci left: 1.631508e-01	ci right 1.641953e-01	k: 315888	n:1930000
KS ci ratio: 1.034424e-01	ci left: 7.050554e-04	ci right 7.824658e-04	k: 1434	n:1930000
LCTL   1930000 perm   2007 sec   (962 perm/sec)   p_kst 7.430052e-04   p_cons 1.636725e-01   p_joint 7.715026e-04

Joint ci ratio: 1.013101e-01	ci left: 7.320599e-04	ci right 8.106799e-04	k: 1495	n:1940000
Cons ci ratio: 6.361936e-03	ci left: 1.631492e-01	ci right 1.641910e-01	k: 317519	n:1940000
KS ci ratio: 1.032268e-01	ci left: 7.044339e-04	ci right 7.816051e-04	k: 1440	n:1940000
LCTL   1940000 perm   2026 sec   (958 perm/sec)   p_kst 7.422680e-04   p_cons 1.636696e-01   p_joint 7.706186e-04

Joint ci ratio: 1.010403e-01	ci left: 7.323045e-04	ci right 8.107289e-04	k: 1503	n:1950000
Cons ci ratio: 6.345991e-03	ci left: 1.631338e-01	ci right 1.641728e-01	k: 319123	n:1950000
KS ci ratio: 1.029415e-01	ci left: 7.048182e-04	ci right 7.818052e-04	k: 1448	n:1950000
LCTL   1950000 perm   2045 sec   (953 perm/sec)   p_kst 7.425641e-04   p_cons 1.636528e-01   p_joint 7.707692e-04

Joint ci ratio: 1.008728e-01	ci left: 7.310548e-04	ci right 8.092079e-04	k: 1508	n:1960000
Cons ci ratio: 6.330200e-03	ci left: 1.631170e-01	ci right 1.641534e-01	k: 320724	n:1960000
KS ci ratio: 1.027998e-01	ci left: 7.032105e-04	ci right 7.799097e-04	k: 1452	n:1960000
LCTL   1960000 perm   2065 sec   (949 perm/sec)   p_kst 7.408163e-04   p_cons 1.636347e-01   p_joint 7.693878e-04

Joint ci ratio: 1.004740e-01	ci left: 7.332819e-04	ci right 8.113449e-04	k: 1520	n:1970000
Cons ci ratio: 6.313579e-03	ci left: 1.631415e-01	ci right 1.641752e-01	k: 322406	n:1970000
KS ci ratio: 1.023778e-01	ci left: 7.055760e-04	ci right 7.821984e-04	k: 1464	n:1970000
LCTL   1970000 perm   2085 sec   (945 perm/sec)   p_kst 7.431472e-04   p_cons 1.636579e-01   p_joint 7.715736e-04

Joint ci ratio: 1.002108e-01	ci left: 7.335175e-04	ci right 8.113890e-04	k: 1528	n:1980000
Cons ci ratio: 6.296867e-03	ci left: 1.631753e-01	ci right 1.642065e-01	k: 324107	n:1980000
KS ci ratio: 1.021341e-01	ci left: 7.054574e-04	ci right 7.818736e-04	k: 1471	n:1980000
LCTL   1980000 perm   2104 sec   (941 perm/sec)   p_kst 7.429293e-04   p_cons 1.636904e-01   p_joint 7.717172e-04

Joint ci ratio: 9.998220e-02	ci left: 7.332610e-04	ci right 8.109173e-04	k: 1535	n:1990000
Cons ci ratio: 6.280691e-03	ci left: 1.631912e-01	ci right 1.642198e-01	k: 325773	n:1990000
KS ci ratio: 1.018921e-01	ci left: 7.053403e-04	ci right 7.815519e-04	k: 1478	n:1990000
LCTL   1990000 perm   2124 sec   (937 perm/sec)   p_kst 7.427136e-04   p_cons 1.637050e-01   p_joint 7.713568e-04

Joint ci ratio: 9.978753e-02	ci left: 7.325197e-04	ci right 8.099376e-04	k: 1541	n:2000000
Cons ci ratio: 6.264615e-03	ci left: 1.632079e-01	ci right 1.642341e-01	k: 327441	n:2000000
KS ci ratio: 1.016861e-01	ci left: 7.047372e-04	ci right 7.807205e-04	k: 1484	n:2000000
LCTL   2000000 perm   2143 sec   (933 perm/sec)   p_kst 7.420000e-04   p_cons 1.637205e-01   p_joint 7.705000e-04

Joint ci ratio: 9.956182e-02	ci left: 7.322711e-04	ci right 8.094775e-04	k: 1548	n:2010000
Cons ci ratio: 6.248946e-03	ci left: 1.632121e-01	ci right 1.642357e-01	k: 329084	n:2010000
KS ci ratio: 1.014473e-01	ci left: 7.046251e-04	ci right 7.804073e-04	k: 1491	n:2010000
LCTL   2010000 perm   2165 sec   (928 perm/sec)   p_kst 7.417910e-04   p_cons 1.637234e-01   p_joint 7.701493e-04

Joint ci ratio: 9.943361e-02	ci left: 7.305769e-04	ci right 8.074996e-04	k: 1552	n:2020000
Cons ci ratio: 6.233181e-03	ci left: 1.632256e-01	ci right 1.642467e-01	k: 330746	n:2020000
KS ci ratio: 1.013116e-01	ci left: 7.030669e-04	ci right 7.785744e-04	k: 1495	n:2020000
LCTL   2020000 perm   2185 sec   (924 perm/sec)   p_kst 7.400990e-04   p_cons 1.637356e-01   p_joint 7.683168e-04

Joint ci ratio: 9.933783e-02	ci left: 7.284191e-04	ci right 8.050364e-04	k: 1555	n:2030000
Cons ci ratio: 6.218059e-03	ci left: 1.632158e-01	ci right 1.642344e-01	k: 332361	n:2030000
KS ci ratio: 1.012441e-01	ci left: 7.005637e-04	ci right 7.757492e-04	k: 1497	n:2030000
LCTL   2030000 perm   2206 sec   (920 perm/sec)   p_kst 7.374384e-04   p_cons 1.637246e-01   p_joint 7.660099e-04

Joint ci ratio: 9.914689e-02	ci left: 7.277165e-04	ci right 8.041043e-04	k: 1561	n:2040000
Cons ci ratio: 6.204436e-03	ci left: 1.631450e-01	ci right 1.641609e-01	k: 333851	n:2040000
KS ci ratio: 1.010420e-01	ci left: 6.999963e-04	ci right 7.749621e-04	k: 1503	n:2040000
LCTL   2040000 perm   2226 sec   (917 perm/sec)   p_kst 7.367647e-04   p_cons 1.636525e-01   p_joint 7.651961e-04

Joint ci ratio: 9.895706e-02	ci left: 7.270210e-04	ci right 8.031812e-04	k: 1567	n:2050000
Cons ci ratio: 6.188904e-03	ci left: 1.631630e-01	ci right 1.641764e-01	k: 335522	n:2050000
KS ci ratio: 1.008411e-01	ci left: 6.994346e-04	ci right 7.741825e-04	k: 1509	n:2050000
LCTL   2050000 perm   2246 sec   (913 perm/sec)   p_kst 7.360976e-04   p_cons 1.636693e-01   p_joint 7.643902e-04

Joint ci ratio: 9.870557e-02	ci left: 7.272793e-04	ci right 8.032617e-04	k: 1575	n:2060000
Cons ci ratio: 6.173128e-03	ci left: 1.631969e-01	ci right 1.642079e-01	k: 337226	n:2060000
KS ci ratio: 1.005750e-01	ci left: 6.998250e-04	ci right 7.744056e-04	k: 1517	n:2060000
LCTL   2060000 perm   2266 sec   (909 perm/sec)   p_kst 7.364078e-04   p_cons 1.637019e-01   p_joint 7.645631e-04

Joint ci ratio: 9.851825e-02	ci left: 7.265929e-04	ci right 8.023512e-04	k: 1581	n:2070000
Cons ci ratio: 6.158677e-03	ci left: 1.631769e-01	ci right 1.641854e-01	k: 338819	n:2070000
KS ci ratio: 1.003768e-01	ci left: 6.992699e-04	ci right 7.736359e-04	k: 1523	n:2070000
LCTL   2070000 perm   2286 sec   (905 perm/sec)   p_kst 7.357488e-04   p_cons 1.636807e-01   p_joint 7.637681e-04

Joint ci ratio: 9.845617e-02	ci left: 7.240375e-04	ci right 7.994790e-04	k: 1583	n:2080000
Cons ci ratio: 6.144683e-03	ci left: 1.631412e-01	ci right 1.641472e-01	k: 340379	n:2080000
KS ci ratio: 1.003112e-01	ci left: 6.968454e-04	ci right 7.709022e-04	k: 1525	n:2080000
LCTL   2080000 perm   2306 sec   (902 perm/sec)   p_kst 7.331731e-04   p_cons 1.636438e-01   p_joint 7.610577e-04

Joint ci ratio: 9.817762e-02	ci left: 7.247736e-04	ci right 8.000658e-04	k: 1592	n:2090000
Cons ci ratio: 6.130560e-03	ci left: 1.631159e-01	ci right 1.641195e-01	k: 341960	n:2090000
KS ci ratio: 1.000493e-01	ci left: 6.972431e-04	ci right 7.711373e-04	k: 1533	n:2090000
LCTL   2090000 perm   2327 sec   (898 perm/sec)   p_kst 7.334928e-04   p_cons 1.636172e-01   p_joint 7.617225e-04

Joint ci ratio: 9.784032e-02	ci left: 7.264320e-04	ci right 8.016224e-04	k: 1603	n:2100000
Cons ci ratio: 6.115745e-03	ci left: 1.631261e-01	ci right 1.641272e-01	k: 343615	n:2100000
KS ci ratio: 9.969237e-02	ci left: 6.990302e-04	ci right 7.728341e-04	k: 1544	n:2100000
LCTL   2100000 perm   2347 sec   (895 perm/sec)   p_kst 7.352381e-04   p_cons 1.636262e-01   p_joint 7.633333e-04

Outputting figure to mutsig2_images.part000000000096/LCTL.2_1756_2100000_0.00073524_0.16363_0.00076333.png
                gene_name: LCTL
               theta_stop: 0.100 
                    nperm: 2100000 
                     p_ks: 0.00074 
        ci_ks_bounds_left: 0.00070 
       ci_ks_bounds_right: 0.00077 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.00076 
     ci_joint_bounds_left: 0.00073 
    ci_joint_bounds_right: 0.00080 

Current progress: 50 percent done.
LHX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.983124e-01	ci left: 3.386163e-02	ci right 4.141078e-02	k: 375	n:10000
Cons ci ratio: 2.878995e-01	ci left: 1.557819e-02	ci right 2.090773e-02	k: 181	n:10000
KS ci ratio: 4.188009e-02	ci left: 4.570825e-01	ci right 4.767368e-01	k: 4669	n:10000
LHX3   10000 perm   2 sec   (6432 perm/sec)   p_kst 4.669000e-01   p_cons 1.810000e-02   p_joint 3.750000e-02

Joint ci ratio: 1.348270e-01	ci left: 3.780997e-02	ci right 4.332462e-02	k: 810	n:20000
Cons ci ratio: 1.975832e-01	ci left: 1.739087e-02	ci right 2.125067e-02	k: 385	n:20000
KS ci ratio: 2.920590e-02	ci left: 4.669092e-01	ci right 4.807984e-01	k: 9477	n:20000
LHX3   20000 perm   4 sec   (5621 perm/sec)   p_kst 4.738500e-01   p_cons 1.925000e-02   p_joint 4.050000e-02

Joint ci ratio: 1.099219e-01	ci left: 3.842706e-02	ci right 4.292912e-02	k: 1219	n:30000
Cons ci ratio: 1.603418e-01	ci left: 1.796530e-02	ci right 2.112871e-02	k: 585	n:30000
KS ci ratio: 2.375251e-02	ci left: 4.701679e-01	ci right 4.815034e-01	k: 14275	n:30000
LHX3   30000 perm   6 sec   (5314 perm/sec)   p_kst 4.758333e-01   p_cons 1.950000e-02   p_joint 4.063333e-02

Joint ci ratio: 1.335801e-01	ci left: 1.966558e-02	ci right 2.250455e-02	k: 842	n:40000
Cons ci ratio: 1.152152e-01	ci left: 2.650232e-02	ci right 2.976666e-02	k: 1124	n:40000
KS ci ratio: 2.060805e-02	ci left: 4.700207e-01	ci right 4.798329e-01	k: 18997	n:40000
LHX3   40000 perm   8 sec   (5109 perm/sec)   p_kst 4.749250e-01   p_cons 2.810000e-02   p_joint 2.105000e-02

Joint ci ratio: 1.180972e-01	ci left: 2.028534e-02	ci right 2.285063e-02	k: 1077	n:50000
Cons ci ratio: 1.025744e-01	ci left: 2.692241e-02	ci right 2.985269e-02	k: 1418	n:50000
KS ci ratio: 1.841500e-02	ci left: 4.710142e-01	ci right 4.797886e-01	k: 23770	n:50000
LHX3   50000 perm   10 sec   (4958 perm/sec)   p_kst 4.754000e-01   p_cons 2.836000e-02   p_joint 2.154000e-02

Joint ci ratio: 1.111280e-01	ci left: 1.918650e-02	ci right 2.146023e-02	k: 1218	n:60000
Cons ci ratio: 9.469573e-02	ci left: 2.645025e-02	ci right 2.909569e-02	k: 1665	n:60000
KS ci ratio: 1.679994e-02	ci left: 4.717136e-01	ci right 4.797221e-01	k: 28543	n:60000
LHX3   60000 perm   12 sec   (4825 perm/sec)   p_kst 4.757167e-01   p_cons 2.775000e-02   p_joint 2.030000e-02

Joint ci ratio: 1.015860e-01	ci left: 1.976946e-02	ci right 2.189909e-02	k: 1457	n:70000
Cons ci ratio: 8.780305e-02	ci left: 2.646877e-02	ci right 2.891345e-02	k: 1937	n:70000
KS ci ratio: 1.555029e-02	ci left: 4.721228e-01	ci right 4.795363e-01	k: 33308	n:70000
LHX3   70000 perm   15 sec   (4667 perm/sec)   p_kst 4.758286e-01   p_cons 2.767143e-02   p_joint 2.081429e-02

Joint ci ratio: 8.571916e-02	ci left: 2.438191e-02	ci right 2.657768e-02	k: 2037	n:80000
Cons ci ratio: 8.203440e-02	ci left: 2.661044e-02	ci right 2.889898e-02	k: 2219	n:80000
KS ci ratio: 1.451262e-02	ci left: 4.735086e-01	ci right 4.804431e-01	k: 38158	n:80000
LHX3   80000 perm   18 sec   (4567 perm/sec)   p_kst 4.769750e-01   p_cons 2.773750e-02   p_joint 2.546250e-02

Outputting figure to mutsig2_images.part000000000096/LHX3.2_1316_80000_0.47697_0.027737_0.025462.png
                gene_name: LHX3
               theta_stop: 0.086 
                    nperm: 80000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.025 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.027 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000096
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 96 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1533>
Subject: Job 9877483: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1533>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000097> was used as the working directory.
Started at Fri Oct  5 22:45:38 2012
Results reported at Fri Oct  5 23:39:00 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000097.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000097.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 97  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000097.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   3397.83 sec.
    Max Memory :      2204 MB
    Max Swap   :      4767 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
97
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 97
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 97: processing genes 8705 - 8795
Calculating significance of each gene.
Using projection method.
8705	LILRA1	1
8706	LILRA2	1
8707	LILRA3	1.136231e-01
8708	LILRA4	7.635050e-03
8709	LILRA5	1
8710	LILRA6	1
8711	LILRB1	1.541075e-02
8712	LILRB2	1
8713	LILRB3	1.425334e-06
8714	LILRB4	1
8715	LILRB5	9.368105e-02
8716	LIM2	1
8717	LIMA1	1
8718	LIMCH1	3.893309e-02
8719	LIMD1	1
8720	LIMD2	1
8721	LIME1	1
8722	LIMK1	1
8723	LIMK2	3.508571e-03
8724	LIMS1	1
8725	LIMS2	1
8726	LIN28A	1
8727	LIN28B	1
8728	LIN37	1
8729	LIN52	1
8730	LIN54	1
8731	LIN7A	1
8732	LIN7B	1
8733	LIN7C	1
8734	LIN9	1
8735	LINGO1	1
In gene LINGO2 the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 1825    n = 1	mu =   6.75e-07
8736	LINGO2	1.558872e-02
8737	LINGO3	1
8738	LINGO4	1
8739	LINS1	1
8740	LIPA	1
8741	LIPC	1
8742	LIPE	1
8743	LIPF	1
8744	LIPG	1
8745	LIPH	1
8746	LIPI	1
8747	LIPJ	1
8748	LIPK	1
8749	LIPN	1
8750	LIPT1	1
8751	LITAF	1
8752	LIX1	1
8753	LIX1L	1
8754	LLGL1	1
8755	LLGL2	1
8756	LLPH	1
8757	LMAN1	1.003441e-01
8758	LMAN1L	1
8759	LMAN2	1
8760	LMAN2L	1
8761	LMBR1	1
8762	LMBR1L	1
8763	LMBRD1	1
8764	LMBRD2	1
8765	LMCD1	1
8766	LMF1	1
8767	LMF2	1.982316e-01
8768	LMLN	1
8769	LMNA	1
8770	LMNB1	1
8771	LMNB2	1
8772	LMO1	1
8773	LMO2	1
8774	LMO3	1
8775	LMO4	1
8776	LMO7	2.839647e-01
8777	LMOD1	1
8778	LMOD2	1
8779	LMOD3	1
8780	LMTK2	1
In gene LMTK3 the following bins exceed PROBCAP:
    PRAD-CH-5794	categ 6	N = 1602    n = 1	mu =   2.02e-07
8781	LMTK3	4.530273e-02
8782	LMX1A	1
8783	LMX1B	1
8784	LNP1	1
8785	LNPEP	1
8786	LNX1	1
8787	LNX2	1
8788	LOC100130932	1
8789	LOC100302652	1
8790	LOC150786	1
8791	LOC153328	1
8792	LOC200726	1
8793	LOC285033	1
8794	LOC286238	1
8795	LOC391322	1
Done

Running MutSig 2:
Scatter job 97: processing genes 8705 - 8795
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
LILRB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.435137e-02	ci left: 2.093488e-01	ci right 2.256161e-01	k: 2174	n:10000
Cons ci ratio: 8.327350e-03	ci left: 9.527344e-01	ci right 9.607967e-01	k: 9569	n:10000
KS ci ratio: 1.323001e-01	ci left: 7.533730e-02	ci right 8.610844e-02	k: 806	n:10000
LILRB3   10000 perm   2 sec   (4755 perm/sec)   p_kst 8.060000e-02   p_cons 9.569000e-01   p_joint 2.174000e-01

Joint ci ratio: 4.913658e-02	ci left: 2.354326e-01	ci right 2.473427e-01	k: 4827	n:20000
Cons ci ratio: 5.734221e-03	ci left: 9.561594e-01	ci right 9.617062e-01	k: 19180	n:20000
KS ci ratio: 9.454337e-02	ci left: 7.539590e-02	ci right 8.292699e-02	k: 1582	n:20000
LILRB3   20000 perm   8 sec   (2584 perm/sec)   p_kst 7.910000e-02   p_cons 9.590000e-01   p_joint 2.413500e-01

Outputting figure to mutsig2_images.part000000000097/LILRB3.4_1951_20000_0.0791_0.959_0.24135.png
                gene_name: LILRB3
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.083 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 17 percent done.
LIMK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.227782e-01	ci left: 8.679344e-02	ci right 9.824521e-02	k: 924	n:10000
Cons ci ratio: 1.128868e-01	ci left: 1.014940e-01	ci right 1.137357e-01	k: 1075	n:10000
KS ci ratio: 1.243397e-01	ci left: 8.475243e-02	ci right 9.608748e-02	k: 903	n:10000
LIMK2   10000 perm   2 sec   (6000 perm/sec)   p_kst 9.030000e-02   p_cons 1.075000e-01   p_joint 9.240000e-02

Joint ci ratio: 9.862781e-02	ci left: 6.957859e-02	ci right 7.684608e-02	k: 1463	n:20000
Cons ci ratio: 8.053930e-02	ci left: 1.016188e-01	ci right 1.101961e-01	k: 2117	n:20000
KS ci ratio: 8.889963e-02	ci left: 8.464776e-02	ci right 9.257232e-02	k: 1771	n:20000
LIMK2   20000 perm   4 sec   (5275 perm/sec)   p_kst 8.855000e-02   p_cons 1.058500e-01   p_joint 7.315000e-02

Outputting figure to mutsig2_images.part000000000097/LIMK2.3_2394_20000_0.08855_0.10585_0.07315.png
                gene_name: LIMK2
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.077 

Current progress: 33 percent done.
LILRA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.498783e-02	ci left: 8.658043e-01	ci right 8.789779e-01	k: 8725	n:10000
Cons ci ratio: 5.925716e-02	ci left: 2.952901e-01	ci right 3.134240e-01	k: 3043	n:10000
KS ci ratio: 9.436336e-03	ci left: 9.406618e-01	ci right 9.496766e-01	k: 9453	n:10000
LILRA4   10000 perm   2 sec   (6384 perm/sec)   p_kst 9.453000e-01   p_cons 3.043000e-01   p_joint 8.725000e-01

Outputting figure to mutsig2_images.part000000000097/LILRA4.2_1532_10000_0.9453_0.3043_0.8725.png
                gene_name: LILRA4
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 50 percent done.
LILRB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.702584e-01	ci left: 5.284222e-03	ci right 8.612765e-03	k: 68	n:10000
Cons ci ratio: 3.255939e-02	ci left: 5.819908e-01	ci right 6.013557e-01	k: 5917	n:10000
KS ci ratio: 1.481028e+00	ci left: 2.202202e-04	ci right 1.305486e-03	k: 6	n:10000
LILRB1   10000 perm   2 sec   (6053 perm/sec)   p_kst 6.000000e-04   p_cons 5.917000e-01   p_joint 6.800000e-03

Joint ci ratio: 2.884389e-01	ci left: 7.830711e-03	ci right 1.051490e-02	k: 182	n:20000
Cons ci ratio: 2.096200e-02	ci left: 6.294379e-01	ci right 6.428225e-01	k: 12723	n:20000
KS ci ratio: 9.235139e-01	ci left: 4.952318e-04	ci right 1.360585e-03	k: 17	n:20000
LILRB1   20000 perm   4 sec   (5368 perm/sec)   p_kst 8.500000e-04   p_cons 6.361500e-01   p_joint 9.100000e-03

Joint ci ratio: 4.679749e-01	ci left: 1.789965e-03	ci right 2.909908e-03	k: 69	n:30000
Cons ci ratio: 1.713353e-02	ci left: 6.301914e-01	ci right 6.411157e-01	k: 19070	n:30000
KS ci ratio: 7.836602e-01	ci left: 5.126402e-04	ci right 1.190104e-03	k: 24	n:30000
LILRB1   30000 perm   6 sec   (5104 perm/sec)   p_kst 8.000000e-04   p_cons 6.356667e-01   p_joint 2.300000e-03

Joint ci ratio: 4.038368e-01	ci left: 1.876973e-03	ci right 2.847537e-03	k: 93	n:40000
Cons ci ratio: 1.482831e-02	ci left: 6.312375e-01	ci right 6.406927e-01	k: 25439	n:40000
KS ci ratio: 7.276527e-01	ci left: 4.651937e-04	ci right 1.011537e-03	k: 28	n:40000
LILRB1   40000 perm   8 sec   (4903 perm/sec)   p_kst 7.000000e-04   p_cons 6.359750e-01   p_joint 2.325000e-03

Joint ci ratio: 3.716530e-01	ci left: 1.808469e-03	ci right 2.650996e-03	k: 110	n:50000
Cons ci ratio: 1.325532e-02	ci left: 6.320054e-01	ci right 6.404588e-01	k: 31812	n:50000
KS ci ratio: 6.623624e-01	ci left: 4.709643e-04	ci right 9.501034e-04	k: 34	n:50000
LILRB1   50000 perm   11 sec   (4655 perm/sec)   p_kst 6.800000e-04   p_cons 6.362400e-01   p_joint 2.200000e-03

Joint ci ratio: 3.447627e-01	ci left: 1.780089e-03	ci right 2.536029e-03	k: 128	n:60000
Cons ci ratio: 1.214421e-02	ci left: 6.306988e-01	ci right 6.384216e-01	k: 38074	n:60000
KS ci ratio: 6.195946e-01	ci left: 4.622531e-04	ci right 8.884654e-04	k: 39	n:60000
LILRB1   60000 perm   13 sec   (4564 perm/sec)   p_kst 6.500000e-04   p_cons 6.345667e-01   p_joint 2.133333e-03

Joint ci ratio: 3.176063e-01	ci left: 1.827092e-03	ci right 2.529483e-03	k: 151	n:70000
Cons ci ratio: 1.125816e-02	ci left: 6.303759e-01	ci right 6.375272e-01	k: 44377	n:70000
KS ci ratio: 5.715947e-01	ci left: 4.811501e-04	ci right 8.764403e-04	k: 46	n:70000
LILRB1   70000 perm   16 sec   (4481 perm/sec)   p_kst 6.571429e-04   p_cons 6.339571e-01   p_joint 2.157143e-03

Joint ci ratio: 2.985739e-01	ci left: 1.829396e-03	ci right 2.482550e-03	k: 171	n:80000
Cons ci ratio: 1.053718e-02	ci left: 6.303378e-01	ci right 6.370275e-01	k: 50695	n:80000
KS ci ratio: 5.332610e-01	ci left: 4.962961e-04	ci right 8.664779e-04	k: 53	n:80000
LILRB1   80000 perm   18 sec   (4401 perm/sec)   p_kst 6.625000e-04   p_cons 6.336875e-01   p_joint 2.137500e-03

Joint ci ratio: 2.559236e-01	ci left: 2.267470e-03	ci right 2.943003e-03	k: 233	n:90000
Cons ci ratio: 9.948087e-03	ci left: 6.298969e-01	ci right 6.362056e-01	k: 56975	n:90000
KS ci ratio: 5.017317e-01	ci left: 5.087743e-04	ci right 8.580500e-04	k: 60	n:90000
LILRB1   90000 perm   21 sec   (4319 perm/sec)   p_kst 6.666667e-04   p_cons 6.330556e-01   p_joint 2.588889e-03

Joint ci ratio: 2.451655e-01	ci left: 2.237538e-03	ci right 2.871865e-03	k: 254	n:100000
Cons ci ratio: 9.451118e-03	ci left: 6.293928e-01	ci right 6.353795e-01	k: 63239	n:100000
KS ci ratio: 4.823570e-01	ci left: 5.016910e-04	ci right 8.284044e-04	k: 65	n:100000
LILRB1   100000 perm   24 sec   (4246 perm/sec)   p_kst 6.500000e-04   p_cons 6.323900e-01   p_joint 2.540000e-03

Joint ci ratio: 1.456102e-01	ci left: 6.068659e-03	ci right 7.030364e-03	k: 719	n:110000
Cons ci ratio: 9.025907e-03	ci left: 6.287779e-01	ci right 6.344879e-01	k: 69480	n:110000
KS ci ratio: 4.524862e-01	ci left: 5.282714e-04	ci right 8.444749e-04	k: 74	n:110000
LILRB1   110000 perm   26 sec   (4172 perm/sec)   p_kst 6.727273e-04   p_cons 6.316364e-01   p_joint 6.536364e-03

Joint ci ratio: 1.386540e-01	ci left: 6.157702e-03	ci right 7.083050e-03	k: 793	n:120000
Cons ci ratio: 8.639853e-03	ci left: 6.289970e-01	ci right 6.344633e-01	k: 75808	n:120000
KS ci ratio: 4.381214e-01	ci left: 5.212423e-04	ci right 8.204132e-04	k: 79	n:120000
LILRB1   120000 perm   29 sec   (4101 perm/sec)   p_kst 6.583333e-04   p_cons 6.317333e-01   p_joint 6.608333e-03

Joint ci ratio: 1.337767e-01	ci left: 6.122407e-03	ci right 7.007512e-03	k: 852	n:130000
Cons ci ratio: 8.291761e-03	ci left: 6.296182e-01	ci right 6.348682e-01	k: 82192	n:130000
KS ci ratio: 4.225630e-01	ci left: 5.223014e-04	ci right 8.084284e-04	k: 85	n:130000
LILRB1   130000 perm   32 sec   (4032 perm/sec)   p_kst 6.538462e-04   p_cons 6.322462e-01   p_joint 6.553846e-03

Joint ci ratio: 2.129616e-01	ci left: 2.157235e-03	ci right 2.678002e-03	k: 337	n:140000
Cons ci ratio: 7.991184e-03	ci left: 6.296535e-01	ci right 6.347125e-01	k: 88506	n:140000
KS ci ratio: 4.020456e-01	ci left: 5.426157e-04	ci right 8.215968e-04	k: 94	n:140000
LILRB1   140000 perm   35 sec   (3964 perm/sec)   p_kst 6.714286e-04   p_cons 6.321857e-01   p_joint 2.407143e-03

Joint ci ratio: 1.263768e-01	ci left: 5.970393e-03	ci right 6.782198e-03	k: 955	n:150000
Cons ci ratio: 7.707040e-03	ci left: 6.305349e-01	ci right 6.354199e-01	k: 94947	n:150000
KS ci ratio: 3.770651e-01	ci left: 5.846296e-04	ci right 8.619262e-04	k: 107	n:150000
LILRB1   150000 perm   39 sec   (3896 perm/sec)   p_kst 7.133333e-04   p_cons 6.329800e-01   p_joint 6.366667e-03

Joint ci ratio: 1.233250e-01	ci left: 5.887859e-03	ci right 6.667695e-03	k: 1003	n:160000
Cons ci ratio: 7.460686e-03	ci left: 6.307141e-01	ci right 6.354435e-01	k: 101293	n:160000
KS ci ratio: 3.702744e-01	ci left: 5.707416e-04	ci right 8.353948e-04	k: 111	n:160000
LILRB1   160000 perm   42 sec   (3832 perm/sec)   p_kst 6.937500e-04   p_cons 6.330813e-01   p_joint 6.268750e-03

Joint ci ratio: 1.200825e-01	ci left: 5.855188e-03	ci right 6.608859e-03	k: 1058	n:170000
Cons ci ratio: 7.234249e-03	ci left: 6.310217e-01	ci right 6.356091e-01	k: 107664	n:170000
KS ci ratio: 3.622783e-01	ci left: 5.638732e-04	ci right 8.183617e-04	k: 116	n:170000
LILRB1   170000 perm   45 sec   (3769 perm/sec)   p_kst 6.823529e-04   p_cons 6.333176e-01   p_joint 6.223529e-03

Joint ci ratio: 1.168722e-01	ci left: 5.847963e-03	ci right 6.579189e-03	k: 1117	n:180000
Cons ci ratio: 7.027164e-03	ci left: 6.313025e-01	ci right 6.357599e-01	k: 114036	n:180000
KS ci ratio: 3.547788e-01	ci left: 5.578225e-04	ci right 8.031672e-04	k: 121	n:180000
LILRB1   180000 perm   49 sec   (3706 perm/sec)   p_kst 6.722222e-04   p_cons 6.335333e-01   p_joint 6.205556e-03

Joint ci ratio: 1.931496e-01	ci left: 1.954243e-03	ci right 2.376966e-03	k: 410	n:190000
Cons ci ratio: 6.843256e-03	ci left: 6.311232e-01	ci right 6.354622e-01	k: 120326	n:190000
KS ci ratio: 3.463647e-01	ci left: 5.572620e-04	ci right 7.952438e-04	k: 127	n:190000
LILRB1   190000 perm   52 sec   (3648 perm/sec)   p_kst 6.684211e-04   p_cons 6.332947e-01   p_joint 2.157895e-03

Joint ci ratio: 1.107949e-01	ci left: 5.875243e-03	ci right 6.569185e-03	k: 1243	n:200000
Cons ci ratio: 6.663303e-03	ci left: 6.316441e-01	ci right 6.358720e-01	k: 126752	n:200000
KS ci ratio: 3.360221e-01	ci left: 5.659730e-04	ci right 7.988947e-04	k: 135	n:200000
LILRB1   200000 perm   56 sec   (3592 perm/sec)   p_kst 6.750000e-04   p_cons 6.337600e-01   p_joint 6.215000e-03

Joint ci ratio: 1.086365e-01	ci left: 5.827023e-03	ci right 6.501003e-03	k: 1293	n:210000
Cons ci ratio: 6.501425e-03	ci left: 6.317877e-01	ci right 6.359133e-01	k: 133109	n:210000
KS ci ratio: 3.311892e-01	ci left: 5.564737e-04	ci right 7.814902e-04	k: 139	n:210000
LILRB1   210000 perm   59 sec   (3537 perm/sec)   p_kst 6.619048e-04   p_cons 6.338524e-01   p_joint 6.157143e-03

Joint ci ratio: 1.800475e-01	ci left: 1.956424e-03	ci right 2.347787e-03	k: 472	n:220000
Cons ci ratio: 6.350986e-03	ci left: 6.319057e-01	ci right 6.359362e-01	k: 139463	n:220000
KS ci ratio: 3.243131e-01	ci left: 5.562085e-04	ci right 7.754767e-04	k: 145	n:220000
LILRB1   220000 perm   63 sec   (3484 perm/sec)   p_kst 6.590909e-04   p_cons 6.339227e-01   p_joint 2.145455e-03

Joint ci ratio: 1.817974e-01	ci left: 1.833993e-03	ci right 2.204823e-03	k: 463	n:230000
Cons ci ratio: 6.212448e-03	ci left: 6.318708e-01	ci right 6.358128e-01	k: 145784	n:230000
KS ci ratio: 3.188996e-01	ci left: 5.520098e-04	ci right 7.652487e-04	k: 150	n:230000
LILRB1   230000 perm   67 sec   (3430 perm/sec)   p_kst 6.521739e-04   p_cons 6.338435e-01   p_joint 2.013043e-03

Joint ci ratio: 1.778177e-01	ci left: 1.841140e-03	ci right 2.204388e-03	k: 484	n:240000
Cons ci ratio: 6.079541e-03	ci left: 6.320733e-01	ci right 6.359318e-01	k: 152161	n:240000
KS ci ratio: 3.097992e-01	ci left: 5.635523e-04	ci right 7.738109e-04	k: 159	n:240000
LILRB1   240000 perm   71 sec   (3379 perm/sec)   p_kst 6.625000e-04   p_cons 6.340042e-01   p_joint 2.016667e-03

Joint ci ratio: 1.751320e-01	ci left: 1.824842e-03	ci right 2.178862e-03	k: 499	n:250000
Cons ci ratio: 5.955121e-03	ci left: 6.322363e-01	ci right 6.360166e-01	k: 158532	n:250000
KS ci ratio: 3.059995e-01	ci left: 5.557738e-04	ci right 7.600913e-04	k: 163	n:250000
LILRB1   250000 perm   75 sec   (3327 perm/sec)   p_kst 6.520000e-04   p_cons 6.341280e-01   p_joint 1.996000e-03

Joint ci ratio: 1.722296e-01	ci left: 1.817198e-03	ci right 2.163285e-03	k: 516	n:260000
Cons ci ratio: 6.313930e-03	ci left: 5.952925e-01	ci right 5.990669e-01	k: 155267	n:260000
KS ci ratio: 3.014399e-01	ci left: 5.521632e-04	ci right 7.515491e-04	k: 168	n:260000
LILRB1   260000 perm   79 sec   (3277 perm/sec)   p_kst 6.461538e-04   p_cons 5.971808e-01   p_joint 1.984615e-03

Joint ci ratio: 1.678989e-01	ci left: 1.845641e-03	ci right 2.187412e-03	k: 543	n:270000
Cons ci ratio: 6.197277e-03	ci left: 5.952211e-01	ci right 5.989250e-01	k: 161210	n:270000
KS ci ratio: 2.953843e-01	ci left: 5.556982e-04	ci right 7.515747e-04	k: 175	n:270000
LILRB1   270000 perm   84 sec   (3232 perm/sec)   p_kst 6.481481e-04   p_cons 5.970741e-01   p_joint 2.011111e-03

Joint ci ratio: 1.654842e-01	ci left: 1.834483e-03	ci right 2.168816e-03	k: 559	n:280000
Cons ci ratio: 6.087176e-03	ci left: 5.951304e-01	ci right 5.987676e-01	k: 167146	n:280000
KS ci ratio: 2.912766e-01	ci left: 5.523951e-04	ci right 7.439003e-04	k: 180	n:280000
LILRB1   280000 perm   88 sec   (3172 perm/sec)   p_kst 6.428571e-04   p_cons 5.969500e-01   p_joint 1.996429e-03

Joint ci ratio: 1.626060e-01	ci left: 1.837360e-03	ci right 2.165824e-03	k: 579	n:290000
Cons ci ratio: 5.982012e-03	ci left: 5.951051e-01	ci right 5.986791e-01	k: 173099	n:290000
KS ci ratio: 2.865659e-01	ci left: 5.525375e-04	ci right 7.404334e-04	k: 186	n:290000
LILRB1   290000 perm   93 sec   (3127 perm/sec)   p_kst 6.413793e-04   p_cons 5.968931e-01   p_joint 1.996552e-03

Joint ci ratio: 1.609517e-01	ci left: 1.814493e-03	ci right 2.135250e-03	k: 591	n:300000
Cons ci ratio: 5.881383e-03	ci left: 5.951421e-01	ci right 5.986560e-01	k: 179070	n:300000
KS ci ratio: 2.842961e-01	ci left: 5.434034e-04	ci right 7.264668e-04	k: 189	n:300000
LILRB1   300000 perm   97 sec   (3085 perm/sec)   p_kst 6.300000e-04   p_cons 5.969000e-01   p_joint 1.970000e-03

Joint ci ratio: 1.579125e-01	ci left: 1.827195e-03	ci right 2.143521e-03	k: 614	n:310000
Cons ci ratio: 5.785900e-03	ci left: 5.951578e-01	ci right 5.986145e-01	k: 185035	n:310000
KS ci ratio: 2.799110e-01	ci left: 5.438600e-04	ci right 7.237529e-04	k: 195	n:310000
LILRB1   310000 perm   102 sec   (3044 perm/sec)   p_kst 6.290323e-04   p_cons 5.968871e-01   p_joint 1.980645e-03

Joint ci ratio: 1.555285e-01	ci left: 1.827142e-03	ci right 2.138237e-03	k: 633	n:320000
Cons ci ratio: 5.694182e-03	ci left: 5.952356e-01	ci right 5.986377e-01	k: 191020	n:320000
KS ci ratio: 2.777946e-01	ci left: 5.355836e-04	ci right 7.111650e-04	k: 198	n:320000
LILRB1   320000 perm   107 sec   (3004 perm/sec)   p_kst 6.187500e-04   p_cons 5.969375e-01   p_joint 1.978125e-03

Joint ci ratio: 1.530148e-01	ci left: 1.832954e-03	ci right 2.139533e-03	k: 654	n:330000
Cons ci ratio: 5.607857e-03	ci left: 5.952089e-01	ci right 5.985591e-01	k: 196972	n:330000
KS ci ratio: 2.723730e-01	ci left: 5.419246e-04	ci right 7.155245e-04	k: 206	n:330000
LILRB1   330000 perm   111 sec   (2964 perm/sec)   p_kst 6.242424e-04   p_cons 5.968848e-01   p_joint 1.981818e-03

Joint ci ratio: 1.511803e-01	ci left: 1.824311e-03	ci right 2.125455e-03	k: 670	n:340000
Cons ci ratio: 5.525613e-03	ci left: 5.951606e-01	ci right 5.984613e-01	k: 202916	n:340000
KS ci ratio: 2.697798e-01	ci left: 5.369506e-04	ci right 7.070423e-04	k: 210	n:340000
LILRB1   340000 perm   116 sec   (2927 perm/sec)   p_kst 6.176471e-04   p_cons 5.968118e-01   p_joint 1.970588e-03

Joint ci ratio: 1.483325e-01	ci left: 1.843692e-03	ci right 2.141793e-03	k: 696	n:350000
Cons ci ratio: 5.447563e-03	ci left: 5.950554e-01	ci right 5.983087e-01	k: 208839	n:350000
KS ci ratio: 2.618318e-01	ci left: 5.562784e-04	ci right 7.264516e-04	k: 223	n:350000
LILRB1   350000 perm   122 sec   (2865 perm/sec)   p_kst 6.371429e-04   p_cons 5.966829e-01   p_joint 1.988571e-03

Joint ci ratio: 1.468660e-01	ci left: 1.829930e-03	ci right 2.122624e-03	k: 710	n:360000
Cons ci ratio: 5.370868e-03	ci left: 5.951232e-01	ci right 5.983308e-01	k: 214822	n:360000
KS ci ratio: 2.612513e-01	ci left: 5.434214e-04	ci right 7.092326e-04	k: 224	n:360000
LILRB1   360000 perm   128 sec   (2816 perm/sec)   p_kst 6.222222e-04   p_cons 5.967278e-01   p_joint 1.972222e-03

Joint ci ratio: 1.452417e-01	ci left: 1.822135e-03	ci right 2.110079e-03	k: 726	n:370000
Cons ci ratio: 5.299080e-03	ci left: 5.950280e-01	ci right 5.981921e-01	k: 220746	n:370000
KS ci ratio: 2.595280e-01	ci left: 5.363130e-04	ci right 6.987007e-04	k: 227	n:370000
LILRB1   370000 perm   133 sec   (2782 perm/sec)   p_kst 6.135135e-04   p_cons 5.966108e-01   p_joint 1.962162e-03

Joint ci ratio: 1.434766e-01	ci left: 1.819841e-03	ci right 2.103629e-03	k: 744	n:380000
Cons ci ratio: 5.228780e-03	ci left: 5.950592e-01	ci right 5.981814e-01	k: 226716	n:380000
KS ci ratio: 2.578383e-01	ci left: 5.295821e-04	ci right 6.887197e-04	k: 230	n:380000
LILRB1   380000 perm   138 sec   (2749 perm/sec)   p_kst 6.052632e-04   p_cons 5.966211e-01   p_joint 1.957895e-03

Joint ci ratio: 1.415886e-01	ci left: 1.822632e-03	ci right 2.102799e-03	k: 764	n:390000
Cons ci ratio: 5.160545e-03	ci left: 5.951507e-01	ci right 5.982325e-01	k: 232710	n:390000
KS ci ratio: 2.545537e-01	ci left: 5.303999e-04	ci right 6.874306e-04	k: 236	n:390000
LILRB1   390000 perm   144 sec   (2717 perm/sec)   p_kst 6.051282e-04   p_cons 5.966923e-01   p_joint 1.958974e-03

Joint ci ratio: 1.398626e-01	ci left: 1.822894e-03	ci right 2.099401e-03	k: 783	n:400000
Cons ci ratio: 5.095496e-03	ci left: 5.951828e-01	ci right 5.982258e-01	k: 238682	n:400000
KS ci ratio: 2.529587e-01	ci left: 5.241628e-04	ci right 6.782211e-04	k: 239	n:400000
LILRB1   400000 perm   149 sec   (2686 perm/sec)   p_kst 5.975000e-04   p_cons 5.967050e-01   p_joint 1.957500e-03

Joint ci ratio: 1.372593e-01	ci left: 1.849069e-03	ci right 2.123899e-03	k: 813	n:410000
Cons ci ratio: 5.032311e-03	ci left: 5.952649e-01	ci right 5.982704e-01	k: 244675	n:410000
KS ci ratio: 2.483442e-01	ci left: 5.319511e-04	ci right 6.850060e-04	k: 248	n:410000
LILRB1   410000 perm   154 sec   (2655 perm/sec)   p_kst 6.048780e-04   p_cons 5.967683e-01   p_joint 1.982927e-03

Joint ci ratio: 1.352788e-01	ci left: 1.860239e-03	ci right 2.132419e-03	k: 837	n:420000
Cons ci ratio: 4.969673e-03	ci left: 5.955123e-01	ci right 5.984816e-01	k: 250739	n:420000
KS ci ratio: 2.454051e-01	ci left: 5.326876e-04	ci right 6.838640e-04	k: 254	n:420000
LILRB1   420000 perm   161 sec   (2614 perm/sec)   p_kst 6.047619e-04   p_cons 5.969976e-01   p_joint 1.992857e-03

Joint ci ratio: 1.334593e-01	ci left: 1.868668e-03	ci right 2.138113e-03	k: 860	n:430000
Cons ci ratio: 4.910122e-03	ci left: 5.956694e-01	ci right 5.986037e-01	k: 256769	n:430000
KS ci ratio: 2.435033e-01	ci left: 5.290319e-04	ci right 6.778314e-04	k: 258	n:430000
LILRB1   430000 perm   166 sec   (2586 perm/sec)   p_kst 6.000000e-04   p_cons 5.971372e-01   p_joint 2.000000e-03

Joint ci ratio: 1.320108e-01	ci left: 1.867947e-03	ci right 2.134134e-03	k: 879	n:440000
Cons ci ratio: 4.853692e-03	ci left: 5.957172e-01	ci right 5.986179e-01	k: 262754	n:440000
KS ci ratio: 2.407309e-01	ci left: 5.298176e-04	ci right 6.768882e-04	k: 264	n:440000
LILRB1   440000 perm   173 sec   (2546 perm/sec)   p_kst 6.000000e-04   p_cons 5.971682e-01   p_joint 1.997727e-03

Joint ci ratio: 1.309740e-01	ci left: 1.856524e-03	ci right 2.118844e-03	k: 893	n:450000
Cons ci ratio: 4.798211e-03	ci left: 5.958587e-01	ci right 5.987268e-01	k: 268782	n:450000
KS ci ratio: 2.393805e-01	ci left: 5.243094e-04	ci right 6.689134e-04	k: 267	n:450000
LILRB1   450000 perm   179 sec   (2518 perm/sec)   p_kst 5.933333e-04   p_cons 5.972933e-01   p_joint 1.984444e-03

Joint ci ratio: 1.297466e-01	ci left: 1.851915e-03	ci right 2.110944e-03	k: 910	n:460000
Cons ci ratio: 4.746005e-03	ci left: 5.958506e-01	ci right 5.986873e-01	k: 274744	n:460000
KS ci ratio: 2.363140e-01	ci left: 5.272221e-04	ci right 6.704942e-04	k: 274	n:460000
LILRB1   460000 perm   185 sec   (2490 perm/sec)   p_kst 5.956522e-04   p_cons 5.972696e-01   p_joint 1.978261e-03

Joint ci ratio: 1.280700e-01	ci left: 1.861931e-03	ci right 2.118739e-03	k: 934	n:470000
Cons ci ratio: 4.696131e-03	ci left: 5.957749e-01	ci right 5.985814e-01	k: 280674	n:470000
KS ci ratio: 2.333623e-01	ci left: 5.300221e-04	ci right 6.719965e-04	k: 281	n:470000
LILRB1   470000 perm   191 sec   (2465 perm/sec)   p_kst 5.978723e-04   p_cons 5.971787e-01   p_joint 1.987234e-03

Joint ci ratio: 1.264568e-01	ci left: 1.871549e-03	ci right 2.126189e-03	k: 958	n:480000
Cons ci ratio: 4.648501e-03	ci left: 5.956295e-01	ci right 5.984068e-01	k: 286569	n:480000
KS ci ratio: 2.305186e-01	ci left: 5.327160e-04	ci right 6.734257e-04	k: 288	n:480000
LILRB1   480000 perm   197 sec   (2441 perm/sec)   p_kst 6.000000e-04   p_cons 5.970188e-01   p_joint 1.995833e-03

Joint ci ratio: 1.254799e-01	ci left: 1.863001e-03	ci right 2.114374e-03	k: 973	n:490000
Cons ci ratio: 4.599831e-03	ci left: 5.957475e-01	ci right 5.984962e-01	k: 292590	n:490000
KS ci ratio: 2.273923e-01	ci left: 5.372346e-04	ci right 6.769434e-04	k: 296	n:490000
LILRB1   490000 perm   203 sec   (2416 perm/sec)   p_kst 6.040816e-04   p_cons 5.971224e-01   p_joint 1.985714e-03

Joint ci ratio: 1.236514e-01	ci left: 1.881935e-03	ci right 2.131892e-03	k: 1002	n:500000
Cons ci ratio: 4.551542e-03	ci left: 5.959791e-01	ci right 5.986998e-01	k: 298670	n:500000
KS ci ratio: 2.240227e-01	ci left: 5.434725e-04	ci right 6.824202e-04	k: 305	n:500000
LILRB1   500000 perm   209 sec   (2387 perm/sec)   p_kst 6.100000e-04   p_cons 5.973400e-01   p_joint 2.004000e-03

Joint ci ratio: 1.224368e-01	ci left: 1.883043e-03	ci right 2.130512e-03	k: 1022	n:510000
Cons ci ratio: 4.506063e-03	ci left: 5.960604e-01	ci right 5.987542e-01	k: 304678	n:510000
KS ci ratio: 2.225731e-01	ci left: 5.402205e-04	ci right 6.773207e-04	k: 309	n:510000
LILRB1   510000 perm   216 sec   (2363 perm/sec)   p_kst 6.058824e-04   p_cons 5.974078e-01   p_joint 2.003922e-03

Joint ci ratio: 1.213155e-01	ci left: 1.882255e-03	ci right 2.127192e-03	k: 1041	n:520000
Cons ci ratio: 4.463579e-03	ci left: 5.959597e-01	ci right 5.986277e-01	k: 310593	n:520000
KS ci ratio: 2.197552e-01	ci left: 5.443642e-04	ci right 6.805306e-04	k: 317	n:520000
LILRB1   520000 perm   222 sec   (2339 perm/sec)   p_kst 6.096154e-04   p_cons 5.972942e-01   p_joint 2.001923e-03

Joint ci ratio: 1.200545e-01	ci left: 1.886998e-03	ci right 2.129818e-03	k: 1063	n:530000
Cons ci ratio: 4.420991e-03	ci left: 5.960027e-01	ci right 5.986453e-01	k: 316582	n:530000
KS ci ratio: 2.173756e-01	ci left: 5.465778e-04	ci right 6.816197e-04	k: 324	n:530000
LILRB1   530000 perm   229 sec   (2316 perm/sec)   p_kst 6.113208e-04   p_cons 5.973245e-01   p_joint 2.005660e-03

Joint ci ratio: 1.193285e-01	ci left: 1.875406e-03	ci right 2.115173e-03	k: 1076	n:540000
Cons ci ratio: 4.379717e-03	ci left: 5.960312e-01	ci right 5.986492e-01	k: 322564	n:540000
KS ci ratio: 2.147482e-01	ci left: 5.504693e-04	ci right 6.846122e-04	k: 332	n:540000
LILRB1   540000 perm   236 sec   (2289 perm/sec)   p_kst 6.148148e-04   p_cons 5.973407e-01   p_joint 1.992593e-03

Joint ci ratio: 1.183981e-01	ci left: 1.871298e-03	ci right 2.108543e-03	k: 1093	n:550000
Cons ci ratio: 4.339152e-03	ci left: 5.961061e-01	ci right 5.987001e-01	k: 328572	n:550000
KS ci ratio: 2.128394e-01	ci left: 5.507858e-04	ci right 6.836571e-04	k: 338	n:550000
LILRB1   550000 perm   243 sec   (2268 perm/sec)   p_kst 6.145455e-04   p_cons 5.974036e-01   p_joint 1.987273e-03

Joint ci ratio: 1.173304e-01	ci left: 1.872543e-03	ci right 2.107657e-03	k: 1113	n:560000
Cons ci ratio: 4.300300e-03	ci left: 5.961106e-01	ci right 5.986813e-01	k: 334542	n:560000
KS ci ratio: 2.112871e-01	ci left: 5.494047e-04	ci right 6.808510e-04	k: 343	n:560000
LILRB1   560000 perm   249 sec   (2246 perm/sec)   p_kst 6.125000e-04   p_cons 5.973964e-01   p_joint 1.987500e-03

Joint ci ratio: 1.159841e-01	ci left: 1.883975e-03	ci right 2.117624e-03	k: 1139	n:570000
Cons ci ratio: 4.262162e-03	ci left: 5.961501e-01	ci right 5.986981e-01	k: 340532	n:570000
KS ci ratio: 2.097684e-01	ci left: 5.480754e-04	ci right 6.781401e-04	k: 348	n:570000
LILRB1   570000 perm   257 sec   (2216 perm/sec)   p_kst 6.105263e-04   p_cons 5.974246e-01   p_joint 1.998246e-03

Joint ci ratio: 1.151791e-01	ci left: 1.878281e-03	ci right 2.109497e-03	k: 1155	n:580000
Cons ci ratio: 4.224612e-03	ci left: 5.962349e-01	ci right 5.987607e-01	k: 346549	n:580000
KS ci ratio: 2.079881e-01	ci left: 5.484296e-04	ci right 6.773331e-04	k: 354	n:580000
LILRB1   580000 perm   264 sec   (2194 perm/sec)   p_kst 6.103448e-04   p_cons 5.974983e-01   p_joint 1.991379e-03

Joint ci ratio: 1.143905e-01	ci left: 1.872785e-03	ci right 2.101640e-03	k: 1171	n:590000
Cons ci ratio: 4.187388e-03	ci left: 5.963915e-01	ci right 5.988957e-01	k: 352610	n:590000
KS ci ratio: 2.071154e-01	ci left: 5.439545e-04	ci right 6.712018e-04	k: 357	n:590000
LILRB1   590000 perm   271 sec   (2174 perm/sec)   p_kst 6.050847e-04   p_cons 5.976441e-01   p_joint 1.984746e-03

Joint ci ratio: 1.134268e-01	ci left: 1.873956e-03	ci right 2.100896e-03	k: 1191	n:600000
Cons ci ratio: 4.153043e-03	ci left: 5.963212e-01	ci right 5.988045e-01	k: 358538	n:600000
KS ci ratio: 2.065400e-01	ci left: 5.380491e-04	ci right 6.635210e-04	k: 359	n:600000
LILRB1   600000 perm   279 sec   (2153 perm/sec)   p_kst 5.983333e-04   p_cons 5.975633e-01   p_joint 1.985000e-03

Joint ci ratio: 1.126268e-01	ci left: 1.870316e-03	ci right 2.095111e-03	k: 1208	n:610000
Cons ci ratio: 4.118295e-03	ci left: 5.963976e-01	ci right 5.988604e-01	k: 364554	n:610000
KS ci ratio: 2.042823e-01	ci left: 5.416690e-04	ci right 6.664319e-04	k: 367	n:610000
LILRB1   610000 perm   286 sec   (2133 perm/sec)   p_kst 6.016393e-04   p_cons 5.976295e-01   p_joint 1.980328e-03

Joint ci ratio: 1.119350e-01	ci left: 1.863664e-03	ci right 2.086192e-03	k: 1223	n:620000
Cons ci ratio: 4.084856e-03	ci left: 5.964184e-01	ci right 5.988613e-01	k: 370537	n:620000
KS ci ratio: 2.034552e-01	ci left: 5.375240e-04	ci right 6.607686e-04	k: 370	n:620000
LILRB1   620000 perm   293 sec   (2114 perm/sec)   p_kst 5.967742e-04   p_cons 5.976403e-01   p_joint 1.972581e-03

Joint ci ratio: 1.107642e-01	ci left: 1.874203e-03	ci right 2.095496e-03	k: 1249	n:630000
Cons ci ratio: 4.052981e-03	ci left: 5.963481e-01	ci right 5.987716e-01	k: 376463	n:630000
KS ci ratio: 2.012961e-01	ci left: 5.410469e-04	ci right 6.636211e-04	k: 378	n:630000
LILRB1   630000 perm   301 sec   (2090 perm/sec)   p_kst 6.000000e-04   p_cons 5.975603e-01   p_joint 1.982540e-03

Joint ci ratio: 1.099319e-01	ci left: 1.873786e-03	ci right 2.093261e-03	k: 1268	n:640000
Cons ci ratio: 4.021945e-03	ci left: 5.962676e-01	ci right 5.986721e-01	k: 382381	n:640000
KS ci ratio: 1.997214e-01	ci left: 5.414974e-04	ci right 6.630970e-04	k: 384	n:640000
LILRB1   640000 perm   310 sec   (2066 perm/sec)   p_kst 6.000000e-04   p_cons 5.974703e-01   p_joint 1.981250e-03

Joint ci ratio: 1.090334e-01	ci left: 1.876382e-03	ci right 2.094249e-03	k: 1289	n:650000
Cons ci ratio: 3.991356e-03	ci left: 5.962204e-01	ci right 5.986064e-01	k: 388319	n:650000
KS ci ratio: 1.984372e-01	ci left: 5.404755e-04	ci right 6.609708e-04	k: 389	n:650000
LILRB1   650000 perm   317 sec   (2049 perm/sec)   p_kst 5.984615e-04   p_cons 5.974138e-01   p_joint 1.983077e-03

Joint ci ratio: 1.082807e-01	ci left: 1.874483e-03	ci right 2.090532e-03	k: 1307	n:660000
Cons ci ratio: 3.961167e-03	ci left: 5.962096e-01	ci right 5.985774e-01	k: 394280	n:660000
KS ci ratio: 1.974276e-01	ci left: 5.380467e-04	ci right 6.573168e-04	k: 393	n:660000
LILRB1   660000 perm   325 sec   (2031 perm/sec)   p_kst 5.954545e-04   p_cons 5.973939e-01   p_joint 1.980303e-03

Joint ci ratio: 1.072601e-01	ci left: 1.882814e-03	ci right 2.097648e-03	k: 1332	n:670000
Cons ci ratio: 3.932543e-03	ci left: 5.960901e-01	ci right 5.984404e-01	k: 400168	n:670000
KS ci ratio: 1.942480e-01	ci left: 5.484681e-04	ci right 6.678588e-04	k: 406	n:670000
LILRB1   670000 perm   334 sec   (2006 perm/sec)   p_kst 6.059701e-04   p_cons 5.972657e-01   p_joint 1.988060e-03

Joint ci ratio: 1.066620e-01	ci left: 1.876594e-03	ci right 2.089449e-03	k: 1347	n:680000
Cons ci ratio: 3.904531e-03	ci left: 5.959743e-01	ci right 5.983073e-01	k: 406056	n:680000
KS ci ratio: 1.935365e-01	ci left: 5.445999e-04	ci right 6.626632e-04	k: 409	n:680000
LILRB1   680000 perm   343 sec   (1985 perm/sec)   p_kst 6.014706e-04   p_cons 5.971412e-01   p_joint 1.980882e-03

Joint ci ratio: 1.055706e-01	ci left: 1.888900e-03	ci right 2.100823e-03	k: 1375	n:690000
Cons ci ratio: 3.876769e-03	ci left: 5.959039e-01	ci right 5.982200e-01	k: 411973	n:690000
KS ci ratio: 1.905384e-01	ci left: 5.546422e-04	ci right 6.728042e-04	k: 422	n:690000
LILRB1   690000 perm   351 sec   (1966 perm/sec)   p_kst 6.115942e-04   p_cons 5.970623e-01   p_joint 1.992754e-03

Joint ci ratio: 1.048493e-01	ci left: 1.888345e-03	ci right 2.098668e-03	k: 1394	n:700000
Cons ci ratio: 3.849008e-03	ci left: 5.959084e-01	ci right 5.982079e-01	k: 417941	n:700000
KS ci ratio: 1.898667e-01	ci left: 5.508003e-04	ci right 6.676824e-04	k: 425	n:700000
LILRB1   700000 perm   359 sec   (1950 perm/sec)   p_kst 6.071429e-04   p_cons 5.970586e-01   p_joint 1.991429e-03

Joint ci ratio: 1.041425e-01	ci left: 1.887809e-03	ci right 2.096569e-03	k: 1413	n:710000
Cons ci ratio: 3.822194e-03	ci left: 5.958678e-01	ci right 5.981511e-01	k: 423877	n:710000
KS ci ratio: 1.892021e-01	ci left: 5.470673e-04	ci right 6.627042e-04	k: 428	n:710000
LILRB1   710000 perm   368 sec   (1930 perm/sec)   p_kst 6.028169e-04   p_cons 5.970099e-01   p_joint 1.990141e-03

Joint ci ratio: 1.035223e-01	ci left: 1.884587e-03	ci right 2.091674e-03	k: 1430	n:720000
Cons ci ratio: 3.795844e-03	ci left: 5.958395e-01	ci right 5.981069e-01	k: 429821	n:720000
KS ci ratio: 1.881092e-01	ci left: 5.460856e-04	ci right 6.607721e-04	k: 433	n:720000
LILRB1   720000 perm   376 sec   (1914 perm/sec)   p_kst 6.013889e-04   p_cons 5.969736e-01   p_joint 1.986111e-03

Joint ci ratio: 1.029130e-01	ci left: 1.881458e-03	ci right 2.086910e-03	k: 1447	n:730000
Cons ci ratio: 3.769849e-03	ci left: 5.958354e-01	ci right 5.980872e-01	k: 435782	n:730000
KS ci ratio: 1.866101e-01	ci left: 5.477443e-04	ci right 6.617586e-04	k: 440	n:730000
LILRB1   730000 perm   385 sec   (1898 perm/sec)   p_kst 6.027397e-04   p_cons 5.969616e-01   p_joint 1.982192e-03

Joint ci ratio: 1.022096e-01	ci left: 1.882366e-03	ci right 2.086429e-03	k: 1467	n:740000
Cons ci ratio: 3.744423e-03	ci left: 5.958260e-01	ci right 5.980625e-01	k: 441739	n:740000
KS ci ratio: 1.847343e-01	ci left: 5.519394e-04	ci right 6.655426e-04	k: 449	n:740000
LILRB1   740000 perm   394 sec   (1877 perm/sec)   p_kst 6.067568e-04   p_cons 5.969446e-01   p_joint 1.982432e-03

Joint ci ratio: 1.014520e-01	ci left: 1.885854e-03	ci right 2.088690e-03	k: 1489	n:750000
Cons ci ratio: 3.720206e-03	ci left: 5.957261e-01	ci right 5.979478e-01	k: 447628	n:750000
KS ci ratio: 1.835149e-01	ci left: 5.522115e-04	ci right 6.650370e-04	k: 455	n:750000
LILRB1   750000 perm   403 sec   (1861 perm/sec)   p_kst 6.066667e-04   p_cons 5.968373e-01   p_joint 1.985333e-03

Joint ci ratio: 1.007779e-01	ci left: 1.886691e-03	ci right 2.088188e-03	k: 1509	n:760000
Cons ci ratio: 3.695532e-03	ci left: 5.957488e-01	ci right 5.979557e-01	k: 453608	n:760000
KS ci ratio: 1.821222e-01	ci left: 5.537346e-04	ci right 6.659181e-04	k: 462	n:760000
LILRB1   760000 perm   412 sec   (1846 perm/sec)   p_kst 6.078947e-04   p_cons 5.968526e-01   p_joint 1.985526e-03

Joint ci ratio: 9.992096e-02	ci left: 1.895108e-03	ci right 2.095681e-03	k: 1535	n:770000
Cons ci ratio: 3.671918e-03	ci left: 5.956955e-01	ci right 5.978882e-01	k: 459530	n:770000
KS ci ratio: 1.809535e-01	ci left: 5.539814e-04	ci right 6.654157e-04	k: 468	n:770000
LILRB1   770000 perm   422 sec   (1827 perm/sec)   p_kst 6.077922e-04   p_cons 5.967922e-01   p_joint 1.993506e-03

Joint ci ratio: 9.902197e-02	ci left: 1.905816e-03	ci right 2.105603e-03	k: 1563	n:780000
Cons ci ratio: 3.648148e-03	ci left: 5.957232e-01	ci right 5.979017e-01	k: 465514	n:780000
KS ci ratio: 1.798070e-01	ci left: 5.542240e-04	ci right 6.649240e-04	k: 474	n:780000
LILRB1   780000 perm   430 sec   (1812 perm/sec)   p_kst 6.076923e-04   p_cons 5.968128e-01   p_joint 2.003846e-03

Joint ci ratio: 9.833267e-02	ci left: 1.908853e-03	ci right 2.107485e-03	k: 1585	n:790000
Cons ci ratio: 3.625453e-03	ci left: 5.956679e-01	ci right 5.978326e-01	k: 471433	n:790000
KS ci ratio: 1.783115e-01	ci left: 5.568813e-04	ci right 6.670871e-04	k: 482	n:790000
LILRB1   790000 perm   439 sec   (1798 perm/sec)   p_kst 6.101266e-04   p_cons 5.967506e-01   p_joint 2.006329e-03

Joint ci ratio: 9.753608e-02	ci left: 1.916697e-03	ci right 2.114437e-03	k: 1611	n:800000
Cons ci ratio: 3.602971e-03	ci left: 5.956416e-01	ci right 5.977927e-01	k: 477374	n:800000
KS ci ratio: 1.763146e-01	ci left: 5.630602e-04	ci right 6.731079e-04	k: 493	n:800000
LILRB1   800000 perm   448 sec   (1784 perm/sec)   p_kst 6.162500e-04   p_cons 5.967175e-01   p_joint 2.013750e-03

Joint ci ratio: 9.696637e-02	ci left: 1.915920e-03	ci right 2.112360e-03	k: 1630	n:810000
Cons ci ratio: 3.580847e-03	ci left: 5.956233e-01	ci right 5.977612e-01	k: 483321	n:810000
KS ci ratio: 1.752535e-01	ci left: 5.631904e-04	ci right 6.725309e-04	k: 499	n:810000
LILRB1   810000 perm   458 sec   (1770 perm/sec)   p_kst 6.160494e-04   p_cons 5.966926e-01   p_joint 2.012346e-03

Joint ci ratio: 9.623137e-02	ci left: 1.922307e-03	ci right 2.117823e-03	k: 1655	n:820000
Cons ci ratio: 3.558088e-03	ci left: 5.957459e-01	ci right 5.978705e-01	k: 489383	n:820000
KS ci ratio: 1.735264e-01	ci left: 5.679852e-04	ci right 6.770561e-04	k: 509	n:820000
LILRB1   820000 perm   467 sec   (1756 perm/sec)   p_kst 6.207317e-04   p_cons 5.968085e-01   p_joint 2.018293e-03

Joint ci ratio: 9.565548e-02	ci left: 1.922665e-03	ci right 2.116982e-03	k: 1675	n:830000
Cons ci ratio: 3.537165e-03	ci left: 5.956738e-01	ci right 5.977857e-01	k: 495286	n:830000
KS ci ratio: 1.731876e-01	ci left: 5.634469e-04	ci right 6.714130e-04	k: 511	n:830000
LILRB1   830000 perm   478 sec   (1738 perm/sec)   p_kst 6.156627e-04   p_cons 5.967301e-01   p_joint 2.018072e-03

Joint ci ratio: 9.506174e-02	ci left: 1.924180e-03	ci right 2.117375e-03	k: 1696	n:840000
Cons ci ratio: 3.516103e-03	ci left: 5.956726e-01	ci right 5.977719e-01	k: 501247	n:840000
KS ci ratio: 1.721817e-01	ci left: 5.635734e-04	ci right 6.708713e-04	k: 517	n:840000
LILRB1   840000 perm   487 sec   (1725 perm/sec)   p_kst 6.154762e-04   p_cons 5.967226e-01   p_joint 2.019048e-03

Joint ci ratio: 9.464466e-02	ci left: 1.918770e-03	ci right 2.110531e-03	k: 1711	n:850000
Cons ci ratio: 3.496078e-03	ci left: 5.955797e-01	ci right 5.976667e-01	k: 507130	n:850000
KS ci ratio: 1.707048e-01	ci left: 5.670771e-04	ci right 6.740207e-04	k: 526	n:850000
LILRB1   850000 perm   496 sec   (1713 perm/sec)   p_kst 6.188235e-04   p_cons 5.966235e-01   p_joint 2.012941e-03

Joint ci ratio: 9.404225e-02	ci left: 1.921437e-03	ci right 2.112175e-03	k: 1733	n:860000
Cons ci ratio: 3.476115e-03	ci left: 5.955274e-01	ci right 5.976022e-01	k: 513046	n:860000
KS ci ratio: 1.699009e-01	ci left: 5.660493e-04	ci right 6.722448e-04	k: 531	n:860000
LILRB1   860000 perm   506 sec   (1699 perm/sec)   p_kst 6.174419e-04   p_cons 5.965651e-01   p_joint 2.015116e-03

Joint ci ratio: 9.321214e-02	ci left: 1.934150e-03	ci right 2.124362e-03	k: 1764	n:870000
Cons ci ratio: 3.456233e-03	ci left: 5.955119e-01	ci right 5.975748e-01	k: 518993	n:870000
KS ci ratio: 1.683259e-01	ci left: 5.705509e-04	ci right 6.764980e-04	k: 541	n:870000
LILRB1   870000 perm   517 sec   (1683 perm/sec)   p_kst 6.218391e-04   p_cons 5.965437e-01   p_joint 2.027586e-03

Joint ci ratio: 9.255868e-02	ci left: 1.939920e-03	ci right 2.129290e-03	k: 1789	n:880000
Cons ci ratio: 3.436786e-03	ci left: 5.954832e-01	ci right 5.975344e-01	k: 524928	n:880000
KS ci ratio: 1.680166e-01	ci left: 5.662443e-04	ci right 6.711790e-04	k: 543	n:880000
LILRB1   880000 perm   527 sec   (1671 perm/sec)   p_kst 6.170455e-04   p_cons 5.965091e-01   p_joint 2.032955e-03

Joint ci ratio: 9.189341e-02	ci left: 1.946664e-03	ci right 2.135253e-03	k: 1815	n:890000
Cons ci ratio: 3.417903e-03	ci left: 5.954214e-01	ci right 5.974611e-01	k: 530833	n:890000
KS ci ratio: 1.672498e-01	ci left: 5.652643e-04	ci right 6.694911e-04	k: 548	n:890000
LILRB1   890000 perm   536 sec   (1659 perm/sec)   p_kst 6.157303e-04   p_cons 5.964416e-01   p_joint 2.039326e-03

Joint ci ratio: 9.156663e-02	ci left: 1.939147e-03	ci right 2.126304e-03	k: 1828	n:900000
Cons ci ratio: 3.398803e-03	ci left: 5.954355e-01	ci right 5.974638e-01	k: 536805	n:900000
KS ci ratio: 1.661936e-01	ci left: 5.664368e-04	ci right 6.701543e-04	k: 555	n:900000
LILRB1   900000 perm   547 sec   (1644 perm/sec)   p_kst 6.166667e-04   p_cons 5.964500e-01   p_joint 2.031111e-03

Joint ci ratio: 9.109477e-02	ci left: 1.938240e-03	ci right 2.124294e-03	k: 1847	n:910000
Cons ci ratio: 3.380018e-03	ci left: 5.954494e-01	ci right 5.974665e-01	k: 542777	n:910000
KS ci ratio: 1.655992e-01	ci left: 5.644253e-04	ci right 6.673680e-04	k: 559	n:910000
LILRB1   910000 perm   557 sec   (1633 perm/sec)   p_kst 6.142857e-04   p_cons 5.964582e-01   p_joint 2.029670e-03

Joint ci ratio: 9.063012e-02	ci left: 1.937355e-03	ci right 2.122325e-03	k: 1866	n:920000
Cons ci ratio: 3.361277e-03	ci left: 5.955010e-01	ci right 5.975071e-01	k: 548784	n:920000
KS ci ratio: 1.647191e-01	ci left: 5.645424e-04	ci right 6.669050e-04	k: 565	n:920000
LILRB1   920000 perm   567 sec   (1622 perm/sec)   p_kst 6.141304e-04   p_cons 5.965043e-01   p_joint 2.028261e-03

Joint ci ratio: 9.010074e-02	ci left: 1.939644e-03	ci right 2.123694e-03	k: 1888	n:930000
Cons ci ratio: 3.343807e-03	ci left: 5.954128e-01	ci right 5.974081e-01	k: 554662	n:930000
KS ci ratio: 1.634247e-01	ci left: 5.677522e-04	ci right 6.698083e-04	k: 574	n:930000
LILRB1   930000 perm   578 sec   (1610 perm/sec)   p_kst 6.172043e-04   p_cons 5.964108e-01   p_joint 2.030108e-03

Joint ci ratio: 8.993490e-02	ci left: 1.926288e-03	ci right 2.108717e-03	k: 1895	n:940000
Cons ci ratio: 3.325525e-03	ci left: 5.954829e-01	ci right 5.974675e-01	k: 560687	n:940000
KS ci ratio: 1.631416e-01	ci left: 5.637529e-04	ci right 6.648974e-04	k: 576	n:940000
LILRB1   940000 perm   589 sec   (1597 perm/sec)   p_kst 6.127660e-04   p_cons 5.964755e-01   p_joint 2.015957e-03

Joint ci ratio: 8.951111e-02	ci left: 1.924534e-03	ci right 2.105892e-03	k: 1913	n:950000
Cons ci ratio: 3.307331e-03	ci left: 5.955821e-01	ci right 5.975562e-01	k: 566741	n:950000
KS ci ratio: 1.622999e-01	ci left: 5.638773e-04	ci right 6.644712e-04	k: 582	n:950000
LILRB1   950000 perm   600 sec   (1584 perm/sec)   p_kst 6.126316e-04   p_cons 5.965695e-01   p_joint 2.013684e-03

Joint ci ratio: 8.900098e-02	ci left: 1.926892e-03	ci right 2.107384e-03	k: 1935	n:960000
Cons ci ratio: 3.290058e-03	ci left: 5.955876e-01	ci right 5.975514e-01	k: 572707	n:960000
KS ci ratio: 1.610612e-01	ci left: 5.669994e-04	ci right 6.673035e-04	k: 591	n:960000
LILRB1   960000 perm   610 sec   (1573 perm/sec)   p_kst 6.156250e-04   p_cons 5.965698e-01   p_joint 2.015625e-03

Joint ci ratio: 8.854481e-02	ci left: 1.927188e-03	ci right 2.106735e-03	k: 1955	n:970000
Cons ci ratio: 3.273270e-03	ci left: 5.955610e-01	ci right 5.975147e-01	k: 578642	n:970000
KS ci ratio: 1.599837e-01	ci left: 5.690702e-04	ci right 6.690025e-04	k: 599	n:970000
LILRB1   970000 perm   622 sec   (1560 perm/sec)   p_kst 6.175258e-04   p_cons 5.965381e-01   p_joint 2.015464e-03

Joint ci ratio: 8.807325e-02	ci left: 1.928478e-03	ci right 2.107139e-03	k: 1976	n:980000
Cons ci ratio: 3.256675e-03	ci left: 5.955442e-01	ci right 5.974879e-01	k: 584586	n:980000
KS ci ratio: 1.594533e-01	ci left: 5.671818e-04	ci right 6.664206e-04	k: 603	n:980000
LILRB1   980000 perm   632 sec   (1550 perm/sec)   p_kst 6.153061e-04   p_cons 5.965163e-01   p_joint 2.016327e-03

Joint ci ratio: 8.752140e-02	ci left: 1.933697e-03	ci right 2.111661e-03	k: 2001	n:990000
Cons ci ratio: 3.240825e-03	ci left: 5.954540e-01	ci right 5.973879e-01	k: 590457	n:990000
KS ci ratio: 1.581492e-01	ci left: 5.711524e-04	ci right 6.701911e-04	k: 613	n:990000
LILRB1   990000 perm   643 sec   (1539 perm/sec)   p_kst 6.191919e-04   p_cons 5.964212e-01   p_joint 2.021212e-03

Joint ci ratio: 8.710907e-02	ci left: 1.932945e-03	ci right 2.109959e-03	k: 2020	n:1000000
Cons ci ratio: 3.224468e-03	ci left: 5.954756e-01	ci right 5.973998e-01	k: 596438	n:1000000
KS ci ratio: 1.577645e-01	ci left: 5.683222e-04	ci right 6.666077e-04	k: 616	n:1000000
LILRB1   1000000 perm   655 sec   (1527 perm/sec)   p_kst 6.160000e-04   p_cons 5.964380e-01   p_joint 2.020000e-03

Joint ci ratio: 8.680919e-02	ci left: 1.927366e-03	ci right 2.103232e-03	k: 2034	n:1010000
Cons ci ratio: 3.208211e-03	ci left: 5.955187e-01	ci right 5.974332e-01	k: 602441	n:1010000
KS ci ratio: 1.571292e-01	ci left: 5.674507e-04	ci right 6.651531e-04	k: 621	n:1010000
LILRB1   1010000 perm   666 sec   (1517 perm/sec)   p_kst 6.148515e-04   p_cons 5.964762e-01   p_joint 2.013861e-03

Joint ci ratio: 8.630161e-02	ci left: 1.931491e-03	ci right 2.106650e-03	k: 2058	n:1020000
Cons ci ratio: 3.192184e-03	ci left: 5.955628e-01	ci right 5.974680e-01	k: 608446	n:1020000
KS ci ratio: 1.558808e-01	ci left: 5.713075e-04	ci right 6.688194e-04	k: 631	n:1020000
LILRB1   1020000 perm   677 sec   (1507 perm/sec)   p_kst 6.186275e-04   p_cons 5.965157e-01   p_joint 2.017647e-03

Joint ci ratio: 8.578220e-02	ci left: 1.936488e-03	ci right 2.110991e-03	k: 2083	n:1030000
Cons ci ratio: 3.176869e-03	ci left: 5.955343e-01	ci right 5.974302e-01	k: 614377	n:1030000
KS ci ratio: 1.551461e-01	ci left: 5.713594e-04	ci right 6.683778e-04	k: 637	n:1030000
LILRB1   1030000 perm   688 sec   (1498 perm/sec)   p_kst 6.184466e-04   p_cons 5.964825e-01   p_joint 2.022330e-03

Joint ci ratio: 8.527206e-02	ci left: 1.941393e-03	ci right 2.115245e-03	k: 2108	n:1040000
Cons ci ratio: 3.161507e-03	ci left: 5.955467e-01	ci right 5.974335e-01	k: 620350	n:1040000
KS ci ratio: 1.541824e-01	ci left: 5.732602e-04	ci right 6.699408e-04	k: 645	n:1040000
LILRB1   1040000 perm   699 sec   (1487 perm/sec)   p_kst 6.201923e-04   p_cons 5.964904e-01   p_joint 2.026923e-03

Joint ci ratio: 8.491058e-02	ci left: 1.939681e-03	ci right 2.112608e-03	k: 2126	n:1050000
Cons ci ratio: 3.146858e-03	ci left: 5.954837e-01	ci right 5.973615e-01	k: 626244	n:1050000
KS ci ratio: 1.538258e-01	ci left: 5.705476e-04	ci right 6.665276e-04	k: 648	n:1050000
LILRB1   1050000 perm   711 sec   (1477 perm/sec)   p_kst 6.171429e-04   p_cons 5.964229e-01   p_joint 2.024762e-03

Joint ci ratio: 8.449446e-02	ci left: 1.940774e-03	ci right 2.112908e-03	k: 2147	n:1060000
Cons ci ratio: 3.131993e-03	ci left: 5.954860e-01	ci right 5.973549e-01	k: 632206	n:1060000
KS ci ratio: 1.530028e-01	ci left: 5.715153e-04	ci right 6.670967e-04	k: 655	n:1060000
LILRB1   1060000 perm   722 sec   (1468 perm/sec)   p_kst 6.179245e-04   p_cons 5.964208e-01   p_joint 2.025472e-03

Joint ci ratio: 8.412328e-02	ci left: 1.940019e-03	ci right 2.111293e-03	k: 2166	n:1070000
Cons ci ratio: 3.117342e-03	ci left: 5.954874e-01	ci right 5.973476e-01	k: 638167	n:1070000
KS ci ratio: 1.523079e-01	ci left: 5.715673e-04	ci right 6.666837e-04	k: 661	n:1070000
LILRB1   1070000 perm   733 sec   (1459 perm/sec)   p_kst 6.177570e-04   p_cons 5.964178e-01   p_joint 2.024299e-03

Joint ci ratio: 8.377615e-02	ci left: 1.938372e-03	ci right 2.108760e-03	k: 2184	n:1080000
Cons ci ratio: 3.102937e-03	ci left: 5.954823e-01	ci right 5.973338e-01	k: 644121	n:1080000
KS ci ratio: 1.517361e-01	ci left: 5.707286e-04	ci right 6.653163e-04	k: 666	n:1080000
LILRB1   1080000 perm   745 sec   (1451 perm/sec)   p_kst 6.166667e-04   p_cons 5.964083e-01   p_joint 2.022222e-03

Joint ci ratio: 8.350928e-02	ci left: 1.933164e-03	ci right 2.102527e-03	k: 2198	n:1090000
Cons ci ratio: 3.088106e-03	ci left: 5.955746e-01	ci right 5.974175e-01	k: 650181	n:1090000
KS ci ratio: 1.510582e-01	ci left: 5.707886e-04	ci right 6.649254e-04	k: 672	n:1090000
LILRB1   1090000 perm   757 sec   (1441 perm/sec)   p_kst 6.165138e-04   p_cons 5.964963e-01   p_joint 2.016514e-03

Joint ci ratio: 8.307584e-02	ci left: 1.936064e-03	ci right 2.104757e-03	k: 2221	n:1100000
Cons ci ratio: 3.073927e-03	ci left: 5.955961e-01	ci right 5.974306e-01	k: 656165	n:1100000
KS ci ratio: 1.498383e-01	ci left: 5.752233e-04	ci right 6.692567e-04	k: 683	n:1100000
LILRB1   1100000 perm   768 sec   (1432 perm/sec)   p_kst 6.209091e-04   p_cons 5.965136e-01   p_joint 2.019091e-03

Joint ci ratio: 8.275998e-02	ci left: 1.933619e-03	ci right 2.101429e-03	k: 2238	n:1110000
Cons ci ratio: 3.059838e-03	ci left: 5.956335e-01	ci right 5.974597e-01	k: 662167	n:1110000
KS ci ratio: 1.494022e-01	ci left: 5.735097e-04	ci right 6.669658e-04	k: 687	n:1110000
LILRB1   1110000 perm   780 sec   (1422 perm/sec)   p_kst 6.189189e-04   p_cons 5.965468e-01   p_joint 2.016216e-03

Joint ci ratio: 8.237455e-02	ci left: 1.934718e-03	ci right 2.101803e-03	k: 2259	n:1120000
Cons ci ratio: 3.046252e-03	ci left: 5.956211e-01	ci right 5.974391e-01	k: 668114	n:1120000
KS ci ratio: 1.486479e-01	ci left: 5.744061e-04	ci right 6.674936e-04	k: 694	n:1120000
LILRB1   1120000 perm   792 sec   (1414 perm/sec)   p_kst 6.196429e-04   p_cons 5.965304e-01   p_joint 2.016964e-03

Joint ci ratio: 8.204853e-02	ci left: 1.933198e-03	ci right 2.099459e-03	k: 2277	n:1130000
Cons ci ratio: 3.033324e-03	ci left: 5.955328e-01	ci right 5.973428e-01	k: 673975	n:1130000
KS ci ratio: 1.483283e-01	ci left: 5.718790e-04	ci right 6.643401e-04	k: 697	n:1130000
LILRB1   1130000 perm   804 sec   (1405 perm/sec)   p_kst 6.168142e-04   p_cons 5.964381e-01   p_joint 2.015044e-03

Joint ci ratio: 8.144251e-02	ci left: 1.945456e-03	ci right 2.111477e-03	k: 2311	n:1140000
Cons ci ratio: 3.019955e-03	ci left: 5.955426e-01	ci right 5.973447e-01	k: 679946	n:1140000
KS ci ratio: 1.474854e-01	ci left: 5.736204e-04	ci right 6.657896e-04	k: 705	n:1140000
LILRB1   1140000 perm   817 sec   (1395 perm/sec)   p_kst 6.184211e-04   p_cons 5.964439e-01   p_joint 2.027193e-03

Joint ci ratio: 8.123226e-02	ci left: 1.938761e-03	ci right 2.103763e-03	k: 2323	n:1150000
Cons ci ratio: 3.006820e-03	ci left: 5.955426e-01	ci right 5.973369e-01	k: 685906	n:1150000
KS ci ratio: 1.469660e-01	ci left: 5.728200e-04	ci right 6.645080e-04	k: 710	n:1150000
LILRB1   1150000 perm   830 sec   (1386 perm/sec)   p_kst 6.173913e-04   p_cons 5.964400e-01   p_joint 2.020000e-03

Joint ci ratio: 8.083316e-02	ci left: 1.941473e-03	ci right 2.105857e-03	k: 2346	n:1160000
Cons ci ratio: 2.993893e-03	ci left: 5.955367e-01	ci right 5.973232e-01	k: 691859	n:1160000
KS ci ratio: 1.460444e-01	ci left: 5.753562e-04	ci right 6.668223e-04	k: 719	n:1160000
LILRB1   1160000 perm   842 sec   (1378 perm/sec)   p_kst 6.198276e-04   p_cons 5.964302e-01   p_joint 2.022414e-03

Joint ci ratio: 8.055918e-02	ci left: 1.938279e-03	ci right 2.101809e-03	k: 2362	n:1170000
Cons ci ratio: 2.981115e-03	ci left: 5.955334e-01	ci right 5.973123e-01	k: 697815	n:1170000
KS ci ratio: 1.454396e-01	ci left: 5.753798e-04	ci right 6.664380e-04	k: 725	n:1170000
LILRB1   1170000 perm   855 sec   (1369 perm/sec)   p_kst 6.196581e-04   p_cons 5.964231e-01   p_joint 2.018803e-03

Joint ci ratio: 8.018670e-02	ci left: 1.940122e-03	ci right 2.103016e-03	k: 2384	n:1180000
Cons ci ratio: 2.968886e-03	ci left: 5.954675e-01	ci right 5.972388e-01	k: 703697	n:1180000
KS ci ratio: 1.444480e-01	ci left: 5.786711e-04	ci right 6.695718e-04	k: 735	n:1180000
LILRB1   1180000 perm   867 sec   (1361 perm/sec)   p_kst 6.228814e-04   p_cons 5.963534e-01   p_joint 2.020339e-03

Joint ci ratio: 7.988589e-02	ci left: 1.938642e-03	ci right 2.100772e-03	k: 2402	n:1190000
Cons ci ratio: 2.955934e-03	ci left: 5.955448e-01	ci right 5.973086e-01	k: 709748	n:1190000
KS ci ratio: 1.441547e-01	ci left: 5.762382e-04	ci right 6.665572e-04	k: 738	n:1190000
LILRB1   1190000 perm   880 sec   (1353 perm/sec)   p_kst 6.201681e-04   p_cons 5.964269e-01   p_joint 2.018487e-03

Joint ci ratio: 7.957197e-02	ci left: 1.938004e-03	ci right 2.099415e-03	k: 2421	n:1200000
Cons ci ratio: 2.943853e-03	ci left: 5.955057e-01	ci right 5.972622e-01	k: 715661	n:1200000
KS ci ratio: 1.434767e-01	ci left: 5.770597e-04	ci right 6.670456e-04	k: 745	n:1200000
LILRB1   1200000 perm   892 sec   (1345 perm/sec)   p_kst 6.208333e-04   p_cons 5.963842e-01   p_joint 2.017500e-03

Joint ci ratio: 7.931057e-02	ci left: 1.934948e-03	ci right 2.095550e-03	k: 2437	n:1210000
Cons ci ratio: 2.931848e-03	ci left: 5.954789e-01	ci right 5.972281e-01	k: 721588	n:1210000
KS ci ratio: 1.431893e-01	ci left: 5.746810e-04	ci right 6.641011e-04	k: 748	n:1210000
LILRB1   1210000 perm   906 sec   (1336 perm/sec)   p_kst 6.181818e-04   p_cons 5.963537e-01   p_joint 2.014050e-03

Joint ci ratio: 7.900336e-02	ci left: 1.934353e-03	ci right 2.094255e-03	k: 2456	n:1220000
Cons ci ratio: 2.920198e-03	ci left: 5.954181e-01	ci right 5.971602e-01	k: 727473	n:1220000
KS ci ratio: 1.427138e-01	ci left: 5.739222e-04	ci right 6.629025e-04	k: 753	n:1220000
LILRB1   1220000 perm   919 sec   (1328 perm/sec)   p_kst 6.172131e-04   p_cons 5.962893e-01   p_joint 2.013115e-03

Joint ci ratio: 7.882739e-02	ci left: 1.927393e-03	ci right 2.086349e-03	k: 2467	n:1230000
Cons ci ratio: 2.908224e-03	ci left: 5.954347e-01	ci right 5.971697e-01	k: 733452	n:1230000
KS ci ratio: 1.423369e-01	ci left: 5.723922e-04	ci right 6.608810e-04	k: 757	n:1230000
LILRB1   1230000 perm   932 sec   (1320 perm/sec)   p_kst 6.154472e-04   p_cons 5.963024e-01   p_joint 2.005691e-03

Joint ci ratio: 7.854156e-02	ci left: 1.926080e-03	ci right 2.084325e-03	k: 2485	n:1240000
Cons ci ratio: 2.896925e-03	ci left: 5.953632e-01	ci right 5.970912e-01	k: 739322	n:1240000
KS ci ratio: 1.415915e-01	ci left: 5.739987e-04	ci right 6.622319e-04	k: 765	n:1240000
LILRB1   1240000 perm   945 sec   (1312 perm/sec)   p_kst 6.169355e-04   p_cons 5.962274e-01   p_joint 2.004032e-03

Joint ci ratio: 7.821189e-02	ci left: 1.927142e-03	ci right 2.084780e-03	k: 2506	n:1250000
Cons ci ratio: 2.885133e-03	ci left: 5.953969e-01	ci right 5.971179e-01	k: 745322	n:1250000
KS ci ratio: 1.411318e-01	ci left: 5.732652e-04	ci right 6.610755e-04	k: 770	n:1250000
LILRB1   1250000 perm   959 sec   (1303 perm/sec)   p_kst 6.160000e-04   p_cons 5.962576e-01   p_joint 2.004800e-03

Joint ci ratio: 7.784007e-02	ci left: 1.930523e-03	ci right 2.087653e-03	k: 2530	n:1260000
Cons ci ratio: 2.873963e-03	ci left: 5.953498e-01	ci right 5.970640e-01	k: 751221	n:1260000
KS ci ratio: 1.405858e-01	ci left: 5.733096e-04	ci right 6.607585e-04	k: 776	n:1260000
LILRB1   1260000 perm   973 sec   (1295 perm/sec)   p_kst 6.158730e-04   p_cons 5.962071e-01   p_joint 2.007937e-03

Joint ci ratio: 7.747349e-02	ci left: 1.933853e-03	ci right 2.090479e-03	k: 2554	n:1270000
Cons ci ratio: 2.862659e-03	ci left: 5.953476e-01	ci right 5.970551e-01	k: 757176	n:1270000
KS ci ratio: 1.398675e-01	ci left: 5.748736e-04	ci right 6.620757e-04	k: 784	n:1270000
LILRB1   1270000 perm   986 sec   (1288 perm/sec)   p_kst 6.173228e-04   p_cons 5.962016e-01   p_joint 2.011024e-03

Joint ci ratio: 7.727736e-02	ci left: 1.928704e-03	ci right 2.084500e-03	k: 2567	n:1280000
Cons ci ratio: 2.851797e-03	ci left: 5.952931e-01	ci right 5.969939e-01	k: 763064	n:1280000
KS ci ratio: 1.394242e-01	ci left: 5.741521e-04	ci right 6.609458e-04	k: 789	n:1280000
LILRB1   1280000 perm   999 sec   (1281 perm/sec)   p_kst 6.164062e-04   p_cons 5.961437e-01   p_joint 2.005469e-03

Joint ci ratio: 7.688893e-02	ci left: 1.933520e-03	ci right 2.088884e-03	k: 2593	n:1290000
Cons ci ratio: 2.840998e-03	ci left: 5.952496e-01	ci right 5.969438e-01	k: 768965	n:1290000
KS ci ratio: 1.387235e-01	ci left: 5.756871e-04	ci right 6.622394e-04	k: 797	n:1290000
LILRB1   1290000 perm   1013 sec   (1273 perm/sec)   p_kst 6.178295e-04   p_cons 5.960969e-01   p_joint 2.010078e-03

Joint ci ratio: 7.652093e-02	ci left: 1.937509e-03	ci right 2.092416e-03	k: 2618	n:1300000
Cons ci ratio: 2.829969e-03	ci left: 5.952667e-01	ci right 5.969544e-01	k: 774944	n:1300000
KS ci ratio: 1.380332e-01	ci left: 5.771996e-04	ci right 6.635120e-04	k: 805	n:1300000
LILRB1   1300000 perm   1029 sec   (1264 perm/sec)   p_kst 6.192308e-04   p_cons 5.961108e-01   p_joint 2.013846e-03

Joint ci ratio: 7.618704e-02	ci left: 1.939941e-03	ci right 2.094335e-03	k: 2641	n:1310000
Cons ci ratio: 2.818942e-03	ci left: 5.953050e-01	ci right 5.969862e-01	k: 780951	n:1310000
KS ci ratio: 1.373532e-01	ci left: 5.786900e-04	ci right 6.647641e-04	k: 813	n:1310000
LILRB1   1310000 perm   1043 sec   (1256 perm/sec)   p_kst 6.206107e-04   p_cons 5.961458e-01   p_joint 2.016031e-03

Joint ci ratio: 7.588602e-02	ci left: 1.940851e-03	ci right 2.094681e-03	k: 2662	n:1320000
Cons ci ratio: 2.808414e-03	ci left: 5.952790e-01	ci right 5.969539e-01	k: 786874	n:1320000
KS ci ratio: 1.366831e-01	ci left: 5.801589e-04	ci right 6.659962e-04	k: 821	n:1320000
LILRB1   1320000 perm   1057 sec   (1249 perm/sec)   p_kst 6.219697e-04   p_cons 5.961167e-01   p_joint 2.016667e-03

Joint ci ratio: 7.557444e-02	ci left: 1.942486e-03	ci right 2.095786e-03	k: 2684	n:1330000
Cons ci ratio: 2.797325e-03	ci left: 5.953701e-01	ci right 5.970386e-01	k: 792952	n:1330000
KS ci ratio: 1.361870e-01	ci left: 5.801541e-04	ci right 6.656538e-04	k: 827	n:1330000
LILRB1   1330000 perm   1071 sec   (1242 perm/sec)   p_kst 6.218045e-04   p_cons 5.962045e-01   p_joint 2.018045e-03

Joint ci ratio: 7.514160e-02	ci left: 1.950689e-03	ci right 2.103715e-03	k: 2715	n:1340000
Cons ci ratio: 2.787054e-03	ci left: 5.953410e-01	ci right 5.970033e-01	k: 798871	n:1340000
KS ci ratio: 1.354526e-01	ci left: 5.823128e-04	ci right 6.676307e-04	k: 836	n:1340000
LILRB1   1340000 perm   1085 sec   (1235 perm/sec)   p_kst 6.238806e-04   p_cons 5.961724e-01   p_joint 2.026119e-03

Joint ci ratio: 7.481169e-02	ci left: 1.953684e-03	ci right 2.106243e-03	k: 2739	n:1350000
Cons ci ratio: 2.776831e-03	ci left: 5.953236e-01	ci right 5.969797e-01	k: 804805	n:1350000
KS ci ratio: 1.348897e-01	ci left: 5.830093e-04	ci right 6.680457e-04	k: 843	n:1350000
LILRB1   1350000 perm   1099 sec   (1228 perm/sec)   p_kst 6.244444e-04   p_cons 5.961519e-01   p_joint 2.028889e-03

Joint ci ratio: 7.452662e-02	ci left: 1.954471e-03	ci right 2.106485e-03	k: 2760	n:1360000
Cons ci ratio: 2.766643e-03	ci left: 5.953196e-01	ci right 5.969697e-01	k: 810757	n:1360000
KS ci ratio: 1.339406e-01	ci left: 5.872493e-04	ci right 6.722536e-04	k: 855	n:1360000
LILRB1   1360000 perm   1114 sec   (1220 perm/sec)   p_kst 6.286765e-04   p_cons 5.961449e-01   p_joint 2.029412e-03

Joint ci ratio: 7.423142e-02	ci left: 1.955965e-03	ci right 2.107466e-03	k: 2782	n:1370000
Cons ci ratio: 2.756492e-03	ci left: 5.953289e-01	ci right 5.969729e-01	k: 816727	n:1370000
KS ci ratio: 1.335512e-01	ci left: 5.864904e-04	ci right 6.711183e-04	k: 860	n:1370000
LILRB1   1370000 perm   1130 sec   (1212 perm/sec)   p_kst 6.277372e-04   p_cons 5.961511e-01   p_joint 2.030657e-03

Joint ci ratio: 7.383427e-02	ci left: 1.963128e-03	ci right 2.114336e-03	k: 2812	n:1380000
Cons ci ratio: 2.746480e-03	ci left: 5.953330e-01	ci right 5.969710e-01	k: 822690	n:1380000
KS ci ratio: 1.326299e-01	ci left: 5.906466e-04	ci right 6.752400e-04	k: 872	n:1380000
LILRB1   1380000 perm   1144 sec   (1206 perm/sec)   p_kst 6.318841e-04   p_cons 5.961522e-01   p_joint 2.037681e-03

Joint ci ratio: 7.358621e-02	ci left: 1.962422e-03	ci right 2.113046e-03	k: 2831	n:1390000
Cons ci ratio: 2.736516e-03	ci left: 5.953478e-01	ci right 5.969799e-01	k: 828668	n:1390000
KS ci ratio: 1.318765e-01	ci left: 5.933537e-04	ci right 6.778143e-04	k: 882	n:1390000
LILRB1   1390000 perm   1159 sec   (1200 perm/sec)   p_kst 6.345324e-04   p_cons 5.961640e-01   p_joint 2.036691e-03

Joint ci ratio: 7.330200e-02	ci left: 1.963831e-03	ci right 2.113956e-03	k: 2853	n:1400000
Cons ci ratio: 2.726533e-03	ci left: 5.953845e-01	ci right 5.970108e-01	k: 834677	n:1400000
KS ci ratio: 1.312094e-01	ci left: 5.953325e-04	ci right 6.796127e-04	k: 891	n:1400000
LILRB1   1400000 perm   1174 sec   (1193 perm/sec)   p_kst 6.364286e-04   p_cons 5.961979e-01   p_joint 2.037857e-03

Joint ci ratio: 7.305925e-02	ci left: 1.963131e-03	ci right 2.112685e-03	k: 2872	n:1410000
Cons ci ratio: 2.717012e-03	ci left: 5.953584e-01	ci right 5.969788e-01	k: 840598	n:1410000
KS ci ratio: 1.305524e-01	ci left: 5.972843e-04	ci right 6.813846e-04	k: 900	n:1410000
LILRB1   1410000 perm   1189 sec   (1186 perm/sec)   p_kst 6.382979e-04   p_cons 5.961688e-01   p_joint 2.036879e-03

Joint ci ratio: 7.284414e-02	ci left: 1.961060e-03	ci right 2.109997e-03	k: 2889	n:1420000
Cons ci ratio: 2.707549e-03	ci left: 5.953396e-01	ci right 5.969544e-01	k: 846529	n:1420000
KS ci ratio: 1.301917e-01	ci left: 5.964843e-04	ci right 6.802220e-04	k: 905	n:1420000
LILRB1   1420000 perm   1204 sec   (1179 perm/sec)   p_kst 6.373239e-04   p_cons 5.961472e-01   p_joint 2.034507e-03

Joint ci ratio: 7.265596e-02	ci left: 1.957645e-03	ci right 2.105922e-03	k: 2904	n:1430000
Cons ci ratio: 2.698071e-03	ci left: 5.953414e-01	ci right 5.969505e-01	k: 852489	n:1430000
KS ci ratio: 1.299768e-01	ci left: 5.943427e-04	ci right 6.776314e-04	k: 908	n:1430000
LILRB1   1430000 perm   1219 sec   (1173 perm/sec)   p_kst 6.349650e-04   p_cons 5.961462e-01   p_joint 2.030769e-03

Joint ci ratio: 7.229578e-02	ci left: 1.963824e-03	ci right 2.111801e-03	k: 2933	n:1440000
Cons ci ratio: 2.688747e-03	ci left: 5.953335e-01	ci right 5.969370e-01	k: 858435	n:1440000
KS ci ratio: 1.294792e-01	ci left: 5.949187e-04	ci right 6.779444e-04	k: 915	n:1440000
LILRB1   1440000 perm   1233 sec   (1167 perm/sec)   p_kst 6.354167e-04   p_cons 5.961354e-01   p_joint 2.036806e-03

Joint ci ratio: 7.205064e-02	ci left: 1.963825e-03	ci right 2.111279e-03	k: 2953	n:1450000
Cons ci ratio: 2.679322e-03	ci left: 5.953608e-01	ci right 5.969588e-01	k: 864432	n:1450000
KS ci ratio: 1.289174e-01	ci left: 5.961548e-04	ci right 6.789643e-04	k: 923	n:1450000
LILRB1   1450000 perm   1249 sec   (1161 perm/sec)   p_kst 6.365517e-04   p_cons 5.961600e-01   p_joint 2.036552e-03

Joint ci ratio: 7.179588e-02	ci left: 1.964499e-03	ci right 2.111461e-03	k: 2974	n:1460000
Cons ci ratio: 2.670171e-03	ci left: 5.953563e-01	ci right 5.969488e-01	k: 870383	n:1460000
KS ci ratio: 1.282940e-01	ci left: 5.980376e-04	ci right 6.806764e-04	k: 932	n:1460000
LILRB1   1460000 perm   1264 sec   (1155 perm/sec)   p_kst 6.383562e-04   p_cons 5.961527e-01   p_joint 2.036986e-03

Joint ci ratio: 7.162770e-02	ci left: 1.960488e-03	ci right 2.106792e-03	k: 2988	n:1470000
Cons ci ratio: 2.660880e-03	ci left: 5.953940e-01	ci right 5.969811e-01	k: 876396	n:1470000
KS ci ratio: 1.279517e-01	ci left: 5.972617e-04	ci right 6.795563e-04	k: 937	n:1470000
LILRB1   1470000 perm   1279 sec   (1150 perm/sec)   p_kst 6.374150e-04   p_cons 5.961878e-01   p_joint 2.032653e-03

Joint ci ratio: 7.123523e-02	ci left: 1.969140e-03	ci right 2.115252e-03	k: 3021	n:1480000
Cons ci ratio: 2.651916e-03	ci left: 5.953894e-01	ci right 5.969711e-01	k: 882347	n:1480000
KS ci ratio: 1.270070e-01	ci left: 6.023840e-04	ci right 6.847256e-04	k: 951	n:1480000
LILRB1   1480000 perm   1294 sec   (1143 perm/sec)   p_kst 6.425676e-04   p_cons 5.961804e-01   p_joint 2.041216e-03

Joint ci ratio: 7.101238e-02	ci left: 1.968450e-03	ci right 2.114034e-03	k: 3040	n:1490000
Cons ci ratio: 2.642913e-03	ci left: 5.954083e-01	ci right 5.969846e-01	k: 888333	n:1490000
KS ci ratio: 1.265426e-01	ci left: 6.028902e-04	ci right 6.849770e-04	k: 958	n:1490000
LILRB1   1490000 perm   1310 sec   (1138 perm/sec)   p_kst 6.429530e-04   p_cons 5.961966e-01   p_joint 2.040268e-03

Joint ci ratio: 7.082641e-02	ci left: 1.965804e-03	ci right 2.110796e-03	k: 3056	n:1500000
Cons ci ratio: 2.634092e-03	ci left: 5.954103e-01	ci right 5.969814e-01	k: 894294	n:1500000
KS ci ratio: 1.260833e-01	ci left: 6.033901e-04	ci right 6.852245e-04	k: 965	n:1500000
LILRB1   1500000 perm   1325 sec   (1132 perm/sec)   p_kst 6.433333e-04   p_cons 5.961960e-01   p_joint 2.037333e-03

Joint ci ratio: 7.053846e-02	ci left: 1.969049e-03	ci right 2.113666e-03	k: 3081	n:1510000
Cons ci ratio: 2.625387e-03	ci left: 5.954070e-01	ci right 5.969728e-01	k: 900247	n:1510000
KS ci ratio: 1.253713e-01	ci left: 6.064499e-04	ci right 6.882003e-04	k: 976	n:1510000
LILRB1   1510000 perm   1342 sec   (1125 perm/sec)   p_kst 6.463576e-04   p_cons 5.961901e-01   p_joint 2.040397e-03

Joint ci ratio: 7.039033e-02	ci left: 1.964497e-03	ci right 2.108464e-03	k: 3094	n:1520000
Cons ci ratio: 2.616494e-03	ci left: 5.954543e-01	ci right 5.970150e-01	k: 906277	n:1520000
KS ci ratio: 1.249881e-01	ci left: 6.062838e-04	ci right 6.877436e-04	k: 982	n:1520000
LILRB1   1520000 perm   1358 sec   (1119 perm/sec)   p_kst 6.460526e-04   p_cons 5.962349e-01   p_joint 2.035526e-03

Joint ci ratio: 7.023181e-02	ci left: 1.960646e-03	ci right 2.103994e-03	k: 3108	n:1530000
Cons ci ratio: 2.607704e-03	ci left: 5.954985e-01	ci right 5.970541e-01	k: 912303	n:1530000
KS ci ratio: 1.247347e-01	ci left: 6.048539e-04	ci right 6.859445e-04	k: 986	n:1530000
LILRB1   1530000 perm   1374 sec   (1114 perm/sec)   p_kst 6.444444e-04   p_cons 5.962765e-01   p_joint 2.031373e-03

Joint ci ratio: 7.005189e-02	ci left: 1.958122e-03	ci right 2.100904e-03	k: 3124	n:1540000
Cons ci ratio: 2.599527e-03	ci left: 5.954447e-01	ci right 5.969952e-01	k: 918179	n:1540000
KS ci ratio: 1.243573e-01	ci left: 6.047010e-04	ci right 6.855078e-04	k: 992	n:1540000
LILRB1   1540000 perm   1389 sec   (1108 perm/sec)   p_kst 6.441558e-04   p_cons 5.962201e-01   p_joint 2.028571e-03

Joint ci ratio: 6.975106e-02	ci left: 1.962604e-03	ci right 2.105073e-03	k: 3151	n:1550000
Cons ci ratio: 2.591226e-03	ci left: 5.954290e-01	ci right 5.969745e-01	k: 924113	n:1550000
KS ci ratio: 1.238593e-01	ci left: 6.058008e-04	ci right 6.864066e-04	k: 1000	n:1550000
LILRB1   1550000 perm   1407 sec   (1102 perm/sec)   p_kst 6.451613e-04   p_cons 5.962019e-01   p_joint 2.032903e-03

Joint ci ratio: 6.950887e-02	ci left: 1.963880e-03	ci right 2.105927e-03	k: 3173	n:1560000
Cons ci ratio: 2.583087e-03	ci left: 5.953981e-01	ci right 5.969387e-01	k: 930023	n:1560000
KS ci ratio: 1.232451e-01	ci left: 6.081296e-04	ci right 6.886147e-04	k: 1010	n:1560000
LILRB1   1560000 perm   1423 sec   (1096 perm/sec)   p_kst 6.474359e-04   p_cons 5.961686e-01   p_joint 2.033974e-03

Joint ci ratio: 6.932354e-02	ci left: 1.962011e-03	ci right 2.103530e-03	k: 3190	n:1570000
Cons ci ratio: 2.575071e-03	ci left: 5.953587e-01	ci right 5.968944e-01	k: 935919	n:1570000
KS ci ratio: 1.230021e-01	ci left: 6.067255e-04	ci right 6.868549e-04	k: 1014	n:1570000
LILRB1   1570000 perm   1441 sec   (1090 perm/sec)   p_kst 6.458599e-04   p_cons 5.961268e-01   p_joint 2.031847e-03

Joint ci ratio: 6.909654e-02	ci left: 1.962655e-03	ci right 2.103737e-03	k: 3211	n:1580000
Cons ci ratio: 2.566974e-03	ci left: 5.953490e-01	ci right 5.968798e-01	k: 941861	n:1580000
KS ci ratio: 1.225801e-01	ci left: 6.071797e-04	ci right 6.870741e-04	k: 1021	n:1580000
LILRB1   1580000 perm   1457 sec   (1085 perm/sec)   p_kst 6.462025e-04   p_cons 5.961146e-01   p_joint 2.032278e-03

Joint ci ratio: 6.892517e-02	ci left: 1.960200e-03	ci right 2.100743e-03	k: 3227	n:1590000
Cons ci ratio: 2.558976e-03	ci left: 5.953349e-01	ci right 5.968609e-01	k: 947796	n:1590000
KS ci ratio: 1.220438e-01	ci left: 6.088482e-04	ci right 6.885863e-04	k: 1030	n:1590000
LILRB1   1590000 perm   1473 sec   (1079 perm/sec)   p_kst 6.477987e-04   p_cons 5.960981e-01   p_joint 2.029560e-03

Joint ci ratio: 6.870205e-02	ci left: 1.960848e-03	ci right 2.100964e-03	k: 3248	n:1600000
Cons ci ratio: 2.550904e-03	ci left: 5.953492e-01	ci right 5.968704e-01	k: 953776	n:1600000
KS ci ratio: 1.215145e-01	ci left: 6.104966e-04	ci right 6.900789e-04	k: 1039	n:1600000
LILRB1   1600000 perm   1489 sec   (1074 perm/sec)   p_kst 6.493750e-04   p_cons 5.961100e-01   p_joint 2.030000e-03

Joint ci ratio: 6.852308e-02	ci left: 1.959047e-03	ci right 2.098655e-03	k: 3265	n:1610000
Cons ci ratio: 2.543137e-03	ci left: 5.953198e-01	ci right 5.968363e-01	k: 959686	n:1610000
KS ci ratio: 1.212816e-01	ci left: 6.091137e-04	ci right 6.883526e-04	k: 1043	n:1610000
LILRB1   1610000 perm   1505 sec   (1070 perm/sec)   p_kst 6.478261e-04   p_cons 5.960783e-01   p_joint 2.027950e-03

Joint ci ratio: 6.829342e-02	ci left: 1.960302e-03	ci right 2.099513e-03	k: 3287	n:1620000
Cons ci ratio: 2.535165e-03	ci left: 5.953433e-01	ci right 5.968551e-01	k: 965681	n:1620000
KS ci ratio: 1.204762e-01	ci left: 6.137345e-04	ci right 6.930066e-04	k: 1057	n:1620000
LILRB1   1620000 perm   1523 sec   (1064 perm/sec)   p_kst 6.524691e-04   p_cons 5.960994e-01   p_joint 2.029012e-03

Joint ci ratio: 6.807635e-02	ci left: 1.960939e-03	ci right 2.099735e-03	k: 3308	n:1630000
Cons ci ratio: 2.527193e-03	ci left: 5.953806e-01	ci right 5.968878e-01	k: 971699	n:1630000
KS ci ratio: 1.200232e-01	ci left: 6.147296e-04	ci right 6.938105e-04	k: 1065	n:1630000
LILRB1   1630000 perm   1539 sec   (1059 perm/sec)   p_kst 6.533742e-04   p_cons 5.961344e-01   p_joint 2.029448e-03

Joint ci ratio: 6.783073e-02	ci left: 1.963368e-03	ci right 2.101815e-03	k: 3332	n:1640000
Cons ci ratio: 2.519506e-03	ci left: 5.953772e-01	ci right 5.968798e-01	k: 977651	n:1640000
KS ci ratio: 1.195197e-01	ci left: 6.163047e-04	ci right 6.952320e-04	k: 1074	n:1640000
LILRB1   1640000 perm   1557 sec   (1054 perm/sec)   p_kst 6.548780e-04   p_cons 5.961287e-01   p_joint 2.031707e-03

Joint ci ratio: 6.766860e-02	ci left: 1.961001e-03	ci right 2.098938e-03	k: 3348	n:1650000
Cons ci ratio: 2.511870e-03	ci left: 5.953775e-01	ci right 5.968755e-01	k: 983609	n:1650000
KS ci ratio: 1.191324e-01	ci left: 6.166853e-04	ci right 6.953875e-04	k: 1081	n:1650000
LILRB1   1650000 perm   1573 sec   (1049 perm/sec)   p_kst 6.551515e-04   p_cons 5.961267e-01   p_joint 2.029091e-03

Joint ci ratio: 6.743737e-02	ci left: 1.962810e-03	ci right 2.100383e-03	k: 3371	n:1660000
Cons ci ratio: 2.504381e-03	ci left: 5.953627e-01	ci right 5.968562e-01	k: 989542	n:1660000
KS ci ratio: 1.186944e-01	ci left: 6.176463e-04	ci right 6.961610e-04	k: 1089	n:1660000
LILRB1   1660000 perm   1589 sec   (1044 perm/sec)   p_kst 6.560241e-04   p_cons 5.961096e-01   p_joint 2.030723e-03

Joint ci ratio: 6.720849e-02	ci left: 1.964597e-03	ci right 2.101810e-03	k: 3394	n:1670000
Cons ci ratio: 2.497238e-03	ci left: 5.952942e-01	ci right 5.967833e-01	k: 995385	n:1670000
KS ci ratio: 1.182611e-01	ci left: 6.185963e-04	ci right 6.969246e-04	k: 1097	n:1670000
LILRB1   1670000 perm   1607 sec   (1039 perm/sec)   p_kst 6.568862e-04   p_cons 5.960389e-01   p_joint 2.032335e-03

Joint ci ratio: 6.691331e-02	ci left: 1.970461e-03	ci right 2.107455e-03	k: 3424	n:1680000
Cons ci ratio: 2.489753e-03	ci left: 5.953046e-01	ci right 5.967891e-01	k: 1001359	n:1680000
KS ci ratio: 1.176730e-01	ci left: 6.212686e-04	ci right 6.995169e-04	k: 1108	n:1680000
LILRB1   1680000 perm   1624 sec   (1035 perm/sec)   p_kst 6.595238e-04   p_cons 5.960470e-01   p_joint 2.038095e-03

Joint ci ratio: 6.672851e-02	ci left: 1.969856e-03	ci right 2.106416e-03	k: 3443	n:1690000
Cons ci ratio: 2.482536e-03	ci left: 5.952757e-01	ci right 5.967559e-01	k: 1007267	n:1690000
KS ci ratio: 1.175672e-01	ci left: 6.187411e-04	ci right 6.965961e-04	k: 1110	n:1690000
LILRB1   1690000 perm   1641 sec   (1030 perm/sec)   p_kst 6.568047e-04   p_cons 5.960160e-01   p_joint 2.037278e-03

Joint ci ratio: 6.651636e-02	ci left: 1.970994e-03	ci right 2.107182e-03	k: 3465	n:1700000
Cons ci ratio: 2.475094e-03	ci left: 5.953031e-01	ci right 5.967789e-01	k: 1013270	n:1700000
KS ci ratio: 1.171461e-01	ci left: 6.196692e-04	ci right 6.973424e-04	k: 1118	n:1700000
LILRB1   1700000 perm   1658 sec   (1026 perm/sec)   p_kst 6.576471e-04   p_cons 5.960412e-01   p_joint 2.038235e-03

Joint ci ratio: 6.625866e-02	ci left: 1.974995e-03	ci right 2.110910e-03	k: 3492	n:1710000
Cons ci ratio: 2.468022e-03	ci left: 5.952711e-01	ci right 5.967426e-01	k: 1019172	n:1710000
KS ci ratio: 1.168333e-01	ci left: 6.194515e-04	ci right 6.968758e-04	k: 1124	n:1710000
LILRB1   1710000 perm   1677 sec   (1020 perm/sec)   p_kst 6.573099e-04   p_cons 5.960070e-01   p_joint 2.042105e-03

Joint ci ratio: 6.607921e-02	ci left: 1.974377e-03	ci right 2.109867e-03	k: 3511	n:1720000
Cons ci ratio: 2.460543e-03	ci left: 5.953308e-01	ci right 5.967980e-01	k: 1025231	n:1720000
KS ci ratio: 1.166780e-01	ci left: 6.175432e-04	ci right 6.946193e-04	k: 1127	n:1720000
LILRB1   1720000 perm   1694 sec   (1015 perm/sec)   p_kst 6.552326e-04   p_cons 5.960645e-01   p_joint 2.041279e-03

Joint ci ratio: 6.591057e-02	ci left: 1.973197e-03	ci right 2.108248e-03	k: 3529	n:1730000
Cons ci ratio: 2.453611e-03	ci left: 5.952955e-01	ci right 5.967585e-01	k: 1031127	n:1730000
KS ci ratio: 1.164717e-01	ci left: 6.162183e-04	ci right 6.929837e-04	k: 1131	n:1730000
LILRB1   1730000 perm   1712 sec   (1011 perm/sec)   p_kst 6.537572e-04   p_cons 5.960272e-01   p_joint 2.039884e-03

Joint ci ratio: 6.564133e-02	ci left: 1.978249e-03	ci right 2.113072e-03	k: 3558	n:1740000
Cons ci ratio: 2.446654e-03	ci left: 5.952774e-01	ci right 5.967361e-01	k: 1037052	n:1740000
KS ci ratio: 1.160623e-01	ci left: 6.171408e-04	ci right 6.937324e-04	k: 1139	n:1740000
LILRB1   1740000 perm   1730 sec   (1006 perm/sec)   p_kst 6.545977e-04   p_cons 5.960069e-01   p_joint 2.044828e-03

Joint ci ratio: 6.541190e-02	ci left: 1.980997e-03	ci right 2.115517e-03	k: 3583	n:1750000
Cons ci ratio: 2.439703e-03	ci left: 5.952697e-01	ci right 5.967243e-01	k: 1042995	n:1750000
KS ci ratio: 1.156572e-01	ci left: 6.180533e-04	ci right 6.944720e-04	k: 1147	n:1750000
LILRB1   1750000 perm   1748 sec   (1001 perm/sec)   p_kst 6.554286e-04   p_cons 5.959971e-01   p_joint 2.047429e-03

Joint ci ratio: 6.518487e-02	ci left: 1.983714e-03	ci right 2.117933e-03	k: 3608	n:1760000
Cons ci ratio: 2.432808e-03	ci left: 5.952627e-01	ci right 5.967131e-01	k: 1048939	n:1760000
KS ci ratio: 1.153061e-01	ci left: 6.184040e-04	ci right 6.946183e-04	k: 1154	n:1760000
LILRB1   1760000 perm   1766 sec   (997 perm/sec)   p_kst 6.556818e-04   p_cons 5.959881e-01   p_joint 2.050000e-03

Joint ci ratio: 6.495122e-02	ci left: 1.986957e-03	ci right 2.120895e-03	k: 3634	n:1770000
Cons ci ratio: 2.426022e-03	ci left: 5.952456e-01	ci right 5.966920e-01	k: 1054865	n:1770000
KS ci ratio: 1.148594e-01	ci left: 6.198486e-04	ci right 6.959249e-04	k: 1163	n:1770000
LILRB1   1770000 perm   1783 sec   (992 perm/sec)   p_kst 6.570621e-04   p_cons 5.959689e-01   p_joint 2.053107e-03

Joint ci ratio: 6.474666e-02	ci left: 1.988506e-03	ci right 2.122111e-03	k: 3657	n:1780000
Cons ci ratio: 2.419109e-03	ci left: 5.952652e-01	ci right 5.967075e-01	k: 1060856	n:1780000
KS ci ratio: 1.143691e-01	ci left: 6.218233e-04	ci right 6.977941e-04	k: 1173	n:1780000
LILRB1   1780000 perm   1801 sec   (988 perm/sec)   p_kst 6.589888e-04   p_cons 5.959865e-01   p_joint 2.054494e-03

Joint ci ratio: 6.456160e-02	ci left: 1.988939e-03	ci right 2.122177e-03	k: 3678	n:1790000
Cons ci ratio: 2.412104e-03	ci left: 5.953148e-01	ci right 5.967530e-01	k: 1066901	n:1790000
KS ci ratio: 1.140780e-01	ci left: 6.216056e-04	ci right 6.973435e-04	k: 1179	n:1790000
LILRB1   1790000 perm   1822 sec   (983 perm/sec)   p_kst 6.586592e-04   p_cons 5.960341e-01   p_joint 2.054749e-03

Joint ci ratio: 6.434327e-02	ci left: 1.991555e-03	ci right 2.124500e-03	k: 3703	n:1800000
Cons ci ratio: 2.405232e-03	ci left: 5.953494e-01	ci right 5.967836e-01	k: 1072920	n:1800000
KS ci ratio: 1.135975e-01	ci left: 6.235496e-04	ci right 6.991830e-04	k: 1189	n:1800000
LILRB1   1800000 perm   1840 sec   (978 perm/sec)   p_kst 6.605556e-04   p_cons 5.960667e-01   p_joint 2.057222e-03

Joint ci ratio: 6.421348e-02	ci left: 1.988706e-03	ci right 2.121183e-03	k: 3718	n:1810000
Cons ci ratio: 2.398663e-03	ci left: 5.953344e-01	ci right 5.967647e-01	k: 1078850	n:1810000
KS ci ratio: 1.134072e-01	ci left: 6.222518e-04	ci right 6.975928e-04	k: 1193	n:1810000
LILRB1   1810000 perm   1859 sec   (974 perm/sec)   p_kst 6.591160e-04   p_cons 5.960497e-01   p_joint 2.054144e-03

Joint ci ratio: 6.407588e-02	ci left: 1.986429e-03	ci right 2.118460e-03	k: 3734	n:1820000
Cons ci ratio: 2.392257e-03	ci left: 5.952977e-01	ci right 5.967240e-01	k: 1084740	n:1820000
KS ci ratio: 1.132651e-01	ci left: 6.204344e-04	ci right 6.954550e-04	k: 1196	n:1820000
LILRB1   1820000 perm   1879 sec   (969 perm/sec)   p_kst 6.571429e-04   p_cons 5.960110e-01   p_joint 2.051648e-03

Joint ci ratio: 6.386243e-02	ci left: 1.989017e-03	ci right 2.120764e-03	k: 3759	n:1830000
Cons ci ratio: 2.385641e-03	ci left: 5.953138e-01	ci right 5.967362e-01	k: 1090726	n:1830000
KS ci ratio: 1.130293e-01	ci left: 6.196989e-04	ci right 6.944642e-04	k: 1201	n:1830000
LILRB1   1830000 perm   1899 sec   (963 perm/sec)   p_kst 6.562842e-04   p_cons 5.960251e-01   p_joint 2.054098e-03

Joint ci ratio: 6.370171e-02	ci left: 1.988368e-03	ci right 2.119729e-03	k: 3778	n:1840000
Cons ci ratio: 2.378914e-03	ci left: 5.953634e-01	ci right 5.967819e-01	k: 1096774	n:1840000
KS ci ratio: 1.127016e-01	ci left: 6.200280e-04	ci right 6.946017e-04	k: 1208	n:1840000
LILRB1   1840000 perm   1918 sec   (960 perm/sec)   p_kst 6.565217e-04   p_cons 5.960728e-01   p_joint 2.053261e-03

Joint ci ratio: 6.354220e-02	ci left: 1.987727e-03	ci right 2.118704e-03	k: 3797	n:1850000
Cons ci ratio: 2.372401e-03	ci left: 5.953806e-01	ci right 5.967953e-01	k: 1102763	n:1850000
KS ci ratio: 1.122844e-01	ci left: 6.214045e-04	ci right 6.958487e-04	k: 1217	n:1850000
LILRB1   1850000 perm   1938 sec   (955 perm/sec)   p_kst 6.578378e-04   p_cons 5.960881e-01   p_joint 2.052432e-03

Joint ci ratio: 6.346724e-02	ci left: 1.981802e-03	ci right 2.112229e-03	k: 3806	n:1860000
Cons ci ratio: 2.366012e-03	ci left: 5.953831e-01	ci right 5.967940e-01	k: 1108725	n:1860000
KS ci ratio: 1.121924e-01	ci left: 6.191086e-04	ci right 6.932131e-04	k: 1219	n:1860000
LILRB1   1860000 perm   1957 sec   (950 perm/sec)   p_kst 6.553763e-04   p_cons 5.960887e-01   p_joint 2.046237e-03

Joint ci ratio: 6.322673e-02	ci left: 1.986467e-03	ci right 2.116687e-03	k: 3835	n:1870000
Cons ci ratio: 2.359837e-03	ci left: 5.953524e-01	ci right 5.967596e-01	k: 1114625	n:1870000
KS ci ratio: 1.117353e-01	ci left: 6.209958e-04	ci right 6.950033e-04	k: 1229	n:1870000
LILRB1   1870000 perm   1976 sec   (946 perm/sec)   p_kst 6.572193e-04   p_cons 5.960561e-01   p_joint 2.050802e-03

Joint ci ratio: 6.302163e-02	ci left: 1.988989e-03	ci right 2.118936e-03	k: 3860	n:1880000
Cons ci ratio: 2.353452e-03	ci left: 5.953748e-01	ci right 5.967781e-01	k: 1120624	n:1880000
KS ci ratio: 1.113737e-01	ci left: 6.218292e-04	ci right 6.956805e-04	k: 1237	n:1880000
LILRB1   1880000 perm   1995 sec   (942 perm/sec)   p_kst 6.579787e-04   p_cons 5.960766e-01   p_joint 2.053191e-03

Joint ci ratio: 6.285904e-02	ci left: 1.988880e-03	ci right 2.118473e-03	k: 3880	n:1890000
Cons ci ratio: 2.347243e-03	ci left: 5.953715e-01	ci right 5.967711e-01	k: 1126575	n:1890000
KS ci ratio: 1.112391e-01	ci left: 6.200822e-04	ci right 6.936311e-04	k: 1240	n:1890000
LILRB1   1890000 perm   2013 sec   (939 perm/sec)   p_kst 6.560847e-04   p_cons 5.960714e-01   p_joint 2.052910e-03

Joint ci ratio: 6.265749e-02	ci left: 1.991364e-03	ci right 2.120687e-03	k: 3905	n:1900000
Cons ci ratio: 2.340878e-03	ci left: 5.954103e-01	ci right 5.968062e-01	k: 1132606	n:1900000
KS ci ratio: 1.108822e-01	ci left: 6.209122e-04	ci right 6.943079e-04	k: 1248	n:1900000
LILRB1   1900000 perm   2032 sec   (935 perm/sec)   p_kst 6.568421e-04   p_cons 5.961084e-01   p_joint 2.055263e-03

Joint ci ratio: 6.251365e-02	ci left: 1.990215e-03	ci right 2.119156e-03	k: 3923	n:1910000
Cons ci ratio: 2.334519e-03	ci left: 5.954582e-01	ci right 5.968504e-01	k: 1138655	n:1910000
KS ci ratio: 1.107494e-01	ci left: 6.191884e-04	ci right 6.922870e-04	k: 1251	n:1910000
LILRB1   1910000 perm   2051 sec   (931 perm/sec)   p_kst 6.549738e-04   p_cons 5.961545e-01   p_joint 2.053927e-03

Joint ci ratio: 6.235496e-02	ci left: 1.990103e-03	ci right 2.118698e-03	k: 3943	n:1920000
Cons ci ratio: 2.328418e-03	ci left: 5.954628e-01	ci right 5.968514e-01	k: 1144622	n:1920000
KS ci ratio: 1.104850e-01	ci left: 6.190020e-04	ci right 6.918928e-04	k: 1257	n:1920000
LILRB1   1920000 perm   2070 sec   (927 perm/sec)   p_kst 6.546875e-04   p_cons 5.961573e-01   p_joint 2.053646e-03

Joint ci ratio: 6.222893e-02	ci left: 1.987953e-03	ci right 2.116140e-03	k: 3959	n:1930000
Cons ci ratio: 2.322427e-03	ci left: 5.954545e-01	ci right 5.968395e-01	k: 1150564	n:1930000
KS ci ratio: 1.102661e-01	ci left: 6.183139e-04	ci right 6.909700e-04	k: 1262	n:1930000
LILRB1   1930000 perm   2091 sec   (923 perm/sec)   p_kst 6.538860e-04   p_cons 5.961472e-01   p_joint 2.051295e-03

Joint ci ratio: 6.210367e-02	ci left: 1.985825e-03	ci right 2.113607e-03	k: 3975	n:1940000
Cons ci ratio: 2.316437e-03	ci left: 5.954555e-01	ci right 5.968370e-01	k: 1156524	n:1940000
KS ci ratio: 1.100920e-01	ci left: 6.171317e-04	ci right 6.895270e-04	k: 1266	n:1940000
LILRB1   1940000 perm   2111 sec   (919 perm/sec)   p_kst 6.525773e-04   p_cons 5.961464e-01   p_joint 2.048969e-03

Joint ci ratio: 6.201030e-02	ci left: 1.981699e-03	ci right 2.109018e-03	k: 3987	n:1950000
Cons ci ratio: 2.310626e-03	ci left: 5.954289e-01	ci right 5.968068e-01	k: 1162430	n:1950000
KS ci ratio: 1.100053e-01	ci left: 6.149643e-04	ci right 6.870449e-04	k: 1268	n:1950000
LILRB1   1950000 perm   2130 sec   (915 perm/sec)   p_kst 6.502564e-04   p_cons 5.961179e-01   p_joint 2.044615e-03

Joint ci ratio: 6.186313e-02	ci left: 1.981132e-03	ci right 2.108102e-03	k: 4006	n:1960000
Cons ci ratio: 2.304668e-03	ci left: 5.954423e-01	ci right 5.968166e-01	k: 1168414	n:1960000
KS ci ratio: 1.098325e-01	ci left: 6.138115e-04	ci right 6.856364e-04	k: 1272	n:1960000
LILRB1   1960000 perm   2150 sec   (912 perm/sec)   p_kst 6.489796e-04   p_cons 5.961296e-01   p_joint 2.043878e-03

Joint ci ratio: 6.174006e-02	ci left: 1.979072e-03	ci right 2.105648e-03	k: 4022	n:1970000
Cons ci ratio: 2.298650e-03	ci left: 5.954779e-01	ci right 5.968487e-01	k: 1174442	n:1970000
KS ci ratio: 1.097034e-01	ci left: 6.121767e-04	ci right 6.837207e-04	k: 1275	n:1970000
LILRB1   1970000 perm   2170 sec   (908 perm/sec)   p_kst 6.472081e-04   p_cons 5.961635e-01   p_joint 2.041624e-03

Joint ci ratio: 6.161008e-02	ci left: 1.977530e-03	ci right 2.103732e-03	k: 4039	n:1980000
Cons ci ratio: 2.292811e-03	ci left: 5.954854e-01	ci right 5.968527e-01	k: 1180415	n:1980000
KS ci ratio: 1.096176e-01	ci left: 6.100672e-04	ci right 6.813054e-04	k: 1277	n:1980000
LILRB1   1980000 perm   2189 sec   (904 perm/sec)   p_kst 6.449495e-04   p_cons 5.961692e-01   p_joint 2.039899e-03

Joint ci ratio: 6.147332e-02	ci left: 1.976499e-03	ci right 2.102345e-03	k: 4057	n:1990000
Cons ci ratio: 2.287037e-03	ci left: 5.954882e-01	ci right 5.968522e-01	k: 1186379	n:1990000
KS ci ratio: 1.094038e-01	ci left: 6.094453e-04	ci right 6.804632e-04	k: 1282	n:1990000
LILRB1   1990000 perm   2209 sec   (901 perm/sec)   p_kst 6.442211e-04   p_cons 5.961704e-01   p_joint 2.038693e-03

Joint ci ratio: 6.132993e-02	ci left: 1.975970e-03	ci right 2.101479e-03	k: 4076	n:2000000
Cons ci ratio: 2.281416e-03	ci left: 5.954681e-01	ci right 5.968286e-01	k: 1192297	n:2000000
KS ci ratio: 1.093188e-01	ci left: 6.073707e-04	ci right 6.780882e-04	k: 1284	n:2000000
LILRB1   2000000 perm   2228 sec   (898 perm/sec)   p_kst 6.420000e-04   p_cons 5.961485e-01   p_joint 2.038000e-03

Joint ci ratio: 6.116510e-02	ci left: 1.976917e-03	ci right 2.102136e-03	k: 4098	n:2010000
Cons ci ratio: 2.275770e-03	ci left: 5.954621e-01	ci right 5.968192e-01	k: 1198243	n:2010000
KS ci ratio: 1.091068e-01	ci left: 6.067685e-04	ci right 6.772701e-04	k: 1289	n:2010000
LILRB1   2010000 perm   2247 sec   (894 perm/sec)   p_kst 6.412935e-04   p_cons 5.961408e-01   p_joint 2.038806e-03

Joint ci ratio: 6.100901e-02	ci left: 1.977368e-03	ci right 2.102285e-03	k: 4119	n:2020000
Cons ci ratio: 2.270257e-03	ci left: 5.954368e-01	ci right 5.967906e-01	k: 1204150	n:2020000
KS ci ratio: 1.087281e-01	ci left: 6.080988e-04	ci right 6.784941e-04	k: 1298	n:2020000
LILRB1   2020000 perm   2267 sec   (891 perm/sec)   p_kst 6.425743e-04   p_cons 5.961139e-01   p_joint 2.039109e-03

Joint ci ratio: 6.080998e-02	ci left: 1.980725e-03	ci right 2.105431e-03	k: 4146	n:2030000
Cons ci ratio: 2.264784e-03	ci left: 5.954118e-01	ci right 5.967623e-01	k: 1210057	n:2030000
KS ci ratio: 1.084363e-01	ci left: 6.084579e-04	ci right 6.786936e-04	k: 1305	n:2030000
LILRB1   2030000 perm   2287 sec   (888 perm/sec)   p_kst 6.428571e-04   p_cons 5.960872e-01   p_joint 2.042365e-03

Joint ci ratio: 6.057654e-02	ci left: 1.986464e-03	ci right 2.111035e-03	k: 4178	n:2040000
Cons ci ratio: 2.259028e-03	ci left: 5.954557e-01	ci right 5.968028e-01	k: 1216104	n:2040000
KS ci ratio: 1.079414e-01	ci left: 6.111985e-04	ci right 6.814081e-04	k: 1317	n:2040000
LILRB1   2040000 perm   2307 sec   (884 perm/sec)   p_kst 6.455882e-04   p_cons 5.961294e-01   p_joint 2.048039e-03

Joint ci ratio: 6.036732e-02	ci left: 1.990707e-03	ci right 2.115097e-03	k: 4207	n:2050000
Cons ci ratio: 2.253542e-03	ci left: 5.954509e-01	ci right 5.967947e-01	k: 1222052	n:2050000
KS ci ratio: 1.072516e-01	ci left: 6.162866e-04	ci right 6.865998e-04	k: 1334	n:2050000
LILRB1   2050000 perm   2328 sec   (881 perm/sec)   p_kst 6.507317e-04   p_cons 5.961229e-01   p_joint 2.052195e-03

Joint ci ratio: 6.019585e-02	ci left: 1.992518e-03	ci right 2.116656e-03	k: 4231	n:2060000
Cons ci ratio: 2.248116e-03	ci left: 5.954417e-01	ci right 5.967823e-01	k: 1227991	n:2060000
KS ci ratio: 1.068521e-01	ci left: 6.180194e-04	ci right 6.882511e-04	k: 1344	n:2060000
LILRB1   2060000 perm   2351 sec   (876 perm/sec)   p_kst 6.524272e-04   p_cons 5.961121e-01   p_joint 2.053883e-03

Joint ci ratio: 6.006828e-02	ci left: 1.991457e-03	ci right 2.115257e-03	k: 4249	n:2070000
Cons ci ratio: 2.242643e-03	ci left: 5.954510e-01	ci right 5.967883e-01	k: 1233968	n:2070000
KS ci ratio: 1.066146e-01	ci left: 6.178550e-04	ci right 6.879021e-04	k: 1350	n:2070000
LILRB1   2070000 perm   2372 sec   (873 perm/sec)   p_kst 6.521739e-04   p_cons 5.961198e-01   p_joint 2.052657e-03

Joint ci ratio: 5.998378e-02	ci left: 1.987565e-03	ci right 2.110943e-03	k: 4261	n:2080000
Cons ci ratio: 2.237063e-03	ci left: 5.954919e-01	ci right 5.968261e-01	k: 1240011	n:2080000
KS ci ratio: 1.064965e-01	ci left: 6.162883e-04	ci right 6.860756e-04	k: 1353	n:2080000
LILRB1   2080000 perm   2393 sec   (869 perm/sec)   p_kst 6.504808e-04   p_cons 5.961591e-01   p_joint 2.048558e-03

Joint ci ratio: 5.990666e-02	ci left: 1.983240e-03	ci right 2.106185e-03	k: 4272	n:2090000
Cons ci ratio: 2.231613e-03	ci left: 5.955134e-01	ci right 5.968443e-01	k: 1246014	n:2090000
KS ci ratio: 1.063396e-01	ci left: 6.152025e-04	ci right 6.847578e-04	k: 1357	n:2090000
LILRB1   2090000 perm   2414 sec   (866 perm/sec)   p_kst 6.492823e-04   p_cons 5.961789e-01   p_joint 2.044019e-03

Joint ci ratio: 5.977393e-02	ci left: 1.982708e-03	ci right 2.105339e-03	k: 4291	n:2100000
Cons ci ratio: 2.226284e-03	ci left: 5.955170e-01	ci right 5.968447e-01	k: 1251980	n:2100000
KS ci ratio: 1.062224e-01	ci left: 6.136635e-04	ci right 6.829636e-04	k: 1360	n:2100000
LILRB1   2100000 perm   2435 sec   (862 perm/sec)   p_kst 6.476190e-04   p_cons 5.961810e-01   p_joint 2.043333e-03

Joint ci ratio: 5.955908e-02	ci left: 1.987784e-03	ci right 2.110272e-03	k: 4322	n:2110000
Cons ci ratio: 2.220964e-03	ci left: 5.955267e-01	ci right 5.968512e-01	k: 1257959	n:2110000
KS ci ratio: 1.056416e-01	ci left: 6.176759e-04	ci right 6.870240e-04	k: 1375	n:2110000
LILRB1   2110000 perm   2456 sec   (859 perm/sec)   p_kst 6.516588e-04   p_cons 5.961891e-01   p_joint 2.048341e-03

Joint ci ratio: 5.934653e-02	ci left: 1.992813e-03	ci right 2.115157e-03	k: 4353	n:2120000
Cons ci ratio: 2.215670e-03	ci left: 5.955392e-01	ci right 5.968606e-01	k: 1263944	n:2120000
KS ci ratio: 1.052978e-01	ci left: 6.188957e-04	ci right 6.881405e-04	k: 1384	n:2120000
LILRB1   2120000 perm   2478 sec   (855 perm/sec)   p_kst 6.528302e-04   p_cons 5.962000e-01   p_joint 2.053302e-03

Joint ci ratio: 5.921070e-02	ci left: 1.992708e-03	ci right 2.114756e-03	k: 4373	n:2130000
Cons ci ratio: 2.210504e-03	ci left: 5.955318e-01	ci right 5.968501e-01	k: 1269887	n:2130000
KS ci ratio: 1.050327e-01	ci left: 6.191900e-04	ci right 6.882826e-04	k: 1391	n:2130000
LILRB1   2130000 perm   2502 sec   (851 perm/sec)   p_kst 6.530516e-04   p_cons 5.961911e-01   p_joint 2.053052e-03

Joint ci ratio: 5.904215e-02	ci left: 1.994905e-03	ci right 2.116729e-03	k: 4398	n:2140000
Cons ci ratio: 2.205491e-03	ci left: 5.954988e-01	ci right 5.968140e-01	k: 1275775	n:2140000
KS ci ratio: 1.047321e-01	ci left: 6.199369e-04	ci right 6.889027e-04	k: 1399	n:2140000
LILRB1   2140000 perm   2524 sec   (848 perm/sec)   p_kst 6.537383e-04   p_cons 5.961565e-01   p_joint 2.055140e-03

Joint ci ratio: 5.893513e-02	ci left: 1.992959e-03	ci right 2.114435e-03	k: 4414	n:2150000
Cons ci ratio: 2.200124e-03	ci left: 5.955512e-01	ci right 5.968634e-01	k: 1281846	n:2150000
KS ci ratio: 1.045084e-01	ci left: 6.197711e-04	ci right 6.885622e-04	k: 1405	n:2150000
LILRB1   2150000 perm   2546 sec   (845 perm/sec)   p_kst 6.534884e-04   p_cons 5.962074e-01   p_joint 2.053023e-03

Joint ci ratio: 5.876891e-02	ci left: 1.995136e-03	ci right 2.116390e-03	k: 4439	n:2160000
Cons ci ratio: 2.194860e-03	ci left: 5.955888e-01	ci right 5.968979e-01	k: 1287886	n:2160000
KS ci ratio: 1.041755e-01	ci left: 6.209597e-04	ci right 6.896497e-04	k: 1414	n:2160000
LILRB1   2160000 perm   2567 sec   (841 perm/sec)   p_kst 6.546296e-04   p_cons 5.962435e-01   p_joint 2.055093e-03

Joint ci ratio: 5.865018e-02	ci left: 1.994115e-03	ci right 2.115054e-03	k: 4457	n:2170000
Cons ci ratio: 2.189735e-03	ci left: 5.956040e-01	ci right 5.969101e-01	k: 1293878	n:2170000
KS ci ratio: 1.040286e-01	ci left: 6.198935e-04	ci right 6.883629e-04	k: 1418	n:2170000
LILRB1   2170000 perm   2589 sec   (838 perm/sec)   p_kst 6.534562e-04   p_cons 5.962571e-01   p_joint 2.053917e-03

Joint ci ratio: 5.844718e-02	ci left: 1.998980e-03	ci right 2.119780e-03	k: 4488	n:2180000
Cons ci ratio: 2.184635e-03	ci left: 5.956213e-01	ci right 5.969243e-01	k: 1299875	n:2180000
KS ci ratio: 1.037002e-01	ci left: 6.210712e-04	ci right 6.894409e-04	k: 1427	n:2180000
LILRB1   2180000 perm   2612 sec   (835 perm/sec)   p_kst 6.545872e-04   p_cons 5.962729e-01   p_joint 2.058716e-03

Joint ci ratio: 5.833038e-02	ci left: 1.997951e-03	ci right 2.118440e-03	k: 4506	n:2190000
Cons ci ratio: 2.179582e-03	ci left: 5.956361e-01	ci right 5.969362e-01	k: 1305867	n:2190000
KS ci ratio: 1.035553e-01	ci left: 6.200143e-04	ci right 6.881666e-04	k: 1431	n:2190000
LILRB1   2190000 perm   2634 sec   (831 perm/sec)   p_kst 6.534247e-04   p_cons 5.962863e-01   p_joint 2.057534e-03

Joint ci ratio: 5.818852e-02	ci left: 1.998724e-03	ci right 2.118956e-03	k: 4528	n:2200000
Cons ci ratio: 2.174429e-03	ci left: 5.956804e-01	ci right 5.969775e-01	k: 1311924	n:2200000
KS ci ratio: 1.033750e-01	ci left: 6.194100e-04	ci right 6.873701e-04	k: 1436	n:2200000
LILRB1   2200000 perm   2661 sec   (827 perm/sec)   p_kst 6.527273e-04   p_cons 5.963291e-01   p_joint 2.058182e-03

Joint ci ratio: 5.806687e-02	ci left: 1.998152e-03	ci right 2.118091e-03	k: 4547	n:2210000
Cons ci ratio: 2.169619e-03	ci left: 5.956564e-01	ci right 5.969506e-01	k: 1317831	n:2210000
KS ci ratio: 1.031957e-01	ci left: 6.188112e-04	ci right 6.865807e-04	k: 1441	n:2210000
LILRB1   2210000 perm   2683 sec   (824 perm/sec)   p_kst 6.520362e-04   p_cons 5.963036e-01   p_joint 2.057466e-03

Joint ci ratio: 5.793327e-02	ci left: 1.998474e-03	ci right 2.118146e-03	k: 4568	n:2220000
Cons ci ratio: 2.164777e-03	ci left: 5.956466e-01	ci right 5.969379e-01	k: 1323769	n:2220000
KS ci ratio: 1.029461e-01	ci left: 6.190957e-04	ci right 6.867224e-04	k: 1448	n:2220000
LILRB1   2220000 perm   2707 sec   (820 perm/sec)   p_kst 6.522523e-04   p_cons 5.962923e-01   p_joint 2.057658e-03

Joint ci ratio: 5.783848e-02	ci left: 1.996141e-03	ci right 2.115472e-03	k: 4583	n:2230000
Cons ci ratio: 2.159848e-03	ci left: 5.956638e-01	ci right 5.969521e-01	k: 1329767	n:2230000
KS ci ratio: 1.028044e-01	ci left: 6.180670e-04	ci right 6.854828e-04	k: 1452	n:2230000
LILRB1   2230000 perm   2730 sec   (817 perm/sec)   p_kst 6.511211e-04   p_cons 5.963081e-01   p_joint 2.055157e-03

Joint ci ratio: 5.770644e-02	ci left: 1.996469e-03	ci right 2.115538e-03	k: 4604	n:2240000
Cons ci ratio: 2.154979e-03	ci left: 5.956745e-01	ci right 5.969600e-01	k: 1335751	n:2240000
KS ci ratio: 1.025928e-01	ci left: 6.179176e-04	ci right 6.851700e-04	k: 1458	n:2240000
LILRB1   2240000 perm   2752 sec   (814 perm/sec)   p_kst 6.508929e-04   p_cons 5.963174e-01   p_joint 2.055357e-03

Joint ci ratio: 5.757530e-02	ci left: 1.996795e-03	ci right 2.115603e-03	k: 4625	n:2250000
Cons ci ratio: 2.150285e-03	ci left: 5.956537e-01	ci right 5.969363e-01	k: 1341664	n:2250000
KS ci ratio: 1.022778e-01	ci left: 6.190688e-04	ci right 6.862272e-04	k: 1467	n:2250000
LILRB1   2250000 perm   2775 sec   (811 perm/sec)   p_kst 6.520000e-04   p_cons 5.962951e-01   p_joint 2.055556e-03

Joint ci ratio: 5.740793e-02	ci left: 1.999735e-03	ci right 2.118361e-03	k: 4652	n:2260000
Cons ci ratio: 2.145591e-03	ci left: 5.956396e-01	ci right 5.969194e-01	k: 1347592	n:2260000
KS ci ratio: 1.021388e-01	ci left: 6.180542e-04	ci right 6.850060e-04	k: 1471	n:2260000
LILRB1   2260000 perm   2799 sec   (807 perm/sec)   p_kst 6.508850e-04   p_cons 5.962796e-01   p_joint 2.058407e-03

Joint ci ratio: 5.721752e-02	ci left: 2.004386e-03	ci right 2.122881e-03	k: 4683	n:2270000
Cons ci ratio: 2.140891e-03	ci left: 5.956341e-01	ci right 5.969111e-01	k: 1353539	n:2270000
KS ci ratio: 1.018968e-01	ci left: 6.183365e-04	ci right 6.851507e-04	k: 1478	n:2270000
LILRB1   2270000 perm   2823 sec   (804 perm/sec)   p_kst 6.511013e-04   p_cons 5.962727e-01   p_joint 2.062996e-03

Joint ci ratio: 5.707752e-02	ci left: 2.005539e-03	ci right 2.123802e-03	k: 4706	n:2280000
Cons ci ratio: 2.136079e-03	ci left: 5.956606e-01	ci right 5.969348e-01	k: 1359559	n:2280000
KS ci ratio: 1.017936e-01	ci left: 6.169068e-04	ci right 6.834949e-04	k: 1481	n:2280000
LILRB1   2280000 perm   2845 sec   (801 perm/sec)   p_kst 6.495614e-04   p_cons 5.962978e-01   p_joint 2.064035e-03

Joint ci ratio: 5.696269e-02	ci left: 2.004960e-03	ci right 2.122943e-03	k: 4725	n:2290000
Cons ci ratio: 2.131534e-03	ci left: 5.956341e-01	ci right 5.969054e-01	k: 1365458	n:2290000
KS ci ratio: 1.014179e-01	ci left: 6.188943e-04	ci right 6.854357e-04	k: 1492	n:2290000
LILRB1   2290000 perm   2868 sec   (799 perm/sec)   p_kst 6.515284e-04   p_cons 5.962699e-01   p_joint 2.063319e-03

Joint ci ratio: 5.683655e-02	ci left: 2.005243e-03	ci right 2.122973e-03	k: 4746	n:2300000
Cons ci ratio: 2.126973e-03	ci left: 5.956177e-01	ci right 5.968864e-01	k: 1371380	n:2300000
KS ci ratio: 1.012485e-01	ci left: 6.183223e-04	ci right 6.846846e-04	k: 1497	n:2300000
LILRB1   2300000 perm   2890 sec   (796 perm/sec)   p_kst 6.508696e-04   p_cons 5.962522e-01   p_joint 2.063478e-03

Joint ci ratio: 5.672317e-02	ci left: 2.004671e-03	ci right 2.122124e-03	k: 4765	n:2310000
Cons ci ratio: 2.122398e-03	ci left: 5.956115e-01	ci right 5.968774e-01	k: 1377325	n:2310000
KS ci ratio: 1.009792e-01	ci left: 6.190212e-04	ci right 6.852713e-04	k: 1505	n:2310000
LILRB1   2310000 perm   2913 sec   (793 perm/sec)   p_kst 6.515152e-04   p_cons 5.962446e-01   p_joint 2.062771e-03

Joint ci ratio: 5.656901e-02	ci left: 2.007078e-03	ci right 2.124343e-03	k: 4791	n:2320000
Cons ci ratio: 2.117797e-03	ci left: 5.956179e-01	ci right 5.968810e-01	k: 1383299	n:2320000
KS ci ratio: 1.007120e-01	ci left: 6.197143e-04	ci right 6.858527e-04	k: 1513	n:2320000
LILRB1   2320000 perm   2936 sec   (790 perm/sec)   p_kst 6.521552e-04   p_cons 5.962496e-01   p_joint 2.065086e-03

Joint ci ratio: 5.644546e-02	ci left: 2.007349e-03	ci right 2.124366e-03	k: 4812	n:2330000
Cons ci ratio: 2.113250e-03	ci left: 5.956186e-01	ci right 5.968790e-01	k: 1389260	n:2330000
KS ci ratio: 1.006457e-01	ci left: 6.178913e-04	ci right 6.837892e-04	k: 1515	n:2330000
LILRB1   2330000 perm   2959 sec   (787 perm/sec)   p_kst 6.502146e-04   p_cons 5.962489e-01   p_joint 2.065236e-03

Joint ci ratio: 5.634608e-02	ci left: 2.005934e-03	ci right 2.122655e-03	k: 4829	n:2340000
Cons ci ratio: 2.108677e-03	ci left: 5.956321e-01	ci right 5.968899e-01	k: 1395251	n:2340000
KS ci ratio: 1.004801e-01	ci left: 6.173338e-04	ci right 6.830575e-04	k: 1520	n:2340000
LILRB1   2340000 perm   2982 sec   (785 perm/sec)   p_kst 6.495726e-04   p_cons 5.962611e-01   p_joint 2.063675e-03

Joint ci ratio: 5.624141e-02	ci left: 2.004949e-03	ci right 2.121390e-03	k: 4847	n:2350000
Cons ci ratio: 2.104194e-03	ci left: 5.956315e-01	ci right 5.968866e-01	k: 1401209	n:2350000
KS ci ratio: 1.003813e-01	ci left: 6.159513e-04	ci right 6.814595e-04	k: 1523	n:2350000
LILRB1   2350000 perm   3005 sec   (782 perm/sec)   p_kst 6.480851e-04   p_cons 5.962591e-01   p_joint 2.062553e-03

Joint ci ratio: 5.613155e-02	ci left: 2.004392e-03	ci right 2.120565e-03	k: 4866	n:2360000
Cons ci ratio: 2.099749e-03	ci left: 5.956288e-01	ci right 5.968812e-01	k: 1407162	n:2360000
KS ci ratio: 1.001842e-01	ci left: 6.158200e-04	ci right 6.811781e-04	k: 1529	n:2360000
LILRB1   2360000 perm   3029 sec   (779 perm/sec)   p_kst 6.478814e-04   p_cons 5.962551e-01   p_joint 2.061864e-03

Joint ci ratio: 5.603957e-02	ci left: 2.002591e-03	ci right 2.118463e-03	k: 4882	n:2370000
Cons ci ratio: 2.095391e-03	ci left: 5.956126e-01	ci right 5.968623e-01	k: 1413083	n:2370000
KS ci ratio: 9.992332e-02	ci left: 6.165127e-04	ci right 6.817639e-04	k: 1537	n:2370000
LILRB1   2370000 perm   3053 sec   (776 perm/sec)   p_kst 6.485232e-04   p_cons 5.962376e-01   p_joint 2.059916e-03

Outputting figure to mutsig2_images.part000000000097/LILRB1.2_2015_2370000_0.00064852_0.59624_0.0020599.png
                gene_name: LILRB1
               theta_stop: 0.100 
                    nperm: 2370000 
                     p_ks: 0.00065 
        ci_ks_bounds_left: 0.00062 
       ci_ks_bounds_right: 0.00068 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.0021 
     ci_joint_bounds_left: 0.0020 
    ci_joint_bounds_right: 0.0021 

Current progress: 67 percent done.
LIMCH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.548872e-02	ci left: 8.581460e-01	ci right 8.716407e-01	k: 8650	n:10000
KS ci ratio: 1.043788e-01	ci left: 1.171118e-01	ci right 1.301083e-01	k: 1235	n:10000
LIMCH1   10000 perm   2 sec   (5284 perm/sec)   p_kst 1.235000e-01   p_cons 8.650000e-01   p_joint 1

Joint ci ratio: 1.034074e-02	ci left: 8.732317e-01	ci right 8.823581e-01	k: 17557	n:20000
Cons ci ratio: 1.094894e-02	ci left: 8.602367e-01	ci right 8.697569e-01	k: 17301	n:20000
KS ci ratio: 7.420271e-02	ci left: 1.178879e-01	ci right 1.270222e-01	k: 2448	n:20000
LIMCH1   20000 perm   4 sec   (4661 perm/sec)   p_kst 1.224000e-01   p_cons 8.650500e-01   p_joint 8.778500e-01

Outputting figure to mutsig2_images.part000000000097/LIMCH1.2_3388_20000_0.1224_0.86505_0.87785.png
                gene_name: LIMCH1
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 83 percent done.
LINGO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.434968e-02	ci left: 5.558170e-01	ci right 5.753448e-01	k: 5656	n:10000
Cons ci ratio: 5.637744e-02	ci left: 3.166160e-01	ci right 3.350856e-01	k: 3258	n:10000
KS ci ratio: 4.361100e-02	ci left: 4.370225e-01	ci right 4.566085e-01	k: 4468	n:10000
LINGO2   10000 perm   2 sec   (4989 perm/sec)   p_kst 4.468000e-01   p_cons 3.258000e-01   p_joint 5.656000e-01

Outputting figure to mutsig2_images.part000000000097/LINGO2.2_1825_10000_0.4468_0.3258_0.5656.png
                gene_name: LINGO2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000097
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 97 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1537>
Subject: Job 9877498: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1537>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000098> was used as the working directory.
Started at Fri Oct  5 22:45:38 2012
Results reported at Fri Oct  5 22:49:09 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000098.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000098.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 98  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000098.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    240.30 sec.
    Max Memory :      2166 MB
    Max Swap   :      4700 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
98
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 98
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 98: processing genes 8796 - 8886
Calculating significance of each gene.
Using projection method.
8796	LOC401052	1
8797	LOC402644	1
8798	LOC440563	1
8799	LOC55908	1
8800	LOC642587	1
8801	LOC645961	1
8802	LOC646498	1
8803	LOC649330	1
8804	LOC653486	1
8805	LOC728819	1
8806	LOC729020	1
8807	LOC729991-MEF2B	1
8808	LOC81691	1
8809	LOH12CR1	1
8810	LONP1	1
8811	LONP2	1
8812	LONRF1	1
8813	LONRF2	1
8814	LONRF3	1
8815	LOX	1.010228e-01
8816	LOXL1	1
8817	LOXL2	1.181900e-01
8818	LOXL3	9.632861e-02
8819	LOXL4	8.200952e-02
8820	LPA	1
8821	LPAR1	5.182794e-02
8822	LPAR2	1
8823	LPAR3	1
8824	LPAR4	1
8825	LPAR5	1
8826	LPAR6	1
8827	LPCAT1	1
8828	LPCAT2	1
8829	LPCAT3	1
8830	LPCAT4	1
8831	LPGAT1	1
8832	LPHN1	1
8833	LPHN2	2.185562e-01
8834	LPHN3	4.306738e-04
8835	LPIN1	1.573504e-01
8836	LPIN2	1
8837	LPIN3	1
8838	LPL	1
8839	LPO	1
8840	LPP	1
8841	LPPR1	1
8842	LPPR2	1
8843	LPPR3	1
8844	LPPR4	1
8845	LPPR5	2.102735e-02
8846	LPXN	1
8847	LRAT	1
8848	LRBA	5.217182e-01
8849	LRCH1	4.536629e-02
8850	LRCH2	1
8851	LRCH3	1
8852	LRCH4	5.724019e-02
8853	LRDD	1
8854	LRFN1	1
8855	LRFN2	1
8856	LRFN3	1
8857	LRFN4	1.341188e-01
8858	LRFN5	1
8859	LRG1	1
8860	LRGUK	7.291746e-02
8861	LRIG1	2.014231e-01
8862	LRIG2	1.629991e-02
8863	LRIG3	2.269197e-02
8864	LRIT1	1
8865	LRIT2	1.491340e-05
8866	LRIT3	9.497631e-02
8867	LRMP	1
8868	LRP1	3.011516e-01
8869	LRP10	1
8870	LRP11	1
8871	LRP12	2.032567e-01
In gene LRP1B the following bins exceed PROBCAP:
    PRAD-EJ-5496	categ 6	N = 14164   n = 1	mu =   1.66e-07
8872	LRP1B	1.491446e-02
8873	LRP2	1
8874	LRP2BP	1
8875	LRP3	1
8876	LRP4	1
8877	LRP5	1
8878	LRP5L	1
8879	LRP6	2.580225e-01
8880	LRP8	1
8881	LRPAP1	1
8882	LRPPRC	1
8883	LRRC1	1
8884	LRRC10	1
8885	LRRC14	1.868362e-01
8886	LRRC14B	1
Done

Running MutSig 2:
Scatter job 98: processing genes 8796 - 8886
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
LRP1B
Processing conservation and coverage...
70% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.025482e-01	ci left: 3.243447e-02	ci right 3.983893e-02	k: 360	n:10000
Cons ci ratio: 2.803301e-02	ci left: 6.522301e-01	ci right 6.708757e-01	k: 6616	n:10000
KS ci ratio: 3.103695e-01	ci left: 1.326304e-02	ci right 1.822489e-02	k: 156	n:10000
LRP1B   10000 perm   4 sec   (2256 perm/sec)   p_kst 1.560000e-02   p_cons 6.616000e-01   p_joint 3.600000e-02

Joint ci ratio: 1.433295e-01	ci left: 3.346084e-02	ci right 3.867516e-02	k: 720	n:20000
Cons ci ratio: 1.982974e-02	ci left: 6.548436e-01	ci right 6.680095e-01	k: 13229	n:20000
KS ci ratio: 2.146584e-01	ci left: 1.463801e-02	ci right 1.820458e-02	k: 327	n:20000
LRP1B   20000 perm   12 sec   (1631 perm/sec)   p_kst 1.635000e-02   p_cons 6.614500e-01   p_joint 3.600000e-02

Joint ci ratio: 1.141841e-01	ci left: 3.563770e-02	ci right 3.998573e-02	k: 1133	n:30000
Cons ci ratio: 1.607019e-02	ci left: 6.594258e-01	ci right 6.701423e-01	k: 19944	n:30000
KS ci ratio: 1.774827e-01	ci left: 1.457862e-02	ci right 1.744955e-02	k: 479	n:30000
LRP1B   30000 perm   17 sec   (1761 perm/sec)   p_kst 1.596667e-02   p_cons 6.648000e-01   p_joint 3.776667e-02

Joint ci ratio: 9.716320e-02	ci left: 3.719708e-02	ci right 4.102020e-02	k: 1563	n:40000
Cons ci ratio: 1.391962e-02	ci left: 6.600743e-01	ci right 6.693518e-01	k: 26589	n:40000
KS ci ratio: 1.528578e-01	ci left: 1.493743e-02	ci right 1.743352e-02	k: 646	n:40000
LRP1B   40000 perm   22 sec   (1830 perm/sec)   p_kst 1.615000e-02   p_cons 6.647250e-01   p_joint 3.907500e-02

Joint ci ratio: 8.720780e-02	ci left: 3.714368e-02	ci right 4.055013e-02	k: 1941	n:50000
Cons ci ratio: 1.250898e-02	ci left: 6.584563e-01	ci right 6.667648e-01	k: 33131	n:50000
KS ci ratio: 1.372172e-01	ci left: 1.495700e-02	ci right 1.717970e-02	k: 802	n:50000
LRP1B   50000 perm   27 sec   (1848 perm/sec)   p_kst 1.604000e-02   p_cons 6.626200e-01   p_joint 3.882000e-02

Joint ci ratio: 8.297173e-02	ci left: 3.437654e-02	ci right 3.736857e-02	k: 2151	n:60000
Cons ci ratio: 1.140090e-02	ci left: 6.595359e-01	ci right 6.671150e-01	k: 39800	n:60000
KS ci ratio: 1.261697e-01	ci left: 1.483349e-02	ci right 1.684707e-02	k: 949	n:60000
LRP1B   60000 perm   32 sec   (1874 perm/sec)   p_kst 1.581667e-02   p_cons 6.633333e-01   p_joint 3.585000e-02

Joint ci ratio: 7.624658e-02	ci left: 3.499667e-02	ci right 3.778479e-02	k: 2546	n:70000
Cons ci ratio: 1.054147e-02	ci left: 6.604011e-01	ci right 6.674139e-01	k: 46474	n:70000
KS ci ratio: 1.158757e-01	ci left: 1.515283e-02	ci right 1.703045e-02	k: 1125	n:70000
LRP1B   70000 perm   37 sec   (1889 perm/sec)   p_kst 1.607143e-02   p_cons 6.639143e-01   p_joint 3.637143e-02

Joint ci ratio: 7.285358e-02	ci left: 3.365117e-02	ci right 3.620770e-02	k: 2793	n:80000
Cons ci ratio: 9.865118e-03	ci left: 6.604266e-01	ci right 6.669865e-01	k: 53097	n:80000
KS ci ratio: 1.092518e-01	ci left: 1.497155e-02	ci right 1.671382e-02	k: 1266	n:80000
LRP1B   80000 perm   42 sec   (1896 perm/sec)   p_kst 1.582500e-02   p_cons 6.637125e-01   p_joint 3.491250e-02

Joint ci ratio: 7.540093e-02	ci left: 2.805512e-02	ci right 3.026425e-02	k: 2623	n:90000
Cons ci ratio: 9.306981e-03	ci left: 6.603242e-01	ci right 6.665097e-01	k: 59708	n:90000
KS ci ratio: 1.031278e-01	ci left: 1.498455e-02	ci right 1.662465e-02	k: 1421	n:90000
LRP1B   90000 perm   47 sec   (1899 perm/sec)   p_kst 1.578889e-02   p_cons 6.634222e-01   p_joint 2.914444e-02

Joint ci ratio: 7.016221e-02	ci left: 2.920692e-02	ci right 3.134044e-02	k: 3026	n:100000
Cons ci ratio: 8.634034e-03	ci left: 6.704232e-01	ci right 6.762467e-01	k: 67334	n:100000
KS ci ratio: 9.771005e-02	ci left: 1.506545e-02	ci right 1.662281e-02	k: 1583	n:100000
LRP1B   100000 perm   53 sec   (1896 perm/sec)   p_kst 1.583000e-02   p_cons 6.733400e-01   p_joint 3.026000e-02

Outputting figure to mutsig2_images.part000000000098/LRP1B.5_14164_100000_0.01583_0.67334_0.03026.png
                gene_name: LRP1B
               theta_stop: 0.098 
                    nperm: 100000 
                     p_ks: 0.016 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.017 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.031 

Current progress: 17 percent done.
LPHN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.476226e-02	ci left: 3.294222e-01	ci right 3.480718e-01	k: 3387	n:10000
Cons ci ratio: 3.914713e-02	ci left: 4.907512e-01	ci right 5.104484e-01	k: 5006	n:10000
KS ci ratio: 9.863257e-02	ci left: 1.296319e-01	ci right 1.431807e-01	k: 1363	n:10000
LPHN3   10000 perm   2 sec   (4104 perm/sec)   p_kst 1.363000e-01   p_cons 5.006000e-01   p_joint 3.387000e-01

Outputting figure to mutsig2_images.part000000000098/LPHN3.4_4502_10000_0.1363_0.5006_0.3387.png
                gene_name: LPHN3
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 33 percent done.
LRIT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.100063e-02	ci left: 7.687114e-01	ci right 7.851269e-01	k: 7770	n:10000
Cons ci ratio: 1.227189e-02	ci left: 9.050431e-01	ci right 9.163163e-01	k: 9108	n:10000
KS ci ratio: 5.788665e-02	ci left: 3.052063e-01	ci right 3.235020e-01	k: 3143	n:10000
LRIT2   10000 perm   2 sec   (5401 perm/sec)   p_kst 3.143000e-01   p_cons 9.108000e-01   p_joint 7.770000e-01

Outputting figure to mutsig2_images.part000000000098/LRIT2.4_1665_10000_0.3143_0.9108_0.777.png
                gene_name: LRIT2
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 50 percent done.
LRP1
Processing conservation and coverage...
71% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.953258e-02	ci left: 4.858530e-01	ci right 5.055495e-01	k: 4957	n:10000
Cons ci ratio: 1.977813e-02	ci left: 7.890818e-01	ci right 8.049448e-01	k: 7971	n:10000
KS ci ratio: 6.802223e-02	ci left: 2.407462e-01	ci right 2.578001e-01	k: 2492	n:10000
LRP1   10000 perm   4 sec   (2294 perm/sec)   p_kst 2.492000e-01   p_cons 7.971000e-01   p_joint 4.957000e-01

Outputting figure to mutsig2_images.part000000000098/LRP1.3_13991_10000_0.2492_0.7971_0.4957.png
                gene_name: LRP1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 67 percent done.
LRIG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.808098e-02	ci left: 1.933804e-01	ci right 2.091940e-01	k: 2012	n:10000
KS ci ratio: 2.630407e-02	ci left: 6.803271e-01	ci right 6.985625e-01	k: 6895	n:10000
LRIG2   10000 perm   2 sec   (5287 perm/sec)   p_kst 6.895000e-01   p_cons 2.012000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000098/LRIG2.2_3270_10000_0.6895_0.2012_1.png
                gene_name: LRIG2
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
LRIG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.308502e-02	ci left: 8.937479e-01	ci right 9.056181e-01	k: 8998	n:10000
KS ci ratio: 1.631413e-02	ci left: 8.452954e-01	ci right 8.592987e-01	k: 8524	n:10000
LRIG3   10000 perm   2 sec   (5227 perm/sec)   p_kst 8.524000e-01   p_cons 8.998000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000098/LRIG3.2_3496_10000_0.8524_0.8998_1.png
                gene_name: LRIG3
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000098
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 98 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1644>
Subject: Job 9877507: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1644>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000099> was used as the working directory.
Started at Fri Oct  5 22:45:38 2012
Results reported at Sat Oct  6 00:51:07 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000099.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000099.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 99  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000099.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   7610.79 sec.
    Max Memory :      2151 MB
    Max Swap   :      4740 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
99
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 99
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 99: processing genes 8887 - 8976
Calculating significance of each gene.
Using projection method.
8887	LRRC15	1.637774e-01
8888	LRRC16A	1.247051e-01
8889	LRRC16B	2.533177e-01
8890	LRRC17	1.009263e-01
8891	LRRC18	1
8892	LRRC19	1
8893	LRRC2	2.201708e-02
8894	LRRC20	1
8895	LRRC23	1
8896	LRRC24	1
8897	LRRC25	1
8898	LRRC27	1
8899	LRRC28	1
8900	LRRC29	1
8901	LRRC3	1
8902	LRRC30	1
8903	LRRC31	1
8904	LRRC32	1
8905	LRRC33	1
8906	LRRC34	1
8907	LRRC36	2.660638e-02
8908	LRRC37A2	7.692531e-03
8909	LRRC37A3	1.316508e-01
8910	LRRC37B	1
8911	LRRC39	1
8912	LRRC3B	8.868127e-02
8913	LRRC4	1
8914	LRRC40	1
8915	LRRC41	1
8916	LRRC42	1
8917	LRRC43	6.458712e-02
8918	LRRC45	1
8919	LRRC46	1
8920	LRRC47	9.596026e-02
8921	LRRC48	1
8922	LRRC49	1.719254e-02
8923	LRRC4B	2.337680e-03
8924	LRRC4C	1
8925	LRRC50	1
8926	LRRC52	1
8927	LRRC55	1
8928	LRRC56	1
8929	LRRC57	1
8930	LRRC58	1
8931	LRRC59	1
8932	LRRC6	1
8933	LRRC61	1
8934	LRRC66	1
8935	LRRC67	1
8936	LRRC7	1
8937	LRRC8A	1
8938	LRRC8B	1
8939	LRRC8C	1
8940	LRRC8D	1
8941	LRRC8E	1
8942	LRRCC1	1
8943	LRRFIP1	1
8944	LRRFIP2	1
8945	LRRIQ1	1
8946	LRRIQ3	1.308466e-01
8947	LRRIQ4	1
8948	LRRK1	2.399582e-01
8949	LRRK2	1
8950	LRRN1	1
8951	LRRN2	1
8952	LRRN3	1
8953	LRRN4	1
8954	LRRN4CL	1
8955	LRRTM1	1
8956	LRRTM2	1
8957	LRRTM3	1
8958	LRRTM4	1
8959	LRSAM1	1
8960	LRTM1	1
8961	LRTM2	1
8962	LRTOMT	1
8963	LRWD1	1
8964	LSAMP	1
8965	LSG1	1
8966	LSM1	1
8967	LSM10	1
8968	LSM11	1
8969	LSM12	1
8970	LSM14A	1
8971	LSM14B	1
8972	LSM2	1
8973	LSM3	1
8974	LSM4	1
8975	LSM5	1
8976	LSM6	1
Done

Running MutSig 2:
Scatter job 99: processing genes 8887 - 8976
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
LRRC4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.216491e-02	ci left: 2.755719e-01	ci right 2.933539e-01	k: 2844	n:10000
Cons ci ratio: 4.432366e-02	ci left: 4.290429e-01	ci right 4.485928e-01	k: 4388	n:10000
KS ci ratio: 8.655262e-02	ci left: 1.627829e-01	ci right 1.776098e-01	k: 1701	n:10000
LRRC4B   10000 perm   2 sec   (4435 perm/sec)   p_kst 1.701000e-01   p_cons 4.388000e-01   p_joint 2.844000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC4B.3_2150_10000_0.1701_0.4388_0.2844.png
                gene_name: LRRC4B
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 25 percent done.
LRRC36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.565379e-02	ci left: 2.540943e-01	ci right 2.714441e-01	k: 2627	n:10000
KS ci ratio: 1.729419e-02	ci left: 8.297144e-01	ci right 8.442887e-01	k: 8371	n:10000
LRRC36   10000 perm   2 sec   (5841 perm/sec)   p_kst 8.371000e-01   p_cons 2.627000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000099/LRRC36.2_2349_10000_0.8371_0.2627_1.png
                gene_name: LRRC36
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
LRRC37A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.498839e-01	ci left: 9.148061e-04	ci right 2.597003e-03	k: 16	n:10000
Cons ci ratio: 3.649665e-02	ci left: 5.257659e-01	ci right 5.454134e-01	k: 5356	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
LRRC37A2   10000 perm   2 sec   (5042 perm/sec)   p_kst 1.000000e-04   p_cons 5.356000e-01   p_joint 1.600000e-03

Joint ci ratio: 5.481959e-01	ci left: 1.856100e-03	ci right 3.294626e-03	k: 50	n:20000
Cons ci ratio: 2.564581e-02	ci left: 5.318111e-01	ci right 5.456776e-01	k: 10775	n:20000
KS ci ratio: 1.752814e+00	ci left: 5.449587e-05	ci right 5.119995e-04	k: 4	n:20000
LRRC37A2   20000 perm   4 sec   (4562 perm/sec)   p_kst 2.000000e-04   p_cons 5.387500e-01   p_joint 2.500000e-03

Joint ci ratio: 3.090706e-01	ci left: 4.509917e-03	ci right 6.188071e-03	k: 159	n:30000
Cons ci ratio: 2.108032e-02	ci left: 5.297698e-01	ci right 5.410900e-01	k: 16063	n:30000
KS ci ratio: 1.306449e+00	ci left: 1.151345e-04	ci right 5.253717e-04	k: 8	n:30000
LRRC37A2   30000 perm   7 sec   (4389 perm/sec)   p_kst 2.666667e-04   p_cons 5.354333e-01   p_joint 5.300000e-03

Joint ci ratio: 3.368059e-01	ci left: 2.807559e-03	ci right 3.966389e-03	k: 134	n:40000
Cons ci ratio: 1.822635e-02	ci left: 5.313480e-01	ci right 5.411467e-01	k: 21450	n:40000
KS ci ratio: 1.131423e+00	ci left: 1.372867e-04	ci right 4.919976e-04	k: 11	n:40000
LRRC37A2   40000 perm   9 sec   (4276 perm/sec)   p_kst 2.750000e-04   p_cons 5.362500e-01   p_joint 3.350000e-03

Joint ci ratio: 3.699864e-01	ci left: 1.826608e-03	ci right 2.672846e-03	k: 111	n:50000
Cons ci ratio: 1.635509e-02	ci left: 5.302560e-01	ci right 5.390200e-01	k: 26732	n:50000
KS ci ratio: 1.131459e+00	ci left: 1.098282e-04	ci right 3.936066e-04	k: 11	n:50000
LRRC37A2   50000 perm   12 sec   (4182 perm/sec)   p_kst 2.200000e-04   p_cons 5.346400e-01   p_joint 2.220000e-03

Joint ci ratio: 3.976905e-01	ci left: 1.296191e-03	ci right 1.953528e-03	k: 96	n:60000
Cons ci ratio: 1.490587e-02	ci left: 5.314493e-01	ci right 5.394472e-01	k: 32127	n:60000
KS ci ratio: 1.047533e+00	ci left: 1.153708e-04	ci right 3.704781e-04	k: 13	n:60000
LRRC37A2   60000 perm   15 sec   (4066 perm/sec)   p_kst 2.166667e-04   p_cons 5.354500e-01   p_joint 1.600000e-03

Joint ci ratio: 3.668399e-01	ci left: 1.330579e-03	ci right 1.940500e-03	k: 113	n:70000
Cons ci ratio: 1.382618e-02	ci left: 5.308106e-01	ci right 5.382151e-01	k: 37416	n:70000
KS ci ratio: 9.238275e-01	ci left: 1.414794e-04	ci right 3.888094e-04	k: 17	n:70000
LRRC37A2   70000 perm   18 sec   (3974 perm/sec)   p_kst 2.428571e-04   p_cons 5.345143e-01   p_joint 1.614286e-03

Joint ci ratio: 4.976444e-01	ci left: 5.833007e-04	ci right 9.793569e-04	k: 61	n:80000
Cons ci ratio: 1.294921e-02	ci left: 5.304358e-01	ci right 5.373618e-01	k: 42712	n:80000
KS ci ratio: 8.172539e-01	ci left: 1.723488e-04	ci right 4.163239e-04	k: 22	n:80000
LRRC37A2   80000 perm   21 sec   (3847 perm/sec)   p_kst 2.750000e-04   p_cons 5.339000e-01   p_joint 7.625000e-04

Joint ci ratio: 4.717290e-01	ci left: 5.867647e-04	ci right 9.577498e-04	k: 68	n:90000
Cons ci ratio: 1.219748e-02	ci left: 5.310901e-01	ci right 5.376188e-01	k: 48092	n:90000
KS ci ratio: 7.838868e-01	ci left: 1.708656e-04	ci right 3.967530e-04	k: 24	n:90000
LRRC37A2   90000 perm   24 sec   (3786 perm/sec)   p_kst 2.666667e-04   p_cons 5.343556e-01   p_joint 7.555556e-04

Joint ci ratio: 4.494817e-01	ci left: 5.899669e-04	ci right 9.400421e-04	k: 75	n:100000
Cons ci ratio: 1.156681e-02	ci left: 5.314625e-01	ci right 5.376555e-01	k: 53456	n:100000
KS ci ratio: 7.686715e-01	ci left: 1.617931e-04	ci right 3.690273e-04	k: 25	n:100000
LRRC37A2   100000 perm   27 sec   (3733 perm/sec)   p_kst 2.500000e-04   p_cons 5.345600e-01   p_joint 7.500000e-04

Joint ci ratio: 2.689659e-01	ci left: 1.668279e-03	ci right 2.194901e-03	k: 211	n:110000
Cons ci ratio: 1.102423e-02	ci left: 5.318015e-01	ci right 5.377058e-01	k: 58823	n:110000
KS ci ratio: 7.039504e-01	ci left: 1.840153e-04	ci right 3.893124e-04	k: 30	n:110000
LRRC37A2   110000 perm   30 sec   (3677 perm/sec)   p_kst 2.727273e-04   p_cons 5.347545e-01   p_joint 1.918182e-03

Joint ci ratio: 2.571106e-01	ci left: 1.684940e-03	ci right 2.189617e-03	k: 231	n:120000
Cons ci ratio: 1.055465e-02	ci left: 5.319396e-01	ci right 5.375921e-01	k: 64172	n:120000
KS ci ratio: 6.822877e-01	ci left: 1.824067e-04	ci right 3.764331e-04	k: 32	n:120000
LRRC37A2   120000 perm   33 sec   (3625 perm/sec)   p_kst 2.666667e-04   p_cons 5.347667e-01   p_joint 1.925000e-03

Joint ci ratio: 3.198807e-01	ci left: 9.695923e-04	ci right 1.345537e-03	k: 149	n:130000
Cons ci ratio: 1.014148e-02	ci left: 5.320071e-01	ci right 5.374375e-01	k: 69514	n:130000
KS ci ratio: 6.358126e-01	ci left: 2.004032e-04	ci right 3.922837e-04	k: 37	n:130000
LRRC37A2   130000 perm   36 sec   (3573 perm/sec)   p_kst 2.846154e-04   p_cons 5.347231e-01   p_joint 1.146154e-03

Joint ci ratio: 3.198940e-01	ci left: 9.003303e-04	ci right 1.249436e-03	k: 149	n:140000
Cons ci ratio: 9.787911e-03	ci left: 5.313255e-01	ci right 5.365588e-01	k: 74752	n:140000
KS ci ratio: 6.121093e-01	ci left: 2.041261e-04	ci right 3.890417e-04	k: 40	n:140000
LRRC37A2   140000 perm   40 sec   (3525 perm/sec)   p_kst 2.857143e-04   p_cons 5.339429e-01   p_joint 1.064286e-03

Joint ci ratio: 3.097369e-01	ci left: 9.017093e-04	ci right 1.238056e-03	k: 159	n:150000
Cons ci ratio: 9.462923e-03	ci left: 5.310514e-01	ci right 5.361073e-01	k: 80037	n:150000
KS ci ratio: 5.778819e-01	ci left: 2.188302e-04	ci right 4.014032e-04	k: 45	n:150000
LRRC37A2   150000 perm   43 sec   (3478 perm/sec)   p_kst 3.000000e-04   p_cons 5.335800e-01   p_joint 1.060000e-03

Joint ci ratio: 2.970119e-01	ci left: 9.261972e-04	ci right 1.254813e-03	k: 173	n:160000
Cons ci ratio: 9.167942e-03	ci left: 5.308330e-01	ci right 5.357283e-01	k: 85325	n:160000
KS ci ratio: 5.488206e-01	ci left: 2.319521e-04	ci right 4.119718e-04	k: 50	n:160000
LRRC37A2   160000 perm   47 sec   (3432 perm/sec)   p_kst 3.125000e-04   p_cons 5.332813e-01   p_joint 1.081250e-03

Joint ci ratio: 2.904133e-01	ci left: 9.153065e-04	ci right 1.231517e-03	k: 181	n:170000
Cons ci ratio: 8.897558e-03	ci left: 5.307190e-01	ci right 5.354681e-01	k: 90626	n:170000
KS ci ratio: 5.435214e-01	ci left: 2.233776e-04	ci right 3.944260e-04	k: 51	n:170000
LRRC37A2   170000 perm   50 sec   (3389 perm/sec)   p_kst 3.000000e-04   p_cons 5.330941e-01   p_joint 1.064706e-03

Joint ci ratio: 2.791348e-01	ci left: 9.418421e-04	ci right 1.252364e-03	k: 196	n:180000
Cons ci ratio: 8.648897e-03	ci left: 5.306697e-01	ci right 5.352848e-01	k: 95936	n:180000
KS ci ratio: 5.018181e-01	ci left: 2.543778e-04	ci right 4.290455e-04	k: 60	n:180000
LRRC37A2   180000 perm   54 sec   (3347 perm/sec)   p_kst 3.333333e-04   p_cons 5.329778e-01   p_joint 1.088889e-03

Joint ci ratio: 2.920403e-01	ci left: 8.091942e-04	ci right 1.090601e-03	k: 179	n:190000
Cons ci ratio: 8.422742e-03	ci left: 5.304640e-01	ci right 5.349561e-01	k: 101215	n:190000
KS ci ratio: 4.788185e-01	ci left: 2.686646e-04	ci right 4.419169e-04	k: 66	n:190000
LRRC37A2   190000 perm   57 sec   (3306 perm/sec)   p_kst 3.473684e-04   p_cons 5.327105e-01   p_joint 9.421053e-04

Joint ci ratio: 2.880701e-01	ci left: 7.919148e-04	ci right 1.062887e-03	k: 184	n:200000
Cons ci ratio: 8.212619e-03	ci left: 5.303304e-01	ci right 5.347087e-01	k: 106504	n:200000
KS ci ratio: 4.651347e-01	ci left: 2.728520e-04	ci right 4.421836e-04	k: 70	n:200000
LRRC37A2   200000 perm   61 sec   (3266 perm/sec)   p_kst 3.500000e-04   p_cons 5.325200e-01   p_joint 9.200000e-04

Joint ci ratio: 2.813089e-01	ci left: 7.940024e-04	ci right 1.058182e-03	k: 193	n:210000
Cons ci ratio: 8.008506e-03	ci left: 5.307681e-01	ci right 5.350405e-01	k: 111910	n:210000
KS ci ratio: 4.409504e-01	ci left: 2.936096e-04	ci right 4.635383e-04	k: 78	n:210000
LRRC37A2   210000 perm   65 sec   (3227 perm/sec)   p_kst 3.714286e-04   p_cons 5.329048e-01   p_joint 9.190476e-04

Joint ci ratio: 2.756830e-01	ci left: 7.917358e-04	ci right 1.048979e-03	k: 201	n:220000
Cons ci ratio: 7.821169e-03	ci left: 5.310217e-01	ci right 5.351957e-01	k: 117284	n:220000
KS ci ratio: 4.301937e-01	ci left: 2.964517e-04	ci right 4.626320e-04	k: 82	n:220000
LRRC37A2   220000 perm   69 sec   (3189 perm/sec)   p_kst 3.727273e-04   p_cons 5.331091e-01   p_joint 9.136364e-04

Joint ci ratio: 2.659808e-01	ci left: 8.181045e-04	ci right 1.073003e-03	k: 216	n:230000
Cons ci ratio: 7.651869e-03	ci left: 5.308976e-01	ci right 5.349798e-01	k: 122576	n:230000
KS ci ratio: 4.177925e-01	ci left: 3.029822e-04	ci right 4.665628e-04	k: 87	n:230000
LRRC37A2   230000 perm   73 sec   (3151 perm/sec)   p_kst 3.782609e-04   p_cons 5.329391e-01   p_joint 9.391304e-04

Joint ci ratio: 2.572357e-01	ci left: 8.424209e-04	ci right 1.094881e-03	k: 231	n:240000
Cons ci ratio: 7.489970e-03	ci left: 5.309932e-01	ci right 5.349894e-01	k: 127918	n:240000
KS ci ratio: 4.131259e-01	ci left: 2.978199e-04	ci right 4.563228e-04	k: 89	n:240000
LRRC37A2   240000 perm   77 sec   (3108 perm/sec)   p_kst 3.708333e-04   p_cons 5.329917e-01   p_joint 9.625000e-04

Joint ci ratio: 3.157847e-01	ci left: 5.188918e-04	ci right 7.169839e-04	k: 153	n:250000
Cons ci ratio: 7.338049e-03	ci left: 5.310739e-01	ci right 5.349893e-01	k: 133258	n:250000
KS ci ratio: 4.042403e-01	ci left: 3.002622e-04	ci right 4.557061e-04	k: 93	n:250000
LRRC37A2   250000 perm   81 sec   (3069 perm/sec)   p_kst 3.720000e-04   p_cons 5.330320e-01   p_joint 6.120000e-04

Joint ci ratio: 3.117631e-01	ci left: 5.131075e-04	ci right 7.060002e-04	k: 157	n:260000
Cons ci ratio: 7.195179e-03	ci left: 5.311377e-01	ci right 5.349769e-01	k: 138595	n:260000
KS ci ratio: 4.021093e-01	ci left: 2.921695e-04	ci right 4.424136e-04	k: 94	n:260000
LRRC37A2   260000 perm   86 sec   (3035 perm/sec)   p_kst 3.615385e-04   p_cons 5.330577e-01   p_joint 6.038462e-04

Joint ci ratio: 3.078913e-01	ci left: 5.077664e-04	ci right 6.958154e-04	k: 161	n:270000
Cons ci ratio: 7.064913e-03	ci left: 5.308751e-01	ci right 5.346427e-01	k: 143845	n:270000
KS ci ratio: 3.959072e-01	ci left: 2.913444e-04	ci right 4.382485e-04	k: 97	n:270000
LRRC37A2   270000 perm   90 sec   (3002 perm/sec)   p_kst 3.592593e-04   p_cons 5.327593e-01   p_joint 5.962963e-04

Joint ci ratio: 3.014469e-01	ci left: 5.127213e-04	ci right 6.978696e-04	k: 168	n:280000
Cons ci ratio: 6.934254e-03	ci left: 5.311499e-01	ci right 5.348494e-01	k: 149240	n:280000
KS ci ratio: 3.861773e-01	ci left: 2.970409e-04	ci right 4.422008e-04	k: 102	n:280000
LRRC37A2   280000 perm   94 sec   (2969 perm/sec)   p_kst 3.642857e-04   p_cons 5.330000e-01   p_joint 6.000000e-04

Joint ci ratio: 2.953909e-01	ci left: 5.173726e-04	ci right 6.997445e-04	k: 175	n:290000
Cons ci ratio: 6.811385e-03	ci left: 5.313477e-01	ci right 5.349827e-01	k: 154618	n:290000
KS ci ratio: 3.843180e-01	ci left: 2.899122e-04	ci right 4.307336e-04	k: 103	n:290000
LRRC37A2   290000 perm   99 sec   (2929 perm/sec)   p_kst 3.551724e-04   p_cons 5.331655e-01   p_joint 6.034483e-04

Joint ci ratio: 2.896859e-01	ci left: 5.217485e-04	ci right 7.014600e-04	k: 182	n:300000
Cons ci ratio: 6.698725e-03	ci left: 5.312427e-01	ci right 5.348166e-01	k: 159909	n:300000
KS ci ratio: 3.788925e-01	ci left: 2.892892e-04	ci right 4.273307e-04	k: 106	n:300000
LRRC37A2   300000 perm   104 sec   (2897 perm/sec)   p_kst 3.533333e-04   p_cons 5.330300e-01   p_joint 6.066667e-04

Joint ci ratio: 2.842991e-01	ci left: 5.258736e-04	ci right 7.030335e-04	k: 189	n:310000
Cons ci ratio: 6.590706e-03	ci left: 5.312031e-01	ci right 5.347189e-01	k: 165218	n:310000
KS ci ratio: 3.720027e-01	ci left: 2.916430e-04	ci right 4.276610e-04	k: 110	n:310000
LRRC37A2   310000 perm   108 sec   (2867 perm/sec)   p_kst 3.548387e-04   p_cons 5.329613e-01   p_joint 6.096774e-04

Joint ci ratio: 2.799138e-01	ci left: 5.268637e-04	ci right 7.011367e-04	k: 195	n:320000
Cons ci ratio: 6.486853e-03	ci left: 5.312352e-01	ci right 5.346955e-01	k: 170549	n:320000
KS ci ratio: 3.686969e-01	ci left: 2.881974e-04	ci right 4.211260e-04	k: 112	n:320000
LRRC37A2   320000 perm   113 sec   (2838 perm/sec)   p_kst 3.500000e-04   p_cons 5.329656e-01   p_joint 6.093750e-04

Joint ci ratio: 2.764108e-01	ci left: 5.249929e-04	ci right 6.960959e-04	k: 200	n:330000
Cons ci ratio: 6.389471e-03	ci left: 5.311323e-01	ci right 5.345398e-01	k: 175836	n:330000
KS ci ratio: 3.608002e-01	ci left: 2.932273e-04	ci right 4.248985e-04	k: 117	n:330000
LRRC37A2   330000 perm   118 sec   (2808 perm/sec)   p_kst 3.545455e-04   p_cons 5.328364e-01   p_joint 6.060606e-04

Joint ci ratio: 2.737017e-01	ci left: 5.205051e-04	ci right 6.881968e-04	k: 204	n:340000
Cons ci ratio: 6.293185e-03	ci left: 5.312860e-01	ci right 5.346429e-01	k: 181208	n:340000
KS ci ratio: 3.577817e-01	ci left: 2.899543e-04	ci right 4.188128e-04	k: 119	n:340000
LRRC37A2   340000 perm   122 sec   (2779 perm/sec)   p_kst 3.500000e-04   p_cons 5.329647e-01   p_joint 6.000000e-04

Joint ci ratio: 2.704241e-01	ci left: 5.189448e-04	ci right 6.837919e-04	k: 209	n:350000
Cons ci ratio: 6.203758e-03	ci left: 5.312197e-01	ci right 5.345283e-01	k: 186506	n:350000
KS ci ratio: 3.548378e-01	ci left: 2.868726e-04	ci right 4.130705e-04	k: 121	n:350000
LRRC37A2   350000 perm   127 sec   (2750 perm/sec)   p_kst 3.457143e-04   p_cons 5.328743e-01   p_joint 5.971429e-04

Joint ci ratio: 2.666418e-01	ci left: 5.200745e-04	ci right 6.825837e-04	k: 215	n:360000
Cons ci ratio: 6.118072e-03	ci left: 5.311547e-01	ci right 5.344170e-01	k: 191803	n:360000
KS ci ratio: 3.505541e-01	ci left: 2.864990e-04	ci right 4.106650e-04	k: 124	n:360000
LRRC37A2   360000 perm   132 sec   (2722 perm/sec)   p_kst 3.444444e-04   p_cons 5.327861e-01   p_joint 5.972222e-04

Joint ci ratio: 2.612535e-01	ci left: 5.287338e-04	ci right 6.900650e-04	k: 224	n:370000
Cons ci ratio: 6.032827e-03	ci left: 5.313422e-01	ci right 5.345600e-01	k: 197192	n:370000
KS ci ratio: 3.437459e-01	ci left: 2.910913e-04	ci right 4.142529e-04	k: 129	n:370000
LRRC37A2   370000 perm   137 sec   (2693 perm/sec)   p_kst 3.486486e-04   p_cons 5.329514e-01   p_joint 6.054054e-04

Joint ci ratio: 2.545516e-01	ci left: 5.443584e-04	ci right 7.055201e-04	k: 236	n:380000
Cons ci ratio: 5.951960e-03	ci left: 5.314437e-01	ci right 5.346189e-01	k: 202552	n:380000
KS ci ratio: 3.424325e-01	ci left: 2.858357e-04	ci right 4.062092e-04	k: 130	n:380000
LRRC37A2   380000 perm   143 sec   (2666 perm/sec)   p_kst 3.421053e-04   p_cons 5.330316e-01   p_joint 6.210526e-04

Joint ci ratio: 3.221605e-01	ci left: 3.184642e-04	ci right 4.430022e-04	k: 147	n:390000
Cons ci ratio: 5.874411e-03	ci left: 5.315276e-01	ci right 5.346617e-01	k: 207907	n:390000
KS ci ratio: 3.411340e-01	ci left: 2.808505e-04	ci right 3.985772e-04	k: 131	n:390000
LRRC37A2   390000 perm   148 sec   (2639 perm/sec)   p_kst 3.358974e-04   p_cons 5.330949e-01   p_joint 3.769231e-04

Joint ci ratio: 3.178932e-01	ci left: 3.196994e-04	ci right 4.427276e-04	k: 151	n:400000
Cons ci ratio: 5.802409e-03	ci left: 5.313849e-01	ci right 5.344796e-01	k: 213173	n:400000
KS ci ratio: 3.289003e-01	ci left: 2.967275e-04	ci right 4.157067e-04	k: 141	n:400000
LRRC37A2   400000 perm   153 sec   (2613 perm/sec)   p_kst 3.525000e-04   p_cons 5.329325e-01   p_joint 3.775000e-04

Joint ci ratio: 3.148021e-01	ci left: 3.186380e-04	ci right 4.398256e-04	k: 154	n:410000
Cons ci ratio: 5.729648e-03	ci left: 5.315397e-01	ci right 5.345964e-01	k: 218558	n:410000
KS ci ratio: 3.243633e-01	ci left: 2.984465e-04	ci right 4.161207e-04	k: 145	n:410000
LRRC37A2   410000 perm   158 sec   (2587 perm/sec)   p_kst 3.536585e-04   p_cons 5.330683e-01   p_joint 3.756098e-04

Joint ci ratio: 3.137925e-01	ci left: 3.132444e-04	ci right 4.319219e-04	k: 155	n:420000
Cons ci ratio: 5.661533e-03	ci left: 5.315136e-01	ci right 5.345336e-01	k: 223870	n:420000
KS ci ratio: 3.221649e-01	ci left: 2.957161e-04	ci right 4.113602e-04	k: 147	n:420000
LRRC37A2   420000 perm   164 sec   (2561 perm/sec)   p_kst 3.500000e-04   p_cons 5.330238e-01   p_joint 3.690476e-04

Joint ci ratio: 3.118008e-01	ci left: 3.102457e-04	ci right 4.268924e-04	k: 157	n:430000
Cons ci ratio: 5.594171e-03	ci left: 5.316330e-01	ci right 5.346177e-01	k: 229244	n:430000
KS ci ratio: 3.189487e-01	ci left: 2.952545e-04	ci right 4.093299e-04	k: 150	n:430000
LRRC37A2   430000 perm   170 sec   (2536 perm/sec)   p_kst 3.488372e-04   p_cons 5.331256e-01   p_joint 3.651163e-04

Joint ci ratio: 3.079272e-01	ci left: 3.115788e-04	ci right 4.269858e-04	k: 161	n:440000
Cons ci ratio: 5.529712e-03	ci left: 5.316973e-01	ci right 5.346478e-01	k: 234596	n:440000
KS ci ratio: 3.168578e-01	ci left: 2.927269e-04	ci right 4.049340e-04	k: 152	n:440000
LRRC37A2   440000 perm   175 sec   (2512 perm/sec)   p_kst 3.454545e-04   p_cons 5.331727e-01   p_joint 3.659091e-04

Joint ci ratio: 3.060445e-01	ci left: 3.087569e-04	ci right 4.222831e-04	k: 163	n:450000
Cons ci ratio: 5.467871e-03	ci left: 5.317188e-01	ci right 5.346363e-01	k: 239930	n:450000
KS ci ratio: 3.148074e-01	ci left: 2.903140e-04	ci right 4.007311e-04	k: 154	n:450000
LRRC37A2   450000 perm   181 sec   (2489 perm/sec)   p_kst 3.422222e-04   p_cons 5.331778e-01   p_joint 3.622222e-04

Joint ci ratio: 3.005944e-01	ci left: 3.140959e-04	ci right 4.271359e-04	k: 169	n:460000
Cons ci ratio: 5.406949e-03	ci left: 5.318418e-01	ci right 5.347274e-01	k: 245311	n:460000
KS ci ratio: 3.088849e-01	ci left: 2.960258e-04	ci right 4.060802e-04	k: 160	n:460000
LRRC37A2   460000 perm   187 sec   (2466 perm/sec)   p_kst 3.478261e-04   p_cons 5.332848e-01   p_joint 3.673913e-04

Joint ci ratio: 2.988422e-01	ci left: 3.113483e-04	ci right 4.226224e-04	k: 171	n:470000
Cons ci ratio: 5.349093e-03	ci left: 5.318597e-01	ci right 5.347144e-01	k: 250645	n:470000
KS ci ratio: 3.079309e-01	ci left: 2.916903e-04	ci right 3.997322e-04	k: 161	n:470000
LRRC37A2   470000 perm   192 sec   (2444 perm/sec)   p_kst 3.425532e-04   p_cons 5.332872e-01   p_joint 3.638298e-04

Joint ci ratio: 2.301205e-01	ci left: 5.346792e-04	ci right 6.756289e-04	k: 289	n:480000
Cons ci ratio: 5.293033e-03	ci left: 5.318791e-01	ci right 5.347038e-01	k: 255980	n:480000
KS ci ratio: 3.060480e-01	ci left: 2.894591e-04	ci right 3.958912e-04	k: 163	n:480000
LRRC37A2   480000 perm   198 sec   (2421 perm/sec)   p_kst 3.395833e-04   p_cons 5.332917e-01   p_joint 6.020833e-04

Joint ci ratio: 2.285502e-01	ci left: 5.314616e-04	ci right 6.704722e-04	k: 293	n:490000
Cons ci ratio: 5.239215e-03	ci left: 5.318488e-01	ci right 5.346446e-01	k: 261291	n:490000
KS ci ratio: 3.051199e-01	ci left: 2.854361e-04	ci right 3.900087e-04	k: 164	n:490000
LRRC37A2   490000 perm   204 sec   (2399 perm/sec)   p_kst 3.346939e-04   p_cons 5.332469e-01   p_joint 5.979592e-04

Joint ci ratio: 2.266314e-01	ci left: 5.302622e-04	ci right 6.676319e-04	k: 298	n:500000
Cons ci ratio: 5.186297e-03	ci left: 5.318880e-01	ci right 5.346556e-01	k: 266636	n:500000
KS ci ratio: 3.032877e-01	ci left: 2.834220e-04	ci right 3.865130e-04	k: 166	n:500000
LRRC37A2   500000 perm   210 sec   (2377 perm/sec)   p_kst 3.320000e-04   p_cons 5.332720e-01   p_joint 5.960000e-04

Joint ci ratio: 2.897225e-01	ci left: 3.069057e-04	ci right 4.126316e-04	k: 182	n:510000
Cons ci ratio: 5.134850e-03	ci left: 5.319355e-01	ci right 5.346759e-01	k: 271986	n:510000
KS ci ratio: 3.005999e-01	ci left: 2.833015e-04	ci right 3.852610e-04	k: 169	n:510000
LRRC37A2   510000 perm   217 sec   (2356 perm/sec)   p_kst 3.313725e-04   p_cons 5.333059e-01   p_joint 3.568627e-04

Joint ci ratio: 2.881526e-01	ci left: 3.045711e-04	ci right 4.088206e-04	k: 184	n:520000
Cons ci ratio: 5.084728e-03	ci left: 5.319987e-01	ci right 5.347125e-01	k: 277345	n:520000
KS ci ratio: 2.929438e-01	ci left: 2.938731e-04	ci right 3.964440e-04	k: 178	n:520000
LRRC37A2   520000 perm   223 sec   (2335 perm/sec)   p_kst 3.423077e-04   p_cons 5.333558e-01   p_joint 3.538462e-04

Joint ci ratio: 2.858444e-01	ci left: 3.040774e-04	ci right 4.071737e-04	k: 187	n:530000
Cons ci ratio: 5.036293e-03	ci left: 5.320350e-01	ci right 5.347231e-01	k: 282691	n:530000
KS ci ratio: 2.921297e-01	ci left: 2.900766e-04	ci right 3.909889e-04	k: 179	n:530000
LRRC37A2   530000 perm   229 sec   (2314 perm/sec)   p_kst 3.377358e-04   p_cons 5.333792e-01   p_joint 3.528302e-04

Joint ci ratio: 2.828511e-01	ci left: 3.053256e-04	ci right 4.075676e-04	k: 191	n:540000
Cons ci ratio: 4.989885e-03	ci left: 5.320035e-01	ci right 5.346665e-01	k: 288001	n:540000
KS ci ratio: 2.905205e-01	ci left: 2.881379e-04	ci right 3.877220e-04	k: 181	n:540000
LRRC37A2   540000 perm   235 sec   (2294 perm/sec)   p_kst 3.351852e-04   p_cons 5.333352e-01   p_joint 3.537037e-04

Joint ci ratio: 2.813897e-01	ci left: 3.031533e-04	ci right 4.040504e-04	k: 193	n:550000
Cons ci ratio: 4.944555e-03	ci left: 5.319914e-01	ci right 5.346301e-01	k: 293321	n:550000
KS ci ratio: 2.873795e-01	ci left: 2.896447e-04	ci right 3.884709e-04	k: 185	n:550000
LRRC37A2   550000 perm   242 sec   (2275 perm/sec)   p_kst 3.363636e-04   p_cons 5.333109e-01   p_joint 3.509091e-04

Joint ci ratio: 2.771361e-01	ci left: 3.077040e-04	ci right 4.082977e-04	k: 199	n:560000
Cons ci ratio: 4.902356e-03	ci left: 5.317851e-01	ci right 5.344003e-01	k: 298532	n:560000
KS ci ratio: 2.850897e-01	ci left: 2.894451e-04	ci right 3.872746e-04	k: 188	n:560000
LRRC37A2   560000 perm   248 sec   (2255 perm/sec)   p_kst 3.357143e-04   p_cons 5.330929e-01   p_joint 3.553571e-04

Joint ci ratio: 2.750808e-01	ci left: 3.072045e-04	ci right 4.067612e-04	k: 202	n:570000
Cons ci ratio: 4.858956e-03	ci left: 5.318178e-01	ci right 5.344099e-01	k: 303875	n:570000
KS ci ratio: 2.828537e-01	ci left: 2.892555e-04	ci right 3.861173e-04	k: 191	n:570000
LRRC37A2   570000 perm   255 sec   (2236 perm/sec)   p_kst 3.350877e-04   p_cons 5.331140e-01   p_joint 3.543860e-04

Joint ci ratio: 2.711030e-01	ci left: 3.115445e-04	ci right 4.107993e-04	k: 208	n:580000
Cons ci ratio: 4.816805e-03	ci left: 5.318374e-01	ci right 5.344071e-01	k: 309211	n:580000
KS ci ratio: 2.785345e-01	ci left: 2.938852e-04	ci right 3.905310e-04	k: 197	n:580000
LRRC37A2   580000 perm   262 sec   (2217 perm/sec)   p_kst 3.396552e-04   p_cons 5.331224e-01   p_joint 3.586207e-04

Joint ci ratio: 2.679169e-01	ci left: 3.141662e-04	ci right 4.128823e-04	k: 213	n:590000
Cons ci ratio: 4.775538e-03	ci left: 5.318768e-01	ci right 5.344246e-01	k: 314559	n:590000
KS ci ratio: 2.757628e-01	ci left: 2.952126e-04	ci right 3.911614e-04	k: 201	n:590000
LRRC37A2   590000 perm   268 sec   (2199 perm/sec)   p_kst 3.406780e-04   p_cons 5.331508e-01   p_joint 3.610169e-04

Joint ci ratio: 2.642377e-01	ci left: 3.182632e-04	ci right 4.166663e-04	k: 219	n:600000
Cons ci ratio: 4.735979e-03	ci left: 5.318450e-01	ci right 5.343714e-01	k: 319865	n:600000
KS ci ratio: 2.724116e-01	ci left: 2.980532e-04	ci right 3.935465e-04	k: 206	n:600000
LRRC37A2   600000 perm   275 sec   (2181 perm/sec)   p_kst 3.433333e-04   p_cons 5.331083e-01   p_joint 3.650000e-04

Joint ci ratio: 2.612849e-01	ci left: 3.207027e-04	ci right 4.185710e-04	k: 224	n:610000
Cons ci ratio: 4.696599e-03	ci left: 5.318979e-01	ci right 5.344035e-01	k: 325222	n:610000
KS ci ratio: 2.685469e-01	ci left: 3.023363e-04	ci right 3.975963e-04	k: 212	n:610000
LRRC37A2   610000 perm   282 sec   (2163 perm/sec)   p_kst 3.475410e-04   p_cons 5.331508e-01   p_joint 3.672131e-04

Joint ci ratio: 2.601317e-01	ci left: 3.185451e-04	ci right 4.152560e-04	k: 226	n:620000
Cons ci ratio: 4.659029e-03	ci left: 5.318588e-01	ci right 5.343441e-01	k: 330523	n:620000
KS ci ratio: 2.672952e-01	ci left: 3.004690e-04	ci right 3.946255e-04	k: 214	n:620000
LRRC37A2   620000 perm   289 sec   (2145 perm/sec)   p_kst 3.451613e-04   p_cons 5.331016e-01   p_joint 3.645161e-04

Joint ci ratio: 2.567600e-01	ci left: 3.223958e-04	ci right 4.188039e-04	k: 232	n:630000
Cons ci ratio: 4.622244e-03	ci left: 5.318322e-01	ci right 5.342977e-01	k: 335831	n:630000
KS ci ratio: 2.642400e-01	ci left: 3.031075e-04	ci right 3.968255e-04	k: 219	n:630000
LRRC37A2   630000 perm   296 sec   (2126 perm/sec)   p_kst 3.476190e-04   p_cons 5.330651e-01   p_joint 3.682540e-04

Joint ci ratio: 2.551230e-01	ci left: 3.217452e-04	ci right 4.172477e-04	k: 235	n:640000
Cons ci ratio: 4.586260e-03	ci left: 5.318127e-01	ci right 5.342589e-01	k: 341143	n:640000
KS ci ratio: 2.618700e-01	ci left: 3.042094e-04	ci right 3.972863e-04	k: 223	n:640000
LRRC37A2   640000 perm   303 sec   (2109 perm/sec)   p_kst 3.484375e-04   p_cons 5.330359e-01   p_joint 3.671875e-04

Joint ci ratio: 2.524624e-01	ci left: 3.239984e-04	ci right 4.190090e-04	k: 240	n:650000
Cons ci ratio: 4.551384e-03	ci left: 5.317631e-01	ci right 5.341904e-01	k: 346435	n:650000
KS ci ratio: 2.595626e-01	ci left: 3.052810e-04	ci right 3.977292e-04	k: 227	n:650000
LRRC37A2   650000 perm   311 sec   (2090 perm/sec)   p_kst 3.492308e-04   p_cons 5.329769e-01   p_joint 3.692308e-04

Joint ci ratio: 1.954521e-01	ci left: 5.495721e-04	ci right 6.700330e-04	k: 401	n:660000
Cons ci ratio: 4.516013e-03	ci left: 5.318561e-01	ci right 5.342649e-01	k: 351820	n:660000
KS ci ratio: 2.589958e-01	ci left: 3.020721e-04	ci right 3.933166e-04	k: 228	n:660000
LRRC37A2   660000 perm   318 sec   (2074 perm/sec)   p_kst 3.454545e-04   p_cons 5.330606e-01   p_joint 6.075758e-04

Joint ci ratio: 1.935356e-01	ci left: 5.527285e-04	ci right 6.725534e-04	k: 409	n:670000
Cons ci ratio: 4.482636e-03	ci left: 5.318149e-01	ci right 5.342057e-01	k: 357117	n:670000
KS ci ratio: 2.562135e-01	ci left: 3.045445e-04	ci right 3.953896e-04	k: 233	n:670000
LRRC37A2   670000 perm   326 sec   (2057 perm/sec)   p_kst 3.477612e-04   p_cons 5.330104e-01   p_joint 6.104478e-04

Joint ci ratio: 1.928319e-01	ci left: 5.487984e-04	ci right 6.672879e-04	k: 412	n:680000
Cons ci ratio: 4.450002e-03	ci left: 5.317736e-01	ci right 5.341467e-01	k: 362413	n:680000
KS ci ratio: 2.551258e-01	ci left: 3.028186e-04	ci right 3.927043e-04	k: 235	n:680000
LRRC37A2   680000 perm   333 sec   (2041 perm/sec)   p_kst 3.455882e-04   p_cons 5.329603e-01   p_joint 6.058824e-04

Joint ci ratio: 1.914462e-01	ci left: 5.491222e-04	ci right 6.667305e-04	k: 418	n:690000
Cons ci ratio: 4.416900e-03	ci left: 5.318654e-01	ci right 5.342212e-01	k: 367800	n:690000
KS ci ratio: 2.535196e-01	ci left: 3.025006e-04	ci right 3.916373e-04	k: 238	n:690000
LRRC37A2   690000 perm   341 sec   (2025 perm/sec)   p_kst 3.449275e-04   p_cons 5.330435e-01   p_joint 6.057971e-04

Joint ci ratio: 1.900901e-01	ci left: 5.494397e-04	ci right 6.661861e-04	k: 424	n:700000
Cons ci ratio: 4.385734e-03	ci left: 5.318175e-01	ci right 5.341565e-01	k: 373091	n:700000
KS ci ratio: 2.529914e-01	ci left: 2.995170e-04	ci right 3.875616e-04	k: 239	n:700000
LRRC37A2   700000 perm   348 sec   (2010 perm/sec)   p_kst 3.414286e-04   p_cons 5.329871e-01   p_joint 6.057143e-04

Joint ci ratio: 1.883256e-01	ci left: 5.524351e-04	ci right 6.686037e-04	k: 432	n:710000
Cons ci ratio: 4.355045e-03	ci left: 5.317908e-01	ci right 5.341132e-01	k: 378396	n:710000
KS ci ratio: 2.519440e-01	ci left: 2.979371e-04	ci right 3.850978e-04	k: 241	n:710000
LRRC37A2   710000 perm   356 sec   (1994 perm/sec)   p_kst 3.394366e-04   p_cons 5.329521e-01   p_joint 6.084507e-04

Joint ci ratio: 1.861874e-01	ci left: 5.580003e-04	ci right 6.738566e-04	k: 442	n:720000
Cons ci ratio: 4.324111e-03	ci left: 5.318662e-01	ci right 5.341724e-01	k: 383774	n:720000
KS ci ratio: 2.488772e-01	ci left: 3.016096e-04	ci right 3.886044e-04	k: 247	n:720000
LRRC37A2   720000 perm   364 sec   (1979 perm/sec)   p_kst 3.430556e-04   p_cons 5.330194e-01   p_joint 6.138889e-04

Joint ci ratio: 1.845284e-01	ci left: 5.608070e-04	ci right 6.760924e-04	k: 450	n:730000
Cons ci ratio: 4.294690e-03	ci left: 5.318396e-01	ci right 5.341300e-01	k: 389079	n:730000
KS ci ratio: 2.468940e-01	ci left: 3.026171e-04	ci right 3.891001e-04	k: 251	n:730000
LRRC37A2   730000 perm   372 sec   (1964 perm/sec)   p_kst 3.438356e-04   p_cons 5.329849e-01   p_joint 6.164384e-04

Joint ci ratio: 1.817284e-01	ci left: 5.712805e-04	ci right 6.867409e-04	k: 464	n:740000
Cons ci ratio: 4.264668e-03	ci left: 5.319530e-01	ci right 5.342278e-01	k: 394487	n:740000
KS ci ratio: 2.435342e-01	ci left: 3.074060e-04	ci right 3.938814e-04	k: 258	n:740000
LRRC37A2   740000 perm   380 sec   (1950 perm/sec)   p_kst 3.486486e-04   p_cons 5.330905e-01   p_joint 6.270270e-04

Joint ci ratio: 1.805672e-01	ci left: 5.713007e-04	ci right 6.859467e-04	k: 470	n:750000
Cons ci ratio: 4.236640e-03	ci left: 5.319021e-01	ci right 5.341617e-01	k: 399774	n:750000
KS ci ratio: 2.425995e-01	ci left: 3.058115e-04	ci right 3.914585e-04	k: 260	n:750000
LRRC37A2   750000 perm   387 sec   (1936 perm/sec)   p_kst 3.466667e-04   p_cons 5.330320e-01   p_joint 6.266667e-04

Joint ci ratio: 1.794280e-01	ci left: 5.713226e-04	ci right 6.851711e-04	k: 476	n:760000
Cons ci ratio: 4.207978e-03	ci left: 5.319920e-01	ci right 5.342367e-01	k: 405167	n:760000
KS ci ratio: 2.416756e-01	ci left: 3.042595e-04	ci right 3.890987e-04	k: 262	n:760000
LRRC37A2   760000 perm   395 sec   (1922 perm/sec)   p_kst 3.447368e-04   p_cons 5.331145e-01   p_joint 6.263158e-04

Joint ci ratio: 1.783101e-01	ci left: 5.713462e-04	ci right 6.844135e-04	k: 482	n:770000
Cons ci ratio: 4.180620e-03	ci left: 5.319927e-01	ci right 5.342227e-01	k: 410493	n:770000
KS ci ratio: 2.398584e-01	ci left: 3.051896e-04	ci right 3.895530e-04	k: 266	n:770000
LRRC37A2   770000 perm   404 sec   (1908 perm/sec)   p_kst 3.454545e-04   p_cons 5.331078e-01   p_joint 6.259740e-04

Joint ci ratio: 1.773944e-01	ci left: 5.701461e-04	ci right 6.823344e-04	k: 487	n:780000
Cons ci ratio: 4.153918e-03	ci left: 5.319780e-01	ci right 5.341936e-01	k: 415807	n:780000
KS ci ratio: 2.394108e-01	ci left: 3.024819e-04	ci right 3.859177e-04	k: 267	n:780000
LRRC37A2   780000 perm   412 sec   (1894 perm/sec)   p_kst 3.423077e-04   p_cons 5.330859e-01   p_joint 6.243590e-04

Joint ci ratio: 1.757806e-01	ci left: 5.738180e-04	ci right 6.855925e-04	k: 496	n:790000
Cons ci ratio: 4.127175e-03	ci left: 5.320295e-01	ci right 5.342310e-01	k: 421173	n:790000
KS ci ratio: 2.367746e-01	ci left: 3.057950e-04	ci right 3.890798e-04	k: 273	n:790000
LRRC37A2   790000 perm   422 sec   (1873 perm/sec)   p_kst 3.455696e-04   p_cons 5.331304e-01   p_joint 6.278481e-04

Joint ci ratio: 1.408332e-01	ci left: 8.993553e-04	ci right 1.036799e-03	k: 773	n:800000
Cons ci ratio: 4.102353e-03	ci left: 5.319085e-01	ci right 5.340963e-01	k: 426402	n:800000
KS ci ratio: 2.346432e-01	ci left: 3.078535e-04	ci right 3.908346e-04	k: 278	n:800000
LRRC37A2   800000 perm   432 sec   (1851 perm/sec)   p_kst 3.475000e-04   p_cons 5.330025e-01   p_joint 9.662500e-04

Joint ci ratio: 1.398429e-01	ci left: 9.013556e-04	ci right 1.038056e-03	k: 784	n:810000
Cons ci ratio: 4.076931e-03	ci left: 5.319177e-01	ci right 5.340919e-01	k: 431734	n:810000
KS ci ratio: 2.317534e-01	ci left: 3.121901e-04	ci right 3.951553e-04	k: 285	n:810000
LRRC37A2   810000 perm   442 sec   (1833 perm/sec)   p_kst 3.518519e-04   p_cons 5.330049e-01   p_joint 9.679012e-04

Joint ci ratio: 1.389606e-01	ci left: 9.021333e-04	ci right 1.038017e-03	k: 794	n:820000
Cons ci ratio: 4.052562e-03	ci left: 5.318548e-01	ci right 5.340157e-01	k: 437007	n:820000
KS ci ratio: 2.289678e-01	ci left: 3.164269e-04	ci right 3.993646e-04	k: 292	n:820000
LRRC37A2   820000 perm   454 sec   (1807 perm/sec)   p_kst 3.560976e-04   p_cons 5.329354e-01   p_joint 9.682927e-04

Joint ci ratio: 1.380947e-01	ci left: 9.028949e-04	ci right 1.037976e-03	k: 804	n:830000
Cons ci ratio: 4.028644e-03	ci left: 5.317910e-01	ci right 5.339389e-01	k: 442278	n:830000
KS ci ratio: 2.274206e-01	ci left: 3.171584e-04	ci right 3.996473e-04	k: 296	n:830000
LRRC37A2   830000 perm   463 sec   (1794 perm/sec)   p_kst 3.566265e-04   p_cons 5.328651e-01   p_joint 9.686747e-04

Joint ci ratio: 1.376683e-01	ci left: 8.978930e-04	ci right 1.031777e-03	k: 809	n:840000
Cons ci ratio: 4.004771e-03	ci left: 5.317752e-01	ci right 5.339103e-01	k: 447588	n:840000
KS ci ratio: 2.262808e-01	ci left: 3.167512e-04	ci right 3.986636e-04	k: 299	n:840000
LRRC37A2   840000 perm   471 sec   (1782 perm/sec)   p_kst 3.559524e-04   p_cons 5.328429e-01   p_joint 9.630952e-04

Joint ci ratio: 1.364934e-01	ci left: 9.032355e-04	ci right 1.036673e-03	k: 823	n:850000
Cons ci ratio: 3.981082e-03	ci left: 5.317892e-01	ci right 5.339117e-01	k: 452923	n:850000
KS ci ratio: 2.244181e-01	ci left: 3.185750e-04	ci right 4.001872e-04	k: 304	n:850000
LRRC37A2   850000 perm   480 sec   (1770 perm/sec)   p_kst 3.576471e-04   p_cons 5.328506e-01   p_joint 9.682353e-04

Joint ci ratio: 1.355100e-01	ci left: 9.062116e-04	ci right 1.039047e-03	k: 835	n:860000
Cons ci ratio: 3.958169e-03	ci left: 5.317576e-01	ci right 5.338677e-01	k: 458219	n:860000
KS ci ratio: 2.229608e-01	ci left: 3.192612e-04	ci right 4.004452e-04	k: 308	n:860000
LRRC37A2   860000 perm   489 sec   (1759 perm/sec)   p_kst 3.581395e-04   p_cons 5.328128e-01   p_joint 9.709302e-04

Joint ci ratio: 1.349465e-01	ci left: 9.035691e-04	ci right 1.035422e-03	k: 842	n:870000
Cons ci ratio: 3.935147e-03	ci left: 5.317900e-01	ci right 5.338879e-01	k: 463570	n:870000
KS ci ratio: 2.215315e-01	ci left: 3.199334e-04	ci right 4.006956e-04	k: 312	n:870000
LRRC37A2   870000 perm   498 sec   (1748 perm/sec)   p_kst 3.586207e-04   p_cons 5.328391e-01   p_joint 9.678161e-04

Joint ci ratio: 1.341531e-01	ci left: 9.042824e-04	ci right 1.035402e-03	k: 852	n:880000
Cons ci ratio: 3.913773e-03	ci left: 5.316626e-01	ci right 5.337486e-01	k: 468781	n:880000
KS ci ratio: 2.204775e-01	ci left: 3.195181e-04	ci right 3.997398e-04	k: 315	n:880000
LRRC37A2   880000 perm   507 sec   (1736 perm/sec)   p_kst 3.579545e-04   p_cons 5.327057e-01   p_joint 9.681818e-04

Joint ci ratio: 1.336840e-01	ci left: 9.006375e-04	ci right 1.030735e-03	k: 858	n:890000
Cons ci ratio: 3.892198e-03	ci left: 5.316077e-01	ci right 5.336820e-01	k: 474054	n:890000
KS ci ratio: 2.197833e-01	ci left: 3.180513e-04	ci right 3.976192e-04	k: 317	n:890000
LRRC37A2   890000 perm   516 sec   (1725 perm/sec)   p_kst 3.561798e-04   p_cons 5.326449e-01   p_joint 9.640449e-04

Joint ci ratio: 1.333743e-01	ci left: 8.949262e-04	ci right 1.023876e-03	k: 862	n:900000
Cons ci ratio: 3.870570e-03	ci left: 5.316063e-01	ci right 5.336690e-01	k: 479374	n:900000
KS ci ratio: 2.177385e-01	ci left: 3.208189e-04	ci right 4.002326e-04	k: 323	n:900000
LRRC37A2   900000 perm   525 sec   (1714 perm/sec)   p_kst 3.588889e-04   p_cons 5.326378e-01   p_joint 9.577778e-04

Joint ci ratio: 1.329133e-01	ci left: 8.914655e-04	ci right 1.019438e-03	k: 868	n:910000
Cons ci ratio: 3.849554e-03	ci left: 5.315720e-01	ci right 5.336234e-01	k: 484664	n:910000
KS ci ratio: 2.164067e-01	ci left: 3.214500e-04	ci right 4.004686e-04	k: 327	n:910000
LRRC37A2   910000 perm   535 sec   (1703 perm/sec)   p_kst 3.593407e-04   p_cons 5.325978e-01   p_joint 9.538462e-04

Joint ci ratio: 1.321551e-01	ci left: 8.922849e-04	ci right 1.019586e-03	k: 878	n:920000
Cons ci ratio: 3.829244e-03	ci left: 5.314907e-01	ci right 5.335308e-01	k: 489910	n:920000
KS ci ratio: 2.147757e-01	ci left: 3.230974e-04	ci right 4.018434e-04	k: 332	n:920000
LRRC37A2   920000 perm   544 sec   (1692 perm/sec)   p_kst 3.608696e-04   p_cons 5.325109e-01   p_joint 9.543478e-04

Joint ci ratio: 1.314837e-01	ci left: 8.920487e-04	ci right 1.018620e-03	k: 887	n:930000
Cons ci ratio: 3.808939e-03	ci left: 5.314520e-01	ci right 5.334812e-01	k: 495194	n:930000
KS ci ratio: 2.138148e-01	ci left: 3.226759e-04	ci right 4.009212e-04	k: 335	n:930000
LRRC37A2   930000 perm   553 sec   (1681 perm/sec)   p_kst 3.602151e-04   p_cons 5.324667e-01   p_joint 9.537634e-04

Joint ci ratio: 1.310420e-01	ci left: 8.887321e-04	ci right 1.014376e-03	k: 893	n:940000
Cons ci ratio: 3.788484e-03	ci left: 5.314758e-01	ci right 5.334942e-01	k: 500536	n:940000
KS ci ratio: 2.128667e-01	ci left: 3.222641e-04	ci right 4.000178e-04	k: 338	n:940000
LRRC37A2   940000 perm   563 sec   (1670 perm/sec)   p_kst 3.595745e-04   p_cons 5.324851e-01   p_joint 9.500000e-04

Joint ci ratio: 1.302431e-01	ci left: 8.905776e-04	ci right 1.015655e-03	k: 904	n:950000
Cons ci ratio: 3.768850e-03	ci left: 5.314339e-01	ci right 5.334416e-01	k: 505816	n:950000
KS ci ratio: 2.116218e-01	ci left: 3.228586e-04	ci right 4.002411e-04	k: 342	n:950000
LRRC37A2   950000 perm   572 sec   (1660 perm/sec)   p_kst 3.600000e-04   p_cons 5.324379e-01   p_joint 9.515789e-04

Joint ci ratio: 1.294586e-01	ci left: 8.923869e-04	ci right 1.016906e-03	k: 915	n:960000
Cons ci ratio: 3.748882e-03	ci left: 5.314773e-01	ci right 5.334745e-01	k: 511177	n:960000
KS ci ratio: 2.103985e-01	ci left: 3.234420e-04	ci right 4.004585e-04	k: 346	n:960000
LRRC37A2   960000 perm   582 sec   (1650 perm/sec)   p_kst 3.604167e-04   p_cons 5.324760e-01   p_joint 9.531250e-04

Joint ci ratio: 1.285494e-01	ci left: 8.961567e-04	ci right 1.020256e-03	k: 928	n:970000
Cons ci ratio: 3.730340e-03	ci left: 5.313714e-01	ci right 5.333583e-01	k: 516394	n:970000
KS ci ratio: 2.091962e-01	ci left: 3.240146e-04	ci right 4.006701e-04	k: 350	n:970000
LRRC37A2   970000 perm   592 sec   (1639 perm/sec)   p_kst 3.608247e-04   p_cons 5.323649e-01   p_joint 9.567010e-04

Joint ci ratio: 1.279312e-01	ci left: 8.959013e-04	ci right 1.019324e-03	k: 937	n:980000
Cons ci ratio: 3.711598e-03	ci left: 5.313309e-01	ci right 5.333077e-01	k: 521673	n:980000
KS ci ratio: 2.080142e-01	ci left: 3.245768e-04	ci right 4.008761e-04	k: 354	n:980000
LRRC37A2   980000 perm   601 sec   (1630 perm/sec)   p_kst 3.612245e-04   p_cons 5.323194e-01   p_joint 9.561224e-04

Joint ci ratio: 1.269868e-01	ci left: 9.005425e-04	ci right 1.023619e-03	k: 951	n:990000
Cons ci ratio: 3.692762e-03	ci left: 5.313418e-01	ci right 5.333085e-01	k: 527002	n:990000
KS ci ratio: 2.062781e-01	ci left: 3.270445e-04	ci right 4.032013e-04	k: 360	n:990000
LRRC37A2   990000 perm   611 sec   (1620 perm/sec)   p_kst 3.636364e-04   p_cons 5.323253e-01   p_joint 9.606061e-04

Joint ci ratio: 1.264566e-01	ci left: 8.992834e-04	ci right 1.021637e-03	k: 959	n:1000000
Cons ci ratio: 3.673958e-03	ci left: 5.313865e-01	ci right 5.333433e-01	k: 532365	n:1000000
KS ci ratio: 2.059932e-01	ci left: 3.247224e-04	ci right 4.002209e-04	k: 361	n:1000000
LRRC37A2   1000000 perm   621 sec   (1610 perm/sec)   p_kst 3.610000e-04   p_cons 5.323650e-01   p_joint 9.590000e-04

Joint ci ratio: 1.260635e-01	ci left: 8.961325e-04	ci right 1.017650e-03	k: 965	n:1010000
Cons ci ratio: 3.656130e-03	ci left: 5.313362e-01	ci right 5.332834e-01	k: 537633	n:1010000
KS ci ratio: 2.045851e-01	ci left: 3.262034e-04	ci right 4.014629e-04	k: 366	n:1010000
LRRC37A2   1010000 perm   631 sec   (1601 perm/sec)   p_kst 3.623762e-04   p_cons 5.323099e-01   p_joint 9.554455e-04

Joint ci ratio: 1.256741e-01	ci left: 8.930439e-04	ci right 1.013740e-03	k: 971	n:1020000
Cons ci ratio: 3.637620e-03	ci left: 5.314154e-01	ci right 5.333530e-01	k: 543032	n:1020000
KS ci ratio: 2.034791e-01	ci left: 3.267266e-04	ci right 4.016487e-04	k: 370	n:1020000
LRRC37A2   1020000 perm   641 sec   (1591 perm/sec)   p_kst 3.627451e-04   p_cons 5.323843e-01   p_joint 9.519608e-04

Joint ci ratio: 1.250963e-01	ci left: 8.928374e-04	ci right 1.012910e-03	k: 980	n:1030000
Cons ci ratio: 3.619896e-03	ci left: 5.314232e-01	ci right 5.333513e-01	k: 548359	n:1030000
KS ci ratio: 2.026615e-01	ci left: 3.263190e-04	ci right 4.008097e-04	k: 373	n:1030000
LRRC37A2   1030000 perm   651 sec   (1582 perm/sec)   p_kst 3.621359e-04   p_cons 5.323874e-01   p_joint 9.514563e-04

Joint ci ratio: 1.244635e-01	ci left: 8.935677e-04	ci right 1.013086e-03	k: 990	n:1040000
Cons ci ratio: 3.602492e-03	ci left: 5.314222e-01	ci right 5.333411e-01	k: 553677	n:1040000
KS ci ratio: 2.015863e-01	ci left: 3.268328e-04	ci right 4.009963e-04	k: 377	n:1040000
LRRC37A2   1040000 perm   662 sec   (1572 perm/sec)   p_kst 3.625000e-04   p_cons 5.323817e-01   p_joint 9.519231e-04

Joint ci ratio: 1.238402e-01	ci left: 8.942856e-04	ci right 1.013257e-03	k: 1000	n:1050000
Cons ci ratio: 3.585020e-03	ci left: 5.314651e-01	ci right 5.333747e-01	k: 559041	n:1050000
KS ci ratio: 2.010553e-01	ci left: 3.255288e-04	ci right 3.991780e-04	k: 379	n:1050000
LRRC37A2   1050000 perm   672 sec   (1563 perm/sec)   p_kst 3.609524e-04   p_cons 5.324200e-01   p_joint 9.523810e-04

Joint ci ratio: 1.232873e-01	ci left: 8.940771e-04	ci right 1.012451e-03	k: 1009	n:1060000
Cons ci ratio: 3.568376e-03	ci left: 5.314270e-01	ci right 5.333276e-01	k: 564320	n:1060000
KS ci ratio: 2.007915e-01	ci left: 3.233537e-04	ci right 3.964030e-04	k: 380	n:1060000
LRRC37A2   1060000 perm   682 sec   (1554 perm/sec)   p_kst 3.584906e-04   p_cons 5.323774e-01   p_joint 9.518868e-04

Joint ci ratio: 1.228020e-01	ci left: 8.929677e-04	ci right 1.010695e-03	k: 1017	n:1070000
Cons ci ratio: 3.552074e-03	ci left: 5.313737e-01	ci right 5.332654e-01	k: 569582	n:1070000
KS ci ratio: 2.000057e-01	ci left: 3.229948e-04	ci right 3.956425e-04	k: 383	n:1070000
LRRC37A2   1070000 perm   693 sec   (1545 perm/sec)   p_kst 3.579439e-04   p_cons 5.323196e-01   p_joint 9.504673e-04

Joint ci ratio: 1.224419e-01	ci left: 8.900845e-04	ci right 1.007063e-03	k: 1023	n:1080000
Cons ci ratio: 3.535375e-03	ci left: 5.314084e-01	ci right 5.332914e-01	k: 574938	n:1080000
KS ci ratio: 1.989720e-01	ci left: 3.235228e-04	ci right 3.958676e-04	k: 387	n:1080000
LRRC37A2   1080000 perm   703 sec   (1535 perm/sec)   p_kst 3.583333e-04   p_cons 5.323500e-01   p_joint 9.472222e-04

Joint ci ratio: 1.216718e-01	ci left: 8.934812e-04	ci right 1.010114e-03	k: 1036	n:1090000
Cons ci ratio: 3.519065e-03	ci left: 5.314206e-01	ci right 5.332949e-01	k: 580270	n:1090000
KS ci ratio: 1.977021e-01	ci left: 3.249141e-04	ci right 3.970504e-04	k: 392	n:1090000
LRRC37A2   1090000 perm   714 sec   (1526 perm/sec)   p_kst 3.596330e-04   p_cons 5.323578e-01   p_joint 9.504587e-04

Joint ci ratio: 1.206861e-01	ci left: 9.003449e-04	ci right 1.016854e-03	k: 1053	n:1100000
Cons ci ratio: 3.503094e-03	ci left: 5.314161e-01	ci right 5.332819e-01	k: 585584	n:1100000
KS ci ratio: 1.967036e-01	ci left: 3.254171e-04	ci right 3.972566e-04	k: 396	n:1100000
LRRC37A2   1100000 perm   725 sec   (1518 perm/sec)   p_kst 3.600000e-04   p_cons 5.323491e-01   p_joint 9.572727e-04

Joint ci ratio: 1.203443e-01	ci left: 8.974761e-04	ci right 1.013262e-03	k: 1059	n:1110000
Cons ci ratio: 3.486790e-03	ci left: 5.314902e-01	ci right 5.333475e-01	k: 590985	n:1110000
KS ci ratio: 1.962101e-01	ci left: 3.241986e-04	ci right 3.955680e-04	k: 398	n:1110000
LRRC37A2   1110000 perm   736 sec   (1509 perm/sec)   p_kst 3.585586e-04   p_cons 5.324189e-01   p_joint 9.540541e-04

Joint ci ratio: 1.198367e-01	ci left: 8.972572e-04	ci right 1.012492e-03	k: 1068	n:1120000
Cons ci ratio: 3.471819e-03	ci left: 5.314040e-01	ci right 5.332530e-01	k: 596208	n:1120000
KS ci ratio: 1.945110e-01	ci left: 3.272483e-04	ci right 3.985914e-04	k: 405	n:1120000
LRRC37A2   1120000 perm   747 sec   (1500 perm/sec)   p_kst 3.616071e-04   p_cons 5.323286e-01   p_joint 9.535714e-04

Joint ci ratio: 1.193908e-01	ci left: 8.961847e-04	ci right 1.010823e-03	k: 1076	n:1130000
Cons ci ratio: 3.456191e-03	ci left: 5.314415e-01	ci right 5.332823e-01	k: 601569	n:1130000
KS ci ratio: 1.940338e-01	ci left: 3.260361e-04	ci right 3.969200e-04	k: 407	n:1130000
LRRC37A2   1130000 perm   758 sec   (1492 perm/sec)   p_kst 3.601770e-04   p_cons 5.323619e-01   p_joint 9.522124e-04

Joint ci ratio: 1.189499e-01	ci left: 8.951317e-04	ci right 1.009183e-03	k: 1084	n:1140000
Cons ci ratio: 3.440627e-03	ci left: 5.314994e-01	ci right 5.333321e-01	k: 606954	n:1140000
KS ci ratio: 1.926224e-01	ci left: 3.281846e-04	ci right 3.989558e-04	k: 413	n:1140000
LRRC37A2   1140000 perm   768 sec   (1484 perm/sec)   p_kst 3.622807e-04   p_cons 5.324158e-01   p_joint 9.508772e-04

Joint ci ratio: 1.179749e-01	ci left: 9.025366e-04	ci right 1.016523e-03	k: 1102	n:1150000
Cons ci ratio: 3.425863e-03	ci left: 5.314702e-01	ci right 5.332949e-01	k: 612240	n:1150000
KS ci ratio: 1.914696e-01	ci left: 3.294697e-04	ci right 4.000432e-04	k: 418	n:1150000
LRRC37A2   1150000 perm   779 sec   (1476 perm/sec)   p_kst 3.634783e-04   p_cons 5.323826e-01   p_joint 9.582609e-04

Joint ci ratio: 1.176555e-01	ci left: 8.997760e-04	ci right 1.013084e-03	k: 1108	n:1160000
Cons ci ratio: 3.411353e-03	ci left: 5.314320e-01	ci right 5.332489e-01	k: 617515	n:1160000
KS ci ratio: 1.910144e-01	ci left: 3.282710e-04	ci right 3.984011e-04	k: 420	n:1160000
LRRC37A2   1160000 perm   790 sec   (1468 perm/sec)   p_kst 3.620690e-04   p_cons 5.323405e-01   p_joint 9.551724e-04

Joint ci ratio: 1.170763e-01	ci left: 9.012113e-04	ci right 1.014103e-03	k: 1119	n:1170000
Cons ci ratio: 3.397125e-03	ci left: 5.313800e-01	ci right 5.331891e-01	k: 622773	n:1170000
KS ci ratio: 1.901133e-01	ci left: 3.287210e-04	ci right 3.985777e-04	k: 424	n:1170000
LRRC37A2   1170000 perm   801 sec   (1460 perm/sec)   p_kst 3.623932e-04   p_cons 5.322846e-01   p_joint 9.564103e-04

Joint ci ratio: 1.161974e-01	ci left: 9.075606e-04	ci right 1.020336e-03	k: 1136	n:1180000
Cons ci ratio: 3.382946e-03	ci left: 5.313475e-01	ci right 5.331489e-01	k: 628053	n:1180000
KS ci ratio: 1.887852e-01	ci left: 3.307788e-04	ci right 4.005255e-04	k: 430	n:1180000
LRRC37A2   1180000 perm   812 sec   (1452 perm/sec)   p_kst 3.644068e-04   p_cons 5.322483e-01   p_joint 9.627119e-04

Joint ci ratio: 1.158415e-01	ci left: 9.056456e-04	ci right 1.017815e-03	k: 1143	n:1190000
Cons ci ratio: 3.368762e-03	ci left: 5.313425e-01	ci right 5.331363e-01	k: 633365	n:1190000
KS ci ratio: 1.885668e-01	ci left: 3.287998e-04	ci right 3.980398e-04	k: 431	n:1190000
LRRC37A2   1190000 perm   824 sec   (1444 perm/sec)   p_kst 3.621849e-04   p_cons 5.322395e-01   p_joint 9.605042e-04

Joint ci ratio: 1.152385e-01	ci left: 9.078096e-04	ci right 1.019622e-03	k: 1155	n:1200000
Cons ci ratio: 3.354760e-03	ci left: 5.313368e-01	ci right 5.331231e-01	k: 638676	n:1200000
KS ci ratio: 1.870571e-01	ci left: 3.316189e-04	ci right 4.008300e-04	k: 438	n:1200000
LRRC37A2   1200000 perm   835 sec   (1437 perm/sec)   p_kst 3.650000e-04   p_cons 5.322300e-01   p_joint 9.625000e-04

Joint ci ratio: 1.148913e-01	ci left: 9.059256e-04	ci right 1.017147e-03	k: 1162	n:1210000
Cons ci ratio: 3.340776e-03	ci left: 5.313543e-01	ci right 5.331332e-01	k: 644015	n:1210000
KS ci ratio: 1.866326e-01	ci left: 3.304538e-04	ci right 3.992475e-04	k: 440	n:1210000
LRRC37A2   1210000 perm   847 sec   (1429 perm/sec)   p_kst 3.636364e-04   p_cons 5.322438e-01   p_joint 9.603306e-04

Joint ci ratio: 1.142544e-01	ci left: 9.088505e-04	ci right 1.019770e-03	k: 1175	n:1220000
Cons ci ratio: 3.326752e-03	ci left: 5.314035e-01	ci right 5.331751e-01	k: 649393	n:1220000
KS ci ratio: 1.851685e-01	ci left: 3.332159e-04	ci right 4.019793e-04	k: 447	n:1220000
LRRC37A2   1220000 perm   858 sec   (1421 perm/sec)   p_kst 3.663934e-04   p_cons 5.322893e-01   p_joint 9.631148e-04

Joint ci ratio: 1.136758e-01	ci left: 9.109395e-04	ci right 1.021513e-03	k: 1187	n:1230000
Cons ci ratio: 3.312665e-03	ci left: 5.314877e-01	ci right 5.332520e-01	k: 654815	n:1230000
KS ci ratio: 1.839407e-01	ci left: 3.351596e-04	ci right 4.038143e-04	k: 453	n:1230000
LRRC37A2   1230000 perm   870 sec   (1414 perm/sec)   p_kst 3.682927e-04   p_cons 5.323699e-01   p_joint 9.650407e-04

Joint ci ratio: 1.132950e-01	ci left: 9.098617e-04	ci right 1.019910e-03	k: 1195	n:1240000
Cons ci ratio: 3.298739e-03	ci left: 5.315729e-01	ci right 5.333301e-01	k: 660240	n:1240000
KS ci ratio: 1.835370e-01	ci left: 3.339954e-04	ci right 4.022448e-04	k: 455	n:1240000
LRRC37A2   1240000 perm   882 sec   (1407 perm/sec)   p_kst 3.669355e-04   p_cons 5.324516e-01   p_joint 9.637097e-04

Joint ci ratio: 1.128711e-01	ci left: 9.095791e-04	ci right 1.019154e-03	k: 1204	n:1250000
Cons ci ratio: 3.285510e-03	ci left: 5.315777e-01	ci right 5.333278e-01	k: 665566	n:1250000
KS ci ratio: 1.829363e-01	ci left: 3.336133e-04	ci right 4.015368e-04	k: 458	n:1250000
LRRC37A2   1250000 perm   893 sec   (1400 perm/sec)   p_kst 3.664000e-04   p_cons 5.324528e-01   p_joint 9.632000e-04

Joint ci ratio: 1.124520e-01	ci left: 9.093018e-04	ci right 1.018410e-03	k: 1213	n:1260000
Cons ci ratio: 3.272355e-03	ci left: 5.315950e-01	ci right 5.333382e-01	k: 670908	n:1260000
KS ci ratio: 1.823414e-01	ci left: 3.332377e-04	ci right 4.008397e-04	k: 461	n:1260000
LRRC37A2   1260000 perm   905 sec   (1392 perm/sec)   p_kst 3.658730e-04   p_cons 5.324667e-01   p_joint 9.626984e-04

Joint ci ratio: 1.120375e-01	ci left: 9.090296e-04	ci right 1.017676e-03	k: 1222	n:1270000
Cons ci ratio: 3.259202e-03	ci left: 5.316357e-01	ci right 5.333720e-01	k: 676280	n:1270000
KS ci ratio: 1.819481e-01	ci left: 3.321168e-04	ci right 3.993300e-04	k: 463	n:1270000
LRRC37A2   1270000 perm   917 sec   (1385 perm/sec)   p_kst 3.645669e-04   p_cons 5.325039e-01   p_joint 9.622047e-04

Joint ci ratio: 1.116276e-01	ci left: 9.087624e-04	ci right 1.016954e-03	k: 1231	n:1280000
Cons ci ratio: 3.246782e-03	ci left: 5.315875e-01	ci right 5.333170e-01	k: 681539	n:1280000
KS ci ratio: 1.815574e-01	ci left: 3.310135e-04	ci right 3.978438e-04	k: 465	n:1280000
LRRC37A2   1280000 perm   929 sec   (1378 perm/sec)   p_kst 3.632812e-04   p_cons 5.324523e-01   p_joint 9.617188e-04

Joint ci ratio: 1.111773e-01	ci left: 9.092537e-04	ci right 1.017038e-03	k: 1241	n:1290000
Cons ci ratio: 3.233804e-03	ci left: 5.316478e-01	ci right 5.333706e-01	k: 686937	n:1290000
KS ci ratio: 1.807831e-01	ci left: 3.314077e-04	ci right 3.980010e-04	k: 469	n:1290000
LRRC37A2   1290000 perm   941 sec   (1371 perm/sec)   p_kst 3.635659e-04   p_cons 5.325093e-01   p_joint 9.620155e-04

Joint ci ratio: 1.108210e-01	ci left: 9.082424e-04	ci right 1.015539e-03	k: 1249	n:1300000
Cons ci ratio: 3.221676e-03	ci left: 5.315995e-01	ci right 5.333157e-01	k: 692195	n:1300000
KS ci ratio: 1.800187e-01	ci left: 3.317964e-04	ci right 3.981551e-04	k: 473	n:1300000
LRRC37A2   1300000 perm   953 sec   (1364 perm/sec)   p_kst 3.638462e-04   p_cons 5.324577e-01   p_joint 9.607692e-04

Joint ci ratio: 1.100312e-01	ci left: 9.146703e-04	ci right 1.021907e-03	k: 1267	n:1310000
Cons ci ratio: 3.209964e-03	ci left: 5.315085e-01	ci right 5.332181e-01	k: 697396	n:1310000
KS ci ratio: 1.796402e-01	ci left: 3.307215e-04	ci right 3.967112e-04	k: 475	n:1310000
LRRC37A2   1310000 perm   966 sec   (1356 perm/sec)   p_kst 3.625954e-04   p_cons 5.323634e-01   p_joint 9.671756e-04

Joint ci ratio: 1.095570e-01	ci left: 9.158455e-04	ci right 1.022727e-03	k: 1278	n:1320000
Cons ci ratio: 3.197751e-03	ci left: 5.315166e-01	ci right 5.332197e-01	k: 702726	n:1320000
KS ci ratio: 1.781491e-01	ci left: 3.340053e-04	ci right 4.000374e-04	k: 483	n:1320000
LRRC37A2   1320000 perm   978 sec   (1349 perm/sec)   p_kst 3.659091e-04   p_cons 5.323682e-01   p_joint 9.681818e-04

Joint ci ratio: 1.088778e-01	ci left: 9.206611e-04	ci right 1.027396e-03	k: 1294	n:1330000
Cons ci ratio: 3.185503e-03	ci left: 5.315516e-01	ci right 5.332483e-01	k: 708092	n:1330000
KS ci ratio: 1.772359e-01	ci left: 3.350862e-04	ci right 4.009560e-04	k: 488	n:1330000
LRRC37A2   1330000 perm   991 sec   (1342 perm/sec)   p_kst 3.669173e-04   p_cons 5.324000e-01   p_joint 9.729323e-04

Joint ci ratio: 1.084183e-01	ci left: 9.217764e-04	ci right 1.028161e-03	k: 1305	n:1340000
Cons ci ratio: 3.173328e-03	ci left: 5.315966e-01	ci right 5.332869e-01	k: 713472	n:1340000
KS ci ratio: 1.766947e-01	ci left: 3.347252e-04	ci right 4.003017e-04	k: 491	n:1340000
LRRC37A2   1340000 perm   1003 sec   (1335 perm/sec)   p_kst 3.664179e-04   p_cons 5.324418e-01   p_joint 9.738806e-04

Joint ci ratio: 1.080056e-01	ci left: 9.221553e-04	ci right 1.028152e-03	k: 1315	n:1350000
Cons ci ratio: 3.161344e-03	ci left: 5.316327e-01	ci right 5.333168e-01	k: 718841	n:1350000
KS ci ratio: 1.758036e-01	ci left: 3.357861e-04	ci right 4.012034e-04	k: 496	n:1350000
LRRC37A2   1350000 perm   1016 sec   (1329 perm/sec)   p_kst 3.674074e-04   p_cons 5.324748e-01   p_joint 9.740741e-04

Joint ci ratio: 1.078012e-01	ci left: 9.189519e-04	ci right 1.024368e-03	k: 1320	n:1360000
Cons ci ratio: 3.149685e-03	ci left: 5.316382e-01	ci right 5.333161e-01	k: 724169	n:1360000
KS ci ratio: 1.752754e-01	ci left: 3.354261e-04	ci right 4.005561e-04	k: 499	n:1360000
LRRC37A2   1360000 perm   1029 sec   (1322 perm/sec)   p_kst 3.669118e-04   p_cons 5.324772e-01   p_joint 9.705882e-04

Joint ci ratio: 1.074358e-01	ci left: 9.186368e-04	ci right 1.023637e-03	k: 1329	n:1370000
Cons ci ratio: 3.138043e-03	ci left: 5.316612e-01	ci right 5.333329e-01	k: 729521	n:1370000
KS ci ratio: 1.740610e-01	ci left: 3.378639e-04	ci right 4.029649e-04	k: 506	n:1370000
LRRC37A2   1370000 perm   1042 sec   (1315 perm/sec)   p_kst 3.693431e-04   p_cons 5.324971e-01   p_joint 9.700730e-04

Joint ci ratio: 1.069942e-01	ci left: 9.197373e-04	ci right 1.024404e-03	k: 1340	n:1380000
Cons ci ratio: 3.126794e-03	ci left: 5.316418e-01	ci right 5.333074e-01	k: 734815	n:1380000
KS ci ratio: 1.732090e-01	ci left: 3.388813e-04	ci right 4.038254e-04	k: 511	n:1380000
LRRC37A2   1380000 perm   1055 sec   (1308 perm/sec)   p_kst 3.702899e-04   p_cons 5.324746e-01   p_joint 9.710145e-04

Joint ci ratio: 1.066370e-01	ci left: 9.194223e-04	ci right 1.023682e-03	k: 1349	n:1390000
Cons ci ratio: 3.114980e-03	ci left: 5.317320e-01	ci right 5.333916e-01	k: 740261	n:1390000
KS ci ratio: 1.728718e-01	ci left: 3.378198e-04	ci right 4.024213e-04	k: 513	n:1390000
LRRC37A2   1390000 perm   1068 sec   (1301 perm/sec)   p_kst 3.690647e-04   p_cons 5.325619e-01   p_joint 9.705036e-04

Joint ci ratio: 1.063225e-01	ci left: 9.184171e-04	ci right 1.022237e-03	k: 1357	n:1400000
Cons ci ratio: 3.103923e-03	ci left: 5.317210e-01	ci right 5.333746e-01	k: 745567	n:1400000
KS ci ratio: 1.727040e-01	ci left: 3.360902e-04	ci right 4.002920e-04	k: 514	n:1400000
LRRC37A2   1400000 perm   1081 sec   (1295 perm/sec)   p_kst 3.671429e-04   p_cons 5.325479e-01   p_joint 9.692857e-04

Joint ci ratio: 1.059720e-01	ci left: 9.181170e-04	ci right 1.021539e-03	k: 1366	n:1410000
Cons ci ratio: 3.092951e-03	ci left: 5.317150e-01	ci right 5.333628e-01	k: 750880	n:1410000
KS ci ratio: 1.712141e-01	ci left: 3.398149e-04	ci right 4.041104e-04	k: 523	n:1410000
LRRC37A2   1410000 perm   1095 sec   (1288 perm/sec)   p_kst 3.709220e-04   p_cons 5.325390e-01   p_joint 9.687943e-04

Joint ci ratio: 1.056249e-01	ci left: 9.178217e-04	ci right 1.020851e-03	k: 1375	n:1420000
Cons ci ratio: 3.081956e-03	ci left: 5.317318e-01	ci right 5.333737e-01	k: 756225	n:1420000
KS ci ratio: 1.705643e-01	ci left: 3.401183e-04	ci right 4.042018e-04	k: 527	n:1420000
LRRC37A2   1420000 perm   1108 sec   (1282 perm/sec)   p_kst 3.711268e-04   p_cons 5.325528e-01   p_joint 9.683099e-04

Joint ci ratio: 1.052051e-01	ci left: 9.188929e-04	ci right 1.021607e-03	k: 1386	n:1430000
Cons ci ratio: 3.070840e-03	ci left: 5.317867e-01	ci right 5.334229e-01	k: 761625	n:1430000
KS ci ratio: 1.702423e-01	ci left: 3.390788e-04	ci right 4.028335e-04	k: 529	n:1430000
LRRC37A2   1430000 perm   1121 sec   (1276 perm/sec)   p_kst 3.699301e-04   p_cons 5.326049e-01   p_joint 9.692308e-04

Joint ci ratio: 1.048655e-01	ci left: 9.185975e-04	ci right 1.020927e-03	k: 1395	n:1440000
Cons ci ratio: 3.059894e-03	ci left: 5.318326e-01	ci right 5.334631e-01	k: 767013	n:1440000
KS ci ratio: 1.689716e-01	ci left: 3.420438e-04	ci right 4.058271e-04	k: 537	n:1440000
LRRC37A2   1440000 perm   1134 sec   (1270 perm/sec)   p_kst 3.729167e-04   p_cons 5.326479e-01   p_joint 9.687500e-04

Joint ci ratio: 1.043805e-01	ci left: 9.209933e-04	ci right 1.023086e-03	k: 1408	n:1450000
Cons ci ratio: 3.049360e-03	ci left: 5.318296e-01	ci right 5.334544e-01	k: 772331	n:1450000
KS ci ratio: 1.680370e-01	ci left: 3.436484e-04	ci right 4.073405e-04	k: 543	n:1450000
LRRC37A2   1450000 perm   1147 sec   (1264 perm/sec)   p_kst 3.744828e-04   p_cons 5.326421e-01   p_joint 9.710345e-04

Joint ci ratio: 1.041959e-01	ci left: 9.180204e-04	ci right 1.019592e-03	k: 1413	n:1460000
Cons ci ratio: 3.038713e-03	ci left: 5.318629e-01	ci right 5.334822e-01	k: 777702	n:1460000
KS ci ratio: 1.677291e-01	ci left: 3.426069e-04	ci right 4.059779e-04	k: 545	n:1460000
LRRC37A2   1460000 perm   1161 sec   (1258 perm/sec)   p_kst 3.732877e-04   p_cons 5.326726e-01   p_joint 9.678082e-04

Joint ci ratio: 1.036838e-01	ci left: 9.210517e-04	ci right 1.022428e-03	k: 1427	n:1470000
Cons ci ratio: 3.028061e-03	ci left: 5.319148e-01	ci right 5.335286e-01	k: 783101	n:1470000
KS ci ratio: 1.669663e-01	ci left: 3.435352e-04	ci right 4.067598e-04	k: 550	n:1470000
LRRC37A2   1470000 perm   1175 sec   (1251 perm/sec)   p_kst 3.741497e-04   p_cons 5.327218e-01   p_joint 9.707483e-04

Joint ci ratio: 1.034307e-01	ci left: 9.194355e-04	ci right 1.020372e-03	k: 1434	n:1480000
Cons ci ratio: 3.018175e-03	ci left: 5.318579e-01	ci right 5.334663e-01	k: 788340	n:1480000
KS ci ratio: 1.668151e-01	ci left: 3.418614e-04	ci right 4.047154e-04	k: 551	n:1480000
LRRC37A2   1480000 perm   1189 sec   (1245 perm/sec)   p_kst 3.722973e-04   p_cons 5.326622e-01   p_joint 9.689189e-04

Joint ci ratio: 1.031794e-01	ci left: 9.178414e-04	ci right 1.018343e-03	k: 1441	n:1490000
Cons ci ratio: 3.008068e-03	ci left: 5.318542e-01	ci right 5.334571e-01	k: 793657	n:1490000
KS ci ratio: 1.665138e-01	ci left: 3.408533e-04	ci right 4.033974e-04	k: 553	n:1490000
LRRC37A2   1490000 perm   1202 sec   (1239 perm/sec)   p_kst 3.711409e-04   p_cons 5.326557e-01   p_joint 9.671141e-04

Joint ci ratio: 1.027173e-01	ci left: 9.201660e-04	ci right 1.020443e-03	k: 1454	n:1500000
Cons ci ratio: 2.998027e-03	ci left: 5.318565e-01	ci right 5.334540e-01	k: 798983	n:1500000
KS ci ratio: 1.657674e-01	ci left: 3.417757e-04	ci right 4.041799e-04	k: 558	n:1500000
LRRC37A2   1500000 perm   1216 sec   (1233 perm/sec)   p_kst 3.720000e-04   p_cons 5.326553e-01   p_joint 9.693333e-04

Joint ci ratio: 1.024011e-01	ci left: 9.198796e-04	ci right 1.019799e-03	k: 1463	n:1510000
Cons ci ratio: 2.988344e-03	ci left: 5.318157e-01	ci right 5.334080e-01	k: 804244	n:1510000
KS ci ratio: 1.648847e-01	ci left: 3.433214e-04	ci right 4.056409e-04	k: 564	n:1510000
LRRC37A2   1510000 perm   1230 sec   (1227 perm/sec)   p_kst 3.735099e-04   p_cons 5.326119e-01   p_joint 9.688742e-04

Joint ci ratio: 1.021225e-01	ci left: 9.189563e-04	ci right 1.018487e-03	k: 1471	n:1520000
Cons ci ratio: 2.978419e-03	ci left: 5.318314e-01	ci right 5.334184e-01	k: 809590	n:1520000
KS ci ratio: 1.644488e-01	ci left: 3.429551e-04	ci right 4.050272e-04	k: 567	n:1520000
LRRC37A2   1520000 perm   1245 sec   (1221 perm/sec)   p_kst 3.730263e-04   p_cons 5.326250e-01   p_joint 9.677632e-04

Joint ci ratio: 1.017087e-01	ci left: 9.205933e-04	ci right 1.019873e-03	k: 1483	n:1530000
Cons ci ratio: 2.968332e-03	ci left: 5.318907e-01	ci right 5.334725e-01	k: 815003	n:1530000
KS ci ratio: 1.640162e-01	ci left: 3.425937e-04	ci right 4.044212e-04	k: 570	n:1530000
LRRC37A2   1530000 perm   1259 sec   (1215 perm/sec)   p_kst 3.725490e-04   p_cons 5.326817e-01   p_joint 9.692810e-04

Joint ci ratio: 1.014698e-01	ci left: 9.190453e-04	ci right 1.017912e-03	k: 1490	n:1540000
Cons ci ratio: 2.958740e-03	ci left: 5.318830e-01	ci right 5.334597e-01	k: 820314	n:1540000
KS ci ratio: 1.634447e-01	ci left: 3.428601e-04	ci right 4.044989e-04	k: 574	n:1540000
LRRC37A2   1540000 perm   1274 sec   (1209 perm/sec)   p_kst 3.727273e-04   p_cons 5.326714e-01   p_joint 9.675325e-04

Joint ci ratio: 1.012325e-01	ci left: 9.175176e-04	ci right 1.015975e-03	k: 1497	n:1550000
Cons ci ratio: 2.949305e-03	ci left: 5.318645e-01	ci right 5.334360e-01	k: 825608	n:1550000
KS ci ratio: 1.630200e-01	ci left: 3.425045e-04	ci right 4.039037e-04	k: 577	n:1550000
LRRC37A2   1550000 perm   1289 sec   (1203 perm/sec)   p_kst 3.722581e-04   p_cons 5.326503e-01   p_joint 9.658065e-04

Joint ci ratio: 1.010305e-01	ci left: 9.153849e-04	ci right 1.013406e-03	k: 1503	n:1560000
Cons ci ratio: 2.939801e-03	ci left: 5.318731e-01	ci right 5.334396e-01	k: 830944	n:1560000
KS ci ratio: 1.625987e-01	ci left: 3.421537e-04	ci right 4.033159e-04	k: 580	n:1560000
LRRC37A2   1560000 perm   1304 sec   (1196 perm/sec)   p_kst 3.717949e-04   p_cons 5.326564e-01   p_joint 9.634615e-04

Joint ci ratio: 1.005966e-01	ci left: 9.176260e-04	ci right 1.015440e-03	k: 1516	n:1570000
Cons ci ratio: 2.930197e-03	ci left: 5.319141e-01	ci right 5.334756e-01	k: 836331	n:1570000
KS ci ratio: 1.617654e-01	ci left: 3.436409e-04	ci right 4.047236e-04	k: 586	n:1570000
LRRC37A2   1570000 perm   1318 sec   (1191 perm/sec)   p_kst 3.732484e-04   p_cons 5.326949e-01   p_joint 9.656051e-04

Joint ci ratio: 1.002995e-01	ci left: 9.173713e-04	ci right 1.014853e-03	k: 1525	n:1580000
Cons ci ratio: 2.921129e-03	ci left: 5.318793e-01	ci right 5.334358e-01	k: 841599	n:1580000
KS ci ratio: 1.613537e-01	ci left: 3.432879e-04	ci right 4.041375e-04	k: 589	n:1580000
LRRC37A2   1580000 perm   1333 sec   (1185 perm/sec)   p_kst 3.727848e-04   p_cons 5.326576e-01   p_joint 9.651899e-04

Joint ci ratio: 9.997248e-02	ci left: 9.177335e-04	ci right 1.014917e-03	k: 1535	n:1590000
Cons ci ratio: 2.912063e-03	ci left: 5.318587e-01	ci right 5.334104e-01	k: 846889	n:1590000
KS ci ratio: 1.609450e-01	ci left: 3.429396e-04	ci right 4.035586e-04	k: 592	n:1590000
LRRC37A2   1590000 perm   1348 sec   (1180 perm/sec)   p_kst 3.723270e-04   p_cons 5.326346e-01   p_joint 9.654088e-04

Joint ci ratio: 9.981030e-02	ci left: 9.150445e-04	ci right 1.011776e-03	k: 1540	n:1600000
Cons ci ratio: 2.902917e-03	ci left: 5.318665e-01	ci right 5.334133e-01	k: 852224	n:1600000
KS ci ratio: 1.605395e-01	ci left: 3.425958e-04	ci right 4.029867e-04	k: 595	n:1600000
LRRC37A2   1600000 perm   1365 sec   (1172 perm/sec)   p_kst 3.718750e-04   p_cons 5.326400e-01   p_joint 9.625000e-04

Joint ci ratio: 9.958446e-02	ci left: 9.136004e-04	ci right 1.009948e-03	k: 1547	n:1610000
Cons ci ratio: 2.893726e-03	ci left: 5.318966e-01	ci right 5.334386e-01	k: 857595	n:1610000
KS ci ratio: 1.601370e-01	ci left: 3.422565e-04	ci right 4.024218e-04	k: 598	n:1610000
LRRC37A2   1610000 perm   1380 sec   (1166 perm/sec)   p_kst 3.714286e-04   p_cons 5.326677e-01   p_joint 9.608696e-04

Joint ci ratio: 9.929624e-02	ci left: 9.133783e-04	ci right 1.009408e-03	k: 1556	n:1620000
Cons ci ratio: 2.884877e-03	ci left: 5.318826e-01	ci right 5.334198e-01	k: 862895	n:1620000
KS ci ratio: 1.593409e-01	ci left: 3.436994e-04	ci right 4.037893e-04	k: 604	n:1620000
LRRC37A2   1620000 perm   1396 sec   (1161 perm/sec)   p_kst 3.728395e-04   p_cons 5.326512e-01   p_joint 9.604938e-04

Joint ci ratio: 9.907386e-02	ci left: 9.119627e-04	ci right 1.007616e-03	k: 1563	n:1630000
Cons ci ratio: 2.876080e-03	ci left: 5.318736e-01	ci right 5.334061e-01	k: 868203	n:1630000
KS ci ratio: 1.589473e-01	ci left: 3.433580e-04	ci right 4.032258e-04	k: 607	n:1630000
LRRC37A2   1630000 perm   1411 sec   (1155 perm/sec)   p_kst 3.723926e-04   p_cons 5.326399e-01   p_joint 9.588957e-04

Joint ci ratio: 9.888448e-02	ci left: 9.099698e-04	ci right 1.005221e-03	k: 1569	n:1640000
Cons ci ratio: 2.867015e-03	ci left: 5.319251e-01	ci right 5.334529e-01	k: 873610	n:1640000
KS ci ratio: 1.584270e-01	ci left: 3.436066e-04	ci right 4.033029e-04	k: 611	n:1640000
LRRC37A2   1640000 perm   1426 sec   (1150 perm/sec)   p_kst 3.725610e-04   p_cons 5.326890e-01   p_joint 9.567073e-04

Joint ci ratio: 9.863355e-02	ci left: 9.091836e-04	ci right 1.004097e-03	k: 1577	n:1650000
Cons ci ratio: 2.858344e-03	ci left: 5.319220e-01	ci right 5.334452e-01	k: 878928	n:1650000
KS ci ratio: 1.576559e-01	ci left: 3.450167e-04	ci right 4.046387e-04	k: 617	n:1650000
LRRC37A2   1650000 perm   1442 sec   (1144 perm/sec)   p_kst 3.739394e-04   p_cons 5.326836e-01   p_joint 9.557576e-04

Joint ci ratio: 9.829151e-02	ci left: 9.101699e-04	ci right 1.004838e-03	k: 1588	n:1660000
Cons ci ratio: 2.849539e-03	ci left: 5.319563e-01	ci right 5.334749e-01	k: 884308	n:1660000
KS ci ratio: 1.576561e-01	ci left: 3.429382e-04	ci right 4.022011e-04	k: 617	n:1660000
LRRC37A2   1660000 perm   1460 sec   (1137 perm/sec)   p_kst 3.716867e-04   p_cons 5.327157e-01   p_joint 9.566265e-04

Joint ci ratio: 9.783068e-02	ci left: 9.134816e-04	ci right 1.008023e-03	k: 1603	n:1670000
Cons ci ratio: 2.841152e-03	ci left: 5.319310e-01	ci right 5.334450e-01	k: 889589	n:1670000
KS ci ratio: 1.572749e-01	ci left: 3.426103e-04	ci right 4.016599e-04	k: 620	n:1670000
LRRC37A2   1670000 perm   1476 sec   (1131 perm/sec)   p_kst 3.712575e-04   p_cons 5.326880e-01   p_joint 9.598802e-04

Joint ci ratio: 9.734619e-02	ci left: 9.173357e-04	ci right 1.011779e-03	k: 1619	n:1680000
Cons ci ratio: 2.832571e-03	ci left: 5.319529e-01	ci right 5.334624e-01	k: 894949	n:1680000
KS ci ratio: 1.565205e-01	ci left: 3.440022e-04	ci right 4.029806e-04	k: 626	n:1680000
LRRC37A2   1680000 perm   1494 sec   (1124 perm/sec)   p_kst 3.726190e-04   p_cons 5.327077e-01   p_joint 9.636905e-04

Joint ci ratio: 9.695784e-02	ci left: 9.194131e-04	ci right 1.013671e-03	k: 1632	n:1690000
Cons ci ratio: 2.824256e-03	ci left: 5.319415e-01	ci right 5.334465e-01	k: 900253	n:1690000
KS ci ratio: 1.560236e-01	ci left: 3.442410e-04	ci right 4.030554e-04	k: 630	n:1690000
LRRC37A2   1690000 perm   1510 sec   (1119 perm/sec)   p_kst 3.727811e-04   p_cons 5.326941e-01   p_joint 9.656805e-04

Joint ci ratio: 9.663288e-02	ci left: 9.203188e-04	ci right 1.014336e-03	k: 1643	n:1700000
Cons ci ratio: 2.816004e-03	ci left: 5.319320e-01	ci right 5.334326e-01	k: 905560	n:1700000
KS ci ratio: 1.556540e-01	ci left: 3.439120e-04	ci right 4.025180e-04	k: 633	n:1700000
LRRC37A2   1700000 perm   1526 sec   (1114 perm/sec)   p_kst 3.723529e-04   p_cons 5.326824e-01   p_joint 9.664706e-04

Joint ci ratio: 9.619488e-02	ci left: 9.234973e-04	ci right 1.017387e-03	k: 1658	n:1710000
Cons ci ratio: 2.807632e-03	ci left: 5.319565e-01	ci right 5.334527e-01	k: 910925	n:1710000
KS ci ratio: 1.551653e-01	ci left: 3.441490e-04	ci right 4.025941e-04	k: 637	n:1710000
LRRC37A2   1710000 perm   1545 sec   (1107 perm/sec)   p_kst 3.725146e-04   p_cons 5.327047e-01   p_joint 9.695906e-04

Joint ci ratio: 9.610821e-02	ci left: 9.198303e-04	ci right 1.013258e-03	k: 1661	n:1720000
Cons ci ratio: 2.799710e-03	ci left: 5.319139e-01	ci right 5.334058e-01	k: 916175	n:1720000
KS ci ratio: 1.549227e-01	ci left: 3.432658e-04	ci right 4.014613e-04	k: 639	n:1720000
LRRC37A2   1720000 perm   1563 sec   (1100 perm/sec)   p_kst 3.715116e-04   p_cons 5.326599e-01   p_joint 9.656977e-04

Joint ci ratio: 9.584906e-02	ci left: 9.195908e-04	ci right 1.012729e-03	k: 1670	n:1730000
Cons ci ratio: 2.791638e-03	ci left: 5.319105e-01	ci right 5.333980e-01	k: 921492	n:1730000
KS ci ratio: 1.543210e-01	ci left: 3.440600e-04	ci right 4.021427e-04	k: 644	n:1730000
LRRC37A2   1730000 perm   1579 sec   (1096 perm/sec)   p_kst 3.722543e-04   p_cons 5.326543e-01   p_joint 9.653179e-04

Joint ci ratio: 9.573470e-02	ci left: 9.165495e-04	ci right 1.009262e-03	k: 1674	n:1740000
Cons ci ratio: 2.783484e-03	ci left: 5.319342e-01	ci right 5.334174e-01	k: 926856	n:1740000
KS ci ratio: 1.537263e-01	ci left: 3.448454e-04	ci right 4.028157e-04	k: 649	n:1740000
LRRC37A2   1740000 perm   1598 sec   (1089 perm/sec)   p_kst 3.729885e-04   p_cons 5.326759e-01   p_joint 9.620690e-04

Joint ci ratio: 9.528054e-02	ci left: 9.202366e-04	ci right 1.012856e-03	k: 1690	n:1750000
Cons ci ratio: 2.775506e-03	ci left: 5.319387e-01	ci right 5.334177e-01	k: 932187	n:1750000
KS ci ratio: 1.534904e-01	ci left: 3.439738e-04	ci right 4.017007e-04	k: 651	n:1750000
LRRC37A2   1750000 perm   1616 sec   (1083 perm/sec)   p_kst 3.720000e-04   p_cons 5.326783e-01   p_joint 9.657143e-04

Joint ci ratio: 9.472175e-02	ci left: 9.261018e-04	ci right 1.018735e-03	k: 1710	n:1760000
Cons ci ratio: 2.767641e-03	ci left: 5.319353e-01	ci right 5.334101e-01	k: 937504	n:1760000
KS ci ratio: 1.526729e-01	ci left: 3.458444e-04	ci right 4.035477e-04	k: 658	n:1760000
LRRC37A2   1760000 perm   1634 sec   (1077 perm/sec)   p_kst 3.738636e-04   p_cons 5.326727e-01   p_joint 9.715909e-04

Joint ci ratio: 9.447363e-02	ci left: 9.258340e-04	ci right 1.018184e-03	k: 1719	n:1770000
Cons ci ratio: 2.759867e-03	ci left: 5.319274e-01	ci right 5.333980e-01	k: 942813	n:1770000
KS ci ratio: 1.522116e-01	ci left: 3.460641e-04	ci right 4.036138e-04	k: 662	n:1770000
LRRC37A2   1770000 perm   1651 sec   (1072 perm/sec)   p_kst 3.740113e-04   p_cons 5.326627e-01   p_joint 9.711864e-04

Joint ci ratio: 9.425473e-02	ci left: 9.250210e-04	ci right 1.017064e-03	k: 1727	n:1780000
Cons ci ratio: 2.752180e-03	ci left: 5.319156e-01	ci right 5.333821e-01	k: 948115	n:1780000
KS ci ratio: 1.518685e-01	ci left: 3.457412e-04	ci right 4.030958e-04	k: 665	n:1780000
LRRC37A2   1780000 perm   1668 sec   (1067 perm/sec)   p_kst 3.735955e-04   p_cons 5.326489e-01   p_joint 9.702247e-04

Joint ci ratio: 9.409162e-02	ci left: 9.231263e-04	ci right 1.014813e-03	k: 1733	n:1790000
Cons ci ratio: 2.744419e-03	ci left: 5.319291e-01	ci right 5.333915e-01	k: 953462	n:1790000
KS ci ratio: 1.513015e-01	ci left: 3.464971e-04	ci right 4.037430e-04	k: 670	n:1790000
LRRC37A2   1790000 perm   1685 sec   (1062 perm/sec)   p_kst 3.743017e-04   p_cons 5.326603e-01   p_joint 9.681564e-04

Joint ci ratio: 9.382147e-02	ci left: 9.234228e-04	ci right 1.014862e-03	k: 1743	n:1800000
Cons ci ratio: 2.736878e-03	ci left: 5.319141e-01	ci right 5.333724e-01	k: 958758	n:1800000
KS ci ratio: 1.509644e-01	ci left: 3.461757e-04	ci right 4.032297e-04	k: 673	n:1800000
LRRC37A2   1800000 perm   1701 sec   (1058 perm/sec)   p_kst 3.738889e-04   p_cons 5.326433e-01   p_joint 9.683333e-04

Joint ci ratio: 9.366059e-02	ci left: 9.215582e-04	ci right 1.012647e-03	k: 1749	n:1810000
Cons ci ratio: 2.729236e-03	ci left: 5.319292e-01	ci right 5.333834e-01	k: 964108	n:1810000
KS ci ratio: 1.507410e-01	ci left: 3.453264e-04	ci right 4.021485e-04	k: 675	n:1810000
LRRC37A2   1810000 perm   1717 sec   (1054 perm/sec)   p_kst 3.729282e-04   p_cons 5.326564e-01   p_joint 9.662983e-04

Joint ci ratio: 9.331455e-02	ci left: 9.234706e-04	ci right 1.014393e-03	k: 1762	n:1820000
Cons ci ratio: 2.721672e-03	ci left: 5.319413e-01	ci right 5.333916e-01	k: 969453	n:1820000
KS ci ratio: 1.500764e-01	ci left: 3.466016e-04	ci right 4.033596e-04	k: 681	n:1820000
LRRC37A2   1820000 perm   1733 sec   (1050 perm/sec)   p_kst 3.741758e-04   p_cons 5.326665e-01   p_joint 9.681319e-04

Joint ci ratio: 9.297231e-02	ci left: 9.253627e-04	ci right 1.016119e-03	k: 1775	n:1830000
Cons ci ratio: 2.714061e-03	ci left: 5.319735e-01	ci right 5.334198e-01	k: 974835	n:1830000
KS ci ratio: 1.494205e-01	ci left: 3.478635e-04	ci right 4.045569e-04	k: 687	n:1830000
LRRC37A2   1830000 perm   1750 sec   (1046 perm/sec)   p_kst 3.754098e-04   p_cons 5.326967e-01   p_joint 9.699454e-04

Joint ci ratio: 9.268569e-02	ci left: 9.261731e-04	ci right 1.016714e-03	k: 1786	n:1840000
Cons ci ratio: 2.706750e-03	ci left: 5.319619e-01	ci right 5.334043e-01	k: 980137	n:1840000
KS ci ratio: 1.487731e-01	ci left: 3.491122e-04	ci right 4.057406e-04	k: 693	n:1840000
LRRC37A2   1840000 perm   1766 sec   (1042 perm/sec)   p_kst 3.766304e-04   p_cons 5.326832e-01   p_joint 9.706522e-04

Joint ci ratio: 9.242743e-02	ci left: 9.264470e-04	ci right 1.016749e-03	k: 1796	n:1850000
Cons ci ratio: 2.699298e-03	ci left: 5.319872e-01	ci right 5.334257e-01	k: 985507	n:1850000
KS ci ratio: 1.483462e-01	ci left: 3.493069e-04	ci right 4.057899e-04	k: 697	n:1850000
LRRC37A2   1850000 perm   1783 sec   (1038 perm/sec)   p_kst 3.767568e-04   p_cons 5.327065e-01   p_joint 9.708108e-04

Joint ci ratio: 9.214580e-02	ci left: 9.272436e-04	ci right 1.017333e-03	k: 1807	n:1860000
Cons ci ratio: 2.691913e-03	ci left: 5.320112e-01	ci right 5.334457e-01	k: 990875	n:1860000
KS ci ratio: 1.480284e-01	ci left: 3.489820e-04	ci right 4.052809e-04	k: 700	n:1860000
LRRC37A2   1860000 perm   1799 sec   (1034 perm/sec)   p_kst 3.763441e-04   p_cons 5.327285e-01   p_joint 9.715054e-04

Joint ci ratio: 9.181622e-02	ci left: 9.290771e-04	ci right 1.019004e-03	k: 1820	n:1870000
Cons ci ratio: 2.684654e-03	ci left: 5.320226e-01	ci right 5.334533e-01	k: 996220	n:1870000
KS ci ratio: 1.475033e-01	ci left: 3.496907e-04	ci right 4.058862e-04	k: 705	n:1870000
LRRC37A2   1870000 perm   1816 sec   (1030 perm/sec)   p_kst 3.770053e-04   p_cons 5.327380e-01   p_joint 9.732620e-04

Joint ci ratio: 9.171569e-02	ci left: 9.262140e-04	ci right 1.015760e-03	k: 1824	n:1880000
Cons ci ratio: 2.677560e-03	ci left: 5.320142e-01	ci right 5.334411e-01	k: 1001528	n:1880000
KS ci ratio: 1.472948e-01	ci left: 3.488552e-04	ci right 4.048303e-04	k: 707	n:1880000
LRRC37A2   1880000 perm   1833 sec   (1026 perm/sec)   p_kst 3.760638e-04   p_cons 5.327277e-01   p_joint 9.702128e-04

Joint ci ratio: 9.131612e-02	ci left: 9.295853e-04	ci right 1.019045e-03	k: 1840	n:1890000
Cons ci ratio: 2.670357e-03	ci left: 5.320365e-01	ci right 5.334597e-01	k: 1006894	n:1890000
KS ci ratio: 1.467774e-01	ci left: 3.495576e-04	ci right 4.054311e-04	k: 712	n:1890000
LRRC37A2   1890000 perm   1851 sec   (1021 perm/sec)   p_kst 3.767196e-04   p_cons 5.327481e-01   p_joint 9.735450e-04

Joint ci ratio: 9.104450e-02	ci left: 9.303502e-04	ci right 1.019603e-03	k: 1851	n:1900000
Cons ci ratio: 2.663280e-03	ci left: 5.320461e-01	ci right 5.334654e-01	k: 1012236	n:1900000
KS ci ratio: 1.465721e-01	ci left: 3.487319e-04	ci right 4.043885e-04	k: 714	n:1900000
LRRC37A2   1900000 perm   1869 sec   (1017 perm/sec)   p_kst 3.757895e-04   p_cons 5.327558e-01   p_joint 9.742105e-04

Joint ci ratio: 9.082410e-02	ci left: 9.300842e-04	ci right 1.019084e-03	k: 1860	n:1910000
Cons ci ratio: 2.656340e-03	ci left: 5.320403e-01	ci right 5.334559e-01	k: 1017549	n:1910000
KS ci ratio: 1.461638e-01	ci left: 3.489236e-04	ci right 4.044421e-04	k: 718	n:1910000
LRRC37A2   1910000 perm   1886 sec   (1013 perm/sec)   p_kst 3.759162e-04   p_cons 5.327482e-01   p_joint 9.738220e-04

Joint ci ratio: 9.062955e-02	ci left: 9.293121e-04	ci right 1.018038e-03	k: 1868	n:1920000
Cons ci ratio: 2.649259e-03	ci left: 5.320711e-01	ci right 5.334830e-01	k: 1022932	n:1920000
KS ci ratio: 1.458598e-01	ci left: 3.486117e-04	ci right 4.039552e-04	k: 721	n:1920000
LRRC37A2   1920000 perm   1903 sec   (1009 perm/sec)   p_kst 3.755208e-04   p_cons 5.327771e-01   p_joint 9.729167e-04

Joint ci ratio: 9.046037e-02	ci left: 9.280418e-04	ci right 1.016472e-03	k: 1875	n:1930000
Cons ci ratio: 2.642441e-03	ci left: 5.320626e-01	ci right 5.334709e-01	k: 1028240	n:1930000
KS ci ratio: 1.457590e-01	ci left: 3.473046e-04	ci right 4.023992e-04	k: 722	n:1930000
LRRC37A2   1930000 perm   1920 sec   (1005 perm/sec)   p_kst 3.740933e-04   p_cons 5.327668e-01   p_joint 9.715026e-04

Joint ci ratio: 9.029214e-02	ci left: 9.267847e-04	ci right 1.014922e-03	k: 1882	n:1940000
Cons ci ratio: 2.635515e-03	ci left: 5.320847e-01	ci right 5.334894e-01	k: 1033607	n:1940000
KS ci ratio: 1.452576e-01	ci left: 3.479979e-04	ci right 4.029961e-04	k: 727	n:1940000
LRRC37A2   1940000 perm   1937 sec   (1001 perm/sec)   p_kst 3.747423e-04   p_cons 5.327871e-01   p_joint 9.701031e-04

Joint ci ratio: 9.014871e-02	ci left: 9.250395e-04	ci right 1.012864e-03	k: 1888	n:1950000
Cons ci ratio: 2.628824e-03	ci left: 5.320722e-01	ci right 5.334733e-01	k: 1038907	n:1950000
KS ci ratio: 1.449592e-01	ci left: 3.476959e-04	ci right 4.025237e-04	k: 730	n:1950000
LRRC37A2   1950000 perm   1955 sec   (998 perm/sec)   p_kst 3.743590e-04   p_cons 5.327728e-01   p_joint 9.682051e-04

Joint ci ratio: 9.002975e-02	ci left: 9.228134e-04	ci right 1.010305e-03	k: 1893	n:1960000
Cons ci ratio: 2.622280e-03	ci left: 5.320415e-01	ci right 5.334390e-01	k: 1044171	n:1960000
KS ci ratio: 1.447614e-01	ci left: 3.469053e-04	ci right 4.015274e-04	k: 732	n:1960000
LRRC37A2   1960000 perm   1973 sec   (994 perm/sec)   p_kst 3.734694e-04   p_cons 5.327403e-01   p_joint 9.658163e-04

Joint ci ratio: 8.969874e-02	ci left: 9.250760e-04	ci right 1.012442e-03	k: 1907	n:1970000
Cons ci ratio: 2.615580e-03	ci left: 5.320502e-01	ci right 5.334441e-01	k: 1049512	n:1970000
KS ci ratio: 1.441724e-01	ci left: 3.480800e-04	ci right 4.026449e-04	k: 738	n:1970000
LRRC37A2   1970000 perm   1990 sec   (990 perm/sec)   p_kst 3.746193e-04   p_cons 5.327472e-01   p_joint 9.680203e-04

Joint ci ratio: 8.958155e-02	ci left: 9.228725e-04	ci right 1.009911e-03	k: 1912	n:1980000
Cons ci ratio: 2.608828e-03	ci left: 5.320785e-01	ci right 5.334689e-01	k: 1054892	n:1980000
KS ci ratio: 1.439778e-01	ci left: 3.472957e-04	ci right 4.016578e-04	k: 740	n:1980000
LRRC37A2   1980000 perm   2008 sec   (986 perm/sec)   p_kst 3.737374e-04   p_cons 5.327737e-01   p_joint 9.656566e-04

Joint ci ratio: 8.923227e-02	ci left: 9.256041e-04	ci right 1.012542e-03	k: 1927	n:1990000
Cons ci ratio: 2.602169e-03	ci left: 5.320985e-01	ci right 5.334854e-01	k: 1060256	n:1990000
KS ci ratio: 1.437840e-01	ci left: 3.465193e-04	ci right 4.006806e-04	k: 742	n:1990000
LRRC37A2   1990000 perm   2026 sec   (982 perm/sec)   p_kst 3.728643e-04   p_cons 5.327920e-01   p_joint 9.683417e-04

Joint ci ratio: 8.888705e-02	ci left: 9.283091e-04	ci right 1.015146e-03	k: 1942	n:2000000
Cons ci ratio: 2.595736e-03	ci left: 5.320847e-01	ci right 5.334682e-01	k: 1065553	n:2000000
KS ci ratio: 1.433985e-01	ci left: 3.467149e-04	ci right 4.007490e-04	k: 746	n:2000000
LRRC37A2   2000000 perm   2044 sec   (979 perm/sec)   p_kst 3.730000e-04   p_cons 5.327765e-01   p_joint 9.710000e-04

Joint ci ratio: 8.865919e-02	ci left: 9.285554e-04	ci right 1.015181e-03	k: 1952	n:2010000
Cons ci ratio: 2.589291e-03	ci left: 5.320826e-01	ci right 5.334626e-01	k: 1070873	n:2010000
KS ci ratio: 1.433986e-01	ci left: 3.449899e-04	ci right 3.987553e-04	k: 746	n:2010000
LRRC37A2   2010000 perm   2061 sec   (975 perm/sec)   p_kst 3.711443e-04   p_cons 5.327726e-01   p_joint 9.711443e-04

Joint ci ratio: 8.834302e-02	ci left: 9.307359e-04	ci right 1.017240e-03	k: 1966	n:2020000
Cons ci ratio: 2.582868e-03	ci left: 5.320854e-01	ci right 5.334620e-01	k: 1076203	n:2020000
KS ci ratio: 1.433987e-01	ci left: 3.432820e-04	ci right 3.967812e-04	k: 746	n:2020000
LRRC37A2   2020000 perm   2080 sec   (971 perm/sec)   p_kst 3.693069e-04   p_cons 5.327738e-01   p_joint 9.732673e-04

Joint ci ratio: 8.816395e-02	ci left: 9.300049e-04	ci right 1.016257e-03	k: 1974	n:2030000
Cons ci ratio: 2.576434e-03	ci left: 5.320996e-01	ci right 5.334727e-01	k: 1081556	n:2030000
KS ci ratio: 1.433030e-01	ci left: 3.420659e-04	ci right 3.953369e-04	k: 747	n:2030000
LRRC37A2   2030000 perm   2098 sec   (968 perm/sec)   p_kst 3.679803e-04   p_cons 5.327862e-01   p_joint 9.724138e-04

Joint ci ratio: 8.800818e-02	ci left: 9.288018e-04	ci right 1.014782e-03	k: 1981	n:2040000
Cons ci ratio: 2.570289e-03	ci left: 5.320670e-01	ci right 5.334368e-01	k: 1086814	n:2040000
KS ci ratio: 1.431118e-01	ci left: 3.413344e-04	ci right 3.944145e-04	k: 749	n:2040000
LRRC37A2   2040000 perm   2117 sec   (964 perm/sec)   p_kst 3.671569e-04   p_cons 5.327520e-01   p_joint 9.710784e-04

Joint ci ratio: 8.785324e-02	ci left: 9.276106e-04	ci right 1.013321e-03	k: 1988	n:2050000
Cons ci ratio: 2.564114e-03	ci left: 5.320489e-01	ci right 5.334154e-01	k: 1092101	n:2050000
KS ci ratio: 1.428265e-01	ci left: 3.410804e-04	ci right 3.940063e-04	k: 752	n:2050000
LRRC37A2   2050000 perm   2136 sec   (960 perm/sec)   p_kst 3.668293e-04   p_cons 5.327322e-01   p_joint 9.697561e-04

Joint ci ratio: 8.756747e-02	ci left: 9.292799e-04	ci right 1.014851e-03	k: 2001	n:2060000
Cons ci ratio: 2.557928e-03	ci left: 5.320417e-01	ci right 5.334048e-01	k: 1097410	n:2060000
KS ci ratio: 1.424486e-01	ci left: 3.412971e-04	ci right 3.941046e-04	k: 756	n:2060000
LRRC37A2   2060000 perm   2154 sec   (956 perm/sec)   p_kst 3.669903e-04   p_cons 5.327233e-01   p_joint 9.713592e-04

Joint ci ratio: 8.717627e-02	ci left: 9.332964e-04	ci right 1.018834e-03	k: 2019	n:2070000
Cons ci ratio: 2.551743e-03	ci left: 5.320432e-01	ci right 5.334031e-01	k: 1102737	n:2070000
KS ci ratio: 1.419804e-01	ci left: 3.419779e-04	ci right 3.947021e-04	k: 761	n:2070000
LRRC37A2   2070000 perm   2173 sec   (953 perm/sec)   p_kst 3.676329e-04   p_cons 5.327232e-01   p_joint 9.753623e-04

Joint ci ratio: 8.700419e-02	ci left: 9.325718e-04	ci right 1.017866e-03	k: 2027	n:2080000
Cons ci ratio: 2.545587e-03	ci left: 5.320476e-01	ci right 5.334042e-01	k: 1108070	n:2080000
KS ci ratio: 1.417945e-01	ci left: 3.412611e-04	ci right 3.938001e-04	k: 763	n:2080000
LRRC37A2   2080000 perm   2191 sec   (949 perm/sec)   p_kst 3.668269e-04   p_cons 5.327260e-01   p_joint 9.745192e-04

Joint ci ratio: 8.681179e-02	ci left: 9.323223e-04	ci right 1.017396e-03	k: 2036	n:2090000
Cons ci ratio: 2.539601e-03	ci left: 5.320276e-01	ci right 5.333809e-01	k: 1113352	n:2090000
KS ci ratio: 1.412409e-01	ci left: 3.423975e-04	ci right 3.948883e-04	k: 769	n:2090000
LRRC37A2   2090000 perm   2210 sec   (946 perm/sec)   p_kst 3.679426e-04   p_cons 5.327043e-01   p_joint 9.741627e-04

Joint ci ratio: 8.664186e-02	ci left: 9.316096e-04	ci right 1.016443e-03	k: 2044	n:2100000
Cons ci ratio: 2.533530e-03	ci left: 5.320325e-01	ci right 5.333826e-01	k: 1118686	n:2100000
KS ci ratio: 1.407845e-01	ci left: 3.430640e-04	ci right 3.954728e-04	k: 774	n:2100000
LRRC37A2   2100000 perm   2229 sec   (942 perm/sec)   p_kst 3.685714e-04   p_cons 5.327076e-01   p_joint 9.733333e-04

Joint ci ratio: 8.636771e-02	ci left: 9.332223e-04	ci right 1.017920e-03	k: 2057	n:2110000
Cons ci ratio: 2.527413e-03	ci left: 5.320550e-01	ci right 5.334018e-01	k: 1124057	n:2110000
KS ci ratio: 1.397068e-01	ci left: 3.469258e-04	ci right 3.994851e-04	k: 786	n:2110000
LRRC37A2   2110000 perm   2248 sec   (939 perm/sec)   p_kst 3.725118e-04   p_cons 5.327284e-01   p_joint 9.748815e-04

Joint ci ratio: 8.611695e-02	ci left: 9.343586e-04	ci right 1.018901e-03	k: 2069	n:2120000
Cons ci ratio: 2.521511e-03	ci left: 5.320437e-01	ci right 5.333874e-01	k: 1129357	n:2120000
KS ci ratio: 1.392651e-01	ci left: 3.475656e-04	ci right 4.000414e-04	k: 791	n:2120000
LRRC37A2   2120000 perm   2269 sec   (934 perm/sec)   p_kst 3.731132e-04   p_cons 5.327156e-01   p_joint 9.759434e-04

Joint ci ratio: 8.601323e-02	ci left: 9.322688e-04	ci right 1.016515e-03	k: 2074	n:2130000
Cons ci ratio: 2.515573e-03	ci left: 5.320475e-01	ci right 5.333881e-01	k: 1134689	n:2130000
KS ci ratio: 1.390896e-01	ci left: 3.468401e-04	ci right 3.991349e-04	k: 793	n:2130000
LRRC37A2   2130000 perm   2287 sec   (931 perm/sec)   p_kst 3.723005e-04   p_cons 5.327178e-01   p_joint 9.737089e-04

Joint ci ratio: 8.582732e-02	ci left: 9.320276e-04	ci right 1.016061e-03	k: 2083	n:2140000
Cons ci ratio: 2.509590e-03	ci left: 5.320686e-01	ci right 5.334060e-01	k: 1140058	n:2140000
KS ci ratio: 1.388276e-01	ci left: 3.465724e-04	ci right 3.987204e-04	k: 796	n:2140000
LRRC37A2   2140000 perm   2309 sec   (927 perm/sec)   p_kst 3.719626e-04   p_cons 5.327374e-01   p_joint 9.733645e-04

Joint ci ratio: 8.564260e-02	ci left: 9.317889e-04	ci right 1.015611e-03	k: 2092	n:2150000
Cons ci ratio: 2.503858e-03	ci left: 5.320482e-01	ci right 5.333824e-01	k: 1145338	n:2150000
KS ci ratio: 1.384806e-01	ci left: 3.467564e-04	ci right 3.987909e-04	k: 800	n:2150000
LRRC37A2   2150000 perm   2328 sec   (924 perm/sec)   p_kst 3.720930e-04   p_cons 5.327153e-01   p_joint 9.730233e-04

Joint ci ratio: 8.547943e-02	ci left: 9.310995e-04	ci right 1.014692e-03	k: 2100	n:2160000
Cons ci ratio: 2.497884e-03	ci left: 5.320839e-01	ci right 5.334151e-01	k: 1150739	n:2160000
KS ci ratio: 1.381361e-01	ci left: 3.469388e-04	ci right 3.988605e-04	k: 804	n:2160000
LRRC37A2   2160000 perm   2346 sec   (921 perm/sec)   p_kst 3.722222e-04   p_cons 5.327495e-01   p_joint 9.722222e-04

Joint ci ratio: 8.521613e-02	ci left: 9.326717e-04	ci right 1.016135e-03	k: 2113	n:2170000
Cons ci ratio: 2.492238e-03	ci left: 5.320622e-01	ci right 5.333903e-01	k: 1156016	n:2170000
KS ci ratio: 1.375393e-01	ci left: 3.484546e-04	ci right 4.003594e-04	k: 811	n:2170000
LRRC37A2   2170000 perm   2366 sec   (917 perm/sec)   p_kst 3.737327e-04   p_cons 5.327263e-01   p_joint 9.737327e-04

Joint ci ratio: 8.495526e-02	ci left: 9.342298e-04	ci right 1.017564e-03	k: 2126	n:2180000
Cons ci ratio: 2.486635e-03	ci left: 5.320397e-01	ci right 5.333648e-01	k: 1161291	n:2180000
KS ci ratio: 1.372017e-01	ci left: 3.486280e-04	ci right 4.004207e-04	k: 815	n:2180000
LRRC37A2   2180000 perm   2385 sec   (914 perm/sec)   p_kst 3.738532e-04   p_cons 5.327023e-01   p_joint 9.752294e-04

Joint ci ratio: 8.475625e-02	ci left: 9.344333e-04	ci right 1.017580e-03	k: 2136	n:2190000
Cons ci ratio: 2.480867e-03	ci left: 5.320581e-01	ci right 5.333802e-01	k: 1166655	n:2190000
KS ci ratio: 1.372018e-01	ci left: 3.470361e-04	ci right 3.985924e-04	k: 815	n:2190000
LRRC37A2   2190000 perm   2405 sec   (911 perm/sec)   p_kst 3.721461e-04   p_cons 5.327192e-01   p_joint 9.753425e-04

Joint ci ratio: 8.457835e-02	ci left: 9.341901e-04	ci right 1.017132e-03	k: 2145	n:2200000
Cons ci ratio: 2.475347e-03	ci left: 5.320345e-01	ci right 5.333536e-01	k: 1171927	n:2200000
KS ci ratio: 1.367834e-01	ci left: 3.476535e-04	ci right 3.991311e-04	k: 820	n:2200000
LRRC37A2   2200000 perm   2426 sec   (907 perm/sec)   p_kst 3.727273e-04   p_cons 5.326941e-01   p_joint 9.750000e-04

Joint ci ratio: 8.442117e-02	ci left: 9.335064e-04	ci right 1.016226e-03	k: 2153	n:2210000
Cons ci ratio: 2.469644e-03	ci left: 5.320555e-01	ci right 5.333716e-01	k: 1177297	n:2210000
KS ci ratio: 1.363687e-01	ci left: 3.482655e-04	ci right 3.996648e-04	k: 825	n:2210000
LRRC37A2   2210000 perm   2454 sec   (901 perm/sec)   p_kst 3.733032e-04   p_cons 5.327136e-01   p_joint 9.742081e-04

Joint ci ratio: 8.418695e-02	ci left: 9.345929e-04	ci right 1.017168e-03	k: 2165	n:2220000
Cons ci ratio: 2.464185e-03	ci left: 5.320349e-01	ci right 5.333479e-01	k: 1182575	n:2220000
KS ci ratio: 1.361218e-01	ci left: 3.480021e-04	ci right 3.992619e-04	k: 828	n:2220000
LRRC37A2   2220000 perm   2474 sec   (897 perm/sec)   p_kst 3.729730e-04   p_cons 5.326914e-01   p_joint 9.752252e-04

Joint ci ratio: 8.401260e-02	ci left: 9.343529e-04	ci right 1.016728e-03	k: 2174	n:2230000
Cons ci ratio: 2.458612e-03	ci left: 5.320449e-01	ci right 5.333550e-01	k: 1187921	n:2230000
KS ci ratio: 1.358762e-01	ci left: 3.477410e-04	ci right 3.988625e-04	k: 831	n:2230000
LRRC37A2   2230000 perm   2495 sec   (894 perm/sec)   p_kst 3.726457e-04   p_cons 5.327000e-01   p_joint 9.748879e-04

Joint ci ratio: 8.383934e-02	ci left: 9.341152e-04	ci right 1.016291e-03	k: 2183	n:2240000
Cons ci ratio: 2.453203e-03	ci left: 5.320289e-01	ci right 5.333361e-01	k: 1193209	n:2240000
KS ci ratio: 1.358763e-01	ci left: 3.461886e-04	ci right 3.970819e-04	k: 831	n:2240000
LRRC37A2   2240000 perm   2515 sec   (891 perm/sec)   p_kst 3.709821e-04   p_cons 5.326826e-01   p_joint 9.745536e-04

Joint ci ratio: 8.364805e-02	ci left: 9.343150e-04	ci right 1.016311e-03	k: 2193	n:2250000
Cons ci ratio: 2.447736e-03	ci left: 5.320323e-01	ci right 5.333365e-01	k: 1198540	n:2250000
KS ci ratio: 1.355508e-01	ci left: 3.463674e-04	ci right 3.971552e-04	k: 835	n:2250000
LRRC37A2   2250000 perm   2536 sec   (887 perm/sec)   p_kst 3.711111e-04   p_cons 5.326844e-01   p_joint 9.746667e-04

Joint ci ratio: 8.349599e-02	ci left: 9.336467e-04	ci right 1.015428e-03	k: 2201	n:2260000
Cons ci ratio: 2.442330e-03	ci left: 5.320307e-01	ci right 5.333321e-01	k: 1203860	n:2260000
KS ci ratio: 1.351472e-01	ci left: 3.469723e-04	ci right 3.976851e-04	k: 840	n:2260000
LRRC37A2   2260000 perm   2556 sec   (884 perm/sec)   p_kst 3.716814e-04   p_cons 5.326814e-01   p_joint 9.738938e-04

Joint ci ratio: 8.330704e-02	ci left: 9.338471e-04	ci right 1.015452e-03	k: 2211	n:2270000
Cons ci ratio: 2.436750e-03	ci left: 5.320718e-01	ci right 5.333704e-01	k: 1209277	n:2270000
KS ci ratio: 1.349068e-01	ci left: 3.467207e-04	ci right 3.972994e-04	k: 843	n:2270000
LRRC37A2   2270000 perm   2576 sec   (881 perm/sec)   p_kst 3.713656e-04   p_cons 5.327211e-01   p_joint 9.740088e-04

Joint ci ratio: 8.313809e-02	ci left: 9.336165e-04	ci right 1.015028e-03	k: 2220	n:2280000
Cons ci ratio: 2.431414e-03	ci left: 5.320705e-01	ci right 5.333662e-01	k: 1214598	n:2280000
KS ci ratio: 1.349070e-01	ci left: 3.452000e-04	ci right 3.955569e-04	k: 843	n:2280000
LRRC37A2   2280000 perm   2596 sec   (878 perm/sec)   p_kst 3.697368e-04   p_cons 5.327184e-01   p_joint 9.736842e-04

Joint ci ratio: 8.293295e-02	ci left: 9.342433e-04	ci right 1.015499e-03	k: 2231	n:2290000
Cons ci ratio: 2.425980e-03	ci left: 5.320963e-01	ci right 5.333892e-01	k: 1219981	n:2290000
KS ci ratio: 1.345884e-01	ci left: 3.453804e-04	ci right 3.956352e-04	k: 847	n:2290000
LRRC37A2   2290000 perm   2616 sec   (875 perm/sec)   p_kst 3.698690e-04   p_cons 5.327428e-01   p_joint 9.742358e-04

Joint ci ratio: 8.274779e-02	ci left: 9.344392e-04	ci right 1.015521e-03	k: 2241	n:2300000
Cons ci ratio: 2.420689e-03	ci left: 5.321002e-01	ci right 5.333902e-01	k: 1225314	n:2300000
KS ci ratio: 1.341933e-01	ci left: 3.459796e-04	ci right 3.961620e-04	k: 852	n:2300000
LRRC37A2   2300000 perm   2637 sec   (872 perm/sec)   p_kst 3.704348e-04   p_cons 5.327452e-01   p_joint 9.743478e-04

Joint ci ratio: 8.250887e-02	ci left: 9.359054e-04	ci right 1.016869e-03	k: 2254	n:2310000
Cons ci ratio: 2.415323e-03	ci left: 5.321265e-01	ci right 5.334137e-01	k: 1230699	n:2310000
KS ci ratio: 1.338017e-01	ci left: 3.465738e-04	ci right 3.966840e-04	k: 857	n:2310000
LRRC37A2   2310000 perm   2657 sec   (869 perm/sec)   p_kst 3.709957e-04   p_cons 5.327701e-01   p_joint 9.757576e-04

Joint ci ratio: 8.236293e-02	ci left: 9.352485e-04	ci right 1.016005e-03	k: 2262	n:2320000
Cons ci ratio: 2.410074e-03	ci left: 5.321358e-01	ci right 5.334202e-01	k: 1236045	n:2320000
KS ci ratio: 1.336461e-01	ci left: 3.459132e-04	ci right 3.958650e-04	k: 859	n:2320000
LRRC37A2   2320000 perm   2679 sec   (866 perm/sec)   p_kst 3.702586e-04   p_cons 5.327780e-01   p_joint 9.750000e-04

Joint ci ratio: 8.223589e-02	ci left: 9.341770e-04	ci right 1.014711e-03	k: 2269	n:2330000
Cons ci ratio: 2.404989e-03	ci left: 5.321179e-01	ci right 5.333996e-01	k: 1241328	n:2330000
KS ci ratio: 1.334136e-01	ci left: 3.456731e-04	ci right 3.954966e-04	k: 862	n:2330000
LRRC37A2   2330000 perm   2700 sec   (863 perm/sec)   p_kst 3.699571e-04   p_cons 5.327588e-01   p_joint 9.738197e-04

Joint ci ratio: 8.201934e-02	ci left: 9.352077e-04	ci right 1.015608e-03	k: 2281	n:2340000
Cons ci ratio: 2.399838e-03	ci left: 5.321207e-01	ci right 5.333997e-01	k: 1246659	n:2340000
KS ci ratio: 1.328757e-01	ci left: 3.470877e-04	ci right 3.968974e-04	k: 869	n:2340000
LRRC37A2   2340000 perm   2721 sec   (860 perm/sec)   p_kst 3.713675e-04   p_cons 5.327603e-01   p_joint 9.747863e-04

Joint ci ratio: 8.178666e-02	ci left: 9.366468e-04	ci right 1.016932e-03	k: 2294	n:2350000
Cons ci ratio: 2.394850e-03	ci left: 5.320963e-01	ci right 5.333725e-01	k: 1251926	n:2350000
KS ci ratio: 1.324198e-01	ci left: 3.480792e-04	ci right 3.978464e-04	k: 875	n:2350000
LRRC37A2   2350000 perm   2742 sec   (857 perm/sec)   p_kst 3.723404e-04   p_cons 5.327345e-01   p_joint 9.761702e-04

Joint ci ratio: 8.159134e-02	ci left: 9.372437e-04	ci right 1.017379e-03	k: 2305	n:2360000
Cons ci ratio: 2.389816e-03	ci left: 5.320882e-01	ci right 5.333617e-01	k: 1257231	n:2360000
KS ci ratio: 1.321185e-01	ci left: 3.482431e-04	ci right 3.979115e-04	k: 879	n:2360000
LRRC37A2   2360000 perm   2764 sec   (854 perm/sec)   p_kst 3.724576e-04   p_cons 5.327250e-01   p_joint 9.766949e-04

Joint ci ratio: 8.134471e-02	ci left: 9.390760e-04	ci right 1.019113e-03	k: 2319	n:2370000
Cons ci ratio: 2.384764e-03	ci left: 5.320907e-01	ci right 5.333615e-01	k: 1262561	n:2370000
KS ci ratio: 1.318192e-01	ci left: 3.484058e-04	ci right 3.979760e-04	k: 883	n:2370000
LRRC37A2   2370000 perm   2785 sec   (851 perm/sec)   p_kst 3.725738e-04   p_cons 5.327262e-01   p_joint 9.784810e-04

Joint ci ratio: 8.106555e-02	ci left: 9.417165e-04	ci right 1.021691e-03	k: 2335	n:2380000
Cons ci ratio: 2.379779e-03	ci left: 5.320856e-01	ci right 5.333538e-01	k: 1267873	n:2380000
KS ci ratio: 1.315220e-01	ci left: 3.485672e-04	ci right 3.980399e-04	k: 887	n:2380000
LRRC37A2   2380000 perm   2806 sec   (848 perm/sec)   p_kst 3.726891e-04   p_cons 5.327197e-01   p_joint 9.810924e-04

Joint ci ratio: 8.097901e-02	ci left: 9.398259e-04	ci right 1.019550e-03	k: 2340	n:2390000
Cons ci ratio: 2.374860e-03	ci left: 5.320735e-01	ci right 5.333390e-01	k: 1273168	n:2390000
KS ci ratio: 1.315221e-01	ci left: 3.471088e-04	ci right 3.963745e-04	k: 887	n:2390000
LRRC37A2   2390000 perm   2827 sec   (845 perm/sec)   p_kst 3.711297e-04   p_cons 5.327063e-01   p_joint 9.790795e-04

Joint ci ratio: 8.082381e-02	ci left: 9.395841e-04	ci right 1.019128e-03	k: 2349	n:2400000
Cons ci ratio: 2.369931e-03	ci left: 5.320698e-01	ci right 5.333326e-01	k: 1278483	n:2400000
KS ci ratio: 1.313743e-01	ci left: 3.464684e-04	ci right 3.955836e-04	k: 889	n:2400000
LRRC37A2   2400000 perm   2849 sec   (842 perm/sec)   p_kst 3.704167e-04   p_cons 5.327013e-01   p_joint 9.787500e-04

Joint ci ratio: 8.058406e-02	ci left: 9.413773e-04	ci right 1.020825e-03	k: 2363	n:2410000
Cons ci ratio: 2.364944e-03	ci left: 5.320848e-01	ci right 5.333450e-01	k: 1283843	n:2410000
KS ci ratio: 1.312270e-01	ci left: 3.458334e-04	ci right 3.947993e-04	k: 891	n:2410000
LRRC37A2   2410000 perm   2872 sec   (839 perm/sec)   p_kst 3.697095e-04   p_cons 5.327149e-01   p_joint 9.804979e-04

Joint ci ratio: 8.038027e-02	ci left: 9.423462e-04	ci right 1.021666e-03	k: 2375	n:2420000
Cons ci ratio: 2.360157e-03	ci left: 5.320641e-01	ci right 5.333218e-01	k: 1289117	n:2420000
KS ci ratio: 1.307150e-01	ci left: 3.472021e-04	ci right 3.961552e-04	k: 898	n:2420000
LRRC37A2   2420000 perm   2894 sec   (836 perm/sec)   p_kst 3.710744e-04   p_cons 5.326930e-01   p_joint 9.814050e-04

Joint ci ratio: 8.029591e-02	ci left: 9.404845e-04	ci right 1.019560e-03	k: 2380	n:2430000
Cons ci ratio: 2.355396e-03	ci left: 5.320440e-01	ci right 5.332991e-01	k: 1294392	n:2430000
KS ci ratio: 1.304975e-01	ci left: 3.469675e-04	ci right 3.957998e-04	k: 901	n:2430000
LRRC37A2   2430000 perm   2916 sec   (833 perm/sec)   p_kst 3.707819e-04   p_cons 5.326716e-01   p_joint 9.794239e-04

Joint ci ratio: 8.009429e-02	ci left: 9.414495e-04	ci right 1.020398e-03	k: 2392	n:2440000
Cons ci ratio: 2.350520e-03	ci left: 5.320549e-01	ci right 5.333073e-01	k: 1299742	n:2440000
KS ci ratio: 1.302810e-01	ci left: 3.467349e-04	ci right 3.954473e-04	k: 904	n:2440000
LRRC37A2   2440000 perm   2938 sec   (830 perm/sec)   p_kst 3.704918e-04   p_cons 5.326811e-01   p_joint 9.803279e-04

Joint ci ratio: 7.994411e-02	ci left: 9.412068e-04	ci right 1.019980e-03	k: 2401	n:2450000
Cons ci ratio: 2.345823e-03	ci left: 5.320338e-01	ci right 5.332837e-01	k: 1305014	n:2450000
KS ci ratio: 1.299226e-01	ci left: 3.472941e-04	ci right 3.959404e-04	k: 909	n:2450000
LRRC37A2   2450000 perm   2960 sec   (828 perm/sec)   p_kst 3.710204e-04   p_cons 5.326588e-01   p_joint 9.800000e-04

Joint ci ratio: 7.977821e-02	ci left: 9.413646e-04	ci right 1.019980e-03	k: 2411	n:2460000
Cons ci ratio: 2.341061e-03	ci left: 5.320328e-01	ci right 5.332801e-01	k: 1310335	n:2460000
KS ci ratio: 1.297801e-01	ci left: 3.466689e-04	ci right 3.951703e-04	k: 911	n:2460000
LRRC37A2   2460000 perm   2982 sec   (825 perm/sec)   p_kst 3.703252e-04   p_cons 5.326565e-01   p_joint 9.800813e-04

Joint ci ratio: 7.958046e-02	ci left: 9.423150e-04	ci right 1.020806e-03	k: 2423	n:2470000
Cons ci ratio: 2.336347e-03	ci left: 5.320277e-01	ci right 5.332726e-01	k: 1315646	n:2470000
KS ci ratio: 1.294964e-01	ci left: 3.468323e-04	ci right 3.952423e-04	k: 915	n:2470000
LRRC37A2   2470000 perm   3005 sec   (822 perm/sec)   p_kst 3.704453e-04   p_cons 5.326502e-01   p_joint 9.809717e-04

Joint ci ratio: 7.946585e-02	ci left: 9.412817e-04	ci right 1.019568e-03	k: 2430	n:2480000
Cons ci ratio: 2.331738e-03	ci left: 5.320062e-01	ci right 5.332485e-01	k: 1320916	n:2480000
KS ci ratio: 1.290043e-01	ci left: 3.481651e-04	ci right 3.965624e-04	k: 922	n:2480000
LRRC37A2   2480000 perm   3028 sec   (819 perm/sec)   p_kst 3.717742e-04   p_cons 5.326274e-01   p_joint 9.798387e-04

Joint ci ratio: 7.930291e-02	ci left: 9.414378e-04	ci right 1.019570e-03	k: 2440	n:2490000
Cons ci ratio: 2.327127e-03	ci left: 5.319913e-01	ci right 5.332311e-01	k: 1326202	n:2490000
KS ci ratio: 1.286563e-01	ci left: 3.487102e-04	ci right 3.970425e-04	k: 927	n:2490000
LRRC37A2   2490000 perm   3050 sec   (816 perm/sec)   p_kst 3.722892e-04   p_cons 5.326112e-01   p_joint 9.799197e-04

Joint ci ratio: 7.915713e-02	ci left: 9.412007e-04	ci right 1.019163e-03	k: 2449	n:2500000
Cons ci ratio: 2.322338e-03	ci left: 5.320205e-01	ci right 5.332578e-01	k: 1331598	n:2500000
KS ci ratio: 1.286564e-01	ci left: 3.473153e-04	ci right 3.954543e-04	k: 927	n:2500000
LRRC37A2   2500000 perm   3073 sec   (814 perm/sec)   p_kst 3.708000e-04   p_cons 5.326392e-01   p_joint 9.796000e-04

Joint ci ratio: 7.898001e-02	ci left: 9.417468e-04	ci right 1.019571e-03	k: 2460	n:2510000
Cons ci ratio: 2.317695e-03	ci left: 5.320244e-01	ci right 5.332592e-01	k: 1336931	n:2510000
KS ci ratio: 1.283112e-01	ci left: 3.478596e-04	ci right 3.959348e-04	k: 932	n:2510000
LRRC37A2   2510000 perm   3097 sec   (810 perm/sec)   p_kst 3.713147e-04   p_cons 5.326418e-01   p_joint 9.800797e-04

Joint ci ratio: 7.885198e-02	ci left: 9.411216e-04	ci right 1.018763e-03	k: 2468	n:2520000
Cons ci ratio: 2.313068e-03	ci left: 5.320306e-01	ci right 5.332630e-01	k: 1342270	n:2520000
KS ci ratio: 1.276966e-01	ci left: 3.499363e-04	ci right 3.980494e-04	k: 941	n:2520000
LRRC37A2   2520000 perm   3120 sec   (808 perm/sec)   p_kst 3.734127e-04   p_cons 5.326468e-01   p_joint 9.793651e-04

Joint ci ratio: 7.866102e-02	ci left: 9.420515e-04	ci right 1.019572e-03	k: 2480	n:2530000
Cons ci ratio: 2.308466e-03	ci left: 5.320375e-01	ci right 5.332675e-01	k: 1347611	n:2530000
KS ci ratio: 1.274263e-01	ci left: 3.500838e-04	ci right 3.981075e-04	k: 945	n:2530000
LRRC37A2   2530000 perm   3144 sec   (805 perm/sec)   p_kst 3.735178e-04   p_cons 5.326526e-01   p_joint 9.802372e-04

Joint ci ratio: 7.843995e-02	ci left: 9.437462e-04	ci right 1.021178e-03	k: 2494	n:2540000
Cons ci ratio: 2.303977e-03	ci left: 5.320259e-01	ci right 5.332535e-01	k: 1352905	n:2540000
KS ci ratio: 1.272919e-01	ci left: 3.494678e-04	ci right 3.973526e-04	k: 947	n:2540000
LRRC37A2   2540000 perm   3167 sec   (802 perm/sec)   p_kst 3.728346e-04   p_cons 5.326398e-01   p_joint 9.818898e-04

Joint ci ratio: 7.834586e-02	ci left: 9.423520e-04	ci right 1.019573e-03	k: 2500	n:2550000
Cons ci ratio: 2.299298e-03	ci left: 5.320611e-01	ci right 5.332863e-01	k: 1358318	n:2550000
KS ci ratio: 1.270910e-01	ci left: 3.492364e-04	ci right 3.970083e-04	k: 950	n:2550000
LRRC37A2   2550000 perm   3197 sec   (798 perm/sec)   p_kst 3.725490e-04   p_cons 5.326737e-01   p_joint 9.803922e-04

Joint ci ratio: 7.815855e-02	ci left: 9.432667e-04	ci right 1.020369e-03	k: 2512	n:2560000
Cons ci ratio: 2.294716e-03	ci left: 5.320812e-01	ci right 5.333039e-01	k: 1363693	n:2560000
KS ci ratio: 1.266919e-01	ci left: 3.501415e-04	ci right 3.978755e-04	k: 956	n:2560000
LRRC37A2   2560000 perm   3220 sec   (795 perm/sec)   p_kst 3.734375e-04   p_cons 5.326926e-01   p_joint 9.812500e-04

Joint ci ratio: 7.794168e-02	ci left: 9.449376e-04	ci right 1.021953e-03	k: 2526	n:2570000
Cons ci ratio: 2.290100e-03	ci left: 5.321143e-01	ci right 5.333347e-01	k: 1369102	n:2570000
KS ci ratio: 1.262965e-01	ci left: 3.510399e-04	ci right 3.987358e-04	k: 962	n:2570000
LRRC37A2   2570000 perm   3242 sec   (793 perm/sec)   p_kst 3.743191e-04   p_cons 5.327245e-01   p_joint 9.828794e-04

Joint ci ratio: 7.783399e-02	ci left: 9.439354e-04	ci right 1.020758e-03	k: 2533	n:2580000
Cons ci ratio: 2.285631e-03	ci left: 5.321212e-01	ci right 5.333392e-01	k: 1374444	n:2580000
KS ci ratio: 1.260351e-01	ci left: 3.511807e-04	ci right 3.987896e-04	k: 966	n:2580000
LRRC37A2   2580000 perm   3266 sec   (790 perm/sec)   p_kst 3.744186e-04   p_cons 5.327302e-01   p_joint 9.817829e-04

Joint ci ratio: 7.763505e-02	ci left: 9.452126e-04	ci right 1.021933e-03	k: 2546	n:2590000
Cons ci ratio: 2.281196e-03	ci left: 5.321265e-01	ci right 5.333421e-01	k: 1379782	n:2590000
KS ci ratio: 1.256458e-01	ci left: 3.520685e-04	ci right 3.996394e-04	k: 972	n:2590000
LRRC37A2   2590000 perm   3290 sec   (787 perm/sec)   p_kst 3.752896e-04   p_cons 5.327344e-01   p_joint 9.830116e-04

Joint ci ratio: 7.745278e-02	ci left: 9.461031e-04	ci right 1.022708e-03	k: 2558	n:2600000
Cons ci ratio: 2.276733e-03	ci left: 5.321433e-01	ci right 5.333566e-01	k: 1385150	n:2600000
KS ci ratio: 1.253883e-01	ci left: 3.522045e-04	ci right 3.996891e-04	k: 976	n:2600000
LRRC37A2   2600000 perm   3315 sec   (784 perm/sec)   p_kst 3.753846e-04   p_cons 5.327500e-01   p_joint 9.838462e-04

Joint ci ratio: 7.725675e-02	ci left: 9.473627e-04	ci right 1.023866e-03	k: 2571	n:2610000
Cons ci ratio: 2.272449e-03	ci left: 5.321267e-01	ci right 5.333376e-01	k: 1390431	n:2610000
KS ci ratio: 1.253243e-01	ci left: 3.512262e-04	ci right 3.985528e-04	k: 977	n:2610000
LRRC37A2   2610000 perm   3338 sec   (782 perm/sec)   p_kst 3.743295e-04   p_cons 5.327322e-01   p_joint 9.850575e-04

Joint ci ratio: 7.713690e-02	ci left: 9.467413e-04	ci right 1.023071e-03	k: 2579	n:2620000
Cons ci ratio: 2.268061e-03	ci left: 5.321380e-01	ci right 5.333467e-01	k: 1395785	n:2620000
KS ci ratio: 1.252603e-01	ci left: 3.502554e-04	ci right 3.974253e-04	k: 978	n:2620000
LRRC37A2   2620000 perm   3365 sec   (779 perm/sec)   p_kst 3.732824e-04   p_cons 5.327424e-01   p_joint 9.843511e-04

Joint ci ratio: 7.703251e-02	ci left: 9.457518e-04	ci right 1.021894e-03	k: 2586	n:2630000
Cons ci ratio: 2.263822e-03	ci left: 5.321223e-01	ci right 5.333286e-01	k: 1401068	n:2630000
KS ci ratio: 1.251965e-01	ci left: 3.492919e-04	ci right 3.963063e-04	k: 979	n:2630000
LRRC37A2   2630000 perm   3390 sec   (776 perm/sec)   p_kst 3.722433e-04   p_cons 5.327255e-01   p_joint 9.832700e-04

Joint ci ratio: 7.686924e-02	ci left: 9.462559e-04	ci right 1.022270e-03	k: 2597	n:2640000
Cons ci ratio: 2.259612e-03	ci left: 5.321055e-01	ci right 5.333096e-01	k: 1406348	n:2640000
KS ci ratio: 1.248149e-01	ci left: 3.501705e-04	ci right 3.971489e-04	k: 985	n:2640000
LRRC37A2   2640000 perm   3414 sec   (773 perm/sec)   p_kst 3.731061e-04   p_cons 5.327076e-01   p_joint 9.837121e-04

Joint ci ratio: 7.678069e-02	ci left: 9.449058e-04	ci right 1.020720e-03	k: 2603	n:2650000
Cons ci ratio: 2.255454e-03	ci left: 5.320825e-01	ci right 5.332843e-01	k: 1411611	n:2650000
KS ci ratio: 1.247517e-01	ci left: 3.492147e-04	ci right 3.960394e-04	k: 986	n:2650000
LRRC37A2   2650000 perm   3440 sec   (770 perm/sec)   p_kst 3.720755e-04   p_cons 5.326834e-01   p_joint 9.822642e-04

Joint ci ratio: 7.661901e-02	ci left: 9.454095e-04	ci right 1.021097e-03	k: 2614	n:2660000
Cons ci ratio: 2.251054e-03	ci left: 5.321182e-01	ci right 5.333178e-01	k: 1417030	n:2660000
KS ci ratio: 1.245626e-01	ci left: 3.489945e-04	ci right 3.957135e-04	k: 989	n:2660000
LRRC37A2   2660000 perm   3465 sec   (768 perm/sec)   p_kst 3.718045e-04   p_cons 5.327180e-01   p_joint 9.827068e-04

Joint ci ratio: 7.648752e-02	ci left: 9.451749e-04	ci right 1.020708e-03	k: 2623	n:2670000
Cons ci ratio: 2.247032e-03	ci left: 5.320755e-01	ci right 5.332728e-01	k: 1422240	n:2670000
KS ci ratio: 1.243743e-01	ci left: 3.487760e-04	ci right 3.953900e-04	k: 992	n:2670000
LRRC37A2   2670000 perm   3490 sec   (765 perm/sec)   p_kst 3.715356e-04   p_cons 5.326742e-01   p_joint 9.823970e-04

Joint ci ratio: 7.632768e-02	ci left: 9.456742e-04	ci right 1.021082e-03	k: 2634	n:2680000
Cons ci ratio: 2.242782e-03	ci left: 5.320886e-01	ci right 5.332837e-01	k: 1427599	n:2680000
KS ci ratio: 1.239381e-01	ci left: 3.500054e-04	ci right 3.966076e-04	k: 999	n:2680000
LRRC37A2   2680000 perm   3513 sec   (763 perm/sec)   p_kst 3.727612e-04   p_cons 5.326862e-01   p_joint 9.828358e-04

Joint ci ratio: 7.624098e-02	ci left: 9.443466e-04	ci right 1.019560e-03	k: 2640	n:2690000
Cons ci ratio: 2.238718e-03	ci left: 5.320656e-01	ci right 5.332585e-01	k: 1432861	n:2690000
KS ci ratio: 1.235679e-01	ci left: 3.508657e-04	ci right 3.974327e-04	k: 1005	n:2690000
LRRC37A2   2690000 perm   3537 sec   (761 perm/sec)   p_kst 3.736059e-04   p_cons 5.326621e-01   p_joint 9.814126e-04

Joint ci ratio: 7.609705e-02	ci left: 9.444822e-04	ci right 1.019558e-03	k: 2650	n:2700000
Cons ci ratio: 2.234569e-03	ci left: 5.320665e-01	ci right 5.332571e-01	k: 1438187	n:2700000
KS ci ratio: 1.232010e-01	ci left: 3.517199e-04	ci right 3.982515e-04	k: 1011	n:2700000
LRRC37A2   2700000 perm   3562 sec   (758 perm/sec)   p_kst 3.744444e-04   p_cons 5.326619e-01   p_joint 9.814815e-04

Joint ci ratio: 7.598251e-02	ci left: 9.438929e-04	ci right 1.018804e-03	k: 2658	n:2710000
Cons ci ratio: 2.230301e-03	ci left: 5.320991e-01	ci right 5.332875e-01	k: 1443599	n:2710000
KS ci ratio: 1.228978e-01	ci left: 3.522102e-04	ci right 3.986837e-04	k: 1016	n:2710000
LRRC37A2   2710000 perm   3589 sec   (755 perm/sec)   p_kst 3.749077e-04   p_cons 5.326934e-01   p_joint 9.808118e-04

Joint ci ratio: 7.596835e-02	ci left: 9.407833e-04	ci right 1.015433e-03	k: 2659	n:2720000
Cons ci ratio: 2.226304e-03	ci left: 5.320763e-01	ci right 5.332626e-01	k: 1448861	n:2720000
KS ci ratio: 1.228375e-01	ci left: 3.512717e-04	ci right 3.975970e-04	k: 1017	n:2720000
LRRC37A2   2720000 perm   3614 sec   (753 perm/sec)   p_kst 3.738971e-04   p_cons 5.326695e-01   p_joint 9.775735e-04

Joint ci ratio: 7.581174e-02	ci left: 9.412901e-04	ci right 1.015819e-03	k: 2670	n:2730000
Cons ci ratio: 2.222290e-03	ci left: 5.320625e-01	ci right 5.332466e-01	k: 1454147	n:2730000
KS ci ratio: 1.226569e-01	ci left: 3.510501e-04	ci right 3.972732e-04	k: 1020	n:2730000
LRRC37A2   2730000 perm   3642 sec   (750 perm/sec)   p_kst 3.736264e-04   p_cons 5.326546e-01   p_joint 9.780220e-04

Joint ci ratio: 7.565610e-02	ci left: 9.417933e-04	ci right 1.016202e-03	k: 2681	n:2740000
Cons ci ratio: 2.218346e-03	ci left: 5.320378e-01	ci right 5.332197e-01	k: 1459403	n:2740000
KS ci ratio: 1.224771e-01	ci left: 3.508303e-04	ci right 3.969517e-04	k: 1023	n:2740000
LRRC37A2   2740000 perm   3668 sec   (747 perm/sec)   p_kst 3.733577e-04   p_cons 5.326288e-01   p_joint 9.784672e-04

Joint ci ratio: 7.554354e-02	ci left: 9.412227e-04	ci right 1.015471e-03	k: 2689	n:2750000
Cons ci ratio: 2.214379e-03	ci left: 5.320232e-01	ci right 5.332029e-01	k: 1464686	n:2750000
KS ci ratio: 1.223577e-01	ci left: 3.502595e-04	ci right 3.962578e-04	k: 1025	n:2750000
LRRC37A2   2750000 perm   3697 sec   (744 perm/sec)   p_kst 3.727273e-04   p_cons 5.326131e-01   p_joint 9.778182e-04

Joint ci ratio: 7.543148e-02	ci left: 9.406563e-04	ci right 1.014745e-03	k: 2697	n:2760000
Cons ci ratio: 2.210302e-03	ci left: 5.320380e-01	ci right 5.332156e-01	k: 1470050	n:2760000
KS ci ratio: 1.221199e-01	ci left: 3.503954e-04	ci right 3.963157e-04	k: 1029	n:2760000
LRRC37A2   2760000 perm   3731 sec   (740 perm/sec)   p_kst 3.728261e-04   p_cons 5.326268e-01   p_joint 9.771739e-04

Joint ci ratio: 7.527816e-02	ci left: 9.411567e-04	ci right 1.015128e-03	k: 2708	n:2770000
Cons ci ratio: 2.206310e-03	ci left: 5.320389e-01	ci right 5.332144e-01	k: 1475376	n:2770000
KS ci ratio: 1.218245e-01	ci left: 3.508804e-04	ci right 3.967450e-04	k: 1034	n:2770000
LRRC37A2   2770000 perm   3758 sec   (737 perm/sec)   p_kst 3.732852e-04   p_cons 5.326267e-01   p_joint 9.776173e-04

Joint ci ratio: 7.513960e-02	ci left: 9.413007e-04	ci right 1.015141e-03	k: 2718	n:2780000
Cons ci ratio: 2.202287e-03	ci left: 5.320514e-01	ci right 5.332248e-01	k: 1480734	n:2780000
KS ci ratio: 1.214145e-01	ci left: 3.520597e-04	ci right 3.979124e-04	k: 1041	n:2780000
LRRC37A2   2780000 perm   3784 sec   (735 perm/sec)   p_kst 3.744604e-04   p_cons 5.326381e-01   p_joint 9.776978e-04

Joint ci ratio: 7.505689e-02	ci left: 9.400370e-04	ci right 1.013693e-03	k: 2724	n:2790000
Cons ci ratio: 2.198273e-03	ci left: 5.320670e-01	ci right 5.332383e-01	k: 1486101	n:2790000
KS ci ratio: 1.214146e-01	ci left: 3.507978e-04	ci right 3.964862e-04	k: 1041	n:2790000
LRRC37A2   2790000 perm   3811 sec   (732 perm/sec)   p_kst 3.731183e-04   p_cons 5.326527e-01   p_joint 9.763441e-04

Joint ci ratio: 7.494698e-02	ci left: 9.394833e-04	ci right 1.012984e-03	k: 2732	n:2800000
Cons ci ratio: 2.194280e-03	ci left: 5.320825e-01	ci right 5.332517e-01	k: 1491468	n:2800000
KS ci ratio: 1.212402e-01	ci left: 3.505839e-04	ci right 3.961741e-04	k: 1044	n:2800000
LRRC37A2   2800000 perm   3836 sec   (730 perm/sec)   p_kst 3.728571e-04   p_cons 5.326671e-01   p_joint 9.757143e-04

Joint ci ratio: 7.478295e-02	ci left: 9.403305e-04	ci right 1.013729e-03	k: 2744	n:2810000
Cons ci ratio: 2.190329e-03	ci left: 5.320933e-01	ci right 5.332604e-01	k: 1496822	n:2810000
KS ci ratio: 1.209512e-01	ci left: 3.510617e-04	ci right 3.965975e-04	k: 1049	n:2810000
LRRC37A2   2810000 perm   3862 sec   (728 perm/sec)   p_kst 3.733096e-04   p_cons 5.326769e-01   p_joint 9.765125e-04

Joint ci ratio: 7.464710e-02	ci left: 9.404758e-04	ci right 1.013747e-03	k: 2754	n:2820000
Cons ci ratio: 2.186325e-03	ci left: 5.321210e-01	ci right 5.332860e-01	k: 1502224	n:2820000
KS ci ratio: 1.207788e-01	ci left: 3.508485e-04	ci right 3.962871e-04	k: 1052	n:2820000
LRRC37A2   2820000 perm   3889 sec   (725 perm/sec)   p_kst 3.730496e-04   p_cons 5.327035e-01   p_joint 9.765957e-04

Joint ci ratio: 7.448503e-02	ci left: 9.413138e-04	ci right 1.014484e-03	k: 2766	n:2830000
Cons ci ratio: 2.182485e-03	ci left: 5.321160e-01	ci right 5.332790e-01	k: 1507534	n:2830000
KS ci ratio: 1.204930e-01	ci left: 3.513222e-04	ci right 3.967068e-04	k: 1057	n:2830000
LRRC37A2   2830000 perm   3915 sec   (723 perm/sec)   p_kst 3.734982e-04   p_cons 5.326975e-01   p_joint 9.773852e-04

Joint ci ratio: 7.432401e-02	ci left: 9.421461e-04	ci right 1.015216e-03	k: 2778	n:2840000
Cons ci ratio: 2.178453e-03	ci left: 5.321597e-01	ci right 5.333205e-01	k: 1512982	n:2840000
KS ci ratio: 1.203226e-01	ci left: 3.511097e-04	ci right 3.963981e-04	k: 1060	n:2840000
LRRC37A2   2840000 perm   3943 sec   (720 perm/sec)   p_kst 3.732394e-04   p_cons 5.327401e-01   p_joint 9.781690e-04

Joint ci ratio: 7.408436e-02	ci left: 9.450389e-04	ci right 1.018086e-03	k: 2796	n:2850000
Cons ci ratio: 2.174561e-03	ci left: 5.321760e-01	ci right 5.333348e-01	k: 1518353	n:2850000
KS ci ratio: 1.200964e-01	ci left: 3.512390e-04	ci right 3.964529e-04	k: 1064	n:2850000
LRRC37A2   2850000 perm   3972 sec   (718 perm/sec)   p_kst 3.733333e-04   p_cons 5.327554e-01   p_joint 9.810526e-04

Joint ci ratio: 7.397866e-02	ci left: 9.444800e-04	ci right 1.017376e-03	k: 2804	n:2860000
Cons ci ratio: 2.170615e-03	ci left: 5.322093e-01	ci right 5.333661e-01	k: 1523773	n:2860000
KS ci ratio: 1.197595e-01	ci left: 3.520459e-04	ci right 3.972275e-04	k: 1070	n:2860000
LRRC37A2   2860000 perm   3999 sec   (715 perm/sec)   p_kst 3.741259e-04   p_cons 5.327878e-01   p_joint 9.804196e-04

Joint ci ratio: 7.391288e-02	ci left: 9.428991e-04	ci right 1.015605e-03	k: 2809	n:2870000
Cons ci ratio: 2.166782e-03	ci left: 5.322215e-01	ci right 5.333763e-01	k: 1529133	n:2870000
KS ci ratio: 1.193700e-01	ci left: 3.531853e-04	ci right 3.983554e-04	k: 1077	n:2870000
LRRC37A2   2870000 perm   4027 sec   (713 perm/sec)   p_kst 3.752613e-04   p_cons 5.327990e-01   p_joint 9.787456e-04

Joint ci ratio: 7.376862e-02	ci left: 9.433741e-04	ci right 1.015969e-03	k: 2820	n:2880000
Cons ci ratio: 2.163059e-03	ci left: 5.322128e-01	ci right 5.333656e-01	k: 1534433	n:2880000
KS ci ratio: 1.190941e-01	ci left: 3.536433e-04	ci right 3.987601e-04	k: 1082	n:2880000
LRRC37A2   2880000 perm   4054 sec   (710 perm/sec)   p_kst 3.756944e-04   p_cons 5.327892e-01   p_joint 9.791667e-04

Joint ci ratio: 7.374258e-02	ci left: 9.407890e-04	ci right 1.013158e-03	k: 2822	n:2890000
Cons ci ratio: 2.159348e-03	ci left: 5.322059e-01	ci right 5.333567e-01	k: 1539738	n:2890000
KS ci ratio: 1.190392e-01	ci left: 3.527553e-04	ci right 3.977366e-04	k: 1083	n:2890000
LRRC37A2   2890000 perm   4079 sec   (708 perm/sec)   p_kst 3.747405e-04   p_cons 5.327813e-01   p_joint 9.764706e-04

Joint ci ratio: 7.359931e-02	ci left: 9.412682e-04	ci right 1.013527e-03	k: 2833	n:2900000
Cons ci ratio: 2.155549e-03	ci left: 5.322235e-01	ci right 5.333723e-01	k: 1545114	n:2900000
KS ci ratio: 1.188748e-01	ci left: 3.525427e-04	ci right 3.974304e-04	k: 1086	n:2900000
LRRC37A2   2900000 perm   4105 sec   (706 perm/sec)   p_kst 3.744828e-04   p_cons 5.327979e-01   p_joint 9.768966e-04

Joint ci ratio: 7.348273e-02	ci left: 9.410695e-04	ci right 1.013194e-03	k: 2842	n:2910000
Cons ci ratio: 2.151897e-03	ci left: 5.322118e-01	ci right 5.333586e-01	k: 1550405	n:2910000
KS ci ratio: 1.187111e-01	ci left: 3.523315e-04	ci right 3.971262e-04	k: 1089	n:2910000
LRRC37A2   2910000 perm   4131 sec   (704 perm/sec)   p_kst 3.742268e-04   p_cons 5.327852e-01   p_joint 9.766323e-04

Joint ci ratio: 7.331526e-02	ci left: 9.422170e-04	ci right 1.014258e-03	k: 2855	n:2920000
Cons ci ratio: 2.148186e-03	ci left: 5.322183e-01	ci right 5.333631e-01	k: 1555749	n:2920000
KS ci ratio: 1.185481e-01	ci left: 3.521218e-04	ci right 3.968240e-04	k: 1092	n:2920000
LRRC37A2   2920000 perm   4163 sec   (701 perm/sec)   p_kst 3.739726e-04   p_cons 5.327908e-01   p_joint 9.777397e-04

Joint ci ratio: 7.317447e-02	ci left: 9.426867e-04	ci right 1.014619e-03	k: 2866	n:2930000
Cons ci ratio: 2.144492e-03	ci left: 5.322251e-01	ci right 5.333680e-01	k: 1561094	n:2930000
KS ci ratio: 1.181702e-01	ci left: 3.532383e-04	ci right 3.979294e-04	k: 1099	n:2930000
LRRC37A2   2930000 perm   4191 sec   (699 perm/sec)   p_kst 3.750853e-04   p_cons 5.327966e-01   p_joint 9.781570e-04

Joint ci ratio: 7.300909e-02	ci left: 9.438213e-04	ci right 1.015671e-03	k: 2879	n:2940000
Cons ci ratio: 2.140907e-03	ci left: 5.322108e-01	ci right 5.333517e-01	k: 1566377	n:2940000
KS ci ratio: 1.179026e-01	ci left: 3.536873e-04	ci right 3.983268e-04	k: 1104	n:2940000
LRRC37A2   2940000 perm   4219 sec   (697 perm/sec)   p_kst 3.755102e-04   p_cons 5.327813e-01   p_joint 9.792517e-04

Joint ci ratio: 7.292056e-02	ci left: 9.429515e-04	ci right 1.014644e-03	k: 2886	n:2950000
Cons ci ratio: 2.137387e-03	ci left: 5.321857e-01	ci right 5.333247e-01	k: 1571628	n:2950000
KS ci ratio: 1.177960e-01	ci left: 3.531463e-04	ci right 3.976745e-04	k: 1106	n:2950000
LRRC37A2   2950000 perm   4246 sec   (695 perm/sec)   p_kst 3.749153e-04   p_cons 5.327553e-01   p_joint 9.783051e-04

Joint ci ratio: 7.281976e-02	ci left: 9.424193e-04	ci right 1.013968e-03	k: 2894	n:2960000
Cons ci ratio: 2.133808e-03	ci left: 5.321787e-01	ci right 5.333158e-01	k: 1576932	n:2960000
KS ci ratio: 1.174781e-01	ci left: 3.539207e-04	ci right 3.984176e-04	k: 1112	n:2960000
LRRC37A2   2960000 perm   4272 sec   (693 perm/sec)   p_kst 3.756757e-04   p_cons 5.327473e-01   p_joint 9.777027e-04

Joint ci ratio: 7.270684e-02	ci left: 9.422213e-04	ci right 1.013640e-03	k: 2903	n:2970000
Cons ci ratio: 2.130148e-03	ci left: 5.321947e-01	ci right 5.333298e-01	k: 1582304	n:2970000
KS ci ratio: 1.172150e-01	ci left: 3.543631e-04	ci right 3.988090e-04	k: 1117	n:2970000
LRRC37A2   2970000 perm   4298 sec   (691 perm/sec)   p_kst 3.760943e-04   p_cons 5.327623e-01   p_joint 9.774411e-04

Joint ci ratio: 7.263189e-02	ci left: 9.410363e-04	ci right 1.012288e-03	k: 2909	n:2980000
Cons ci ratio: 2.126592e-03	ci left: 5.321907e-01	ci right 5.333240e-01	k: 1587617	n:2980000
KS ci ratio: 1.169538e-01	ci left: 3.548027e-04	ci right 3.991977e-04	k: 1122	n:2980000
LRRC37A2   2980000 perm   4326 sec   (689 perm/sec)   p_kst 3.765101e-04   p_cons 5.327574e-01   p_joint 9.761745e-04

Joint ci ratio: 7.247016e-02	ci left: 9.421580e-04	ci right 1.013329e-03	k: 2922	n:2990000
Cons ci ratio: 2.122978e-03	ci left: 5.322045e-01	ci right 5.333359e-01	k: 1592983	n:2990000
KS ci ratio: 1.166426e-01	ci left: 3.555641e-04	ci right 3.999279e-04	k: 1128	n:2990000
LRRC37A2   2990000 perm   4352 sec   (687 perm/sec)   p_kst 3.772575e-04   p_cons 5.327702e-01   p_joint 9.772575e-04

Joint ci ratio: 7.234651e-02	ci left: 9.422905e-04	ci right 1.013345e-03	k: 2932	n:3000000
Cons ci ratio: 2.119527e-03	ci left: 5.321842e-01	ci right 5.333137e-01	k: 1598247	n:3000000
KS ci ratio: 1.163851e-01	ci left: 3.559970e-04	ci right 4.003100e-04	k: 1133	n:3000000
LRRC37A2   3000000 perm   4381 sec   (685 perm/sec)   p_kst 3.776667e-04   p_cons 5.327490e-01   p_joint 9.773333e-04

Joint ci ratio: 7.221121e-02	ci left: 9.427484e-04	ci right 1.013699e-03	k: 2943	n:3010000
Cons ci ratio: 2.116023e-03	ci left: 5.321807e-01	ci right 5.333083e-01	k: 1603561	n:3010000
KS ci ratio: 1.162826e-01	ci left: 3.554594e-04	ci right 3.996639e-04	k: 1135	n:3010000
LRRC37A2   3010000 perm   4408 sec   (683 perm/sec)   p_kst 3.770764e-04   p_cons 5.327445e-01   p_joint 9.777409e-04

Joint ci ratio: 7.210109e-02	ci left: 9.425530e-04	ci right 1.013376e-03	k: 2952	n:3020000
Cons ci ratio: 2.112486e-03	ci left: 5.321888e-01	ci right 5.333145e-01	k: 1608910	n:3020000
KS ci ratio: 1.159767e-01	ci left: 3.562115e-04	ci right 4.003849e-04	k: 1141	n:3020000
LRRC37A2   3020000 perm   4436 sec   (681 perm/sec)   p_kst 3.778146e-04   p_cons 5.327517e-01   p_joint 9.774834e-04

Joint ci ratio: 7.202800e-02	ci left: 9.413868e-04	ci right 1.012048e-03	k: 2958	n:3030000
Cons ci ratio: 2.108994e-03	ci left: 5.321905e-01	ci right 5.333144e-01	k: 1614240	n:3030000
KS ci ratio: 1.158247e-01	ci left: 3.559972e-04	ci right 4.000823e-04	k: 1144	n:3030000
LRRC37A2   3030000 perm   4462 sec   (679 perm/sec)   p_kst 3.775578e-04   p_cons 5.327525e-01   p_joint 9.762376e-04

Joint ci ratio: 7.191872e-02	ci left: 9.411974e-04	ci right 1.011732e-03	k: 2967	n:3040000
Cons ci ratio: 2.105565e-03	ci left: 5.321814e-01	ci right 5.333034e-01	k: 1619537	n:3040000
KS ci ratio: 1.155726e-01	ci left: 3.564233e-04	ci right 4.004585e-04	k: 1149	n:3040000
LRRC37A2   3040000 perm   4488 sec   (677 perm/sec)   p_kst 3.779605e-04   p_cons 5.327424e-01   p_joint 9.759868e-04

Joint ci ratio: 7.180993e-02	ci left: 9.410093e-04	ci right 1.011419e-03	k: 2976	n:3050000
Cons ci ratio: 2.102087e-03	ci left: 5.321877e-01	ci right 5.333079e-01	k: 1624881	n:3050000
KS ci ratio: 1.154723e-01	ci left: 3.558915e-04	ci right 3.998202e-04	k: 1151	n:3050000
LRRC37A2   3050000 perm   4515 sec   (675 perm/sec)   p_kst 3.773770e-04   p_cons 5.327479e-01   p_joint 9.757377e-04

Joint ci ratio: 7.166561e-02	ci left: 9.417853e-04	ci right 1.012106e-03	k: 2988	n:3060000
Cons ci ratio: 2.098634e-03	ci left: 5.321924e-01	ci right 5.333108e-01	k: 1630220	n:3060000
KS ci ratio: 1.152723e-01	ci left: 3.559979e-04	ci right 3.998585e-04	k: 1155	n:3060000
LRRC37A2   3060000 perm   4541 sec   (674 perm/sec)   p_kst 3.774510e-04   p_cons 5.327516e-01   p_joint 9.764706e-04

Joint ci ratio: 7.152216e-02	ci left: 9.425565e-04	ci right 1.012788e-03	k: 3000	n:3070000
Cons ci ratio: 2.095192e-03	ci left: 5.321984e-01	ci right 5.333149e-01	k: 1635563	n:3070000
KS ci ratio: 1.150238e-01	ci left: 3.564201e-04	ci right 4.002316e-04	k: 1160	n:3070000
LRRC37A2   3070000 perm   4569 sec   (672 perm/sec)   p_kst 3.778502e-04   p_cons 5.327567e-01   p_joint 9.771987e-04

Joint ci ratio: 7.141516e-02	ci left: 9.423661e-04	ci right 1.012474e-03	k: 3009	n:3080000
Cons ci ratio: 2.091768e-03	ci left: 5.322040e-01	ci right 5.333187e-01	k: 1640905	n:3080000
KS ci ratio: 1.149249e-01	ci left: 3.558936e-04	ci right 3.996002e-04	k: 1162	n:3080000
LRRC37A2   3080000 perm   4596 sec   (670 perm/sec)   p_kst 3.772727e-04   p_cons 5.327614e-01   p_joint 9.769481e-04

Joint ci ratio: 7.129683e-02	ci left: 9.424948e-04	ci right 1.012491e-03	k: 3019	n:3090000
Cons ci ratio: 2.088493e-03	ci left: 5.321781e-01	ci right 5.332911e-01	k: 1646150	n:3090000
KS ci ratio: 1.147770e-01	ci left: 3.556848e-04	ci right 3.993057e-04	k: 1165	n:3090000
LRRC37A2   3090000 perm   4629 sec   (668 perm/sec)   p_kst 3.770227e-04   p_cons 5.327346e-01   p_joint 9.770227e-04

Joint ci ratio: 7.116732e-02	ci left: 9.429397e-04	ci right 1.012837e-03	k: 3030	n:3100000
Cons ci ratio: 2.085195e-03	ci left: 5.321615e-01	ci right 5.332726e-01	k: 1651423	n:3100000
KS ci ratio: 1.146787e-01	ci left: 3.551641e-04	ci right 3.986813e-04	k: 1167	n:3100000
LRRC37A2   3100000 perm   4665 sec   (665 perm/sec)   p_kst 3.764516e-04   p_cons 5.327171e-01   p_joint 9.774194e-04

Joint ci ratio: 7.105021e-02	ci left: 9.430660e-04	ci right 1.012852e-03	k: 3040	n:3110000
Cons ci ratio: 2.081845e-03	ci left: 5.321611e-01	ci right 5.332704e-01	k: 1656746	n:3110000
KS ci ratio: 1.143852e-01	ci left: 3.558961e-04	ci right 3.993839e-04	k: 1173	n:3110000
LRRC37A2   3110000 perm   4691 sec   (663 perm/sec)   p_kst 3.771704e-04   p_cons 5.327158e-01   p_joint 9.774920e-04

Joint ci ratio: 7.098026e-02	ci left: 9.419323e-04	ci right 1.011563e-03	k: 3046	n:3120000
Cons ci ratio: 2.078543e-03	ci left: 5.321532e-01	ci right 5.332608e-01	k: 1662046	n:3120000
KS ci ratio: 1.142394e-01	ci left: 3.556894e-04	ci right 3.990928e-04	k: 1176	n:3120000
LRRC37A2   3120000 perm   4719 sec   (661 perm/sec)   p_kst 3.769231e-04   p_cons 5.327071e-01   p_joint 9.762821e-04

Joint ci ratio: 7.087567e-02	ci left: 9.417473e-04	ci right 1.011258e-03	k: 3055	n:3130000
Cons ci ratio: 2.075177e-03	ci left: 5.321643e-01	ci right 5.332701e-01	k: 1667405	n:3130000
KS ci ratio: 1.140457e-01	ci left: 3.557945e-04	ci right 3.991322e-04	k: 1180	n:3130000
LRRC37A2   3130000 perm   4748 sec   (659 perm/sec)   p_kst 3.769968e-04   p_cons 5.327173e-01   p_joint 9.760383e-04

Joint ci ratio: 7.078311e-02	ci left: 9.412508e-04	ci right 1.010630e-03	k: 3063	n:3140000
Cons ci ratio: 2.071886e-03	ci left: 5.321613e-01	ci right 5.332654e-01	k: 1672720	n:3140000
KS ci ratio: 1.140458e-01	ci left: 3.546614e-04	ci right 3.978611e-04	k: 1180	n:3140000
LRRC37A2   3140000 perm   4777 sec   (657 perm/sec)   p_kst 3.757962e-04   p_cons 5.327134e-01   p_joint 9.754777e-04

Joint ci ratio: 7.065638e-02	ci left: 9.416930e-04	ci right 1.010976e-03	k: 3074	n:3150000
Cons ci ratio: 2.068622e-03	ci left: 5.321558e-01	ci right 5.332581e-01	k: 1678027	n:3150000
KS ci ratio: 1.137572e-01	ci left: 3.553860e-04	ci right 3.985570e-04	k: 1186	n:3150000
LRRC37A2   3150000 perm   4806 sec   (655 perm/sec)   p_kst 3.765079e-04   p_cons 5.327070e-01   p_joint 9.758730e-04

Joint ci ratio: 7.053032e-02	ci left: 9.421325e-04	ci right 1.011319e-03	k: 3085	n:3160000
Cons ci ratio: 2.065246e-03	ci left: 5.321807e-01	ci right 5.332812e-01	k: 1683430	n:3160000
KS ci ratio: 1.134707e-01	ci left: 3.561061e-04	ci right 3.992484e-04	k: 1192	n:3160000
LRRC37A2   3160000 perm   4834 sec   (654 perm/sec)   p_kst 3.772152e-04   p_cons 5.327310e-01   p_joint 9.762658e-04

Joint ci ratio: 7.039357e-02	ci left: 9.428793e-04	ci right 1.011981e-03	k: 3097	n:3170000
Cons ci ratio: 2.061993e-03	ci left: 5.321799e-01	ci right 5.332787e-01	k: 1688752	n:3170000
KS ci ratio: 1.132337e-01	ci left: 3.565153e-04	ci right 3.996110e-04	k: 1197	n:3170000
LRRC37A2   3170000 perm   4863 sec   (652 perm/sec)   p_kst 3.776025e-04   p_cons 5.327293e-01   p_joint 9.769716e-04

Joint ci ratio: 7.031420e-02	ci left: 9.420768e-04	ci right 1.011038e-03	k: 3104	n:3180000
Cons ci ratio: 2.058773e-03	ci left: 5.321747e-01	ci right 5.332718e-01	k: 1694060	n:3180000
KS ci ratio: 1.130922e-01	ci left: 3.563109e-04	ci right 3.993244e-04	k: 1200	n:3180000
LRRC37A2   3180000 perm   4891 sec   (650 perm/sec)   p_kst 3.773585e-04   p_cons 5.327233e-01   p_joint 9.761006e-04

Joint ci ratio: 7.018997e-02	ci left: 9.425113e-04	ci right 1.011378e-03	k: 3115	n:3190000
Cons ci ratio: 2.055590e-03	ci left: 5.321645e-01	ci right 5.332599e-01	k: 1699352	n:3190000
KS ci ratio: 1.129512e-01	ci left: 3.561078e-04	ci right 3.990396e-04	k: 1203	n:3190000
LRRC37A2   3190000 perm   4920 sec   (648 perm/sec)   p_kst 3.771160e-04   p_cons 5.327122e-01   p_joint 9.764890e-04

Joint ci ratio: 7.011129e-02	ci left: 9.417150e-04	ci right 1.010443e-03	k: 3122	n:3200000
Cons ci ratio: 2.052355e-03	ci left: 5.321703e-01	ci right 5.332640e-01	k: 1704695	n:3200000
KS ci ratio: 1.128107e-01	ci left: 3.559060e-04	ci right 3.987566e-04	k: 1206	n:3200000
LRRC37A2   3200000 perm   4949 sec   (647 perm/sec)   p_kst 3.768750e-04   p_cons 5.327172e-01   p_joint 9.756250e-04

Joint ci ratio: 6.997696e-02	ci left: 9.424542e-04	ci right 1.011099e-03	k: 3134	n:3210000
Cons ci ratio: 2.049229e-03	ci left: 5.321534e-01	ci right 5.332453e-01	k: 1709965	n:3210000
KS ci ratio: 1.127641e-01	ci left: 3.551000e-04	ci right 3.978347e-04	k: 1207	n:3210000
LRRC37A2   3210000 perm   4976 sec   (645 perm/sec)   p_kst 3.760125e-04   p_cons 5.326994e-01   p_joint 9.763240e-04

Joint ci ratio: 6.987674e-02	ci left: 9.422735e-04	ci right 1.010803e-03	k: 3143	n:3220000
Cons ci ratio: 2.046039e-03	ci left: 5.321555e-01	ci right 5.332457e-01	k: 1715296	n:3220000
KS ci ratio: 1.125778e-01	ci left: 3.552044e-04	ci right 3.978764e-04	k: 1211	n:3220000
LRRC37A2   3220000 perm   5004 sec   (643 perm/sec)   p_kst 3.760870e-04   p_cons 5.327006e-01   p_joint 9.760870e-04

Joint ci ratio: 6.975480e-02	ci left: 9.427024e-04	ci right 1.011139e-03	k: 3154	n:3230000
Cons ci ratio: 2.042759e-03	ci left: 5.321833e-01	ci right 5.332718e-01	k: 1720710	n:3230000
KS ci ratio: 1.123463e-01	ci left: 3.556091e-04	ci right 3.982361e-04	k: 1216	n:3230000
LRRC37A2   3230000 perm   5034 sec   (642 perm/sec)   p_kst 3.764706e-04   p_cons 5.327276e-01   p_joint 9.764706e-04

Joint ci ratio: 6.964452e-02	ci left: 9.428254e-04	ci right 1.011158e-03	k: 3164	n:3240000
Cons ci ratio: 2.039704e-03	ci left: 5.321596e-01	ci right 5.332465e-01	k: 1725958	n:3240000
KS ci ratio: 1.121621e-01	ci left: 3.557115e-04	ci right 3.982762e-04	k: 1220	n:3240000
LRRC37A2   3240000 perm   5062 sec   (640 perm/sec)   p_kst 3.765432e-04   p_cons 5.327031e-01   p_joint 9.765432e-04

Joint ci ratio: 6.955668e-02	ci left: 9.423431e-04	ci right 1.010551e-03	k: 3172	n:3250000
Cons ci ratio: 2.036531e-03	ci left: 5.321685e-01	ci right 5.332536e-01	k: 1731311	n:3250000
KS ci ratio: 1.119789e-01	ci left: 3.558133e-04	ci right 3.983160e-04	k: 1224	n:3250000
LRRC37A2   3250000 perm   5090 sec   (638 perm/sec)   p_kst 3.766154e-04   p_cons 5.327111e-01   p_joint 9.760000e-04

Joint ci ratio: 6.940369e-02	ci left: 9.436724e-04	ci right 1.011820e-03	k: 3186	n:3260000
Cons ci ratio: 2.033394e-03	ci left: 5.321720e-01	ci right 5.332555e-01	k: 1736647	n:3260000
KS ci ratio: 1.115245e-01	ci left: 3.577036e-04	ci right 4.002473e-04	k: 1234	n:3260000
LRRC37A2   3260000 perm   5119 sec   (637 perm/sec)   p_kst 3.785276e-04   p_cons 5.327138e-01   p_joint 9.773006e-04

Joint ci ratio: 6.930591e-02	ci left: 9.434911e-04	ci right 1.011526e-03	k: 3195	n:3270000
Cons ci ratio: 2.030288e-03	ci left: 5.321716e-01	ci right 5.332534e-01	k: 1741970	n:3270000
KS ci ratio: 1.112994e-01	ci left: 3.580961e-04	ci right 4.005949e-04	k: 1239	n:3270000
LRRC37A2   3270000 perm   5147 sec   (635 perm/sec)   p_kst 3.788991e-04   p_cons 5.327125e-01   p_joint 9.770642e-04

Joint ci ratio: 6.918694e-02	ci left: 9.439102e-04	ci right 1.011854e-03	k: 3206	n:3280000
Cons ci ratio: 2.027104e-03	ci left: 5.321937e-01	ci right 5.332739e-01	k: 1747367	n:3280000
KS ci ratio: 1.109865e-01	ci left: 3.590792e-04	ci right 4.015671e-04	k: 1246	n:3280000
LRRC37A2   3280000 perm   5176 sec   (634 perm/sec)   p_kst 3.798780e-04   p_cons 5.327338e-01   p_joint 9.774390e-04

Joint ci ratio: 6.912235e-02	ci left: 9.428333e-04	ci right 1.010634e-03	k: 3212	n:3290000
Cons ci ratio: 2.023978e-03	ci left: 5.322051e-01	ci right 5.332836e-01	k: 1752729	n:3290000
KS ci ratio: 1.108976e-01	ci left: 3.585788e-04	ci right 4.009713e-04	k: 1248	n:3290000
LRRC37A2   3290000 perm   5204 sec   (632 perm/sec)   p_kst 3.793313e-04   p_cons 5.327444e-01   p_joint 9.762918e-04

Joint ci ratio: 6.906868e-02	ci left: 9.414652e-04	ci right 1.009112e-03	k: 3217	n:3300000
Cons ci ratio: 2.020839e-03	ci left: 5.322230e-01	ci right 5.332999e-01	k: 1758113	n:3300000
KS ci ratio: 1.108090e-01	ci left: 3.580815e-04	ci right 4.003791e-04	k: 1250	n:3300000
LRRC37A2   3300000 perm   5234 sec   (631 perm/sec)   p_kst 3.787879e-04   p_cons 5.327615e-01   p_joint 9.748485e-04

Joint ci ratio: 6.899371e-02	ci left: 9.406992e-04	ci right 1.008215e-03	k: 3224	n:3310000
Cons ci ratio: 2.017887e-03	ci left: 5.321986e-01	ci right 5.332739e-01	k: 1763357	n:3310000
KS ci ratio: 1.105002e-01	ci left: 3.590559e-04	ci right 4.013427e-04	k: 1257	n:3310000
LRRC37A2   3310000 perm   5262 sec   (629 perm/sec)   p_kst 3.797583e-04   p_cons 5.327363e-01   p_joint 9.740181e-04

Joint ci ratio: 6.894033e-02	ci left: 9.393458e-04	ci right 1.006710e-03	k: 3229	n:3320000
Cons ci ratio: 2.014789e-03	ci left: 5.322134e-01	ci right 5.332871e-01	k: 1768731	n:3320000
KS ci ratio: 1.103250e-01	ci left: 3.591460e-04	ci right 4.013720e-04	k: 1261	n:3320000
LRRC37A2   3320000 perm   5291 sec   (627 perm/sec)   p_kst 3.798193e-04   p_cons 5.327503e-01   p_joint 9.725904e-04

Joint ci ratio: 6.883386e-02	ci left: 9.394762e-04	ci right 1.006742e-03	k: 3239	n:3330000
Cons ci ratio: 2.011784e-03	ci left: 5.322087e-01	ci right 5.332807e-01	k: 1774040	n:3330000
KS ci ratio: 1.101070e-01	ci left: 3.595276e-04	ci right 4.017095e-04	k: 1266	n:3330000
LRRC37A2   3330000 perm   5321 sec   (626 perm/sec)   p_kst 3.801802e-04   p_cons 5.327447e-01   p_joint 9.726727e-04

Joint ci ratio: 6.872788e-02	ci left: 9.396059e-04	ci right 1.006773e-03	k: 3249	n:3340000
Cons ci ratio: 2.008790e-03	ci left: 5.322046e-01	ci right 5.332750e-01	k: 1779351	n:3340000
KS ci ratio: 1.099336e-01	ci left: 3.596158e-04	ci right 4.017373e-04	k: 1270	n:3340000
LRRC37A2   3340000 perm   5350 sec   (624 perm/sec)   p_kst 3.802395e-04   p_cons 5.327398e-01   p_joint 9.727545e-04

Joint ci ratio: 6.859080e-02	ci left: 9.406151e-04	ci right 1.007715e-03	k: 3262	n:3350000
Cons ci ratio: 2.005840e-03	ci left: 5.321927e-01	ci right 5.332616e-01	k: 1784636	n:3350000
KS ci ratio: 1.096321e-01	ci left: 3.605745e-04	ci right 4.026850e-04	k: 1277	n:3350000
LRRC37A2   3350000 perm   5379 sec   (623 perm/sec)   p_kst 3.811940e-04   p_cons 5.327272e-01   p_joint 9.737313e-04

Joint ci ratio: 6.847546e-02	ci left: 9.410334e-04	ci right 1.008046e-03	k: 3273	n:3360000
Cons ci ratio: 2.002826e-03	ci left: 5.322003e-01	ci right 5.332675e-01	k: 1789986	n:3360000
KS ci ratio: 1.094609e-01	ci left: 3.606592e-04	ci right 4.027096e-04	k: 1281	n:3360000
LRRC37A2   3360000 perm   5408 sec   (621 perm/sec)   p_kst 3.812500e-04   p_cons 5.327339e-01   p_joint 9.741071e-04

Joint ci ratio: 6.839197e-02	ci left: 9.405743e-04	ci right 1.007469e-03	k: 3281	n:3370000
Cons ci ratio: 1.999848e-03	ci left: 5.322022e-01	ci right 5.332678e-01	k: 1795317	n:3370000
KS ci ratio: 1.092056e-01	ci left: 3.613208e-04	ci right 4.033437e-04	k: 1287	n:3370000
LRRC37A2   3370000 perm   5438 sec   (620 perm/sec)   p_kst 3.818991e-04   p_cons 5.327350e-01   p_joint 9.735905e-04

Joint ci ratio: 6.831918e-02	ci left: 9.398271e-04	ci right 1.006595e-03	k: 3288	n:3380000
Cons ci ratio: 1.996897e-03	ci left: 5.322005e-01	ci right 5.332646e-01	k: 1800636	n:3380000
KS ci ratio: 1.089943e-01	ci left: 3.616907e-04	ci right 4.036700e-04	k: 1292	n:3380000
LRRC37A2   3380000 perm   5468 sec   (618 perm/sec)   p_kst 3.822485e-04   p_cons 5.327325e-01   p_joint 9.727811e-04

Joint ci ratio: 6.818453e-02	ci left: 9.408241e-04	ci right 1.007526e-03	k: 3301	n:3390000
Cons ci ratio: 1.994045e-03	ci left: 5.321776e-01	ci right 5.332401e-01	k: 1805883	n:3390000
KS ci ratio: 1.089101e-01	ci left: 3.611976e-04	ci right 4.030853e-04	k: 1294	n:3390000
LRRC37A2   3390000 perm   5498 sec   (617 perm/sec)   p_kst 3.817109e-04   p_cons 5.327088e-01   p_joint 9.737463e-04

Joint ci ratio: 6.814333e-02	ci left: 9.392134e-04	ci right 1.005759e-03	k: 3305	n:3400000
Cons ci ratio: 1.991172e-03	ci left: 5.321627e-01	ci right 5.332237e-01	k: 1811157	n:3400000
KS ci ratio: 1.087423e-01	ci left: 3.612798e-04	ci right 4.031082e-04	k: 1298	n:3400000
LRRC37A2   3400000 perm   5527 sec   (615 perm/sec)   p_kst 3.817647e-04   p_cons 5.326932e-01   p_joint 9.720588e-04

Joint ci ratio: 6.807133e-02	ci left: 9.384769e-04	ci right 1.004897e-03	k: 3312	n:3410000
Cons ci ratio: 1.988191e-03	ci left: 5.321785e-01	ci right 5.332379e-01	k: 1816535	n:3410000
KS ci ratio: 1.086587e-01	ci left: 3.607908e-04	ci right 4.025286e-04	k: 1300	n:3410000
LRRC37A2   3410000 perm   5556 sec   (614 perm/sec)   p_kst 3.812317e-04   p_cons 5.327082e-01   p_joint 9.712610e-04

Joint ci ratio: 6.789728e-02	ci left: 9.406191e-04	ci right 1.007014e-03	k: 3329	n:3420000
Cons ci ratio: 1.985338e-03	ci left: 5.321652e-01	ci right 5.332230e-01	k: 1821814	n:3420000
KS ci ratio: 1.084920e-01	ci left: 3.608737e-04	ci right 4.025529e-04	k: 1304	n:3420000
LRRC37A2   3420000 perm   5585 sec   (612 perm/sec)   p_kst 3.812865e-04   p_cons 5.326942e-01   p_joint 9.733918e-04

Joint ci ratio: 6.776510e-02	ci left: 9.416026e-04	ci right 1.007933e-03	k: 3342	n:3430000
Cons ci ratio: 1.982330e-03	ci left: 5.321940e-01	ci right 5.332503e-01	k: 1827237	n:3430000
KS ci ratio: 1.082848e-01	ci left: 3.612398e-04	ci right 4.028765e-04	k: 1309	n:3430000
LRRC37A2   3430000 perm   5614 sec   (611 perm/sec)   p_kst 3.816327e-04   p_cons 5.327222e-01   p_joint 9.743440e-04

Joint ci ratio: 6.766397e-02	ci left: 9.417232e-04	ci right 1.007959e-03	k: 3352	n:3440000
Cons ci ratio: 1.979491e-03	ci left: 5.321836e-01	ci right 5.332384e-01	k: 1832526	n:3440000
KS ci ratio: 1.081610e-01	ci left: 3.610382e-04	ci right 4.026011e-04	k: 1312	n:3440000
LRRC37A2   3440000 perm   5644 sec   (610 perm/sec)   p_kst 3.813953e-04   p_cons 5.327110e-01   p_joint 9.744186e-04

Joint ci ratio: 6.753315e-02	ci left: 9.426980e-04	ci right 1.008869e-03	k: 3365	n:3450000
Cons ci ratio: 1.976584e-03	ci left: 5.321936e-01	ci right 5.332469e-01	k: 1837885	n:3450000
KS ci ratio: 1.077921e-01	ci left: 3.625300e-04	ci right 4.041132e-04	k: 1321	n:3450000
LRRC37A2   3450000 perm   5673 sec   (608 perm/sec)   p_kst 3.828986e-04   p_cons 5.327203e-01   p_joint 9.753623e-04

Joint ci ratio: 6.745305e-02	ci left: 9.422465e-04	ci right 1.008304e-03	k: 3373	n:3460000
Cons ci ratio: 1.973706e-03	ci left: 5.321993e-01	ci right 5.332510e-01	k: 1843229	n:3460000
KS ci ratio: 1.075888e-01	ci left: 3.628884e-04	ci right 4.044292e-04	k: 1326	n:3460000
LRRC37A2   3460000 perm   5704 sec   (607 perm/sec)   p_kst 3.832370e-04   p_cons 5.327251e-01   p_joint 9.748555e-04

Joint ci ratio: 6.740317e-02	ci left: 9.409477e-04	ci right 1.006864e-03	k: 3378	n:3470000
Cons ci ratio: 1.970909e-03	ci left: 5.321876e-01	ci right 5.332378e-01	k: 1848513	n:3470000
KS ci ratio: 1.074271e-01	ci left: 3.629643e-04	ci right 4.044474e-04	k: 1330	n:3470000
LRRC37A2   3470000 perm   5735 sec   (605 perm/sec)   p_kst 3.832853e-04   p_cons 5.327127e-01   p_joint 9.734870e-04

Joint ci ratio: 6.728378e-02	ci left: 9.416341e-04	ci right 1.007477e-03	k: 3390	n:3480000
Cons ci ratio: 1.968088e-03	ci left: 5.321851e-01	ci right 5.332338e-01	k: 1853829	n:3480000
KS ci ratio: 1.073868e-01	ci left: 3.622009e-04	ci right 4.035803e-04	k: 1331	n:3480000
LRRC37A2   3480000 perm   5765 sec   (604 perm/sec)   p_kst 3.824713e-04   p_cons 5.327095e-01   p_joint 9.741379e-04

Joint ci ratio: 6.725411e-02	ci left: 9.397811e-04	ci right 1.005464e-03	k: 3393	n:3490000
Cons ci ratio: 1.965223e-03	ci left: 5.321970e-01	ci right 5.332442e-01	k: 1859195	n:3490000
KS ci ratio: 1.072259e-01	ci left: 3.622785e-04	ci right 4.036008e-04	k: 1335	n:3490000
LRRC37A2   3490000 perm   5795 sec   (602 perm/sec)   p_kst 3.825215e-04   p_cons 5.327206e-01   p_joint 9.722063e-04

Joint ci ratio: 6.710593e-02	ci left: 9.413097e-04	ci right 1.006949e-03	k: 3408	n:3500000
Cons ci ratio: 1.962358e-03	ci left: 5.322117e-01	ci right 5.332574e-01	k: 1864571	n:3500000
KS ci ratio: 1.069859e-01	ci left: 3.629118e-04	ci right 4.042079e-04	k: 1341	n:3500000
LRRC37A2   3500000 perm   5826 sec   (601 perm/sec)   p_kst 3.831429e-04   p_cons 5.327346e-01   p_joint 9.737143e-04

Joint ci ratio: 6.702735e-02	ci left: 9.408689e-04	ci right 1.006398e-03	k: 3416	n:3510000
Cons ci ratio: 1.959409e-03	ci left: 5.322511e-01	ci right 5.332953e-01	k: 1870034	n:3510000
KS ci ratio: 1.067871e-01	ci left: 3.632643e-04	ci right 4.045188e-04	k: 1346	n:3510000
LRRC37A2   3510000 perm   5856 sec   (599 perm/sec)   p_kst 3.834758e-04   p_cons 5.327732e-01   p_joint 9.732194e-04

Joint ci ratio: 6.694904e-02	ci left: 9.404307e-04	ci right 1.005849e-03	k: 3424	n:3520000
Cons ci ratio: 1.956642e-03	ci left: 5.322471e-01	ci right 5.332898e-01	k: 1875345	n:3520000
KS ci ratio: 1.066684e-01	ci left: 3.630618e-04	ci right 4.042446e-04	k: 1349	n:3520000
LRRC37A2   3520000 perm   5888 sec   (598 perm/sec)   p_kst 3.832386e-04   p_cons 5.327685e-01   p_joint 9.727273e-04

Joint ci ratio: 6.682231e-02	ci left: 9.413877e-04	ci right 1.006744e-03	k: 3437	n:3530000
Cons ci ratio: 1.953909e-03	ci left: 5.322374e-01	ci right 5.332787e-01	k: 1880636	n:3530000
KS ci ratio: 1.065501e-01	ci left: 3.628605e-04	ci right 4.039720e-04	k: 1352	n:3530000
LRRC37A2   3530000 perm   5917 sec   (597 perm/sec)   p_kst 3.830028e-04   p_cons 5.327581e-01   p_joint 9.736544e-04

Joint ci ratio: 6.674472e-02	ci left: 9.409505e-04	ci right 1.006198e-03	k: 3445	n:3540000
Cons ci ratio: 1.951136e-03	ci left: 5.322411e-01	ci right 5.332809e-01	k: 1885974	n:3540000
KS ci ratio: 1.062755e-01	ci left: 3.637602e-04	ci right 4.048608e-04	k: 1359	n:3540000
LRRC37A2   3540000 perm   5948 sec   (595 perm/sec)   p_kst 3.838983e-04   p_cons 5.327610e-01   p_joint 9.731638e-04

Joint ci ratio: 6.668672e-02	ci left: 9.399619e-04	ci right 1.005082e-03	k: 3451	n:3550000
Cons ci ratio: 1.948375e-03	ci left: 5.322448e-01	ci right 5.332831e-01	k: 1891312	n:3550000
KS ci ratio: 1.061195e-01	ci left: 3.638324e-04	ci right 4.048770e-04	k: 1363	n:3550000
LRRC37A2   3550000 perm   5978 sec   (594 perm/sec)   p_kst 3.839437e-04   p_cons 5.327639e-01   p_joint 9.721127e-04

Joint ci ratio: 6.663852e-02	ci left: 9.387026e-04	ci right 1.003686e-03	k: 3456	n:3560000
Cons ci ratio: 1.945563e-03	ci left: 5.322641e-01	ci right 5.333010e-01	k: 1896706	n:3560000
KS ci ratio: 1.060419e-01	ci left: 3.633573e-04	ci right 4.043165e-04	k: 1365	n:3560000
LRRC37A2   3560000 perm   6009 sec   (592 perm/sec)   p_kst 3.834270e-04   p_cons 5.327826e-01   p_joint 9.707865e-04

Joint ci ratio: 6.648478e-02	ci left: 9.404804e-04	ci right 1.005431e-03	k: 3472	n:3570000
Cons ci ratio: 1.942849e-03	ci left: 5.322618e-01	ci right 5.332972e-01	k: 1902023	n:3570000
KS ci ratio: 1.057326e-01	ci left: 3.645210e-04	ci right 4.054841e-04	k: 1373	n:3570000
LRRC37A2   3570000 perm   6040 sec   (591 perm/sec)   p_kst 3.845938e-04   p_cons 5.327796e-01   p_joint 9.725490e-04

Joint ci ratio: 6.639881e-02	ci left: 9.403256e-04	ci right 1.005179e-03	k: 3481	n:3580000
Cons ci ratio: 1.940095e-03	ci left: 5.322724e-01	ci right 5.333063e-01	k: 1907386	n:3580000
KS ci ratio: 1.056558e-01	ci left: 3.640467e-04	ci right 4.049249e-04	k: 1375	n:3580000
LRRC37A2   3580000 perm   6069 sec   (590 perm/sec)   p_kst 3.840782e-04   p_cons 5.327894e-01   p_joint 9.723464e-04

Joint ci ratio: 6.633220e-02	ci left: 9.396238e-04	ci right 1.004361e-03	k: 3488	n:3590000
Cons ci ratio: 1.937414e-03	ci left: 5.322673e-01	ci right 5.332998e-01	k: 1912693	n:3590000
KS ci ratio: 1.055026e-01	ci left: 3.641174e-04	ci right 4.049406e-04	k: 1379	n:3590000
LRRC37A2   3590000 perm   6099 sec   (589 perm/sec)   p_kst 3.841226e-04   p_cons 5.327836e-01   p_joint 9.715877e-04

Joint ci ratio: 6.625630e-02	ci left: 9.391991e-04	ci right 1.003830e-03	k: 3496	n:3600000
Cons ci ratio: 1.934738e-03	ci left: 5.322636e-01	ci right 5.332947e-01	k: 1918005	n:3600000
KS ci ratio: 1.052739e-01	ci left: 3.647287e-04	ci right 4.055263e-04	k: 1385	n:3600000
LRRC37A2   3600000 perm   6131 sec   (587 perm/sec)   p_kst 3.847222e-04   p_cons 5.327792e-01   p_joint 9.711111e-04

Joint ci ratio: 6.612403e-02	ci left: 9.404114e-04	ci right 1.004992e-03	k: 3510	n:3610000
Cons ci ratio: 1.932050e-03	ci left: 5.322661e-01	ci right 5.332957e-01	k: 1923339	n:3610000
KS ci ratio: 1.051223e-01	ci left: 3.647973e-04	ci right 4.055402e-04	k: 1389	n:3610000
LRRC37A2   3610000 perm   6162 sec   (586 perm/sec)   p_kst 3.847645e-04   p_cons 5.327809e-01   p_joint 9.722992e-04

Joint ci ratio: 6.604884e-02	ci left: 9.399870e-04	ci right 1.004462e-03	k: 3518	n:3620000
Cons ci ratio: 1.929385e-03	ci left: 5.322652e-01	ci right 5.332934e-01	k: 1928661	n:3620000
KS ci ratio: 1.050091e-01	ci left: 3.645965e-04	ci right 4.052704e-04	k: 1392	n:3620000
LRRC37A2   3620000 perm   6192 sec   (585 perm/sec)   p_kst 3.845304e-04   p_cons 5.327793e-01   p_joint 9.718232e-04

Joint ci ratio: 6.597390e-02	ci left: 9.395650e-04	ci right 1.003935e-03	k: 3526	n:3630000
Cons ci ratio: 1.926690e-03	ci left: 5.322753e-01	ci right 5.333021e-01	k: 1934023	n:3630000
KS ci ratio: 1.048211e-01	ci left: 3.649334e-04	ci right 4.055675e-04	k: 1397	n:3630000
LRRC37A2   3630000 perm   6224 sec   (583 perm/sec)   p_kst 3.848485e-04   p_cons 5.327887e-01   p_joint 9.713499e-04

Joint ci ratio: 6.586194e-02	ci left: 9.402261e-04	ci right 1.004528e-03	k: 3538	n:3640000
Cons ci ratio: 1.924093e-03	ci left: 5.322626e-01	ci right 5.332879e-01	k: 1939302	n:3640000
KS ci ratio: 1.047088e-01	ci left: 3.647334e-04	ci right 4.052991e-04	k: 1400	n:3640000
LRRC37A2   3640000 perm   6255 sec   (582 perm/sec)   p_kst 3.846154e-04   p_cons 5.327753e-01   p_joint 9.719780e-04

Joint ci ratio: 6.580621e-02	ci left: 9.392669e-04	ci right 1.003447e-03	k: 3544	n:3650000
Cons ci ratio: 1.921489e-03	ci left: 5.322546e-01	ci right 5.332785e-01	k: 1944598	n:3650000
KS ci ratio: 1.045969e-01	ci left: 3.645345e-04	ci right 4.050321e-04	k: 1403	n:3650000
LRRC37A2   3650000 perm   6286 sec   (581 perm/sec)   p_kst 3.843836e-04   p_cons 5.327666e-01   p_joint 9.709589e-04

Joint ci ratio: 6.567661e-02	ci left: 9.404629e-04	ci right 1.004593e-03	k: 3558	n:3660000
Cons ci ratio: 1.918866e-03	ci left: 5.322543e-01	ci right 5.332768e-01	k: 1949922	n:3660000
KS ci ratio: 1.043741e-01	ci left: 3.651350e-04	ci right 4.056076e-04	k: 1409	n:3660000
LRRC37A2   3660000 perm   6317 sec   (579 perm/sec)   p_kst 3.849727e-04   p_cons 5.327656e-01   p_joint 9.721311e-04

Joint ci ratio: 6.562136e-02	ci left: 9.395084e-04	ci right 1.003518e-03	k: 3564	n:3670000
Cons ci ratio: 1.916265e-03	ci left: 5.322512e-01	ci right 5.332724e-01	k: 1955236	n:3670000
KS ci ratio: 1.043002e-01	ci left: 3.646709e-04	ci right 4.050616e-04	k: 1411	n:3670000
LRRC37A2   3670000 perm   6348 sec   (578 perm/sec)   p_kst 3.844687e-04   p_cons 5.327619e-01   p_joint 9.711172e-04

Joint ci ratio: 6.556624e-02	ci left: 9.385590e-04	ci right 1.002448e-03	k: 3570	n:3680000
Cons ci ratio: 1.913730e-03	ci left: 5.322336e-01	ci right 5.332533e-01	k: 1960496	n:3680000
KS ci ratio: 1.041896e-01	ci left: 3.644739e-04	ci right 4.047973e-04	k: 1414	n:3680000
LRRC37A2   3680000 perm   6379 sec   (577 perm/sec)   p_kst 3.842391e-04   p_cons 5.327435e-01   p_joint 9.701087e-04

Joint ci ratio: 6.547462e-02	ci left: 9.386811e-04	ci right 1.002486e-03	k: 3580	n:3690000
Cons ci ratio: 1.911211e-03	ci left: 5.322144e-01	ci right 5.332328e-01	k: 1965750	n:3690000
KS ci ratio: 1.041160e-01	ci left: 3.640140e-04	ci right 4.042564e-04	k: 1416	n:3690000
LRRC37A2   3690000 perm   6410 sec   (576 perm/sec)   p_kst 3.837398e-04   p_cons 5.327236e-01   p_joint 9.701897e-04

Joint ci ratio: 6.542900e-02	ci left: 9.374734e-04	ci right 1.001150e-03	k: 3585	n:3700000
Cons ci ratio: 1.908483e-03	ci left: 5.322525e-01	ci right 5.332696e-01	k: 1971216	n:3700000
KS ci ratio: 1.040794e-01	ci left: 3.632934e-04	ci right 4.034412e-04	k: 1417	n:3700000
LRRC37A2   3700000 perm   6442 sec   (574 perm/sec)   p_kst 3.829730e-04   p_cons 5.327611e-01   p_joint 9.689189e-04

Joint ci ratio: 6.536526e-02	ci left: 9.368024e-04	ci right 1.000369e-03	k: 3592	n:3710000
Cons ci ratio: 1.905929e-03	ci left: 5.322479e-01	ci right 5.332636e-01	k: 1976524	n:3710000
KS ci ratio: 1.039329e-01	ci left: 3.633643e-04	ci right 4.034599e-04	k: 1421	n:3710000
LRRC37A2   3710000 perm   6473 sec   (573 perm/sec)   p_kst 3.830189e-04   p_cons 5.327558e-01   p_joint 9.681941e-04

Joint ci ratio: 6.531078e-02	ci left: 9.358707e-04	ci right 9.993188e-04	k: 3598	n:3720000
Cons ci ratio: 1.903360e-03	ci left: 5.322501e-01	ci right 5.332644e-01	k: 1981857	n:3720000
KS ci ratio: 1.038964e-01	ci left: 3.626494e-04	ci right 4.026512e-04	k: 1422	n:3720000
LRRC37A2   3720000 perm   6504 sec   (572 perm/sec)   p_kst 3.822581e-04   p_cons 5.327573e-01   p_joint 9.672043e-04

Joint ci ratio: 6.518409e-02	ci left: 9.370538e-04	ci right 1.000454e-03	k: 3612	n:3730000
Cons ci ratio: 1.900864e-03	ci left: 5.322359e-01	ci right 5.332488e-01	k: 1987129	n:3730000
KS ci ratio: 1.035693e-01	ci left: 3.640274e-04	ci right 4.040471e-04	k: 1431	n:3730000
LRRC37A2   3730000 perm   6537 sec   (571 perm/sec)   p_kst 3.836461e-04   p_cons 5.327424e-01   p_joint 9.683646e-04

Joint ci ratio: 6.516612e-02	ci left: 9.350743e-04	ci right 9.983227e-04	k: 3614	n:3740000
Cons ci ratio: 1.898348e-03	ci left: 5.322295e-01	ci right 5.332411e-01	k: 1992430	n:3740000
KS ci ratio: 1.035332e-01	ci left: 3.633145e-04	ci right 4.032411e-04	k: 1432	n:3740000
LRRC37A2   3740000 perm   6569 sec   (569 perm/sec)   p_kst 3.828877e-04   p_cons 5.327353e-01   p_joint 9.663102e-04

Joint ci ratio: 6.505821e-02	ci left: 9.357287e-04	ci right 9.989126e-04	k: 3626	n:3750000
Cons ci ratio: 1.895779e-03	ci left: 5.322397e-01	ci right 5.332499e-01	k: 1997793	n:3750000
KS ci ratio: 1.035333e-01	ci left: 3.623457e-04	ci right 4.021658e-04	k: 1432	n:3750000
LRRC37A2   3750000 perm   6600 sec   (568 perm/sec)   p_kst 3.818667e-04   p_cons 5.327448e-01   p_joint 9.669333e-04

Joint ci ratio: 6.494190e-02	ci left: 9.366413e-04	ci right 9.997696e-04	k: 3639	n:3760000
Cons ci ratio: 1.893255e-03	ci left: 5.322408e-01	ci right 5.332496e-01	k: 2003122	n:3760000
KS ci ratio: 1.032813e-01	ci left: 3.631955e-04	ci right 4.030060e-04	k: 1439	n:3760000
LRRC37A2   3760000 perm   6631 sec   (567 perm/sec)   p_kst 3.827128e-04   p_cons 5.327452e-01   p_joint 9.678191e-04

Joint ci ratio: 6.487957e-02	ci left: 9.359835e-04	ci right 9.990046e-04	k: 3646	n:3770000
Cons ci ratio: 1.890783e-03	ci left: 5.322307e-01	ci right 5.332382e-01	k: 2008409	n:3770000
KS ci ratio: 1.031381e-01	ci left: 3.632658e-04	ci right 4.030254e-04	k: 1443	n:3770000
LRRC37A2   3770000 perm   6663 sec   (566 perm/sec)   p_kst 3.827586e-04   p_cons 5.327345e-01   p_joint 9.671088e-04

Joint ci ratio: 6.483518e-02	ci left: 9.348086e-04	ci right 9.977059e-04	k: 3651	n:3780000
Cons ci ratio: 1.888332e-03	ci left: 5.322178e-01	ci right 5.332240e-01	k: 2013685	n:3780000
KS ci ratio: 1.030668e-01	ci left: 3.628202e-04	ci right 4.025020e-04	k: 1445	n:3780000
LRRC37A2   3780000 perm   6694 sec   (565 perm/sec)   p_kst 3.822751e-04   p_cons 5.327209e-01   p_joint 9.658730e-04

Joint ci ratio: 6.474659e-02	ci left: 9.349379e-04	ci right 9.977547e-04	k: 3661	n:3790000
Cons ci ratio: 1.885776e-03	ci left: 5.322350e-01	ci right 5.332399e-01	k: 2019075	n:3790000
KS ci ratio: 1.028890e-01	ci left: 3.631482e-04	ci right 4.027932e-04	k: 1450	n:3790000
LRRC37A2   3790000 perm   6726 sec   (564 perm/sec)   p_kst 3.825858e-04   p_cons 5.327375e-01   p_joint 9.659631e-04

Joint ci ratio: 6.463195e-02	ci left: 9.358432e-04	ci right 9.986054e-04	k: 3674	n:3800000
Cons ci ratio: 1.883293e-03	ci left: 5.322358e-01	ci right 5.332394e-01	k: 2024403	n:3800000
KS ci ratio: 1.027122e-01	ci left: 3.634745e-04	ci right 4.030828e-04	k: 1455	n:3800000
LRRC37A2   3800000 perm   6758 sec   (562 perm/sec)   p_kst 3.828947e-04   p_cons 5.327376e-01   p_joint 9.668421e-04

Joint ci ratio: 6.455296e-02	ci left: 9.357110e-04	ci right 9.983847e-04	k: 3683	n:3810000
Cons ci ratio: 1.880827e-03	ci left: 5.322346e-01	ci right 5.332368e-01	k: 2029723	n:3810000
KS ci ratio: 1.024311e-01	ci left: 3.645664e-04	ci right 4.041784e-04	k: 1463	n:3810000
LRRC37A2   3810000 perm   6789 sec   (561 perm/sec)   p_kst 3.839895e-04   p_cons 5.327357e-01   p_joint 9.666667e-04

Joint ci ratio: 6.446552e-02	ci left: 9.358371e-04	ci right 9.984312e-04	k: 3693	n:3820000
Cons ci ratio: 1.878326e-03	ci left: 5.322451e-01	ci right 5.332460e-01	k: 2035088	n:3820000
KS ci ratio: 1.023613e-01	ci left: 3.641222e-04	ci right 4.036573e-04	k: 1465	n:3820000
LRRC37A2   3820000 perm   6821 sec   (560 perm/sec)   p_kst 3.835079e-04   p_cons 5.327455e-01   p_joint 9.667539e-04

Joint ci ratio: 6.432631e-02	ci left: 9.375040e-04	ci right 1.000069e-03	k: 3709	n:3830000
Cons ci ratio: 1.875882e-03	ci left: 5.322433e-01	ci right 5.332429e-01	k: 2040406	n:3830000
KS ci ratio: 1.022567e-01	ci left: 3.639347e-04	ci right 4.034067e-04	k: 1468	n:3830000
LRRC37A2   3830000 perm   6853 sec   (559 perm/sec)   p_kst 3.832898e-04   p_cons 5.327431e-01   p_joint 9.684073e-04

Joint ci ratio: 6.419661e-02	ci left: 9.389060e-04	ci right 1.001434e-03	k: 3724	n:3840000
Cons ci ratio: 1.873484e-03	ci left: 5.322316e-01	ci right 5.332299e-01	k: 2045686	n:3840000
KS ci ratio: 1.020831e-01	ci left: 3.642558e-04	ci right 4.036915e-04	k: 1473	n:3840000
LRRC37A2   3840000 perm   6885 sec   (558 perm/sec)   p_kst 3.835937e-04   p_cons 5.327307e-01   p_joint 9.697917e-04

Joint ci ratio: 6.410203e-02	ci left: 9.392786e-04	ci right 1.001736e-03	k: 3735	n:3850000
Cons ci ratio: 1.871135e-03	ci left: 5.322095e-01	ci right 5.332065e-01	k: 2050926	n:3850000
KS ci ratio: 1.019104e-01	ci left: 3.645752e-04	ci right 4.039748e-04	k: 1478	n:3850000
LRRC37A2   3850000 perm   6917 sec   (557 perm/sec)   p_kst 3.838961e-04   p_cons 5.327081e-01   p_joint 9.701299e-04

Joint ci ratio: 6.407636e-02	ci left: 9.376100e-04	ci right 9.999301e-04	k: 3738	n:3860000
Cons ci ratio: 1.868707e-03	ci left: 5.322109e-01	ci right 5.332066e-01	k: 2056256	n:3860000
KS ci ratio: 1.018416e-01	ci left: 3.641357e-04	ci right 4.034595e-04	k: 1480	n:3860000
LRRC37A2   3860000 perm   6949 sec   (555 perm/sec)   p_kst 3.834197e-04   p_cons 5.327088e-01   p_joint 9.683938e-04

Joint ci ratio: 6.399939e-02	ci left: 9.374756e-04	ci right 9.997091e-04	k: 3747	n:3870000
Cons ci ratio: 1.866203e-03	ci left: 5.322351e-01	ci right 5.332295e-01	k: 2061674	n:3870000
KS ci ratio: 1.017043e-01	ci left: 3.642020e-04	ci right 4.034769e-04	k: 1484	n:3870000
LRRC37A2   3870000 perm   6981 sec   (554 perm/sec)   p_kst 3.834625e-04   p_cons 5.327323e-01   p_joint 9.682171e-04

Joint ci ratio: 6.388016e-02	ci left: 9.386100e-04	ci right 1.000798e-03	k: 3761	n:3880000
Cons ci ratio: 1.863830e-03	ci left: 5.322266e-01	ci right 5.332197e-01	k: 2066966	n:3880000
KS ci ratio: 1.015335e-01	ci left: 3.645193e-04	ci right 4.037584e-04	k: 1489	n:3880000
LRRC37A2   3880000 perm   7014 sec   (553 perm/sec)   p_kst 3.837629e-04   p_cons 5.327232e-01   p_joint 9.693299e-04

Joint ci ratio: 6.377850e-02	ci left: 9.392327e-04	ci right 1.001360e-03	k: 3773	n:3890000
Cons ci ratio: 1.861493e-03	ci left: 5.322112e-01	ci right 5.332031e-01	k: 2072231	n:3890000
KS ci ratio: 1.013975e-01	ci left: 3.645844e-04	ci right 4.037748e-04	k: 1493	n:3890000
LRRC37A2   3890000 perm   7046 sec   (552 perm/sec)   p_kst 3.838046e-04   p_cons 5.327072e-01   p_joint 9.699229e-04

Joint ci ratio: 6.370259e-02	ci left: 9.390953e-04	ci right 1.001137e-03	k: 3782	n:3900000
Cons ci ratio: 1.859128e-03	ci left: 5.322057e-01	ci right 5.331963e-01	k: 2077534	n:3900000
KS ci ratio: 1.012959e-01	ci left: 3.643993e-04	ci right 4.035282e-04	k: 1496	n:3900000
LRRC37A2   3900000 perm   7078 sec   (551 perm/sec)   p_kst 3.835897e-04   p_cons 5.327010e-01   p_joint 9.697436e-04

Joint ci ratio: 6.363536e-02	ci left: 9.387070e-04	ci right 1.000655e-03	k: 3790	n:3910000
Cons ci ratio: 1.856770e-03	ci left: 5.322007e-01	ci right 5.331900e-01	k: 2082839	n:3910000
KS ci ratio: 1.011945e-01	ci left: 3.642152e-04	ci right 4.032829e-04	k: 1499	n:3910000
LRRC37A2   3910000 perm   7111 sec   (550 perm/sec)   p_kst 3.833760e-04   p_cons 5.326954e-01   p_joint 9.693095e-04

Joint ci ratio: 6.348475e-02	ci left: 9.408313e-04	ci right 1.002767e-03	k: 3808	n:3920000
Cons ci ratio: 1.854294e-03	ci left: 5.322299e-01	ci right 5.332180e-01	k: 2088278	n:3920000
KS ci ratio: 1.010935e-01	ci left: 3.640320e-04	ci right 4.030388e-04	k: 1502	n:3920000
LRRC37A2   3920000 perm   7143 sec   (549 perm/sec)   p_kst 3.831633e-04   p_cons 5.327240e-01   p_joint 9.714286e-04

Joint ci ratio: 6.341820e-02	ci left: 9.404406e-04	ci right 1.002283e-03	k: 3816	n:3930000
Cons ci ratio: 1.851884e-03	ci left: 5.322437e-01	ci right 5.332305e-01	k: 2093657	n:3930000
KS ci ratio: 1.009258e-01	ci left: 3.643458e-04	ci right 4.033176e-04	k: 1507	n:3930000
LRRC37A2   3930000 perm   7177 sec   (548 perm/sec)   p_kst 3.834606e-04   p_cons 5.327372e-01   p_joint 9.709924e-04

Joint ci ratio: 6.333529e-02	ci left: 9.405515e-04	ci right 1.002318e-03	k: 3826	n:3940000
Cons ci ratio: 1.849558e-03	ci left: 5.322374e-01	ci right 5.332230e-01	k: 2098957	n:3940000
KS ci ratio: 1.006259e-01	ci left: 3.656478e-04	ci right 4.046358e-04	k: 1516	n:3940000
LRRC37A2   3940000 perm   7210 sec   (546 perm/sec)   p_kst 3.847716e-04   p_cons 5.327302e-01   p_joint 9.710660e-04

Joint ci ratio: 6.328573e-02	ci left: 9.396653e-04	ci right 1.001323e-03	k: 3832	n:3950000
Cons ci ratio: 1.847208e-03	ci left: 5.322400e-01	ci right 5.332243e-01	k: 2104292	n:3950000
KS ci ratio: 1.005596e-01	ci left: 3.652157e-04	ci right 4.041304e-04	k: 1518	n:3950000
LRRC37A2   3950000 perm   7242 sec   (545 perm/sec)   p_kst 3.843038e-04   p_cons 5.327322e-01   p_joint 9.701266e-04

Joint ci ratio: 6.323628e-02	ci left: 9.387836e-04	ci right 1.000334e-03	k: 3838	n:3960000
Cons ci ratio: 1.844865e-03	ci left: 5.322430e-01	ci right 5.332261e-01	k: 2109629	n:3960000
KS ci ratio: 1.004605e-01	ci left: 3.650319e-04	ci right 4.038865e-04	k: 1521	n:3960000
LRRC37A2   3960000 perm   7276 sec   (544 perm/sec)   p_kst 3.840909e-04   p_cons 5.327346e-01   p_joint 9.691919e-04

Joint ci ratio: 6.318696e-02	ci left: 9.379064e-04	ci right 9.993492e-04	k: 3844	n:3970000
Cons ci ratio: 1.842499e-03	ci left: 5.322549e-01	ci right 5.332367e-01	k: 2115001	n:3970000
KS ci ratio: 1.002958e-01	ci left: 3.653403e-04	ci right 4.041602e-04	k: 1526	n:3970000
LRRC37A2   3970000 perm   7309 sec   (543 perm/sec)   p_kst 3.843829e-04   p_cons 5.327458e-01   p_joint 9.682620e-04

Joint ci ratio: 6.312954e-02	ci left: 9.372808e-04	ci right 9.986248e-04	k: 3851	n:3980000
Cons ci ratio: 1.840189e-03	ci left: 5.322539e-01	ci right 5.332345e-01	k: 2120322	n:3980000
KS ci ratio: 1.002631e-01	ci left: 3.646673e-04	ci right 4.034023e-04	k: 1527	n:3980000
LRRC37A2   3980000 perm   7342 sec   (542 perm/sec)   p_kst 3.836683e-04   p_cons 5.327442e-01   p_joint 9.675879e-04

Joint ci ratio: 6.300694e-02	ci left: 9.386319e-04	ci right 9.999407e-04	k: 3866	n:3990000
Cons ci ratio: 1.837829e-03	ci left: 5.322687e-01	ci right 5.332480e-01	k: 2125706	n:3990000
KS ci ratio: 1.000341e-01	ci left: 3.654638e-04	ci right 4.041896e-04	k: 1534	n:3990000
LRRC37A2   3990000 perm   7376 sec   (541 perm/sec)   p_kst 3.844612e-04   p_cons 5.327584e-01   p_joint 9.689223e-04

Joint ci ratio: 6.287694e-02	ci left: 9.402224e-04	ci right 1.001504e-03	k: 3882	n:4000000
Cons ci ratio: 1.835502e-03	ci left: 5.322769e-01	ci right 5.332550e-01	k: 2131064	n:4000000
KS ci ratio: 9.983918e-02	ci left: 3.660127e-04	ci right 4.047166e-04	k: 1540	n:4000000
LRRC37A2   4000000 perm   7408 sec   (540 perm/sec)   p_kst 3.850000e-04   p_cons 5.327660e-01   p_joint 9.705000e-04

Outputting figure to mutsig2_images.part000000000099/LRRC37A2.2_5159_4000000_0.000385_0.53277_0.0009705.png
                gene_name: LRRC37A2
               theta_stop: 0.100 
                    nperm: 4000000 
                     p_ks: 0.00038 
        ci_ks_bounds_left: 0.00037 
       ci_ks_bounds_right: 0.00040 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.00097 
     ci_joint_bounds_left: 0.00094 
    ci_joint_bounds_right: 0.0010 

Current progress: 75 percent done.
LRRC49
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.030657e-02	ci left: 3.681846e-01	ci right 3.872867e-01	k: 3777	n:10000
Cons ci ratio: 6.039732e-03	ci left: 9.737631e-01	ci right 9.797547e-01	k: 9769	n:10000
KS ci ratio: 1.305483e-01	ci left: 7.727681e-02	ci right 8.816773e-02	k: 826	n:10000
LRRC49   10000 perm   2 sec   (6422 perm/sec)   p_kst 8.260000e-02   p_cons 9.769000e-01   p_joint 3.777000e-01

Joint ci ratio: 4.089418e-02	ci left: 3.083159e-01	ci right 3.212379e-01	k: 6295	n:20000
Cons ci ratio: 4.142278e-03	ci left: 9.760803e-01	ci right 9.801791e-01	k: 19564	n:20000
KS ci ratio: 9.286544e-02	ci left: 7.798885e-02	ci right 8.563325e-02	k: 1635	n:20000
LRRC49   20000 perm   4 sec   (5708 perm/sec)   p_kst 8.175000e-02   p_cons 9.782000e-01   p_joint 3.147500e-01

Outputting figure to mutsig2_images.part000000000099/LRRC49.2_2125_20000_0.08175_0.9782_0.31475.png
                gene_name: LRRC49
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000099
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 99 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1729>
Subject: Job 9877513: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1729>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000100> was used as the working directory.
Started at Fri Oct  5 22:45:44 2012
Results reported at Fri Oct  5 22:47:57 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000100.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000100.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 100  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000100.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    116.21 sec.
    Max Memory :      1950 MB
    Max Swap   :      4627 MB

    Max Processes  :         7
    Max Threads    :        72

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
100
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 100
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 100: processing genes 8977 - 9067
Calculating significance of each gene.
Using projection method.
8977	LSM7	1
8978	LSMD1	1
8979	LSP1	1
8980	LSR	1
8981	LSS	1
8982	LST-3TM12	1.276603e-01
8983	LST1	1
8984	LTA	1
8985	LTA4H	1
8986	LTB	1
8987	LTB4R	1
8988	LTB4R2	1
In gene LTBP1 the following bins exceed PROBCAP:
    PRAD-CH-5789	categ 6	N = 5016    n = 1	mu =   1.98e-07
8989	LTBP1	1.666847e-01
8990	LTBP2	1
8991	LTBP3	1
8992	LTBP4	1
8993	LTBR	6.844022e-02
8994	LTC4S	1
8995	LTF	1
8996	LTK	1
8997	LTV1	1
8998	LUC7L	1
8999	LUC7L2	1
9000/18134 9000	LUC7L3	1
9001	LUM	1
9002	LUZP1	1
9003	LUZP2	1
9004	LUZP4	1
9005	LXN	1
9006	LY6D	1
9007	LY6E	1
9008	LY6G5B	1
9009	LY6G5C	1
9010	LY6G6C	1
9011	LY6G6D	1
9012	LY6G6F	1
9013	LY6H	1
9014	LY6K	1
9015	LY75	2.066866e-01
9016	LY86	1
9017	LY9	2.232729e-01
9018	LY96	1
9019	LYAR	8.618007e-02
9020	LYG1	1
9021	LYG2	1
9022	LYL1	1
9023	LYN	1
9024	LYNX1	1
9025	LYPD1	1
9026	LYPD2	1
9027	LYPD3	1
9028	LYPD4	1
9029	LYPD5	8.099020e-02
9030	LYPD6	1
9031	LYPD6B	1
9032	LYPLA1	1
9033	LYPLA2	1
9034	LYPLAL1	1
9035	LYRM1	1
9036	LYRM2	1
9037	LYRM4	1
9038	LYRM5	1
9039	LYRM7	1
9040	LYSMD1	1
9041	LYSMD2	1
9042	LYSMD3	9.700706e-02
9043	LYSMD4	1
9044	LYST	2.583881e-01
9045	LYVE1	1
9046	LYZ	1
9047	LYZL1	1
9048	LYZL2	4.979130e-03
9049	LYZL4	1
9050	LYZL6	1
9051	LZIC	1
9052	LZTFL1	1
9053	LZTR1	1
9054	LZTS1	1
9055	LZTS2	1
9056	M6PR	1
9057	MAB21L1	1
9058	MAB21L2	1
9059	MACC1	1
In gene MACF1 the following bins exceed PROBCAP:
    PRAD-CH-5765	categ 6	N = 22835   n = 1	mu =   3.34e-07
9060	MACF1	8.097013e-01
9061	MACROD1	1
9062	MACROD2	1
9063	MAD1L1	2.497863e-01
9064	MAD2L1	1
9065	MAD2L1BP	1
9066	MAD2L2	1
9067	MADCAM1	2.072443e-02
Done

Running MutSig 2:
Scatter job 100: processing genes 8977 - 9067
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
LYST
Processing conservation and coverage...
86% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.068087e-01	ci left: 1.123248e-01	ci right 1.250982e-01	k: 1186	n:10000
Cons ci ratio: 4.113205e-01	ci left: 7.153353e-03	ci right 1.094096e-02	k: 89	n:10000
KS ci ratio: 1.244911e-01	ci left: 8.455810e-02	ci right 9.588194e-02	k: 901	n:10000
LYST   10000 perm   3 sec   (3519 perm/sec)   p_kst 9.010000e-02   p_cons 8.900000e-03   p_joint 1.186000e-01

Joint ci ratio: 1.652953e-01	ci left: 2.508551e-02	ci right 2.965329e-02	k: 546	n:20000
Cons ci ratio: 2.924988e-01	ci left: 7.598793e-03	ci right 1.024694e-02	k: 177	n:20000
KS ci ratio: 8.953869e-02	ci left: 8.352110e-02	ci right 9.139931e-02	k: 1748	n:20000
LYST   20000 perm   8 sec   (2522 perm/sec)   p_kst 8.740000e-02   p_cons 8.850000e-03   p_joint 2.730000e-02

Joint ci ratio: 1.083124e-01	ci left: 3.956314e-02	ci right 4.412613e-02	k: 1254	n:30000
Cons ci ratio: 2.357281e-01	ci left: 8.056540e-03	ci right 1.024011e-02	k: 273	n:30000
KS ci ratio: 7.275203e-02	ci left: 8.501430e-02	ci right 9.146570e-02	k: 2646	n:30000
LYST   30000 perm   11 sec   (2759 perm/sec)   p_kst 8.820000e-02   p_cons 9.100000e-03   p_joint 4.180000e-02

Joint ci ratio: 9.735771e-02	ci left: 3.705059e-02	ci right 4.086671e-02	k: 1557	n:40000
Cons ci ratio: 2.017461e-01	ci left: 8.406347e-03	ci right 1.031590e-02	k: 373	n:40000
KS ci ratio: 6.244738e-02	ci left: 8.686775e-02	ci right 9.249198e-02	k: 3586	n:40000
LYST   40000 perm   14 sec   (2873 perm/sec)   p_kst 8.965000e-02   p_cons 9.325000e-03   p_joint 3.892500e-02

Joint ci ratio: 1.439213e-01	ci left: 1.356691e-02	ci right 1.568999e-02	k: 730	n:50000
Cons ci ratio: 1.856276e-01	ci left: 8.019069e-03	ci right 9.678709e-03	k: 441	n:50000
KS ci ratio: 5.623968e-02	ci left: 8.606392e-02	ci right 9.106396e-02	k: 4427	n:50000
LYST   50000 perm   17 sec   (2932 perm/sec)   p_kst 8.854000e-02   p_cons 8.820000e-03   p_joint 1.460000e-02

Joint ci ratio: 1.296088e-01	ci left: 1.404257e-02	ci right 1.600474e-02	k: 900	n:60000
Cons ci ratio: 1.716556e-01	ci left: 7.876679e-03	ci right 9.371433e-03	k: 516	n:60000
KS ci ratio: 5.136934e-02	ci left: 8.618959e-02	ci right 9.075030e-02	k: 5307	n:60000
LYST   60000 perm   20 sec   (2971 perm/sec)   p_kst 8.845000e-02   p_cons 8.600000e-03   p_joint 1.500000e-02

Joint ci ratio: 1.233851e-01	ci left: 1.333657e-02	ci right 1.510404e-02	k: 994	n:70000
Cons ci ratio: 1.582840e-01	ci left: 7.997876e-03	ci right 9.386168e-03	k: 607	n:70000
KS ci ratio: 4.754898e-02	ci left: 8.639180e-02	ci right 9.061382e-02	k: 6194	n:70000
LYST   70000 perm   24 sec   (2902 perm/sec)   p_kst 8.848571e-02   p_cons 8.671429e-03   p_joint 1.420000e-02

Joint ci ratio: 1.126421e-01	ci left: 1.407185e-02	ci right 1.576360e-02	k: 1192	n:80000
Cons ci ratio: 1.470882e-01	ci left: 8.152388e-03	ci right 9.458607e-03	k: 703	n:80000
KS ci ratio: 4.459561e-02	ci left: 8.610749e-02	ci right 9.004745e-02	k: 7045	n:80000
LYST   80000 perm   28 sec   (2906 perm/sec)   p_kst 8.806250e-02   p_cons 8.787500e-03   p_joint 1.490000e-02

Joint ci ratio: 1.118845e-01	ci left: 1.270218e-02	ci right 1.421830e-02	k: 1210	n:90000
Cons ci ratio: 1.402935e-01	ci left: 7.996346e-03	ci right 9.213423e-03	k: 773	n:90000
KS ci ratio: 4.191123e-02	ci left: 8.672920e-02	ci right 9.045292e-02	k: 7972	n:90000
LYST   90000 perm   31 sec   (2907 perm/sec)   p_kst 8.857778e-02   p_cons 8.588889e-03   p_joint 1.344444e-02

Joint ci ratio: 1.065271e-01	ci left: 1.264781e-02	ci right 1.408062e-02	k: 1335	n:100000
Cons ci ratio: 1.343607e-01	ci left: 7.872633e-03	ci right 9.016154e-03	k: 843	n:100000
KS ci ratio: 3.981944e-02	ci left: 8.658805e-02	ci right 9.011587e-02	k: 8834	n:100000
LYST   100000 perm   34 sec   (2903 perm/sec)   p_kst 8.834000e-02   p_cons 8.430000e-03   p_joint 1.335000e-02

Joint ci ratio: 1.008625e-01	ci left: 1.286179e-02	ci right 1.423676e-02	k: 1489	n:110000
Cons ci ratio: 1.273083e-01	ci left: 8.001148e-03	ci right 9.097728e-03	k: 939	n:110000
KS ci ratio: 3.780762e-02	ci left: 8.734163e-02	ci right 9.071643e-02	k: 9792	n:110000
LYST   110000 perm   38 sec   (2893 perm/sec)   p_kst 8.901818e-02   p_cons 8.536364e-03   p_joint 1.353636e-02

Joint ci ratio: 9.664249e-02	ci left: 1.287094e-02	ci right 1.418606e-02	k: 1622	n:120000
Cons ci ratio: 1.219757e-01	ci left: 8.012567e-03	ci right 9.061391e-03	k: 1023	n:120000
KS ci ratio: 3.617811e-02	ci left: 8.750216e-02	ci right 9.073439e-02	k: 10693	n:120000
LYST   120000 perm   42 sec   (2871 perm/sec)   p_kst 8.910833e-02   p_cons 8.525000e-03   p_joint 1.351667e-02

Joint ci ratio: 9.269759e-02	ci left: 1.293983e-02	ci right 1.420508e-02	k: 1763	n:130000
Cons ci ratio: 1.169957e-01	ci left: 8.060385e-03	ci right 9.069412e-03	k: 1112	n:130000
KS ci ratio: 3.479372e-02	ci left: 8.740405e-02	ci right 9.050662e-02	k: 11563	n:130000
LYST   130000 perm   46 sec   (2852 perm/sec)   p_kst 8.894615e-02   p_cons 8.553846e-03   p_joint 1.356154e-02

Joint ci ratio: 8.720231e-02	ci left: 1.360771e-02	ci right 1.485538e-02	k: 1991	n:140000
Cons ci ratio: 1.121102e-01	ci left: 8.171555e-03	ci right 9.148959e-03	k: 1211	n:140000
KS ci ratio: 3.357328e-02	ci left: 8.724403e-02	ci right 9.023017e-02	k: 12422	n:140000
LYST   140000 perm   49 sec   (2839 perm/sec)   p_kst 8.872857e-02   p_cons 8.650000e-03   p_joint 1.422143e-02

Joint ci ratio: 8.475623e-02	ci left: 1.346372e-02	ci right 1.466184e-02	k: 2108	n:150000
Cons ci ratio: 1.090555e-01	ci left: 8.074039e-03	ci right 9.011773e-03	k: 1280	n:150000
KS ci ratio: 3.246346e-02	ci left: 8.715334e-02	ci right 9.003592e-02	k: 13288	n:150000
LYST   150000 perm   53 sec   (2822 perm/sec)   p_kst 8.858667e-02   p_cons 8.533333e-03   p_joint 1.405333e-02

Joint ci ratio: 8.220584e-02	ci left: 1.343612e-02	ci right 1.459408e-02	k: 2241	n:160000
Cons ci ratio: 1.055303e-01	ci left: 8.098576e-03	ci right 9.006867e-03	k: 1367	n:160000
KS ci ratio: 3.143862e-02	ci left: 8.716851e-02	ci right 8.995892e-02	k: 14169	n:160000
LYST   160000 perm   57 sec   (2805 perm/sec)   p_kst 8.855625e-02   p_cons 8.543750e-03   p_joint 1.400625e-02

Joint ci ratio: 7.978749e-02	ci left: 1.344109e-02	ci right 1.456381e-02	k: 2379	n:170000
Cons ci ratio: 1.022553e-01	ci left: 8.132123e-03	ci right 9.014171e-03	k: 1456	n:170000
KS ci ratio: 3.050398e-02	ci left: 8.718901e-02	ci right 8.989563e-02	k: 15051	n:170000
LYST   170000 perm   61 sec   (2784 perm/sec)   p_kst 8.853529e-02   p_cons 8.564706e-03   p_joint 1.399412e-02

Joint ci ratio: 7.774314e-02	ci left: 1.338600e-02	ci right 1.447418e-02	k: 2506	n:180000
Cons ci ratio: 9.985550e-02	ci left: 8.064799e-03	ci right 8.917811e-03	k: 1527	n:180000
KS ci ratio: 2.969610e-02	ci left: 8.694897e-02	ci right 8.957542e-02	k: 15886	n:180000
LYST   180000 perm   65 sec   (2763 perm/sec)   p_kst 8.825556e-02   p_cons 8.483333e-03   p_joint 1.392222e-02

Outputting figure to mutsig2_images.part000000000100/LYST.2_11610_180000_0.088256_0.0084833_0.013922.png
                gene_name: LYST
               theta_stop: 0.100 
                    nperm: 180000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.087 
       ci_ks_bounds_right: 0.090 
                   p_cons: 0.0085 
      ci_cons_bounds_left: 0.0081 
     ci_cons_bounds_right: 0.0089 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.014 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000100
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 100 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1642>
Subject: Job 9877519: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1642>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000101> was used as the working directory.
Started at Fri Oct  5 22:45:55 2012
Results reported at Fri Oct  5 22:47:04 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000101.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000101.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 101  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000101.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     92.98 sec.
    Max Memory :      1749 MB
    Max Swap   :      4683 MB

    Max Processes  :         7
    Max Threads    :        91

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
101
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 101
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 101: processing genes 9068 - 9158
Calculating significance of each gene.
Using projection method.
9068	MADD	1.821064e-01
9069	MAEA	1
9070	MAEL	1
9071	MAF	1
9072	MAF1	1
9073	MAFB	1
9074	MAFF	1
9075	MAFG	1
9076	MAFK	1
9077	MAG	1
9078	MAGEA1	1
9079	MAGEA10	1
9080	MAGEA11	1.289311e-01
9081	MAGEA12	1
9082	MAGEA3	1
9083	MAGEA4	1
9084	MAGEA5	1
9085	MAGEA6	5.890919e-02
9086	MAGEA8	1
9087	MAGEB1	1
9088	MAGEB10	1
9089	MAGEB16	1
9090	MAGEB18	1
9091	MAGEB2	1
9092	MAGEB3	1.487261e-02
9093	MAGEB4	1
9094	MAGEB6	1
9095	MAGEC1	1.179951e-01
9096	MAGEC2	1
9097	MAGEC3	1
9098	MAGED1	1
9099	MAGED2	1
9100	MAGEE1	1
9101	MAGEE2	1
9102	MAGEF1	1
9103	MAGEH1	1
9104	MAGEL2	1
9105	MAGI1	1
9106	MAGI2	1
9107	MAGI3	1
9108	MAGIX	1
9109	MAGOH	1
9110	MAGOHB	1
9111	MAGT1	1
9112	MAK	1
9113	MAK16	1
9114	MAL	2.357048e-02
9115	MAL2	1
9116	MALL	1
9117	MALT1	1
9118	MAMDC2	1
9119	MAMDC4	1
9120	MAML1	1
9121	MAML2	1.533729e-01
9122	MAML3	1
9123	MAMLD1	6.595653e-02
9124	MAMSTR	1
9125	MAN1A1	1.770973e-01
9126	MAN1A2	1
9127	MAN1B1	1
9128	MAN1C1	1
9129	MAN2A1	1
9130	MAN2A2	1
9131	MAN2B1	1
9132	MAN2B2	1
9133	MAN2C1	1
9134	MANBA	1
9135	MANBAL	1
9136	MANEA	1
9137	MANEAL	1
9138	MANF	1
9139	MANSC1	1
9140	MAOA	1
9141	MAOB	1
9142	MAP1A	1
9143	MAP1B	3.250434e-01
9144	MAP1D	1
9145	MAP1LC3A	1
9146	MAP1LC3B	1
9147	MAP1LC3B2	1
9148	MAP1LC3C	1
9149	MAP1S	2.735724e-01
9150	MAP2	1
9151	MAP2K1	1
9152	MAP2K2	1
9153	MAP2K3	1
9154	MAP2K4	1
9155	MAP2K5	1
9156	MAP2K6	1
9157	MAP2K7	1
9158	MAP3K1	1
Done

Running MutSig 2:
Scatter job 101: processing genes 9068 - 9158
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000101
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 101 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1652>
Subject: Job 9877529: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1652>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000102> was used as the working directory.
Started at Fri Oct  5 22:45:55 2012
Results reported at Fri Oct  5 22:47:17 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000102.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000102.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 102  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000102.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     84.39 sec.
    Max Memory :      1135 MB
    Max Swap   :      3926 MB

    Max Processes  :         7
    Max Threads    :        55

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
102
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 102
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 102: processing genes 9159 - 9248
Calculating significance of each gene.
Using projection method.
9159	MAP3K10	1.132209e-01
9160	MAP3K11	1
9161	MAP3K12	1
9162	MAP3K13	1
9163	MAP3K14	1
9164	MAP3K15	1
9165	MAP3K2	1
9166	MAP3K3	1
9167	MAP3K4	1
9168	MAP3K5	1
9169	MAP3K6	1
9170	MAP3K7	1
9171	MAP3K8	1
9172	MAP3K9	1
9173	MAP4	1
9174	MAP4K1	1.070854e-01
9175	MAP4K2	1
9176	MAP4K3	1
9177	MAP4K4	1
9178	MAP4K5	1
9179	MAP6	1.575785e-01
9180	MAP7	1.957961e-01
9181	MAP7D1	1
9182	MAP7D2	1.088549e-01
9183	MAP7D3	4.713780e-02
9184	MAP9	3.085410e-02
9185	MAPK1	1
9186	MAPK10	1
9187	MAPK11	1
9188	MAPK12	1
9189	MAPK13	1
9190	MAPK14	1
9191	MAPK15	1
9192	MAPK1IP1L	1
9193	MAPK3	1
9194	MAPK4	1
9195	MAPK6	1
9196	MAPK7	1
9197	MAPK8	1
9198	MAPK8IP1	1
9199	MAPK8IP2	1
9200	MAPK8IP3	3.919768e-01
9201	MAPK9	1
9202	MAPKAP1	1
9203	MAPKAPK2	1
In gene MAPKAPK3 the following bins exceed PROBCAP:
    PRAD-CH-5788	categ 6	N = 1124    n = 1	mu =   2.66e-07
9204	MAPKAPK3	3.449327e-02
9205	MAPKAPK5	1
9206	MAPKBP1	1
9207	MAPKSP1	1
9208	MAPRE1	7.719435e-03
9209	MAPRE2	1
9210	MAPRE3	1
9211	MAPT	2.106329e-01
9212	MARCH1	1
9213	MARCH10	1
9214	MARCH11	1
9215	MARCH2	1
9216	MARCH3	1
9217	MARCH4	1
9218	MARCH5	1
9219	MARCH6	1
9220	MARCH7	1
9221	MARCH8	1
9222	MARCH9	1
9223	MARCKS	1
9224	MARCKSL1	1
9225	MARCO	1
9226	MARK1	1
9227	MARK2	1
9228	MARK3	1.526391e-01
9229	MARK4	1.595532e-01
9230	MARS	1
9231	MARS2	1
9232	MARVELD2	1
9233	MARVELD3	1
9234	MAS1	1
9235	MAS1L	9.248066e-03
9236	MASP1	3.243490e-01
9237	MASP2	1.960594e-01
9238	MAST1	1
9239	MAST2	1.657607e-01
9240	MAST3	1
9241	MAST4	1
9242	MASTL	1
9243	MAT1A	1
9244	MAT2A	1
9245	MAT2B	1
9246	MATK	1
9247	MATN1	1
9248	MATN2	1
Done

Running MutSig 2:
Scatter job 102: processing genes 9159 - 9248
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000102
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 102 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1655>
Subject: Job 9877531: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1655>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000103> was used as the working directory.
Started at Fri Oct  5 22:46:34 2012
Results reported at Fri Oct  5 22:48:15 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000103.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000103.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 103  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000103.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    108.81 sec.
    Max Memory :      1903 MB
    Max Swap   :      4589 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
103
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 103
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 103: processing genes 9249 - 9339
Calculating significance of each gene.
Using projection method.
9249	MATN3	1
9250	MATN4	1
9251	MATR3	1
9252	MAVS	1
9253	MAX	1
9254	MAZ	1
9255	MB	1
9256	MBD1	1
9257	MBD2	1
9258	MBD3	1
9259	MBD3L1	1
9260	MBD4	1
9261	MBD5	1
9262	MBD6	6.218091e-02
9263	MBIP	1
9264	MBL2	1
9265	MBLAC1	1
9266	MBLAC2	1
9267	MBNL1	1
9268	MBNL2	1
9269	MBNL3	1
9270	MBOAT1	1
9271	MBOAT2	1
9272	MBOAT7	9.680317e-02
9273	MBP	1
9274	MBTD1	1
9275	MBTPS1	1
9276	MBTPS2	1
9277	MC1R	1
9278	MC2R	1
9279	MC3R	1
9280	MC4R	1
9281	MC5R	1
9282	MCAM	1
9283	MCART1	1
9284	MCART2	1
9285	MCART6	1
9286	MCAT	1
9287	MCC	4.163500e-02
9288	MCCC1	1
9289	MCCC2	1
9290	MCCD1	1
9291	MCEE	1
9292	MCF2	1
9293	MCF2L	3.175503e-01
9294	MCF2L2	1
9295	MCFD2	1
9296	MCHR1	1
9297	MCHR2	1
9298	MCL1	4.146152e-02
9299	MCM10	1
9300	MCM2	1
9301	MCM3	1
9302	MCM3AP	1
9303	MCM4	1.608822e-01
9304	MCM5	1
9305	MCM6	5.447608e-02
9306	MCM7	1
9307	MCM8	1
9308	MCM9	1
9309	MCOLN1	1
9310	MCOLN2	1
9311	MCOLN3	1
9312	MCPH1	1
9313	MCRS1	1
9314	MCTP1	1
9315	MCTP2	1
9316	MCTS1	1
9317	MDC1	1
9318	MDFI	1
9319	MDFIC	1
9320	MDGA1	2.733488e-01
9321	MDGA2	1
9322	MDH1	1
9323	MDH1B	1
9324	MDH2	1
9325	MDK	1
9326	MDM1	1
9327	MDM2	1
9328	MDM4	1
9329	MDN1	6.029450e-01
9330	MDP1	1
9331	ME1	1
9332	ME2	1
9333	ME3	1
9334	MEA1	1
9335	MEAF6	1
9336	MECOM	1.389129e-01
9337	MECP2	1
9338	MECR	1
9339	MED1	1.903479e-02
Done

Running MutSig 2:
Scatter job 103: processing genes 9249 - 9339
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MCC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.706228e-02	ci left: 6.679356e-01	ci right 6.863611e-01	k: 6772	n:10000
KS ci ratio: 4.286896e-02	ci left: 4.455036e-01	ci right 4.651224e-01	k: 4553	n:10000
MCC   10000 perm   3 sec   (2952 perm/sec)   p_kst 4.553000e-01   p_cons 6.772000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000103/MCC.2_3197_10000_0.4553_0.6772_1.png
                gene_name: MCC
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
MED1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.760228e-02	ci left: 6.591754e-01	ci right 6.777264e-01	k: 6685	n:10000
Cons ci ratio: 1.511547e-02	ci left: 8.638635e-01	ci right 8.771198e-01	k: 8706	n:10000
KS ci ratio: 1.027723e-01	ci left: 1.204354e-01	ci right 1.335827e-01	k: 1269	n:10000
MED1   10000 perm   2 sec   (5057 perm/sec)   p_kst 1.269000e-01   p_cons 8.706000e-01   p_joint 6.685000e-01

Joint ci ratio: 2.077899e-02	ci left: 6.335035e-01	ci right 6.468558e-01	k: 12804	n:20000
Cons ci ratio: 1.103785e-02	ci left: 8.583090e-01	ci right 8.678852e-01	k: 17263	n:20000
KS ci ratio: 7.142143e-02	ci left: 1.262051e-01	ci right 1.356025e-01	k: 2617	n:20000
MED1   20000 perm   4 sec   (4564 perm/sec)   p_kst 1.308500e-01   p_cons 8.631500e-01   p_joint 6.402000e-01

Outputting figure to mutsig2_images.part000000000103/MED1.2_4814_20000_0.13085_0.86315_0.6402.png
                gene_name: MED1
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000103
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 103 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1724>
Subject: Job 9877544: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1724>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000104> was used as the working directory.
Started at Fri Oct  5 22:46:34 2012
Results reported at Sat Oct  6 01:08:27 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000104.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000104.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 104  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000104.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   8473.89 sec.
    Max Memory :      2040 MB
    Max Swap   :      4746 MB

    Max Processes  :         7
    Max Threads    :        71

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
104
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 104
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 104: processing genes 9340 - 9430
Calculating significance of each gene.
Using projection method.
9340	MED10	1
9341	MED11	1
9342	MED12	9.698507e-02
9343	MED12L	1
9344	MED13	1.868937e-01
9345	MED13L	1
9346	MED14	1.388505e-01
9347	MED15	1.431091e-02
9348	MED16	2.342448e-01
9349	MED17	7.004908e-02
9350	MED18	1
9351	MED19	1
9352	MED20	1
9353	MED21	1
9354	MED22	1
9355	MED23	1
9356	MED24	1
9357	MED25	1
9358	MED26	1
9359	MED27	1
9360	MED28	1
9361	MED29	1
9362	MED30	1
9363	MED31	1
9364	MED4	1
9365	MED6	1
9366	MED7	1
9367	MED8	1
9368	MED9	1
9369	MEF2A	7.146171e-02
9370	MEF2B	1
9371	MEF2C	1.045656e-01
9372	MEF2D	1
9373	MEFV	1
9374	MEGF10	1.118958e-01
9375	MEGF11	1
9376	MEGF6	1
9377	MEGF8	1
9378	MEGF9	1
9379	MEI1	1
9380	MEIG1	1
9381	MEIS1	1
9382	MEIS2	1
9383	MEIS3	1
9384	MELK	1
9385	MEMO1	1
9386	MEN1	1.928705e-01
9387	MEOX1	1
9388	MEOX2	1.010794e-01
9389	MEP1A	1
9390	MEP1B	1
9391	MEPCE	1.606644e-01
9392	MEPE	1
9393	MERTK	1
9394	MESDC1	1
9395	MESDC2	1
9396	MESP2	1
9397	MEST	1
9398	MET	1.645145e-01
9399	METAP1	1
9400	METAP2	1
9401	METRN	1
9402	METRNL	1
9403	METT10D	1
9404	METT11D1	1
9405	METT5D1	1
9406	METTL1	1
9407	METTL10	1
9408	METTL11A	1
9409	METTL12	1
9410	METTL13	1
9411	METTL14	1
9412	METTL2A	1
9413	METTL2B	4.478453e-02
9414	METTL3	1.793765e-02
9415	METTL4	1
9416	METTL5	1
9417	METTL6	1
9418	METTL7A	1
9419	METTL7B	1
9420	METTL8	1
9421	METTL9	1
9422	MEX3A	1
9423	MEX3B	1
9424	MEX3C	1
9425	MEX3D	1
9426	MFAP1	1
9427	MFAP2	1
9428	MFAP3	1
9429	MFAP3L	1
9430	MFAP4	7.750417e-02
Done

Running MutSig 2:
Scatter job 104: processing genes 9340 - 9430
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MED12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.145810e-01	ci left: 1.943009e-03	ci right 4.162249e-03	k: 29	n:10000
Cons ci ratio: 3.364216e-02	ci left: 5.660425e-01	ci right 5.855133e-01	k: 5758	n:10000
KS ci ratio: 1.959510e+00	ci left: 6.187149e-05	ci right 8.764745e-04	k: 3	n:10000
MED12   10000 perm   2 sec   (5180 perm/sec)   p_kst 3.000000e-04   p_cons 5.758000e-01   p_joint 2.900000e-03

Joint ci ratio: 1.131239e+00	ci left: 2.745890e-04	ci right 9.838883e-04	k: 11	n:20000
Cons ci ratio: 2.376568e-02	ci left: 5.694160e-01	ci right 5.831619e-01	k: 11526	n:20000
KS ci ratio: 1.752814e+00	ci left: 5.449587e-05	ci right 5.119995e-04	k: 4	n:20000
MED12   20000 perm   6 sec   (3218 perm/sec)   p_kst 2.000000e-04   p_cons 5.763000e-01   p_joint 5.500000e-04

Joint ci ratio: 8.354264e-01	ci left: 4.333616e-04	ci right 1.069826e-03	k: 21	n:30000
Cons ci ratio: 1.933355e-02	ci left: 5.724875e-01	ci right 5.836974e-01	k: 17343	n:30000
KS ci ratio: 1.385721e+00	ci left: 9.381708e-05	ci right 4.806964e-04	k: 7	n:30000
MED12   30000 perm   9 sec   (3517 perm/sec)   p_kst 2.333333e-04   p_cons 5.781000e-01   p_joint 7.000000e-04

Joint ci ratio: 5.432460e-01	ci left: 9.494640e-04	ci right 1.676053e-03	k: 51	n:40000
Cons ci ratio: 1.679505e-02	ci left: 5.717400e-01	ci right 5.814489e-01	k: 23064	n:40000
KS ci ratio: 1.239442e+00	ci left: 1.028893e-04	ci right 4.270769e-04	k: 9	n:40000
MED12   40000 perm   11 sec   (3639 perm/sec)   p_kst 2.250000e-04   p_cons 5.766000e-01   p_joint 1.275000e-03

Joint ci ratio: 8.355546e-01	ci left: 2.600048e-04	ci right 6.419433e-04	k: 21	n:50000
Cons ci ratio: 1.508612e-02	ci left: 5.701721e-01	ci right 5.788592e-01	k: 28726	n:50000
KS ci ratio: 1.087060e+00	ci left: 1.240175e-04	ci right 4.191941e-04	k: 12	n:50000
MED12   50000 perm   13 sec   (3718 perm/sec)   p_kst 2.400000e-04   p_cons 5.745200e-01   p_joint 4.200000e-04

Joint ci ratio: 8.172130e-01	ci left: 2.298019e-04	ci right 5.550854e-04	k: 22	n:60000
Cons ci ratio: 1.377794e-02	ci left: 5.703318e-01	ci right 5.782610e-01	k: 34458	n:60000
KS ci ratio: 1.087086e+00	ci left: 1.033471e-04	ci right 3.493337e-04	k: 12	n:60000
MED12   60000 perm   16 sec   (3756 perm/sec)   p_kst 2.000000e-04   p_cons 5.743000e-01   p_joint 3.666667e-04

Joint ci ratio: 8.172364e-01	ci left: 1.969713e-04	ci right 4.757939e-04	k: 22	n:70000
Cons ci ratio: 1.277681e-02	ci left: 5.698261e-01	ci right 5.771678e-01	k: 40145	n:70000
KS ci ratio: 1.047552e+00	ci left: 9.888862e-05	ci right 3.175561e-04	k: 13	n:70000
MED12   70000 perm   19 sec   (3763 perm/sec)   p_kst 1.857143e-04   p_cons 5.735000e-01   p_joint 3.142857e-04

Joint ci ratio: 7.542723e-01	ci left: 2.123114e-04	ci right 4.761643e-04	k: 26	n:80000
Cons ci ratio: 1.195133e-02	ci left: 5.700765e-01	ci right 5.769431e-01	k: 45881	n:80000
KS ci ratio: 9.506327e-01	ci left: 1.143215e-04	ci right 3.247672e-04	k: 16	n:80000
MED12   80000 perm   21 sec   (3755 perm/sec)   p_kst 2.000000e-04   p_cons 5.735125e-01   p_joint 3.250000e-04

Joint ci ratio: 6.822555e-01	ci left: 2.432120e-04	ci right 5.019016e-04	k: 32	n:90000
Cons ci ratio: 1.125559e-02	ci left: 5.708060e-01	ci right 5.772782e-01	k: 51664	n:90000
KS ci ratio: 8.764364e-01	ci left: 1.271073e-04	ci right 3.296566e-04	k: 19	n:90000
MED12   90000 perm   24 sec   (3746 perm/sec)   p_kst 2.111111e-04   p_cons 5.740444e-01   p_joint 3.555556e-04

Joint ci ratio: 6.443216e-01	ci left: 2.521519e-04	ci right 4.983573e-04	k: 36	n:100000
Cons ci ratio: 1.068269e-02	ci left: 5.707579e-01	ci right 5.768978e-01	k: 57383	n:100000
KS ci ratio: 8.356507e-01	ci left: 1.299979e-04	ci right 3.209895e-04	k: 21	n:100000
MED12   100000 perm   27 sec   (3727 perm/sec)   p_kst 2.100000e-04   p_cons 5.738300e-01   p_joint 3.600000e-04

Joint ci ratio: 6.047509e-01	ci left: 2.674884e-04	ci right 5.056130e-04	k: 41	n:110000
Cons ci ratio: 1.019073e-02	ci left: 5.706528e-01	ci right 5.765070e-01	k: 63094	n:110000
KS ci ratio: 8.000757e-01	ci left: 1.325502e-04	ci right 3.137226e-04	k: 23	n:110000
MED12   110000 perm   30 sec   (3698 perm/sec)   p_kst 2.090909e-04   p_cons 5.735818e-01   p_joint 3.727273e-04

Joint ci ratio: 5.778593e-01	ci left: 2.735403e-04	ci right 5.017477e-04	k: 45	n:120000
Cons ci ratio: 9.377374e-03	ci left: 5.900805e-01	ci right 5.956483e-01	k: 71144	n:120000
KS ci ratio: 7.839151e-01	ci left: 1.281478e-04	ci right 2.975696e-04	k: 24	n:120000
MED12   120000 perm   33 sec   (3627 perm/sec)   p_kst 2.000000e-04   p_cons 5.928667e-01   p_joint 3.750000e-04

Joint ci ratio: 5.656966e-01	ci left: 2.656566e-04	ci right 4.807408e-04	k: 47	n:130000
Cons ci ratio: 9.017346e-03	ci left: 5.897692e-01	ci right 5.951190e-01	k: 77018	n:130000
KS ci ratio: 7.543231e-01	ci left: 1.306507e-04	ci right 2.930327e-04	k: 26	n:130000
MED12   130000 perm   36 sec   (3595 perm/sec)   p_kst 2.000000e-04   p_cons 5.924462e-01   p_joint 3.615385e-04

Joint ci ratio: 4.717946e-01	ci left: 3.771953e-04	ci right 6.157186e-04	k: 68	n:140000
Cons ci ratio: 8.688625e-03	ci left: 5.899063e-01	ci right 5.950613e-01	k: 82948	n:140000
KS ci ratio: 6.928830e-01	ci left: 1.504548e-04	ci right 3.142856e-04	k: 31	n:140000
MED12   140000 perm   39 sec   (3566 perm/sec)   p_kst 2.214286e-04   p_cons 5.924857e-01   p_joint 4.857143e-04

Joint ci ratio: 4.618640e-01	ci left: 3.696952e-04	ci right 5.970087e-04	k: 71	n:150000
Cons ci ratio: 8.390405e-03	ci left: 5.902018e-01	ci right 5.951813e-01	k: 88904	n:150000
KS ci ratio: 6.823071e-01	ci left: 1.459243e-04	ci right 3.011498e-04	k: 32	n:150000
MED12   150000 perm   42 sec   (3536 perm/sec)   p_kst 2.133333e-04   p_cons 5.926933e-01   p_joint 4.733333e-04

Joint ci ratio: 4.381584e-01	ci left: 3.909254e-04	ci right 6.153224e-04	k: 79	n:160000
Cons ci ratio: 8.128179e-03	ci left: 5.900313e-01	ci right 5.948529e-01	k: 94791	n:160000
KS ci ratio: 6.276239e-01	ci left: 1.680744e-04	ci right 3.259729e-04	k: 38	n:160000
MED12   160000 perm   46 sec   (3501 perm/sec)   p_kst 2.375000e-04   p_cons 5.924438e-01   p_joint 4.937500e-04

Joint ci ratio: 4.276001e-01	ci left: 3.888949e-04	ci right 6.052057e-04	k: 83	n:170000
Cons ci ratio: 7.891686e-03	ci left: 5.897240e-01	ci right 5.944022e-01	k: 100651	n:170000
KS ci ratio: 6.047926e-01	ci left: 1.730778e-04	ci right 3.271690e-04	k: 41	n:170000
MED12   170000 perm   49 sec   (3469 perm/sec)   p_kst 2.411765e-04   p_cons 5.920647e-01   p_joint 4.882353e-04

Joint ci ratio: 5.059841e-01	ci left: 2.495287e-04	ci right 4.227894e-04	k: 59	n:180000
Cons ci ratio: 7.668165e-03	ci left: 5.898644e-01	ci right 5.944104e-01	k: 106585	n:180000
KS ci ratio: 6.047969e-01	ci left: 1.634621e-04	ci right 3.089937e-04	k: 41	n:180000
MED12   180000 perm   52 sec   (3438 perm/sec)   p_kst 2.277778e-04   p_cons 5.921389e-01   p_joint 3.277778e-04

Joint ci ratio: 4.063845e-01	ci left: 3.903593e-04	ci right 5.938087e-04	k: 92	n:190000
Cons ci ratio: 7.458637e-03	ci left: 5.902497e-01	ci right 5.946738e-01	k: 112568	n:190000
KS ci ratio: 5.657303e-01	ci left: 1.817625e-04	ci right 3.289341e-04	k: 47	n:190000
MED12   190000 perm   56 sec   (3401 perm/sec)   p_kst 2.473684e-04   p_cons 5.924632e-01   p_joint 4.842105e-04

Joint ci ratio: 3.919010e-01	ci left: 4.023292e-04	ci right 6.026123e-04	k: 99	n:200000
Cons ci ratio: 7.271185e-03	ci left: 5.902126e-01	ci right 5.945247e-01	k: 118474	n:200000
KS ci ratio: 5.333711e-01	ci left: 1.985093e-04	ci right 3.466124e-04	k: 53	n:200000
MED12   200000 perm   59 sec   (3370 perm/sec)   p_kst 2.650000e-04   p_cons 5.923700e-01   p_joint 4.950000e-04

Joint ci ratio: 3.842915e-01	ci left: 4.003597e-04	ci right 5.948140e-04	k: 103	n:210000
Cons ci ratio: 7.093902e-03	ci left: 5.904043e-01	ci right 5.946122e-01	k: 124427	n:210000
KS ci ratio: 5.237609e-01	ci left: 1.973084e-04	ci right 3.408916e-04	k: 55	n:210000
MED12   210000 perm   63 sec   (3339 perm/sec)   p_kst 2.619048e-04   p_cons 5.925095e-01   p_joint 4.904762e-04

Joint ci ratio: 3.638661e-01	ci left: 4.315837e-04	ci right 6.274221e-04	k: 115	n:220000
Cons ci ratio: 6.930549e-03	ci left: 5.904705e-01	ci right 5.945816e-01	k: 130356	n:220000
KS ci ratio: 4.899276e-01	ci left: 2.200565e-04	ci right 3.663688e-04	k: 63	n:220000
MED12   220000 perm   67 sec   (3308 perm/sec)   p_kst 2.863636e-04   p_cons 5.925273e-01   p_joint 5.227273e-04

Joint ci ratio: 3.505194e-01	ci left: 4.484402e-04	ci right 6.427680e-04	k: 124	n:230000
Cons ci ratio: 6.779144e-03	ci left: 5.904494e-01	ci right 5.944700e-01	k: 136266	n:230000
KS ci ratio: 4.619031e-01	ci left: 2.411015e-04	ci right 3.893619e-04	k: 71	n:230000
MED12   230000 perm   70 sec   (3279 perm/sec)   p_kst 3.086957e-04   p_cons 5.924609e-01   p_joint 5.391304e-04

Joint ci ratio: 3.477510e-01	ci left: 4.373573e-04	ci right 6.250481e-04	k: 126	n:240000
Cons ci ratio: 6.633697e-03	ci left: 5.906894e-01	ci right 5.946250e-01	k: 142238	n:240000
KS ci ratio: 4.556195e-01	ci left: 2.384255e-04	ci right 3.824289e-04	k: 73	n:240000
MED12   240000 perm   74 sec   (3242 perm/sec)   p_kst 3.041667e-04   p_cons 5.926583e-01   p_joint 5.250000e-04

Joint ci ratio: 3.411014e-01	ci left: 4.381332e-04	ci right 6.217694e-04	k: 131	n:250000
Cons ci ratio: 6.504118e-03	ci left: 5.903987e-01	ci right 5.942552e-01	k: 148082	n:250000
KS ci ratio: 4.437825e-01	ci left: 2.430762e-04	ci right 3.849323e-04	k: 77	n:250000
MED12   250000 perm   78 sec   (3213 perm/sec)   p_kst 3.080000e-04   p_cons 5.923280e-01   p_joint 5.240000e-04

Joint ci ratio: 3.843100e-01	ci left: 3.233648e-04	ci right 4.804315e-04	k: 103	n:260000
Cons ci ratio: 6.375695e-03	ci left: 5.905968e-01	ci right 5.943781e-01	k: 154047	n:260000
KS ci ratio: 4.328225e-01	ci left: 2.474140e-04	ci right 3.871992e-04	k: 81	n:260000
MED12   260000 perm   82 sec   (3183 perm/sec)   p_kst 3.115385e-04   p_cons 5.924885e-01   p_joint 3.961538e-04

Joint ci ratio: 3.771260e-01	ci left: 3.247854e-04	ci right 4.788637e-04	k: 107	n:270000
Cons ci ratio: 6.257612e-03	ci left: 5.905474e-01	ci right 5.942580e-01	k: 159949	n:270000
KS ci ratio: 4.276397e-01	ci left: 2.448555e-04	ci right 3.810637e-04	k: 83	n:270000
MED12   270000 perm   86 sec   (3154 perm/sec)   p_kst 3.074074e-04   p_cons 5.924037e-01   p_joint 3.962963e-04

Joint ci ratio: 3.703304e-01	ci left: 3.261299e-04	ci right 4.773829e-04	k: 111	n:280000
Cons ci ratio: 6.147219e-03	ci left: 5.903949e-01	ci right 5.940389e-01	k: 165821	n:280000
KS ci ratio: 4.178070e-01	ci left: 2.488767e-04	ci right 3.832510e-04	k: 87	n:280000
MED12   280000 perm   90 sec   (3125 perm/sec)   p_kst 3.107143e-04   p_cons 5.922179e-01   p_joint 3.964286e-04

Joint ci ratio: 3.623304e-01	ci left: 3.305387e-04	ci right 4.797428e-04	k: 116	n:290000
Cons ci ratio: 6.045099e-03	ci left: 5.900430e-01	ci right 5.936241e-01	k: 171632	n:290000
KS ci ratio: 4.064192e-01	ci left: 2.557488e-04	ci right 3.890544e-04	k: 92	n:290000
MED12   290000 perm   94 sec   (3095 perm/sec)   p_kst 3.172414e-04   p_cons 5.918345e-01   p_joint 4.000000e-04

Joint ci ratio: 3.577732e-01	ci left: 3.286161e-04	ci right 4.746523e-04	k: 119	n:300000
Cons ci ratio: 5.942114e-03	ci left: 5.901854e-01	ci right 5.937061e-01	k: 177584	n:300000
KS ci ratio: 4.021192e-01	ci left: 2.532124e-04	ci right 3.834272e-04	k: 94	n:300000
MED12   300000 perm   98 sec   (3065 perm/sec)   p_kst 3.133333e-04   p_cons 5.919467e-01   p_joint 3.966667e-04

Joint ci ratio: 3.505442e-01	ci left: 3.327100e-04	ci right 4.768988e-04	k: 124	n:310000
Cons ci ratio: 6.077192e-03	ci left: 5.712984e-01	ci right 5.747841e-01	k: 177643	n:310000
KS ci ratio: 3.919361e-01	ci left: 2.595632e-04	ci right 3.887896e-04	k: 99	n:310000
MED12   310000 perm   102 sec   (3036 perm/sec)   p_kst 3.193548e-04   p_cons 5.730419e-01   p_joint 4.000000e-04

Joint ci ratio: 3.477742e-01	ci left: 3.280145e-04	ci right 4.687919e-04	k: 126	n:320000
Cons ci ratio: 5.982377e-03	ci left: 5.712527e-01	ci right 5.746835e-01	k: 183350	n:320000
KS ci ratio: 3.899924e-01	ci left: 2.542695e-04	ci right 3.800709e-04	k: 100	n:320000
MED12   320000 perm   106 sec   (3008 perm/sec)   p_kst 3.125000e-04   p_cons 5.729688e-01   p_joint 3.937500e-04

Joint ci ratio: 3.424235e-01	ci left: 3.291455e-04	ci right 4.677538e-04	k: 130	n:330000
Cons ci ratio: 5.890881e-03	ci left: 5.712920e-01	ci right 5.746703e-01	k: 189084	n:330000
KS ci ratio: 3.843265e-01	ci left: 2.547704e-04	ci right 3.785252e-04	k: 103	n:330000
MED12   330000 perm   111 sec   (2977 perm/sec)   p_kst 3.121212e-04   p_cons 5.729818e-01   p_joint 3.939394e-04

Joint ci ratio: 3.424255e-01	ci left: 3.194645e-04	ci right 4.539968e-04	k: 130	n:340000
Cons ci ratio: 5.802203e-03	ci left: 5.714353e-01	ci right 5.747634e-01	k: 194854	n:340000
KS ci ratio: 3.843283e-01	ci left: 2.472769e-04	ci right 3.673924e-04	k: 103	n:340000
MED12   340000 perm   115 sec   (2947 perm/sec)   p_kst 3.029412e-04   p_cons 5.731000e-01   p_joint 3.823529e-04

Joint ci ratio: 3.385711e-01	ci left: 3.181754e-04	ci right 4.503271e-04	k: 133	n:350000
Cons ci ratio: 5.719015e-03	ci left: 5.714336e-01	ci right 5.747138e-01	k: 200576	n:350000
KS ci ratio: 3.806859e-01	ci left: 2.453766e-04	ci right 3.631568e-04	k: 105	n:350000
MED12   350000 perm   120 sec   (2918 perm/sec)   p_kst 3.000000e-04   p_cons 5.730743e-01   p_joint 3.800000e-04

Joint ci ratio: 3.373161e-01	ci left: 3.118791e-04	ci right 4.408310e-04	k: 134	n:360000
Cons ci ratio: 5.640458e-03	ci left: 5.713322e-01	ci right 5.745666e-01	k: 206262	n:360000
KS ci ratio: 3.789039e-01	ci left: 2.410731e-04	ci right 3.561111e-04	k: 106	n:360000
MED12   360000 perm   125 sec   (2891 perm/sec)   p_kst 2.944444e-04   p_cons 5.729500e-01   p_joint 3.722222e-04

Joint ci ratio: 3.312373e-01	ci left: 3.158295e-04	ci right 4.435600e-04	k: 139	n:370000
Cons ci ratio: 5.565143e-03	ci left: 5.712285e-01	ci right 5.744190e-01	k: 211945	n:370000
KS ci ratio: 3.703486e-01	ci left: 2.467990e-04	ci right 3.612663e-04	k: 111	n:370000
MED12   370000 perm   129 sec   (2858 perm/sec)   p_kst 3.000000e-04   p_cons 5.728243e-01   p_joint 3.756757e-04

Joint ci ratio: 3.232532e-01	ci left: 3.244265e-04	ci right 4.518158e-04	k: 146	n:380000
Cons ci ratio: 5.489961e-03	ci left: 5.713807e-01	ci right 5.745287e-01	k: 217723	n:380000
KS ci ratio: 3.623479e-01	ci left: 2.522512e-04	ci right 3.661229e-04	k: 116	n:380000
MED12   380000 perm   134 sec   (2828 perm/sec)   p_kst 3.052632e-04   p_cons 5.729553e-01   p_joint 3.842105e-04

Joint ci ratio: 3.210771e-01	ci left: 3.208214e-04	ci right 4.457725e-04	k: 148	n:390000
Cons ci ratio: 5.416609e-03	ci left: 5.716279e-01	ci right 5.747351e-01	k: 223541	n:390000
KS ci ratio: 3.592905e-01	ci left: 2.504465e-04	ci right 3.623264e-04	k: 118	n:390000
MED12   390000 perm   139 sec   (2802 perm/sec)   p_kst 3.025641e-04   p_cons 5.731821e-01   p_joint 3.794872e-04

Joint ci ratio: 3.158214e-01	ci left: 3.243020e-04	ci right 4.481238e-04	k: 153	n:400000
Cons ci ratio: 5.349589e-03	ci left: 5.715454e-01	ci right 5.746136e-01	k: 229232	n:400000
KS ci ratio: 3.533997e-01	ci left: 2.532903e-04	ci right 3.641596e-04	k: 122	n:400000
MED12   400000 perm   144 sec   (2771 perm/sec)   p_kst 3.050000e-04   p_cons 5.730800e-01   p_joint 3.825000e-04

Joint ci ratio: 3.148021e-01	ci left: 3.186380e-04	ci right 4.398256e-04	k: 154	n:410000
Cons ci ratio: 5.283284e-03	ci left: 5.716257e-01	ci right 5.746562e-01	k: 234988	n:410000
KS ci ratio: 3.519727e-01	ci left: 2.493353e-04	ci right 3.579321e-04	k: 123	n:410000
MED12   410000 perm   149 sec   (2743 perm/sec)   p_kst 3.000000e-04   p_cons 5.731415e-01   p_joint 3.756098e-04

Joint ci ratio: 2.799343e-01	ci left: 4.014162e-04	ci right 5.342052e-04	k: 195	n:420000
Cons ci ratio: 5.219232e-03	ci left: 5.717167e-01	ci right 5.747108e-01	k: 240750	n:420000
KS ci ratio: 3.477907e-01	ci left: 2.499140e-04	ci right 3.571780e-04	k: 126	n:420000
MED12   420000 perm   155 sec   (2718 perm/sec)   p_kst 3.000000e-04   p_cons 5.732143e-01   p_joint 4.642857e-04

Joint ci ratio: 2.771211e-01	ci left: 4.007336e-04	ci right 5.317322e-04	k: 199	n:430000
Cons ci ratio: 5.157332e-03	ci left: 5.718154e-01	ci right 5.747743e-01	k: 246517	n:430000
KS ci ratio: 3.437544e-01	ci left: 2.504730e-04	ci right 3.564518e-04	k: 129	n:430000
MED12   430000 perm   160 sec   (2690 perm/sec)   p_kst 3.000000e-04   p_cons 5.732953e-01   p_joint 4.627907e-04

Joint ci ratio: 2.750663e-01	ci left: 3.979721e-04	ci right 5.269365e-04	k: 202	n:440000
Cons ci ratio: 5.095760e-03	ci left: 5.720848e-01	ci right 5.750097e-01	k: 252361	n:440000
KS ci ratio: 3.398553e-01	ci left: 2.510134e-04	ci right 3.557518e-04	k: 132	n:440000
MED12   440000 perm   165 sec   (2668 perm/sec)   p_kst 3.000000e-04   p_cons 5.735477e-01   p_joint 4.590909e-04

Joint ci ratio: 2.737220e-01	ci left: 3.932668e-04	ci right 5.199765e-04	k: 204	n:450000
Cons ci ratio: 5.038994e-03	ci left: 5.720845e-01	ci right 5.749767e-01	k: 258089	n:450000
KS ci ratio: 3.373289e-01	ci left: 2.495019e-04	ci right 3.526672e-04	k: 134	n:450000
MED12   450000 perm   170 sec   (2645 perm/sec)   p_kst 2.977778e-04   p_cons 5.735311e-01   p_joint 4.533333e-04

Joint ci ratio: 2.723972e-01	ci left: 3.887676e-04	ci right 5.133176e-04	k: 206	n:460000
Cons ci ratio: 4.985125e-03	ci left: 5.719823e-01	ci right 5.748429e-01	k: 263770	n:460000
KS ci ratio: 3.360872e-01	ci left: 2.460680e-04	ci right 3.473577e-04	k: 135	n:460000
MED12   460000 perm   175 sec   (2622 perm/sec)   p_kst 2.934783e-04   p_cons 5.734130e-01   p_joint 4.478261e-04

Joint ci ratio: 2.685328e-01	ci left: 3.923965e-04	ci right 5.160253e-04	k: 212	n:470000
Cons ci ratio: 4.931659e-03	ci left: 5.720122e-01	ci right 5.748422e-01	k: 269511	n:470000
KS ci ratio: 3.324405e-01	ci left: 2.466798e-04	ci right 3.468838e-04	k: 138	n:470000
MED12   470000 perm   181 sec   (2596 perm/sec)   p_kst 2.936170e-04   p_cons 5.734277e-01   p_joint 4.510638e-04

Joint ci ratio: 2.660465e-01	ci left: 3.919965e-04	ci right 5.141653e-04	k: 216	n:480000
Cons ci ratio: 4.880127e-03	ci left: 5.720160e-01	ci right 5.748164e-01	k: 275240	n:480000
KS ci ratio: 3.300747e-01	ci left: 2.453608e-04	ci right 3.441691e-04	k: 140	n:480000
MED12   480000 perm   186 sec   (2574 perm/sec)   p_kst 2.916667e-04   p_cons 5.734167e-01   p_joint 4.500000e-04

Joint ci ratio: 2.636280e-01	ci left: 3.916179e-04	ci right 5.123761e-04	k: 220	n:490000
Cons ci ratio: 4.829593e-03	ci left: 5.720791e-01	ci right 5.748507e-01	k: 280998	n:490000
KS ci ratio: 3.266183e-01	ci left: 2.459713e-04	ci right 3.437705e-04	k: 143	n:490000
MED12   490000 perm   192 sec   (2553 perm/sec)   p_kst 2.918367e-04   p_cons 5.734653e-01   p_joint 4.489796e-04

Joint ci ratio: 2.897214e-01	ci left: 3.130440e-04	ci right 4.208840e-04	k: 182	n:500000
Cons ci ratio: 4.781829e-03	ci left: 5.720137e-01	ci right 5.747575e-01	k: 286693	n:500000
KS ci ratio: 3.232683e-01	ci left: 2.465625e-04	ci right 3.433828e-04	k: 146	n:500000
MED12   500000 perm   198 sec   (2531 perm/sec)   p_kst 2.920000e-04   p_cons 5.733860e-01   p_joint 3.640000e-04

Joint ci ratio: 2.881516e-01	ci left: 3.105432e-04	ci right 4.168364e-04	k: 184	n:510000
Cons ci ratio: 4.735074e-03	ci left: 5.719902e-01	ci right 5.747070e-01	k: 292408	n:510000
KS ci ratio: 3.221749e-01	ci left: 2.435298e-04	ci right 3.387690e-04	k: 147	n:510000
MED12   510000 perm   203 sec   (2511 perm/sec)   p_kst 2.882353e-04   p_cons 5.733490e-01   p_joint 3.607843e-04

Joint ci ratio: 2.866070e-01	ci left: 3.081401e-04	ci right 4.129431e-04	k: 186	n:520000
Cons ci ratio: 4.689702e-03	ci left: 5.719639e-01	ci right 5.746545e-01	k: 298121	n:520000
KS ci ratio: 3.200202e-01	ci left: 2.423827e-04	ci right 3.364094e-04	k: 149	n:520000
MED12   520000 perm   209 sec   (2489 perm/sec)   p_kst 2.865385e-04   p_cons 5.733096e-01   p_joint 3.576923e-04

Joint ci ratio: 2.843354e-01	ci left: 3.075813e-04	ci right 4.112163e-04	k: 189	n:530000
Cons ci ratio: 4.643817e-03	ci left: 5.721275e-01	ci right 5.747924e-01	k: 303934	n:530000
KS ci ratio: 3.200211e-01	ci left: 2.378094e-04	ci right 3.300622e-04	k: 149	n:530000
MED12   530000 perm   215 sec   (2466 perm/sec)   p_kst 2.811321e-04   p_cons 5.734604e-01   p_joint 3.566038e-04

Joint ci ratio: 2.813888e-01	ci left: 3.087674e-04	ci right 4.115326e-04	k: 193	n:540000
Cons ci ratio: 4.600263e-03	ci left: 5.721777e-01	ci right 5.748178e-01	k: 309689	n:540000
KS ci ratio: 3.158373e-01	ci left: 2.402219e-04	ci right 3.319463e-04	k: 153	n:540000
MED12   540000 perm   221 sec   (2444 perm/sec)   p_kst 2.833333e-04   p_cons 5.734981e-01   p_joint 3.574074e-04

Joint ci ratio: 2.771352e-01	ci left: 3.132988e-04	ci right 4.157210e-04	k: 199	n:550000
Cons ci ratio: 4.558149e-03	ci left: 5.722007e-01	ci right 5.748167e-01	k: 315430	n:550000
KS ci ratio: 3.118134e-01	ci left: 2.425543e-04	ci right 3.337545e-04	k: 157	n:550000
MED12   550000 perm   227 sec   (2424 perm/sec)   p_kst 2.854545e-04   p_cons 5.735091e-01   p_joint 3.618182e-04

Joint ci ratio: 2.744047e-01	ci left: 3.143532e-04	ci right 4.159329e-04	k: 203	n:560000
Cons ci ratio: 4.517550e-03	ci left: 5.721820e-01	ci right 5.747744e-01	k: 321148	n:560000
KS ci ratio: 3.098587e-01	ci left: 2.415159e-04	ci right 3.316438e-04	k: 159	n:560000
MED12   560000 perm   233 sec   (2404 perm/sec)   p_kst 2.839286e-04   p_cons 5.734786e-01   p_joint 3.625000e-04

Joint ci ratio: 2.711021e-01	ci left: 3.170104e-04	ci right 4.180061e-04	k: 208	n:570000
Cons ci ratio: 4.478033e-03	ci left: 5.721622e-01	ci right 5.747318e-01	k: 326865	n:570000
KS ci ratio: 3.051271e-01	ci left: 2.453740e-04	ci right 3.352720e-04	k: 164	n:570000
MED12   570000 perm   239 sec   (2385 perm/sec)   p_kst 2.877193e-04   p_cons 5.734474e-01   p_joint 3.649123e-04

Joint ci ratio: 2.685444e-01	ci left: 3.179747e-04	ci right 4.181610e-04	k: 212	n:580000
Cons ci ratio: 4.439065e-03	ci left: 5.721949e-01	ci right 5.747423e-01	k: 332612	n:580000
KS ci ratio: 3.014943e-01	ci left: 2.475153e-04	ci right 3.369111e-04	k: 168	n:580000
MED12   580000 perm   245 sec   (2367 perm/sec)   p_kst 2.896552e-04   p_cons 5.734690e-01   p_joint 3.655172e-04

Joint ci ratio: 2.672928e-01	ci left: 3.157474e-04	ci right 4.146906e-04	k: 214	n:590000
Cons ci ratio: 4.400076e-03	ci left: 5.723403e-01	ci right 5.748658e-01	k: 338426	n:590000
KS ci ratio: 2.997262e-01	ci left: 2.464543e-04	ci right 3.348455e-04	k: 170	n:590000
MED12   590000 perm   251 sec   (2347 perm/sec)   p_kst 2.881356e-04   p_cons 5.736034e-01   p_joint 3.627119e-04

Joint ci ratio: 2.648405e-01	ci left: 3.167070e-04	ci right 4.148894e-04	k: 218	n:600000
Cons ci ratio: 4.363806e-03	ci left: 5.722891e-01	ci right 5.747935e-01	k: 344125	n:600000
KS ci ratio: 2.962807e-01	ci left: 2.485151e-04	ci right 3.364283e-04	k: 174	n:600000
MED12   600000 perm   258 sec   (2326 perm/sec)   p_kst 2.900000e-04   p_cons 5.735417e-01   p_joint 3.633333e-04

Joint ci ratio: 2.636397e-01	ci left: 3.145766e-04	ci right 4.115834e-04	k: 220	n:610000
Cons ci ratio: 4.326604e-03	ci left: 5.724447e-01	ci right 5.749284e-01	k: 349949	n:610000
KS ci ratio: 2.954382e-01	ci left: 2.459587e-04	ci right 3.326738e-04	k: 175	n:610000
MED12   610000 perm   264 sec   (2308 perm/sec)   p_kst 2.868852e-04   p_cons 5.736869e-01   p_joint 3.606557e-04

Joint ci ratio: 2.624552e-01	ci left: 3.125159e-04	ci right 4.083830e-04	k: 222	n:620000
Cons ci ratio: 4.291074e-03	ci left: 5.725114e-01	ci right 5.749750e-01	k: 355721	n:620000
KS ci ratio: 2.937740e-01	ci left: 2.449790e-04	ci right 3.307717e-04	k: 177	n:620000
MED12   620000 perm   271 sec   (2290 perm/sec)   p_kst 2.854839e-04   p_cons 5.737435e-01   p_joint 3.580645e-04

Joint ci ratio: 2.578696e-01	ci left: 3.194259e-04	ci right 4.154251e-04	k: 230	n:630000
Cons ci ratio: 4.257813e-03	ci left: 5.724142e-01	ci right 5.748582e-01	k: 361391	n:630000
KS ci ratio: 2.881616e-01	ci left: 2.513909e-04	ci right 3.374408e-04	k: 184	n:630000
MED12   630000 perm   277 sec   (2271 perm/sec)   p_kst 2.920635e-04   p_cons 5.736365e-01   p_joint 3.650794e-04

Joint ci ratio: 2.556655e-01	ci left: 3.202827e-04	ci right 4.155854e-04	k: 234	n:640000
Cons ci ratio: 4.224814e-03	ci left: 5.723779e-01	ci right 5.748027e-01	k: 367098	n:640000
KS ci ratio: 2.858532e-01	ci left: 2.518131e-04	ci right 3.371923e-04	k: 187	n:640000
MED12   640000 perm   284 sec   (2254 perm/sec)   p_kst 2.921875e-04   p_cons 5.735906e-01   p_joint 3.656250e-04

Joint ci ratio: 2.540491e-01	ci left: 3.196758e-04	ci right 4.141014e-04	k: 237	n:650000
Cons ci ratio: 4.193718e-03	ci left: 5.722089e-01	ci right 5.746151e-01	k: 372718	n:650000
KS ci ratio: 2.843449e-01	ci left: 2.507960e-04	ci right 3.353011e-04	k: 189	n:650000
MED12   650000 perm   291 sec   (2237 perm/sec)   p_kst 2.907692e-04   p_cons 5.734123e-01   p_joint 3.646154e-04

Joint ci ratio: 2.509057e-01	ci left: 3.233480e-04	ci right 4.174920e-04	k: 243	n:660000
Cons ci ratio: 4.161274e-03	ci left: 5.722830e-01	ci right 5.746709e-01	k: 378495	n:660000
KS ci ratio: 2.799582e-01	ci left: 2.554439e-04	ci right 3.399531e-04	k: 195	n:660000
MED12   660000 perm   297 sec   (2221 perm/sec)   p_kst 2.954545e-04   p_cons 5.734773e-01   p_joint 3.681818e-04

Joint ci ratio: 2.503936e-01	ci left: 3.199207e-04	ci right 4.128469e-04	k: 244	n:670000
Cons ci ratio: 4.131499e-03	ci left: 5.721266e-01	ci right 5.744967e-01	k: 384119	n:670000
KS ci ratio: 2.792472e-01	ci left: 2.530191e-04	ci right 3.364761e-04	k: 196	n:670000
MED12   670000 perm   304 sec   (2203 perm/sec)   p_kst 2.925373e-04   p_cons 5.733119e-01   p_joint 3.641791e-04

Joint ci ratio: 2.493781e-01	ci left: 3.179729e-04	ci right 4.099007e-04	k: 246	n:680000
Cons ci ratio: 4.100492e-03	ci left: 5.721969e-01	ci right 5.745495e-01	k: 389894	n:680000
KS ci ratio: 2.785415e-01	ci left: 2.506659e-04	ci right 3.331012e-04	k: 197	n:680000
MED12   680000 perm   311 sec   (2184 perm/sec)   p_kst 2.897059e-04   p_cons 5.733735e-01   p_joint 3.617647e-04

Joint ci ratio: 2.483749e-01	ci left: 3.160823e-04	ci right 4.070391e-04	k: 248	n:690000
Cons ci ratio: 4.070401e-03	ci left: 5.722378e-01	ci right 5.745732e-01	k: 395650	n:690000
KS ci ratio: 2.778412e-01	ci left: 2.483812e-04	ci right 3.298238e-04	k: 198	n:690000
MED12   690000 perm   318 sec   (2168 perm/sec)   p_kst 2.869565e-04   p_cons 5.734058e-01   p_joint 3.594203e-04

Joint ci ratio: 2.449550e-01	ci left: 3.209489e-04	ci right 4.118410e-04	k: 255	n:700000
Cons ci ratio: 4.040692e-03	ci left: 5.723104e-01	ci right 5.746290e-01	k: 401429	n:700000
KS ci ratio: 2.750900e-01	ci left: 2.501512e-04	ci right 3.312214e-04	k: 202	n:700000
MED12   700000 perm   325 sec   (2153 perm/sec)   p_kst 2.885714e-04   p_cons 5.734700e-01   p_joint 3.642857e-04

Joint ci ratio: 2.435323e-01	ci left: 3.203953e-04	ci right 4.105239e-04	k: 258	n:710000
Cons ci ratio: 4.012536e-03	ci left: 5.722697e-01	ci right 5.745719e-01	k: 407129	n:710000
KS ci ratio: 2.737450e-01	ci left: 2.492510e-04	ci right 3.295666e-04	k: 204	n:710000
MED12   710000 perm   332 sec   (2138 perm/sec)   p_kst 2.873239e-04   p_cons 5.734211e-01   p_joint 3.633803e-04

Joint ci ratio: 2.425978e-01	ci left: 3.185539e-04	ci right 4.077689e-04	k: 260	n:720000
Cons ci ratio: 3.983751e-03	ci left: 5.723789e-01	ci right 5.746650e-01	k: 412936	n:720000
KS ci ratio: 2.724195e-01	ci left: 2.483768e-04	ci right 3.279568e-04	k: 206	n:720000
MED12   720000 perm   339 sec   (2122 perm/sec)   p_kst 2.861111e-04   p_cons 5.735222e-01   p_joint 3.611111e-04

Joint ci ratio: 2.416738e-01	ci left: 3.167636e-04	ci right 4.050887e-04	k: 262	n:730000
Cons ci ratio: 3.955853e-03	ci left: 5.724508e-01	ci right 5.747212e-01	k: 418718	n:730000
KS ci ratio: 2.711131e-01	ci left: 2.475274e-04	ci right 3.263902e-04	k: 208	n:730000
MED12   730000 perm   347 sec   (2105 perm/sec)   p_kst 2.849315e-04   p_cons 5.735863e-01   p_joint 3.589041e-04

Joint ci ratio: 2.403073e-01	ci left: 3.162923e-04	ci right 4.039129e-04	k: 265	n:740000
Cons ci ratio: 3.929401e-03	ci left: 5.724128e-01	ci right 5.746677e-01	k: 424420	n:740000
KS ci ratio: 2.698253e-01	ci left: 2.467018e-04	ci right 3.248651e-04	k: 210	n:740000
MED12   740000 perm   354 sec   (2089 perm/sec)   p_kst 2.837838e-04   p_cons 5.735405e-01   p_joint 3.581081e-04

Joint ci ratio: 2.363414e-01	ci left: 3.233587e-04	ci right 4.112424e-04	k: 274	n:750000
Cons ci ratio: 3.903270e-03	ci left: 5.724011e-01	ci right 5.746410e-01	k: 430141	n:750000
KS ci ratio: 2.660683e-01	ci left: 2.508752e-04	ci right 3.290696e-04	k: 216	n:750000
MED12   750000 perm   361 sec   (2075 perm/sec)   p_kst 2.880000e-04   p_cons 5.735213e-01   p_joint 3.653333e-04

Joint ci ratio: 2.359133e-01	ci left: 3.203419e-04	ci right 4.072249e-04	k: 275	n:760000
Cons ci ratio: 3.877122e-03	ci left: 5.724569e-01	ci right 5.746820e-01	k: 435913	n:760000
KS ci ratio: 2.654576e-01	ci left: 2.488023e-04	ci right 3.261430e-04	k: 217	n:760000
MED12   760000 perm   369 sec   (2060 perm/sec)   p_kst 2.855263e-04   p_cons 5.735697e-01   p_joint 3.618421e-04

Joint ci ratio: 2.333897e-01	ci left: 3.235158e-04	ci right 4.101856e-04	k: 281	n:770000
Cons ci ratio: 3.852106e-03	ci left: 5.724334e-01	ci right 5.746440e-01	k: 441625	n:770000
KS ci ratio: 2.618777e-01	ci left: 2.528484e-04	ci right 3.302133e-04	k: 223	n:770000
MED12   770000 perm   376 sec   (2047 perm/sec)   p_kst 2.896104e-04   p_cons 5.735390e-01   p_joint 3.649351e-04

Joint ci ratio: 2.317518e-01	ci left: 3.241976e-04	ci right 4.103533e-04	k: 285	n:780000
Cons ci ratio: 3.827067e-03	ci left: 5.724746e-01	ci right 5.746710e-01	k: 447387	n:780000
KS ci ratio: 2.601415e-01	ci left: 2.532013e-04	ci right 3.300770e-04	k: 226	n:780000
MED12   780000 perm   384 sec   (2033 perm/sec)   p_kst 2.897436e-04   p_cons 5.735731e-01   p_joint 3.653846e-04

Joint ci ratio: 2.309460e-01	ci left: 3.224787e-04	ci right 4.078371e-04	k: 287	n:790000
Cons ci ratio: 3.803001e-03	ci left: 5.724516e-01	ci right 5.746340e-01	k: 453099	n:790000
KS ci ratio: 2.595707e-01	ci left: 2.511796e-04	ci right 3.272470e-04	k: 227	n:790000
MED12   790000 perm   391 sec   (2019 perm/sec)   p_kst 2.873418e-04   p_cons 5.735430e-01   p_joint 3.632911e-04

Joint ci ratio: 2.285769e-01	ci left: 3.255162e-04	ci right 4.106700e-04	k: 293	n:800000
Cons ci ratio: 3.779316e-03	ci left: 5.724379e-01	ci right 5.746066e-01	k: 458818	n:800000
KS ci ratio: 2.573231e-01	ci left: 2.527160e-04	ci right 3.284795e-04	k: 231	n:800000
MED12   800000 perm   399 sec   (2005 perm/sec)   p_kst 2.887500e-04   p_cons 5.735225e-01   p_joint 3.662500e-04

Joint ci ratio: 2.266575e-01	ci left: 3.273184e-04	ci right 4.121241e-04	k: 298	n:810000
Cons ci ratio: 3.755784e-03	ci left: 5.724616e-01	ci right 5.746169e-01	k: 464567	n:810000
KS ci ratio: 2.556754e-01	ci left: 2.530617e-04	ci right 3.283655e-04	k: 234	n:810000
MED12   810000 perm   407 sec   (1992 perm/sec)   p_kst 2.888889e-04   p_cons 5.735395e-01   p_joint 3.679012e-04

Joint ci ratio: 2.244167e-01	ci left: 3.302304e-04	ci right 4.148279e-04	k: 304	n:820000
Cons ci ratio: 3.732789e-03	ci left: 5.724714e-01	ci right 5.746135e-01	k: 470305	n:820000
KS ci ratio: 2.529977e-01	ci left: 2.556845e-04	ci right 3.308464e-04	k: 239	n:820000
MED12   820000 perm   415 sec   (1978 perm/sec)   p_kst 2.914634e-04   p_cons 5.735427e-01   p_joint 3.707317e-04

Joint ci ratio: 2.236847e-01	ci left: 3.285261e-04	ci right 4.123747e-04	k: 306	n:830000
Cons ci ratio: 3.711600e-03	ci left: 5.722978e-01	ci right 5.744270e-01	k: 475891	n:830000
KS ci ratio: 2.524726e-01	ci left: 2.537324e-04	ci right 3.281413e-04	k: 240	n:830000
MED12   830000 perm   423 sec   (1964 perm/sec)   p_kst 2.891566e-04   p_cons 5.733627e-01   p_joint 3.686747e-04

Joint ci ratio: 2.215301e-01	ci left: 3.313598e-04	ci right 4.150059e-04	k: 312	n:840000
Cons ci ratio: 3.690003e-03	ci left: 5.722295e-01	ci right 5.743461e-01	k: 481562	n:840000
KS ci ratio: 2.498933e-01	ci left: 2.562896e-04	ci right 3.305611e-04	k: 245	n:840000
MED12   840000 perm   431 sec   (1951 perm/sec)   p_kst 2.916667e-04   p_cons 5.732881e-01   p_joint 3.714286e-04

Joint ci ratio: 2.187516e-01	ci left: 3.363544e-04	ci right 4.200532e-04	k: 320	n:850000
Cons ci ratio: 3.668267e-03	ci left: 5.722312e-01	ci right 5.743353e-01	k: 487291	n:850000
KS ci ratio: 2.469000e-01	ci left: 2.598939e-04	ci right 3.341694e-04	k: 251	n:850000
MED12   850000 perm   439 sec   (1938 perm/sec)   p_kst 2.952941e-04   p_cons 5.732835e-01   p_joint 3.764706e-04

Joint ci ratio: 2.177366e-01	ci left: 3.357410e-04	ci right 4.188476e-04	k: 323	n:860000
Cons ci ratio: 3.646720e-03	ci left: 5.722585e-01	ci right 5.743503e-01	k: 493042	n:860000
KS ci ratio: 2.459262e-01	ci left: 2.590539e-04	ci right 3.327526e-04	k: 253	n:860000
MED12   860000 perm   447 sec   (1924 perm/sec)   p_kst 2.941860e-04   p_cons 5.733047e-01   p_joint 3.755814e-04

Joint ci ratio: 2.160756e-01	ci left: 3.373168e-04	ci right 4.200921e-04	k: 328	n:870000
Cons ci ratio: 3.625472e-03	ci left: 5.722955e-01	ci right 5.743752e-01	k: 498802	n:870000
KS ci ratio: 2.440122e-01	ci left: 2.603918e-04	ci right 3.338072e-04	k: 257	n:870000
MED12   870000 perm   455 sec   (1912 perm/sec)   p_kst 2.954023e-04   p_cons 5.733356e-01   p_joint 3.770115e-04

Joint ci ratio: 2.131788e-01	ci left: 3.431614e-04	ci right 4.260943e-04	k: 337	n:880000
Cons ci ratio: 3.603804e-03	ci left: 5.724386e-01	ci right 5.745064e-01	k: 504656	n:880000
KS ci ratio: 2.403142e-01	ci left: 2.659722e-04	ci right 3.396553e-04	k: 265	n:880000
MED12   880000 perm   464 sec   (1898 perm/sec)   p_kst 3.011364e-04   p_cons 5.734727e-01   p_joint 3.829545e-04

Joint ci ratio: 2.110047e-01	ci left: 3.467531e-04	ci right 4.295890e-04	k: 344	n:890000
Cons ci ratio: 3.583293e-03	ci left: 5.724728e-01	ci right 5.745289e-01	k: 510416	n:890000
KS ci ratio: 2.385273e-01	ci left: 2.672086e-04	ci right 3.406024e-04	k: 269	n:890000
MED12   890000 perm   472 sec   (1886 perm/sec)   p_kst 3.022472e-04   p_cons 5.735011e-01   p_joint 3.865169e-04

Joint ci ratio: 2.091932e-01	ci left: 3.492163e-04	ci right 4.318326e-04	k: 350	n:900000
Cons ci ratio: 3.562772e-03	ci left: 5.725552e-01	ci right 5.745998e-01	k: 516220	n:900000
KS ci ratio: 2.372131e-01	ci left: 2.673743e-04	ci right 3.403495e-04	k: 272	n:900000
MED12   900000 perm   481 sec   (1873 perm/sec)   p_kst 3.022222e-04   p_cons 5.735778e-01   p_joint 3.888889e-04

Joint ci ratio: 2.086000e-01	ci left: 3.474615e-04	ci right 4.293999e-04	k: 352	n:910000
Cons ci ratio: 3.542790e-03	ci left: 5.726095e-01	ci right 5.746428e-01	k: 522000	n:910000
KS ci ratio: 2.367801e-01	ci left: 2.654697e-04	ci right 3.377735e-04	k: 273	n:910000
MED12   910000 perm   489 sec   (1861 perm/sec)   p_kst 3.000000e-04   p_cons 5.736264e-01   p_joint 3.868132e-04

Joint ci ratio: 2.071380e-01	ci left: 3.488367e-04	ci right 4.304497e-04	k: 357	n:920000
Cons ci ratio: 3.523634e-03	ci left: 5.725941e-01	ci right 5.746163e-01	k: 527717	n:920000
KS ci ratio: 2.354944e-01	ci left: 2.656521e-04	ci right 3.375555e-04	k: 276	n:920000
MED12   920000 perm   498 sec   (1849 perm/sec)   p_kst 3.000000e-04   p_cons 5.736054e-01   p_joint 3.880435e-04

Joint ci ratio: 2.054235e-01	ci left: 3.512042e-04	ci right 4.326056e-04	k: 363	n:930000
Cons ci ratio: 3.505271e-03	ci left: 5.725113e-01	ci right 5.745227e-01	k: 533371	n:930000
KS ci ratio: 2.329842e-01	ci left: 2.688687e-04	ci right 3.407553e-04	k: 282	n:930000
MED12   930000 perm   506 sec   (1837 perm/sec)   p_kst 3.032258e-04   p_cons 5.735172e-01   p_joint 3.903226e-04

Joint ci ratio: 2.040269e-01	ci left: 3.525144e-04	ci right 4.335948e-04	k: 368	n:940000
Cons ci ratio: 3.486524e-03	ci left: 5.725239e-01	ci right 5.745246e-01	k: 539113	n:940000
KS ci ratio: 2.309527e-01	ci left: 2.710185e-04	ci right 3.427579e-04	k: 287	n:940000
MED12   940000 perm   515 sec   (1825 perm/sec)   p_kst 3.053191e-04   p_cons 5.735245e-01   p_joint 3.914894e-04

Joint ci ratio: 2.032026e-01	ci left: 3.518006e-04	ci right 4.323494e-04	k: 371	n:950000
Cons ci ratio: 3.467620e-03	ci left: 5.726006e-01	ci right 5.745906e-01	k: 544916	n:950000
KS ci ratio: 2.297592e-01	ci left: 2.711414e-04	ci right 3.424898e-04	k: 290	n:950000
MED12   950000 perm   524 sec   (1815 perm/sec)   p_kst 3.052632e-04   p_cons 5.735958e-01   p_joint 3.905263e-04

Joint ci ratio: 2.023883e-01	ci left: 3.511024e-04	ci right 4.311292e-04	k: 374	n:960000
Cons ci ratio: 3.449857e-03	ci left: 5.725568e-01	ci right 5.745365e-01	k: 550605	n:960000
KS ci ratio: 2.289738e-01	ci left: 2.702806e-04	ci right 3.411250e-04	k: 292	n:960000
MED12   960000 perm   532 sec   (1804 perm/sec)   p_kst 3.041667e-04   p_cons 5.735469e-01   p_joint 3.895833e-04

Joint ci ratio: 2.010523e-01	ci left: 3.523771e-04	ci right 4.320992e-04	k: 379	n:970000
Cons ci ratio: 3.431576e-03	ci left: 5.726264e-01	ci right 5.745958e-01	k: 556403	n:970000
KS ci ratio: 2.270445e-01	ci left: 2.723545e-04	ci right 3.430568e-04	k: 297	n:970000
MED12   970000 perm   541 sec   (1792 perm/sec)   p_kst 3.061856e-04   p_cons 5.736113e-01   p_joint 3.907216e-04

Joint ci ratio: 2.002634e-01	ci left: 3.516888e-04	ci right 4.309049e-04	k: 382	n:980000
Cons ci ratio: 3.414537e-03	ci left: 5.725579e-01	ci right 5.745172e-01	k: 562067	n:980000
KS ci ratio: 2.262865e-01	ci left: 2.715003e-04	ci right 3.417127e-04	k: 299	n:980000
MED12   980000 perm   550 sec   (1780 perm/sec)   p_kst 3.051020e-04   p_cons 5.735378e-01   p_joint 3.897959e-04

Joint ci ratio: 1.994837e-01	ci left: 3.510150e-04	ci right 4.297341e-04	k: 385	n:990000
Cons ci ratio: 3.397552e-03	ci left: 5.725190e-01	ci right 5.744684e-01	k: 567759	n:990000
KS ci ratio: 2.255361e-01	ci left: 2.706637e-04	ci right 3.403954e-04	k: 301	n:990000
MED12   990000 perm   560 sec   (1769 perm/sec)   p_kst 3.040404e-04   p_cons 5.734939e-01   p_joint 3.888889e-04

Joint ci ratio: 1.982041e-01	ci left: 3.522560e-04	ci right 4.306853e-04	k: 390	n:1000000
Cons ci ratio: 3.380590e-03	ci left: 5.725139e-01	ci right 5.744536e-01	k: 573484	n:1000000
KS ci ratio: 2.244242e-01	ci left: 2.707880e-04	ci right 3.401602e-04	k: 304	n:1000000
MED12   1000000 perm   569 sec   (1758 perm/sec)   p_kst 3.040000e-04   p_cons 5.734840e-01   p_joint 3.900000e-04

Joint ci ratio: 1.969487e-01	ci left: 3.534739e-04	ci right 4.316161e-04	k: 395	n:1010000
Cons ci ratio: 3.364275e-03	ci left: 5.724516e-01	ci right 5.743817e-01	k: 579151	n:1010000
KS ci ratio: 2.229668e-01	ci left: 2.718455e-04	ci right 3.409742e-04	k: 308	n:1010000
MED12   1010000 perm   578 sec   (1748 perm/sec)   p_kst 3.049505e-04   p_cons 5.734168e-01   p_joint 3.910891e-04

Joint ci ratio: 1.952304e-01	ci left: 3.565344e-04	ci right 4.345838e-04	k: 402	n:1020000
Cons ci ratio: 3.347778e-03	ci left: 5.724513e-01	ci right 5.743719e-01	k: 584880	n:1020000
KS ci ratio: 2.211842e-01	ci left: 2.738096e-04	ci right 3.428055e-04	k: 313	n:1020000
MED12   1020000 perm   587 sec   (1738 perm/sec)   p_kst 3.068627e-04   p_cons 5.734118e-01   p_joint 3.941176e-04

Joint ci ratio: 1.933207e-01	ci left: 3.604622e-04	ci right 4.385087e-04	k: 410	n:1030000
Cons ci ratio: 3.331038e-03	ci left: 5.725219e-01	ci right 5.744331e-01	k: 590682	n:1030000
KS ci ratio: 2.197886e-01	ci left: 2.748203e-04	ci right 3.435749e-04	k: 317	n:1030000
MED12   1030000 perm   596 sec   (1727 perm/sec)   p_kst 3.077670e-04   p_cons 5.734777e-01   p_joint 3.980583e-04

Joint ci ratio: 1.923867e-01	ci left: 3.606566e-04	ci right 4.383239e-04	k: 414	n:1040000
Cons ci ratio: 3.315563e-03	ci left: 5.724411e-01	ci right 5.743431e-01	k: 596328	n:1040000
KS ci ratio: 2.184191e-01	ci left: 2.758129e-04	ci right 3.443281e-04	k: 321	n:1040000
MED12   1040000 perm   605 sec   (1718 perm/sec)   p_kst 3.086538e-04   p_cons 5.733923e-01   p_joint 3.980769e-04

Joint ci ratio: 1.914662e-01	ci left: 3.608483e-04	ci right 4.381418e-04	k: 418	n:1050000
Cons ci ratio: 3.300405e-03	ci left: 5.723466e-01	ci right 5.742396e-01	k: 601958	n:1050000
KS ci ratio: 2.170749e-01	ci left: 2.767879e-04	ci right 3.450658e-04	k: 325	n:1050000
MED12   1050000 perm   615 sec   (1708 perm/sec)   p_kst 3.095238e-04   p_cons 5.732933e-01   p_joint 3.980952e-04

Joint ci ratio: 1.905588e-01	ci left: 3.610372e-04	ci right 4.379622e-04	k: 422	n:1060000
Cons ci ratio: 3.284312e-03	ci left: 5.724238e-01	ci right 5.743078e-01	k: 607768	n:1060000
KS ci ratio: 2.160830e-01	ci left: 2.768534e-04	ci right 3.447939e-04	k: 328	n:1060000
MED12   1060000 perm   624 sec   (1698 perm/sec)   p_kst 3.094340e-04   p_cons 5.733660e-01   p_joint 3.981132e-04

Joint ci ratio: 1.885629e-01	ci left: 3.656752e-04	ci right 4.426788e-04	k: 431	n:1070000
Cons ci ratio: 3.268889e-03	ci left: 5.724342e-01	ci right 5.743094e-01	k: 613508	n:1070000
KS ci ratio: 2.141388e-01	ci left: 2.795714e-04	ci right 3.474806e-04	k: 334	n:1070000
MED12   1070000 perm   634 sec   (1689 perm/sec)   p_kst 3.121495e-04   p_cons 5.733720e-01   p_joint 4.028037e-04

Joint ci ratio: 1.881281e-01	ci left: 3.640538e-04	ci right 4.405191e-04	k: 433	n:1080000
Cons ci ratio: 3.253768e-03	ci left: 5.724314e-01	ci right 5.742979e-01	k: 619234	n:1080000
KS ci ratio: 2.141392e-01	ci left: 2.769828e-04	ci right 3.442632e-04	k: 334	n:1080000
MED12   1080000 perm   643 sec   (1679 perm/sec)   p_kst 3.092593e-04   p_cons 5.733648e-01   p_joint 4.009259e-04

Joint ci ratio: 1.872671e-01	ci left: 3.642112e-04	ci right 4.403196e-04	k: 437	n:1090000
Cons ci ratio: 3.238775e-03	ci left: 5.724406e-01	ci right 5.742985e-01	k: 624973	n:1090000
KS ci ratio: 2.128720e-01	ci left: 2.779152e-04	ci right 3.449705e-04	k: 338	n:1090000
MED12   1090000 perm   653 sec   (1669 perm/sec)   p_kst 3.100917e-04   p_cons 5.733697e-01   p_joint 4.009174e-04

Joint ci ratio: 1.866292e-01	ci left: 3.634998e-04	ci right 4.391714e-04	k: 440	n:1100000
Cons ci ratio: 3.223437e-03	ci left: 5.725333e-01	ci right 5.743827e-01	k: 630804	n:1100000
KS ci ratio: 2.119363e-01	ci left: 2.779709e-04	ci right 3.447065e-04	k: 341	n:1100000
MED12   1100000 perm   663 sec   (1660 perm/sec)   p_kst 3.100000e-04   p_cons 5.734582e-01   p_joint 4.000000e-04

Joint ci ratio: 1.857885e-01	ci left: 3.636606e-04	ci right 4.389863e-04	k: 444	n:1110000
Cons ci ratio: 3.208805e-03	ci left: 5.725496e-01	ci right 5.743906e-01	k: 636552	n:1110000
KS ci ratio: 2.110128e-01	ci left: 2.780262e-04	ci right 3.444467e-04	k: 344	n:1110000
MED12   1110000 perm   673 sec   (1650 perm/sec)   p_kst 3.099099e-04   p_cons 5.734703e-01   p_joint 4.000000e-04

Joint ci ratio: 1.847534e-01	ci left: 3.646709e-04	ci right 4.397379e-04	k: 449	n:1120000
Cons ci ratio: 3.194172e-03	ci left: 5.725959e-01	ci right 5.744287e-01	k: 642334	n:1120000
KS ci ratio: 2.095000e-01	ci left: 2.797731e-04	ci right 3.460702e-04	k: 349	n:1120000
MED12   1120000 perm   682 sec   (1642 perm/sec)   p_kst 3.116071e-04   p_cons 5.735125e-01   p_joint 4.008929e-04

Joint ci ratio: 1.841407e-01	ci left: 3.639760e-04	ci right 4.386237e-04	k: 452	n:1130000
Cons ci ratio: 3.180491e-03	ci left: 5.725255e-01	ci right 5.743502e-01	k: 647985	n:1130000
KS ci ratio: 2.086079e-01	ci left: 2.798131e-04	ci right 3.458013e-04	k: 352	n:1130000
MED12   1130000 perm   692 sec   (1632 perm/sec)   p_kst 3.115044e-04   p_cons 5.734381e-01   p_joint 4.000000e-04

Joint ci ratio: 1.831327e-01	ci left: 3.649676e-04	ci right 4.393635e-04	k: 457	n:1140000
Cons ci ratio: 3.166888e-03	ci left: 5.724713e-01	ci right 5.742880e-01	k: 653653	n:1140000
KS ci ratio: 2.071458e-01	ci left: 2.815163e-04	ci right 3.473819e-04	k: 357	n:1140000
MED12   1140000 perm   702 sec   (1623 perm/sec)   p_kst 3.131579e-04   p_cons 5.733798e-01   p_joint 4.008772e-04

Joint ci ratio: 1.825359e-01	ci left: 3.642833e-04	ci right 4.382709e-04	k: 460	n:1150000
Cons ci ratio: 3.152841e-03	ci left: 5.725137e-01	ci right 5.743224e-01	k: 659431	n:1150000
KS ci ratio: 2.065697e-01	ci left: 2.807174e-04	ci right 3.461903e-04	k: 359	n:1150000
MED12   1150000 perm   713 sec   (1614 perm/sec)   p_kst 3.121739e-04   p_cons 5.734183e-01   p_joint 4.000000e-04

Joint ci ratio: 1.823385e-01	ci left: 3.619656e-04	ci right 4.353942e-04	k: 461	n:1160000
Cons ci ratio: 3.139499e-03	ci left: 5.724743e-01	ci right 5.742753e-01	k: 665115	n:1160000
KS ci ratio: 2.062836e-01	ci left: 2.791149e-04	ci right 3.441125e-04	k: 360	n:1160000
MED12   1160000 perm   723 sec   (1605 perm/sec)   p_kst 3.103448e-04   p_cons 5.733750e-01   p_joint 3.974138e-04

Joint ci ratio: 1.815542e-01	ci left: 3.621349e-04	ci right 4.352472e-04	k: 465	n:1170000
Cons ci ratio: 3.126036e-03	ci left: 5.724810e-01	ci right 5.742742e-01	k: 670852	n:1170000
KS ci ratio: 2.054318e-01	ci left: 2.791612e-04	ci right 3.438675e-04	k: 363	n:1170000
MED12   1170000 perm   733 sec   (1597 perm/sec)   p_kst 3.102564e-04   p_cons 5.733778e-01   p_joint 3.974359e-04

Joint ci ratio: 1.800153e-01	ci left: 3.655389e-04	ci right 4.386447e-04	k: 473	n:1180000
Cons ci ratio: 3.112739e-03	ci left: 5.724884e-01	ci right 5.742740e-01	k: 676590	n:1180000
KS ci ratio: 2.034842e-01	ci left: 2.824240e-04	ci right 3.471888e-04	k: 370	n:1180000
MED12   1180000 perm   743 sec   (1588 perm/sec)   p_kst 3.135593e-04   p_cons 5.733814e-01   p_joint 4.008475e-04

Joint ci ratio: 1.788865e-01	ci left: 3.672828e-04	ci right 4.402268e-04	k: 479	n:1190000
Cons ci ratio: 3.099680e-03	ci left: 5.724847e-01	ci right 5.742628e-01	k: 682315	n:1190000
KS ci ratio: 2.018582e-01	ci left: 2.848369e-04	ci right 3.495687e-04	k: 376	n:1190000
MED12   1190000 perm   754 sec   (1579 perm/sec)   p_kst 3.159664e-04   p_cons 5.733739e-01   p_joint 4.025210e-04

Joint ci ratio: 1.783302e-01	ci left: 3.666103e-04	ci right 4.391700e-04	k: 482	n:1200000
Cons ci ratio: 3.086678e-03	ci left: 5.724978e-01	ci right 5.742685e-01	k: 688060	n:1200000
KS ci ratio: 2.010598e-01	ci left: 2.848371e-04	ci right 3.492816e-04	k: 379	n:1200000
MED12   1200000 perm   764 sec   (1570 perm/sec)   p_kst 3.158333e-04   p_cons 5.733833e-01   p_joint 4.016667e-04

Joint ci ratio: 1.779623e-01	ci left: 3.651596e-04	ci right 4.372670e-04	k: 484	n:1210000
Cons ci ratio: 3.073746e-03	ci left: 5.725256e-01	ci right 5.742889e-01	k: 693823	n:1210000
KS ci ratio: 2.005329e-01	ci left: 2.840529e-04	ci right 3.481308e-04	k: 381	n:1210000
MED12   1210000 perm   775 sec   (1561 perm/sec)   p_kst 3.148760e-04   p_cons 5.734074e-01   p_joint 4.000000e-04

Joint ci ratio: 1.766915e-01	ci left: 3.676496e-04	ci right 4.396749e-04	k: 491	n:1220000
Cons ci ratio: 3.061210e-03	ci left: 5.725152e-01	ci right 5.742713e-01	k: 699540	n:1220000
KS ci ratio: 1.987201e-01	ci left: 2.871755e-04	ci right 3.513014e-04	k: 388	n:1220000
MED12   1220000 perm   786 sec   (1553 perm/sec)   p_kst 3.180328e-04   p_cons 5.733934e-01   p_joint 4.024590e-04

Joint ci ratio: 1.759776e-01	ci left: 3.677691e-04	ci right 4.394957e-04	k: 495	n:1230000
Cons ci ratio: 3.048842e-03	ci left: 5.725026e-01	ci right 5.742515e-01	k: 705254	n:1230000
KS ci ratio: 1.977062e-01	ci left: 2.879314e-04	ci right 3.518585e-04	k: 392	n:1230000
MED12   1230000 perm   797 sec   (1544 perm/sec)   p_kst 3.186992e-04   p_cons 5.733772e-01   p_joint 4.024390e-04

Joint ci ratio: 1.752723e-01	ci left: 3.678872e-04	ci right 4.393189e-04	k: 499	n:1240000
Cons ci ratio: 3.036107e-03	ci left: 5.725733e-01	ci right 5.743151e-01	k: 711071	n:1240000
KS ci ratio: 1.969559e-01	ci left: 2.879092e-04	ci right 3.515596e-04	k: 395	n:1240000
MED12   1240000 perm   807 sec   (1536 perm/sec)   p_kst 3.185484e-04   p_cons 5.734444e-01   p_joint 4.024194e-04

Joint ci ratio: 1.742299e-01	ci left: 3.695342e-04	ci right 4.408140e-04	k: 505	n:1250000
Cons ci ratio: 3.023984e-03	ci left: 5.725692e-01	ci right 5.743040e-01	k: 716796	n:1250000
KS ci ratio: 1.957240e-01	ci left: 2.894093e-04	ci right 3.529435e-04	k: 400	n:1250000
MED12   1250000 perm   818 sec   (1528 perm/sec)   p_kst 3.200000e-04   p_cons 5.734368e-01   p_joint 4.040000e-04

Joint ci ratio: 1.730369e-01	ci left: 3.719155e-04	ci right 4.431122e-04	k: 512	n:1260000
Cons ci ratio: 3.011513e-03	ci left: 5.726454e-01	ci right 5.743733e-01	k: 722622	n:1260000
KS ci ratio: 1.947550e-01	ci left: 2.901319e-04	ci right 3.534719e-04	k: 404	n:1260000
MED12   1260000 perm   828 sec   (1521 perm/sec)   p_kst 3.206349e-04   p_cons 5.735095e-01   p_joint 4.063492e-04

Joint ci ratio: 1.727007e-01	ci left: 3.704937e-04	ci right 4.412660e-04	k: 514	n:1270000
Cons ci ratio: 2.999223e-03	ci left: 5.727157e-01	ci right 5.744367e-01	k: 728442	n:1270000
KS ci ratio: 1.942760e-01	ci left: 2.893455e-04	ci right 3.523401e-04	k: 406	n:1270000
MED12   1270000 perm   840 sec   (1513 perm/sec)   p_kst 3.196850e-04   p_cons 5.735764e-01   p_joint 4.047244e-04

Joint ci ratio: 1.723665e-01	ci left: 3.690942e-04	ci right 4.394486e-04	k: 516	n:1280000
Cons ci ratio: 2.987775e-03	ci left: 5.726716e-01	ci right 5.743859e-01	k: 734117	n:1280000
KS ci ratio: 1.940379e-01	ci left: 2.878282e-04	ci right 3.504067e-04	k: 407	n:1280000
MED12   1280000 perm   851 sec   (1505 perm/sec)   p_kst 3.179688e-04   p_cons 5.735289e-01   p_joint 4.031250e-04

Joint ci ratio: 1.720342e-01	ci left: 3.677166e-04	ci right 4.376592e-04	k: 518	n:1290000
Cons ci ratio: 2.975734e-03	ci left: 5.727468e-01	ci right 5.744544e-01	k: 739945	n:1290000
KS ci ratio: 1.938007e-01	ci left: 2.863345e-04	ci right 3.485031e-04	k: 408	n:1290000
MED12   1290000 perm   862 sec   (1497 perm/sec)   p_kst 3.162791e-04   p_cons 5.736008e-01   p_joint 4.015504e-04

Joint ci ratio: 1.715392e-01	ci left: 3.670965e-04	ci right 4.366994e-04	k: 521	n:1300000
Cons ci ratio: 2.964043e-03	ci left: 5.727870e-01	ci right 5.744880e-01	k: 745729	n:1300000
KS ci ratio: 1.933287e-01	ci left: 2.855959e-04	ci right 3.474353e-04	k: 410	n:1300000
MED12   1300000 perm   873 sec   (1488 perm/sec)   p_kst 3.153846e-04   p_cons 5.736377e-01   p_joint 4.007692e-04

Joint ci ratio: 1.712117e-01	ci left: 3.657554e-04	ci right 4.349580e-04	k: 523	n:1310000
Cons ci ratio: 2.952595e-03	ci left: 5.728091e-01	ci right 5.745036e-01	k: 751490	n:1310000
KS ci ratio: 1.928601e-01	ci left: 2.848686e-04	ci right 3.463836e-04	k: 412	n:1310000
MED12   1310000 perm   885 sec   (1481 perm/sec)   p_kst 3.145038e-04   p_cons 5.736565e-01   p_joint 3.992366e-04

Joint ci ratio: 1.704006e-01	ci left: 3.666105e-04	ci right 4.356125e-04	k: 528	n:1320000
Cons ci ratio: 2.941483e-03	ci left: 5.727967e-01	ci right 5.744848e-01	k: 757206	n:1320000
KS ci ratio: 1.919328e-01	ci left: 2.855949e-04	ci right 3.469355e-04	k: 416	n:1320000
MED12   1320000 perm   896 sec   (1473 perm/sec)   p_kst 3.151515e-04   p_cons 5.736409e-01   p_joint 4.000000e-04

Joint ci ratio: 1.699195e-01	ci left: 3.660136e-04	ci right 4.346888e-04	k: 531	n:1330000
Cons ci ratio: 2.929825e-03	ci left: 5.728966e-01	ci right 5.745783e-01	k: 763071	n:1330000
KS ci ratio: 1.912461e-01	ci left: 2.855950e-04	ci right 3.466907e-04	k: 419	n:1330000
MED12   1330000 perm   907 sec   (1466 perm/sec)   p_kst 3.150376e-04   p_cons 5.737376e-01   p_joint 3.992481e-04

Joint ci ratio: 1.689692e-01	ci left: 3.675699e-04	ci right 4.361122e-04	k: 537	n:1340000
Cons ci ratio: 2.918981e-03	ci left: 5.728815e-01	ci right 5.745569e-01	k: 768784	n:1340000
KS ci ratio: 1.903418e-01	ci left: 2.863062e-04	ci right 3.472309e-04	k: 423	n:1340000
MED12   1340000 perm   919 sec   (1458 perm/sec)   p_kst 3.156716e-04   p_cons 5.737194e-01   p_joint 4.007463e-04

Joint ci ratio: 1.680347e-01	ci left: 3.691042e-04	ci right 4.375134e-04	k: 543	n:1350000
Cons ci ratio: 2.908199e-03	ci left: 5.728764e-01	ci right 5.745455e-01	k: 774510	n:1350000
KS ci ratio: 1.892292e-01	ci left: 2.877132e-04	ci right 3.485383e-04	k: 428	n:1350000
MED12   1350000 perm   930 sec   (1451 perm/sec)   p_kst 3.170370e-04   p_cons 5.737111e-01   p_joint 4.022222e-04

Joint ci ratio: 1.674203e-01	ci left: 3.692079e-04	ci right 4.373609e-04	k: 547	n:1360000
Cons ci ratio: 2.897427e-03	ci left: 5.728897e-01	ci right 5.745527e-01	k: 780261	n:1360000
KS ci ratio: 1.883531e-01	ci left: 2.883998e-04	ci right 3.490555e-04	k: 432	n:1360000
MED12   1360000 perm   942 sec   (1444 perm/sec)   p_kst 3.176471e-04   p_cons 5.737213e-01   p_joint 4.022059e-04

Joint ci ratio: 1.669640e-01	ci left: 3.686111e-04	ci right 4.364498e-04	k: 550	n:1370000
Cons ci ratio: 2.886696e-03	ci left: 5.729159e-01	ci right 5.745728e-01	k: 786030	n:1370000
KS ci ratio: 1.877040e-01	ci left: 2.883814e-04	ci right 3.488004e-04	k: 435	n:1370000
MED12   1370000 perm   954 sec   (1436 perm/sec)   p_kst 3.175182e-04   p_cons 5.737445e-01   p_joint 4.014599e-04

Joint ci ratio: 1.659132e-01	ci left: 3.708012e-04	ci right 4.385706e-04	k: 557	n:1380000
Cons ci ratio: 2.876561e-03	ci left: 5.728606e-01	ci right 5.745115e-01	k: 791687	n:1380000
KS ci ratio: 1.862149e-01	ci left: 2.911268e-04	ci right 3.515824e-04	k: 442	n:1380000
MED12   1380000 perm   966 sec   (1429 perm/sec)   p_kst 3.202899e-04   p_cons 5.736862e-01   p_joint 4.036232e-04

Joint ci ratio: 1.653217e-01	ci left: 3.708920e-04	ci right 4.384123e-04	k: 561	n:1390000
Cons ci ratio: 2.866051e-03	ci left: 5.728882e-01	ci right 5.745331e-01	k: 797458	n:1390000
KS ci ratio: 1.857960e-01	ci left: 2.904042e-04	ci right 3.505588e-04	k: 444	n:1390000
MED12   1390000 perm   978 sec   (1422 perm/sec)   p_kst 3.194245e-04   p_cons 5.737108e-01   p_joint 4.035971e-04

Joint ci ratio: 1.645911e-01	ci left: 3.716668e-04	ci right 4.389995e-04	k: 566	n:1400000
Cons ci ratio: 2.855702e-03	ci left: 5.729075e-01	ci right 5.745465e-01	k: 803218	n:1400000
KS ci ratio: 1.849665e-01	ci left: 2.910545e-04	ci right 3.510444e-04	k: 448	n:1400000
MED12   1400000 perm   990 sec   (1415 perm/sec)   p_kst 3.200000e-04   p_cons 5.737271e-01   p_joint 4.042857e-04

Joint ci ratio: 1.637270e-01	ci left: 3.731114e-04	ci right 4.403160e-04	k: 572	n:1410000
Cons ci ratio: 2.845669e-03	ci left: 5.728910e-01	ci right 5.745243e-01	k: 808928	n:1410000
KS ci ratio: 1.837427e-01	ci left: 2.930492e-04	ci right 3.530062e-04	k: 454	n:1410000
MED12   1410000 perm   1001 sec   (1408 perm/sec)   p_kst 3.219858e-04   p_cons 5.737078e-01   p_joint 4.056738e-04

Joint ci ratio: 1.633001e-01	ci left: 3.725101e-04	ci right 4.394143e-04	k: 575	n:1420000
Cons ci ratio: 2.835702e-03	ci left: 5.728819e-01	ci right 5.745094e-01	k: 814648	n:1420000
KS ci ratio: 1.833403e-01	ci left: 2.923292e-04	ci right 3.519933e-04	k: 456	n:1420000
MED12   1420000 perm   1013 sec   (1401 perm/sec)   p_kst 3.211268e-04   p_cons 5.736958e-01   p_joint 4.049296e-04

Joint ci ratio: 1.627361e-01	ci left: 3.725882e-04	ci right 4.392526e-04	k: 579	n:1430000
Cons ci ratio: 2.825773e-03	ci left: 5.728841e-01	ci right 5.745059e-01	k: 820384	n:1430000
KS ci ratio: 1.825431e-01	ci left: 2.929541e-04	ci right 3.524570e-04	k: 460	n:1430000
MED12   1430000 perm   1025 sec   (1395 perm/sec)   p_kst 3.216783e-04   p_cons 5.736951e-01   p_joint 4.048951e-04

Joint ci ratio: 1.612141e-01	ci left: 3.773301e-04	ci right 4.441504e-04	k: 590	n:1440000
Cons ci ratio: 2.815548e-03	ci left: 5.729557e-01	ci right 5.745718e-01	k: 826220	n:1440000
KS ci ratio: 1.807865e-01	ci left: 2.968855e-04	ci right 3.565432e-04	k: 469	n:1440000
MED12   1440000 perm   1038 sec   (1388 perm/sec)   p_kst 3.256944e-04   p_cons 5.737639e-01   p_joint 4.097222e-04

Joint ci ratio: 1.606713e-01	ci left: 3.773754e-04	ci right 4.439570e-04	k: 594	n:1450000
Cons ci ratio: 2.805707e-03	ci left: 5.729787e-01	ci right 5.745893e-01	k: 831987	n:1450000
KS ci ratio: 1.800221e-01	ci left: 2.974721e-04	ci right 3.569673e-04	k: 473	n:1450000
MED12   1450000 perm   1050 sec   (1381 perm/sec)   p_kst 3.262069e-04   p_cons 5.737841e-01   p_joint 4.096552e-04

Joint ci ratio: 1.597343e-01	ci left: 3.793929e-04	ci right 4.459027e-04	k: 601	n:1460000
Cons ci ratio: 2.796664e-03	ci left: 5.728795e-01	ci right 5.744846e-01	k: 837576	n:1460000
KS ci ratio: 1.788932e-01	ci left: 2.993596e-04	ci right 3.588163e-04	k: 479	n:1460000
MED12   1460000 perm   1062 sec   (1374 perm/sec)   p_kst 3.280822e-04   p_cons 5.736822e-01   p_joint 4.116438e-04

Joint ci ratio: 1.588135e-01	ci left: 3.813842e-04	ci right 4.478209e-04	k: 608	n:1470000
Cons ci ratio: 2.787240e-03	ci left: 5.728640e-01	ci right 5.744636e-01	k: 843286	n:1470000
KS ci ratio: 1.777854e-01	ci left: 3.012226e-04	ci right 3.606390e-04	k: 485	n:1470000
MED12   1470000 perm   1075 sec   (1367 perm/sec)   p_kst 3.299320e-04   p_cons 5.736639e-01   p_joint 4.136054e-04

Joint ci ratio: 1.582945e-01	ci left: 3.814027e-04	ci right 4.476049e-04	k: 612	n:1480000
Cons ci ratio: 2.777698e-03	ci left: 5.728859e-01	ci right 5.744800e-01	k: 849051	n:1480000
KS ci ratio: 1.770582e-01	ci left: 3.017700e-04	ci right 3.610248e-04	k: 489	n:1480000
MED12   1480000 perm   1088 sec   (1361 perm/sec)   p_kst 3.304054e-04   p_cons 5.736831e-01   p_joint 4.135135e-04

Joint ci ratio: 1.579086e-01	ci left: 3.807767e-04	ci right 4.466939e-04	k: 615	n:1490000
Cons ci ratio: 2.768384e-03	ci left: 5.728846e-01	ci right 5.744735e-01	k: 854782	n:1490000
KS ci ratio: 1.765187e-01	ci left: 3.016691e-04	ci right 3.607043e-04	k: 492	n:1490000
MED12   1490000 perm   1100 sec   (1354 perm/sec)   p_kst 3.302013e-04   p_cons 5.736792e-01   p_joint 4.127517e-04

Joint ci ratio: 1.573984e-01	ci left: 3.807997e-04	ci right 4.464877e-04	k: 619	n:1500000
Cons ci ratio: 2.758876e-03	ci left: 5.729341e-01	ci right 5.745176e-01	k: 860589	n:1500000
KS ci ratio: 1.759840e-01	ci left: 3.015697e-04	ci right 3.603877e-04	k: 495	n:1500000
MED12   1500000 perm   1113 sec   (1348 perm/sec)   p_kst 3.300000e-04   p_cons 5.737260e-01   p_joint 4.126667e-04

Joint ci ratio: 1.573986e-01	ci left: 3.782778e-04	ci right 4.435309e-04	k: 619	n:1510000
Cons ci ratio: 2.749444e-03	ci left: 5.729869e-01	ci right 5.745651e-01	k: 866402	n:1510000
KS ci ratio: 1.759842e-01	ci left: 2.995725e-04	ci right 3.580011e-04	k: 495	n:1510000
MED12   1510000 perm   1126 sec   (1342 perm/sec)   p_kst 3.278146e-04   p_cons 5.737762e-01   p_joint 4.099338e-04

Joint ci ratio: 1.570192e-01	ci left: 3.776852e-04	ci right 4.426642e-04	k: 622	n:1520000
Cons ci ratio: 2.740174e-03	ci left: 5.730272e-01	ci right 5.746002e-01	k: 872197	n:1520000
KS ci ratio: 1.756306e-01	ci left: 2.988595e-04	ci right 3.570194e-04	k: 497	n:1520000
MED12   1520000 perm   1138 sec   (1335 perm/sec)   p_kst 3.269737e-04   p_cons 5.738138e-01   p_joint 4.092105e-04

Joint ci ratio: 1.563929e-01	ci left: 3.783565e-04	ci right 4.431669e-04	k: 627	n:1530000
Cons ci ratio: 2.731183e-03	ci left: 5.730336e-01	ci right 5.746014e-01	k: 877941	n:1530000
KS ci ratio: 1.752790e-01	ci left: 2.981560e-04	ci right 3.560505e-04	k: 499	n:1530000
MED12   1530000 perm   1151 sec   (1329 perm/sec)   p_kst 3.261438e-04   p_cons 5.738176e-01   p_joint 4.098039e-04

Joint ci ratio: 1.555283e-01	ci left: 3.802677e-04	ci right 4.450119e-04	k: 634	n:1540000
Cons ci ratio: 2.722284e-03	ci left: 5.730393e-01	ci right 5.746020e-01	k: 883684	n:1540000
KS ci ratio: 1.742366e-01	ci left: 2.999456e-04	ci right 3.578048e-04	k: 505	n:1540000
MED12   1540000 perm   1164 sec   (1323 perm/sec)   p_kst 3.279221e-04   p_cons 5.738208e-01   p_joint 4.116883e-04

Joint ci ratio: 1.551623e-01	ci left: 3.796746e-04	ci right 4.441515e-04	k: 637	n:1550000
Cons ci ratio: 2.713549e-03	ci left: 5.730307e-01	ci right 5.745884e-01	k: 889405	n:1550000
KS ci ratio: 1.737224e-01	ci left: 2.998617e-04	ci right 3.575161e-04	k: 508	n:1550000
MED12   1550000 perm   1177 sec   (1317 perm/sec)   p_kst 3.277419e-04   p_cons 5.738097e-01   p_joint 4.109677e-04

Joint ci ratio: 1.544377e-01	ci left: 3.809380e-04	ci right 4.452994e-04	k: 643	n:1560000
Cons ci ratio: 2.704853e-03	ci left: 5.730306e-01	ci right 5.745833e-01	k: 895139	n:1560000
KS ci ratio: 1.727073e-01	ci left: 3.016189e-04	ci right 3.592370e-04	k: 514	n:1560000
MED12   1560000 perm   1190 sec   (1311 perm/sec)   p_kst 3.294872e-04   p_cons 5.738071e-01   p_joint 4.121795e-04

Joint ci ratio: 1.541986e-01	ci left: 3.797363e-04	ci right 4.437862e-04	k: 645	n:1570000
Cons ci ratio: 2.696130e-03	ci left: 5.730502e-01	ci right 5.745979e-01	k: 900904	n:1570000
KS ci ratio: 1.723730e-01	ci left: 3.009167e-04	ci right 3.582778e-04	k: 516	n:1570000
MED12   1570000 perm   1203 sec   (1305 perm/sec)   p_kst 3.286624e-04   p_cons 5.738242e-01   p_joint 4.108280e-04

Joint ci ratio: 1.536052e-01	ci left: 3.803756e-04	ci right 4.442637e-04	k: 650	n:1580000
Cons ci ratio: 2.687405e-03	ci left: 5.730854e-01	ci right 5.746282e-01	k: 906694	n:1580000
KS ci ratio: 1.717099e-01	ci left: 3.014348e-04	ci right 3.586507e-04	k: 520	n:1580000
MED12   1580000 perm   1217 sec   (1299 perm/sec)   p_kst 3.291139e-04   p_cons 5.738570e-01   p_joint 4.113924e-04

Joint ci ratio: 1.529021e-01	ci left: 3.816122e-04	ci right 4.453878e-04	k: 656	n:1590000
Cons ci ratio: 2.678997e-03	ci left: 5.730774e-01	ci right 5.746154e-01	k: 912416	n:1590000
KS ci ratio: 1.713814e-01	ci left: 3.007428e-04	ci right 3.577069e-04	k: 522	n:1590000
MED12   1590000 perm   1230 sec   (1293 perm/sec)   p_kst 3.283019e-04   p_cons 5.738465e-01   p_joint 4.125786e-04

Joint ci ratio: 1.523236e-01	ci left: 3.822328e-04	ci right 4.458483e-04	k: 661	n:1600000
Cons ci ratio: 2.670751e-03	ci left: 5.730546e-01	ci right 5.745877e-01	k: 918114	n:1600000
KS ci ratio: 1.708920e-01	ci left: 3.006579e-04	ci right 3.574264e-04	k: 525	n:1600000
MED12   1600000 perm   1244 sec   (1287 perm/sec)   p_kst 3.281250e-04   p_cons 5.738212e-01   p_joint 4.131250e-04

Joint ci ratio: 1.517515e-01	ci left: 3.828461e-04	ci right 4.463027e-04	k: 666	n:1610000
Cons ci ratio: 2.662904e-03	ci left: 5.729723e-01	ci right 5.745007e-01	k: 923716	n:1610000
KS ci ratio: 1.704067e-01	ci left: 3.005742e-04	ci right 3.571493e-04	k: 528	n:1610000
MED12   1610000 perm   1257 sec   (1281 perm/sec)   p_kst 3.279503e-04   p_cons 5.737366e-01   p_joint 4.136646e-04

Joint ci ratio: 1.514114e-01	ci left: 3.822645e-04	ci right 4.454698e-04	k: 669	n:1620000
Cons ci ratio: 2.654972e-03	ci left: 5.729195e-01	ci right 5.744432e-01	k: 929364	n:1620000
KS ci ratio: 1.700856e-01	ci left: 2.999007e-04	ci right 3.562318e-04	k: 530	n:1620000
MED12   1620000 perm   1271 sec   (1275 perm/sec)   p_kst 3.271605e-04   p_cons 5.736815e-01   p_joint 4.129630e-04

Joint ci ratio: 1.508496e-01	ci left: 3.828708e-04	ci right 4.459202e-04	k: 674	n:1630000
Cons ci ratio: 2.646805e-03	ci left: 5.729238e-01	ci right 5.744428e-01	k: 935104	n:1630000
KS ci ratio: 1.694485e-01	ci left: 3.004106e-04	ci right 3.566045e-04	k: 534	n:1630000
MED12   1630000 perm   1285 sec   (1269 perm/sec)   p_kst 3.276074e-04   p_cons 5.736834e-01   p_joint 4.134969e-04

Joint ci ratio: 1.500733e-01	ci left: 3.846439e-04	ci right 4.476301e-04	k: 681	n:1640000
Cons ci ratio: 2.638818e-03	ci left: 5.729085e-01	ci right 5.744229e-01	k: 940812	n:1640000
KS ci ratio: 1.685061e-01	ci left: 3.020827e-04	ci right 3.582431e-04	k: 540	n:1640000
MED12   1640000 perm   1298 sec   (1263 perm/sec)   p_kst 3.292683e-04   p_cons 5.736659e-01   p_joint 4.152439e-04

Joint ci ratio: 1.493089e-01	ci left: 3.863962e-04	ci right 4.493183e-04	k: 688	n:1650000
Cons ci ratio: 2.630687e-03	ci left: 5.729335e-01	ci right 5.744432e-01	k: 946586	n:1650000
KS ci ratio: 1.677327e-01	ci left: 3.031547e-04	ci right 3.592296e-04	k: 545	n:1650000
MED12   1650000 perm   1312 sec   (1258 perm/sec)   p_kst 3.303030e-04   p_cons 5.736885e-01   p_joint 4.169697e-04

Joint ci ratio: 1.488774e-01	ci left: 3.863883e-04	ci right 4.491111e-04	k: 692	n:1660000
Cons ci ratio: 2.622693e-03	ci left: 5.729467e-01	ci right 5.744519e-01	k: 952341	n:1660000
KS ci ratio: 1.672738e-01	ci left: 3.030599e-04	ci right 3.589485e-04	k: 548	n:1660000
MED12   1660000 perm   1326 sec   (1252 perm/sec)   p_kst 3.301205e-04   p_cons 5.736994e-01   p_joint 4.168675e-04

Joint ci ratio: 1.480252e-01	ci left: 3.886871e-04	ci right 4.513899e-04	k: 700	n:1670000
Cons ci ratio: 2.614496e-03	ci left: 5.730112e-01	ci right 5.745119e-01	k: 958182	n:1670000
KS ci ratio: 1.665172e-01	ci left: 3.041142e-04	ci right 3.599181e-04	k: 553	n:1670000
MED12   1670000 perm   1340 sec   (1246 perm/sec)   p_kst 3.311377e-04   p_cons 5.737617e-01   p_joint 4.191617e-04

Joint ci ratio: 1.478146e-01	ci left: 3.875199e-04	ci right 4.499376e-04	k: 702	n:1680000
Cons ci ratio: 2.606693e-03	ci left: 5.730155e-01	ci right 5.745117e-01	k: 963923	n:1680000
KS ci ratio: 1.663672e-01	ci left: 3.028744e-04	ci right 3.583957e-04	k: 554	n:1680000
MED12   1680000 perm   1354 sec   (1241 perm/sec)   p_kst 3.297619e-04   p_cons 5.737637e-01   p_joint 4.178571e-04

Joint ci ratio: 1.476049e-01	ci left: 3.863666e-04	ci right 4.485024e-04	k: 704	n:1690000
Cons ci ratio: 2.598971e-03	ci left: 5.730173e-01	ci right 5.745091e-01	k: 969660	n:1690000
KS ci ratio: 1.660683e-01	ci left: 3.022164e-04	ci right 3.575077e-04	k: 556	n:1690000
MED12   1690000 perm   1368 sec   (1235 perm/sec)   p_kst 3.289941e-04   p_cons 5.737633e-01   p_joint 4.165680e-04

Joint ci ratio: 1.472919e-01	ci left: 3.857934e-04	ci right 4.476940e-04	k: 707	n:1700000
Cons ci ratio: 2.590673e-03	ci left: 5.731409e-01	ci right 5.746282e-01	k: 975604	n:1700000
KS ci ratio: 1.657710e-01	ci left: 3.015663e-04	ci right 3.566300e-04	k: 558	n:1700000
MED12   1700000 perm   1383 sec   (1230 perm/sec)   p_kst 3.282353e-04   p_cons 5.738847e-01   p_joint 4.158824e-04

Joint ci ratio: 1.467745e-01	ci left: 3.863537e-04	ci right 4.481073e-04	k: 712	n:1710000
Cons ci ratio: 2.583067e-03	ci left: 5.731467e-01	ci right 5.746297e-01	k: 981349	n:1710000
KS ci ratio: 1.650345e-01	ci left: 3.026057e-04	ci right 3.575893e-04	k: 563	n:1710000
MED12   1710000 perm   1397 sec   (1224 perm/sec)   p_kst 3.292398e-04   p_cons 5.738883e-01   p_joint 4.163743e-04

Joint ci ratio: 1.462625e-01	ci left: 3.869079e-04	ci right 4.485155e-04	k: 717	n:1720000
Cons ci ratio: 2.575599e-03	ci left: 5.731390e-01	ci right 5.746177e-01	k: 987071	n:1720000
KS ci ratio: 1.645973e-01	ci left: 3.025186e-04	ci right 3.573264e-04	k: 566	n:1720000
MED12   1720000 perm   1411 sec   (1219 perm/sec)   p_kst 3.290698e-04   p_cons 5.738785e-01   p_joint 4.168605e-04

Joint ci ratio: 1.459580e-01	ci left: 3.863421e-04	ci right 4.477204e-04	k: 720	n:1730000
Cons ci ratio: 2.568023e-03	ci left: 5.731644e-01	ci right 5.746388e-01	k: 992850	n:1730000
KS ci ratio: 1.641636e-01	ci left: 3.024327e-04	ci right 3.570663e-04	k: 569	n:1730000
MED12   1730000 perm   1426 sec   (1214 perm/sec)   p_kst 3.289017e-04   p_cons 5.739017e-01   p_joint 4.161850e-04

Joint ci ratio: 1.452544e-01	ci left: 3.879982e-04	ci right 4.493167e-04	k: 727	n:1740000
Cons ci ratio: 2.560554e-03	ci left: 5.731815e-01	ci right 5.746516e-01	k: 998615	n:1740000
KS ci ratio: 1.635906e-01	ci left: 3.028992e-04	ci right 3.574072e-04	k: 573	n:1740000
MED12   1740000 perm   1440 sec   (1209 perm/sec)   p_kst 3.293103e-04   p_cons 5.739167e-01   p_joint 4.178161e-04

Joint ci ratio: 1.452546e-01	ci left: 3.857811e-04	ci right 4.467492e-04	k: 727	n:1750000
Cons ci ratio: 2.553208e-03	ci left: 5.731875e-01	ci right 5.746534e-01	k: 1004361	n:1750000
KS ci ratio: 1.635908e-01	ci left: 3.011683e-04	ci right 3.553649e-04	k: 573	n:1750000
MED12   1750000 perm   1454 sec   (1203 perm/sec)   p_kst 3.274286e-04   p_cons 5.739206e-01   p_joint 4.154286e-04

Joint ci ratio: 1.444629e-01	ci left: 3.879699e-04	ci right 4.489209e-04	k: 735	n:1760000
Cons ci ratio: 2.545740e-03	ci left: 5.732287e-01	ci right 5.746904e-01	k: 1010169	n:1760000
KS ci ratio: 1.627423e-01	ci left: 3.027270e-04	ci right 3.568939e-04	k: 579	n:1760000
MED12   1760000 perm   1469 sec   (1198 perm/sec)   p_kst 3.289773e-04   p_cons 5.739597e-01   p_joint 4.176136e-04

Joint ci ratio: 1.440719e-01	ci left: 3.879563e-04	ci right 4.487261e-04	k: 739	n:1770000
Cons ci ratio: 2.538365e-03	ci left: 5.732643e-01	ci right 5.747219e-01	k: 1015968	n:1770000
KS ci ratio: 1.624625e-01	ci left: 3.021007e-04	ci right 3.560535e-04	k: 581	n:1770000
MED12   1770000 perm   1483 sec   (1193 perm/sec)   p_kst 3.282486e-04   p_cons 5.739932e-01   p_joint 4.175141e-04

Joint ci ratio: 1.228253e-01	ci left: 5.367779e-04	ci right 6.075601e-04	k: 1017	n:1780000
Cons ci ratio: 2.434461e-03	ci left: 5.922144e-01	ci right 5.936584e-01	k: 1055427	n:1780000
KS ci ratio: 1.620454e-01	ci left: 3.020204e-04	ci right 3.558069e-04	k: 584	n:1780000
MED12   1780000 perm   1498 sec   (1188 perm/sec)   p_kst 3.280899e-04   p_cons 5.929365e-01   p_joint 5.713483e-04

Joint ci ratio: 1.222858e-01	ci left: 5.386529e-04	ci right 6.093478e-04	k: 1026	n:1790000
Cons ci ratio: 2.427455e-03	ci left: 5.922553e-01	ci right 5.936952e-01	k: 1061426	n:1790000
KS ci ratio: 1.612206e-01	ci left: 3.035495e-04	ci right 3.573066e-04	k: 590	n:1790000
MED12   1790000 perm   1513 sec   (1183 perm/sec)   p_kst 3.296089e-04   p_cons 5.929754e-01   p_joint 5.731844e-04

Joint ci ratio: 1.424448e-01	ci left: 3.905963e-04	ci right 4.510300e-04	k: 756	n:1800000
Cons ci ratio: 2.420652e-03	ci left: 5.922674e-01	ci right 5.937034e-01	k: 1067374	n:1800000
KS ci ratio: 1.609485e-01	ci left: 3.029295e-04	ci right 3.564774e-04	k: 592	n:1800000
MED12   1800000 perm   1528 sec   (1178 perm/sec)   p_kst 3.288889e-04   p_cons 5.929856e-01   p_joint 4.200000e-04

Joint ci ratio: 1.419767e-01	ci left: 3.911025e-04	ci right 4.513987e-04	k: 761	n:1810000
Cons ci ratio: 2.414157e-03	ci left: 5.922292e-01	ci right 5.936611e-01	k: 1073231	n:1810000
KS ci ratio: 1.604084e-01	ci left: 3.033769e-04	ci right 3.568067e-04	k: 596	n:1810000
MED12   1810000 perm   1543 sec   (1173 perm/sec)   p_kst 3.292818e-04   p_cons 5.929453e-01   p_joint 4.204420e-04

Joint ci ratio: 1.209389e-01	ci left: 5.420271e-04	ci right 6.123252e-04	k: 1049	n:1820000
Cons ci ratio: 2.407410e-03	ci left: 5.922523e-01	ci right 5.936804e-01	k: 1079199	n:1820000
KS ci ratio: 1.597408e-01	ci left: 3.043472e-04	ci right 3.577034e-04	k: 601	n:1820000
MED12   1820000 perm   1558 sec   (1168 perm/sec)   p_kst 3.302198e-04   p_cons 5.929665e-01   p_joint 5.763736e-04

Joint ci ratio: 1.206520e-01	ci left: 5.417148e-04	ci right 6.117939e-04	k: 1054	n:1830000
Cons ci ratio: 2.400777e-03	ci left: 5.922637e-01	ci right 5.936879e-01	k: 1085146	n:1830000
KS ci ratio: 1.594762e-01	ci left: 3.037334e-04	ci right 3.568852e-04	k: 603	n:1830000
MED12   1830000 perm   1573 sec   (1163 perm/sec)   p_kst 3.295082e-04   p_cons 5.929760e-01   p_joint 5.759563e-04

Joint ci ratio: 1.201971e-01	ci left: 5.429876e-04	ci right 6.129476e-04	k: 1062	n:1840000
Cons ci ratio: 2.394154e-03	ci left: 5.922838e-01	ci right 5.937040e-01	k: 1091109	n:1840000
KS ci ratio: 1.589507e-01	ci left: 3.041699e-04	ci right 3.572061e-04	k: 607	n:1840000
MED12   1840000 perm   1588 sec   (1158 perm/sec)   p_kst 3.298913e-04   p_cons 5.929940e-01   p_joint 5.771739e-04

Joint ci ratio: 1.199716e-01	ci left: 5.421497e-04	ci right 6.118615e-04	k: 1066	n:1850000
Cons ci ratio: 2.387736e-03	ci left: 5.922733e-01	ci right 5.936897e-01	k: 1097016	n:1850000
KS ci ratio: 1.586899e-01	ci left: 3.035639e-04	ci right 3.563993e-04	k: 609	n:1850000
MED12   1850000 perm   1603 sec   (1154 perm/sec)   p_kst 3.291892e-04   p_cons 5.929816e-01   p_joint 5.762162e-04

Joint ci ratio: 1.194687e-01	ci left: 5.439288e-04	ci right 6.135554e-04	k: 1075	n:1860000
Cons ci ratio: 2.381255e-03	ci left: 5.922860e-01	ci right 5.936986e-01	k: 1102966	n:1860000
KS ci ratio: 1.577870e-01	ci left: 3.055463e-04	ci right 3.583955e-04	k: 616	n:1860000
MED12   1860000 perm   1618 sec   (1149 perm/sec)   p_kst 3.311828e-04   p_cons 5.929925e-01   p_joint 5.779570e-04

Joint ci ratio: 1.192473e-01	ci left: 5.430952e-04	ci right 6.124773e-04	k: 1079	n:1870000
Cons ci ratio: 2.374922e-03	ci left: 5.922794e-01	ci right 5.936882e-01	k: 1108880	n:1870000
KS ci ratio: 1.575320e-01	ci left: 3.049397e-04	ci right 3.575906e-04	k: 618	n:1870000
MED12   1870000 perm   1634 sec   (1145 perm/sec)   p_kst 3.304813e-04   p_cons 5.929840e-01   p_joint 5.770053e-04

Joint ci ratio: 1.189174e-01	ci left: 5.433029e-04	ci right 6.125059e-04	k: 1085	n:1880000
Cons ci ratio: 2.368646e-03	ci left: 5.922713e-01	ci right 5.936763e-01	k: 1114791	n:1880000
KS ci ratio: 1.568995e-01	ci left: 3.058726e-04	ci right 3.584526e-04	k: 623	n:1880000
MED12   1880000 perm   1649 sec   (1140 perm/sec)   p_kst 3.313830e-04   p_cons 5.929739e-01   p_joint 5.771277e-04

Joint ci ratio: 1.186447e-01	ci left: 5.429952e-04	ci right 6.119892e-04	k: 1090	n:1890000
Cons ci ratio: 2.362664e-03	ci left: 5.922135e-01	ci right 5.936148e-01	k: 1120608	n:1890000
KS ci ratio: 1.563990e-01	ci left: 3.062877e-04	ci right 3.587553e-04	k: 627	n:1890000
MED12   1890000 perm   1665 sec   (1135 perm/sec)   p_kst 3.317460e-04   p_cons 5.929143e-01   p_joint 5.767196e-04

Joint ci ratio: 1.183737e-01	ci left: 5.426908e-04	ci right 6.114778e-04	k: 1095	n:1900000
Cons ci ratio: 2.356456e-03	ci left: 5.922116e-01	ci right 5.936092e-01	k: 1126530	n:1900000
KS ci ratio: 1.562747e-01	ci left: 3.051813e-04	ci right 3.574141e-04	k: 628	n:1900000
MED12   1900000 perm   1681 sec   (1130 perm/sec)   p_kst 3.305263e-04   p_cons 5.929105e-01   p_joint 5.763158e-04

Joint ci ratio: 1.182660e-01	ci left: 5.408656e-04	ci right 6.093545e-04	k: 1097	n:1910000
Cons ci ratio: 2.350198e-03	ci left: 5.922301e-01	ci right 5.936241e-01	k: 1132491	n:1910000
KS ci ratio: 1.560269e-01	ci left: 3.045897e-04	ci right 3.566308e-04	k: 630	n:1910000
MED12   1910000 perm   1696 sec   (1126 perm/sec)   p_kst 3.298429e-04   p_cons 5.929272e-01   p_joint 5.743455e-04

Joint ci ratio: 1.179977e-01	ci left: 5.405758e-04	ci right 6.088618e-04	k: 1102	n:1920000
Cons ci ratio: 2.344048e-03	ci left: 5.922365e-01	ci right 5.936268e-01	k: 1138429	n:1920000
KS ci ratio: 1.556573e-01	ci left: 3.045049e-04	ci right 3.563967e-04	k: 633	n:1920000
MED12   1920000 perm   1712 sec   (1122 perm/sec)   p_kst 3.296875e-04   p_cons 5.929318e-01   p_joint 5.739583e-04

Joint ci ratio: 1.376209e-01	ci left: 3.912861e-04	ci right 4.496083e-04	k: 810	n:1930000
Cons ci ratio: 2.337827e-03	ci left: 5.922671e-01	ci right 5.936538e-01	k: 1144414	n:1930000
KS ci ratio: 1.552904e-01	ci left: 3.044211e-04	ci right 3.561649e-04	k: 636	n:1930000
MED12   1930000 perm   1727 sec   (1117 perm/sec)   p_kst 3.295337e-04   p_cons 5.929606e-01   p_joint 4.196891e-04

Joint ci ratio: 1.373671e-01	ci left: 3.907623e-04	ci right 4.488903e-04	k: 813	n:1940000
Cons ci ratio: 2.331691e-03	ci left: 5.922902e-01	ci right 5.936734e-01	k: 1150385	n:1940000
KS ci ratio: 1.551687e-01	ci left: 3.033473e-04	ci right 3.548645e-04	k: 637	n:1940000
MED12   1940000 perm   1743 sec   (1113 perm/sec)   p_kst 3.283505e-04   p_cons 5.929820e-01   p_joint 4.190722e-04

Joint ci ratio: 1.371147e-01	ci left: 3.902440e-04	ci right 4.481796e-04	k: 816	n:1950000
Cons ci ratio: 2.325618e-03	ci left: 5.923101e-01	ci right 5.936897e-01	k: 1156350	n:1950000
KS ci ratio: 1.548052e-01	ci left: 3.032705e-04	ci right 3.546428e-04	k: 640	n:1950000
MED12   1950000 perm   1759 sec   (1109 perm/sec)   p_kst 3.282051e-04   p_cons 5.930000e-01   p_joint 4.184615e-04

Joint ci ratio: 1.366139e-01	ci left: 3.912094e-04	ci right 4.490589e-04	k: 822	n:1960000
Cons ci ratio: 2.319687e-03	ci left: 5.923098e-01	ci right 5.936858e-01	k: 1162276	n:1960000
KS ci ratio: 1.543244e-01	ci left: 3.036851e-04	ci right 3.549531e-04	k: 644	n:1960000
MED12   1960000 perm   1775 sec   (1104 perm/sec)   p_kst 3.285714e-04   p_cons 5.929980e-01   p_joint 4.193878e-04

Joint ci ratio: 1.362831e-01	ci left: 3.911847e-04	ci right 4.488791e-04	k: 826	n:1970000
Cons ci ratio: 2.313817e-03	ci left: 5.923065e-01	ci right 5.936790e-01	k: 1168196	n:1970000
KS ci ratio: 1.538481e-01	ci left: 3.040957e-04	ci right 3.552600e-04	k: 648	n:1970000
MED12   1970000 perm   1791 sec   (1100 perm/sec)   p_kst 3.289340e-04   p_cons 5.929929e-01   p_joint 4.192893e-04

Joint ci ratio: 1.357099e-01	ci left: 3.926241e-04	ci right 4.502676e-04	k: 833	n:1980000
Cons ci ratio: 2.307983e-03	ci left: 5.923047e-01	ci right 5.936738e-01	k: 1174119	n:1980000
KS ci ratio: 1.533761e-01	ci left: 3.045024e-04	ci right 3.555635e-04	k: 652	n:1980000
MED12   1980000 perm   1807 sec   (1096 perm/sec)   p_kst 3.292929e-04   p_cons 5.929894e-01   p_joint 4.207071e-04

Joint ci ratio: 1.353856e-01	ci left: 3.925930e-04	ci right 4.500831e-04	k: 837	n:1990000
Cons ci ratio: 2.302078e-03	ci left: 5.923271e-01	ci right 5.936927e-01	k: 1180090	n:1990000
KS ci ratio: 1.529085e-01	ci left: 3.049053e-04	ci right 3.558638e-04	k: 656	n:1990000
MED12   1990000 perm   1823 sec   (1092 perm/sec)   p_kst 3.296482e-04   p_cons 5.930101e-01   p_joint 4.206030e-04

Joint ci ratio: 1.351440e-01	ci left: 3.920793e-04	ci right 4.493834e-04	k: 840	n:2000000
Cons ci ratio: 2.296397e-03	ci left: 5.923118e-01	ci right 5.936740e-01	k: 1185986	n:2000000
KS ci ratio: 1.525606e-01	ci left: 3.048234e-04	ci right 3.556417e-04	k: 659	n:2000000
MED12   2000000 perm   1839 sec   (1088 perm/sec)   p_kst 3.295000e-04   p_cons 5.929930e-01   p_joint 4.200000e-04

Joint ci ratio: 1.349836e-01	ci left: 3.910900e-04	ci right 4.481763e-04	k: 842	n:2010000
Cons ci ratio: 2.290779e-03	ci left: 5.922921e-01	ci right 5.936509e-01	k: 1191873	n:2010000
KS ci ratio: 1.524452e-01	ci left: 3.037854e-04	ci right 3.543889e-04	k: 660	n:2010000
MED12   2010000 perm   1856 sec   (1083 perm/sec)   p_kst 3.283582e-04   p_cons 5.929716e-01   p_joint 4.189055e-04

Joint ci ratio: 1.345851e-01	ci left: 3.915458e-04	ci right 4.485163e-04	k: 847	n:2020000
Cons ci ratio: 2.285103e-03	ci left: 5.922934e-01	ci right 5.936489e-01	k: 1197802	n:2020000
KS ci ratio: 1.519860e-01	ci left: 3.041863e-04	ci right 3.546900e-04	k: 664	n:2020000
MED12   2020000 perm   1872 sec   (1079 perm/sec)   p_kst 3.287129e-04   p_cons 5.929713e-01   p_joint 4.193069e-04

Joint ci ratio: 1.344267e-01	ci left: 3.905690e-04	ci right 4.473252e-04	k: 849	n:2030000
Cons ci ratio: 2.279407e-03	ci left: 5.923080e-01	ci right 5.936602e-01	k: 1203758	n:2030000
KS ci ratio: 1.517580e-01	ci left: 3.036356e-04	ci right 3.539654e-04	k: 666	n:2030000
MED12   2030000 perm   1888 sec   (1075 perm/sec)   p_kst 3.280788e-04   p_cons 5.929842e-01   p_joint 4.182266e-04

Joint ci ratio: 1.342689e-01	ci left: 3.896019e-04	ci right 4.461458e-04	k: 851	n:2040000
Cons ci ratio: 2.274007e-03	ci left: 5.922686e-01	ci right 5.936174e-01	k: 1209604	n:2040000
KS ci ratio: 1.516445e-01	ci left: 3.026188e-04	ci right 3.527391e-04	k: 667	n:2040000
MED12   2040000 perm   1905 sec   (1071 perm/sec)   p_kst 3.269608e-04   p_cons 5.929431e-01   p_joint 4.171569e-04

Joint ci ratio: 1.339548e-01	ci left: 3.895871e-04	ci right 4.459861e-04	k: 855	n:2050000
Cons ci ratio: 2.268608e-03	ci left: 5.922373e-01	ci right 5.935829e-01	k: 1215466	n:2050000
KS ci ratio: 1.514180e-01	ci left: 3.020812e-04	ci right 3.520310e-04	k: 669	n:2050000
MED12   2050000 perm   1921 sec   (1067 perm/sec)   p_kst 3.263415e-04   p_cons 5.929102e-01   p_joint 4.170732e-04

Joint ci ratio: 1.337987e-01	ci left: 3.886343e-04	ci right 4.448245e-04	k: 857	n:2060000
Cons ci ratio: 2.263080e-03	ci left: 5.922423e-01	ci right 5.935846e-01	k: 1221402	n:2060000
KS ci ratio: 1.511926e-01	ci left: 3.015489e-04	ci right 3.513297e-04	k: 671	n:2060000
MED12   2060000 perm   1938 sec   (1063 perm/sec)   p_kst 3.257282e-04   p_cons 5.929136e-01   p_joint 4.160194e-04

Joint ci ratio: 1.335654e-01	ci left: 3.881576e-04	ci right 4.441734e-04	k: 860	n:2070000
Cons ci ratio: 2.257783e-03	ci left: 5.922062e-01	ci right 5.935452e-01	k: 1227253	n:2070000
KS ci ratio: 1.508562e-01	ci left: 3.014867e-04	ci right 3.511365e-04	k: 674	n:2070000
MED12   2070000 perm   1955 sec   (1059 perm/sec)   p_kst 3.256039e-04   p_cons 5.928758e-01   p_joint 4.154589e-04

Joint ci ratio: 1.333334e-01	ci left: 3.876856e-04	ci right 4.435283e-04	k: 863	n:2080000
Cons ci ratio: 2.252537e-03	ci left: 5.921675e-01	ci right 5.935034e-01	k: 1233098	n:2080000
KS ci ratio: 1.506333e-01	ci left: 3.009625e-04	ci right 3.504461e-04	k: 676	n:2080000
MED12   2080000 perm   1972 sec   (1055 perm/sec)   p_kst 3.250000e-04   p_cons 5.928356e-01   p_joint 4.149038e-04

Joint ci ratio: 1.331794e-01	ci left: 3.867557e-04	ci right 4.423950e-04	k: 865	n:2090000
Cons ci ratio: 2.247120e-03	ci left: 5.921737e-01	ci right 5.935064e-01	k: 1239036	n:2090000
KS ci ratio: 1.504113e-01	ci left: 3.004434e-04	ci right 3.497623e-04	k: 678	n:2090000
MED12   2090000 perm   1989 sec   (1051 perm/sec)   p_kst 3.244019e-04   p_cons 5.928402e-01   p_joint 4.138756e-04

Joint ci ratio: 1.325684e-01	ci left: 3.885969e-04	ci right 4.442244e-04	k: 873	n:2100000
Cons ci ratio: 2.241800e-03	ci left: 5.921675e-01	ci right 5.934970e-01	k: 1244948	n:2100000
KS ci ratio: 1.497510e-01	ci left: 3.017626e-04	ci right 3.510611e-04	k: 684	n:2100000
MED12   2100000 perm   2006 sec   (1047 perm/sec)   p_kst 3.257143e-04   p_cons 5.928324e-01   p_joint 4.157143e-04

Joint ci ratio: 1.322660e-01	ci left: 3.885882e-04	ci right 4.440776e-04	k: 877	n:2110000
Cons ci ratio: 2.236374e-03	ci left: 5.921922e-01	ci right 5.935185e-01	k: 1250925	n:2110000
KS ci ratio: 1.494242e-01	ci left: 3.017010e-04	ci right 3.508723e-04	k: 687	n:2110000
MED12   2110000 perm   2023 sec   (1043 perm/sec)   p_kst 3.255924e-04   p_cons 5.928555e-01   p_joint 4.156398e-04

Joint ci ratio: 1.317418e-01	ci left: 3.899481e-04	ci right 4.453937e-04	k: 884	n:2120000
Cons ci ratio: 2.231010e-03	ci left: 5.922119e-01	ci right 5.935350e-01	k: 1256892	n:2120000
KS ci ratio: 1.487768e-01	ci left: 3.030025e-04	ci right 3.521529e-04	k: 693	n:2120000
MED12   2120000 perm   2040 sec   (1039 perm/sec)   p_kst 3.268868e-04   p_cons 5.928736e-01   p_joint 4.169811e-04

Joint ci ratio: 1.312238e-01	ci left: 3.912956e-04	ci right 4.466971e-04	k: 891	n:2130000
Cons ci ratio: 2.225625e-03	ci left: 5.922441e-01	ci right 5.935641e-01	k: 1262886	n:2130000
KS ci ratio: 1.480320e-01	ci left: 3.047443e-04	ci right 3.539079e-04	k: 700	n:2130000
MED12   2130000 perm   2057 sec   (1035 perm/sec)   p_kst 3.286385e-04   p_cons 5.929042e-01   p_joint 4.183099e-04

Joint ci ratio: 1.307118e-01	ci left: 3.926310e-04	ci right 4.479878e-04	k: 898	n:2140000
Cons ci ratio: 2.220516e-03	ci left: 5.922246e-01	ci right 5.935415e-01	k: 1268770	n:2140000
KS ci ratio: 1.472982e-01	ci left: 3.064705e-04	ci right 3.556459e-04	k: 707	n:2140000
MED12   2140000 perm   2074 sec   (1032 perm/sec)   p_kst 3.303738e-04   p_cons 5.928832e-01   p_joint 4.196262e-04

Joint ci ratio: 1.117401e-01	ci left: 5.401206e-04	ci right 6.044928e-04	k: 1229	n:2150000
Cons ci ratio: 2.215322e-03	ci left: 5.922313e-01	ci right 5.935452e-01	k: 1274710	n:2150000
KS ci ratio: 1.469871e-01	ci left: 3.063890e-04	ci right 3.554384e-04	k: 710	n:2150000
MED12   2150000 perm   2092 sec   (1028 perm/sec)   p_kst 3.302326e-04   p_cons 5.928884e-01   p_joint 5.716279e-04

Joint ci ratio: 1.114235e-01	ci left: 5.407704e-04	ci right 6.050253e-04	k: 1236	n:2160000
Cons ci ratio: 2.210146e-03	ci left: 5.922421e-01	ci right 5.935530e-01	k: 1280659	n:2160000
KS ci ratio: 1.468840e-01	ci left: 3.054165e-04	ci right 3.542729e-04	k: 711	n:2160000
MED12   2160000 perm   2110 sec   (1024 perm/sec)   p_kst 3.291667e-04   p_cons 5.928977e-01   p_joint 5.722222e-04

Joint ci ratio: 1.112438e-01	ci left: 5.400703e-04	ci right 6.041318e-04	k: 1240	n:2170000
Cons ci ratio: 2.205032e-03	ci left: 5.922469e-01	ci right 5.935547e-01	k: 1286595	n:2170000
KS ci ratio: 1.464731e-01	ci left: 3.057847e-04	ci right 3.545512e-04	k: 715	n:2170000
MED12   2170000 perm   2127 sec   (1020 perm/sec)   p_kst 3.294931e-04   p_cons 5.929009e-01   p_joint 5.714286e-04

Joint ci ratio: 1.110650e-01	ci left: 5.393768e-04	ci right 6.032464e-04	k: 1244	n:2180000
Cons ci ratio: 2.200026e-03	ci left: 5.922360e-01	ci right 5.935408e-01	k: 1292497	n:2180000
KS ci ratio: 1.460656e-01	ci left: 3.061497e-04	ci right 3.548268e-04	k: 719	n:2180000
MED12   2180000 perm   2144 sec   (1017 perm/sec)   p_kst 3.298165e-04   p_cons 5.928885e-01   p_joint 5.706422e-04

Joint ci ratio: 1.106656e-01	ci left: 5.409095e-04	ci right 6.047154e-04	k: 1253	n:2190000
Cons ci ratio: 2.195053e-03	ci left: 5.922252e-01	ci right 5.935270e-01	k: 1298399	n:2190000
KS ci ratio: 1.454607e-01	ci left: 3.073916e-04	ci right 3.560461e-04	k: 725	n:2190000
MED12   2190000 perm   2162 sec   (1013 perm/sec)   p_kst 3.310502e-04   p_cons 5.928763e-01   p_joint 5.721461e-04

Joint ci ratio: 1.104457e-01	ci left: 5.406607e-04	ci right 6.043022e-04	k: 1258	n:2200000
Cons ci ratio: 2.190008e-03	ci left: 5.922377e-01	ci right 5.935366e-01	k: 1304352	n:2200000
KS ci ratio: 1.450616e-01	ci left: 3.077465e-04	ci right 3.563119e-04	k: 729	n:2200000
MED12   2200000 perm   2179 sec   (1010 perm/sec)   p_kst 3.313636e-04   p_cons 5.928873e-01   p_joint 5.718182e-04

Joint ci ratio: 1.102707e-01	ci left: 5.399743e-04	ci right 6.034277e-04	k: 1262	n:2210000
Cons ci ratio: 2.185134e-03	ci left: 5.922202e-01	ci right 5.935162e-01	k: 1310239	n:2210000
KS ci ratio: 1.448633e-01	ci left: 3.072261e-04	ci right 3.556374e-04	k: 731	n:2210000
MED12   2210000 perm   2197 sec   (1006 perm/sec)   p_kst 3.307692e-04   p_cons 5.928683e-01   p_joint 5.710407e-04

Joint ci ratio: 1.098798e-01	ci left: 5.414844e-04	ci right 6.048752e-04	k: 1271	n:2220000
Cons ci ratio: 2.180308e-03	ci left: 5.921993e-01	ci right 5.934923e-01	k: 1316118	n:2220000
KS ci ratio: 1.442732e-01	ci left: 3.084472e-04	ci right 3.568358e-04	k: 737	n:2220000
MED12   2220000 perm   2215 sec   (1002 perm/sec)   p_kst 3.319820e-04   p_cons 5.928459e-01   p_joint 5.725225e-04

Joint ci ratio: 1.097075e-01	ci left: 5.408007e-04	ci right 6.040057e-04	k: 1275	n:2230000
Cons ci ratio: 2.175441e-03	ci left: 5.921947e-01	ci right 5.934848e-01	k: 1322033	n:2230000
KS ci ratio: 1.441756e-01	ci left: 3.074962e-04	ci right 3.557003e-04	k: 738	n:2230000
MED12   2230000 perm   2233 sec   (999 perm/sec)   p_kst 3.309417e-04   p_cons 5.928399e-01   p_joint 5.717489e-04

Joint ci ratio: 1.092800e-01	ci left: 5.427285e-04	ci right 6.058957e-04	k: 1285	n:2240000
Cons ci ratio: 2.170667e-03	ci left: 5.921768e-01	ci right 5.934640e-01	k: 1327918	n:2240000
KS ci ratio: 1.434975e-01	ci left: 3.091360e-04	ci right 3.573497e-04	k: 745	n:2240000
MED12   2240000 perm   2251 sec   (995 perm/sec)   p_kst 3.325893e-04   p_cons 5.928205e-01   p_joint 5.736607e-04

Joint ci ratio: 1.091528e-01	ci left: 5.416133e-04	ci right 6.045726e-04	k: 1288	n:2250000
Cons ci ratio: 2.165768e-03	ci left: 5.921937e-01	ci right 5.934781e-01	k: 1333881	n:2250000
KS ci ratio: 1.434015e-01	ci left: 3.081906e-04	ci right 3.562219e-04	k: 746	n:2250000
MED12   2250000 perm   2269 sec   (992 perm/sec)   p_kst 3.315556e-04   p_cons 5.928360e-01   p_joint 5.724444e-04

Joint ci ratio: 1.090261e-01	ci left: 5.405079e-04	ci right 6.032612e-04	k: 1291	n:2260000
Cons ci ratio: 2.161000e-03	ci left: 5.921888e-01	ci right 5.934703e-01	k: 1339795	n:2260000
KS ci ratio: 1.433056e-01	ci left: 3.072535e-04	ci right 3.551040e-04	k: 747	n:2260000
MED12   2260000 perm   2287 sec   (988 perm/sec)   p_kst 3.305310e-04   p_cons 5.928296e-01   p_joint 5.712389e-04

Joint ci ratio: 1.087738e-01	ci left: 5.406980e-04	ci right 6.033188e-04	k: 1297	n:2270000
Cons ci ratio: 2.156269e-03	ci left: 5.921826e-01	ci right 5.934613e-01	k: 1345706	n:2270000
KS ci ratio: 1.429240e-01	ci left: 3.075990e-04	ci right 3.553649e-04	k: 751	n:2270000
MED12   2270000 perm   2305 sec   (985 perm/sec)   p_kst 3.308370e-04   p_cons 5.928220e-01   p_joint 5.713656e-04

Joint ci ratio: 1.086067e-01	ci left: 5.400332e-04	ci right 6.024747e-04	k: 1301	n:2280000
Cons ci ratio: 2.151469e-03	ci left: 5.921988e-01	ci right 5.934747e-01	k: 1351668	n:2280000
KS ci ratio: 1.426398e-01	ci left: 3.075187e-04	ci right 3.551690e-04	k: 754	n:2280000
MED12   2280000 perm   2323 sec   (982 perm/sec)   p_kst 3.307018e-04   p_cons 5.928368e-01   p_joint 5.706140e-04

Joint ci ratio: 1.082745e-01	ci left: 5.410737e-04	ci right 6.034319e-04	k: 1309	n:2290000
Cons ci ratio: 2.146678e-03	ci left: 5.922201e-01	ci right 5.934932e-01	k: 1357642	n:2290000
KS ci ratio: 1.420762e-01	ci left: 3.087026e-04	ci right 3.563314e-04	k: 760	n:2290000
MED12   2290000 perm   2341 sec   (978 perm/sec)   p_kst 3.318777e-04   p_cons 5.928568e-01   p_joint 5.716157e-04

Joint ci ratio: 1.081920e-01	ci left: 5.395672e-04	ci right 6.017014e-04	k: 1311	n:2300000
Cons ci ratio: 2.142159e-03	ci left: 5.921869e-01	ci right 5.934572e-01	k: 1363491	n:2300000
KS ci ratio: 1.420763e-01	ci left: 3.073604e-04	ci right 3.547821e-04	k: 760	n:2300000
MED12   2300000 perm   2360 sec   (975 perm/sec)   p_kst 3.304348e-04   p_cons 5.928222e-01   p_joint 5.700000e-04

Joint ci ratio: 1.080686e-01	ci left: 5.384950e-04	ci right 6.004305e-04	k: 1314	n:2310000
Cons ci ratio: 2.137453e-03	ci left: 5.922029e-01	ci right 5.934705e-01	k: 1369453	n:2310000
KS ci ratio: 1.419832e-01	ci left: 3.064473e-04	ci right 3.536946e-04	k: 761	n:2310000
MED12   2310000 perm   2379 sec   (971 perm/sec)   p_kst 3.294372e-04   p_cons 5.928368e-01   p_joint 5.688312e-04

Joint ci ratio: 1.077821e-01	ci left: 5.391097e-04	ci right 6.009411e-04	k: 1321	n:2320000
Cons ci ratio: 2.132880e-03	ci left: 5.921955e-01	ci right 5.934603e-01	k: 1375361	n:2320000
KS ci ratio: 1.415196e-01	ci left: 3.072052e-04	ci right 3.544016e-04	k: 766	n:2320000
MED12   2320000 perm   2398 sec   (968 perm/sec)   p_kst 3.301724e-04   p_cons 5.928280e-01   p_joint 5.693966e-04

Joint ci ratio: 1.076194e-01	ci left: 5.384664e-04	ci right 6.001249e-04	k: 1325	n:2330000
Cons ci ratio: 2.128391e-03	ci left: 5.921757e-01	ci right 5.934378e-01	k: 1381240	n:2330000
KS ci ratio: 1.411520e-01	ci left: 3.075427e-04	ci right 3.546579e-04	k: 770	n:2330000
MED12   2330000 perm   2416 sec   (964 perm/sec)   p_kst 3.304721e-04   p_cons 5.928069e-01   p_joint 5.686695e-04

Joint ci ratio: 1.073364e-01	ci left: 5.390763e-04	ci right 6.006321e-04	k: 1332	n:2340000
Cons ci ratio: 2.123777e-03	ci left: 5.921911e-01	ci right 5.934505e-01	k: 1387201	n:2340000
KS ci ratio: 1.406964e-01	ci left: 3.082899e-04	ci right 3.553543e-04	k: 775	n:2340000
MED12   2340000 perm   2434 sec   (961 perm/sec)   p_kst 3.311966e-04   p_cons 5.928209e-01   p_joint 5.692308e-04

Joint ci ratio: 1.071357e-01	ci left: 5.388530e-04	ci right 6.002609e-04	k: 1337	n:2350000
Cons ci ratio: 2.119310e-03	ci left: 5.921796e-01	ci right 5.934363e-01	k: 1393099	n:2350000
KS ci ratio: 1.405155e-01	ci left: 3.077991e-04	ci right 3.547232e-04	k: 777	n:2350000
MED12   2350000 perm   2454 sec   (958 perm/sec)   p_kst 3.306383e-04   p_cons 5.928081e-01   p_joint 5.689362e-04

Joint ci ratio: 1.068963e-01	ci left: 5.390440e-04	ci right 6.003278e-04	k: 1343	n:2360000
Cons ci ratio: 2.114882e-03	ci left: 5.921656e-01	ci right 5.934197e-01	k: 1398991	n:2360000
KS ci ratio: 1.403353e-01	ci left: 3.073125e-04	ci right 3.540973e-04	k: 779	n:2360000
MED12   2360000 perm   2473 sec   (954 perm/sec)   p_kst 3.300847e-04   p_cons 5.927928e-01   p_joint 5.690678e-04

Joint ci ratio: 1.066980e-01	ci left: 5.388229e-04	ci right 5.999609e-04	k: 1348	n:2370000
Cons ci ratio: 2.110485e-03	ci left: 5.921510e-01	ci right 5.934024e-01	k: 1404881	n:2370000
KS ci ratio: 1.398876e-01	ci left: 3.080516e-04	ci right 3.547868e-04	k: 784	n:2370000
MED12   2370000 perm   2491 sec   (951 perm/sec)   p_kst 3.308017e-04   p_cons 5.927768e-01   p_joint 5.687764e-04

Joint ci ratio: 1.063438e-01	ci left: 5.402398e-04	ci right 6.013222e-04	k: 1357	n:2380000
Cons ci ratio: 2.105959e-03	ci left: 5.921725e-01	ci right 5.934213e-01	k: 1410857	n:2380000
KS ci ratio: 1.394442e-01	ci left: 3.087847e-04	ci right 3.554703e-04	k: 789	n:2380000
MED12   2380000 perm   2511 sec   (948 perm/sec)   p_kst 3.315126e-04   p_cons 5.927971e-01   p_joint 5.701681e-04

Joint ci ratio: 1.061486e-01	ci left: 5.400158e-04	ci right 6.009538e-04	k: 1362	n:2390000
Cons ci ratio: 2.101452e-03	ci left: 5.921960e-01	ci right 5.934422e-01	k: 1416838	n:2390000
KS ci ratio: 1.392680e-01	ci left: 3.083004e-04	ci right 3.548490e-04	k: 791	n:2390000
MED12   2390000 perm   2530 sec   (945 perm/sec)   p_kst 3.309623e-04   p_cons 5.928192e-01   p_joint 5.698745e-04

Joint ci ratio: 1.059932e-01	ci left: 5.393882e-04	ci right 6.001607e-04	k: 1366	n:2400000
Cons ci ratio: 2.097163e-03	ci left: 5.921756e-01	ci right 5.934192e-01	k: 1422714	n:2400000
KS ci ratio: 1.389176e-01	ci left: 3.086245e-04	ci right 3.550951e-04	k: 795	n:2400000
MED12   2400000 perm   2549 sec   (942 perm/sec)   p_kst 3.312500e-04   p_cons 5.927975e-01   p_joint 5.691667e-04

Joint ci ratio: 1.059158e-01	ci left: 5.379579e-04	ci right 5.985223e-04	k: 1368	n:2410000
Cons ci ratio: 2.092801e-03	ci left: 5.921786e-01	ci right 5.934196e-01	k: 1428646	n:2410000
KS ci ratio: 1.389177e-01	ci left: 3.073439e-04	ci right 3.536217e-04	k: 795	n:2410000
MED12   2410000 perm   2568 sec   (938 perm/sec)   p_kst 3.298755e-04   p_cons 5.927992e-01   p_joint 5.676349e-04

Joint ci ratio: 1.057615e-01	ci left: 5.373441e-04	ci right 5.977457e-04	k: 1372	n:2420000
Cons ci ratio: 2.088395e-03	ci left: 5.921976e-01	ci right 5.934360e-01	k: 1434617	n:2420000
KS ci ratio: 1.387436e-01	ci left: 3.068716e-04	ci right 3.530156e-04	k: 797	n:2420000
MED12   2420000 perm   2587 sec   (935 perm/sec)   p_kst 3.293388e-04   p_cons 5.928169e-01   p_joint 5.669421e-04

Joint ci ratio: 1.056462e-01	ci left: 5.363347e-04	ci right 5.965531e-04	k: 1375	n:2430000
Cons ci ratio: 2.084080e-03	ci left: 5.922021e-01	ci right 5.934380e-01	k: 1440553	n:2430000
KS ci ratio: 1.384835e-01	ci left: 3.068005e-04	ci right 3.528402e-04	k: 800	n:2430000
MED12   2430000 perm   2606 sec   (932 perm/sec)   p_kst 3.292181e-04   p_cons 5.928202e-01   p_joint 5.658436e-04

Joint ci ratio: 1.053784e-01	ci left: 5.369298e-04	ci right 5.970527e-04	k: 1382	n:2440000
Cons ci ratio: 2.079789e-03	ci left: 5.922070e-01	ci right 5.934403e-01	k: 1446490	n:2440000
KS ci ratio: 1.380533e-01	ci left: 3.075214e-04	ci right 3.535141e-04	k: 805	n:2440000
MED12   2440000 perm   2626 sec   (929 perm/sec)   p_kst 3.299180e-04   p_cons 5.928238e-01   p_joint 5.663934e-04

Joint ci ratio: 1.051885e-01	ci left: 5.367253e-04	ci right 5.967103e-04	k: 1387	n:2450000
Cons ci ratio: 2.075522e-03	ci left: 5.922126e-01	ci right 5.934435e-01	k: 1452429	n:2450000
KS ci ratio: 1.377971e-01	ci left: 3.074485e-04	ci right 3.533379e-04	k: 808	n:2450000
MED12   2450000 perm   2645 sec   (926 perm/sec)   p_kst 3.297959e-04   p_cons 5.928282e-01   p_joint 5.661224e-04

Joint ci ratio: 1.224147e-01	ci left: 3.911567e-04	ci right 4.425516e-04	k: 1024	n:2460000
Cons ci ratio: 2.071350e-03	ci left: 5.922020e-01	ci right 5.934303e-01	k: 1458328	n:2460000
KS ci ratio: 1.376271e-01	ci left: 3.069837e-04	ci right 3.527426e-04	k: 810	n:2460000
MED12   2460000 perm   2665 sec   (923 perm/sec)   p_kst 3.292683e-04   p_cons 5.928163e-01   p_joint 4.162602e-04

Joint ci ratio: 1.047367e-01	ci left: 5.371101e-04	ci right 5.968644e-04	k: 1399	n:2470000
Cons ci ratio: 2.066997e-03	ci left: 5.922396e-01	ci right 5.934654e-01	k: 1464346	n:2470000
KS ci ratio: 1.372889e-01	ci left: 3.073046e-04	ci right 3.529896e-04	k: 814	n:2470000
MED12   2470000 perm   2685 sec   (920 perm/sec)   p_kst 3.295547e-04   p_cons 5.928526e-01   p_joint 5.663968e-04

Joint ci ratio: 1.045130e-01	ci left: 5.373004e-04	ci right 5.969404e-04	k: 1405	n:2480000
Cons ci ratio: 2.062840e-03	ci left: 5.922374e-01	ci right 5.934608e-01	k: 1470266	n:2480000
KS ci ratio: 1.371208e-01	ci left: 3.068442e-04	ci right 3.524004e-04	k: 816	n:2480000
MED12   2480000 perm   2705 sec   (917 perm/sec)   p_kst 3.290323e-04   p_cons 5.928492e-01   p_joint 5.665323e-04

Joint ci ratio: 1.042168e-01	ci left: 5.382715e-04	ci right 5.978397e-04	k: 1413	n:2490000
Cons ci ratio: 2.058760e-03	ci left: 5.922232e-01	ci right 5.934441e-01	k: 1476156	n:2490000
KS ci ratio: 1.367864e-01	ci left: 3.071633e-04	ci right 3.526465e-04	k: 820	n:2490000
MED12   2490000 perm   2724 sec   (914 perm/sec)   p_kst 3.293173e-04   p_cons 5.928337e-01   p_joint 5.674699e-04

Joint ci ratio: 1.041065e-01	ci left: 5.372872e-04	ci right 5.966796e-04	k: 1416	n:2500000
Cons ci ratio: 2.054538e-03	ci left: 5.922479e-01	ci right 5.934663e-01	k: 1482143	n:2500000
KS ci ratio: 1.367032e-01	ci left: 3.063209e-04	ci right 3.516496e-04	k: 821	n:2500000
MED12   2500000 perm   2744 sec   (911 perm/sec)   p_kst 3.284000e-04   p_cons 5.928572e-01   p_joint 5.664000e-04

Joint ci ratio: 1.039599e-01	ci left: 5.366988e-04	ci right 5.959375e-04	k: 1420	n:2510000
Cons ci ratio: 2.050309e-03	ci left: 5.922803e-01	ci right 5.934963e-01	k: 1488150	n:2510000
KS ci ratio: 1.365372e-01	ci left: 3.058701e-04	ci right 3.510727e-04	k: 823	n:2510000
MED12   2510000 perm   2764 sec   (908 perm/sec)   p_kst 3.278884e-04   p_cons 5.928884e-01   p_joint 5.657371e-04

Joint ci ratio: 1.038140e-01	ci left: 5.361150e-04	ci right 5.952012e-04	k: 1424	n:2520000
Cons ci ratio: 2.046188e-03	ci left: 5.922931e-01	ci right 5.935067e-01	k: 1494108	n:2520000
KS ci ratio: 1.363719e-01	ci left: 3.054229e-04	ci right 3.505003e-04	k: 825	n:2520000
MED12   2520000 perm   2784 sec   (905 perm/sec)   p_kst 3.273810e-04   p_cons 5.929000e-01   p_joint 5.650794e-04

Joint ci ratio: 1.035961e-01	ci left: 5.363060e-04	ci right 5.952816e-04	k: 1430	n:2530000
Cons ci ratio: 2.042153e-03	ci left: 5.922912e-01	ci right 5.935023e-01	k: 1500029	n:2530000
KS ci ratio: 1.362071e-01	ci left: 3.049792e-04	ci right 3.499323e-04	k: 827	n:2530000
MED12   2530000 perm   2804 sec   (902 perm/sec)   p_kst 3.268775e-04   p_cons 5.928968e-01   p_joint 5.652174e-04

Joint ci ratio: 1.034156e-01	ci left: 5.361121e-04	ci right 5.949575e-04	k: 1435	n:2540000
Cons ci ratio: 2.038127e-03	ci left: 5.922928e-01	ci right 5.935015e-01	k: 1505959	n:2540000
KS ci ratio: 1.359610e-01	ci left: 3.049194e-04	ci right 3.497759e-04	k: 830	n:2540000
MED12   2540000 perm   2824 sec   (899 perm/sec)   p_kst 3.267717e-04   p_cons 5.928972e-01   p_joint 5.649606e-04

Joint ci ratio: 1.029860e-01	ci left: 5.385942e-04	ci right 5.974515e-04	k: 1447	n:2550000
Cons ci ratio: 2.034216e-03	ci left: 5.922728e-01	ci right 5.934792e-01	k: 1511834	n:2550000
KS ci ratio: 1.353111e-01	ci left: 3.067545e-04	ci right 3.516479e-04	k: 838	n:2550000
MED12   2550000 perm   2844 sec   (897 perm/sec)   p_kst 3.286275e-04   p_cons 5.928761e-01   p_joint 5.674510e-04

Joint ci ratio: 1.028087e-01	ci left: 5.383932e-04	ci right 5.971211e-04	k: 1452	n:2560000
Cons ci ratio: 2.030310e-03	ci left: 5.922572e-01	ci right 5.934613e-01	k: 1517720	n:2560000
KS ci ratio: 1.349097e-01	ci left: 3.074433e-04	ci right 3.522934e-04	k: 843	n:2560000
MED12   2560000 perm   2864 sec   (894 perm/sec)   p_kst 3.292969e-04   p_cons 5.928594e-01   p_joint 5.671875e-04

Joint ci ratio: 1.027028e-01	ci left: 5.374356e-04	ci right 5.959950e-04	k: 1455	n:2570000
Cons ci ratio: 2.026273e-03	ci left: 5.922780e-01	ci right 5.934797e-01	k: 1523699	n:2570000
KS ci ratio: 1.347502e-01	ci left: 3.069990e-04	ci right 3.517270e-04	k: 845	n:2570000
MED12   2570000 perm   2884 sec   (891 perm/sec)   p_kst 3.287938e-04   p_cons 5.928790e-01   p_joint 5.661479e-04

Joint ci ratio: 1.025269e-01	ci left: 5.372407e-04	ci right 5.956727e-04	k: 1460	n:2580000
Cons ci ratio: 2.022380e-03	ci left: 5.922704e-01	ci right 5.934697e-01	k: 1529605	n:2580000
KS ci ratio: 1.343537e-01	ci left: 3.076819e-04	ci right 3.523669e-04	k: 850	n:2580000
MED12   2580000 perm   2905 sec   (888 perm/sec)   p_kst 3.294574e-04   p_cons 5.928702e-01   p_joint 5.658915e-04

Joint ci ratio: 1.023519e-01	ci left: 5.370475e-04	ci right 5.953527e-04	k: 1465	n:2590000
Cons ci ratio: 2.018384e-03	ci left: 5.922925e-01	ci right 5.934895e-01	k: 1535588	n:2590000
KS ci ratio: 1.341175e-01	ci left: 3.076133e-04	ci right 3.522036e-04	k: 853	n:2590000
MED12   2590000 perm   2925 sec   (885 perm/sec)   p_kst 3.293436e-04   p_cons 5.928911e-01   p_joint 5.656371e-04

Joint ci ratio: 1.021778e-01	ci left: 5.368558e-04	ci right 5.950351e-04	k: 1470	n:2600000
Cons ci ratio: 2.014646e-03	ci left: 5.922583e-01	ci right 5.934530e-01	k: 1541425	n:2600000
KS ci ratio: 1.338826e-01	ci left: 3.075453e-04	ci right 3.520415e-04	k: 856	n:2600000
MED12   2600000 perm   2945 sec   (883 perm/sec)   p_kst 3.292308e-04   p_cons 5.928558e-01   p_joint 5.653846e-04

Joint ci ratio: 1.019356e-01	ci left: 5.374124e-04	ci right 5.955057e-04	k: 1477	n:2610000
Cons ci ratio: 2.010854e-03	ci left: 5.922424e-01	ci right 5.934348e-01	k: 1547309	n:2610000
KS ci ratio: 1.335712e-01	ci left: 3.078483e-04	ci right 3.522765e-04	k: 860	n:2610000
MED12   2610000 perm   2966 sec   (880 perm/sec)   p_kst 3.295019e-04   p_cons 5.928387e-01   p_joint 5.659004e-04

Joint ci ratio: 1.015582e-01	ci left: 5.394529e-04	ci right 5.975381e-04	k: 1488	n:2620000
Cons ci ratio: 2.007087e-03	ci left: 5.922258e-01	ci right 5.934160e-01	k: 1553191	n:2620000
KS ci ratio: 1.333391e-01	ci left: 3.077801e-04	ci right 3.521151e-04	k: 863	n:2620000
MED12   2620000 perm   2986 sec   (877 perm/sec)   p_kst 3.293893e-04   p_cons 5.928210e-01   p_joint 5.679389e-04

Joint ci ratio: 1.013882e-01	ci left: 5.392546e-04	ci right 5.972154e-04	k: 1493	n:2630000
Cons ci ratio: 2.003340e-03	ci left: 5.922093e-01	ci right 5.933973e-01	k: 1559073	n:2630000
KS ci ratio: 1.331082e-01	ci left: 3.077125e-04	ci right 3.519550e-04	k: 866	n:2630000
MED12   2630000 perm   3007 sec   (875 perm/sec)   p_kst 3.292776e-04   p_cons 5.928034e-01   p_joint 5.676806e-04

Joint ci ratio: 1.012190e-01	ci left: 5.390580e-04	ci right 5.968952e-04	k: 1498	n:2640000
Cons ci ratio: 1.999470e-03	ci left: 5.922279e-01	ci right 5.934136e-01	k: 1565047	n:2640000
KS ci ratio: 1.328785e-01	ci left: 3.076455e-04	ci right 3.517960e-04	k: 869	n:2640000
MED12   2640000 perm   3028 sec   (872 perm/sec)   p_kst 3.291667e-04   p_cons 5.928208e-01   p_joint 5.674242e-04

Joint ci ratio: 1.011179e-01	ci left: 5.381272e-04	ci right 5.958034e-04	k: 1501	n:2650000
Cons ci ratio: 1.995560e-03	ci left: 5.922614e-01	ci right 5.934448e-01	k: 1571061	n:2650000
KS ci ratio: 1.328023e-01	ci left: 3.068494e-04	ci right 3.508583e-04	k: 870	n:2650000
MED12   2650000 perm   3049 sec   (869 perm/sec)   p_kst 3.283019e-04   p_cons 5.928532e-01   p_joint 5.664151e-04

Joint ci ratio: 1.008496e-01	ci left: 5.390357e-04	ci right 5.966470e-04	k: 1509	n:2660000
Cons ci ratio: 1.991847e-03	ci left: 5.922525e-01	ci right 5.934337e-01	k: 1576963	n:2660000
KS ci ratio: 1.324984e-01	ci left: 3.071497e-04	ci right 3.510930e-04	k: 874	n:2660000
MED12   2660000 perm   3070 sec   (866 perm/sec)   p_kst 3.285714e-04   p_cons 5.928432e-01   p_joint 5.672932e-04

Joint ci ratio: 1.008163e-01	ci left: 5.373819e-04	ci right 5.947964e-04	k: 1510	n:2670000
Cons ci ratio: 1.988153e-03	ci left: 5.922441e-01	ci right 5.934231e-01	k: 1582866	n:2670000
KS ci ratio: 1.324228e-01	ci left: 3.063614e-04	ci right 3.501649e-04	k: 875	n:2670000
MED12   2670000 perm   3091 sec   (864 perm/sec)   p_kst 3.277154e-04   p_cons 5.928337e-01   p_joint 5.655431e-04

Joint ci ratio: 1.007164e-01	ci left: 5.364680e-04	ci right 5.937246e-04	k: 1513	n:2680000
Cons ci ratio: 1.984477e-03	ci left: 5.922361e-01	ci right 5.934129e-01	k: 1588770	n:2680000
KS ci ratio: 1.323473e-01	ci left: 3.055790e-04	ci right 3.492439e-04	k: 876	n:2680000
MED12   2680000 perm   3112 sec   (861 perm/sec)   p_kst 3.268657e-04   p_cons 5.928246e-01   p_joint 5.645522e-04

Joint ci ratio: 1.004183e-01	ci left: 5.377353e-04	ci right 5.949473e-04	k: 1522	n:2690000
Cons ci ratio: 1.980805e-03	ci left: 5.922323e-01	ci right 5.934069e-01	k: 1594685	n:2690000
KS ci ratio: 1.320465e-01	ci left: 3.058809e-04	ci right 3.494817e-04	k: 880	n:2690000
MED12   2690000 perm   3133 sec   (859 perm/sec)   p_kst 3.271375e-04   p_cons 5.928197e-01   p_joint 5.657993e-04

Joint ci ratio: 1.002211e-01	ci left: 5.379101e-04	ci right 5.950217e-04	k: 1528	n:2700000
Cons ci ratio: 1.977051e-03	ci left: 5.922537e-01	ci right 5.934261e-01	k: 1600668	n:2700000
KS ci ratio: 1.318223e-01	ci left: 3.058224e-04	ci right 3.493351e-04	k: 883	n:2700000
MED12   2700000 perm   3155 sec   (856 perm/sec)   p_kst 3.270370e-04   p_cons 5.928400e-01   p_joint 5.659259e-04

Joint ci ratio: 1.000250e-01	ci left: 5.380838e-04	ci right 5.950955e-04	k: 1534	n:2710000
Cons ci ratio: 1.973458e-03	ci left: 5.922406e-01	ci right 5.934109e-01	k: 1606558	n:2710000
KS ci ratio: 1.314510e-01	ci left: 3.064782e-04	ci right 3.499517e-04	k: 888	n:2710000
MED12   2710000 perm   3176 sec   (853 perm/sec)   p_kst 3.276753e-04   p_cons 5.928258e-01   p_joint 5.660517e-04

Joint ci ratio: 9.986255e-02	ci left: 5.378978e-04	ci right 5.947918e-04	k: 1539	n:2720000
Cons ci ratio: 1.969758e-03	ci left: 5.922585e-01	ci right 5.934266e-01	k: 1612532	n:2720000
KS ci ratio: 1.313034e-01	ci left: 3.060626e-04	ci right 3.494246e-04	k: 890	n:2720000
MED12   2720000 perm   3197 sec   (851 perm/sec)   p_kst 3.272059e-04   p_cons 5.928426e-01   p_joint 5.658088e-04

Joint ci ratio: 9.970084e-02	ci left: 5.377133e-04	ci right 5.944903e-04	k: 1544	n:2730000
Cons ci ratio: 1.966179e-03	ci left: 5.922517e-01	ci right 5.934177e-01	k: 1618439	n:2730000
KS ci ratio: 1.311563e-01	ci left: 3.056500e-04	ci right 3.489013e-04	k: 892	n:2730000
MED12   2730000 perm   3218 sec   (848 perm/sec)   p_kst 3.267399e-04   p_cons 5.928348e-01   p_joint 5.655678e-04

Joint ci ratio: 9.953991e-02	ci left: 5.375302e-04	ci right 5.941909e-04	k: 1549	n:2740000
Cons ci ratio: 1.962433e-03	ci left: 5.922910e-01	ci right 5.934548e-01	k: 1624472	n:2740000
KS ci ratio: 1.308635e-01	ci left: 3.059465e-04	ci right 3.491356e-04	k: 896	n:2740000
MED12   2740000 perm   3240 sec   (846 perm/sec)   p_kst 3.270073e-04   p_cons 5.928730e-01   p_joint 5.653285e-04

Joint ci ratio: 9.937977e-02	ci left: 5.373485e-04	ci right 5.938936e-04	k: 1554	n:2750000
Cons ci ratio: 1.958750e-03	ci left: 5.923194e-01	ci right 5.934811e-01	k: 1630476	n:2750000
KS ci ratio: 1.307179e-01	ci left: 3.055374e-04	ci right 3.486171e-04	k: 898	n:2750000
MED12   2750000 perm   3261 sec   (843 perm/sec)   p_kst 3.265455e-04   p_cons 5.929004e-01   p_joint 5.650909e-04

Joint ci ratio: 9.928409e-02	ci left: 5.364615e-04	ci right 5.928558e-04	k: 1557	n:2760000
Cons ci ratio: 1.955260e-03	ci left: 5.923053e-01	ci right 5.934648e-01	k: 1636363	n:2760000
KS ci ratio: 1.306453e-01	ci left: 3.047809e-04	ci right 3.477282e-04	k: 899	n:2760000
MED12   2760000 perm   3283 sec   (841 perm/sec)   p_kst 3.257246e-04   p_cons 5.928851e-01   p_joint 5.641304e-04

Joint ci ratio: 9.915691e-02	ci left: 5.359330e-04	ci right 5.921954e-04	k: 1561	n:2770000
Cons ci ratio: 1.951844e-03	ci left: 5.922775e-01	ci right 5.934350e-01	k: 1642212	n:2770000
KS ci ratio: 1.305004e-01	ci left: 3.043790e-04	ci right 3.472184e-04	k: 901	n:2770000
MED12   2770000 perm   3304 sec   (838 perm/sec)   p_kst 3.252708e-04   p_cons 5.928563e-01   p_joint 5.635379e-04

Joint ci ratio: 9.899860e-02	ci left: 5.357592e-04	ci right 5.919083e-04	k: 1566	n:2780000
Cons ci ratio: 1.948243e-03	ci left: 5.923003e-01	ci right 5.934557e-01	k: 1648201	n:2780000
KS ci ratio: 1.302840e-01	ci left: 3.043281e-04	ci right 3.470837e-04	k: 904	n:2780000
MED12   2780000 perm   3326 sec   (836 perm/sec)   p_kst 3.251799e-04   p_cons 5.928781e-01   p_joint 5.633094e-04

Joint ci ratio: 9.874681e-02	ci left: 5.366354e-04	ci right 5.927250e-04	k: 1574	n:2790000
Cons ci ratio: 1.944739e-03	ci left: 5.923035e-01	ci right 5.934569e-01	k: 1654136	n:2790000
KS ci ratio: 1.298542e-01	ci left: 3.053179e-04	ci right 3.480602e-04	k: 910	n:2790000
MED12   2790000 perm   3348 sec   (833 perm/sec)   p_kst 3.261649e-04   p_cons 5.928803e-01   p_joint 5.641577e-04

Joint ci ratio: 9.840369e-02	ci left: 5.385506e-04	ci right 5.946335e-04	k: 1585	n:2800000
Cons ci ratio: 1.941135e-03	ci left: 5.923364e-01	ci right 5.934877e-01	k: 1660154	n:2800000
KS ci ratio: 1.295700e-01	ci left: 3.056097e-04	ci right 3.482920e-04	k: 914	n:2800000
MED12   2800000 perm   3370 sec   (831 perm/sec)   p_kst 3.264286e-04   p_cons 5.929121e-01   p_joint 5.660714e-04

Joint ci ratio: 9.827986e-02	ci left: 5.380225e-04	ci right 5.939759e-04	k: 1589	n:2810000
Cons ci ratio: 1.937695e-03	ci left: 5.923331e-01	ci right 5.934823e-01	k: 1666071	n:2810000
KS ci ratio: 1.292877e-01	ci left: 3.058995e-04	ci right 3.485221e-04	k: 918	n:2810000
MED12   2810000 perm   3392 sec   (828 perm/sec)   p_kst 3.266904e-04   p_cons 5.929078e-01   p_joint 5.654804e-04

Joint ci ratio: 9.809494e-02	ci left: 5.381901e-04	ci right 5.940495e-04	k: 1595	n:2820000
Cons ci ratio: 1.934224e-03	ci left: 5.923423e-01	ci right 5.934894e-01	k: 1672023	n:2820000
KS ci ratio: 1.291473e-01	ci left: 3.055010e-04	ci right 3.480183e-04	k: 920	n:2820000
MED12   2820000 perm   3414 sec   (826 perm/sec)   p_kst 3.262411e-04   p_cons 5.929160e-01   p_joint 5.656028e-04

Joint ci ratio: 9.803360e-02	ci left: 5.369777e-04	ci right 5.926744e-04	k: 1597	n:2830000
Cons ci ratio: 1.930661e-03	ci left: 5.923789e-01	ci right 5.935241e-01	k: 1678053	n:2830000
KS ci ratio: 1.290073e-01	ci left: 3.051054e-04	ci right 3.475181e-04	k: 922	n:2830000
MED12   2830000 perm   3436 sec   (824 perm/sec)   p_kst 3.257951e-04   p_cons 5.929516e-01   p_joint 5.643110e-04

Joint ci ratio: 9.797237e-02	ci left: 5.357739e-04	ci right 5.913090e-04	k: 1599	n:2840000
Cons ci ratio: 1.927318e-03	ci left: 5.923653e-01	ci right 5.935084e-01	k: 1683941	n:2840000
KS ci ratio: 1.289375e-01	ci left: 3.043718e-04	ci right 3.466579e-04	k: 923	n:2840000
MED12   2840000 perm   3458 sec   (821 perm/sec)   p_kst 3.250000e-04   p_cons 5.929370e-01   p_joint 5.630282e-04

Joint ci ratio: 9.775874e-02	ci left: 5.362900e-04	ci right 5.917505e-04	k: 1606	n:2850000
Cons ci ratio: 1.924001e-03	ci left: 5.923494e-01	ci right 5.934905e-01	k: 1689822	n:2850000
KS ci ratio: 1.285900e-01	ci left: 3.050017e-04	ci right 3.472524e-04	k: 928	n:2850000
MED12   2850000 perm   3481 sec   (819 perm/sec)   p_kst 3.256140e-04   p_cons 5.929200e-01   p_joint 5.635088e-04

Joint ci ratio: 9.763732e-02	ci left: 5.357793e-04	ci right 5.911142e-04	k: 1610	n:2860000
Cons ci ratio: 1.920711e-03	ci left: 5.923310e-01	ci right 5.934702e-01	k: 1695696	n:2860000
KS ci ratio: 1.283829e-01	ci left: 3.049505e-04	ci right 3.471209e-04	k: 931	n:2860000
MED12   2860000 perm   3503 sec   (816 perm/sec)   p_kst 3.255245e-04   p_cons 5.929007e-01   p_joint 5.629371e-04

Joint ci ratio: 9.751636e-02	ci left: 5.352722e-04	ci right 5.904823e-04	k: 1614	n:2870000
Cons ci ratio: 1.917370e-03	ci left: 5.923299e-01	ci right 5.934671e-01	k: 1701619	n:2870000
KS ci ratio: 1.281768e-01	ci left: 3.048997e-04	ci right 3.469903e-04	k: 934	n:2870000
MED12   2870000 perm   3525 sec   (814 perm/sec)   p_kst 3.254355e-04   p_cons 5.928986e-01   p_joint 5.623693e-04

Joint ci ratio: 1.131371e-01	ci left: 3.930896e-04	ci right 4.405632e-04	k: 1199	n:2880000
Cons ci ratio: 1.914053e-03	ci left: 5.923275e-01	ci right 5.934626e-01	k: 1707538	n:2880000
KS ci ratio: 1.277674e-01	ci left: 3.058577e-04	ci right 3.479354e-04	k: 940	n:2880000
MED12   2880000 perm   3547 sec   (812 perm/sec)   p_kst 3.263889e-04   p_cons 5.928951e-01   p_joint 4.163194e-04

Joint ci ratio: 1.129959e-01	ci left: 3.927382e-04	ci right 4.401061e-04	k: 1202	n:2890000
Cons ci ratio: 1.910812e-03	ci left: 5.923098e-01	ci right 5.934430e-01	k: 1713413	n:2890000
KS ci ratio: 1.275643e-01	ci left: 3.058043e-04	ci right 3.478027e-04	k: 943	n:2890000
MED12   2890000 perm   3570 sec   (810 perm/sec)   p_kst 3.262976e-04   p_cons 5.928765e-01   p_joint 4.159170e-04

Joint ci ratio: 9.694772e-02	ci left: 5.361273e-04	ci right 5.910848e-04	k: 1633	n:2900000
Cons ci ratio: 1.907581e-03	ci left: 5.922939e-01	ci right 5.934252e-01	k: 1719293	n:2900000
KS ci ratio: 1.272277e-01	ci left: 3.064190e-04	ci right 3.483824e-04	k: 948	n:2900000
MED12   2900000 perm   3593 sec   (807 perm/sec)   p_kst 3.268966e-04   p_cons 5.928597e-01   p_joint 5.631034e-04

Joint ci ratio: 9.671122e-02	ci left: 5.369675e-04	ci right 5.918693e-04	k: 1641	n:2910000
Cons ci ratio: 1.904281e-03	ci left: 5.922999e-01	ci right 5.934292e-01	k: 1725236	n:2910000
KS ci ratio: 1.268274e-01	ci left: 3.073624e-04	ci right 3.493125e-04	k: 954	n:2910000
MED12   2910000 perm   3615 sec   (805 perm/sec)   p_kst 3.278351e-04   p_cons 5.928646e-01   p_joint 5.639175e-04

Joint ci ratio: 9.659366e-02	ci left: 5.364653e-04	ci right 5.912453e-04	k: 1645	n:2920000
Cons ci ratio: 1.901035e-03	ci left: 5.922965e-01	ci right 5.934239e-01	k: 1731152	n:2920000
KS ci ratio: 1.266287e-01	ci left: 3.073046e-04	ci right 3.491762e-04	k: 957	n:2920000
MED12   2920000 perm   3638 sec   (803 perm/sec)   p_kst 3.277397e-04   p_cons 5.928603e-01   p_joint 5.633562e-04

Joint ci ratio: 9.638890e-02	ci left: 5.369658e-04	ci right 5.916741e-04	k: 1652	n:2930000
Cons ci ratio: 1.897707e-03	ci left: 5.923181e-01	ci right 5.934435e-01	k: 1737141	n:2930000
KS ci ratio: 1.264309e-01	ci left: 3.072472e-04	ci right 3.490408e-04	k: 960	n:2930000
MED12   2930000 perm   3661 sec   (800 perm/sec)   p_kst 3.276451e-04   p_cons 5.928809e-01   p_joint 5.638225e-04

Joint ci ratio: 9.627252e-02	ci left: 5.364672e-04	ci right 5.910549e-04	k: 1656	n:2940000
Cons ci ratio: 1.894343e-03	ci left: 5.923531e-01	ci right 5.934766e-01	k: 1743170	n:2940000
KS ci ratio: 1.262340e-01	ci left: 3.071903e-04	ci right 3.489062e-04	k: 963	n:2940000
MED12   2940000 perm   3684 sec   (798 perm/sec)   p_kst 3.275510e-04   p_cons 5.929150e-01   p_joint 5.632653e-04

Joint ci ratio: 9.612760e-02	ci left: 5.363028e-04	ci right 5.907871e-04	k: 1661	n:2950000
Cons ci ratio: 1.891131e-03	ci left: 5.923537e-01	ci right 5.934753e-01	k: 1749098	n:2950000
KS ci ratio: 1.259729e-01	ci left: 3.074622e-04	ci right 3.491221e-04	k: 967	n:2950000
MED12   2950000 perm   3707 sec   (796 perm/sec)   p_kst 3.277966e-04   p_cons 5.929146e-01   p_joint 5.630508e-04

Joint ci ratio: 9.604100e-02	ci left: 5.354801e-04	ci right 5.898290e-04	k: 1664	n:2960000
Cons ci ratio: 1.887886e-03	ci left: 5.923668e-01	ci right 5.934864e-01	k: 1755063	n:2960000
KS ci ratio: 1.258430e-01	ci left: 3.070778e-04	ci right 3.486396e-04	k: 969	n:2960000
MED12   2960000 perm   3730 sec   (794 perm/sec)   p_kst 3.273649e-04   p_cons 5.929267e-01   p_joint 5.621622e-04

Joint ci ratio: 1.112973e-01	ci left: 3.942679e-04	ci right 4.410586e-04	k: 1239	n:2970000
Cons ci ratio: 1.884657e-03	ci left: 5.923801e-01	ci right 5.934979e-01	k: 1761029	n:2970000
KS ci ratio: 1.255198e-01	ci left: 3.076745e-04	ci right 3.492022e-04	k: 974	n:2970000
MED12   2970000 perm   3753 sec   (791 perm/sec)   p_kst 3.279461e-04   p_cons 5.929391e-01   p_joint 4.171717e-04

Joint ci ratio: 1.111182e-01	ci left: 3.942498e-04	ci right 4.409581e-04	k: 1243	n:2980000
Cons ci ratio: 1.881624e-03	ci left: 5.923473e-01	ci right 5.934632e-01	k: 1766858	n:2980000
KS ci ratio: 1.253272e-01	ci left: 3.076172e-04	ci right 3.490686e-04	k: 977	n:2980000
MED12   2980000 perm   3775 sec   (789 perm/sec)   p_kst 3.278523e-04   p_cons 5.929054e-01   p_joint 4.171141e-04

Joint ci ratio: 1.109400e-01	ci left: 3.942319e-04	ci right 4.408583e-04	k: 1247	n:2990000
Cons ci ratio: 1.878410e-03	ci left: 5.923650e-01	ci right 5.934790e-01	k: 1772837	n:2990000
KS ci ratio: 1.250717e-01	ci left: 3.078842e-04	ci right 3.492808e-04	k: 981	n:2990000
MED12   2990000 perm   3798 sec   (787 perm/sec)   p_kst 3.280936e-04   p_cons 5.929221e-01   p_joint 4.170569e-04

Joint ci ratio: 1.106301e-01	ci left: 3.951864e-04	ci right 4.417867e-04	k: 1254	n:3000000
Cons ci ratio: 1.875144e-03	ci left: 5.923998e-01	ci right 5.935120e-01	k: 1778868	n:3000000
KS ci ratio: 1.246913e-01	ci left: 3.087955e-04	ci right 3.501790e-04	k: 987	n:3000000
MED12   3000000 perm   3821 sec   (785 perm/sec)   p_kst 3.290000e-04   p_cons 5.929560e-01   p_joint 4.180000e-04

Joint ci ratio: 1.103665e-01	ci left: 3.958118e-04	ci right 4.423674e-04	k: 1260	n:3010000
Cons ci ratio: 1.872055e-03	ci left: 5.923936e-01	ci right 5.935039e-01	k: 1784776	n:3010000
KS ci ratio: 1.244396e-01	ci left: 3.090571e-04	ci right 3.503859e-04	k: 991	n:3010000
MED12   3010000 perm   3844 sec   (783 perm/sec)   p_kst 3.292359e-04   p_cons 5.929488e-01   p_joint 4.186047e-04

Joint ci ratio: 1.101919e-01	ci left: 3.957891e-04	ci right 4.422636e-04	k: 1264	n:3020000
Cons ci ratio: 1.868883e-03	ci left: 5.924126e-01	ci right 5.935210e-01	k: 1790760	n:3020000
KS ci ratio: 1.241894e-01	ci left: 3.093170e-04	ci right 3.505913e-04	k: 995	n:3020000
MED12   3020000 perm   3866 sec   (781 perm/sec)   p_kst 3.294702e-04   p_cons 5.929669e-01   p_joint 4.185430e-04

Joint ci ratio: 1.100615e-01	ci left: 3.954457e-04	ci right 4.418214e-04	k: 1267	n:3030000
Cons ci ratio: 1.865818e-03	ci left: 5.924080e-01	ci right 5.935146e-01	k: 1796673	n:3030000
KS ci ratio: 1.240650e-01	ci left: 3.089358e-04	ci right 3.501148e-04	k: 997	n:3030000
MED12   3030000 perm   3890 sec   (779 perm/sec)   p_kst 3.290429e-04   p_cons 5.929614e-01   p_joint 4.181518e-04

Joint ci ratio: 1.097589e-01	ci left: 3.963843e-04	ci right 4.427339e-04	k: 1274	n:3040000
Cons ci ratio: 1.862746e-03	ci left: 5.924090e-01	ci right 5.935138e-01	k: 1802603	n:3040000
KS ci ratio: 1.236321e-01	ci left: 3.101508e-04	ci right 3.513371e-04	k: 1004	n:3040000
MED12   3040000 perm   3914 sec   (777 perm/sec)   p_kst 3.302632e-04   p_cons 5.929615e-01   p_joint 4.190789e-04

Joint ci ratio: 1.096300e-01	ci left: 3.960413e-04	ci right 4.422929e-04	k: 1277	n:3050000
Cons ci ratio: 1.859730e-03	ci left: 5.923995e-01	ci right 5.935026e-01	k: 1808501	n:3050000
KS ci ratio: 1.235093e-01	ci left: 3.097694e-04	ci right 3.508611e-04	k: 1006	n:3050000
MED12   3050000 perm   3938 sec   (775 perm/sec)   p_kst 3.298361e-04   p_cons 5.929511e-01   p_joint 4.186885e-04

Joint ci ratio: 1.093736e-01	ci left: 3.966541e-04	ci right 4.428620e-04	k: 1283	n:3060000
Cons ci ratio: 1.856649e-03	ci left: 5.924107e-01	ci right 5.935120e-01	k: 1814462	n:3060000
KS ci ratio: 1.232037e-01	ci left: 3.103407e-04	ci right 3.513989e-04	k: 1011	n:3060000
MED12   3060000 perm   3962 sec   (772 perm/sec)   p_kst 3.303922e-04   p_cons 5.929614e-01   p_joint 4.192810e-04

Joint ci ratio: 1.093311e-01	ci left: 3.956789e-04	ci right 4.417541e-04	k: 1284	n:3070000
Cons ci ratio: 1.853586e-03	ci left: 5.924212e-01	ci right 5.935206e-01	k: 1820421	n:3070000
KS ci ratio: 1.231430e-01	ci left: 3.096455e-04	ci right 3.505901e-04	k: 1012	n:3070000
MED12   3070000 perm   3986 sec   (770 perm/sec)   p_kst 3.296417e-04   p_cons 5.929710e-01   p_joint 4.182410e-04

Joint ci ratio: 1.092886e-01	ci left: 3.947100e-04	ci right 4.406534e-04	k: 1285	n:3080000
Cons ci ratio: 1.850726e-03	ci left: 5.923826e-01	ci right 5.934802e-01	k: 1826229	n:3080000
KS ci ratio: 1.230823e-01	ci left: 3.089548e-04	ci right 3.497865e-04	k: 1013	n:3080000
MED12   3080000 perm   4010 sec   (768 perm/sec)   p_kst 3.288961e-04   p_cons 5.929315e-01   p_joint 4.172078e-04

Joint ci ratio: 1.091614e-01	ci left: 3.943770e-04	ci right 4.402247e-04	k: 1288	n:3090000
Cons ci ratio: 1.847733e-03	ci left: 5.923824e-01	ci right 5.934783e-01	k: 1832155	n:3090000
KS ci ratio: 1.229006e-01	ci left: 3.088959e-04	ci right 3.496552e-04	k: 1016	n:3090000
MED12   3090000 perm   4034 sec   (766 perm/sec)   p_kst 3.288026e-04   p_cons 5.929304e-01   p_joint 4.168285e-04

Joint ci ratio: 1.090346e-01	ci left: 3.940461e-04	ci right 4.397988e-04	k: 1291	n:3100000
Cons ci ratio: 1.844826e-03	ci left: 5.923635e-01	ci right 5.934576e-01	k: 1838023	n:3100000
KS ci ratio: 1.227800e-01	ci left: 3.085248e-04	ci right 3.491922e-04	k: 1018	n:3100000
MED12   3100000 perm   4058 sec   (764 perm/sec)   p_kst 3.283871e-04   p_cons 5.929106e-01   p_joint 4.164516e-04

Joint ci ratio: 1.089082e-01	ci left: 3.937174e-04	ci right 4.393755e-04	k: 1294	n:3110000
Cons ci ratio: 1.841822e-03	ci left: 5.923737e-01	ci right 5.934660e-01	k: 1843981	n:3110000
KS ci ratio: 1.227198e-01	ci left: 3.078445e-04	ci right 3.484009e-04	k: 1019	n:3110000
MED12   3110000 perm   4082 sec   (762 perm/sec)   p_kst 3.276527e-04   p_cons 5.929199e-01   p_joint 4.160772e-04

Joint ci ratio: 1.087404e-01	ci left: 3.937026e-04	ci right 4.392842e-04	k: 1298	n:3120000
Cons ci ratio: 1.838816e-03	ci left: 5.923883e-01	ci right 5.934789e-01	k: 1849953	n:3120000
KS ci ratio: 1.224799e-01	ci left: 3.081005e-04	ci right 3.486055e-04	k: 1023	n:3120000
MED12   3120000 perm   4106 sec   (760 perm/sec)   p_kst 3.278846e-04   p_cons 5.929337e-01   p_joint 4.160256e-04

Joint ci ratio: 9.359947e-02	ci left: 5.338449e-04	ci right 5.865750e-04	k: 1752	n:3130000
Cons ci ratio: 1.835843e-03	ci left: 5.923977e-01	ci right 5.934865e-01	k: 1855909	n:3130000
KS ci ratio: 1.221819e-01	ci left: 3.086647e-04	ci right 3.491381e-04	k: 1028	n:3130000
MED12   3130000 perm   4131 sec   (758 perm/sec)   p_kst 3.284345e-04   p_cons 5.929422e-01   p_joint 5.597444e-04

Joint ci ratio: 9.338659e-02	ci left: 5.346330e-04	ci right 5.873143e-04	k: 1760	n:3140000
Cons ci ratio: 1.832982e-03	ci left: 5.923815e-01	ci right 5.934686e-01	k: 1861785	n:3140000
KS ci ratio: 1.218272e-01	ci left: 3.095342e-04	ci right 3.499953e-04	k: 1034	n:3140000
MED12   3140000 perm   4155 sec   (756 perm/sec)   p_kst 3.292994e-04   p_cons 5.929252e-01   p_joint 5.605096e-04

Joint ci ratio: 9.333366e-02	ci left: 5.335558e-04	ci right 5.860995e-04	k: 1762	n:3150000
Cons ci ratio: 1.830141e-03	ci left: 5.923639e-01	ci right 5.934493e-01	k: 1867656	n:3150000
KS ci ratio: 1.217097e-01	ci left: 3.091672e-04	ci right 3.495384e-04	k: 1036	n:3150000
MED12   3150000 perm   4179 sec   (754 perm/sec)   p_kst 3.288889e-04   p_cons 5.929067e-01   p_joint 5.593651e-04

Joint ci ratio: 9.320159e-02	ci left: 5.334127e-04	ci right 5.858639e-04	k: 1767	n:3160000
Cons ci ratio: 1.827178e-03	ci left: 5.923818e-01	ci right 5.934655e-01	k: 1873639	n:3160000
KS ci ratio: 1.215340e-01	ci left: 3.091093e-04	ci right 3.494105e-04	k: 1039	n:3160000
MED12   3160000 perm   4203 sec   (752 perm/sec)   p_kst 3.287975e-04   p_cons 5.929237e-01   p_joint 5.591772e-04

Joint ci ratio: 9.304384e-02	ci left: 5.335787e-04	ci right 5.859526e-04	k: 1773	n:3170000
Cons ci ratio: 1.824209e-03	ci left: 5.924050e-01	ci right 5.934869e-01	k: 1879639	n:3170000
KS ci ratio: 1.213591e-01	ci left: 3.090518e-04	ci right 3.492834e-04	k: 1042	n:3170000
MED12   3170000 perm   4227 sec   (750 perm/sec)   p_kst 3.287066e-04   p_cons 5.929461e-01   p_joint 5.593060e-04

Joint ci ratio: 9.278264e-02	ci left: 5.349724e-04	ci right 5.873277e-04	k: 1783	n:3180000
Cons ci ratio: 1.821434e-03	ci left: 5.923805e-01	ci right 5.934608e-01	k: 1885488	n:3180000
KS ci ratio: 1.210115e-01	ci left: 3.099095e-04	ci right 3.501290e-04	k: 1048	n:3180000
MED12   3180000 perm   4253 sec   (748 perm/sec)   p_kst 3.295597e-04   p_cons 5.929208e-01   p_joint 5.606918e-04

Joint ci ratio: 9.257527e-02	ci left: 5.357451e-04	ci right 5.880525e-04	k: 1791	n:3190000
Cons ci ratio: 1.818631e-03	ci left: 5.923672e-01	ci right 5.934458e-01	k: 1891372	n:3190000
KS ci ratio: 1.206097e-01	ci left: 3.110661e-04	ci right 3.512920e-04	k: 1055	n:3190000
MED12   3190000 perm   4277 sec   (746 perm/sec)   p_kst 3.307210e-04   p_cons 5.929066e-01   p_joint 5.614420e-04

Joint ci ratio: 9.242067e-02	ci left: 5.359025e-04	ci right 5.881331e-04	k: 1797	n:3200000
Cons ci ratio: 1.815896e-03	ci left: 5.923390e-01	ci right 5.934159e-01	k: 1897208	n:3200000
KS ci ratio: 1.203251e-01	ci left: 3.116094e-04	ci right 3.518038e-04	k: 1060	n:3200000
MED12   3200000 perm   4302 sec   (744 perm/sec)   p_kst 3.312500e-04   p_cons 5.928775e-01   p_joint 5.615625e-04

Joint ci ratio: 9.226684e-02	ci left: 5.360590e-04	ci right 5.882133e-04	k: 1803	n:3210000
Cons ci ratio: 1.813105e-03	ci left: 5.923293e-01	ci right 5.934045e-01	k: 1903103	n:3210000
KS ci ratio: 1.200989e-01	ci left: 3.118473e-04	ci right 3.519914e-04	k: 1064	n:3210000
MED12   3210000 perm   4327 sec   (742 perm/sec)   p_kst 3.314642e-04   p_cons 5.928670e-01   p_joint 5.616822e-04

Joint ci ratio: 9.211378e-02	ci left: 5.362146e-04	ci right 5.882928e-04	k: 1809	n:3220000
Cons ci ratio: 1.810266e-03	ci left: 5.923358e-01	ci right 5.934094e-01	k: 1909050	n:3220000
KS ci ratio: 1.198180e-01	ci left: 3.123851e-04	ci right 3.524976e-04	k: 1069	n:3220000
MED12   3220000 perm   4352 sec   (740 perm/sec)   p_kst 3.319876e-04   p_cons 5.928727e-01   p_joint 5.618012e-04

Joint ci ratio: 9.206298e-02	ci left: 5.351595e-04	ci right 5.871049e-04	k: 1811	n:3230000
Cons ci ratio: 1.807628e-03	ci left: 5.922921e-01	ci right 5.933640e-01	k: 1914835	n:3230000
KS ci ratio: 1.197062e-01	ci left: 3.120186e-04	ci right 3.520440e-04	k: 1071	n:3230000
MED12   3230000 perm   4377 sec   (738 perm/sec)   p_kst 3.315789e-04   p_cons 5.928282e-01   p_joint 5.606811e-04

Joint ci ratio: 9.193624e-02	ci left: 5.350154e-04	ci right 5.868716e-04	k: 1816	n:3240000
Cons ci ratio: 1.804734e-03	ci left: 5.923204e-01	ci right 5.933906e-01	k: 1920852	n:3240000
KS ci ratio: 1.195390e-01	ci left: 3.119538e-04	ci right 3.519111e-04	k: 1074	n:3240000
MED12   3240000 perm   4402 sec   (736 perm/sec)   p_kst 3.314815e-04   p_cons 5.928556e-01   p_joint 5.604938e-04

Joint ci ratio: 9.175964e-02	ci left: 5.354736e-04	ci right 5.872691e-04	k: 1823	n:3250000
Cons ci ratio: 1.801946e-03	ci left: 5.923238e-01	ci right 5.933924e-01	k: 1926789	n:3250000
KS ci ratio: 1.192068e-01	ci left: 3.127850e-04	ci right 3.527295e-04	k: 1080	n:3250000
MED12   3250000 perm   4427 sec   (734 perm/sec)   p_kst 3.323077e-04   p_cons 5.928582e-01   p_joint 5.609231e-04

Joint ci ratio: 9.160908e-02	ci left: 5.356293e-04	ci right 5.873504e-04	k: 1829	n:3260000
Cons ci ratio: 1.799169e-03	ci left: 5.923275e-01	ci right 5.933944e-01	k: 1932727	n:3260000
KS ci ratio: 1.189320e-01	ci left: 3.133136e-04	ci right 3.532269e-04	k: 1085	n:3260000
MED12   3260000 perm   4452 sec   (732 perm/sec)   p_kst 3.328221e-04   p_cons 5.928610e-01   p_joint 5.610429e-04

Joint ci ratio: 9.140946e-02	ci left: 5.363818e-04	ci right 5.880566e-04	k: 1837	n:3270000
Cons ci ratio: 1.796395e-03	ci left: 5.923339e-01	ci right 5.933992e-01	k: 1938674	n:3270000
KS ci ratio: 1.187681e-01	ci left: 3.132456e-04	ci right 3.530914e-04	k: 1088	n:3270000
MED12   3270000 perm   4478 sec   (730 perm/sec)   p_kst 3.327217e-04   p_cons 5.928667e-01   p_joint 5.617737e-04

Joint ci ratio: 9.121114e-02	ci left: 5.371299e-04	ci right 5.887585e-04	k: 1845	n:3280000
Cons ci ratio: 1.793664e-03	ci left: 5.923321e-01	ci right 5.933958e-01	k: 1944594	n:3280000
KS ci ratio: 1.183881e-01	ci left: 3.143614e-04	ci right 3.542123e-04	k: 1095	n:3280000
MED12   3280000 perm   4503 sec   (728 perm/sec)   p_kst 3.338415e-04   p_cons 5.928640e-01   p_joint 5.625000e-04

Joint ci ratio: 1.053100e-01	ci left: 3.987997e-04	ci right 4.434246e-04	k: 1384	n:3290000
Cons ci ratio: 1.790918e-03	ci left: 5.923379e-01	ci right 5.933999e-01	k: 1950539	n:3290000
KS ci ratio: 1.180118e-01	ci left: 3.154707e-04	ci right 3.553262e-04	k: 1102	n:3290000
MED12   3290000 perm   4529 sec   (726 perm/sec)   p_kst 3.349544e-04   p_cons 5.928690e-01   p_joint 4.206687e-04

Joint ci ratio: 9.079396e-02	ci left: 5.389088e-04	ci right 5.904589e-04	k: 1862	n:3300000
Cons ci ratio: 1.788304e-03	ci left: 5.923112e-01	ci right 5.933717e-01	k: 1956377	n:3300000
KS ci ratio: 1.177984e-01	ci left: 3.156911e-04	ci right 3.554973e-04	k: 1106	n:3300000
MED12   3300000 perm   4554 sec   (725 perm/sec)   p_kst 3.351515e-04   p_cons 5.928415e-01   p_joint 5.642424e-04

Joint ci ratio: 9.067237e-02	ci left: 5.387570e-04	ci right 5.902199e-04	k: 1867	n:3310000
Cons ci ratio: 1.785617e-03	ci left: 5.923076e-01	ci right 5.933665e-01	k: 1962291	n:3310000
KS ci ratio: 1.175861e-01	ci left: 3.159102e-04	ci right 3.556673e-04	k: 1110	n:3310000
MED12   3310000 perm   4579 sec   (723 perm/sec)   p_kst 3.353474e-04   p_cons 5.928372e-01   p_joint 5.640483e-04

Joint ci ratio: 9.059969e-02	ci left: 5.380174e-04	ci right 5.893662e-04	k: 1870	n:3320000
Cons ci ratio: 1.782852e-03	ci left: 5.923285e-01	ci right 5.933858e-01	k: 1968286	n:3320000
KS ci ratio: 1.174805e-01	ci left: 3.155434e-04	ci right 3.552162e-04	k: 1112	n:3320000
MED12   3320000 perm   4606 sec   (721 perm/sec)   p_kst 3.349398e-04   p_cons 5.928572e-01   p_joint 5.632530e-04

Joint ci ratio: 9.033446e-02	ci left: 5.396303e-04	ci right 5.909744e-04	k: 1881	n:3330000
Cons ci ratio: 1.780191e-03	ci left: 5.923243e-01	ci right 5.933800e-01	k: 1974198	n:3330000
KS ci ratio: 1.170082e-01	ci left: 3.172193e-04	ci right 3.569313e-04	k: 1121	n:3330000
MED12   3330000 perm   4631 sec   (719 perm/sec)   p_kst 3.366366e-04   p_cons 5.928523e-01   p_joint 5.648649e-04

Joint ci ratio: 9.021471e-02	ci left: 5.394778e-04	ci right 5.907358e-04	k: 1886	n:3340000
Cons ci ratio: 1.777455e-03	ci left: 5.923438e-01	ci right 5.933979e-01	k: 1980189	n:3340000
KS ci ratio: 1.168521e-01	ci left: 3.171414e-04	ci right 3.567872e-04	k: 1124	n:3340000
MED12   3340000 perm   4657 sec   (717 perm/sec)   p_kst 3.365269e-04   p_cons 5.928710e-01   p_joint 5.646707e-04

Joint ci ratio: 9.011926e-02	ci left: 5.390346e-04	ci right 5.901933e-04	k: 1890	n:3350000
Cons ci ratio: 1.774842e-03	ci left: 5.923334e-01	ci right 5.933859e-01	k: 1986080	n:3350000
KS ci ratio: 1.166449e-01	ci left: 3.173539e-04	ci right 3.569510e-04	k: 1128	n:3350000
MED12   3350000 perm   4683 sec   (715 perm/sec)   p_kst 3.367164e-04   p_cons 5.928597e-01   p_joint 5.641791e-04

Joint ci ratio: 8.981098e-02	ci left: 5.412123e-04	ci right 5.923929e-04	k: 1903	n:3360000
Cons ci ratio: 1.772187e-03	ci left: 5.923372e-01	ci right 5.933882e-01	k: 1992019	n:3360000
KS ci ratio: 1.163875e-01	ci left: 3.178541e-04	ci right 3.574201e-04	k: 1133	n:3360000
MED12   3360000 perm   4709 sec   (714 perm/sec)   p_kst 3.372024e-04   p_cons 5.928628e-01   p_joint 5.663690e-04

Joint ci ratio: 8.969330e-02	ci left: 5.410567e-04	ci right 5.921520e-04	k: 1908	n:3370000
Cons ci ratio: 1.769535e-03	ci left: 5.923438e-01	ci right 5.933932e-01	k: 1997967	n:3370000
KS ci ratio: 1.162850e-01	ci left: 3.174871e-04	ci right 3.569702e-04	k: 1135	n:3370000
MED12   3370000 perm   4734 sec   (712 perm/sec)   p_kst 3.367953e-04   p_cons 5.928685e-01   p_joint 5.661721e-04

Joint ci ratio: 8.962294e-02	ci left: 5.403236e-04	ci right 5.913075e-04	k: 1911	n:3380000
Cons ci ratio: 1.766839e-03	ci left: 5.923654e-01	ci right 5.934132e-01	k: 2003966	n:3380000
KS ci ratio: 1.161828e-01	ci left: 3.171223e-04	ci right 3.565230e-04	k: 1137	n:3380000
MED12   3380000 perm   4760 sec   (710 perm/sec)   p_kst 3.363905e-04   p_cons 5.928893e-01   p_joint 5.653846e-04

Joint ci ratio: 8.955275e-02	ci left: 5.395949e-04	ci right 5.904681e-04	k: 1914	n:3390000
Cons ci ratio: 1.764306e-03	ci left: 5.923455e-01	ci right 5.933918e-01	k: 2009825	n:3390000
KS ci ratio: 1.160299e-01	ci left: 3.170461e-04	ci right 3.563820e-04	k: 1140	n:3390000
MED12   3390000 perm   4786 sec   (708 perm/sec)   p_kst 3.362832e-04   p_cons 5.928687e-01   p_joint 5.646018e-04

Joint ci ratio: 8.934300e-02	ci left: 5.405957e-04	ci right 5.914376e-04	k: 1923	n:3400000
Cons ci ratio: 1.761662e-03	ci left: 5.923593e-01	ci right 5.934041e-01	k: 2015798	n:3400000
KS ci ratio: 1.157765e-01	ci left: 3.175416e-04	ci right 3.568470e-04	k: 1145	n:3400000
MED12   3400000 perm   4813 sec   (706 perm/sec)   p_kst 3.367647e-04   p_cons 5.928818e-01   p_joint 5.655882e-04

Joint ci ratio: 8.922715e-02	ci left: 5.404439e-04	ci right 5.912022e-04	k: 1928	n:3410000
Cons ci ratio: 1.759045e-03	ci left: 5.923689e-01	ci right 5.934121e-01	k: 2021757	n:3410000
KS ci ratio: 1.156253e-01	ci left: 3.174647e-04	ci right 3.567057e-04	k: 1148	n:3410000
MED12   3410000 perm   4839 sec   (705 perm/sec)   p_kst 3.366569e-04   p_cons 5.928906e-01   p_joint 5.653959e-04

Joint ci ratio: 8.915788e-02	ci left: 5.397213e-04	ci right 5.903703e-04	k: 1931	n:3420000
Cons ci ratio: 1.756422e-03	ci left: 5.923835e-01	ci right 5.934251e-01	k: 2027733	n:3420000
KS ci ratio: 1.155750e-01	ci left: 3.168204e-04	ci right 3.559636e-04	k: 1149	n:3420000
MED12   3420000 perm   4865 sec   (703 perm/sec)   p_kst 3.359649e-04   p_cons 5.929044e-01   p_joint 5.646199e-04

Joint ci ratio: 1.030291e-01	ci left: 4.001271e-04	ci right 4.438722e-04	k: 1446	n:3430000
Cons ci ratio: 1.753879e-03	ci left: 5.923787e-01	ci right 5.934188e-01	k: 2033643	n:3430000
KS ci ratio: 1.154747e-01	ci left: 3.164629e-04	ci right 3.555257e-04	k: 1151	n:3430000
MED12   3430000 perm   4891 sec   (701 perm/sec)   p_kst 3.355685e-04   p_cons 5.928988e-01   p_joint 4.215743e-04

Joint ci ratio: 1.029936e-01	ci left: 3.992471e-04	ci right 4.428800e-04	k: 1447	n:3440000
Cons ci ratio: 1.751368e-03	ci left: 5.923684e-01	ci right 5.934070e-01	k: 2039534	n:3440000
KS ci ratio: 1.154246e-01	ci left: 3.158253e-04	ci right 3.547913e-04	k: 1152	n:3440000
MED12   3440000 perm   4918 sec   (699 perm/sec)   p_kst 3.348837e-04   p_cons 5.928878e-01   p_joint 4.206395e-04

Joint ci ratio: 1.027102e-01	ci left: 4.003491e-04	ci right 4.439748e-04	k: 1455	n:3450000
Cons ci ratio: 1.748858e-03	ci left: 5.923611e-01	ci right 5.933982e-01	k: 2045435	n:3450000
KS ci ratio: 1.151752e-01	ci left: 3.163173e-04	ci right 3.552540e-04	k: 1157	n:3450000
MED12   3450000 perm   4944 sec   (698 perm/sec)   p_kst 3.353623e-04   p_cons 5.928797e-01   p_joint 4.217391e-04

Joint ci ratio: 1.025343e-01	ci left: 4.006000e-04	ci right 4.441738e-04	k: 1460	n:3460000
Cons ci ratio: 1.746267e-03	ci left: 5.923789e-01	ci right 5.934146e-01	k: 2051423	n:3460000
KS ci ratio: 1.149767e-01	ci left: 3.165259e-04	ci right 3.554166e-04	k: 1161	n:3460000
MED12   3460000 perm   4971 sec   (696 perm/sec)   p_kst 3.355491e-04   p_cons 5.928968e-01   p_joint 4.219653e-04

Joint ci ratio: 8.854135e-02	ci left: 5.395524e-04	ci right 5.898174e-04	k: 1958	n:3470000
Cons ci ratio: 1.743844e-03	ci left: 5.923532e-01	ci right 5.933873e-01	k: 2057260	n:3470000
KS ci ratio: 1.147793e-01	ci left: 3.167334e-04	ci right 3.555782e-04	k: 1165	n:3470000
MED12   3470000 perm   4998 sec   (694 perm/sec)   p_kst 3.357349e-04   p_cons 5.928703e-01   p_joint 5.642651e-04

Joint ci ratio: 8.836109e-02	ci left: 5.402500e-04	ci right 5.904722e-04	k: 1966	n:3480000
Cons ci ratio: 1.741349e-03	ci left: 5.923505e-01	ci right 5.933832e-01	k: 2063177	n:3480000
KS ci ratio: 1.145830e-01	ci left: 3.169397e-04	ci right 3.557388e-04	k: 1169	n:3480000
MED12   3480000 perm   5025 sec   (693 perm/sec)   p_kst 3.359195e-04   p_cons 5.928670e-01   p_joint 5.649425e-04

Joint ci ratio: 1.019774e-01	ci left: 4.016238e-04	ci right 4.450574e-04	k: 1476	n:3490000
Cons ci ratio: 1.738854e-03	ci left: 5.923508e-01	ci right 5.933820e-01	k: 2069104	n:3490000
KS ci ratio: 1.143876e-01	ci left: 3.171448e-04	ci right 3.558984e-04	k: 1173	n:3490000
MED12   3490000 perm   5052 sec   (691 perm/sec)   p_kst 3.361032e-04   p_cons 5.928665e-01   p_joint 4.229226e-04

Joint ci ratio: 1.019084e-01	ci left: 4.010331e-04	ci right 4.443718e-04	k: 1478	n:3500000
Cons ci ratio: 1.736359e-03	ci left: 5.923542e-01	ci right 5.933839e-01	k: 2075042	n:3500000
KS ci ratio: 1.143389e-01	ci left: 3.165162e-04	ci right 3.551754e-04	k: 1174	n:3500000
MED12   3500000 perm   5079 sec   (689 perm/sec)   p_kst 3.354286e-04   p_cons 5.928691e-01   p_joint 4.222857e-04

Joint ci ratio: 1.018740e-01	ci left: 4.001682e-04	ci right 4.433980e-04	k: 1479	n:3510000
Cons ci ratio: 1.733863e-03	ci left: 5.923607e-01	ci right 5.933890e-01	k: 2080991	n:3510000
KS ci ratio: 1.142904e-01	ci left: 3.158912e-04	ci right 3.544566e-04	k: 1175	n:3510000
MED12   3510000 perm   5106 sec   (687 perm/sec)   p_kst 3.347578e-04   p_cons 5.928749e-01   p_joint 4.213675e-04

Joint ci ratio: 1.017024e-01	ci left: 4.004157e-04	ci right 4.435949e-04	k: 1484	n:3520000
Cons ci ratio: 1.731490e-03	ci left: 5.923360e-01	ci right 5.933627e-01	k: 2086830	n:3520000
KS ci ratio: 1.141449e-01	ci left: 3.158217e-04	ci right 3.543262e-04	k: 1178	n:3520000
MED12   3520000 perm   5133 sec   (686 perm/sec)   p_kst 3.346591e-04   p_cons 5.928494e-01   p_joint 4.215909e-04

Joint ci ratio: 1.015316e-01	ci left: 4.006618e-04	ci right 4.437907e-04	k: 1489	n:3530000
Cons ci ratio: 1.728966e-03	ci left: 5.923561e-01	ci right 5.933814e-01	k: 2092827	n:3530000
KS ci ratio: 1.139517e-01	ci left: 3.160279e-04	ci right 3.544879e-04	k: 1182	n:3530000
MED12   3530000 perm   5161 sec   (684 perm/sec)   p_kst 3.348442e-04   p_cons 5.928688e-01   p_joint 4.218130e-04

Joint ci ratio: 1.014636e-01	ci left: 4.000806e-04	ci right 4.431163e-04	k: 1491	n:3540000
Cons ci ratio: 1.726449e-03	ci left: 5.923773e-01	ci right 5.934011e-01	k: 2098828	n:3540000
KS ci ratio: 1.138555e-01	ci left: 3.156840e-04	ci right 3.540676e-04	k: 1184	n:3540000
MED12   3540000 perm   5188 sec   (682 perm/sec)   p_kst 3.344633e-04   p_cons 5.928893e-01   p_joint 4.211864e-04

Joint ci ratio: 1.012940e-01	ci left: 4.003263e-04	ci right 4.433123e-04	k: 1496	n:3550000
Cons ci ratio: 1.724011e-03	ci left: 5.923794e-01	ci right 5.934018e-01	k: 2104762	n:3550000
KS ci ratio: 1.137117e-01	ci left: 3.156158e-04	ci right 3.539393e-04	k: 1187	n:3550000
MED12   3550000 perm   5215 sec   (681 perm/sec)   p_kst 3.343662e-04   p_cons 5.928907e-01   p_joint 4.214085e-04

Joint ci ratio: 8.751983e-02	ci left: 5.385489e-04	ci right 5.881120e-04	k: 2004	n:3560000
Cons ci ratio: 1.721550e-03	ci left: 5.923906e-01	ci right 5.934115e-01	k: 2110728	n:3560000
KS ci ratio: 1.135207e-01	ci left: 3.158209e-04	ci right 3.541006e-04	k: 1191	n:3560000
MED12   3560000 perm   5242 sec   (679 perm/sec)   p_kst 3.345506e-04   p_cons 5.929011e-01   p_joint 5.629213e-04

Joint ci ratio: 1.009908e-01	ci left: 4.005409e-04	ci right 4.434135e-04	k: 1505	n:3570000
Cons ci ratio: 1.719224e-03	ci left: 5.923669e-01	ci right 5.933865e-01	k: 2116570	n:3570000
KS ci ratio: 1.133307e-01	ci left: 3.160249e-04	ci right 3.542610e-04	k: 1195	n:3570000
MED12   3570000 perm   5270 sec   (677 perm/sec)   p_kst 3.347339e-04   p_cons 5.928768e-01   p_joint 4.215686e-04

Joint ci ratio: 1.008570e-01	ci left: 4.005112e-04	ci right 4.433204e-04	k: 1509	n:3580000
Cons ci ratio: 1.716780e-03	ci left: 5.923794e-01	ci right 5.933975e-01	k: 2122541	n:3580000
KS ci ratio: 1.131889e-01	ci left: 3.159564e-04	ci right 3.541331e-04	k: 1198	n:3580000
MED12   3580000 perm   5298 sec   (676 perm/sec)   p_kst 3.346369e-04   p_cons 5.928885e-01   p_joint 4.215084e-04

Joint ci ratio: 1.007237e-01	ci left: 4.004816e-04	ci right 4.432278e-04	k: 1513	n:3590000
Cons ci ratio: 1.714311e-03	ci left: 5.924016e-01	ci right 5.934183e-01	k: 2128547	n:3590000
KS ci ratio: 1.130005e-01	ci left: 3.161590e-04	ci right 3.542924e-04	k: 1202	n:3590000
MED12   3590000 perm   5325 sec   (674 perm/sec)   p_kst 3.348189e-04   p_cons 5.929100e-01   p_joint 4.214485e-04

Joint ci ratio: 1.005246e-01	ci left: 4.009939e-04	ci right 4.437052e-04	k: 1519	n:3600000
Cons ci ratio: 1.711915e-03	ci left: 5.924059e-01	ci right 5.934212e-01	k: 2134489	n:3600000
KS ci ratio: 1.127197e-01	ci left: 3.169004e-04	ci right 3.550219e-04	k: 1208	n:3600000
MED12   3600000 perm   5353 sec   (673 perm/sec)   p_kst 3.355556e-04   p_cons 5.929136e-01   p_joint 4.219444e-04

Joint ci ratio: 1.004256e-01	ci left: 4.006933e-04	ci right 4.433280e-04	k: 1522	n:3610000
Cons ci ratio: 1.709532e-03	ci left: 5.924096e-01	ci right 5.934235e-01	k: 2140429	n:3610000
KS ci ratio: 1.125801e-01	ci left: 3.168302e-04	ci right 3.548929e-04	k: 1211	n:3610000
MED12   3610000 perm   5381 sec   (671 perm/sec)   p_kst 3.354571e-04   p_cons 5.929166e-01   p_joint 4.216066e-04

Joint ci ratio: 1.002283e-01	ci left: 4.012023e-04	ci right 4.438024e-04	k: 1528	n:3620000
Cons ci ratio: 1.707181e-03	ci left: 5.924070e-01	ci right 5.934194e-01	k: 2146346	n:3620000
KS ci ratio: 1.123948e-01	ci left: 3.170288e-04	ci right 3.550486e-04	k: 1215	n:3620000
MED12   3620000 perm   5409 sec   (669 perm/sec)   p_kst 3.356354e-04   p_cons 5.929133e-01   p_joint 4.220994e-04

Joint ci ratio: 1.001302e-01	ci left: 4.009028e-04	ci right 4.434269e-04	k: 1531	n:3630000
Cons ci ratio: 1.704743e-03	ci left: 5.924316e-01	ci right 5.934426e-01	k: 2152362	n:3630000
KS ci ratio: 1.122564e-01	ci left: 3.169587e-04	ci right 3.549202e-04	k: 1218	n:3630000
MED12   3630000 perm   5437 sec   (668 perm/sec)   p_kst 3.355372e-04   p_cons 5.929372e-01   p_joint 4.217631e-04

Joint ci ratio: 9.993464e-02	ci left: 4.014085e-04	ci right 4.438983e-04	k: 1537	n:3640000
Cons ci ratio: 1.702448e-03	ci left: 5.924187e-01	ci right 5.934284e-01	k: 2158242	n:3640000
KS ci ratio: 1.119811e-01	ci left: 3.176901e-04	ci right 3.556397e-04	k: 1224	n:3640000
MED12   3640000 perm   5464 sec   (666 perm/sec)   p_kst 3.362637e-04   p_cons 5.929236e-01   p_joint 4.222527e-04

Joint ci ratio: 9.980495e-02	ci left: 4.013773e-04	ci right 4.438054e-04	k: 1541	n:3650000
Cons ci ratio: 1.700237e-03	ci left: 5.923845e-01	ci right 5.933928e-01	k: 2164044	n:3650000
KS ci ratio: 1.118899e-01	ci left: 3.173523e-04	ci right 3.552286e-04	k: 1226	n:3650000
MED12   3650000 perm   5493 sec   (665 perm/sec)   p_kst 3.358904e-04   p_cons 5.928888e-01   p_joint 4.221918e-04

Joint ci ratio: 9.964352e-02	ci left: 4.016127e-04	ci right 4.439930e-04	k: 1546	n:3660000
Cons ci ratio: 1.697923e-03	ci left: 5.923823e-01	ci right 5.933892e-01	k: 2169962	n:3660000
KS ci ratio: 1.117079e-01	ci left: 3.175475e-04	ci right 3.553815e-04	k: 1230	n:3660000
MED12   3660000 perm   5521 sec   (663 perm/sec)   p_kst 3.360656e-04   p_cons 5.928858e-01   p_joint 4.224044e-04

Joint ci ratio: 9.954706e-02	ci left: 4.013154e-04	ci right 4.436210e-04	k: 1549	n:3670000
Cons ci ratio: 1.695648e-03	ci left: 5.923715e-01	ci right 5.933771e-01	k: 2175849	n:3670000
KS ci ratio: 1.115720e-01	ci left: 3.174769e-04	ci right 3.552534e-04	k: 1233	n:3670000
MED12   3670000 perm   5549 sec   (661 perm/sec)   p_kst 3.359673e-04   p_cons 5.928744e-01   p_joint 4.220708e-04

Joint ci ratio: 9.938688e-02	ci left: 4.015498e-04	ci right 4.438080e-04	k: 1554	n:3680000
Cons ci ratio: 1.693328e-03	ci left: 5.923764e-01	ci right 5.933806e-01	k: 2181793	n:3680000
KS ci ratio: 1.113916e-01	ci left: 3.176708e-04	ci right 3.554053e-04	k: 1237	n:3680000
MED12   3680000 perm   5576 sec   (660 perm/sec)   p_kst 3.361413e-04   p_cons 5.928785e-01   p_joint 4.222826e-04

Joint ci ratio: 9.925930e-02	ci left: 4.015187e-04	ci right 4.437162e-04	k: 1558	n:3690000
Cons ci ratio: 1.691007e-03	ci left: 5.923842e-01	ci right 5.933870e-01	k: 2187748	n:3690000
KS ci ratio: 1.112121e-01	ci left: 3.178638e-04	ci right 3.555563e-04	k: 1241	n:3690000
MED12   3690000 perm   5604 sec   (658 perm/sec)   p_kst 3.363144e-04   p_cons 5.928856e-01   p_joint 4.222222e-04

Joint ci ratio: 9.913221e-02	ci left: 4.014877e-04	ci right 4.436248e-04	k: 1562	n:3700000
Cons ci ratio: 1.688702e-03	ci left: 5.923903e-01	ci right 5.933917e-01	k: 2193697	n:3700000
KS ci ratio: 1.110781e-01	ci left: 3.177930e-04	ci right 3.554287e-04	k: 1244	n:3700000
MED12   3700000 perm   5633 sec   (657 perm/sec)   p_kst 3.362162e-04   p_cons 5.928911e-01   p_joint 4.221622e-04

Joint ci ratio: 9.906887e-02	ci left: 4.009313e-04	ci right 4.429815e-04	k: 1564	n:3710000
Cons ci ratio: 1.686430e-03	ci left: 5.923894e-01	ci right 5.933895e-01	k: 2199620	n:3710000
KS ci ratio: 1.109890e-01	ci left: 3.174605e-04	ci right 3.550247e-04	k: 1246	n:3710000
MED12   3710000 perm   5662 sec   (655 perm/sec)   p_kst 3.358491e-04   p_cons 5.928895e-01   p_joint 4.215633e-04

Joint ci ratio: 9.900566e-02	ci left: 4.003778e-04	ci right 4.423417e-04	k: 1566	n:3720000
Cons ci ratio: 1.684143e-03	ci left: 5.923954e-01	ci right 5.933942e-01	k: 2205569	n:3720000
KS ci ratio: 1.109445e-01	ci left: 3.168685e-04	ci right 3.543466e-04	k: 1247	n:3720000
MED12   3720000 perm   5691 sec   (654 perm/sec)   p_kst 3.352151e-04   p_cons 5.928949e-01   p_joint 4.209677e-04

Joint ci ratio: 8.551732e-02	ci left: 5.389220e-04	ci right 5.873279e-04	k: 2099	n:3730000
Cons ci ratio: 1.681924e-03	ci left: 5.923846e-01	ci right 5.933820e-01	k: 2211455	n:3730000
KS ci ratio: 1.108114e-01	ci left: 3.168009e-04	ci right 3.542232e-04	k: 1250	n:3730000
MED12   3730000 perm   5719 sec   (652 perm/sec)   p_kst 3.351206e-04   p_cons 5.928834e-01   p_joint 5.627346e-04

Joint ci ratio: 8.541570e-02	ci left: 5.387894e-04	ci right 5.871230e-04	k: 2104	n:3740000
Cons ci ratio: 1.679668e-03	ci left: 5.923869e-01	ci right 5.933830e-01	k: 2217390	n:3740000
KS ci ratio: 1.106788e-01	ci left: 3.167338e-04	ci right 3.541004e-04	k: 1253	n:3740000
MED12   3740000 perm   5747 sec   (651 perm/sec)   p_kst 3.350267e-04   p_cons 5.928850e-01   p_joint 5.625668e-04

Joint ci ratio: 8.535493e-02	ci left: 5.381355e-04	ci right 5.863744e-04	k: 2107	n:3750000
Cons ci ratio: 1.677456e-03	ci left: 5.923791e-01	ci right 5.933738e-01	k: 2223287	n:3750000
KS ci ratio: 1.105466e-01	ci left: 3.166670e-04	ci right 3.539783e-04	k: 1256	n:3750000
MED12   3750000 perm   5775 sec   (649 perm/sec)   p_kst 3.349333e-04   p_cons 5.928765e-01   p_joint 5.618667e-04

Joint ci ratio: 8.531451e-02	ci left: 5.372248e-04	ci right 5.853582e-04	k: 2109	n:3760000
Cons ci ratio: 1.675326e-03	ci left: 5.923503e-01	ci right 5.933437e-01	k: 2229105	n:3760000
KS ci ratio: 1.105027e-01	ci left: 3.160834e-04	ci right 3.533102e-04	k: 1257	n:3760000
MED12   3760000 perm   5804 sec   (648 perm/sec)   p_kst 3.343085e-04   p_cons 5.928471e-01   p_joint 5.609043e-04

Joint ci ratio: 8.527414e-02	ci left: 5.363190e-04	ci right 5.843474e-04	k: 2111	n:3770000
Cons ci ratio: 1.673225e-03	ci left: 5.923158e-01	ci right 5.933079e-01	k: 2234901	n:3770000
KS ci ratio: 1.104589e-01	ci left: 3.155029e-04	ci right 3.526456e-04	k: 1258	n:3770000
MED12   3770000 perm   5832 sec   (646 perm/sec)   p_kst 3.336870e-04   p_cons 5.928119e-01   p_joint 5.599469e-04

Joint ci ratio: 8.511307e-02	ci left: 5.369715e-04	ci right 5.849629e-04	k: 2119	n:3780000
Cons ci ratio: 1.671113e-03	ci left: 5.922868e-01	ci right 5.932776e-01	k: 2240717	n:3780000
KS ci ratio: 1.101966e-01	ci left: 3.162118e-04	ci right 3.533437e-04	k: 1264	n:3780000
MED12   3780000 perm   5862 sec   (645 perm/sec)   p_kst 3.343915e-04   p_cons 5.927823e-01   p_joint 5.605820e-04

Joint ci ratio: 8.499288e-02	ci left: 5.371041e-04	ci right 5.850363e-04	k: 2125	n:3790000
Cons ci ratio: 1.668958e-03	ci left: 5.922727e-01	ci right 5.932623e-01	k: 2246589	n:3790000
KS ci ratio: 1.099794e-01	ci left: 3.166604e-04	ci right 3.537670e-04	k: 1269	n:3790000
MED12   3790000 perm   5890 sec   (643 perm/sec)   p_kst 3.348285e-04   p_cons 5.927675e-01   p_joint 5.606860e-04

Joint ci ratio: 8.489312e-02	ci left: 5.369786e-04	ci right 5.848404e-04	k: 2130	n:3800000
Cons ci ratio: 1.666746e-03	ci left: 5.922774e-01	ci right 5.932656e-01	k: 2252532	n:3800000
KS ci ratio: 1.098066e-01	ci left: 3.168508e-04	ci right 3.539176e-04	k: 1273	n:3800000
MED12   3800000 perm   5918 sec   (642 perm/sec)   p_kst 3.350000e-04   p_cons 5.927716e-01   p_joint 5.605263e-04

Joint ci ratio: 8.489318e-02	ci left: 5.355691e-04	ci right 5.833055e-04	k: 2130	n:3810000
Cons ci ratio: 1.664507e-03	ci left: 5.922925e-01	ci right 5.932795e-01	k: 2258515	n:3810000
KS ci ratio: 1.098067e-01	ci left: 3.160191e-04	ci right 3.529887e-04	k: 1273	n:3810000
MED12   3810000 perm   5947 sec   (641 perm/sec)   p_kst 3.341207e-04   p_cons 5.927861e-01   p_joint 5.590551e-04

Joint ci ratio: 8.469464e-02	ci left: 5.367294e-04	ci right 5.844518e-04	k: 2140	n:3820000
Cons ci ratio: 1.662385e-03	ci left: 5.922765e-01	ci right 5.932621e-01	k: 2264379	n:3820000
KS ci ratio: 1.095918e-01	ci left: 3.164648e-04	ci right 3.534094e-04	k: 1278	n:3820000
MED12   3820000 perm   5976 sec   (639 perm/sec)   p_kst 3.345550e-04   p_cons 5.927694e-01   p_joint 5.602094e-04

Joint ci ratio: 8.457621e-02	ci left: 5.368615e-04	ci right 5.845255e-04	k: 2146	n:3830000
Cons ci ratio: 1.660206e-03	ci left: 5.922793e-01	ci right 5.932637e-01	k: 2270315	n:3830000
KS ci ratio: 1.094208e-01	ci left: 3.166543e-04	ci right 3.535597e-04	k: 1282	n:3830000
MED12   3830000 perm   6005 sec   (638 perm/sec)   p_kst 3.347258e-04   p_cons 5.927715e-01   p_joint 5.603133e-04

Joint ci ratio: 8.443866e-02	ci left: 5.372478e-04	ci right 5.848647e-04	k: 2153	n:3840000
Cons ci ratio: 1.658112e-03	ci left: 5.922597e-01	ci right 5.932428e-01	k: 2276165	n:3840000
KS ci ratio: 1.092082e-01	ci left: 3.170962e-04	ci right 3.539766e-04	k: 1287	n:3840000
MED12   3840000 perm   6034 sec   (636 perm/sec)   p_kst 3.351563e-04   p_cons 5.927513e-01   p_joint 5.606771e-04

Joint ci ratio: 8.432130e-02	ci left: 5.373779e-04	ci right 5.849369e-04	k: 2159	n:3850000
Cons ci ratio: 1.655976e-03	ci left: 5.922550e-01	ci right 5.932368e-01	k: 2282072	n:3850000
KS ci ratio: 1.090390e-01	ci left: 3.172832e-04	ci right 3.541245e-04	k: 1291	n:3850000
MED12   3850000 perm   6063 sec   (635 perm/sec)   p_kst 3.353247e-04   p_cons 5.927460e-01   p_joint 5.607792e-04

Joint ci ratio: 8.414614e-02	ci left: 5.382682e-04	ci right 5.858022e-04	k: 2168	n:3860000
Cons ci ratio: 1.653772e-03	ci left: 5.922724e-01	ci right 5.932529e-01	k: 2288064	n:3860000
KS ci ratio: 1.087867e-01	ci left: 3.179733e-04	ci right 3.548038e-04	k: 1297	n:3860000
MED12   3860000 perm   6093 sec   (634 perm/sec)   p_kst 3.360104e-04   p_cons 5.927627e-01   p_joint 5.616580e-04

Joint ci ratio: 8.402999e-02	ci left: 5.383952e-04	ci right 5.858715e-04	k: 2174	n:3870000
Cons ci ratio: 1.651604e-03	ci left: 5.922819e-01	ci right 5.932611e-01	k: 2294026	n:3870000
KS ci ratio: 1.085361e-01	ci left: 3.186599e-04	ci right 3.554795e-04	k: 1303	n:3870000
MED12   3870000 perm   6122 sec   (632 perm/sec)   p_kst 3.366925e-04   p_cons 5.927716e-01   p_joint 5.617571e-04

Joint ci ratio: 8.395284e-02	ci left: 5.380168e-04	ci right 5.854141e-04	k: 2178	n:3880000
Cons ci ratio: 1.649379e-03	ci left: 5.923104e-01	ci right 5.932884e-01	k: 2300062	n:3880000
KS ci ratio: 1.084529e-01	ci left: 3.183401e-04	ci right 3.550927e-04	k: 1305	n:3880000
MED12   3880000 perm   6151 sec   (631 perm/sec)   p_kst 3.363402e-04   p_cons 5.927995e-01   p_joint 5.613402e-04

Joint ci ratio: 8.385670e-02	ci left: 5.378921e-04	ci right 5.852215e-04	k: 2183	n:3890000
Cons ci ratio: 1.647260e-03	ci left: 5.923103e-01	ci right 5.932870e-01	k: 2305987	n:3890000
KS ci ratio: 1.082872e-01	ci left: 3.185221e-04	ci right 3.552360e-04	k: 1309	n:3890000
MED12   3890000 perm   6181 sec   (629 perm/sec)   p_kst 3.365039e-04   p_cons 5.927987e-01   p_joint 5.611825e-04

Joint ci ratio: 8.368441e-02	ci left: 5.387723e-04	ci right 5.860769e-04	k: 2192	n:3900000
Cons ci ratio: 1.645153e-03	ci left: 5.923091e-01	ci right 5.932846e-01	k: 2311908	n:3900000
KS ci ratio: 1.080811e-01	ci left: 3.189528e-04	ci right 3.556419e-04	k: 1314	n:3900000
MED12   3900000 perm   6211 sec   (628 perm/sec)   p_kst 3.369231e-04   p_cons 5.927969e-01   p_joint 5.620513e-04

Joint ci ratio: 8.353216e-02	ci left: 5.393976e-04	ci right 5.866668e-04	k: 2200	n:3910000
Cons ci ratio: 1.643086e-03	ci left: 5.922985e-01	ci right 5.932727e-01	k: 2317792	n:3910000
KS ci ratio: 1.079581e-01	ci left: 3.188836e-04	ci right 3.555203e-04	k: 1317	n:3910000
MED12   3910000 perm   6241 sec   (626 perm/sec)   p_kst 3.368286e-04   p_cons 5.927857e-01   p_joint 5.626598e-04

Joint ci ratio: 8.341853e-02	ci left: 5.395202e-04	ci right 5.867328e-04	k: 2206	n:3920000
Cons ci ratio: 1.640979e-03	ci left: 5.923020e-01	ci right 5.932749e-01	k: 2323731	n:3920000
KS ci ratio: 1.077538e-01	ci left: 3.193112e-04	ci right 3.559233e-04	k: 1322	n:3920000
MED12   3920000 perm   6271 sec   (625 perm/sec)   p_kst 3.372449e-04   p_cons 5.927885e-01   p_joint 5.627551e-04

Joint ci ratio: 8.328654e-02	ci left: 5.398915e-04	ci right 5.870581e-04	k: 2213	n:3930000
Cons ci ratio: 1.638917e-03	ci left: 5.922945e-01	ci right 5.932662e-01	k: 2329627	n:3930000
KS ci ratio: 1.076319e-01	ci left: 3.192415e-04	ci right 3.558015e-04	k: 1325	n:3930000
MED12   3930000 perm   6301 sec   (624 perm/sec)   p_kst 3.371501e-04   p_cons 5.927804e-01   p_joint 5.631043e-04

Joint ci ratio: 8.311774e-02	ci left: 5.407579e-04	ci right 5.878999e-04	k: 2222	n:3940000
Cons ci ratio: 1.636899e-03	ci left: 5.922766e-01	ci right 5.932471e-01	k: 2335482	n:3940000
KS ci ratio: 1.073892e-01	ci left: 3.199132e-04	ci right 3.564623e-04	k: 1331	n:3940000
MED12   3940000 perm   6331 sec   (622 perm/sec)   p_kst 3.378173e-04   p_cons 5.927619e-01   p_joint 5.639594e-04

Joint ci ratio: 8.304308e-02	ci left: 5.403805e-04	ci right 5.874452e-04	k: 2226	n:3950000
Cons ci ratio: 1.634835e-03	ci left: 5.922745e-01	ci right 5.932438e-01	k: 2341399	n:3950000
KS ci ratio: 1.073087e-01	ci left: 3.195960e-04	ci right 3.560797e-04	k: 1333	n:3950000
MED12   3950000 perm   6361 sec   (621 perm/sec)   p_kst 3.374684e-04   p_cons 5.927592e-01   p_joint 5.635443e-04

Joint ci ratio: 8.287575e-02	ci left: 5.412415e-04	ci right 5.882816e-04	k: 2235	n:3960000
Cons ci ratio: 1.632774e-03	ci left: 5.922737e-01	ci right 5.932418e-01	k: 2347321	n:3960000
KS ci ratio: 1.070282e-01	ci left: 3.205092e-04	ci right 3.569956e-04	k: 1340	n:3960000
MED12   3960000 perm   6391 sec   (620 perm/sec)   p_kst 3.383838e-04   p_cons 5.927578e-01   p_joint 5.643939e-04

Joint ci ratio: 8.282024e-02	ci left: 5.406182e-04	ci right 5.875711e-04	k: 2238	n:3970000
Cons ci ratio: 1.630724e-03	ci left: 5.922719e-01	ci right 5.932388e-01	k: 2353239	n:3970000
KS ci ratio: 1.069087e-01	ci left: 3.204373e-04	ci right 3.568722e-04	k: 1343	n:3970000
MED12   3970000 perm   6421 sec   (618 perm/sec)   p_kst 3.382872e-04   p_cons 5.927554e-01   p_joint 5.637280e-04

Joint ci ratio: 8.276483e-02	ci left: 5.399980e-04	ci right 5.868642e-04	k: 2241	n:3980000
Cons ci ratio: 1.628643e-03	ci left: 5.922819e-01	ci right 5.932476e-01	k: 2359204	n:3980000
KS ci ratio: 1.068292e-01	ci left: 3.201213e-04	ci right 3.564915e-04	k: 1345	n:3980000
MED12   3980000 perm   6452 sec   (617 perm/sec)   p_kst 3.379397e-04   p_cons 5.927648e-01   p_joint 5.630653e-04

Joint ci ratio: 8.265431e-02	ci left: 5.401173e-04	ci right 5.869282e-04	k: 2247	n:3990000
Cons ci ratio: 1.626618e-03	ci left: 5.922774e-01	ci right 5.932418e-01	k: 2365111	n:3990000
KS ci ratio: 1.066708e-01	ci left: 3.202947e-04	ci right 3.566273e-04	k: 1349	n:3990000
MED12   3990000 perm   6481 sec   (616 perm/sec)   p_kst 3.380952e-04   p_cons 5.927596e-01   p_joint 5.631579e-04

Joint ci ratio: 8.250760e-02	ci left: 5.407257e-04	ci right 5.875022e-04	k: 2255	n:4000000
Cons ci ratio: 1.624565e-03	ci left: 5.922836e-01	ci right 5.932468e-01	k: 2371061	n:4000000
KS ci ratio: 1.065525e-01	ci left: 3.202240e-04	ci right 3.565057e-04	k: 1352	n:4000000
MED12   4000000 perm   6512 sec   (614 perm/sec)   p_kst 3.380000e-04   p_cons 5.927653e-01   p_joint 5.637500e-04

Joint ci ratio: 8.237988e-02	ci left: 5.410869e-04	ci right 5.878187e-04	k: 2262	n:4010000
Cons ci ratio: 1.622500e-03	ci left: 5.922955e-01	ci right 5.932575e-01	k: 2377034	n:4010000
KS ci ratio: 1.063953e-01	ci left: 3.203964e-04	ci right 3.566407e-04	k: 1356	n:4010000
MED12   4010000 perm   6542 sec   (613 perm/sec)   p_kst 3.381546e-04   p_cons 5.927766e-01   p_joint 5.640898e-04

Joint ci ratio: 8.232536e-02	ci left: 5.404718e-04	ci right 5.871181e-04	k: 2265	n:4020000
Cons ci ratio: 1.620461e-03	ci left: 5.923019e-01	ci right 5.932627e-01	k: 2382985	n:4020000
KS ci ratio: 1.062779e-01	ci left: 3.203258e-04	ci right 3.565197e-04	k: 1359	n:4020000
MED12   4020000 perm   6572 sec   (612 perm/sec)   p_kst 3.380597e-04   p_cons 5.927823e-01   p_joint 5.634328e-04

Joint ci ratio: 8.221658e-02	ci left: 5.405889e-04	ci right 5.871807e-04	k: 2271	n:4030000
Cons ci ratio: 1.618493e-03	ci left: 5.922894e-01	ci right 5.932490e-01	k: 2388860	n:4030000
KS ci ratio: 1.061609e-01	ci left: 3.202556e-04	ci right 3.563992e-04	k: 1362	n:4030000
MED12   4030000 perm   6603 sec   (610 perm/sec)   p_kst 3.379653e-04   p_cons 5.927692e-01   p_joint 5.635236e-04

Joint ci ratio: 8.209020e-02	ci left: 5.409479e-04	ci right 5.874955e-04	k: 2278	n:4040000
Cons ci ratio: 1.616499e-03	ci left: 5.922871e-01	ci right 5.932455e-01	k: 2394776	n:4040000
KS ci ratio: 1.059280e-01	ci left: 3.209086e-04	ci right 3.570415e-04	k: 1368	n:4040000
MED12   4040000 perm   6634 sec   (609 perm/sec)   p_kst 3.386139e-04   p_cons 5.927663e-01   p_joint 5.638614e-04

Joint ci ratio: 8.200031e-02	ci left: 5.408215e-04	ci right 5.873048e-04	k: 2283	n:4050000
Cons ci ratio: 1.614502e-03	ci left: 5.922875e-01	ci right 5.932447e-01	k: 2400703	n:4050000
KS ci ratio: 1.057350e-01	ci left: 3.213182e-04	ci right 3.574272e-04	k: 1373	n:4050000
MED12   4050000 perm   6665 sec   (608 perm/sec)   p_kst 3.390123e-04   p_cons 5.927662e-01   p_joint 5.637037e-04

Joint ci ratio: 8.191070e-02	ci left: 5.406957e-04	ci right 5.871150e-04	k: 2288	n:4060000
Cons ci ratio: 1.612543e-03	ci left: 5.922790e-01	ci right 5.932351e-01	k: 2406594	n:4060000
KS ci ratio: 1.056198e-01	ci left: 3.212461e-04	ci right 3.573053e-04	k: 1376	n:4060000
MED12   4060000 perm   6696 sec   (606 perm/sec)   p_kst 3.389163e-04   p_cons 5.927571e-01   p_joint 5.635468e-04

Joint ci ratio: 8.182140e-02	ci left: 5.405705e-04	ci right 5.869261e-04	k: 2293	n:4070000
Cons ci ratio: 1.610576e-03	ci left: 5.922751e-01	ci right 5.932300e-01	k: 2412503	n:4070000
KS ci ratio: 1.055049e-01	ci left: 3.211745e-04	ci right 3.571839e-04	k: 1379	n:4070000
MED12   4070000 perm   6727 sec   (605 perm/sec)   p_kst 3.388206e-04   p_cons 5.927526e-01   p_joint 5.633907e-04

Joint ci ratio: 8.175017e-02	ci left: 5.402060e-04	ci right 5.864880e-04	k: 2297	n:4080000
Cons ci ratio: 1.608651e-03	ci left: 5.922606e-01	ci right 5.932143e-01	k: 2418369	n:4080000
KS ci ratio: 1.054286e-01	ci left: 3.208645e-04	ci right 3.568116e-04	k: 1381	n:4080000
MED12   4080000 perm   6758 sec   (604 perm/sec)   p_kst 3.384804e-04   p_cons 5.927375e-01   p_joint 5.629902e-04

Joint ci ratio: 8.167913e-02	ci left: 5.398432e-04	ci right 5.860520e-04	k: 2301	n:4090000
Cons ci ratio: 1.606636e-03	ci left: 5.922755e-01	ci right 5.932280e-01	k: 2424355	n:4090000
KS ci ratio: 1.053524e-01	ci left: 3.205561e-04	ci right 3.564411e-04	k: 1383	n:4090000
MED12   4090000 perm   6790 sec   (602 perm/sec)   p_kst 3.381418e-04   p_cons 5.927518e-01   p_joint 5.625917e-04

Joint ci ratio: 8.160827e-02	ci left: 5.394822e-04	ci right 5.856182e-04	k: 2305	n:4100000
Cons ci ratio: 1.604602e-03	ci left: 5.922981e-01	ci right 5.932495e-01	k: 2430373	n:4100000
KS ci ratio: 1.052764e-01	ci left: 3.202492e-04	ci right 3.560724e-04	k: 1385	n:4100000
MED12   4100000 perm   6821 sec   (601 perm/sec)   p_kst 3.378049e-04   p_cons 5.927739e-01   p_joint 5.621951e-04

Joint ci ratio: 8.144945e-02	ci left: 5.403147e-04	ci right 5.864277e-04	k: 2314	n:4110000
Cons ci ratio: 1.602665e-03	ci left: 5.922937e-01	ci right 5.932439e-01	k: 2436280	n:4110000
KS ci ratio: 1.051626e-01	ci left: 3.201808e-04	ci right 3.559551e-04	k: 1388	n:4110000
MED12   4110000 perm   6852 sec   (600 perm/sec)   p_kst 3.377129e-04   p_cons 5.927689e-01   p_joint 5.630170e-04

Joint ci ratio: 8.136164e-02	ci left: 5.401921e-04	ci right 5.862426e-04	k: 2319	n:4120000
Cons ci ratio: 1.600634e-03	ci left: 5.923201e-01	ci right 5.932691e-01	k: 2442314	n:4120000
KS ci ratio: 1.050115e-01	ci left: 3.203490e-04	ci right 3.560875e-04	k: 1392	n:4120000
MED12   4120000 perm   6883 sec   (599 perm/sec)   p_kst 3.378641e-04   p_cons 5.927947e-01   p_joint 5.628641e-04

Joint ci ratio: 8.132663e-02	ci left: 5.393586e-04	ci right 5.853173e-04	k: 2321	n:4130000
Cons ci ratio: 1.598707e-03	ci left: 5.923170e-01	ci right 5.932649e-01	k: 2448227	n:4130000
KS ci ratio: 1.050116e-01	ci left: 3.195733e-04	ci right 3.552254e-04	k: 1392	n:4130000
MED12   4130000 perm   6914 sec   (597 perm/sec)   p_kst 3.370460e-04   p_cons 5.927910e-01   p_joint 5.619855e-04

Joint ci ratio: 8.125669e-02	ci left: 5.390023e-04	ci right 5.848893e-04	k: 2325	n:4140000
Cons ci ratio: 1.596751e-03	ci left: 5.923249e-01	ci right 5.932716e-01	k: 2454185	n:4140000
KS ci ratio: 1.049363e-01	ci left: 3.192718e-04	ci right 3.548631e-04	k: 1394	n:4140000
MED12   4140000 perm   6945 sec   (596 perm/sec)   p_kst 3.367150e-04   p_cons 5.927983e-01   p_joint 5.615942e-04

Joint ci ratio: 8.115209e-02	ci left: 5.391199e-04	ci right 5.849551e-04	k: 2331	n:4150000
Cons ci ratio: 1.594838e-03	ci left: 5.923216e-01	ci right 5.932672e-01	k: 2460097	n:4150000
KS ci ratio: 1.047862e-01	ci left: 3.194411e-04	ci right 3.549971e-04	k: 1398	n:4150000
MED12   4150000 perm   6976 sec   (595 perm/sec)   p_kst 3.368675e-04   p_cons 5.927945e-01   p_joint 5.616867e-04

Joint ci ratio: 8.111734e-02	ci left: 5.382950e-04	ci right 5.840395e-04	k: 2333	n:4160000
Cons ci ratio: 1.592856e-03	ci left: 5.923416e-01	ci right 5.932861e-01	k: 2466106	n:4160000
KS ci ratio: 1.047114e-01	ci left: 3.191413e-04	ci right 3.546371e-04	k: 1400	n:4160000
MED12   4160000 perm   7007 sec   (594 perm/sec)   p_kst 3.365385e-04   p_cons 5.928139e-01   p_joint 5.608173e-04

Joint ci ratio: 8.099596e-02	ci left: 5.386487e-04	ci right 5.843515e-04	k: 2340	n:4170000
Cons ci ratio: 1.590964e-03	ci left: 5.923364e-01	ci right 5.932798e-01	k: 2472010	n:4170000
KS ci ratio: 1.045622e-01	ci left: 3.193101e-04	ci right 3.547710e-04	k: 1404	n:4170000
MED12   4170000 perm   7037 sec   (593 perm/sec)   p_kst 3.366906e-04   p_cons 5.928082e-01   p_joint 5.611511e-04

Joint ci ratio: 8.094414e-02	ci left: 5.380633e-04	ci right 5.836858e-04	k: 2343	n:4180000
Cons ci ratio: 1.589083e-03	ci left: 5.923300e-01	ci right 5.932722e-01	k: 2477909	n:4180000
KS ci ratio: 1.045250e-01	ci left: 3.187792e-04	ci right 3.541678e-04	k: 1405	n:4180000
MED12   4180000 perm   7068 sec   (591 perm/sec)   p_kst 3.361244e-04   p_cons 5.928012e-01   p_joint 5.605263e-04

Joint ci ratio: 8.078916e-02	ci left: 5.388837e-04	ci right 5.844842e-04	k: 2352	n:4190000
Cons ci ratio: 1.587252e-03	ci left: 5.923103e-01	ci right 5.932514e-01	k: 2483752	n:4190000
KS ci ratio: 1.043767e-01	ci left: 3.189481e-04	ci right 3.543021e-04	k: 1409	n:4190000
MED12   4190000 perm   7100 sec   (590 perm/sec)   p_kst 3.362768e-04   p_cons 5.927809e-01   p_joint 5.613365e-04

Joint ci ratio: 8.072059e-02	ci left: 5.385338e-04	ci right 5.840641e-04	k: 2356	n:4200000
Cons ci ratio: 1.585327e-03	ci left: 5.923214e-01	ci right 5.932614e-01	k: 2489724	n:4200000
KS ci ratio: 1.042658e-01	ci left: 3.188844e-04	ci right 3.541914e-04	k: 1412	n:4200000
MED12   4200000 perm   7131 sec   (589 perm/sec)   p_kst 3.361905e-04   p_cons 5.927914e-01   p_joint 5.609524e-04

Joint ci ratio: 8.061804e-02	ci left: 5.386510e-04	ci right 5.841307e-04	k: 2362	n:4210000
Cons ci ratio: 1.583465e-03	ci left: 5.923153e-01	ci right 5.932542e-01	k: 2495624	n:4210000
KS ci ratio: 1.040818e-01	ci left: 3.192836e-04	ci right 3.545687e-04	k: 1417	n:4210000
MED12   4210000 perm   7163 sec   (588 perm/sec)   p_kst 3.365796e-04   p_cons 5.927848e-01   p_joint 5.610451e-04

Joint ci ratio: 8.058398e-02	ci left: 5.378390e-04	ci right 5.832300e-04	k: 2364	n:4220000
Cons ci ratio: 1.581626e-03	ci left: 5.923040e-01	ci right 5.932418e-01	k: 2501502	n:4220000
KS ci ratio: 1.040818e-01	ci left: 3.185270e-04	ci right 3.537285e-04	k: 1417	n:4220000
MED12   4220000 perm   7194 sec   (587 perm/sec)   p_kst 3.357820e-04   p_cons 5.927730e-01   p_joint 5.601896e-04

Joint ci ratio: 8.049894e-02	ci left: 5.377257e-04	ci right 5.830571e-04	k: 2369	n:4230000
Cons ci ratio: 1.579836e-03	ci left: 5.922801e-01	ci right 5.932167e-01	k: 2507326	n:4230000
KS ci ratio: 1.040452e-01	ci left: 3.180043e-04	ci right 3.531348e-04	k: 1418	n:4230000
MED12   4230000 perm   7227 sec   (585 perm/sec)   p_kst 3.352246e-04   p_cons 5.927485e-01   p_joint 5.600473e-04

Joint ci ratio: 8.039723e-02	ci left: 5.378441e-04	ci right 5.831255e-04	k: 2375	n:4240000
Cons ci ratio: 1.577922e-03	ci left: 5.922958e-01	ci right 5.932314e-01	k: 2513318	n:4240000
KS ci ratio: 1.038623e-01	ci left: 3.184028e-04	ci right 3.535118e-04	k: 1423	n:4240000
MED12   4240000 perm   7259 sec   (584 perm/sec)   p_kst 3.356132e-04   p_cons 5.927637e-01   p_joint 5.601415e-04

Joint ci ratio: 8.027905e-02	ci left: 5.381926e-04	ci right 5.834336e-04	k: 2382	n:4250000
Cons ci ratio: 1.576085e-03	ci left: 5.922901e-01	ci right 5.932246e-01	k: 2519219	n:4250000
KS ci ratio: 1.037531e-01	ci left: 3.183412e-04	ci right 3.534042e-04	k: 1426	n:4250000
MED12   4250000 perm   7292 sec   (583 perm/sec)   p_kst 3.355294e-04   p_cons 5.927574e-01   p_joint 5.604706e-04

Joint ci ratio: 8.011109e-02	ci left: 5.392296e-04	ci right 5.844585e-04	k: 2392	n:4260000
Cons ci ratio: 1.574299e-03	ci left: 5.922708e-01	ci right 5.932042e-01	k: 2525062	n:4260000
KS ci ratio: 1.035356e-01	ci left: 3.189659e-04	ci right 3.540196e-04	k: 1432	n:4260000
MED12   4260000 perm   7324 sec   (582 perm/sec)   p_kst 3.361502e-04   p_cons 5.927376e-01   p_joint 5.615023e-04

Joint ci ratio: 7.999417e-02	ci left: 5.395733e-04	ci right 5.847619e-04	k: 2399	n:4270000
Cons ci ratio: 1.572566e-03	ci left: 5.922371e-01	ci right 5.931694e-01	k: 2530843	n:4270000
KS ci ratio: 1.033914e-01	ci left: 3.191314e-04	ci right 3.541515e-04	k: 1436	n:4270000
MED12   4270000 perm   7356 sec   (580 perm/sec)   p_kst 3.362998e-04   p_cons 5.927033e-01   p_joint 5.618267e-04

Joint ci ratio: 7.991097e-02	ci left: 5.394574e-04	ci right 5.845872e-04	k: 2404	n:4280000
Cons ci ratio: 1.570750e-03	ci left: 5.922306e-01	ci right 5.931618e-01	k: 2536740	n:4280000
KS ci ratio: 1.033196e-01	ci left: 3.188410e-04	ci right 3.538034e-04	k: 1438	n:4280000
MED12   4280000 perm   7389 sec   (579 perm/sec)   p_kst 3.359813e-04   p_cons 5.926963e-01   p_joint 5.616822e-04

Joint ci ratio: 7.979492e-02	ci left: 5.397991e-04	ci right 5.848888e-04	k: 2411	n:4290000
Cons ci ratio: 1.568894e-03	ci left: 5.922388e-01	ci right 5.931690e-01	k: 2542700	n:4290000
KS ci ratio: 1.032120e-01	ci left: 3.187790e-04	ci right 3.536961e-04	k: 1441	n:4290000
MED12   4290000 perm   7420 sec   (578 perm/sec)   p_kst 3.358974e-04   p_cons 5.927040e-01   p_joint 5.620047e-04

Joint ci ratio: 7.974537e-02	ci left: 5.392275e-04	ci right 5.842402e-04	k: 2414	n:4300000
Cons ci ratio: 1.567057e-03	ci left: 5.922429e-01	ci right 5.931719e-01	k: 2548642	n:4300000
KS ci ratio: 1.031763e-01	ci left: 3.182642e-04	ci right 3.531121e-04	k: 1442	n:4300000
MED12   4300000 perm   7453 sec   (577 perm/sec)   p_kst 3.353488e-04   p_cons 5.927074e-01   p_joint 5.613953e-04

Joint ci ratio: 7.966295e-02	ci left: 5.391133e-04	ci right 5.840678e-04	k: 2419	n:4310000
Cons ci ratio: 1.565209e-03	ci left: 5.922522e-01	ci right 5.931801e-01	k: 2554607	n:4310000
KS ci ratio: 1.030336e-01	ci left: 3.184299e-04	ci right 3.532448e-04	k: 1446	n:4310000
MED12   4310000 perm   7486 sec   (576 perm/sec)   p_kst 3.354988e-04   p_cons 5.927162e-01   p_joint 5.612529e-04

Joint ci ratio: 7.954797e-02	ci left: 5.394535e-04	ci right 5.843684e-04	k: 2426	n:4320000
Cons ci ratio: 1.563346e-03	ci left: 5.922685e-01	ci right 5.931953e-01	k: 2560602	n:4320000
KS ci ratio: 1.029270e-01	ci left: 3.183694e-04	ci right 3.531394e-04	k: 1449	n:4320000
MED12   4320000 perm   7518 sec   (575 perm/sec)   p_kst 3.354167e-04   p_cons 5.927319e-01   p_joint 5.615741e-04

Joint ci ratio: 7.953163e-02	ci left: 5.384340e-04	ci right 5.832544e-04	k: 2427	n:4330000
Cons ci ratio: 1.561550e-03	ci left: 5.922659e-01	ci right 5.931917e-01	k: 2566516	n:4330000
KS ci ratio: 1.029270e-01	ci left: 3.176341e-04	ci right 3.523239e-04	k: 1449	n:4330000
MED12   4330000 perm   7550 sec   (574 perm/sec)   p_kst 3.346420e-04   p_cons 5.927289e-01   p_joint 5.605081e-04

Joint ci ratio: 7.944987e-02	ci left: 5.383226e-04	ci right 5.830855e-04	k: 2432	n:4340000
Cons ci ratio: 1.559759e-03	ci left: 5.922636e-01	ci right 5.931883e-01	k: 2572431	n:4340000
KS ci ratio: 1.028207e-01	ci left: 3.175757e-04	ci right 3.522211e-04	k: 1452	n:4340000
MED12   4340000 perm   7581 sec   (572 perm/sec)   p_kst 3.345622e-04   p_cons 5.927260e-01   p_joint 5.603687e-04

Joint ci ratio: 7.938466e-02	ci left: 5.379863e-04	ci right 5.826829e-04	k: 2436	n:4350000
Cons ci ratio: 1.557987e-03	ci left: 5.922574e-01	ci right 5.931811e-01	k: 2578329	n:4350000
KS ci ratio: 1.028207e-01	ci left: 3.168456e-04	ci right 3.514114e-04	k: 1452	n:4350000
MED12   4350000 perm   7614 sec   (571 perm/sec)   p_kst 3.337931e-04   p_cons 5.927193e-01   p_joint 5.600000e-04

Joint ci ratio: 7.930335e-02	ci left: 5.378764e-04	ci right 5.825160e-04	k: 2441	n:4360000
Cons ci ratio: 1.556177e-03	ci left: 5.922648e-01	ci right 5.931874e-01	k: 2584286	n:4360000
KS ci ratio: 1.027147e-01	ci left: 3.167893e-04	ci right 3.513111e-04	k: 1455	n:4360000
MED12   4360000 perm   7647 sec   (570 perm/sec)   p_kst 3.337156e-04   p_cons 5.927261e-01   p_joint 5.598624e-04

Joint ci ratio: 7.925471e-02	ci left: 5.373185e-04	ci right 5.818831e-04	k: 2444	n:4370000
Cons ci ratio: 1.554409e-03	ci left: 5.922609e-01	ci right 5.931824e-01	k: 2590194	n:4370000
KS ci ratio: 1.026795e-01	ci left: 3.162873e-04	ci right 3.507419e-04	k: 1456	n:4370000
MED12   4370000 perm   7680 sec   (569 perm/sec)   p_kst 3.331808e-04   p_cons 5.927217e-01   p_joint 5.592677e-04

Joint ci ratio: 7.912534e-02	ci left: 5.378820e-04	ci right 5.824172e-04	k: 2452	n:4380000
Cons ci ratio: 1.552629e-03	ci left: 5.922630e-01	ci right 5.931835e-01	k: 2596128	n:4380000
KS ci ratio: 1.024687e-01	ci left: 3.168999e-04	ci right 3.513461e-04	k: 1462	n:4380000
MED12   4380000 perm   7713 sec   (568 perm/sec)   p_kst 3.337900e-04   p_cons 5.927233e-01   p_joint 5.598174e-04

Joint ci ratio: 7.904483e-02	ci left: 5.377732e-04	ci right 5.822520e-04	k: 2457	n:4390000
Cons ci ratio: 1.550904e-03	ci left: 5.922498e-01	ci right 5.931692e-01	k: 2601995	n:4390000
KS ci ratio: 1.023289e-01	ci left: 3.170659e-04	ci right 3.514803e-04	k: 1466	n:4390000
MED12   4390000 perm   7747 sec   (567 perm/sec)   p_kst 3.339408e-04   p_cons 5.927096e-01   p_joint 5.596811e-04

Joint ci ratio: 7.891649e-02	ci left: 5.383333e-04	ci right 5.827828e-04	k: 2465	n:4400000
Cons ci ratio: 1.549158e-03	ci left: 5.922448e-01	ci right 5.931632e-01	k: 2607898	n:4400000
KS ci ratio: 1.021203e-01	ci left: 3.176741e-04	ci right 3.520800e-04	k: 1472	n:4400000
MED12   4400000 perm   7781 sec   (565 perm/sec)   p_kst 3.345455e-04   p_cons 5.927041e-01   p_joint 5.602273e-04

Joint ci ratio: 7.877284e-02	ci left: 5.391132e-04	ci right 5.835423e-04	k: 2474	n:4410000
Cons ci ratio: 1.547408e-03	ci left: 5.922428e-01	ci right 5.931602e-01	k: 2613814	n:4410000
KS ci ratio: 1.020164e-01	ci left: 3.176166e-04	ci right 3.519792e-04	k: 1475	n:4410000
MED12   4410000 perm   7814 sec   (564 perm/sec)   p_kst 3.344671e-04   p_cons 5.927016e-01   p_joint 5.609977e-04

Joint ci ratio: 7.870928e-02	ci left: 5.387806e-04	ci right 5.831449e-04	k: 2478	n:4420000
Cons ci ratio: 1.545659e-03	ci left: 5.922427e-01	ci right 5.931590e-01	k: 2619738	n:4420000
KS ci ratio: 1.019474e-01	ci left: 3.173390e-04	ci right 3.516469e-04	k: 1477	n:4420000
MED12   4420000 perm   7848 sec   (563 perm/sec)   p_kst 3.341629e-04   p_cons 5.927009e-01   p_joint 5.606335e-04

Joint ci ratio: 7.866172e-02	ci left: 5.382283e-04	ci right 5.825191e-04	k: 2481	n:4430000
Cons ci ratio: 1.543991e-03	ci left: 5.922190e-01	ci right 5.931343e-01	k: 2625558	n:4430000
KS ci ratio: 1.019474e-01	ci left: 3.166226e-04	ci right 3.508531e-04	k: 1477	n:4430000
MED12   4430000 perm   7881 sec   (562 perm/sec)   p_kst 3.334086e-04   p_cons 5.926767e-01   p_joint 5.600451e-04

Joint ci ratio: 7.863008e-02	ci left: 5.374576e-04	ci right 5.816664e-04	k: 2483	n:4440000
Cons ci ratio: 1.542204e-03	ci left: 5.922343e-01	ci right 5.931485e-01	k: 2631550	n:4440000
KS ci ratio: 1.019475e-01	ci left: 3.159095e-04	ci right 3.500629e-04	k: 1477	n:4440000
MED12   4440000 perm   7915 sec   (561 perm/sec)   p_kst 3.326577e-04   p_cons 5.926914e-01   p_joint 5.592342e-04

Joint ci ratio: 7.858266e-02	ci left: 5.369108e-04	ci right 5.810467e-04	k: 2486	n:4450000
Cons ci ratio: 1.540476e-03	ci left: 5.922330e-01	ci right 5.931462e-01	k: 2637469	n:4450000
KS ci ratio: 1.018442e-01	ci left: 3.158566e-04	ci right 3.499676e-04	k: 1480	n:4450000
MED12   4450000 perm   7948 sec   (560 perm/sec)   p_kst 3.325843e-04   p_cons 5.926897e-01   p_joint 5.586517e-04

Joint ci ratio: 7.850379e-02	ci left: 5.368060e-04	ci right 5.808870e-04	k: 2491	n:4460000
Cons ci ratio: 1.538802e-03	ci left: 5.922167e-01	ci right 5.931289e-01	k: 2643321	n:4460000
KS ci ratio: 1.017755e-01	ci left: 3.155854e-04	ci right 3.496428e-04	k: 1482	n:4460000
MED12   4460000 perm   7982 sec   (559 perm/sec)   p_kst 3.322870e-04   p_cons 5.926729e-01   p_joint 5.585202e-04

Joint ci ratio: 7.840945e-02	ci left: 5.369210e-04	ci right 5.809561e-04	k: 2497	n:4470000
Cons ci ratio: 1.537079e-03	ci left: 5.922175e-01	ci right 5.931287e-01	k: 2649249	n:4470000
KS ci ratio: 1.016385e-01	ci left: 3.157515e-04	ci right 3.497782e-04	k: 1486	n:4470000
MED12   4470000 perm   8016 sec   (558 perm/sec)   p_kst 3.324385e-04   p_cons 5.926732e-01   p_joint 5.586130e-04

Joint ci ratio: 7.831545e-02	ci left: 5.370356e-04	ci right 5.810248e-04	k: 2503	n:4480000
Cons ci ratio: 1.535341e-03	ci left: 5.922248e-01	ci right 5.931349e-01	k: 2655206	n:4480000
KS ci ratio: 1.014680e-01	ci left: 3.161344e-04	ci right 3.501418e-04	k: 1491	n:4480000
MED12   4480000 perm   8050 sec   (557 perm/sec)   p_kst 3.328125e-04   p_cons 5.926799e-01   p_joint 5.587054e-04

Joint ci ratio: 7.823738e-02	ci left: 5.369313e-04	ci right 5.808662e-04	k: 2508	n:4490000
Cons ci ratio: 1.533732e-03	ci left: 5.921930e-01	ci right 5.931022e-01	k: 2660988	n:4490000
KS ci ratio: 1.013323e-01	ci left: 3.162986e-04	ci right 3.502755e-04	k: 1495	n:4490000
MED12   4490000 perm   8084 sec   (555 perm/sec)   p_kst 3.329621e-04   p_cons 5.926477e-01   p_joint 5.585746e-04

Joint ci ratio: 7.815955e-02	ci left: 5.368275e-04	ci right 5.807082e-04	k: 2513	n:4500000
Cons ci ratio: 1.532048e-03	ci left: 5.921870e-01	ci right 5.930951e-01	k: 2666885	n:4500000
KS ci ratio: 1.012646e-01	ci left: 3.160289e-04	ci right 3.499528e-04	k: 1497	n:4500000
MED12   4500000 perm   8118 sec   (554 perm/sec)   p_kst 3.326667e-04   p_cons 5.926411e-01   p_joint 5.584444e-04

Joint ci ratio: 7.800452e-02	ci left: 5.378112e-04	ci right 5.816811e-04	k: 2523	n:4510000
Cons ci ratio: 1.530308e-03	ci left: 5.922002e-01	ci right 5.931074e-01	k: 2672869	n:4510000
KS ci ratio: 1.010288e-01	ci left: 3.168410e-04	ci right 3.507682e-04	k: 1504	n:4510000
MED12   4510000 perm   8151 sec   (553 perm/sec)   p_kst 3.334812e-04   p_cons 5.926539e-01   p_joint 5.594235e-04

Joint ci ratio: 7.791197e-02	ci left: 5.379229e-04	ci right 5.817475e-04	k: 2529	n:4520000
Cons ci ratio: 1.528616e-03	ci left: 5.922002e-01	ci right 5.931063e-01	k: 2678793	n:4520000
KS ci ratio: 1.009283e-01	ci left: 3.167870e-04	ci right 3.506726e-04	k: 1507	n:4520000
MED12   4520000 perm   8185 sec   (552 perm/sec)   p_kst 3.334071e-04   p_cons 5.926533e-01   p_joint 5.595133e-04

Joint ci ratio: 7.785047e-02	ci left: 5.376013e-04	ci right 5.813635e-04	k: 2533	n:4530000
Cons ci ratio: 1.526961e-03	ci left: 5.921902e-01	ci right 5.930953e-01	k: 2684672	n:4530000
KS ci ratio: 1.008614e-01	ci left: 3.165181e-04	ci right 3.503511e-04	k: 1509	n:4530000
MED12   4530000 perm   8219 sec   (551 perm/sec)   p_kst 3.331126e-04   p_cons 5.926428e-01   p_joint 5.591611e-04

Joint ci ratio: 7.774315e-02	ci left: 5.379290e-04	ci right 5.816548e-04	k: 2540	n:4540000
Cons ci ratio: 1.525262e-03	ci left: 5.921959e-01	ci right 5.931000e-01	k: 2690622	n:4540000
KS ci ratio: 1.006616e-01	ci left: 3.171092e-04	ci right 3.509343e-04	k: 1515	n:4540000
MED12   4540000 perm   8254 sec   (550 perm/sec)   p_kst 3.337004e-04   p_cons 5.926480e-01   p_joint 5.594714e-04

Joint ci ratio: 7.763627e-02	ci left: 5.382553e-04	ci right 5.819448e-04	k: 2547	n:4550000
Cons ci ratio: 1.523647e-03	ci left: 5.921767e-01	ci right 5.930799e-01	k: 2696459	n:4550000
KS ci ratio: 1.004960e-01	ci left: 3.174835e-04	ci right 3.512896e-04	k: 1520	n:4550000
MED12   4550000 perm   8287 sec   (549 perm/sec)   p_kst 3.340659e-04   p_cons 5.926284e-01   p_joint 5.597802e-04

Joint ci ratio: 7.759063e-02	ci left: 5.377200e-04	ci right 5.813393e-04	k: 2550	n:4560000
Cons ci ratio: 1.522005e-03	ci left: 5.921679e-01	ci right 5.930701e-01	k: 2702343	n:4560000
KS ci ratio: 1.004300e-01	ci left: 3.172148e-04	ci right 3.509688e-04	k: 1522	n:4560000
MED12   4560000 perm   8322 sec   (548 perm/sec)   p_kst 3.337719e-04   p_cons 5.926191e-01   p_joint 5.592105e-04

Joint ci ratio: 7.742384e-02	ci left: 5.389038e-04	ci right 5.825208e-04	k: 2561	n:4570000
Cons ci ratio: 1.520342e-03	ci left: 5.921673e-01	ci right 5.930685e-01	k: 2708264	n:4570000
KS ci ratio: 1.002327e-01	ci left: 3.178007e-04	ci right 3.515467e-04	k: 1528	n:4570000
MED12   4570000 perm   8356 sec   (547 perm/sec)   p_kst 3.343545e-04   p_cons 5.926179e-01   p_joint 5.603939e-04

Joint ci ratio: 7.736348e-02	ci left: 5.385836e-04	ci right 5.821392e-04	k: 2565	n:4580000
Cons ci ratio: 1.518687e-03	ci left: 5.921660e-01	ci right 5.930662e-01	k: 2714182	n:4580000
KS ci ratio: 1.001346e-01	ci left: 3.177454e-04	ci right 3.514505e-04	k: 1531	n:4580000
MED12   4580000 perm   8391 sec   (546 perm/sec)   p_kst 3.342795e-04   p_cons 5.926162e-01   p_joint 5.600437e-04

Joint ci ratio: 7.719814e-02	ci left: 5.397604e-04	ci right 5.833137e-04	k: 2576	n:4590000
Cons ci ratio: 1.517058e-03	ci left: 5.921582e-01	ci right 5.930574e-01	k: 2720070	n:4590000
KS ci ratio: 9.987408e-02	ci left: 3.187525e-04	ci right 3.524713e-04	k: 1539	n:4590000
MED12   4590000 perm   8424 sec   (545 perm/sec)   p_kst 3.352941e-04   p_cons 5.926078e-01   p_joint 5.612200e-04

Outputting figure to mutsig2_images.part000000000104/MED12.2_6714_4590000_0.00033529_0.59261_0.00056122.png
                gene_name: MED12
               theta_stop: 0.100 
                    nperm: 4590000 
                     p_ks: 0.00034 
        ci_ks_bounds_left: 0.00032 
       ci_ks_bounds_right: 0.00035 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.00056 
     ci_joint_bounds_left: 0.00054 
    ci_joint_bounds_right: 0.00058 

Current progress: 25 percent done.
MED15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.696349e-02	ci left: 8.350072e-01	ci right 8.493928e-01	k: 8423	n:10000
Cons ci ratio: 2.199815e-02	ci left: 7.520101e-01	ci right 7.688379e-01	k: 7605	n:10000
KS ci ratio: 3.920196e-02	ci left: 4.900514e-01	ci right 5.097486e-01	k: 4999	n:10000
MED15   10000 perm   1 sec   (6695 perm/sec)   p_kst 4.999000e-01   p_cons 7.605000e-01   p_joint 8.423000e-01

Outputting figure to mutsig2_images.part000000000104/MED15.2_2439_10000_0.4999_0.7605_0.8423.png
                gene_name: MED15
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 50 percent done.
MEF2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.366775e-01	ci left: 7.078334e-02	ci right 8.126524e-02	k: 759	n:10000
Cons ci ratio: 6.453735e-02	ci left: 2.607228e-01	ci right 2.782117e-01	k: 2694	n:10000
KS ci ratio: 2.729973e-01	ci left: 1.743979e-02	ci right 2.304459e-02	k: 201	n:10000
MEF2A   10000 perm   1 sec   (7345 perm/sec)   p_kst 2.010000e-02   p_cons 2.694000e-01   p_joint 7.590000e-02

Joint ci ratio: 2.995741e-02	ci left: 4.542724e-01	ci right 4.681388e-01	k: 9224	n:20000
Cons ci ratio: 4.822177e-02	ci left: 2.423244e-01	ci right 2.543488e-01	k: 4966	n:20000
KS ci ratio: 1.913577e-01	ci left: 1.858107e-02	ci right 2.256002e-02	k: 410	n:20000
MEF2A   20000 perm   3 sec   (6496 perm/sec)   p_kst 2.050000e-02   p_cons 2.483000e-01   p_joint 4.612000e-01

Joint ci ratio: 5.460470e-02	ci left: 1.425822e-01	ci right 1.506197e-01	k: 4397	n:30000
Cons ci ratio: 3.940997e-02	ci left: 2.430880e-01	ci right 2.528941e-01	k: 7439	n:30000
KS ci ratio: 1.561795e-01	ci left: 1.895846e-02	ci right 2.220199e-02	k: 616	n:30000
MEF2A   30000 perm   5 sec   (6174 perm/sec)   p_kst 2.053333e-02   p_cons 2.479667e-01   p_joint 1.465667e-01

Joint ci ratio: 4.755557e-02	ci left: 1.417361e-01	ci right 1.486655e-01	k: 5807	n:40000
Cons ci ratio: 3.415526e-02	ci left: 2.434756e-01	ci right 2.519611e-01	k: 9908	n:40000
KS ci ratio: 1.362456e-01	ci left: 1.889206e-02	ci right 2.167819e-02	k: 810	n:40000
MEF2A   40000 perm   7 sec   (5968 perm/sec)   p_kst 2.025000e-02   p_cons 2.477000e-01   p_joint 1.451750e-01

Joint ci ratio: 4.238493e-02	ci left: 1.429750e-01	ci right 1.491861e-01	k: 7303	n:50000
Cons ci ratio: 3.066997e-02	ci left: 2.424686e-01	ci right 2.500409e-01	k: 12312	n:50000
KS ci ratio: 1.219696e-01	ci left: 1.900419e-02	ci right 2.149195e-02	k: 1011	n:50000
MEF2A   50000 perm   9 sec   (5819 perm/sec)   p_kst 2.022000e-02   p_cons 2.462400e-01   p_joint 1.460600e-01

Joint ci ratio: 3.890747e-02	ci left: 1.418774e-01	ci right 1.475236e-01	k: 8681	n:60000
Cons ci ratio: 2.793329e-02	ci left: 2.436527e-01	ci right 2.505718e-01	k: 14826	n:60000
KS ci ratio: 1.111280e-01	ci left: 1.918650e-02	ci right 2.146023e-02	k: 1218	n:60000
MEF2A   60000 perm   11 sec   (5691 perm/sec)   p_kst 2.030000e-02   p_cons 2.471000e-01   p_joint 1.446833e-01

Joint ci ratio: 3.600265e-02	ci left: 1.422149e-01	ci right 1.474431e-01	k: 10137	n:70000
Cons ci ratio: 2.588423e-02	ci left: 2.435810e-01	ci right 2.499828e-01	k: 17274	n:70000
KS ci ratio: 1.020877e-01	ci left: 1.957446e-02	ci right 2.169411e-02	k: 1443	n:70000
MEF2A   70000 perm   13 sec   (5577 perm/sec)   p_kst 2.061429e-02   p_cons 2.467714e-01   p_joint 1.448143e-01

Joint ci ratio: 3.649312e-02	ci left: 1.237450e-01	ci right 1.283572e-01	k: 10083	n:80000
Cons ci ratio: 2.424335e-02	ci left: 2.433174e-01	ci right 2.493010e-01	k: 19704	n:80000
KS ci ratio: 9.506251e-02	ci left: 1.982222e-02	ci right 2.181275e-02	k: 1664	n:80000
MEF2A   80000 perm   15 sec   (5446 perm/sec)   p_kst 2.080000e-02   p_cons 2.463000e-01   p_joint 1.260375e-01

Outputting figure to mutsig2_images.part000000000104/MEF2A.2_1700_80000_0.0208_0.2463_0.12604.png
                gene_name: MEF2A
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 75 percent done.
METTL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.117616e-02	ci left: 1.488410e-01	ci right 1.631600e-01	k: 1559	n:10000
Cons ci ratio: 1.404114e-01	ci left: 6.720239e-02	ci right 7.744844e-02	k: 722	n:10000
KS ci ratio: 6.181557e-02	ci left: 2.778498e-01	ci right 2.956746e-01	k: 2867	n:10000
METTL3   10000 perm   1 sec   (7428 perm/sec)   p_kst 2.867000e-01   p_cons 7.220000e-02   p_joint 1.559000e-01

Joint ci ratio: 1.117562e-01	ci left: 5.470261e-02	ci right 6.122664e-02	k: 1158	n:20000
Cons ci ratio: 1.146732e-01	ci left: 5.202621e-02	ci right 5.840388e-02	k: 1103	n:20000
KS ci ratio: 4.414172e-02	ci left: 2.765157e-01	ci right 2.890475e-01	k: 5655	n:20000
METTL3   20000 perm   3 sec   (6549 perm/sec)   p_kst 2.827500e-01   p_cons 5.515000e-02   p_joint 5.790000e-02

Joint ci ratio: 9.106868e-02	ci left: 5.551169e-02	ci right 6.084094e-02	k: 1744	n:30000
Cons ci ratio: 9.451003e-02	ci left: 5.166456e-02	ci right 5.682220e-02	k: 1626	n:30000
KS ci ratio: 3.631002e-02	ci left: 2.746920e-01	ci right 2.848840e-01	k: 8393	n:30000
METTL3   30000 perm   5 sec   (6210 perm/sec)   p_kst 2.797667e-01   p_cons 5.420000e-02   p_joint 5.813333e-02

Outputting figure to mutsig2_images.part000000000104/METTL3.2_1787_30000_0.27977_0.0542_0.058133.png
                gene_name: METTL3
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.061 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000104
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 104 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1727>
Subject: Job 9877556: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1727>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000105> was used as the working directory.
Started at Fri Oct  5 22:46:34 2012
Results reported at Fri Oct  5 22:47:40 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000105.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000105.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 105  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000105.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     57.24 sec.
    Max Memory :      1953 MB
    Max Swap   :      4719 MB

    Max Processes  :         7
    Max Threads    :        71

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
105
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 105
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 105: processing genes 9431 - 9520
Calculating significance of each gene.
Using projection method.
9431	MFAP5	1
9432	MFF	1
9433	MFGE8	1
9434	MFHAS1	1
9435	MFI2	1
9436	MFN1	1
9437	MFN2	1.209978e-01
9438	MFNG	1
9439	MFRP	1
9440	MFSD1	1
9441	MFSD10	1
9442	MFSD11	1
9443	MFSD2A	1
9444	MFSD2B	1
9445	MFSD3	1
9446	MFSD4	5.935998e-02
9447	MFSD5	1
9448	MFSD6	1
9449	MFSD6L	1
9450	MFSD7	1.973343e-01
9451	MFSD8	1.279202e-01
In gene MFSD9 the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 1449    n = 1	mu =   9.08e-07
9452	MFSD9	1.622356e-01
9453	MGA	1
9454	MGAM	1
9455	MGAT1	1
9456	MGAT2	1
9457	MGAT3	1
9458	MGAT4A	1
9459	MGAT4B	1
9460	MGAT4C	3.884245e-02
9461	MGAT5	1
9462	MGAT5B	1
9463	MGC26647	1
9464	MGC29506	1
9465	MGC42105	1
9466	MGC70857	1
9467	MGC87042	1
9468	MGEA5	1
9469	MGLL	1
9470	MGMT	1
9471	MGP	1
9472	MGRN1	1
9473	MGST1	1
9474	MGST2	1
9475	MGST3	1
9476	MIA	1
9477	MIA2	1
9478	MIA3	4.088591e-01
9479	MIB1	1
9480	MIB2	1.317529e-01
9481	MICA	1
9482	MICAL1	1
9483	MICAL2	2.100747e-01
9484	MICAL3	1
9485	MICALCL	1
9486	MICALL1	1
9487	MICALL2	1
9488	MICB	1.134902e-01
9489	MID1	1
9490	MID1IP1	4.932950e-02
9491	MID2	1
9492	MIDN	1
9493	MIER1	1
9494	MIER2	1
9495	MIER3	1
9496	MIF	1
9497	MIF4GD	1
9498	MIIP	1.334433e-01
9499	MINA	1
9500	MINK1	1
9501	MINPP1	1
9502	MIOS	1
9503	MIOX	1
9504	MIP	3.898411e-02
9505	MIPEP	1.621762e-01
9506	MIPOL1	1
9507	MIS12	1
9508	MITD1	1
9509	MITF	1
9510	MIXL1	1
9511	MKI67	5.314582e-02
9512	MKI67IP	1
9513	MKKS	1
9514	MKL1	1
9515	MKL2	1
9516	MKLN1	1.150545e-01
9517	MKNK1	1
9518	MKNK2	1
9519	MKRN1	4.486546e-02
9520	MKRN2	1
Done

Running MutSig 2:
Scatter job 105: processing genes 9431 - 9520
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MKI67
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.851041e-02	ci left: 4.989503e-01	ci right 5.186445e-01	k: 5088	n:10000
Cons ci ratio: 4.354932e-02	ci left: 4.377208e-01	ci right 4.573098e-01	k: 4475	n:10000
KS ci ratio: 3.865703e-02	ci left: 4.970503e-01	ci right 5.167457e-01	k: 5069	n:10000
MKI67   10000 perm   3 sec   (3714 perm/sec)   p_kst 5.069000e-01   p_cons 4.475000e-01   p_joint 5.088000e-01

Outputting figure to mutsig2_images.part000000000105/MKI67.3_9827_10000_0.5069_0.4475_0.5088.png
                gene_name: MKI67
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000105
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 105 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1640>
Subject: Job 9877559: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1640>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000106> was used as the working directory.
Started at Fri Oct  5 22:46:38 2012
Results reported at Fri Oct  5 22:49:17 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000106.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000106.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 106  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000106.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    160.33 sec.
    Max Memory :      2255 MB
    Max Swap   :      4695 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
106
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 106
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 106: processing genes 9521 - 9611
Calculating significance of each gene.
Using projection method.
9521	MKRN3	1.059643e-01
9522	MKS1	1
9523	MKX	1
9524	MLANA	1
9525	MLC1	1
9526	MLEC	8.345563e-02
9527	MLF1	1
9528	MLF1IP	1
9529	MLF2	1
9530	MLH1	8.322628e-02
9531	MLH3	1.938604e-01
9532	MLKL	1
9533	MLL	1
9534	MLL2	2.287638e-01
In gene MLL3 the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 14807   n = 1	mu =   6.75e-07
9535	MLL3	3.057611e-04
9536	MLL4	1
9537	MLL5	1
9538	MLLT1	1
In gene MLLT10 the following bins exceed PROBCAP:
    PRAD-CH-5761	categ 6	N = 3172    n = 1	mu =   2.99e-07
9539	MLLT10	4.059815e-03
9540	MLLT11	1
9541	MLLT3	1.077455e-01
9542	MLLT4	2.858559e-01
9543	MLLT6	1
9544	MLN	1
9545	MLNR	1
9546	MLPH	1
9547	MLST8	1
9548	MLX	1
9549	MLXIP	1
9550	MLXIPL	1
9551	MLYCD	1
9552	MMAA	1
9553	MMAB	1
9554	MMACHC	1
9555	MMADHC	1
9556	MMD	1
9557	MMD2	1
9558	MME	1.694239e-01
9559	MMEL1	1
9560	MMGT1	1
9561	MMP1	1
9562	MMP10	1
9563	MMP11	1
9564	MMP12	1.023407e-02
9565	MMP13	1
9566	MMP14	1
9567	MMP15	1
9568	MMP16	1
9569	MMP17	1
9570	MMP19	1
9571	MMP2	1
9572	MMP20	1
9573	MMP21	1
9574	MMP24	1.653267e-02
9575	MMP25	1
9576	MMP26	1
9577	MMP27	1
9578	MMP28	1
9579	MMP3	7.852633e-02
9580	MMP7	1
9581	MMP8	1
9582	MMP9	1
9583	MMRN1	2.639151e-01
9584	MMRN2	2.862812e-01
9585	MMS19	1
9586	MN1	1
9587	MNAT1	1
9588	MND1	1
9589	MNDA	4.105907e-02
9590	MNS1	1
9591	MNT	1
9592	MNX1	1
9593	MOAP1	1
9594	MOB2	1
9595	MOBKL1A	1
9596	MOBKL1B	1
9597	MOBKL2A	1
9598	MOBKL2B	1
9599	MOBKL2C	1
9600	MOBKL3	1
9601	MOBP	1
In gene MOCOS the following bins exceed PROBCAP:
    PRAD-G9-6371	categ 6	N = 2581    n = 1	mu =   1.34e-07
9602	MOCOS	7.138647e-04
9603	MOCS1	9.396988e-02
9604	MOCS2	1
9605	MOCS3	1
9606	MOG	1
9607	MOGAT1	1
9608	MOGAT2	1
9609	MOGAT3	1
9610	MOGS	1
9611	MON1A	1
Done

Running MutSig 2:
Scatter job 106: processing genes 9521 - 9611
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MLL3
Processing conservation and coverage...
66% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.525785e-02	ci left: 1.670085e-01	ci right 1.819816e-01	k: 1744	n:10000
Cons ci ratio: 2.338006e-02	ci left: 7.288590e-01	ci right 7.462025e-01	k: 7376	n:10000
KS ci ratio: 1.615502e-01	ci left: 5.109258e-02	ci right 6.016847e-02	k: 555	n:10000
MLL3   10000 perm   4 sec   (2705 perm/sec)   p_kst 5.550000e-02   p_cons 7.376000e-01   p_joint 1.744000e-01

Joint ci ratio: 7.638710e-02	ci left: 1.118880e-01	ci right 1.208239e-01	k: 2326	n:20000
Cons ci ratio: 1.715240e-02	ci left: 7.168414e-01	ci right 7.292937e-01	k: 14462	n:20000
KS ci ratio: 1.135347e-01	ci left: 5.304786e-02	ci right 5.948191e-02	k: 1124	n:20000
MLL3   20000 perm   12 sec   (1654 perm/sec)   p_kst 5.620000e-02   p_cons 7.231000e-01   p_joint 1.163000e-01

Joint ci ratio: 6.257833e-02	ci left: 1.120354e-01	ci right 1.193059e-01	k: 3469	n:30000
Cons ci ratio: 1.392107e-02	ci left: 7.204118e-01	ci right 7.305445e-01	k: 21765	n:30000
KS ci ratio: 9.222460e-02	ci left: 5.417457e-02	ci right 5.944500e-02	k: 1703	n:30000
MLL3   30000 perm   17 sec   (1816 perm/sec)   p_kst 5.676667e-02   p_cons 7.255000e-01   p_joint 1.156333e-01

Outputting figure to mutsig2_images.part000000000106/MLL3.8_14972_30000_0.056767_0.7255_0.11563.png
                gene_name: MLL3
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.057 
        ci_ks_bounds_left: 0.054 
       ci_ks_bounds_right: 0.059 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 20 percent done.
MLL2
Processing conservation and coverage...
59% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.208325e-02	ci left: 5.891158e-01	ci right 6.084267e-01	k: 5988	n:10000
Cons ci ratio: 6.613156e-02	ci left: 2.513249e-01	ci right 2.686151e-01	k: 2599	n:10000
KS ci ratio: 1.491369e-02	ci left: 8.669281e-01	ci right 8.800535e-01	k: 8736	n:10000
MLL2   10000 perm   4 sec   (2799 perm/sec)   p_kst 8.736000e-01   p_cons 2.599000e-01   p_joint 5.988000e-01

Outputting figure to mutsig2_images.part000000000106/MLL2.3_16830_10000_0.8736_0.2599_0.5988.png
                gene_name: MLL2
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 40 percent done.
MLLT10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.062909e-02	ci left: 3.652005e-01	ci right 3.842725e-01	k: 3747	n:10000
Cons ci ratio: 3.065987e-02	ci left: 6.108046e-01	ci right 6.299252e-01	k: 6204	n:10000
KS ci ratio: 6.352037e-02	ci left: 2.669579e-01	ci right 2.845729e-01	k: 2757	n:10000
MLLT10   10000 perm   2 sec   (5386 perm/sec)   p_kst 2.757000e-01   p_cons 6.204000e-01   p_joint 3.747000e-01

Outputting figure to mutsig2_images.part000000000106/MLLT10.3_3172_10000_0.2757_0.6204_0.3747.png
                gene_name: MLLT10
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 60 percent done.
MOCOS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.319292e-02	ci left: 7.319911e-01	ci right 7.492685e-01	k: 7407	n:10000
Cons ci ratio: 3.654802e-02	ci left: 5.250651e-01	ci right 5.447146e-01	k: 5349	n:10000
KS ci ratio: 1.180587e-02	ci left: 9.113176e-01	ci right 9.222382e-01	k: 9169	n:10000
MOCOS   10000 perm   2 sec   (5438 perm/sec)   p_kst 9.169000e-01   p_cons 5.349000e-01   p_joint 7.407000e-01

Outputting figure to mutsig2_images.part000000000106/MOCOS.3_2727_10000_0.9169_0.5349_0.7407.png
                gene_name: MOCOS
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 80 percent done.
MMP12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.648733e-01	ci left: 4.907401e-02	ci right 5.798834e-02	k: 534	n:10000
Cons ci ratio: 3.338274e-01	ci left: 1.133070e-02	ci right 1.595903e-02	k: 135	n:10000
KS ci ratio: 2.699424e-02	ci left: 6.690435e-01	ci right 6.874525e-01	k: 6783	n:10000
MMP12   10000 perm   1 sec   (6693 perm/sec)   p_kst 6.783000e-01   p_cons 1.350000e-02   p_joint 5.340000e-02

Joint ci ratio: 9.348920e-02	ci left: 7.701023e-02	ci right 8.461216e-02	k: 1615	n:20000
Cons ci ratio: 2.160014e-01	ci left: 1.444865e-02	ci right 1.799402e-02	k: 323	n:20000
KS ci ratio: 1.921103e-02	ci left: 6.689612e-01	ci right 6.819877e-01	k: 13510	n:20000
MMP12   20000 perm   3 sec   (5914 perm/sec)   p_kst 6.755000e-01   p_cons 1.615000e-02   p_joint 8.075000e-02

Joint ci ratio: 7.066365e-02	ci left: 8.973636e-02	ci right 9.634269e-02	k: 2790	n:30000
Cons ci ratio: 1.734854e-01	ci left: 1.528021e-02	ci right 1.821445e-02	k: 501	n:30000
KS ci ratio: 1.568473e-02	ci left: 6.702021e-01	ci right 6.808306e-01	k: 20266	n:30000
MMP12   30000 perm   5 sec   (5620 perm/sec)   p_kst 6.755333e-01   p_cons 1.670000e-02   p_joint 9.300000e-02

Joint ci ratio: 6.137265e-02	ci left: 8.970250e-02	ci right 9.540681e-02	k: 3701	n:40000
Cons ci ratio: 1.548151e-01	ci left: 1.455261e-02	ci right 1.701842e-02	k: 630	n:40000
KS ci ratio: 1.358913e-02	ci left: 6.707362e-01	ci right 6.799383e-01	k: 27014	n:40000
MMP12   40000 perm   7 sec   (5426 perm/sec)   p_kst 6.753500e-01   p_cons 1.575000e-02   p_joint 9.252500e-02

Joint ci ratio: 5.748037e-02	ci left: 8.264863e-02	ci right 8.755966e-02	k: 4254	n:50000
Cons ci ratio: 1.393488e-01	ci left: 1.449336e-02	ci right 1.668340e-02	k: 778	n:50000
KS ci ratio: 1.212876e-02	ci left: 6.721587e-01	ci right 6.803809e-01	k: 33814	n:50000
MMP12   50000 perm   9 sec   (5272 perm/sec)   p_kst 6.762800e-01   p_cons 1.556000e-02   p_joint 8.508000e-02

Joint ci ratio: 7.520795e-02	ci left: 4.168523e-02	ci right 4.495913e-02	k: 2598	n:60000
Cons ci ratio: 1.274712e-01	ci left: 1.452672e-02	ci right 1.652054e-02	k: 930	n:60000
KS ci ratio: 1.106688e-02	ci left: 6.727233e-01	ci right 6.802263e-01	k: 40589	n:60000
MMP12   60000 perm   12 sec   (5114 perm/sec)   p_kst 6.764833e-01   p_cons 1.550000e-02   p_joint 4.330000e-02

Joint ci ratio: 8.451803e-02	ci left: 2.855276e-02	ci right 3.108641e-02	k: 2086	n:70000
Cons ci ratio: 1.181906e-01	ci left: 1.455626e-02	ci right 1.639850e-02	k: 1082	n:70000
KS ci ratio: 1.024256e-02	ci left: 6.731490e-01	ci right 6.800935e-01	k: 47364	n:70000
MMP12   70000 perm   14 sec   (5004 perm/sec)   p_kst 6.766286e-01   p_cons 1.545714e-02   p_joint 2.980000e-02

Joint ci ratio: 7.655062e-02	ci left: 3.052124e-02	ci right 3.296287e-02	k: 2538	n:80000
Cons ci ratio: 1.104537e-01	ci left: 1.464319e-02	ci right 1.636721e-02	k: 1239	n:80000
KS ci ratio: 9.581946e-03	ci left: 6.733334e-01	ci right 6.798288e-01	k: 54127	n:80000
MMP12   80000 perm   16 sec   (4901 perm/sec)   p_kst 6.765875e-01   p_cons 1.548750e-02   p_joint 3.172500e-02

Joint ci ratio: 7.215147e-02	ci left: 3.060860e-02	ci right 3.291059e-02	k: 2857	n:90000
Cons ci ratio: 1.043651e-01	ci left: 1.462726e-02	ci right 1.624864e-02	k: 1388	n:90000
KS ci ratio: 9.043331e-03	ci left: 6.730649e-01	ci right 6.791904e-01	k: 60852	n:90000
MMP12   90000 perm   19 sec   (4802 perm/sec)   p_kst 6.761333e-01   p_cons 1.542222e-02   p_joint 3.174444e-02

Joint ci ratio: 6.856672e-02	ci left: 3.056371e-02	ci right 3.274356e-02	k: 3164	n:100000
Cons ci ratio: 9.944666e-02	ci left: 1.453857e-02	ci right 1.606973e-02	k: 1529	n:100000
KS ci ratio: 8.580308e-03	ci left: 6.731695e-01	ci right 6.789803e-01	k: 67608	n:100000
MMP12   100000 perm   21 sec   (4710 perm/sec)   p_kst 6.760800e-01   p_cons 1.529000e-02   p_joint 3.164000e-02

Outputting figure to mutsig2_images.part000000000106/MMP12.2_1452_100000_0.67608_0.01529_0.03164.png
                gene_name: MMP12
               theta_stop: 0.099 
                    nperm: 100000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.033 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000106
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 106 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1711>
Subject: Job 9877562: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1711>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000107> was used as the working directory.
Started at Fri Oct  5 22:47:34 2012
Results reported at Fri Oct  5 22:49:19 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000107.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000107.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 107  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000107.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    119.10 sec.
    Max Memory :      1932 MB
    Max Swap   :      4626 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
107
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 107
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 107: processing genes 9612 - 9702
Calculating significance of each gene.
Using projection method.
9612	MON1B	1
9613	MON2	1
9614	MORC1	2.355592e-01
9615	MORC2	1
9616	MORC3	1
9617	MORC4	1
9618	MORF4	1
9619	MORF4L1	8.797012e-03
9620	MORF4L2	1
9621	MORN1	1
9622	MORN3	1
9623	MORN4	1
9624	MORN5	1
9625	MOS	1
9626	MOSC1	1
9627	MOSC2	1
9628	MOSPD1	1
9629	MOSPD2	1
9630	MOSPD3	1
9631	MOV10	1
9632	MOV10L1	1
9633	MOXD1	1.489184e-02
9634	MPDU1	1
9635	MPDZ	1.384456e-01
9636	MPEG1	2.144447e-03
9637	MPG	1
9638	MPHOSPH10	1
9639	MPHOSPH6	1
9640	MPHOSPH8	1
9641	MPHOSPH9	1
9642	MPI	1
9643	MPL	1
9644	MPND	1
9645	MPO	1
9646	MPP1	1
9647	MPP2	1
9648	MPP3	2.128634e-01
9649	MPP4	1
9650	MPP5	1
9651	MPP6	1
9652	MPP7	1
9653	MPPE1	1
9654	MPPED1	1
9655	MPPED2	1
9656	MPRIP	1
9657	MPST	1
9658	MPV17	1
9659	MPV17L	1
9660	MPV17L2	1
9661	MPZ	1
9662	MPZL1	1
9663	MPZL2	1
9664	MPZL3	1
9665	MR1	1
9666	MRAP	1
9667	MRAP2	1
9668	MRAS	1
9669	MRC1	1
9670	MRC1L1	1
9671	MRC2	1
9672	MRE11A	1
9673	MREG	1
9674	MRFAP1	1
9675	MRFAP1L1	1
9676	MRGPRD	1
9677	MRGPRE	1
9678	MRGPRF	1
9679	MRGPRX1	1.193337e-01
9680	MRGPRX2	1.174150e-01
9681	MRGPRX3	8.224062e-02
9682	MRGPRX4	6.977209e-02
9683	MRI1	6.640564e-02
9684	MRM1	1
9685	MRO	1
9686	MRP63	1
9687	MRPL1	8.348708e-02
9688	MRPL10	1
9689	MRPL11	1
9690	MRPL12	1
9691	MRPL13	1
9692	MRPL14	1
9693	MRPL15	5.997313e-02
9694	MRPL16	1
9695	MRPL17	1
9696	MRPL18	1
9697	MRPL19	1
9698	MRPL2	1
9699	MRPL20	5.443181e-02
9700	MRPL21	1
9701	MRPL22	1
9702	MRPL23	1
Done

Running MutSig 2:
Scatter job 107: processing genes 9612 - 9702
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MPEG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.158783e-02	ci left: 9.142005e-01	ci right 9.249535e-01	k: 9197	n:10000
Cons ci ratio: 2.994821e-02	ci left: 6.218575e-01	ci right 6.408660e-01	k: 6314	n:10000
KS ci ratio: 2.080668e-02	ci left: 7.719526e-01	ci right 7.882839e-01	k: 7802	n:10000
MPEG1   10000 perm   2 sec   (5690 perm/sec)   p_kst 7.802000e-01   p_cons 6.314000e-01   p_joint 9.197000e-01

Outputting figure to mutsig2_images.part000000000107/MPEG1.3_2155_10000_0.7802_0.6314_0.9197.png
                gene_name: MPEG1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 33 percent done.
MOXD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.827749e-02	ci left: 6.483055e-01	ci right 6.670026e-01	k: 6577	n:10000
KS ci ratio: 2.191363e-02	ci left: 7.534265e-01	ci right 7.702207e-01	k: 7619	n:10000
MOXD1   10000 perm   2 sec   (5749 perm/sec)   p_kst 7.619000e-01   p_cons 6.577000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000107/MOXD1.2_1890_10000_0.7619_0.6577_1.png
                gene_name: MOXD1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
MPDZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.396016e-02	ci left: 7.191628e-01	ci right 7.367042e-01	k: 7280	n:10000
Cons ci ratio: 4.933479e-03	ci left: 9.818827e-01	ci right 9.868293e-01	k: 9845	n:10000
KS ci ratio: 4.189691e-02	ci left: 4.568828e-01	ci right 4.765366e-01	k: 4667	n:10000
MPDZ   10000 perm   2 sec   (4620 perm/sec)   p_kst 4.667000e-01   p_cons 9.845000e-01   p_joint 7.280000e-01

Outputting figure to mutsig2_images.part000000000107/MPDZ.2_6306_10000_0.4667_0.9845_0.728.png
                gene_name: MPDZ
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000107
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 107 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1727>
Subject: Job 9877571: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1727>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000108> was used as the working directory.
Started at Fri Oct  5 22:47:34 2012
Results reported at Fri Oct  5 22:48:36 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000108.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000108.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 108  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000108.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     57.93 sec.
    Max Memory :       866 MB
    Max Swap   :      3673 MB

    Max Processes  :         7
    Max Threads    :        67

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
108
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 108
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 108: processing genes 9703 - 9792
Calculating significance of each gene.
Using projection method.
9703	MRPL24	1
9704	MRPL27	1
9705	MRPL28	1
9706	MRPL3	1
9707	MRPL30	3.099054e-02
9708	MRPL32	1
9709	MRPL33	1
9710	MRPL34	1
9711	MRPL35	1
9712	MRPL36	1
9713	MRPL37	1
9714	MRPL38	1.081025e-01
9715	MRPL39	1
9716	MRPL4	1
9717	MRPL40	1
9718	MRPL41	1
9719	MRPL42	1
9720	MRPL43	1
9721	MRPL44	1
9722	MRPL45	1
9723	MRPL46	1
9724	MRPL47	1
9725	MRPL48	1
9726	MRPL49	1
In gene MRPL50 the following bins exceed PROBCAP:
    PRAD-CH-5789	categ 6	N = 485     n = 1	mu =   1.98e-07
9727	MRPL50	9.638063e-03
9728	MRPL51	1
9729	MRPL52	1
9730	MRPL53	1
9731	MRPL54	1
9732	MRPL55	1
9733	MRPL9	1
9734	MRPS10	1
9735	MRPS11	1
9736	MRPS12	1
9737	MRPS14	1
9738	MRPS15	1
9739	MRPS16	1
9740	MRPS17	1
9741	MRPS18A	1
9742	MRPS18B	1
9743	MRPS18C	1
9744	MRPS2	5.001444e-02
9745	MRPS21	1
9746	MRPS22	1
9747	MRPS23	1
9748	MRPS24	1
9749	MRPS25	1
9750	MRPS26	1
9751	MRPS27	1
9752	MRPS28	1
9753	MRPS30	2.755828e-02
9754	MRPS31	1
9755	MRPS33	1
9756	MRPS34	1
9757	MRPS35	1
9758	MRPS36	1
9759	MRPS5	1
9760	MRPS6	1
9761	MRPS7	1
9762	MRPS9	9.016298e-02
9763	MRRF	1
9764	MRS2	1
9765	MRTO4	1
9766	MRVI1	1.863781e-01
9767	MS4A1	1
9768	MS4A10	1
9769	MS4A12	8.549248e-02
9770	MS4A13	1
9771	MS4A14	1
9772	MS4A15	1
9773	MS4A2	1
9774	MS4A3	1
9775	MS4A4A	1
9776	MS4A5	1
9777	MS4A6A	1
9778	MS4A6E	1
9779	MS4A7	1
9780	MS4A8B	1
9781	MSC	6.832039e-02
9782	MSGN1	7.088515e-02
9783	MSH2	1
9784	MSH3	2.976972e-02
9785	MSH4	1
9786	MSH5	1
9787	MSH6	1.424354e-02
9788	MSI1	1
9789	MSI2	1
9790	MSL1	1
9791	MSL2	1.478303e-01
9792	MSL3	1
Done

Running MutSig 2:
Scatter job 108: processing genes 9703 - 9792
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MSH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.599129e-02	ci left: 6.854671e-01	ci right 7.036194e-01	k: 6946	n:10000
Cons ci ratio: 3.321714e-02	ci left: 5.722601e-01	ci right 5.916921e-01	k: 5820	n:10000
KS ci ratio: 9.323853e-02	ci left: 1.431522e-01	ci right 1.572522e-01	k: 1501	n:10000
MSH3   10000 perm   2 sec   (6101 perm/sec)   p_kst 1.501000e-01   p_cons 5.820000e-01   p_joint 6.946000e-01

Outputting figure to mutsig2_images.part000000000108/MSH3.2_3510_10000_0.1501_0.582_0.6946.png
                gene_name: MSH3
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 50 percent done.
MSH6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.156329e-02	ci left: 7.592958e-01	ci right 7.759480e-01	k: 7677	n:10000
Cons ci ratio: 6.939316e-03	ci left: 9.661506e-01	ci right 9.729722e-01	k: 9697	n:10000
KS ci ratio: 4.996592e-02	ci left: 3.713681e-01	ci right 3.905013e-01	k: 3809	n:10000
MSH6   10000 perm   2 sec   (6152 perm/sec)   p_kst 3.809000e-01   p_cons 9.697000e-01   p_joint 7.677000e-01

Outputting figure to mutsig2_images.part000000000108/MSH6.2_4123_10000_0.3809_0.9697_0.7677.png
                gene_name: MSH6
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000108
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 108 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1645>
Subject: Job 9877576: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1645>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000109> was used as the working directory.
Started at Fri Oct  5 22:47:34 2012
Results reported at Fri Oct  5 22:49:19 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000109.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000109.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 109  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000109.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    105.03 sec.
    Max Memory :      2062 MB
    Max Swap   :      4663 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
109
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 109
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 109: processing genes 9793 - 9883
Calculating significance of each gene.
Using projection method.
9793	MSL3L2	1
9794	MSLN	2.112918e-01
9795	MSLNL	3.790145e-02
9796	MSMB	1
9797	MSMP	4.844795e-02
9798	MSN	1
9799	MSR1	1
9800	MSRA	1
9801	MSRB2	1
9802	MSRB3	1
9803	MST1	1
9804	MST1R	1
9805	MST4	1.127061e-01
In gene MSTN the following bins exceed PROBCAP:
    PRAD-EJ-5508	categ 6	N = 1140    n = 1	mu =   2.32e-07
9806	MSTN	3.397327e-02
9807	MSTO1	1
9808	MSX1	1
9809	MSX2	1
9810	MT1A	1
9811	MT1B	1
9812	MT1E	1
9813	MT1F	1
9814	MT1G	1
9815	MT1H	1
9816	MT1M	1
9817	MT1X	1
9818	MT2A	1
9819	MT3	1
9820	MT4	1
9821	MTA1	1
9822	MTA2	1
9823	MTA3	1
9824	MTAP	1
9825	MTBP	1
9826	MTCH1	1
9827	MTCH2	1
9828	MTCP1	1
9829	MTCP1NB	1
9830	MTDH	1
9831	MTERF	1
9832	MTERFD1	1
9833	MTERFD2	1
9834	MTERFD3	1
9835	MTF1	1
9836	MTF2	1
9837	MTFMT	1
9838	MTFR1	1
9839	MTG1	1
9840	MTHFD1	8.302929e-02
9841	MTHFD1L	1.473528e-01
9842	MTHFD2	1
9843	MTHFD2L	1
9844	MTHFR	6.506268e-02
9845	MTHFS	1
9846	MTHFSD	1
9847	MTIF2	1
9848	MTIF3	1
9849	MTL5	1
9850	MTM1	1
9851	MTMR1	1
9852	MTMR10	1
9853	MTMR11	1
9854	MTMR12	2.383281e-01
9855	MTMR14	1
9856	MTMR15	1
9857	MTMR2	1
9858	MTMR3	1
9859	MTMR4	1
9860	MTMR6	1
9861	MTMR7	1
9862	MTMR8	1
9863	MTMR9	1
9864	MTNR1A	1.058305e-01
9865	MTNR1B	1
9866	MTO1	1
9867	MTOR	2.384150e-01
9868	MTP18	1
9869	MTPAP	1
9870	MTPN	1
9871	MTR	1
9872	MTRF1	1
9873	MTRF1L	1
9874	MTRR	1
9875	MTSS1	1.021174e-01
9876	MTSS1L	1
9877	MTTP	4.116819e-02
9878	MTUS1	2.729376e-01
9879	MTUS2	1
9880	MTX1	7.070126e-02
9881	MTX2	1
9882	MTX3	1
9883	MUC1	1
Done

Running MutSig 2:
Scatter job 109: processing genes 9793 - 9883
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MSLNL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.128764e-02	ci left: 4.641722e-01	ci right 4.838429e-01	k: 4740	n:10000
Cons ci ratio: 5.121749e-02	ci left: 3.598301e-01	ci right 3.788461e-01	k: 3693	n:10000
KS ci ratio: 1.567378e-02	ci left: 8.552887e-01	ci right 8.688996e-01	k: 8622	n:10000
MSLNL   10000 perm   2 sec   (5048 perm/sec)   p_kst 8.622000e-01   p_cons 3.693000e-01   p_joint 4.740000e-01

Outputting figure to mutsig2_images.part000000000109/MSLNL.2_3226_10000_0.8622_0.3693_0.474.png
                gene_name: MSLNL
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 33 percent done.
MTOR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.615832e-02	ci left: 8.477417e-01	ci right 8.616509e-01	k: 8548	n:10000
Cons ci ratio: 7.530342e-02	ci left: 2.051084e-01	ci right 2.212590e-01	k: 2131	n:10000
KS ci ratio: 1.455385e-02	ci left: 8.723452e-01	ci right 8.852332e-01	k: 8789	n:10000
MTOR   10000 perm   2 sec   (4045 perm/sec)   p_kst 8.789000e-01   p_cons 2.131000e-01   p_joint 8.548000e-01

Outputting figure to mutsig2_images.part000000000109/MTOR.2_7878_10000_0.8789_0.2131_0.8548.png
                gene_name: MTOR
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 67 percent done.
MTTP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.287374e-02	ci left: 8.967235e-01	ci right 9.084408e-01	k: 9027	n:10000
KS ci ratio: 1.317906e-02	ci left: 8.924146e-01	ci right 9.043522e-01	k: 8985	n:10000
MTTP   10000 perm   2 sec   (5394 perm/sec)   p_kst 8.985000e-01   p_cons 9.027000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000109/MTTP.2_2757_10000_0.8985_0.9027_1.png
                gene_name: MTTP
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000109
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 109 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1724>
Subject: Job 9877586: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1724>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000110> was used as the working directory.
Started at Fri Oct  5 22:47:34 2012
Results reported at Sat Oct  6 01:33:29 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000110.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000110.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 110  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000110.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   9930.82 sec.
    Max Memory :      2337 MB
    Max Swap   :      4770 MB

    Max Processes  :         7
    Max Threads    :        71

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
110
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 110
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 110: processing genes 9884 - 9974
Calculating significance of each gene.
Using projection method.
9884	MUC13	1
9885	MUC15	1
9886	MUC16	2.440293e-01
9887	MUC17	1.592313e-03
9888	MUC2	1
9889	MUC20	1
9890	MUC21	3.215295e-03
9891	MUC4	9.239276e-13
9892	MUC5B	1
9893	MUC6	2.716949e-01
9894	MUC7	1
9895	MUCL1	1
9896	MUDENG	1
9897	MUL1	1
9898	MUM1	1
9899	MUM1L1	1
9900	MURC	1
9901	MUS81	1
9902	MUSK	1
9903	MUSTN1	1
9904	MUT	1
9905	MUTED	1
9906	MUTYH	1
9907	MVD	1
9908	MVK	1
9909	MVP	1
9910	MX1	7.369113e-02
9911	MX2	1.807005e-01
9912	MXD1	1
9913	MXD3	1
9914	MXD4	1
9915	MXI1	1
9916	MXRA5	3.017518e-01
9917	MXRA7	1
9918	MXRA8	1
9919	MYADM	1
9920	MYB	1
9921	MYBBP1A	1
9922	MYBL1	9.379384e-02
9923	MYBL2	1
9924	MYBPC1	1.578979e-01
9925	MYBPC2	2.764597e-01
9926	MYBPC3	2.084625e-01
9927	MYBPH	1
9928	MYBPHL	1
9929	MYC	1
9930	MYCBP	1
9931	MYCBP2	4.691828e-01
9932	MYCBPAP	1
9933	MYCL1	1
9934	MYCN	1
9935	MYCT1	3.466236e-02
9936	MYD88	1
9937	MYEF2	1
9938	MYEOV	1.771285e-02
9939	MYEOV2	1
9940	MYF5	1
9941	MYF6	1
9942	MYH1	4.924691e-01
9943	MYH10	1
9944	MYH11	4.791896e-01
9945	MYH13	1
9946	MYH14	1
9947	MYH15	4.724360e-02
9948	MYH2	1
9949	MYH3	1
9950	MYH4	4.615261e-03
9951	MYH6	1.831032e-01
9952	MYH7	1.180215e-01
9953	MYH7B	1.808242e-01
9954	MYH8	3.692435e-01
9955	MYH9	1
9956	MYL1	2.770462e-02
9957	MYL10	1
9958	MYL12A	1
9959	MYL12B	1
9960	MYL2	1
9961	MYL3	1
9962	MYL4	1
9963	MYL5	1
9964	MYL6	4.645245e-02
9965	MYL6B	1
9966	MYL7	1
9967	MYL9	1
9968	MYLIP	8.579041e-03
9969	MYLK	4.400834e-01
9970	MYLK2	1
9971	MYLK3	1
9972	MYLK4	1
9973	MYLPF	1
9974	MYNN	9.169320e-02
Done

Running MutSig 2:
Scatter job 110: processing genes 9884 - 9974
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MUC4
Processing conservation and coverage...
Processing mutations... 
Skipping 13 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.599773e+00	ci left: 1.623679e-04	ci right 1.166444e-03	k: 5	n:10000
Cons ci ratio: 1.238882e-01	ci left: 8.533549e-02	ci right 9.670407e-02	k: 909	n:10000
KS ci ratio: 1.752551e+00	ci left: 1.089969e-04	ci right 1.023839e-03	k: 4	n:10000
MUC4   10000 perm   2 sec   (6253 perm/sec)   p_kst 4.000000e-04   p_cons 9.090000e-02   p_joint 5.000000e-04

Joint ci ratio: 1.306340e+00	ci left: 1.727069e-04	ci right 7.880065e-04	k: 8	n:20000
Cons ci ratio: 8.741912e-02	ci left: 8.734272e-02	ci right 9.537654e-02	k: 1826	n:20000
KS ci ratio: 1.385617e+00	ci left: 1.407294e-04	ci right 7.210000e-04	k: 7	n:20000
MUC4   20000 perm   5 sec   (3781 perm/sec)   p_kst 3.500000e-04   p_cons 9.130000e-02   p_joint 4.000000e-04

Joint ci ratio: 1.481423e+00	ci left: 7.339990e-05	ci right 4.352646e-04	k: 6	n:30000
Cons ci ratio: 7.009740e-02	ci left: 9.108133e-02	ci right 9.773079e-02	k: 2831	n:30000
KS ci ratio: 1.181688e+00	ci left: 1.598575e-04	ci right 6.129261e-04	k: 10	n:30000
MUC4   30000 perm   7 sec   (4107 perm/sec)   p_kst 3.333333e-04   p_cons 9.436667e-02   p_joint 2.000000e-04

Joint ci ratio: 1.239442e+00	ci left: 1.028893e-04	ci right 4.270769e-04	k: 9	n:40000
Cons ci ratio: 5.750618e-02	ci left: 1.010742e-01	ci right 1.070834e-01	k: 4162	n:40000
KS ci ratio: 1.011937e+00	ci left: 1.913610e-04	ci right 5.871709e-04	k: 14	n:40000
MUC4   40000 perm   9 sec   (4267 perm/sec)   p_kst 3.500000e-04   p_cons 1.040500e-01   p_joint 2.250000e-04

Joint ci ratio: 1.306536e+00	ci left: 6.907909e-05	ci right 3.152393e-04	k: 8	n:50000
Cons ci ratio: 5.171153e-02	ci left: 1.004081e-01	ci right 1.057580e-01	k: 5153	n:50000
KS ci ratio: 9.505685e-01	ci left: 1.829184e-04	ci right 5.196081e-04	k: 16	n:50000
MUC4   50000 perm   11 sec   (4350 perm/sec)   p_kst 3.200000e-04   p_cons 1.030600e-01   p_joint 1.600000e-04

Joint ci ratio: 1.239499e+00	ci left: 6.859177e-05	ci right 2.847275e-04	k: 9	n:60000
Cons ci ratio: 4.712874e-02	ci left: 1.009416e-01	ci right 1.058302e-01	k: 6202	n:60000
KS ci ratio: 9.238066e-01	ci left: 1.650605e-04	ci right 4.536055e-04	k: 17	n:60000
MUC4   60000 perm   14 sec   (4385 perm/sec)   p_kst 2.833333e-04   p_cons 1.033667e-01   p_joint 1.500000e-04

Joint ci ratio: 1.012024e+00	ci left: 1.093460e-04	ci right 3.355433e-04	k: 14	n:70000
Cons ci ratio: 4.373338e-02	ci left: 1.007010e-01	ci right 1.052176e-01	k: 7206	n:70000
KS ci ratio: 8.552797e-01	ci left: 1.745302e-04	ci right 4.412282e-04	k: 20	n:70000
MUC4   70000 perm   16 sec   (4330 perm/sec)   p_kst 2.857143e-04   p_cons 1.029429e-01   p_joint 2.000000e-04

Joint ci ratio: 9.506327e-01	ci left: 1.143215e-04	ci right 3.247672e-04	k: 16	n:80000
Cons ci ratio: 4.079183e-02	ci left: 1.013726e-01	ci right 1.056062e-01	k: 8278	n:80000
KS ci ratio: 8.172539e-01	ci left: 1.723488e-04	ci right 4.163239e-04	k: 22	n:80000
MUC4   80000 perm   19 sec   (4319 perm/sec)   p_kst 2.750000e-04   p_cons 1.034750e-01   p_joint 2.000000e-04

Joint ci ratio: 1.047577e+00	ci left: 7.691275e-05	ci right 2.469917e-04	k: 13	n:90000
Cons ci ratio: 3.837139e-02	ci left: 1.019137e-01	ci right 1.059118e-01	k: 9351	n:90000
KS ci ratio: 7.278044e-01	ci left: 2.067407e-04	ci right 4.496110e-04	k: 28	n:90000
MUC4   90000 perm   21 sec   (4311 perm/sec)   p_kst 3.111111e-04   p_cons 1.039000e-01   p_joint 1.444444e-04

Joint ci ratio: 8.992197e-01	ci left: 1.066828e-04	ci right 2.844627e-04	k: 18	n:100000
Cons ci ratio: 3.839877e-02	ci left: 9.256486e-02	ci right 9.619871e-02	k: 9437	n:100000
KS ci ratio: 6.532125e-01	ci left: 2.437996e-04	ci right 4.867320e-04	k: 35	n:100000
MUC4   100000 perm   23 sec   (4282 perm/sec)   p_kst 3.500000e-04   p_cons 9.437000e-02   p_joint 1.800000e-04

Joint ci ratio: 3.096763e-01	ci left: 1.229638e-03	ci right 1.688203e-03	k: 159	n:110000
Cons ci ratio: 3.661337e-02	ci left: 9.264225e-02	ci right 9.610644e-02	k: 10380	n:110000
KS ci ratio: 6.047509e-01	ci left: 2.674884e-04	ci right 5.056130e-04	k: 41	n:110000
MUC4   110000 perm   26 sec   (4228 perm/sec)   p_kst 3.727273e-04   p_cons 9.436364e-02   p_joint 1.445455e-03

Joint ci ratio: 2.961068e-01	ci left: 1.242674e-03	ci right 1.681985e-03	k: 174	n:120000
Cons ci ratio: 3.494525e-02	ci left: 9.324743e-02	ci right 9.657218e-02	k: 11388	n:120000
KS ci ratio: 5.976848e-01	ci left: 2.522605e-04	ci right 4.730692e-04	k: 42	n:120000
MUC4   120000 perm   29 sec   (4194 perm/sec)   p_kst 3.500000e-04   p_cons 9.490000e-02   p_joint 1.450000e-03

Joint ci ratio: 8.173011e-01	ci left: 1.060590e-04	ci right 2.562063e-04	k: 22	n:130000
Cons ci ratio: 3.348307e-02	ci left: 9.377775e-02	ci right 9.697879e-02	k: 12398	n:130000
KS ci ratio: 5.842557e-01	ci left: 2.459371e-04	ci right 4.543425e-04	k: 44	n:130000
MUC4   130000 perm   31 sec   (4155 perm/sec)   p_kst 3.384615e-04   p_cons 9.536923e-02   p_joint 1.692308e-04

Joint ci ratio: 7.839272e-01	ci left: 1.098405e-04	ci right 2.550615e-04	k: 24	n:140000
Cons ci ratio: 3.220085e-02	ci left: 9.417802e-02	ci right 9.726732e-02	k: 13400	n:140000
KS ci ratio: 5.488078e-01	ci left: 2.650896e-04	ci right 4.708216e-04	k: 50	n:140000
MUC4   140000 perm   34 sec   (4114 perm/sec)   p_kst 3.571429e-04   p_cons 9.571429e-02   p_joint 1.714286e-04

Joint ci ratio: 7.687061e-01	ci left: 1.078607e-04	ci right 2.460231e-04	k: 25	n:150000
Cons ci ratio: 3.115245e-02	ci left: 9.399068e-02	ci right 9.697164e-02	k: 14321	n:150000
KS ci ratio: 5.284740e-01	ci left: 2.704543e-04	ci right 4.696961e-04	k: 54	n:150000
MUC4   150000 perm   37 sec   (4071 perm/sec)   p_kst 3.600000e-04   p_cons 9.547333e-02   p_joint 1.666667e-04

Joint ci ratio: 7.687104e-01	ci left: 1.011192e-04	ci right 2.306472e-04	k: 25	n:160000
Cons ci ratio: 3.018158e-02	ci left: 9.393375e-02	ci right 9.681843e-02	k: 15259	n:160000
KS ci ratio: 5.191226e-01	ci left: 2.643967e-04	ci right 4.544804e-04	k: 56	n:160000
MUC4   160000 perm   40 sec   (4032 perm/sec)   p_kst 3.500000e-04   p_cons 9.536875e-02   p_joint 1.562500e-04

Joint ci ratio: 7.278615e-01	ci left: 1.094486e-04	ci right 2.380371e-04	k: 28	n:170000
Cons ci ratio: 2.929917e-02	ci left: 9.386726e-02	ci right 9.666420e-02	k: 16194	n:170000
KS ci ratio: 4.861218e-01	ci left: 2.899399e-04	ci right 4.807195e-04	k: 64	n:170000
MUC4   170000 perm   43 sec   (3992 perm/sec)   p_kst 3.764706e-04   p_cons 9.525882e-02   p_joint 1.647059e-04

Joint ci ratio: 7.156292e-01	ci left: 1.079012e-04	ci right 2.313743e-04	k: 29	n:180000
Cons ci ratio: 2.851841e-02	ci left: 9.363815e-02	ci right 9.635268e-02	k: 17098	n:180000
KS ci ratio: 4.824288e-01	ci left: 2.787086e-04	ci right 4.602429e-04	k: 65	n:180000
MUC4   180000 perm   46 sec   (3947 perm/sec)   p_kst 3.611111e-04   p_cons 9.498889e-02   p_joint 1.611111e-04

Joint ci ratio: 6.823234e-01	ci left: 1.152026e-04	ci right 2.377520e-04	k: 32	n:190000
Cons ci ratio: 2.777730e-02	ci left: 9.355436e-02	ci right 9.619485e-02	k: 18025	n:190000
KS ci ratio: 4.684421e-01	ci left: 2.825692e-04	ci right 4.595774e-04	k: 69	n:190000
MUC4   190000 perm   49 sec   (3901 perm/sec)   p_kst 3.631579e-04   p_cons 9.486842e-02   p_joint 1.684211e-04

Joint ci ratio: 6.532729e-01	ci left: 1.218968e-04	ci right 2.433743e-04	k: 35	n:200000
Cons ci ratio: 2.705093e-02	ci left: 9.373324e-02	ci right 9.630851e-02	k: 19003	n:200000
KS ci ratio: 4.495683e-01	ci left: 2.949724e-04	ci right 4.700434e-04	k: 75	n:200000
MUC4   200000 perm   52 sec   (3856 perm/sec)   p_kst 3.750000e-04   p_cons 9.501500e-02   p_joint 1.750000e-04

Joint ci ratio: 6.532758e-01	ci left: 1.160921e-04	ci right 2.317854e-04	k: 35	n:210000
Cons ci ratio: 2.643723e-02	ci left: 9.351719e-02	ci right 9.602735e-02	k: 19901	n:210000
KS ci ratio: 4.409504e-01	ci left: 2.936096e-04	ci right 4.635383e-04	k: 78	n:210000
MUC4   210000 perm   55 sec   (3809 perm/sec)   p_kst 3.714286e-04   p_cons 9.476667e-02   p_joint 1.666667e-04

Joint ci ratio: 6.197487e-01	ci left: 1.260612e-04	ci right 2.423298e-04	k: 39	n:220000
Cons ci ratio: 2.585456e-02	ci left: 9.338014e-02	ci right 9.583055e-02	k: 20812	n:220000
KS ci ratio: 4.201841e-01	ci left: 3.126883e-04	ci right 4.827474e-04	k: 86	n:220000
MUC4   220000 perm   59 sec   (3758 perm/sec)   p_kst 3.909091e-04   p_cons 9.460000e-02   p_joint 1.772727e-04

Joint ci ratio: 6.048126e-01	ci left: 1.279260e-04	ci right 2.418233e-04	k: 41	n:230000
Cons ci ratio: 2.530749e-02	ci left: 9.326422e-02	ci right 9.565905e-02	k: 21725	n:230000
KS ci ratio: 4.108455e-01	ci left: 3.146663e-04	ci right 4.809579e-04	k: 90	n:230000
MUC4   230000 perm   62 sec   (3714 perm/sec)   p_kst 3.913043e-04   p_cons 9.445652e-02   p_joint 1.782609e-04

Joint ci ratio: 5.909068e-01	ci left: 1.296667e-04	ci right 2.413288e-04	k: 43	n:240000
Cons ci ratio: 2.479131e-02	ci left: 9.317505e-02	ci right 9.551809e-02	k: 22642	n:240000
KS ci ratio: 4.021031e-01	ci left: 3.165178e-04	ci right 4.792798e-04	k: 94	n:240000
MUC4   240000 perm   65 sec   (3671 perm/sec)   p_kst 3.916667e-04   p_cons 9.434167e-02   p_joint 1.791667e-04

Joint ci ratio: 7.407674e-01	ci left: 7.117385e-05	ci right 1.571305e-04	k: 27	n:250000
Cons ci ratio: 2.431346e-02	ci left: 9.303778e-02	ci right 9.533164e-02	k: 23545	n:250000
KS ci ratio: 3.919208e-01	ci left: 3.218605e-04	ci right 4.820950e-04	k: 99	n:250000
MUC4   250000 perm   69 sec   (3628 perm/sec)   p_kst 3.960000e-04   p_cons 9.418000e-02   p_joint 1.080000e-04

Joint ci ratio: 7.156481e-01	ci left: 7.470029e-05	ci right 1.601839e-04	k: 29	n:260000
Cons ci ratio: 2.383263e-02	ci left: 9.312188e-02	ci right 9.537179e-02	k: 24503	n:260000
KS ci ratio: 3.843100e-01	ci left: 3.233648e-04	ci right 4.804315e-04	k: 103	n:260000
MUC4   260000 perm   73 sec   (3583 perm/sec)   p_kst 3.961538e-04   p_cons 9.424231e-02   p_joint 1.115385e-04

Joint ci ratio: 6.929223e-01	ci left: 7.801239e-05	ci right 1.629665e-04	k: 31	n:270000
Cons ci ratio: 2.341938e-02	ci left: 9.290911e-02	ci right 9.511442e-02	k: 25382	n:270000
KS ci ratio: 3.771260e-01	ci left: 3.247854e-04	ci right 4.788637e-04	k: 107	n:270000
MUC4   270000 perm   77 sec   (3526 perm/sec)   p_kst 3.962963e-04   p_cons 9.400741e-02   p_joint 1.148148e-04

Joint ci ratio: 6.929238e-01	ci left: 7.522619e-05	ci right 1.571464e-04	k: 31	n:280000
Cons ci ratio: 2.299165e-02	ci left: 9.297123e-02	ci right 9.513718e-02	k: 26334	n:280000
KS ci ratio: 3.753941e-01	ci left: 3.164193e-04	ci right 4.656696e-04	k: 108	n:280000
MUC4   280000 perm   80 sec   (3485 perm/sec)   p_kst 3.857143e-04   p_cons 9.405000e-02   p_joint 1.107143e-04

Joint ci ratio: 5.285217e-01	ci left: 1.398874e-04	ci right 2.429527e-04	k: 54	n:290000
Cons ci ratio: 2.260940e-02	ci left: 9.285787e-02	ci right 9.498474e-02	k: 27236	n:290000
KS ci ratio: 3.719981e-01	ci left: 3.117570e-04	ci right 4.571537e-04	k: 110	n:290000
MUC4   290000 perm   84 sec   (3443 perm/sec)   p_kst 3.793103e-04   p_cons 9.391724e-02   p_joint 1.862069e-04

Joint ci ratio: 5.191665e-01	ci left: 1.410090e-04	ci right 2.423954e-04	k: 56	n:300000
Cons ci ratio: 2.223992e-02	ci left: 9.279546e-02	ci right 9.488572e-02	k: 28151	n:300000
KS ci ratio: 3.654712e-01	ci left: 3.134630e-04	ci right 4.564786e-04	k: 114	n:300000
MUC4   300000 perm   88 sec   (3405 perm/sec)   p_kst 3.800000e-04   p_cons 9.383667e-02   p_joint 1.866667e-04

Joint ci ratio: 5.146722e-01	ci left: 1.392650e-04	ci right 2.382197e-04	k: 57	n:310000
Cons ci ratio: 2.187015e-02	ci left: 9.287538e-02	ci right 9.493222e-02	k: 29109	n:310000
KS ci ratio: 3.592763e-01	ci left: 3.150799e-04	ci right 4.558265e-04	k: 118	n:310000
MUC4   310000 perm   92 sec   (3369 perm/sec)   p_kst 3.806452e-04   p_cons 9.390000e-02   p_joint 1.838710e-04

Joint ci ratio: 5.018559e-01	ci left: 1.430852e-04	ci right 2.413432e-04	k: 60	n:320000
Cons ci ratio: 2.152178e-02	ci left: 9.292258e-02	ci right 9.494728e-02	k: 30058	n:320000
KS ci ratio: 3.533860e-01	ci left: 3.166148e-04	ci right 4.551962e-04	k: 122	n:320000
MUC4   320000 perm   96 sec   (3327 perm/sec)   p_kst 3.812500e-04   p_cons 9.393125e-02   p_joint 1.875000e-04

Joint ci ratio: 4.977930e-01	ci left: 1.413973e-04	ci right 2.374394e-04	k: 61	n:330000
Cons ci ratio: 2.118388e-02	ci left: 9.301241e-02	ci right 9.500685e-02	k: 31022	n:330000
KS ci ratio: 3.505485e-01	ci left: 3.125451e-04	ci right 4.479969e-04	k: 124	n:330000
MUC4   330000 perm   101 sec   (3280 perm/sec)   p_kst 3.757576e-04   p_cons 9.400606e-02   p_joint 1.848485e-04

Joint ci ratio: 6.276654e-01	ci left: 7.909253e-05	ci right 1.534026e-04	k: 38	n:340000
Cons ci ratio: 2.085710e-02	ci left: 9.313231e-02	ci right 9.509815e-02	k: 31998	n:340000
KS ci ratio: 3.491561e-01	ci left: 3.060352e-04	ci right 4.380195e-04	k: 125	n:340000
MUC4   340000 perm   105 sec   (3248 perm/sec)   p_kst 3.676471e-04   p_cons 9.411176e-02   p_joint 1.117647e-04

Joint ci ratio: 6.197701e-01	ci left: 7.923777e-05	ci right 1.523234e-04	k: 39	n:350000
Cons ci ratio: 2.053811e-02	ci left: 9.330246e-02	ci right 9.524141e-02	k: 32994	n:350000
KS ci ratio: 3.464185e-01	ci left: 3.025063e-04	ci right 4.317163e-04	k: 127	n:350000
MUC4   350000 perm   109 sec   (3215 perm/sec)   p_kst 3.628571e-04   p_cons 9.426857e-02   p_joint 1.114286e-04

Joint ci ratio: 6.121654e-01	ci left: 7.938056e-05	ci right 1.512988e-04	k: 40	n:360000
Cons ci ratio: 2.025768e-02	ci left: 9.325874e-02	ci right 9.517002e-02	k: 33916	n:360000
KS ci ratio: 3.450744e-01	ci left: 2.966398e-04	ci right 4.227425e-04	k: 128	n:360000
MUC4   360000 perm   113 sec   (3182 perm/sec)   p_kst 3.555556e-04   p_cons 9.421111e-02   p_joint 1.111111e-04

Joint ci ratio: 5.977589e-01	ci left: 8.181174e-05	ci right 1.534342e-04	k: 42	n:370000
Cons ci ratio: 1.998241e-02	ci left: 9.326869e-02	ci right 9.515389e-02	k: 34857	n:370000
KS ci ratio: 3.398456e-01	ci left: 2.985037e-04	ci right 4.230540e-04	k: 132	n:370000
MUC4   370000 perm   117 sec   (3149 perm/sec)   p_kst 3.567568e-04   p_cons 9.420811e-02   p_joint 1.135135e-04

Joint ci ratio: 5.977598e-01	ci left: 7.965877e-05	ci right 1.493966e-04	k: 42	n:380000
Cons ci ratio: 1.969985e-02	ci left: 9.343547e-02	ci right 9.529704e-02	k: 35858	n:380000
KS ci ratio: 3.348474e-01	ci left: 3.002832e-04	ci right 4.233356e-04	k: 136	n:380000
MUC4   380000 perm   122 sec   (3114 perm/sec)   p_kst 3.578947e-04   p_cons 9.436316e-02   p_joint 1.105263e-04

Joint ci ratio: 5.977607e-01	ci left: 7.761621e-05	ci right 1.455660e-04	k: 42	n:390000
Cons ci ratio: 1.944672e-02	ci left: 9.343815e-02	ci right 9.527558e-02	k: 36798	n:390000
KS ci ratio: 3.312406e-01	ci left: 2.996327e-04	ci right 4.208140e-04	k: 139	n:390000
MUC4   390000 perm   126 sec   (3083 perm/sec)   p_kst 3.564103e-04   p_cons 9.435385e-02   p_joint 1.076923e-04

Joint ci ratio: 4.496116e-01	ci left: 1.474834e-04	ci right 2.350273e-04	k: 75	n:400000
Cons ci ratio: 1.918542e-02	ci left: 9.359766e-02	ci right 9.541322e-02	k: 37801	n:400000
KS ci ratio: 3.277479e-01	ci left: 2.990215e-04	ci right 4.184119e-04	k: 142	n:400000
MUC4   400000 perm   131 sec   (3053 perm/sec)   p_kst 3.550000e-04   p_cons 9.450250e-02   p_joint 1.875000e-04

Joint ci ratio: 4.438098e-01	ci left: 1.482154e-04	ci right 2.347184e-04	k: 77	n:410000
Cons ci ratio: 1.895029e-02	ci left: 9.360625e-02	ci right 9.539949e-02	k: 38745	n:410000
KS ci ratio: 3.243633e-01	ci left: 2.984465e-04	ci right 4.161207e-04	k: 145	n:410000
MUC4   410000 perm   136 sec   (3023 perm/sec)   p_kst 3.536585e-04   p_cons 9.450000e-02   p_joint 1.878049e-04

Joint ci ratio: 4.355130e-01	ci left: 1.510386e-04	ci right 2.370586e-04	k: 80	n:420000
Cons ci ratio: 1.871475e-02	ci left: 9.369518e-02	ci right 9.546756e-02	k: 39723	n:420000
KS ci ratio: 3.189473e-01	ci left: 3.022845e-04	ci right 4.190755e-04	k: 150	n:420000
MUC4   420000 perm   140 sec   (2994 perm/sec)   p_kst 3.571429e-04   p_cons 9.457857e-02   p_joint 1.904762e-04

Joint ci ratio: 4.276648e-01	ci left: 1.537448e-04	ci right 2.392758e-04	k: 83	n:430000
Cons ci ratio: 1.849757e-02	ci left: 9.368977e-02	ci right 9.544127e-02	k: 40662	n:430000
KS ci ratio: 3.137939e-01	ci left: 3.059595e-04	ci right 4.218775e-04	k: 155	n:430000
MUC4   430000 perm   145 sec   (2965 perm/sec)   p_kst 3.604651e-04   p_cons 9.456279e-02   p_joint 1.930233e-04

Joint ci ratio: 4.251421e-01	ci left: 1.522793e-04	ci right 2.363531e-04	k: 84	n:440000
Cons ci ratio: 1.828340e-02	ci left: 9.372547e-02	ci right 9.545714e-02	k: 41619	n:440000
KS ci ratio: 3.098465e-01	ci left: 3.073855e-04	ci right 4.220893e-04	k: 159	n:440000
MUC4   440000 perm   150 sec   (2935 perm/sec)   p_kst 3.613636e-04   p_cons 9.458864e-02   p_joint 1.909091e-04

Joint ci ratio: 4.251431e-01	ci left: 1.488953e-04	ci right 2.311009e-04	k: 84	n:450000
Cons ci ratio: 1.808285e-02	ci left: 9.369994e-02	ci right 9.541195e-02	k: 42549	n:450000
KS ci ratio: 3.088837e-01	ci left: 3.026044e-04	ci right 4.151040e-04	k: 160	n:450000
MUC4   450000 perm   155 sec   (2904 perm/sec)   p_kst 3.555556e-04   p_cons 9.455333e-02   p_joint 1.866667e-04

Joint ci ratio: 4.226645e-01	ci left: 1.476004e-04	ci right 2.284816e-04	k: 85	n:460000
Cons ci ratio: 1.789284e-02	ci left: 9.363665e-02	ci right 9.532934e-02	k: 43461	n:460000
KS ci ratio: 3.079297e-01	ci left: 2.980316e-04	ci right 4.084218e-04	k: 161	n:460000
MUC4   460000 perm   160 sec   (2874 perm/sec)   p_kst 3.500000e-04   p_cons 9.448043e-02   p_joint 1.847826e-04

Joint ci ratio: 4.496180e-01	ci left: 1.255174e-04	ci right 2.000239e-04	k: 75	n:470000
Cons ci ratio: 1.770892e-02	ci left: 9.357402e-02	ci right 9.524801e-02	k: 44372	n:470000
KS ci ratio: 3.032845e-01	ci left: 3.015132e-04	ci right 4.111833e-04	k: 166	n:470000
MUC4   470000 perm   165 sec   (2848 perm/sec)   p_kst 3.531915e-04   p_cons 9.440851e-02   p_joint 1.595745e-04

Joint ci ratio: 4.466892e-01	ci left: 1.247506e-04	ci right 1.981738e-04	k: 76	n:480000
Cons ci ratio: 1.752927e-02	ci left: 9.352653e-02	ci right 9.518253e-02	k: 45289	n:480000
KS ci ratio: 3.005967e-01	ci left: 3.010083e-04	ci right 4.093391e-04	k: 169	n:480000
MUC4   480000 perm   170 sec   (2824 perm/sec)   p_kst 3.520833e-04   p_cons 9.435208e-02   p_joint 1.583333e-04

Joint ci ratio: 4.042779e-01	ci left: 1.531924e-04	ci right 2.325079e-04	k: 93	n:490000
Cons ci ratio: 1.735187e-02	ci left: 9.351157e-02	ci right 9.515038e-02	k: 46221	n:490000
KS ci ratio: 2.979792e-01	ci left: 3.005280e-04	ci right 4.075660e-04	k: 172	n:490000
MUC4   490000 perm   175 sec   (2797 perm/sec)   p_kst 3.510204e-04   p_cons 9.432857e-02   p_joint 1.897959e-04

Joint ci ratio: 3.519824e-01	ci left: 2.044541e-04	ci right 2.935059e-04	k: 123	n:500000
Cons ci ratio: 1.717874e-02	ci left: 9.350724e-02	ci right 9.512946e-02	k: 47158	n:500000
KS ci ratio: 2.945928e-01	ci left: 3.019230e-04	ci right 4.080075e-04	k: 176	n:500000
MUC4   500000 perm   180 sec   (2772 perm/sec)   p_kst 3.520000e-04   p_cons 9.431600e-02   p_joint 2.460000e-04

Joint ci ratio: 3.491779e-01	ci left: 2.040214e-04	ci right 2.920164e-04	k: 125	n:510000
Cons ci ratio: 1.700620e-02	ci left: 9.354809e-02	ci right 9.515456e-02	k: 48118	n:510000
KS ci ratio: 2.921277e-01	ci left: 3.014524e-04	ci right 4.063214e-04	k: 179	n:510000
MUC4   510000 perm   186 sec   (2746 perm/sec)   p_kst 3.509804e-04   p_cons 9.434902e-02   p_joint 2.450980e-04

Joint ci ratio: 3.959421e-01	ci left: 1.512726e-04	ci right 2.275564e-04	k: 97	n:520000
Cons ci ratio: 1.684142e-02	ci left: 9.356062e-02	ci right 9.515159e-02	k: 49064	n:520000
KS ci ratio: 2.889348e-01	ci left: 3.027871e-04	ci right 4.067588e-04	k: 183	n:520000
MUC4   520000 perm   191 sec   (2721 perm/sec)   p_kst 3.519231e-04   p_cons 9.435385e-02   p_joint 1.865385e-04

Joint ci ratio: 3.959428e-01	ci left: 1.484184e-04	ci right 2.232630e-04	k: 97	n:530000
Cons ci ratio: 1.667673e-02	ci left: 9.361975e-02	ci right 9.519601e-02	k: 50035	n:530000
KS ci ratio: 2.889358e-01	ci left: 2.970740e-04	ci right 3.990843e-04	k: 183	n:530000
MUC4   530000 perm   197 sec   (2696 perm/sec)   p_kst 3.452830e-04   p_cons 9.440566e-02   p_joint 1.830189e-04

Joint ci ratio: 3.939383e-01	ci left: 1.473378e-04	ci right 2.211634e-04	k: 98	n:540000
Cons ci ratio: 1.652733e-02	ci left: 9.356791e-02	ci right 9.512904e-02	k: 50947	n:540000
KS ci ratio: 2.866089e-01	ci left: 2.967272e-04	ci right 3.976493e-04	k: 186	n:540000
MUC4   540000 perm   202 sec   (2670 perm/sec)   p_kst 3.444444e-04   p_cons 9.434630e-02   p_joint 1.814815e-04

Joint ci ratio: 3.919640e-01	ci left: 1.462975e-04	ci right 2.191393e-04	k: 99	n:550000
Cons ci ratio: 1.638642e-02	ci left: 9.347091e-02	ci right 9.501700e-02	k: 51833	n:550000
KS ci ratio: 2.835917e-01	ci left: 2.980850e-04	ci right 3.982106e-04	k: 190	n:550000
MUC4   550000 perm   208 sec   (2647 perm/sec)   p_kst 3.454545e-04   p_cons 9.424182e-02   p_joint 1.800000e-04

Joint ci ratio: 3.862132e-01	ci left: 1.485181e-04	ci right 2.211047e-04	k: 102	n:560000
Cons ci ratio: 1.624259e-02	ci left: 9.344504e-02	ci right 9.497701e-02	k: 52757	n:560000
KS ci ratio: 2.806679e-01	ci left: 2.993996e-04	ci right 3.987465e-04	k: 194	n:560000
MUC4   560000 perm   214 sec   (2622 perm/sec)   p_kst 3.464286e-04   p_cons 9.420893e-02   p_joint 1.821429e-04

Joint ci ratio: 3.807083e-01	ci left: 1.506684e-04	ci right 2.229937e-04	k: 105	n:570000
Cons ci ratio: 1.609222e-02	ci left: 9.352852e-02	ci right 9.504753e-02	k: 53743	n:570000
KS ci ratio: 2.771370e-01	ci left: 3.023056e-04	ci right 4.011347e-04	k: 199	n:570000
MUC4   570000 perm   219 sec   (2598 perm/sec)   p_kst 3.491228e-04   p_cons 9.428596e-02   p_joint 1.842105e-04

Joint ci ratio: 3.789254e-01	ci left: 1.496301e-04	ci right 2.210371e-04	k: 106	n:580000
Cons ci ratio: 1.595802e-02	ci left: 9.348034e-02	ci right 9.498579e-02	k: 54654	n:580000
KS ci ratio: 2.764473e-01	ci left: 2.986978e-04	ci right 3.960622e-04	k: 200	n:580000
MUC4   580000 perm   225 sec   (2578 perm/sec)   p_kst 3.448276e-04   p_cons 9.423103e-02   p_joint 1.827586e-04

Joint ci ratio: 3.789260e-01	ci left: 1.470940e-04	ci right 2.172907e-04	k: 106	n:590000
Cons ci ratio: 1.581912e-02	ci left: 9.351997e-02	ci right 9.501283e-02	k: 55616	n:590000
KS ci ratio: 2.744072e-01	ci left: 2.983687e-04	ci right 3.947844e-04	k: 203	n:590000
MUC4   590000 perm   231 sec   (2556 perm/sec)   p_kst 3.440678e-04   p_cons 9.426441e-02   p_joint 1.796610e-04

Joint ci ratio: 3.771679e-01	ci left: 1.461507e-04	ci right 2.154936e-04	k: 107	n:600000
Cons ci ratio: 1.568730e-02	ci left: 9.352014e-02	ci right 9.500045e-02	k: 56555	n:600000
KS ci ratio: 2.730722e-01	ci left: 2.965005e-04	ci right 3.917662e-04	k: 205	n:600000
MUC4   600000 perm   237 sec   (2534 perm/sec)   p_kst 3.416667e-04   p_cons 9.425833e-02   p_joint 1.783333e-04

Joint ci ratio: 3.737233e-01	ci left: 1.467241e-04	ci right 2.155476e-04	k: 109	n:610000
Cons ci ratio: 1.555365e-02	ci left: 9.357589e-02	ci right 9.504436e-02	k: 57528	n:610000
KS ci ratio: 2.717565e-01	ci left: 2.946945e-04	ci right 3.888460e-04	k: 207	n:610000
MUC4   610000 perm   243 sec   (2512 perm/sec)   p_kst 3.393443e-04   p_cons 9.430820e-02   p_joint 1.786885e-04

Joint ci ratio: 3.703714e-01	ci left: 1.472818e-04	ci right 2.155971e-04	k: 111	n:620000
Cons ci ratio: 1.542117e-02	ci left: 9.365401e-02	ci right 9.511107e-02	k: 58516	n:620000
KS ci ratio: 2.698178e-01	ci left: 2.944516e-04	ci right 3.877407e-04	k: 210	n:620000
MUC4   620000 perm   249 sec   (2490 perm/sec)   p_kst 3.387097e-04   p_cons 9.438065e-02   p_joint 1.790323e-04

Joint ci ratio: 3.655082e-01	ci left: 1.492656e-04	ci right 2.173751e-04	k: 114	n:630000
Cons ci ratio: 1.529826e-02	ci left: 9.366010e-02	ci right 9.510554e-02	k: 59460	n:630000
KS ci ratio: 2.672959e-01	ci left: 2.956996e-04	ci right 3.883617e-04	k: 214	n:630000
MUC4   630000 perm   255 sec   (2469 perm/sec)   p_kst 3.396825e-04   p_cons 9.438095e-02   p_joint 1.809524e-04

Joint ci ratio: 3.623707e-01	ci left: 1.497726e-04	ci right 2.173882e-04	k: 116	n:640000
Cons ci ratio: 1.517894e-02	ci left: 9.365825e-02	ci right 9.509229e-02	k: 60399	n:640000
KS ci ratio: 2.654505e-01	ci left: 2.954538e-04	ci right 3.872934e-04	k: 217	n:640000
MUC4   640000 perm   261 sec   (2448 perm/sec)   p_kst 3.390625e-04   p_cons 9.437344e-02   p_joint 1.812500e-04

Joint ci ratio: 3.623712e-01	ci left: 1.474684e-04	ci right 2.140438e-04	k: 116	n:650000
Cons ci ratio: 1.506834e-02	ci left: 9.358905e-02	ci right 9.501149e-02	k: 61294	n:650000
KS ci ratio: 2.636427e-01	ci left: 2.952176e-04	ci right 3.862558e-04	k: 220	n:650000
MUC4   650000 perm   268 sec   (2429 perm/sec)   p_kst 3.384615e-04   p_cons 9.429846e-02   p_joint 1.784615e-04

Joint ci ratio: 3.593131e-01	ci left: 1.479896e-04	ci right 2.141046e-04	k: 118	n:660000
Cons ci ratio: 1.495269e-02	ci left: 9.360654e-02	ci right 9.501824e-02	k: 62245	n:660000
KS ci ratio: 2.618714e-01	ci left: 2.949907e-04	ci right 3.852476e-04	k: 223	n:660000
MUC4   660000 perm   274 sec   (2409 perm/sec)   p_kst 3.378788e-04   p_cons 9.431061e-02   p_joint 1.787879e-04

Joint ci ratio: 3.548675e-01	ci left: 1.498568e-04	ci right 2.157866e-04	k: 121	n:670000
Cons ci ratio: 1.484096e-02	ci left: 9.360867e-02	ci right 9.500976e-02	k: 63186	n:670000
KS ci ratio: 2.601353e-01	ci left: 2.947726e-04	ci right 3.842675e-04	k: 226	n:670000
MUC4   670000 perm   280 sec   (2389 perm/sec)   p_kst 3.373134e-04   p_cons 9.430746e-02   p_joint 1.805970e-04

Joint ci ratio: 3.548680e-01	ci left: 1.476530e-04	ci right 2.126133e-04	k: 121	n:680000
Cons ci ratio: 1.473398e-02	ci left: 9.358440e-02	ci right 9.497494e-02	k: 64109	n:680000
KS ci ratio: 2.595646e-01	ci left: 2.918124e-04	ci right 3.801828e-04	k: 227	n:680000
MUC4   680000 perm   287 sec   (2367 perm/sec)   p_kst 3.338235e-04   p_cons 9.427794e-02   p_joint 1.779412e-04

Joint ci ratio: 3.519945e-01	ci left: 1.481543e-04	ci right 2.126868e-04	k: 123	n:690000
Cons ci ratio: 1.462568e-02	ci left: 9.360275e-02	ci right 9.498326e-02	k: 65061	n:690000
KS ci ratio: 2.578737e-01	ci left: 2.916491e-04	ci right 3.793020e-04	k: 230	n:690000
MUC4   690000 perm   294 sec   (2349 perm/sec)   p_kst 3.333333e-04   p_cons 9.429130e-02   p_joint 1.782609e-04

Joint ci ratio: 3.505839e-01	ci left: 1.473404e-04	ci right 2.112026e-04	k: 124	n:700000
Cons ci ratio: 1.452471e-02	ci left: 9.356224e-02	ci right 9.493255e-02	k: 65972	n:700000
KS ci ratio: 2.567648e-01	ci left: 2.901556e-04	ci right 3.769245e-04	k: 232	n:700000
MUC4   700000 perm   301 sec   (2329 perm/sec)   p_kst 3.314286e-04   p_cons 9.424571e-02   p_joint 1.771429e-04

Joint ci ratio: 3.505843e-01	ci left: 1.452651e-04	ci right 2.082279e-04	k: 124	n:710000
Cons ci ratio: 1.442688e-02	ci left: 9.351027e-02	ci right 9.487051e-02	k: 66874	n:710000
KS ci ratio: 2.567654e-01	ci left: 2.860688e-04	ci right 3.716158e-04	k: 232	n:710000
MUC4   710000 perm   307 sec   (2310 perm/sec)   p_kst 3.267606e-04   p_cons 9.418873e-02   p_joint 1.746479e-04

Joint ci ratio: 3.491906e-01	ci left: 1.445144e-04	ci right 2.068464e-04	k: 125	n:720000
Cons ci ratio: 1.432797e-02	ci left: 9.349576e-02	ci right 9.484639e-02	k: 67802	n:720000
KS ci ratio: 2.551283e-01	ci left: 2.859950e-04	ci right 3.708879e-04	k: 235	n:720000
MUC4   720000 perm   314 sec   (2291 perm/sec)   p_kst 3.263889e-04   p_cons 9.416944e-02   p_joint 1.736111e-04

Joint ci ratio: 3.464517e-01	ci left: 1.450351e-04	ci right 2.069910e-04	k: 127	n:730000
Cons ci ratio: 1.422523e-02	ci left: 9.355133e-02	ci right 9.489299e-02	k: 68781	n:730000
KS ci ratio: 2.535220e-01	ci left: 2.859249e-04	ci right 3.701782e-04	k: 238	n:730000
MUC4   730000 perm   321 sec   (2272 perm/sec)   p_kst 3.260274e-04   p_cons 9.422055e-02   p_joint 1.739726e-04

Joint ci ratio: 3.437763e-01	ci left: 1.455437e-04	ci right 2.071298e-04	k: 129	n:740000
Cons ci ratio: 1.412356e-02	ci left: 9.361889e-02	ci right 9.495185e-02	k: 69770	n:740000
KS ci ratio: 2.519458e-01	ci left: 2.858584e-04	ci right 3.694861e-04	k: 241	n:740000
MUC4   740000 perm   328 sec   (2255 perm/sec)   p_kst 3.256757e-04   p_cons 9.428378e-02   p_joint 1.743243e-04

Joint ci ratio: 3.424618e-01	ci left: 1.448215e-04	ci right 2.058159e-04	k: 130	n:750000
Cons ci ratio: 1.402951e-02	ci left: 9.361823e-02	ci right 9.494224e-02	k: 70709	n:750000
KS ci ratio: 2.498889e-01	ci left: 2.870449e-04	ci right 3.702276e-04	k: 245	n:750000
MUC4   750000 perm   335 sec   (2238 perm/sec)   p_kst 3.266667e-04   p_cons 9.427867e-02   p_joint 1.733333e-04

Joint ci ratio: 3.386063e-01	ci left: 1.465258e-04	ci right 2.073914e-04	k: 133	n:760000
Cons ci ratio: 1.393892e-02	ci left: 9.359794e-02	ci right 9.491305e-02	k: 71633	n:760000
KS ci ratio: 2.473872e-01	ci left: 2.894371e-04	ci right 3.723442e-04	k: 250	n:760000
MUC4   760000 perm   342 sec   (2222 perm/sec)   p_kst 3.289474e-04   p_cons 9.425395e-02   p_joint 1.750000e-04

Joint ci ratio: 3.373501e-01	ci left: 1.458114e-04	ci right 2.061066e-04	k: 134	n:770000
Cons ci ratio: 1.385302e-02	ci left: 9.354196e-02	ci right 9.484811e-02	k: 72529	n:770000
KS ci ratio: 2.464076e-01	ci left: 2.881149e-04	ci right 3.702663e-04	k: 252	n:770000
MUC4   770000 perm   349 sec   (2205 perm/sec)   p_kst 3.272727e-04   p_cons 9.419351e-02   p_joint 1.740260e-04

Joint ci ratio: 3.348786e-01	ci left: 1.462897e-04	ci right 2.062439e-04	k: 136	n:780000
Cons ci ratio: 1.375876e-02	ci left: 9.361013e-02	ci right 9.490827e-02	k: 73521	n:780000
KS ci ratio: 2.449596e-01	ci left: 2.880305e-04	ci right 3.696018e-04	k: 255	n:780000
MUC4   780000 perm   356 sec   (2189 perm/sec)   p_kst 3.269231e-04   p_cons 9.425769e-02   p_joint 1.743590e-04

Joint ci ratio: 3.336632e-01	ci left: 1.455975e-04	ci right 2.050049e-04	k: 137	n:790000
Cons ci ratio: 1.366842e-02	ci left: 9.365137e-02	ci right 9.494148e-02	k: 74493	n:790000
KS ci ratio: 2.435369e-01	ci left: 2.879496e-04	ci right 3.689527e-04	k: 258	n:790000
MUC4   790000 perm   364 sec   (2172 perm/sec)   p_kst 3.265823e-04   p_cons 9.429494e-02   p_joint 1.734177e-04

Joint ci ratio: 3.324610e-01	ci left: 1.449230e-04	ci right 2.037965e-04	k: 138	n:800000
Cons ci ratio: 1.358282e-02	ci left: 9.365421e-02	ci right 9.493623e-02	k: 75435	n:800000
KS ci ratio: 2.407636e-01	ci left: 2.913952e-04	ci right 3.722949e-04	k: 264	n:800000
MUC4   800000 perm   371 sec   (2157 perm/sec)   p_kst 3.300000e-04   p_cons 9.429375e-02   p_joint 1.725000e-04

Joint ci ratio: 3.312716e-01	ci left: 1.442656e-04	ci right 2.026175e-04	k: 139	n:810000
Cons ci ratio: 1.349803e-02	ci left: 9.366686e-02	ci right 9.494098e-02	k: 76385	n:810000
KS ci ratio: 2.398604e-01	ci left: 2.901182e-04	ci right 3.703163e-04	k: 266	n:810000
MUC4   810000 perm   378 sec   (2141 perm/sec)   p_kst 3.283951e-04   p_cons 9.430247e-02   p_joint 1.716049e-04

Joint ci ratio: 3.300950e-01	ci left: 1.436245e-04	ci right 2.014670e-04	k: 140	n:820000
Cons ci ratio: 1.341509e-02	ci left: 9.367558e-02	ci right 9.494192e-02	k: 77332	n:820000
KS ci ratio: 2.376453e-01	ci left: 2.923130e-04	ci right 3.722618e-04	k: 271	n:820000
MUC4   820000 perm   386 sec   (2125 perm/sec)   p_kst 3.304878e-04   p_cons 9.430732e-02   p_joint 1.707317e-04

Joint ci ratio: 3.266381e-01	ci left: 1.452106e-04	ci right 2.029510e-04	k: 143	n:830000
Cons ci ratio: 1.333263e-02	ci left: 9.369732e-02	ci right 9.495612e-02	k: 78290	n:830000
KS ci ratio: 2.354905e-01	ci left: 2.944583e-04	ci right 3.741571e-04	k: 276	n:830000
MUC4   830000 perm   394 sec   (2107 perm/sec)   p_kst 3.325301e-04   p_cons 9.432530e-02   p_joint 1.722892e-04

Joint ci ratio: 3.221934e-01	ci left: 1.478561e-04	ci right 2.056832e-04	k: 147	n:840000
Cons ci ratio: 1.325047e-02	ci left: 9.373400e-02	ci right 9.498547e-02	k: 79261	n:840000
KS ci ratio: 2.333933e-01	ci left: 2.965557e-04	ci right 3.760042e-04	k: 281	n:840000
MUC4   840000 perm   402 sec   (2090 perm/sec)   p_kst 3.345238e-04   p_cons 9.435833e-02   p_joint 1.750000e-04

Joint ci ratio: 3.189766e-01	ci left: 1.493621e-04	ci right 2.070758e-04	k: 150	n:850000
Cons ci ratio: 1.316818e-02	ci left: 9.379095e-02	ci right 9.503534e-02	k: 80250	n:850000
KS ci ratio: 2.325702e-01	ci left: 2.952824e-04	ci right 3.740707e-04	k: 283	n:850000
MUC4   850000 perm   410 sec   (2076 perm/sec)   p_kst 3.329412e-04   p_cons 9.441176e-02   p_joint 1.764706e-04

Joint ci ratio: 3.168848e-01	ci left: 1.497654e-04	ci right 2.071785e-04	k: 152	n:860000
Cons ci ratio: 1.309070e-02	ci left: 9.380370e-02	ci right 9.504089e-02	k: 81202	n:860000
KS ci ratio: 2.305494e-01	ci left: 2.973256e-04	ci right 3.758716e-04	k: 288	n:860000
MUC4   860000 perm   418 sec   (2059 perm/sec)   p_kst 3.348837e-04   p_cons 9.442093e-02   p_joint 1.767442e-04

Joint ci ratio: 4.276862e-01	ci left: 7.598809e-05	ci right 1.182642e-04	k: 83	n:870000
Cons ci ratio: 1.301255e-02	ci left: 9.384255e-02	ci right 9.507280e-02	k: 82177	n:870000
KS ci ratio: 2.293620e-01	ci left: 2.971577e-04	ci right 3.751978e-04	k: 291	n:870000
MUC4   870000 perm   426 sec   (2045 perm/sec)   p_kst 3.344828e-04   p_cons 9.445632e-02   p_joint 9.540230e-05

Joint ci ratio: 4.276864e-01	ci left: 7.512458e-05	ci right 1.169203e-04	k: 83	n:880000
Cons ci ratio: 1.293596e-02	ci left: 9.387826e-02	ci right 9.510168e-02	k: 83150	n:880000
KS ci ratio: 2.278069e-01	ci left: 2.980661e-04	ci right 3.757395e-04	k: 295	n:880000
MUC4   880000 perm   433 sec   (2030 perm/sec)   p_kst 3.352273e-04   p_cons 9.448864e-02   p_joint 9.431818e-05

Joint ci ratio: 4.251632e-01	ci left: 7.528347e-05	ci right 1.168501e-04	k: 84	n:890000
Cons ci ratio: 1.286206e-02	ci left: 9.389527e-02	ci right 9.511187e-02	k: 84107	n:890000
KS ci ratio: 2.274234e-01	ci left: 2.957765e-04	ci right 3.727053e-04	k: 296	n:890000
MUC4   890000 perm   441 sec   (2016 perm/sec)   p_kst 3.325843e-04   p_cons 9.450225e-02   p_joint 9.438202e-05

Joint ci ratio: 4.154984e-01	ci left: 7.842135e-05	ci right 1.204636e-04	k: 88	n:900000
Cons ci ratio: 1.279016e-02	ci left: 9.390194e-02	ci right 9.511178e-02	k: 85055	n:900000
KS ci ratio: 2.259071e-01	ci left: 2.966822e-04	ci right 3.732605e-04	k: 300	n:900000
MUC4   900000 perm   449 sec   (2003 perm/sec)   p_kst 3.333333e-04   p_cons 9.450556e-02   p_joint 9.777778e-05

Joint ci ratio: 4.131836e-01	ci left: 7.854391e-05	ci right 1.203527e-04	k: 89	n:910000
Cons ci ratio: 1.271913e-02	ci left: 9.391287e-02	ci right 9.511608e-02	k: 86007	n:910000
KS ci ratio: 2.255331e-01	ci left: 2.944587e-04	ci right 3.703197e-04	k: 301	n:910000
MUC4   910000 perm   458 sec   (1989 perm/sec)   p_kst 3.307692e-04   p_cons 9.451319e-02   p_joint 9.780220e-05

Joint ci ratio: 4.086676e-01	ci left: 7.963934e-05	ci right 1.214419e-04	k: 91	n:920000
Cons ci ratio: 1.265505e-02	ci left: 9.384555e-02	ci right 9.504179e-02	k: 86887	n:920000
KS ci ratio: 2.240541e-01	ci left: 2.953611e-04	ci right 3.708867e-04	k: 305	n:920000
MUC4   920000 perm   466 sec   (1975 perm/sec)   p_kst 3.315217e-04   p_cons 9.444239e-02   p_joint 9.891304e-05

Joint ci ratio: 4.042965e-01	ci left: 8.071364e-05	ci right 1.225054e-04	k: 93	n:930000
Cons ci ratio: 1.258504e-02	ci left: 9.387297e-02	ci right 9.506289e-02	k: 87854	n:930000
KS ci ratio: 2.222455e-01	ci left: 2.972611e-04	ci right 3.725750e-04	k: 310	n:930000
MUC4   930000 perm   474 sec   (1961 perm/sec)   p_kst 3.333333e-04   p_cons 9.446667e-02   p_joint 1.000000e-04

Joint ci ratio: 4.000627e-01	ci left: 8.176742e-05	ci right 1.235439e-04	k: 95	n:940000
Cons ci ratio: 1.251852e-02	ci left: 9.386800e-02	ci right 9.505153e-02	k: 88791	n:940000
KS ci ratio: 2.211813e-01	ci left: 2.971130e-04	ci right 3.719799e-04	k: 313	n:940000
MUC4   940000 perm   483 sec   (1948 perm/sec)   p_kst 3.329787e-04   p_cons 9.445851e-02   p_joint 1.010638e-04

Joint ci ratio: 2.980048e-01	ci left: 1.550074e-04	ci right 2.102211e-04	k: 172	n:950000
Cons ci ratio: 1.245013e-02	ci left: 9.390303e-02	ci right 9.508049e-02	k: 89766	n:950000
KS ci ratio: 2.208302e-01	ci left: 2.949798e-04	ci right 3.691751e-04	k: 314	n:950000
MUC4   950000 perm   491 sec   (1935 perm/sec)   p_kst 3.305263e-04   p_cons 9.449053e-02   p_joint 1.810526e-04

Joint ci ratio: 2.971473e-01	ci left: 1.543566e-04	ci right 2.091506e-04	k: 173	n:960000
Cons ci ratio: 1.238300e-02	ci left: 9.393528e-02	ci right 9.510675e-02	k: 90739	n:960000
KS ci ratio: 2.201327e-01	ci left: 2.938754e-04	ci right 3.675278e-04	k: 316	n:960000
MUC4   960000 perm   500 sec   (1920 perm/sec)   p_kst 3.291667e-04   p_cons 9.451979e-02   p_joint 1.802083e-04

Joint ci ratio: 2.946182e-01	ci left: 1.556286e-04	ci right 2.103160e-04	k: 176	n:970000
Cons ci ratio: 1.231761e-02	ci left: 9.395763e-02	ci right 9.512314e-02	k: 91703	n:970000
KS ci ratio: 2.184167e-01	ci left: 2.957173e-04	ci right 3.691761e-04	k: 321	n:970000
MUC4   970000 perm   509 sec   (1908 perm/sec)   p_kst 3.309278e-04   p_cons 9.453918e-02   p_joint 1.814433e-04

Joint ci ratio: 2.921526e-01	ci left: 1.568765e-04	ci right 2.114558e-04	k: 179	n:980000
Cons ci ratio: 1.225317e-02	ci left: 9.398055e-02	ci right 9.514021e-02	k: 92668	n:980000
KS ci ratio: 2.174063e-01	ci left: 2.955939e-04	ci right 3.686370e-04	k: 324	n:980000
MUC4   980000 perm   517 sec   (1896 perm/sec)   p_kst 3.306122e-04   p_cons 9.455918e-02   p_joint 1.826531e-04

Joint ci ratio: 2.921528e-01	ci left: 1.552919e-04	ci right 2.093199e-04	k: 179	n:990000
Cons ci ratio: 1.219297e-02	ci left: 9.395770e-02	ci right 9.511134e-02	k: 93588	n:990000
KS ci ratio: 2.167406e-01	ci left: 2.945185e-04	ci right 3.670433e-04	k: 326	n:990000
MUC4   990000 perm   525 sec   (1884 perm/sec)   p_kst 3.292929e-04   p_cons 9.453333e-02   p_joint 1.808081e-04

Joint ci ratio: 2.913448e-01	ci left: 1.546658e-04	ci right 2.082997e-04	k: 180	n:1000000
Cons ci ratio: 1.213202e-02	ci left: 9.395826e-02	ci right 9.510609e-02	k: 94531	n:1000000
KS ci ratio: 2.157532e-01	ci left: 2.944108e-04	ci right 3.665351e-04	k: 329	n:1000000
MUC4   1000000 perm   534 sec   (1872 perm/sec)   p_kst 3.290000e-04   p_cons 9.453100e-02   p_joint 1.800000e-04

Joint ci ratio: 2.897483e-01	ci left: 1.549703e-04	ci right 2.083614e-04	k: 182	n:1010000
Cons ci ratio: 1.207414e-02	ci left: 9.392820e-02	ci right 9.507016e-02	k: 95443	n:1010000
KS ci ratio: 2.141369e-01	ci left: 2.961799e-04	ci right 3.681226e-04	k: 334	n:1010000
MUC4   1010000 perm   543 sec   (1861 perm/sec)   p_kst 3.306931e-04   p_cons 9.449802e-02   p_joint 1.801980e-04

Joint ci ratio: 2.874020e-01	ci left: 1.561794e-04	ci right 2.094721e-04	k: 185	n:1020000
Cons ci ratio: 1.201570e-02	ci left: 9.391831e-02	ci right 9.505458e-02	k: 96375	n:1020000
KS ci ratio: 2.128697e-01	ci left: 2.969881e-04	ci right 3.686445e-04	k: 338	n:1020000
MUC4   1020000 perm   552 sec   (1849 perm/sec)   p_kst 3.313725e-04   p_cons 9.448529e-02   p_joint 1.813725e-04

Joint ci ratio: 2.866326e-01	ci left: 1.555640e-04	ci right 2.084790e-04	k: 186	n:1030000
Cons ci ratio: 1.195525e-02	ci left: 9.394929e-02	ci right 9.508018e-02	k: 97349	n:1030000
KS ci ratio: 2.122447e-01	ci left: 2.959431e-04	ci right 3.671104e-04	k: 340	n:1030000
MUC4   1030000 perm   561 sec   (1837 perm/sec)   p_kst 3.300971e-04   p_cons 9.451359e-02   p_joint 1.805825e-04

Joint ci ratio: 2.858694e-01	ci left: 1.549607e-04	ci right 2.075048e-04	k: 187	n:1040000
Cons ci ratio: 1.189744e-02	ci left: 9.395475e-02	ci right 9.508020e-02	k: 98297	n:1040000
KS ci ratio: 2.110106e-01	ci left: 2.967398e-04	ci right 3.676302e-04	k: 344	n:1040000
MUC4   1040000 perm   570 sec   (1826 perm/sec)   p_kst 3.307692e-04   p_cons 9.451635e-02   p_joint 1.798077e-04

Joint ci ratio: 2.843608e-01	ci left: 1.552535e-04	ci right 2.075691e-04	k: 189	n:1050000
Cons ci ratio: 1.184185e-02	ci left: 9.394018e-02	ci right 9.506016e-02	k: 99224	n:1050000
KS ci ratio: 2.100991e-01	ci left: 2.966202e-04	ci right 3.671365e-04	k: 347	n:1050000
MUC4   1050000 perm   579 sec   (1815 perm/sec)   p_kst 3.304762e-04   p_cons 9.449905e-02   p_joint 1.800000e-04

Joint ci ratio: 2.828759e-01	ci left: 1.555415e-04	ci right 2.076315e-04	k: 191	n:1060000
Cons ci ratio: 1.178690e-02	ci left: 9.392777e-02	ci right 9.504237e-02	k: 100153	n:1060000
KS ci ratio: 2.089019e-01	ci left: 2.973975e-04	ci right 3.676442e-04	k: 351	n:1060000
MUC4   1060000 perm   588 sec   (1803 perm/sec)   p_kst 3.311321e-04   p_cons 9.448396e-02   p_joint 1.801887e-04

Joint ci ratio: 2.792626e-01	ci left: 1.584314e-04	ci right 2.106924e-04	k: 196	n:1070000
Cons ci ratio: 1.173040e-02	ci left: 9.394916e-02	ci right 9.505864e-02	k: 101118	n:1070000
KS ci ratio: 2.071437e-01	ci left: 2.999335e-04	ci right 3.701074e-04	k: 357	n:1070000
MUC4   1070000 perm   597 sec   (1793 perm/sec)   p_kst 3.336449e-04   p_cons 9.450280e-02   p_joint 1.831776e-04

Joint ci ratio: 2.778557e-01	ci left: 1.586870e-04	ci right 2.107224e-04	k: 198	n:1080000
Cons ci ratio: 1.167572e-02	ci left: 9.395540e-02	ci right 9.505974e-02	k: 102067	n:1080000
KS ci ratio: 2.059960e-01	ci left: 3.006685e-04	ci right 3.705755e-04	k: 361	n:1080000
MUC4   1080000 perm   606 sec   (1781 perm/sec)   p_kst 3.342593e-04   p_cons 9.450648e-02   p_joint 1.833333e-04

Joint ci ratio: 2.757846e-01	ci left: 1.597924e-04	ci right 2.117320e-04	k: 201	n:1090000
Cons ci ratio: 1.162304e-02	ci left: 9.394323e-02	ci right 9.504241e-02	k: 102996	n:1090000
KS ci ratio: 2.051477e-01	ci left: 3.005207e-04	ci right 3.700695e-04	k: 364	n:1090000
MUC4   1090000 perm   616 sec   (1770 perm/sec)   p_kst 3.339450e-04   p_cons 9.449174e-02   p_joint 1.844037e-04

Joint ci ratio: 2.737590e-01	ci left: 1.608791e-04	ci right 2.127219e-04	k: 204	n:1100000
Cons ci ratio: 1.157106e-02	ci left: 9.393129e-02	ci right 9.502539e-02	k: 103925	n:1100000
KS ci ratio: 2.037567e-01	ci left: 3.021015e-04	ci right 3.714830e-04	k: 369	n:1100000
MUC4   1100000 perm   625 sec   (1759 perm/sec)   p_kst 3.354545e-04   p_cons 9.447727e-02   p_joint 1.854545e-04

Joint ci ratio: 2.724333e-01	ci left: 1.611082e-04	ci right 2.127303e-04	k: 206	n:1110000
Cons ci ratio: 1.151917e-02	ci left: 9.392857e-02	ci right 9.501769e-02	k: 104864	n:1110000
KS ci ratio: 2.029357e-01	ci left: 3.019449e-04	ci right 3.709765e-04	k: 372	n:1110000
MUC4   1110000 perm   635 sec   (1748 perm/sec)   p_kst 3.351351e-04   p_cons 9.447207e-02   p_joint 1.855856e-04

Joint ci ratio: 2.711266e-01	ci left: 1.613338e-04	ci right 2.127380e-04	k: 208	n:1120000
Cons ci ratio: 1.146858e-02	ci left: 9.391700e-02	ci right 9.500117e-02	k: 105793	n:1120000
KS ci ratio: 2.026644e-01	ci left: 3.000965e-04	ci right 3.686024e-04	k: 373	n:1120000
MUC4   1120000 perm   645 sec   (1738 perm/sec)   p_kst 3.330357e-04   p_cons 9.445804e-02   p_joint 1.857143e-04

Joint ci ratio: 2.692013e-01	ci left: 1.623811e-04	ci right 2.136896e-04	k: 211	n:1130000
Cons ci ratio: 1.141687e-02	ci left: 9.393212e-02	ci right 9.501155e-02	k: 106752	n:1130000
KS ci ratio: 2.013230e-01	ci left: 3.016418e-04	ci right 3.699886e-04	k: 378	n:1130000
MUC4   1130000 perm   654 sec   (1728 perm/sec)   p_kst 3.345133e-04   p_cons 9.447080e-02   p_joint 1.867257e-04

Joint ci ratio: 2.679404e-01	ci left: 1.625930e-04	ci right 2.136874e-04	k: 213	n:1140000
Cons ci ratio: 1.136940e-02	ci left: 9.389362e-02	ci right 9.496809e-02	k: 107650	n:1140000
KS ci ratio: 2.002689e-01	ci left: 3.023282e-04	ci right 3.704281e-04	k: 382	n:1140000
MUC4   1140000 perm   664 sec   (1717 perm/sec)   p_kst 3.350877e-04   p_cons 9.442982e-02   p_joint 1.868421e-04

Joint ci ratio: 2.660817e-01	ci left: 1.636133e-04	ci right 2.146121e-04	k: 216	n:1150000
Cons ci ratio: 1.132155e-02	ci left: 9.387054e-02	ci right 9.494020e-02	k: 108565	n:1150000
KS ci ratio: 1.992312e-01	ci left: 3.030035e-04	ci right 3.708589e-04	k: 386	n:1150000
MUC4   1150000 perm   674 sec   (1707 perm/sec)   p_kst 3.356522e-04   p_cons 9.440435e-02   p_joint 1.878261e-04

Joint ci ratio: 2.654708e-01	ci left: 1.630074e-04	ci right 2.136814e-04	k: 217	n:1160000
Cons ci ratio: 1.127430e-02	ci left: 9.384787e-02	ci right 9.491278e-02	k: 109480	n:1160000
KS ci ratio: 1.987185e-01	ci left: 3.020297e-04	ci right 3.694718e-04	k: 388	n:1160000
MUC4   1160000 perm   683 sec   (1697 perm/sec)   p_kst 3.344828e-04   p_cons 9.437931e-02   p_joint 1.870690e-04

Joint ci ratio: 2.642614e-01	ci left: 1.632101e-04	ci right 2.136777e-04	k: 219	n:1170000
Cons ci ratio: 1.122488e-02	ci left: 9.386737e-02	ci right 9.492780e-02	k: 110444	n:1170000
KS ci ratio: 1.982097e-01	ci left: 3.010727e-04	ci right 3.681082e-04	k: 390	n:1170000
MUC4   1170000 perm   694 sec   (1687 perm/sec)   p_kst 3.333333e-04   p_cons 9.439658e-02   p_joint 1.871795e-04

Joint ci ratio: 2.618910e-01	ci left: 1.649933e-04	ci right 2.154797e-04	k: 223	n:1180000
Cons ci ratio: 1.117688e-02	ci left: 9.387472e-02	ci right 9.493067e-02	k: 111394	n:1180000
KS ci ratio: 1.964586e-01	ci left: 3.041604e-04	ci right 3.712135e-04	k: 397	n:1180000
MUC4   1180000 perm   704 sec   (1677 perm/sec)   p_kst 3.364407e-04   p_cons 9.440169e-02   p_joint 1.889831e-04

Joint ci ratio: 2.613085e-01	ci left: 1.643920e-04	ci right 2.145643e-04	k: 224	n:1190000
Cons ci ratio: 1.113135e-02	ci left: 9.385345e-02	ci right 9.490483e-02	k: 112310	n:1190000
KS ci ratio: 1.959670e-01	ci left: 3.032025e-04	ci right 3.698572e-04	k: 399	n:1190000
MUC4   1190000 perm   714 sec   (1667 perm/sec)   p_kst 3.352941e-04   p_cons 9.437815e-02   p_joint 1.882353e-04

Joint ci ratio: 2.613087e-01	ci left: 1.630221e-04	ci right 2.127763e-04	k: 224	n:1200000
Cons ci ratio: 1.108562e-02	ci left: 9.384418e-02	ci right 9.489111e-02	k: 113240	n:1200000
KS ci ratio: 1.959672e-01	ci left: 3.006758e-04	ci right 3.667751e-04	k: 399	n:1200000
MUC4   1200000 perm   724 sec   (1658 perm/sec)   p_kst 3.325000e-04   p_cons 9.436667e-02   p_joint 1.866667e-04

Joint ci ratio: 2.601550e-01	ci left: 1.632197e-04	ci right 2.127785e-04	k: 226	n:1210000
Cons ci ratio: 1.103693e-02	ci left: 9.388948e-02	ci right 9.493229e-02	k: 114236	n:1210000
KS ci ratio: 1.954793e-01	ci left: 2.997627e-04	ci right 3.654777e-04	k: 401	n:1210000
MUC4   1210000 perm   734 sec   (1648 perm/sec)   p_kst 3.314050e-04   p_cons 9.440992e-02   p_joint 1.867769e-04

Joint ci ratio: 2.595840e-01	ci left: 1.626481e-04	ci right 2.119073e-04	k: 227	n:1220000
Cons ci ratio: 1.099250e-02	ci left: 9.387764e-02	ci right 9.491609e-02	k: 115163	n:1220000
KS ci ratio: 1.949949e-01	ci left: 2.988649e-04	ci right 3.642014e-04	k: 403	n:1220000
MUC4   1220000 perm   744 sec   (1639 perm/sec)   p_kst 3.303279e-04   p_cons 9.439590e-02   p_joint 1.860656e-04

Joint ci ratio: 2.590167e-01	ci left: 1.620859e-04	ci right 2.110502e-04	k: 228	n:1230000
Cons ci ratio: 1.094543e-02	ci left: 9.391546e-02	ci right 9.494986e-02	k: 116151	n:1230000
KS ci ratio: 1.942750e-01	ci left: 2.987552e-04	ci right 3.637981e-04	k: 406	n:1230000
MUC4   1230000 perm   755 sec   (1629 perm/sec)   p_kst 3.300813e-04   p_cons 9.443171e-02   p_joint 1.853659e-04

Joint ci ratio: 2.573364e-01	ci left: 1.630416e-04	ci right 2.119238e-04	k: 231	n:1240000
Cons ci ratio: 1.090303e-02	ci left: 9.388914e-02	ci right 9.491921e-02	k: 117060	n:1240000
KS ci ratio: 1.933272e-01	ci left: 2.994152e-04	ci right 3.642464e-04	k: 410	n:1240000
MUC4   1240000 perm   765 sec   (1620 perm/sec)   p_kst 3.306452e-04   p_cons 9.440323e-02   p_joint 1.862903e-04

Joint ci ratio: 2.567837e-01	ci left: 1.624857e-04	ci right 2.110798e-04	k: 232	n:1250000
Cons ci ratio: 1.086090e-02	ci left: 9.386643e-02	ci right 9.489225e-02	k: 117973	n:1250000
KS ci ratio: 1.923932e-01	ci left: 3.000654e-04	ci right 3.646867e-04	k: 414	n:1250000
MUC4   1250000 perm   776 sec   (1611 perm/sec)   p_kst 3.312000e-04   p_cons 9.437840e-02   p_joint 1.856000e-04

Joint ci ratio: 2.562345e-01	ci left: 1.619388e-04	ci right 2.102492e-04	k: 233	n:1260000
Cons ci ratio: 1.081701e-02	ci left: 9.387972e-02	ci right 9.490151e-02	k: 118931	n:1260000
KS ci ratio: 1.917016e-01	ci left: 2.999504e-04	ci right 3.642877e-04	k: 417	n:1260000
MUC4   1260000 perm   787 sec   (1601 perm/sec)   p_kst 3.309524e-04   p_cons 9.438968e-02   p_joint 1.849206e-04

Joint ci ratio: 2.562347e-01	ci left: 1.606636e-04	ci right 2.085937e-04	k: 233	n:1270000
Cons ci ratio: 1.077537e-02	ci left: 9.386531e-02	ci right 9.488299e-02	k: 119854	n:1270000
KS ci ratio: 1.912447e-01	ci left: 2.990879e-04	ci right 3.630695e-04	k: 419	n:1270000
MUC4   1270000 perm   797 sec   (1592 perm/sec)   p_kst 3.299213e-04   p_cons 9.437323e-02   p_joint 1.834646e-04

Joint ci ratio: 2.551466e-01	ci left: 1.608708e-04	ci right 2.086265e-04	k: 235	n:1280000
Cons ci ratio: 1.073171e-02	ci left: 9.389089e-02	ci right 9.490470e-02	k: 120828	n:1280000
KS ci ratio: 1.907911e-01	ci left: 2.982390e-04	ci right 3.618702e-04	k: 421	n:1280000
MUC4   1280000 perm   808 sec   (1583 perm/sec)   p_kst 3.289062e-04   p_cons 9.439688e-02   p_joint 1.835938e-04

Joint ci ratio: 2.551468e-01	ci left: 1.596237e-04	ci right 2.070092e-04	k: 235	n:1290000
Cons ci ratio: 1.068965e-02	ci left: 9.389906e-02	ci right 9.490896e-02	k: 121780	n:1290000
KS ci ratio: 1.905656e-01	ci left: 2.966653e-04	ci right 3.598772e-04	k: 422	n:1290000
MUC4   1290000 perm   819 sec   (1574 perm/sec)   p_kst 3.271318e-04   p_cons 9.440310e-02   p_joint 1.821705e-04

Joint ci ratio: 2.546081e-01	ci left: 1.591160e-04	ci right 2.062351e-04	k: 236	n:1300000
Cons ci ratio: 1.064755e-02	ci left: 9.391556e-02	ci right 9.492163e-02	k: 122743	n:1300000
KS ci ratio: 1.898934e-01	ci left: 2.965810e-04	ci right 3.595263e-04	k: 425	n:1300000
MUC4   1300000 perm   831 sec   (1565 perm/sec)   p_kst 3.269231e-04   p_cons 9.441769e-02   p_joint 1.815385e-04

Joint ci ratio: 2.535405e-01	ci left: 1.593308e-04	ci right 2.062845e-04	k: 238	n:1310000
Cons ci ratio: 1.060367e-02	ci left: 9.396837e-02	ci right 9.497083e-02	k: 123754	n:1310000
KS ci ratio: 1.890081e-01	ci left: 2.972257e-04	ci right 3.599799e-04	k: 429	n:1310000
MUC4   1310000 perm   842 sec   (1556 perm/sec)   p_kst 3.274809e-04   p_cons 9.446870e-02   p_joint 1.816794e-04

Joint ci ratio: 2.514449e-01	ci left: 1.609624e-04	ci right 2.079434e-04	k: 242	n:1320000
Cons ci ratio: 1.056393e-02	ci left: 9.396219e-02	ci right 9.496081e-02	k: 124688	n:1320000
KS ci ratio: 1.879186e-01	ci left: 2.985832e-04	ci right 3.612192e-04	k: 434	n:1320000
MUC4   1320000 perm   853 sec   (1548 perm/sec)   p_kst 3.287879e-04   p_cons 9.446061e-02   p_joint 1.833333e-04

Joint ci ratio: 2.494004e-01	ci left: 1.625709e-04	ci right 2.095758e-04	k: 246	n:1330000
Cons ci ratio: 1.052347e-02	ci left: 9.397486e-02	ci right 9.496976e-02	k: 125647	n:1330000
KS ci ratio: 1.868477e-01	ci left: 2.999212e-04	ci right 3.624388e-04	k: 439	n:1330000
MUC4   1330000 perm   864 sec   (1539 perm/sec)   p_kst 3.300752e-04   p_cons 9.447143e-02   p_joint 1.849624e-04

Joint ci ratio: 2.483967e-01	ci left: 1.627572e-04	ci right 2.095972e-04	k: 248	n:1340000
Cons ci ratio: 1.048458e-02	ci left: 9.396948e-02	ci right 9.496063e-02	k: 126582	n:1340000
KS ci ratio: 1.862140e-01	ci left: 2.998173e-04	ci right 3.620772e-04	k: 442	n:1340000
MUC4   1340000 perm   876 sec   (1530 perm/sec)   p_kst 3.298507e-04   p_cons 9.446418e-02   p_joint 1.850746e-04

Joint ci ratio: 2.459394e-01	ci left: 1.650259e-04	ci right 2.119772e-04	k: 253	n:1350000
Cons ci ratio: 1.044597e-02	ci left: 9.396641e-02	ci right 9.495385e-02	k: 127520	n:1350000
KS ci ratio: 1.851718e-01	ci left: 3.011280e-04	ci right 3.632708e-04	k: 447	n:1350000
MUC4   1350000 perm   887 sec   (1522 perm/sec)   p_kst 3.311111e-04   p_cons 9.445926e-02   p_joint 1.874074e-04

Joint ci ratio: 2.454568e-01	ci left: 1.645025e-04	ci right 2.111991e-04	k: 254	n:1360000
Cons ci ratio: 1.040641e-02	ci left: 9.398612e-02	ci right 9.497001e-02	k: 128489	n:1360000
KS ci ratio: 1.847599e-01	ci left: 3.003163e-04	ci right 3.621383e-04	k: 449	n:1360000
MUC4   1360000 perm   898 sec   (1514 perm/sec)   p_kst 3.301471e-04   p_cons 9.447721e-02   p_joint 1.867647e-04

Joint ci ratio: 2.449770e-01	ci left: 1.639868e-04	ci right 2.104322e-04	k: 255	n:1370000
Cons ci ratio: 1.037118e-02	ci left: 9.394148e-02	ci right 9.492155e-02	k: 129370	n:1370000
KS ci ratio: 1.845551e-01	ci left: 2.988204e-04	ci right 3.602586e-04	k: 450	n:1370000
MUC4   1370000 perm   910 sec   (1506 perm/sec)   p_kst 3.284672e-04   p_cons 9.443066e-02   p_joint 1.861314e-04

Joint ci ratio: 2.440256e-01	ci left: 1.641590e-04	ci right 2.104452e-04	k: 257	n:1380000
Cons ci ratio: 1.033574e-02	ci left: 9.390688e-02	ci right 9.488323e-02	k: 130264	n:1380000
KS ci ratio: 1.839444e-01	ci left: 2.987287e-04	ci right 3.599221e-04	k: 453	n:1380000
MUC4   1380000 perm   921 sec   (1498 perm/sec)   p_kst 3.282609e-04   p_cons 9.439420e-02   p_joint 1.862319e-04

Joint ci ratio: 2.435542e-01	ci left: 1.636535e-04	ci right 2.096945e-04	k: 258	n:1390000
Cons ci ratio: 1.029888e-02	ci left: 9.390222e-02	ci right 9.487501e-02	k: 131199	n:1390000
KS ci ratio: 1.831393e-01	ci left: 2.993250e-04	ci right 3.603425e-04	k: 457	n:1390000
MUC4   1390000 perm   933 sec   (1490 perm/sec)   p_kst 3.287770e-04   p_cons 9.438777e-02   p_joint 1.856115e-04

Joint ci ratio: 2.430854e-01	ci left: 1.631552e-04	ci right 2.089544e-04	k: 259	n:1400000
Cons ci ratio: 1.026194e-02	ci left: 9.390547e-02	ci right 9.487478e-02	k: 132145	n:1400000
KS ci ratio: 1.825425e-01	ci left: 2.992318e-04	ci right 3.600095e-04	k: 460	n:1400000
MUC4   1400000 perm   945 sec   (1482 perm/sec)   p_kst 3.285714e-04   p_cons 9.438929e-02   p_joint 1.850000e-04

Joint ci ratio: 2.421558e-01	ci left: 1.633303e-04	ci right 2.089770e-04	k: 261	n:1410000
Cons ci ratio: 1.022527e-02	ci left: 9.391080e-02	ci right 9.487669e-02	k: 133094	n:1410000
KS ci ratio: 1.815604e-01	ci left: 3.004941e-04	ci right 3.611637e-04	k: 465	n:1410000
MUC4   1410000 perm   956 sec   (1475 perm/sec)   p_kst 3.297872e-04   p_cons 9.439291e-02   p_joint 1.851064e-04

Joint ci ratio: 2.416951e-01	ci left: 1.628417e-04	ci right 2.082522e-04	k: 262	n:1420000
Cons ci ratio: 1.019008e-02	ci left: 9.389779e-02	ci right 9.486020e-02	k: 134017	n:1420000
KS ci ratio: 1.813661e-01	ci left: 2.990501e-04	ci right 3.593565e-04	k: 466	n:1420000
MUC4   1420000 perm   968 sec   (1467 perm/sec)   p_kst 3.281690e-04   p_cons 9.437817e-02   p_joint 1.845070e-04

Joint ci ratio: 2.403282e-01	ci left: 1.636741e-04	ci right 2.090202e-04	k: 265	n:1430000
Cons ci ratio: 1.015600e-02	ci left: 9.387241e-02	ci right 9.483133e-02	k: 134922	n:1430000
KS ci ratio: 1.804028e-01	ci left: 3.002971e-04	ci right 3.604982e-04	k: 471	n:1430000
MUC4   1430000 perm   980 sec   (1460 perm/sec)   p_kst 3.293706e-04   p_cons 9.435105e-02   p_joint 1.853147e-04

Joint ci ratio: 2.389842e-01	ci left: 1.644957e-04	ci right 2.097768e-04	k: 268	n:1440000
Cons ci ratio: 1.012197e-02	ci left: 9.385224e-02	ci right 9.480772e-02	k: 135834	n:1440000
KS ci ratio: 1.788928e-01	ci left: 3.035175e-04	ci right 3.637998e-04	k: 479	n:1440000
MUC4   1440000 perm   992 sec   (1452 perm/sec)   p_kst 3.326389e-04   p_cons 9.432917e-02   p_joint 1.861111e-04

Joint ci ratio: 2.381007e-01	ci left: 1.646582e-04	ci right 2.097917e-04	k: 270	n:1450000
Cons ci ratio: 1.008735e-02	ci left: 9.384818e-02	ci right 9.480033e-02	k: 136769	n:1450000
KS ci ratio: 1.781520e-01	ci left: 3.040596e-04	ci right 3.641726e-04	k: 483	n:1450000
MUC4   1450000 perm   1004 sec   (1445 perm/sec)   p_kst 3.331034e-04   p_cons 9.432345e-02   p_joint 1.862069e-04

Joint ci ratio: 2.359339e-01	ci left: 1.667517e-04	ci right 2.119824e-04	k: 275	n:1460000
Cons ci ratio: 1.005327e-02	ci left: 9.384077e-02	ci right 9.478961e-02	k: 137699	n:1460000
KS ci ratio: 1.770578e-01	ci left: 3.059039e-04	ci right 3.659703e-04	k: 489	n:1460000
MUC4   1460000 perm   1015 sec   (1438 perm/sec)   p_kst 3.349315e-04   p_cons 9.431438e-02   p_joint 1.883562e-04

Joint ci ratio: 2.346619e-01	ci left: 1.675379e-04	ci right 2.127012e-04	k: 278	n:1470000
Cons ci ratio: 1.001879e-02	ci left: 9.384636e-02	ci right 9.479198e-02	k: 138648	n:1470000
KS ci ratio: 1.761612e-01	ci left: 3.070740e-04	ci right 3.670322e-04	k: 494	n:1470000
MUC4   1470000 perm   1027 sec   (1431 perm/sec)   p_kst 3.360544e-04   p_cons 9.431837e-02   p_joint 1.891156e-04

Joint ci ratio: 2.342426e-01	ci left: 1.670418e-04	ci right 2.119793e-04	k: 279	n:1480000
Cons ci ratio: 9.980234e-03	ci left: 9.392738e-02	ci right 9.487016e-02	k: 139709	n:1480000
KS ci ratio: 1.756298e-01	ci left: 3.069369e-04	ci right 3.666685e-04	k: 497	n:1480000
MUC4   1480000 perm   1040 sec   (1424 perm/sec)   p_kst 3.358108e-04   p_cons 9.439797e-02   p_joint 1.885135e-04

Joint ci ratio: 2.325870e-01	ci left: 1.684483e-04	ci right 2.133979e-04	k: 283	n:1490000
Cons ci ratio: 9.944657e-03	ci left: 9.396379e-02	ci right 9.490355e-02	k: 140705	n:1490000
KS ci ratio: 1.745811e-01	ci left: 3.087274e-04	ci right 3.684107e-04	k: 503	n:1490000
MUC4   1490000 perm   1052 sec   (1417 perm/sec)   p_kst 3.375839e-04   p_cons 9.443289e-02   p_joint 1.899329e-04

Joint ci ratio: 2.317723e-01	ci left: 1.685811e-04	ci right 2.133860e-04	k: 285	n:1500000
Cons ci ratio: 9.913166e-03	ci left: 9.393587e-02	ci right 9.487236e-02	k: 141605	n:1500000
KS ci ratio: 1.740638e-01	ci left: 3.085819e-04	ci right 3.680418e-04	k: 506	n:1500000
MUC4   1500000 perm   1064 sec   (1410 perm/sec)   p_kst 3.373333e-04   p_cons 9.440333e-02   p_joint 1.900000e-04

Joint ci ratio: 2.309661e-01	ci left: 1.687124e-04	ci right 2.133740e-04	k: 287	n:1510000
Cons ci ratio: 9.881704e-03	ci left: 9.391295e-02	ci right 9.484622e-02	k: 142512	n:1510000
KS ci ratio: 1.733812e-01	ci left: 3.090722e-04	ci right 3.683685e-04	k: 510	n:1510000
MUC4   1510000 perm   1076 sec   (1403 perm/sec)   p_kst 3.377483e-04   p_cons 9.437881e-02   p_joint 1.900662e-04

Joint ci ratio: 2.293785e-01	ci left: 1.700824e-04	ci right 2.147532e-04	k: 291	n:1520000
Cons ci ratio: 9.848531e-03	ci left: 9.392513e-02	ci right 9.485537e-02	k: 143472	n:1520000
KS ci ratio: 1.723720e-01	ci left: 3.108154e-04	ci right 3.700630e-04	k: 516	n:1520000
MUC4   1520000 perm   1089 sec   (1396 perm/sec)   p_kst 3.394737e-04   p_cons 9.438947e-02   p_joint 1.914474e-04

Joint ci ratio: 2.285970e-01	ci left: 1.702029e-04	ci right 2.147317e-04	k: 293	n:1530000
Cons ci ratio: 9.816064e-03	ci left: 9.393063e-02	ci right 9.485784e-02	k: 144422	n:1530000
KS ci ratio: 1.717090e-01	ci left: 3.112857e-04	ci right 3.703711e-04	k: 520	n:1530000
MUC4   1530000 perm   1101 sec   (1389 perm/sec)   p_kst 3.398693e-04   p_cons 9.439346e-02   p_joint 1.915033e-04

Joint ci ratio: 2.278234e-01	ci left: 1.703222e-04	ci right 2.147101e-04	k: 295	n:1540000
Cons ci ratio: 9.784028e-03	ci left: 9.393412e-02	ci right 9.485832e-02	k: 145369	n:1540000
KS ci ratio: 1.708909e-01	ci left: 3.123720e-04	ci right 3.713519e-04	k: 525	n:1540000
MUC4   1540000 perm   1114 sec   (1383 perm/sec)   p_kst 3.409091e-04   p_cons 9.439545e-02   p_joint 1.915584e-04

Joint ci ratio: 2.274396e-01	ci left: 1.698317e-04	ci right 2.140068e-04	k: 296	n:1550000
Cons ci ratio: 9.751163e-03	ci left: 9.395752e-02	ci right 9.487883e-02	k: 146347	n:1550000
KS ci ratio: 1.707288e-01	ci left: 3.109742e-04	ci right 3.696289e-04	k: 526	n:1550000
MUC4   1550000 perm   1126 sec   (1376 perm/sec)   p_kst 3.393548e-04   p_cons 9.441742e-02   p_joint 1.909677e-04

Joint ci ratio: 2.251762e-01	ci left: 1.723712e-04	ci right 2.166987e-04	k: 302	n:1560000
Cons ci ratio: 9.720194e-03	ci left: 9.395313e-02	ci right 9.487145e-02	k: 147282	n:1560000
KS ci ratio: 1.691313e-01	ci left: 3.151185e-04	ci right 3.739420e-04	k: 536	n:1560000
MUC4   1560000 perm   1139 sec   (1370 perm/sec)   p_kst 3.435897e-04   p_cons 9.441154e-02   p_joint 1.935897e-04

Joint ci ratio: 2.240696e-01	ci left: 1.730766e-04	ci right 2.173366e-04	k: 305	n:1570000
Cons ci ratio: 9.690131e-03	ci left: 9.393799e-02	ci right 9.485331e-02	k: 148200	n:1570000
KS ci ratio: 1.685049e-01	ci left: 3.155515e-04	ci right 3.742155e-04	k: 540	n:1570000
MUC4   1570000 perm   1151 sec   (1364 perm/sec)   p_kst 3.439490e-04   p_cons 9.439490e-02   p_joint 1.942675e-04

Joint ci ratio: 2.233409e-01	ci left: 1.731761e-04	ci right 2.172977e-04	k: 307	n:1580000
Cons ci ratio: 9.660203e-03	ci left: 9.392558e-02	ci right 9.483794e-02	k: 149122	n:1580000
KS ci ratio: 1.680396e-01	ci left: 3.153731e-04	ci right 3.738257e-04	k: 543	n:1580000
MUC4   1580000 perm   1164 sec   (1358 perm/sec)   p_kst 3.436709e-04   p_cons 9.438101e-02   p_joint 1.943038e-04

Joint ci ratio: 2.233410e-01	ci left: 1.720869e-04	ci right 2.159311e-04	k: 307	n:1590000
Cons ci ratio: 9.628991e-03	ci left: 9.394094e-02	ci right 9.485048e-02	k: 150088	n:1590000
KS ci ratio: 1.674252e-01	ci left: 3.157998e-04	ci right 3.740958e-04	k: 547	n:1590000
MUC4   1590000 perm   1177 sec   (1351 perm/sec)   p_kst 3.440252e-04   p_cons 9.439497e-02   p_joint 1.930818e-04

Joint ci ratio: 2.222611e-01	ci left: 1.727817e-04	ci right 2.165610e-04	k: 310	n:1600000
Cons ci ratio: 9.598326e-03	ci left: 9.395174e-02	ci right 9.485848e-02	k: 151047	n:1600000
KS ci ratio: 1.669688e-01	ci left: 3.156225e-04	ci right 3.737111e-04	k: 550	n:1600000
MUC4   1600000 perm   1190 sec   (1344 perm/sec)   p_kst 3.437500e-04   p_cons 9.440437e-02   p_joint 1.937500e-04

Joint ci ratio: 2.211968e-01	ci left: 1.734684e-04	ci right 2.171826e-04	k: 313	n:1610000
Cons ci ratio: 9.566735e-03	ci left: 9.398411e-02	ci right 9.488816e-02	k: 152041	n:1610000
KS ci ratio: 1.665161e-01	ci left: 3.154478e-04	ci right 3.733309e-04	k: 553	n:1610000
MUC4   1610000 perm   1204 sec   (1337 perm/sec)   p_kst 3.434783e-04   p_cons 9.443540e-02   p_joint 1.944099e-04

Joint ci ratio: 2.208454e-01	ci left: 1.729808e-04	ci right 2.164933e-04	k: 314	n:1620000
Cons ci ratio: 9.536762e-03	ci left: 9.399268e-02	ci right 9.489396e-02	k: 152997	n:1620000
KS ci ratio: 1.660671e-01	ci left: 3.152753e-04	ci right 3.729553e-04	k: 556	n:1620000
MUC4   1620000 perm   1217 sec   (1331 perm/sec)   p_kst 3.432099e-04   p_cons 9.444259e-02   p_joint 1.938272e-04

Joint ci ratio: 2.201477e-01	ci left: 1.730788e-04	ci right 2.164598e-04	k: 316	n:1630000
Cons ci ratio: 9.507307e-03	ci left: 9.399686e-02	ci right 9.489538e-02	k: 153946	n:1630000
KS ci ratio: 1.654740e-01	ci left: 3.156933e-04	ci right 3.732229e-04	k: 560	n:1630000
MUC4   1630000 perm   1230 sec   (1325 perm/sec)   p_kst 3.435583e-04   p_cons 9.444540e-02   p_joint 1.938650e-04

Joint ci ratio: 2.194565e-01	ci left: 1.731758e-04	ci right 2.164265e-04	k: 318	n:1640000
Cons ci ratio: 9.477482e-03	ci left: 9.401255e-02	ci right 9.490839e-02	k: 154914	n:1640000
KS ci ratio: 1.647414e-01	ci left: 3.166912e-04	ci right 3.741218e-04	k: 565	n:1640000
MUC4   1640000 perm   1244 sec   (1318 perm/sec)   p_kst 3.445122e-04   p_cons 9.445976e-02   p_joint 1.939024e-04

Joint ci ratio: 2.187717e-01	ci left: 1.732718e-04	ci right 2.163933e-04	k: 320	n:1650000
Cons ci ratio: 9.448571e-03	ci left: 9.401657e-02	ci right 9.490970e-02	k: 155863	n:1650000
KS ci ratio: 1.640185e-01	ci left: 3.176775e-04	ci right 3.750092e-04	k: 570	n:1650000
MUC4   1650000 perm   1257 sec   (1312 perm/sec)   p_kst 3.454545e-04   p_cons 9.446242e-02   p_joint 1.939394e-04

Joint ci ratio: 2.177565e-01	ci left: 1.739365e-04	ci right 2.169956e-04	k: 323	n:1660000
Cons ci ratio: 9.419460e-03	ci left: 9.402896e-02	ci right 9.491944e-02	k: 156826	n:1660000
KS ci ratio: 1.634469e-01	ci left: 3.180747e-04	ci right 3.752584e-04	k: 574	n:1660000
MUC4   1660000 perm   1271 sec   (1306 perm/sec)   p_kst 3.457831e-04   p_cons 9.447349e-02   p_joint 1.945783e-04

Joint ci ratio: 2.167552e-01	ci left: 1.745936e-04	ci right 2.175902e-04	k: 326	n:1670000
Cons ci ratio: 9.389301e-03	ci left: 9.406511e-02	ci right 9.495306e-02	k: 157829	n:1670000
KS ci ratio: 1.626007e-01	ci left: 3.196163e-04	ci right 3.767506e-04	k: 580	n:1670000
MUC4   1670000 perm   1284 sec   (1300 perm/sec)   p_kst 3.473054e-04   p_cons 9.450838e-02   p_joint 1.952096e-04

Joint ci ratio: 2.160954e-01	ci left: 1.746803e-04	ci right 2.175500e-04	k: 328	n:1680000
Cons ci ratio: 9.360830e-03	ci left: 9.407529e-02	ci right 9.496063e-02	k: 158789	n:1680000
KS ci ratio: 1.620438e-01	ci left: 3.199981e-04	ci right 3.769856e-04	k: 584	n:1680000
MUC4   1680000 perm   1298 sec   (1294 perm/sec)   p_kst 3.476190e-04   p_cons 9.451726e-02   p_joint 1.952381e-04

Joint ci ratio: 2.154415e-01	ci left: 1.747662e-04	ci right 2.175100e-04	k: 330	n:1690000
Cons ci ratio: 9.331325e-03	ci left: 9.410897e-02	ci right 9.499183e-02	k: 159789	n:1690000
KS ci ratio: 1.614926e-01	ci left: 3.203756e-04	ci right 3.772175e-04	k: 588	n:1690000
MUC4   1690000 perm   1312 sec   (1288 perm/sec)   p_kst 3.479290e-04   p_cons 9.454970e-02   p_joint 1.952663e-04

Joint ci ratio: 2.144717e-01	ci left: 1.754078e-04	ci right 2.180900e-04	k: 333	n:1700000
Cons ci ratio: 9.303217e-03	ci left: 9.412172e-02	ci right 9.500202e-02	k: 160754	n:1700000
KS ci ratio: 1.608114e-01	ci left: 3.213137e-04	ci right 3.780583e-04	k: 593	n:1700000
MUC4   1700000 perm   1325 sec   (1283 perm/sec)   p_kst 3.488235e-04   p_cons 9.456118e-02   p_joint 1.958824e-04

Joint ci ratio: 2.138325e-01	ci left: 1.754889e-04	ci right 2.180469e-04	k: 335	n:1710000
Cons ci ratio: 9.275994e-03	ci left: 9.412265e-02	ci right 9.500036e-02	k: 161699	n:1710000
KS ci ratio: 1.602726e-01	ci left: 3.216798e-04	ci right 3.782805e-04	k: 597	n:1710000
MUC4   1710000 perm   1339 sec   (1277 perm/sec)   p_kst 3.491228e-04   p_cons 9.456082e-02   p_joint 1.959064e-04

Joint ci ratio: 2.128841e-01	ci left: 1.761197e-04	ci right 2.186164e-04	k: 338	n:1720000
Cons ci ratio: 9.247941e-03	ci left: 9.414329e-02	ci right 9.501854e-02	k: 162678	n:1720000
KS ci ratio: 1.598722e-01	ci left: 3.214839e-04	ci right 3.778952e-04	k: 600	n:1720000
MUC4   1720000 perm   1353 sec   (1271 perm/sec)   p_kst 3.488372e-04   p_cons 9.458023e-02   p_joint 1.965116e-04

Joint ci ratio: 2.110246e-01	ci left: 1.783858e-04	ci right 2.210047e-04	k: 344	n:1730000
Cons ci ratio: 9.220857e-03	ci left: 9.415044e-02	ci right 9.502317e-02	k: 163634	n:1730000
KS ci ratio: 1.590799e-01	ci left: 3.229555e-04	ci right 3.793173e-04	k: 606	n:1730000
MUC4   1730000 perm   1367 sec   (1266 perm/sec)   p_kst 3.502890e-04   p_cons 9.458613e-02   p_joint 1.988439e-04

Joint ci ratio: 2.107195e-01	ci left: 1.779049e-04	ci right 2.203396e-04	k: 345	n:1740000
Cons ci ratio: 9.194442e-03	ci left: 9.414948e-02	ci right 9.501969e-02	k: 164576	n:1740000
KS ci ratio: 1.589492e-01	ci left: 3.216512e-04	ci right 3.777349e-04	k: 607	n:1740000
MUC4   1740000 perm   1381 sec   (1260 perm/sec)   p_kst 3.488506e-04   p_cons 9.458391e-02   p_joint 1.982759e-04

Joint ci ratio: 2.104157e-01	ci left: 1.774296e-04	ci right 2.196821e-04	k: 346	n:1750000
Cons ci ratio: 9.168497e-03	ci left: 9.414397e-02	ci right 9.501166e-02	k: 165510	n:1750000
KS ci ratio: 1.586885e-01	ci left: 3.209106e-04	ci right 3.767646e-04	k: 609	n:1750000
MUC4   1750000 perm   1394 sec   (1255 perm/sec)   p_kst 3.480000e-04   p_cons 9.457714e-02   p_joint 1.977143e-04

Joint ci ratio: 2.098119e-01	ci left: 1.774981e-04	ci right 2.196299e-04	k: 348	n:1760000
Cons ci ratio: 9.142285e-03	ci left: 9.414760e-02	ci right 9.501283e-02	k: 166460	n:1760000
KS ci ratio: 1.581707e-01	ci left: 3.212699e-04	ci right 3.769867e-04	k: 613	n:1760000
MUC4   1760000 perm   1408 sec   (1250 perm/sec)   p_kst 3.482955e-04   p_cons 9.457955e-02   p_joint 1.977273e-04

Joint ci ratio: 2.095120e-01	ci left: 1.770306e-04	ci right 2.189837e-04	k: 349	n:1770000
Cons ci ratio: 9.114853e-03	ci left: 9.417825e-02	ci right 9.504115e-02	k: 167458	n:1770000
KS ci ratio: 1.579138e-01	ci left: 3.205401e-04	ci right 3.760314e-04	k: 615	n:1770000
MUC4   1770000 perm   1423 sec   (1244 perm/sec)   p_kst 3.474576e-04   p_cons 9.460904e-02   p_joint 1.971751e-04

Joint ci ratio: 2.095122e-01	ci left: 1.760360e-04	ci right 2.177534e-04	k: 349	n:1780000
Cons ci ratio: 9.090588e-03	ci left: 9.415362e-02	ci right 9.501399e-02	k: 168358	n:1780000
KS ci ratio: 1.576581e-01	ci left: 3.198185e-04	ci right 3.750868e-04	k: 617	n:1780000
MUC4   1780000 perm   1437 sec   (1239 perm/sec)   p_kst 3.466292e-04   p_cons 9.458315e-02   p_joint 1.960674e-04

Joint ci ratio: 2.089161e-01	ci left: 1.761113e-04	ci right 2.177127e-04	k: 351	n:1790000
Cons ci ratio: 9.064859e-03	ci left: 9.416049e-02	ci right 9.501847e-02	k: 169314	n:1790000
KS ci ratio: 1.570241e-01	ci left: 3.207151e-04	ci right 3.758945e-04	k: 622	n:1790000
MUC4   1790000 perm   1451 sec   (1234 perm/sec)   p_kst 3.474860e-04   p_cons 9.458883e-02   p_joint 1.960894e-04

Joint ci ratio: 2.080314e-01	ci left: 1.767126e-04	ci right 2.182567e-04	k: 354	n:1800000
Cons ci ratio: 9.039728e-03	ci left: 9.416008e-02	ci right 9.501567e-02	k: 170257	n:1800000
KS ci ratio: 1.565224e-01	ci left: 3.210684e-04	ci right 3.761156e-04	k: 626	n:1800000
MUC4   1800000 perm   1466 sec   (1228 perm/sec)   p_kst 3.477778e-04   p_cons 9.458722e-02   p_joint 1.966667e-04

Joint ci ratio: 2.071579e-01	ci left: 1.773076e-04	ci right 2.187944e-04	k: 357	n:1810000
Cons ci ratio: 9.013498e-03	ci left: 9.418449e-02	ci right 9.503780e-02	k: 171245	n:1810000
KS ci ratio: 1.557787e-01	ci left: 3.224800e-04	ci right 3.774819e-04	k: 632	n:1810000
MUC4   1810000 perm   1480 sec   (1223 perm/sec)   p_kst 3.491713e-04   p_cons 9.461050e-02   p_joint 1.972376e-04

Joint ci ratio: 2.068692e-01	ci left: 1.768543e-04	ci right 2.181701e-04	k: 358	n:1820000
Cons ci ratio: 8.989540e-03	ci left: 9.416970e-02	ci right 9.502060e-02	k: 172162	n:1820000
KS ci ratio: 1.554109e-01	ci left: 3.222923e-04	ci right 3.771203e-04	k: 635	n:1820000
MUC4   1820000 perm   1495 sec   (1218 perm/sec)   p_kst 3.489011e-04   p_cons 9.459451e-02   p_joint 1.967033e-04

Joint ci ratio: 2.062954e-01	ci left: 1.769243e-04	ci right 2.181273e-04	k: 360	n:1830000
Cons ci ratio: 8.965688e-03	ci left: 9.415671e-02	ci right 9.500523e-02	k: 173082	n:1830000
KS ci ratio: 1.550457e-01	ci left: 3.221068e-04	ci right 3.767625e-04	k: 638	n:1830000
MUC4   1830000 perm   1510 sec   (1212 perm/sec)   p_kst 3.486339e-04   p_cons 9.458033e-02   p_joint 1.967213e-04

Joint ci ratio: 2.060103e-01	ci left: 1.764782e-04	ci right 2.175133e-04	k: 361	n:1840000
Cons ci ratio: 8.941257e-03	ci left: 9.415851e-02	ci right 9.500472e-02	k: 174029	n:1840000
KS ci ratio: 1.545627e-01	ci left: 3.224459e-04	ci right 3.769729e-04	k: 642	n:1840000
MUC4   1840000 perm   1524 sec   (1207 perm/sec)   p_kst 3.489130e-04   p_cons 9.458098e-02   p_joint 1.961957e-04

Joint ci ratio: 2.051619e-01	ci left: 1.770624e-04	ci right 2.180426e-04	k: 364	n:1850000
Cons ci ratio: 8.918011e-03	ci left: 9.414142e-02	ci right 9.498526e-02	k: 174941	n:1850000
KS ci ratio: 1.540841e-01	ci left: 3.227817e-04	ci right 3.771808e-04	k: 646	n:1850000
MUC4   1850000 perm   1539 sec   (1202 perm/sec)   p_kst 3.491892e-04   p_cons 9.456270e-02   p_joint 1.967568e-04

Joint ci ratio: 2.046021e-01	ci left: 1.771305e-04	ci right 2.180006e-04	k: 366	n:1860000
Cons ci ratio: 8.895168e-03	ci left: 9.412022e-02	ci right 9.496169e-02	k: 175845	n:1860000
KS ci ratio: 1.534921e-01	ci left: 3.236310e-04	ci right 3.779445e-04	k: 651	n:1860000
MUC4   1860000 perm   1553 sec   (1197 perm/sec)   p_kst 3.500000e-04   p_cons 9.454032e-02   p_joint 1.967742e-04

Joint ci ratio: 2.046022e-01	ci left: 1.761833e-04	ci right 2.168349e-04	k: 366	n:1870000
Cons ci ratio: 8.872361e-03	ci left: 9.410191e-02	ci right 9.494106e-02	k: 176754	n:1870000
KS ci ratio: 1.533746e-01	ci left: 3.224146e-04	ci right 3.764787e-04	k: 652	n:1870000
MUC4   1870000 perm   1568 sec   (1192 perm/sec)   p_kst 3.486631e-04   p_cons 9.452086e-02   p_joint 1.957219e-04

Joint ci ratio: 2.034961e-01	ci left: 1.772651e-04	ci right 2.179177e-04	k: 370	n:1880000
Cons ci ratio: 8.848162e-03	ci left: 9.411406e-02	ci right 9.495102e-02	k: 177720	n:1880000
KS ci ratio: 1.524435e-01	ci left: 3.247921e-04	ci right 3.788941e-04	k: 660	n:1880000
MUC4   1880000 perm   1583 sec   (1187 perm/sec)   p_kst 3.510638e-04   p_cons 9.453191e-02   p_joint 1.968085e-04

Joint ci ratio: 2.026783e-01	ci left: 1.778338e-04	ci right 2.184326e-04	k: 373	n:1890000
Cons ci ratio: 8.823532e-03	ci left: 9.413823e-02	ci right 9.497306e-02	k: 178709	n:1890000
KS ci ratio: 1.516425e-01	ci left: 3.266365e-04	ci right 3.807339e-04	k: 667	n:1890000
MUC4   1890000 perm   1598 sec   (1183 perm/sec)   p_kst 3.529101e-04   p_cons 9.455503e-02   p_joint 1.973545e-04

Joint ci ratio: 2.024079e-01	ci left: 1.773974e-04	ci right 2.178359e-04	k: 374	n:1900000
Cons ci ratio: 8.800540e-03	ci left: 9.413432e-02	ci right 9.496692e-02	k: 179645	n:1900000
KS ci ratio: 1.514161e-01	ci left: 3.259301e-04	ci right 3.798225e-04	k: 669	n:1900000
MUC4   1900000 perm   1613 sec   (1178 perm/sec)   p_kst 3.521053e-04   p_cons 9.455000e-02   p_joint 1.968421e-04

Joint ci ratio: 2.018703e-01	ci left: 1.774628e-04	ci right 2.177955e-04	k: 376	n:1910000
Cons ci ratio: 8.777297e-03	ci left: 9.413880e-02	ci right 9.496924e-02	k: 180597	n:1910000
KS ci ratio: 1.511906e-01	ci left: 3.252311e-04	ci right 3.789207e-04	k: 671	n:1910000
MUC4   1910000 perm   1629 sec   (1173 perm/sec)   p_kst 3.513089e-04   p_cons 9.455340e-02   p_joint 1.968586e-04

Joint ci ratio: 2.013369e-01	ci left: 1.775276e-04	ci right 2.177553e-04	k: 378	n:1920000
Cons ci ratio: 8.755117e-03	ci left: 9.412609e-02	ci right 9.495430e-02	k: 181516	n:1920000
KS ci ratio: 1.508543e-01	ci left: 3.250406e-04	ci right 3.785686e-04	k: 674	n:1920000
MUC4   1920000 perm   1644 sec   (1168 perm/sec)   p_kst 3.510417e-04   p_cons 9.453958e-02   p_joint 1.968750e-04

Joint ci ratio: 2.010719e-01	ci left: 1.770998e-04	ci right 2.171713e-04	k: 379	n:1930000
Cons ci ratio: 8.731306e-03	ci left: 9.414867e-02	ci right 9.497482e-02	k: 182503	n:1930000
KS ci ratio: 1.504093e-01	ci left: 3.253509e-04	ci right 3.787577e-04	k: 678	n:1930000
MUC4   1930000 perm   1660 sec   (1162 perm/sec)   p_kst 3.512953e-04   p_cons 9.456114e-02   p_joint 1.963731e-04

Joint ci ratio: 2.005448e-01	ci left: 1.771660e-04	ci right 2.171345e-04	k: 381	n:1940000
Cons ci ratio: 8.709550e-03	ci left: 9.413450e-02	ci right 9.495846e-02	k: 183419	n:1940000
KS ci ratio: 1.501883e-01	ci left: 3.246660e-04	ci right 3.778751e-04	k: 680	n:1940000
MUC4   1940000 perm   1676 sec   (1157 perm/sec)   p_kst 3.505155e-04   p_cons 9.454588e-02   p_joint 1.963918e-04

Joint ci ratio: 2.002829e-01	ci left: 1.767445e-04	ci right 2.165595e-04	k: 382	n:1950000
Cons ci ratio: 8.686473e-03	ci left: 9.414966e-02	ci right 9.497155e-02	k: 184392	n:1950000
KS ci ratio: 1.499683e-01	ci left: 3.239882e-04	ci right 3.770014e-04	k: 682	n:1950000
MUC4   1950000 perm   1692 sec   (1153 perm/sec)   p_kst 3.497436e-04   p_cons 9.456000e-02   p_joint 1.958974e-04

Joint ci ratio: 2.000220e-01	ci left: 1.763274e-04	ci right 2.159904e-04	k: 383	n:1960000
Cons ci ratio: 8.663914e-03	ci left: 9.415804e-02	ci right 9.497786e-02	k: 185352	n:1960000
KS ci ratio: 1.498588e-01	ci left: 3.228262e-04	ci right 3.756072e-04	k: 683	n:1960000
MUC4   1960000 perm   1707 sec   (1148 perm/sec)   p_kst 3.484694e-04   p_cons 9.456735e-02   p_joint 1.954082e-04

Joint ci ratio: 1.997621e-01	ci left: 1.759145e-04	ci right 2.154270e-04	k: 384	n:1970000
Cons ci ratio: 8.642375e-03	ci left: 9.414961e-02	ci right 9.496731e-02	k: 186279	n:1970000
KS ci ratio: 1.495312e-01	ci left: 3.226533e-04	ci right 3.752805e-04	k: 686	n:1970000
MUC4   1970000 perm   1723 sec   (1143 perm/sec)   p_kst 3.482234e-04   p_cons 9.455787e-02   p_joint 1.949239e-04

Joint ci ratio: 1.989883e-01	ci left: 1.764656e-04	ci right 2.159296e-04	k: 387	n:1980000
Cons ci ratio: 8.620055e-03	ci left: 9.415993e-02	ci right 9.497560e-02	k: 187243	n:1980000
KS ci ratio: 1.489900e-01	ci left: 3.234547e-04	ci right 3.760046e-04	k: 691	n:1980000
MUC4   1980000 perm   1739 sec   (1139 perm/sec)   p_kst 3.489899e-04   p_cons 9.456717e-02   p_joint 1.954545e-04

Joint ci ratio: 1.979703e-01	ci left: 1.774890e-04	ci right 2.169544e-04	k: 391	n:1990000
Cons ci ratio: 8.599295e-03	ci left: 9.414256e-02	ci right 9.495611e-02	k: 188152	n:1990000
KS ci ratio: 1.484545e-01	ci left: 3.242484e-04	ci right 3.767211e-04	k: 696	n:1990000
MUC4   1990000 perm   1754 sec   (1134 perm/sec)   p_kst 3.497487e-04   p_cons 9.454874e-02   p_joint 1.964824e-04

Joint ci ratio: 1.977184e-01	ci left: 1.770768e-04	ci right 2.163943e-04	k: 392	n:2000000
Cons ci ratio: 8.577556e-03	ci left: 9.414783e-02	ci right 9.495935e-02	k: 189106	n:2000000
KS ci ratio: 1.479249e-01	ci left: 3.250344e-04	ci right 3.774301e-04	k: 701	n:2000000
MUC4   2000000 perm   1769 sec   (1130 perm/sec)   p_kst 3.505000e-04   p_cons 9.455300e-02   p_joint 1.960000e-04

Joint ci ratio: 1.972172e-01	ci left: 1.771417e-04	ci right 2.163619e-04	k: 394	n:2010000
Cons ci ratio: 8.555584e-03	ci left: 9.416099e-02	ci right 9.497053e-02	k: 190076	n:2010000
KS ci ratio: 1.476098e-01	ci left: 3.248547e-04	ci right 3.771000e-04	k: 704	n:2010000
MUC4   2010000 perm   1785 sec   (1126 perm/sec)   p_kst 3.502488e-04   p_cons 9.456517e-02   p_joint 1.960199e-04

Joint ci ratio: 1.964724e-01	ci left: 1.776767e-04	ci right 2.168490e-04	k: 397	n:2020000
Cons ci ratio: 8.533879e-03	ci left: 9.417204e-02	ci right 9.497962e-02	k: 191042	n:2020000
KS ci ratio: 1.471928e-01	ci left: 3.251537e-04	ci right 3.772864e-04	k: 708	n:2020000
MUC4   2020000 perm   1801 sec   (1122 perm/sec)   p_kst 3.504950e-04   p_cons 9.457525e-02   p_joint 1.965347e-04

Joint ci ratio: 1.957361e-01	ci left: 1.782067e-04	ci right 2.173311e-04	k: 400	n:2030000
Cons ci ratio: 8.514248e-03	ci left: 9.414464e-02	ci right 9.495011e-02	k: 191930	n:2030000
KS ci ratio: 1.468824e-01	ci left: 3.249754e-04	ci right 3.769600e-04	k: 711	n:2030000
MUC4   2030000 perm   1817 sec   (1117 perm/sec)   p_kst 3.502463e-04   p_cons 9.454680e-02   p_joint 1.970443e-04

Joint ci ratio: 1.954925e-01	ci left: 1.777993e-04	ci right 2.167799e-04	k: 401	n:2040000
Cons ci ratio: 8.492709e-03	ci left: 9.415861e-02	ci right 9.496215e-02	k: 192902	n:2040000
KS ci ratio: 1.467795e-01	ci left: 3.238546e-04	ci right 3.756203e-04	k: 712	n:2040000
MUC4   2040000 perm   1833 sec   (1113 perm/sec)   p_kst 3.490196e-04   p_cons 9.455980e-02   p_joint 1.965686e-04

Joint ci ratio: 1.952499e-01	ci left: 1.773960e-04	ci right 2.162341e-04	k: 402	n:2050000
Cons ci ratio: 8.470682e-03	ci left: 9.418559e-02	ci right 9.498727e-02	k: 193901	n:2050000
KS ci ratio: 1.461657e-01	ci left: 3.250944e-04	ci right 3.768220e-04	k: 718	n:2050000
MUC4   2050000 perm   1849 sec   (1109 perm/sec)   p_kst 3.502439e-04   p_cons 9.458585e-02   p_joint 1.960976e-04

Joint ci ratio: 1.952500e-01	ci left: 1.765348e-04	ci right 2.151845e-04	k: 402	n:2060000
Cons ci ratio: 8.449974e-03	ci left: 9.418905e-02	ci right 9.498879e-02	k: 194852	n:2060000
KS ci ratio: 1.461658e-01	ci left: 3.235162e-04	ci right 3.749928e-04	k: 718	n:2060000
MUC4   2060000 perm   1866 sec   (1104 perm/sec)   p_kst 3.485437e-04   p_cons 9.458835e-02   p_joint 1.951456e-04

Joint ci ratio: 1.952501e-01	ci left: 1.756820e-04	ci right 2.141449e-04	k: 402	n:2070000
Cons ci ratio: 8.430106e-03	ci left: 9.417850e-02	ci right 9.497626e-02	k: 195774	n:2070000
KS ci ratio: 1.460643e-01	ci left: 3.224187e-04	ci right 3.736820e-04	k: 719	n:2070000
MUC4   2070000 perm   1882 sec   (1100 perm/sec)   p_kst 3.473430e-04   p_cons 9.457681e-02   p_joint 1.942029e-04

Joint ci ratio: 1.950083e-01	ci left: 1.752946e-04	ci right 2.136196e-04	k: 403	n:2080000
Cons ci ratio: 8.409057e-03	ci left: 9.419492e-02	ci right 9.499082e-02	k: 196752	n:2080000
KS ci ratio: 1.459631e-01	ci left: 3.213319e-04	ci right 3.723838e-04	k: 720	n:2080000
MUC4   2080000 perm   1899 sec   (1095 perm/sec)   p_kst 3.461538e-04   p_cons 9.459231e-02   p_joint 1.937500e-04

Joint ci ratio: 1.950084e-01	ci left: 1.744559e-04	ci right 2.125975e-04	k: 403	n:2090000
Cons ci ratio: 8.390367e-03	ci left: 9.416630e-02	ci right 9.496018e-02	k: 197636	n:2090000
KS ci ratio: 1.458621e-01	ci left: 3.202554e-04	ci right 3.710980e-04	k: 721	n:2090000
MUC4   2090000 perm   1916 sec   (1091 perm/sec)   p_kst 3.449761e-04   p_cons 9.456268e-02   p_joint 1.928230e-04

Joint ci ratio: 1.945275e-01	ci left: 1.745311e-04	ci right 2.125839e-04	k: 405	n:2100000
Cons ci ratio: 8.369519e-03	ci left: 9.418453e-02	ci right 9.497659e-02	k: 198618	n:2100000
KS ci ratio: 1.454597e-01	ci left: 3.205657e-04	ci right 3.713050e-04	k: 725	n:2100000
MUC4   2100000 perm   1933 sec   (1086 perm/sec)   p_kst 3.452381e-04   p_cons 9.458000e-02   p_joint 1.928571e-04

Joint ci ratio: 1.942884e-01	ci left: 1.741548e-04	ci right 2.120734e-04	k: 406	n:2110000
Cons ci ratio: 8.350352e-03	ci left: 9.417137e-02	ci right 9.496149e-02	k: 199534	n:2110000
KS ci ratio: 1.450606e-01	ci left: 3.208733e-04	ci right 3.715099e-04	k: 729	n:2110000
MUC4   2110000 perm   1949 sec   (1082 perm/sec)   p_kst 3.454976e-04   p_cons 9.456588e-02   p_joint 1.924171e-04

Joint ci ratio: 1.938128e-01	ci left: 1.742309e-04	ci right 2.120622e-04	k: 408	n:2120000
Cons ci ratio: 8.330879e-03	ci left: 9.416729e-02	ci right 9.495552e-02	k: 200469	n:2120000
KS ci ratio: 1.445663e-01	ci left: 3.216328e-04	ci right 3.722013e-04	k: 734	n:2120000
MUC4   2120000 perm   1966 sec   (1078 perm/sec)   p_kst 3.462264e-04   p_cons 9.456085e-02   p_joint 1.924528e-04

Joint ci ratio: 1.921750e-01	ci left: 1.765405e-04	ci right 2.145116e-04	k: 415	n:2130000
Cons ci ratio: 8.310698e-03	ci left: 9.418058e-02	ci right 9.496700e-02	k: 201441	n:2130000
KS ci ratio: 1.434962e-01	ci left: 3.251010e-04	ci right 3.758042e-04	k: 745	n:2130000
MUC4   2130000 perm   1982 sec   (1074 perm/sec)   p_kst 3.497653e-04   p_cons 9.457324e-02   p_joint 1.948357e-04

Joint ci ratio: 1.919445e-01	ci left: 1.761604e-04	ci right 2.139989e-04	k: 416	n:2140000
Cons ci ratio: 8.291230e-03	ci left: 9.418209e-02	ci right 9.496667e-02	k: 202388	n:2140000
KS ci ratio: 1.431130e-01	ci left: 3.253840e-04	ci right 3.759842e-04	k: 749	n:2140000
MUC4   2140000 perm   2000 sec   (1070 perm/sec)   p_kst 3.500000e-04   p_cons 9.457383e-02   p_joint 1.943925e-04

Joint ci ratio: 1.917148e-01	ci left: 1.757838e-04	ci right 2.134910e-04	k: 417	n:2150000
Cons ci ratio: 8.271964e-03	ci left: 9.418219e-02	ci right 9.496495e-02	k: 203332	n:2150000
KS ci ratio: 1.427329e-01	ci left: 3.256645e-04	ci right 3.761624e-04	k: 753	n:2150000
MUC4   2150000 perm   2016 sec   (1066 perm/sec)   p_kst 3.502326e-04   p_cons 9.457302e-02   p_joint 1.939535e-04

Joint ci ratio: 1.912578e-01	ci left: 1.758515e-04	ci right 2.134729e-04	k: 419	n:2160000
Cons ci ratio: 8.252811e-03	ci left: 9.418276e-02	ci right 9.496370e-02	k: 204277	n:2160000
KS ci ratio: 1.425440e-01	ci left: 3.250497e-04	ci right 3.753798e-04	k: 755	n:2160000
MUC4   2160000 perm   2033 sec   (1062 perm/sec)   p_kst 3.495370e-04   p_cons 9.457269e-02   p_joint 1.939815e-04

Joint ci ratio: 1.908040e-01	ci left: 1.759187e-04	ci right 2.134548e-04	k: 421	n:2170000
Cons ci ratio: 8.233678e-03	ci left: 9.418562e-02	ci right 9.496477e-02	k: 205227	n:2170000
KS ci ratio: 1.423559e-01	ci left: 3.244406e-04	ci right 3.746045e-04	k: 757	n:2170000
MUC4   2170000 perm   2050 sec   (1058 perm/sec)   p_kst 3.488479e-04   p_cons 9.457465e-02   p_joint 1.940092e-04

Joint ci ratio: 1.903535e-01	ci left: 1.759854e-04	ci right 2.134368e-04	k: 423	n:2180000
Cons ci ratio: 8.214085e-03	ci left: 9.420083e-02	ci right 9.497823e-02	k: 206204	n:2180000
KS ci ratio: 1.420751e-01	ci left: 3.242795e-04	ci right 3.743112e-04	k: 760	n:2180000
MUC4   2180000 perm   2068 sec   (1054 perm/sec)   p_kst 3.486239e-04   p_cons 9.458899e-02   p_joint 1.940367e-04

Joint ci ratio: 1.899061e-01	ci left: 1.760516e-04	ci right 2.134189e-04	k: 425	n:2190000
Cons ci ratio: 8.194848e-03	ci left: 9.421133e-02	ci right 9.498700e-02	k: 207171	n:2190000
KS ci ratio: 1.413340e-01	ci left: 3.263222e-04	ci right 3.763844e-04	k: 768	n:2190000
MUC4   2190000 perm   2085 sec   (1050 perm/sec)   p_kst 3.506849e-04   p_cons 9.459863e-02   p_joint 1.940639e-04

Joint ci ratio: 1.894619e-01	ci left: 1.761173e-04	ci right 2.134010e-04	k: 427	n:2200000
Cons ci ratio: 8.176810e-03	ci left: 9.419952e-02	ci right 9.497337e-02	k: 208089	n:2200000
KS ci ratio: 1.410591e-01	ci left: 3.261544e-04	ci right 3.760853e-04	k: 771	n:2200000
MUC4   2200000 perm   2102 sec   (1046 perm/sec)   p_kst 3.504545e-04   p_cons 9.458591e-02   p_joint 1.940909e-04

Joint ci ratio: 1.894620e-01	ci left: 1.753204e-04	ci right 2.124354e-04	k: 427	n:2210000
Cons ci ratio: 8.159278e-03	ci left: 9.417968e-02	ci right 9.495170e-02	k: 208989	n:2210000
KS ci ratio: 1.407858e-01	ci left: 3.259882e-04	ci right 3.757889e-04	k: 774	n:2210000
MUC4   2210000 perm   2120 sec   (1043 perm/sec)   p_kst 3.502262e-04   p_cons 9.456516e-02   p_joint 1.932127e-04

Joint ci ratio: 1.892411e-01	ci left: 1.749597e-04	ci right 2.119503e-04	k: 428	n:2220000
Cons ci ratio: 8.140745e-03	ci left: 9.418340e-02	ci right 9.495369e-02	k: 209941	n:2220000
KS ci ratio: 1.406046e-01	ci left: 3.253890e-04	ci right 3.750287e-04	k: 776	n:2220000
MUC4   2220000 perm   2137 sec   (1039 perm/sec)   p_kst 3.495495e-04   p_cons 9.456802e-02   p_joint 1.927928e-04

Joint ci ratio: 1.890209e-01	ci left: 1.746024e-04	ci right 2.114695e-04	k: 429	n:2230000
Cons ci ratio: 8.122401e-03	ci left: 9.418575e-02	ci right 9.495432e-02	k: 210890	n:2230000
KS ci ratio: 1.404240e-01	ci left: 3.247952e-04	ci right 3.742753e-04	k: 778	n:2230000
MUC4   2230000 perm   2154 sec   (1035 perm/sec)   p_kst 3.488789e-04   p_cons 9.456951e-02   p_joint 1.923767e-04

Joint ci ratio: 1.879313e-01	ci left: 1.759497e-04	ci right 2.128627e-04	k: 434	n:2240000
Cons ci ratio: 8.103990e-03	ci left: 9.419209e-02	ci right 9.495896e-02	k: 211848	n:2240000
KS ci ratio: 1.396196e-01	ci left: 3.272223e-04	ci right 3.767630e-04	k: 787	n:2240000
MUC4   2240000 perm   2172 sec   (1031 perm/sec)   p_kst 3.513393e-04   p_cons 9.457500e-02   p_joint 1.937500e-04

Joint ci ratio: 1.875008e-01	ci left: 1.760148e-04	ci right 2.128473e-04	k: 436	n:2250000
Cons ci ratio: 8.086901e-03	ci left: 9.417309e-02	ci right 9.493818e-02	k: 212749	n:2250000
KS ci ratio: 1.394428e-01	ci left: 3.266258e-04	ci right 3.760084e-04	k: 789	n:2250000
MUC4   2250000 perm   2189 sec   (1028 perm/sec)   p_kst 3.506667e-04   p_cons 9.455511e-02   p_joint 1.937778e-04

Joint ci ratio: 1.872867e-01	ci left: 1.756577e-04	ci right 2.123687e-04	k: 437	n:2260000
Cons ci ratio: 8.069147e-03	ci left: 9.417060e-02	ci right 9.493398e-02	k: 213687	n:2260000
KS ci ratio: 1.393547e-01	ci left: 3.256076e-04	ci right 3.748025e-04	k: 790	n:2260000
MUC4   2260000 perm   2207 sec   (1024 perm/sec)   p_kst 3.495575e-04   p_cons 9.455177e-02   p_joint 1.933628e-04

Joint ci ratio: 1.866485e-01	ci left: 1.761437e-04	ci right 2.128165e-04	k: 440	n:2270000
Cons ci ratio: 8.051365e-03	ci left: 9.417121e-02	ci right 9.493291e-02	k: 214632	n:2270000
KS ci ratio: 1.390912e-01	ci left: 3.254488e-04	ci right 3.745190e-04	k: 793	n:2270000
MUC4   2270000 perm   2225 sec   (1020 perm/sec)   p_kst 3.493392e-04   p_cons 9.455154e-02   p_joint 1.938326e-04

Joint ci ratio: 1.866486e-01	ci left: 1.753711e-04	ci right 2.118831e-04	k: 440	n:2280000
Cons ci ratio: 8.034173e-03	ci left: 9.416175e-02	ci right 9.492174e-02	k: 215554	n:2280000
KS ci ratio: 1.390913e-01	ci left: 3.240214e-04	ci right 3.728764e-04	k: 793	n:2280000
MUC4   2280000 perm   2243 sec   (1017 perm/sec)   p_kst 3.478070e-04   p_cons 9.454123e-02   p_joint 1.929825e-04

Joint ci ratio: 1.864373e-01	ci left: 1.750216e-04	ci right 2.114149e-04	k: 441	n:2290000
Cons ci ratio: 8.016743e-03	ci left: 9.415978e-02	ci right 9.491810e-02	k: 216493	n:2290000
KS ci ratio: 1.386554e-01	ci left: 3.247140e-04	ci right 3.735073e-04	k: 798	n:2290000
MUC4   2290000 perm   2260 sec   (1013 perm/sec)   p_kst 3.484716e-04   p_cons 9.453843e-02   p_joint 1.925764e-04

Joint ci ratio: 1.862268e-01	ci left: 1.746751e-04	ci right 2.109508e-04	k: 442	n:2300000
Cons ci ratio: 7.998126e-03	ci left: 9.418561e-02	ci right 9.494237e-02	k: 217496	n:2300000
KS ci ratio: 1.385688e-01	ci left: 3.237219e-04	ci right 3.723332e-04	k: 799	n:2300000
MUC4   2300000 perm   2278 sec   (1010 perm/sec)   p_kst 3.473913e-04   p_cons 9.456348e-02   p_joint 1.921739e-04

Joint ci ratio: 1.860170e-01	ci left: 1.743317e-04	ci right 2.104906e-04	k: 443	n:2310000
Cons ci ratio: 7.981212e-03	ci left: 9.417751e-02	ci right 9.493259e-02	k: 218421	n:2310000
KS ci ratio: 1.384823e-01	ci left: 3.227384e-04	ci right 3.711693e-04	k: 800	n:2310000
MUC4   2310000 perm   2296 sec   (1006 perm/sec)   p_kst 3.463203e-04   p_cons 9.455455e-02   p_joint 1.917749e-04

Joint ci ratio: 1.858080e-01	ci left: 1.739912e-04	ci right 2.100344e-04	k: 444	n:2320000
Cons ci ratio: 7.963763e-03	ci left: 9.418325e-02	ci right 9.493672e-02	k: 219378	n:2320000
KS ci ratio: 1.383098e-01	ci left: 3.221795e-04	ci right 3.704614e-04	k: 802	n:2320000
MUC4   2320000 perm   2314 sec   (1003 perm/sec)   p_kst 3.456897e-04   p_cons 9.455948e-02   p_joint 1.913793e-04

Joint ci ratio: 1.853918e-01	ci left: 1.740629e-04	ci right 2.100312e-04	k: 446	n:2330000
Cons ci ratio: 7.947523e-03	ci left: 9.416539e-02	ci right 9.491717e-02	k: 220280	n:2330000
KS ci ratio: 1.380522e-01	ci left: 3.220398e-04	ci right 3.702034e-04	k: 805	n:2330000
MUC4   2330000 perm   2332 sec   (999 perm/sec)   p_kst 3.454936e-04   p_cons 9.454077e-02   p_joint 1.914163e-04

Joint ci ratio: 1.853919e-01	ci left: 1.733191e-04	ci right 2.091336e-04	k: 446	n:2340000
Cons ci ratio: 7.930967e-03	ci left: 9.415663e-02	ci right 9.490677e-02	k: 221203	n:2340000
KS ci ratio: 1.378813e-01	ci left: 3.214887e-04	ci right 3.695056e-04	k: 807	n:2340000
MUC4   2340000 perm   2350 sec   (996 perm/sec)   p_kst 3.448718e-04   p_cons 9.453120e-02   p_joint 1.905983e-04

Joint ci ratio: 1.853920e-01	ci left: 1.725815e-04	ci right 2.082437e-04	k: 446	n:2350000
Cons ci ratio: 7.914101e-03	ci left: 9.415687e-02	ci right 9.490541e-02	k: 222147	n:2350000
KS ci ratio: 1.377110e-01	ci left: 3.209424e-04	ci right 3.688136e-04	k: 809	n:2350000
MUC4   2350000 perm   2369 sec   (992 perm/sec)   p_kst 3.442553e-04   p_cons 9.453064e-02   p_joint 1.897872e-04

Joint ci ratio: 1.849786e-01	ci left: 1.726584e-04	ci right 2.082480e-04	k: 448	n:2360000
Cons ci ratio: 7.897928e-03	ci left: 9.414442e-02	ci right 9.489132e-02	k: 223061	n:2360000
KS ci ratio: 1.374567e-01	ci left: 3.208099e-04	ci right 3.685657e-04	k: 812	n:2360000
MUC4   2360000 perm   2387 sec   (989 perm/sec)   p_kst 3.440678e-04   p_cons 9.451737e-02   p_joint 1.898305e-04

Joint ci ratio: 1.841600e-01	ci left: 1.735397e-04	ci right 2.091350e-04	k: 452	n:2370000
Cons ci ratio: 7.881562e-03	ci left: 9.413839e-02	ci right 9.488369e-02	k: 223990	n:2370000
KS ci ratio: 1.369522e-01	ci left: 3.219010e-04	ci right 3.696291e-04	k: 818	n:2370000
MUC4   2370000 perm   2405 sec   (985 perm/sec)   p_kst 3.451477e-04   p_cons 9.451055e-02   p_joint 1.907173e-04

Joint ci ratio: 1.833522e-01	ci left: 1.744139e-04	ci right 2.100141e-04	k: 456	n:2380000
Cons ci ratio: 7.864622e-03	ci left: 9.414710e-02	ci right 9.489086e-02	k: 224954	n:2380000
KS ci ratio: 1.365360e-01	ci left: 3.225775e-04	ci right 3.702487e-04	k: 823	n:2380000
MUC4   2380000 perm   2424 sec   (982 perm/sec)   p_kst 3.457983e-04   p_cons 9.451849e-02   p_joint 1.915966e-04

Joint ci ratio: 1.831520e-01	ci left: 1.740834e-04	ci right 2.095730e-04	k: 457	n:2390000
Cons ci ratio: 7.846966e-03	ci left: 9.417370e-02	ci right 9.491599e-02	k: 225961	n:2390000
KS ci ratio: 1.363706e-01	ci left: 3.220360e-04	ci right 3.695649e-04	k: 825	n:2390000
MUC4   2390000 perm   2443 sec   (978 perm/sec)   p_kst 3.451883e-04   p_cons 9.454435e-02   p_joint 1.912134e-04

Joint ci ratio: 1.825550e-01	ci left: 1.745508e-04	ci right 2.100069e-04	k: 460	n:2400000
Cons ci ratio: 7.831086e-03	ci left: 9.416389e-02	ci right 9.490459e-02	k: 226881	n:2400000
KS ci ratio: 1.358780e-01	ci left: 3.231091e-04	ci right 3.706101e-04	k: 831	n:2400000
MUC4   2400000 perm   2461 sec   (975 perm/sec)   p_kst 3.462500e-04   p_cons 9.453375e-02   p_joint 1.916667e-04

Joint ci ratio: 1.821603e-01	ci left: 1.746185e-04	ci right 2.100032e-04	k: 462	n:2410000
Cons ci ratio: 7.814204e-03	ci left: 9.417818e-02	ci right 9.491740e-02	k: 227859	n:2410000
KS ci ratio: 1.355525e-01	ci left: 3.233718e-04	ci right 3.707884e-04	k: 835	n:2410000
MUC4   2410000 perm   2480 sec   (972 perm/sec)   p_kst 3.464730e-04   p_cons 9.454730e-02   p_joint 1.917012e-04

Joint ci ratio: 1.813784e-01	ci left: 1.754747e-04	ci right 2.108635e-04	k: 466	n:2420000
Cons ci ratio: 7.797486e-03	ci left: 9.419113e-02	ci right 9.492885e-02	k: 228834	n:2420000
KS ci ratio: 1.351489e-01	ci left: 3.240317e-04	ci right 3.713922e-04	k: 840	n:2420000
MUC4   2420000 perm   2499 sec   (968 perm/sec)   p_kst 3.471074e-04   p_cons 9.455950e-02   p_joint 1.925620e-04

Joint ci ratio: 1.809913e-01	ci left: 1.755383e-04	ci right 2.108560e-04	k: 468	n:2430000
Cons ci ratio: 7.781904e-03	ci left: 9.418137e-02	ci right 9.491754e-02	k: 229754	n:2430000
KS ci ratio: 1.349885e-01	ci left: 3.234935e-04	ci right 3.707147e-04	k: 842	n:2430000
MUC4   2430000 perm   2519 sec   (965 perm/sec)   p_kst 3.465021e-04   p_cons 9.454897e-02   p_joint 1.925926e-04

Joint ci ratio: 1.806066e-01	ci left: 1.756014e-04	ci right 2.108486e-04	k: 470	n:2440000
Cons ci ratio: 7.766620e-03	ci left: 9.416719e-02	ci right 9.490180e-02	k: 230663	n:2440000
KS ci ratio: 1.345106e-01	ci left: 3.245438e-04	ci right 3.717372e-04	k: 848	n:2440000
MUC4   2440000 perm   2538 sec   (961 perm/sec)   p_kst 3.475410e-04   p_cons 9.453402e-02   p_joint 1.926230e-04

Joint ci ratio: 1.802244e-01	ci left: 1.756642e-04	ci right 2.108411e-04	k: 472	n:2450000
Cons ci ratio: 7.750834e-03	ci left: 9.416617e-02	ci right 9.489927e-02	k: 231604	n:2450000
KS ci ratio: 1.342736e-01	ci left: 3.244025e-04	ci right 3.714856e-04	k: 851	n:2450000
MUC4   2450000 perm   2557 sec   (958 perm/sec)   p_kst 3.473469e-04   p_cons 9.453224e-02   p_joint 1.926531e-04

Joint ci ratio: 1.798445e-01	ci left: 1.757264e-04	ci right 2.108337e-04	k: 474	n:2460000
Cons ci ratio: 7.735382e-03	ci left: 9.415989e-02	ci right 9.489147e-02	k: 232532	n:2460000
KS ci ratio: 1.338813e-01	ci left: 3.250481e-04	ci right 3.720761e-04	k: 856	n:2460000
MUC4   2460000 perm   2576 sec   (955 perm/sec)   p_kst 3.479675e-04   p_cons 9.452520e-02   p_joint 1.926829e-04

Joint ci ratio: 1.792792e-01	ci left: 1.761750e-04	ci right 2.112492e-04	k: 477	n:2470000
Cons ci ratio: 7.720699e-03	ci left: 9.413870e-02	ci right 9.486873e-02	k: 233423	n:2470000
KS ci ratio: 1.334150e-01	ci left: 3.260801e-04	ci right 3.730800e-04	k: 862	n:2470000
MUC4   2470000 perm   2595 sec   (952 perm/sec)   p_kst 3.489879e-04   p_cons 9.450324e-02   p_joint 1.931174e-04

Joint ci ratio: 1.789054e-01	ci left: 1.762349e-04	ci right 2.112400e-04	k: 479	n:2480000
Cons ci ratio: 7.704664e-03	ci left: 9.414949e-02	ci right 9.487807e-02	k: 234393	n:2480000
KS ci ratio: 1.331069e-01	ci left: 3.263244e-04	ci right 3.732423e-04	k: 866	n:2480000
MUC4   2480000 perm   2615 sec   (948 perm/sec)   p_kst 3.491935e-04   p_cons 9.451331e-02   p_joint 1.931452e-04

Joint ci ratio: 1.789054e-01	ci left: 1.755271e-04	ci right 2.103916e-04	k: 479	n:2490000
Cons ci ratio: 7.688837e-03	ci left: 9.415778e-02	ci right 9.488493e-02	k: 235357	n:2490000
KS ci ratio: 1.328009e-01	ci left: 3.265668e-04	ci right 3.734032e-04	k: 870	n:2490000
MUC4   2490000 perm   2634 sec   (945 perm/sec)   p_kst 3.493976e-04   p_cons 9.452088e-02   p_joint 1.923695e-04

Joint ci ratio: 1.785339e-01	ci left: 1.755892e-04	ci right 2.103858e-04	k: 481	n:2500000
Cons ci ratio: 7.673573e-03	ci left: 9.415563e-02	ci right 9.488131e-02	k: 236295	n:2500000
KS ci ratio: 1.324970e-01	ci left: 3.268075e-04	ci right 3.735626e-04	k: 874	n:2500000
MUC4   2500000 perm   2654 sec   (942 perm/sec)   p_kst 3.496000e-04   p_cons 9.451800e-02   p_joint 1.924000e-04

Joint ci ratio: 1.783490e-01	ci left: 1.752703e-04	ci right 2.099638e-04	k: 482	n:2510000
Cons ci ratio: 7.658043e-03	ci left: 9.416145e-02	ci right 9.488570e-02	k: 237253	n:2510000
KS ci ratio: 1.322704e-01	ci left: 3.266611e-04	ci right 3.733091e-04	k: 877	n:2510000
MUC4   2510000 perm   2673 sec   (939 perm/sec)   p_kst 3.494024e-04   p_cons 9.452311e-02   p_joint 1.920319e-04

Joint ci ratio: 1.783490e-01	ci left: 1.745748e-04	ci right 2.091306e-04	k: 482	n:2520000
Cons ci ratio: 7.642820e-03	ci left: 9.416247e-02	ci right 9.488528e-02	k: 238199	n:2520000
KS ci ratio: 1.321201e-01	ci left: 3.261322e-04	ci right 3.726476e-04	k: 879	n:2520000
MUC4   2520000 perm   2693 sec   (936 perm/sec)   p_kst 3.488095e-04   p_cons 9.452341e-02   p_joint 1.912698e-04

Joint ci ratio: 1.781647e-01	ci left: 1.742624e-04	ci right 2.087169e-04	k: 483	n:2530000
Cons ci ratio: 7.627353e-03	ci left: 9.417099e-02	ci right 9.489239e-02	k: 239164	n:2530000
KS ci ratio: 1.320451e-01	ci left: 3.252253e-04	ci right 3.715830e-04	k: 880	n:2530000
MUC4   2530000 perm   2712 sec   (933 perm/sec)   p_kst 3.478261e-04   p_cons 9.453123e-02   p_joint 1.909091e-04

Joint ci ratio: 1.776151e-01	ci left: 1.747048e-04	ci right 2.091288e-04	k: 486	n:2540000
Cons ci ratio: 7.612382e-03	ci left: 9.417039e-02	ci right 9.489037e-02	k: 240106	n:2540000
KS ci ratio: 1.318209e-01	ci left: 3.250870e-04	ci right 3.713402e-04	k: 883	n:2540000
MUC4   2540000 perm   2732 sec   (930 perm/sec)   p_kst 3.476378e-04   p_cons 9.452992e-02   p_joint 1.913386e-04

Joint ci ratio: 1.774330e-01	ci left: 1.743944e-04	ci right 2.087182e-04	k: 487	n:2550000
Cons ci ratio: 7.598038e-03	ci left: 9.415767e-02	ci right 9.487619e-02	k: 241017	n:2550000
KS ci ratio: 1.314496e-01	ci left: 3.257084e-04	ci right 3.719092e-04	k: 888	n:2550000
MUC4   2550000 perm   2751 sec   (927 perm/sec)   p_kst 3.482353e-04   p_cons 9.451647e-02   p_joint 1.909804e-04

Joint ci ratio: 1.770706e-01	ci left: 1.744598e-04	ci right 2.087188e-04	k: 489	n:2560000
Cons ci ratio: 7.584225e-03	ci left: 9.413491e-02	ci right 9.485195e-02	k: 241902	n:2560000
KS ci ratio: 1.311549e-01	ci left: 3.259473e-04	ci right 3.720703e-04	k: 892	n:2560000
MUC4   2560000 perm   2771 sec   (924 perm/sec)   p_kst 3.484375e-04   p_cons 9.449297e-02   p_joint 1.910156e-04

Joint ci ratio: 1.770706e-01	ci left: 1.737809e-04	ci right 2.079067e-04	k: 489	n:2570000
Cons ci ratio: 7.569557e-03	ci left: 9.413330e-02	ci right 9.484893e-02	k: 242841	n:2570000
KS ci ratio: 1.310083e-01	ci left: 3.254317e-04	ci right 3.714262e-04	k: 894	n:2570000
MUC4   2570000 perm   2791 sec   (921 perm/sec)   p_kst 3.478599e-04   p_cons 9.449066e-02   p_joint 1.902724e-04

Joint ci ratio: 1.765310e-01	ci left: 1.742187e-04	ci right 2.083150e-04	k: 492	n:2580000
Cons ci ratio: 7.554068e-03	ci left: 9.415222e-02	ci right 9.486652e-02	k: 243833	n:2580000
KS ci ratio: 1.306438e-01	ci left: 3.260449e-04	ci right 3.719880e-04	k: 899	n:2580000
MUC4   2580000 perm   2811 sec   (918 perm/sec)   p_kst 3.484496e-04   p_cons 9.450891e-02   p_joint 1.906977e-04

Joint ci ratio: 1.765311e-01	ci left: 1.735460e-04	ci right 2.075107e-04	k: 492	n:2590000
Cons ci ratio: 7.539217e-03	ci left: 9.415865e-02	ci right 9.487160e-02	k: 244793	n:2590000
KS ci ratio: 1.305714e-01	ci left: 3.251595e-04	ci right 3.709504e-04	k: 900	n:2590000
MUC4   2590000 perm   2832 sec   (915 perm/sec)   p_kst 3.474903e-04   p_cons 9.451467e-02   p_joint 1.899614e-04

Joint ci ratio: 1.761741e-01	ci left: 1.736138e-04	ci right 2.075158e-04	k: 494	n:2600000
Cons ci ratio: 7.524605e-03	ci left: 9.416159e-02	ci right 9.487316e-02	k: 245744	n:2600000
KS ci ratio: 1.302106e-01	ci left: 3.257693e-04	ci right 3.715095e-04	k: 905	n:2600000
MUC4   2600000 perm   2852 sec   (912 perm/sec)   p_kst 3.480769e-04   p_cons 9.451692e-02   p_joint 1.900000e-04

Joint ci ratio: 1.758193e-01	ci left: 1.736812e-04	ci right 2.075207e-04	k: 496	n:2610000
Cons ci ratio: 7.510869e-03	ci left: 9.414652e-02	ci right 9.485668e-02	k: 246648	n:2610000
KS ci ratio: 1.299241e-01	ci left: 3.260038e-04	ci right 3.716685e-04	k: 909	n:2610000
MUC4   2610000 perm   2872 sec   (909 perm/sec)   p_kst 3.482759e-04   p_cons 9.450115e-02   p_joint 1.900383e-04

Joint ci ratio: 1.758193e-01	ci left: 1.730183e-04	ci right 2.067286e-04	k: 496	n:2620000
Cons ci ratio: 7.497525e-03	ci left: 9.412433e-02	ci right 9.483305e-02	k: 247533	n:2620000
KS ci ratio: 1.296394e-01	ci left: 3.262367e-04	ci right 3.718261e-04	k: 913	n:2620000
MUC4   2620000 perm   2892 sec   (906 perm/sec)   p_kst 3.484733e-04   p_cons 9.447824e-02   p_joint 1.893130e-04

Joint ci ratio: 1.754666e-01	ci left: 1.730874e-04	ci right 2.067365e-04	k: 498	n:2630000
Cons ci ratio: 7.483370e-03	ci left: 9.412243e-02	ci right 9.482979e-02	k: 248471	n:2630000
KS ci ratio: 1.293567e-01	ci left: 3.264679e-04	ci right 3.719825e-04	k: 917	n:2630000
MUC4   2630000 perm   2913 sec   (903 perm/sec)   p_kst 3.486692e-04   p_cons 9.447567e-02   p_joint 1.893536e-04

Joint ci ratio: 1.751160e-01	ci left: 1.731561e-04	ci right 2.067441e-04	k: 500	n:2640000
Cons ci ratio: 7.469130e-03	ci left: 9.412432e-02	ci right 9.483035e-02	k: 249419	n:2640000
KS ci ratio: 1.292160e-01	ci left: 3.259643e-04	ci right 3.713556e-04	k: 919	n:2640000
MUC4   2640000 perm   2933 sec   (900 perm/sec)   p_kst 3.481061e-04   p_cons 9.447689e-02   p_joint 1.893939e-04

Joint ci ratio: 1.751161e-01	ci left: 1.725027e-04	ci right 2.059640e-04	k: 500	n:2650000
Cons ci ratio: 7.455251e-03	ci left: 9.411980e-02	ci right 9.482448e-02	k: 250350	n:2650000
KS ci ratio: 1.291459e-01	ci left: 3.250994e-04	ci right 3.703438e-04	k: 920	n:2650000
MUC4   2650000 perm   2953 sec   (897 perm/sec)   p_kst 3.471698e-04   p_cons 9.447170e-02   p_joint 1.886792e-04

Joint ci ratio: 1.745941e-01	ci left: 1.729327e-04	ci right 2.063668e-04	k: 503	n:2660000
Cons ci ratio: 7.442266e-03	ci left: 9.409655e-02	ci right 9.479982e-02	k: 251231	n:2660000
KS ci ratio: 1.288664e-01	ci left: 3.253325e-04	ci right 3.705038e-04	k: 924	n:2660000
MUC4   2660000 perm   2974 sec   (894 perm/sec)   p_kst 3.473684e-04   p_cons 9.444774e-02   p_joint 1.890977e-04

Joint ci ratio: 1.742487e-01	ci left: 1.730013e-04	ci right 2.063756e-04	k: 505	n:2670000
Cons ci ratio: 7.428373e-03	ci left: 9.409591e-02	ci right 9.479786e-02	k: 252172	n:2670000
KS ci ratio: 1.287273e-01	ci left: 3.248389e-04	ci right 3.698893e-04	k: 926	n:2670000
MUC4   2670000 perm   2995 sec   (892 perm/sec)   p_kst 3.468165e-04   p_cons 9.444644e-02   p_joint 1.891386e-04

Joint ci ratio: 1.739054e-01	ci left: 1.730696e-04	ci right 2.063843e-04	k: 507	n:2680000
Cons ci ratio: 7.414153e-03	ci left: 9.410458e-02	ci right 9.480525e-02	k: 253138	n:2680000
KS ci ratio: 1.283815e-01	ci left: 3.254325e-04	ci right 3.704347e-04	k: 931	n:2680000
MUC4   2680000 perm   3015 sec   (889 perm/sec)   p_kst 3.473881e-04   p_cons 9.445448e-02   p_joint 1.891791e-04

Joint ci ratio: 1.735640e-01	ci left: 1.731374e-04	ci right 2.063929e-04	k: 509	n:2690000
Cons ci ratio: 7.400062e-03	ci left: 9.411208e-02	ci right 9.481147e-02	k: 254101	n:2690000
KS ci ratio: 1.282440e-01	ci left: 3.249424e-04	ci right 3.698250e-04	k: 933	n:2690000
MUC4   2690000 perm   3036 sec   (886 perm/sec)   p_kst 3.468401e-04   p_cons 9.446134e-02   p_joint 1.892193e-04

Joint ci ratio: 1.732247e-01	ci left: 1.732047e-04	ci right 2.064013e-04	k: 511	n:2700000
Cons ci ratio: 7.386116e-03	ci left: 9.411805e-02	ci right 9.481615e-02	k: 255060	n:2700000
KS ci ratio: 1.280386e-01	ci left: 3.248144e-04	ci right 3.696020e-04	k: 936	n:2700000
MUC4   2700000 perm   3057 sec   (883 perm/sec)   p_kst 3.466667e-04   p_cons 9.446667e-02   p_joint 1.892593e-04

Joint ci ratio: 1.728874e-01	ci left: 1.732716e-04	ci right 2.064096e-04	k: 513	n:2710000
Cons ci ratio: 7.372963e-03	ci left: 9.410740e-02	ci right 9.480417e-02	k: 255974	n:2710000
KS ci ratio: 1.274954e-01	ci left: 3.264735e-04	ci right 3.712845e-04	k: 944	n:2710000
MUC4   2710000 perm   3078 sec   (881 perm/sec)   p_kst 3.483395e-04   p_cons 9.445535e-02   p_joint 1.892989e-04

Joint ci ratio: 1.725520e-01	ci left: 1.733381e-04	ci right 2.064178e-04	k: 515	n:2720000
Cons ci ratio: 7.358995e-03	ci left: 9.411738e-02	ci right 9.481290e-02	k: 256944	n:2720000
KS ci ratio: 1.271594e-01	ci left: 3.270529e-04	ci right 3.718162e-04	k: 949	n:2720000
MUC4   2720000 perm   3099 sec   (878 perm/sec)   p_kst 3.488971e-04   p_cons 9.446471e-02   p_joint 1.893382e-04

Joint ci ratio: 1.725520e-01	ci left: 1.727032e-04	ci right 2.056617e-04	k: 515	n:2730000
Cons ci ratio: 7.345012e-03	ci left: 9.412948e-02	ci right 9.482376e-02	k: 257920	n:2730000
KS ci ratio: 1.270258e-01	ci left: 3.265642e-04	ci right 3.712101e-04	k: 951	n:2730000
MUC4   2730000 perm   3120 sec   (875 perm/sec)   p_kst 3.483516e-04   p_cons 9.447619e-02   p_joint 1.886447e-04

Joint ci ratio: 1.722186e-01	ci left: 1.727713e-04	ci right 2.056725e-04	k: 517	n:2740000
Cons ci ratio: 7.330920e-03	ci left: 9.414587e-02	ci right 9.483893e-02	k: 258908	n:2740000
KS ci ratio: 1.267597e-01	ci left: 3.267859e-04	ci right 3.713615e-04	k: 955	n:2740000
MUC4   2740000 perm   3141 sec   (872 perm/sec)   p_kst 3.485401e-04   p_cons 9.449197e-02   p_joint 1.886861e-04

Joint ci ratio: 1.718871e-01	ci left: 1.728390e-04	ci right 2.056832e-04	k: 519	n:2750000
Cons ci ratio: 7.317873e-03	ci left: 9.413963e-02	ci right 9.483141e-02	k: 259834	n:2750000
KS ci ratio: 1.264953e-01	ci left: 3.270060e-04	ci right 3.715117e-04	k: 959	n:2750000
MUC4   2750000 perm   3161 sec   (870 perm/sec)   p_kst 3.487273e-04   p_cons 9.448509e-02   p_joint 1.887273e-04

Joint ci ratio: 1.712297e-01	ci left: 1.735998e-04	ci right 2.064494e-04	k: 523	n:2760000
Cons ci ratio: 7.304339e-03	ci left: 9.414646e-02	ci right 9.483700e-02	k: 260796	n:2760000
KS ci ratio: 1.262326e-01	ci left: 3.272247e-04	ci right 3.716607e-04	k: 963	n:2760000
MUC4   2760000 perm   3183 sec   (867 perm/sec)   p_kst 3.489130e-04   p_cons 9.449130e-02   p_joint 1.894928e-04

Joint ci ratio: 1.709039e-01	ci left: 1.736642e-04	ci right 2.064570e-04	k: 525	n:2770000
Cons ci ratio: 7.291172e-03	ci left: 9.414639e-02	ci right 9.483569e-02	k: 261739	n:2770000
KS ci ratio: 1.261019e-01	ci left: 3.267426e-04	ci right 3.710638e-04	k: 965	n:2770000
MUC4   2770000 perm   3204 sec   (864 perm/sec)   p_kst 3.483755e-04   p_cons 9.449061e-02   p_joint 1.895307e-04

Joint ci ratio: 1.709039e-01	ci left: 1.730395e-04	ci right 2.057143e-04	k: 525	n:2780000
Cons ci ratio: 7.278183e-03	ci left: 9.414381e-02	ci right 9.483186e-02	k: 262675	n:2780000
KS ci ratio: 1.259066e-01	ci left: 3.266124e-04	ci right 3.708421e-04	k: 968	n:2780000
MUC4   2780000 perm   3226 sec   (862 perm/sec)   p_kst 3.482014e-04   p_cons 9.448741e-02   p_joint 1.888489e-04

Joint ci ratio: 1.704186e-01	ci left: 1.734486e-04	ci right 2.060982e-04	k: 528	n:2790000
Cons ci ratio: 7.265902e-03	ci left: 9.412622e-02	ci right 9.481297e-02	k: 263569	n:2790000
KS ci ratio: 1.256475e-01	ci left: 3.268303e-04	ci right 3.709917e-04	k: 972	n:2790000
MUC4   2790000 perm   3247 sec   (859 perm/sec)   p_kst 3.483871e-04   p_cons 9.446918e-02   p_joint 1.892473e-04

Joint ci ratio: 1.704187e-01	ci left: 1.728292e-04	ci right 2.053621e-04	k: 528	n:2800000
Cons ci ratio: 7.252654e-03	ci left: 9.413301e-02	ci right 9.481855e-02	k: 264531	n:2800000
KS ci ratio: 1.253259e-01	ci left: 3.273928e-04	ci right 3.715085e-04	k: 977	n:2800000
MUC4   2800000 perm   3269 sec   (857 perm/sec)   p_kst 3.489286e-04   p_cons 9.447536e-02   p_joint 1.885714e-04

Joint ci ratio: 1.699374e-01	ci left: 1.732363e-04	ci right 2.057443e-04	k: 531	n:2810000
Cons ci ratio: 7.240170e-03	ci left: 9.412340e-02	ci right 9.480769e-02	k: 265447	n:2810000
KS ci ratio: 1.249431e-01	ci left: 3.282961e-04	ci right 3.723884e-04	k: 983	n:2810000
MUC4   2810000 perm   3291 sec   (854 perm/sec)   p_kst 3.498221e-04   p_cons 9.446512e-02   p_joint 1.889680e-04

Joint ci ratio: 1.696189e-01	ci left: 1.733010e-04	ci right 2.057541e-04	k: 533	n:2820000
Cons ci ratio: 7.227961e-03	ci left: 9.410890e-02	ci right 9.479193e-02	k: 266349	n:2820000
KS ci ratio: 1.248164e-01	ci left: 3.278189e-04	ci right 3.717993e-04	k: 985	n:2820000
MUC4   2820000 perm   3313 sec   (851 perm/sec)   p_kst 3.492908e-04   p_cons 9.445000e-02   p_joint 1.890071e-04

Joint ci ratio: 1.691444e-01	ci left: 1.737038e-04	ci right 2.061320e-04	k: 536	n:2830000
Cons ci ratio: 7.215559e-03	ci left: 9.410051e-02	ci right 9.478230e-02	k: 267268	n:2830000
KS ci ratio: 1.245640e-01	ci left: 3.280299e-04	ci right 3.719430e-04	k: 989	n:2830000
MUC4   2830000 perm   3334 sec   (849 perm/sec)   p_kst 3.494700e-04   p_cons 9.444099e-02   p_joint 1.893993e-04

Joint ci ratio: 1.691445e-01	ci left: 1.730922e-04	ci right 2.054062e-04	k: 536	n:2840000
Cons ci ratio: 7.202895e-03	ci left: 9.409991e-02	ci right 9.478049e-02	k: 268209	n:2840000
KS ci ratio: 1.245012e-01	ci left: 3.272160e-04	ci right 3.709964e-04	k: 990	n:2840000
MUC4   2840000 perm   3356 sec   (846 perm/sec)   p_kst 3.485915e-04   p_cons 9.443979e-02   p_joint 1.887324e-04

Joint ci ratio: 1.686739e-01	ci left: 1.734930e-04	ci right 2.057825e-04	k: 539	n:2850000
Cons ci ratio: 7.190018e-03	ci left: 9.410597e-02	ci right 9.478538e-02	k: 269169	n:2850000
KS ci ratio: 1.241259e-01	ci left: 3.281077e-04	ci right 3.718653e-04	k: 996	n:2850000
MUC4   2850000 perm   3378 sec   (844 perm/sec)   p_kst 3.494737e-04   p_cons 9.444526e-02   p_joint 1.891228e-04

Joint ci ratio: 1.683624e-01	ci left: 1.735562e-04	ci right 2.057918e-04	k: 541	n:2860000
Cons ci ratio: 7.176812e-03	ci left: 9.412142e-02	ci right 9.479968e-02	k: 270156	n:2860000
KS ci ratio: 1.238158e-01	ci left: 3.286545e-04	ci right 3.723675e-04	k: 1001	n:2860000
MUC4   2860000 perm   3400 sec   (841 perm/sec)   p_kst 3.500000e-04   p_cons 9.446014e-02   p_joint 1.891608e-04

Joint ci ratio: 1.678984e-01	ci left: 1.739527e-04	ci right 2.061640e-04	k: 544	n:2870000
Cons ci ratio: 7.164687e-03	ci left: 9.411276e-02	ci right 9.478980e-02	k: 271074	n:2870000
KS ci ratio: 1.235694e-01	ci left: 3.288600e-04	ci right 3.725069e-04	k: 1005	n:2870000
MUC4   2870000 perm   3423 sec   (839 perm/sec)   p_kst 3.501742e-04   p_cons 9.445087e-02   p_joint 1.895470e-04

Joint ci ratio: 1.677446e-01	ci left: 1.736814e-04	ci right 2.058099e-04	k: 545	n:2880000
Cons ci ratio: 7.152898e-03	ci left: 9.409757e-02	ci right 9.477339e-02	k: 271973	n:2880000
KS ci ratio: 1.232025e-01	ci left: 3.297371e-04	ci right 3.733611e-04	k: 1011	n:2880000
MUC4   2880000 perm   3445 sec   (836 perm/sec)   p_kst 3.510417e-04   p_cons 9.443507e-02   p_joint 1.892361e-04

Joint ci ratio: 1.675912e-01	ci left: 1.734119e-04	ci right 2.054583e-04	k: 546	n:2890000
Cons ci ratio: 7.140604e-03	ci left: 9.409596e-02	ci right 9.477060e-02	k: 272911	n:2890000
KS ci ratio: 1.228992e-01	ci left: 3.302730e-04	ci right 3.738525e-04	k: 1016	n:2890000
MUC4   2890000 perm   3467 sec   (834 perm/sec)   p_kst 3.515571e-04   p_cons 9.443287e-02   p_joint 1.889273e-04

Joint ci ratio: 1.672857e-01	ci left: 1.734747e-04	ci right 2.054683e-04	k: 548	n:2900000
Cons ci ratio: 7.128746e-03	ci left: 9.408541e-02	ci right 9.475885e-02	k: 273823	n:2900000
KS ci ratio: 1.226582e-01	ci left: 3.304711e-04	ci right 3.739850e-04	k: 1020	n:2900000
MUC4   2900000 perm   3489 sec   (831 perm/sec)   p_kst 3.517241e-04   p_cons 9.442172e-02   p_joint 1.889655e-04

Joint ci ratio: 1.669818e-01	ci left: 1.735371e-04	ci right 2.054783e-04	k: 550	n:2910000
Cons ci ratio: 7.116719e-03	ci left: 9.408042e-02	ci right 9.475269e-02	k: 274751	n:2910000
KS ci ratio: 1.224784e-01	ci left: 3.303348e-04	ci right 3.737624e-04	k: 1023	n:2910000
MUC4   2910000 perm   3511 sec   (829 perm/sec)   p_kst 3.515464e-04   p_cons 9.441615e-02   p_joint 1.890034e-04

Joint ci ratio: 1.666795e-01	ci left: 1.735991e-04	ci right 2.054881e-04	k: 552	n:2920000
Cons ci ratio: 7.104226e-03	ci left: 9.408812e-02	ci right 9.475926e-02	k: 275716	n:2920000
KS ci ratio: 1.222994e-01	ci left: 3.301995e-04	ci right 3.735412e-04	k: 1026	n:2920000
MUC4   2920000 perm   3533 sec   (826 perm/sec)   p_kst 3.513699e-04   p_cons 9.442329e-02   p_joint 1.890411e-04

Joint ci ratio: 1.665291e-01	ci left: 1.733337e-04	ci right 2.051423e-04	k: 553	n:2930000
Cons ci ratio: 7.092336e-03	ci left: 9.408282e-02	ci right 9.475279e-02	k: 276643	n:2930000
KS ci ratio: 1.221212e-01	ci left: 3.300651e-04	ci right 3.733215e-04	k: 1029	n:2930000
MUC4   2930000 perm   3555 sec   (824 perm/sec)   p_kst 3.511945e-04   p_cons 9.441741e-02   p_joint 1.887372e-04

Joint ci ratio: 1.663790e-01	ci left: 1.730701e-04	ci right 2.047988e-04	k: 554	n:2940000
Cons ci ratio: 7.080281e-03	ci left: 9.408299e-02	ci right 9.475182e-02	k: 277586	n:2940000
KS ci ratio: 1.218847e-01	ci left: 3.302614e-04	ci right 3.734537e-04	k: 1033	n:2940000
MUC4   2940000 perm   3578 sec   (822 perm/sec)   p_kst 3.513605e-04   p_cons 9.441701e-02   p_joint 1.884354e-04

Joint ci ratio: 1.657826e-01	ci left: 1.737830e-04	ci right 2.055168e-04	k: 558	n:2950000
Cons ci ratio: 7.068063e-03	ci left: 9.408858e-02	ci right 9.475629e-02	k: 278545	n:2950000
KS ci ratio: 1.215911e-01	ci left: 3.307852e-04	ci right 3.739343e-04	k: 1038	n:2950000
MUC4   2950000 perm   3600 sec   (819 perm/sec)   p_kst 3.518644e-04   p_cons 9.442203e-02   p_joint 1.891525e-04

Joint ci ratio: 1.656345e-01	ci left: 1.735197e-04	ci right 2.051743e-04	k: 559	n:2960000
Cons ci ratio: 7.056311e-03	ci left: 9.408434e-02	ci right 9.475091e-02	k: 279475	n:2960000
KS ci ratio: 1.214743e-01	ci left: 3.303228e-04	ci right 3.733672e-04	k: 1040	n:2960000
MUC4   2960000 perm   3623 sec   (817 perm/sec)   p_kst 3.513514e-04   p_cons 9.441723e-02   p_joint 1.888514e-04

Joint ci ratio: 1.656346e-01	ci left: 1.729355e-04	ci right 2.044835e-04	k: 559	n:2970000
Cons ci ratio: 7.044244e-03	ci left: 9.408922e-02	ci right 9.475467e-02	k: 280432	n:2970000
KS ci ratio: 1.212415e-01	ci left: 3.305166e-04	ci right 3.734977e-04	k: 1044	n:2970000
MUC4   2970000 perm   3646 sec   (815 perm/sec)   p_kst 3.515152e-04   p_cons 9.442155e-02   p_joint 1.882155e-04

Joint ci ratio: 1.651927e-01	ci left: 1.733202e-04	ci right 2.048457e-04	k: 562	n:2980000
Cons ci ratio: 7.032432e-03	ci left: 9.408937e-02	ci right 9.475370e-02	k: 281375	n:2980000
KS ci ratio: 1.210101e-01	ci left: 3.307091e-04	ci right 3.736273e-04	k: 1048	n:2980000
MUC4   2980000 perm   3669 sec   (812 perm/sec)   p_kst 3.516779e-04   p_cons 9.442114e-02   p_joint 1.885906e-04

Joint ci ratio: 1.650462e-01	ci left: 1.730612e-04	ci right 2.045088e-04	k: 563	n:2990000
Cons ci ratio: 7.021269e-03	ci left: 9.407516e-02	ci right 9.473834e-02	k: 282275	n:2990000
KS ci ratio: 1.207801e-01	ci left: 3.309003e-04	ci right 3.737560e-04	k: 1052	n:2990000
MUC4   2990000 perm   3692 sec   (810 perm/sec)   p_kst 3.518395e-04   p_cons 9.440635e-02   p_joint 1.882943e-04

Joint ci ratio: 1.647543e-01	ci left: 1.731234e-04	ci right 2.045213e-04	k: 565	n:3000000
Cons ci ratio: 7.009941e-03	ci left: 9.406637e-02	ci right 9.472841e-02	k: 283191	n:3000000
KS ci ratio: 1.204943e-01	ci left: 3.314137e-04	ci right 3.742270e-04	k: 1057	n:3000000
MUC4   3000000 perm   3715 sec   (807 perm/sec)   p_kst 3.523333e-04   p_cons 9.439700e-02   p_joint 1.883333e-04

Joint ci ratio: 1.646090e-01	ci left: 1.728668e-04	ci right 2.041877e-04	k: 566	n:3010000
Cons ci ratio: 6.998423e-03	ci left: 9.406361e-02	ci right 9.472454e-02	k: 284125	n:3010000
KS ci ratio: 1.203239e-01	ci left: 3.312793e-04	ci right 3.740104e-04	k: 1060	n:3010000
MUC4   3010000 perm   3739 sec   (805 perm/sec)   p_kst 3.521595e-04   p_cons 9.439369e-02   p_joint 1.880399e-04

Joint ci ratio: 1.643194e-01	ci left: 1.729294e-04	ci right 2.042011e-04	k: 568	n:3020000
Cons ci ratio: 6.986771e-03	ci left: 9.406550e-02	ci right 9.472534e-02	k: 285073	n:3020000
KS ci ratio: 1.202106e-01	ci left: 3.308247e-04	ci right 3.734542e-04	k: 1062	n:3020000
MUC4   3020000 perm   3762 sec   (803 perm/sec)   p_kst 3.516556e-04   p_cons 9.439503e-02   p_joint 1.880795e-04

Joint ci ratio: 1.640314e-01	ci left: 1.729916e-04	ci right 2.042143e-04	k: 570	n:3030000
Cons ci ratio: 6.974545e-03	ci left: 9.408287e-02	ci right 9.474167e-02	k: 286068	n:3030000
KS ci ratio: 1.199851e-01	ci left: 3.310134e-04	ci right 3.735814e-04	k: 1066	n:3030000
MUC4   3030000 perm   3785 sec   (800 perm/sec)   p_kst 3.518152e-04   p_cons 9.441188e-02   p_joint 1.881188e-04

Joint ci ratio: 1.638880e-01	ci left: 1.727380e-04	ci right 2.038850e-04	k: 571	n:3040000
Cons ci ratio: 6.962959e-03	ci left: 9.408600e-02	ci right 9.474372e-02	k: 287020	n:3040000
KS ci ratio: 1.197608e-01	ci left: 3.312008e-04	ci right 3.737077e-04	k: 1070	n:3040000
MUC4   3040000 perm   3808 sec   (798 perm/sec)   p_kst 3.519737e-04   p_cons 9.441447e-02   p_joint 1.878289e-04

Joint ci ratio: 1.637449e-01	ci left: 1.724861e-04	ci right 2.035578e-04	k: 572	n:3050000
Cons ci ratio: 6.951683e-03	ci left: 9.408289e-02	ci right 9.473952e-02	k: 287953	n:3050000
KS ci ratio: 1.197050e-01	ci left: 3.304330e-04	ci right 3.728202e-04	k: 1071	n:3050000
MUC4   3050000 perm   3832 sec   (796 perm/sec)   p_kst 3.511475e-04   p_cons 9.441082e-02   p_joint 1.875410e-04

Joint ci ratio: 1.631763e-01	ci left: 1.731761e-04	ci right 2.042532e-04	k: 576	n:3060000
Cons ci ratio: 6.940476e-03	ci left: 9.407947e-02	ci right 9.473502e-02	k: 288885	n:3060000
KS ci ratio: 1.193713e-01	ci left: 3.312553e-04	ci right 3.736212e-04	k: 1077	n:3060000
MUC4   3060000 perm   3855 sec   (794 perm/sec)   p_kst 3.519608e-04   p_cons 9.440686e-02   p_joint 1.882353e-04

Joint ci ratio: 1.626136e-01	ci left: 1.738619e-04	ci right 2.049439e-04	k: 580	n:3070000
Cons ci ratio: 6.929296e-03	ci left: 9.407673e-02	ci right 9.473120e-02	k: 289819	n:3070000
KS ci ratio: 1.192056e-01	ci left: 3.311243e-04	ci right 3.734105e-04	k: 1080	n:3070000
MUC4   3070000 perm   3879 sec   (792 perm/sec)   p_kst 3.517915e-04   p_cons 9.440358e-02   p_joint 1.889251e-04

Joint ci ratio: 1.621953e-01	ci left: 1.742318e-04	ci right 2.052921e-04	k: 583	n:3080000
Cons ci ratio: 6.918104e-03	ci left: 9.407563e-02	ci right 9.472903e-02	k: 290758	n:3080000
KS ci ratio: 1.190405e-01	ci left: 3.309942e-04	ci right 3.732012e-04	k: 1083	n:3080000
MUC4   3080000 perm   3903 sec   (789 perm/sec)   p_kst 3.516234e-04   p_cons 9.440195e-02   p_joint 1.892857e-04

Joint ci ratio: 1.619183e-01	ci left: 1.742890e-04	ci right 2.053012e-04	k: 585	n:3090000
Cons ci ratio: 6.906509e-03	ci left: 9.408585e-02	ci right 9.473821e-02	k: 291732	n:3090000
KS ci ratio: 1.189309e-01	ci left: 3.305510e-04	ci right 3.726599e-04	k: 1085	n:3090000
MUC4   3090000 perm   3926 sec   (787 perm/sec)   p_kst 3.511327e-04   p_cons 9.441165e-02   p_joint 1.893204e-04

Joint ci ratio: 1.617804e-01	ci left: 1.740363e-04	ci right 2.049745e-04	k: 586	n:3100000
Cons ci ratio: 6.895310e-03	ci left: 9.408762e-02	ci right 9.473894e-02	k: 292680	n:3100000
KS ci ratio: 1.187125e-01	ci left: 3.307367e-04	ci right 3.727864e-04	k: 1089	n:3100000
MUC4   3100000 perm   3950 sec   (785 perm/sec)   p_kst 3.512903e-04   p_cons 9.441290e-02   p_joint 1.890323e-04

Joint ci ratio: 1.613685e-01	ci left: 1.744023e-04	ci right 2.053190e-04	k: 589	n:3110000
Cons ci ratio: 6.883764e-03	ci left: 9.409934e-02	ci right 9.474965e-02	k: 293659	n:3110000
KS ci ratio: 1.186037e-01	ci left: 3.302973e-04	ci right 3.722499e-04	k: 1091	n:3110000
MUC4   3110000 perm   3974 sec   (783 perm/sec)   p_kst 3.508039e-04   p_cons 9.442412e-02   p_joint 1.893891e-04

Joint ci ratio: 1.612320e-01	ci left: 1.741509e-04	ci right 2.049944e-04	k: 590	n:3120000
Cons ci ratio: 6.872752e-03	ci left: 9.409914e-02	ci right 9.474840e-02	k: 294601	n:3120000
KS ci ratio: 1.184412e-01	ci left: 3.301716e-04	ci right 3.720469e-04	k: 1094	n:3120000
MUC4   3120000 perm   3998 sec   (780 perm/sec)   p_kst 3.506410e-04   p_cons 9.442340e-02   p_joint 1.891026e-04

Joint ci ratio: 1.605541e-01	ci left: 1.751276e-04	ci right 2.060012e-04	k: 595	n:3130000
Cons ci ratio: 6.861665e-03	ci left: 9.410214e-02	ci right 9.475037e-02	k: 295553	n:3130000
KS ci ratio: 1.181717e-01	ci left: 3.306670e-04	ci right 3.725029e-04	k: 1099	n:3130000
MUC4   3130000 perm   4022 sec   (778 perm/sec)   p_kst 3.511182e-04   p_cons 9.442588e-02   p_joint 1.900958e-04

Joint ci ratio: 1.602854e-01	ci left: 1.751813e-04	ci right 2.060076e-04	k: 597	n:3140000
Cons ci ratio: 6.850976e-03	ci left: 9.409653e-02	ci right 9.474371e-02	k: 296478	n:3140000
KS ci ratio: 1.179040e-01	ci left: 3.311592e-04	ci right 3.729559e-04	k: 1104	n:3140000
MUC4   3140000 perm   4046 sec   (776 perm/sec)   p_kst 3.515924e-04   p_cons 9.441975e-02   p_joint 1.901274e-04

Joint ci ratio: 1.601516e-01	ci left: 1.749299e-04	ci right 2.056838e-04	k: 598	n:3150000
Cons ci ratio: 6.839956e-03	ci left: 9.410047e-02	ci right 9.474663e-02	k: 297433	n:3150000
KS ci ratio: 1.177443e-01	ci left: 3.310322e-04	ci right 3.727524e-04	k: 1107	n:3150000
MUC4   3150000 perm   4070 sec   (774 perm/sec)   p_kst 3.514286e-04   p_cons 9.442317e-02   p_joint 1.898413e-04

Joint ci ratio: 1.598849e-01	ci left: 1.749839e-04	ci right 2.056911e-04	k: 600	n:3160000
Cons ci ratio: 6.829658e-03	ci left: 9.408764e-02	ci right 9.473273e-02	k: 298335	n:3160000
KS ci ratio: 1.175323e-01	ci left: 3.312133e-04	ci right 3.728758e-04	k: 1111	n:3160000
MUC4   3160000 perm   4094 sec   (772 perm/sec)   p_kst 3.515823e-04   p_cons 9.440981e-02   p_joint 1.898734e-04

Joint ci ratio: 1.596195e-01	ci left: 1.750375e-04	ci right 2.056984e-04	k: 602	n:3170000
Cons ci ratio: 6.819319e-03	ci left: 9.407709e-02	ci right 9.472113e-02	k: 299244	n:3170000
KS ci ratio: 1.174268e-01	ci left: 3.307808e-04	ci right 3.723490e-04	k: 1113	n:3170000
MUC4   3170000 perm   4118 sec   (770 perm/sec)   p_kst 3.511041e-04   p_cons 9.439874e-02   p_joint 1.899054e-04

Joint ci ratio: 1.592239e-01	ci left: 1.753929e-04	ci right 2.060325e-04	k: 605	n:3180000
Cons ci ratio: 6.807975e-03	ci left: 9.409298e-02	ci right 9.473606e-02	k: 300237	n:3180000
KS ci ratio: 1.172165e-01	ci left: 3.309615e-04	ci right 3.724729e-04	k: 1117	n:3180000
MUC4   3180000 perm   4143 sec   (768 perm/sec)   p_kst 3.512579e-04   p_cons 9.441415e-02   p_joint 1.902516e-04

Joint ci ratio: 1.585710e-01	ci left: 1.763481e-04	ci right 2.070163e-04	k: 610	n:3190000
Cons ci ratio: 6.797048e-03	ci left: 9.409970e-02	ci right 9.474179e-02	k: 301201	n:3190000
KS ci ratio: 1.169552e-01	ci left: 3.314455e-04	ci right 3.729185e-04	k: 1122	n:3190000
MUC4   3190000 perm   4167 sec   (765 perm/sec)   p_kst 3.517241e-04   p_cons 9.442038e-02   p_joint 1.912226e-04

Joint ci ratio: 1.584414e-01	ci left: 1.760972e-04	ci right 2.066943e-04	k: 611	n:3200000
Cons ci ratio: 6.786236e-03	ci left: 9.410482e-02	ci right 9.474591e-02	k: 302160	n:3200000
KS ci ratio: 1.169032e-01	ci left: 3.307131e-04	ci right 3.720748e-04	k: 1123	n:3200000
MUC4   3200000 perm   4191 sec   (763 perm/sec)   p_kst 3.509375e-04   p_cons 9.442500e-02   p_joint 1.909375e-04

Joint ci ratio: 1.581832e-01	ci left: 1.761469e-04	ci right 2.066981e-04	k: 613	n:3210000
Cons ci ratio: 6.776166e-03	ci left: 9.409249e-02	ci right 9.473254e-02	k: 303063	n:3210000
KS ci ratio: 1.165408e-01	ci left: 3.317999e-04	ci right 3.731600e-04	k: 1130	n:3210000
MUC4   3210000 perm   4216 sec   (761 perm/sec)   p_kst 3.520249e-04   p_cons 9.441215e-02   p_joint 1.909657e-04

Joint ci ratio: 1.577981e-01	ci left: 1.764947e-04	ci right 2.070247e-04	k: 616	n:3220000
Cons ci ratio: 6.766068e-03	ci left: 9.408209e-02	ci right 9.472112e-02	k: 303972	n:3220000
KS ci ratio: 1.163353e-01	ci left: 3.319755e-04	ci right 3.732795e-04	k: 1134	n:3220000
MUC4   3220000 perm   4240 sec   (759 perm/sec)   p_kst 3.521739e-04   p_cons 9.440124e-02   p_joint 1.913043e-04

Joint ci ratio: 1.576704e-01	ci left: 1.762457e-04	ci right 2.067055e-04	k: 617	n:3230000
Cons ci ratio: 6.755635e-03	ci left: 9.408135e-02	ci right 9.471938e-02	k: 304912	n:3230000
KS ci ratio: 1.161819e-01	ci left: 3.318495e-04	ci right 3.730796e-04	k: 1137	n:3230000
MUC4   3230000 perm   4265 sec   (757 perm/sec)   p_kst 3.520124e-04   p_cons 9.440000e-02   p_joint 1.910217e-04

Joint ci ratio: 1.574159e-01	ci left: 1.762947e-04	ci right 2.067091e-04	k: 619	n:3240000
Cons ci ratio: 6.745177e-03	ci left: 9.408246e-02	ci right 9.471950e-02	k: 305858	n:3240000
KS ci ratio: 1.160290e-01	ci left: 3.317243e-04	ci right 3.728810e-04	k: 1140	n:3240000
MUC4   3240000 perm   4290 sec   (755 perm/sec)   p_kst 3.518519e-04   p_cons 9.440062e-02   p_joint 1.910494e-04

Joint ci ratio: 1.572891e-01	ci left: 1.760478e-04	ci right 2.063929e-04	k: 620	n:3250000
Cons ci ratio: 6.734792e-03	ci left: 9.408294e-02	ci right 9.471901e-02	k: 306802	n:3250000
KS ci ratio: 1.158768e-01	ci left: 3.315999e-04	ci right 3.726835e-04	k: 1143	n:3250000
MUC4   3250000 perm   4315 sec   (753 perm/sec)   p_kst 3.516923e-04   p_cons 9.440062e-02   p_joint 1.907692e-04

Joint ci ratio: 1.566596e-01	ci left: 1.769813e-04	ci right 2.073537e-04	k: 625	n:3260000
Cons ci ratio: 6.724081e-03	ci left: 9.409292e-02	ci right 9.472804e-02	k: 307777	n:3260000
KS ci ratio: 1.155239e-01	ci left: 3.326679e-04	ci right 3.737496e-04	k: 1150	n:3260000
MUC4   3260000 perm   4339 sec   (751 perm/sec)   p_kst 3.527607e-04   p_cons 9.441012e-02   p_joint 1.917178e-04

Joint ci ratio: 1.564100e-01	ci left: 1.770277e-04	ci right 2.073552e-04	k: 627	n:3270000
Cons ci ratio: 6.713769e-03	ci left: 9.409399e-02	ci right 9.472814e-02	k: 308723	n:3270000
KS ci ratio: 1.152737e-01	ci left: 3.331355e-04	ci right 3.741798e-04	k: 1155	n:3270000
MUC4   3270000 perm   4364 sec   (749 perm/sec)   p_kst 3.532110e-04   p_cons 9.441070e-02   p_joint 1.917431e-04

Joint ci ratio: 1.557910e-01	ci left: 1.779529e-04	ci right 2.083069e-04	k: 632	n:3280000
Cons ci ratio: 6.703504e-03	ci left: 9.409505e-02	ci right 9.472823e-02	k: 309669	n:3280000
KS ci ratio: 1.149757e-01	ci left: 3.338964e-04	ci right 3.749209e-04	k: 1161	n:3280000
MUC4   3280000 perm   4389 sec   (747 perm/sec)   p_kst 3.539634e-04   p_cons 9.441128e-02   p_joint 1.926829e-04

Joint ci ratio: 1.553010e-01	ci left: 1.785805e-04	ci right 2.089368e-04	k: 636	n:3290000
Cons ci ratio: 6.693262e-03	ci left: 9.409671e-02	ci right 9.472893e-02	k: 310617	n:3290000
KS ci ratio: 1.146799e-01	ci left: 3.346529e-04	ci right 3.756574e-04	k: 1167	n:3290000
MUC4   3290000 perm   4414 sec   (745 perm/sec)   p_kst 3.547112e-04   p_cons 9.441246e-02   p_joint 1.933131e-04

Joint ci ratio: 1.553010e-01	ci left: 1.780393e-04	ci right 2.083037e-04	k: 636	n:3300000
Cons ci ratio: 6.683352e-03	ci left: 9.409110e-02	ci right 9.472234e-02	k: 311541	n:3300000
KS ci ratio: 1.146309e-01	ci left: 3.339331e-04	ci right 3.748308e-04	k: 1168	n:3300000
MUC4   3300000 perm   4439 sec   (743 perm/sec)   p_kst 3.539394e-04   p_cons 9.440636e-02   p_joint 1.927273e-04

Joint ci ratio: 1.548157e-01	ci left: 1.786630e-04	ci right 2.089297e-04	k: 640	n:3310000
Cons ci ratio: 6.673497e-03	ci left: 9.408522e-02	ci right 9.471549e-02	k: 312464	n:3310000
KS ci ratio: 1.142892e-01	ci left: 3.349785e-04	ci right 3.758737e-04	k: 1175	n:3310000
MUC4   3310000 perm   4465 sec   (741 perm/sec)   p_kst 3.549849e-04   p_cons 9.440000e-02   p_joint 1.933535e-04

Joint ci ratio: 1.542153e-01	ci left: 1.795727e-04	ci right 2.098646e-04	k: 645	n:3320000
Cons ci ratio: 6.663486e-03	ci left: 9.408449e-02	ci right 9.471381e-02	k: 313404	n:3320000
KS ci ratio: 1.140953e-01	ci left: 3.351399e-04	ci right 3.759807e-04	k: 1179	n:3320000
MUC4   3320000 perm   4490 sec   (739 perm/sec)   p_kst 3.551205e-04   p_cons 9.439880e-02   p_joint 1.942771e-04

Joint ci ratio: 1.540961e-01	ci left: 1.793221e-04	ci right 2.095462e-04	k: 646	n:3330000
Cons ci ratio: 6.653882e-03	ci left: 9.407447e-02	ci right 9.470281e-02	k: 314313	n:3330000
KS ci ratio: 1.139024e-01	ci left: 3.353005e-04	ci right 3.760871e-04	k: 1183	n:3330000
MUC4   3330000 perm   4515 sec   (737 perm/sec)   p_kst 3.552553e-04   p_cons 9.438829e-02   p_joint 1.939940e-04

Joint ci ratio: 1.538585e-01	ci left: 1.793609e-04	ci right 2.095407e-04	k: 648	n:3340000
Cons ci ratio: 6.644401e-03	ci left: 9.406242e-02	ci right 9.468978e-02	k: 315215	n:3340000
KS ci ratio: 1.137584e-01	ci left: 3.351692e-04	ci right 3.758849e-04	k: 1186	n:3340000
MUC4   3340000 perm   4541 sec   (736 perm/sec)   p_kst 3.550898e-04   p_cons 9.437575e-02   p_joint 1.940120e-04

Joint ci ratio: 1.535041e-01	ci left: 1.796866e-04	ci right 2.098451e-04	k: 651	n:3350000
Cons ci ratio: 6.634300e-03	ci left: 9.406743e-02	ci right 9.469387e-02	k: 316174	n:3350000
KS ci ratio: 1.136149e-01	ci left: 3.350388e-04	ci right 3.756838e-04	k: 1189	n:3350000
MUC4   3350000 perm   4566 sec   (734 perm/sec)   p_kst 3.549254e-04   p_cons 9.438030e-02   p_joint 1.943284e-04

Joint ci ratio: 1.531521e-01	ci left: 1.800105e-04	ci right 2.101477e-04	k: 654	n:3360000
Cons ci ratio: 6.624591e-03	ci left: 9.406350e-02	ci right 9.468899e-02	k: 317103	n:3360000
KS ci ratio: 1.133295e-01	ci left: 3.357767e-04	ci right 3.764021e-04	k: 1195	n:3360000
MUC4   3360000 perm   4592 sec   (732 perm/sec)   p_kst 3.556548e-04   p_cons 9.437589e-02   p_joint 1.946429e-04

Joint ci ratio: 1.529188e-01	ci left: 1.800470e-04	ci right 2.101403e-04	k: 656	n:3370000
Cons ci ratio: 6.615062e-03	ci left: 9.405603e-02	ci right 9.468057e-02	k: 318020	n:3370000
KS ci ratio: 1.131405e-01	ci left: 3.359336e-04	ci right 3.765057e-04	k: 1199	n:3370000
MUC4   3370000 perm   4617 sec   (730 perm/sec)   p_kst 3.557864e-04   p_cons 9.436795e-02   p_joint 1.946588e-04

Joint ci ratio: 1.528026e-01	ci left: 1.797989e-04	ci right 2.098257e-04	k: 657	n:3380000
Cons ci ratio: 6.604626e-03	ci left: 9.407313e-02	ci right 9.469679e-02	k: 319020	n:3380000
KS ci ratio: 1.130934e-01	ci left: 3.352272e-04	ci right 3.756960e-04	k: 1200	n:3380000
MUC4   3380000 perm   4643 sec   (728 perm/sec)   p_kst 3.550296e-04   p_cons 9.438462e-02   p_joint 1.943787e-04

Joint ci ratio: 1.522253e-01	ci left: 1.806872e-04	ci right 2.107379e-04	k: 662	n:3390000
Cons ci ratio: 6.595114e-03	ci left: 9.406745e-02	ci right 9.469017e-02	k: 319943	n:3390000
KS ci ratio: 1.126719e-01	ci left: 3.368183e-04	ci right 3.773175e-04	k: 1209	n:3390000
MUC4   3390000 perm   4669 sec   (726 perm/sec)   p_kst 3.566372e-04   p_cons 9.437847e-02   p_joint 1.952802e-04

Joint ci ratio: 1.517681e-01	ci left: 1.812875e-04	ci right 2.113393e-04	k: 666	n:3400000
Cons ci ratio: 6.585485e-03	ci left: 9.406592e-02	ci right 9.468772e-02	k: 320880	n:3400000
KS ci ratio: 1.124398e-01	ci left: 3.372568e-04	ci right 3.777197e-04	k: 1214	n:3400000
MUC4   3400000 perm   4695 sec   (724 perm/sec)   p_kst 3.570588e-04   p_cons 9.437647e-02   p_joint 1.958824e-04

Joint ci ratio: 1.517681e-01	ci left: 1.807558e-04	ci right 2.107195e-04	k: 666	n:3410000
Cons ci ratio: 6.576192e-03	ci left: 9.405678e-02	ci right 9.467764e-02	k: 321791	n:3410000
KS ci ratio: 1.122552e-01	ci left: 3.374079e-04	ci right 3.778180e-04	k: 1218	n:3410000
MUC4   3410000 perm   4721 sec   (722 perm/sec)   p_kst 3.571848e-04   p_cons 9.436686e-02   p_joint 1.953079e-04

Joint ci ratio: 1.515411e-01	ci left: 1.807899e-04	ci right 2.107103e-04	k: 668	n:3420000
Cons ci ratio: 6.566780e-03	ci left: 9.405178e-02	ci right 9.467171e-02	k: 322716	n:3420000
KS ci ratio: 1.122092e-01	ci left: 3.367055e-04	ci right 3.770139e-04	k: 1219	n:3420000
MUC4   3420000 perm   4747 sec   (720 perm/sec)   p_kst 3.564327e-04   p_cons 9.436140e-02   p_joint 1.953216e-04

Joint ci ratio: 1.515412e-01	ci left: 1.802628e-04	ci right 2.100960e-04	k: 668	n:3430000
Cons ci ratio: 6.557118e-03	ci left: 9.405438e-02	ci right 9.467342e-02	k: 323667	n:3430000
KS ci ratio: 1.121174e-01	ci left: 3.362905e-04	ci right 3.765142e-04	k: 1221	n:3430000
MUC4   3430000 perm   4773 sec   (719 perm/sec)   p_kst 3.559767e-04   p_cons 9.436356e-02   p_joint 1.947522e-04

Joint ci ratio: 1.513151e-01	ci left: 1.802982e-04	ci right 2.100887e-04	k: 670	n:3440000
Cons ci ratio: 6.547654e-03	ci left: 9.405291e-02	ci right 9.467103e-02	k: 324604	n:3440000
KS ci ratio: 1.119343e-01	ci left: 3.364432e-04	ci right 3.766150e-04	k: 1225	n:3440000
MUC4   3440000 perm   4799 sec   (717 perm/sec)   p_kst 3.561047e-04   p_cons 9.436163e-02   p_joint 1.947674e-04

Joint ci ratio: 1.510901e-01	ci left: 1.803333e-04	ci right 2.100814e-04	k: 672	n:3450000
Cons ci ratio: 6.538187e-03	ci left: 9.405260e-02	ci right 9.466982e-02	k: 325545	n:3450000
KS ci ratio: 1.118888e-01	ci left: 3.357497e-04	ci right 3.758213e-04	k: 1226	n:3450000
MUC4   3450000 perm   4826 sec   (715 perm/sec)   p_kst 3.553623e-04   p_cons 9.436087e-02   p_joint 1.947826e-04

Joint ci ratio: 1.510902e-01	ci left: 1.798121e-04	ci right 2.094742e-04	k: 672	n:3460000
Cons ci ratio: 6.528794e-03	ci left: 9.405142e-02	ci right 9.466775e-02	k: 326483	n:3460000
KS ci ratio: 1.118432e-01	ci left: 3.350603e-04	ci right 3.750323e-04	k: 1227	n:3460000
MUC4   3460000 perm   4852 sec   (713 perm/sec)   p_kst 3.546243e-04   p_cons 9.435925e-02   p_joint 1.942197e-04

Joint ci ratio: 1.509781e-01	ci left: 1.795712e-04	ci right 2.091696e-04	k: 673	n:3470000
Cons ci ratio: 6.519046e-03	ci left: 9.406062e-02	ci right 9.467608e-02	k: 327457	n:3470000
KS ci ratio: 1.117069e-01	ci left: 3.349350e-04	ci right 3.748402e-04	k: 1230	n:3470000
MUC4   3470000 perm   4879 sec   (711 perm/sec)   p_kst 3.544669e-04   p_cons 9.436801e-02   p_joint 1.939481e-04

Joint ci ratio: 1.508662e-01	ci left: 1.793317e-04	ci right 2.088667e-04	k: 674	n:3480000
Cons ci ratio: 6.508848e-03	ci left: 9.408267e-02	ci right 9.469732e-02	k: 328476	n:3480000
KS ci ratio: 1.115258e-01	ci left: 3.350899e-04	ci right 3.749446e-04	k: 1234	n:3480000
MUC4   3480000 perm   4905 sec   (709 perm/sec)   p_kst 3.545977e-04   p_cons 9.438966e-02   p_joint 1.936782e-04

Joint ci ratio: 1.504211e-01	ci left: 1.799208e-04	ci right 2.094576e-04	k: 678	n:3490000
Cons ci ratio: 6.500039e-03	ci left: 9.406941e-02	ci right 9.468313e-02	k: 329372	n:3490000
KS ci ratio: 1.112559e-01	ci left: 3.358011e-04	ci right 3.756373e-04	k: 1240	n:3490000
MUC4   3490000 perm   4932 sec   (708 perm/sec)   p_kst 3.553009e-04   p_cons 9.437593e-02   p_joint 1.942693e-04

Joint ci ratio: 1.503105e-01	ci left: 1.796817e-04	ci right 2.091556e-04	k: 679	n:3500000
Cons ci ratio: 6.490787e-03	ci left: 9.406877e-02	ci right 9.468161e-02	k: 330312	n:3500000
KS ci ratio: 1.111663e-01	ci left: 3.353972e-04	ci right 3.751514e-04	k: 1242	n:3500000
MUC4   3500000 perm   4958 sec   (706 perm/sec)   p_kst 3.548571e-04   p_cons 9.437486e-02   p_joint 1.940000e-04

Joint ci ratio: 1.500900e-01	ci left: 1.797182e-04	ci right 2.091509e-04	k: 681	n:3510000
Cons ci ratio: 6.481251e-03	ci left: 9.407668e-02	ci right 9.468867e-02	k: 331282	n:3510000
KS ci ratio: 1.108990e-01	ci left: 3.361036e-04	ci right 3.758394e-04	k: 1248	n:3510000
MUC4   3510000 perm   4985 sec   (704 perm/sec)   p_kst 3.555556e-04   p_cons 9.438234e-02   p_joint 1.940171e-04

Joint ci ratio: 1.496517e-01	ci left: 1.803014e-04	ci right 2.097357e-04	k: 685	n:3520000
Cons ci ratio: 6.471918e-03	ci left: 9.408028e-02	ci right 9.469141e-02	k: 332237	n:3520000
KS ci ratio: 1.107218e-01	ci left: 3.362536e-04	ci right 3.759395e-04	k: 1252	n:3520000
MUC4   3520000 perm   5011 sec   (702 perm/sec)   p_kst 3.556818e-04   p_cons 9.438551e-02   p_joint 1.946023e-04

Joint ci ratio: 1.491092e-01	ci left: 1.811541e-04	ci right 2.106108e-04	k: 690	n:3530000
Cons ci ratio: 6.462946e-03	ci left: 9.407538e-02	ci right 9.468563e-02	k: 333162	n:3530000
KS ci ratio: 1.105455e-01	ci left: 3.364028e-04	ci right 3.760390e-04	k: 1256	n:3530000
MUC4   3530000 perm   5038 sec   (701 perm/sec)   p_kst 3.558074e-04   p_cons 9.438017e-02   p_joint 1.954674e-04

Joint ci ratio: 1.488939e-01	ci left: 1.811863e-04	ci right 2.106019e-04	k: 692	n:3540000
Cons ci ratio: 6.454321e-03	ci left: 9.406233e-02	ci right 9.467167e-02	k: 334058	n:3540000
KS ci ratio: 1.104138e-01	ci left: 3.362766e-04	ci right 3.758476e-04	k: 1259	n:3540000
MUC4   3540000 perm   5065 sec   (699 perm/sec)   p_kst 3.556497e-04   p_cons 9.436667e-02   p_joint 1.954802e-04

Joint ci ratio: 1.487866e-01	ci left: 1.809471e-04	ci right 2.103008e-04	k: 693	n:3550000
Cons ci ratio: 6.445401e-03	ci left: 9.405807e-02	ci right 9.466654e-02	k: 334985	n:3550000
KS ci ratio: 1.102826e-01	ci left: 3.361511e-04	ci right 3.756573e-04	k: 1262	n:3550000
MUC4   3550000 perm   5092 sec   (697 perm/sec)   p_kst 3.554930e-04   p_cons 9.436197e-02   p_joint 1.952113e-04

Joint ci ratio: 1.486795e-01	ci left: 1.807093e-04	ci right 2.100014e-04	k: 694	n:3560000
Cons ci ratio: 6.436317e-03	ci left: 9.405916e-02	ci right 9.466678e-02	k: 335931	n:3560000
KS ci ratio: 1.101519e-01	ci left: 3.360263e-04	ci right 3.754680e-04	k: 1265	n:3560000
MUC4   3560000 perm   5119 sec   (695 perm/sec)   p_kst 3.553371e-04   p_cons 9.436264e-02   p_joint 1.949438e-04

Joint ci ratio: 1.482535e-01	ci left: 1.812819e-04	ci right 2.105752e-04	k: 698	n:3570000
Cons ci ratio: 6.427809e-03	ci left: 9.404598e-02	ci right 9.465271e-02	k: 336826	n:3570000
KS ci ratio: 1.098917e-01	ci left: 3.367195e-04	ci right 3.761432e-04	k: 1271	n:3570000
MUC4   3570000 perm   5145 sec   (694 perm/sec)   p_kst 3.560224e-04   p_cons 9.434902e-02   p_joint 1.955182e-04

Joint ci ratio: 1.481476e-01	ci left: 1.810445e-04	ci right 2.102767e-04	k: 699	n:3580000
Cons ci ratio: 6.418778e-03	ci left: 9.404767e-02	ci right 9.465355e-02	k: 337774	n:3580000
KS ci ratio: 1.097624e-01	ci left: 3.365939e-04	ci right 3.759535e-04	k: 1274	n:3580000
MUC4   3580000 perm   5172 sec   (692 perm/sec)   p_kst 3.558659e-04   p_cons 9.435028e-02   p_joint 1.952514e-04

Joint ci ratio: 1.480419e-01	ci left: 1.808084e-04	ci right 2.099799e-04	k: 700	n:3590000
Cons ci ratio: 6.410234e-03	ci left: 9.403738e-02	ci right 9.464239e-02	k: 338679	n:3590000
KS ci ratio: 1.095906e-01	ci left: 3.367399e-04	ci right 3.760510e-04	k: 1278	n:3590000
MUC4   3590000 perm   5200 sec   (690 perm/sec)   p_kst 3.559889e-04   p_cons 9.433955e-02   p_joint 1.949861e-04

Joint ci ratio: 1.478311e-01	ci left: 1.808412e-04	ci right 2.099727e-04	k: 702	n:3600000
Cons ci ratio: 6.400944e-03	ci left: 9.404795e-02	ci right 9.465215e-02	k: 339659	n:3600000
KS ci ratio: 1.093770e-01	ci left: 3.371554e-04	ci right 3.764333e-04	k: 1283	n:3600000
MUC4   3600000 perm   5226 sec   (689 perm/sec)   p_kst 3.563889e-04   p_cons 9.434972e-02   p_joint 1.950000e-04

Joint ci ratio: 1.478312e-01	ci left: 1.803402e-04	ci right 2.093911e-04	k: 702	n:3610000
Cons ci ratio: 6.392865e-03	ci left: 9.402721e-02	ci right 9.463051e-02	k: 340526	n:3610000
KS ci ratio: 1.093345e-01	ci left: 3.364909e-04	ci right 3.756752e-04	k: 1284	n:3610000
MUC4   3610000 perm   5253 sec   (687 perm/sec)   p_kst 3.556787e-04   p_cons 9.432853e-02   p_joint 1.944598e-04

Joint ci ratio: 1.475167e-01	ci left: 1.806402e-04	ci right 2.096720e-04	k: 705	n:3620000
Cons ci ratio: 6.384455e-03	ci left: 9.401624e-02	ci right 9.461867e-02	k: 341428	n:3620000
KS ci ratio: 1.090801e-01	ci left: 3.371735e-04	ci right 3.763401e-04	k: 1290	n:3620000
MUC4   3620000 perm   5281 sec   (686 perm/sec)   p_kst 3.563536e-04   p_cons 9.431713e-02   p_joint 1.947514e-04

Joint ci ratio: 1.473082e-01	ci left: 1.806732e-04	ci right 2.096656e-04	k: 707	n:3630000
Cons ci ratio: 6.375544e-03	ci left: 9.401963e-02	ci right 9.462124e-02	k: 342382	n:3630000
KS ci ratio: 1.089115e-01	ci left: 3.373166e-04	ci right 3.764353e-04	k: 1294	n:3630000
MUC4   3630000 perm   5307 sec   (684 perm/sec)   p_kst 3.564738e-04   p_cons 9.432011e-02   p_joint 1.947658e-04

Joint ci ratio: 1.465853e-01	ci left: 1.820292e-04	ci right 2.110833e-04	k: 714	n:3640000
Cons ci ratio: 6.366536e-03	ci left: 9.402657e-02	ci right 9.462737e-02	k: 343349	n:3640000
KS ci ratio: 1.086183e-01	ci left: 3.382607e-04	ci right 3.773765e-04	k: 1301	n:3640000
MUC4   3640000 perm   5335 sec   (682 perm/sec)   p_kst 3.574176e-04   p_cons 9.432665e-02   p_joint 1.961538e-04

Joint ci ratio: 1.464829e-01	ci left: 1.817944e-04	ci right 2.107890e-04	k: 715	n:3650000
Cons ci ratio: 6.357914e-03	ci left: 9.402417e-02	ci right 9.462414e-02	k: 344282	n:3650000
KS ci ratio: 1.085766e-01	ci left: 3.376004e-04	ci right 3.766240e-04	k: 1302	n:3650000
MUC4   3650000 perm   5362 sec   (681 perm/sec)   p_kst 3.567123e-04   p_cons 9.432384e-02   p_joint 1.958904e-04

Joint ci ratio: 1.462787e-01	ci left: 1.818242e-04	ci right 2.107796e-04	k: 717	n:3660000
Cons ci ratio: 6.349610e-03	ci left: 9.401415e-02	ci right 9.461327e-02	k: 345187	n:3660000
KS ci ratio: 1.084518e-01	ci left: 3.374755e-04	ci right 3.764369e-04	k: 1305	n:3660000
MUC4   3660000 perm   5390 sec   (679 perm/sec)   p_kst 3.565574e-04   p_cons 9.431339e-02   p_joint 1.959016e-04

Joint ci ratio: 1.460754e-01	ci left: 1.818537e-04	ci right 2.107701e-04	k: 719	n:3670000
Cons ci ratio: 6.341400e-03	ci left: 9.400255e-02	ci right 9.460082e-02	k: 346086	n:3670000
KS ci ratio: 1.082448e-01	ci left: 3.378814e-04	ci right 3.768105e-04	k: 1310	n:3670000
MUC4   3670000 perm   5417 sec   (677 perm/sec)   p_kst 3.569482e-04   p_cons 9.430136e-02   p_joint 1.959128e-04

Joint ci ratio: 1.459741e-01	ci left: 1.816214e-04	ci right 2.104790e-04	k: 720	n:3680000
Cons ci ratio: 6.333212e-03	ci left: 9.399128e-02	ci right 9.458870e-02	k: 346986	n:3680000
KS ci ratio: 1.080390e-01	ci left: 3.382852e-04	ci right 3.771820e-04	k: 1315	n:3680000
MUC4   3680000 perm   5445 sec   (676 perm/sec)   p_kst 3.573370e-04   p_cons 9.428967e-02   p_joint 1.956522e-04

Joint ci ratio: 1.458730e-01	ci left: 1.813903e-04	ci right 2.101895e-04	k: 721	n:3690000
Cons ci ratio: 6.324433e-03	ci left: 9.399686e-02	ci right 9.459348e-02	k: 347948	n:3690000
KS ci ratio: 1.079160e-01	ci left: 3.381595e-04	ci right 3.769948e-04	k: 1318	n:3690000
MUC4   3690000 perm   5473 sec   (674 perm/sec)   p_kst 3.571816e-04   p_cons 9.429485e-02   p_joint 1.953930e-04

Joint ci ratio: 1.455709e-01	ci left: 1.816813e-04	ci right 2.104618e-04	k: 724	n:3700000
Cons ci ratio: 6.316010e-03	ci left: 9.399377e-02	ci right 9.458957e-02	k: 348878	n:3700000
KS ci ratio: 1.077935e-01	ci left: 3.380345e-04	ci right 3.768085e-04	k: 1321	n:3700000
MUC4   3700000 perm   5501 sec   (673 perm/sec)   p_kst 3.570270e-04   p_cons 9.429135e-02   p_joint 1.956757e-04

Joint ci ratio: 1.454706e-01	ci left: 1.814513e-04	ci right 2.101738e-04	k: 725	n:3710000
Cons ci ratio: 6.308088e-03	ci left: 9.397804e-02	ci right 9.457300e-02	k: 349761	n:3710000
KS ci ratio: 1.076308e-01	ci left: 3.381725e-04	ci right 3.769001e-04	k: 1325	n:3710000
MUC4   3710000 perm   5529 sec   (671 perm/sec)   p_kst 3.571429e-04   p_cons 9.427520e-02   p_joint 1.954178e-04

Joint ci ratio: 1.453705e-01	ci left: 1.812226e-04	ci right 2.098875e-04	k: 726	n:3720000
Cons ci ratio: 6.300088e-03	ci left: 9.396535e-02	ci right 9.455947e-02	k: 350655	n:3720000
KS ci ratio: 1.074688e-01	ci left: 3.383097e-04	ci right 3.769911e-04	k: 1329	n:3720000
MUC4   3720000 perm   5558 sec   (669 perm/sec)   p_kst 3.572581e-04   p_cons 9.426210e-02   p_joint 1.951613e-04

Joint ci ratio: 1.450715e-01	ci left: 1.815118e-04	ci right 2.101582e-04	k: 729	n:3730000
Cons ci ratio: 6.291228e-03	ci left: 9.397683e-02	ci right 9.457018e-02	k: 351639	n:3730000
KS ci ratio: 1.073478e-01	ci left: 3.381854e-04	ci right 3.768063e-04	k: 1332	n:3730000
MUC4   3730000 perm   5586 sec   (668 perm/sec)   p_kst 3.571046e-04   p_cons 9.427319e-02   p_joint 1.954424e-04

Joint ci ratio: 1.447743e-01	ci left: 1.817995e-04	ci right 2.104275e-04	k: 732	n:3740000
Cons ci ratio: 6.282504e-03	ci left: 9.398557e-02	ci right 9.457816e-02	k: 352613	n:3740000
KS ci ratio: 1.071471e-01	ci left: 3.385822e-04	ci right 3.771715e-04	k: 1337	n:3740000
MUC4   3740000 perm   5614 sec   (666 perm/sec)   p_kst 3.574866e-04   p_cons 9.428155e-02   p_joint 1.957219e-04

Joint ci ratio: 1.445772e-01	ci left: 1.818288e-04	ci right 2.104190e-04	k: 734	n:3750000
Cons ci ratio: 6.274003e-03	ci left: 9.398921e-02	ci right 9.458101e-02	k: 353568	n:3750000
KS ci ratio: 1.070271e-01	ci left: 3.384579e-04	ci right 3.769871e-04	k: 1340	n:3750000
MUC4   3750000 perm   5642 sec   (665 perm/sec)   p_kst 3.573333e-04   p_cons 9.428480e-02   p_joint 1.957333e-04

Joint ci ratio: 1.443809e-01	ci left: 1.818579e-04	ci right 2.104105e-04	k: 736	n:3760000
Cons ci ratio: 6.266092e-03	ci left: 9.397770e-02	ci right 9.456867e-02	k: 354466	n:3760000
KS ci ratio: 1.068679e-01	ci left: 3.385931e-04	ci right 3.770768e-04	k: 1344	n:3760000
MUC4   3760000 perm   5670 sec   (663 perm/sec)   p_kst 3.574468e-04   p_cons 9.427287e-02   p_joint 1.957447e-04

Joint ci ratio: 1.443809e-01	ci left: 1.813755e-04	ci right 2.098524e-04	k: 736	n:3770000
Cons ci ratio: 6.258026e-03	ci left: 9.397127e-02	ci right 9.456145e-02	k: 355383	n:3770000
KS ci ratio: 1.067885e-01	ci left: 3.382113e-04	ci right 3.766213e-04	k: 1346	n:3770000
MUC4   3770000 perm   5698 sec   (662 perm/sec)   p_kst 3.570292e-04   p_cons 9.426605e-02   p_joint 1.952255e-04

Joint ci ratio: 1.440879e-01	ci left: 1.816607e-04	ci right 2.101195e-04	k: 739	n:3780000
Cons ci ratio: 6.249642e-03	ci left: 9.397439e-02	ci right 9.456379e-02	k: 356336	n:3780000
KS ci ratio: 1.064335e-01	ci left: 3.396341e-04	ci right 3.780693e-04	k: 1355	n:3780000
MUC4   3780000 perm   5727 sec   (660 perm/sec)   p_kst 3.584656e-04   p_cons 9.426878e-02   p_joint 1.955026e-04

Joint ci ratio: 1.439907e-01	ci left: 1.814357e-04	ci right 2.098385e-04	k: 740	n:3790000
Cons ci ratio: 6.241669e-03	ci left: 9.396722e-02	ci right 9.455582e-02	k: 357250	n:3790000
KS ci ratio: 1.062768e-01	ci left: 3.397653e-04	ci right 3.781552e-04	k: 1359	n:3790000
MUC4   3790000 perm   5755 sec   (659 perm/sec)   p_kst 3.585752e-04   p_cons 9.426121e-02   p_joint 1.952507e-04

Joint ci ratio: 1.437001e-01	ci left: 1.817193e-04	ci right 2.101041e-04	k: 743	n:3800000
Cons ci ratio: 6.233380e-03	ci left: 9.396955e-02	ci right 9.455738e-02	k: 358200	n:3800000
KS ci ratio: 1.061209e-01	ci left: 3.398958e-04	ci right 3.782407e-04	k: 1363	n:3800000
MUC4   3800000 perm   5784 sec   (657 perm/sec)   p_kst 3.586842e-04   p_cons 9.426316e-02   p_joint 1.955263e-04

Joint ci ratio: 1.436036e-01	ci left: 1.814954e-04	ci right 2.098246e-04	k: 744	n:3810000
Cons ci ratio: 6.224779e-03	ci left: 9.398130e-02	ci right 9.456839e-02	k: 359186	n:3810000
KS ci ratio: 1.060044e-01	ci left: 3.397702e-04	ci right 3.780562e-04	k: 1366	n:3810000
MUC4   3810000 perm   5812 sec   (656 perm/sec)   p_kst 3.585302e-04   p_cons 9.427454e-02   p_joint 1.952756e-04

Joint ci ratio: 1.435074e-01	ci left: 1.812726e-04	ci right 2.095465e-04	k: 745	n:3820000
Cons ci ratio: 6.216195e-03	ci left: 9.399352e-02	ci right 9.457987e-02	k: 360174	n:3820000
KS ci ratio: 1.059269e-01	ci left: 3.393905e-04	ci right 3.776039e-04	k: 1368	n:3820000
MUC4   3820000 perm   5841 sec   (654 perm/sec)   p_kst 3.581152e-04   p_cons 9.428639e-02   p_joint 1.950262e-04

Joint ci ratio: 1.432197e-01	ci left: 1.815545e-04	ci right 2.098107e-04	k: 748	n:3830000
Cons ci ratio: 6.208348e-03	ci left: 9.398637e-02	ci right 9.457194e-02	k: 361088	n:3830000
KS ci ratio: 1.058111e-01	ci left: 3.392669e-04	ci right 3.774221e-04	k: 1371	n:3830000
MUC4   3830000 perm   5870 sec   (652 perm/sec)   p_kst 3.579634e-04   p_cons 9.427885e-02   p_joint 1.953003e-04

Joint ci ratio: 1.431242e-01	ci left: 1.813328e-04	ci right 2.095341e-04	k: 749	n:3840000
Cons ci ratio: 6.200248e-03	ci left: 9.398707e-02	ci right 9.457188e-02	k: 362032	n:3840000
KS ci ratio: 1.057726e-01	ci left: 3.386369e-04	ci right 3.767065e-04	k: 1372	n:3840000
MUC4   3840000 perm   5898 sec   (651 perm/sec)   p_kst 3.572917e-04   p_cons 9.427917e-02   p_joint 1.950521e-04

Joint ci ratio: 1.428388e-01	ci left: 1.816132e-04	ci right 2.097969e-04	k: 752	n:3850000
Cons ci ratio: 6.192302e-03	ci left: 9.398439e-02	ci right 9.456843e-02	k: 362963	n:3850000
KS ci ratio: 1.055422e-01	ci left: 3.392746e-04	ci right 3.773276e-04	k: 1378	n:3850000
MUC4   3850000 perm   5927 sec   (650 perm/sec)   p_kst 3.579221e-04   p_cons 9.427610e-02   p_joint 1.953247e-04

Joint ci ratio: 1.427440e-01	ci left: 1.813925e-04	ci right 2.095217e-04	k: 753	n:3860000
Cons ci ratio: 6.183898e-03	ci left: 9.399518e-02	ci right 9.457849e-02	k: 363946	n:3860000
KS ci ratio: 1.053894e-01	ci left: 3.394046e-04	ci right 3.774137e-04	k: 1382	n:3860000
MUC4   3860000 perm   5955 sec   (648 perm/sec)   p_kst 3.580311e-04   p_cons 9.428653e-02   p_joint 1.950777e-04

Joint ci ratio: 1.426495e-01	ci left: 1.811729e-04	ci right 2.092479e-04	k: 754	n:3870000
Cons ci ratio: 6.176463e-03	ci left: 9.398011e-02	ci right 9.456262e-02	k: 364829	n:3870000
KS ci ratio: 1.052753e-01	ci left: 3.392823e-04	ci right 3.772341e-04	k: 1385	n:3870000
MUC4   3870000 perm   5984 sec   (647 perm/sec)   p_kst 3.578811e-04   p_cons 9.427106e-02   p_joint 1.948320e-04

Joint ci ratio: 1.426495e-01	ci left: 1.807060e-04	ci right 2.087086e-04	k: 754	n:3880000
Cons ci ratio: 6.168318e-03	ci left: 9.398545e-02	ci right 9.456722e-02	k: 365791	n:3880000
KS ci ratio: 1.052754e-01	ci left: 3.384079e-04	ci right 3.762618e-04	k: 1385	n:3880000
MUC4   3880000 perm   6013 sec   (645 perm/sec)   p_kst 3.569588e-04   p_cons 9.427603e-02   p_joint 1.943299e-04

Joint ci ratio: 1.423669e-01	ci left: 1.809852e-04	ci right 2.089708e-04	k: 757	n:3890000
Cons ci ratio: 6.160234e-03	ci left: 9.398999e-02	ci right 9.457103e-02	k: 366750	n:3890000
KS ci ratio: 1.050860e-01	ci left: 3.387895e-04	ci right 3.766137e-04	k: 1390	n:3890000
MUC4   3890000 perm   6043 sec   (644 perm/sec)   p_kst 3.573265e-04   p_cons 9.428021e-02   p_joint 1.946015e-04

Joint ci ratio: 1.420860e-01	ci left: 1.812630e-04	ci right 2.092315e-04	k: 760	n:3900000
Cons ci ratio: 6.152127e-03	ci left: 9.399605e-02	ci right 9.457635e-02	k: 367715	n:3900000
KS ci ratio: 1.047850e-01	ci left: 3.399182e-04	ci right 3.777531e-04	k: 1398	n:3900000
MUC4   3900000 perm   6072 sec   (642 perm/sec)   p_kst 3.584615e-04   p_cons 9.428590e-02   p_joint 1.948718e-04

Joint ci ratio: 1.417140e-01	ci left: 1.817861e-04	ci right 2.097557e-04	k: 764	n:3910000
Cons ci ratio: 6.144354e-03	ci left: 9.399364e-02	ci right 9.457320e-02	k: 368647	n:3910000
KS ci ratio: 1.045610e-01	ci left: 3.405432e-04	ci right 3.783617e-04	k: 1404	n:3910000
MUC4   3910000 perm   6101 sec   (641 perm/sec)   p_kst 3.590793e-04   p_cons 9.428312e-02   p_joint 1.953964e-04

Joint ci ratio: 1.416215e-01	ci left: 1.815684e-04	ci right 2.094848e-04	k: 765	n:3920000
Cons ci ratio: 6.136327e-03	ci left: 9.399915e-02	ci right 9.457798e-02	k: 369610	n:3920000
KS ci ratio: 1.044125e-01	ci left: 3.406682e-04	ci right 3.784435e-04	k: 1408	n:3920000
MUC4   3920000 perm   6131 sec   (639 perm/sec)   p_kst 3.591837e-04   p_cons 9.428827e-02   p_joint 1.951531e-04

Joint ci ratio: 1.416215e-01	ci left: 1.811064e-04	ci right 2.089517e-04	k: 765	n:3930000
Cons ci ratio: 6.128277e-03	ci left: 9.400615e-02	ci right 9.458426e-02	k: 370579	n:3930000
KS ci ratio: 1.043385e-01	ci left: 3.402970e-04	ci right 3.780028e-04	k: 1410	n:3930000
MUC4   3930000 perm   6161 sec   (638 perm/sec)   p_kst 3.587786e-04   p_cons 9.429491e-02   p_joint 1.946565e-04

Joint ci ratio: 1.410700e-01	ci left: 1.821157e-04	ci right 2.099981e-04	k: 771	n:3940000
Cons ci ratio: 6.120149e-03	ci left: 9.401617e-02	ci right 9.459357e-02	k: 371560	n:3940000
KS ci ratio: 1.041173e-01	ci left: 3.409165e-04	ci right 3.786059e-04	k: 1416	n:3940000
MUC4   3940000 perm   6191 sec   (636 perm/sec)   p_kst 3.593909e-04   p_cons 9.430457e-02   p_joint 1.956853e-04

Joint ci ratio: 1.409788e-01	ci left: 1.818989e-04	ci right 2.097285e-04	k: 772	n:3950000
Cons ci ratio: 6.112126e-03	ci left: 9.402410e-02	ci right 9.460079e-02	k: 372533	n:3950000
KS ci ratio: 1.040439e-01	ci left: 3.405465e-04	ci right 3.781669e-04	k: 1418	n:3950000
MUC4   3950000 perm   6221 sec   (635 perm/sec)   p_kst 3.589873e-04   p_cons 9.431215e-02   p_joint 1.954430e-04

Joint ci ratio: 1.407968e-01	ci left: 1.819268e-04	ci right 2.097217e-04	k: 774	n:3960000
Cons ci ratio: 6.104341e-03	ci left: 9.402620e-02	ci right 9.460217e-02	k: 373483	n:3960000
KS ci ratio: 1.037518e-01	ci left: 3.416543e-04	ci right 3.792846e-04	k: 1426	n:3960000
MUC4   3960000 perm   6251 sec   (634 perm/sec)   p_kst 3.601010e-04   p_cons 9.431389e-02   p_joint 1.954545e-04

Joint ci ratio: 1.405250e-01	ci left: 1.821976e-04	ci right 2.099757e-04	k: 777	n:3970000
Cons ci ratio: 6.096722e-03	ci left: 9.402452e-02	ci right 9.459975e-02	k: 374418	n:3970000
KS ci ratio: 1.034982e-01	ci left: 3.425112e-04	ci right 3.801381e-04	k: 1433	n:3970000
MUC4   3970000 perm   6281 sec   (632 perm/sec)   p_kst 3.609572e-04   p_cons 9.431184e-02   p_joint 1.957179e-04

Joint ci ratio: 1.402548e-01	ci left: 1.824671e-04	ci right 2.102284e-04	k: 780	n:3980000
Cons ci ratio: 6.088915e-03	ci left: 9.402886e-02	ci right 9.460339e-02	k: 375377	n:3980000
KS ci ratio: 1.033183e-01	ci left: 3.428745e-04	ci right 3.804718e-04	k: 1438	n:3980000
MUC4   3980000 perm   6311 sec   (631 perm/sec)   p_kst 3.613065e-04   p_cons 9.431583e-02   p_joint 1.959799e-04

Joint ci ratio: 1.399862e-01	ci left: 1.827354e-04	ci right 2.104797e-04	k: 783	n:3990000
Cons ci ratio: 6.081425e-03	ci left: 9.402518e-02	ci right 9.459897e-02	k: 376304	n:3990000
KS ci ratio: 1.031750e-01	ci left: 3.429917e-04	ci right 3.805466e-04	k: 1442	n:3990000
MUC4   3990000 perm   6341 sec   (629 perm/sec)   p_kst 3.614035e-04   p_cons 9.431178e-02   p_joint 1.962406e-04

Joint ci ratio: 1.399863e-01	ci left: 1.822785e-04	ci right 2.099535e-04	k: 783	n:4000000
Cons ci ratio: 6.074059e-03	ci left: 9.401877e-02	ci right 9.459182e-02	k: 377220	n:4000000
KS ci ratio: 1.030679e-01	ci left: 3.428649e-04	ci right 3.803646e-04	k: 1445	n:4000000
MUC4   4000000 perm   6372 sec   (628 perm/sec)   p_kst 3.612500e-04   p_cons 9.430500e-02   p_joint 1.957500e-04

Joint ci ratio: 1.396305e-01	ci left: 1.827866e-04	ci right 2.104623e-04	k: 787	n:4010000
Cons ci ratio: 6.066676e-03	ci left: 9.401363e-02	ci right 9.458596e-02	k: 378141	n:4010000
KS ci ratio: 1.028901e-01	ci left: 3.432247e-04	ci right 3.806950e-04	k: 1450	n:4010000
MUC4   4010000 perm   6402 sec   (626 perm/sec)   p_kst 3.615960e-04   p_cons 9.429950e-02   p_joint 1.962594e-04

Joint ci ratio: 1.394536e-01	ci left: 1.828120e-04	ci right 2.104536e-04	k: 789	n:4020000
Cons ci ratio: 6.059046e-03	ci left: 9.401622e-02	ci right 9.458784e-02	k: 379093	n:4020000
KS ci ratio: 1.027839e-01	ci left: 3.430979e-04	ci right 3.805135e-04	k: 1453	n:4020000
MUC4   4020000 perm   6431 sec   (625 perm/sec)   p_kst 3.614428e-04   p_cons 9.430174e-02   p_joint 1.962687e-04

Joint ci ratio: 1.392774e-01	ci left: 1.828374e-04	ci right 2.104450e-04	k: 791	n:4030000
Cons ci ratio: 6.051753e-03	ci left: 9.401013e-02	ci right 9.458102e-02	k: 380010	n:4030000
KS ci ratio: 1.025725e-01	ci left: 3.436972e-04	ci right 3.810963e-04	k: 1459	n:4030000
MUC4   4030000 perm   6461 sec   (624 perm/sec)   p_kst 3.620347e-04   p_cons 9.429529e-02   p_joint 1.962779e-04

Joint ci ratio: 1.390144e-01	ci left: 1.831015e-04	ci right 2.106925e-04	k: 794	n:4040000
Cons ci ratio: 6.044320e-03	ci left: 9.400877e-02	ci right 9.457894e-02	k: 380946	n:4040000
KS ci ratio: 1.023973e-01	ci left: 3.440524e-04	ci right 3.814223e-04	k: 1464	n:4040000
MUC4   4040000 perm   6491 sec   (622 perm/sec)   p_kst 3.623762e-04   p_cons 9.429356e-02   p_joint 1.965347e-04

Joint ci ratio: 1.388398e-01	ci left: 1.831261e-04	ci right 2.106832e-04	k: 796	n:4050000
Cons ci ratio: 6.036966e-03	ci left: 9.400593e-02	ci right 9.457539e-02	k: 381876	n:4050000
KS ci ratio: 1.022578e-01	ci left: 3.441652e-04	ci right 3.814935e-04	k: 1468	n:4050000
MUC4   4050000 perm   6521 sec   (621 perm/sec)   p_kst 3.624691e-04   p_cons 9.429037e-02   p_joint 1.965432e-04

Joint ci ratio: 1.384927e-01	ci left: 1.836261e-04	ci right 2.111837e-04	k: 800	n:4060000
Cons ci ratio: 6.029665e-03	ci left: 9.400237e-02	ci right 9.457112e-02	k: 382803	n:4060000
KS ci ratio: 1.020496e-01	ci left: 3.447576e-04	ci right 3.820694e-04	k: 1474	n:4060000
MUC4   4060000 perm   6551 sec   (620 perm/sec)   p_kst 3.630542e-04   p_cons 9.428645e-02   p_joint 1.970443e-04

Joint ci ratio: 1.382341e-01	ci left: 1.838865e-04	ci right 2.114274e-04	k: 803	n:4070000
Cons ci ratio: 6.022286e-03	ci left: 9.400177e-02	ci right 9.456982e-02	k: 383742	n:4070000
KS ci ratio: 1.019805e-01	ci left: 3.443894e-04	ci right 3.816346e-04	k: 1476	n:4070000
MUC4   4070000 perm   6581 sec   (618 perm/sec)   p_kst 3.626536e-04   p_cons 9.428550e-02   p_joint 1.972973e-04

Joint ci ratio: 1.382341e-01	ci left: 1.834358e-04	ci right 2.109092e-04	k: 803	n:4080000
Cons ci ratio: 6.014987e-03	ci left: 9.399970e-02	ci right 9.456705e-02	k: 384675	n:4080000
KS ci ratio: 1.018771e-01	ci left: 3.442619e-04	ci right 3.814532e-04	k: 1479	n:4080000
MUC4   4080000 perm   6612 sec   (617 perm/sec)   p_kst 3.625000e-04   p_cons 9.428309e-02   p_joint 1.968137e-04

Joint ci ratio: 1.380625e-01	ci left: 1.834594e-04	ci right 2.108994e-04	k: 805	n:4090000
Cons ci ratio: 6.007533e-03	ci left: 9.400278e-02	ci right 9.456944e-02	k: 385629	n:4090000
KS ci ratio: 1.016711e-01	ci left: 3.448498e-04	ci right 3.820249e-04	k: 1485	n:4090000
MUC4   4090000 perm   6642 sec   (616 perm/sec)   p_kst 3.630807e-04   p_cons 9.428582e-02   p_joint 1.968215e-04

Joint ci ratio: 1.380625e-01	ci left: 1.830119e-04	ci right 2.103850e-04	k: 805	n:4100000
Cons ci ratio: 6.000312e-03	ci left: 9.399999e-02	ci right 9.456595e-02	k: 386559	n:4100000
KS ci ratio: 1.016712e-01	ci left: 3.440087e-04	ci right 3.810931e-04	k: 1485	n:4100000
MUC4   4100000 perm   6673 sec   (614 perm/sec)   p_kst 3.621951e-04   p_cons 9.428268e-02   p_joint 1.963415e-04

Joint ci ratio: 1.378915e-01	ci left: 1.830365e-04	ci right 2.103765e-04	k: 807	n:4110000
Cons ci ratio: 5.993237e-03	ci left: 9.399382e-02	ci right 9.455907e-02	k: 387475	n:4110000
KS ci ratio: 1.016029e-01	ci left: 3.436459e-04	ci right 3.806649e-04	k: 1487	n:4110000
MUC4   4110000 perm   6704 sec   (613 perm/sec)   p_kst 3.618005e-04   p_cons 9.427616e-02   p_joint 1.963504e-04

Joint ci ratio: 1.374668e-01	ci left: 1.837640e-04	ci right 2.111213e-04	k: 812	n:4120000
Cons ci ratio: 5.985668e-03	ci left: 9.400246e-02	ci right 9.456705e-02	k: 388452	n:4120000
KS ci ratio: 1.014326e-01	ci left: 3.439946e-04	ci right 3.809853e-04	k: 1492	n:4120000
MUC4   4120000 perm   6735 sec   (612 perm/sec)   p_kst 3.621359e-04   p_cons 9.428447e-02   p_joint 1.970874e-04

Joint ci ratio: 1.372139e-01	ci left: 1.840205e-04	ci right 2.113614e-04	k: 815	n:4130000
Cons ci ratio: 5.978314e-03	ci left: 9.400574e-02	ci right 9.456965e-02	k: 389407	n:4130000
KS ci ratio: 1.012631e-01	ci left: 3.443417e-04	ci right 3.813042e-04	k: 1497	n:4130000
MUC4   4130000 perm   6766 sec   (610 perm/sec)   p_kst 3.624697e-04   p_cons 9.428741e-02   p_joint 1.973366e-04

Joint ci ratio: 1.371299e-01	ci left: 1.838092e-04	ci right 2.111007e-04	k: 816	n:4140000
Cons ci ratio: 5.971207e-03	ci left: 9.400273e-02	ci right 9.456595e-02	k: 390336	n:4140000
KS ci ratio: 1.011619e-01	ci left: 3.442162e-04	ci right 3.811261e-04	k: 1500	n:4140000
MUC4   4140000 perm   6796 sec   (609 perm/sec)   p_kst 3.623188e-04   p_cons 9.428406e-02   p_joint 1.971014e-04

Joint ci ratio: 1.367121e-01	ci left: 1.845299e-04	ci right 2.118381e-04	k: 821	n:4150000
Cons ci ratio: 5.963855e-03	ci left: 9.400744e-02	ci right 9.456999e-02	k: 391297	n:4150000
KS ci ratio: 1.009268e-01	ci left: 3.450309e-04	ci right 3.819371e-04	k: 1507	n:4150000
MUC4   4150000 perm   6827 sec   (608 perm/sec)   p_kst 3.631325e-04   p_cons 9.428843e-02   p_joint 1.978313e-04

Joint ci ratio: 1.367122e-01	ci left: 1.840863e-04	ci right 2.113289e-04	k: 821	n:4160000
Cons ci ratio: 5.956741e-03	ci left: 9.400612e-02	ci right 9.456800e-02	k: 392233	n:4160000
KS ci ratio: 1.008599e-01	ci left: 3.446702e-04	ci right 3.815119e-04	k: 1509	n:4160000
MUC4   4160000 perm   6859 sec   (607 perm/sec)   p_kst 3.627404e-04   p_cons 9.428678e-02   p_joint 1.973558e-04

Joint ci ratio: 1.365462e-01	ci left: 1.841081e-04	ci right 2.113181e-04	k: 823	n:4170000
Cons ci ratio: 5.949944e-03	ci left: 9.399643e-02	ci right 9.455761e-02	k: 393134	n:4170000
KS ci ratio: 1.007932e-01	ci left: 3.443111e-04	ci right 3.810887e-04	k: 1511	n:4170000
MUC4   4170000 perm   6890 sec   (605 perm/sec)   p_kst 3.623501e-04   p_cons 9.427674e-02   p_joint 1.973621e-04

Joint ci ratio: 1.364634e-01	ci left: 1.838987e-04	ci right 2.110600e-04	k: 824	n:4180000
Cons ci ratio: 5.943045e-03	ci left: 9.399037e-02	ci right 9.455086e-02	k: 394050	n:4180000
KS ci ratio: 1.007267e-01	ci left: 3.439538e-04	ci right 3.806675e-04	k: 1513	n:4180000
MUC4   4180000 perm   6922 sec   (604 perm/sec)   p_kst 3.619617e-04   p_cons 9.427033e-02   p_joint 1.971292e-04

Joint ci ratio: 1.363808e-01	ci left: 1.836903e-04	ci right 2.108030e-04	k: 825	n:4190000
Cons ci ratio: 5.935988e-03	ci left: 9.398959e-02	ci right 9.454940e-02	k: 394988	n:4190000
KS ci ratio: 1.006602e-01	ci left: 3.435982e-04	ci right 3.802484e-04	k: 1515	n:4190000
MUC4   4190000 perm   6952 sec   (603 perm/sec)   p_kst 3.615752e-04   p_cons 9.426921e-02   p_joint 1.968974e-04

Joint ci ratio: 1.363808e-01	ci left: 1.832529e-04	ci right 2.103011e-04	k: 825	n:4200000
Cons ci ratio: 5.929055e-03	ci left: 9.398595e-02	ci right 9.454508e-02	k: 395914	n:4200000
KS ci ratio: 1.006603e-01	ci left: 3.427801e-04	ci right 3.793430e-04	k: 1515	n:4200000
MUC4   4200000 perm   6983 sec   (601 perm/sec)   p_kst 3.607143e-04   p_cons 9.426524e-02   p_joint 1.964286e-04

Joint ci ratio: 1.360518e-01	ci left: 1.837354e-04	ci right 2.107841e-04	k: 829	n:4210000
Cons ci ratio: 5.922139e-03	ci left: 9.398257e-02	ci right 9.454103e-02	k: 396841	n:4210000
KS ci ratio: 1.004286e-01	ci left: 3.435868e-04	ci right 3.801465e-04	k: 1522	n:4210000
MUC4   4210000 perm   7015 sec   (600 perm/sec)   p_kst 3.615202e-04   p_cons 9.426152e-02   p_joint 1.969121e-04

Joint ci ratio: 1.360518e-01	ci left: 1.833000e-04	ci right 2.102846e-04	k: 829	n:4220000
Cons ci ratio: 5.914991e-03	ci left: 9.398654e-02	ci right 9.454435e-02	k: 397799	n:4220000
KS ci ratio: 1.003957e-01	ci left: 3.430037e-04	ci right 3.794886e-04	k: 1523	n:4220000
MUC4   4220000 perm   7047 sec   (599 perm/sec)   p_kst 3.609005e-04   p_cons 9.426517e-02   p_joint 1.964455e-04

Joint ci ratio: 1.358882e-01	ci left: 1.833234e-04	ci right 2.102764e-04	k: 831	n:4230000
Cons ci ratio: 5.908214e-03	ci left: 9.398058e-02	ci right 9.453771e-02	k: 398715	n:4230000
KS ci ratio: 1.002970e-01	ci left: 3.428842e-04	ci right 3.793184e-04	k: 1526	n:4230000
MUC4   4230000 perm   7078 sec   (598 perm/sec)   p_kst 3.607565e-04   p_cons 9.425887e-02   p_joint 1.964539e-04

Joint ci ratio: 1.357251e-01	ci left: 1.833467e-04	ci right 2.102681e-04	k: 833	n:4240000
Cons ci ratio: 5.901443e-03	ci left: 9.397512e-02	ci right 9.453157e-02	k: 399633	n:4240000
KS ci ratio: 1.001659e-01	ci left: 3.429953e-04	ci right 3.793909e-04	k: 1530	n:4240000
MUC4   4240000 perm   7108 sec   (596 perm/sec)   p_kst 3.608491e-04   p_cons 9.425307e-02   p_joint 1.964623e-04

Joint ci ratio: 1.356439e-01	ci left: 1.831426e-04	ci right 2.100167e-04	k: 834	n:4250000
Cons ci ratio: 5.894695e-03	ci left: 9.396968e-02	ci right 9.452546e-02	k: 400551	n:4250000
KS ci ratio: 1.001333e-01	ci left: 3.424176e-04	ci right 3.787394e-04	k: 1531	n:4250000
MUC4   4250000 perm   7139 sec   (595 perm/sec)   p_kst 3.602353e-04   p_cons 9.424729e-02   p_joint 1.962353e-04

Joint ci ratio: 1.354008e-01	ci left: 1.833931e-04	ci right 2.102517e-04	k: 837	n:4260000
Cons ci ratio: 5.587473e-03	ci left: 1.032836e-01	ci right 1.038625e-01	k: 441220	n:4260000
KS ci ratio: 1.000028e-01	ci left: 3.425293e-04	ci right 3.788128e-04	k: 1535	n:4260000
MUC4   4260000 perm   7171 sec   (594 perm/sec)   p_kst 3.603286e-04   p_cons 1.035728e-01   p_joint 1.964789e-04

Joint ci ratio: 1.349986e-01	ci left: 1.840949e-04	ci right 2.109699e-04	k: 842	n:4270000
Cons ci ratio: 5.581128e-03	ci left: 1.032772e-01	ci right 1.038554e-01	k: 442227	n:4270000
KS ci ratio: 9.971103e-02	ci left: 3.437822e-04	ci right 3.800860e-04	k: 1544	n:4270000
MUC4   4270000 perm   7203 sec   (593 perm/sec)   p_kst 3.615925e-04   p_cons 1.035660e-01   p_joint 1.971897e-04

Joint ci ratio: 1.348388e-01	ci left: 1.841163e-04	ci right 2.109600e-04	k: 844	n:4280000
Cons ci ratio: 5.574749e-03	ci left: 1.032727e-01	ci right 1.038503e-01	k: 443242	n:4280000
KS ci ratio: 9.961437e-02	ci left: 3.436624e-04	ci right 3.799163e-04	k: 1547	n:4280000
MUC4   4280000 perm   7234 sec   (592 perm/sec)   p_kst 3.614486e-04   p_cons 1.035612e-01   p_joint 1.971963e-04

Joint ci ratio: 1.346000e-01	ci left: 1.843629e-04	ci right 2.111911e-04	k: 847	n:4290000
Cons ci ratio: 5.567966e-03	ci left: 1.032824e-01	ci right 1.038593e-01	k: 444318	n:4290000
KS ci ratio: 9.948591e-02	ci left: 3.437706e-04	ci right 3.799863e-04	k: 1551	n:4290000
MUC4   4290000 perm   7266 sec   (590 perm/sec)   p_kst 3.615385e-04   p_cons 1.035706e-01   p_joint 1.974359e-04

Joint ci ratio: 1.345208e-01	ci left: 1.841588e-04	ci right 2.109404e-04	k: 848	n:4300000
Cons ci ratio: 5.561688e-03	ci left: 1.032761e-01	ci right 1.038523e-01	k: 445325	n:4300000
KS ci ratio: 9.938991e-02	ci left: 3.436514e-04	ci right 3.798177e-04	k: 1554	n:4300000
MUC4   4300000 perm   7298 sec   (589 perm/sec)   p_kst 3.613953e-04   p_cons 1.035640e-01   p_joint 1.972093e-04

Joint ci ratio: 1.343626e-01	ci left: 1.841800e-04	ci right 2.109306e-04	k: 850	n:4310000
Cons ci ratio: 5.555465e-03	ci left: 1.032687e-01	ci right 1.038442e-01	k: 446327	n:4310000
KS ci ratio: 9.926231e-02	ci left: 3.437591e-04	ci right 3.798875e-04	k: 1558	n:4310000
MUC4   4310000 perm   7329 sec   (588 perm/sec)   p_kst 3.614849e-04   p_cons 1.035561e-01   p_joint 1.972158e-04

Joint ci ratio: 1.342837e-01	ci left: 1.839774e-04	ci right 2.106816e-04	k: 851	n:4320000
Cons ci ratio: 5.548531e-03	ci left: 1.032857e-01	ci right 1.038606e-01	k: 447435	n:4320000
KS ci ratio: 9.919872e-02	ci left: 3.434148e-04	ci right 3.794826e-04	k: 1560	n:4320000
MUC4   4320000 perm   7361 sec   (587 perm/sec)   p_kst 3.611111e-04   p_cons 1.035729e-01   p_joint 1.969907e-04

Joint ci ratio: 1.342838e-01	ci left: 1.835525e-04	ci right 2.101950e-04	k: 851	n:4330000
Cons ci ratio: 5.542201e-03	ci left: 1.032834e-01	ci right 1.038576e-01	k: 448459	n:4330000
KS ci ratio: 9.919877e-02	ci left: 3.426217e-04	ci right 3.786062e-04	k: 1560	n:4330000
MUC4   4330000 perm   7392 sec   (586 perm/sec)   p_kst 3.602771e-04   p_cons 1.035702e-01   p_joint 1.965358e-04

Joint ci ratio: 1.341264e-01	ci left: 1.835749e-04	ci right 2.101870e-04	k: 853	n:4340000
Cons ci ratio: 5.535783e-03	ci left: 1.032847e-01	ci right 1.038582e-01	k: 449499	n:4340000
KS ci ratio: 9.904026e-02	ci left: 3.429558e-04	ci right 3.789145e-04	k: 1565	n:4340000
MUC4   4340000 perm   7425 sec   (585 perm/sec)   p_kst 3.605991e-04   p_cons 1.035712e-01   p_joint 1.965438e-04

Joint ci ratio: 1.340480e-01	ci left: 1.833750e-04	ci right 2.099414e-04	k: 854	n:4350000
Cons ci ratio: 5.529537e-03	ci left: 1.032809e-01	ci right 1.038538e-01	k: 450517	n:4350000
KS ci ratio: 9.894554e-02	ci left: 3.428400e-04	ci right 3.787501e-04	k: 1568	n:4350000
MUC4   4350000 perm   7457 sec   (583 perm/sec)   p_kst 3.604598e-04   p_cons 1.035671e-01   p_joint 1.963218e-04

Joint ci ratio: 1.338915e-01	ci left: 1.833978e-04	ci right 2.099340e-04	k: 856	n:4360000
Cons ci ratio: 5.523081e-03	ci left: 1.032850e-01	ci right 1.038573e-01	k: 451569	n:4360000
KS ci ratio: 9.875686e-02	ci left: 3.433958e-04	ci right 3.792916e-04	k: 1574	n:4360000
MUC4   4360000 perm   7490 sec   (582 perm/sec)   p_kst 3.610092e-04   p_cons 1.035709e-01   p_joint 1.963303e-04

Joint ci ratio: 1.338134e-01	ci left: 1.831993e-04	ci right 2.096901e-04	k: 857	n:4370000
Cons ci ratio: 5.516899e-03	ci left: 1.032806e-01	ci right 1.038522e-01	k: 452584	n:4370000
KS ci ratio: 9.872556e-02	ci left: 3.428331e-04	ci right 3.786581e-04	k: 1575	n:4370000
MUC4   4370000 perm   7523 sec   (581 perm/sec)   p_kst 3.604119e-04   p_cons 1.035661e-01   p_joint 1.961098e-04

Joint ci ratio: 1.338135e-01	ci left: 1.827810e-04	ci right 2.092113e-04	k: 857	n:4380000
Cons ci ratio: 5.510521e-03	ci left: 1.032835e-01	ci right 1.038545e-01	k: 453631	n:4380000
KS ci ratio: 9.866299e-02	ci left: 3.424958e-04	ci right 3.782615e-04	k: 1577	n:4380000
MUC4   4380000 perm   7555 sec   (580 perm/sec)   p_kst 3.600457e-04   p_cons 1.035687e-01   p_joint 1.956621e-04

Joint ci ratio: 1.337356e-01	ci left: 1.825848e-04	ci right 2.089702e-04	k: 858	n:4390000
Cons ci ratio: 5.504124e-03	ci left: 1.032878e-01	ci right 1.038581e-01	k: 454684	n:4390000
KS ci ratio: 9.856934e-02	ci left: 3.423821e-04	ci right 3.781001e-04	k: 1580	n:4390000
MUC4   4390000 perm   7588 sec   (579 perm/sec)   p_kst 3.599089e-04   p_cons 1.035727e-01   p_joint 1.954442e-04

Joint ci ratio: 1.335026e-01	ci left: 1.828289e-04	ci right 2.091998e-04	k: 861	n:4400000
Cons ci ratio: 5.497850e-03	ci left: 1.032886e-01	ci right 1.038583e-01	k: 455722	n:4400000
KS ci ratio: 9.841383e-02	ci left: 3.427123e-04	ci right 3.784051e-04	k: 1585	n:4400000
MUC4   4400000 perm   7621 sec   (577 perm/sec)   p_kst 3.602273e-04   p_cons 1.035732e-01   p_joint 1.956818e-04

Joint ci ratio: 1.334253e-01	ci left: 1.826335e-04	ci right 2.089598e-04	k: 862	n:4410000
Cons ci ratio: 5.491645e-03	ci left: 1.032879e-01	ci right 1.038569e-01	k: 456753	n:4410000
KS ci ratio: 9.835186e-02	ci left: 3.423776e-04	ci right 3.780117e-04	k: 1587	n:4410000
MUC4   4410000 perm   7654 sec   (576 perm/sec)   p_kst 3.598639e-04   p_cons 1.035721e-01   p_joint 1.954649e-04

Joint ci ratio: 1.332709e-01	ci left: 1.826577e-04	ci right 2.089546e-04	k: 864	n:4420000
Cons ci ratio: 5.485441e-03	ci left: 1.032878e-01	ci right 1.038562e-01	k: 457787	n:4420000
KS ci ratio: 9.822822e-02	ci left: 3.424857e-04	ci right 3.780837e-04	k: 1591	n:4420000
MUC4   4420000 perm   7687 sec   (575 perm/sec)   p_kst 3.599548e-04   p_cons 1.035717e-01   p_joint 1.954751e-04

Joint ci ratio: 1.331940e-01	ci left: 1.824636e-04	ci right 2.087162e-04	k: 865	n:4430000
Cons ci ratio: 5.478791e-03	ci left: 1.033035e-01	ci right 1.038713e-01	k: 458891	n:4430000
KS ci ratio: 9.819741e-02	ci left: 3.419328e-04	ci right 3.774615e-04	k: 1592	n:4430000
MUC4   4430000 perm   7720 sec   (574 perm/sec)   p_kst 3.593679e-04   p_cons 1.035871e-01   p_joint 1.952596e-04

Joint ci ratio: 1.331172e-01	ci left: 1.822704e-04	ci right 2.084788e-04	k: 866	n:4440000
Cons ci ratio: 5.472538e-03	ci left: 1.033066e-01	ci right 1.038737e-01	k: 459939	n:4440000
KS ci ratio: 9.816663e-02	ci left: 3.413823e-04	ci right 3.768421e-04	k: 1593	n:4440000
MUC4   4440000 perm   7753 sec   (573 perm/sec)   p_kst 3.587838e-04   p_cons 1.035899e-01   p_joint 1.950450e-04

Joint ci ratio: 1.330405e-01	ci left: 1.820780e-04	ci right 2.082425e-04	k: 867	n:4450000
Cons ci ratio: 5.466332e-03	ci left: 1.033087e-01	ci right 1.038752e-01	k: 460983	n:4450000
KS ci ratio: 9.810512e-02	ci left: 3.410536e-04	ci right 3.764558e-04	k: 1595	n:4450000
MUC4   4450000 perm   7786 sec   (572 perm/sec)   p_kst 3.584270e-04   p_cons 1.035917e-01   p_joint 1.948315e-04

Joint ci ratio: 1.326589e-01	ci left: 1.827536e-04	ci right 2.089339e-04	k: 872	n:4460000
Cons ci ratio: 5.460127e-03	ci left: 1.033115e-01	ci right 1.038774e-01	k: 462030	n:4460000
KS ci ratio: 9.792121e-02	ci left: 3.416012e-04	ci right 3.769900e-04	k: 1601	n:4460000
MUC4   4460000 perm   7819 sec   (570 perm/sec)   p_kst 3.589686e-04   p_cons 1.035942e-01   p_joint 1.955157e-04

Joint ci ratio: 1.324315e-01	ci left: 1.829936e-04	ci right 2.091599e-04	k: 875	n:4470000
Cons ci ratio: 5.454515e-03	ci left: 1.032948e-01	ci right 1.038600e-01	k: 462990	n:4470000
KS ci ratio: 9.773832e-02	ci left: 3.421465e-04	ci right 3.775217e-04	k: 1607	n:4470000
MUC4   4470000 perm   7853 sec   (569 perm/sec)   p_kst 3.595078e-04   p_cons 1.035772e-01   p_joint 1.957494e-04

Joint ci ratio: 1.324316e-01	ci left: 1.825852e-04	ci right 2.086930e-04	k: 875	n:4480000
Cons ci ratio: 5.448213e-03	ci left: 1.033023e-01	ci right 1.038669e-01	k: 464058	n:4480000
KS ci ratio: 9.764728e-02	ci left: 3.420360e-04	ci right 3.773650e-04	k: 1610	n:4480000
MUC4   4480000 perm   7886 sec   (568 perm/sec)   p_kst 3.593750e-04   p_cons 1.035844e-01   p_joint 1.953125e-04

Joint ci ratio: 1.322806e-01	ci left: 1.826092e-04	ci right 2.086884e-04	k: 877	n:4490000
Cons ci ratio: 5.442246e-03	ci left: 1.032991e-01	ci right 1.038631e-01	k: 465078	n:4490000
KS ci ratio: 9.746592e-02	ci left: 3.425779e-04	ci right 3.778934e-04	k: 1616	n:4490000
MUC4   4490000 perm   7919 sec   (567 perm/sec)   p_kst 3.599109e-04   p_cons 1.035808e-01   p_joint 1.953229e-04

Joint ci ratio: 1.322807e-01	ci left: 1.822034e-04	ci right 2.082246e-04	k: 877	n:4500000
Cons ci ratio: 5.436364e-03	ci left: 1.032937e-01	ci right 1.038570e-01	k: 466088	n:4500000
KS ci ratio: 9.734559e-02	ci left: 3.426839e-04	ci right 3.779642e-04	k: 1620	n:4500000
MUC4   4500000 perm   7953 sec   (566 perm/sec)   p_kst 3.600000e-04   p_cons 1.035751e-01   p_joint 1.948889e-04

Joint ci ratio: 1.322054e-01	ci left: 1.820138e-04	ci right 2.079920e-04	k: 878	n:4510000
Cons ci ratio: 5.430111e-03	ci left: 1.033016e-01	ci right 1.038643e-01	k: 467158	n:4510000
KS ci ratio: 9.722570e-02	ci left: 3.427894e-04	ci right 3.780346e-04	k: 1624	n:4510000
MUC4   4510000 perm   7985 sec   (565 perm/sec)   p_kst 3.600887e-04   p_cons 1.035827e-01   p_joint 1.946785e-04

Joint ci ratio: 1.320553e-01	ci left: 1.820390e-04	ci right 2.079889e-04	k: 880	n:4520000
Cons ci ratio: 5.423855e-03	ci left: 1.033104e-01	ci right 1.038724e-01	k: 468232	n:4520000
KS ci ratio: 9.710625e-02	ci left: 3.428945e-04	ci right 3.781047e-04	k: 1628	n:4520000
MUC4   4520000 perm   8019 sec   (564 perm/sec)   p_kst 3.601770e-04   p_cons 1.035912e-01   p_joint 1.946903e-04

Joint ci ratio: 1.320553e-01	ci left: 1.816371e-04	ci right 2.075298e-04	k: 880	n:4530000
Cons ci ratio: 5.418044e-03	ci left: 1.033045e-01	ci right 1.038660e-01	k: 469240	n:4530000
KS ci ratio: 9.707649e-02	ci left: 3.423529e-04	ci right 3.774962e-04	k: 1629	n:4530000
MUC4   4530000 perm   8052 sec   (563 perm/sec)   p_kst 3.596026e-04   p_cons 1.035850e-01   p_joint 1.942605e-04

Joint ci ratio: 1.319057e-01	ci left: 1.816630e-04	ci right 2.075278e-04	k: 882	n:4540000
Cons ci ratio: 5.412054e-03	ci left: 1.033055e-01	ci right 1.038663e-01	k: 470279	n:4540000
KS ci ratio: 9.695759e-02	ci left: 3.424585e-04	ci right 3.775671e-04	k: 1633	n:4540000
MUC4   4540000 perm   8086 sec   (561 perm/sec)   p_kst 3.596916e-04   p_cons 1.035857e-01   p_joint 1.942731e-04

Joint ci ratio: 1.316821e-01	ci left: 1.819013e-04	ci right 2.077527e-04	k: 885	n:4550000
Cons ci ratio: 5.406365e-03	ci left: 1.032969e-01	ci right 1.038570e-01	k: 471274	n:4550000
KS ci ratio: 9.683913e-02	ci left: 3.425637e-04	ci right 3.776377e-04	k: 1637	n:4550000
MUC4   4550000 perm   8120 sec   (560 perm/sec)   p_kst 3.597802e-04   p_cons 1.035767e-01   p_joint 1.945055e-04

Joint ci ratio: 1.316079e-01	ci left: 1.817145e-04	ci right 2.075236e-04	k: 886	n:4560000
Cons ci ratio: 5.400209e-03	ci left: 1.033049e-01	ci right 1.038645e-01	k: 472345	n:4560000
KS ci ratio: 9.678008e-02	ci left: 3.422404e-04	ci right 3.772588e-04	k: 1639	n:4560000
MUC4   4560000 perm   8154 sec   (559 perm/sec)   p_kst 3.594298e-04   p_cons 1.035844e-01   p_joint 1.942982e-04

Joint ci ratio: 1.313121e-01	ci left: 1.821634e-04	ci right 2.079736e-04	k: 890	n:4570000
Cons ci ratio: 5.394385e-03	ci left: 1.033022e-01	ci right 1.038611e-01	k: 473367	n:4570000
KS ci ratio: 9.663287e-02	ci left: 3.425592e-04	ci right 3.775538e-04	k: 1644	n:4570000
MUC4   4570000 perm   8187 sec   (558 perm/sec)   p_kst 3.597374e-04   p_cons 1.035814e-01   p_joint 1.947484e-04

Joint ci ratio: 1.311650e-01	ci left: 1.821880e-04	ci right 2.079705e-04	k: 892	n:4580000
Cons ci ratio: 5.388745e-03	ci left: 1.032938e-01	ci right 1.038521e-01	k: 474363	n:4580000
KS ci ratio: 9.651560e-02	ci left: 3.426635e-04	ci right 3.776239e-04	k: 1648	n:4580000
MUC4   4580000 perm   8221 sec   (557 perm/sec)   p_kst 3.598253e-04   p_cons 1.035727e-01   p_joint 1.947598e-04

Joint ci ratio: 1.309452e-01	ci left: 1.824232e-04	ci right 2.081924e-04	k: 895	n:4590000
Cons ci ratio: 5.382289e-03	ci left: 1.033142e-01	ci right 1.038719e-01	k: 475491	n:4590000
KS ci ratio: 9.642793e-02	ci left: 3.425548e-04	ci right 3.774706e-04	k: 1651	n:4590000
MUC4   4590000 perm   8255 sec   (556 perm/sec)   p_kst 3.596950e-04   p_cons 1.035928e-01   p_joint 1.949891e-04

Joint ci ratio: 1.307265e-01	ci left: 1.826575e-04	ci right 2.084133e-04	k: 898	n:4600000
Cons ci ratio: 5.376423e-03	ci left: 1.033149e-01	ci right 1.038721e-01	k: 476529	n:4600000
KS ci ratio: 9.631139e-02	ci left: 3.426587e-04	ci right 3.775405e-04	k: 1655	n:4600000
MUC4   4600000 perm   8290 sec   (555 perm/sec)   p_kst 3.597826e-04   p_cons 1.035933e-01   p_joint 1.952174e-04

Joint ci ratio: 1.304366e-01	ci left: 1.831006e-04	ci right 2.088572e-04	k: 902	n:4610000
Cons ci ratio: 5.370651e-03	ci left: 1.033131e-01	ci right 1.038696e-01	k: 477555	n:4610000
KS ci ratio: 9.605068e-02	ci left: 3.438207e-04	ci right 3.787207e-04	k: 1664	n:4610000
MUC4   4610000 perm   8323 sec   (554 perm/sec)   p_kst 3.609544e-04   p_cons 1.035911e-01   p_joint 1.956616e-04

Joint ci ratio: 1.304367e-01	ci left: 1.827043e-04	ci right 2.084052e-04	k: 902	n:4620000
Cons ci ratio: 5.364791e-03	ci left: 1.033149e-01	ci right 1.038709e-01	k: 478598	n:4620000
KS ci ratio: 9.596427e-02	ci left: 3.437103e-04	ci right 3.785659e-04	k: 1667	n:4620000
MUC4   4620000 perm   8358 sec   (553 perm/sec)   p_kst 3.608225e-04   p_cons 1.035926e-01   p_joint 1.952381e-04

Joint ci ratio: 1.301487e-01	ci left: 1.831454e-04	ci right 2.088471e-04	k: 906	n:4630000
Cons ci ratio: 5.359118e-03	ci left: 1.033109e-01	ci right 1.038663e-01	k: 479614	n:4630000
KS ci ratio: 9.587810e-02	ci left: 3.436003e-04	ci right 3.784118e-04	k: 1670	n:4630000
MUC4   4630000 perm   8391 sec   (552 perm/sec)   p_kst 3.606911e-04   p_cons 1.035883e-01   p_joint 1.956803e-04

Joint ci ratio: 1.300054e-01	ci left: 1.831677e-04	ci right 2.088421e-04	k: 908	n:4640000
Cons ci ratio: 5.353464e-03	ci left: 1.033069e-01	ci right 1.038617e-01	k: 480630	n:4640000
KS ci ratio: 9.582079e-02	ci left: 3.432805e-04	ci right 3.780376e-04	k: 1672	n:4640000
MUC4   4640000 perm   8426 sec   (551 perm/sec)   p_kst 3.603448e-04   p_cons 1.035841e-01   p_joint 1.956897e-04

Joint ci ratio: 1.297914e-01	ci left: 1.833980e-04	ci right 2.090591e-04	k: 911	n:4650000
Cons ci ratio: 5.347685e-03	ci left: 1.033079e-01	ci right 1.038621e-01	k: 481669	n:4650000
KS ci ratio: 9.567791e-02	ci left: 3.435918e-04	ci right 3.783256e-04	k: 1677	n:4650000
MUC4   4650000 perm   8460 sec   (550 perm/sec)   p_kst 3.606452e-04   p_cons 1.035847e-01   p_joint 1.959140e-04

Joint ci ratio: 1.295077e-01	ci left: 1.838350e-04	ci right 2.094966e-04	k: 915	n:4660000
Cons ci ratio: 5.341832e-03	ci left: 1.033121e-01	ci right 1.038657e-01	k: 482723	n:4660000
KS ci ratio: 9.550728e-02	ci left: 3.441113e-04	ci right 3.788321e-04	k: 1683	n:4660000
MUC4   4660000 perm   8495 sec   (549 perm/sec)   p_kst 3.611588e-04   p_cons 1.035886e-01   p_joint 1.963519e-04

Joint ci ratio: 1.293665e-01	ci left: 1.838558e-04	ci right 2.094901e-04	k: 917	n:4670000
Cons ci ratio: 5.335967e-03	ci left: 1.033173e-01	ci right 1.038703e-01	k: 483782	n:4670000
KS ci ratio: 9.545064e-02	ci left: 3.437924e-04	ci right 3.784594e-04	k: 1685	n:4670000
MUC4   4670000 perm   8529 sec   (548 perm/sec)   p_kst 3.608137e-04   p_cons 1.035936e-01   p_joint 1.963597e-04

Joint ci ratio: 1.292962e-01	ci left: 1.836697e-04	ci right 2.092631e-04	k: 918	n:4680000
Cons ci ratio: 5.330496e-03	ci left: 1.033095e-01	ci right 1.038619e-01	k: 484780	n:4680000
KS ci ratio: 9.542237e-02	ci left: 3.432664e-04	ci right 3.778695e-04	k: 1686	n:4680000
MUC4   4680000 perm   8563 sec   (547 perm/sec)   p_kst 3.602564e-04   p_cons 1.035855e-01   p_joint 1.961538e-04

Joint ci ratio: 1.291557e-01	ci left: 1.836907e-04	ci right 2.092571e-04	k: 920	n:4690000
Cons ci ratio: 5.324803e-03	ci left: 1.033101e-01	ci right 1.038618e-01	k: 485817	n:4690000
KS ci ratio: 9.530944e-02	ci left: 3.433670e-04	ci right 3.779370e-04	k: 1690	n:4690000
MUC4   4690000 perm   8598 sec   (545 perm/sec)   p_kst 3.603412e-04   p_cons 1.035857e-01   p_joint 1.961620e-04

Joint ci ratio: 1.290856e-01	ci left: 1.835058e-04	ci right 2.090315e-04	k: 921	n:4700000
Cons ci ratio: 5.319190e-03	ci left: 1.033085e-01	ci right 1.038597e-01	k: 486844	n:4700000
KS ci ratio: 9.525314e-02	ci left: 3.430519e-04	ci right 3.775685e-04	k: 1692	n:4700000
MUC4   4700000 perm   8632 sec   (544 perm/sec)   p_kst 3.600000e-04   p_cons 1.035838e-01   p_joint 1.959574e-04

Joint ci ratio: 1.288761e-01	ci left: 1.837325e-04	ci right 2.092452e-04	k: 924	n:4710000
Cons ci ratio: 5.313849e-03	ci left: 1.032980e-01	ci right 1.038486e-01	k: 487829	n:4710000
KS ci ratio: 9.508478e-02	ci left: 3.435671e-04	ci right 3.780711e-04	k: 1698	n:4710000
MUC4   4710000 perm   8667 sec   (543 perm/sec)   p_kst 3.605096e-04   p_cons 1.035730e-01   p_joint 1.961783e-04

Joint ci ratio: 1.286676e-01	ci left: 1.839584e-04	ci right 2.094580e-04	k: 927	n:4720000
Cons ci ratio: 5.308542e-03	ci left: 1.032869e-01	ci right 1.038369e-01	k: 488811	n:4720000
KS ci ratio: 9.494516e-02	ci left: 3.438733e-04	ci right 3.783546e-04	k: 1703	n:4720000
MUC4   4720000 perm   8702 sec   (542 perm/sec)   p_kst 3.608051e-04   p_cons 1.035617e-01   p_joint 1.963983e-04

Joint ci ratio: 1.285292e-01	ci left: 1.839787e-04	ci right 2.094516e-04	k: 929	n:4730000
Cons ci ratio: 5.303076e-03	ci left: 1.032820e-01	ci right 1.038314e-01	k: 489822	n:4730000
KS ci ratio: 9.480615e-02	ci left: 3.441783e-04	ci right 3.786368e-04	k: 1708	n:4730000
MUC4   4730000 perm   8737 sec   (541 perm/sec)   p_kst 3.610994e-04   p_cons 1.035564e-01   p_joint 1.964059e-04

Joint ci ratio: 1.283224e-01	ci left: 1.842032e-04	ci right 2.096629e-04	k: 932	n:4740000
Cons ci ratio: 5.297519e-03	ci left: 1.032809e-01	ci right 1.038297e-01	k: 490851	n:4740000
KS ci ratio: 9.472306e-02	ci left: 3.440701e-04	ci right 3.784859e-04	k: 1711	n:4740000
MUC4   4740000 perm   8772 sec   (540 perm/sec)   p_kst 3.609705e-04   p_cons 1.035551e-01   p_joint 1.966245e-04

Joint ci ratio: 1.281166e-01	ci left: 1.844267e-04	ci right 2.098733e-04	k: 935	n:4750000
Cons ci ratio: 5.291961e-03	ci left: 1.032805e-01	ci right 1.038287e-01	k: 491883	n:4750000
KS ci ratio: 9.461259e-02	ci left: 3.441680e-04	ci right 3.785512e-04	k: 1715	n:4750000
MUC4   4750000 perm   8807 sec   (539 perm/sec)   p_kst 3.610526e-04   p_cons 1.035543e-01   p_joint 1.968421e-04

Joint ci ratio: 1.278437e-01	ci left: 1.848527e-04	ci right 2.102996e-04	k: 939	n:4760000
Cons ci ratio: 5.286271e-03	ci left: 1.032852e-01	ci right 1.038329e-01	k: 492940	n:4760000
KS ci ratio: 9.450250e-02	ci left: 3.442654e-04	ci right 3.786161e-04	k: 1719	n:4760000
MUC4   4760000 perm   8842 sec   (538 perm/sec)   p_kst 3.611345e-04   p_cons 1.035588e-01   p_joint 1.972689e-04

Joint ci ratio: 1.276401e-01	ci left: 1.850740e-04	ci right 2.105078e-04	k: 942	n:4770000
Cons ci ratio: 5.280796e-03	ci left: 1.032831e-01	ci right 1.038302e-01	k: 493964	n:4770000
KS ci ratio: 9.436543e-02	ci left: 3.445671e-04	ci right 3.788953e-04	k: 1724	n:4770000
MUC4   4770000 perm   8877 sec   (537 perm/sec)   p_kst 3.614256e-04   p_cons 1.035564e-01   p_joint 1.974843e-04

Joint ci ratio: 1.273703e-01	ci left: 1.854969e-04	ci right 2.109309e-04	k: 946	n:4780000
Cons ci ratio: 5.275368e-03	ci left: 1.032799e-01	ci right 1.038264e-01	k: 494983	n:4780000
KS ci ratio: 9.425621e-02	ci left: 3.446633e-04	ci right 3.789592e-04	k: 1728	n:4780000
MUC4   4780000 perm   8913 sec   (536 perm/sec)   p_kst 3.615063e-04   p_cons 1.035529e-01   p_joint 1.979079e-04

Joint ci ratio: 1.273031e-01	ci left: 1.853118e-04	ci right 2.107059e-04	k: 947	n:4790000
Cons ci ratio: 5.269618e-03	ci left: 1.032887e-01	ci right 1.038346e-01	k: 496059	n:4790000
KS ci ratio: 9.414736e-02	ci left: 3.447592e-04	ci right 3.790228e-04	k: 1732	n:4790000
MUC4   4790000 perm   8947 sec   (535 perm/sec)   p_kst 3.615866e-04   p_cons 1.035614e-01   p_joint 1.977035e-04

Joint ci ratio: 1.271690e-01	ci left: 1.853291e-04	ci right 2.106969e-04	k: 949	n:4800000
Cons ci ratio: 5.264165e-03	ci left: 1.032876e-01	ci right 1.038329e-01	k: 497088	n:4800000
KS ci ratio: 9.401183e-02	ci left: 3.450581e-04	ci right 3.792993e-04	k: 1737	n:4800000
MUC4   4800000 perm   8982 sec   (534 perm/sec)   p_kst 3.618750e-04   p_cons 1.035600e-01   p_joint 1.977083e-04

Joint ci ratio: 1.271690e-01	ci left: 1.849438e-04	ci right 2.102589e-04	k: 949	n:4810000
Cons ci ratio: 5.258747e-03	ci left: 1.032859e-01	ci right 1.038306e-01	k: 498114	n:4810000
KS ci ratio: 9.393080e-02	ci left: 3.449498e-04	ci right 3.791491e-04	k: 1740	n:4810000
MUC4   4810000 perm   9018 sec   (533 perm/sec)   p_kst 3.617464e-04   p_cons 1.035580e-01   p_joint 1.972973e-04

Joint ci ratio: 1.270354e-01	ci left: 1.849619e-04	ci right 2.102508e-04	k: 951	n:4820000
Cons ci ratio: 5.253257e-03	ci left: 1.032873e-01	ci right 1.038315e-01	k: 499155	n:4820000
KS ci ratio: 9.387691e-02	ci left: 3.446393e-04	ci right 3.787872e-04	k: 1742	n:4820000
MUC4   4820000 perm   9053 sec   (532 perm/sec)   p_kst 3.614108e-04   p_cons 1.035591e-01   p_joint 1.973029e-04

Joint ci ratio: 1.270354e-01	ci left: 1.845789e-04	ci right 2.098155e-04	k: 951	n:4830000
Cons ci ratio: 5.247866e-03	ci left: 1.032858e-01	ci right 1.038294e-01	k: 500182	n:4830000
KS ci ratio: 9.385002e-02	ci left: 3.441279e-04	ci right 3.782148e-04	k: 1743	n:4830000
MUC4   4830000 perm   9089 sec   (531 perm/sec)   p_kst 3.608696e-04   p_cons 1.035573e-01   p_joint 1.968944e-04

Joint ci ratio: 1.269687e-01	ci left: 1.843976e-04	ci right 2.095951e-04	k: 952	n:4840000
Cons ci ratio: 5.242311e-03	ci left: 1.032907e-01	ci right 1.038338e-01	k: 501240	n:4840000
KS ci ratio: 9.371576e-02	ci left: 3.444258e-04	ci right 3.784907e-04	k: 1748	n:4840000
MUC4   4840000 perm   9125 sec   (530 perm/sec)   p_kst 3.611570e-04   p_cons 1.035620e-01   p_joint 1.966942e-04

Joint ci ratio: 1.269022e-01	ci left: 1.842170e-04	ci right 2.093757e-04	k: 953	n:4850000
Cons ci ratio: 5.237204e-03	ci left: 1.032803e-01	ci right 1.038228e-01	k: 502224	n:4850000
KS ci ratio: 9.358208e-02	ci left: 3.447224e-04	ci right 3.787653e-04	k: 1753	n:4850000
MUC4   4850000 perm   9161 sec   (529 perm/sec)   p_kst 3.614433e-04   p_cons 1.035513e-01   p_joint 1.964948e-04

Joint ci ratio: 1.267694e-01	ci left: 1.842364e-04	ci right 2.093695e-04	k: 955	n:4860000
Cons ci ratio: 5.231753e-03	ci left: 1.032828e-01	ci right 1.038247e-01	k: 503270	n:4860000
KS ci ratio: 9.352879e-02	ci left: 3.444150e-04	ci right 3.784071e-04	k: 1755	n:4860000
MUC4   4860000 perm   9197 sec   (528 perm/sec)   p_kst 3.611111e-04   p_cons 1.035535e-01   p_joint 1.965021e-04

Joint ci ratio: 1.267031e-01	ci left: 1.840570e-04	ci right 2.091514e-04	k: 956	n:4870000
Cons ci ratio: 5.226318e-03	ci left: 1.032852e-01	ci right 1.038266e-01	k: 504316	n:4870000
KS ci ratio: 9.350219e-02	ci left: 3.439083e-04	ci right 3.778403e-04	k: 1756	n:4870000
MUC4   4870000 perm   9233 sec   (527 perm/sec)   p_kst 3.605749e-04   p_cons 1.035556e-01   p_joint 1.963039e-04

Joint ci ratio: 1.265050e-01	ci left: 1.842751e-04	ci right 2.093570e-04	k: 959	n:4880000
Cons ci ratio: 5.220958e-03	ci left: 1.032855e-01	ci right 1.038264e-01	k: 505352	n:4880000
KS ci ratio: 9.326358e-02	ci left: 3.450048e-04	ci right 3.789533e-04	k: 1765	n:4880000
MUC4   4880000 perm   9269 sec   (526 perm/sec)   p_kst 3.616803e-04   p_cons 1.035557e-01   p_joint 1.965164e-04

Joint ci ratio: 1.264392e-01	ci left: 1.840963e-04	ci right 2.091398e-04	k: 960	n:4890000
Cons ci ratio: 5.215609e-03	ci left: 1.032861e-01	ci right 1.038264e-01	k: 506389	n:4890000
KS ci ratio: 9.318447e-02	ci left: 3.448984e-04	ci right 3.788062e-04	k: 1768	n:4890000
MUC4   4890000 perm   9305 sec   (526 perm/sec)   p_kst 3.615542e-04   p_cons 1.035560e-01   p_joint 1.963190e-04

Joint ci ratio: 1.262423e-01	ci left: 1.843135e-04	ci right 2.093446e-04	k: 963	n:4900000
Cons ci ratio: 5.210333e-03	ci left: 1.032846e-01	ci right 1.038244e-01	k: 507416	n:4900000
KS ci ratio: 9.307929e-02	ci left: 3.449919e-04	ci right 3.788684e-04	k: 1772	n:4900000
MUC4   4900000 perm   9341 sec   (525 perm/sec)   p_kst 3.616327e-04   p_cons 1.035543e-01   p_joint 1.965306e-04

Joint ci ratio: 1.261769e-01	ci left: 1.841353e-04	ci right 2.091283e-04	k: 964	n:4910000
Cons ci ratio: 5.205010e-03	ci left: 1.032854e-01	ci right 1.038246e-01	k: 508454	n:4910000
KS ci ratio: 9.305308e-02	ci left: 3.444882e-04	ci right 3.783052e-04	k: 1773	n:4910000
MUC4   4910000 perm   9377 sec   (524 perm/sec)   p_kst 3.610998e-04   p_cons 1.035548e-01   p_joint 1.963340e-04

Joint ci ratio: 1.259812e-01	ci left: 1.843516e-04	ci right 2.093323e-04	k: 967	n:4920000
Cons ci ratio: 5.199966e-03	ci left: 1.032769e-01	ci right 1.038155e-01	k: 509446	n:4920000
KS ci ratio: 9.297450e-02	ci left: 3.443836e-04	ci right 3.781602e-04	k: 1776	n:4920000
MUC4   4920000 perm   9414 sec   (523 perm/sec)   p_kst 3.609756e-04   p_cons 1.035459e-01   p_joint 1.965447e-04

Joint ci ratio: 1.259812e-01	ci left: 1.839776e-04	ci right 2.089077e-04	k: 967	n:4930000
Cons ci ratio: 5.194618e-03	ci left: 1.032797e-01	ci right 1.038178e-01	k: 510494	n:4930000
KS ci ratio: 9.297454e-02	ci left: 3.436850e-04	ci right 3.773932e-04	k: 1776	n:4930000
MUC4   4930000 perm   9450 sec   (522 perm/sec)   p_kst 3.602434e-04   p_cons 1.035485e-01   p_joint 1.961460e-04

Joint ci ratio: 1.256570e-01	ci left: 1.845855e-04	ci right 2.095287e-04	k: 972	n:4940000
Cons ci ratio: 5.189344e-03	ci left: 1.032804e-01	ci right 1.038180e-01	k: 511532	n:4940000
KS ci ratio: 9.279192e-02	ci left: 3.443734e-04	ci right 3.780791e-04	k: 1783	n:4940000
MUC4   4940000 perm   9487 sec   (521 perm/sec)   p_kst 3.609312e-04   p_cons 1.035490e-01   p_joint 1.967611e-04

Joint ci ratio: 1.255281e-01	ci left: 1.846040e-04	ci right 2.095222e-04	k: 974	n:4950000
Cons ci ratio: 5.184283e-03	ci left: 1.032742e-01	ci right 1.038111e-01	k: 512535	n:4950000
KS ci ratio: 9.268806e-02	ci left: 3.444670e-04	ci right 3.781421e-04	k: 1787	n:4950000
MUC4   4950000 perm   9523 sec   (520 perm/sec)   p_kst 3.610101e-04   p_cons 1.035424e-01   p_joint 1.967677e-04

Joint ci ratio: 1.253995e-01	ci left: 1.846223e-04	ci right 2.095156e-04	k: 976	n:4960000
Cons ci ratio: 5.179163e-03	ci left: 1.032705e-01	ci right 1.038070e-01	k: 513551	n:4960000
KS ci ratio: 9.258456e-02	ci left: 3.445603e-04	ci right 3.782049e-04	k: 1791	n:4960000
MUC4   4960000 perm   9559 sec   (519 perm/sec)   p_kst 3.610887e-04   p_cons 1.035385e-01   p_joint 1.967742e-04

Joint ci ratio: 1.250799e-01	ci left: 1.852254e-04	ci right 2.101316e-04	k: 981	n:4970000
Cons ci ratio: 5.173835e-03	ci left: 1.032749e-01	ci right 1.038108e-01	k: 514607	n:4970000
KS ci ratio: 9.240422e-02	ci left: 3.452429e-04	ci right 3.788849e-04	k: 1798	n:4970000
MUC4   4970000 perm   9595 sec   (518 perm/sec)   p_kst 3.617706e-04   p_cons 1.035427e-01   p_joint 1.973843e-04

Joint ci ratio: 1.250162e-01	ci left: 1.850480e-04	ci right 2.099167e-04	k: 982	n:4980000
Cons ci ratio: 5.168567e-03	ci left: 1.032777e-01	ci right 1.038131e-01	k: 515655	n:4980000
KS ci ratio: 9.237858e-02	ci left: 3.447458e-04	ci right 3.783296e-04	k: 1799	n:4980000
MUC4   4980000 perm   9632 sec   (517 perm/sec)   p_kst 3.612450e-04   p_cons 1.035452e-01   p_joint 1.971888e-04

Joint ci ratio: 1.248259e-01	ci left: 1.852596e-04	ci right 2.101160e-04	k: 985	n:4990000
Cons ci ratio: 5.163304e-03	ci left: 1.032809e-01	ci right 1.038157e-01	k: 516705	n:4990000
KS ci ratio: 9.225053e-02	ci left: 3.450338e-04	ci right 3.785965e-04	k: 1804	n:4990000
MUC4   4990000 perm   9668 sec   (516 perm/sec)   p_kst 3.615230e-04   p_cons 1.035481e-01   p_joint 1.973948e-04

Joint ci ratio: 1.245734e-01	ci left: 1.856641e-04	ci right 2.105208e-04	k: 989	n:5000000
Cons ci ratio: 5.158430e-03	ci left: 1.032707e-01	ci right 1.038050e-01	k: 517688	n:5000000
KS ci ratio: 9.209756e-02	ci left: 3.455161e-04	ci right 3.790670e-04	k: 1810	n:5000000
MUC4   5000000 perm   9705 sec   (515 perm/sec)   p_kst 3.620000e-04   p_cons 1.035376e-01   p_joint 1.978000e-04

Outputting figure to mutsig2_images.part000000000110/MUC4.2_3627_5000000_0.000362_0.10354_0.0001978.png
                gene_name: MUC4
               theta_stop: 0.12 
                    nperm: 5000000 
                     p_ks: 0.00036 
        ci_ks_bounds_left: 0.00035 
       ci_ks_bounds_right: 0.00038 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.00020 
     ci_joint_bounds_left: 0.00019 
    ci_joint_bounds_right: 0.00021 

Current progress: 8 percent done.
MUC16
Processing conservation and coverage...
22% 45% 68% 91% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.350447e-02	ci left: 2.670569e-01	ci right 2.846738e-01	k: 2758	n:10000
Cons ci ratio: 5.450658e-02	ci left: 3.315077e-01	ci right 3.501851e-01	k: 3408	n:10000
KS ci ratio: 7.198729e-02	ci left: 2.203995e-01	ci right 2.369589e-01	k: 2286	n:10000
MUC16   10000 perm   6 sec   (1730 perm/sec)   p_kst 2.286000e-01   p_cons 3.408000e-01   p_joint 2.758000e-01

Outputting figure to mutsig2_images.part000000000110/MUC16.10_43860_10000_0.2286_0.3408_0.2758.png
                gene_name: MUC16
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 15 percent done.
MUC17
Processing conservation and coverage...
73% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.011987e-02	ci left: 7.834036e-01	ci right 7.994263e-01	k: 7915	n:10000
Cons ci ratio: 2.820218e-02	ci left: 6.495130e-01	ci right 6.681944e-01	k: 6589	n:10000
KS ci ratio: 4.076971e-02	ci left: 4.704647e-01	ci right 4.901468e-01	k: 4803	n:10000
MUC17   10000 perm   3 sec   (3543 perm/sec)   p_kst 4.803000e-01   p_cons 6.589000e-01   p_joint 7.915000e-01

Outputting figure to mutsig2_images.part000000000110/MUC17.6_13534_10000_0.4803_0.6589_0.7915.png
                gene_name: MUC17
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 23 percent done.
MYH4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.542302e-02	ci left: 6.948436e-01	ci right 7.128375e-01	k: 7039	n:10000
Cons ci ratio: 3.650076e-03	ci left: 9.895002e-01	ci right 9.932050e-01	k: 9915	n:10000
KS ci ratio: 3.412657e-02	ci left: 5.590245e-01	ci right 5.785354e-01	k: 5688	n:10000
MYH4   10000 perm   2 sec   (5356 perm/sec)   p_kst 5.688000e-01   p_cons 9.915000e-01   p_joint 7.039000e-01

Outputting figure to mutsig2_images.part000000000110/MYH4.4_5972_10000_0.5688_0.9915_0.7039.png
                gene_name: MYH4
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 31 percent done.
MUC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.111580e-01	ci left: 1.044194e-01	ci right 1.168085e-01	k: 1105	n:10000
Cons ci ratio: 1.516905e-02	ci left: 8.630465e-01	ci right 8.763374e-01	k: 8698	n:10000
KS ci ratio: 3.805205e-01	ci left: 8.505237e-03	ci right 1.258745e-02	k: 104	n:10000
MUC2   10000 perm   2 sec   (4784 perm/sec)   p_kst 1.040000e-02   p_cons 8.698000e-01   p_joint 1.105000e-01

Joint ci ratio: 1.424100e-01	ci left: 3.389529e-02	ci right 3.914057e-02	k: 729	n:20000
Cons ci ratio: 1.125410e-02	ci left: 8.535925e-01	ci right 8.633030e-01	k: 17170	n:20000
KS ci ratio: 2.771931e-01	ci left: 8.527942e-03	ci right 1.131731e-02	k: 197	n:20000
MUC2   20000 perm   5 sec   (4360 perm/sec)   p_kst 9.850000e-03   p_cons 8.585000e-01   p_joint 3.645000e-02

Joint ci ratio: 1.032619e-01	ci left: 4.346182e-02	ci right 4.822663e-02	k: 1374	n:30000
Cons ci ratio: 9.191230e-03	ci left: 8.544372e-01	ci right 8.623599e-01	k: 25753	n:30000
KS ci ratio: 2.274923e-01	ci left: 8.684843e-03	ci right 1.094494e-02	k: 293	n:30000
MUC2   30000 perm   7 sec   (4201 perm/sec)   p_kst 9.766667e-03   p_cons 8.584333e-01   p_joint 4.580000e-02

Joint ci ratio: 8.579532e-02	ci left: 4.746806e-02	ci right 5.174763e-02	k: 1983	n:40000
Cons ci ratio: 7.945275e-03	ci left: 8.554246e-01	ci right 8.622732e-01	k: 34355	n:40000
KS ci ratio: 1.975245e-01	ci left: 8.786519e-03	ci right 1.073564e-02	k: 389	n:40000
MUC2   40000 perm   10 sec   (4076 perm/sec)   p_kst 9.725000e-03   p_cons 8.588750e-01   p_joint 4.957500e-02

Joint ci ratio: 5.178437e-02	ci left: 1.001511e-01	ci right 1.054951e-01	k: 5140	n:50000
Cons ci ratio: 7.069297e-03	ci left: 8.570689e-01	ci right 8.631692e-01	k: 43007	n:50000
KS ci ratio: 1.747807e-01	ci left: 9.089008e-03	ci right 1.084859e-02	k: 497	n:50000
MUC2   50000 perm   13 sec   (3994 perm/sec)   p_kst 9.940000e-03   p_cons 8.601400e-01   p_joint 1.028000e-01

Joint ci ratio: 7.687715e-02	ci left: 3.993439e-02	ci right 4.314349e-02	k: 2491	n:60000
Cons ci ratio: 6.712776e-03	ci left: 8.475040e-01	ci right 8.532288e-01	k: 51023	n:60000
KS ci ratio: 1.590960e-01	ci left: 9.219296e-03	ci right 1.082863e-02	k: 600	n:60000
MUC2   60000 perm   15 sec   (3899 perm/sec)   p_kst 1.000000e-02   p_cons 8.503833e-01   p_joint 4.151667e-02

Joint ci ratio: 6.661012e-02	ci left: 4.557038e-02	ci right 4.872444e-02	k: 3299	n:70000
Cons ci ratio: 6.207418e-03	ci left: 8.480239e-01	ci right 8.533185e-01	k: 59548	n:70000
KS ci ratio: 1.469947e-01	ci left: 9.317433e-03	ci right 1.080931e-02	k: 703	n:70000
MUC2   70000 perm   18 sec   (3835 perm/sec)   p_kst 1.004286e-02   p_cons 8.506857e-01   p_joint 4.712857e-02

Joint ci ratio: 6.630403e-02	ci left: 4.047278e-02	ci right 4.326057e-02	k: 3348	n:80000
Cons ci ratio: 5.810739e-03	ci left: 8.480101e-01	ci right 8.529644e-01	k: 68040	n:80000
KS ci ratio: 1.380718e-01	ci left: 9.285868e-03	ci right 1.067501e-02	k: 797	n:80000
MUC2   80000 perm   21 sec   (3776 perm/sec)   p_kst 9.962500e-03   p_cons 8.505000e-01   p_joint 4.185000e-02

Joint ci ratio: 6.577433e-02	ci left: 3.671649e-02	ci right 3.922452e-02	k: 3416	n:90000
Cons ci ratio: 5.464997e-03	ci left: 8.487797e-01	ci right 8.534420e-01	k: 76601	n:90000
KS ci ratio: 1.312691e-01	ci left: 9.166704e-03	ci right 1.046518e-02	k: 882	n:90000
MUC2   90000 perm   24 sec   (3718 perm/sec)   p_kst 9.800000e-03   p_cons 8.511222e-01   p_joint 3.795556e-02

Joint ci ratio: 6.103873e-02	ci left: 3.839966e-02	ci right 4.082714e-02	k: 3960	n:100000
Cons ci ratio: 5.189703e-03	ci left: 8.486470e-01	ci right 8.530726e-01	k: 85087	n:100000
KS ci ratio: 1.241571e-01	ci left: 9.256849e-03	ci right 1.049183e-02	k: 986	n:100000
MUC2   100000 perm   27 sec   (3670 perm/sec)   p_kst 9.860000e-03   p_cons 8.508700e-01   p_joint 3.960000e-02

Joint ci ratio: 6.033612e-02	ci left: 3.583843e-02	ci right 3.807698e-02	k: 4064	n:110000
Cons ci ratio: 4.956102e-03	ci left: 8.483424e-01	ci right 8.525664e-01	k: 93551	n:110000
KS ci ratio: 1.173841e-01	ci left: 9.446891e-03	ci right 1.063370e-02	k: 1103	n:110000
MUC2   110000 perm   30 sec   (3620 perm/sec)   p_kst 1.002727e-02   p_cons 8.504636e-01   p_joint 3.694545e-02

Joint ci ratio: 5.596741e-02	ci left: 3.817471e-02	ci right 4.038096e-02	k: 4712	n:120000
Cons ci ratio: 4.743957e-03	ci left: 8.484950e-01	ci right 8.525380e-01	k: 102063	n:120000
KS ci ratio: 1.127830e-01	ci left: 9.404239e-03	ci right 1.053630e-02	k: 1195	n:120000
MUC2   120000 perm   34 sec   (3573 perm/sec)   p_kst 9.958333e-03   p_cons 8.505250e-01   p_joint 3.926667e-02

Joint ci ratio: 4.730612e-02	ci left: 4.898118e-02	ci right 5.136201e-02	k: 6521	n:130000
Cons ci ratio: 4.554154e-03	ci left: 8.487820e-01	ci right 8.526639e-01	k: 110595	n:130000
KS ci ratio: 1.087690e-01	ci left: 9.353950e-03	ci right 1.043731e-02	k: 1285	n:130000
MUC2   130000 perm   37 sec   (3528 perm/sec)   p_kst 9.884615e-03   p_cons 8.507308e-01   p_joint 5.016154e-02

Joint ci ratio: 5.043531e-02	ci left: 4.032007e-02	ci right 4.241326e-02	k: 5790	n:140000
Cons ci ratio: 4.384701e-03	ci left: 8.490736e-01	ci right 8.528118e-01	k: 119133	n:140000
KS ci ratio: 1.051551e-01	ci left: 9.311460e-03	ci right 1.035185e-02	k: 1375	n:140000
MUC2   140000 perm   40 sec   (3486 perm/sec)   p_kst 9.821429e-03   p_cons 8.509500e-01   p_joint 4.135714e-02

Joint ci ratio: 4.689650e-02	ci left: 4.346197e-02	ci right 4.555569e-02	k: 6675	n:150000
Cons ci ratio: 4.233738e-03	ci left: 8.492750e-01	ci right 8.528848e-01	k: 127663	n:150000
KS ci ratio: 1.015299e-01	ci left: 9.340140e-03	ci right 1.034561e-02	k: 1475	n:150000
MUC2   150000 perm   44 sec   (3442 perm/sec)   p_kst 9.833333e-03   p_cons 8.510867e-01   p_joint 4.450000e-02

Joint ci ratio: 4.112621e-02	ci left: 5.262517e-02	ci right 5.484104e-02	k: 8596	n:160000
Cons ci ratio: 3.937537e-03	ci left: 8.593015e-01	ci right 8.626979e-01	k: 137761	n:160000
KS ci ratio: 9.809852e-02	ci left: 9.396263e-03	ci right 1.037162e-02	k: 1580	n:160000
MUC2   160000 perm   47 sec   (3386 perm/sec)   p_kst 9.875000e-03   p_cons 8.610062e-01   p_joint 5.372500e-02

Outputting figure to mutsig2_images.part000000000110/MUC2.3_8642_160000_0.009875_0.86101_0.053725.png
                gene_name: MUC2
               theta_stop: 0.098 
                    nperm: 160000 
                     p_ks: 0.0099 
        ci_ks_bounds_left: 0.0094 
       ci_ks_bounds_right: 0.010 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.054 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.055 

Current progress: 38 percent done.
MUC21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.481309e-02	ci left: 2.072778e-01	ci right 2.234884e-01	k: 2153	n:10000
Cons ci ratio: 6.788960e-04	ci left: 9.992777e-01	ci right 9.999758e-01	k: 9998	n:10000
KS ci ratio: 2.638133e-01	ci left: 1.874721e-02	ci right 2.453613e-02	k: 215	n:10000
MUC21   10000 perm   2 sec   (6602 perm/sec)   p_kst 2.150000e-02   p_cons 9.998000e-01   p_joint 2.153000e-01

Joint ci ratio: 1.254289e-02	ci left: 8.247718e-01	ci right 8.352320e-01	k: 16601	n:20000
Cons ci ratio: 3.919902e-04	ci left: 9.995617e-01	ci right 9.999691e-01	k: 19997	n:20000
KS ci ratio: 1.856719e-01	ci left: 1.977319e-02	ci right 2.386748e-02	k: 435	n:20000
MUC21   20000 perm   3 sec   (6100 perm/sec)   p_kst 2.175000e-02   p_cons 9.998500e-01   p_joint 8.300500e-01

Joint ci ratio: 1.261702e-02	ci left: 7.580453e-01	ci right 7.677037e-01	k: 22887	n:30000
Cons ci ratio: 3.457230e-04	ci left: 9.995647e-01	ci right 9.999266e-01	k: 29994	n:30000
KS ci ratio: 1.507789e-01	ci left: 2.036990e-02	ci right 2.372355e-02	k: 660	n:30000
MUC21   30000 perm   5 sec   (5928 perm/sec)   p_kst 2.200000e-02   p_cons 9.998000e-01   p_joint 7.629000e-01

Joint ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
Cons ci ratio: 3.099226e-04	ci left: 9.995729e-01	ci right 9.998971e-01	k: 39991	n:40000
KS ci ratio: 1.303020e-01	ci left: 2.068161e-02	ci right 2.358834e-02	k: 884	n:40000
MUC21   40000 perm   7 sec   (5801 perm/sec)   p_kst 2.210000e-02   p_cons 9.997750e-01   p_joint 1

Joint ci ratio: 1.508674e-02	ci left: 5.701521e-01	ci right 5.788393e-01	k: 28725	n:50000
Cons ci ratio: 3.136345e-04	ci left: 9.995052e-01	ci right 9.998321e-01	k: 49985	n:50000
KS ci ratio: 1.178183e-01	ci left: 2.038244e-02	ci right 2.295351e-02	k: 1082	n:50000
MUC21   50000 perm   9 sec   (5667 perm/sec)   p_kst 2.164000e-02   p_cons 9.997000e-01   p_joint 5.745000e-01

Joint ci ratio: 1.395295e-02	ci left: 5.641417e-01	ci right 5.720851e-01	k: 34087	n:60000
Cons ci ratio: 2.994349e-04	ci left: 9.994852e-01	ci right 9.997964e-01	k: 59980	n:60000
KS ci ratio: 1.073674e-01	ci left: 2.056523e-02	ci right 2.291468e-02	k: 1303	n:60000
MUC21   60000 perm   11 sec   (5550 perm/sec)   p_kst 2.171667e-02   p_cons 9.996667e-01   p_joint 5.681167e-01

Joint ci ratio: 1.277681e-02	ci left: 5.698261e-01	ci right 5.771678e-01	k: 40145	n:70000
Cons ci ratio: 2.686011e-04	ci left: 9.995242e-01	ci right 9.998030e-01	k: 69978	n:70000
KS ci ratio: 9.978361e-02	ci left: 2.049399e-02	ci right 2.266021e-02	k: 1509	n:70000
MUC21   70000 perm   13 sec   (5438 perm/sec)   p_kst 2.155714e-02   p_cons 9.996857e-01   p_joint 5.735000e-01

Outputting figure to mutsig2_images.part000000000110/MUC21.2_1713_70000_0.021557_0.99969_0.5735.png
                gene_name: MUC21
               theta_stop: 0.100 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.023 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.58 

Current progress: 46 percent done.
MYCBP2
Processing conservation and coverage...
69% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.938045e-01	ci left: 3.548103e-02	ci right 4.319029e-02	k: 392	n:10000
Cons ci ratio: 1.710413e-01	ci left: 4.561810e-02	ci right 5.424649e-02	k: 498	n:10000
KS ci ratio: 4.844356e-02	ci left: 3.859978e-01	ci right 4.052631e-01	k: 3956	n:10000
MYCBP2   10000 perm   3 sec   (3811 perm/sec)   p_kst 3.956000e-01   p_cons 4.980000e-02   p_joint 3.920000e-02

Joint ci ratio: 1.395578e-01	ci left: 3.529592e-02	ci right 4.063949e-02	k: 758	n:20000
Cons ci ratio: 1.225055e-01	ci left: 4.570923e-02	ci right 5.172285e-02	k: 973	n:20000
KS ci ratio: 3.400867e-02	ci left: 3.923031e-01	ci right 4.059262e-01	k: 7982	n:20000
MYCBP2   20000 perm   6 sec   (3514 perm/sec)   p_kst 3.991000e-01   p_cons 4.865000e-02   p_joint 3.790000e-02

Joint ci ratio: 7.070555e-02	ci left: 8.963796e-02	ci right 9.624112e-02	k: 2787	n:30000
Cons ci ratio: 1.002789e-01	ci left: 4.603120e-02	ci right 5.092338e-02	k: 1453	n:30000
KS ci ratio: 2.779975e-02	ci left: 3.930198e-01	ci right 4.041332e-01	k: 11957	n:30000
MYCBP2   30000 perm   9 sec   (3403 perm/sec)   p_kst 3.985667e-01   p_cons 4.843333e-02   p_joint 9.290000e-02

Joint ci ratio: 4.840704e-02	ci left: 1.374299e-01	ci right 1.442723e-01	k: 5633	n:40000
Cons ci ratio: 8.806048e-02	ci left: 4.511775e-02	ci right 4.929830e-02	k: 1887	n:40000
KS ci ratio: 2.405644e-02	ci left: 3.941462e-01	ci right 4.037685e-01	k: 15958	n:40000
MYCBP2   40000 perm   12 sec   (3329 perm/sec)   p_kst 3.989500e-01   p_cons 4.717500e-02   p_joint 1.408250e-01

Outputting figure to mutsig2_images.part000000000110/MYCBP2.2_14369_40000_0.39895_0.047175_0.14083.png
                gene_name: MYCBP2
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.047 
      ci_cons_bounds_left: 0.045 
     ci_cons_bounds_right: 0.049 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.14 

Current progress: 54 percent done.
MYH15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.858457e-02	ci left: 8.087717e-01	ci right 8.240436e-01	k: 8165	n:10000
Cons ci ratio: 4.054989e-02	ci left: 4.731620e-01	ci right 4.928479e-01	k: 4830	n:10000
KS ci ratio: 1.684847e-02	ci left: 8.368400e-01	ci right 8.511590e-01	k: 8441	n:10000
MYH15   10000 perm   2 sec   (5527 perm/sec)   p_kst 8.441000e-01   p_cons 4.830000e-01   p_joint 8.165000e-01

Outputting figure to mutsig2_images.part000000000110/MYH15.2_6009_10000_0.8441_0.483_0.8165.png
                gene_name: MYH15
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 62 percent done.
MYH6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.415757e-01	ci left: 6.613851e-02	ci right 7.631298e-02	k: 711	n:10000
Cons ci ratio: 9.611774e-02	ci left: 1.357035e-01	ci right 1.495054e-01	k: 1425	n:10000
KS ci ratio: 6.090642e-02	ci left: 2.838926e-01	ci right 3.018282e-01	k: 2928	n:10000
MYH6   10000 perm   2 sec   (5551 perm/sec)   p_kst 2.928000e-01   p_cons 1.425000e-01   p_joint 7.110000e-02

Joint ci ratio: 6.578898e-02	ci left: 1.457679e-01	ci right 1.557339e-01	k: 3014	n:20000
Cons ci ratio: 6.270728e-02	ci left: 1.583001e-01	ci right 1.685980e-01	k: 3268	n:20000
KS ci ratio: 4.350300e-02	ci left: 2.824257e-01	ci right 2.950357e-01	k: 5774	n:20000
MYH6   20000 perm   4 sec   (4962 perm/sec)   p_kst 2.887000e-01   p_cons 1.634000e-01   p_joint 1.507000e-01

Outputting figure to mutsig2_images.part000000000110/MYH6.2_5968_20000_0.2887_0.1634_0.1507.png
                gene_name: MYH6
               theta_stop: 0.066 
                    nperm: 20000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 69 percent done.
MYH7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.339492e-02	ci left: 5.696526e-01	ci right 5.891012e-01	k: 5794	n:10000
KS ci ratio: 1.158783e-02	ci left: 9.142005e-01	ci right 9.249535e-01	k: 9197	n:10000
MYH7   10000 perm   2 sec   (5786 perm/sec)   p_kst 9.197000e-01   p_cons 5.794000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000110/MYH7.2_5960_10000_0.9197_0.5794_1.png
                gene_name: MYH7
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
MYH7B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.580662e-02	ci left: 2.532041e-01	ci right 2.705349e-01	k: 2618	n:10000
Cons ci ratio: 3.465118e-02	ci left: 5.515074e-01	ci right 5.710568e-01	k: 5613	n:10000
KS ci ratio: 1.434278e-01	ci left: 6.449503e-02	ci right 7.455749e-02	k: 694	n:10000
MYH7B   10000 perm   2 sec   (5525 perm/sec)   p_kst 6.940000e-02   p_cons 5.613000e-01   p_joint 2.618000e-01

Joint ci ratio: 5.373702e-02	ci left: 2.044716e-01	ci right 2.158128e-01	k: 4202	n:20000
Cons ci ratio: 2.513414e-02	ci left: 5.418218e-01	ci right 5.556640e-01	k: 10975	n:20000
KS ci ratio: 1.004153e-01	ci left: 6.723404e-02	ci right 7.439135e-02	k: 1415	n:20000
MYH7B   20000 perm   4 sec   (5018 perm/sec)   p_kst 7.075000e-02   p_cons 5.487500e-01   p_joint 2.101000e-01

Joint ci ratio: 5.422957e-02	ci left: 1.442959e-01	ci right 1.523723e-01	k: 4449	n:30000
Cons ci ratio: 2.061856e-02	ci left: 5.407789e-01	ci right 5.520788e-01	k: 16393	n:30000
KS ci ratio: 8.180295e-02	ci left: 6.818418e-02	ci right 7.403254e-02	k: 2132	n:30000
MYH7B   30000 perm   6 sec   (4817 perm/sec)   p_kst 7.106667e-02   p_cons 5.464333e-01   p_joint 1.483000e-01

Outputting figure to mutsig2_images.part000000000110/MYH7B.2_6124_30000_0.071067_0.54643_0.1483.png
                gene_name: MYH7B
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.074 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 85 percent done.
MYL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.301551e-01	ci left: 1.160595e-02	ci right 1.628351e-02	k: 138	n:10000
Cons ci ratio: 3.338123e-02	ci left: 5.698531e-01	ci right 5.893005e-01	k: 5796	n:10000
KS ci ratio: 3.787022e-01	ci left: 8.595766e-03	ci right 1.269681e-02	k: 105	n:10000
MYL6   10000 perm   1 sec   (8208 perm/sec)   p_kst 1.050000e-02   p_cons 5.796000e-01   p_joint 1.380000e-02

Joint ci ratio: 1.499261e-01	ci left: 3.056735e-02	ci right 3.556960e-02	k: 660	n:20000
Cons ci ratio: 2.348219e-02	ci left: 5.752781e-01	ci right 5.889980e-01	k: 11643	n:20000
KS ci ratio: 2.640385e-01	ci left: 9.460703e-03	ci right 1.238410e-02	k: 217	n:20000
MYL6   20000 perm   3 sec   (7243 perm/sec)   p_kst 1.085000e-02   p_cons 5.821500e-01   p_joint 3.300000e-02

Joint ci ratio: 1.301125e-01	ci left: 2.745293e-02	ci right 3.130560e-02	k: 880	n:30000
Cons ci ratio: 1.919650e-02	ci left: 5.759602e-01	ci right 5.871573e-01	k: 17447	n:30000
KS ci ratio: 2.189992e-01	ci left: 9.409021e-03	ci right 1.175388e-02	k: 316	n:30000
MYL6   30000 perm   4 sec   (6841 perm/sec)   p_kst 1.053333e-02   p_cons 5.815667e-01   p_joint 2.933333e-02

Joint ci ratio: 1.667645e-01	ci left: 1.248787e-02	ci right 1.478354e-02	k: 544	n:40000
Cons ci ratio: 1.647979e-02	ci left: 5.809792e-01	ci right 5.906583e-01	k: 23433	n:40000
KS ci ratio: 1.918899e-01	ci left: 9.333738e-03	ci right 1.133831e-02	k: 412	n:40000
MYL6   40000 perm   6 sec   (6566 perm/sec)   p_kst 1.030000e-02   p_cons 5.858250e-01   p_joint 1.360000e-02

Joint ci ratio: 9.784898e-02	ci left: 2.957621e-02	ci right 3.263855e-02	k: 1554	n:50000
Cons ci ratio: 1.468318e-02	ci left: 5.833703e-01	ci right 5.920195e-01	k: 29385	n:50000
KS ci ratio: 1.733795e-01	ci left: 9.242099e-03	ci right 1.101547e-02	k: 505	n:50000
MYL6   50000 perm   8 sec   (6346 perm/sec)   p_kst 1.010000e-02   p_cons 5.877000e-01   p_joint 3.108000e-02

Joint ci ratio: 8.979655e-02	ci left: 2.939932e-02	ci right 3.217964e-02	k: 1846	n:60000
Cons ci ratio: 1.339883e-02	ci left: 5.839324e-01	ci right 5.918258e-01	k: 35273	n:60000
KS ci ratio: 1.601763e-01	ci left: 9.091242e-03	ci right 1.069003e-02	k: 592	n:60000
MYL6   60000 perm   10 sec   (6152 perm/sec)   p_kst 9.866667e-03   p_cons 5.878833e-01   p_joint 3.076667e-02

Joint ci ratio: 8.950364e-02	ci left: 2.547638e-02	ci right 2.787736e-02	k: 1866	n:70000
Cons ci ratio: 1.241182e-02	ci left: 5.839569e-01	ci right 5.912644e-01	k: 41133	n:70000
KS ci ratio: 1.464702e-01	ci left: 9.386263e-03	ci right 1.088333e-02	k: 708	n:70000
MYL6   70000 perm   12 sec   (5991 perm/sec)   p_kst 1.011429e-02   p_cons 5.876143e-01   p_joint 2.665714e-02

Joint ci ratio: 8.160065e-02	ci left: 2.689221e-02	ci right 2.919218e-02	k: 2242	n:80000
Cons ci ratio: 1.164023e-02	ci left: 5.829405e-01	ci right 5.897783e-01	k: 46909	n:80000
KS ci ratio: 1.371204e-01	ci left: 9.418678e-03	ci right 1.081719e-02	k: 808	n:80000
MYL6   80000 perm   14 sec   (5868 perm/sec)   p_kst 1.010000e-02   p_cons 5.863625e-01   p_joint 2.802500e-02

Joint ci ratio: 7.719195e-02	ci left: 2.677924e-02	ci right 2.894023e-02	k: 2506	n:90000
Cons ci ratio: 1.098525e-02	ci left: 5.826626e-01	ci right 5.891097e-01	k: 52730	n:90000
KS ci ratio: 1.286463e-01	ci left: 9.553820e-03	ci right 1.087803e-02	k: 918	n:90000
MYL6   90000 perm   16 sec   (5743 perm/sec)   p_kst 1.020000e-02   p_cons 5.858889e-01   p_joint 2.784444e-02

Joint ci ratio: 7.245261e-02	ci left: 2.740861e-02	ci right 2.947886e-02	k: 2843	n:100000
Cons ci ratio: 1.041250e-02	ci left: 5.832501e-01	ci right 5.893649e-01	k: 58631	n:100000
KS ci ratio: 1.222936e-01	ci left: 9.547687e-03	ci right 1.080097e-02	k: 1016	n:100000
MYL6   100000 perm   18 sec   (5621 perm/sec)   p_kst 1.016000e-02   p_cons 5.863100e-01   p_joint 2.843000e-02

Joint ci ratio: 6.654444e-02	ci left: 2.956321e-02	ci right 3.160709e-02	k: 3363	n:110000
Cons ci ratio: 9.936704e-03	ci left: 5.829642e-01	ci right 5.887949e-01	k: 64447	n:110000
KS ci ratio: 1.160638e-01	ci left: 9.667591e-03	ci right 1.086753e-02	k: 1128	n:110000
MYL6   110000 perm   20 sec   (5507 perm/sec)   p_kst 1.025455e-02   p_cons 5.858818e-01   p_joint 3.057273e-02

Joint ci ratio: 6.379957e-02	ci left: 2.952606e-02	ci right 3.148005e-02	k: 3659	n:120000
Cons ci ratio: 9.509237e-03	ci left: 5.833154e-01	ci right 5.888971e-01	k: 70333	n:120000
KS ci ratio: 1.110606e-01	ci left: 9.704022e-03	ci right 1.085316e-02	k: 1232	n:120000
MYL6   120000 perm   22 sec   (5395 perm/sec)   p_kst 1.026667e-02   p_cons 5.861083e-01   p_joint 3.049167e-02

Joint ci ratio: 6.150497e-02	ci left: 2.936728e-02	ci right 3.123837e-02	k: 3938	n:130000
Cons ci ratio: 9.136923e-03	ci left: 5.833861e-01	ci right 5.887485e-01	k: 76189	n:130000
KS ci ratio: 1.070992e-01	ci left: 9.653414e-03	ci right 1.075321e-02	k: 1325	n:130000
MYL6   130000 perm   25 sec   (5304 perm/sec)   p_kst 1.019231e-02   p_cons 5.860692e-01   p_joint 3.029231e-02

Joint ci ratio: 5.922451e-02	ci left: 2.944348e-02	ci right 3.124747e-02	k: 4247	n:140000
Cons ci ratio: 8.818401e-03	ci left: 5.827211e-01	ci right 5.878896e-01	k: 81943	n:140000
KS ci ratio: 1.027320e-01	ci left: 9.763791e-03	ci right 1.082807e-02	k: 1440	n:140000
MYL6   140000 perm   27 sec   (5213 perm/sec)   p_kst 1.028571e-02   p_cons 5.853071e-01   p_joint 3.033571e-02

Joint ci ratio: 5.729054e-02	ci left: 2.939886e-02	ci right 3.113936e-02	k: 4539	n:150000
Cons ci ratio: 8.522908e-03	ci left: 5.826083e-01	ci right 5.876017e-01	k: 87766	n:150000
KS ci ratio: 9.970402e-02	ci left: 9.691166e-03	ci right 1.071457e-02	k: 1529	n:150000
MYL6   150000 perm   29 sec   (5116 perm/sec)   p_kst 1.019333e-02   p_cons 5.851067e-01   p_joint 3.026000e-02

Outputting figure to mutsig2_images.part000000000110/MYL6.2_513_150000_0.010193_0.58511_0.03026.png
                gene_name: MYL6
               theta_stop: 0.100 
                    nperm: 150000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0097 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.031 

Current progress: 92 percent done.
MYLIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.981334e-03	ci left: 9.457535e-01	ci right 9.543819e-01	k: 9502	n:10000
KS ci ratio: 1.479875e-02	ci left: 8.686652e-01	ci right 8.817153e-01	k: 8753	n:10000
MYLIP   10000 perm   1 sec   (7368 perm/sec)   p_kst 8.753000e-01   p_cons 9.502000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000110/MYLIP.2_1366_10000_0.8753_0.9502_1.png
                gene_name: MYLIP
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000110
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 110 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1707>
Subject: Job 9877603: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1707>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000111> was used as the working directory.
Started at Fri Oct  5 22:47:39 2012
Results reported at Fri Oct  5 22:49:20 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000111.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000111.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 111  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000111.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    105.64 sec.
    Max Memory :      1936 MB
    Max Swap   :      4740 MB

    Max Processes  :         7
    Max Threads    :        55

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
111
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 111
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 111: processing genes 9975 - 10064
Calculating significance of each gene.
Using projection method.
9975	MYO10	1
9976	MYO15A	7.088905e-01
9977	MYO16	1
9978	MYO18A	1
9979	MYO18B	1.523324e-01
9980	MYO19	1
9981	MYO1A	1
9982	MYO1B	1
9983	MYO1C	1
9984	MYO1D	1
9985	MYO1E	3.241109e-01
9986	MYO1F	2.731989e-01
9987	MYO1G	1
9988	MYO1H	2.050122e-01
9989	MYO3A	1
9990	MYO3B	1
9991	MYO5A	1
9992	MYO5B	1
9993	MYO5C	4.698832e-01
9994	MYO6	1.455960e-01
9995	MYO7A	1
9996	MYO7B	1
9997	MYO9A	5.018209e-01
9998	MYO9B	1
9999	MYOC	1.724583e-01
10000/18134 In gene MYOCD the following bins exceed PROBCAP:
    PRAD-EJ-5505	categ 6	N = 2881    n = 1	mu =   1.33e-07
10000	MYOCD	6.236648e-02
10001	MYOD1	1
10002	MYOF	1
10003	MYOG	1
10004	MYOM1	1
10005	MYOM2	1
10006	MYOM3	1
10007	MYOT	1
10008	MYOZ1	1
10009	MYOZ2	1
10010	MYOZ3	1
10011	MYPN	1
10012	MYPOP	1
10013	MYRIP	1
10014	MYSM1	1
10015	MYST1	1
10016	MYST2	1
10017	MYST3	4.831513e-01
10018	MYST4	1
10019	MYT1	1
10020	MYT1L	2.617305e-01
10021	MZF1	1
10022	N4BP1	1
10023	N4BP2	1
10024	N4BP2L1	1
10025	N4BP2L2	1
10026	N4BP3	1
10027	N6AMT1	1
10028	N6AMT2	1
10029	NAA10	1
10030	NAA11	1
10031	NAA15	1
10032	NAA16	1
10033	NAA20	5.945986e-02
10034	NAA25	1
10035	NAA30	1
10036	NAA35	1
10037	NAA38	1
10038	NAA40	1
10039	NAA50	1
10040	NAAA	1.303367e-01
10041	NAALAD2	1
10042	NAALADL1	1
10043	NAALADL2	1
10044	NAB1	1
10045	NAB2	1
10046	NACA	1
10047	NACA2	1
10048	NACC1	1
10049	NACC2	1
10050	NADK	1
10051	NADSYN1	1
10052	NAE1	1
10053	NAF1	1
10054	NAGA	1
10055	NAGK	1
10056	NAGLU	1
10057	NAGPA	1
10058	NAGS	1
10059	NAIF1	1
10060	NALCN	4.441461e-01
10061	NAMPT	1
10062	NANOG	1
10063	NANOS2	1
10064	NANOS3	1
Done

Running MutSig 2:
Scatter job 111: processing genes 9975 - 10064
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MYO18B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.215838e-02	ci left: 9.065853e-01	ci right 9.177733e-01	k: 9123	n:10000
KS ci ratio: 3.950098e-02	ci left: 4.862528e-01	ci right 5.059495e-01	k: 4961	n:10000
MYO18B   10000 perm   2 sec   (4181 perm/sec)   p_kst 4.961000e-01   p_cons 9.123000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/MYO18B.2_7872_10000_0.4961_0.9123_1.png
                gene_name: MYO18B
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000111
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 111 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1705>
Subject: Job 9877610: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1705>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000112> was used as the working directory.
Started at Fri Oct  5 22:48:00 2012
Results reported at Sat Oct  6 00:03:36 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000112.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000112.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 112  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000112.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   4576.99 sec.
    Max Memory :      2370 MB
    Max Swap   :      4739 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
112
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 112
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 112: processing genes 10065 - 10155
Calculating significance of each gene.
Using projection method.
10065	NANP	1
10066	NANS	1
10067	NAP1L1	7.404988e-02
10068	NAP1L2	1
10069	NAP1L3	1
10070	NAP1L4	1
10071	NAP1L5	1.589885e-02
10072	NAPA	1
10073	NAPB	1
10074	NAPEPLD	1
10075	NAPG	1
10076	NAPRT1	1
10077	NAPSA	1
10078	NARF	1
10079	NARFL	1
10080	NARG2	1
10081	NARS	1
10082	NARS2	3.554498e-02
10083	NASP	1.616327e-02
10084	NAT1	1
10085	NAT10	1
10086	NAT15	1
10087	NAT2	1
10088	NAT6	1
10089	NAT8	1
10090	NAT8B	1
10091	NAT8L	1
10092	NAT9	1
10093	NAV1	1
10094	NAV2	3.065929e-02
10095	NAV3	1
10096	NBAS	1
10097	NBEA	1
10098	NBEAL1	1.461446e-01
10099	NBEAL2	1
10100	NBL1	1
10101	NBN	2.093459e-01
10102	NBPF1	1.245506e-03
10103	NBPF10	1
10104	NBPF14	1
10105	NBPF15	1
10106	NBPF16	1
10107	NBPF3	1.333077e-03
10108	NBPF7	1
10109	NBPF9	2.116957e-01
10110	NBR1	1
10111	NCALD	1
10112	NCAM1	1.435713e-01
10113	NCAM2	1.280096e-02
10114	NCAN	3.049328e-01
10115	NCAPD2	1
10116	NCAPD3	1
10117	NCAPG	1
10118	NCAPG2	2.535814e-01
10119	NCAPH	1
10120	NCAPH2	1
10121	NCBP1	1
10122	NCBP2	1
10123	NCCRP1	1
10124	NCDN	1
10125	NCEH1	1
10126	NCF1	1
10127	NCF2	1
10128	NCF4	1
10129	NCK1	1
10130	NCK2	1
10131	NCKAP1	1
10132	NCKAP1L	7.240567e-02
10133	NCKAP5	1.056209e-01
10134	NCKAP5L	2.103461e-01
10135	NCKIPSD	1
10136	NCL	1
10137	NCLN	1
10138	NCOA1	1
10139	NCOA2	1
10140	NCOA3	1
10141	NCOA4	4.361120e-03
10142	NCOA5	1
10143	NCOA6	1
10144	NCOA7	1
10145	NCOR1	4.826462e-01
10146	NCOR2	1
10147	NCR1	1
10148	NCR2	1
10149	NCR3	1
10150	NCS1	1
10151	NCSTN	1
10152	NDC80	1.102540e-01
10153	NDE1	1
10154	NDEL1	1
10155	NDFIP1	1
Done

Running MutSig 2:
Scatter job 112: processing genes 10065 - 10155
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
NAV2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.511547e-02	ci left: 8.638635e-01	ci right 8.771198e-01	k: 8706	n:10000
KS ci ratio: 1.920806e-02	ci left: 7.985170e-01	ci right 8.141041e-01	k: 8064	n:10000
NAV2   10000 perm   3 sec   (3669 perm/sec)   p_kst 8.064000e-01   p_cons 8.706000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000112/NAV2.3_7560_10000_0.8064_0.8706_1.png
                gene_name: NAV2
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 12 percent done.
NBPF1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.378673e-02	ci left: 3.374673e-01	ci right 3.562220e-01	k: 3468	n:10000
Cons ci ratio: 4.893321e-02	ci left: 3.812197e-01	ci right 4.004439e-01	k: 3908	n:10000
KS ci ratio: 2.552671e-02	ci left: 6.931293e-01	ci right 7.111528e-01	k: 7022	n:10000
NBPF1   10000 perm   2 sec   (4983 perm/sec)   p_kst 7.022000e-01   p_cons 3.908000e-01   p_joint 3.468000e-01

Outputting figure to mutsig2_images.part000000000112/NBPF1.2_3517_10000_0.7022_0.3908_0.3468.png
                gene_name: NBPF1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 25 percent done.
NBPF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.716947e-02	ci left: 5.166574e-01	ci right 5.363271e-01	k: 5265	n:10000
Cons ci ratio: 8.072269e-03	ci left: 9.553457e-01	ci right 9.631839e-01	k: 9594	n:10000
KS ci ratio: 5.406084e-02	ci left: 3.351826e-01	ci right 3.539081e-01	k: 3445	n:10000
NBPF3   10000 perm   2 sec   (5478 perm/sec)   p_kst 3.445000e-01   p_cons 9.594000e-01   p_joint 5.265000e-01

Outputting figure to mutsig2_images.part000000000112/NBPF3.3_1958_10000_0.3445_0.9594_0.5265.png
                gene_name: NBPF3
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 38 percent done.
NASP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.861344e-01	ci left: 8.233934e-03	ci right 1.225906e-02	k: 101	n:10000
Cons ci ratio: 1.135109e-02	ci left: 9.172915e-01	ci right 9.278607e-01	k: 9227	n:10000
KS ci ratio: 1.599773e+00	ci left: 1.623679e-04	ci right 1.166444e-03	k: 5	n:10000
NASP   10000 perm   2 sec   (5530 perm/sec)   p_kst 5.000000e-04   p_cons 9.227000e-01   p_joint 1.010000e-02

Joint ci ratio: 3.693575e-01	ci left: 4.567803e-03	ci right 6.679840e-03	k: 111	n:20000
Cons ci ratio: 8.052736e-03	ci left: 9.184011e-01	ci right 9.258757e-01	k: 18444	n:20000
KS ci ratio: 1.481324e+00	ci left: 1.101024e-04	ci right 6.528585e-04	k: 6	n:20000
NASP   20000 perm   4 sec   (4853 perm/sec)   p_kst 3.000000e-04   p_cons 9.222000e-01   p_joint 5.550000e-03

Joint ci ratio: 4.614141e-01	ci left: 1.848835e-03	ci right 2.984304e-03	k: 71	n:30000
Cons ci ratio: 6.630872e-03	ci left: 9.178561e-01	ci right 9.239954e-01	k: 27629	n:30000
KS ci ratio: 1.385721e+00	ci left: 9.381708e-05	ci right 4.806964e-04	k: 7	n:30000
NASP   30000 perm   6 sec   (4687 perm/sec)   p_kst 2.333333e-04   p_cons 9.209667e-01   p_joint 2.366667e-03

Joint ci ratio: 4.174083e-01	ci left: 1.742441e-03	ci right 2.682173e-03	k: 87	n:40000
Cons ci ratio: 6.284117e-03	ci left: 9.039090e-01	ci right 9.096318e-01	k: 36272	n:40000
KS ci ratio: 1.131423e+00	ci left: 1.372867e-04	ci right 4.919976e-04	k: 11	n:40000
NASP   40000 perm   9 sec   (4603 perm/sec)   p_kst 2.750000e-04   p_cons 9.068000e-01   p_joint 2.175000e-03

Joint ci ratio: 4.128281e-01	ci left: 1.429723e-03	ci right 2.189994e-03	k: 89	n:50000
Cons ci ratio: 5.650463e-03	ci left: 9.033072e-01	ci right 9.084455e-01	k: 45295	n:50000
KS ci ratio: 1.011978e+00	ci left: 1.530868e-04	ci right 4.697478e-04	k: 14	n:50000
NASP   50000 perm   11 sec   (4496 perm/sec)   p_kst 2.800000e-04   p_cons 9.059000e-01   p_joint 1.780000e-03

Joint ci ratio: 8.763852e-01	ci left: 1.906644e-04	ci right 4.944703e-04	k: 19	n:60000
Cons ci ratio: 4.699661e-03	ci left: 9.184248e-01	ci right 9.227677e-01	k: 55237	n:60000
KS ci ratio: 8.763852e-01	ci left: 1.906644e-04	ci right 4.944703e-04	k: 19	n:60000
NASP   60000 perm   14 sec   (4387 perm/sec)   p_kst 3.166667e-04   p_cons 9.206167e-01   p_joint 3.166667e-04

Joint ci ratio: 8.000238e-01	ci left: 2.082971e-04	ci right 4.929779e-04	k: 23	n:70000
Cons ci ratio: 4.367628e-03	ci left: 9.180235e-01	ci right 9.220559e-01	k: 64404	n:70000
KS ci ratio: 8.000238e-01	ci left: 2.082971e-04	ci right 4.929779e-04	k: 23	n:70000
NASP   70000 perm   16 sec   (4306 perm/sec)   p_kst 3.285714e-04   p_cons 9.200571e-01   p_joint 3.285714e-04

Joint ci ratio: 7.686455e-01	ci left: 2.022434e-04	ci right 4.612773e-04	k: 25	n:80000
Cons ci ratio: 4.102693e-03	ci left: 9.175300e-01	ci right 9.213145e-01	k: 73555	n:80000
KS ci ratio: 7.686455e-01	ci left: 2.022434e-04	ci right 4.612773e-04	k: 25	n:80000
NASP   80000 perm   19 sec   (4220 perm/sec)   p_kst 3.125000e-04   p_cons 9.194375e-01   p_joint 3.125000e-04

Joint ci ratio: 6.928376e-01	ci left: 2.340449e-04	ci right 4.888761e-04	k: 31	n:90000
Cons ci ratio: 4.240513e-03	ci left: 9.027855e-01	ci right 9.066329e-01	k: 81425	n:90000
KS ci ratio: 6.928376e-01	ci left: 2.340449e-04	ci right 4.888761e-04	k: 31	n:90000
NASP   90000 perm   22 sec   (4148 perm/sec)   p_kst 3.444444e-04   p_cons 9.047222e-01   p_joint 3.444444e-04

Joint ci ratio: 6.357840e-01	ci left: 2.605271e-04	ci right 5.099606e-04	k: 37	n:100000
Cons ci ratio: 4.021541e-03	ci left: 9.029440e-01	ci right 9.065925e-01	k: 90478	n:100000
KS ci ratio: 6.357840e-01	ci left: 2.605271e-04	ci right 5.099606e-04	k: 37	n:100000
NASP   100000 perm   25 sec   (4080 perm/sec)   p_kst 3.700000e-04   p_cons 9.047800e-01   p_joint 3.700000e-04

Joint ci ratio: 5.908413e-01	ci left: 2.829168e-04	ci right 5.265163e-04	k: 43	n:110000
Cons ci ratio: 3.838382e-03	ci left: 9.028488e-01	ci right 9.063299e-01	k: 99506	n:110000
KS ci ratio: 5.908413e-01	ci left: 2.829168e-04	ci right 5.265163e-04	k: 43	n:110000
NASP   110000 perm   27 sec   (4014 perm/sec)   p_kst 3.909091e-04   p_cons 9.046000e-01   p_joint 3.909091e-04

Joint ci ratio: 6.197005e-01	ci left: 2.311167e-04	ci right 4.442592e-04	k: 39	n:120000
Cons ci ratio: 3.680991e-03	ci left: 9.026384e-01	ci right 9.059754e-01	k: 108518	n:120000
KS ci ratio: 5.656877e-01	ci left: 2.877957e-04	ci right 5.208000e-04	k: 47	n:120000
NASP   120000 perm   30 sec   (3944 perm/sec)   p_kst 3.916667e-04   p_cons 9.043167e-01   p_joint 3.250000e-04

Joint ci ratio: 5.716852e-01	ci left: 2.590711e-04	ci right 4.719533e-04	k: 46	n:130000
Cons ci ratio: 3.541629e-03	ci left: 9.024555e-01	ci right 9.056649e-01	k: 117529	n:130000
KS ci ratio: 5.237172e-01	ci left: 3.187348e-04	ci right 5.506576e-04	k: 55	n:130000
NASP   130000 perm   34 sec   (3872 perm/sec)   p_kst 4.230769e-04   p_cons 9.040692e-01   p_joint 3.538462e-04

Joint ci ratio: 5.657042e-01	ci left: 2.466803e-04	ci right 4.464041e-04	k: 47	n:140000
Cons ci ratio: 3.407126e-03	ci left: 9.028046e-01	ci right 9.058929e-01	k: 126610	n:140000
KS ci ratio: 5.102312e-01	ci left: 3.145991e-04	ci right 5.355279e-04	k: 58	n:140000
NASP   140000 perm   37 sec   (3799 perm/sec)   p_kst 4.142857e-04   p_cons 9.043571e-01   p_joint 3.357143e-04

Joint ci ratio: 5.333466e-01	ci left: 2.646818e-04	ci right 4.621435e-04	k: 53	n:150000
Cons ci ratio: 3.290649e-03	ci left: 9.029075e-01	ci right 9.058902e-01	k: 135661	n:150000
KS ci ratio: 4.861092e-01	ci left: 3.286003e-04	ci right 5.448116e-04	k: 64	n:150000
NASP   150000 perm   40 sec   (3732 perm/sec)   p_kst 4.266667e-04   p_cons 9.044067e-01   p_joint 3.533333e-04

Joint ci ratio: 5.383625e-01	ci left: 2.427348e-04	ci right 4.261727e-04	k: 52	n:160000
Cons ci ratio: 3.184779e-03	ci left: 9.030306e-01	ci right 9.059173e-01	k: 144717	n:160000
KS ci ratio: 4.718093e-01	ci left: 3.300438e-04	ci right 5.387581e-04	k: 68	n:160000
NASP   160000 perm   44 sec   (3674 perm/sec)   p_kst 4.250000e-04   p_cons 9.044813e-01   p_joint 3.250000e-04

Joint ci ratio: 5.237442e-01	ci left: 2.437356e-04	ci right 4.210975e-04	k: 55	n:170000
Cons ci ratio: 3.085246e-03	ci left: 9.033240e-01	ci right 9.061210e-01	k: 153804	n:170000
KS ci ratio: 4.587014e-01	ci left: 3.314000e-04	ci right 5.333359e-04	k: 72	n:170000
NASP   170000 perm   47 sec   (3609 perm/sec)   p_kst 4.235294e-04   p_cons 9.047294e-01   p_joint 3.235294e-04

Joint ci ratio: 4.977534e-01	ci left: 2.592328e-04	ci right 4.352960e-04	k: 61	n:180000
Cons ci ratio: 2.999119e-03	ci left: 9.033175e-01	ci right 9.060362e-01	k: 162843	n:180000
KS ci ratio: 4.327918e-01	ci left: 3.573805e-04	ci right 5.592783e-04	k: 81	n:180000
NASP   180000 perm   51 sec   (3559 perm/sec)   p_kst 4.500000e-04   p_cons 9.046833e-01   p_joint 3.388889e-04

Joint ci ratio: 4.651303e-01	ci left: 2.872132e-04	ci right 4.654552e-04	k: 70	n:190000
Cons ci ratio: 2.918487e-03	ci left: 9.033921e-01	ci right 9.060377e-01	k: 171897	n:190000
KS ci ratio: 4.154207e-01	ci left: 3.714822e-04	ci right 5.705928e-04	k: 88	n:190000
NASP   190000 perm   54 sec   (3501 perm/sec)   p_kst 4.631579e-04   p_cons 9.047211e-01   p_joint 3.684211e-04

Joint ci ratio: 4.525566e-01	ci left: 2.905404e-04	ci right 4.644792e-04	k: 74	n:200000
Cons ci ratio: 2.844521e-03	ci left: 9.034299e-01	ci right 9.060083e-01	k: 180945	n:200000
KS ci ratio: 4.020870e-01	ci left: 3.798240e-04	ci right 5.751307e-04	k: 94	n:200000
NASP   200000 perm   58 sec   (3444 perm/sec)   p_kst 4.700000e-04   p_cons 9.047250e-01   p_joint 3.700000e-04

Joint ci ratio: 4.437691e-01	ci left: 2.893781e-04	ci right 4.582494e-04	k: 77	n:210000
Cons ci ratio: 2.541250e-03	ci left: 9.177291e-01	ci right 9.200689e-01	k: 192970	n:210000
KS ci ratio: 3.919057e-01	ci left: 3.831699e-04	ci right 5.739179e-04	k: 99	n:210000
NASP   210000 perm   62 sec   (3399 perm/sec)   p_kst 4.714286e-04   p_cons 9.189048e-01   p_joint 3.666667e-04

Joint ci ratio: 4.354744e-01	ci left: 2.883512e-04	ci right 4.525568e-04	k: 80	n:220000
Cons ci ratio: 2.482218e-03	ci left: 9.177926e-01	ci right 9.200781e-01	k: 202167	n:220000
KS ci ratio: 3.824607e-01	ci left: 3.862683e-04	ci right 5.727596e-04	k: 104	n:220000
NASP   220000 perm   66 sec   (3347 perm/sec)   p_kst 4.727273e-04   p_cons 9.189409e-01   p_joint 3.636364e-04

Joint ci ratio: 4.226245e-01	ci left: 2.952059e-04	ci right 4.569531e-04	k: 85	n:230000
Cons ci ratio: 2.427826e-03	ci left: 9.178075e-01	ci right 9.200428e-01	k: 211354	n:230000
KS ci ratio: 3.736671e-01	ci left: 3.891476e-04	ci right 5.716522e-04	k: 109	n:230000
NASP   230000 perm   70 sec   (3298 perm/sec)   p_kst 4.739130e-04   p_cons 9.189304e-01   p_joint 3.695652e-04

Joint ci ratio: 4.108489e-01	ci left: 3.015547e-04	ci right 4.609189e-04	k: 90	n:240000
Cons ci ratio: 2.596799e-03	ci left: 9.035350e-01	ci right 9.058885e-01	k: 217132	n:240000
KS ci ratio: 3.654535e-01	ci left: 3.918319e-04	ci right 5.705928e-04	k: 114	n:240000
NASP   240000 perm   74 sec   (3253 perm/sec)   p_kst 4.750000e-04   p_cons 9.047167e-01   p_joint 3.750000e-04

Joint ci ratio: 4.064086e-01	ci left: 2.966699e-04	ci right 4.513005e-04	k: 92	n:250000
Cons ci ratio: 2.542748e-03	ci left: 9.036670e-01	ci right 9.059716e-01	k: 226206	n:250000
KS ci ratio: 3.623186e-01	ci left: 3.834269e-04	ci right 5.564981e-04	k: 116	n:250000
NASP   250000 perm   78 sec   (3204 perm/sec)   p_kst 4.640000e-04   p_cons 9.048240e-01   p_joint 3.680000e-04

Joint ci ratio: 4.021093e-01	ci left: 2.921695e-04	ci right 4.424136e-04	k: 94	n:260000
Cons ci ratio: 2.490151e-03	ci left: 9.039129e-01	ci right 9.061704e-01	k: 235312	n:260000
KS ci ratio: 3.592629e-01	ci left: 3.756744e-04	ci right 5.434815e-04	k: 118	n:260000
NASP   260000 perm   82 sec   (3157 perm/sec)   p_kst 4.538462e-04   p_cons 9.050462e-01   p_joint 3.615385e-04

Joint ci ratio: 3.939019e-01	ci left: 2.946804e-04	ci right 4.423180e-04	k: 98	n:270000
Cons ci ratio: 2.442730e-03	ci left: 9.039958e-01	ci right 9.062103e-01	k: 244379	n:270000
KS ci ratio: 3.533733e-01	ci left: 3.752493e-04	ci right 5.394881e-04	k: 122	n:270000
NASP   270000 perm   87 sec   (3118 perm/sec)   p_kst 4.518519e-04   p_cons 9.051074e-01   p_joint 3.629630e-04

Joint ci ratio: 3.491421e-01	ci left: 3.716165e-04	ci right 5.318768e-04	k: 125	n:280000
Cons ci ratio: 2.400212e-03	ci left: 9.039080e-01	ci right 9.060837e-01	k: 253400	n:280000
KS ci ratio: 3.491421e-01	ci left: 3.716165e-04	ci right 5.318768e-04	k: 125	n:280000
NASP   280000 perm   91 sec   (3079 perm/sec)   p_kst 4.464286e-04   p_cons 9.050000e-01   p_joint 4.464286e-04

Joint ci ratio: 3.411140e-01	ci left: 3.776989e-04	ci right 5.360118e-04	k: 131	n:290000
Cons ci ratio: 2.359789e-03	ci left: 9.038300e-01	ci right 9.059688e-01	k: 262422	n:290000
KS ci ratio: 3.411140e-01	ci left: 3.776989e-04	ci right 5.360118e-04	k: 131	n:290000
NASP   290000 perm   95 sec   (3037 perm/sec)   p_kst 4.517241e-04   p_cons 9.049034e-01   p_joint 4.517241e-04

Joint ci ratio: 3.360605e-01	ci left: 3.773088e-04	ci right 5.326075e-04	k: 135	n:300000
Cons ci ratio: 2.321294e-03	ci left: 9.037609e-01	ci right 9.058646e-01	k: 271445	n:300000
KS ci ratio: 3.360605e-01	ci left: 3.773088e-04	ci right 5.326075e-04	k: 135	n:300000
NASP   300000 perm   100 sec   (2998 perm/sec)   p_kst 4.500000e-04   p_cons 9.048167e-01   p_joint 4.500000e-04

Joint ci ratio: 3.288832e-01	ci left: 3.828772e-04	ci right 5.363908e-04	k: 141	n:310000
Cons ci ratio: 2.284494e-03	ci left: 9.037063e-01	ci right 9.057764e-01	k: 280471	n:310000
KS ci ratio: 3.288832e-01	ci left: 3.828772e-04	ci right 5.363908e-04	k: 141	n:310000
NASP   310000 perm   105 sec   (2959 perm/sec)   p_kst 4.548387e-04   p_cons 9.047452e-01   p_joint 4.548387e-04

Joint ci ratio: 3.265926e-01	ci left: 3.766479e-04	ci right 5.263914e-04	k: 143	n:320000
Cons ci ratio: 2.245964e-03	ci left: 9.039192e-01	ci right 9.059547e-01	k: 289581	n:320000
KS ci ratio: 3.265926e-01	ci left: 3.766479e-04	ci right 5.263914e-04	k: 143	n:320000
NASP   320000 perm   109 sec   (2924 perm/sec)   p_kst 4.468750e-04   p_cons 9.049406e-01   p_joint 4.468750e-04

Joint ci ratio: 3.189316e-01	ci left: 3.847285e-04	ci right 5.333643e-04	k: 150	n:330000
Cons ci ratio: 2.212311e-03	ci left: 9.038849e-01	ci right 9.058898e-01	k: 298614	n:330000
KS ci ratio: 3.189316e-01	ci left: 3.847285e-04	ci right 5.333643e-04	k: 150	n:330000
NASP   330000 perm   115 sec   (2875 perm/sec)   p_kst 4.545455e-04   p_cons 9.048909e-01   p_joint 4.545455e-04

Joint ci ratio: 3.158106e-01	ci left: 3.815336e-04	ci right 5.272014e-04	k: 153	n:340000
Cons ci ratio: 2.177742e-03	ci left: 9.040420e-01	ci right 9.060158e-01	k: 307711	n:340000
KS ci ratio: 3.158106e-01	ci left: 3.815336e-04	ci right 5.272014e-04	k: 153	n:340000
NASP   340000 perm   120 sec   (2839 perm/sec)   p_kst 4.500000e-04   p_cons 9.050324e-01   p_joint 4.500000e-04

Joint ci ratio: 3.147918e-01	ci left: 3.732635e-04	ci right 5.152214e-04	k: 154	n:350000
Cons ci ratio: 2.146346e-03	ci left: 9.040611e-01	ci right 9.060065e-01	k: 316763	n:350000
KS ci ratio: 3.147918e-01	ci left: 3.732635e-04	ci right 5.152214e-04	k: 154	n:350000
NASP   350000 perm   125 sec   (2802 perm/sec)   p_kst 4.400000e-04   p_cons 9.050371e-01   p_joint 4.400000e-04

Joint ci ratio: 3.127814e-01	ci left: 3.680130e-04	ci right 5.069016e-04	k: 156	n:360000
Cons ci ratio: 2.115551e-03	ci left: 9.041380e-01	ci right 9.060555e-01	k: 325836	n:360000
KS ci ratio: 3.127814e-01	ci left: 3.680130e-04	ci right 5.069016e-04	k: 156	n:360000
NASP   360000 perm   130 sec   (2767 perm/sec)   p_kst 4.333333e-04   p_cons 9.051000e-01   p_joint 4.333333e-04

Joint ci ratio: 3.098358e-01	ci left: 3.655413e-04	ci right 5.019412e-04	k: 159	n:370000
Cons ci ratio: 2.085814e-03	ci left: 9.042299e-01	ci right 9.061205e-01	k: 334916	n:370000
KS ci ratio: 3.098358e-01	ci left: 3.655413e-04	ci right 5.019412e-04	k: 159	n:370000
NASP   370000 perm   135 sec   (2734 perm/sec)   p_kst 4.297297e-04   p_cons 9.051784e-01   p_joint 4.297297e-04

Joint ci ratio: 3.032716e-01	ci left: 3.729264e-04	ci right 5.085654e-04	k: 166	n:380000
Cons ci ratio: 2.057327e-03	ci left: 9.043144e-01	ci right 9.061794e-01	k: 343995	n:380000
KS ci ratio: 3.032716e-01	ci left: 3.729264e-04	ci right 5.085654e-04	k: 166	n:380000
NASP   380000 perm   141 sec   (2702 perm/sec)   p_kst 4.368421e-04   p_cons 9.052500e-01   p_joint 4.368421e-04

Joint ci ratio: 2.954141e-01	ci left: 3.847089e-04	ci right 5.203293e-04	k: 175	n:390000
Cons ci ratio: 2.031341e-03	ci left: 9.042789e-01	ci right 9.061202e-01	k: 353029	n:390000
KS ci ratio: 2.954141e-01	ci left: 3.847089e-04	ci right 5.203293e-04	k: 175	n:390000
NASP   390000 perm   146 sec   (2671 perm/sec)   p_kst 4.487179e-04   p_cons 9.052026e-01   p_joint 4.487179e-04

Joint ci ratio: 2.929286e-01	ci left: 3.820377e-04	ci right 5.153730e-04	k: 178	n:400000
Cons ci ratio: 2.005379e-03	ci left: 9.043257e-01	ci right 9.061435e-01	k: 362095	n:400000
KS ci ratio: 2.929286e-01	ci left: 3.820377e-04	ci right 5.153730e-04	k: 178	n:400000
NASP   400000 perm   152 sec   (2634 perm/sec)   p_kst 4.450000e-04   p_cons 9.052375e-01   p_joint 4.450000e-04

Joint ci ratio: 2.889210e-01	ci left: 3.840251e-04	ci right 5.158854e-04	k: 183	n:410000
Cons ci ratio: 1.979318e-03	ci left: 9.044634e-01	ci right 9.062577e-01	k: 371199	n:410000
KS ci ratio: 2.889210e-01	ci left: 3.840251e-04	ci right 5.158854e-04	k: 183	n:410000
NASP   410000 perm   157 sec   (2605 perm/sec)   p_kst 4.463415e-04   p_cons 9.053634e-01   p_joint 4.463415e-04

Joint ci ratio: 2.873644e-01	ci left: 3.792993e-04	ci right 5.087077e-04	k: 185	n:420000
Cons ci ratio: 1.954353e-03	ci left: 9.045850e-01	ci right 9.063570e-01	k: 380299	n:420000
KS ci ratio: 2.873644e-01	ci left: 3.792993e-04	ci right 5.087077e-04	k: 185	n:420000
NASP   420000 perm   163 sec   (2577 perm/sec)   p_kst 4.404762e-04   p_cons 9.054738e-01   p_joint 4.404762e-04

Joint ci ratio: 3.127926e-01	ci left: 3.081023e-04	ci right 4.243853e-04	k: 156	n:430000
Cons ci ratio: 1.932011e-03	ci left: 9.045494e-01	ci right 9.063010e-01	k: 389334	n:430000
KS ci ratio: 2.821041e-01	ci left: 3.855953e-04	ci right 5.143154e-04	k: 192	n:430000
NASP   430000 perm   168 sec   (2552 perm/sec)   p_kst 4.465116e-04   p_cons 9.054279e-01   p_joint 3.627907e-04

Joint ci ratio: 3.088824e-01	ci left: 3.094819e-04	ci right 4.245379e-04	k: 160	n:440000
Cons ci ratio: 1.909506e-03	ci left: 9.045976e-01	ci right 9.063288e-01	k: 398405	n:440000
KS ci ratio: 2.785193e-01	ci left: 3.873968e-04	ci right 5.147867e-04	k: 197	n:440000
NASP   440000 perm   174 sec   (2527 perm/sec)   p_kst 4.477273e-04   p_cons 9.054659e-01   p_joint 3.636364e-04

Joint ci ratio: 3.041945e-01	ci left: 3.128612e-04	ci right 4.270666e-04	k: 165	n:450000
Cons ci ratio: 1.888382e-03	ci left: 9.045881e-01	ci right 9.063001e-01	k: 407451	n:450000
KS ci ratio: 2.723959e-01	ci left: 3.974071e-04	ci right 5.247243e-04	k: 206	n:450000
NASP   450000 perm   180 sec   (2499 perm/sec)   p_kst 4.577778e-04   p_cons 9.054467e-01   p_joint 3.666667e-04

Joint ci ratio: 3.014827e-01	ci left: 3.120861e-04	ci right 4.247984e-04	k: 168	n:460000
Cons ci ratio: 1.868963e-03	ci left: 9.044851e-01	ci right 9.061793e-01	k: 416454	n:460000
KS ci ratio: 2.679031e-01	ci left: 4.029549e-04	ci right 5.295626e-04	k: 213	n:460000
NASP   460000 perm   186 sec   (2471 perm/sec)   p_kst 4.630435e-04   p_cons 9.053348e-01   p_joint 3.652174e-04

Joint ci ratio: 2.988422e-01	ci left: 3.113483e-04	ci right 4.226224e-04	k: 171	n:470000
Cons ci ratio: 1.849188e-03	ci left: 9.044743e-01	ci right 9.061505e-01	k: 425498	n:470000
KS ci ratio: 2.654340e-01	ci left: 4.023231e-04	ci right 5.273736e-04	k: 217	n:470000
NASP   470000 perm   192 sec   (2447 perm/sec)   p_kst 4.617021e-04   p_cons 9.053149e-01   p_joint 3.638298e-04

Joint ci ratio: 2.630321e-01	ci left: 4.017227e-04	ci right 5.252707e-04	k: 221	n:480000
Cons ci ratio: 1.830583e-03	ci left: 9.044117e-01	ci right 9.060709e-01	k: 434517	n:480000
KS ci ratio: 2.630321e-01	ci left: 4.017227e-04	ci right 5.252707e-04	k: 221	n:480000
NASP   480000 perm   198 sec   (2424 perm/sec)   p_kst 4.604167e-04   p_cons 9.052438e-01   p_joint 4.604167e-04

Joint ci ratio: 2.612731e-01	ci left: 3.992444e-04	ci right 5.210749e-04	k: 224	n:490000
Cons ci ratio: 1.811925e-03	ci left: 9.044091e-01	ci right 9.060514e-01	k: 443564	n:490000
KS ci ratio: 2.612731e-01	ci left: 3.992444e-04	ci right 5.210749e-04	k: 224	n:490000
NASP   490000 perm   204 sec   (2400 perm/sec)   p_kst 4.571429e-04   p_cons 9.052327e-01   p_joint 4.571429e-04

Joint ci ratio: 2.561982e-01	ci left: 4.080925e-04	ci right 5.298177e-04	k: 233	n:500000
Cons ci ratio: 1.793971e-03	ci left: 9.043927e-01	ci right 9.060186e-01	k: 452604	n:500000
KS ci ratio: 2.561982e-01	ci left: 4.080925e-04	ci right 5.298177e-04	k: 233	n:500000
NASP   500000 perm   210 sec   (2377 perm/sec)   p_kst 4.660000e-04   p_cons 9.052080e-01   p_joint 4.660000e-04

Joint ci ratio: 2.519271e-01	ci left: 4.147785e-04	ci right 5.361118e-04	k: 241	n:510000
Cons ci ratio: 1.776602e-03	ci left: 9.043711e-01	ci right 9.059812e-01	k: 461641	n:510000
KS ci ratio: 2.519271e-01	ci left: 4.147785e-04	ci right 5.361118e-04	k: 241	n:510000
NASP   510000 perm   217 sec   (2355 perm/sec)   p_kst 4.725490e-04   p_cons 9.051784e-01   p_joint 4.725490e-04

Joint ci ratio: 2.508932e-01	ci left: 4.104057e-04	ci right 5.298901e-04	k: 243	n:520000
Cons ci ratio: 1.759334e-03	ci left: 9.043890e-01	ci right 9.059834e-01	k: 470698	n:520000
KS ci ratio: 2.508932e-01	ci left: 4.104057e-04	ci right 5.298901e-04	k: 243	n:520000
NASP   520000 perm   223 sec   (2330 perm/sec)   p_kst 4.673077e-04   p_cons 9.051885e-01   p_joint 4.673077e-04

Joint ci ratio: 2.483613e-01	ci left: 4.115060e-04	ci right 5.299151e-04	k: 248	n:530000
Cons ci ratio: 1.742578e-03	ci left: 9.044044e-01	ci right 9.059836e-01	k: 479754	n:530000
KS ci ratio: 2.483613e-01	ci left: 4.115060e-04	ci right 5.299151e-04	k: 248	n:530000
NASP   530000 perm   229 sec   (2310 perm/sec)   p_kst 4.679245e-04   p_cons 9.051962e-01   p_joint 4.679245e-04

Joint ci ratio: 2.778300e-01	ci left: 3.173777e-04	ci right 4.214391e-04	k: 198	n:540000
Cons ci ratio: 1.725491e-03	ci left: 9.044992e-01	ci right 9.060631e-01	k: 488853	n:540000
KS ci ratio: 2.449417e-01	ci left: 4.160475e-04	ci right 5.338642e-04	k: 255	n:540000
NASP   540000 perm   236 sec   (2288 perm/sec)   p_kst 4.722222e-04   p_cons 9.052833e-01   p_joint 3.666667e-04

Joint ci ratio: 2.750790e-01	ci left: 3.183758e-04	ci right 4.215521e-04	k: 202	n:550000
Cons ci ratio: 1.709875e-03	ci left: 9.044921e-01	ci right 9.060418e-01	k: 497898	n:550000
KS ci ratio: 2.430504e-01	ci left: 4.153110e-04	ci right 5.318742e-04	k: 259	n:550000
NASP   550000 perm   243 sec   (2265 perm/sec)   p_kst 4.709091e-04   p_cons 9.052691e-01   p_joint 3.672727e-04

Joint ci ratio: 2.724082e-01	ci left: 3.193432e-04	ci right 4.216563e-04	k: 206	n:560000
Cons ci ratio: 1.695027e-03	ci left: 9.044495e-01	ci right 9.059856e-01	k: 506923	n:560000
KS ci ratio: 2.402933e-01	ci left: 4.179604e-04	ci right 5.337381e-04	k: 265	n:560000
NASP   560000 perm   250 sec   (2243 perm/sec)   p_kst 4.732143e-04   p_cons 9.052196e-01   p_joint 3.678571e-04

Joint ci ratio: 2.698137e-01	ci left: 3.202813e-04	ci right 4.217521e-04	k: 210	n:570000
Cons ci ratio: 1.680354e-03	ci left: 9.044295e-01	ci right 9.059523e-01	k: 515960	n:570000
KS ci ratio: 2.385069e-01	ci left: 4.172243e-04	ci right 5.318120e-04	k: 269	n:570000
NASP   570000 perm   256 sec   (2223 perm/sec)   p_kst 4.719298e-04   p_cons 9.051930e-01   p_joint 3.684211e-04

Joint ci ratio: 2.672920e-01	ci left: 3.211915e-04	ci right 4.218403e-04	k: 214	n:580000
Cons ci ratio: 1.666122e-03	ci left: 9.044034e-01	ci right 9.059132e-01	k: 524993	n:580000
KS ci ratio: 2.363286e-01	ci left: 4.181388e-04	ci right 5.317754e-04	k: 274	n:580000
NASP   580000 perm   263 sec   (2205 perm/sec)   p_kst 4.724138e-04   p_cons 9.051603e-01   p_joint 3.689655e-04

Joint ci ratio: 2.636381e-01	ci left: 3.252405e-04	ci right 4.255350e-04	k: 220	n:590000
Cons ci ratio: 1.651951e-03	ci left: 9.044089e-01	ci right 9.059058e-01	k: 534044	n:590000
KS ci ratio: 2.337917e-01	ci left: 4.206224e-04	ci right 5.335294e-04	k: 280	n:590000
NASP   590000 perm   270 sec   (2185 perm/sec)   p_kst 4.745763e-04   p_cons 9.051593e-01   p_joint 3.728814e-04

Joint ci ratio: 2.612841e-01	ci left: 3.260479e-04	ci right 4.255470e-04	k: 224	n:600000
Cons ci ratio: 1.638454e-03	ci left: 9.043807e-01	ci right 9.058654e-01	k: 543075	n:600000
KS ci ratio: 2.317390e-01	ci left: 4.214594e-04	ci right 5.334557e-04	k: 285	n:600000
NASP   600000 perm   277 sec   (2167 perm/sec)   p_kst 4.750000e-04   p_cons 9.051250e-01   p_joint 3.733333e-04

Joint ci ratio: 2.589921e-01	ci left: 3.268327e-04	ci right 4.255548e-04	k: 228	n:610000
Cons ci ratio: 1.625361e-03	ci left: 9.043453e-01	ci right 9.058180e-01	k: 552101	n:610000
KS ci ratio: 2.301354e-01	ci left: 4.207283e-04	ci right 5.316466e-04	k: 289	n:610000
NASP   610000 perm   284 sec   (2149 perm/sec)   p_kst 4.737705e-04   p_cons 9.050836e-01   p_joint 3.737705e-04

Joint ci ratio: 2.277908e-01	ci left: 4.230648e-04	ci right 5.333031e-04	k: 295	n:620000
Cons ci ratio: 1.611682e-03	ci left: 9.044066e-01	ci right 9.058670e-01	k: 561186	n:620000
KS ci ratio: 2.277908e-01	ci left: 4.230648e-04	ci right 5.333031e-04	k: 295	n:620000
NASP   620000 perm   291 sec   (2130 perm/sec)   p_kst 4.758065e-04   p_cons 9.051387e-01   p_joint 4.758065e-04

Joint ci ratio: 2.274077e-01	ci left: 4.178461e-04	ci right 5.265158e-04	k: 296	n:630000
Cons ci ratio: 1.599348e-03	ci left: 9.043577e-01	ci right 9.058068e-01	k: 570203	n:630000
KS ci ratio: 2.274077e-01	ci left: 4.178461e-04	ci right 5.265158e-04	k: 296	n:630000
NASP   630000 perm   298 sec   (2111 perm/sec)   p_kst 4.698413e-04   p_cons 9.050841e-01   p_joint 4.698413e-04

Joint ci ratio: 2.258917e-01	ci left: 4.172124e-04	ci right 5.248933e-04	k: 300	n:640000
Cons ci ratio: 1.587119e-03	ci left: 9.043292e-01	ci right 9.057671e-01	k: 579232	n:640000
KS ci ratio: 2.258917e-01	ci left: 4.172124e-04	ci right 5.248933e-04	k: 300	n:640000
NASP   640000 perm   306 sec   (2091 perm/sec)   p_kst 4.687500e-04   p_cons 9.050500e-01   p_joint 4.687500e-04

Joint ci ratio: 2.233096e-01	ci left: 4.209573e-04	ci right 5.281920e-04	k: 307	n:650000
Cons ci ratio: 1.574969e-03	ci left: 9.043232e-01	ci right 9.057501e-01	k: 588275	n:650000
KS ci ratio: 2.233096e-01	ci left: 4.209573e-04	ci right 5.281920e-04	k: 307	n:650000
NASP   650000 perm   314 sec   (2073 perm/sec)   p_kst 4.723077e-04   p_cons 9.050385e-01   p_joint 4.723077e-04

Joint ci ratio: 2.218737e-01	ci left: 4.203018e-04	ci right 5.265870e-04	k: 311	n:660000
Cons ci ratio: 1.563272e-03	ci left: 9.042977e-01	ci right 9.057139e-01	k: 597305	n:660000
KS ci ratio: 2.218737e-01	ci left: 4.203018e-04	ci right 5.265870e-04	k: 311	n:660000
NASP   660000 perm   321 sec   (2056 perm/sec)   p_kst 4.712121e-04   p_cons 9.050076e-01   p_joint 4.712121e-04

Joint ci ratio: 2.215196e-01	ci left: 4.154382e-04	ci right 5.203030e-04	k: 312	n:670000
Cons ci ratio: 1.551832e-03	ci left: 9.042729e-01	ci right 9.056788e-01	k: 606335	n:670000
KS ci ratio: 2.215196e-01	ci left: 4.154382e-04	ci right 5.203030e-04	k: 312	n:670000
NASP   670000 perm   329 sec   (2037 perm/sec)   p_kst 4.656716e-04   p_cons 9.049776e-01   p_joint 4.656716e-04

Joint ci ratio: 2.194262e-01	ci left: 4.176652e-04	ci right 5.219614e-04	k: 318	n:680000
Cons ci ratio: 1.540284e-03	ci left: 9.042888e-01	ci right 9.056842e-01	k: 615392	n:680000
KS ci ratio: 2.194262e-01	ci left: 4.176652e-04	ci right 5.219614e-04	k: 318	n:680000
NASP   680000 perm   336 sec   (2021 perm/sec)   p_kst 4.676471e-04   p_cons 9.049882e-01   p_joint 4.676471e-04

Joint ci ratio: 2.184019e-01	ci left: 4.157214e-04	ci right 5.189827e-04	k: 321	n:690000
Cons ci ratio: 1.529235e-03	ci left: 9.042766e-01	ci right 9.056620e-01	k: 624430	n:690000
KS ci ratio: 2.184019e-01	ci left: 4.157214e-04	ci right 5.189827e-04	k: 321	n:690000
NASP   690000 perm   344 sec   (2004 perm/sec)   p_kst 4.652174e-04   p_cons 9.049710e-01   p_joint 4.652174e-04

Joint ci ratio: 2.173918e-01	ci left: 4.138343e-04	ci right 5.160879e-04	k: 324	n:700000
Cons ci ratio: 1.518483e-03	ci left: 9.042577e-01	ci right 9.056332e-01	k: 633463	n:700000
KS ci ratio: 2.173918e-01	ci left: 4.138343e-04	ci right 5.160879e-04	k: 324	n:700000
NASP   700000 perm   352 sec   (1988 perm/sec)   p_kst 4.628571e-04   p_cons 9.049471e-01   p_joint 4.628571e-04

Joint ci ratio: 2.138028e-01	ci left: 4.226624e-04	ci right 5.251470e-04	k: 335	n:710000
Cons ci ratio: 1.508041e-03	ci left: 9.042294e-01	ci right 9.055954e-01	k: 642489	n:710000
KS ci ratio: 2.138028e-01	ci left: 4.226624e-04	ci right 5.251470e-04	k: 335	n:710000
NASP   710000 perm   360 sec   (1972 perm/sec)   p_kst 4.718310e-04   p_cons 9.049141e-01   p_joint 4.718310e-04

Joint ci ratio: 2.131697e-01	ci left: 4.194212e-04	ci right 5.207795e-04	k: 337	n:720000
Cons ci ratio: 1.497715e-03	ci left: 9.042131e-01	ci right 9.055697e-01	k: 651523	n:720000
KS ci ratio: 2.131697e-01	ci left: 4.194212e-04	ci right 5.207795e-04	k: 337	n:720000
NASP   720000 perm   368 sec   (1956 perm/sec)   p_kst 4.680556e-04   p_cons 9.048931e-01   p_joint 4.680556e-04

Joint ci ratio: 2.113023e-01	ci left: 4.214581e-04	ci right 5.223008e-04	k: 343	n:730000
Cons ci ratio: 1.487622e-03	ci left: 9.041945e-01	ci right 9.055420e-01	k: 660555	n:730000
KS ci ratio: 2.113023e-01	ci left: 4.214581e-04	ci right 5.223008e-04	k: 343	n:730000
NASP   730000 perm   376 sec   (1941 perm/sec)   p_kst 4.698630e-04   p_cons 9.048699e-01   p_joint 4.698630e-04

Joint ci ratio: 2.100845e-01	ci left: 4.208829e-04	ci right 5.209329e-04	k: 347	n:740000
Cons ci ratio: 1.477521e-03	ci left: 9.042009e-01	ci right 9.055392e-01	k: 669605	n:740000
KS ci ratio: 2.100845e-01	ci left: 4.208829e-04	ci right 5.209329e-04	k: 347	n:740000
NASP   740000 perm   384 sec   (1926 perm/sec)   p_kst 4.689189e-04   p_cons 9.048716e-01   p_joint 4.689189e-04

Joint ci ratio: 2.091850e-01	ci left: 4.190611e-04	ci right 5.181969e-04	k: 350	n:750000
Cons ci ratio: 1.467271e-03	ci left: 9.042486e-01	ci right 9.055776e-01	k: 678686	n:750000
KS ci ratio: 2.091850e-01	ci left: 4.190611e-04	ci right 5.181969e-04	k: 350	n:750000
NASP   750000 perm   393 sec   (1910 perm/sec)   p_kst 4.666667e-04   p_cons 9.049147e-01   p_joint 4.666667e-04

Joint ci ratio: 2.085920e-01	ci left: 4.160410e-04	ci right 5.141477e-04	k: 352	n:760000
Cons ci ratio: 1.457264e-03	ci left: 9.042911e-01	ci right 9.056111e-01	k: 687764	n:760000
KS ci ratio: 2.085920e-01	ci left: 4.160410e-04	ci right 5.141477e-04	k: 352	n:760000
NASP   760000 perm   402 sec   (1892 perm/sec)   p_kst 4.631579e-04   p_cons 9.049526e-01   p_joint 4.631579e-04

Joint ci ratio: 2.062673e-01	ci left: 4.204880e-04	ci right 5.183988e-04	k: 360	n:770000
Cons ci ratio: 1.447579e-03	ci left: 9.043182e-01	ci right 9.056294e-01	k: 696831	n:770000
KS ci ratio: 2.062673e-01	ci left: 4.204880e-04	ci right 5.183988e-04	k: 360	n:770000
NASP   770000 perm   410 sec   (1877 perm/sec)   p_kst 4.675325e-04   p_cons 9.049753e-01   p_joint 4.675325e-04

Joint ci ratio: 2.051340e-01	ci left: 4.199611e-04	ci right 5.171447e-04	k: 364	n:780000
Cons ci ratio: 1.438096e-03	ci left: 9.043433e-01	ci right 9.056460e-01	k: 705897	n:780000
KS ci ratio: 2.051340e-01	ci left: 4.199611e-04	ci right 5.171447e-04	k: 364	n:780000
NASP   780000 perm   419 sec   (1862 perm/sec)   p_kst 4.666667e-04   p_cons 9.049962e-01   p_joint 4.666667e-04

Joint ci ratio: 2.045747e-01	ci left: 4.170469e-04	ci right 5.132600e-04	k: 366	n:790000
Cons ci ratio: 1.429070e-03	ci left: 9.043348e-01	ci right 9.056293e-01	k: 714937	n:790000
KS ci ratio: 2.045747e-01	ci left: 4.170469e-04	ci right 5.132600e-04	k: 366	n:790000
NASP   790000 perm   427 sec   (1849 perm/sec)   p_kst 4.632911e-04   p_cons 9.049835e-01   p_joint 4.632911e-04

Joint ci ratio: 2.018426e-01	ci left: 4.236980e-04	ci right 5.199792e-04	k: 376	n:800000
Cons ci ratio: 1.420603e-03	ci left: 9.042789e-01	ci right 9.055657e-01	k: 723939	n:800000
KS ci ratio: 2.018426e-01	ci left: 4.236980e-04	ci right 5.199792e-04	k: 376	n:800000
NASP   800000 perm   436 sec   (1836 perm/sec)   p_kst 4.700000e-04   p_cons 9.049238e-01   p_joint 4.700000e-04

Joint ci ratio: 1.994751e-01	ci left: 4.290201e-04	ci right 5.252281e-04	k: 385	n:810000
Cons ci ratio: 1.412144e-03	ci left: 9.042418e-01	ci right 9.055208e-01	k: 732955	n:810000
KS ci ratio: 1.994751e-01	ci left: 4.290201e-04	ci right 5.252281e-04	k: 385	n:810000
NASP   810000 perm   444 sec   (1824 perm/sec)   p_kst 4.753086e-04   p_cons 9.048827e-01   p_joint 4.753086e-04

Joint ci ratio: 1.987046e-01	ci left: 4.272643e-04	ci right 5.226636e-04	k: 388	n:820000
Cons ci ratio: 1.403912e-03	ci left: 9.041957e-01	ci right 9.054672e-01	k: 741963	n:820000
KS ci ratio: 1.987046e-01	ci left: 4.272643e-04	ci right 5.226636e-04	k: 388	n:820000
NASP   820000 perm   453 sec   (1810 perm/sec)   p_kst 4.731707e-04   p_cons 9.048329e-01   p_joint 4.731707e-04

Joint ci ratio: 1.976909e-01	ci left: 4.266966e-04	ci right 5.214246e-04	k: 392	n:830000
Cons ci ratio: 1.395823e-03	ci left: 9.041509e-01	ci right 9.054150e-01	k: 750971	n:830000
KS ci ratio: 1.976909e-01	ci left: 4.266966e-04	ci right 5.214246e-04	k: 392	n:830000
NASP   830000 perm   462 sec   (1798 perm/sec)   p_kst 4.722892e-04   p_cons 9.047843e-01   p_joint 4.722892e-04

Joint ci ratio: 1.964452e-01	ci left: 4.272756e-04	ci right 5.214629e-04	k: 397	n:840000
Cons ci ratio: 1.387718e-03	ci left: 9.041262e-01	ci right 9.053829e-01	k: 759995	n:840000
KS ci ratio: 1.964452e-01	ci left: 4.272756e-04	ci right 5.214629e-04	k: 397	n:840000
NASP   840000 perm   472 sec   (1781 perm/sec)   p_kst 4.726190e-04   p_cons 9.047560e-01   p_joint 4.726190e-04

Joint ci ratio: 1.959538e-01	ci left: 4.244862e-04	ci right 5.177965e-04	k: 399	n:850000
Cons ci ratio: 1.380073e-03	ci left: 9.040620e-01	ci right 9.053117e-01	k: 768985	n:850000
KS ci ratio: 1.959538e-01	ci left: 4.244862e-04	ci right 5.177965e-04	k: 399	n:850000
NASP   850000 perm   481 sec   (1768 perm/sec)   p_kst 4.694118e-04   p_cons 9.046882e-01   p_joint 4.694118e-04

Joint ci ratio: 1.937853e-01	ci left: 4.295049e-04	ci right 5.227505e-04	k: 408	n:860000
Cons ci ratio: 1.372228e-03	ci left: 9.040402e-01	ci right 9.052827e-01	k: 778010	n:860000
KS ci ratio: 1.937853e-01	ci left: 4.295049e-04	ci right 5.227505e-04	k: 408	n:860000
NASP   860000 perm   490 sec   (1756 perm/sec)   p_kst 4.744186e-04   p_cons 9.046628e-01   p_joint 4.744186e-04

Joint ci ratio: 1.930787e-01	ci left: 4.278493e-04	ci right 5.203570e-04	k: 411	n:870000
Cons ci ratio: 1.364043e-03	ci left: 9.040788e-01	ci right 9.053139e-01	k: 787087	n:870000
KS ci ratio: 1.930787e-01	ci left: 4.278493e-04	ci right 5.203570e-04	k: 411	n:870000
NASP   870000 perm   499 sec   (1744 perm/sec)   p_kst 4.724138e-04   p_cons 9.046977e-01   p_joint 4.724138e-04

Joint ci ratio: 1.921483e-01	ci left: 4.273137e-04	ci right 5.192082e-04	k: 415	n:880000
Cons ci ratio: 1.355895e-03	ci left: 9.041302e-01	ci right 9.053580e-01	k: 796176	n:880000
KS ci ratio: 1.921483e-01	ci left: 4.273137e-04	ci right 5.192082e-04	k: 415	n:880000
NASP   880000 perm   508 sec   (1732 perm/sec)   p_kst 4.715909e-04   p_cons 9.047455e-01   p_joint 4.715909e-04

Joint ci ratio: 1.905515e-01	ci left: 4.300009e-04	ci right 5.216159e-04	k: 422	n:890000
Cons ci ratio: 1.348058e-03	ci left: 9.041591e-01	ci right 9.053799e-01	k: 805246	n:890000
KS ci ratio: 1.905515e-01	ci left: 4.300009e-04	ci right 5.216159e-04	k: 422	n:890000
NASP   890000 perm   517 sec   (1720 perm/sec)   p_kst 4.741573e-04   p_cons 9.047708e-01   p_joint 4.741573e-04

Joint ci ratio: 1.896570e-01	ci left: 4.294560e-04	ci right 5.204759e-04	k: 426	n:900000
Cons ci ratio: 1.340821e-03	ci left: 9.041272e-01	ci right 9.053413e-01	k: 814262	n:900000
KS ci ratio: 1.896570e-01	ci left: 4.294560e-04	ci right 5.204759e-04	k: 426	n:900000
NASP   900000 perm   527 sec   (1709 perm/sec)   p_kst 4.733333e-04   p_cons 9.047356e-01   p_joint 4.733333e-04

Joint ci ratio: 1.883383e-01	ci left: 4.310182e-04	ci right 5.216613e-04	k: 432	n:910000
Cons ci ratio: 1.334125e-03	ci left: 9.040409e-01	ci right 9.052489e-01	k: 823228	n:910000
KS ci ratio: 1.883383e-01	ci left: 4.310182e-04	ci right 5.216613e-04	k: 432	n:910000
NASP   910000 perm   536 sec   (1698 perm/sec)   p_kst 4.747253e-04   p_cons 9.046462e-01   p_joint 4.747253e-04

Joint ci ratio: 1.874744e-01	ci left: 4.304765e-04	ci right 5.205432e-04	k: 436	n:920000
Cons ci ratio: 1.327009e-03	ci left: 9.040241e-01	ci right 9.052256e-01	k: 832256	n:920000
KS ci ratio: 1.874744e-01	ci left: 4.304765e-04	ci right 5.205432e-04	k: 436	n:920000
NASP   920000 perm   545 sec   (1687 perm/sec)   p_kst 4.739130e-04   p_cons 9.046261e-01   p_joint 4.739130e-04

Joint ci ratio: 1.862004e-01	ci left: 4.319976e-04	ci right 5.216990e-04	k: 442	n:930000
Cons ci ratio: 1.319923e-03	ci left: 9.040184e-01	ci right 9.052135e-01	k: 841294	n:930000
KS ci ratio: 1.862004e-01	ci left: 4.319976e-04	ci right 5.216990e-04	k: 442	n:930000
NASP   930000 perm   555 sec   (1677 perm/sec)   p_kst 4.752688e-04   p_cons 9.046172e-01   p_joint 4.752688e-04

Joint ci ratio: 1.843369e-01	ci left: 4.365324e-04	ci right 5.261669e-04	k: 451	n:940000
Cons ci ratio: 1.312893e-03	ci left: 9.040204e-01	ci right 9.052091e-01	k: 850339	n:940000
KS ci ratio: 1.843369e-01	ci left: 4.365324e-04	ci right 5.261669e-04	k: 451	n:940000
NASP   940000 perm   564 sec   (1665 perm/sec)   p_kst 4.797872e-04   p_cons 9.046160e-01   p_joint 4.797872e-04

Joint ci ratio: 1.837283e-01	ci left: 4.349497e-04	ci right 5.239315e-04	k: 454	n:950000
Cons ci ratio: 1.306245e-03	ci left: 9.039864e-01	ci right 9.051690e-01	k: 859350	n:950000
KS ci ratio: 1.837283e-01	ci left: 4.349497e-04	ci right 5.239315e-04	k: 454	n:950000
NASP   950000 perm   575 sec   (1653 perm/sec)   p_kst 4.778947e-04   p_cons 9.045789e-01   p_joint 4.778947e-04

Joint ci ratio: 1.829261e-01	ci left: 4.343944e-04	ci right 5.228316e-04	k: 458	n:960000
Cons ci ratio: 1.299555e-03	ci left: 9.039720e-01	ci right 9.051485e-01	k: 868379	n:960000
KS ci ratio: 1.829261e-01	ci left: 4.343944e-04	ci right 5.228316e-04	k: 458	n:960000
NASP   960000 perm   585 sec   (1642 perm/sec)   p_kst 4.770833e-04   p_cons 9.045615e-01   p_joint 4.770833e-04

Joint ci ratio: 1.815468e-01	ci left: 4.368035e-04	ci right 5.249868e-04	k: 465	n:970000
Cons ci ratio: 1.292659e-03	ci left: 9.039992e-01	ci right 9.051695e-01	k: 877448	n:970000
KS ci ratio: 1.815468e-01	ci left: 4.368035e-04	ci right 5.249868e-04	k: 465	n:970000
NASP   970000 perm   595 sec   (1630 perm/sec)   p_kst 4.793814e-04   p_cons 9.045856e-01   p_joint 4.793814e-04

Joint ci ratio: 1.809654e-01	ci left: 4.352686e-04	ci right 5.228298e-04	k: 468	n:980000
Cons ci ratio: 1.285802e-03	ci left: 9.040351e-01	ci right 9.051992e-01	k: 886526	n:980000
KS ci ratio: 1.809654e-01	ci left: 4.352686e-04	ci right 5.228298e-04	k: 468	n:980000
NASP   980000 perm   605 sec   (1620 perm/sec)   p_kst 4.775510e-04   p_cons 9.046184e-01   p_joint 4.775510e-04

Joint ci ratio: 1.805810e-01	ci left: 4.328007e-04	ci right 5.196603e-04	k: 470	n:990000
Cons ci ratio: 1.279076e-03	ci left: 9.040672e-01	ci right 9.052253e-01	k: 895601	n:990000
KS ci ratio: 1.805810e-01	ci left: 4.328007e-04	ci right 5.196603e-04	k: 470	n:990000
NASP   990000 perm   615 sec   (1609 perm/sec)   p_kst 4.747475e-04   p_cons 9.046475e-01   p_joint 4.747475e-04

Joint ci ratio: 1.794416e-01	ci left: 4.342024e-04	ci right 5.207337e-04	k: 476	n:1000000
Cons ci ratio: 1.272646e-03	ci left: 9.040727e-01	ci right 9.052250e-01	k: 904650	n:1000000
KS ci ratio: 1.794416e-01	ci left: 4.342024e-04	ci right 5.207337e-04	k: 476	n:1000000
NASP   1000000 perm   625 sec   (1599 perm/sec)   p_kst 4.760000e-04   p_cons 9.046500e-01   p_joint 4.760000e-04

Joint ci ratio: 1.779552e-01	ci left: 4.374699e-04	ci right 5.238526e-04	k: 484	n:1010000
Cons ci ratio: 1.266413e-03	ci left: 9.040641e-01	ci right 9.052108e-01	k: 913685	n:1010000
KS ci ratio: 1.779552e-01	ci left: 4.374699e-04	ci right 5.238526e-04	k: 484	n:1010000
NASP   1010000 perm   635 sec   (1590 perm/sec)   p_kst 4.792079e-04   p_cons 9.046386e-01   p_joint 4.792079e-04

Joint ci ratio: 1.768645e-01	ci left: 4.388022e-04	ci right 5.248600e-04	k: 490	n:1020000
Cons ci ratio: 1.260121e-03	ci left: 9.040764e-01	ci right 9.052174e-01	k: 922741	n:1020000
KS ci ratio: 1.768645e-01	ci left: 4.388022e-04	ci right 5.248600e-04	k: 490	n:1020000
NASP   1020000 perm   645 sec   (1580 perm/sec)   p_kst 4.803922e-04   p_cons 9.046480e-01   p_joint 4.803922e-04

Joint ci ratio: 1.761485e-01	ci left: 4.382539e-04	ci right 5.238192e-04	k: 494	n:1030000
Cons ci ratio: 1.254000e-03	ci left: 9.040778e-01	ci right 9.052132e-01	k: 931786	n:1030000
KS ci ratio: 1.761485e-01	ci left: 4.382539e-04	ci right 5.238192e-04	k: 494	n:1030000
NASP   1030000 perm   656 sec   (1570 perm/sec)   p_kst 4.796117e-04   p_cons 9.046466e-01   p_joint 4.796117e-04

Joint ci ratio: 1.754411e-01	ci left: 4.377168e-04	ci right 5.227977e-04	k: 498	n:1040000
Cons ci ratio: 1.248314e-03	ci left: 9.040309e-01	ci right 9.051611e-01	k: 940781	n:1040000
KS ci ratio: 1.754411e-01	ci left: 4.377168e-04	ci right 5.227977e-04	k: 498	n:1040000
NASP   1040000 perm   668 sec   (1556 perm/sec)   p_kst 4.788462e-04   p_cons 9.045971e-01   p_joint 4.788462e-04

Joint ci ratio: 1.747422e-01	ci left: 4.371906e-04	ci right 5.217950e-04	k: 502	n:1050000
Cons ci ratio: 1.242013e-03	ci left: 9.040814e-01	ci right 9.052059e-01	k: 949877	n:1050000
KS ci ratio: 1.747422e-01	ci left: 4.371906e-04	ci right 5.217950e-04	k: 502	n:1050000
NASP   1050000 perm   679 sec   (1546 perm/sec)   p_kst 4.780952e-04   p_cons 9.046448e-01   p_joint 4.780952e-04

Joint ci ratio: 1.738801e-01	ci left: 4.375774e-04	ci right 5.217950e-04	k: 507	n:1060000
Cons ci ratio: 1.236177e-03	ci left: 9.040789e-01	ci right 9.051981e-01	k: 958918	n:1060000
KS ci ratio: 1.738801e-01	ci left: 4.375774e-04	ci right 5.217950e-04	k: 507	n:1060000
NASP   1060000 perm   690 sec   (1536 perm/sec)   p_kst 4.783019e-04   p_cons 9.046396e-01   p_joint 4.783019e-04

Joint ci ratio: 1.730307e-01	ci left: 4.379579e-04	ci right 5.217940e-04	k: 512	n:1070000
Cons ci ratio: 1.230536e-03	ci left: 9.040606e-01	ci right 9.051746e-01	k: 967942	n:1070000
KS ci ratio: 1.730307e-01	ci left: 4.379579e-04	ci right 5.217940e-04	k: 512	n:1070000
NASP   1070000 perm   701 sec   (1527 perm/sec)   p_kst 4.785047e-04   p_cons 9.046187e-01   p_joint 4.785047e-04

Joint ci ratio: 1.721935e-01	ci left: 4.383324e-04	ci right 5.217920e-04	k: 517	n:1080000
Cons ci ratio: 1.224709e-03	ci left: 9.040797e-01	ci right 9.051885e-01	k: 977006	n:1080000
KS ci ratio: 1.721935e-01	ci left: 4.383324e-04	ci right 5.217920e-04	k: 517	n:1080000
NASP   1080000 perm   712 sec   (1516 perm/sec)   p_kst 4.787037e-04   p_cons 9.046352e-01   p_joint 4.787037e-04

Joint ci ratio: 1.708788e-01	ci left: 4.413354e-04	ci right 5.246591e-04	k: 525	n:1090000
Cons ci ratio: 1.218866e-03	ci left: 9.041123e-01	ci right 9.052158e-01	k: 986085	n:1090000
KS ci ratio: 1.708788e-01	ci left: 4.413354e-04	ci right 5.246591e-04	k: 525	n:1090000
NASP   1090000 perm   723 sec   (1507 perm/sec)   p_kst 4.816514e-04   p_cons 9.046651e-01   p_joint 4.816514e-04

Joint ci ratio: 1.697528e-01	ci left: 4.434157e-04	ci right 5.265240e-04	k: 532	n:1100000
Cons ci ratio: 1.213349e-03	ci left: 9.041097e-01	ci right 9.052082e-01	k: 995126	n:1100000
KS ci ratio: 1.697528e-01	ci left: 4.434157e-04	ci right 5.265240e-04	k: 532	n:1100000
NASP   1100000 perm   734 sec   (1498 perm/sec)   p_kst 4.836364e-04   p_cons 9.046600e-01   p_joint 4.836364e-04

Joint ci ratio: 1.686488e-01	ci left: 4.454602e-04	ci right 5.283536e-04	k: 539	n:1110000
Cons ci ratio: 1.207850e-03	ci left: 9.041152e-01	ci right 9.052088e-01	k: 1004176	n:1110000
KS ci ratio: 1.686488e-01	ci left: 4.454602e-04	ci right 5.283536e-04	k: 539	n:1110000
NASP   1110000 perm   745 sec   (1490 perm/sec)   p_kst 4.855856e-04   p_cons 9.046631e-01   p_joint 4.855856e-04

Joint ci ratio: 1.680277e-01	ci left: 4.449039e-04	ci right 5.273580e-04	k: 543	n:1120000
Cons ci ratio: 1.202257e-03	ci left: 9.041449e-01	ci right 9.052334e-01	k: 1013253	n:1120000
KS ci ratio: 1.680277e-01	ci left: 4.449039e-04	ci right 5.273580e-04	k: 543	n:1120000
NASP   1120000 perm   756 sec   (1482 perm/sec)   p_kst 4.848214e-04   p_cons 9.046902e-01   p_joint 4.848214e-04

Joint ci ratio: 8.197645e-02	ci left: 1.936665e-03	ci right 2.103072e-03	k: 2281	n:1130000
Cons ci ratio: 1.196832e-03	ci left: 9.041607e-01	ci right 9.052443e-01	k: 1022315	n:1130000
KS ci ratio: 1.674134e-01	ci left: 4.443579e-04	ci right 5.263794e-04	k: 547	n:1130000
NASP   1130000 perm   766 sec   (1474 perm/sec)   p_kst 4.840708e-04   p_cons 9.047035e-01   p_joint 2.018584e-03

Joint ci ratio: 8.156633e-02	ci left: 1.939440e-03	ci right 2.105211e-03	k: 2304	n:1140000
Cons ci ratio: 1.191602e-03	ci left: 9.041586e-01	ci right 9.052375e-01	k: 1031357	n:1140000
KS ci ratio: 1.662044e-01	ci left: 4.471847e-04	ci right 5.290722e-04	k: 555	n:1140000
NASP   1140000 perm   777 sec   (1467 perm/sec)   p_kst 4.868421e-04   p_cons 9.046991e-01   p_joint 2.021053e-03

Joint ci ratio: 8.107511e-02	ci left: 1.946428e-03	ci right 2.111748e-03	k: 2332	n:1150000
Cons ci ratio: 1.186511e-03	ci left: 9.041462e-01	ci right 9.052205e-01	k: 1040387	n:1150000
KS ci ratio: 1.647293e-01	ci left: 4.516318e-04	ci right 5.335268e-04	k: 565	n:1150000
NASP   1150000 perm   788 sec   (1459 perm/sec)   p_kst 4.913043e-04   p_cons 9.046843e-01   p_joint 2.027826e-03

Joint ci ratio: 8.074702e-02	ci left: 1.945697e-03	ci right 2.110254e-03	k: 2351	n:1160000
Cons ci ratio: 1.181350e-03	ci left: 9.041538e-01	ci right 9.052234e-01	k: 1049440	n:1160000
KS ci ratio: 1.644392e-01	ci left: 4.493915e-04	ci right 5.307226e-04	k: 567	n:1160000
NASP   1160000 perm   799 sec   (1451 perm/sec)   p_kst 4.887931e-04   p_cons 9.046897e-01   p_joint 2.026724e-03

Joint ci ratio: 8.043988e-02	ci left: 1.944141e-03	ci right 2.107912e-03	k: 2369	n:1170000
Cons ci ratio: 1.176529e-03	ci left: 9.041211e-01	ci right 9.051863e-01	k: 1058446	n:1170000
KS ci ratio: 1.637202e-01	ci left: 4.496485e-04	ci right 5.306354e-04	k: 572	n:1170000
NASP   1170000 perm   810 sec   (1444 perm/sec)   p_kst 4.888889e-04   p_cons 9.046547e-01   p_joint 2.024786e-03

Joint ci ratio: 7.993522e-02	ci left: 1.952580e-03	ci right 2.115981e-03	k: 2399	n:1180000
Cons ci ratio: 1.171697e-03	ci left: 9.040991e-01	ci right 9.051599e-01	k: 1067464	n:1180000
KS ci ratio: 1.627291e-01	ci left: 4.515279e-04	ci right 5.323127e-04	k: 579	n:1180000
NASP   1180000 perm   822 sec   (1436 perm/sec)   p_kst 4.906780e-04   p_cons 9.046305e-01   p_joint 2.033051e-03

Joint ci ratio: 7.955484e-02	ci left: 1.955114e-03	ci right 2.117913e-03	k: 2422	n:1190000
Cons ci ratio: 1.166811e-03	ci left: 9.040944e-01	ci right 9.051507e-01	k: 1076502	n:1190000
KS ci ratio: 1.617557e-01	ci left: 4.533771e-04	ci right 5.339604e-04	k: 586	n:1190000
NASP   1190000 perm   833 sec   (1428 perm/sec)   p_kst 4.924370e-04   p_cons 9.046235e-01   p_joint 2.035294e-03

Joint ci ratio: 7.911504e-02	ci left: 1.960875e-03	ci right 2.123210e-03	k: 2449	n:1200000
Cons ci ratio: 1.162047e-03	ci left: 9.040805e-01	ci right 9.051325e-01	k: 1085529	n:1200000
KS ci ratio: 1.609353e-01	ci left: 4.543971e-04	ci right 5.347124e-04	k: 592	n:1200000
NASP   1200000 perm   845 sec   (1421 perm/sec)   p_kst 4.933333e-04   p_cons 9.046075e-01   p_joint 2.040833e-03

Joint ci ratio: 7.874619e-02	ci left: 1.963303e-03	ci right 2.125046e-03	k: 2472	n:1210000
Cons ci ratio: 1.157291e-03	ci left: 9.040744e-01	ci right 9.051220e-01	k: 1094565	n:1210000
KS ci ratio: 1.597275e-01	ci left: 4.577814e-04	ci right 5.380295e-04	k: 601	n:1210000
NASP   1210000 perm   856 sec   (1413 perm/sec)   p_kst 4.966942e-04   p_cons 9.045992e-01   p_joint 2.042975e-03

Joint ci ratio: 7.824124e-02	ci left: 1.972925e-03	ci right 2.134371e-03	k: 2504	n:1220000
Cons ci ratio: 1.152439e-03	ci left: 9.040913e-01	ci right 9.051346e-01	k: 1103629	n:1220000
KS ci ratio: 1.585464e-01	ci left: 4.611124e-04	ci right 5.412899e-04	k: 610	n:1220000
NASP   1220000 perm   868 sec   (1406 perm/sec)   p_kst 5.000000e-04   p_cons 9.046139e-01   p_joint 2.052459e-03

Joint ci ratio: 7.793077e-02	ci left: 1.972828e-03	ci right 2.133596e-03	k: 2524	n:1230000
Cons ci ratio: 1.147778e-03	ci left: 9.040884e-01	ci right 9.051275e-01	k: 1112669	n:1230000
KS ci ratio: 1.579017e-01	ci left: 4.612676e-04	ci right 5.411150e-04	k: 615	n:1230000
NASP   1230000 perm   880 sec   (1398 perm/sec)   p_kst 5.000000e-04   p_cons 9.046089e-01   p_joint 2.052033e-03

Joint ci ratio: 7.768517e-02	ci left: 1.969570e-03	ci right 2.129544e-03	k: 2540	n:1240000
Cons ci ratio: 1.143323e-03	ci left: 9.040630e-01	ci right 9.050980e-01	k: 1121681	n:1240000
KS ci ratio: 1.576462e-01	ci left: 4.590969e-04	ci right 5.384278e-04	k: 617	n:1240000
NASP   1240000 perm   898 sec   (1381 perm/sec)   p_kst 4.975806e-04   p_cons 9.045815e-01   p_joint 2.048387e-03

Joint ci ratio: 7.730567e-02	ci left: 1.973426e-03	ci right 2.132895e-03	k: 2565	n:1250000
Cons ci ratio: 1.138660e-03	ci left: 9.040773e-01	ci right 9.051081e-01	k: 1130742	n:1250000
KS ci ratio: 1.568864e-01	ci left: 4.600353e-04	ci right 5.391091e-04	k: 623	n:1250000
NASP   1250000 perm   910 sec   (1374 perm/sec)   p_kst 4.984000e-04   p_cons 9.045936e-01   p_joint 2.052000e-03

Joint ci ratio: 7.696145e-02	ci left: 1.975666e-03	ci right 2.134573e-03	k: 2588	n:1260000
Cons ci ratio: 1.133955e-03	ci left: 9.041064e-01	ci right 9.051330e-01	k: 1139822	n:1260000
KS ci ratio: 1.563860e-01	ci left: 4.594344e-04	ci right 5.381294e-04	k: 627	n:1260000
NASP   1260000 perm   922 sec   (1366 perm/sec)   p_kst 4.976190e-04   p_cons 9.046206e-01   p_joint 2.053968e-03

Joint ci ratio: 9.412730e-02	ci left: 1.299573e-03	ci right 1.428702e-03	k: 1731	n:1270000
Cons ci ratio: 1.129400e-03	ci left: 9.041209e-01	ci right 9.051434e-01	k: 1148884	n:1270000
KS ci ratio: 1.563863e-01	ci left: 4.558167e-04	ci right 5.338922e-04	k: 627	n:1270000
NASP   1270000 perm   934 sec   (1359 perm/sec)   p_kst 4.937008e-04   p_cons 9.046331e-01   p_joint 1.362992e-03

Joint ci ratio: 9.374916e-02	ci left: 1.300101e-03	ci right 1.428735e-03	k: 1745	n:1280000
Cons ci ratio: 1.125282e-03	ci left: 9.040765e-01	ci right 9.050951e-01	k: 1157871	n:1280000
KS ci ratio: 1.557674e-01	ci left: 4.560093e-04	ci right 5.337799e-04	k: 632	n:1280000
NASP   1280000 perm   947 sec   (1351 perm/sec)   p_kst 4.937500e-04   p_cons 9.045867e-01   p_joint 1.363281e-03

Joint ci ratio: 8.769571e-02	ci left: 1.478677e-03	ci right 1.615049e-03	k: 1994	n:1290000
Cons ci ratio: 1.120982e-03	ci left: 9.040677e-01	ci right 9.050824e-01	k: 1166903	n:1290000
KS ci ratio: 1.549131e-01	ci left: 4.576898e-04	ci right 5.352791e-04	k: 639	n:1290000
NASP   1290000 perm   963 sec   (1339 perm/sec)   p_kst 4.953488e-04   p_cons 9.045760e-01   p_joint 1.545736e-03

Joint ci ratio: 8.745509e-02	ci left: 1.475579e-03	ci right 1.611273e-03	k: 2005	n:1300000
Cons ci ratio: 1.116432e-03	ci left: 9.041053e-01	ci right 9.051160e-01	k: 1175995	n:1300000
KS ci ratio: 1.544313e-01	ci left: 4.571270e-04	ci right 5.343575e-04	k: 643	n:1300000
NASP   1300000 perm   978 sec   (1329 perm/sec)   p_kst 4.946154e-04   p_cons 9.046115e-01   p_joint 1.542308e-03

Joint ci ratio: 8.697922e-02	ci left: 1.480743e-03	ci right 1.616133e-03	k: 2027	n:1310000
Cons ci ratio: 1.111725e-03	ci left: 9.041752e-01	ci right 9.051817e-01	k: 1185130	n:1310000
KS ci ratio: 1.534808e-01	ci left: 4.595091e-04	ci right 5.366203e-04	k: 651	n:1310000
NASP   1310000 perm   992 sec   (1321 perm/sec)   p_kst 4.969466e-04   p_cons 9.046794e-01   p_joint 1.547328e-03

Joint ci ratio: 9.197476e-02	ci left: 1.311023e-03	ci right 1.438150e-03	k: 1813	n:1320000
Cons ci ratio: 1.107710e-03	ci left: 9.041454e-01	ci right 9.051483e-01	k: 1194135	n:1320000
KS ci ratio: 1.526633e-01	ci left: 4.611279e-04	ci right 5.380610e-04	k: 658	n:1320000
NASP   1320000 perm   1004 sec   (1315 perm/sec)   p_kst 4.984848e-04   p_cons 9.046477e-01   p_joint 1.373485e-03

Joint ci ratio: 9.167210e-02	ci left: 1.309981e-03	ci right 1.436567e-03	k: 1825	n:1330000
Cons ci ratio: 1.103621e-03	ci left: 9.041342e-01	ci right 9.051333e-01	k: 1203164	n:1330000
KS ci ratio: 1.519730e-01	ci left: 4.620001e-04	ci right 5.386985e-04	k: 664	n:1330000
NASP   1330000 perm   1016 sec   (1308 perm/sec)   p_kst 4.992481e-04   p_cons 9.046346e-01   p_joint 1.372180e-03

Joint ci ratio: 8.576112e-02	ci left: 1.489941e-03	ci right 1.624169e-03	k: 2085	n:1340000
Cons ci ratio: 1.099635e-03	ci left: 9.041141e-01	ci right 9.051095e-01	k: 1212181	n:1340000
KS ci ratio: 1.514049e-01	ci left: 4.621421e-04	ci right 5.385512e-04	k: 669	n:1340000
NASP   1340000 perm   1029 sec   (1302 perm/sec)   p_kst 4.992537e-04   p_cons 9.046127e-01   p_joint 1.555970e-03

Joint ci ratio: 7.399091e-02	ci left: 1.998030e-03	ci right 2.152267e-03	k: 2800	n:1350000
Cons ci ratio: 1.095598e-03	ci left: 9.041092e-01	ci right 9.051010e-01	k: 1221218	n:1350000
KS ci ratio: 1.506200e-01	ci left: 4.637081e-04	ci right 5.399429e-04	k: 676	n:1350000
NASP   1350000 perm   1042 sec   (1295 perm/sec)   p_kst 5.007407e-04   p_cons 9.046059e-01   p_joint 2.074074e-03

Joint ci ratio: 7.367585e-02	ci left: 2.000660e-03	ci right 2.154414e-03	k: 2824	n:1360000
Cons ci ratio: 1.091763e-03	ci left: 9.040793e-01	ci right 9.050676e-01	k: 1230221	n:1360000
KS ci ratio: 1.498472e-01	ci left: 4.652521e-04	ci right 5.413131e-04	k: 683	n:1360000
NASP   1360000 perm   1055 sec   (1289 perm/sec)   p_kst 5.022059e-04   p_cons 9.045743e-01   p_joint 2.076471e-03

Joint ci ratio: 7.335189e-02	ci left: 2.003969e-03	ci right 2.157272e-03	k: 2849	n:1370000
Cons ci ratio: 1.087894e-03	ci left: 9.040615e-01	ci right 9.050463e-01	k: 1239240	n:1370000
KS ci ratio: 1.494110e-01	ci left: 4.646665e-04	ci right 5.403908e-04	k: 687	n:1370000
NASP   1370000 perm   1068 sec   (1282 perm/sec)   p_kst 5.014599e-04   p_cons 9.045547e-01   p_joint 2.079562e-03

Joint ci ratio: 7.309588e-02	ci left: 2.003675e-03	ci right 2.156397e-03	k: 2869	n:1380000
Cons ci ratio: 1.083802e-03	ci left: 9.040861e-01	ci right 9.050672e-01	k: 1248317	n:1380000
KS ci ratio: 1.489786e-01	ci left: 4.640897e-04	ci right 5.394817e-04	k: 691	n:1380000
NASP   1380000 perm   1082 sec   (1275 perm/sec)   p_kst 5.007246e-04   p_cons 9.045775e-01   p_joint 2.078986e-03

Joint ci ratio: 7.288045e-02	ci left: 2.001267e-03	ci right 2.153337e-03	k: 2886	n:1390000
Cons ci ratio: 1.079895e-03	ci left: 9.040881e-01	ci right 9.050656e-01	k: 1257363	n:1390000
KS ci ratio: 1.486568e-01	ci left: 4.628288e-04	ci right 5.378391e-04	k: 694	n:1390000
NASP   1390000 perm   1095 sec   (1270 perm/sec)   p_kst 4.992806e-04   p_cons 9.045777e-01   p_joint 2.076259e-03

Joint ci ratio: 7.260431e-02	ci left: 2.002401e-03	ci right 2.153956e-03	k: 2908	n:1400000
Cons ci ratio: 1.076062e-03	ci left: 9.040850e-01	ci right 9.050591e-01	k: 1266402	n:1400000
KS ci ratio: 1.474939e-01	ci left: 4.670890e-04	ci right 5.421453e-04	k: 705	n:1400000
NASP   1400000 perm   1108 sec   (1263 perm/sec)   p_kst 5.035714e-04   p_cons 9.045729e-01   p_joint 2.077143e-03

Joint ci ratio: 7.241799e-02	ci left: 1.998645e-03	ci right 2.149511e-03	k: 2923	n:1410000
Cons ci ratio: 1.072194e-03	ci left: 9.040940e-01	ci right 9.050646e-01	k: 1275458	n:1410000
KS ci ratio: 1.468711e-01	ci left: 4.678749e-04	ci right 5.427122e-04	k: 711	n:1410000
NASP   1410000 perm   1122 sec   (1257 perm/sec)   p_kst 5.042553e-04   p_cons 9.045801e-01   p_joint 2.073050e-03

Joint ci ratio: 7.206131e-02	ci left: 2.004624e-03	ci right 2.155165e-03	k: 2952	n:1420000
Cons ci ratio: 1.068411e-03	ci left: 9.040959e-01	ci right 9.050630e-01	k: 1284504	n:1420000
KS ci ratio: 1.456485e-01	ci left: 4.727216e-04	ci right 5.476500e-04	k: 723	n:1420000
NASP   1420000 perm   1135 sec   (1251 perm/sec)   p_kst 5.091549e-04   p_cons 9.045803e-01   p_joint 2.078873e-03

Joint ci ratio: 7.169780e-02	ci left: 2.011208e-03	ci right 2.161450e-03	k: 2982	n:1430000
Cons ci ratio: 1.064789e-03	ci left: 9.040781e-01	ci right 9.050419e-01	k: 1293522	n:1430000
KS ci ratio: 1.446527e-01	ci left: 4.761549e-04	ci right 5.510670e-04	k: 733	n:1430000
NASP   1430000 perm   1148 sec   (1245 perm/sec)   p_kst 5.125874e-04   p_cons 9.045608e-01   p_joint 2.085315e-03

Joint ci ratio: 7.151836e-02	ci left: 2.007471e-03	ci right 2.157043e-03	k: 2997	n:1440000
Cons ci ratio: 1.060981e-03	ci left: 9.040968e-01	ci right 9.050572e-01	k: 1302592	n:1440000
KS ci ratio: 1.443580e-01	ci left: 4.748563e-04	ci right 5.493987e-04	k: 736	n:1440000
NASP   1440000 perm   1162 sec   (1239 perm/sec)   p_kst 5.111111e-04   p_cons 9.045778e-01   p_joint 2.081250e-03

Joint ci ratio: 8.224784e-02	ci left: 1.499793e-03	ci right 1.629108e-03	k: 2267	n:1450000
Cons ci ratio: 1.057264e-03	ci left: 9.041069e-01	ci right 9.050639e-01	k: 1311650	n:1450000
KS ci ratio: 1.438709e-01	ci left: 4.749054e-04	ci right 5.491823e-04	k: 741	n:1450000
NASP   1450000 perm   1175 sec   (1234 perm/sec)   p_kst 5.110345e-04   p_cons 9.045862e-01   p_joint 1.563448e-03

Joint ci ratio: 8.199520e-02	ci left: 1.498912e-03	ci right 1.627735e-03	k: 2281	n:1460000
Cons ci ratio: 1.053608e-03	ci left: 9.041134e-01	ci right 9.050672e-01	k: 1320703	n:1460000
KS ci ratio: 1.432926e-01	ci left: 4.756146e-04	ci right 5.496779e-04	k: 747	n:1460000
NASP   1460000 perm   1189 sec   (1228 perm/sec)   p_kst 5.116438e-04   p_cons 9.045911e-01   p_joint 1.562329e-03

Joint ci ratio: 8.165588e-02	ci left: 1.501376e-03	ci right 1.629852e-03	k: 2300	n:1470000
Cons ci ratio: 1.050075e-03	ci left: 9.041056e-01	ci right 9.050561e-01	k: 1329735	n:1470000
KS ci ratio: 1.427213e-01	ci left: 4.763147e-04	ci right 5.501661e-04	k: 753	n:1470000
NASP   1470000 perm   1203 sec   (1222 perm/sec)   p_kst 5.122449e-04   p_cons 9.045816e-01   p_joint 1.564626e-03

Joint ci ratio: 8.662416e-02	ci left: 1.321890e-03	ci right 1.442237e-03	k: 2044	n:1480000
Cons ci ratio: 9.564067e-04	ci left: 9.185931e-01	ci right 9.194728e-01	k: 1360170	n:1480000
KS ci ratio: 1.421568e-01	ci left: 4.770059e-04	ci right 5.506472e-04	k: 759	n:1480000
NASP   1480000 perm   1217 sec   (1217 perm/sec)   p_kst 5.128378e-04   p_cons 9.190338e-01   p_joint 1.381081e-03

Joint ci ratio: 7.512158e-02	ci left: 1.755621e-03	ci right 1.893307e-03	k: 2717	n:1490000
Cons ci ratio: 9.532019e-04	ci left: 9.185931e-01	ci right 9.194697e-01	k: 1369358	n:1490000
KS ci ratio: 1.412304e-01	ci left: 4.802781e-04	ci right 5.539007e-04	k: 769	n:1490000
NASP   1490000 perm   1230 sec   (1211 perm/sec)   p_kst 5.161074e-04   p_cons 9.190322e-01   p_joint 1.823490e-03

Joint ci ratio: 7.484667e-02	ci left: 1.757000e-03	ci right 1.894268e-03	k: 2737	n:1500000
Cons ci ratio: 9.500078e-04	ci left: 9.185963e-01	ci right 9.194701e-01	k: 1378551	n:1500000
KS ci ratio: 1.406833e-01	ci left: 4.809352e-04	ci right 5.543490e-04	k: 775	n:1500000
NASP   1500000 perm   1244 sec   (1205 perm/sec)   p_kst 5.166667e-04   p_cons 9.190340e-01   p_joint 1.824667e-03

Joint ci ratio: 7.465615e-02	ci left: 1.754463e-03	ci right 1.891168e-03	k: 2751	n:1510000
Cons ci ratio: 9.467951e-04	ci left: 9.186075e-01	ci right 9.194783e-01	k: 1387756	n:1510000
KS ci ratio: 1.403222e-01	ci left: 4.803061e-04	ci right 5.534199e-04	k: 779	n:1510000
NASP   1510000 perm   1259 sec   (1199 perm/sec)   p_kst 5.158940e-04   p_cons 9.190437e-01   p_joint 1.821854e-03

Joint ci ratio: 7.431918e-02	ci left: 1.759061e-03	ci right 1.895479e-03	k: 2776	n:1520000
Cons ci ratio: 9.438484e-04	ci left: 9.185816e-01	ci right 9.194497e-01	k: 1396905	n:1520000
KS ci ratio: 1.395194e-01	ci left: 4.828600e-04	ci right 5.559071e-04	k: 788	n:1520000
NASP   1520000 perm   1273 sec   (1194 perm/sec)   p_kst 5.184211e-04   p_cons 9.190164e-01   p_joint 1.826316e-03

Joint ci ratio: 8.505784e-02	ci left: 1.327298e-03	ci right 1.445844e-03	k: 2120	n:1530000
Cons ci ratio: 9.406562e-04	ci left: 9.185993e-01	ci right 9.194645e-01	k: 1406120	n:1530000
KS ci ratio: 1.392550e-01	ci left: 4.815964e-04	ci right 5.543029e-04	k: 791	n:1530000
NASP   1530000 perm   1287 sec   (1189 perm/sec)   p_kst 5.169935e-04   p_cons 9.190327e-01   p_joint 1.385621e-03

Joint ci ratio: 8.473876e-02	ci left: 1.328848e-03	ci right 1.447066e-03	k: 2136	n:1540000
Cons ci ratio: 9.377417e-04	ci left: 9.185777e-01	ci right 9.194402e-01	k: 1415275	n:1540000
KS ci ratio: 1.385569e-01	ci left: 4.834835e-04	ci right 5.560787e-04	k: 799	n:1540000
NASP   1540000 perm   1302 sec   (1183 perm/sec)   p_kst 5.188312e-04   p_cons 9.190097e-01   p_joint 1.387013e-03

Joint ci ratio: 7.359396e-02	ci left: 1.759843e-03	ci right 1.894933e-03	k: 2831	n:1550000
Cons ci ratio: 9.349107e-04	ci left: 9.185474e-01	ci right 9.194072e-01	k: 1424416	n:1550000
KS ci ratio: 1.380402e-01	ci left: 4.841013e-04	ci right 5.564959e-04	k: 805	n:1550000
NASP   1550000 perm   1316 sec   (1178 perm/sec)   p_kst 5.193548e-04   p_cons 9.189781e-01   p_joint 1.826452e-03

Joint ci ratio: 7.333543e-02	ci left: 1.761147e-03	ci right 1.895842e-03	k: 2851	n:1560000
Cons ci ratio: 9.318162e-04	ci left: 9.185637e-01	ci right 9.194206e-01	k: 1433629	n:1560000
KS ci ratio: 1.373600e-01	ci left: 4.859496e-04	ci right 5.582333e-04	k: 813	n:1560000
NASP   1560000 perm   1330 sec   (1173 perm/sec)   p_kst 5.211538e-04   p_cons 9.189929e-01   p_joint 1.827564e-03

Joint ci ratio: 7.306685e-02	ci left: 1.763060e-03	ci right 1.897387e-03	k: 2872	n:1570000
Cons ci ratio: 9.288674e-04	ci left: 9.185613e-01	ci right 9.194155e-01	k: 1442813	n:1570000
KS ci ratio: 1.369401e-01	ci left: 4.859299e-04	ci right 5.579716e-04	k: 818	n:1570000
NASP   1570000 perm   1345 sec   (1168 perm/sec)   p_kst 5.210191e-04   p_cons 9.189892e-01   p_joint 1.829299e-03

Joint ci ratio: 7.281381e-02	ci left: 1.764329e-03	ci right 1.898267e-03	k: 2892	n:1580000
Cons ci ratio: 9.258244e-04	ci left: 9.185786e-01	ci right 9.194300e-01	k: 1452028	n:1580000
KS ci ratio: 1.366070e-01	ci left: 4.852994e-04	ci right 5.570584e-04	k: 822	n:1580000
NASP   1580000 perm   1359 sec   (1162 perm/sec)   p_kst 5.202532e-04   p_cons 9.190051e-01   p_joint 1.830380e-03

Joint ci ratio: 7.260084e-02	ci left: 1.763730e-03	ci right 1.897214e-03	k: 2909	n:1590000
Cons ci ratio: 9.228346e-04	ci left: 9.185919e-01	ci right 9.194406e-01	k: 1461237	n:1590000
KS ci ratio: 1.362763e-01	ci left: 4.846770e-04	ci right 5.561564e-04	k: 826	n:1590000
NASP   1590000 perm   1374 sec   (1158 perm/sec)   p_kst 5.194969e-04   p_cons 9.190170e-01   p_joint 1.829560e-03

Joint ci ratio: 7.237735e-02	ci left: 1.763753e-03	ci right 1.896811e-03	k: 2927	n:1600000
Cons ci ratio: 9.200241e-04	ci left: 9.185806e-01	ci right 9.194267e-01	k: 1470407	n:1600000
KS ci ratio: 1.357845e-01	ci left: 4.852702e-04	ci right 5.565580e-04	k: 832	n:1600000
NASP   1600000 perm   1388 sec   (1153 perm/sec)   p_kst 5.200000e-04   p_cons 9.190044e-01   p_joint 1.829375e-03

Joint ci ratio: 7.220503e-02	ci left: 1.761336e-03	ci right 1.893882e-03	k: 2941	n:1610000
Cons ci ratio: 9.172697e-04	ci left: 9.185644e-01	ci right 9.194080e-01	k: 1479569	n:1610000
KS ci ratio: 1.355408e-01	ci left: 4.840562e-04	ci right 5.550277e-04	k: 835	n:1610000
NASP   1610000 perm   1403 sec   (1148 perm/sec)   p_kst 5.186335e-04   p_cons 9.189870e-01   p_joint 1.826708e-03

Joint ci ratio: 7.196080e-02	ci left: 1.762587e-03	ci right 1.894760e-03	k: 2961	n:1620000
Cons ci ratio: 9.143996e-04	ci left: 9.185714e-01	ci right 9.194123e-01	k: 1488768	n:1620000
KS ci ratio: 1.350570e-01	ci left: 4.846465e-04	ci right 5.554306e-04	k: 841	n:1620000
NASP   1620000 perm   1418 sec   (1143 perm/sec)   p_kst 5.191358e-04   p_cons 9.189926e-01   p_joint 1.827778e-03

Joint ci ratio: 7.174315e-02	ci left: 1.762618e-03	ci right 1.894377e-03	k: 2979	n:1630000
Cons ci ratio: 9.116239e-04	ci left: 9.185672e-01	ci right 9.194056e-01	k: 1497949	n:1630000
KS ci ratio: 1.344198e-01	ci left: 4.864158e-04	ci right 5.570963e-04	k: 849	n:1630000
NASP   1630000 perm   1432 sec   (1138 perm/sec)   p_kst 5.208589e-04   p_cons 9.189871e-01   p_joint 1.827607e-03

Joint ci ratio: 7.163526e-02	ci left: 1.757260e-03	ci right 1.888412e-03	k: 2988	n:1640000
Cons ci ratio: 9.088882e-04	ci left: 9.185606e-01	ci right 9.193964e-01	k: 1507126	n:1640000
KS ci ratio: 1.342621e-01	ci left: 4.846283e-04	ci right 5.549599e-04	k: 851	n:1640000
NASP   1640000 perm   1447 sec   (1133 perm/sec)   p_kst 5.189024e-04   p_cons 9.189793e-01   p_joint 1.821951e-03

Joint ci ratio: 7.145626e-02	ci left: 1.755538e-03	ci right 1.886221e-03	k: 3003	n:1650000
Cons ci ratio: 9.060442e-04	ci left: 9.185760e-01	ci right 9.194092e-01	k: 1516339	n:1650000
KS ci ratio: 1.336360e-01	ci left: 4.863772e-04	ci right 5.566073e-04	k: 859	n:1650000
NASP   1650000 perm   1462 sec   (1129 perm/sec)   p_kst 5.206061e-04   p_cons 9.189933e-01   p_joint 1.820000e-03

Joint ci ratio: 8.746975e-02	ci left: 1.155566e-03	ci right 1.261850e-03	k: 2005	n:1660000
Cons ci ratio: 9.034387e-04	ci left: 9.185561e-01	ci right 9.193870e-01	k: 1525494	n:1660000
KS ci ratio: 1.330954e-01	ci left: 4.875234e-04	ci right 5.576117e-04	k: 866	n:1660000
NASP   1660000 perm   1477 sec   (1124 perm/sec)   p_kst 5.216867e-04   p_cons 9.189723e-01   p_joint 1.207831e-03

Joint ci ratio: 7.104362e-02	ci left: 1.755098e-03	ci right 1.884963e-03	k: 3038	n:1670000
Cons ci ratio: 9.009134e-04	ci left: 9.185270e-01	ci right 9.193554e-01	k: 1534633	n:1670000
KS ci ratio: 1.325612e-01	ci left: 4.886565e-04	ci right 5.586035e-04	k: 873	n:1670000
NASP   1670000 perm   1492 sec   (1119 perm/sec)   p_kst 5.227545e-04   p_cons 9.189419e-01   p_joint 1.819162e-03

Joint ci ratio: 7.083416e-02	ci left: 1.755175e-03	ci right 1.884647e-03	k: 3056	n:1680000
Cons ci ratio: 8.982224e-04	ci left: 9.185291e-01	ci right 9.193551e-01	k: 1543824	n:1680000
KS ci ratio: 1.321837e-01	ci left: 4.886255e-04	ci right 5.583532e-04	k: 878	n:1680000
NASP   1680000 perm   1508 sec   (1114 perm/sec)   p_kst 5.226190e-04   p_cons 9.189429e-01   p_joint 1.819048e-03

Joint ci ratio: 7.058056e-02	ci left: 1.757577e-03	ci right 1.886743e-03	k: 3078	n:1690000
Cons ci ratio: 8.956621e-04	ci left: 9.185135e-01	ci right 9.193371e-01	k: 1552985	n:1690000
KS ci ratio: 1.318840e-01	ci left: 4.880229e-04	ci right 5.574944e-04	k: 882	n:1690000
NASP   1690000 perm   1524 sec   (1109 perm/sec)   p_kst 5.218935e-04   p_cons 9.189260e-01   p_joint 1.821302e-03

Joint ci ratio: 7.038654e-02	ci left: 1.757062e-03	ci right 1.885821e-03	k: 3095	n:1700000
Cons ci ratio: 8.930495e-04	ci left: 9.185104e-01	ci right 9.193317e-01	k: 1562167	n:1700000
KS ci ratio: 1.315863e-01	ci left: 4.874275e-04	ci right 5.566454e-04	k: 886	n:1700000
NASP   1700000 perm   1539 sec   (1104 perm/sec)   p_kst 5.211765e-04   p_cons 9.189218e-01   p_joint 1.820588e-03

Joint ci ratio: 7.019412e-02	ci left: 1.756554e-03	ci right 1.884909e-03	k: 3112	n:1710000
Cons ci ratio: 8.903967e-04	ci left: 9.185180e-01	ci right 9.193367e-01	k: 1571367	n:1710000
KS ci ratio: 1.312170e-01	ci left: 4.874049e-04	ci right 5.564102e-04	k: 891	n:1710000
NASP   1710000 perm   1556 sec   (1099 perm/sec)   p_kst 5.210526e-04   p_cons 9.189281e-01   p_joint 1.819883e-03

Joint ci ratio: 8.029653e-02	ci left: 1.328149e-03	ci right 1.439820e-03	k: 2379	n:1720000
Cons ci ratio: 8.878402e-04	ci left: 9.185132e-01	ci right 9.193296e-01	k: 1580546	n:1720000
KS ci ratio: 1.308508e-01	ci left: 4.873829e-04	ci right 5.561775e-04	k: 896	n:1720000
NASP   1720000 perm   1571 sec   (1095 perm/sec)   p_kst 5.209302e-04   p_cons 9.189221e-01   p_joint 1.383140e-03

Joint ci ratio: 8.011168e-02	ci left: 1.326702e-03	ci right 1.437983e-03	k: 2390	n:1730000
Cons ci ratio: 8.851957e-04	ci left: 9.185270e-01	ci right 9.193410e-01	k: 1589757	n:1730000
KS ci ratio: 1.307053e-01	ci left: 4.856838e-04	ci right 5.541565e-04	k: 898	n:1730000
NASP   1730000 perm   1587 sec   (1090 perm/sec)   p_kst 5.190751e-04   p_cons 9.189347e-01   p_joint 1.381503e-03

Joint ci ratio: 7.999482e-02	ci left: 1.323020e-03	ci right 1.433823e-03	k: 2397	n:1740000
Cons ci ratio: 8.827176e-04	ci left: 9.185164e-01	ci right 9.193281e-01	k: 1598926	n:1740000
KS ci ratio: 1.302713e-01	ci left: 4.862283e-04	ci right 5.545325e-04	k: 904	n:1740000
NASP   1740000 perm   1603 sec   (1086 perm/sec)   p_kst 5.195402e-04   p_cons 9.189230e-01   p_joint 1.377586e-03

Joint ci ratio: 7.974577e-02	ci left: 1.323860e-03	ci right 1.434372e-03	k: 2412	n:1750000
Cons ci ratio: 8.802197e-04	ci left: 9.185129e-01	ci right 9.193223e-01	k: 1608107	n:1750000
KS ci ratio: 1.296282e-01	ci left: 4.884255e-04	ci right 5.566736e-04	k: 913	n:1750000
NASP   1750000 perm   1619 sec   (1081 perm/sec)   p_kst 5.217143e-04   p_cons 9.189183e-01   p_joint 1.378286e-03

Joint ci ratio: 7.951543e-02	ci left: 1.324134e-03	ci right 1.434335e-03	k: 2426	n:1760000
Cons ci ratio: 8.777496e-04	ci left: 9.185082e-01	ci right 9.193154e-01	k: 1617286	n:1760000
KS ci ratio: 1.294160e-01	ci left: 4.872997e-04	ci right 5.552705e-04	k: 916	n:1760000
NASP   1760000 perm   1635 sec   (1077 perm/sec)   p_kst 5.204545e-04   p_cons 9.189125e-01   p_joint 1.378409e-03

Joint ci ratio: 9.028792e-02	ci left: 1.015800e-03	ci right 1.112398e-03	k: 1882	n:1770000
Cons ci ratio: 8.751375e-04	ci left: 9.185314e-01	ci right 9.193361e-01	k: 1626514	n:1770000
KS ci ratio: 1.289248e-01	ci left: 4.883736e-04	ci right 5.562159e-04	k: 923	n:1770000
NASP   1770000 perm   1651 sec   (1072 perm/sec)   p_kst 5.214689e-04   p_cons 9.189345e-01   p_joint 1.063277e-03

Joint ci ratio: 9.016843e-02	ci left: 1.012839e-03	ci right 1.109021e-03	k: 1887	n:1780000
Cons ci ratio: 8.725749e-04	ci left: 9.185498e-01	ci right 9.193522e-01	k: 1635734	n:1780000
KS ci ratio: 1.286467e-01	ci left: 4.878047e-04	ci right 5.554106e-04	k: 927	n:1780000
NASP   1780000 perm   1666 sec   (1068 perm/sec)   p_kst 5.207865e-04   p_cons 9.189517e-01   p_joint 1.060112e-03

Joint ci ratio: 6.876250e-02	ci left: 1.749962e-03	ci right 1.875123e-03	k: 3243	n:1790000
Cons ci ratio: 8.702207e-04	ci left: 9.185361e-01	ci right 9.193363e-01	k: 1644897	n:1790000
KS ci ratio: 1.280273e-01	ci left: 4.899461e-04	ci right 5.574970e-04	k: 936	n:1790000
NASP   1790000 perm   1683 sec   (1064 perm/sec)   p_kst 5.229050e-04   p_cons 9.189369e-01   p_joint 1.811732e-03

Joint ci ratio: 8.577821e-02	ci left: 1.109169e-03	ci right 1.209114e-03	k: 2085	n:1800000
Cons ci ratio: 8.677591e-04	ci left: 9.185442e-01	ci right 9.193422e-01	k: 1654099	n:1800000
KS ci ratio: 1.277549e-01	ci left: 4.893753e-04	ci right 5.566931e-04	k: 940	n:1800000
NASP   1800000 perm   1699 sec   (1060 perm/sec)   p_kst 5.222222e-04   p_cons 9.189439e-01   p_joint 1.158333e-03

Joint ci ratio: 8.555295e-02	ci left: 1.108988e-03	ci right 1.208641e-03	k: 2096	n:1810000
Cons ci ratio: 8.654949e-04	ci left: 9.185218e-01	ci right 9.193177e-01	k: 1663246	n:1810000
KS ci ratio: 1.272152e-01	ci left: 4.909505e-04	ci right 5.581781e-04	k: 948	n:1810000
NASP   1810000 perm   1715 sec   (1056 perm/sec)   p_kst 5.237569e-04   p_cons 9.189204e-01   p_joint 1.158011e-03

Joint ci ratio: 8.526873e-02	ci left: 1.110423e-03	ci right 1.209857e-03	k: 2110	n:1820000
Cons ci ratio: 8.630509e-04	ci left: 9.185338e-01	ci right 9.193275e-01	k: 1672455	n:1820000
KS ci ratio: 1.267485e-01	ci left: 4.919770e-04	ci right 5.590795e-04	k: 955	n:1820000
NASP   1820000 perm   1731 sec   (1051 perm/sec)   p_kst 5.247253e-04   p_cons 9.189313e-01   p_joint 1.159341e-03

Joint ci ratio: 8.496732e-02	ci left: 1.112377e-03	ci right 1.211617e-03	k: 2125	n:1830000
Cons ci ratio: 8.605990e-04	ci left: 9.185506e-01	ci right 9.193420e-01	k: 1681673	n:1830000
KS ci ratio: 1.264184e-01	ci left: 4.919343e-04	ci right 5.588431e-04	k: 960	n:1830000
NASP   1830000 perm   1748 sec   (1047 perm/sec)   p_kst 5.245902e-04   p_cons 9.189470e-01   p_joint 1.161202e-03

Joint ci ratio: 8.472852e-02	ci left: 1.112715e-03	ci right 1.211692e-03	k: 2137	n:1840000
Cons ci ratio: 8.581929e-04	ci left: 9.185629e-01	ci right 9.193521e-01	k: 1690883	n:1840000
KS ci ratio: 1.258953e-01	ci left: 4.934714e-04	ci right 5.602909e-04	k: 968	n:1840000
NASP   1840000 perm   1764 sec   (1043 perm/sec)   p_kst 5.260870e-04   p_cons 9.189582e-01   p_joint 1.161413e-03

Joint ci ratio: 8.451141e-02	ci left: 1.112520e-03	ci right 1.211214e-03	k: 2148	n:1850000
Cons ci ratio: 8.559343e-04	ci left: 9.185528e-01	ci right 9.193399e-01	k: 1700052	n:1850000
KS ci ratio: 1.254430e-01	ci left: 4.944689e-04	ci right 5.611649e-04	k: 975	n:1850000
NASP   1850000 perm   1781 sec   (1039 perm/sec)   p_kst 5.270270e-04   p_cons 9.189470e-01   p_joint 1.161081e-03

Joint ci ratio: 8.435463e-02	ci left: 1.110749e-03	ci right 1.209094e-03	k: 2156	n:1860000
Cons ci ratio: 8.536687e-04	ci left: 9.185472e-01	ci right 9.193322e-01	k: 1709229	n:1860000
KS ci ratio: 1.252507e-01	ci left: 4.933727e-04	ci right 5.598114e-04	k: 978	n:1860000
NASP   1860000 perm   1797 sec   (1035 perm/sec)   p_kst 5.258065e-04   p_cons 9.189403e-01   p_joint 1.159140e-03

Joint ci ratio: 8.417925e-02	ci left: 1.109521e-03	ci right 1.207543e-03	k: 2165	n:1870000
Cons ci ratio: 8.513507e-04	ci left: 9.185539e-01	ci right 9.193368e-01	k: 1718429	n:1870000
KS ci ratio: 1.249957e-01	ci left: 4.928065e-04	ci right 5.590237e-04	k: 982	n:1870000
NASP   1870000 perm   1814 sec   (1031 perm/sec)   p_kst 5.251337e-04   p_cons 9.189460e-01   p_joint 1.157754e-03

Joint ci ratio: 8.400496e-02	ci left: 1.108306e-03	ci right 1.206007e-03	k: 2174	n:1880000
Cons ci ratio: 8.491758e-04	ci left: 9.185387e-01	ci right 9.193196e-01	k: 1727588	n:1880000
KS ci ratio: 1.246790e-01	ci left: 4.927617e-04	ci right 5.587927e-04	k: 987	n:1880000
NASP   1880000 perm   1831 sec   (1027 perm/sec)   p_kst 5.250000e-04   p_cons 9.189298e-01   p_joint 1.156383e-03

Joint ci ratio: 8.381255e-02	ci left: 1.107622e-03	ci right 1.205028e-03	k: 2184	n:1890000
Cons ci ratio: 8.469422e-04	ci left: 9.185369e-01	ci right 9.193157e-01	k: 1736772	n:1890000
KS ci ratio: 1.243021e-01	ci left: 4.932302e-04	ci right 5.591096e-04	k: 993	n:1890000
NASP   1890000 perm   1848 sec   (1023 perm/sec)   p_kst 5.253968e-04   p_cons 9.189270e-01   p_joint 1.155556e-03

Joint ci ratio: 8.360238e-02	ci left: 1.107460e-03	ci right 1.204597e-03	k: 2195	n:1900000
Cons ci ratio: 8.447501e-04	ci left: 9.185310e-01	ci right 9.193077e-01	k: 1745948	n:1900000
KS ci ratio: 1.239907e-01	ci left: 4.931841e-04	ci right 5.588802e-04	k: 998	n:1900000
NASP   1900000 perm   1864 sec   (1019 perm/sec)   p_kst 5.252632e-04   p_cons 9.189200e-01   p_joint 1.155263e-03

Joint ci ratio: 8.335599e-02	ci left: 1.108326e-03	ci right 1.205238e-03	k: 2208	n:1910000
Cons ci ratio: 8.423913e-04	ci left: 9.185576e-01	ci right 9.193322e-01	k: 1755186	n:1910000
KS ci ratio: 1.237432e-01	ci left: 4.926313e-04	ci right 5.581132e-04	k: 1002	n:1910000
NASP   1910000 perm   1882 sec   (1015 perm/sec)   p_kst 5.246073e-04   p_cons 9.189455e-01   p_joint 1.156021e-03

Joint ci ratio: 8.318676e-02	ci left: 1.107144e-03	ci right 1.203746e-03	k: 2217	n:1920000
Cons ci ratio: 8.402695e-04	ci left: 9.185453e-01	ci right 9.193180e-01	k: 1764350	n:1920000
KS ci ratio: 1.234359e-01	ci left: 4.925892e-04	ci right 5.578910e-04	k: 1007	n:1920000
NASP   1920000 perm   1899 sec   (1011 perm/sec)   p_kst 5.244792e-04   p_cons 9.189323e-01   p_joint 1.154687e-03

Joint ci ratio: 8.298125e-02	ci left: 1.106988e-03	ci right 1.203327e-03	k: 2228	n:1930000
Cons ci ratio: 8.381344e-04	ci left: 9.185384e-01	ci right 9.193091e-01	k: 1773524	n:1930000
KS ci ratio: 1.231918e-01	ci left: 4.920455e-04	ci right 5.571368e-04	k: 1011	n:1930000
NASP   1930000 perm   1916 sec   (1008 perm/sec)   p_kst 5.238342e-04   p_cons 9.189244e-01   p_joint 1.154404e-03

Joint ci ratio: 8.277727e-02	ci left: 1.106835e-03	ci right 1.202912e-03	k: 2239	n:1940000
Cons ci ratio: 8.359259e-04	ci left: 9.185475e-01	ci right 9.193162e-01	k: 1782729	n:1940000
KS ci ratio: 1.228886e-01	ci left: 4.920072e-04	ci right 5.569216e-04	k: 1016	n:1940000
NASP   1940000 perm   1933 sec   (1004 perm/sec)   p_kst 5.237113e-04   p_cons 9.189325e-01   p_joint 1.154124e-03

Joint ci ratio: 8.259314e-02	ci left: 1.106181e-03	ci right 1.201977e-03	k: 2249	n:1950000
Cons ci ratio: 8.337290e-04	ci left: 9.185576e-01	ci right 9.193242e-01	k: 1791936	n:1950000
KS ci ratio: 1.223483e-01	ci left: 4.939580e-04	ci right 5.588224e-04	k: 1025	n:1950000
NASP   1950000 perm   1950 sec   (1000 perm/sec)   p_kst 5.256410e-04   p_cons 9.189415e-01   p_joint 1.153333e-03

Joint ci ratio: 8.248336e-02	ci left: 1.103535e-03	ci right 1.198969e-03	k: 2255	n:1960000
Cons ci ratio: 8.316433e-04	ci left: 9.185507e-01	ci right 9.193154e-01	k: 1801110	n:1960000
KS ci ratio: 1.221699e-01	ci left: 4.929215e-04	ci right 5.575487e-04	k: 1028	n:1960000
NASP   1960000 perm   1970 sec   (995 perm/sec)   p_kst 5.244898e-04   p_cons 9.189337e-01   p_joint 1.150510e-03

Joint ci ratio: 8.592696e-02	ci left: 1.009975e-03	ci right 1.101147e-03	k: 2078	n:1970000
Cons ci ratio: 8.295054e-04	ci left: 9.185561e-01	ci right 9.193188e-01	k: 1810308	n:1970000
KS ci ratio: 1.218742e-01	ci left: 4.928800e-04	ci right 5.573340e-04	k: 1033	n:1970000
NASP   1970000 perm   1988 sec   (991 perm/sec)   p_kst 5.243655e-04   p_cons 9.189381e-01   p_joint 1.054822e-03

Joint ci ratio: 8.584456e-02	ci left: 1.006850e-03	ci right 1.097649e-03	k: 2082	n:1980000
Cons ci ratio: 8.273221e-04	ci left: 9.185725e-01	ci right 9.193333e-01	k: 1819528	n:1980000
KS ci ratio: 1.216978e-01	ci left: 4.918597e-04	ci right 5.560805e-04	k: 1036	n:1980000
NASP   1980000 perm   2005 sec   (988 perm/sec)   p_kst 5.232323e-04   p_cons 9.189535e-01   p_joint 1.051515e-03

Joint ci ratio: 8.557787e-02	ci left: 1.008184e-03	ci right 1.098806e-03	k: 2095	n:1990000
Cons ci ratio: 8.252284e-04	ci left: 9.185758e-01	ci right 9.193346e-01	k: 1828722	n:1990000
KS ci ratio: 1.215222e-01	ci left: 4.908497e-04	ci right 5.548395e-04	k: 1039	n:1990000
NASP   1990000 perm   2022 sec   (984 perm/sec)   p_kst 5.221106e-04   p_cons 9.189558e-01   p_joint 1.052764e-03

Joint ci ratio: 8.537447e-02	ci left: 1.008036e-03	ci right 1.098419e-03	k: 2105	n:2000000
Cons ci ratio: 8.231173e-04	ci left: 9.185849e-01	ci right 9.193418e-01	k: 1837928	n:2000000
KS ci ratio: 1.212312e-01	ci left: 4.908195e-04	ci right 5.546412e-04	k: 1044	n:2000000
NASP   2000000 perm   2040 sec   (980 perm/sec)   p_kst 5.220000e-04   p_cons 9.189640e-01   p_joint 1.052500e-03

Joint ci ratio: 8.523301e-02	ci left: 1.006429e-03	ci right 1.096511e-03	k: 2112	n:2010000
Cons ci ratio: 8.210826e-04	ci left: 9.185831e-01	ci right 9.193381e-01	k: 1847112	n:2010000
KS ci ratio: 1.211154e-01	ci left: 4.893425e-04	ci right 5.529070e-04	k: 1046	n:2010000
NASP   2010000 perm   2058 sec   (977 perm/sec)   p_kst 5.203980e-04   p_cons 9.189612e-01   p_joint 1.050746e-03

Joint ci ratio: 8.509225e-02	ci left: 1.004838e-03	ci right 1.094622e-03	k: 2119	n:2020000
Cons ci ratio: 8.189459e-04	ci left: 9.186026e-01	ci right 9.193556e-01	k: 1856339	n:2020000
KS ci ratio: 1.210000e-01	ci left: 4.878801e-04	ci right 5.511899e-04	k: 1048	n:2020000
NASP   2020000 perm   2075 sec   (973 perm/sec)   p_kst 5.188119e-04   p_cons 9.189797e-01   p_joint 1.049010e-03

Joint ci ratio: 8.130295e-02	ci left: 1.097328e-03	ci right 1.190804e-03	k: 2321	n:2030000
Cons ci ratio: 8.169041e-04	ci left: 9.186075e-01	ci right 9.193587e-01	k: 1865537	n:2030000
KS ci ratio: 1.205983e-01	ci left: 4.888209e-04	ci right 5.520271e-04	k: 1055	n:2030000
NASP   2030000 perm   2093 sec   (970 perm/sec)   p_kst 5.197044e-04   p_cons 9.189837e-01   p_joint 1.143350e-03

Joint ci ratio: 8.461459e-02	ci left: 1.006502e-03	ci right 1.095905e-03	k: 2143	n:2040000
Cons ci ratio: 8.148481e-04	ci left: 9.186179e-01	ci right 9.193672e-01	k: 1874746	n:2040000
KS ci ratio: 1.203138e-01	ci left: 4.888018e-04	ci right 5.518459e-04	k: 1060	n:2040000
NASP   2040000 perm   2111 sec   (966 perm/sec)   p_kst 5.196078e-04   p_cons 9.189931e-01   p_joint 1.050490e-03

Joint ci ratio: 8.443758e-02	ci left: 1.005890e-03	ci right 1.095042e-03	k: 2152	n:2050000
Cons ci ratio: 8.126796e-04	ci left: 9.186516e-01	ci right 9.193989e-01	k: 1884003	n:2050000
KS ci ratio: 1.199750e-01	ci left: 4.892563e-04	ci right 5.521687e-04	k: 1066	n:2050000
NASP   2050000 perm   2129 sec   (963 perm/sec)   p_kst 5.200000e-04   p_cons 9.190259e-01   p_joint 1.049756e-03

Joint ci ratio: 8.424218e-02	ci left: 1.005759e-03	ci right 1.094683e-03	k: 2162	n:2060000
Cons ci ratio: 8.106154e-04	ci left: 9.186689e-01	ci right 9.194144e-01	k: 1893227	n:2060000
KS ci ratio: 1.196391e-01	ci left: 4.897066e-04	ci right 5.524881e-04	k: 1072	n:2060000
NASP   2060000 perm   2148 sec   (959 perm/sec)   p_kst 5.203883e-04   p_cons 9.190422e-01   p_joint 1.049515e-03

Joint ci ratio: 8.404812e-02	ci left: 1.005629e-03	ci right 1.094327e-03	k: 2172	n:2070000
Cons ci ratio: 8.085249e-04	ci left: 9.186938e-01	ci right 9.194374e-01	k: 1902467	n:2070000
KS ci ratio: 1.192507e-01	ci left: 4.906215e-04	ci right 5.533017e-04	k: 1079	n:2070000
NASP   2070000 perm   2167 sec   (955 perm/sec)   p_kst 5.212560e-04   p_cons 9.190662e-01   p_joint 1.049275e-03

Joint ci ratio: 8.370202e-02	ci left: 1.009267e-03	ci right 1.097901e-03	k: 2190	n:2080000
Cons ci ratio: 8.066328e-04	ci left: 9.186848e-01	ci right 9.194266e-01	k: 1911637	n:2080000
KS ci ratio: 1.187022e-01	ci left: 4.929274e-04	ci right 5.555922e-04	k: 1089	n:2080000
NASP   2080000 perm   2186 sec   (952 perm/sec)   p_kst 5.235577e-04   p_cons 9.190563e-01   p_joint 1.052885e-03

Joint ci ratio: 8.337904e-02	ci left: 1.012402e-03	ci right 1.100952e-03	k: 2207	n:2090000
Cons ci ratio: 8.046116e-04	ci left: 9.187022e-01	ci right 9.194421e-01	k: 1920862	n:2090000
KS ci ratio: 1.180540e-01	ci left: 4.961405e-04	ci right 5.588454e-04	k: 1101	n:2090000
NASP   2090000 perm   2204 sec   (948 perm/sec)   p_kst 5.267943e-04   p_cons 9.190727e-01   p_joint 1.055981e-03

Joint ci ratio: 8.322845e-02	ci left: 1.011311e-03	ci right 1.099598e-03	k: 2215	n:2100000
Cons ci ratio: 8.027211e-04	ci left: 9.186979e-01	ci right 9.194361e-01	k: 1930042	n:2100000
KS ci ratio: 1.177871e-01	ci left: 4.960887e-04	ci right 5.586354e-04	k: 1106	n:2100000
NASP   2100000 perm   2223 sec   (945 perm/sec)   p_kst 5.266667e-04   p_cons 9.190676e-01   p_joint 1.054762e-03

Joint ci ratio: 8.300399e-02	ci left: 1.012087e-03	ci right 1.100192e-03	k: 2227	n:2110000
Cons ci ratio: 8.007317e-04	ci left: 9.187146e-01	ci right 9.194510e-01	k: 1939266	n:2110000
KS ci ratio: 1.174164e-01	ci left: 4.969575e-04	ci right 5.594029e-04	k: 1113	n:2110000
NASP   2110000 perm   2242 sec   (941 perm/sec)   p_kst 5.274882e-04   p_cons 9.190834e-01   p_joint 1.055450e-03

Joint ci ratio: 7.932866e-02	ci left: 1.104824e-03	ci right 1.196547e-03	k: 2438	n:2120000
Cons ci ratio: 7.988076e-04	ci left: 9.187217e-01	ci right 9.194564e-01	k: 1948470	n:2120000
KS ci ratio: 1.171014e-01	ci left: 4.973606e-04	ci right 5.596774e-04	k: 1119	n:2120000
NASP   2120000 perm   2261 sec   (938 perm/sec)   p_kst 5.278302e-04   p_cons 9.190896e-01   p_joint 1.150000e-03

Joint ci ratio: 7.913421e-02	ci left: 1.105160e-03	ci right 1.196675e-03	k: 2450	n:2130000
Cons ci ratio: 7.969752e-04	ci left: 9.187142e-01	ci right 9.194471e-01	k: 1957643	n:2130000
KS ci ratio: 1.168929e-01	ci left: 4.968485e-04	ci right 5.589826e-04	k: 1123	n:2130000
NASP   2130000 perm   2280 sec   (934 perm/sec)   p_kst 5.272300e-04   p_cons 9.190812e-01   p_joint 1.150235e-03

Joint ci ratio: 7.898937e-02	ci left: 1.104118e-03	ci right 1.195372e-03	k: 2459	n:2140000
Cons ci ratio: 7.951005e-04	ci left: 9.187170e-01	ci right 9.194482e-01	k: 1966838	n:2140000
KS ci ratio: 1.167373e-01	ci left: 4.958877e-04	ci right 5.578134e-04	k: 1126	n:2140000
NASP   2140000 perm   2300 sec   (930 perm/sec)   p_kst 5.261682e-04   p_cons 9.190832e-01   p_joint 1.149065e-03

Joint ci ratio: 7.874958e-02	ci left: 1.105821e-03	ci right 1.196926e-03	k: 2474	n:2150000
Cons ci ratio: 7.931496e-04	ci left: 9.187366e-01	ci right 9.194660e-01	k: 1976069	n:2150000
KS ci ratio: 1.162227e-01	ci left: 4.980969e-04	ci right 5.600055e-04	k: 1136	n:2150000
NASP   2150000 perm   2320 sec   (927 perm/sec)   p_kst 5.283721e-04   p_cons 9.191019e-01   p_joint 1.150698e-03

Joint ci ratio: 7.862268e-02	ci left: 1.104333e-03	ci right 1.195161e-03	k: 2482	n:2160000
Cons ci ratio: 7.912573e-04	ci left: 9.187476e-01	ci right 9.194753e-01	k: 1985282	n:2160000
KS ci ratio: 1.160188e-01	ci left: 4.975890e-04	ci right 5.593185e-04	k: 1140	n:2160000
NASP   2160000 perm   2340 sec   (923 perm/sec)   p_kst 5.277778e-04   p_cons 9.191120e-01   p_joint 1.149074e-03

Joint ci ratio: 7.848062e-02	ci left: 1.103310e-03	ci right 1.193883e-03	k: 2491	n:2170000
Cons ci ratio: 7.892953e-04	ci left: 9.187743e-01	ci right 9.195002e-01	k: 1994529	n:2170000
KS ci ratio: 1.158160e-01	ci left: 4.970858e-04	ci right 5.586377e-04	k: 1144	n:2170000
NASP   2170000 perm   2359 sec   (920 perm/sec)   p_kst 5.271889e-04   p_cons 9.191378e-01   p_joint 1.147926e-03

Joint ci ratio: 7.826105e-02	ci left: 1.104545e-03	ci right 1.194954e-03	k: 2505	n:2180000
Cons ci ratio: 7.874547e-04	ci left: 9.187804e-01	ci right 9.195047e-01	k: 2003732	n:2180000
KS ci ratio: 1.155640e-01	ci left: 4.970328e-04	ci right 5.584351e-04	k: 1149	n:2180000
NASP   2180000 perm   2378 sec   (917 perm/sec)   p_kst 5.270642e-04   p_cons 9.191431e-01   p_joint 1.149083e-03

Joint ci ratio: 7.813649e-02	ci left: 1.103083e-03	ci right 1.193222e-03	k: 2513	n:2190000
Cons ci ratio: 7.856968e-04	ci left: 9.187733e-01	ci right 9.194959e-01	k: 2012906	n:2190000
KS ci ratio: 1.153136e-01	ci left: 4.969804e-04	ci right 5.582342e-04	k: 1154	n:2190000
NASP   2190000 perm   2399 sec   (913 perm/sec)   p_kst 5.269406e-04   p_cons 9.191352e-01   p_joint 1.147489e-03

Joint ci ratio: 7.785815e-02	ci left: 1.106091e-03	ci right 1.196140e-03	k: 2531	n:2200000
Cons ci ratio: 7.840154e-04	ci left: 9.187539e-01	ci right 9.194750e-01	k: 2022053	n:2200000
KS ci ratio: 1.148175e-01	ci left: 4.991361e-04	ci right 5.603729e-04	k: 1164	n:2200000
NASP   2200000 perm   2418 sec   (910 perm/sec)   p_kst 5.290909e-04   p_cons 9.191150e-01   p_joint 1.150455e-03

Joint ci ratio: 7.764374e-02	ci left: 1.107298e-03	ci right 1.197185e-03	k: 2545	n:2210000
Cons ci ratio: 7.822162e-04	ci left: 9.187592e-01	ci right 9.194786e-01	k: 2031254	n:2210000
KS ci ratio: 1.147683e-01	ci left: 4.973170e-04	ci right 5.583028e-04	k: 1165	n:2210000
NASP   2210000 perm   2442 sec   (905 perm/sec)   p_kst 5.271493e-04   p_cons 9.191195e-01   p_joint 1.151584e-03

Joint ci ratio: 7.747656e-02	ci left: 1.107169e-03	ci right 1.196843e-03	k: 2556	n:2220000
Cons ci ratio: 7.804363e-04	ci left: 9.187631e-01	ci right 9.194809e-01	k: 2040452	n:2220000
KS ci ratio: 1.145720e-01	ci left: 4.968270e-04	ci right 5.576414e-04	k: 1169	n:2220000
NASP   2220000 perm   2463 sec   (901 perm/sec)   p_kst 5.265766e-04   p_cons 9.191225e-01   p_joint 1.151351e-03

Joint ci ratio: 7.731046e-02	ci left: 1.107041e-03	ci right 1.196505e-03	k: 2567	n:2230000
Cons ci ratio: 7.786803e-04	ci left: 9.187647e-01	ci right 9.194808e-01	k: 2049645	n:2230000
KS ci ratio: 1.142308e-01	ci left: 4.976482e-04	ci right 5.583696e-04	k: 1176	n:2230000
NASP   2230000 perm   2482 sec   (898 perm/sec)   p_kst 5.273543e-04   p_cons 9.191233e-01   p_joint 1.151121e-03

Joint ci ratio: 7.710054e-02	ci left: 1.108228e-03	ci right 1.197534e-03	k: 2581	n:2240000
Cons ci ratio: 7.769291e-04	ci left: 9.187676e-01	ci right 9.194822e-01	k: 2058841	n:2240000
KS ci ratio: 1.141339e-01	ci left: 4.962939e-04	ci right 5.567952e-04	k: 1178	n:2240000
NASP   2240000 perm   2502 sec   (895 perm/sec)   p_kst 5.258929e-04   p_cons 9.191254e-01   p_joint 1.152232e-03

Joint ci ratio: 7.692199e-02	ci left: 1.108534e-03	ci right 1.197647e-03	k: 2593	n:2250000
Cons ci ratio: 7.752059e-04	ci left: 9.187674e-01	ci right 9.194804e-01	k: 2068030	n:2250000
KS ci ratio: 1.138927e-01	ci left: 4.962470e-04	ci right 5.566061e-04	k: 1183	n:2250000
NASP   2250000 perm   2522 sec   (892 perm/sec)   p_kst 5.257778e-04   p_cons 9.191244e-01   p_joint 1.152444e-03

Joint ci ratio: 7.677417e-02	ci left: 1.107968e-03	ci right 1.196858e-03	k: 2603	n:2260000
Cons ci ratio: 7.734665e-04	ci left: 9.187726e-01	ci right 9.194839e-01	k: 2077231	n:2260000
KS ci ratio: 1.137008e-01	ci left: 4.957708e-04	ci right 5.559635e-04	k: 1187	n:2260000
NASP   2260000 perm   2542 sec   (889 perm/sec)   p_kst 5.252212e-04   p_cons 9.191288e-01   p_joint 1.151770e-03

Joint ci ratio: 8.004114e-02	ci left: 1.013251e-03	ci right 1.098162e-03	k: 2395	n:2270000
Cons ci ratio: 7.717753e-04	ci left: 9.187706e-01	ci right 9.194803e-01	k: 2086416	n:2270000
KS ci ratio: 1.135099e-01	ci left: 4.952988e-04	ci right 5.553265e-04	k: 1191	n:2270000
NASP   2270000 perm   2562 sec   (886 perm/sec)   p_kst 5.246696e-04   p_cons 9.191260e-01   p_joint 1.055066e-03

Joint ci ratio: 7.985802e-02	ci left: 1.013535e-03	ci right 1.098267e-03	k: 2406	n:2280000
Cons ci ratio: 7.700316e-04	ci left: 9.187809e-01	ci right 9.194891e-01	k: 2095629	n:2280000
KS ci ratio: 1.132726e-01	ci left: 4.952572e-04	ci right 5.551460e-04	k: 1196	n:2280000
NASP   2280000 perm   2583 sec   (883 perm/sec)   p_kst 5.245614e-04   p_cons 9.191355e-01   p_joint 1.055263e-03

Joint ci ratio: 7.632128e-02	ci left: 1.106731e-03	ci right 1.194975e-03	k: 2634	n:2290000
Cons ci ratio: 7.684057e-04	ci left: 9.187706e-01	ci right 9.194773e-01	k: 2104795	n:2290000
KS ci ratio: 1.129898e-01	ci left: 4.956405e-04	ci right 5.554160e-04	k: 1202	n:2290000
NASP   2290000 perm   2605 sec   (879 perm/sec)   p_kst 5.248908e-04   p_cons 9.191245e-01   p_joint 1.150218e-03

Joint ci ratio: 7.620575e-02	ci left: 1.105331e-03	ci right 1.193324e-03	k: 2642	n:2300000
Cons ci ratio: 7.667676e-04	ci left: 9.187647e-01	ci right 9.194699e-01	k: 2113971	n:2300000
KS ci ratio: 1.127557e-01	ci left: 4.955981e-04	ci right 5.552364e-04	k: 1207	n:2300000
NASP   2300000 perm   2625 sec   (876 perm/sec)   p_kst 5.247826e-04   p_cons 9.191178e-01   p_joint 1.148696e-03

Joint ci ratio: 7.596175e-02	ci left: 1.107766e-03	ci right 1.195657e-03	k: 2659	n:2310000
Cons ci ratio: 7.651377e-04	ci left: 9.187593e-01	ci right 9.194630e-01	k: 2123148	n:2310000
KS ci ratio: 1.125695e-01	ci left: 4.951354e-04	ci right 5.546132e-04	k: 1211	n:2310000
NASP   2310000 perm   2646 sec   (873 perm/sec)   p_kst 5.242424e-04   p_cons 9.191117e-01   p_joint 1.151082e-03

Joint ci ratio: 7.577678e-02	ci left: 1.108488e-03	ci right 1.196213e-03	k: 2672	n:2320000
Cons ci ratio: 7.634584e-04	ci left: 9.187657e-01	ci right 9.194678e-01	k: 2132352	n:2320000
KS ci ratio: 1.124768e-01	ci left: 4.938390e-04	ci right 5.531090e-04	k: 1213	n:2320000
NASP   2320000 perm   2666 sec   (870 perm/sec)   p_kst 5.228448e-04   p_cons 9.191172e-01   p_joint 1.151724e-03

Joint ci ratio: 7.559316e-02	ci left: 1.109204e-03	ci right 1.196764e-03	k: 2685	n:2330000
Cons ci ratio: 7.617923e-04	ci left: 9.187715e-01	ci right 9.194721e-01	k: 2141555	n:2330000
KS ci ratio: 1.121080e-01	ci left: 4.950566e-04	ci right 5.542650e-04	k: 1221	n:2330000
NASP   2330000 perm   2687 sec   (867 perm/sec)   p_kst 5.240343e-04   p_cons 9.191223e-01   p_joint 1.152361e-03

Joint ci ratio: 7.542486e-02	ci left: 1.109496e-03	ci right 1.196875e-03	k: 2697	n:2340000
Cons ci ratio: 7.601502e-04	ci left: 9.187747e-01	ci right 9.194738e-01	k: 2150752	n:2340000
KS ci ratio: 1.118337e-01	ci left: 4.954333e-04	ci right 5.545322e-04	k: 1227	n:2340000
NASP   2340000 perm   2708 sec   (864 perm/sec)   p_kst 5.243590e-04   p_cons 9.191248e-01   p_joint 1.152564e-03

Joint ci ratio: 7.535517e-02	ci left: 1.106862e-03	ci right 1.193949e-03	k: 2702	n:2350000
Cons ci ratio: 7.584752e-04	ci left: 9.187865e-01	ci right 9.194840e-01	k: 2159969	n:2350000
KS ci ratio: 1.116974e-01	ci left: 4.945659e-04	ci right 5.534847e-04	k: 1230	n:2350000
NASP   2350000 perm   2730 sec   (861 perm/sec)   p_kst 5.234043e-04   p_cons 9.191357e-01   p_joint 1.149787e-03

Joint ci ratio: 7.511923e-02	ci left: 1.109240e-03	ci right 1.196229e-03	k: 2719	n:2360000
Cons ci ratio: 7.569601e-04	ci left: 9.187688e-01	ci right 9.194649e-01	k: 2169117	n:2360000
KS ci ratio: 1.113362e-01	ci left: 4.957656e-04	ci right 5.546238e-04	k: 1238	n:2360000
NASP   2360000 perm   2751 sec   (858 perm/sec)   p_kst 5.245763e-04   p_cons 9.191174e-01   p_joint 1.152119e-03

Joint ci ratio: 7.500906e-02	ci left: 1.107871e-03	ci right 1.194621e-03	k: 2727	n:2370000
Cons ci ratio: 7.553189e-04	ci left: 9.187779e-01	ci right 9.194725e-01	k: 2178328	n:2370000
KS ci ratio: 1.113363e-01	ci left: 4.936737e-04	ci right 5.522836e-04	k: 1238	n:2370000
NASP   2370000 perm   2772 sec   (855 perm/sec)   p_kst 5.223629e-04   p_cons 9.191257e-01   p_joint 1.150633e-03

Joint ci ratio: 7.487198e-02	ci left: 1.107339e-03	ci right 1.193882e-03	k: 2737	n:2380000
Cons ci ratio: 7.537821e-04	ci left: 9.187684e-01	ci right 9.194616e-01	k: 2187495	n:2380000
KS ci ratio: 1.113364e-01	ci left: 4.915994e-04	ci right 5.499632e-04	k: 1238	n:2380000
NASP   2380000 perm   2794 sec   (852 perm/sec)   p_kst 5.201681e-04   p_cons 9.191155e-01   p_joint 1.150000e-03

Joint ci ratio: 7.474926e-02	ci left: 1.106401e-03	ci right 1.192722e-03	k: 2746	n:2390000
Cons ci ratio: 7.522292e-04	ci left: 9.187641e-01	ci right 9.194558e-01	k: 2196674	n:2390000
KS ci ratio: 1.111125e-01	ci left: 4.915764e-04	ci right 5.498123e-04	k: 1243	n:2390000
NASP   2390000 perm   2816 sec   (849 perm/sec)   p_kst 5.200837e-04   p_cons 9.191105e-01   p_joint 1.148954e-03

Joint ci ratio: 7.461360e-02	ci left: 1.105880e-03	ci right 1.191997e-03	k: 2756	n:2400000
Cons ci ratio: 7.506312e-04	ci left: 9.187706e-01	ci right 9.194609e-01	k: 2205879	n:2400000
KS ci ratio: 1.109343e-01	ci left: 4.911485e-04	ci right 5.492343e-04	k: 1247	n:2400000
NASP   2400000 perm   2840 sec   (845 perm/sec)   p_kst 5.195833e-04   p_cons 9.191162e-01   p_joint 1.148333e-03

Joint ci ratio: 7.450564e-02	ci left: 1.104549e-03	ci right 1.190433e-03	k: 2764	n:2410000
Cons ci ratio: 7.491248e-04	ci left: 9.187608e-01	ci right 9.194498e-01	k: 2215045	n:2410000
KS ci ratio: 1.107569e-01	ci left: 4.907243e-04	ci right 5.486611e-04	k: 1251	n:2410000
NASP   2410000 perm   2862 sec   (842 perm/sec)   p_kst 5.190871e-04   p_cons 9.191058e-01   p_joint 1.146888e-03

Joint ci ratio: 7.434448e-02	ci left: 1.104851e-03	ci right 1.190564e-03	k: 2776	n:2420000
Cons ci ratio: 7.476379e-04	ci left: 9.187491e-01	ci right 9.194367e-01	k: 2224206	n:2420000
KS ci ratio: 1.104925e-01	ci left: 4.911073e-04	ci right 5.489418e-04	k: 1257	n:2420000
NASP   2420000 perm   2885 sec   (839 perm/sec)   p_kst 5.194215e-04   p_cons 9.190934e-01   p_joint 1.147107e-03

Joint ci ratio: 7.422434e-02	ci left: 1.103940e-03	ci right 1.189437e-03	k: 2785	n:2430000
Cons ci ratio: 7.460958e-04	ci left: 9.187503e-01	ci right 9.194364e-01	k: 2233398	n:2430000
KS ci ratio: 1.102736e-01	ci left: 4.910871e-04	ci right 5.487972e-04	k: 1262	n:2430000
NASP   2430000 perm   2906 sec   (836 perm/sec)   p_kst 5.193416e-04   p_cons 9.190938e-01   p_joint 1.146091e-03

Joint ci ratio: 7.405174e-02	ci left: 1.104644e-03	ci right 1.189989e-03	k: 2798	n:2440000
Cons ci ratio: 7.445713e-04	ci left: 9.187498e-01	ci right 9.194345e-01	k: 2242586	n:2440000
KS ci ratio: 1.099692e-01	ci left: 4.918643e-04	ci right 5.494959e-04	k: 1269	n:2440000
NASP   2440000 perm   2927 sec   (833 perm/sec)   p_kst 5.200820e-04   p_cons 9.190926e-01   p_joint 1.146721e-03

Joint ci ratio: 7.385406e-02	ci left: 1.106145e-03	ci right 1.191368e-03	k: 2813	n:2450000
Cons ci ratio: 7.431255e-04	ci left: 9.187354e-01	ci right 9.194187e-01	k: 2251740	n:2450000
KS ci ratio: 1.096244e-01	ci left: 4.930323e-04	ci right 5.506079e-04	k: 1277	n:2450000
NASP   2450000 perm   2949 sec   (831 perm/sec)   p_kst 5.212245e-04   p_cons 9.190776e-01   p_joint 1.148163e-03

Joint ci ratio: 7.376244e-02	ci left: 1.104441e-03	ci right 1.189423e-03	k: 2820	n:2460000
Cons ci ratio: 7.416435e-04	ci left: 9.187300e-01	ci right 9.194121e-01	k: 2260916	n:2460000
KS ci ratio: 1.094960e-01	ci left: 4.922142e-04	ci right 5.496226e-04	k: 1280	n:2460000
NASP   2460000 perm   2972 sec   (828 perm/sec)   p_kst 5.203252e-04   p_cons 9.190715e-01   p_joint 1.146341e-03

Joint ci ratio: 7.364509e-02	ci left: 1.103546e-03	ci right 1.188318e-03	k: 2829	n:2470000
Cons ci ratio: 7.401784e-04	ci left: 9.187231e-01	ci right 9.194038e-01	k: 2270088	n:2470000
KS ci ratio: 1.093681e-01	ci left: 4.914027e-04	ci right 5.486453e-04	k: 1283	n:2470000
NASP   2470000 perm   2993 sec   (825 perm/sec)   p_kst 5.194332e-04   p_cons 9.190640e-01   p_joint 1.145344e-03

Joint ci ratio: 7.355425e-02	ci left: 1.101867e-03	ci right 1.186401e-03	k: 2836	n:2480000
Cons ci ratio: 7.386719e-04	ci left: 9.187264e-01	ci right 9.194057e-01	k: 2279285	n:2480000
KS ci ratio: 1.091558e-01	ci left: 4.913823e-04	ci right 5.485042e-04	k: 1288	n:2480000
NASP   2480000 perm   3014 sec   (823 perm/sec)   p_kst 5.193548e-04   p_cons 9.190665e-01   p_joint 1.143548e-03

Joint ci ratio: 1.089868e-01	ci left: 4.909715e-04	ci right 5.479516e-04	k: 1292	n:2490000
Cons ci ratio: 7.370988e-04	ci left: 9.187449e-01	ci right 9.194228e-01	k: 2288520	n:2490000
KS ci ratio: 1.089868e-01	ci left: 4.909715e-04	ci right 5.479516e-04	k: 1292	n:2490000
NASP   2490000 perm   3037 sec   (820 perm/sec)   p_kst 5.188755e-04   p_cons 9.190843e-01   p_joint 5.188755e-04

Joint ci ratio: 1.087348e-01	ci left: 4.913422e-04	ci right 5.482251e-04	k: 1298	n:2500000
Cons ci ratio: 7.356466e-04	ci left: 9.187409e-01	ci right 9.194174e-01	k: 2297699	n:2500000
KS ci ratio: 1.087348e-01	ci left: 4.913422e-04	ci right 5.482251e-04	k: 1298	n:2500000
NASP   2500000 perm   3059 sec   (817 perm/sec)   p_kst 5.192000e-04   p_cons 9.190796e-01   p_joint 5.192000e-04

Joint ci ratio: 1.085261e-01	ci left: 4.913226e-04	ci right 5.480871e-04	k: 1303	n:2510000
Cons ci ratio: 7.342363e-04	ci left: 9.187300e-01	ci right 9.194052e-01	k: 2306861	n:2510000
KS ci ratio: 1.085261e-01	ci left: 4.913226e-04	ci right 5.480871e-04	k: 1303	n:2510000
NASP   2510000 perm   3081 sec   (815 perm/sec)   p_kst 5.191235e-04   p_cons 9.190681e-01   p_joint 5.191235e-04

Joint ci ratio: 7.281353e-02	ci left: 1.106972e-03	ci right 1.191006e-03	k: 2894	n:2520000
Cons ci ratio: 7.328048e-04	ci left: 9.187253e-01	ci right 9.193992e-01	k: 2316038	n:2520000
KS ci ratio: 1.082773e-01	ci left: 4.916893e-04	ci right 5.483576e-04	k: 1309	n:2520000
NASP   2520000 perm   3105 sec   (812 perm/sec)   p_kst 5.194444e-04   p_cons 9.190627e-01   p_joint 1.148413e-03

Joint ci ratio: 7.275083e-02	ci left: 1.104537e-03	ci right 1.188311e-03	k: 2899	n:2530000
Cons ci ratio: 7.313525e-04	ci left: 9.187265e-01	ci right 9.193990e-01	k: 2325230	n:2530000
KS ci ratio: 1.081948e-01	ci left: 4.905150e-04	ci right 5.470021e-04	k: 1311	n:2530000
NASP   2530000 perm   3127 sec   (809 perm/sec)   p_kst 5.181818e-04   p_cons 9.190632e-01   p_joint 1.145850e-03

Joint ci ratio: 1.078664e-01	ci left: 4.916483e-04	ci right 5.480832e-04	k: 1319	n:2540000
Cons ci ratio: 7.298682e-04	ci left: 9.187360e-01	ci right 9.194072e-01	k: 2334443	n:2540000
KS ci ratio: 1.078664e-01	ci left: 4.916483e-04	ci right 5.480832e-04	k: 1319	n:2540000
NASP   2540000 perm   3150 sec   (806 perm/sec)   p_kst 5.192913e-04   p_cons 9.190720e-01   p_joint 5.192913e-04

Joint ci ratio: 1.077034e-01	ci left: 4.912467e-04	ci right 5.475448e-04	k: 1323	n:2550000
Cons ci ratio: 7.285196e-04	ci left: 9.187195e-01	ci right 9.193894e-01	k: 2343590	n:2550000
KS ci ratio: 1.077034e-01	ci left: 4.912467e-04	ci right 5.475448e-04	k: 1323	n:2550000
NASP   2550000 perm   3172 sec   (804 perm/sec)   p_kst 5.188235e-04   p_cons 9.190549e-01   p_joint 5.188235e-04

Joint ci ratio: 7.232808e-02	ci left: 1.104633e-03	ci right 1.187908e-03	k: 2933	n:2560000
Cons ci ratio: 7.270906e-04	ci left: 9.187211e-01	ci right 9.193897e-01	k: 2352783	n:2560000
KS ci ratio: 1.074601e-01	ci left: 4.916084e-04	ci right 5.478127e-04	k: 1329	n:2560000
NASP   2560000 perm   3197 sec   (801 perm/sec)   p_kst 5.191406e-04   p_cons 9.190559e-01   p_joint 1.145703e-03

Joint ci ratio: 1.069785e-01	ci left: 4.942396e-04	ci right 5.504755e-04	k: 1341	n:2570000
Cons ci ratio: 7.256719e-04	ci left: 9.187223e-01	ci right 9.193896e-01	k: 2361975	n:2570000
KS ci ratio: 1.069785e-01	ci left: 4.942396e-04	ci right 5.504755e-04	k: 1341	n:2570000
NASP   2570000 perm   3220 sec   (798 perm/sec)   p_kst 5.217899e-04   p_cons 9.190564e-01   p_joint 5.217899e-04

Joint ci ratio: 1.067401e-01	ci left: 4.945874e-04	ci right 5.507296e-04	k: 1347	n:2580000
Cons ci ratio: 7.243370e-04	ci left: 9.187080e-01	ci right 9.193740e-01	k: 2371127	n:2580000
KS ci ratio: 1.067401e-01	ci left: 4.945874e-04	ci right 5.507296e-04	k: 1347	n:2580000
NASP   2580000 perm   3245 sec   (795 perm/sec)   p_kst 5.220930e-04   p_cons 9.190415e-01   p_joint 5.220930e-04

Joint ci ratio: 7.188837e-02	ci left: 1.105488e-03	ci right 1.188298e-03	k: 2969	n:2590000
Cons ci ratio: 7.229249e-04	ci left: 9.187112e-01	ci right 9.193759e-01	k: 2380324	n:2590000
KS ci ratio: 1.066216e-01	ci left: 4.938052e-04	ci right 5.497924e-04	k: 1350	n:2590000
NASP   2590000 perm   3268 sec   (792 perm/sec)   p_kst 5.212355e-04   p_cons 9.190440e-01   p_joint 1.146332e-03

Joint ci ratio: 7.174357e-02	ci left: 1.105768e-03	ci right 1.188426e-03	k: 2981	n:2600000
Cons ci ratio: 7.214875e-04	ci left: 9.187213e-01	ci right 9.193847e-01	k: 2389539	n:2600000
KS ci ratio: 1.063464e-01	ci left: 4.945265e-04	ci right 5.504418e-04	k: 1357	n:2600000
NASP   2600000 perm   3293 sec   (790 perm/sec)   p_kst 5.219231e-04   p_cons 9.190535e-01   p_joint 1.146538e-03

Joint ci ratio: 7.164757e-02	ci left: 1.104542e-03	ci right 1.186993e-03	k: 2989	n:2610000
Cons ci ratio: 7.201329e-04	ci left: 9.187159e-01	ci right 9.193781e-01	k: 2398714	n:2610000
KS ci ratio: 1.061901e-01	ci left: 4.941236e-04	ci right 5.499061e-04	k: 1361	n:2610000
NASP   2610000 perm   3316 sec   (787 perm/sec)   p_kst 5.214559e-04   p_cons 9.190475e-01   p_joint 1.145211e-03

Joint ci ratio: 7.148039e-02	ci left: 1.105574e-03	ci right 1.187902e-03	k: 3003	n:2620000
Cons ci ratio: 7.186954e-04	ci left: 9.187294e-01	ci right 9.193903e-01	k: 2407938	n:2620000
KS ci ratio: 1.058796e-01	ci left: 4.952101e-04	ci right 5.509416e-04	k: 1369	n:2620000
NASP   2620000 perm   3340 sec   (784 perm/sec)   p_kst 5.225191e-04   p_cons 9.190603e-01   p_joint 1.146183e-03

Joint ci ratio: 7.143295e-02	ci left: 1.102864e-03	ci right 1.184933e-03	k: 3007	n:2630000
Cons ci ratio: 7.173582e-04	ci left: 9.187237e-01	ci right 9.193834e-01	k: 2417112	n:2630000
KS ci ratio: 1.058024e-01	ci left: 4.940675e-04	ci right 5.496274e-04	k: 1371	n:2630000
NASP   2630000 perm   3363 sec   (782 perm/sec)   p_kst 5.212928e-04   p_cons 9.190540e-01   p_joint 1.143346e-03

Joint ci ratio: 7.135004e-02	ci left: 1.101290e-03	ci right 1.183144e-03	k: 3014	n:2640000
Cons ci ratio: 7.159701e-04	ci left: 9.187302e-01	ci right 9.193886e-01	k: 2426318	n:2640000
KS ci ratio: 1.056870e-01	ci left: 4.933024e-04	ci right 5.487119e-04	k: 1374	n:2640000
NASP   2640000 perm   3386 sec   (780 perm/sec)   p_kst 5.204545e-04   p_cons 9.190598e-01   p_joint 1.141667e-03

Joint ci ratio: 7.123202e-02	ci left: 1.100841e-03	ci right 1.182520e-03	k: 3024	n:2650000
Cons ci ratio: 7.145320e-04	ci left: 9.187487e-01	ci right 9.194058e-01	k: 2435556	n:2650000
KS ci ratio: 1.054571e-01	ci left: 4.936452e-04	ci right 5.489652e-04	k: 1380	n:2650000
NASP   2650000 perm   3410 sec   (777 perm/sec)   p_kst 5.207547e-04   p_cons 9.190777e-01   p_joint 1.141132e-03

Joint ci ratio: 7.116156e-02	ci left: 1.098918e-03	ci right 1.180370e-03	k: 3030	n:2660000
Cons ci ratio: 7.131999e-04	ci left: 9.187468e-01	ci right 9.194027e-01	k: 2444740	n:2660000
KS ci ratio: 1.053809e-01	ci left: 4.925214e-04	ci right 5.476731e-04	k: 1382	n:2660000
NASP   2660000 perm   3435 sec   (774 perm/sec)   p_kst 5.195489e-04   p_cons 9.190752e-01   p_joint 1.139098e-03

Joint ci ratio: 7.096276e-02	ci left: 1.101056e-03	ci right 1.182429e-03	k: 3047	n:2670000
Cons ci ratio: 7.118321e-04	ci left: 9.187539e-01	ci right 9.194085e-01	k: 2453948	n:2670000
KS ci ratio: 1.049266e-01	ci left: 4.950530e-04	ci right 5.502344e-04	k: 1394	n:2670000
NASP   2670000 perm   3458 sec   (772 perm/sec)   p_kst 5.220974e-04   p_cons 9.190816e-01   p_joint 1.141199e-03

Joint ci ratio: 7.387085e-02	ci left: 1.010846e-03	ci right 1.088746e-03	k: 2812	n:2680000
Cons ci ratio: 7.104579e-04	ci left: 9.187639e-01	ci right 9.194173e-01	k: 2463164	n:2680000
KS ci ratio: 1.046642e-01	ci left: 4.957493e-04	ci right 5.508617e-04	k: 1401	n:2680000
NASP   2680000 perm   3485 sec   (769 perm/sec)   p_kst 5.227612e-04   p_cons 9.190910e-01   p_joint 1.049254e-03

Joint ci ratio: 7.069652e-02	ci left: 1.101268e-03	ci right 1.182339e-03	k: 3070	n:2690000
Cons ci ratio: 7.091502e-04	ci left: 9.187616e-01	ci right 9.194137e-01	k: 2472347	n:2690000
KS ci ratio: 1.045897e-01	ci left: 4.946304e-04	ci right 5.495768e-04	k: 1403	n:2690000
NASP   2690000 perm   3510 sec   (766 perm/sec)   p_kst 5.215613e-04   p_cons 9.190881e-01   p_joint 1.141264e-03

Joint ci ratio: 7.362266e-02	ci left: 1.010266e-03	ci right 1.087848e-03	k: 2831	n:2700000
Cons ci ratio: 7.078337e-04	ci left: 9.187626e-01	ci right 9.194135e-01	k: 2481539	n:2700000
KS ci ratio: 1.044040e-01	ci left: 4.946019e-04	ci right 5.494416e-04	k: 1408	n:2700000
NASP   2700000 perm   3536 sec   (764 perm/sec)   p_kst 5.214815e-04   p_cons 9.190885e-01   p_joint 1.048519e-03

Joint ci ratio: 7.345422e-02	ci left: 1.011247e-03	ci right 1.088719e-03	k: 2844	n:2710000
Cons ci ratio: 7.065001e-04	ci left: 9.187688e-01	ci right 9.194185e-01	k: 2490745	n:2710000
KS ci ratio: 1.041824e-01	ci left: 4.949330e-04	ci right 5.496859e-04	k: 1414	n:2710000
NASP   2710000 perm   3560 sec   (761 perm/sec)   p_kst 5.217712e-04   p_cons 9.190941e-01   p_joint 1.049446e-03

Joint ci ratio: 7.333833e-02	ci left: 1.010777e-03	ci right 1.088086e-03	k: 2853	n:2720000
Cons ci ratio: 7.051390e-04	ci left: 9.187823e-01	ci right 9.194308e-01	k: 2499971	n:2720000
KS ci ratio: 1.040722e-01	ci left: 4.941876e-04	ci right 5.487966e-04	k: 1417	n:2720000
NASP   2720000 perm   3584 sec   (759 perm/sec)   p_kst 5.209559e-04   p_cons 9.191070e-01   p_joint 1.048897e-03

Joint ci ratio: 7.019546e-02	ci left: 1.100966e-03	ci right 1.181417e-03	k: 3114	n:2730000
Cons ci ratio: 7.037893e-04	ci left: 9.187950e-01	ci right 9.194422e-01	k: 2509195	n:2730000
KS ci ratio: 1.039623e-01	ci left: 4.934477e-04	ci right 5.479139e-04	k: 1420	n:2730000
NASP   2730000 perm   3609 sec   (756 perm/sec)   p_kst 5.201465e-04   p_cons 9.191190e-01   p_joint 1.140659e-03

Joint ci ratio: 7.015053e-02	ci left: 1.098382e-03	ci right 1.178591e-03	k: 3118	n:2740000
Cons ci ratio: 7.024610e-04	ci left: 9.188047e-01	ci right 9.194507e-01	k: 2518411	n:2740000
KS ci ratio: 1.038893e-01	ci left: 4.923578e-04	ci right 5.466631e-04	k: 1422	n:2740000
NASP   2740000 perm   3636 sec   (754 perm/sec)   p_kst 5.189781e-04   p_cons 9.191281e-01   p_joint 1.137956e-03

Joint ci ratio: 6.999359e-02	ci left: 1.099390e-03	ci right 1.179485e-03	k: 3132	n:2750000
Cons ci ratio: 7.011351e-04	ci left: 9.188153e-01	ci right 9.194601e-01	k: 2527630	n:2750000
KS ci ratio: 1.036709e-01	ci left: 4.926926e-04	ci right 5.469137e-04	k: 1428	n:2750000
NASP   2750000 perm   3661 sec   (751 perm/sec)   p_kst 5.192727e-04   p_cons 9.191382e-01   p_joint 1.138909e-03

Joint ci ratio: 6.987104e-02	ci left: 1.099322e-03	ci right 1.179267e-03	k: 3143	n:2760000
Cons ci ratio: 6.997843e-04	ci left: 9.188329e-01	ci right 9.194764e-01	k: 2536868	n:2760000
KS ci ratio: 1.035623e-01	ci left: 4.919662e-04	ci right 5.460472e-04	k: 1431	n:2760000
NASP   2760000 perm   3688 sec   (748 perm/sec)   p_kst 5.184783e-04   p_cons 9.191551e-01   p_joint 1.138768e-03

Joint ci ratio: 6.976021e-02	ci left: 1.098901e-03	ci right 1.178683e-03	k: 3153	n:2770000
Cons ci ratio: 6.985481e-04	ci left: 9.188275e-01	ci right 9.194699e-01	k: 2546043	n:2770000
KS ci ratio: 1.034541e-01	ci left: 4.912452e-04	ci right 5.451870e-04	k: 1434	n:2770000
NASP   2770000 perm   3715 sec   (746 perm/sec)   p_kst 5.176895e-04   p_cons 9.191491e-01   p_joint 1.138267e-03

Joint ci ratio: 6.968298e-02	ci left: 1.097422e-03	ci right 1.177005e-03	k: 3160	n:2780000
Cons ci ratio: 6.972002e-04	ci left: 9.188473e-01	ci right 9.194885e-01	k: 2555288	n:2780000
KS ci ratio: 1.033461e-01	ci left: 4.905293e-04	ci right 5.443329e-04	k: 1437	n:2780000
NASP   2780000 perm   3743 sec   (743 perm/sec)   p_kst 5.169065e-04   p_cons 9.191683e-01   p_joint 1.136691e-03

Joint ci ratio: 6.959501e-02	ci left: 1.096306e-03	ci right 1.175703e-03	k: 3168	n:2790000
Cons ci ratio: 6.959088e-04	ci left: 9.188566e-01	ci right 9.194966e-01	k: 2564504	n:2790000
KS ci ratio: 1.032385e-01	ci left: 4.898186e-04	ci right 5.434850e-04	k: 1440	n:2790000
NASP   2790000 perm   3776 sec   (739 perm/sec)   p_kst 5.161290e-04   p_cons 9.191771e-01   p_joint 1.135484e-03

Joint ci ratio: 6.948548e-02	ci left: 1.095900e-03	ci right 1.175138e-03	k: 3178	n:2800000
Cons ci ratio: 6.946913e-04	ci left: 9.188516e-01	ci right 9.194904e-01	k: 2573680	n:2800000
KS ci ratio: 1.030599e-01	ci left: 4.898089e-04	ci right 5.433757e-04	k: 1445	n:2800000
NASP   2800000 perm   3802 sec   (736 perm/sec)   p_kst 5.160714e-04   p_cons 9.191714e-01   p_joint 1.135000e-03

Joint ci ratio: 7.238118e-02	ci left: 1.004957e-03	ci right 1.080775e-03	k: 2929	n:2810000
Cons ci ratio: 6.934586e-04	ci left: 9.188512e-01	ci right 9.194889e-01	k: 2582869	n:2810000
KS ci ratio: 1.027759e-01	ci left: 4.908395e-04	ci right 5.443622e-04	k: 1453	n:2810000
NASP   2810000 perm   3834 sec   (733 perm/sec)   p_kst 5.170819e-04   p_cons 9.191705e-01   p_joint 1.042349e-03

Joint ci ratio: 7.228260e-02	ci left: 1.004179e-03	ci right 1.079831e-03	k: 2937	n:2820000
Cons ci ratio: 6.922969e-04	ci left: 9.188369e-01	ci right 9.194736e-01	k: 2592019	n:2820000
KS ci ratio: 1.025997e-01	ci left: 4.908265e-04	ci right 5.442504e-04	k: 1458	n:2820000
NASP   2820000 perm   3866 sec   (729 perm/sec)   p_kst 5.170213e-04   p_cons 9.191557e-01   p_joint 1.041489e-03

Joint ci ratio: 7.218442e-02	ci left: 1.003406e-03	ci right 1.078893e-03	k: 2945	n:2830000
Cons ci ratio: 6.910950e-04	ci left: 9.188327e-01	ci right 9.194682e-01	k: 2601197	n:2830000
KS ci ratio: 1.024593e-01	ci left: 4.904693e-04	ci right 5.437769e-04	k: 1462	n:2830000
NASP   2830000 perm   3893 sec   (727 perm/sec)   p_kst 5.166078e-04   p_cons 9.191509e-01   p_joint 1.040636e-03

Joint ci ratio: 6.906321e-02	ci left: 1.093959e-03	ci right 1.172557e-03	k: 3217	n:2840000
Cons ci ratio: 6.898911e-04	ci left: 9.188302e-01	ci right 9.194647e-01	k: 2610380	n:2840000
KS ci ratio: 1.022151e-01	ci left: 4.911440e-04	ci right 5.443901e-04	k: 1469	n:2840000
NASP   2840000 perm   3921 sec   (724 perm/sec)   p_kst 5.172535e-04   p_cons 9.191479e-01   p_joint 1.132746e-03

Joint ci ratio: 7.200142e-02	ci left: 1.001533e-03	ci right 1.076680e-03	k: 2960	n:2850000
Cons ci ratio: 6.887357e-04	ci left: 9.188187e-01	ci right 9.194521e-01	k: 2619537	n:2850000
KS ci ratio: 1.020763e-01	ci left: 4.907883e-04	ci right 5.439193e-04	k: 1473	n:2850000
NASP   2850000 perm   3948 sec   (722 perm/sec)   p_kst 5.168421e-04   p_cons 9.191358e-01   p_joint 1.038596e-03

Joint ci ratio: 7.183176e-02	ci left: 1.002838e-03	ci right 1.077898e-03	k: 2974	n:2860000
Cons ci ratio: 6.875506e-04	ci left: 9.188149e-01	ci right 9.194472e-01	k: 2628716	n:2860000
KS ci ratio: 1.017317e-01	ci left: 4.924797e-04	ci right 5.456030e-04	k: 1483	n:2860000
NASP   2860000 perm   3975 sec   (719 perm/sec)   p_kst 5.185315e-04   p_cons 9.191315e-01   p_joint 1.039860e-03

Joint ci ratio: 7.169932e-02	ci left: 1.003108e-03	ci right 1.078044e-03	k: 2985	n:2870000
Cons ci ratio: 6.863651e-04	ci left: 9.188126e-01	ci right 9.194437e-01	k: 2637899	n:2870000
KS ci ratio: 1.014926e-01	ci left: 4.931408e-04	ci right 5.462029e-04	k: 1490	n:2870000
NASP   2870000 perm   4001 sec   (717 perm/sec)   p_kst 5.191638e-04   p_cons 9.191286e-01   p_joint 1.040070e-03

Joint ci ratio: 7.155566e-02	ci left: 1.003717e-03	ci right 1.078542e-03	k: 2997	n:2880000
Cons ci ratio: 6.851777e-04	ci left: 9.188120e-01	ci right 9.194421e-01	k: 2647087	n:2880000
KS ci ratio: 1.013567e-01	ci left: 4.927822e-04	ci right 5.457305e-04	k: 1494	n:2880000
NASP   2880000 perm   4028 sec   (715 perm/sec)   p_kst 5.187500e-04   p_cons 9.191274e-01   p_joint 1.040625e-03

Joint ci ratio: 7.144852e-02	ci left: 1.003303e-03	ci right 1.077980e-03	k: 3006	n:2890000
Cons ci ratio: 6.839566e-04	ci left: 9.188200e-01	ci right 9.194490e-01	k: 2656300	n:2890000
KS ci ratio: 1.012891e-01	ci left: 4.917515e-04	ci right 5.445518e-04	k: 1496	n:2890000
NASP   2890000 perm   4058 sec   (712 perm/sec)   p_kst 5.176471e-04   p_cons 9.191349e-01   p_joint 1.040138e-03

Joint ci ratio: 7.134185e-02	ci left: 1.002891e-03	ci right 1.077422e-03	k: 3015	n:2900000
Cons ci ratio: 6.827136e-04	ci left: 9.188343e-01	ci right 9.194621e-01	k: 2665531	n:2900000
KS ci ratio: 1.011203e-01	ci left: 4.917363e-04	ci right 5.444418e-04	k: 1501	n:2900000
NASP   2900000 perm   4090 sec   (709 perm/sec)   p_kst 5.175862e-04   p_cons 9.191486e-01   p_joint 1.039655e-03

Joint ci ratio: 7.122388e-02	ci left: 1.002820e-03	ci right 1.077217e-03	k: 3025	n:2910000
Cons ci ratio: 6.814489e-04	ci left: 9.188546e-01	ci right 9.194813e-01	k: 2674780	n:2910000
KS ci ratio: 1.009525e-01	ci left: 4.917213e-04	ci right 5.443325e-04	k: 1506	n:2910000
NASP   2910000 perm   4117 sec   (707 perm/sec)   p_kst 5.175258e-04   p_cons 9.191684e-01   p_joint 1.039519e-03

Joint ci ratio: 1.008522e-01	ci left: 4.910388e-04	ci right 5.435216e-04	k: 1509	n:2920000
Cons ci ratio: 6.802241e-04	ci left: 9.188676e-01	ci right 9.194932e-01	k: 2684008	n:2920000
KS ci ratio: 1.008522e-01	ci left: 4.910388e-04	ci right 5.435216e-04	k: 1509	n:2920000
NASP   2920000 perm   4146 sec   (704 perm/sec)   p_kst 5.167808e-04   p_cons 9.191808e-01   p_joint 5.167808e-04

Joint ci ratio: 1.007522e-01	ci left: 4.903610e-04	ci right 5.427163e-04	k: 1512	n:2930000
Cons ci ratio: 6.791041e-04	ci left: 9.188590e-01	ci right 9.194835e-01	k: 2693173	n:2930000
KS ci ratio: 1.007522e-01	ci left: 4.903610e-04	ci right 5.427163e-04	k: 1512	n:2930000
NASP   2930000 perm   4175 sec   (702 perm/sec)   p_kst 5.160410e-04   p_cons 9.191717e-01   p_joint 5.160410e-04

Joint ci ratio: 1.005861e-01	ci left: 4.903509e-04	ci right 5.426138e-04	k: 1517	n:2940000
Cons ci ratio: 6.779074e-04	ci left: 9.188685e-01	ci right 9.194919e-01	k: 2702391	n:2940000
KS ci ratio: 1.005861e-01	ci left: 4.903509e-04	ci right 5.426138e-04	k: 1517	n:2940000
NASP   2940000 perm   4207 sec   (699 perm/sec)   p_kst 5.159864e-04   p_cons 9.191806e-01   p_joint 5.159864e-04

Joint ci ratio: 1.004539e-01	ci left: 4.900106e-04	ci right 5.421645e-04	k: 1521	n:2950000
Cons ci ratio: 6.768050e-04	ci left: 9.188585e-01	ci right 9.194810e-01	k: 2711552	n:2950000
KS ci ratio: 1.004539e-01	ci left: 4.900106e-04	ci right 5.421645e-04	k: 1521	n:2950000
NASP   2950000 perm   4238 sec   (696 perm/sec)   p_kst 5.155932e-04   p_cons 9.191702e-01   p_joint 5.155932e-04

Joint ci ratio: 1.002236e-01	ci left: 4.906607e-04	ci right 5.427570e-04	k: 1528	n:2960000
Cons ci ratio: 6.756818e-04	ci left: 9.188544e-01	ci right 9.194758e-01	k: 2720730	n:2960000
KS ci ratio: 1.002236e-01	ci left: 4.906607e-04	ci right 5.427570e-04	k: 1528	n:2960000
NASP   2960000 perm   4267 sec   (694 perm/sec)   p_kst 5.162162e-04   p_cons 9.191655e-01   p_joint 5.162162e-04

Joint ci ratio: 1.000275e-01	ci left: 4.909782e-04	ci right 5.430003e-04	k: 1534	n:2970000
Cons ci ratio: 6.745887e-04	ci left: 9.188450e-01	ci right 9.194653e-01	k: 2729892	n:2970000
KS ci ratio: 1.000275e-01	ci left: 4.909782e-04	ci right 5.430003e-04	k: 1534	n:2970000
NASP   2970000 perm   4295 sec   (691 perm/sec)   p_kst 5.164983e-04   p_cons 9.191556e-01   p_joint 5.164983e-04

Joint ci ratio: 9.989748e-02	ci left: 4.906394e-04	ci right 5.425540e-04	k: 1538	n:2980000
Cons ci ratio: 6.734658e-04	ci left: 9.188433e-01	ci right 9.194626e-01	k: 2739077	n:2980000
KS ci ratio: 9.989748e-02	ci left: 4.906394e-04	ci right 5.425540e-04	k: 1538	n:2980000
NASP   2980000 perm   4332 sec   (688 perm/sec)   p_kst 5.161074e-04   p_cons 9.191534e-01   p_joint 5.161074e-04

Outputting figure to mutsig2_images.part000000000112/NASP.2_2504_2980000_0.00051611_0.91915_0.00051611.png
                gene_name: NASP
               theta_stop: 0.100 
                    nperm: 2980000 
                     p_ks: 0.00052 
        ci_ks_bounds_left: 0.00049 
       ci_ks_bounds_right: 0.00054 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.00052 
     ci_joint_bounds_left: 0.00049 
    ci_joint_bounds_right: 0.00054 

Current progress: 50 percent done.
NBPF10
Processing conservation and coverage...
90% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.600512e-02	ci left: 1.645515e-01	ci right 1.794401e-01	k: 1719	n:10000
Cons ci ratio: 1.445416e-01	ci left: 6.361159e-02	ci right 7.361989e-02	k: 684	n:9987
KS ci ratio: 1.156431e-02	ci left: 9.145095e-01	ci right 9.252444e-01	k: 9200	n:10000
NBPF10   10000 perm   4 sec   (2377 perm/sec)   p_kst 9.200000e-01   p_cons 6.848904e-02   p_joint 1.719000e-01

Joint ci ratio: 9.231348e-02	ci left: 7.886975e-02	ci right 8.655209e-02	k: 1653	n:20000
Cons ci ratio: 1.012978e-01	ci left: 6.621052e-02	ci right 7.332448e-02	k: 1392	n:19970
KS ci ratio: 8.063948e-03	ci left: 9.181967e-01	ci right 9.256801e-01	k: 18440	n:20000
NBPF10   20000 perm   9 sec   (2311 perm/sec)   p_kst 9.220000e-01   p_cons 6.970456e-02   p_joint 8.265000e-02

Joint ci ratio: 7.462253e-02	ci left: 8.108143e-02	ci right 8.739936e-02	k: 2526	n:30000
Cons ci ratio: 8.293443e-02	ci left: 6.651189e-02	ci right 7.229950e-02	k: 2078	n:29958
KS ci ratio: 6.611121e-03	ci left: 9.182971e-01	ci right 9.244210e-01	k: 27642	n:30000
NBPF10   30000 perm   12 sec   (2446 perm/sec)   p_kst 9.214000e-01   p_cons 6.936378e-02   p_joint 8.420000e-02

Outputting figure to mutsig2_images.part000000000112/NBPF10.2_10996_30000_0.9214_0.069364_0.0842.png
                gene_name: NBPF10
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.069 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.072 
                  p_joint: 0.084 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.087 

Current progress: 62 percent done.
NCAM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.208232e-02	ci left: 9.076136e-01	ci right 9.187443e-01	k: 9133	n:10000
KS ci ratio: 1.483936e-02	ci left: 8.680521e-01	ci right 8.811288e-01	k: 8747	n:10000
NCAM2   10000 perm   3 sec   (3314 perm/sec)   p_kst 8.747000e-01   p_cons 9.133000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000112/NCAM2.2_2586_10000_0.8747_0.9133_1.png
                gene_name: NCAM2
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
NCKAP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.026393e-03	ci left: 9.738693e-01	ci right 9.798485e-01	k: 9770	n:10000
KS ci ratio: 5.825115e-02	ci left: 3.025284e-01	ci right 3.207814e-01	k: 3116	n:10000
NCKAP5   10000 perm   3 sec   (3602 perm/sec)   p_kst 3.116000e-01   p_cons 9.770000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000112/NCKAP5.2_5802_10000_0.3116_0.977_1.png
                gene_name: NCKAP5
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
NCOA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.190602e-02	ci left: 3.536657e-01	ci right 3.726141e-01	k: 3631	n:10000
Cons ci ratio: 2.023559e-02	ci left: 7.814775e-01	ci right 7.975535e-01	k: 7896	n:10000
KS ci ratio: 3.751414e-01	ci left: 8.776964e-03	ci right 1.291541e-02	k: 107	n:10000
NCOA4   10000 perm   2 sec   (4980 perm/sec)   p_kst 1.070000e-02   p_cons 7.896000e-01   p_joint 3.631000e-01

Joint ci ratio: 6.114873e-02	ci left: 1.652124e-01	ci right 1.756836e-01	k: 3408	n:20000
Cons ci ratio: 1.433008e-02	ci left: 7.833794e-01	ci right 7.947364e-01	k: 15782	n:20000
KS ci ratio: 2.815335e-01	ci left: 8.248793e-03	ci right 1.099660e-02	k: 191	n:20000
NCOA4   20000 perm   4 sec   (4743 perm/sec)   p_kst 9.550000e-03   p_cons 7.891000e-01   p_joint 1.704000e-01

Joint ci ratio: 9.193893e-02	ci left: 5.450066e-02	ci right 5.978551e-02	k: 1713	n:30000
Cons ci ratio: 1.170510e-02	ci left: 7.843048e-01	ci right 7.935725e-01	k: 23669	n:30000
KS ci ratio: 2.302770e-01	ci left: 8.464779e-03	ci right 1.069841e-02	k: 286	n:30000
NCOA4   30000 perm   7 sec   (4614 perm/sec)   p_kst 9.533333e-03   p_cons 7.889667e-01   p_joint 5.710000e-02

Joint ci ratio: 7.470567e-02	ci left: 6.198912e-02	ci right 6.682436e-02	k: 2575	n:40000
Cons ci ratio: 1.014881e-02	ci left: 7.845402e-01	ci right 7.925679e-01	k: 31543	n:40000
KS ci ratio: 2.020189e-01	ci left: 8.382601e-03	ci right 1.028965e-02	k: 372	n:40000
NCOA4   40000 perm   9 sec   (4336 perm/sec)   p_kst 9.300000e-03   p_cons 7.885750e-01   p_joint 6.437500e-02

Joint ci ratio: 4.460070e-02	ci left: 1.308273e-01	ci right 1.368153e-01	k: 6690	n:50000
Cons ci ratio: 9.095190e-03	ci left: 7.843103e-01	ci right 7.914963e-01	k: 39396	n:50000
KS ci ratio: 1.769468e-01	ci left: 8.859481e-03	ci right 1.059815e-02	k: 485	n:50000
NCOA4   50000 perm   12 sec   (4191 perm/sec)   p_kst 9.700000e-03   p_cons 7.879200e-01   p_joint 1.338000e-01

Joint ci ratio: 4.915093e-02	ci left: 9.348924e-02	ci right 9.821660e-02	k: 5750	n:60000
Cons ci ratio: 8.330958e-03	ci left: 7.834839e-01	ci right 7.900550e-01	k: 47207	n:60000
KS ci ratio: 1.635525e-01	ci left: 8.707304e-03	ci right 1.027403e-02	k: 568	n:60000
NCOA4   60000 perm   15 sec   (4101 perm/sec)   p_kst 9.466667e-03   p_cons 7.867833e-01   p_joint 9.583333e-02

Joint ci ratio: 3.880546e-02	ci left: 1.247542e-01	ci right 1.297053e-01	k: 8905	n:70000
Cons ci ratio: 7.697145e-03	ci left: 7.844218e-01	ci right 7.904972e-01	k: 55123	n:70000
KS ci ratio: 1.499265e-01	ci left: 8.945919e-03	ci right 1.040944e-02	k: 676	n:70000
NCOA4   70000 perm   17 sec   (4018 perm/sec)   p_kst 9.657143e-03   p_cons 7.874714e-01   p_joint 1.272143e-01

Joint ci ratio: 3.635916e-02	ci left: 1.245511e-01	ci right 1.291760e-01	k: 10148	n:80000
Cons ci ratio: 7.192411e-03	ci left: 7.849752e-01	ci right 7.906539e-01	k: 63026	n:80000
KS ci ratio: 1.398529e-01	ci left: 9.044482e-03	ci right 1.041642e-02	k: 777	n:80000
NCOA4   80000 perm   20 sec   (3944 perm/sec)   p_kst 9.712500e-03   p_cons 7.878250e-01   p_joint 1.268500e-01

Joint ci ratio: 9.774830e-02	ci left: 1.669673e-02	ci right 1.842345e-02	k: 1579	n:90000
Cons ci ratio: 6.787209e-03	ci left: 7.848349e-01	ci right 7.901910e-01	k: 70877	n:90000
KS ci ratio: 1.317977e-01	ci left: 9.091463e-03	ci right 1.038488e-02	k: 875	n:90000
NCOA4   90000 perm   23 sec   (3881 perm/sec)   p_kst 9.722222e-03   p_cons 7.875222e-01   p_joint 1.754444e-02

Joint ci ratio: 9.231974e-02	ci left: 1.689176e-02	ci right 1.853639e-02	k: 1770	n:100000
Cons ci ratio: 6.423174e-03	ci left: 7.857949e-01	ci right 7.908684e-01	k: 78834	n:100000
KS ci ratio: 1.247327e-01	ci left: 9.169626e-03	ci right 1.039906e-02	k: 977	n:100000
NCOA4   100000 perm   26 sec   (3829 perm/sec)   p_kst 9.770000e-03   p_cons 7.883400e-01   p_joint 1.770000e-02

Joint ci ratio: 3.580951e-02	ci left: 9.647454e-02	ci right 1.000012e-01	k: 10805	n:110000
Cons ci ratio: 6.122319e-03	ci left: 7.860198e-01	ci right 7.908559e-01	k: 86729	n:110000
KS ci ratio: 1.194788e-01	ci left: 9.111576e-03	ci right 1.027813e-02	k: 1065	n:110000
NCOA4   110000 perm   30 sec   (3617 perm/sec)   p_kst 9.681818e-03   p_cons 7.884455e-01   p_joint 9.822727e-02

Joint ci ratio: 8.555967e-02	ci left: 1.645558e-02	ci right 1.793455e-02	k: 2062	n:120000
Cons ci ratio: 5.847095e-03	ci left: 7.869564e-01	ci right 7.915796e-01	k: 94713	n:120000
KS ci ratio: 1.145869e-01	ci left: 9.104593e-03	ci right 1.021930e-02	k: 1158	n:120000
NCOA4   120000 perm   34 sec   (3562 perm/sec)   p_kst 9.650000e-03   p_cons 7.892750e-01   p_joint 1.718333e-02

Joint ci ratio: 3.432498e-02	ci left: 8.960978e-02	ci right 9.274695e-02	k: 11852	n:130000
Cons ci ratio: 5.610918e-03	ci left: 7.874513e-01	ci right 7.918897e-01	k: 102658	n:130000
KS ci ratio: 1.101618e-01	ci left: 9.114474e-03	ci right 1.018449e-02	k: 1253	n:130000
NCOA4   130000 perm   37 sec   (3481 perm/sec)   p_kst 9.638462e-03   p_cons 7.896769e-01   p_joint 9.116923e-02

Joint ci ratio: 3.037052e-02	ci left: 1.047255e-01	ci right 1.079622e-01	k: 14887	n:140000
Cons ci ratio: 5.398649e-03	ci left: 7.880361e-01	ci right 7.923090e-01	k: 110625	n:140000
KS ci ratio: 1.065721e-01	ci left: 9.061064e-03	ci right 1.008797e-02	k: 1339	n:140000
NCOA4   140000 perm   41 sec   (3424 perm/sec)   p_kst 9.564286e-03   p_cons 7.901786e-01   p_joint 1.063357e-01

Joint ci ratio: 2.560985e-02	ci left: 1.333606e-01	ci right 1.368269e-01	k: 20263	n:150000
Cons ci ratio: 5.211478e-03	ci left: 7.883714e-01	ci right 7.924973e-01	k: 118566	n:150000
KS ci ratio: 1.018090e-01	ci left: 9.288150e-03	ci right 1.029093e-02	k: 1467	n:150000
NCOA4   150000 perm   45 sec   (3337 perm/sec)   p_kst 9.780000e-03   p_cons 7.904400e-01   p_joint 1.350867e-01

Joint ci ratio: 2.481518e-02	ci left: 1.332420e-01	ci right 1.365962e-01	k: 21586	n:160000
Cons ci ratio: 5.048695e-03	ci left: 7.882593e-01	ci right 7.922552e-01	k: 126442	n:160000
KS ci ratio: 9.844499e-02	ci left: 9.329187e-03	ci right 1.030120e-02	k: 1569	n:160000
NCOA4   160000 perm   49 sec   (3281 perm/sec)   p_kst 9.806250e-03   p_cons 7.902625e-01   p_joint 1.349125e-01

Outputting figure to mutsig2_images.part000000000112/NCOA4.2_2003_160000_0.0098063_0.79026_0.13491.png
                gene_name: NCOA4
               theta_stop: 0.098 
                    nperm: 160000 
                     p_ks: 0.0098 
        ci_ks_bounds_left: 0.0093 
       ci_ks_bounds_right: 0.010 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000112
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 112 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1729>
Subject: Job 9877622: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1729>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000113> was used as the working directory.
Started at Fri Oct  5 22:48:00 2012
Results reported at Sat Oct  6 04:45:33 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000113.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000113.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 113  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000113.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  21248.01 sec.
    Max Memory :      2324 MB
    Max Swap   :      4847 MB

    Max Processes  :         7
    Max Threads    :        72

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
113
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 113
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 113: processing genes 10156 - 10246
Calculating significance of each gene.
Using projection method.
10156	NDFIP2	1
10157	NDN	1.372551e-03
10158	NDNL2	1
10159	NDOR1	1
10160	NDP	1
10161	NDRG1	1
10162	NDRG2	1
10163	NDRG3	1
10164	NDRG4	1
10165	NDST1	1
10166	NDST2	1.905281e-01
10167	NDST3	1
10168	NDST4	1.981873e-01
10169	NDUFA1	1
10170	NDUFA10	1
10171	NDUFA11	1
10172	NDUFA12	1
10173	NDUFA13	1
10174	NDUFA2	1
10175	NDUFA3	1
10176	NDUFA4	1
10177	NDUFA4L2	1
10178	NDUFA5	1
10179	NDUFA6	1
10180	NDUFA7	1
10181	NDUFA8	1
10182	NDUFA9	1
10183	NDUFAB1	1
10184	NDUFAF1	1
10185	NDUFAF2	1
10186	NDUFAF3	1
10187	NDUFAF4	1
10188	NDUFB1	1
10189	NDUFB10	1
10190	NDUFB11	1
10191	NDUFB2	1
10192	NDUFB3	1
10193	NDUFB4	1
10194	NDUFB5	1
10195	NDUFB6	1
10196	NDUFB7	1
10197	NDUFB8	1
10198	NDUFB9	1
10199	NDUFC1	1
10200	NDUFC2	1
10201	NDUFS1	1
10202	NDUFS2	1
10203	NDUFS3	1
10204	NDUFS4	4.272040e-05
10205	NDUFS5	1
10206	NDUFS6	1
10207	NDUFS7	1
10208	NDUFS8	1
10209	NDUFV1	1.282910e-01
10210	NDUFV2	1
10211	NDUFV3	1
10212	NEB	6.946171e-01
10213	NEBL	1
10214	NECAB1	1
10215	NECAB2	1
10216	NECAB3	1
10217	NECAP1	1
10218	NECAP2	1
10219	NEDD1	1
10220	NEDD4	1
10221	NEDD4L	9.296678e-02
10222	NEDD8	1
10223	NEDD9	1
10224	NEFH	1
10225	NEFL	1
10226	NEFM	2.519431e-01
10227	NEGR1	1
10228	NEIL1	1
10229	NEIL2	1
10230	NEIL3	1.425088e-01
10231	NEK1	9.348172e-02
10232	NEK10	1
10233	NEK11	1
10234	NEK2	1
10235	NEK3	1
10236	NEK4	1
10237	NEK5	1
10238	NEK6	1
10239	NEK7	1
10240	NEK8	1
10241	NEK9	1
10242	NELF	1
10243	NELL1	2.158738e-01
10244	NELL2	1
10245	NENF	1
10246	NEO1	1
Done

Running MutSig 2:
Scatter job 113: processing genes 10156 - 10246
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
NDUFS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 5.631335e-02	ci left: 3.171122e-01	ci right 3.355890e-01	k: 3263	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
NDUFS4   10000 perm   1 sec   (7250 perm/sec)   p_kst 1.000000e-04   p_cons 3.263000e-01   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 3.934006e-02	ci left: 3.251747e-01	ci right 3.382743e-01	k: 6634	n:20000
KS ci ratio: 2.262987e+00	ci left: 1.211069e-05	ci right 3.611872e-04	k: 2	n:20000
NDUFS4   20000 perm   5 sec   (3959 perm/sec)   p_kst 1.000000e-04   p_cons 3.317000e-01   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 3.227498e-02	ci left: 3.242808e-01	ci right 3.349522e-01	k: 9888	n:30000
KS ci ratio: 1.959837e+00	ci left: 2.062288e-05	ci right 2.922143e-04	k: 3	n:30000
NDUFS4   30000 perm   7 sec   (4386 perm/sec)   p_kst 1.000000e-04   p_cons 3.296000e-01   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 2.792304e-02	ci left: 3.254418e-01	ci right 3.346829e-01	k: 13202	n:40000
KS ci ratio: 1.752946e+00	ci left: 2.724728e-05	ci right 2.560197e-04	k: 4	n:40000
NDUFS4   40000 perm   9 sec   (4627 perm/sec)   p_kst 1.000000e-04   p_cons 3.300500e-01   p_joint 0

Joint ci ratio: 8.355546e-01	ci left: 2.600048e-04	ci right 6.419433e-04	k: 21	n:50000
Cons ci ratio: 2.496243e-02	ci left: 3.261575e-01	ci right 3.344222e-01	k: 16514	n:50000
KS ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
NDUFS4   50000 perm   10 sec   (4763 perm/sec)   p_kst 2.000000e-05   p_cons 3.302800e-01   p_joint 4.200000e-04

Joint ci ratio: 8.552573e-01	ci left: 2.036202e-04	ci right 5.147596e-04	k: 20	n:60000
Cons ci ratio: 2.275490e-02	ci left: 3.271515e-01	ci right 3.346982e-01	k: 19855	n:60000
KS ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
NDUFS4   60000 perm   12 sec   (4833 perm/sec)   p_kst 1.666667e-05   p_cons 3.309167e-01   p_joint 3.333333e-04

Joint ci ratio: 7.686270e-01	ci left: 2.311369e-04	ci right 5.271685e-04	k: 25	n:70000
Cons ci ratio: 2.104679e-02	ci left: 3.278559e-01	ci right 3.348438e-01	k: 23194	n:70000
KS ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
NDUFS4   70000 perm   14 sec   (4860 perm/sec)   p_kst 1.428571e-05   p_cons 3.313429e-01   p_joint 3.571429e-04

Joint ci ratio: 8.356267e-01	ci left: 1.624987e-04	ci right 4.012313e-04	k: 21	n:80000
Cons ci ratio: 1.971281e-02	ci left: 3.275146e-01	ci right 3.340476e-01	k: 26462	n:80000
KS ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
NDUFS4   80000 perm   16 sec   (4863 perm/sec)   p_kst 1.250000e-05   p_cons 3.307750e-01   p_joint 2.625000e-04

Joint ci ratio: 8.764364e-01	ci left: 1.271073e-04	ci right 3.296566e-04	k: 19	n:90000
Cons ci ratio: 1.857883e-02	ci left: 3.278591e-01	ci right 3.340185e-01	k: 29784	n:90000
KS ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
NDUFS4   90000 perm   19 sec   (4852 perm/sec)   p_kst 1.111111e-05   p_cons 3.309333e-01   p_joint 2.111111e-04

Joint ci ratio: 9.506541e-01	ci left: 9.145650e-05	ci right 2.598170e-04	k: 16	n:100000
Cons ci ratio: 1.757755e-02	ci left: 3.292208e-01	ci right 3.350690e-01	k: 33214	n:100000
KS ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
NDUFS4   100000 perm   21 sec   (4822 perm/sec)   p_kst 1.000000e-05   p_cons 3.321400e-01   p_joint 1.600000e-04

Joint ci ratio: 8.356594e-01	ci left: 1.181795e-04	ci right 2.918101e-04	k: 21	n:110000
Cons ci ratio: 1.677518e-02	ci left: 3.289448e-01	ci right 3.345186e-01	k: 36490	n:110000
KS ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
NDUFS4   110000 perm   23 sec   (4784 perm/sec)   p_kst 9.090909e-06   p_cons 3.317273e-01   p_joint 1.909091e-04

Joint ci ratio: 8.764619e-01	ci left: 9.532962e-05	ci right 2.472461e-04	k: 19	n:120000
Cons ci ratio: 1.606353e-02	ci left: 3.289945e-01	ci right 3.343303e-01	k: 39799	n:120000
KS ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
NDUFS4   120000 perm   25 sec   (4732 perm/sec)   p_kst 8.333333e-06   p_cons 3.316583e-01   p_joint 1.583333e-04

Joint ci ratio: 8.992405e-01	ci left: 8.206308e-05	ci right 2.188201e-04	k: 18	n:130000
Cons ci ratio: 1.543058e-02	ci left: 3.291789e-01	ci right 3.343055e-01	k: 43126	n:130000
KS ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
NDUFS4   130000 perm   28 sec   (4685 perm/sec)   p_kst 7.692308e-06   p_cons 3.317385e-01   p_joint 1.384615e-04

Joint ci ratio: 8.764729e-01	ci left: 8.171078e-05	ci right 2.119266e-04	k: 19	n:140000
Cons ci ratio: 1.489481e-02	ci left: 3.285136e-01	ci right 3.334506e-01	k: 46337	n:140000
KS ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
NDUFS4   140000 perm   30 sec   (4636 perm/sec)   p_kst 7.142857e-06   p_cons 3.309786e-01   p_joint 1.357143e-04

Joint ci ratio: 8.356827e-01	ci left: 8.666423e-05	ci right 2.139970e-04	k: 21	n:150000
Cons ci ratio: 1.439059e-02	ci left: 3.285720e-01	ci right 3.333412e-01	k: 49643	n:150000
KS ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
NDUFS4   150000 perm   33 sec   (4586 perm/sec)   p_kst 6.666667e-06   p_cons 3.309533e-01   p_joint 1.400000e-04

Joint ci ratio: 8.173152e-01	ci left: 8.617246e-05	ci right 2.081693e-04	k: 22	n:160000
Cons ci ratio: 1.392294e-02	ci left: 3.289874e-01	ci right 3.336062e-01	k: 53007	n:160000
KS ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
NDUFS4   160000 perm   35 sec   (4511 perm/sec)   p_kst 6.250000e-06   p_cons 3.312937e-01   p_joint 1.375000e-04

Joint ci ratio: 8.553588e-01	ci left: 7.186331e-05	ci right 1.816905e-04	k: 20	n:170000
Cons ci ratio: 1.351316e-02	ci left: 3.288629e-01	ci right 3.333429e-01	k: 56287	n:170000
KS ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
NDUFS4   170000 perm   38 sec   (4450 perm/sec)   p_kst 5.882353e-06   p_cons 3.311000e-01   p_joint 1.176471e-04

Joint ci ratio: 8.356934e-01	ci left: 7.221991e-05	ci right 1.783319e-04	k: 21	n:180000
Cons ci ratio: 1.313870e-02	ci left: 3.287151e-01	ci right 3.330681e-01	k: 59560	n:180000
KS ci ratio: 2.771835e+00	ci left: 1.406545e-07	ci right 3.095318e-05	k: 1	n:180000
NDUFS4   180000 perm   41 sec   (4393 perm/sec)   p_kst 5.555556e-06   p_cons 3.308889e-01   p_joint 1.166667e-04

Joint ci ratio: 1.087172e+00	ci left: 3.263502e-05	ci right 1.103215e-04	k: 12	n:190000
Cons ci ratio: 1.279191e-02	ci left: 3.286476e-01	ci right 3.328839e-01	k: 62845	n:190000
KS ci ratio: 2.771837e+00	ci left: 1.332516e-07	ci right 2.932409e-05	k: 1	n:190000
NDUFS4   190000 perm   44 sec   (4317 perm/sec)   p_kst 5.263158e-06   p_cons 3.307632e-01   p_joint 6.315789e-05

Joint ci ratio: 1.131570e+00	ci left: 2.745611e-05	ci right 9.840806e-05	k: 11	n:200000
Cons ci ratio: 1.247769e-02	ci left: 3.283585e-01	ci right 3.324864e-01	k: 66084	n:200000
KS ci ratio: 2.771838e+00	ci left: 1.265890e-07	ci right 2.785790e-05	k: 1	n:200000
NDUFS4   200000 perm   47 sec   (4265 perm/sec)   p_kst 5.000000e-06   p_cons 3.304200e-01   p_joint 5.500000e-05

Joint ci ratio: 1.131572e+00	ci left: 2.614866e-05	ci right 9.372206e-05	k: 11	n:210000
Cons ci ratio: 1.217465e-02	ci left: 3.284929e-01	ci right 3.325213e-01	k: 69406	n:210000
KS ci ratio: 2.771839e+00	ci left: 1.205610e-07	ci right 2.653135e-05	k: 1	n:210000
NDUFS4   210000 perm   50 sec   (4213 perm/sec)   p_kst 4.761905e-06   p_cons 3.305048e-01   p_joint 5.238095e-05

Joint ci ratio: 1.087178e+00	ci left: 2.818474e-05	ci right 9.527799e-05	k: 12	n:220000
Cons ci ratio: 1.189463e-02	ci left: 3.285434e-01	ci right 3.324792e-01	k: 72712	n:220000
KS ci ratio: 2.771840e+00	ci left: 1.150809e-07	ci right 2.532539e-05	k: 1	n:220000
NDUFS4   220000 perm   53 sec   (4146 perm/sec)   p_kst 4.545455e-06   p_cons 3.305091e-01   p_joint 5.454545e-05

Joint ci ratio: 1.181894e+00	ci left: 2.084971e-05	ci right 7.995661e-05	k: 10	n:230000
Cons ci ratio: 1.163799e-02	ci left: 3.284039e-01	ci right 3.322525e-01	k: 75975	n:230000
KS ci ratio: 2.771841e+00	ci left: 1.100774e-07	ci right 2.422430e-05	k: 1	n:230000
NDUFS4   230000 perm   56 sec   (4091 perm/sec)   p_kst 4.347826e-06   p_cons 3.303261e-01   p_joint 4.347826e-05

Joint ci ratio: 1.181895e+00	ci left: 1.998096e-05	ci right 7.662514e-05	k: 10	n:240000
Cons ci ratio: 1.138602e-02	ci left: 3.287137e-01	ci right 3.324820e-01	k: 79343	n:240000
KS ci ratio: 2.771841e+00	ci left: 1.054909e-07	ci right 2.321496e-05	k: 1	n:240000
NDUFS4   240000 perm   60 sec   (4032 perm/sec)   p_kst 4.166667e-06   p_cons 3.305958e-01   p_joint 4.166667e-05

Joint ci ratio: 1.181896e+00	ci left: 1.918172e-05	ci right 7.356019e-05	k: 10	n:250000
Cons ci ratio: 1.115799e-02	ci left: 3.286720e-01	ci right 3.323639e-01	k: 82629	n:250000
KS ci ratio: 2.771842e+00	ci left: 1.012712e-07	ci right 2.228637e-05	k: 1	n:250000
NDUFS4   250000 perm   63 sec   (3982 perm/sec)   p_kst 4.000000e-06   p_cons 3.305160e-01   p_joint 4.000000e-05

Joint ci ratio: 1.181897e+00	ci left: 1.844395e-05	ci right 7.073100e-05	k: 10	n:260000
Cons ci ratio: 1.094085e-02	ci left: 3.287264e-01	ci right 3.323466e-01	k: 85939	n:260000
KS ci ratio: 2.771843e+00	ci left: 9.737618e-08	ci right 2.142921e-05	k: 1	n:260000
NDUFS4   260000 perm   66 sec   (3933 perm/sec)   p_kst 3.846154e-06   p_cons 3.305346e-01   p_joint 3.846154e-05

Joint ci ratio: 1.239588e+00	ci left: 1.524223e-05	ci right 6.327610e-05	k: 9	n:270000
Cons ci ratio: 1.073152e-02	ci left: 3.289587e-01	ci right 3.325116e-01	k: 89298	n:270000
KS ci ratio: 2.771843e+00	ci left: 9.376965e-08	ci right 2.063554e-05	k: 1	n:270000
NDUFS4   270000 perm   70 sec   (3880 perm/sec)   p_kst 3.703704e-06   p_cons 3.307333e-01   p_joint 3.333333e-05

Joint ci ratio: 1.385907e+00	ci left: 1.005135e-05	ci right 5.150887e-05	k: 7	n:280000
Cons ci ratio: 1.053970e-02	ci left: 3.289253e-01	ci right 3.324139e-01	k: 92587	n:280000
KS ci ratio: 2.771844e+00	ci left: 9.042074e-08	ci right 1.989856e-05	k: 1	n:280000
NDUFS4   280000 perm   73 sec   (3831 perm/sec)   p_kst 3.571429e-06   p_cons 3.306679e-01   p_joint 2.500000e-05

Joint ci ratio: 1.385908e+00	ci left: 9.704753e-06	ci right 4.973273e-05	k: 7	n:290000
Cons ci ratio: 1.035685e-02	ci left: 3.289360e-01	ci right 3.323639e-01	k: 95888	n:290000
KS ci ratio: 2.771844e+00	ci left: 8.730278e-08	ci right 1.921241e-05	k: 1	n:290000
NDUFS4   290000 perm   77 sec   (3784 perm/sec)   p_kst 3.448276e-06   p_cons 3.306483e-01   p_joint 2.413793e-05

Joint ci ratio: 1.239590e+00	ci left: 1.371800e-05	ci right 5.694858e-05	k: 9	n:300000
Cons ci ratio: 1.018128e-02	ci left: 3.290298e-01	ci right 3.324002e-01	k: 99214	n:300000
KS ci ratio: 2.771845e+00	ci left: 8.439269e-08	ci right 1.857200e-05	k: 1	n:300000
NDUFS4   300000 perm   80 sec   (3740 perm/sec)   p_kst 3.333333e-06   p_cons 3.307133e-01   p_joint 3.000000e-05

Joint ci ratio: 1.181902e+00	ci left: 1.546910e-05	ci right 5.932293e-05	k: 10	n:310000
Cons ci ratio: 1.001975e-02	ci left: 3.288795e-01	ci right 3.321946e-01	k: 102466	n:310000
KS ci ratio: 2.263198e+00	ci left: 7.813212e-07	ci right 2.330525e-05	k: 2	n:310000
NDUFS4   310000 perm   84 sec   (3696 perm/sec)   p_kst 6.451613e-06   p_cons 3.305355e-01   p_joint 3.225806e-05

Joint ci ratio: 1.131584e+00	ci left: 1.716000e-05	ci right 6.150554e-05	k: 11	n:320000
Cons ci ratio: 9.859189e-03	ci left: 3.290294e-01	ci right 3.322925e-01	k: 105811	n:320000
KS ci ratio: 1.959985e+00	ci left: 1.933355e-06	ci right 2.739748e-05	k: 3	n:320000
NDUFS4   320000 perm   88 sec   (3653 perm/sec)   p_kst 9.375000e-06   p_cons 3.306594e-01   p_joint 3.437500e-05

Joint ci ratio: 1.239592e+00	ci left: 1.247090e-05	ci right 5.177150e-05	k: 9	n:330000
Cons ci ratio: 9.710827e-03	ci left: 3.289556e-01	ci right 3.321686e-01	k: 109085	n:330000
KS ci ratio: 1.959985e+00	ci left: 1.874768e-06	ci right 2.656726e-05	k: 3	n:330000
NDUFS4   330000 perm   91 sec   (3611 perm/sec)   p_kst 9.090909e-06   p_cons 3.305606e-01   p_joint 2.727273e-05

Joint ci ratio: 1.181904e+00	ci left: 1.410417e-05	ci right 5.408862e-05	k: 10	n:340000
Cons ci ratio: 9.566359e-03	ci left: 3.290070e-01	ci right 3.321724e-01	k: 112400	n:340000
KS ci ratio: 1.959986e+00	ci left: 1.819628e-06	ci right 2.578588e-05	k: 3	n:340000
NDUFS4   340000 perm   95 sec   (3570 perm/sec)   p_kst 8.823529e-06   p_cons 3.305882e-01   p_joint 2.941176e-05

Joint ci ratio: 1.181904e+00	ci left: 1.370119e-05	ci right 5.254324e-05	k: 10	n:350000
Cons ci ratio: 9.431441e-03	ci left: 3.289016e-01	ci right 3.320212e-01	k: 115661	n:350000
KS ci ratio: 1.959986e+00	ci left: 1.767638e-06	ci right 2.504915e-05	k: 3	n:350000
NDUFS4   350000 perm   99 sec   (3529 perm/sec)   p_kst 8.571429e-06   p_cons 3.304600e-01   p_joint 2.857143e-05

Joint ci ratio: 1.131586e+00	ci left: 1.525332e-05	ci right 5.467167e-05	k: 11	n:360000
Cons ci ratio: 9.301256e-03	ci left: 3.288413e-01	ci right 3.319170e-01	k: 118936	n:360000
KS ci ratio: 1.959986e+00	ci left: 1.718537e-06	ci right 2.435334e-05	k: 3	n:360000
NDUFS4   360000 perm   103 sec   (3490 perm/sec)   p_kst 8.333333e-06   p_cons 3.303778e-01   p_joint 3.055556e-05

Joint ci ratio: 1.131587e+00	ci left: 1.484106e-05	ci right 5.319407e-05	k: 11	n:370000
Cons ci ratio: 9.172674e-03	ci left: 3.289600e-01	ci right 3.319940e-01	k: 122276	n:370000
KS ci ratio: 1.959987e+00	ci left: 1.672090e-06	ci right 2.369515e-05	k: 3	n:370000
NDUFS4   370000 perm   107 sec   (3452 perm/sec)   p_kst 8.108108e-06   p_cons 3.304757e-01   p_joint 2.972973e-05

Joint ci ratio: 1.131587e+00	ci left: 1.445051e-05	ci right 5.179425e-05	k: 11	n:380000
Cons ci ratio: 9.052403e-03	ci left: 3.289203e-01	ci right 3.319139e-01	k: 125558	n:380000
KS ci ratio: 1.959987e+00	ci left: 1.628087e-06	ci right 2.307160e-05	k: 3	n:380000
NDUFS4   380000 perm   111 sec   (3414 perm/sec)   p_kst 7.894737e-06   p_cons 3.304158e-01   p_joint 2.894737e-05

Joint ci ratio: 1.131588e+00	ci left: 1.407998e-05	ci right 5.046620e-05	k: 11	n:390000
Cons ci ratio: 8.932704e-03	ci left: 3.290826e-01	ci right 3.320379e-01	k: 128918	n:390000
KS ci ratio: 1.959987e+00	ci left: 1.586342e-06	ci right 2.248002e-05	k: 3	n:390000
NDUFS4   390000 perm   116 sec   (3373 perm/sec)   p_kst 7.692308e-06   p_cons 3.305590e-01   p_joint 2.820513e-05

Joint ci ratio: 1.131588e+00	ci left: 1.372798e-05	ci right 4.920456e-05	k: 11	n:400000
Cons ci ratio: 8.557312e-03	ci left: 3.426201e-01	ci right 3.455671e-01	k: 137637	n:400000
KS ci ratio: 1.959988e+00	ci left: 1.546683e-06	ci right 2.191802e-05	k: 3	n:400000
NDUFS4   400000 perm   120 sec   (3337 perm/sec)   p_kst 7.500000e-06   p_cons 3.440925e-01   p_joint 2.750000e-05

Joint ci ratio: 1.131589e+00	ci left: 1.339315e-05	ci right 4.800446e-05	k: 11	n:410000
Cons ci ratio: 8.452674e-03	ci left: 3.426189e-01	ci right 3.455296e-01	k: 141070	n:410000
KS ci ratio: 1.959988e+00	ci left: 1.508959e-06	ci right 2.138344e-05	k: 3	n:410000
NDUFS4   410000 perm   124 sec   (3302 perm/sec)   p_kst 7.317073e-06   p_cons 3.440732e-01   p_joint 2.682927e-05

Joint ci ratio: 1.047645e+00	ci left: 1.648094e-05	ci right 5.292893e-05	k: 13	n:420000
Cons ci ratio: 8.349051e-03	ci left: 3.427654e-01	ci right 3.456415e-01	k: 144565	n:420000
KS ci ratio: 1.753065e+00	ci left: 2.594923e-06	ci right 2.438455e-05	k: 4	n:420000
NDUFS4   420000 perm   129 sec   (3267 perm/sec)   p_kst 9.523810e-06   p_cons 3.442024e-01   p_joint 3.095238e-05

Joint ci ratio: 1.012121e+00	ci left: 1.779995e-05	ci right 5.462642e-05	k: 14	n:430000
Cons ci ratio: 8.251145e-03	ci left: 3.427961e-01	ci right 3.456386e-01	k: 148013	n:430000
KS ci ratio: 1.753065e+00	ci left: 2.534576e-06	ci right 2.381748e-05	k: 4	n:430000
NDUFS4   430000 perm   133 sec   (3233 perm/sec)   p_kst 9.302326e-06   p_cons 3.442163e-01   p_joint 3.255814e-05

Joint ci ratio: 1.012121e+00	ci left: 1.739540e-05	ci right 5.338493e-05	k: 14	n:440000
Cons ci ratio: 8.160877e-03	ci left: 3.425895e-01	ci right 3.453990e-01	k: 151357	n:440000
KS ci ratio: 1.753065e+00	ci left: 2.476972e-06	ci right 2.327617e-05	k: 4	n:440000
NDUFS4   440000 perm   138 sec   (3185 perm/sec)   p_kst 9.090909e-06   p_cons 3.439932e-01   p_joint 3.181818e-05

Joint ci ratio: 1.012122e+00	ci left: 1.700883e-05	ci right 5.219861e-05	k: 14	n:450000
Cons ci ratio: 8.068458e-03	ci left: 3.426741e-01	ci right 3.454523e-01	k: 154828	n:450000
KS ci ratio: 1.753066e+00	ci left: 2.421928e-06	ci right 2.275893e-05	k: 4	n:450000
NDUFS4   450000 perm   143 sec   (3152 perm/sec)   p_kst 8.888889e-06   p_cons 3.440622e-01   p_joint 3.111111e-05

Joint ci ratio: 1.012122e+00	ci left: 1.663908e-05	ci right 5.106387e-05	k: 14	n:460000
Cons ci ratio: 7.979493e-03	ci left: 3.427335e-01	ci right 3.454815e-01	k: 158289	n:460000
KS ci ratio: 1.753066e+00	ci left: 2.369277e-06	ci right 2.226417e-05	k: 4	n:460000
NDUFS4   460000 perm   148 sec   (3116 perm/sec)   p_kst 8.695652e-06   p_cons 3.441065e-01   p_joint 3.043478e-05

Joint ci ratio: 1.012122e+00	ci left: 1.628505e-05	ci right 4.997741e-05	k: 14	n:470000
Cons ci ratio: 7.894003e-03	ci left: 3.427566e-01	ci right 3.454751e-01	k: 161734	n:470000
KS ci ratio: 1.753066e+00	ci left: 2.318867e-06	ci right 2.179047e-05	k: 4	n:470000
NDUFS4   470000 perm   152 sec   (3085 perm/sec)   p_kst 8.510638e-06   p_cons 3.441149e-01   p_joint 2.978723e-05

Joint ci ratio: 9.799826e-01	ci left: 1.749049e-05	ci right 5.154160e-05	k: 15	n:480000
Cons ci ratio: 7.812428e-03	ci left: 3.427081e-01	ci right 3.453980e-01	k: 165145	n:480000
KS ci ratio: 1.753066e+00	ci left: 2.270557e-06	ci right 2.133650e-05	k: 4	n:480000
NDUFS4   480000 perm   157 sec   (3052 perm/sec)   p_kst 8.333333e-06   p_cons 3.440521e-01   p_joint 3.125000e-05

Joint ci ratio: 9.507222e-01	ci left: 1.866416e-05	ci right 5.302599e-05	k: 16	n:490000
Cons ci ratio: 7.734836e-03	ci left: 3.425740e-01	ci right 3.452360e-01	k: 168513	n:490000
KS ci ratio: 1.753067e+00	ci left: 2.224219e-06	ci right 2.090107e-05	k: 4	n:490000
NDUFS4   490000 perm   162 sec   (3022 perm/sec)   p_kst 8.163265e-06   p_cons 3.439041e-01   p_joint 3.265306e-05

Joint ci ratio: 9.507225e-01	ci left: 1.829087e-05	ci right 5.196548e-05	k: 16	n:500000
Cons ci ratio: 7.658558e-03	ci left: 3.425014e-01	ci right 3.451365e-01	k: 171909	n:500000
KS ci ratio: 1.753067e+00	ci left: 2.179735e-06	ci right 2.048305e-05	k: 4	n:500000
NDUFS4   500000 perm   167 sec   (2991 perm/sec)   p_kst 8.000000e-06   p_cons 3.438180e-01   p_joint 3.200000e-05

Joint ci ratio: 9.239356e-01	ci left: 1.941801e-05	ci right 5.336936e-05	k: 17	n:510000
Cons ci ratio: 7.582318e-03	ci left: 3.425610e-01	ci right 3.451702e-01	k: 175371	n:510000
KS ci ratio: 1.753067e+00	ci left: 2.136995e-06	ci right 2.008142e-05	k: 4	n:510000
NDUFS4   510000 perm   173 sec   (2950 perm/sec)   p_kst 7.843137e-06   p_cons 3.438647e-01   p_joint 3.333333e-05

Joint ci ratio: 1.047649e+00	ci left: 1.331151e-05	ci right 4.275038e-05	k: 13	n:520000
Cons ci ratio: 7.511544e-03	ci left: 3.424244e-01	ci right 3.450081e-01	k: 178732	n:520000
KS ci ratio: 1.753067e+00	ci left: 2.095899e-06	ci right 1.969524e-05	k: 4	n:520000
NDUFS4   520000 perm   178 sec   (2921 perm/sec)   p_kst 7.692308e-06   p_cons 3.437154e-01   p_joint 2.500000e-05

Joint ci ratio: 1.047649e+00	ci left: 1.306035e-05	ci right 4.194378e-05	k: 13	n:530000
Cons ci ratio: 7.440970e-03	ci left: 3.423986e-01	ci right 3.449578e-01	k: 182149	n:530000
KS ci ratio: 1.753067e+00	ci left: 2.056353e-06	ci right 1.932364e-05	k: 4	n:530000
NDUFS4   530000 perm   183 sec   (2893 perm/sec)   p_kst 7.547170e-06   p_cons 3.436774e-01   p_joint 2.452830e-05

Joint ci ratio: 1.047650e+00	ci left: 1.281849e-05	ci right 4.116705e-05	k: 13	n:540000
Cons ci ratio: 7.371351e-03	ci left: 3.424350e-01	ci right 3.449704e-01	k: 185599	n:540000
KS ci ratio: 1.753068e+00	ci left: 2.018273e-06	ci right 1.896580e-05	k: 4	n:540000
NDUFS4   540000 perm   188 sec   (2865 perm/sec)   p_kst 7.407407e-06   p_cons 3.437019e-01   p_joint 2.407407e-05

Joint ci ratio: 1.087199e+00	ci left: 1.127382e-05	ci right 3.811166e-05	k: 12	n:550000
Cons ci ratio: 7.303355e-03	ci left: 3.424883e-01	ci right 3.450006e-01	k: 189059	n:550000
KS ci ratio: 1.753068e+00	ci left: 1.981577e-06	ci right 1.862096e-05	k: 4	n:550000
NDUFS4   550000 perm   194 sec   (2838 perm/sec)   p_kst 7.272727e-06   p_cons 3.437436e-01   p_joint 2.181818e-05

Joint ci ratio: 1.087199e+00	ci left: 1.107250e-05	ci right 3.743110e-05	k: 12	n:560000
Cons ci ratio: 7.237178e-03	ci left: 3.425416e-01	ci right 3.450314e-01	k: 192520	n:560000
KS ci ratio: 1.753068e+00	ci left: 1.946191e-06	ci right 1.828845e-05	k: 4	n:560000
NDUFS4   560000 perm   199 sec   (2811 perm/sec)   p_kst 7.142857e-06   p_cons 3.437857e-01   p_joint 2.142857e-05

Joint ci ratio: 1.087199e+00	ci left: 1.087825e-05	ci right 3.677442e-05	k: 12	n:570000
Cons ci ratio: 7.175782e-03	ci left: 3.424038e-01	ci right 3.448714e-01	k: 195873	n:570000
KS ci ratio: 1.753068e+00	ci left: 1.912048e-06	ci right 1.796760e-05	k: 4	n:570000
NDUFS4   570000 perm   205 sec   (2781 perm/sec)   p_kst 7.017544e-06   p_cons 3.436368e-01   p_joint 2.105263e-05

Joint ci ratio: 1.087199e+00	ci left: 1.069069e-05	ci right 3.614038e-05	k: 12	n:580000
Cons ci ratio: 7.112141e-03	ci left: 3.425104e-01	ci right 3.449567e-01	k: 199365	n:580000
KS ci ratio: 1.753068e+00	ci left: 1.879081e-06	ci right 1.765782e-05	k: 4	n:580000
NDUFS4   580000 perm   211 sec   (2753 perm/sec)   p_kst 6.896552e-06   p_cons 3.437328e-01   p_joint 2.068966e-05

Joint ci ratio: 1.047651e+00	ci left: 1.173217e-05	ci right 3.767834e-05	k: 13	n:590000
Cons ci ratio: 7.050375e-03	ci left: 3.425998e-01	ci right 3.450255e-01	k: 202849	n:590000
KS ci ratio: 1.600324e+00	ci left: 2.751677e-06	ci right 1.977672e-05	k: 5	n:590000
NDUFS4   590000 perm   216 sec   (2725 perm/sec)   p_kst 8.474576e-06   p_cons 3.438119e-01   p_joint 2.203390e-05

Joint ci ratio: 1.047651e+00	ci left: 1.153664e-05	ci right 3.705037e-05	k: 13	n:600000
Cons ci ratio: 6.992411e-03	ci left: 3.425431e-01	ci right 3.449484e-01	k: 206247	n:600000
KS ci ratio: 1.600324e+00	ci left: 2.705816e-06	ci right 1.944711e-05	k: 5	n:600000
NDUFS4   600000 perm   222 sec   (2701 perm/sec)   p_kst 8.333333e-06   p_cons 3.437450e-01   p_joint 2.166667e-05

Joint ci ratio: 1.047651e+00	ci left: 1.134751e-05	ci right 3.644300e-05	k: 13	n:610000
Cons ci ratio: 6.935577e-03	ci left: 3.425064e-01	ci right 3.448918e-01	k: 209656	n:610000
KS ci ratio: 1.600324e+00	ci left: 2.661458e-06	ci right 1.912831e-05	k: 5	n:610000
NDUFS4   610000 perm   228 sec   (2677 perm/sec)   p_kst 8.196721e-06   p_cons 3.436984e-01   p_joint 2.131148e-05

Joint ci ratio: 1.047651e+00	ci left: 1.116449e-05	ci right 3.585521e-05	k: 13	n:620000
Cons ci ratio: 6.880451e-03	ci left: 3.424484e-01	ci right 3.448143e-01	k: 213051	n:620000
KS ci ratio: 1.600324e+00	ci left: 2.618531e-06	ci right 1.881979e-05	k: 5	n:620000
NDUFS4   620000 perm   234 sec   (2653 perm/sec)   p_kst 8.064516e-06   p_cons 3.436306e-01   p_joint 2.096774e-05

Joint ci ratio: 1.047652e+00	ci left: 1.098727e-05	ci right 3.528608e-05	k: 13	n:630000
Cons ci ratio: 6.826330e-03	ci left: 3.424114e-01	ci right 3.447583e-01	k: 216458	n:630000
KS ci ratio: 1.600324e+00	ci left: 2.576967e-06	ci right 1.852106e-05	k: 5	n:630000
NDUFS4   630000 perm   240 sec   (2630 perm/sec)   p_kst 7.936508e-06   p_cons 3.435841e-01   p_joint 2.063492e-05

Joint ci ratio: 1.087200e+00	ci left: 9.688435e-06	ci right 3.275225e-05	k: 12	n:640000
Cons ci ratio: 6.771918e-03	ci left: 3.424786e-01	ci right 3.448072e-01	k: 219931	n:640000
KS ci ratio: 1.600325e+00	ci left: 2.536702e-06	ci right 1.823167e-05	k: 5	n:640000
NDUFS4   640000 perm   246 sec   (2601 perm/sec)   p_kst 7.812500e-06   p_cons 3.436422e-01   p_joint 1.875000e-05

Joint ci ratio: 1.047652e+00	ci left: 1.064920e-05	ci right 3.420037e-05	k: 13	n:650000
Cons ci ratio: 6.719130e-03	ci left: 3.425207e-01	ci right 3.448314e-01	k: 223389	n:650000
KS ci ratio: 1.481612e+00	ci left: 3.387537e-06	ci right 2.009139e-05	k: 6	n:650000
NDUFS4   650000 perm   252 sec   (2579 perm/sec)   p_kst 9.230769e-06   p_cons 3.436754e-01   p_joint 2.000000e-05

Joint ci ratio: 1.047652e+00	ci left: 1.048785e-05	ci right 3.368218e-05	k: 13	n:660000
Cons ci ratio: 6.670313e-03	ci left: 3.423755e-01	ci right 3.446683e-01	k: 226724	n:660000
KS ci ratio: 1.481612e+00	ci left: 3.336210e-06	ci right 1.978698e-05	k: 6	n:660000
NDUFS4   660000 perm   258 sec   (2557 perm/sec)   p_kst 9.090909e-06   p_cons 3.435212e-01   p_joint 1.969697e-05

Joint ci ratio: 1.047652e+00	ci left: 1.033131e-05	ci right 3.317947e-05	k: 13	n:670000
Cons ci ratio: 6.619652e-03	ci left: 3.424315e-01	ci right 3.447072e-01	k: 230191	n:670000
KS ci ratio: 1.481612e+00	ci left: 3.286416e-06	ci right 1.949165e-05	k: 6	n:670000
NDUFS4   670000 perm   264 sec   (2535 perm/sec)   p_kst 8.955224e-06   p_cons 3.435687e-01   p_joint 1.940299e-05

Joint ci ratio: 1.047653e+00	ci left: 1.017938e-05	ci right 3.269154e-05	k: 13	n:680000
Cons ci ratio: 6.571862e-03	ci left: 3.423668e-01	ci right 3.446257e-01	k: 233577	n:680000
KS ci ratio: 1.481612e+00	ci left: 3.238086e-06	ci right 1.920501e-05	k: 6	n:680000
NDUFS4   680000 perm   271 sec   (2513 perm/sec)   p_kst 8.823529e-06   p_cons 3.434956e-01   p_joint 1.911765e-05

Joint ci ratio: 1.047653e+00	ci left: 1.003185e-05	ci right 3.221775e-05	k: 13	n:690000
Cons ci ratio: 6.524716e-03	ci left: 3.423302e-01	ci right 3.445725e-01	k: 236981	n:690000
KS ci ratio: 1.481612e+00	ci left: 3.191158e-06	ci right 1.892668e-05	k: 6	n:690000
NDUFS4   690000 perm   277 sec   (2490 perm/sec)   p_kst 8.695652e-06   p_cons 3.434507e-01   p_joint 1.884058e-05

Joint ci ratio: 1.047653e+00	ci left: 9.888539e-06	ci right 3.175750e-05	k: 13	n:700000
Cons ci ratio: 6.477174e-03	ci left: 3.423918e-01	ci right 3.446181e-01	k: 240453	n:700000
KS ci ratio: 1.481612e+00	ci left: 3.145570e-06	ci right 1.865630e-05	k: 6	n:700000
NDUFS4   700000 perm   283 sec   (2469 perm/sec)   p_kst 8.571429e-06   p_cons 3.435043e-01   p_joint 1.857143e-05

Joint ci ratio: 1.047653e+00	ci left: 9.749264e-06	ci right 3.131021e-05	k: 13	n:710000
Cons ci ratio: 6.431982e-03	ci left: 3.423588e-01	ci right 3.445693e-01	k: 243859	n:710000
KS ci ratio: 1.481612e+00	ci left: 3.101266e-06	ci right 1.839353e-05	k: 6	n:710000
NDUFS4   710000 perm   290 sec   (2449 perm/sec)   p_kst 8.450704e-06   p_cons 3.434634e-01   p_joint 1.830986e-05

Joint ci ratio: 1.047653e+00	ci left: 9.613857e-06	ci right 3.087535e-05	k: 13	n:720000
Cons ci ratio: 6.386700e-03	ci left: 3.423989e-01	ci right 3.445940e-01	k: 247317	n:720000
KS ci ratio: 1.481613e+00	ci left: 3.058192e-06	ci right 1.813807e-05	k: 6	n:720000
NDUFS4   720000 perm   296 sec   (2429 perm/sec)   p_kst 8.333333e-06   p_cons 3.434958e-01   p_joint 1.805556e-05

Joint ci ratio: 1.047653e+00	ci left: 9.482160e-06	ci right 3.045240e-05	k: 13	n:730000
Cons ci ratio: 6.342091e-03	ci left: 3.424571e-01	ci right 3.446373e-01	k: 250789	n:730000
KS ci ratio: 1.481613e+00	ci left: 3.016299e-06	ci right 1.788960e-05	k: 6	n:730000
NDUFS4   730000 perm   303 sec   (2410 perm/sec)   p_kst 8.219178e-06   p_cons 3.435466e-01   p_joint 1.780822e-05

Joint ci ratio: 1.047653e+00	ci left: 9.354022e-06	ci right 3.004089e-05	k: 13	n:740000
Cons ci ratio: 6.299763e-03	ci left: 3.424166e-01	ci right 3.445819e-01	k: 254189	n:740000
KS ci ratio: 1.481613e+00	ci left: 2.975538e-06	ci right 1.764785e-05	k: 6	n:740000
NDUFS4   740000 perm   310 sec   (2389 perm/sec)   p_kst 8.108108e-06   p_cons 3.434986e-01   p_joint 1.756757e-05

Joint ci ratio: 1.047654e+00	ci left: 9.229301e-06	ci right 2.964035e-05	k: 13	n:750000
Cons ci ratio: 6.256976e-03	ci left: 3.424705e-01	ci right 3.446214e-01	k: 257659	n:750000
KS ci ratio: 1.481613e+00	ci left: 2.935864e-06	ci right 1.741255e-05	k: 6	n:750000
NDUFS4   750000 perm   317 sec   (2366 perm/sec)   p_kst 8.000000e-06   p_cons 3.435453e-01   p_joint 1.733333e-05

Joint ci ratio: 1.047654e+00	ci left: 9.107863e-06	ci right 2.925034e-05	k: 13	n:760000
Cons ci ratio: 6.215267e-03	ci left: 3.425073e-01	ci right 3.446439e-01	k: 261117	n:760000
KS ci ratio: 1.481613e+00	ci left: 2.897235e-06	ci right 1.718344e-05	k: 6	n:760000
NDUFS4   760000 perm   324 sec   (2347 perm/sec)   p_kst 7.894737e-06   p_cons 3.435750e-01   p_joint 1.710526e-05

Joint ci ratio: 1.047654e+00	ci left: 8.989578e-06	ci right 2.887047e-05	k: 13	n:770000
Cons ci ratio: 6.174808e-03	ci left: 3.425119e-01	ci right 3.446347e-01	k: 264551	n:770000
KS ci ratio: 1.481613e+00	ci left: 2.859608e-06	ci right 1.696028e-05	k: 6	n:770000
NDUFS4   770000 perm   331 sec   (2329 perm/sec)   p_kst 7.792208e-06   p_cons 3.435727e-01   p_joint 1.688312e-05

Joint ci ratio: 1.047654e+00	ci left: 8.874327e-06	ci right 2.850034e-05	k: 13	n:780000
Cons ci ratio: 6.133960e-03	ci left: 3.426024e-01	ci right 3.447116e-01	k: 268052	n:780000
KS ci ratio: 1.481613e+00	ci left: 2.822946e-06	ci right 1.674284e-05	k: 6	n:780000
NDUFS4   780000 perm   338 sec   (2311 perm/sec)   p_kst 7.692308e-06   p_cons 3.436564e-01   p_joint 1.666667e-05

Joint ci ratio: 1.012129e+00	ci left: 9.688552e-06	ci right 2.973352e-05	k: 14	n:790000
Cons ci ratio: 6.096358e-03	ci left: 3.425097e-01	ci right 3.446054e-01	k: 271410	n:790000
KS ci ratio: 1.481613e+00	ci left: 2.787213e-06	ci right 1.653091e-05	k: 6	n:790000
NDUFS4   790000 perm   345 sec   (2291 perm/sec)   p_kst 7.594937e-06   p_cons 3.435570e-01   p_joint 1.772152e-05

Joint ci ratio: 1.012130e+00	ci left: 9.567445e-06	ci right 2.936185e-05	k: 14	n:800000
Cons ci ratio: 6.057793e-03	ci left: 3.425418e-01	ci right 3.446243e-01	k: 274866	n:800000
KS ci ratio: 1.481613e+00	ci left: 2.752373e-06	ci right 1.632427e-05	k: 6	n:800000
NDUFS4   800000 perm   352 sec   (2273 perm/sec)   p_kst 7.500000e-06   p_cons 3.435825e-01   p_joint 1.750000e-05

Joint ci ratio: 1.012130e+00	ci left: 9.449328e-06	ci right 2.899936e-05	k: 14	n:810000
Cons ci ratio: 6.022588e-03	ci left: 3.423757e-01	ci right 3.444451e-01	k: 278162	n:810000
KS ci ratio: 1.481613e+00	ci left: 2.718393e-06	ci right 1.612274e-05	k: 6	n:810000
NDUFS4   810000 perm   359 sec   (2256 perm/sec)   p_kst 7.407407e-06   p_cons 3.434099e-01   p_joint 1.728395e-05

Joint ci ratio: 1.012130e+00	ci left: 9.334092e-06	ci right 2.864571e-05	k: 14	n:820000
Cons ci ratio: 5.986839e-03	ci left: 3.423003e-01	ci right 3.443569e-01	k: 281529	n:820000
KS ci ratio: 1.481614e+00	ci left: 2.685241e-06	ci right 1.592612e-05	k: 6	n:820000
NDUFS4   820000 perm   366 sec   (2239 perm/sec)   p_kst 7.317073e-06   p_cons 3.433280e-01   p_joint 1.707317e-05

Joint ci ratio: 1.012130e+00	ci left: 9.221632e-06	ci right 2.830059e-05	k: 14	n:830000
Cons ci ratio: 5.950208e-03	ci left: 3.423411e-01	ci right 3.443853e-01	k: 284991	n:830000
KS ci ratio: 1.481614e+00	ci left: 2.652889e-06	ci right 1.573424e-05	k: 6	n:830000
NDUFS4   830000 perm   374 sec   (2221 perm/sec)   p_kst 7.228916e-06   p_cons 3.433627e-01   p_joint 1.686747e-05

Joint ci ratio: 1.012130e+00	ci left: 9.111851e-06	ci right 2.796368e-05	k: 14	n:840000
Cons ci ratio: 5.914444e-03	ci left: 3.423655e-01	ci right 3.443975e-01	k: 288440	n:840000
KS ci ratio: 1.481614e+00	ci left: 2.621307e-06	ci right 1.554693e-05	k: 6	n:840000
NDUFS4   840000 perm   381 sec   (2203 perm/sec)   p_kst 7.142857e-06   p_cons 3.433810e-01   p_joint 1.666667e-05

Joint ci ratio: 1.012130e+00	ci left: 9.004652e-06	ci right 2.763469e-05	k: 14	n:850000
Cons ci ratio: 5.878627e-03	ci left: 3.424422e-01	ci right 3.444624e-01	k: 291934	n:850000
KS ci ratio: 1.481614e+00	ci left: 2.590468e-06	ci right 1.536402e-05	k: 6	n:850000
NDUFS4   850000 perm   389 sec   (2187 perm/sec)   p_kst 7.058824e-06   p_cons 3.434518e-01   p_joint 1.647059e-05

Joint ci ratio: 1.012130e+00	ci left: 8.899947e-06	ci right 2.731336e-05	k: 14	n:860000
Cons ci ratio: 5.844463e-03	ci left: 3.424394e-01	ci right 3.444477e-01	k: 295361	n:860000
KS ci ratio: 1.481614e+00	ci left: 2.560346e-06	ci right 1.518537e-05	k: 6	n:860000
NDUFS4   860000 perm   396 sec   (2171 perm/sec)   p_kst 6.976744e-06   p_cons 3.434430e-01   p_joint 1.627907e-05

Joint ci ratio: 1.012130e+00	ci left: 8.797648e-06	ci right 2.699942e-05	k: 14	n:870000
Cons ci ratio: 5.810680e-03	ci left: 3.424527e-01	ci right 3.444495e-01	k: 298802	n:870000
KS ci ratio: 1.481614e+00	ci left: 2.530917e-06	ci right 1.501083e-05	k: 6	n:870000
NDUFS4   870000 perm   404 sec   (2155 perm/sec)   p_kst 6.896552e-06   p_cons 3.434506e-01   p_joint 1.609195e-05

Joint ci ratio: 9.799905e-01	ci left: 9.540242e-06	ci right 2.811373e-05	k: 15	n:880000
Cons ci ratio: 5.777883e-03	ci left: 3.424340e-01	ci right 3.444193e-01	k: 302215	n:880000
KS ci ratio: 1.481614e+00	ci left: 2.502157e-06	ci right 1.484025e-05	k: 6	n:880000
NDUFS4   880000 perm   411 sec   (2139 perm/sec)   p_kst 6.818182e-06   p_cons 3.434261e-01   p_joint 1.704545e-05

Joint ci ratio: 9.799906e-01	ci left: 9.433048e-06	ci right 2.779785e-05	k: 15	n:890000
Cons ci ratio: 5.745421e-03	ci left: 3.424325e-01	ci right 3.444067e-01	k: 305643	n:890000
KS ci ratio: 1.481614e+00	ci left: 2.474042e-06	ci right 1.467351e-05	k: 6	n:890000
NDUFS4   890000 perm   419 sec   (2123 perm/sec)   p_kst 6.741573e-06   p_cons 3.434191e-01   p_joint 1.685393e-05

Joint ci ratio: 9.799907e-01	ci left: 9.328236e-06	ci right 2.748898e-05	k: 15	n:900000
Cons ci ratio: 5.713740e-03	ci left: 3.424123e-01	ci right 3.443754e-01	k: 309054	n:900000
KS ci ratio: 1.481614e+00	ci left: 2.446553e-06	ci right 1.451047e-05	k: 6	n:900000
NDUFS4   900000 perm   427 sec   (2107 perm/sec)   p_kst 6.666667e-06   p_cons 3.433933e-01   p_joint 1.666667e-05

Joint ci ratio: 1.012131e+00	ci left: 8.410937e-06	ci right 2.581264e-05	k: 14	n:910000
Cons ci ratio: 5.682701e-03	ci left: 3.423826e-01	ci right 3.443349e-01	k: 312456	n:910000
KS ci ratio: 1.481614e+00	ci left: 2.419668e-06	ci right 1.435101e-05	k: 6	n:910000
NDUFS4   910000 perm   435 sec   (2092 perm/sec)   p_kst 6.593407e-06   p_cons 3.433582e-01   p_joint 1.538462e-05

Joint ci ratio: 1.012131e+00	ci left: 8.319514e-06	ci right 2.553207e-05	k: 14	n:920000
Cons ci ratio: 5.650842e-03	ci left: 3.424590e-01	ci right 3.444007e-01	k: 315955	n:920000
KS ci ratio: 1.481614e+00	ci left: 2.393367e-06	ci right 1.419503e-05	k: 6	n:920000
NDUFS4   920000 perm   443 sec   (2077 perm/sec)   p_kst 6.521739e-06   p_cons 3.434293e-01   p_joint 1.521739e-05

Joint ci ratio: 1.012131e+00	ci left: 8.230056e-06	ci right 2.525753e-05	k: 14	n:930000
Cons ci ratio: 5.621160e-03	ci left: 3.424016e-01	ci right 3.443327e-01	k: 319331	n:930000
KS ci ratio: 1.481614e+00	ci left: 2.367632e-06	ci right 1.404239e-05	k: 6	n:930000
NDUFS4   930000 perm   451 sec   (2063 perm/sec)   p_kst 6.451613e-06   p_cons 3.433667e-01   p_joint 1.505376e-05

Joint ci ratio: 1.012131e+00	ci left: 8.142502e-06	ci right 2.498883e-05	k: 14	n:940000
Cons ci ratio: 5.590833e-03	ci left: 3.424347e-01	ci right 3.443556e-01	k: 322791	n:940000
KS ci ratio: 1.481614e+00	ci left: 2.342444e-06	ci right 1.389301e-05	k: 6	n:940000
NDUFS4   940000 perm   459 sec   (2049 perm/sec)   p_kst 6.382979e-06   p_cons 3.433947e-01   p_joint 1.489362e-05

Joint ci ratio: 1.012131e+00	ci left: 8.056791e-06	ci right 2.472579e-05	k: 14	n:950000
Cons ci ratio: 5.561057e-03	ci left: 3.424619e-01	ci right 3.443727e-01	k: 326246	n:950000
KS ci ratio: 1.481614e+00	ci left: 2.317787e-06	ci right 1.374676e-05	k: 6	n:950000
NDUFS4   950000 perm   467 sec   (2035 perm/sec)   p_kst 6.315789e-06   p_cons 3.434168e-01   p_joint 1.473684e-05

Joint ci ratio: 1.012131e+00	ci left: 7.972866e-06	ci right 2.446823e-05	k: 14	n:960000
Cons ci ratio: 5.532045e-03	ci left: 3.424647e-01	ci right 3.443655e-01	k: 329678	n:960000
KS ci ratio: 1.481615e+00	ci left: 2.293643e-06	ci right 1.360357e-05	k: 6	n:960000
NDUFS4   960000 perm   475 sec   (2021 perm/sec)   p_kst 6.250000e-06   p_cons 3.434146e-01   p_joint 1.458333e-05

Joint ci ratio: 1.012131e+00	ci left: 7.890672e-06	ci right 2.421599e-05	k: 14	n:970000
Cons ci ratio: 5.503218e-03	ci left: 3.424890e-01	ci right 3.443800e-01	k: 333131	n:970000
KS ci ratio: 1.481615e+00	ci left: 2.269997e-06	ci right 1.346333e-05	k: 6	n:970000
NDUFS4   970000 perm   483 sec   (2007 perm/sec)   p_kst 6.185567e-06   p_cons 3.434340e-01   p_joint 1.443299e-05

Joint ci ratio: 9.799915e-01	ci left: 8.566745e-06	ci right 2.524500e-05	k: 15	n:980000
Cons ci ratio: 5.474454e-03	ci left: 3.425445e-01	ci right 3.444258e-01	k: 336615	n:980000
KS ci ratio: 1.385923e+00	ci left: 2.871804e-06	ci right 1.471696e-05	k: 7	n:980000
NDUFS4   980000 perm   492 sec   (1994 perm/sec)   p_kst 7.142857e-06   p_cons 3.434847e-01   p_joint 1.530612e-05

Joint ci ratio: 9.799916e-01	ci left: 8.480212e-06	ci right 2.499000e-05	k: 15	n:990000
Cons ci ratio: 5.446318e-03	ci left: 3.425837e-01	ci right 3.444556e-01	k: 340084	n:990000
KS ci ratio: 1.385923e+00	ci left: 2.842796e-06	ci right 1.456830e-05	k: 7	n:990000
NDUFS4   990000 perm   500 sec   (1981 perm/sec)   p_kst 7.070707e-06   p_cons 3.435192e-01   p_joint 1.515152e-05

Joint ci ratio: 9.799917e-01	ci left: 8.395410e-06	ci right 2.474010e-05	k: 15	n:1000000
Cons ci ratio: 5.419045e-03	ci left: 3.425862e-01	ci right 3.444487e-01	k: 343517	n:1000000
KS ci ratio: 1.385923e+00	ci left: 2.814368e-06	ci right 1.442262e-05	k: 7	n:1000000
NDUFS4   1000000 perm   508 sec   (1968 perm/sec)   p_kst 7.000000e-06   p_cons 3.435170e-01   p_joint 1.500000e-05

Joint ci ratio: 9.799918e-01	ci left: 8.312287e-06	ci right 2.449515e-05	k: 15	n:1010000
Cons ci ratio: 5.391408e-03	ci left: 3.426530e-01	ci right 3.445063e-01	k: 347015	n:1010000
KS ci ratio: 1.385923e+00	ci left: 2.786502e-06	ci right 1.427982e-05	k: 7	n:1010000
NDUFS4   1010000 perm   517 sec   (1954 perm/sec)   p_kst 6.930693e-06   p_cons 3.435792e-01   p_joint 1.485149e-05

Joint ci ratio: 9.799918e-01	ci left: 8.230793e-06	ci right 2.425500e-05	k: 15	n:1020000
Cons ci ratio: 5.365273e-03	ci left: 3.426274e-01	ci right 3.444716e-01	k: 350420	n:1020000
KS ci ratio: 1.385923e+00	ci left: 2.759184e-06	ci right 1.413983e-05	k: 7	n:1020000
NDUFS4   1020000 perm   525 sec   (1941 perm/sec)   p_kst 6.862745e-06   p_cons 3.435490e-01   p_joint 1.470588e-05

Joint ci ratio: 8.554050e-01	ci left: 1.186074e-05	ci right 2.998856e-05	k: 20	n:1030000
Cons ci ratio: 5.339481e-03	ci left: 3.426052e-01	ci right 3.444404e-01	k: 353828	n:1030000
KS ci ratio: 1.239606e+00	ci left: 3.995515e-06	ci right 1.658712e-05	k: 9	n:1030000
NDUFS4   1030000 perm   534 sec   (1929 perm/sec)   p_kst 8.737864e-06   p_cons 3.435223e-01   p_joint 1.941748e-05

Joint ci ratio: 8.554051e-01	ci left: 1.174669e-05	ci right 2.970021e-05	k: 20	n:1040000
Cons ci ratio: 5.314159e-03	ci left: 3.425748e-01	ci right 3.444011e-01	k: 357227	n:1040000
KS ci ratio: 1.239606e+00	ci left: 3.957097e-06	ci right 1.642763e-05	k: 9	n:1040000
NDUFS4   1040000 perm   543 sec   (1916 perm/sec)   p_kst 8.653846e-06   p_cons 3.434875e-01   p_joint 1.923077e-05

Joint ci ratio: 8.554052e-01	ci left: 1.163482e-05	ci right 2.941735e-05	k: 20	n:1050000
Cons ci ratio: 5.289205e-03	ci left: 3.425441e-01	ci right 3.443616e-01	k: 360625	n:1050000
KS ci ratio: 1.239606e+00	ci left: 3.919410e-06	ci right 1.627118e-05	k: 9	n:1050000
NDUFS4   1050000 perm   552 sec   (1904 perm/sec)   p_kst 8.571429e-06   p_cons 3.434524e-01   p_joint 1.904762e-05

Joint ci ratio: 8.554053e-01	ci left: 1.152506e-05	ci right 2.913983e-05	k: 20	n:1060000
Cons ci ratio: 5.263729e-03	ci left: 3.425884e-01	ci right 3.443974e-01	k: 364102	n:1060000
KS ci ratio: 1.239606e+00	ci left: 3.882435e-06	ci right 1.611768e-05	k: 9	n:1060000
NDUFS4   1060000 perm   560 sec   (1891 perm/sec)   p_kst 8.490566e-06   p_cons 3.434925e-01   p_joint 1.886792e-05

Joint ci ratio: 8.554053e-01	ci left: 1.141734e-05	ci right 2.886750e-05	k: 20	n:1070000
Cons ci ratio: 5.238726e-03	ci left: 3.426226e-01	ci right 3.444231e-01	k: 367569	n:1070000
KS ci ratio: 1.239606e+00	ci left: 3.846150e-06	ci right 1.596705e-05	k: 9	n:1070000
NDUFS4   1070000 perm   570 sec   (1878 perm/sec)   p_kst 8.411215e-06   p_cons 3.435224e-01   p_joint 1.869159e-05

Joint ci ratio: 8.554054e-01	ci left: 1.131163e-05	ci right 2.860021e-05	k: 20	n:1080000
Cons ci ratio: 5.214151e-03	ci left: 3.426497e-01	ci right 3.444419e-01	k: 371029	n:1080000
KS ci ratio: 1.239607e+00	ci left: 3.810537e-06	ci right 1.581920e-05	k: 9	n:1080000
NDUFS4   1080000 perm   579 sec   (1866 perm/sec)   p_kst 8.333333e-06   p_cons 3.435454e-01   p_joint 1.851852e-05

Joint ci ratio: 8.554055e-01	ci left: 1.120785e-05	ci right 2.833782e-05	k: 20	n:1090000
Cons ci ratio: 5.189887e-03	ci left: 3.426791e-01	ci right 3.444630e-01	k: 374492	n:1090000
KS ci ratio: 1.239607e+00	ci left: 3.775578e-06	ci right 1.567407e-05	k: 9	n:1090000
NDUFS4   1090000 perm   588 sec   (1854 perm/sec)   p_kst 8.256881e-06   p_cons 3.435706e-01   p_joint 1.834862e-05

Joint ci ratio: 8.357381e-01	ci left: 1.181761e-05	ci right 2.918234e-05	k: 21	n:1100000
Cons ci ratio: 5.166063e-03	ci left: 3.426988e-01	ci right 3.444747e-01	k: 377945	n:1100000
KS ci ratio: 1.181918e+00	ci left: 4.359453e-06	ci right 1.671844e-05	k: 10	n:1100000
NDUFS4   1100000 perm   597 sec   (1843 perm/sec)   p_kst 9.090909e-06   p_cons 3.435864e-01   p_joint 1.909091e-05

Joint ci ratio: 8.357381e-01	ci left: 1.171115e-05	ci right 2.891943e-05	k: 21	n:1110000
Cons ci ratio: 5.142441e-03	ci left: 3.427291e-01	ci right 3.444970e-01	k: 381410	n:1110000
KS ci ratio: 1.181918e+00	ci left: 4.320178e-06	ci right 1.656783e-05	k: 10	n:1110000
NDUFS4   1110000 perm   606 sec   (1832 perm/sec)   p_kst 9.009009e-06   p_cons 3.436126e-01   p_joint 1.891892e-05

Joint ci ratio: 8.001577e-01	ci left: 1.301792e-05	ci right 3.081350e-05	k: 23	n:1120000
Cons ci ratio: 5.119281e-03	ci left: 3.427463e-01	ci right 3.445063e-01	k: 384861	n:1120000
KS ci ratio: 1.181918e+00	ci left: 4.281605e-06	ci right 1.641990e-05	k: 10	n:1120000
NDUFS4   1120000 perm   615 sec   (1821 perm/sec)   p_kst 8.928571e-06   p_cons 3.436259e-01   p_joint 2.053571e-05

Joint ci ratio: 8.001578e-01	ci left: 1.290272e-05	ci right 3.054081e-05	k: 23	n:1130000
Cons ci ratio: 5.097442e-03	ci left: 3.426739e-01	ci right 3.444260e-01	k: 388211	n:1130000
KS ci ratio: 1.181918e+00	ci left: 4.243715e-06	ci right 1.627459e-05	k: 10	n:1130000
NDUFS4   1130000 perm   625 sec   (1809 perm/sec)   p_kst 8.849558e-06   p_cons 3.435496e-01   p_joint 2.035398e-05

Joint ci ratio: 7.687661e-01	ci left: 1.419187e-05	ci right 3.237258e-05	k: 25	n:1140000
Cons ci ratio: 5.075179e-03	ci left: 3.426651e-01	ci right 3.444094e-01	k: 391632	n:1140000
KS ci ratio: 1.087206e+00	ci left: 5.439112e-06	ci right 1.838728e-05	k: 12	n:1140000
NDUFS4   1140000 perm   634 sec   (1797 perm/sec)   p_kst 1.052632e-05   p_cons 3.435368e-01   p_joint 2.192982e-05

Joint ci ratio: 7.687662e-01	ci left: 1.406847e-05	ci right 3.209108e-05	k: 25	n:1150000
Cons ci ratio: 5.052552e-03	ci left: 3.427146e-01	ci right 3.444514e-01	k: 395120	n:1150000
KS ci ratio: 1.087206e+00	ci left: 5.391816e-06	ci right 1.822739e-05	k: 12	n:1150000
NDUFS4   1150000 perm   644 sec   (1786 perm/sec)   p_kst 1.043478e-05   p_cons 3.435826e-01   p_joint 2.173913e-05

Joint ci ratio: 7.543952e-01	ci left: 1.464148e-05	ci right 3.284123e-05	k: 26	n:1160000
Cons ci ratio: 5.030600e-03	ci left: 3.427297e-01	ci right 3.444590e-01	k: 398569	n:1160000
KS ci ratio: 1.047657e+00	ci left: 5.967213e-06	ci right 1.916406e-05	k: 13	n:1160000
NDUFS4   1160000 perm   653 sec   (1776 perm/sec)   p_kst 1.120690e-05   p_cons 3.435940e-01   p_joint 2.241379e-05

Joint ci ratio: 7.543953e-01	ci left: 1.451634e-05	ci right 3.256054e-05	k: 26	n:1170000
Cons ci ratio: 5.008780e-03	ci left: 3.427582e-01	ci right 3.444802e-01	k: 402034	n:1170000
KS ci ratio: 1.047657e+00	ci left: 5.916212e-06	ci right 1.900026e-05	k: 13	n:1170000
NDUFS4   1170000 perm   663 sec   (1765 perm/sec)   p_kst 1.111111e-05   p_cons 3.436188e-01   p_joint 2.222222e-05

Joint ci ratio: 7.543954e-01	ci left: 1.439332e-05	ci right 3.228460e-05	k: 26	n:1180000
Cons ci ratio: 4.987606e-03	ci left: 3.427532e-01	ci right 3.444679e-01	k: 405460	n:1180000
KS ci ratio: 1.047657e+00	ci left: 5.866074e-06	ci right 1.883924e-05	k: 13	n:1180000
NDUFS4   1180000 perm   673 sec   (1752 perm/sec)   p_kst 1.101695e-05   p_cons 3.436102e-01   p_joint 2.203390e-05

Joint ci ratio: 7.543955e-01	ci left: 1.427237e-05	ci right 3.201330e-05	k: 26	n:1190000
Cons ci ratio: 4.966810e-03	ci left: 3.427383e-01	ci right 3.444457e-01	k: 408874	n:1190000
KS ci ratio: 1.047657e+00	ci left: 5.816779e-06	ci right 1.868093e-05	k: 13	n:1190000
NDUFS4   1190000 perm   683 sec   (1741 perm/sec)   p_kst 1.092437e-05   p_cons 3.435916e-01   p_joint 2.184874e-05

Joint ci ratio: 7.543956e-01	ci left: 1.415343e-05	ci right 3.174653e-05	k: 26	n:1200000
Cons ci ratio: 4.946053e-03	ci left: 3.427436e-01	ci right 3.444438e-01	k: 412312	n:1200000
KS ci ratio: 1.047658e+00	ci left: 5.768306e-06	ci right 1.852526e-05	k: 13	n:1200000
NDUFS4   1200000 perm   693 sec   (1731 perm/sec)   p_kst 1.083333e-05   p_cons 3.435933e-01   p_joint 2.166667e-05

Joint ci ratio: 7.408015e-01	ci left: 1.470515e-05	ci right 3.246561e-05	k: 27	n:1210000
Cons ci ratio: 4.925590e-03	ci left: 3.427455e-01	ci right 3.444387e-01	k: 415746	n:1210000
KS ci ratio: 1.047658e+00	ci left: 5.720634e-06	ci right 1.837216e-05	k: 13	n:1210000
NDUFS4   1210000 perm   703 sec   (1721 perm/sec)   p_kst 1.074380e-05   p_cons 3.435917e-01   p_joint 2.231405e-05

Joint ci ratio: 7.408016e-01	ci left: 1.458461e-05	ci right 3.219950e-05	k: 27	n:1220000
Cons ci ratio: 4.905521e-03	ci left: 3.427343e-01	ci right 3.444205e-01	k: 419164	n:1220000
KS ci ratio: 1.047658e+00	ci left: 5.673743e-06	ci right 1.822157e-05	k: 13	n:1220000
NDUFS4   1220000 perm   713 sec   (1711 perm/sec)   p_kst 1.065574e-05   p_cons 3.435770e-01   p_joint 2.213115e-05

Joint ci ratio: 7.408016e-01	ci left: 1.446604e-05	ci right 3.193771e-05	k: 27	n:1230000
Cons ci ratio: 4.885467e-03	ci left: 3.427444e-01	ci right 3.444238e-01	k: 422608	n:1230000
KS ci ratio: 1.047658e+00	ci left: 5.627615e-06	ci right 1.807342e-05	k: 13	n:1230000
NDUFS4   1230000 perm   723 sec   (1701 perm/sec)   p_kst 1.056911e-05   p_cons 3.435837e-01   p_joint 2.195122e-05

Joint ci ratio: 7.408017e-01	ci left: 1.434938e-05	ci right 3.168015e-05	k: 27	n:1240000
Cons ci ratio: 4.865927e-03	ci left: 3.427294e-01	ci right 3.444020e-01	k: 426021	n:1240000
KS ci ratio: 1.047658e+00	ci left: 5.582231e-06	ci right 1.792767e-05	k: 13	n:1240000
NDUFS4   1240000 perm   733 sec   (1691 perm/sec)   p_kst 1.048387e-05   p_cons 3.435653e-01   p_joint 2.177419e-05

Joint ci ratio: 7.408018e-01	ci left: 1.423458e-05	ci right 3.142671e-05	k: 27	n:1250000
Cons ci ratio: 4.846301e-03	ci left: 3.427442e-01	ci right 3.444101e-01	k: 429471	n:1250000
KS ci ratio: 1.047658e+00	ci left: 5.537573e-06	ci right 1.778425e-05	k: 13	n:1250000
NDUFS4   1250000 perm   744 sec   (1681 perm/sec)   p_kst 1.040000e-05   p_cons 3.435768e-01   p_joint 2.160000e-05

Joint ci ratio: 7.408018e-01	ci left: 1.412161e-05	ci right 3.117729e-05	k: 27	n:1260000
Cons ci ratio: 4.826910e-03	ci left: 3.427588e-01	ci right 3.444181e-01	k: 432921	n:1260000
KS ci ratio: 1.047658e+00	ci left: 5.493624e-06	ci right 1.764311e-05	k: 13	n:1260000
NDUFS4   1260000 perm   754 sec   (1672 perm/sec)   p_kst 1.031746e-05   p_cons 3.435881e-01   p_joint 2.142857e-05

Joint ci ratio: 7.408019e-01	ci left: 1.401042e-05	ci right 3.093181e-05	k: 27	n:1270000
Cons ci ratio: 4.807599e-03	ci left: 3.427874e-01	ci right 3.444401e-01	k: 436389	n:1270000
KS ci ratio: 1.047658e+00	ci left: 5.450367e-06	ci right 1.750419e-05	k: 13	n:1270000
NDUFS4   1270000 perm   764 sec   (1662 perm/sec)   p_kst 1.023622e-05   p_cons 3.436134e-01   p_joint 2.125984e-05

Joint ci ratio: 7.408020e-01	ci left: 1.390096e-05	ci right 3.069015e-05	k: 27	n:1280000
Cons ci ratio: 4.789224e-03	ci left: 3.427491e-01	ci right 3.443953e-01	k: 439772	n:1280000
KS ci ratio: 1.047658e+00	ci left: 5.407786e-06	ci right 1.736743e-05	k: 13	n:1280000
NDUFS4   1280000 perm   774 sec   (1653 perm/sec)   p_kst 1.015625e-05   p_cons 3.435719e-01   p_joint 2.109375e-05

Joint ci ratio: 7.279173e-01	ci left: 1.442315e-05	ci right 3.137023e-05	k: 28	n:1290000
Cons ci ratio: 4.770737e-03	ci left: 3.427417e-01	ci right 3.443815e-01	k: 443194	n:1290000
KS ci ratio: 1.012133e+00	ci left: 5.933292e-06	ci right 1.820894e-05	k: 14	n:1290000
NDUFS4   1290000 perm   785 sec   (1643 perm/sec)   p_kst 1.085271e-05   p_cons 3.435612e-01   p_joint 2.170543e-05

Joint ci ratio: 7.279173e-01	ci left: 1.431220e-05	ci right 3.112892e-05	k: 28	n:1300000
Cons ci ratio: 4.752787e-03	ci left: 3.427036e-01	ci right 3.443371e-01	k: 446576	n:1300000
KS ci ratio: 1.012133e+00	ci left: 5.887651e-06	ci right 1.806887e-05	k: 14	n:1300000
NDUFS4   1300000 perm   796 sec   (1634 perm/sec)   p_kst 1.076923e-05   p_cons 3.435200e-01   p_joint 2.153846e-05

Joint ci ratio: 7.279174e-01	ci left: 1.420294e-05	ci right 3.089130e-05	k: 28	n:1310000
Cons ci ratio: 4.734502e-03	ci left: 3.427173e-01	ci right 3.443445e-01	k: 450025	n:1310000
KS ci ratio: 1.012133e+00	ci left: 5.842707e-06	ci right 1.793094e-05	k: 14	n:1310000
NDUFS4   1310000 perm   806 sec   (1625 perm/sec)   p_kst 1.068702e-05   p_cons 3.435305e-01   p_joint 2.137405e-05

Joint ci ratio: 7.040442e-01	ci left: 1.533405e-05	ci right 3.244444e-05	k: 30	n:1320000
Cons ci ratio: 4.716608e-03	ci left: 3.427133e-01	ci right 3.443343e-01	k: 453451	n:1320000
KS ci ratio: 1.012134e+00	ci left: 5.798444e-06	ci right 1.779510e-05	k: 14	n:1320000
NDUFS4   1320000 perm   817 sec   (1616 perm/sec)   p_kst 1.060606e-05   p_cons 3.435235e-01   p_joint 2.272727e-05

Joint ci ratio: 7.040443e-01	ci left: 1.521875e-05	ci right 3.220050e-05	k: 30	n:1330000
Cons ci ratio: 4.698923e-03	ci left: 3.427087e-01	ci right 3.443236e-01	k: 456876	n:1330000
KS ci ratio: 1.012134e+00	ci left: 5.754846e-06	ci right 1.766131e-05	k: 14	n:1330000
NDUFS4   1330000 perm   828 sec   (1607 perm/sec)   p_kst 1.052632e-05   p_cons 3.435158e-01   p_joint 2.255639e-05

Joint ci ratio: 7.040444e-01	ci left: 1.510518e-05	ci right 3.196019e-05	k: 30	n:1340000
Cons ci ratio: 4.681141e-03	ci left: 3.427325e-01	ci right 3.443413e-01	k: 460339	n:1340000
KS ci ratio: 1.012134e+00	ci left: 5.711900e-06	ci right 1.752951e-05	k: 14	n:1340000
NDUFS4   1340000 perm   839 sec   (1598 perm/sec)   p_kst 1.044776e-05   p_cons 3.435366e-01   p_joint 2.238806e-05

Joint ci ratio: 7.040444e-01	ci left: 1.499329e-05	ci right 3.172345e-05	k: 30	n:1350000
Cons ci ratio: 4.663445e-03	ci left: 3.427670e-01	ci right 3.443699e-01	k: 463817	n:1350000
KS ci ratio: 1.012134e+00	ci left: 5.669589e-06	ci right 1.739966e-05	k: 14	n:1350000
NDUFS4   1350000 perm   850 sec   (1589 perm/sec)   p_kst 1.037037e-05   p_cons 3.435681e-01   p_joint 2.222222e-05

Joint ci ratio: 7.040445e-01	ci left: 1.488304e-05	ci right 3.149019e-05	k: 30	n:1360000
Cons ci ratio: 4.646630e-03	ci left: 3.427349e-01	ci right 3.443319e-01	k: 467205	n:1360000
KS ci ratio: 1.012134e+00	ci left: 5.627901e-06	ci right 1.727172e-05	k: 14	n:1360000
NDUFS4   1360000 perm   860 sec   (1580 perm/sec)   p_kst 1.029412e-05   p_cons 3.435331e-01   p_joint 2.205882e-05

Joint ci ratio: 6.823759e-01	ci left: 1.597668e-05	ci right 3.297389e-05	k: 32	n:1370000
Cons ci ratio: 4.629605e-03	ci left: 3.427413e-01	ci right 3.443324e-01	k: 470645	n:1370000
KS ci ratio: 1.012134e+00	ci left: 5.586821e-06	ci right 1.714565e-05	k: 14	n:1370000
NDUFS4   1370000 perm   871 sec   (1572 perm/sec)   p_kst 1.021898e-05   p_cons 3.435365e-01   p_joint 2.335766e-05

Joint ci ratio: 6.823760e-01	ci left: 1.586090e-05	ci right 3.273495e-05	k: 32	n:1380000
Cons ci ratio: 4.612751e-03	ci left: 3.427489e-01	ci right 3.443343e-01	k: 474087	n:1380000
KS ci ratio: 1.012134e+00	ci left: 5.546337e-06	ci right 1.702141e-05	k: 14	n:1380000
NDUFS4   1380000 perm   883 sec   (1563 perm/sec)   p_kst 1.014493e-05   p_cons 3.435413e-01   p_joint 2.318841e-05

Joint ci ratio: 6.823761e-01	ci left: 1.574680e-05	ci right 3.249945e-05	k: 32	n:1390000
Cons ci ratio: 4.596389e-03	ci left: 3.427263e-01	ci right 3.443060e-01	k: 477487	n:1390000
KS ci ratio: 1.012134e+00	ci left: 5.506435e-06	ci right 1.689895e-05	k: 14	n:1390000
NDUFS4   1390000 perm   894 sec   (1555 perm/sec)   p_kst 1.007194e-05   p_cons 3.435158e-01   p_joint 2.302158e-05

Joint ci ratio: 6.823761e-01	ci left: 1.563432e-05	ci right 3.226731e-05	k: 32	n:1400000
Cons ci ratio: 4.580220e-03	ci left: 3.427019e-01	ci right 3.442759e-01	k: 480884	n:1400000
KS ci ratio: 1.012134e+00	ci left: 5.467103e-06	ci right 1.677824e-05	k: 14	n:1400000
NDUFS4   1400000 perm   905 sec   (1547 perm/sec)   p_kst 1.000000e-05   p_cons 3.434886e-01   p_joint 2.285714e-05

Joint ci ratio: 6.823762e-01	ci left: 1.552344e-05	ci right 3.203847e-05	k: 32	n:1410000
Cons ci ratio: 4.563913e-03	ci left: 3.427083e-01	ci right 3.442767e-01	k: 484324	n:1410000
KS ci ratio: 1.012134e+00	ci left: 5.428330e-06	ci right 1.665925e-05	k: 14	n:1410000
NDUFS4   1410000 perm   917 sec   (1538 perm/sec)   p_kst 9.929078e-06   p_cons 3.434922e-01   p_joint 2.269504e-05

Joint ci ratio: 6.823762e-01	ci left: 1.541412e-05	ci right 3.181285e-05	k: 32	n:1420000
Cons ci ratio: 4.547821e-03	ci left: 3.427105e-01	ci right 3.442733e-01	k: 487758	n:1420000
KS ci ratio: 1.012134e+00	ci left: 5.390102e-06	ci right 1.654193e-05	k: 14	n:1420000
NDUFS4   1420000 perm   928 sec   (1530 perm/sec)   p_kst 9.859155e-06   p_cons 3.434915e-01   p_joint 2.253521e-05

Joint ci ratio: 6.823763e-01	ci left: 1.530633e-05	ci right 3.159038e-05	k: 32	n:1430000
Cons ci ratio: 4.532221e-03	ci left: 3.426804e-01	ci right 3.442377e-01	k: 491146	n:1430000
KS ci ratio: 1.012134e+00	ci left: 5.352409e-06	ci right 1.642625e-05	k: 14	n:1430000
NDUFS4   1430000 perm   940 sec   (1522 perm/sec)   p_kst 9.790210e-06   p_cons 3.434587e-01   p_joint 2.237762e-05

Joint ci ratio: 7.279181e-01	ci left: 1.292073e-05	ci right 2.810251e-05	k: 28	n:1440000
Cons ci ratio: 4.516558e-03	ci left: 3.426730e-01	ci right 3.442249e-01	k: 494566	n:1440000
KS ci ratio: 1.012134e+00	ci left: 5.315239e-06	ci right 1.631218e-05	k: 14	n:1440000
NDUFS4   1440000 perm   951 sec   (1513 perm/sec)   p_kst 9.722222e-06   p_cons 3.434486e-01   p_joint 1.944444e-05

Joint ci ratio: 7.156832e-01	ci left: 1.339435e-05	ci right 2.872321e-05	k: 29	n:1450000
Cons ci ratio: 4.500768e-03	ci left: 3.426946e-01	ci right 3.442412e-01	k: 498028	n:1450000
KS ci ratio: 1.012134e+00	ci left: 5.278582e-06	ci right 1.619969e-05	k: 14	n:1450000
NDUFS4   1450000 perm   963 sec   (1506 perm/sec)   p_kst 9.655172e-06   p_cons 3.434676e-01   p_joint 2.000000e-05

Joint ci ratio: 7.156832e-01	ci left: 1.330261e-05	ci right 2.852648e-05	k: 29	n:1460000
Cons ci ratio: 4.484931e-03	ci left: 3.427372e-01	ci right 3.442785e-01	k: 501521	n:1460000
KS ci ratio: 1.012134e+00	ci left: 5.242428e-06	ci right 1.608873e-05	k: 14	n:1460000
NDUFS4   1460000 perm   975 sec   (1498 perm/sec)   p_kst 9.589041e-06   p_cons 3.435075e-01   p_joint 1.986301e-05

Joint ci ratio: 7.156833e-01	ci left: 1.321212e-05	ci right 2.833242e-05	k: 29	n:1470000
Cons ci ratio: 4.470244e-03	ci left: 3.426800e-01	ci right 3.442159e-01	k: 504868	n:1470000
KS ci ratio: 1.012134e+00	ci left: 5.206765e-06	ci right 1.597928e-05	k: 14	n:1470000
NDUFS4   1470000 perm   987 sec   (1490 perm/sec)   p_kst 9.523810e-06   p_cons 3.434476e-01   p_joint 1.972789e-05

Joint ci ratio: 7.156833e-01	ci left: 1.312285e-05	ci right 2.814099e-05	k: 29	n:1480000
Cons ci ratio: 4.454972e-03	ci left: 3.426971e-01	ci right 3.442278e-01	k: 508324	n:1480000
KS ci ratio: 1.012134e+00	ci left: 5.171584e-06	ci right 1.587131e-05	k: 14	n:1480000
NDUFS4   1480000 perm   999 sec   (1482 perm/sec)   p_kst 9.459459e-06   p_cons 3.434622e-01   p_joint 1.959459e-05

Joint ci ratio: 7.156834e-01	ci left: 1.303477e-05	ci right 2.795212e-05	k: 29	n:1490000
Cons ci ratio: 4.440385e-03	ci left: 3.426603e-01	ci right 3.441859e-01	k: 511700	n:1490000
KS ci ratio: 1.012134e+00	ci left: 5.136875e-06	ci right 1.576480e-05	k: 14	n:1490000
NDUFS4   1490000 perm   1011 sec   (1474 perm/sec)   p_kst 9.395973e-06   p_cons 3.434228e-01   p_joint 1.946309e-05

Joint ci ratio: 7.156834e-01	ci left: 1.294787e-05	ci right 2.776577e-05	k: 29	n:1500000
Cons ci ratio: 4.425528e-03	ci left: 3.426661e-01	ci right 3.441865e-01	k: 515139	n:1500000
KS ci ratio: 1.012134e+00	ci left: 5.102629e-06	ci right 1.565970e-05	k: 14	n:1500000
NDUFS4   1500000 perm   1023 sec   (1467 perm/sec)   p_kst 9.333333e-06   p_cons 3.434260e-01   p_joint 1.933333e-05

Joint ci ratio: 7.156835e-01	ci left: 1.286213e-05	ci right 2.758190e-05	k: 29	n:1510000
Cons ci ratio: 4.410825e-03	ci left: 3.426711e-01	ci right 3.441865e-01	k: 518577	n:1510000
KS ci ratio: 1.012134e+00	ci left: 5.068837e-06	ci right 1.555599e-05	k: 14	n:1510000
NDUFS4   1510000 perm   1035 sec   (1459 perm/sec)   p_kst 9.271523e-06   p_cons 3.434285e-01   p_joint 1.920530e-05

Joint ci ratio: 7.156835e-01	ci left: 1.277751e-05	ci right 2.740044e-05	k: 29	n:1520000
Cons ci ratio: 4.396018e-03	ci left: 3.427016e-01	ci right 3.442121e-01	k: 522054	n:1520000
KS ci ratio: 1.012134e+00	ci left: 5.035489e-06	ci right 1.545365e-05	k: 14	n:1520000
NDUFS4   1520000 perm   1047 sec   (1451 perm/sec)   p_kst 9.210526e-06   p_cons 3.434566e-01   p_joint 1.907895e-05

Joint ci ratio: 7.156836e-01	ci left: 1.269399e-05	ci right 2.722135e-05	k: 29	n:1530000
Cons ci ratio: 4.381384e-03	ci left: 3.427292e-01	ci right 3.442348e-01	k: 525527	n:1530000
KS ci ratio: 1.012134e+00	ci left: 5.002578e-06	ci right 1.535265e-05	k: 14	n:1530000
NDUFS4   1530000 perm   1060 sec   (1444 perm/sec)   p_kst 9.150327e-06   p_cons 3.434817e-01   p_joint 1.895425e-05

Joint ci ratio: 7.040455e-01	ci left: 1.314346e-05	ci right 2.780954e-05	k: 30	n:1540000
Cons ci ratio: 4.366512e-03	ci left: 3.427960e-01	ci right 3.442968e-01	k: 529061	n:1540000
KS ci ratio: 1.012134e+00	ci left: 4.970093e-06	ci right 1.525295e-05	k: 14	n:1540000
NDUFS4   1540000 perm   1072 sec   (1436 perm/sec)   p_kst 9.090909e-06   p_cons 3.435461e-01   p_joint 1.948052e-05

Joint ci ratio: 7.040455e-01	ci left: 1.305867e-05	ci right 2.763012e-05	k: 30	n:1550000
Cons ci ratio: 4.351884e-03	ci left: 3.428523e-01	ci right 3.443483e-01	k: 532580	n:1550000
KS ci ratio: 1.012134e+00	ci left: 4.938028e-06	ci right 1.515455e-05	k: 14	n:1550000
NDUFS4   1550000 perm   1085 sec   (1429 perm/sec)   p_kst 9.032258e-06   p_cons 3.436000e-01   p_joint 1.935484e-05

Joint ci ratio: 7.040456e-01	ci left: 1.297496e-05	ci right 2.745301e-05	k: 30	n:1560000
Cons ci ratio: 4.337790e-03	ci left: 3.428675e-01	ci right 3.443587e-01	k: 536036	n:1560000
KS ci ratio: 1.012134e+00	ci left: 4.906374e-06	ci right 1.505740e-05	k: 14	n:1560000
NDUFS4   1560000 perm   1098 sec   (1421 perm/sec)   p_kst 8.974359e-06   p_cons 3.436128e-01   p_joint 1.923077e-05

Joint ci ratio: 6.929574e-01	ci left: 1.341596e-05	ci right 2.802665e-05	k: 31	n:1570000
Cons ci ratio: 4.324186e-03	ci left: 3.428456e-01	ci right 3.443320e-01	k: 539434	n:1570000
KS ci ratio: 1.012134e+00	ci left: 4.875123e-06	ci right 1.496150e-05	k: 14	n:1570000
NDUFS4   1570000 perm   1110 sec   (1414 perm/sec)   p_kst 8.917197e-06   p_cons 3.435885e-01   p_joint 1.974522e-05

Joint ci ratio: 6.929574e-01	ci left: 1.333105e-05	ci right 2.784927e-05	k: 31	n:1580000
Cons ci ratio: 4.310582e-03	ci left: 3.428373e-01	ci right 3.443189e-01	k: 542853	n:1580000
KS ci ratio: 1.012135e+00	ci left: 4.844268e-06	ci right 1.486680e-05	k: 14	n:1580000
NDUFS4   1580000 perm   1123 sec   (1407 perm/sec)   p_kst 8.860759e-06   p_cons 3.435778e-01   p_joint 1.962025e-05

Joint ci ratio: 6.929575e-01	ci left: 1.324720e-05	ci right 2.767412e-05	k: 31	n:1590000
Cons ci ratio: 4.297016e-03	ci left: 3.428385e-01	ci right 3.443155e-01	k: 546287	n:1590000
KS ci ratio: 1.012135e+00	ci left: 4.813801e-06	ci right 1.477330e-05	k: 14	n:1590000
NDUFS4   1590000 perm   1136 sec   (1400 perm/sec)   p_kst 8.805031e-06   p_cons 3.435767e-01   p_joint 1.949686e-05

Joint ci ratio: 6.929575e-01	ci left: 1.316441e-05	ci right 2.750115e-05	k: 31	n:1600000
Cons ci ratio: 4.283382e-03	ci left: 3.428604e-01	ci right 3.443327e-01	k: 549754	n:1600000
KS ci ratio: 1.012135e+00	ci left: 4.783714e-06	ci right 1.468097e-05	k: 14	n:1600000
NDUFS4   1600000 perm   1149 sec   (1393 perm/sec)   p_kst 8.750000e-06   p_cons 3.435962e-01   p_joint 1.937500e-05

Joint ci ratio: 6.929575e-01	ci left: 1.308264e-05	ci right 2.733034e-05	k: 31	n:1610000
Cons ci ratio: 4.270358e-03	ci left: 3.428310e-01	ci right 3.442987e-01	k: 553139	n:1610000
KS ci ratio: 1.012135e+00	ci left: 4.754002e-06	ci right 1.458978e-05	k: 14	n:1610000
NDUFS4   1610000 perm   1162 sec   (1386 perm/sec)   p_kst 8.695652e-06   p_cons 3.435646e-01   p_joint 1.925466e-05

Joint ci ratio: 6.929576e-01	ci left: 1.300189e-05	ci right 2.716164e-05	k: 31	n:1620000
Cons ci ratio: 4.257331e-03	ci left: 3.428150e-01	ci right 3.442782e-01	k: 556545	n:1620000
KS ci ratio: 1.012135e+00	ci left: 4.724656e-06	ci right 1.449972e-05	k: 14	n:1620000
NDUFS4   1620000 perm   1175 sec   (1379 perm/sec)   p_kst 8.641975e-06   p_cons 3.435463e-01   p_joint 1.913580e-05

Joint ci ratio: 6.929576e-01	ci left: 1.292212e-05	ci right 2.699500e-05	k: 31	n:1630000
Cons ci ratio: 4.244456e-03	ci left: 3.427955e-01	ci right 3.442541e-01	k: 559945	n:1630000
KS ci ratio: 1.012135e+00	ci left: 4.695670e-06	ci right 1.441077e-05	k: 14	n:1630000
NDUFS4   1630000 perm   1188 sec   (1372 perm/sec)   p_kst 8.588957e-06   p_cons 3.435245e-01   p_joint 1.901840e-05

Joint ci ratio: 6.823773e-01	ci left: 1.334636e-05	ci right 2.754529e-05	k: 32	n:1640000
Cons ci ratio: 4.231938e-03	ci left: 3.427506e-01	ci right 3.442048e-01	k: 563303	n:1640000
KS ci ratio: 1.012135e+00	ci left: 4.667038e-06	ci right 1.432290e-05	k: 14	n:1640000
NDUFS4   1640000 perm   1201 sec   (1365 perm/sec)   p_kst 8.536585e-06   p_cons 3.434774e-01   p_joint 1.951220e-05

Joint ci ratio: 6.722673e-01	ci left: 1.376712e-05	ci right 2.808732e-05	k: 33	n:1650000
Cons ci ratio: 4.219172e-03	ci left: 3.427445e-01	ci right 3.441942e-01	k: 566724	n:1650000
KS ci ratio: 1.012135e+00	ci left: 4.638753e-06	ci right 1.423609e-05	k: 14	n:1650000
NDUFS4   1650000 perm   1215 sec   (1358 perm/sec)   p_kst 8.484848e-06   p_cons 3.434691e-01   p_joint 2.000000e-05

Joint ci ratio: 6.722674e-01	ci left: 1.368418e-05	ci right 2.791812e-05	k: 33	n:1660000
Cons ci ratio: 4.206505e-03	ci left: 3.427402e-01	ci right 3.441856e-01	k: 570148	n:1660000
KS ci ratio: 1.012135e+00	ci left: 4.610809e-06	ci right 1.415033e-05	k: 14	n:1660000
NDUFS4   1660000 perm   1228 sec   (1352 perm/sec)   p_kst 8.433735e-06   p_cons 3.434627e-01   p_joint 1.987952e-05

Joint ci ratio: 6.722674e-01	ci left: 1.360224e-05	ci right 2.775095e-05	k: 33	n:1670000
Cons ci ratio: 4.193929e-03	ci left: 3.427384e-01	ci right 3.441795e-01	k: 573576	n:1670000
KS ci ratio: 1.012135e+00	ci left: 4.583199e-06	ci right 1.406560e-05	k: 14	n:1670000
NDUFS4   1670000 perm   1241 sec   (1345 perm/sec)   p_kst 8.383234e-06   p_cons 3.434587e-01   p_joint 1.976048e-05

Joint ci ratio: 6.722675e-01	ci left: 1.352128e-05	ci right 2.758577e-05	k: 33	n:1680000
Cons ci ratio: 4.181233e-03	ci left: 3.427617e-01	ci right 3.441984e-01	k: 577046	n:1680000
KS ci ratio: 1.012135e+00	ci left: 4.555918e-06	ci right 1.398188e-05	k: 14	n:1680000
NDUFS4   1680000 perm   1254 sec   (1339 perm/sec)   p_kst 8.333333e-06   p_cons 3.434798e-01   p_joint 1.964286e-05

Joint ci ratio: 6.722675e-01	ci left: 1.344127e-05	ci right 2.742254e-05	k: 33	n:1690000
Cons ci ratio: 4.168684e-03	ci left: 3.427811e-01	ci right 3.442136e-01	k: 580510	n:1690000
KS ci ratio: 1.012135e+00	ci left: 4.528960e-06	ci right 1.389915e-05	k: 14	n:1690000
NDUFS4   1690000 perm   1268 sec   (1333 perm/sec)   p_kst 8.284024e-06   p_cons 3.434970e-01   p_joint 1.952663e-05

Joint ci ratio: 6.722675e-01	ci left: 1.336220e-05	ci right 2.726123e-05	k: 33	n:1700000
Cons ci ratio: 4.156720e-03	ci left: 3.427491e-01	ci right 3.441773e-01	k: 583887	n:1700000
KS ci ratio: 1.012135e+00	ci left: 4.502319e-06	ci right 1.381739e-05	k: 14	n:1700000
NDUFS4   1700000 perm   1282 sec   (1326 perm/sec)   p_kst 8.235294e-06   p_cons 3.434629e-01   p_joint 1.941176e-05

Joint ci ratio: 7.156843e-01	ci left: 1.135778e-05	ci right 2.435596e-05	k: 29	n:1710000
Cons ci ratio: 4.144546e-03	ci left: 3.427514e-01	ci right 3.441755e-01	k: 587322	n:1710000
KS ci ratio: 1.012135e+00	ci left: 4.475990e-06	ci right 1.373658e-05	k: 14	n:1710000
NDUFS4   1710000 perm   1296 sec   (1320 perm/sec)   p_kst 8.187135e-06   p_cons 3.434632e-01   p_joint 1.695906e-05

Joint ci ratio: 7.156844e-01	ci left: 1.129175e-05	ci right 2.421435e-05	k: 29	n:1720000
Cons ci ratio: 4.132606e-03	ci left: 3.427397e-01	ci right 3.441596e-01	k: 590733	n:1720000
KS ci ratio: 1.012135e+00	ci left: 4.449966e-06	ci right 1.365672e-05	k: 14	n:1720000
NDUFS4   1720000 perm   1309 sec   (1314 perm/sec)   p_kst 8.139535e-06   p_cons 3.434494e-01   p_joint 1.686047e-05

Joint ci ratio: 7.156844e-01	ci left: 1.122648e-05	ci right 2.407438e-05	k: 29	n:1730000
Cons ci ratio: 4.120124e-03	ci left: 3.427987e-01	ci right 3.442145e-01	k: 594266	n:1730000
KS ci ratio: 1.012135e+00	ci left: 4.424244e-06	ci right 1.357778e-05	k: 14	n:1730000
NDUFS4   1730000 perm   1323 sec   (1308 perm/sec)   p_kst 8.092486e-06   p_cons 3.435064e-01   p_joint 1.676301e-05

Joint ci ratio: 7.040463e-01	ci left: 1.163272e-05	ci right 2.461305e-05	k: 30	n:1740000
Cons ci ratio: 4.108588e-03	ci left: 3.427657e-01	ci right 3.441774e-01	k: 597640	n:1740000
KS ci ratio: 9.799952e-01	ci left: 4.824942e-06	ci right 1.421848e-05	k: 15	n:1740000
NDUFS4   1740000 perm   1337 sec   (1301 perm/sec)   p_kst 8.620690e-06   p_cons 3.434713e-01   p_joint 1.724138e-05

Joint ci ratio: 7.040463e-01	ci left: 1.156624e-05	ci right 2.447240e-05	k: 30	n:1750000
Cons ci ratio: 4.096530e-03	ci left: 3.428010e-01	ci right 3.442087e-01	k: 601133	n:1750000
KS ci ratio: 9.799952e-01	ci left: 4.797371e-06	ci right 1.413723e-05	k: 15	n:1750000
NDUFS4   1750000 perm   1351 sec   (1296 perm/sec)   p_kst 8.571429e-06   p_cons 3.435046e-01   p_joint 1.714286e-05

Joint ci ratio: 7.040464e-01	ci left: 1.150053e-05	ci right 2.433336e-05	k: 30	n:1760000
Cons ci ratio: 4.085122e-03	ci left: 3.427757e-01	ci right 3.441794e-01	k: 604520	n:1760000
KS ci ratio: 9.799953e-01	ci left: 4.770113e-06	ci right 1.405690e-05	k: 15	n:1760000
NDUFS4   1760000 perm   1364 sec   (1290 perm/sec)   p_kst 8.522727e-06   p_cons 3.434773e-01   p_joint 1.704545e-05

Joint ci ratio: 7.687694e-01	ci left: 9.140518e-06	ci right 2.085017e-05	k: 25	n:1770000
Cons ci ratio: 4.073784e-03	ci left: 3.427535e-01	ci right 3.441532e-01	k: 607912	n:1770000
KS ci ratio: 9.799953e-01	ci left: 4.743164e-06	ci right 1.397749e-05	k: 15	n:1770000
NDUFS4   1770000 perm   1378 sec   (1284 perm/sec)   p_kst 8.474576e-06   p_cons 3.434531e-01   p_joint 1.412429e-05

Joint ci ratio: 7.687694e-01	ci left: 9.089167e-06	ci right 2.073304e-05	k: 25	n:1780000
Cons ci ratio: 4.062545e-03	ci left: 3.427310e-01	ci right 3.441268e-01	k: 611303	n:1780000
KS ci ratio: 9.799953e-01	ci left: 4.716516e-06	ci right 1.389896e-05	k: 15	n:1780000
NDUFS4   1780000 perm   1392 sec   (1279 perm/sec)   p_kst 8.426966e-06   p_cons 3.434287e-01   p_joint 1.404494e-05

Joint ci ratio: 7.687695e-01	ci left: 9.038389e-06	ci right 2.061721e-05	k: 25	n:1790000
Cons ci ratio: 4.051223e-03	ci left: 3.427284e-01	ci right 3.441202e-01	k: 614729	n:1790000
KS ci ratio: 9.799953e-01	ci left: 4.690167e-06	ci right 1.382131e-05	k: 15	n:1790000
NDUFS4   1790000 perm   1406 sec   (1273 perm/sec)   p_kst 8.379888e-06   p_cons 3.434240e-01   p_joint 1.396648e-05

Joint ci ratio: 7.687695e-01	ci left: 8.988176e-06	ci right 2.050267e-05	k: 25	n:1800000
Cons ci ratio: 4.039627e-03	ci left: 3.427668e-01	ci right 3.441548e-01	k: 618229	n:1800000
KS ci ratio: 9.799954e-01	ci left: 4.664111e-06	ci right 1.374453e-05	k: 15	n:1800000
NDUFS4   1800000 perm   1421 sec   (1267 perm/sec)   p_kst 8.333333e-06   p_cons 3.434606e-01   p_joint 1.388889e-05

Joint ci ratio: 7.687695e-01	ci left: 8.938518e-06	ci right 2.038940e-05	k: 25	n:1810000
Cons ci ratio: 4.028554e-03	ci left: 3.427574e-01	ci right 3.441415e-01	k: 621643	n:1810000
KS ci ratio: 9.799954e-01	ci left: 4.638342e-06	ci right 1.366859e-05	k: 15	n:1810000
NDUFS4   1810000 perm   1435 sec   (1261 perm/sec)   p_kst 8.287293e-06   p_cons 3.434492e-01   p_joint 1.381215e-05

Joint ci ratio: 7.687695e-01	ci left: 8.889405e-06	ci right 2.027737e-05	k: 25	n:1820000
Cons ci ratio: 4.017660e-03	ci left: 3.427381e-01	ci right 3.441184e-01	k: 625039	n:1820000
KS ci ratio: 9.799954e-01	ci left: 4.612857e-06	ci right 1.359349e-05	k: 15	n:1820000
NDUFS4   1820000 perm   1449 sec   (1256 perm/sec)   p_kst 8.241758e-06   p_cons 3.434280e-01   p_joint 1.373626e-05

Joint ci ratio: 7.687696e-01	ci left: 8.840829e-06	ci right 2.016656e-05	k: 25	n:1830000
Cons ci ratio: 4.006285e-03	ci left: 3.427830e-01	ci right 3.441596e-01	k: 628552	n:1830000
KS ci ratio: 9.799954e-01	ci left: 4.587650e-06	ci right 1.351921e-05	k: 15	n:1830000
NDUFS4   1830000 perm   1464 sec   (1250 perm/sec)   p_kst 8.196721e-06   p_cons 3.434710e-01   p_joint 1.366120e-05

Joint ci ratio: 7.543986e-01	ci left: 9.230489e-06	ci right 2.070429e-05	k: 26	n:1840000
Cons ci ratio: 3.995604e-03	ci left: 3.427600e-01	ci right 3.441328e-01	k: 631941	n:1840000
KS ci ratio: 9.799955e-01	ci left: 4.562717e-06	ci right 1.344574e-05	k: 15	n:1840000
NDUFS4   1840000 perm   1478 sec   (1245 perm/sec)   p_kst 8.152174e-06   p_cons 3.434462e-01   p_joint 1.413043e-05

Joint ci ratio: 7.543986e-01	ci left: 9.180595e-06	ci right 2.059238e-05	k: 26	n:1850000
Cons ci ratio: 3.984807e-03	ci left: 3.427600e-01	ci right 3.441291e-01	k: 635372	n:1850000
KS ci ratio: 9.799955e-01	ci left: 4.538053e-06	ci right 1.337306e-05	k: 15	n:1850000
NDUFS4   1850000 perm   1493 sec   (1239 perm/sec)   p_kst 8.108108e-06   p_cons 3.434443e-01   p_joint 1.405405e-05

Joint ci ratio: 7.543987e-01	ci left: 9.131236e-06	ci right 2.048167e-05	k: 26	n:1860000
Cons ci ratio: 3.973870e-03	ci left: 3.427858e-01	ci right 3.441512e-01	k: 638851	n:1860000
KS ci ratio: 9.799955e-01	ci left: 4.513655e-06	ci right 1.330116e-05	k: 15	n:1860000
NDUFS4   1860000 perm   1507 sec   (1234 perm/sec)   p_kst 8.064516e-06   p_cons 3.434683e-01   p_joint 1.397849e-05

Joint ci ratio: 7.543987e-01	ci left: 9.082406e-06	ci right 2.037214e-05	k: 26	n:1870000
Cons ci ratio: 3.963445e-03	ci left: 3.427632e-01	ci right 3.441250e-01	k: 642240	n:1870000
KS ci ratio: 9.799955e-01	ci left: 4.489518e-06	ci right 1.323003e-05	k: 15	n:1870000
NDUFS4   1870000 perm   1522 sec   (1229 perm/sec)   p_kst 8.021390e-06   p_cons 3.434439e-01   p_joint 1.390374e-05

Joint ci ratio: 7.408047e-01	ci left: 9.464473e-06	ci right 2.089545e-05	k: 27	n:1880000
Cons ci ratio: 3.952943e-03	ci left: 3.427590e-01	ci right 3.441171e-01	k: 645663	n:1880000
KS ci ratio: 9.799956e-01	ci left: 4.465638e-06	ci right 1.315966e-05	k: 15	n:1880000
NDUFS4   1880000 perm   1536 sec   (1224 perm/sec)   p_kst 7.978723e-06   p_cons 3.434378e-01   p_joint 1.436170e-05

Joint ci ratio: 7.279199e-01	ci left: 9.844359e-06	ci right 2.141146e-05	k: 28	n:1890000
Cons ci ratio: 3.942335e-03	ci left: 3.427764e-01	ci right 3.441309e-01	k: 649127	n:1890000
KS ci ratio: 9.799956e-01	ci left: 4.442010e-06	ci right 1.309003e-05	k: 15	n:1890000
NDUFS4   1890000 perm   1551 sec   (1218 perm/sec)   p_kst 7.936508e-06   p_cons 3.434534e-01   p_joint 1.481481e-05

Joint ci ratio: 7.279200e-01	ci left: 9.792546e-06	ci right 2.129877e-05	k: 28	n:1900000
Cons ci ratio: 3.932307e-03	ci left: 3.427369e-01	ci right 3.440878e-01	k: 652483	n:1900000
KS ci ratio: 9.799956e-01	ci left: 4.418631e-06	ci right 1.302113e-05	k: 15	n:1900000
NDUFS4   1900000 perm   1566 sec   (1213 perm/sec)   p_kst 7.894737e-06   p_cons 3.434121e-01   p_joint 1.473684e-05

Joint ci ratio: 7.279200e-01	ci left: 9.741276e-06	ci right 2.118726e-05	k: 28	n:1910000
Cons ci ratio: 3.922068e-03	ci left: 3.427307e-01	ci right 3.440781e-01	k: 655902	n:1910000
KS ci ratio: 9.799956e-01	ci left: 4.395497e-06	ci right 1.295296e-05	k: 15	n:1910000
NDUFS4   1910000 perm   1581 sec   (1208 perm/sec)   p_kst 7.853403e-06   p_cons 3.434042e-01   p_joint 1.465969e-05

Joint ci ratio: 7.279200e-01	ci left: 9.690540e-06	ci right 2.107691e-05	k: 28	n:1920000
Cons ci ratio: 3.911796e-03	ci left: 3.427377e-01	ci right 3.440815e-01	k: 659346	n:1920000
KS ci ratio: 9.799957e-01	ci left: 4.372603e-06	ci right 1.288550e-05	k: 15	n:1920000
NDUFS4   1920000 perm   1596 sec   (1203 perm/sec)   p_kst 7.812500e-06   p_cons 3.434094e-01   p_joint 1.458333e-05

Joint ci ratio: 7.279201e-01	ci left: 9.640330e-06	ci right 2.096770e-05	k: 28	n:1930000
Cons ci ratio: 3.901873e-03	ci left: 3.427135e-01	ci right 3.440538e-01	k: 662730	n:1930000
KS ci ratio: 9.799957e-01	ci left: 4.349947e-06	ci right 1.281873e-05	k: 15	n:1930000
NDUFS4   1930000 perm   1610 sec   (1198 perm/sec)   p_kst 7.772021e-06   p_cons 3.433834e-01   p_joint 1.450777e-05

Joint ci ratio: 7.279201e-01	ci left: 9.590638e-06	ci right 2.085962e-05	k: 28	n:1940000
Cons ci ratio: 3.891741e-03	ci left: 3.427225e-01	ci right 3.440594e-01	k: 666178	n:1940000
KS ci ratio: 9.799957e-01	ci left: 4.327525e-06	ci right 1.275266e-05	k: 15	n:1940000
NDUFS4   1940000 perm   1626 sec   (1193 perm/sec)   p_kst 7.731959e-06   p_cons 3.433907e-01   p_joint 1.443299e-05

Joint ci ratio: 7.279201e-01	ci left: 9.541455e-06	ci right 2.075265e-05	k: 28	n:1950000
Cons ci ratio: 3.881603e-03	ci left: 3.427412e-01	ci right 3.440747e-01	k: 669645	n:1950000
KS ci ratio: 9.799957e-01	ci left: 4.305332e-06	ci right 1.268726e-05	k: 15	n:1950000
NDUFS4   1950000 perm   1641 sec   (1188 perm/sec)   p_kst 7.692308e-06   p_cons 3.434077e-01   p_joint 1.435897e-05

Joint ci ratio: 7.279202e-01	ci left: 9.492774e-06	ci right 2.064677e-05	k: 28	n:1960000
Cons ci ratio: 3.871764e-03	ci left: 3.427342e-01	ci right 3.440642e-01	k: 673062	n:1960000
KS ci ratio: 9.799957e-01	ci left: 4.283366e-06	ci right 1.262253e-05	k: 15	n:1960000
NDUFS4   1960000 perm   1656 sec   (1184 perm/sec)   p_kst 7.653061e-06   p_cons 3.433990e-01   p_joint 1.428571e-05

Joint ci ratio: 7.279202e-01	ci left: 9.444587e-06	ci right 2.054196e-05	k: 28	n:1970000
Cons ci ratio: 3.861885e-03	ci left: 3.427404e-01	ci right 3.440671e-01	k: 676505	n:1970000
KS ci ratio: 9.799958e-01	ci left: 4.261623e-06	ci right 1.255846e-05	k: 15	n:1970000
NDUFS4   1970000 perm   1671 sec   (1179 perm/sec)   p_kst 7.614213e-06   p_cons 3.434036e-01   p_joint 1.421320e-05

Joint ci ratio: 7.279202e-01	ci left: 9.396887e-06	ci right 2.043822e-05	k: 28	n:1980000
Cons ci ratio: 3.851607e-03	ci left: 3.428022e-01	ci right 3.441255e-01	k: 680058	n:1980000
KS ci ratio: 9.799958e-01	ci left: 4.240100e-06	ci right 1.249503e-05	k: 15	n:1980000
NDUFS4   1980000 perm   1686 sec   (1174 perm/sec)   p_kst 7.575758e-06   p_cons 3.434636e-01   p_joint 1.414141e-05

Joint ci ratio: 7.279202e-01	ci left: 9.349666e-06	ci right 2.033551e-05	k: 28	n:1990000
Cons ci ratio: 3.842083e-03	ci left: 3.427844e-01	ci right 3.441045e-01	k: 683454	n:1990000
KS ci ratio: 9.799958e-01	ci left: 4.218793e-06	ci right 1.243224e-05	k: 15	n:1990000
NDUFS4   1990000 perm   1702 sec   (1169 perm/sec)   p_kst 7.537688e-06   p_cons 3.434442e-01   p_joint 1.407035e-05

Joint ci ratio: 7.156853e-01	ci left: 9.710898e-06	ci right 2.082435e-05	k: 29	n:2000000
Cons ci ratio: 3.832349e-03	ci left: 3.427999e-01	ci right 3.441166e-01	k: 686916	n:2000000
KS ci ratio: 9.799958e-01	ci left: 4.197699e-06	ci right 1.237008e-05	k: 15	n:2000000
NDUFS4   2000000 perm   1717 sec   (1165 perm/sec)   p_kst 7.500000e-06   p_cons 3.434580e-01   p_joint 1.450000e-05

Joint ci ratio: 7.156853e-01	ci left: 9.662585e-06	ci right 2.072075e-05	k: 29	n:2010000
Cons ci ratio: 3.822899e-03	ci left: 3.427903e-01	ci right 3.441037e-01	k: 690328	n:2010000
KS ci ratio: 9.799959e-01	ci left: 4.176815e-06	ci right 1.230854e-05	k: 15	n:2010000
NDUFS4   2010000 perm   1733 sec   (1160 perm/sec)   p_kst 7.462687e-06   p_cons 3.434468e-01   p_joint 1.442786e-05

Joint ci ratio: 7.156853e-01	ci left: 9.614751e-06	ci right 2.061817e-05	k: 29	n:2020000
Cons ci ratio: 3.813619e-03	ci left: 3.427689e-01	ci right 3.440791e-01	k: 693716	n:2020000
KS ci ratio: 9.799959e-01	ci left: 4.156138e-06	ci right 1.224760e-05	k: 15	n:2020000
NDUFS4   2020000 perm   1749 sec   (1155 perm/sec)   p_kst 7.425743e-06   p_cons 3.434238e-01   p_joint 1.435644e-05

Joint ci ratio: 7.156853e-01	ci left: 9.567387e-06	ci right 2.051660e-05	k: 29	n:2030000
Cons ci ratio: 3.804182e-03	ci left: 3.427743e-01	ci right 3.440813e-01	k: 697158	n:2030000
KS ci ratio: 9.799959e-01	ci left: 4.135664e-06	ci right 1.218727e-05	k: 15	n:2030000
NDUFS4   2030000 perm   1765 sec   (1150 perm/sec)   p_kst 7.389163e-06   p_cons 3.434276e-01   p_joint 1.428571e-05

Joint ci ratio: 7.156854e-01	ci left: 9.520488e-06	ci right 2.041603e-05	k: 29	n:2040000
Cons ci ratio: 3.794823e-03	ci left: 3.427788e-01	ci right 3.440825e-01	k: 700598	n:2040000
KS ci ratio: 9.799959e-01	ci left: 4.115391e-06	ci right 1.212753e-05	k: 15	n:2040000
NDUFS4   2040000 perm   1780 sec   (1146 perm/sec)   p_kst 7.352941e-06   p_cons 3.434304e-01   p_joint 1.421569e-05

Joint ci ratio: 7.156854e-01	ci left: 9.474047e-06	ci right 2.031644e-05	k: 29	n:2050000
Cons ci ratio: 3.785467e-03	ci left: 3.427909e-01	ci right 3.440915e-01	k: 704054	n:2050000
KS ci ratio: 9.799959e-01	ci left: 4.095316e-06	ci right 1.206837e-05	k: 15	n:2050000
NDUFS4   2050000 perm   1796 sec   (1141 perm/sec)   p_kst 7.317073e-06   p_cons 3.434410e-01   p_joint 1.414634e-05

Joint ci ratio: 7.156854e-01	ci left: 9.428056e-06	ci right 2.021782e-05	k: 29	n:2060000
Cons ci ratio: 3.776221e-03	ci left: 3.427981e-01	ci right 3.440955e-01	k: 707500	n:2060000
KS ci ratio: 9.799960e-01	ci left: 4.075436e-06	ci right 1.200979e-05	k: 15	n:2060000
NDUFS4   2060000 perm   1813 sec   (1136 perm/sec)   p_kst 7.281553e-06   p_cons 3.434466e-01   p_joint 1.407767e-05

Joint ci ratio: 7.156854e-01	ci left: 9.382510e-06	ci right 2.012015e-05	k: 29	n:2070000
Cons ci ratio: 3.766974e-03	ci left: 3.428135e-01	ci right 3.441077e-01	k: 710963	n:2070000
KS ci ratio: 9.799960e-01	ci left: 4.055748e-06	ci right 1.195177e-05	k: 15	n:2070000
NDUFS4   2070000 perm   1829 sec   (1132 perm/sec)   p_kst 7.246377e-06   p_cons 3.434604e-01   p_joint 1.400966e-05

Joint ci ratio: 7.156855e-01	ci left: 9.337402e-06	ci right 2.002342e-05	k: 29	n:2080000
Cons ci ratio: 3.758086e-03	ci left: 3.427936e-01	ci right 3.440847e-01	k: 714353	n:2080000
KS ci ratio: 9.799960e-01	ci left: 4.036249e-06	ci right 1.189431e-05	k: 15	n:2080000
NDUFS4   2080000 perm   1846 sec   (1127 perm/sec)   p_kst 7.211538e-06   p_cons 3.434389e-01   p_joint 1.394231e-05

Joint ci ratio: 7.156855e-01	ci left: 9.292725e-06	ci right 1.992761e-05	k: 29	n:2090000
Cons ci ratio: 3.748923e-03	ci left: 3.428146e-01	ci right 3.441026e-01	k: 717828	n:2090000
KS ci ratio: 9.799960e-01	ci left: 4.016937e-06	ci right 1.183740e-05	k: 15	n:2090000
NDUFS4   2090000 perm   1862 sec   (1123 perm/sec)   p_kst 7.177033e-06   p_cons 3.434584e-01   p_joint 1.387560e-05

Joint ci ratio: 7.156855e-01	ci left: 9.248474e-06	ci right 1.983272e-05	k: 29	n:2100000
Cons ci ratio: 3.739724e-03	ci left: 3.428477e-01	ci right 3.441327e-01	k: 721329	n:2100000
KS ci ratio: 9.799960e-01	ci left: 3.997808e-06	ci right 1.178103e-05	k: 15	n:2100000
NDUFS4   2100000 perm   1878 sec   (1118 perm/sec)   p_kst 7.142857e-06   p_cons 3.434900e-01   p_joint 1.380952e-05

Joint ci ratio: 7.156856e-01	ci left: 9.204642e-06	ci right 1.973873e-05	k: 29	n:2110000
Cons ci ratio: 3.730848e-03	ci left: 3.428498e-01	ci right 3.441317e-01	k: 724765	n:2110000
KS ci ratio: 9.799961e-01	ci left: 3.978861e-06	ci right 1.172520e-05	k: 15	n:2110000
NDUFS4   2110000 perm   1894 sec   (1114 perm/sec)   p_kst 7.109005e-06   p_cons 3.434905e-01   p_joint 1.374408e-05

Joint ci ratio: 7.156856e-01	ci left: 9.161224e-06	ci right 1.964562e-05	k: 29	n:2120000
Cons ci ratio: 3.722271e-03	ci left: 3.428230e-01	ci right 3.441019e-01	k: 728140	n:2120000
KS ci ratio: 9.799961e-01	ci left: 3.960093e-06	ci right 1.166989e-05	k: 15	n:2120000
NDUFS4   2120000 perm   1911 sec   (1110 perm/sec)   p_kst 7.075472e-06   p_cons 3.434623e-01   p_joint 1.367925e-05

Joint ci ratio: 7.156856e-01	ci left: 9.118213e-06	ci right 1.955339e-05	k: 29	n:2130000
Cons ci ratio: 3.713491e-03	ci left: 3.428285e-01	ci right 3.441044e-01	k: 731583	n:2130000
KS ci ratio: 9.799961e-01	ci left: 3.941501e-06	ci right 1.161510e-05	k: 15	n:2130000
NDUFS4   2130000 perm   1927 sec   (1105 perm/sec)   p_kst 7.042254e-06   p_cons 3.434662e-01   p_joint 1.361502e-05

Joint ci ratio: 7.156856e-01	ci left: 9.075605e-06	ci right 1.946202e-05	k: 29	n:2140000
Cons ci ratio: 3.704949e-03	ci left: 3.428124e-01	ci right 3.440853e-01	k: 734980	n:2140000
KS ci ratio: 9.799961e-01	ci left: 3.923083e-06	ci right 1.156082e-05	k: 15	n:2140000
NDUFS4   2140000 perm   1944 sec   (1101 perm/sec)   p_kst 7.009346e-06   p_cons 3.434486e-01   p_joint 1.355140e-05

Joint ci ratio: 7.040475e-01	ci left: 9.414379e-06	ci right 1.991941e-05	k: 30	n:2150000
Cons ci ratio: 3.696130e-03	ci left: 3.428373e-01	ci right 3.441073e-01	k: 738465	n:2150000
KS ci ratio: 9.799961e-01	ci left: 3.904836e-06	ci right 1.150705e-05	k: 15	n:2150000
NDUFS4   2150000 perm   1961 sec   (1096 perm/sec)   p_kst 6.976744e-06   p_cons 3.434721e-01   p_joint 1.395349e-05

Joint ci ratio: 7.040476e-01	ci left: 9.370794e-06	ci right 1.982719e-05	k: 30	n:2160000
Cons ci ratio: 3.687934e-03	ci left: 3.427936e-01	ci right 3.440605e-01	k: 741802	n:2160000
KS ci ratio: 9.799961e-01	ci left: 3.886758e-06	ci right 1.145378e-05	k: 15	n:2160000
NDUFS4   2160000 perm   1978 sec   (1092 perm/sec)   p_kst 6.944444e-06   p_cons 3.434269e-01   p_joint 1.388889e-05

Joint ci ratio: 7.040476e-01	ci left: 9.327611e-06	ci right 1.973582e-05	k: 30	n:2170000
Cons ci ratio: 3.679327e-03	ci left: 3.428073e-01	ci right 3.440714e-01	k: 745263	n:2170000
KS ci ratio: 9.799962e-01	ci left: 3.868847e-06	ci right 1.140100e-05	k: 15	n:2170000
NDUFS4   2170000 perm   1995 sec   (1088 perm/sec)   p_kst 6.912442e-06   p_cons 3.434392e-01   p_joint 1.382488e-05

Joint ci ratio: 7.040476e-01	ci left: 9.284823e-06	ci right 1.964529e-05	k: 30	n:2180000
Cons ci ratio: 3.670921e-03	ci left: 3.428036e-01	ci right 3.440647e-01	k: 748686	n:2180000
KS ci ratio: 9.799962e-01	ci left: 3.851100e-06	ci right 1.134870e-05	k: 15	n:2180000
NDUFS4   2180000 perm   2012 sec   (1084 perm/sec)   p_kst 6.880734e-06   p_cons 3.434339e-01   p_joint 1.376147e-05

Joint ci ratio: 6.929594e-01	ci left: 9.617826e-06	ci right 2.009219e-05	k: 31	n:2190000
Cons ci ratio: 3.662668e-03	ci left: 3.427880e-01	ci right 3.440462e-01	k: 752083	n:2190000
KS ci ratio: 9.799962e-01	ci left: 3.833515e-06	ci right 1.129688e-05	k: 15	n:2190000
NDUFS4   2190000 perm   2029 sec   (1079 perm/sec)   p_kst 6.849315e-06   p_cons 3.434169e-01   p_joint 1.415525e-05

Joint ci ratio: 6.929594e-01	ci left: 9.574109e-06	ci right 2.000086e-05	k: 31	n:2200000
Cons ci ratio: 3.654350e-03	ci left: 3.427875e-01	ci right 3.440429e-01	k: 755513	n:2200000
KS ci ratio: 9.799962e-01	ci left: 3.816089e-06	ci right 1.124553e-05	k: 15	n:2200000
NDUFS4   2200000 perm   2046 sec   (1075 perm/sec)   p_kst 6.818182e-06   p_cons 3.434150e-01   p_joint 1.409091e-05

Joint ci ratio: 6.929595e-01	ci left: 9.530787e-06	ci right 1.991036e-05	k: 31	n:2210000
Cons ci ratio: 3.645942e-03	ci left: 3.428051e-01	ci right 3.440577e-01	k: 758983	n:2210000
KS ci ratio: 9.799962e-01	ci left: 3.798822e-06	ci right 1.119464e-05	k: 15	n:2210000
NDUFS4   2210000 perm   2064 sec   (1071 perm/sec)   p_kst 6.787330e-06   p_cons 3.434312e-01   p_joint 1.402715e-05

Joint ci ratio: 6.929595e-01	ci left: 9.487855e-06	ci right 1.982067e-05	k: 31	n:2220000
Cons ci ratio: 3.637678e-03	ci left: 3.428118e-01	ci right 3.440616e-01	k: 762429	n:2220000
KS ci ratio: 9.799962e-01	ci left: 3.781710e-06	ci right 1.114422e-05	k: 15	n:2220000
NDUFS4   2220000 perm   2081 sec   (1067 perm/sec)   p_kst 6.756757e-06   p_cons 3.434365e-01   p_joint 1.396396e-05

Joint ci ratio: 6.929595e-01	ci left: 9.445309e-06	ci right 1.973179e-05	k: 31	n:2230000
Cons ci ratio: 3.629525e-03	ci left: 3.428117e-01	ci right 3.440586e-01	k: 765860	n:2230000
KS ci ratio: 9.799963e-01	ci left: 3.764752e-06	ci right 1.109424e-05	k: 15	n:2230000
NDUFS4   2230000 perm   2098 sec   (1063 perm/sec)   p_kst 6.726457e-06   p_cons 3.434350e-01   p_joint 1.390135e-05

Joint ci ratio: 6.929595e-01	ci left: 9.403142e-06	ci right 1.964370e-05	k: 31	n:2240000
Cons ci ratio: 3.621842e-03	ci left: 3.427598e-01	ci right 3.440039e-01	k: 769175	n:2240000
KS ci ratio: 9.799963e-01	ci left: 3.747945e-06	ci right 1.104472e-05	k: 15	n:2240000
NDUFS4   2240000 perm   2116 sec   (1059 perm/sec)   p_kst 6.696429e-06   p_cons 3.433817e-01   p_joint 1.383929e-05

Joint ci ratio: 6.823793e-01	ci left: 9.728009e-06	ci right 2.007748e-05	k: 32	n:2250000
Cons ci ratio: 3.613838e-03	ci left: 3.427547e-01	ci right 3.439960e-01	k: 772594	n:2250000
KS ci ratio: 9.799963e-01	ci left: 3.731287e-06	ci right 1.099563e-05	k: 15	n:2250000
NDUFS4   2250000 perm   2133 sec   (1055 perm/sec)   p_kst 6.666667e-06   p_cons 3.433751e-01   p_joint 1.422222e-05

Joint ci ratio: 6.722692e-01	ci left: 1.005121e-05	ci right 2.050625e-05	k: 33	n:2260000
Cons ci ratio: 3.606052e-03	ci left: 3.427287e-01	ci right 3.439673e-01	k: 775966	n:2260000
KS ci ratio: 9.799963e-01	ci left: 3.714777e-06	ci right 1.094698e-05	k: 15	n:2260000
NDUFS4   2260000 perm   2151 sec   (1051 perm/sec)   p_kst 6.637168e-06   p_cons 3.433478e-01   p_joint 1.460177e-05

Joint ci ratio: 6.722693e-01	ci left: 1.000693e-05	ci right 2.041592e-05	k: 33	n:2270000
Cons ci ratio: 3.598317e-03	ci left: 3.427030e-01	ci right 3.439388e-01	k: 779338	n:2270000
KS ci ratio: 9.799963e-01	ci left: 3.698413e-06	ci right 1.089875e-05	k: 15	n:2270000
NDUFS4   2270000 perm   2168 sec   (1047 perm/sec)   p_kst 6.607930e-06   p_cons 3.433207e-01   p_joint 1.453744e-05

Joint ci ratio: 6.722693e-01	ci left: 9.963039e-06	ci right 2.032637e-05	k: 33	n:2280000
Cons ci ratio: 3.590254e-03	ci left: 3.427249e-01	ci right 3.439580e-01	k: 782818	n:2280000
KS ci ratio: 9.799963e-01	ci left: 3.682191e-06	ci right 1.085095e-05	k: 15	n:2280000
NDUFS4   2280000 perm   2185 sec   (1043 perm/sec)   p_kst 6.578947e-06   p_cons 3.433412e-01   p_joint 1.447368e-05

Joint ci ratio: 6.722693e-01	ci left: 9.919532e-06	ci right 2.023761e-05	k: 33	n:2290000
Cons ci ratio: 3.582328e-03	ci left: 3.427361e-01	ci right 3.439665e-01	k: 786274	n:2290000
KS ci ratio: 9.799964e-01	ci left: 3.666112e-06	ci right 1.080357e-05	k: 15	n:2290000
NDUFS4   2290000 perm   2203 sec   (1040 perm/sec)   p_kst 6.550218e-06   p_cons 3.433511e-01   p_joint 1.441048e-05

Joint ci ratio: 6.722693e-01	ci left: 9.876403e-06	ci right 2.014962e-05	k: 33	n:2300000
Cons ci ratio: 3.574261e-03	ci left: 3.427715e-01	ci right 3.439993e-01	k: 789786	n:2300000
KS ci ratio: 9.799964e-01	ci left: 3.650172e-06	ci right 1.075659e-05	k: 15	n:2300000
NDUFS4   2300000 perm   2221 sec   (1036 perm/sec)   p_kst 6.521739e-06   p_cons 3.433852e-01   p_joint 1.434783e-05

Joint ci ratio: 6.722694e-01	ci left: 9.833648e-06	ci right 2.006240e-05	k: 33	n:2310000
Cons ci ratio: 3.566430e-03	ci left: 3.427837e-01	ci right 3.440089e-01	k: 793245	n:2310000
KS ci ratio: 9.799964e-01	ci left: 3.634371e-06	ci right 1.071003e-05	k: 15	n:2310000
NDUFS4   2310000 perm   2239 sec   (1032 perm/sec)   p_kst 6.493506e-06   p_cons 3.433961e-01   p_joint 1.428571e-05

Joint ci ratio: 6.722694e-01	ci left: 9.791262e-06	ci right 1.997592e-05	k: 33	n:2320000
Cons ci ratio: 3.558783e-03	ci left: 3.427791e-01	ci right 3.440015e-01	k: 796665	n:2320000
KS ci ratio: 9.799964e-01	ci left: 3.618705e-06	ci right 1.066387e-05	k: 15	n:2320000
NDUFS4   2320000 perm   2256 sec   (1028 perm/sec)   p_kst 6.465517e-06   p_cons 3.433901e-01   p_joint 1.422414e-05

Joint ci ratio: 6.625958e-01	ci left: 1.010559e-05	ci right 2.039118e-05	k: 34	n:2330000
Cons ci ratio: 3.551327e-03	ci left: 3.427564e-01	ci right 3.439762e-01	k: 800043	n:2330000
KS ci ratio: 9.507360e-01	ci left: 3.925062e-06	ci right 1.115148e-05	k: 16	n:2330000
NDUFS4   2330000 perm   2274 sec   (1025 perm/sec)   p_kst 6.866953e-06   p_cons 3.433661e-01   p_joint 1.459227e-05

Joint ci ratio: 6.625958e-01	ci left: 1.006241e-05	ci right 2.030404e-05	k: 34	n:2340000
Cons ci ratio: 3.543760e-03	ci left: 3.427540e-01	ci right 3.439712e-01	k: 803468	n:2340000
KS ci ratio: 9.507360e-01	ci left: 3.908288e-06	ci right 1.110382e-05	k: 16	n:2340000
NDUFS4   2340000 perm   2292 sec   (1021 perm/sec)   p_kst 6.837607e-06   p_cons 3.433624e-01   p_joint 1.452991e-05

Joint ci ratio: 6.625959e-01	ci left: 1.001959e-05	ci right 2.021764e-05	k: 34	n:2350000
Cons ci ratio: 3.536494e-03	ci left: 3.427193e-01	ci right 3.439339e-01	k: 806817	n:2350000
KS ci ratio: 9.507360e-01	ci left: 3.891657e-06	ci right 1.105657e-05	k: 16	n:2350000
NDUFS4   2350000 perm   2310 sec   (1017 perm/sec)   p_kst 6.808511e-06   p_cons 3.433264e-01   p_joint 1.446809e-05

Joint ci ratio: 9.507360e-01	ci left: 3.875167e-06	ci right 1.100972e-05	k: 16	n:2360000
Cons ci ratio: 3.528908e-03	ci left: 3.427315e-01	ci right 3.439435e-01	k: 810276	n:2360000
KS ci ratio: 9.507360e-01	ci left: 3.875167e-06	ci right 1.100972e-05	k: 16	n:2360000
NDUFS4   2360000 perm   2328 sec   (1014 perm/sec)   p_kst 6.779661e-06   p_cons 3.433373e-01   p_joint 6.779661e-06

Joint ci ratio: 9.507360e-01	ci left: 3.858816e-06	ci right 1.096327e-05	k: 16	n:2370000
Cons ci ratio: 3.521529e-03	ci left: 3.427233e-01	ci right 3.439328e-01	k: 813687	n:2370000
KS ci ratio: 9.507360e-01	ci left: 3.858816e-06	ci right 1.096327e-05	k: 16	n:2370000
NDUFS4   2370000 perm   2347 sec   (1010 perm/sec)   p_kst 6.751055e-06   p_cons 3.433278e-01   p_joint 6.751055e-06

Joint ci ratio: 9.507361e-01	ci left: 3.842602e-06	ci right 1.091720e-05	k: 16	n:2380000
Cons ci ratio: 3.514180e-03	ci left: 3.427173e-01	ci right 3.439242e-01	k: 817103	n:2380000
KS ci ratio: 9.507361e-01	ci left: 3.842602e-06	ci right 1.091720e-05	k: 16	n:2380000
NDUFS4   2380000 perm   2365 sec   (1006 perm/sec)   p_kst 6.722689e-06   p_cons 3.433206e-01   p_joint 6.722689e-06

Joint ci ratio: 9.507361e-01	ci left: 3.826525e-06	ci right 1.087152e-05	k: 16	n:2390000
Cons ci ratio: 3.506954e-03	ci left: 3.427014e-01	ci right 3.439057e-01	k: 820495	n:2390000
KS ci ratio: 9.507361e-01	ci left: 3.826525e-06	ci right 1.087152e-05	k: 16	n:2390000
NDUFS4   2390000 perm   2383 sec   (1003 perm/sec)   p_kst 6.694561e-06   p_cons 3.433033e-01   p_joint 6.694561e-06

Joint ci ratio: 9.507361e-01	ci left: 3.810581e-06	ci right 1.082623e-05	k: 16	n:2400000
Cons ci ratio: 3.499599e-03	ci left: 3.427080e-01	ci right 3.439099e-01	k: 823941	n:2400000
KS ci ratio: 9.507361e-01	ci left: 3.810581e-06	ci right 1.082623e-05	k: 16	n:2400000
NDUFS4   2400000 perm   2402 sec   (999 perm/sec)   p_kst 6.666667e-06   p_cons 3.433087e-01   p_joint 6.666667e-06

Joint ci ratio: 9.239492e-01	ci left: 4.109186e-06	ci right 1.129402e-05	k: 17	n:2410000
Cons ci ratio: 3.492376e-03	ci left: 3.427034e-01	ci right 3.439028e-01	k: 827360	n:2410000
KS ci ratio: 9.239492e-01	ci left: 4.109186e-06	ci right 1.129402e-05	k: 17	n:2410000
NDUFS4   2410000 perm   2420 sec   (996 perm/sec)   p_kst 7.053942e-06   p_cons 3.433029e-01   p_joint 7.053942e-06

Joint ci ratio: 9.239492e-01	ci left: 4.092206e-06	ci right 1.124735e-05	k: 17	n:2420000
Cons ci ratio: 3.485105e-03	ci left: 3.427108e-01	ci right 3.439077e-01	k: 830808	n:2420000
KS ci ratio: 9.239492e-01	ci left: 4.092206e-06	ci right 1.124735e-05	k: 17	n:2420000
NDUFS4   2420000 perm   2439 sec   (992 perm/sec)   p_kst 7.024793e-06   p_cons 3.433091e-01   p_joint 7.024793e-06

Joint ci ratio: 9.239492e-01	ci left: 4.075366e-06	ci right 1.120107e-05	k: 17	n:2430000
Cons ci ratio: 3.477806e-03	ci left: 3.427277e-01	ci right 3.439221e-01	k: 834279	n:2430000
KS ci ratio: 9.239492e-01	ci left: 4.075366e-06	ci right 1.120107e-05	k: 17	n:2430000
NDUFS4   2430000 perm   2457 sec   (989 perm/sec)   p_kst 6.995885e-06   p_cons 3.433247e-01   p_joint 6.995885e-06

Joint ci ratio: 9.239493e-01	ci left: 4.058663e-06	ci right 1.115516e-05	k: 17	n:2440000
Cons ci ratio: 3.470427e-03	ci left: 3.427608e-01	ci right 3.439527e-01	k: 837790	n:2440000
KS ci ratio: 9.239493e-01	ci left: 4.058663e-06	ci right 1.115516e-05	k: 17	n:2440000
NDUFS4   2440000 perm   2475 sec   (986 perm/sec)   p_kst 6.967213e-06   p_cons 3.433566e-01   p_joint 6.967213e-06

Joint ci ratio: 9.239493e-01	ci left: 4.042097e-06	ci right 1.110963e-05	k: 17	n:2450000
Cons ci ratio: 3.463351e-03	ci left: 3.427601e-01	ci right 3.439497e-01	k: 841219	n:2450000
KS ci ratio: 9.239493e-01	ci left: 4.042097e-06	ci right 1.110963e-05	k: 17	n:2450000
NDUFS4   2450000 perm   2494 sec   (982 perm/sec)   p_kst 6.938776e-06   p_cons 3.433547e-01   p_joint 6.938776e-06

Joint ci ratio: 8.993060e-01	ci left: 4.336567e-06	ci right 1.156411e-05	k: 18	n:2460000
Cons ci ratio: 3.455995e-03	ci left: 3.428017e-01	ci right 3.439889e-01	k: 844752	n:2460000
KS ci ratio: 8.993060e-01	ci left: 4.336567e-06	ci right 1.156411e-05	k: 18	n:2460000
NDUFS4   2460000 perm   2512 sec   (979 perm/sec)   p_kst 7.317073e-06   p_cons 3.433951e-01   p_joint 7.317073e-06

Joint ci ratio: 8.993060e-01	ci left: 4.319010e-06	ci right 1.151729e-05	k: 18	n:2470000
Cons ci ratio: 3.449187e-03	ci left: 3.427775e-01	ci right 3.439622e-01	k: 848123	n:2470000
KS ci ratio: 8.993060e-01	ci left: 4.319010e-06	ci right 1.151729e-05	k: 18	n:2470000
NDUFS4   2470000 perm   2531 sec   (976 perm/sec)   p_kst 7.287449e-06   p_cons 3.433696e-01   p_joint 7.287449e-06

Joint ci ratio: 8.993061e-01	ci left: 4.301595e-06	ci right 1.147085e-05	k: 18	n:2480000
Cons ci ratio: 3.442253e-03	ci left: 3.427751e-01	ci right 3.439575e-01	k: 851548	n:2480000
KS ci ratio: 8.993061e-01	ci left: 4.301595e-06	ci right 1.147085e-05	k: 18	n:2480000
NDUFS4   2480000 perm   2550 sec   (972 perm/sec)   p_kst 7.258065e-06   p_cons 3.433661e-01   p_joint 7.258065e-06

Joint ci ratio: 8.993061e-01	ci left: 4.284319e-06	ci right 1.142478e-05	k: 18	n:2490000
Cons ci ratio: 3.435293e-03	ci left: 3.427817e-01	ci right 3.439616e-01	k: 854995	n:2490000
KS ci ratio: 8.993061e-01	ci left: 4.284319e-06	ci right 1.142478e-05	k: 18	n:2490000
NDUFS4   2490000 perm   2569 sec   (969 perm/sec)   p_kst 7.228916e-06   p_cons 3.433715e-01   p_joint 7.228916e-06

Joint ci ratio: 8.993061e-01	ci left: 4.267182e-06	ci right 1.137908e-05	k: 18	n:2500000
Cons ci ratio: 3.428460e-03	ci left: 3.427770e-01	ci right 3.439546e-01	k: 858414	n:2500000
KS ci ratio: 8.993061e-01	ci left: 4.267182e-06	ci right 1.137908e-05	k: 18	n:2500000
NDUFS4   2500000 perm   2588 sec   (966 perm/sec)   p_kst 7.200000e-06   p_cons 3.433656e-01   p_joint 7.200000e-06

Joint ci ratio: 8.993061e-01	ci left: 4.250181e-06	ci right 1.133375e-05	k: 18	n:2510000
Cons ci ratio: 3.421647e-03	ci left: 3.427751e-01	ci right 3.439504e-01	k: 861840	n:2510000
KS ci ratio: 8.993061e-01	ci left: 4.250181e-06	ci right 1.133375e-05	k: 18	n:2510000
NDUFS4   2510000 perm   2607 sec   (963 perm/sec)   p_kst 7.171315e-06   p_cons 3.433625e-01   p_joint 7.171315e-06

Joint ci ratio: 8.765350e-01	ci left: 4.539387e-06	ci right 1.177412e-05	k: 19	n:2520000
Cons ci ratio: 3.414775e-03	ci left: 3.427863e-01	ci right 3.439593e-01	k: 865299	n:2520000
KS ci ratio: 8.765350e-01	ci left: 4.539387e-06	ci right 1.177412e-05	k: 19	n:2520000
NDUFS4   2520000 perm   2626 sec   (960 perm/sec)   p_kst 7.539683e-06   p_cons 3.433726e-01   p_joint 7.539683e-06

Joint ci ratio: 8.765350e-01	ci left: 4.521445e-06	ci right 1.172759e-05	k: 19	n:2530000
Cons ci ratio: 3.407878e-03	ci left: 3.428062e-01	ci right 3.439768e-01	k: 868780	n:2530000
KS ci ratio: 8.765350e-01	ci left: 4.521445e-06	ci right 1.172759e-05	k: 19	n:2530000
NDUFS4   2530000 perm   2645 sec   (956 perm/sec)   p_kst 7.509881e-06   p_cons 3.433913e-01   p_joint 7.509881e-06

Joint ci ratio: 8.765350e-01	ci left: 4.503644e-06	ci right 1.168141e-05	k: 19	n:2540000
Cons ci ratio: 3.401092e-03	ci left: 3.428168e-01	ci right 3.439851e-01	k: 872238	n:2540000
KS ci ratio: 8.765350e-01	ci left: 4.503644e-06	ci right 1.168141e-05	k: 19	n:2540000
NDUFS4   2540000 perm   2665 sec   (953 perm/sec)   p_kst 7.480315e-06   p_cons 3.434008e-01   p_joint 7.480315e-06

Joint ci ratio: 8.765350e-01	ci left: 4.485983e-06	ci right 1.163560e-05	k: 19	n:2550000
Cons ci ratio: 3.394328e-03	ci left: 3.428297e-01	ci right 3.439957e-01	k: 875702	n:2550000
KS ci ratio: 8.765350e-01	ci left: 4.485983e-06	ci right 1.163560e-05	k: 19	n:2550000
NDUFS4   2550000 perm   2684 sec   (950 perm/sec)   p_kst 7.450980e-06   p_cons 3.434125e-01   p_joint 7.450980e-06

Joint ci ratio: 8.765351e-01	ci left: 4.468459e-06	ci right 1.159015e-05	k: 19	n:2560000
Cons ci ratio: 3.387411e-03	ci left: 3.428683e-01	ci right 3.440321e-01	k: 879232	n:2560000
KS ci ratio: 8.765351e-01	ci left: 4.468459e-06	ci right 1.159015e-05	k: 19	n:2560000
NDUFS4   2560000 perm   2703 sec   (947 perm/sec)   p_kst 7.421875e-06   p_cons 3.434500e-01   p_joint 7.421875e-06

Joint ci ratio: 8.765351e-01	ci left: 4.451072e-06	ci right 1.154506e-05	k: 19	n:2570000
Cons ci ratio: 3.380751e-03	ci left: 3.428778e-01	ci right 3.440393e-01	k: 882688	n:2570000
KS ci ratio: 8.765351e-01	ci left: 4.451072e-06	ci right 1.154506e-05	k: 19	n:2570000
NDUFS4   2570000 perm   2723 sec   (944 perm/sec)   p_kst 7.392996e-06   p_cons 3.434584e-01   p_joint 7.392996e-06

Joint ci ratio: 8.765351e-01	ci left: 4.433820e-06	ci right 1.150031e-05	k: 19	n:2580000
Cons ci ratio: 3.374241e-03	ci left: 3.428725e-01	ci right 3.440317e-01	k: 886106	n:2580000
KS ci ratio: 8.765351e-01	ci left: 4.433820e-06	ci right 1.150031e-05	k: 19	n:2580000
NDUFS4   2580000 perm   2743 sec   (941 perm/sec)   p_kst 7.364341e-06   p_cons 3.434519e-01   p_joint 7.364341e-06

Joint ci ratio: 8.765351e-01	ci left: 4.416701e-06	ci right 1.145590e-05	k: 19	n:2590000
Cons ci ratio: 3.368028e-03	ci left: 3.428325e-01	ci right 3.439895e-01	k: 889434	n:2590000
KS ci ratio: 8.765351e-01	ci left: 4.416701e-06	ci right 1.145590e-05	k: 19	n:2590000
NDUFS4   2590000 perm   2763 sec   (937 perm/sec)   p_kst 7.335907e-06   p_cons 3.434108e-01   p_joint 7.335907e-06

Joint ci ratio: 8.765351e-01	ci left: 4.399714e-06	ci right 1.141184e-05	k: 19	n:2600000
Cons ci ratio: 3.361594e-03	ci left: 3.428270e-01	ci right 3.439818e-01	k: 892851	n:2600000
KS ci ratio: 8.765351e-01	ci left: 4.399714e-06	ci right 1.141184e-05	k: 19	n:2600000
NDUFS4   2600000 perm   2783 sec   (934 perm/sec)   p_kst 7.307692e-06   p_cons 3.434042e-01   p_joint 7.307692e-06

Joint ci ratio: 8.765351e-01	ci left: 4.382857e-06	ci right 1.136812e-05	k: 19	n:2610000
Cons ci ratio: 3.355114e-03	ci left: 3.428327e-01	ci right 3.439853e-01	k: 896297	n:2610000
KS ci ratio: 8.765351e-01	ci left: 4.382857e-06	ci right 1.136812e-05	k: 19	n:2610000
NDUFS4   2610000 perm   2802 sec   (931 perm/sec)   p_kst 7.279693e-06   p_cons 3.434088e-01   p_joint 7.279693e-06

Joint ci ratio: 8.765351e-01	ci left: 4.366128e-06	ci right 1.132473e-05	k: 19	n:2620000
Cons ci ratio: 3.348583e-03	ci left: 3.428502e-01	ci right 3.440005e-01	k: 899774	n:2620000
KS ci ratio: 8.765351e-01	ci left: 4.366128e-06	ci right 1.132473e-05	k: 19	n:2620000
NDUFS4   2620000 perm   2822 sec   (928 perm/sec)   p_kst 7.251908e-06   p_cons 3.434252e-01   p_joint 7.251908e-06

Joint ci ratio: 8.765351e-01	ci left: 4.349527e-06	ci right 1.128167e-05	k: 19	n:2630000
Cons ci ratio: 3.342384e-03	ci left: 3.428280e-01	ci right 3.439761e-01	k: 903147	n:2630000
KS ci ratio: 8.765351e-01	ci left: 4.349527e-06	ci right 1.128167e-05	k: 19	n:2630000
NDUFS4   2630000 perm   2842 sec   (925 perm/sec)   p_kst 7.224335e-06   p_cons 3.434019e-01   p_joint 7.224335e-06

Joint ci ratio: 8.554106e-01	ci left: 4.627475e-06	ci right 1.170012e-05	k: 20	n:2640000
Cons ci ratio: 3.336151e-03	ci left: 3.428151e-01	ci right 3.439610e-01	k: 906544	n:2640000
KS ci ratio: 8.554106e-01	ci left: 4.627475e-06	ci right 1.170012e-05	k: 20	n:2640000
NDUFS4   2640000 perm   2862 sec   (922 perm/sec)   p_kst 7.575758e-06   p_cons 3.433879e-01   p_joint 7.575758e-06

Joint ci ratio: 8.554106e-01	ci left: 4.610013e-06	ci right 1.165597e-05	k: 20	n:2650000
Cons ci ratio: 3.329703e-03	ci left: 3.428362e-01	ci right 3.439800e-01	k: 910031	n:2650000
KS ci ratio: 8.554106e-01	ci left: 4.610013e-06	ci right 1.165597e-05	k: 20	n:2650000
NDUFS4   2650000 perm   2882 sec   (920 perm/sec)   p_kst 7.547170e-06   p_cons 3.434079e-01   p_joint 7.547170e-06

Joint ci ratio: 8.554106e-01	ci left: 4.592682e-06	ci right 1.161215e-05	k: 20	n:2660000
Cons ci ratio: 3.323205e-03	ci left: 3.428688e-01	ci right 3.440105e-01	k: 913549	n:2660000
KS ci ratio: 8.554106e-01	ci left: 4.592682e-06	ci right 1.161215e-05	k: 20	n:2660000
NDUFS4   2660000 perm   2902 sec   (917 perm/sec)   p_kst 7.518797e-06   p_cons 3.434395e-01   p_joint 7.518797e-06

Joint ci ratio: 8.554106e-01	ci left: 4.575481e-06	ci right 1.156866e-05	k: 20	n:2670000
Cons ci ratio: 3.316710e-03	ci left: 3.429060e-01	ci right 3.440456e-01	k: 917080	n:2670000
KS ci ratio: 8.554106e-01	ci left: 4.575481e-06	ci right 1.156866e-05	k: 20	n:2670000
NDUFS4   2670000 perm   2923 sec   (913 perm/sec)   p_kst 7.490637e-06   p_cons 3.434757e-01   p_joint 7.490637e-06

Joint ci ratio: 8.554106e-01	ci left: 4.558409e-06	ci right 1.152549e-05	k: 20	n:2680000
Cons ci ratio: 3.310601e-03	ci left: 3.428956e-01	ci right 3.440331e-01	k: 920484	n:2680000
KS ci ratio: 8.554106e-01	ci left: 4.558409e-06	ci right 1.152549e-05	k: 20	n:2680000
NDUFS4   2680000 perm   2944 sec   (910 perm/sec)   p_kst 7.462687e-06   p_cons 3.434642e-01   p_joint 7.462687e-06

Joint ci ratio: 8.554106e-01	ci left: 4.541463e-06	ci right 1.148265e-05	k: 20	n:2690000
Cons ci ratio: 3.304481e-03	ci left: 3.428913e-01	ci right 3.440266e-01	k: 923904	n:2690000
KS ci ratio: 8.554106e-01	ci left: 4.541463e-06	ci right 1.148265e-05	k: 20	n:2690000
NDUFS4   2690000 perm   2964 sec   (907 perm/sec)   p_kst 7.434944e-06   p_cons 3.434587e-01   p_joint 7.434944e-06

Joint ci ratio: 8.554106e-01	ci left: 4.524643e-06	ci right 1.144012e-05	k: 20	n:2700000
Cons ci ratio: 3.298193e-03	ci left: 3.429147e-01	ci right 3.440479e-01	k: 927399	n:2700000
KS ci ratio: 8.554106e-01	ci left: 4.524643e-06	ci right 1.144012e-05	k: 20	n:2700000
NDUFS4   2700000 perm   2985 sec   (905 perm/sec)   p_kst 7.407407e-06   p_cons 3.434811e-01   p_joint 7.407407e-06

Joint ci ratio: 8.554107e-01	ci left: 4.507946e-06	ci right 1.139790e-05	k: 20	n:2710000
Cons ci ratio: 3.292158e-03	ci left: 3.429080e-01	ci right 3.440392e-01	k: 930813	n:2710000
KS ci ratio: 8.554107e-01	ci left: 4.507946e-06	ci right 1.139790e-05	k: 20	n:2710000
NDUFS4   2710000 perm   3006 sec   (902 perm/sec)   p_kst 7.380074e-06   p_cons 3.434734e-01   p_joint 7.380074e-06

Joint ci ratio: 8.554107e-01	ci left: 4.491373e-06	ci right 1.135600e-05	k: 20	n:2720000
Cons ci ratio: 3.286081e-03	ci left: 3.429118e-01	ci right 3.440408e-01	k: 934255	n:2720000
KS ci ratio: 8.554107e-01	ci left: 4.491373e-06	ci right 1.135600e-05	k: 20	n:2720000
NDUFS4   2720000 perm   3027 sec   (899 perm/sec)   p_kst 7.352941e-06   p_cons 3.434761e-01   p_joint 7.352941e-06

Joint ci ratio: 8.554107e-01	ci left: 4.474921e-06	ci right 1.131440e-05	k: 20	n:2730000
Cons ci ratio: 3.279966e-03	ci left: 3.429253e-01	ci right 3.440523e-01	k: 937724	n:2730000
KS ci ratio: 8.554107e-01	ci left: 4.474921e-06	ci right 1.131440e-05	k: 20	n:2730000
NDUFS4   2730000 perm   3048 sec   (896 perm/sec)   p_kst 7.326007e-06   p_cons 3.434886e-01   p_joint 7.326007e-06

Joint ci ratio: 8.357433e-01	ci left: 4.744287e-06	ci right 1.171557e-05	k: 21	n:2740000
Cons ci ratio: 3.274203e-03	ci left: 3.428950e-01	ci right 3.440199e-01	k: 941073	n:2740000
KS ci ratio: 8.357433e-01	ci left: 4.744287e-06	ci right 1.171557e-05	k: 21	n:2740000
NDUFS4   2740000 perm   3069 sec   (893 perm/sec)   p_kst 7.664234e-06   p_cons 3.434573e-01   p_joint 7.664234e-06

Joint ci ratio: 8.357433e-01	ci left: 4.727035e-06	ci right 1.167297e-05	k: 21	n:2750000
Cons ci ratio: 3.268380e-03	ci left: 3.428773e-01	ci right 3.440001e-01	k: 944456	n:2750000
KS ci ratio: 8.357433e-01	ci left: 4.727035e-06	ci right 1.167297e-05	k: 21	n:2750000
NDUFS4   2750000 perm   3090 sec   (890 perm/sec)   p_kst 7.636364e-06   p_cons 3.434385e-01   p_joint 7.636364e-06

Joint ci ratio: 8.357433e-01	ci left: 4.709909e-06	ci right 1.163068e-05	k: 21	n:2760000
Cons ci ratio: 3.262756e-03	ci left: 3.428365e-01	ci right 3.439573e-01	k: 947775	n:2760000
KS ci ratio: 8.357433e-01	ci left: 4.709909e-06	ci right 1.163068e-05	k: 21	n:2760000
NDUFS4   2760000 perm   3111 sec   (887 perm/sec)   p_kst 7.608696e-06   p_cons 3.433967e-01   p_joint 7.608696e-06

Joint ci ratio: 8.357433e-01	ci left: 4.692905e-06	ci right 1.158869e-05	k: 21	n:2770000
Cons ci ratio: 3.256971e-03	ci left: 3.428224e-01	ci right 3.439411e-01	k: 951167	n:2770000
KS ci ratio: 8.357433e-01	ci left: 4.692905e-06	ci right 1.158869e-05	k: 21	n:2770000
NDUFS4   2770000 perm   3132 sec   (884 perm/sec)   p_kst 7.581227e-06   p_cons 3.433816e-01   p_joint 7.581227e-06

Joint ci ratio: 8.357434e-01	ci left: 4.676024e-06	ci right 1.154700e-05	k: 21	n:2780000
Cons ci ratio: 3.251203e-03	ci left: 3.428102e-01	ci right 3.439269e-01	k: 954564	n:2780000
KS ci ratio: 8.357434e-01	ci left: 4.676024e-06	ci right 1.154700e-05	k: 21	n:2780000
NDUFS4   2780000 perm   3153 sec   (882 perm/sec)   p_kst 7.553957e-06   p_cons 3.433683e-01   p_joint 7.553957e-06

Joint ci ratio: 8.357434e-01	ci left: 4.659264e-06	ci right 1.150562e-05	k: 21	n:2790000
Cons ci ratio: 3.245479e-03	ci left: 3.427962e-01	ci right 3.439109e-01	k: 957956	n:2790000
KS ci ratio: 8.357434e-01	ci left: 4.659264e-06	ci right 1.150562e-05	k: 21	n:2790000
NDUFS4   2790000 perm   3174 sec   (879 perm/sec)   p_kst 7.526882e-06   p_cons 3.433534e-01   p_joint 7.526882e-06

Joint ci ratio: 8.357434e-01	ci left: 4.642624e-06	ci right 1.146452e-05	k: 21	n:2800000
Cons ci ratio: 3.239669e-03	ci left: 3.427985e-01	ci right 3.439112e-01	k: 961393	n:2800000
KS ci ratio: 8.357434e-01	ci left: 4.642624e-06	ci right 1.146452e-05	k: 21	n:2800000
NDUFS4   2800000 perm   3195 sec   (876 perm/sec)   p_kst 7.500000e-06   p_cons 3.433546e-01   p_joint 7.500000e-06

Joint ci ratio: 8.357434e-01	ci left: 4.626102e-06	ci right 1.142373e-05	k: 21	n:2810000
Cons ci ratio: 3.234024e-03	ci left: 3.427822e-01	ci right 3.438929e-01	k: 964778	n:2810000
KS ci ratio: 8.357434e-01	ci left: 4.626102e-06	ci right 1.142373e-05	k: 21	n:2810000
NDUFS4   2810000 perm   3216 sec   (874 perm/sec)   p_kst 7.473310e-06   p_cons 3.433374e-01   p_joint 7.473310e-06

Joint ci ratio: 8.357434e-01	ci left: 4.609698e-06	ci right 1.138322e-05	k: 21	n:2820000
Cons ci ratio: 3.228336e-03	ci left: 3.427759e-01	ci right 3.438847e-01	k: 968191	n:2820000
KS ci ratio: 8.357434e-01	ci left: 4.609698e-06	ci right 1.138322e-05	k: 21	n:2820000
NDUFS4   2820000 perm   3238 sec   (871 perm/sec)   p_kst 7.446809e-06   p_cons 3.433301e-01   p_joint 7.446809e-06

Joint ci ratio: 8.357434e-01	ci left: 4.593409e-06	ci right 1.134299e-05	k: 21	n:2830000
Cons ci ratio: 3.222742e-03	ci left: 3.427609e-01	ci right 3.438677e-01	k: 971579	n:2830000
KS ci ratio: 8.357434e-01	ci left: 4.593409e-06	ci right 1.134299e-05	k: 21	n:2830000
NDUFS4   2830000 perm   3259 sec   (868 perm/sec)   p_kst 7.420495e-06   p_cons 3.433141e-01   p_joint 7.420495e-06

Joint ci ratio: 8.357434e-01	ci left: 4.577235e-06	ci right 1.130305e-05	k: 21	n:2840000
Cons ci ratio: 3.217016e-03	ci left: 3.427685e-01	ci right 3.438733e-01	k: 975031	n:2840000
KS ci ratio: 8.357434e-01	ci left: 4.577235e-06	ci right 1.130305e-05	k: 21	n:2840000
NDUFS4   2840000 perm   3280 sec   (866 perm/sec)   p_kst 7.394366e-06   p_cons 3.433208e-01   p_joint 7.394366e-06

Joint ci ratio: 8.357434e-01	ci left: 4.561174e-06	ci right 1.126339e-05	k: 21	n:2850000
Cons ci ratio: 3.211477e-03	ci left: 3.427540e-01	ci right 3.438568e-01	k: 978420	n:2850000
KS ci ratio: 8.357434e-01	ci left: 4.561174e-06	ci right 1.126339e-05	k: 21	n:2850000
NDUFS4   2850000 perm   3302 sec   (863 perm/sec)   p_kst 7.368421e-06   p_cons 3.433053e-01   p_joint 7.368421e-06

Joint ci ratio: 8.357434e-01	ci left: 4.545226e-06	ci right 1.122401e-05	k: 21	n:2860000
Cons ci ratio: 3.205721e-03	ci left: 3.427742e-01	ci right 3.438751e-01	k: 981908	n:2860000
KS ci ratio: 8.357434e-01	ci left: 4.545226e-06	ci right 1.122401e-05	k: 21	n:2860000
NDUFS4   2860000 perm   3323 sec   (861 perm/sec)   p_kst 7.342657e-06   p_cons 3.433245e-01   p_joint 7.342657e-06

Joint ci ratio: 8.357435e-01	ci left: 4.529389e-06	ci right 1.118490e-05	k: 21	n:2870000
Cons ci ratio: 3.200154e-03	ci left: 3.427719e-01	ci right 3.438709e-01	k: 985332	n:2870000
KS ci ratio: 8.357435e-01	ci left: 4.529389e-06	ci right 1.118490e-05	k: 21	n:2870000
NDUFS4   2870000 perm   3345 sec   (858 perm/sec)   p_kst 7.317073e-06   p_cons 3.433213e-01   p_joint 7.317073e-06

Joint ci ratio: 8.357435e-01	ci left: 4.513662e-06	ci right 1.114607e-05	k: 21	n:2880000
Cons ci ratio: 3.194798e-03	ci left: 3.427440e-01	ci right 3.438411e-01	k: 988682	n:2880000
KS ci ratio: 8.357435e-01	ci left: 4.513662e-06	ci right 1.114607e-05	k: 21	n:2880000
NDUFS4   2880000 perm   3366 sec   (856 perm/sec)   p_kst 7.291667e-06   p_cons 3.432924e-01   p_joint 7.291667e-06

Joint ci ratio: 8.357435e-01	ci left: 4.498044e-06	ci right 1.110750e-05	k: 21	n:2890000
Cons ci ratio: 3.189496e-03	ci left: 3.427124e-01	ci right 3.438076e-01	k: 992021	n:2890000
KS ci ratio: 8.357435e-01	ci left: 4.498044e-06	ci right 1.110750e-05	k: 21	n:2890000
NDUFS4   2890000 perm   3388 sec   (853 perm/sec)   p_kst 7.266436e-06   p_cons 3.432599e-01   p_joint 7.266436e-06

Joint ci ratio: 8.357435e-01	ci left: 4.482533e-06	ci right 1.106920e-05	k: 21	n:2900000
Cons ci ratio: 3.183969e-03	ci left: 3.427166e-01	ci right 3.438099e-01	k: 995463	n:2900000
KS ci ratio: 8.357435e-01	ci left: 4.482533e-06	ci right 1.106920e-05	k: 21	n:2900000
NDUFS4   2900000 perm   3410 sec   (850 perm/sec)   p_kst 7.241379e-06   p_cons 3.432631e-01   p_joint 7.241379e-06

Joint ci ratio: 8.357435e-01	ci left: 4.467129e-06	ci right 1.103116e-05	k: 21	n:2910000
Cons ci ratio: 3.178612e-03	ci left: 3.427009e-01	ci right 3.437922e-01	k: 998847	n:2910000
KS ci ratio: 8.357435e-01	ci left: 4.467129e-06	ci right 1.103116e-05	k: 21	n:2910000
NDUFS4   2910000 perm   3432 sec   (848 perm/sec)   p_kst 7.216495e-06   p_cons 3.432464e-01   p_joint 7.216495e-06

Joint ci ratio: 8.357435e-01	ci left: 4.451831e-06	ci right 1.099338e-05	k: 21	n:2920000
Cons ci ratio: 3.173030e-03	ci left: 3.427208e-01	ci right 3.438103e-01	k: 1002335	n:2920000
KS ci ratio: 8.357435e-01	ci left: 4.451831e-06	ci right 1.099338e-05	k: 21	n:2920000
NDUFS4   2920000 perm   3454 sec   (845 perm/sec)   p_kst 7.191781e-06   p_cons 3.432654e-01   p_joint 7.191781e-06

Joint ci ratio: 8.357435e-01	ci left: 4.436637e-06	ci right 1.095586e-05	k: 21	n:2930000
Cons ci ratio: 3.167771e-03	ci left: 3.426990e-01	ci right 3.437866e-01	k: 1005701	n:2930000
KS ci ratio: 8.357435e-01	ci left: 4.436637e-06	ci right 1.095586e-05	k: 21	n:2930000
NDUFS4   2930000 perm   3476 sec   (843 perm/sec)   p_kst 7.167235e-06   p_cons 3.432427e-01   p_joint 7.167235e-06

Joint ci ratio: 8.357435e-01	ci left: 4.421546e-06	ci right 1.091860e-05	k: 21	n:2940000
Cons ci ratio: 3.162533e-03	ci left: 3.426780e-01	ci right 3.437638e-01	k: 1009069	n:2940000
KS ci ratio: 8.357435e-01	ci left: 4.421546e-06	ci right 1.091860e-05	k: 21	n:2940000
NDUFS4   2940000 perm   3498 sec   (840 perm/sec)   p_kst 7.142857e-06   p_cons 3.432207e-01   p_joint 7.142857e-06

Joint ci ratio: 8.357436e-01	ci left: 4.406558e-06	ci right 1.088158e-05	k: 21	n:2950000
Cons ci ratio: 3.157206e-03	ci left: 3.426734e-01	ci right 3.437574e-01	k: 1012485	n:2950000
KS ci ratio: 8.357436e-01	ci left: 4.406558e-06	ci right 1.088158e-05	k: 21	n:2950000
NDUFS4   2950000 perm   3520 sec   (838 perm/sec)   p_kst 7.118644e-06   p_cons 3.432153e-01   p_joint 7.118644e-06

Joint ci ratio: 8.357436e-01	ci left: 4.391671e-06	ci right 1.084482e-05	k: 21	n:2960000
Cons ci ratio: 3.151874e-03	ci left: 3.426736e-01	ci right 3.437557e-01	k: 1015915	n:2960000
KS ci ratio: 8.357436e-01	ci left: 4.391671e-06	ci right 1.084482e-05	k: 21	n:2960000
NDUFS4   2960000 perm   3542 sec   (836 perm/sec)   p_kst 7.094595e-06   p_cons 3.432145e-01   p_joint 7.094595e-06

Joint ci ratio: 8.357436e-01	ci left: 4.376884e-06	ci right 1.080831e-05	k: 21	n:2970000
Cons ci ratio: 3.146735e-03	ci left: 3.426499e-01	ci right 3.437302e-01	k: 1019274	n:2970000
KS ci ratio: 8.357436e-01	ci left: 4.376884e-06	ci right 1.080831e-05	k: 21	n:2970000
NDUFS4   2970000 perm   3564 sec   (833 perm/sec)   p_kst 7.070707e-06   p_cons 3.431899e-01   p_joint 7.070707e-06

Joint ci ratio: 8.357436e-01	ci left: 4.362197e-06	ci right 1.077204e-05	k: 21	n:2980000
Cons ci ratio: 3.141458e-03	ci left: 3.426499e-01	ci right 3.437283e-01	k: 1022703	n:2980000
KS ci ratio: 8.357436e-01	ci left: 4.362197e-06	ci right 1.077204e-05	k: 21	n:2980000
NDUFS4   2980000 perm   3586 sec   (831 perm/sec)   p_kst 7.046980e-06   p_cons 3.431889e-01   p_joint 7.046980e-06

Joint ci ratio: 8.357436e-01	ci left: 4.347607e-06	ci right 1.073601e-05	k: 21	n:2990000
Cons ci ratio: 3.136193e-03	ci left: 3.426518e-01	ci right 3.437284e-01	k: 1026138	n:2990000
KS ci ratio: 8.357436e-01	ci left: 4.347607e-06	ci right 1.073601e-05	k: 21	n:2990000
NDUFS4   2990000 perm   3609 sec   (828 perm/sec)   p_kst 7.023411e-06   p_cons 3.431900e-01   p_joint 7.023411e-06

Joint ci ratio: 8.357436e-01	ci left: 4.333115e-06	ci right 1.070022e-05	k: 21	n:3000000
Cons ci ratio: 3.130887e-03	ci left: 3.426634e-01	ci right 3.437382e-01	k: 1029602	n:3000000
KS ci ratio: 8.357436e-01	ci left: 4.333115e-06	ci right 1.070022e-05	k: 21	n:3000000
NDUFS4   3000000 perm   3631 sec   (826 perm/sec)   p_kst 7.000000e-06   p_cons 3.432007e-01   p_joint 7.000000e-06

Joint ci ratio: 8.357436e-01	ci left: 4.318720e-06	ci right 1.066467e-05	k: 21	n:3010000
Cons ci ratio: 3.125719e-03	ci left: 3.426590e-01	ci right 3.437320e-01	k: 1033018	n:3010000
KS ci ratio: 8.357436e-01	ci left: 4.318720e-06	ci right 1.066467e-05	k: 21	n:3010000
NDUFS4   3010000 perm   3655 sec   (824 perm/sec)   p_kst 6.976744e-06   p_cons 3.431953e-01   p_joint 6.976744e-06

Joint ci ratio: 8.357436e-01	ci left: 4.304419e-06	ci right 1.062936e-05	k: 21	n:3020000
Cons ci ratio: 3.120310e-03	ci left: 3.426930e-01	ci right 3.437643e-01	k: 1036550	n:3020000
KS ci ratio: 8.357436e-01	ci left: 4.304419e-06	ci right 1.062936e-05	k: 21	n:3020000
NDUFS4   3020000 perm   3678 sec   (821 perm/sec)   p_kst 6.953642e-06   p_cons 3.432285e-01   p_joint 6.953642e-06

Joint ci ratio: 8.357436e-01	ci left: 4.290213e-06	ci right 1.059428e-05	k: 21	n:3030000
Cons ci ratio: 3.115050e-03	ci left: 3.427093e-01	ci right 3.437788e-01	k: 1040029	n:3030000
KS ci ratio: 8.357436e-01	ci left: 4.290213e-06	ci right 1.059428e-05	k: 21	n:3030000
NDUFS4   3030000 perm   3700 sec   (819 perm/sec)   p_kst 6.930693e-06   p_cons 3.432439e-01   p_joint 6.930693e-06

Joint ci ratio: 8.357436e-01	ci left: 4.276101e-06	ci right 1.055943e-05	k: 21	n:3040000
Cons ci ratio: 3.109965e-03	ci left: 3.427041e-01	ci right 3.437719e-01	k: 1043443	n:3040000
KS ci ratio: 8.357436e-01	ci left: 4.276101e-06	ci right 1.055943e-05	k: 21	n:3040000
NDUFS4   3040000 perm   3723 sec   (817 perm/sec)   p_kst 6.907895e-06   p_cons 3.432378e-01   p_joint 6.907895e-06

Joint ci ratio: 8.357437e-01	ci left: 4.262081e-06	ci right 1.052481e-05	k: 21	n:3050000
Cons ci ratio: 3.105032e-03	ci left: 3.426803e-01	ci right 3.437463e-01	k: 1046800	n:3050000
KS ci ratio: 8.357437e-01	ci left: 4.262081e-06	ci right 1.052481e-05	k: 21	n:3050000
NDUFS4   3050000 perm   3746 sec   (814 perm/sec)   p_kst 6.885246e-06   p_cons 3.432131e-01   p_joint 6.885246e-06

Joint ci ratio: 8.357437e-01	ci left: 4.248152e-06	ci right 1.049042e-05	k: 21	n:3060000
Cons ci ratio: 3.099780e-03	ci left: 3.427066e-01	ci right 3.437708e-01	k: 1050310	n:3060000
KS ci ratio: 8.357437e-01	ci left: 4.248152e-06	ci right 1.049042e-05	k: 21	n:3060000
NDUFS4   3060000 perm   3768 sec   (812 perm/sec)   p_kst 6.862745e-06   p_cons 3.432386e-01   p_joint 6.862745e-06

Joint ci ratio: 8.173733e-01	ci left: 4.490977e-06	ci right 1.084958e-05	k: 22	n:3070000
Cons ci ratio: 3.094773e-03	ci left: 3.427008e-01	ci right 3.437633e-01	k: 1053722	n:3070000
KS ci ratio: 8.173733e-01	ci left: 4.490977e-06	ci right 1.084958e-05	k: 22	n:3070000
NDUFS4   3070000 perm   3791 sec   (810 perm/sec)   p_kst 7.166124e-06   p_cons 3.432319e-01   p_joint 7.166124e-06

Joint ci ratio: 8.173733e-01	ci left: 4.476396e-06	ci right 1.081435e-05	k: 22	n:3080000
Cons ci ratio: 3.089852e-03	ci left: 3.426860e-01	ci right 3.437468e-01	k: 1057106	n:3080000
KS ci ratio: 8.173733e-01	ci left: 4.476396e-06	ci right 1.081435e-05	k: 22	n:3080000
NDUFS4   3080000 perm   3814 sec   (808 perm/sec)   p_kst 7.142857e-06   p_cons 3.432162e-01   p_joint 7.142857e-06

Joint ci ratio: 8.173733e-01	ci left: 4.461909e-06	ci right 1.077935e-05	k: 22	n:3090000
Cons ci ratio: 3.084911e-03	ci left: 3.426777e-01	ci right 3.437368e-01	k: 1060510	n:3090000
KS ci ratio: 8.173733e-01	ci left: 4.461909e-06	ci right 1.077935e-05	k: 22	n:3090000
NDUFS4   3090000 perm   3837 sec   (805 perm/sec)   p_kst 7.119741e-06   p_cons 3.432071e-01   p_joint 7.119741e-06

Joint ci ratio: 8.173733e-01	ci left: 4.447516e-06	ci right 1.074458e-05	k: 22	n:3100000
Cons ci ratio: 3.080107e-03	ci left: 3.426528e-01	ci right 3.437101e-01	k: 1063862	n:3100000
KS ci ratio: 8.173733e-01	ci left: 4.447516e-06	ci right 1.074458e-05	k: 22	n:3100000
NDUFS4   3100000 perm   3860 sec   (803 perm/sec)   p_kst 7.096774e-06   p_cons 3.431813e-01   p_joint 7.096774e-06

Joint ci ratio: 8.173733e-01	ci left: 4.433215e-06	ci right 1.071003e-05	k: 22	n:3110000
Cons ci ratio: 3.075191e-03	ci left: 3.426479e-01	ci right 3.437035e-01	k: 1067276	n:3110000
KS ci ratio: 8.173733e-01	ci left: 4.433215e-06	ci right 1.071003e-05	k: 22	n:3110000
NDUFS4   3110000 perm   3884 sec   (801 perm/sec)   p_kst 7.073955e-06   p_cons 3.431756e-01   p_joint 7.073955e-06

Joint ci ratio: 8.173734e-01	ci left: 4.419006e-06	ci right 1.067571e-05	k: 22	n:3120000
Cons ci ratio: 3.070382e-03	ci left: 3.426306e-01	ci right 3.436845e-01	k: 1070651	n:3120000
KS ci ratio: 8.173734e-01	ci left: 4.419006e-06	ci right 1.067571e-05	k: 22	n:3120000
NDUFS4   3120000 perm   3907 sec   (799 perm/sec)   p_kst 7.051282e-06   p_cons 3.431574e-01   p_joint 7.051282e-06

Joint ci ratio: 8.173734e-01	ci left: 4.404888e-06	ci right 1.064160e-05	k: 22	n:3130000
Cons ci ratio: 3.065488e-03	ci left: 3.426293e-01	ci right 3.436815e-01	k: 1074076	n:3130000
KS ci ratio: 8.173734e-01	ci left: 4.404888e-06	ci right 1.064160e-05	k: 22	n:3130000
NDUFS4   3130000 perm   3930 sec   (796 perm/sec)   p_kst 7.028754e-06   p_cons 3.431553e-01   p_joint 7.028754e-06

Joint ci ratio: 8.173734e-01	ci left: 4.390859e-06	ci right 1.060771e-05	k: 22	n:3140000
Cons ci ratio: 3.060567e-03	ci left: 3.426354e-01	ci right 3.436859e-01	k: 1077524	n:3140000
KS ci ratio: 8.173734e-01	ci left: 4.390859e-06	ci right 1.060771e-05	k: 22	n:3140000
NDUFS4   3140000 perm   3954 sec   (794 perm/sec)   p_kst 7.006369e-06   p_cons 3.431605e-01   p_joint 7.006369e-06

Joint ci ratio: 8.173734e-01	ci left: 4.376920e-06	ci right 1.057403e-05	k: 22	n:3150000
Cons ci ratio: 3.055567e-03	ci left: 3.426566e-01	ci right 3.437056e-01	k: 1081020	n:3150000
KS ci ratio: 8.173734e-01	ci left: 4.376920e-06	ci right 1.057403e-05	k: 22	n:3150000
NDUFS4   3150000 perm   3977 sec   (792 perm/sec)   p_kst 6.984127e-06   p_cons 3.431810e-01   p_joint 6.984127e-06

Joint ci ratio: 8.173734e-01	ci left: 4.363069e-06	ci right 1.054057e-05	k: 22	n:3160000
Cons ci ratio: 3.050574e-03	ci left: 3.426803e-01	ci right 3.437276e-01	k: 1084524	n:3160000
KS ci ratio: 8.173734e-01	ci left: 4.363069e-06	ci right 1.054057e-05	k: 22	n:3160000
NDUFS4   3160000 perm   4001 sec   (790 perm/sec)   p_kst 6.962025e-06   p_cons 3.432038e-01   p_joint 6.962025e-06

Joint ci ratio: 8.173734e-01	ci left: 4.349306e-06	ci right 1.050732e-05	k: 22	n:3170000
Cons ci ratio: 3.045524e-03	ci left: 3.427158e-01	ci right 3.437614e-01	k: 1088066	n:3170000
KS ci ratio: 8.173734e-01	ci left: 4.349306e-06	ci right 1.050732e-05	k: 22	n:3170000
NDUFS4   3170000 perm   4026 sec   (787 perm/sec)   p_kst 6.940063e-06   p_cons 3.432385e-01   p_joint 6.940063e-06

Joint ci ratio: 8.173734e-01	ci left: 4.335628e-06	ci right 1.047428e-05	k: 22	n:3180000
Cons ci ratio: 3.040599e-03	ci left: 3.427363e-01	ci right 3.437803e-01	k: 1091561	n:3180000
KS ci ratio: 8.173734e-01	ci left: 4.335628e-06	ci right 1.047428e-05	k: 22	n:3180000
NDUFS4   3180000 perm   4049 sec   (785 perm/sec)   p_kst 6.918239e-06   p_cons 3.432582e-01   p_joint 6.918239e-06

Joint ci ratio: 8.173734e-01	ci left: 4.322037e-06	ci right 1.044144e-05	k: 22	n:3190000
Cons ci ratio: 3.035944e-03	ci left: 3.427200e-01	ci right 3.437624e-01	k: 1094939	n:3190000
KS ci ratio: 8.173734e-01	ci left: 4.322037e-06	ci right 1.044144e-05	k: 22	n:3190000
NDUFS4   3190000 perm   4073 sec   (783 perm/sec)   p_kst 6.896552e-06   p_cons 3.432411e-01   p_joint 6.896552e-06

Joint ci ratio: 8.173734e-01	ci left: 4.308531e-06	ci right 1.040881e-05	k: 22	n:3200000
Cons ci ratio: 3.031276e-03	ci left: 3.427092e-01	ci right 3.437499e-01	k: 1098334	n:3200000
KS ci ratio: 8.173734e-01	ci left: 4.308531e-06	ci right 1.040881e-05	k: 22	n:3200000
NDUFS4   3200000 perm   4097 sec   (781 perm/sec)   p_kst 6.875000e-06   p_cons 3.432294e-01   p_joint 6.875000e-06

Joint ci ratio: 8.173734e-01	ci left: 4.295109e-06	ci right 1.037639e-05	k: 22	n:3210000
Cons ci ratio: 3.026557e-03	ci left: 3.427089e-01	ci right 3.437480e-01	k: 1101763	n:3210000
KS ci ratio: 8.173734e-01	ci left: 4.295109e-06	ci right 1.037639e-05	k: 22	n:3210000
NDUFS4   3210000 perm   4121 sec   (779 perm/sec)   p_kst 6.853583e-06   p_cons 3.432283e-01   p_joint 6.853583e-06

Joint ci ratio: 8.173735e-01	ci left: 4.281770e-06	ci right 1.034416e-05	k: 22	n:3220000
Cons ci ratio: 3.021984e-03	ci left: 3.426904e-01	ci right 3.437279e-01	k: 1105133	n:3220000
KS ci ratio: 8.173735e-01	ci left: 4.281770e-06	ci right 1.034416e-05	k: 22	n:3220000
NDUFS4   3220000 perm   4145 sec   (777 perm/sec)   p_kst 6.832298e-06   p_cons 3.432090e-01   p_joint 6.832298e-06

Joint ci ratio: 8.173735e-01	ci left: 4.268513e-06	ci right 1.031214e-05	k: 22	n:3230000
Cons ci ratio: 3.017300e-03	ci left: 3.426915e-01	ci right 3.437274e-01	k: 1108566	n:3230000
KS ci ratio: 8.173735e-01	ci left: 4.268513e-06	ci right 1.031214e-05	k: 22	n:3230000
NDUFS4   3230000 perm   4169 sec   (775 perm/sec)   p_kst 6.811146e-06   p_cons 3.432093e-01   p_joint 6.811146e-06

Joint ci ratio: 8.173735e-01	ci left: 4.255339e-06	ci right 1.028031e-05	k: 22	n:3240000
Cons ci ratio: 3.012712e-03	ci left: 3.426815e-01	ci right 3.437157e-01	k: 1111963	n:3240000
KS ci ratio: 8.173735e-01	ci left: 4.255339e-06	ci right 1.028031e-05	k: 22	n:3240000
NDUFS4   3240000 perm   4193 sec   (773 perm/sec)   p_kst 6.790123e-06   p_cons 3.431985e-01   p_joint 6.790123e-06

Joint ci ratio: 8.173735e-01	ci left: 4.242246e-06	ci right 1.024868e-05	k: 22	n:3250000
Cons ci ratio: 3.007934e-03	ci left: 3.427032e-01	ci right 3.437359e-01	k: 1115463	n:3250000
KS ci ratio: 8.173735e-01	ci left: 4.242246e-06	ci right 1.024868e-05	k: 22	n:3250000
NDUFS4   3250000 perm   4217 sec   (771 perm/sec)   p_kst 6.769231e-06   p_cons 3.432194e-01   p_joint 6.769231e-06

Joint ci ratio: 8.173735e-01	ci left: 4.229233e-06	ci right 1.021724e-05	k: 22	n:3260000
Cons ci ratio: 3.003259e-03	ci left: 3.427128e-01	ci right 3.437439e-01	k: 1118924	n:3260000
KS ci ratio: 8.173735e-01	ci left: 4.229233e-06	ci right 1.021724e-05	k: 22	n:3260000
NDUFS4   3260000 perm   4242 sec   (768 perm/sec)   p_kst 6.748466e-06   p_cons 3.432282e-01   p_joint 6.748466e-06

Joint ci ratio: 8.173735e-01	ci left: 4.216299e-06	ci right 1.018600e-05	k: 22	n:3270000
Cons ci ratio: 2.998476e-03	ci left: 3.427416e-01	ci right 3.437712e-01	k: 1122448	n:3270000
KS ci ratio: 8.173735e-01	ci left: 4.216299e-06	ci right 1.018600e-05	k: 22	n:3270000
NDUFS4   3270000 perm   4266 sec   (766 perm/sec)   p_kst 6.727829e-06   p_cons 3.432563e-01   p_joint 6.727829e-06

Joint ci ratio: 8.173735e-01	ci left: 4.203445e-06	ci right 1.015494e-05	k: 22	n:3280000
Cons ci ratio: 2.993798e-03	ci left: 3.427581e-01	ci right 3.437861e-01	k: 1125932	n:3280000
KS ci ratio: 8.173735e-01	ci left: 4.203445e-06	ci right 1.015494e-05	k: 22	n:3280000
NDUFS4   3280000 perm   4291 sec   (764 perm/sec)   p_kst 6.707317e-06   p_cons 3.432720e-01   p_joint 6.707317e-06

Joint ci ratio: 8.173735e-01	ci left: 4.190668e-06	ci right 1.012408e-05	k: 22	n:3290000
Cons ci ratio: 3.081230e-03	ci left: 3.292315e-01	ci right 3.302478e-01	k: 1084843	n:3290000
KS ci ratio: 8.173735e-01	ci left: 4.190668e-06	ci right 1.012408e-05	k: 22	n:3290000
NDUFS4   3290000 perm   4315 sec   (762 perm/sec)   p_kst 6.686930e-06   p_cons 3.297395e-01   p_joint 6.686930e-06

Joint ci ratio: 8.173735e-01	ci left: 4.177969e-06	ci right 1.009340e-05	k: 22	n:3300000
Cons ci ratio: 3.076662e-03	ci left: 3.292173e-01	ci right 3.302321e-01	k: 1088091	n:3300000
KS ci ratio: 8.173735e-01	ci left: 4.177969e-06	ci right 1.009340e-05	k: 22	n:3300000
NDUFS4   3300000 perm   4340 sec   (760 perm/sec)   p_kst 6.666667e-06   p_cons 3.297245e-01   p_joint 6.666667e-06

Joint ci ratio: 8.173735e-01	ci left: 4.165347e-06	ci right 1.006290e-05	k: 22	n:3310000
Cons ci ratio: 3.072186e-03	ci left: 3.291930e-01	ci right 3.302061e-01	k: 1091305	n:3310000
KS ci ratio: 8.173735e-01	ci left: 4.165347e-06	ci right 1.006290e-05	k: 22	n:3310000
NDUFS4   3310000 perm   4365 sec   (758 perm/sec)   p_kst 6.646526e-06   p_cons 3.296994e-01   p_joint 6.646526e-06

Joint ci ratio: 8.173735e-01	ci left: 4.152801e-06	ci right 1.003259e-05	k: 22	n:3320000
Cons ci ratio: 3.067524e-03	ci left: 3.291982e-01	ci right 3.302099e-01	k: 1094617	n:3320000
KS ci ratio: 8.173735e-01	ci left: 4.152801e-06	ci right 1.003259e-05	k: 22	n:3320000
NDUFS4   3320000 perm   4389 sec   (756 perm/sec)   p_kst 6.626506e-06   p_cons 3.297039e-01   p_joint 6.626506e-06

Joint ci ratio: 8.173736e-01	ci left: 4.140330e-06	ci right 1.000246e-05	k: 22	n:3330000
Cons ci ratio: 3.062988e-03	ci left: 3.291885e-01	ci right 3.301986e-01	k: 1097879	n:3330000
KS ci ratio: 8.173736e-01	ci left: 4.140330e-06	ci right 1.000246e-05	k: 22	n:3330000
NDUFS4   3330000 perm   4414 sec   (754 perm/sec)   p_kst 6.606607e-06   p_cons 3.296934e-01   p_joint 6.606607e-06

Joint ci ratio: 8.173736e-01	ci left: 4.127933e-06	ci right 9.972517e-06	k: 22	n:3340000
Cons ci ratio: 3.058223e-03	ci left: 3.292147e-01	ci right 3.302233e-01	k: 1101261	n:3340000
KS ci ratio: 8.173736e-01	ci left: 4.127933e-06	ci right 9.972517e-06	k: 22	n:3340000
NDUFS4   3340000 perm   4439 sec   (752 perm/sec)   p_kst 6.586826e-06   p_cons 3.297189e-01   p_joint 6.586826e-06

Joint ci ratio: 8.173736e-01	ci left: 4.115611e-06	ci right 9.942749e-06	k: 22	n:3350000
Cons ci ratio: 3.053660e-03	ci left: 3.292148e-01	ci right 3.302219e-01	k: 1104556	n:3350000
KS ci ratio: 8.173736e-01	ci left: 4.115611e-06	ci right 9.942749e-06	k: 22	n:3350000
NDUFS4   3350000 perm   4465 sec   (750 perm/sec)   p_kst 6.567164e-06   p_cons 3.297182e-01   p_joint 6.567164e-06

Joint ci ratio: 8.173736e-01	ci left: 4.103362e-06	ci right 9.913157e-06	k: 22	n:3360000
Cons ci ratio: 3.049110e-03	ci left: 3.292158e-01	ci right 3.302214e-01	k: 1107854	n:3360000
KS ci ratio: 8.173736e-01	ci left: 4.103362e-06	ci right 9.913157e-06	k: 22	n:3360000
NDUFS4   3360000 perm   4490 sec   (748 perm/sec)   p_kst 6.547619e-06   p_cons 3.297185e-01   p_joint 6.547619e-06

Joint ci ratio: 8.173736e-01	ci left: 4.091186e-06	ci right 9.883741e-06	k: 22	n:3370000
Cons ci ratio: 3.044622e-03	ci left: 3.292108e-01	ci right 3.302150e-01	k: 1111132	n:3370000
KS ci ratio: 8.173736e-01	ci left: 4.091186e-06	ci right 9.883741e-06	k: 22	n:3370000
NDUFS4   3370000 perm   4515 sec   (746 perm/sec)   p_kst 6.528190e-06   p_cons 3.297128e-01   p_joint 6.528190e-06

Joint ci ratio: 8.173736e-01	ci left: 4.079082e-06	ci right 9.854500e-06	k: 22	n:3380000
Cons ci ratio: 3.040152e-03	ci left: 3.292062e-01	ci right 3.302089e-01	k: 1114411	n:3380000
KS ci ratio: 8.173736e-01	ci left: 4.079082e-06	ci right 9.854500e-06	k: 22	n:3380000
NDUFS4   3380000 perm   4541 sec   (744 perm/sec)   p_kst 6.508876e-06   p_cons 3.297074e-01   p_joint 6.508876e-06

Joint ci ratio: 8.173736e-01	ci left: 4.067049e-06	ci right 9.825430e-06	k: 22	n:3390000
Cons ci ratio: 3.035886e-03	ci left: 3.291748e-01	ci right 3.301759e-01	k: 1117599	n:3390000
KS ci ratio: 8.173736e-01	ci left: 4.067049e-06	ci right 9.825430e-06	k: 22	n:3390000
NDUFS4   3390000 perm   4567 sec   (742 perm/sec)   p_kst 6.489676e-06   p_cons 3.296752e-01   p_joint 6.489676e-06

Joint ci ratio: 8.173736e-01	ci left: 4.055087e-06	ci right 9.796532e-06	k: 22	n:3400000
Cons ci ratio: 3.031472e-03	ci left: 3.291677e-01	ci right 3.301673e-01	k: 1120869	n:3400000
KS ci ratio: 8.173736e-01	ci left: 4.055087e-06	ci right 9.796532e-06	k: 22	n:3400000
NDUFS4   3400000 perm   4592 sec   (740 perm/sec)   p_kst 6.470588e-06   p_cons 3.296674e-01   p_joint 6.470588e-06

Joint ci ratio: 8.173736e-01	ci left: 4.043196e-06	ci right 9.767803e-06	k: 22	n:3410000
Cons ci ratio: 3.026999e-03	ci left: 3.291720e-01	ci right 3.301702e-01	k: 1124178	n:3410000
KS ci ratio: 8.173736e-01	ci left: 4.043196e-06	ci right 9.767803e-06	k: 22	n:3410000
NDUFS4   3410000 perm   4618 sec   (738 perm/sec)   p_kst 6.451613e-06   p_cons 3.296710e-01   p_joint 6.451613e-06

Joint ci ratio: 8.173736e-01	ci left: 4.031374e-06	ci right 9.739242e-06	k: 22	n:3420000
Cons ci ratio: 3.022464e-03	ci left: 3.291883e-01	ci right 3.301851e-01	k: 1127528	n:3420000
KS ci ratio: 8.173736e-01	ci left: 4.031374e-06	ci right 9.739242e-06	k: 22	n:3420000
NDUFS4   3420000 perm   4643 sec   (737 perm/sec)   p_kst 6.432749e-06   p_cons 3.296865e-01   p_joint 6.432749e-06

Joint ci ratio: 8.173736e-01	ci left: 4.019620e-06	ci right 9.710848e-06	k: 22	n:3430000
Cons ci ratio: 3.018134e-03	ci left: 3.291774e-01	ci right 3.301727e-01	k: 1130785	n:3430000
KS ci ratio: 8.173736e-01	ci left: 4.019620e-06	ci right 9.710848e-06	k: 22	n:3430000
NDUFS4   3430000 perm   4669 sec   (735 perm/sec)   p_kst 6.413994e-06   p_cons 3.296749e-01   p_joint 6.413994e-06

Joint ci ratio: 8.001637e-01	ci left: 4.238385e-06	ci right 1.003234e-05	k: 23	n:3440000
Cons ci ratio: 3.013704e-03	ci left: 3.291840e-01	ci right 3.301779e-01	k: 1134102	n:3440000
KS ci ratio: 8.001637e-01	ci left: 4.238385e-06	ci right 1.003234e-05	k: 23	n:3440000
NDUFS4   3440000 perm   4695 sec   (733 perm/sec)   p_kst 6.686047e-06   p_cons 3.296808e-01   p_joint 6.686047e-06

Joint ci ratio: 8.001638e-01	ci left: 4.226099e-06	ci right 1.000326e-05	k: 23	n:3450000
Cons ci ratio: 3.009475e-03	ci left: 3.291640e-01	ci right 3.301563e-01	k: 1137327	n:3450000
KS ci ratio: 8.001638e-01	ci left: 4.226099e-06	ci right 1.000326e-05	k: 23	n:3450000
NDUFS4   3450000 perm   4720 sec   (731 perm/sec)   p_kst 6.666667e-06   p_cons 3.296600e-01   p_joint 6.666667e-06

Joint ci ratio: 8.001638e-01	ci left: 4.213885e-06	ci right 9.974346e-06	k: 23	n:3460000
Cons ci ratio: 3.004972e-03	ci left: 3.291867e-01	ci right 3.301777e-01	k: 1140700	n:3460000
KS ci ratio: 8.001638e-01	ci left: 4.213885e-06	ci right 9.974346e-06	k: 23	n:3460000
NDUFS4   3460000 perm   4746 sec   (729 perm/sec)   p_kst 6.647399e-06   p_cons 3.296821e-01   p_joint 6.647399e-06

Joint ci ratio: 8.001638e-01	ci left: 4.201741e-06	ci right 9.945601e-06	k: 23	n:3470000
Cons ci ratio: 3.000549e-03	ci left: 3.292008e-01	ci right 3.301903e-01	k: 1144043	n:3470000
KS ci ratio: 8.001638e-01	ci left: 4.201741e-06	ci right 9.945601e-06	k: 23	n:3470000
NDUFS4   3470000 perm   4772 sec   (727 perm/sec)   p_kst 6.628242e-06   p_cons 3.296954e-01   p_joint 6.628242e-06

Joint ci ratio: 8.001638e-01	ci left: 4.189667e-06	ci right 9.917022e-06	k: 23	n:3480000
Cons ci ratio: 2.996112e-03	ci left: 3.292196e-01	ci right 3.302077e-01	k: 1147403	n:3480000
KS ci ratio: 8.001638e-01	ci left: 4.189667e-06	ci right 9.917022e-06	k: 23	n:3480000
NDUFS4   3480000 perm   4798 sec   (725 perm/sec)   p_kst 6.609195e-06   p_cons 3.297135e-01   p_joint 6.609195e-06

Joint ci ratio: 8.001638e-01	ci left: 4.177663e-06	ci right 9.888606e-06	k: 23	n:3490000
Cons ci ratio: 2.991896e-03	ci left: 3.292085e-01	ci right 3.301952e-01	k: 1150659	n:3490000
KS ci ratio: 8.001638e-01	ci left: 4.177663e-06	ci right 9.888606e-06	k: 23	n:3490000
NDUFS4   3490000 perm   4823 sec   (724 perm/sec)   p_kst 6.590258e-06   p_cons 3.297017e-01   p_joint 6.590258e-06

Joint ci ratio: 8.001638e-01	ci left: 4.165726e-06	ci right 9.860353e-06	k: 23	n:3500000
Cons ci ratio: 2.987621e-03	ci left: 3.292089e-01	ci right 3.301942e-01	k: 1153955	n:3500000
KS ci ratio: 8.001638e-01	ci left: 4.165726e-06	ci right 9.860353e-06	k: 23	n:3500000
NDUFS4   3500000 perm   4850 sec   (722 perm/sec)   p_kst 6.571429e-06   p_cons 3.297014e-01   p_joint 6.571429e-06

Joint ci ratio: 8.001638e-01	ci left: 4.153858e-06	ci right 9.832261e-06	k: 23	n:3510000
Cons ci ratio: 2.983410e-03	ci left: 3.292025e-01	ci right 3.301864e-01	k: 1157227	n:3510000
KS ci ratio: 8.001638e-01	ci left: 4.153858e-06	ci right 9.832261e-06	k: 23	n:3510000
NDUFS4   3510000 perm   4877 sec   (720 perm/sec)   p_kst 6.552707e-06   p_cons 3.296943e-01   p_joint 6.552707e-06

Joint ci ratio: 7.839971e-01	ci left: 4.368542e-06	ci right 1.014490e-05	k: 24	n:3520000
Cons ci ratio: 2.979066e-03	ci left: 3.292186e-01	ci right 3.302010e-01	k: 1160578	n:3520000
KS ci ratio: 7.839971e-01	ci left: 4.368542e-06	ci right 1.014490e-05	k: 24	n:3520000
NDUFS4   3520000 perm   4903 sec   (718 perm/sec)   p_kst 6.818182e-06   p_cons 3.297097e-01   p_joint 6.818182e-06

Joint ci ratio: 7.839971e-01	ci left: 4.356167e-06	ci right 1.011616e-05	k: 24	n:3530000
Cons ci ratio: 2.974821e-03	ci left: 3.292226e-01	ci right 3.302037e-01	k: 1163887	n:3530000
KS ci ratio: 7.839971e-01	ci left: 4.356167e-06	ci right 1.011616e-05	k: 24	n:3530000
NDUFS4   3530000 perm   4928 sec   (716 perm/sec)   p_kst 6.798867e-06   p_cons 3.297130e-01   p_joint 6.798867e-06

Joint ci ratio: 7.839971e-01	ci left: 4.343861e-06	ci right 1.008758e-05	k: 24	n:3540000
Cons ci ratio: 2.970648e-03	ci left: 3.292185e-01	ci right 3.301982e-01	k: 1167167	n:3540000
KS ci ratio: 7.839971e-01	ci left: 4.343861e-06	ci right 1.008758e-05	k: 24	n:3540000
NDUFS4   3540000 perm   4955 sec   (714 perm/sec)   p_kst 6.779661e-06   p_cons 3.297082e-01   p_joint 6.779661e-06

Joint ci ratio: 7.839971e-01	ci left: 4.331625e-06	ci right 1.005917e-05	k: 24	n:3550000
Cons ci ratio: 2.966371e-03	ci left: 3.292327e-01	ci right 3.302110e-01	k: 1170512	n:3550000
KS ci ratio: 7.839971e-01	ci left: 4.331625e-06	ci right 1.005917e-05	k: 24	n:3550000
NDUFS4   3550000 perm   4981 sec   (713 perm/sec)   p_kst 6.760563e-06   p_cons 3.297217e-01   p_joint 6.760563e-06

Joint ci ratio: 7.839971e-01	ci left: 4.319458e-06	ci right 1.003091e-05	k: 24	n:3560000
Cons ci ratio: 2.962210e-03	ci left: 3.292322e-01	ci right 3.302091e-01	k: 1173805	n:3560000
KS ci ratio: 7.839971e-01	ci left: 4.319458e-06	ci right 1.003091e-05	k: 24	n:3560000
NDUFS4   3560000 perm   5008 sec   (711 perm/sec)   p_kst 6.741573e-06   p_cons 3.297205e-01   p_joint 6.741573e-06

Joint ci ratio: 7.839971e-01	ci left: 4.307358e-06	ci right 1.000281e-05	k: 24	n:3570000
Cons ci ratio: 2.957981e-03	ci left: 3.292443e-01	ci right 3.302199e-01	k: 1177143	n:3570000
KS ci ratio: 7.839971e-01	ci left: 4.307358e-06	ci right 1.000281e-05	k: 24	n:3570000
NDUFS4   3570000 perm   5034 sec   (709 perm/sec)   p_kst 6.722689e-06   p_cons 3.297319e-01   p_joint 6.722689e-06

Joint ci ratio: 7.839972e-01	ci left: 4.295327e-06	ci right 9.974871e-06	k: 24	n:3580000
Cons ci ratio: 2.953850e-03	ci left: 3.292446e-01	ci right 3.302188e-01	k: 1180439	n:3580000
KS ci ratio: 7.839972e-01	ci left: 4.295327e-06	ci right 9.974871e-06	k: 24	n:3580000
NDUFS4   3580000 perm   5061 sec   (707 perm/sec)   p_kst 6.703911e-06   p_cons 3.297316e-01   p_joint 6.703911e-06

Joint ci ratio: 7.839972e-01	ci left: 4.283362e-06	ci right 9.947086e-06	k: 24	n:3590000
Cons ci ratio: 2.949715e-03	ci left: 3.292480e-01	ci right 3.302208e-01	k: 1183746	n:3590000
KS ci ratio: 7.839972e-01	ci left: 4.283362e-06	ci right 9.947086e-06	k: 24	n:3590000
NDUFS4   3590000 perm   5088 sec   (706 perm/sec)   p_kst 6.685237e-06   p_cons 3.297343e-01   p_joint 6.685237e-06

Joint ci ratio: 7.839972e-01	ci left: 4.271464e-06	ci right 9.919455e-06	k: 24	n:3600000
Cons ci ratio: 2.945575e-03	ci left: 3.292546e-01	ci right 3.302262e-01	k: 1187065	n:3600000
KS ci ratio: 7.839972e-01	ci left: 4.271464e-06	ci right 9.919455e-06	k: 24	n:3600000
NDUFS4   3600000 perm   5114 sec   (704 perm/sec)   p_kst 6.666667e-06   p_cons 3.297403e-01   p_joint 6.666667e-06

Joint ci ratio: 7.839972e-01	ci left: 4.259631e-06	ci right 9.891978e-06	k: 24	n:3610000
Cons ci ratio: 2.941326e-03	ci left: 3.292804e-01	ci right 3.302506e-01	k: 1190453	n:3610000
KS ci ratio: 7.839972e-01	ci left: 4.259631e-06	ci right 9.891978e-06	k: 24	n:3610000
NDUFS4   3610000 perm   5141 sec   (702 perm/sec)   p_kst 6.648199e-06   p_cons 3.297654e-01   p_joint 6.648199e-06

Joint ci ratio: 7.687724e-01	ci left: 4.469254e-06	ci right 1.019472e-05	k: 25	n:3620000
Cons ci ratio: 2.937192e-03	ci left: 3.292914e-01	ci right 3.302603e-01	k: 1193788	n:3620000
KS ci ratio: 7.687724e-01	ci left: 4.469254e-06	ci right 1.019472e-05	k: 25	n:3620000
NDUFS4   3620000 perm   5167 sec   (701 perm/sec)   p_kst 6.906077e-06   p_cons 3.297757e-01   p_joint 6.906077e-06

Joint ci ratio: 7.687724e-01	ci left: 4.456942e-06	ci right 1.016663e-05	k: 25	n:3630000
Cons ci ratio: 2.933168e-03	ci left: 3.292883e-01	ci right 3.302558e-01	k: 1197072	n:3630000
KS ci ratio: 7.687724e-01	ci left: 4.456942e-06	ci right 1.016663e-05	k: 25	n:3630000
NDUFS4   3630000 perm   5194 sec   (699 perm/sec)   p_kst 6.887052e-06   p_cons 3.297719e-01   p_joint 6.887052e-06

Joint ci ratio: 7.687724e-01	ci left: 4.444698e-06	ci right 1.013870e-05	k: 25	n:3640000
Cons ci ratio: 2.929114e-03	ci left: 3.292923e-01	ci right 3.302585e-01	k: 1200382	n:3640000
KS ci ratio: 7.687724e-01	ci left: 4.444698e-06	ci right 1.013870e-05	k: 25	n:3640000
NDUFS4   3640000 perm   5221 sec   (697 perm/sec)   p_kst 6.868132e-06   p_cons 3.297753e-01   p_joint 6.868132e-06

Joint ci ratio: 7.687724e-01	ci left: 4.432520e-06	ci right 1.011092e-05	k: 25	n:3650000
Cons ci ratio: 2.925080e-03	ci left: 3.292958e-01	ci right 3.302607e-01	k: 1203690	n:3650000
KS ci ratio: 7.687724e-01	ci left: 4.432520e-06	ci right 1.011092e-05	k: 25	n:3650000
NDUFS4   3650000 perm   5248 sec   (696 perm/sec)   p_kst 6.849315e-06   p_cons 3.297781e-01   p_joint 6.849315e-06

Joint ci ratio: 7.687724e-01	ci left: 4.420410e-06	ci right 1.008330e-05	k: 25	n:3660000
Cons ci ratio: 2.921142e-03	ci left: 3.292872e-01	ci right 3.302508e-01	k: 1206954	n:3660000
KS ci ratio: 7.687724e-01	ci left: 4.420410e-06	ci right 1.008330e-05	k: 25	n:3660000
NDUFS4   3660000 perm   5275 sec   (694 perm/sec)   p_kst 6.830601e-06   p_cons 3.297689e-01   p_joint 6.830601e-06

Joint ci ratio: 7.687724e-01	ci left: 4.408365e-06	ci right 1.005582e-05	k: 25	n:3670000
Cons ci ratio: 2.917079e-03	ci left: 3.293002e-01	ci right 3.302625e-01	k: 1210297	n:3670000
KS ci ratio: 7.687724e-01	ci left: 4.408365e-06	ci right 1.005582e-05	k: 25	n:3670000
NDUFS4   3670000 perm   5302 sec   (692 perm/sec)   p_kst 6.811989e-06   p_cons 3.297812e-01   p_joint 6.811989e-06

Joint ci ratio: 7.687724e-01	ci left: 4.396386e-06	ci right 1.002850e-05	k: 25	n:3680000
Cons ci ratio: 2.913006e-03	ci left: 3.293169e-01	ci right 3.302779e-01	k: 1213654	n:3680000
KS ci ratio: 7.687724e-01	ci left: 4.396386e-06	ci right 1.002850e-05	k: 25	n:3680000
NDUFS4   3680000 perm   5329 sec   (691 perm/sec)   p_kst 6.793478e-06   p_cons 3.297973e-01   p_joint 6.793478e-06

Joint ci ratio: 7.687724e-01	ci left: 4.384471e-06	ci right 1.000132e-05	k: 25	n:3690000
Cons ci ratio: 2.909035e-03	ci left: 3.293208e-01	ci right 3.302805e-01	k: 1216964	n:3690000
KS ci ratio: 7.687724e-01	ci left: 4.384471e-06	ci right 1.000132e-05	k: 25	n:3690000
NDUFS4   3690000 perm   5357 sec   (689 perm/sec)   p_kst 6.775068e-06   p_cons 3.298005e-01   p_joint 6.775068e-06

Joint ci ratio: 7.687724e-01	ci left: 4.372621e-06	ci right 9.974290e-06	k: 25	n:3700000
Cons ci ratio: 2.905117e-03	ci left: 3.293191e-01	ci right 3.302774e-01	k: 1220253	n:3700000
KS ci ratio: 7.687724e-01	ci left: 4.372621e-06	ci right 9.974290e-06	k: 25	n:3700000
NDUFS4   3700000 perm   5385 sec   (687 perm/sec)   p_kst 6.756757e-06   p_cons 3.297981e-01   p_joint 6.756757e-06

Joint ci ratio: 7.687725e-01	ci left: 4.360835e-06	ci right 9.947405e-06	k: 25	n:3710000
Cons ci ratio: 2.901215e-03	ci left: 3.293173e-01	ci right 3.302744e-01	k: 1223542	n:3710000
KS ci ratio: 7.687725e-01	ci left: 4.360835e-06	ci right 9.947405e-06	k: 25	n:3710000
NDUFS4   3710000 perm   5413 sec   (685 perm/sec)   p_kst 6.738544e-06   p_cons 3.297957e-01   p_joint 6.738544e-06

Joint ci ratio: 7.687725e-01	ci left: 4.349113e-06	ci right 9.920665e-06	k: 25	n:3720000
Cons ci ratio: 2.897294e-03	ci left: 3.293209e-01	ci right 3.302767e-01	k: 1226851	n:3720000
KS ci ratio: 7.687725e-01	ci left: 4.349113e-06	ci right 9.920665e-06	k: 25	n:3720000
NDUFS4   3720000 perm   5440 sec   (684 perm/sec)   p_kst 6.720430e-06   p_cons 3.297987e-01   p_joint 6.720430e-06

Joint ci ratio: 7.687725e-01	ci left: 4.337453e-06	ci right 9.894068e-06	k: 25	n:3730000
Cons ci ratio: 2.893269e-03	ci left: 3.293427e-01	ci right 3.302972e-01	k: 1230228	n:3730000
KS ci ratio: 7.687725e-01	ci left: 4.337453e-06	ci right 9.894068e-06	k: 25	n:3730000
NDUFS4   3730000 perm   5468 sec   (682 perm/sec)   p_kst 6.702413e-06   p_cons 3.298198e-01   p_joint 6.702413e-06

Joint ci ratio: 7.687725e-01	ci left: 4.325855e-06	ci right 9.867613e-06	k: 25	n:3740000
Cons ci ratio: 2.889516e-03	ci left: 3.293254e-01	ci right 3.302786e-01	k: 1233459	n:3740000
KS ci ratio: 7.687725e-01	ci left: 4.325855e-06	ci right 9.867613e-06	k: 25	n:3740000
NDUFS4   3740000 perm   5496 sec   (680 perm/sec)   p_kst 6.684492e-06   p_cons 3.298019e-01   p_joint 6.684492e-06

Joint ci ratio: 7.687725e-01	ci left: 4.314320e-06	ci right 9.841300e-06	k: 25	n:3750000
Cons ci ratio: 2.885519e-03	ci left: 3.293476e-01	ci right 3.302996e-01	k: 1236838	n:3750000
KS ci ratio: 7.687725e-01	ci left: 4.314320e-06	ci right 9.841300e-06	k: 25	n:3750000
NDUFS4   3750000 perm   5524 sec   (679 perm/sec)   p_kst 6.666667e-06   p_cons 3.298235e-01   p_joint 6.666667e-06

Joint ci ratio: 7.687725e-01	ci left: 4.302845e-06	ci right 9.815126e-06	k: 25	n:3760000
Cons ci ratio: 2.881659e-03	ci left: 3.293514e-01	ci right 3.303021e-01	k: 1240148	n:3760000
KS ci ratio: 7.687725e-01	ci left: 4.302845e-06	ci right 9.815126e-06	k: 25	n:3760000
NDUFS4   3760000 perm   5552 sec   (677 perm/sec)   p_kst 6.648936e-06   p_cons 3.298266e-01   p_joint 6.648936e-06

Joint ci ratio: 7.687725e-01	ci left: 4.291432e-06	ci right 9.789091e-06	k: 25	n:3770000
Cons ci ratio: 2.878036e-03	ci left: 3.293212e-01	ci right 3.302706e-01	k: 1243330	n:3770000
KS ci ratio: 7.687725e-01	ci left: 4.291432e-06	ci right 9.789091e-06	k: 25	n:3770000
NDUFS4   3770000 perm   5580 sec   (676 perm/sec)   p_kst 6.631300e-06   p_cons 3.297958e-01   p_joint 6.631300e-06

Joint ci ratio: 7.687725e-01	ci left: 4.280079e-06	ci right 9.763194e-06	k: 25	n:3780000
Cons ci ratio: 2.874323e-03	ci left: 3.293070e-01	ci right 3.302552e-01	k: 1246572	n:3780000
KS ci ratio: 7.687725e-01	ci left: 4.280079e-06	ci right 9.763194e-06	k: 25	n:3780000
NDUFS4   3780000 perm   5608 sec   (674 perm/sec)   p_kst 6.613757e-06   p_cons 3.297810e-01   p_joint 6.613757e-06

Joint ci ratio: 7.687725e-01	ci left: 4.268786e-06	ci right 9.737434e-06	k: 25	n:3790000
Cons ci ratio: 2.870514e-03	ci left: 3.293098e-01	ci right 3.302567e-01	k: 1249878	n:3790000
KS ci ratio: 7.687725e-01	ci left: 4.268786e-06	ci right 9.737434e-06	k: 25	n:3790000
NDUFS4   3790000 perm   5636 sec   (672 perm/sec)   p_kst 6.596306e-06   p_cons 3.297831e-01   p_joint 6.596306e-06

Joint ci ratio: 7.687725e-01	ci left: 4.257552e-06	ci right 9.711809e-06	k: 25	n:3800000
Cons ci ratio: 2.866716e-03	ci left: 3.293134e-01	ci right 3.302590e-01	k: 1253187	n:3800000
KS ci ratio: 7.687725e-01	ci left: 4.257552e-06	ci right 9.711809e-06	k: 25	n:3800000
NDUFS4   3800000 perm   5665 sec   (671 perm/sec)   p_kst 6.578947e-06   p_cons 3.297861e-01   p_joint 6.578947e-06

Joint ci ratio: 7.687725e-01	ci left: 4.246378e-06	ci right 9.686319e-06	k: 25	n:3810000
Cons ci ratio: 2.862976e-03	ci left: 3.293101e-01	ci right 3.302545e-01	k: 1256470	n:3810000
KS ci ratio: 7.687725e-01	ci left: 4.246378e-06	ci right 9.686319e-06	k: 25	n:3810000
NDUFS4   3810000 perm   5693 sec   (669 perm/sec)   p_kst 6.561680e-06   p_cons 3.297822e-01   p_joint 6.561680e-06

Joint ci ratio: 7.687725e-01	ci left: 4.235261e-06	ci right 9.660962e-06	k: 25	n:3820000
Cons ci ratio: 2.859131e-03	ci left: 3.293254e-01	ci right 3.302686e-01	k: 1259824	n:3820000
KS ci ratio: 7.687725e-01	ci left: 4.235261e-06	ci right 9.660962e-06	k: 25	n:3820000
NDUFS4   3820000 perm   5722 sec   (668 perm/sec)   p_kst 6.544503e-06   p_cons 3.297969e-01   p_joint 6.544503e-06

Joint ci ratio: 7.687725e-01	ci left: 4.224203e-06	ci right 9.635737e-06	k: 25	n:3830000
Cons ci ratio: 2.855506e-03	ci left: 3.293091e-01	ci right 3.302510e-01	k: 1263057	n:3830000
KS ci ratio: 7.687725e-01	ci left: 4.224203e-06	ci right 9.635737e-06	k: 25	n:3830000
NDUFS4   3830000 perm   5751 sec   (666 perm/sec)   p_kst 6.527415e-06   p_cons 3.297799e-01   p_joint 6.527415e-06

Joint ci ratio: 7.687725e-01	ci left: 4.213203e-06	ci right 9.610644e-06	k: 25	n:3840000
Cons ci ratio: 2.851862e-03	ci left: 3.292977e-01	ci right 3.302384e-01	k: 1266309	n:3840000
KS ci ratio: 7.687725e-01	ci left: 4.213203e-06	ci right 9.610644e-06	k: 25	n:3840000
NDUFS4   3840000 perm   5779 sec   (664 perm/sec)   p_kst 6.510417e-06   p_cons 3.297680e-01   p_joint 6.510417e-06

Joint ci ratio: 7.687726e-01	ci left: 4.202259e-06	ci right 9.585682e-06	k: 25	n:3850000
Cons ci ratio: 2.848206e-03	ci left: 3.292907e-01	ci right 3.302301e-01	k: 1269577	n:3850000
KS ci ratio: 7.687726e-01	ci left: 4.202259e-06	ci right 9.585682e-06	k: 25	n:3850000
NDUFS4   3850000 perm   5807 sec   (663 perm/sec)   p_kst 6.493506e-06   p_cons 3.297603e-01   p_joint 6.493506e-06

Joint ci ratio: 7.687726e-01	ci left: 4.191373e-06	ci right 9.560848e-06	k: 25	n:3860000
Cons ci ratio: 2.844647e-03	ci left: 3.292706e-01	ci right 3.302089e-01	k: 1272795	n:3860000
KS ci ratio: 7.687726e-01	ci left: 4.191373e-06	ci right 9.560848e-06	k: 25	n:3860000
NDUFS4   3860000 perm   5836 sec   (661 perm/sec)   p_kst 6.476684e-06   p_cons 3.297396e-01   p_joint 6.476684e-06

Joint ci ratio: 7.687726e-01	ci left: 4.180542e-06	ci right 9.536143e-06	k: 25	n:3870000
Cons ci ratio: 2.840995e-03	ci left: 3.292673e-01	ci right 3.302043e-01	k: 1276077	n:3870000
KS ci ratio: 7.687726e-01	ci left: 4.180542e-06	ci right 9.536143e-06	k: 25	n:3870000
NDUFS4   3870000 perm   5865 sec   (660 perm/sec)   p_kst 6.459948e-06   p_cons 3.297357e-01   p_joint 6.459948e-06

Joint ci ratio: 7.687726e-01	ci left: 4.169768e-06	ci right 9.511566e-06	k: 25	n:3880000
Cons ci ratio: 2.837325e-03	ci left: 3.292688e-01	ci right 3.302046e-01	k: 1279378	n:3880000
KS ci ratio: 7.687726e-01	ci left: 4.169768e-06	ci right 9.511566e-06	k: 25	n:3880000
NDUFS4   3880000 perm   5894 sec   (658 perm/sec)   p_kst 6.443299e-06   p_cons 3.297366e-01   p_joint 6.443299e-06

Joint ci ratio: 7.687726e-01	ci left: 4.159048e-06	ci right 9.487114e-06	k: 25	n:3890000
Cons ci ratio: 2.833950e-03	ci left: 3.292267e-01	ci right 3.301612e-01	k: 1282509	n:3890000
KS ci ratio: 7.687726e-01	ci left: 4.159048e-06	ci right 9.487114e-06	k: 25	n:3890000
NDUFS4   3890000 perm   5923 sec   (657 perm/sec)   p_kst 6.426735e-06   p_cons 3.296938e-01   p_joint 6.426735e-06

Joint ci ratio: 7.687726e-01	ci left: 4.148384e-06	ci right 9.462789e-06	k: 25	n:3900000
Cons ci ratio: 2.830331e-03	ci left: 3.292247e-01	ci right 3.301581e-01	k: 1285796	n:3900000
KS ci ratio: 7.687726e-01	ci left: 4.148384e-06	ci right 9.462789e-06	k: 25	n:3900000
NDUFS4   3900000 perm   5952 sec   (655 perm/sec)   p_kst 6.410256e-06   p_cons 3.296913e-01   p_joint 6.410256e-06

Joint ci ratio: 7.687726e-01	ci left: 4.137774e-06	ci right 9.438587e-06	k: 25	n:3910000
Cons ci ratio: 2.826611e-03	ci left: 3.292407e-01	ci right 3.301729e-01	k: 1289153	n:3910000
KS ci ratio: 7.687726e-01	ci left: 4.137774e-06	ci right 9.438587e-06	k: 25	n:3910000
NDUFS4   3910000 perm   5982 sec   (654 perm/sec)   p_kst 6.393862e-06   p_cons 3.297066e-01   p_joint 6.393862e-06

Joint ci ratio: 7.687726e-01	ci left: 4.127219e-06	ci right 9.414509e-06	k: 25	n:3920000
Cons ci ratio: 2.823082e-03	ci left: 3.292290e-01	ci right 3.301600e-01	k: 1292402	n:3920000
KS ci ratio: 7.687726e-01	ci left: 4.127219e-06	ci right 9.414509e-06	k: 25	n:3920000
NDUFS4   3920000 perm   6011 sec   (652 perm/sec)   p_kst 6.377551e-06   p_cons 3.296944e-01   p_joint 6.377551e-06

Joint ci ratio: 7.687726e-01	ci left: 4.116717e-06	ci right 9.390554e-06	k: 25	n:3930000
Cons ci ratio: 2.819486e-03	ci left: 3.292299e-01	ci right 3.301597e-01	k: 1295700	n:3930000
KS ci ratio: 7.687726e-01	ci left: 4.116717e-06	ci right 9.390554e-06	k: 25	n:3930000
NDUFS4   3930000 perm   6040 sec   (651 perm/sec)   p_kst 6.361323e-06   p_cons 3.296947e-01   p_joint 6.361323e-06

Joint ci ratio: 7.687726e-01	ci left: 4.106269e-06	ci right 9.366720e-06	k: 25	n:3940000
Cons ci ratio: 2.816015e-03	ci left: 3.292132e-01	ci right 3.301418e-01	k: 1298929	n:3940000
KS ci ratio: 7.687726e-01	ci left: 4.106269e-06	ci right 9.366720e-06	k: 25	n:3940000
NDUFS4   3940000 perm   6069 sec   (649 perm/sec)   p_kst 6.345178e-06   p_cons 3.296774e-01   p_joint 6.345178e-06

Joint ci ratio: 7.687726e-01	ci left: 4.095873e-06	ci right 9.343007e-06	k: 25	n:3950000
Cons ci ratio: 2.812421e-03	ci left: 3.292182e-01	ci right 3.301456e-01	k: 1302243	n:3950000
KS ci ratio: 7.687726e-01	ci left: 4.095873e-06	ci right 9.343007e-06	k: 25	n:3950000
NDUFS4   3950000 perm   6098 sec   (648 perm/sec)   p_kst 6.329114e-06   p_cons 3.296818e-01   p_joint 6.329114e-06

Joint ci ratio: 5.599965e-01	ci left: 8.937238e-06	ci right 1.607094e-05	k: 48	n:3960000
Cons ci ratio: 2.808776e-03	ci left: 3.292332e-01	ci right 3.301595e-01	k: 1305597	n:3960000
KS ci ratio: 7.544017e-01	ci left: 4.288909e-06	ci right 9.620193e-06	k: 26	n:3960000
NDUFS4   3960000 perm   6128 sec   (646 perm/sec)   p_kst 6.565657e-06   p_cons 3.296962e-01   p_joint 1.212121e-05

Joint ci ratio: 5.599965e-01	ci left: 8.914726e-06	ci right 1.603046e-05	k: 48	n:3970000
Cons ci ratio: 2.805027e-03	ci left: 3.292668e-01	ci right 3.301919e-01	k: 1309025	n:3970000
KS ci ratio: 7.544017e-01	ci left: 4.278106e-06	ci right 9.595961e-06	k: 26	n:3970000
NDUFS4   3970000 perm   6157 sec   (645 perm/sec)   p_kst 6.549118e-06   p_cons 3.297292e-01   p_joint 1.209068e-05

Joint ci ratio: 5.543682e-01	ci left: 9.108172e-06	ci right 1.627650e-05	k: 49	n:3980000
Cons ci ratio: 2.801539e-03	ci left: 3.292613e-01	ci right 3.301852e-01	k: 1312298	n:3980000
KS ci ratio: 7.544017e-01	ci left: 4.267357e-06	ci right 9.571851e-06	k: 26	n:3980000
NDUFS4   3980000 perm   6187 sec   (643 perm/sec)   p_kst 6.532663e-06   p_cons 3.297231e-01   p_joint 1.231156e-05

Joint ci ratio: 5.543682e-01	ci left: 9.085344e-06	ci right 1.623571e-05	k: 49	n:3990000
Cons ci ratio: 2.798019e-03	ci left: 3.292630e-01	ci right 3.301858e-01	k: 1315600	n:3990000
KS ci ratio: 7.544017e-01	ci left: 4.256662e-06	ci right 9.547861e-06	k: 26	n:3990000
NDUFS4   3990000 perm   6216 sec   (642 perm/sec)   p_kst 6.516291e-06   p_cons 3.297243e-01   p_joint 1.228070e-05

Joint ci ratio: 5.543682e-01	ci left: 9.062631e-06	ci right 1.619512e-05	k: 49	n:4000000
Cons ci ratio: 2.794459e-03	ci left: 3.292730e-01	ci right 3.301947e-01	k: 1318935	n:4000000
KS ci ratio: 7.544017e-01	ci left: 4.246020e-06	ci right 9.523992e-06	k: 26	n:4000000
NDUFS4   4000000 perm   6246 sec   (640 perm/sec)   p_kst 6.500000e-06   p_cons 3.297337e-01   p_joint 1.225000e-05

Joint ci ratio: 5.543682e-01	ci left: 9.040031e-06	ci right 1.615473e-05	k: 49	n:4010000
Cons ci ratio: 2.790884e-03	ci left: 3.292877e-01	ci right 3.302083e-01	k: 1322289	n:4010000
KS ci ratio: 7.544017e-01	ci left: 4.235431e-06	ci right 9.500241e-06	k: 26	n:4010000
NDUFS4   4010000 perm   6275 sec   (639 perm/sec)   p_kst 6.483791e-06   p_cons 3.297479e-01   p_joint 1.221945e-05

Joint ci ratio: 5.543682e-01	ci left: 9.017543e-06	ci right 1.611455e-05	k: 49	n:4020000
Cons ci ratio: 2.787292e-03	ci left: 3.293071e-01	ci right 3.302265e-01	k: 1325662	n:4020000
KS ci ratio: 7.544017e-01	ci left: 4.224896e-06	ci right 9.476609e-06	k: 26	n:4020000
NDUFS4   4020000 perm   6305 sec   (638 perm/sec)   p_kst 6.467662e-06   p_cons 3.297667e-01   p_joint 1.218905e-05

Joint ci ratio: 5.543682e-01	ci left: 8.995167e-06	ci right 1.607456e-05	k: 49	n:4030000
Cons ci ratio: 2.783872e-03	ci left: 3.293013e-01	ci right 3.302195e-01	k: 1328934	n:4030000
KS ci ratio: 7.544017e-01	ci left: 4.214412e-06	ci right 9.453094e-06	k: 26	n:4030000
NDUFS4   4030000 perm   6335 sec   (636 perm/sec)   p_kst 6.451613e-06   p_cons 3.297603e-01   p_joint 1.215881e-05

Joint ci ratio: 5.489063e-01	ci left: 9.185896e-06	ci right 1.631649e-05	k: 50	n:4040000
Cons ci ratio: 2.780336e-03	ci left: 3.293158e-01	ci right 3.302329e-01	k: 1332288	n:4040000
KS ci ratio: 7.408077e-01	ci left: 4.404255e-06	ci right 9.723644e-06	k: 27	n:4040000
NDUFS4   4040000 perm   6365 sec   (635 perm/sec)   p_kst 6.683168e-06   p_cons 3.297743e-01   p_joint 1.237624e-05

Joint ci ratio: 5.489063e-01	ci left: 9.163214e-06	ci right 1.627621e-05	k: 50	n:4050000
Cons ci ratio: 2.777004e-03	ci left: 3.293002e-01	ci right 3.302161e-01	k: 1335520	n:4050000
KS ci ratio: 7.408077e-01	ci left: 4.393380e-06	ci right 9.699635e-06	k: 27	n:4050000
NDUFS4   4050000 perm   6396 sec   (633 perm/sec)   p_kst 6.666667e-06   p_cons 3.297580e-01   p_joint 1.234568e-05

Joint ci ratio: 5.436026e-01	ci left: 9.352933e-06	ci right 1.651612e-05	k: 51	n:4060000
Cons ci ratio: 2.773550e-03	ci left: 3.293058e-01	ci right 3.302206e-01	k: 1338838	n:4060000
KS ci ratio: 7.279230e-01	ci left: 4.582713e-06	ci right 9.967422e-06	k: 28	n:4060000
NDUFS4   4060000 perm   6425 sec   (632 perm/sec)   p_kst 6.896552e-06   p_cons 3.297631e-01   p_joint 1.256158e-05

Joint ci ratio: 5.436027e-01	ci left: 9.329952e-06	ci right 1.647554e-05	k: 51	n:4070000
Cons ci ratio: 2.770098e-03	ci left: 3.293130e-01	ci right 3.302268e-01	k: 1342163	n:4070000
KS ci ratio: 7.279230e-01	ci left: 4.571454e-06	ci right 9.942932e-06	k: 28	n:4070000
NDUFS4   4070000 perm   6455 sec   (630 perm/sec)   p_kst 6.879607e-06   p_cons 3.297698e-01   p_joint 1.253071e-05

Joint ci ratio: 5.436027e-01	ci left: 9.307085e-06	ci right 1.643516e-05	k: 51	n:4080000
Cons ci ratio: 2.766726e-03	ci left: 3.293098e-01	ci right 3.302224e-01	k: 1345445	n:4080000
KS ci ratio: 7.279230e-01	ci left: 4.560249e-06	ci right 9.918562e-06	k: 28	n:4080000
NDUFS4   4080000 perm   6485 sec   (629 perm/sec)   p_kst 6.862745e-06   p_cons 3.297659e-01   p_joint 1.250000e-05

Joint ci ratio: 5.436027e-01	ci left: 9.284329e-06	ci right 1.639498e-05	k: 51	n:4090000
Cons ci ratio: 2.763365e-03	ci left: 3.293065e-01	ci right 3.302180e-01	k: 1348727	n:4090000
KS ci ratio: 7.279231e-01	ci left: 4.549099e-06	ci right 9.894312e-06	k: 28	n:4090000
NDUFS4   4090000 perm   6515 sec   (628 perm/sec)   p_kst 6.845966e-06   p_cons 3.297621e-01   p_joint 1.246944e-05

Joint ci ratio: 5.436027e-01	ci left: 9.261684e-06	ci right 1.635499e-05	k: 51	n:4100000
Cons ci ratio: 2.760114e-03	ci left: 3.292876e-01	ci right 3.301980e-01	k: 1351945	n:4100000
KS ci ratio: 7.279231e-01	ci left: 4.538004e-06	ci right 9.870179e-06	k: 28	n:4100000
NDUFS4   4100000 perm   6545 sec   (626 perm/sec)   p_kst 6.829268e-06   p_cons 3.297427e-01   p_joint 1.243902e-05

Joint ci ratio: 5.436027e-01	ci left: 9.239150e-06	ci right 1.631519e-05	k: 51	n:4110000
Cons ci ratio: 2.756711e-03	ci left: 3.292951e-01	ci right 3.302044e-01	k: 1355271	n:4110000
KS ci ratio: 7.279231e-01	ci left: 4.526962e-06	ci right 9.846164e-06	k: 28	n:4110000
NDUFS4   4110000 perm   6576 sec   (625 perm/sec)   p_kst 6.812652e-06   p_cons 3.297496e-01   p_joint 1.240876e-05

Joint ci ratio: 5.436027e-01	ci left: 9.216725e-06	ci right 1.627559e-05	k: 51	n:4120000
Cons ci ratio: 2.753473e-03	ci left: 3.292781e-01	ci right 3.301862e-01	k: 1358496	n:4120000
KS ci ratio: 7.279231e-01	ci left: 4.515975e-06	ci right 9.822266e-06	k: 28	n:4120000
NDUFS4   4120000 perm   6607 sec   (624 perm/sec)   p_kst 6.796117e-06   p_cons 3.297320e-01   p_joint 1.237864e-05

Joint ci ratio: 5.436027e-01	ci left: 9.194408e-06	ci right 1.623619e-05	k: 51	n:4130000
Cons ci ratio: 2.750048e-03	ci left: 3.292931e-01	ci right 3.302001e-01	k: 1361853	n:4130000
KS ci ratio: 7.279231e-01	ci left: 4.505040e-06	ci right 9.798483e-06	k: 28	n:4130000
NDUFS4   4130000 perm   6637 sec   (622 perm/sec)   p_kst 6.779661e-06   p_cons 3.297465e-01   p_joint 1.234867e-05

Joint ci ratio: 5.436027e-01	ci left: 9.172199e-06	ci right 1.619697e-05	k: 51	n:4140000
Cons ci ratio: 2.746742e-03	ci left: 3.292909e-01	ci right 3.301968e-01	k: 1365139	n:4140000
KS ci ratio: 7.279231e-01	ci left: 4.494158e-06	ci right 9.774815e-06	k: 28	n:4140000
NDUFS4   4140000 perm   6668 sec   (621 perm/sec)   p_kst 6.763285e-06   p_cons 3.297437e-01   p_joint 1.231884e-05

Joint ci ratio: 5.436027e-01	ci left: 9.150098e-06	ci right 1.615794e-05	k: 51	n:4150000
Cons ci ratio: 2.743507e-03	ci left: 3.292790e-01	ci right 3.301839e-01	k: 1368385	n:4150000
KS ci ratio: 7.279231e-01	ci left: 4.483329e-06	ci right 9.751261e-06	k: 28	n:4150000
NDUFS4   4150000 perm   6699 sec   (619 perm/sec)   p_kst 6.746988e-06   p_cons 3.297313e-01   p_joint 1.228916e-05

Joint ci ratio: 5.436027e-01	ci left: 9.128102e-06	ci right 1.611910e-05	k: 51	n:4160000
Cons ci ratio: 2.740194e-03	ci left: 3.292819e-01	ci right 3.301857e-01	k: 1371692	n:4160000
KS ci ratio: 7.279231e-01	ci left: 4.472552e-06	ci right 9.727821e-06	k: 28	n:4160000
NDUFS4   4160000 perm   6730 sec   (618 perm/sec)   p_kst 6.730769e-06   p_cons 3.297337e-01   p_joint 1.225962e-05

Joint ci ratio: 5.436027e-01	ci left: 9.106212e-06	ci right 1.608044e-05	k: 51	n:4170000
Cons ci ratio: 2.736878e-03	ci left: 3.292869e-01	ci right 3.301896e-01	k: 1375008	n:4170000
KS ci ratio: 7.279231e-01	ci left: 4.461826e-06	ci right 9.704493e-06	k: 28	n:4170000
NDUFS4   4170000 perm   6761 sec   (617 perm/sec)   p_kst 6.714628e-06   p_cons 3.297381e-01   p_joint 1.223022e-05

Joint ci ratio: 5.436027e-01	ci left: 9.084427e-06	ci right 1.604197e-05	k: 51	n:4180000
Cons ci ratio: 2.733653e-03	ci left: 3.292792e-01	ci right 3.301808e-01	k: 1378271	n:4180000
KS ci ratio: 7.279231e-01	ci left: 4.451152e-06	ci right 9.681276e-06	k: 28	n:4180000
NDUFS4   4180000 perm   6792 sec   (615 perm/sec)   p_kst 6.698565e-06   p_cons 3.297299e-01   p_joint 1.220096e-05

Joint ci ratio: 5.436028e-01	ci left: 9.062746e-06	ci right 1.600369e-05	k: 51	n:4190000
Cons ci ratio: 2.730376e-03	ci left: 3.292818e-01	ci right 3.301824e-01	k: 1381577	n:4190000
KS ci ratio: 7.279231e-01	ci left: 4.440529e-06	ci right 9.658171e-06	k: 28	n:4190000
NDUFS4   4190000 perm   6823 sec   (614 perm/sec)   p_kst 6.682578e-06   p_cons 3.297320e-01   p_joint 1.217184e-05

Joint ci ratio: 5.436028e-01	ci left: 9.041168e-06	ci right 1.596558e-05	k: 51	n:4200000
Cons ci ratio: 2.727085e-03	ci left: 3.292887e-01	ci right 3.301882e-01	k: 1384901	n:4200000
KS ci ratio: 7.279231e-01	ci left: 4.429956e-06	ci right 9.635175e-06	k: 28	n:4200000
NDUFS4   4200000 perm   6854 sec   (613 perm/sec)   p_kst 6.666667e-06   p_cons 3.297383e-01   p_joint 1.214286e-05

Joint ci ratio: 5.436028e-01	ci left: 9.019692e-06	ci right 1.592766e-05	k: 51	n:4210000
Cons ci ratio: 2.723950e-03	ci left: 3.292721e-01	ci right 3.301704e-01	k: 1388126	n:4210000
KS ci ratio: 7.279231e-01	ci left: 4.419434e-06	ci right 9.612289e-06	k: 28	n:4210000
NDUFS4   4210000 perm   6885 sec   (611 perm/sec)   p_kst 6.650831e-06   p_cons 3.297211e-01   p_joint 1.211401e-05

Joint ci ratio: 5.436028e-01	ci left: 8.998318e-06	ci right 1.588992e-05	k: 51	n:4220000
Cons ci ratio: 2.720768e-03	ci left: 3.292650e-01	ci right 3.301623e-01	k: 1391391	n:4220000
KS ci ratio: 7.279231e-01	ci left: 4.408961e-06	ci right 9.589511e-06	k: 28	n:4220000
NDUFS4   4220000 perm   6917 sec   (610 perm/sec)   p_kst 6.635071e-06   p_cons 3.297135e-01   p_joint 1.208531e-05

Joint ci ratio: 5.436028e-01	ci left: 8.977046e-06	ci right 1.585235e-05	k: 51	n:4230000
Cons ci ratio: 2.717602e-03	ci left: 3.292570e-01	ci right 3.301532e-01	k: 1394652	n:4230000
KS ci ratio: 7.279231e-01	ci left: 4.398538e-06	ci right 9.566841e-06	k: 28	n:4230000
NDUFS4   4230000 perm   6948 sec   (609 perm/sec)   p_kst 6.619385e-06   p_cons 3.297050e-01   p_joint 1.205674e-05

Joint ci ratio: 5.436028e-01	ci left: 8.955874e-06	ci right 1.581497e-05	k: 51	n:4240000
Cons ci ratio: 2.714502e-03	ci left: 3.292403e-01	ci right 3.301354e-01	k: 1397876	n:4240000
KS ci ratio: 7.279232e-01	ci left: 4.388164e-06	ci right 9.544277e-06	k: 28	n:4240000
NDUFS4   4240000 perm   6980 sec   (607 perm/sec)   p_kst 6.603774e-06   p_cons 3.296877e-01   p_joint 1.202830e-05

Joint ci ratio: 5.436028e-01	ci left: 8.934801e-06	ci right 1.577775e-05	k: 51	n:4250000
Cons ci ratio: 2.711385e-03	ci left: 3.292279e-01	ci right 3.301220e-01	k: 1401118	n:4250000
KS ci ratio: 7.279232e-01	ci left: 4.377839e-06	ci right 9.521820e-06	k: 28	n:4250000
NDUFS4   4250000 perm   7011 sec   (606 perm/sec)   p_kst 6.588235e-06   p_cons 3.296748e-01   p_joint 1.200000e-05

Joint ci ratio: 5.436028e-01	ci left: 8.913827e-06	ci right 1.574072e-05	k: 51	n:4260000
Cons ci ratio: 2.708245e-03	ci left: 3.292212e-01	ci right 3.301142e-01	k: 1404384	n:4260000
KS ci ratio: 7.279232e-01	ci left: 4.367562e-06	ci right 9.499469e-06	k: 28	n:4260000
NDUFS4   4260000 perm   7042 sec   (605 perm/sec)   p_kst 6.572770e-06   p_cons 3.296676e-01   p_joint 1.197183e-05

Joint ci ratio: 5.436028e-01	ci left: 8.892952e-06	ci right 1.570385e-05	k: 51	n:4270000
Cons ci ratio: 2.705110e-03	ci left: 3.292155e-01	ci right 3.301075e-01	k: 1407654	n:4270000
KS ci ratio: 7.279232e-01	ci left: 4.357334e-06	ci right 9.477222e-06	k: 28	n:4270000
NDUFS4   4270000 perm   7073 sec   (604 perm/sec)   p_kst 6.557377e-06   p_cons 3.296614e-01   p_joint 1.194379e-05

Joint ci ratio: 5.436028e-01	ci left: 8.872174e-06	ci right 1.566716e-05	k: 51	n:4280000
Cons ci ratio: 2.701918e-03	ci left: 3.292210e-01	ci right 3.301119e-01	k: 1410972	n:4280000
KS ci ratio: 7.279232e-01	ci left: 4.347153e-06	ci right 9.455079e-06	k: 28	n:4280000
NDUFS4   4280000 perm   7105 sec   (602 perm/sec)   p_kst 6.542056e-06   p_cons 3.296664e-01   p_joint 1.191589e-05

Joint ci ratio: 5.436028e-01	ci left: 8.851493e-06	ci right 1.563064e-05	k: 51	n:4290000
Cons ci ratio: 2.698735e-03	ci left: 3.292267e-01	ci right 3.301166e-01	k: 1414291	n:4290000
KS ci ratio: 7.279232e-01	ci left: 4.337020e-06	ci right 9.433039e-06	k: 28	n:4290000
NDUFS4   4290000 perm   7137 sec   (601 perm/sec)   p_kst 6.526807e-06   p_cons 3.296716e-01   p_joint 1.188811e-05

Joint ci ratio: 5.436028e-01	ci left: 8.830908e-06	ci right 1.559429e-05	k: 51	n:4300000
Cons ci ratio: 2.695558e-03	ci left: 3.292333e-01	ci right 3.301222e-01	k: 1417614	n:4300000
KS ci ratio: 7.279232e-01	ci left: 4.326934e-06	ci right 9.411102e-06	k: 28	n:4300000
NDUFS4   4300000 perm   7168 sec   (600 perm/sec)   p_kst 6.511628e-06   p_cons 3.296777e-01   p_joint 1.186047e-05

Joint ci ratio: 5.436028e-01	ci left: 8.810418e-06	ci right 1.555811e-05	k: 51	n:4310000
Cons ci ratio: 2.692446e-03	ci left: 3.292311e-01	ci right 3.301190e-01	k: 1420899	n:4310000
KS ci ratio: 7.279232e-01	ci left: 4.316894e-06	ci right 9.389266e-06	k: 28	n:4310000
NDUFS4   4310000 perm   7200 sec   (599 perm/sec)   p_kst 6.496520e-06   p_cons 3.296749e-01   p_joint 1.183295e-05

Joint ci ratio: 5.436029e-01	ci left: 8.790024e-06	ci right 1.552210e-05	k: 51	n:4320000
Cons ci ratio: 2.689464e-03	ci left: 3.292093e-01	ci right 3.300961e-01	k: 1424099	n:4320000
KS ci ratio: 7.279232e-01	ci left: 4.306902e-06	ci right 9.367532e-06	k: 28	n:4320000
NDUFS4   4320000 perm   7232 sec   (597 perm/sec)   p_kst 6.481481e-06   p_cons 3.296525e-01   p_joint 1.180556e-05

Joint ci ratio: 5.436029e-01	ci left: 8.769723e-06	ci right 1.548625e-05	k: 51	n:4330000
Cons ci ratio: 2.686308e-03	ci left: 3.292177e-01	ci right 3.301035e-01	k: 1427430	n:4330000
KS ci ratio: 7.279232e-01	ci left: 4.296955e-06	ci right 9.345898e-06	k: 28	n:4330000
NDUFS4   4330000 perm   7264 sec   (596 perm/sec)   p_kst 6.466513e-06   p_cons 3.296605e-01   p_joint 1.177829e-05

Joint ci ratio: 5.436029e-01	ci left: 8.749517e-06	ci right 1.545057e-05	k: 51	n:4340000
Cons ci ratio: 2.683218e-03	ci left: 3.292172e-01	ci right 3.301019e-01	k: 1430722	n:4340000
KS ci ratio: 7.279232e-01	ci left: 4.287054e-06	ci right 9.324364e-06	k: 28	n:4340000
NDUFS4   4340000 perm   7295 sec   (595 perm/sec)   p_kst 6.451613e-06   p_cons 3.296594e-01   p_joint 1.175115e-05

Joint ci ratio: 5.436029e-01	ci left: 8.729403e-06	ci right 1.541505e-05	k: 51	n:4350000
Cons ci ratio: 2.680159e-03	ci left: 3.292132e-01	ci right 3.300969e-01	k: 1433999	n:4350000
KS ci ratio: 7.279232e-01	ci left: 4.277199e-06	ci right 9.302928e-06	k: 28	n:4350000
NDUFS4   4350000 perm   7327 sec   (594 perm/sec)   p_kst 6.436782e-06   p_cons 3.296549e-01   p_joint 1.172414e-05

Joint ci ratio: 5.599968e-01	ci left: 8.117307e-06	ci right 1.459654e-05	k: 48	n:4360000
Cons ci ratio: 2.677104e-03	ci left: 3.292104e-01	ci right 3.300931e-01	k: 1437281	n:4360000
KS ci ratio: 7.279232e-01	ci left: 4.267389e-06	ci right 9.281591e-06	k: 28	n:4360000
NDUFS4   4360000 perm   7359 sec   (592 perm/sec)   p_kst 6.422018e-06   p_cons 3.296516e-01   p_joint 1.100917e-05

Joint ci ratio: 5.543685e-01	ci left: 8.295313e-06	ci right 1.482391e-05	k: 49	n:4370000
Cons ci ratio: 2.674044e-03	ci left: 3.292101e-01	ci right 3.300918e-01	k: 1440574	n:4370000
KS ci ratio: 7.156883e-01	ci left: 4.444342e-06	ci right 9.530613e-06	k: 29	n:4370000
NDUFS4   4370000 perm   7391 sec   (591 perm/sec)   p_kst 6.636156e-06   p_cons 3.296508e-01   p_joint 1.121281e-05

Joint ci ratio: 5.543685e-01	ci left: 8.276374e-06	ci right 1.479006e-05	k: 49	n:4380000
Cons ci ratio: 2.670936e-03	ci left: 3.292196e-01	ci right 3.301003e-01	k: 1443910	n:4380000
KS ci ratio: 7.156883e-01	ci left: 4.434195e-06	ci right 9.508853e-06	k: 29	n:4380000
NDUFS4   4380000 perm   7424 sec   (590 perm/sec)   p_kst 6.621005e-06   p_cons 3.296598e-01   p_joint 1.118721e-05

Joint ci ratio: 5.543685e-01	ci left: 8.257521e-06	ci right 1.475637e-05	k: 49	n:4390000
Cons ci ratio: 2.667850e-03	ci left: 3.292270e-01	ci right 3.301067e-01	k: 1447237	n:4390000
KS ci ratio: 7.156883e-01	ci left: 4.424094e-06	ci right 9.487193e-06	k: 29	n:4390000
NDUFS4   4390000 perm   7456 sec   (589 perm/sec)   p_kst 6.605923e-06   p_cons 3.296667e-01   p_joint 1.116173e-05

Joint ci ratio: 5.543685e-01	ci left: 8.238754e-06	ci right 1.472284e-05	k: 49	n:4400000
Cons ci ratio: 2.664816e-03	ci left: 3.292276e-01	ci right 3.301063e-01	k: 1450534	n:4400000
KS ci ratio: 7.156883e-01	ci left: 4.414040e-06	ci right 9.465631e-06	k: 29	n:4400000
NDUFS4   4400000 perm   7488 sec   (588 perm/sec)   p_kst 6.590909e-06   p_cons 3.296668e-01   p_joint 1.113636e-05

Joint ci ratio: 5.543685e-01	ci left: 8.220072e-06	ci right 1.468945e-05	k: 49	n:4410000
Cons ci ratio: 2.661849e-03	ci left: 3.292189e-01	ci right 3.300966e-01	k: 1453790	n:4410000
KS ci ratio: 7.156883e-01	ci left: 4.404030e-06	ci right 9.444167e-06	k: 29	n:4410000
NDUFS4   4410000 perm   7521 sec   (586 perm/sec)   p_kst 6.575964e-06   p_cons 3.296576e-01   p_joint 1.111111e-05

Joint ci ratio: 5.543685e-01	ci left: 8.201475e-06	ci right 1.465622e-05	k: 49	n:4420000
Cons ci ratio: 2.658877e-03	ci left: 3.292124e-01	ci right 3.300891e-01	k: 1457056	n:4420000
KS ci ratio: 7.156883e-01	ci left: 4.394067e-06	ci right 9.422800e-06	k: 29	n:4420000
NDUFS4   4420000 perm   7553 sec   (585 perm/sec)   p_kst 6.561086e-06   p_cons 3.296507e-01   p_joint 1.108597e-05

Joint ci ratio: 5.543685e-01	ci left: 8.182961e-06	ci right 1.462313e-05	k: 49	n:4430000
Cons ci ratio: 2.655798e-03	ci left: 3.292257e-01	ci right 3.301014e-01	k: 1460409	n:4430000
KS ci ratio: 7.156883e-01	ci left: 4.384148e-06	ci right 9.401530e-06	k: 29	n:4430000
NDUFS4   4430000 perm   7586 sec   (584 perm/sec)   p_kst 6.546275e-06   p_cons 3.296634e-01   p_joint 1.106095e-05

Joint ci ratio: 5.543685e-01	ci left: 8.164531e-06	ci right 1.459020e-05	k: 49	n:4440000
Cons ci ratio: 2.652850e-03	ci left: 3.292188e-01	ci right 3.300936e-01	k: 1463673	n:4440000
KS ci ratio: 7.156883e-01	ci left: 4.374273e-06	ci right 9.380355e-06	k: 29	n:4440000
NDUFS4   4440000 perm   7619 sec   (583 perm/sec)   p_kst 6.531532e-06   p_cons 3.296561e-01   p_joint 1.103604e-05

Joint ci ratio: 5.543685e-01	ci left: 8.146184e-06	ci right 1.455741e-05	k: 49	n:4450000
Cons ci ratio: 2.649774e-03	ci left: 3.292349e-01	ci right 3.301087e-01	k: 1467039	n:4450000
KS ci ratio: 7.156883e-01	ci left: 4.364444e-06	ci right 9.359276e-06	k: 29	n:4450000
NDUFS4   4450000 perm   7652 sec   (582 perm/sec)   p_kst 6.516854e-06   p_cons 3.296717e-01   p_joint 1.101124e-05

Joint ci ratio: 5.543685e-01	ci left: 8.127919e-06	ci right 1.452477e-05	k: 49	n:4460000
Cons ci ratio: 2.646773e-03	ci left: 3.292402e-01	ci right 3.301130e-01	k: 1470357	n:4460000
KS ci ratio: 7.156883e-01	ci left: 4.354658e-06	ci right 9.338291e-06	k: 29	n:4460000
NDUFS4   4460000 perm   7685 sec   (580 perm/sec)   p_kst 6.502242e-06   p_cons 3.296765e-01   p_joint 1.098655e-05

Joint ci ratio: 5.543686e-01	ci left: 8.109735e-06	ci right 1.449228e-05	k: 49	n:4470000
Cons ci ratio: 2.643690e-03	ci left: 3.292608e-01	ci right 3.301327e-01	k: 1473744	n:4470000
KS ci ratio: 7.156883e-01	ci left: 4.344916e-06	ci right 9.317400e-06	k: 29	n:4470000
NDUFS4   4470000 perm   7719 sec   (579 perm/sec)   p_kst 6.487696e-06   p_cons 3.296966e-01   p_joint 1.096197e-05

Joint ci ratio: 5.717877e-01	ci left: 7.517371e-06	ci right 1.369586e-05	k: 46	n:4480000
Cons ci ratio: 2.640763e-03	ci left: 3.292571e-01	ci right 3.301279e-01	k: 1477022	n:4480000
KS ci ratio: 7.156883e-01	ci left: 4.335217e-06	ci right 9.296602e-06	k: 29	n:4480000
NDUFS4   4480000 perm   7752 sec   (578 perm/sec)   p_kst 6.473214e-06   p_cons 3.296924e-01   p_joint 1.026786e-05

Joint ci ratio: 5.717877e-01	ci left: 7.500629e-06	ci right 1.366536e-05	k: 46	n:4490000
Cons ci ratio: 2.637868e-03	ci left: 3.292496e-01	ci right 3.301195e-01	k: 1480283	n:4490000
KS ci ratio: 7.156883e-01	ci left: 4.325562e-06	ci right 9.275897e-06	k: 29	n:4490000
NDUFS4   4490000 perm   7784 sec   (577 perm/sec)   p_kst 6.458797e-06   p_cons 3.296844e-01   p_joint 1.024499e-05

Joint ci ratio: 5.717877e-01	ci left: 7.483961e-06	ci right 1.363499e-05	k: 46	n:4500000
Cons ci ratio: 2.634933e-03	ci left: 3.292505e-01	ci right 3.301195e-01	k: 1483582	n:4500000
KS ci ratio: 7.156883e-01	ci left: 4.315950e-06	ci right 9.255284e-06	k: 29	n:4500000
NDUFS4   4500000 perm   7817 sec   (576 perm/sec)   p_kst 6.444444e-06   p_cons 3.296849e-01   p_joint 1.022222e-05

Joint ci ratio: 5.717877e-01	ci left: 7.467367e-06	ci right 1.360476e-05	k: 46	n:4510000
Cons ci ratio: 2.632035e-03	ci left: 3.292469e-01	ci right 3.301148e-01	k: 1486860	n:4510000
KS ci ratio: 7.156883e-01	ci left: 4.306380e-06	ci right 9.234763e-06	k: 29	n:4510000
NDUFS4   4510000 perm   7851 sec   (574 perm/sec)   p_kst 6.430155e-06   p_cons 3.296807e-01   p_joint 1.019956e-05

Joint ci ratio: 5.717877e-01	ci left: 7.450846e-06	ci right 1.357466e-05	k: 46	n:4520000
Cons ci ratio: 2.629151e-03	ci left: 3.292425e-01	ci right 3.301095e-01	k: 1490135	n:4520000
KS ci ratio: 7.156884e-01	ci left: 4.296853e-06	ci right 9.214332e-06	k: 29	n:4520000
NDUFS4   4520000 perm   7884 sec   (573 perm/sec)   p_kst 6.415929e-06   p_cons 3.296759e-01   p_joint 1.017699e-05

Joint ci ratio: 5.717877e-01	ci left: 7.434398e-06	ci right 1.354469e-05	k: 46	n:4530000
Cons ci ratio: 2.626168e-03	ci left: 3.292563e-01	ci right 3.301223e-01	k: 1493492	n:4530000
KS ci ratio: 7.156884e-01	ci left: 4.287367e-06	ci right 9.193991e-06	k: 29	n:4530000
NDUFS4   4530000 perm   7918 sec   (572 perm/sec)   p_kst 6.401766e-06   p_cons 3.296892e-01   p_joint 1.015453e-05

Joint ci ratio: 5.717877e-01	ci left: 7.418023e-06	ci right 1.351486e-05	k: 46	n:4540000
Cons ci ratio: 2.623222e-03	ci left: 3.292656e-01	ci right 3.301307e-01	k: 1496829	n:4540000
KS ci ratio: 7.156884e-01	ci left: 4.277924e-06	ci right 9.173740e-06	k: 29	n:4540000
NDUFS4   4540000 perm   7951 sec   (571 perm/sec)   p_kst 6.387665e-06   p_cons 3.296980e-01   p_joint 1.013216e-05

Joint ci ratio: 5.717878e-01	ci left: 7.401719e-06	ci right 1.348515e-05	k: 46	n:4550000
Cons ci ratio: 2.620354e-03	ci left: 3.292632e-01	ci right 3.301273e-01	k: 1500113	n:4550000
KS ci ratio: 7.156884e-01	ci left: 4.268522e-06	ci right 9.153578e-06	k: 29	n:4550000
NDUFS4   4550000 perm   7984 sec   (570 perm/sec)   p_kst 6.373626e-06   p_cons 3.296952e-01   p_joint 1.010989e-05

Joint ci ratio: 5.717878e-01	ci left: 7.385488e-06	ci right 1.345558e-05	k: 46	n:4560000
Cons ci ratio: 2.617464e-03	ci left: 3.292663e-01	ci right 3.301295e-01	k: 1503422	n:4560000
KS ci ratio: 7.156884e-01	ci left: 4.259161e-06	ci right 9.133504e-06	k: 29	n:4560000
NDUFS4   4560000 perm   8018 sec   (569 perm/sec)   p_kst 6.359649e-06   p_cons 3.296978e-01   p_joint 1.008772e-05

Joint ci ratio: 6.359053e-01	ci left: 5.700535e-06	ci right 1.115964e-05	k: 37	n:4570000
Cons ci ratio: 2.614606e-03	ci left: 3.292655e-01	ci right 3.301277e-01	k: 1506713	n:4570000
KS ci ratio: 7.156884e-01	ci left: 4.249841e-06	ci right 9.113519e-06	k: 29	n:4570000
NDUFS4   4570000 perm   8051 sec   (568 perm/sec)   p_kst 6.345733e-06   p_cons 3.296965e-01   p_joint 8.096280e-06

Joint ci ratio: 6.359053e-01	ci left: 5.688088e-06	ci right 1.113527e-05	k: 37	n:4580000
Cons ci ratio: 2.611753e-03	ci left: 3.292655e-01	ci right 3.301268e-01	k: 1510008	n:4580000
KS ci ratio: 7.156884e-01	ci left: 4.240562e-06	ci right 9.093620e-06	k: 29	n:4580000
NDUFS4   4580000 perm   8085 sec   (567 perm/sec)   p_kst 6.331878e-06   p_cons 3.296961e-01   p_joint 8.078603e-06

Joint ci ratio: 6.823819e-01	ci left: 4.768627e-06	ci right 9.841914e-06	k: 32	n:4590000
Cons ci ratio: 2.608890e-03	ci left: 3.292688e-01	ci right 3.301292e-01	k: 1513318	n:4590000
KS ci ratio: 7.156884e-01	ci left: 4.231323e-06	ci right 9.073808e-06	k: 29	n:4590000
NDUFS4   4590000 perm   8119 sec   (565 perm/sec)   p_kst 6.318083e-06   p_cons 3.296989e-01   p_joint 6.971678e-06

Joint ci ratio: 6.823819e-01	ci left: 4.758260e-06	ci right 9.820519e-06	k: 32	n:4600000
Cons ci ratio: 2.606090e-03	ci left: 3.292630e-01	ci right 3.301224e-01	k: 1516586	n:4600000
KS ci ratio: 7.156884e-01	ci left: 4.222125e-06	ci right 9.054083e-06	k: 29	n:4600000
NDUFS4   4600000 perm   8153 sec   (564 perm/sec)   p_kst 6.304348e-06   p_cons 3.296926e-01   p_joint 6.956522e-06

Joint ci ratio: 6.823819e-01	ci left: 4.747939e-06	ci right 9.799216e-06	k: 32	n:4610000
Cons ci ratio: 2.603245e-03	ci left: 3.292663e-01	ci right 3.301248e-01	k: 1519896	n:4610000
KS ci ratio: 7.156884e-01	ci left: 4.212966e-06	ci right 9.034443e-06	k: 29	n:4610000
NDUFS4   4610000 perm   8187 sec   (563 perm/sec)   p_kst 6.290672e-06   p_cons 3.296954e-01   p_joint 6.941432e-06

Joint ci ratio: 6.823819e-01	ci left: 4.737662e-06	ci right 9.778006e-06	k: 32	n:4620000
Cons ci ratio: 2.600357e-03	ci left: 3.292785e-01	ci right 3.301360e-01	k: 1523247	n:4620000
KS ci ratio: 7.156884e-01	ci left: 4.203847e-06	ci right 9.014888e-06	k: 29	n:4620000
NDUFS4   4620000 perm   8221 sec   (562 perm/sec)   p_kst 6.277056e-06   p_cons 3.297071e-01   p_joint 6.926407e-06

Joint ci ratio: 6.823819e-01	ci left: 4.727429e-06	ci right 9.756887e-06	k: 32	n:4630000
Cons ci ratio: 2.597648e-03	ci left: 3.292619e-01	ci right 3.301185e-01	k: 1526465	n:4630000
KS ci ratio: 7.156884e-01	ci left: 4.194767e-06	ci right 8.995417e-06	k: 29	n:4630000
NDUFS4   4630000 perm   8255 sec   (561 perm/sec)   p_kst 6.263499e-06   p_cons 3.296901e-01   p_joint 6.911447e-06

Joint ci ratio: 6.823819e-01	ci left: 4.717241e-06	ci right 9.735859e-06	k: 32	n:4640000
Cons ci ratio: 2.594824e-03	ci left: 3.292662e-01	ci right 3.301219e-01	k: 1529780	n:4640000
KS ci ratio: 7.156884e-01	ci left: 4.185727e-06	ci right 8.976030e-06	k: 29	n:4640000
NDUFS4   4640000 perm   8289 sec   (560 perm/sec)   p_kst 6.250000e-06   p_cons 3.296940e-01   p_joint 6.896552e-06

Joint ci ratio: 6.823819e-01	ci left: 4.707096e-06	ci right 9.714922e-06	k: 32	n:4650000
Cons ci ratio: 2.592051e-03	ci left: 3.292635e-01	ci right 3.301182e-01	k: 1533062	n:4650000
KS ci ratio: 7.156884e-01	ci left: 4.176725e-06	ci right 8.956727e-06	k: 29	n:4650000
NDUFS4   4650000 perm   8324 sec   (559 perm/sec)   p_kst 6.236559e-06   p_cons 3.296908e-01   p_joint 6.881720e-06

Joint ci ratio: 6.823819e-01	ci left: 4.696995e-06	ci right 9.694075e-06	k: 32	n:4660000
Cons ci ratio: 2.589227e-03	ci left: 3.292710e-01	ci right 3.301249e-01	k: 1536392	n:4660000
KS ci ratio: 7.156884e-01	ci left: 4.167762e-06	ci right 8.937507e-06	k: 29	n:4660000
NDUFS4   4660000 perm   8359 sec   (558 perm/sec)   p_kst 6.223176e-06   p_cons 3.296979e-01   p_joint 6.866953e-06

Joint ci ratio: 6.823819e-01	ci left: 4.686937e-06	ci right 9.673317e-06	k: 32	n:4670000
Cons ci ratio: 2.586438e-03	ci left: 3.292741e-01	ci right 3.301270e-01	k: 1539701	n:4670000
KS ci ratio: 7.156884e-01	ci left: 4.158838e-06	ci right 8.918369e-06	k: 29	n:4670000
NDUFS4   4670000 perm   8393 sec   (556 perm/sec)   p_kst 6.209850e-06   p_cons 3.297004e-01   p_joint 6.852248e-06

Joint ci ratio: 6.823819e-01	ci left: 4.676923e-06	ci right 9.652647e-06	k: 32	n:4680000
Cons ci ratio: 2.583614e-03	ci left: 3.292848e-01	ci right 3.301368e-01	k: 1543046	n:4680000
KS ci ratio: 7.156884e-01	ci left: 4.149951e-06	ci right 8.899312e-06	k: 29	n:4680000
NDUFS4   4680000 perm   8427 sec   (555 perm/sec)   p_kst 6.196581e-06   p_cons 3.297107e-01   p_joint 6.837607e-06

Joint ci ratio: 6.823819e-01	ci left: 4.666950e-06	ci right 9.632066e-06	k: 32	n:4690000
Cons ci ratio: 2.580931e-03	ci left: 3.292726e-01	ci right 3.301237e-01	k: 1546284	n:4690000
KS ci ratio: 7.156884e-01	ci left: 4.141103e-06	ci right 8.880337e-06	k: 29	n:4690000
NDUFS4   4690000 perm   8461 sec   (554 perm/sec)   p_kst 6.183369e-06   p_cons 3.296981e-01   p_joint 6.823028e-06

Joint ci ratio: 6.823819e-01	ci left: 4.657021e-06	ci right 9.611572e-06	k: 32	n:4700000
Cons ci ratio: 2.578293e-03	ci left: 3.292544e-01	ci right 3.301046e-01	k: 1549493	n:4700000
KS ci ratio: 7.156884e-01	ci left: 4.132292e-06	ci right 8.861443e-06	k: 29	n:4700000
NDUFS4   4700000 perm   8495 sec   (553 perm/sec)   p_kst 6.170213e-06   p_cons 3.296794e-01   p_joint 6.808511e-06

Joint ci ratio: 6.823819e-01	ci left: 4.647133e-06	ci right 9.591165e-06	k: 32	n:4710000
Cons ci ratio: 2.575655e-03	ci left: 3.292377e-01	ci right 3.300870e-01	k: 1552709	n:4710000
KS ci ratio: 7.156885e-01	ci left: 4.123519e-06	ci right 8.842629e-06	k: 29	n:4710000
NDUFS4   4710000 perm   8530 sec   (552 perm/sec)   p_kst 6.157113e-06   p_cons 3.296622e-01   p_joint 6.794055e-06

Joint ci ratio: 6.823820e-01	ci left: 4.637288e-06	ci right 9.570845e-06	k: 32	n:4720000
Cons ci ratio: 2.572949e-03	ci left: 3.292340e-01	ci right 3.300824e-01	k: 1555986	n:4720000
KS ci ratio: 7.156885e-01	ci left: 4.114782e-06	ci right 8.823894e-06	k: 29	n:4720000
NDUFS4   4720000 perm   8565 sec   (551 perm/sec)   p_kst 6.144068e-06   p_cons 3.296581e-01   p_joint 6.779661e-06

Joint ci ratio: 6.823820e-01	ci left: 4.627484e-06	ci right 9.550611e-06	k: 32	n:4730000
Cons ci ratio: 2.570285e-03	ci left: 3.292246e-01	ci right 3.300721e-01	k: 1559236	n:4730000
KS ci ratio: 7.156885e-01	ci left: 4.106083e-06	ci right 8.805239e-06	k: 29	n:4730000
NDUFS4   4730000 perm   8599 sec   (550 perm/sec)   p_kst 6.131078e-06   p_cons 3.296482e-01   p_joint 6.765328e-06

Joint ci ratio: 6.823820e-01	ci left: 4.617721e-06	ci right 9.530462e-06	k: 32	n:4740000
Cons ci ratio: 2.567574e-03	ci left: 3.292247e-01	ci right 3.300713e-01	k: 1562531	n:4740000
KS ci ratio: 7.156885e-01	ci left: 4.097420e-06	ci right 8.786663e-06	k: 29	n:4740000
NDUFS4   4740000 perm   8634 sec   (549 perm/sec)   p_kst 6.118143e-06   p_cons 3.296479e-01   p_joint 6.751055e-06

Joint ci ratio: 6.823820e-01	ci left: 4.607999e-06	ci right 9.510398e-06	k: 32	n:4750000
Cons ci ratio: 2.564914e-03	ci left: 3.292177e-01	ci right 3.300634e-01	k: 1565792	n:4750000
KS ci ratio: 7.156885e-01	ci left: 4.088794e-06	ci right 8.768165e-06	k: 29	n:4750000
NDUFS4   4750000 perm   8669 sec   (548 perm/sec)   p_kst 6.105263e-06   p_cons 3.296404e-01   p_joint 6.736842e-06

Joint ci ratio: 6.823820e-01	ci left: 4.598319e-06	ci right 9.490418e-06	k: 32	n:4760000
Cons ci ratio: 2.562235e-03	ci left: 3.292151e-01	ci right 3.300599e-01	k: 1569074	n:4760000
KS ci ratio: 7.156885e-01	ci left: 4.080204e-06	ci right 8.749744e-06	k: 29	n:4760000
NDUFS4   4760000 perm   8703 sec   (547 perm/sec)   p_kst 6.092437e-06   p_cons 3.296374e-01   p_joint 6.722689e-06

Joint ci ratio: 6.823820e-01	ci left: 4.588679e-06	ci right 9.470522e-06	k: 32	n:4770000
Cons ci ratio: 2.559548e-03	ci left: 3.292157e-01	ci right 3.300596e-01	k: 1572371	n:4770000
KS ci ratio: 7.156885e-01	ci left: 4.071650e-06	ci right 8.731401e-06	k: 29	n:4770000
NDUFS4   4770000 perm   8739 sec   (546 perm/sec)   p_kst 6.079665e-06   p_cons 3.296375e-01   p_joint 6.708595e-06

Joint ci ratio: 6.823820e-01	ci left: 4.579079e-06	ci right 9.450709e-06	k: 32	n:4780000
Cons ci ratio: 2.556837e-03	ci left: 3.292217e-01	ci right 3.300647e-01	k: 1575694	n:4780000
KS ci ratio: 7.156885e-01	ci left: 4.063132e-06	ci right 8.713134e-06	k: 29	n:4780000
NDUFS4   4780000 perm   8774 sec   (545 perm/sec)   p_kst 6.066946e-06   p_cons 3.296431e-01   p_joint 6.694561e-06

Joint ci ratio: 6.823820e-01	ci left: 4.569519e-06	ci right 9.430979e-06	k: 32	n:4790000
Cons ci ratio: 2.554275e-03	ci left: 3.292032e-01	ci right 3.300454e-01	k: 1578900	n:4790000
KS ci ratio: 7.156885e-01	ci left: 4.054650e-06	ci right 8.694944e-06	k: 29	n:4790000
NDUFS4   4790000 perm   8809 sec   (544 perm/sec)   p_kst 6.054280e-06   p_cons 3.296242e-01   p_joint 6.680585e-06

Joint ci ratio: 6.823820e-01	ci left: 4.559999e-06	ci right 9.411331e-06	k: 32	n:4800000
Cons ci ratio: 2.551591e-03	ci left: 3.292076e-01	ci right 3.300489e-01	k: 1582215	n:4800000
KS ci ratio: 7.156885e-01	ci left: 4.046203e-06	ci right 8.676830e-06	k: 29	n:4800000
NDUFS4   4800000 perm   8845 sec   (543 perm/sec)   p_kst 6.041667e-06   p_cons 3.296281e-01   p_joint 6.666667e-06

Joint ci ratio: 6.823820e-01	ci left: 4.550519e-06	ci right 9.391765e-06	k: 32	n:4810000
Cons ci ratio: 2.548943e-03	ci left: 3.292069e-01	ci right 3.300473e-01	k: 1585506	n:4810000
KS ci ratio: 7.156885e-01	ci left: 4.037791e-06	ci right 8.658791e-06	k: 29	n:4810000
NDUFS4   4810000 perm   8880 sec   (542 perm/sec)   p_kst 6.029106e-06   p_cons 3.296270e-01   p_joint 6.652807e-06

Joint ci ratio: 6.823820e-01	ci left: 4.541078e-06	ci right 9.372280e-06	k: 32	n:4820000
Cons ci ratio: 2.546242e-03	ci left: 3.292171e-01	ci right 3.300566e-01	k: 1588849	n:4820000
KS ci ratio: 7.156885e-01	ci left: 4.029413e-06	ci right 8.640826e-06	k: 29	n:4820000
NDUFS4   4820000 perm   8915 sec   (541 perm/sec)   p_kst 6.016598e-06   p_cons 3.296367e-01   p_joint 6.639004e-06

Joint ci ratio: 6.823820e-01	ci left: 4.531676e-06	ci right 9.352876e-06	k: 32	n:4830000
Cons ci ratio: 2.543646e-03	ci left: 3.292104e-01	ci right 3.300490e-01	k: 1592111	n:4830000
KS ci ratio: 7.156885e-01	ci left: 4.021071e-06	ci right 8.622936e-06	k: 29	n:4830000
NDUFS4   4830000 perm   8950 sec   (540 perm/sec)   p_kst 6.004141e-06   p_cons 3.296296e-01   p_joint 6.625259e-06

Joint ci ratio: 6.823820e-01	ci left: 4.522313e-06	ci right 9.333552e-06	k: 32	n:4840000
Cons ci ratio: 2.541043e-03	ci left: 3.292062e-01	ci right 3.300440e-01	k: 1595385	n:4840000
KS ci ratio: 7.156885e-01	ci left: 4.012763e-06	ci right 8.605120e-06	k: 29	n:4840000
NDUFS4   4840000 perm   8986 sec   (539 perm/sec)   p_kst 5.991736e-06   p_cons 3.296250e-01   p_joint 6.611570e-06

Joint ci ratio: 6.823820e-01	ci left: 4.512989e-06	ci right 9.314307e-06	k: 32	n:4850000
Cons ci ratio: 2.538538e-03	ci left: 3.291864e-01	ci right 3.300233e-01	k: 1598583	n:4850000
KS ci ratio: 7.156885e-01	ci left: 4.004489e-06	ci right 8.587378e-06	k: 29	n:4850000
NDUFS4   4850000 perm   9021 sec   (538 perm/sec)   p_kst 5.979381e-06   p_cons 3.296047e-01   p_joint 6.597938e-06

Joint ci ratio: 6.823820e-01	ci left: 4.503703e-06	ci right 9.295142e-06	k: 32	n:4860000
Cons ci ratio: 2.535807e-03	ci left: 3.292074e-01	ci right 3.300434e-01	k: 1601979	n:4860000
KS ci ratio: 7.156885e-01	ci left: 3.996249e-06	ci right 8.569708e-06	k: 29	n:4860000
NDUFS4   4860000 perm   9057 sec   (537 perm/sec)   p_kst 5.967078e-06   p_cons 3.296253e-01   p_joint 6.584362e-06

Joint ci ratio: 5.658004e-01	ci left: 7.091144e-06	ci right 1.283366e-05	k: 47	n:4870000
Cons ci ratio: 2.533145e-03	ci left: 3.292178e-01	ci right 3.300530e-01	k: 1605324	n:4870000
KS ci ratio: 7.040505e-01	ci left: 4.156241e-06	ci right 8.794006e-06	k: 30	n:4870000
NDUFS4   4870000 perm   9092 sec   (536 perm/sec)   p_kst 6.160164e-06   p_cons 3.296353e-01   p_joint 9.650924e-06

Joint ci ratio: 5.658004e-01	ci left: 7.076613e-06	ci right 1.280736e-05	k: 47	n:4880000
Cons ci ratio: 2.530561e-03	ci left: 3.292161e-01	ci right 3.300505e-01	k: 1608610	n:4880000
KS ci ratio: 7.040505e-01	ci left: 4.147724e-06	ci right 8.775985e-06	k: 30	n:4880000
NDUFS4   4880000 perm   9127 sec   (535 perm/sec)   p_kst 6.147541e-06   p_cons 3.296332e-01   p_joint 9.631148e-06

Joint ci ratio: 5.599971e-01	ci left: 7.237516e-06	ci right 1.301451e-05	k: 48	n:4890000
Cons ci ratio: 2.527959e-03	ci left: 3.292187e-01	ci right 3.300522e-01	k: 1611917	n:4890000
KS ci ratio: 6.929623e-01	ci left: 4.307365e-06	ci right 8.998357e-06	k: 31	n:4890000
NDUFS4   4890000 perm   9163 sec   (534 perm/sec)   p_kst 6.339468e-06   p_cons 3.296354e-01   p_joint 9.815951e-06

Joint ci ratio: 5.599971e-01	ci left: 7.222745e-06	ci right 1.298795e-05	k: 48	n:4900000
Cons ci ratio: 2.525407e-03	ci left: 3.292142e-01	ci right 3.300468e-01	k: 1615189	n:4900000
KS ci ratio: 6.929623e-01	ci left: 4.298575e-06	ci right 8.979993e-06	k: 31	n:4900000
NDUFS4   4900000 perm   9199 sec   (533 perm/sec)   p_kst 6.326531e-06   p_cons 3.296304e-01   p_joint 9.795918e-06

Joint ci ratio: 5.599971e-01	ci left: 7.208035e-06	ci right 1.296149e-05	k: 48	n:4910000
Cons ci ratio: 2.522799e-03	ci left: 3.292207e-01	ci right 3.300525e-01	k: 1618515	n:4910000
KS ci ratio: 6.929623e-01	ci left: 4.289820e-06	ci right 8.961704e-06	k: 31	n:4910000
NDUFS4   4910000 perm   9235 sec   (532 perm/sec)   p_kst 6.313646e-06   p_cons 3.296365e-01   p_joint 9.775967e-06

Joint ci ratio: 6.625985e-01	ci left: 4.785775e-06	ci right 9.656814e-06	k: 34	n:4920000
Cons ci ratio: 2.520243e-03	ci left: 3.292196e-01	ci right 3.300505e-01	k: 1621804	n:4920000
KS ci ratio: 6.929623e-01	ci left: 4.281101e-06	ci right 8.943489e-06	k: 31	n:4920000
NDUFS4   4920000 perm   9271 sec   (531 perm/sec)   p_kst 6.300813e-06   p_cons 3.296350e-01   p_joint 6.910569e-06

Joint ci ratio: 6.625985e-01	ci left: 4.776067e-06	ci right 9.637227e-06	k: 34	n:4930000
Cons ci ratio: 2.517726e-03	ci left: 3.292128e-01	ci right 3.300429e-01	k: 1625065	n:4930000
KS ci ratio: 6.929623e-01	ci left: 4.272417e-06	ci right 8.925348e-06	k: 31	n:4930000
NDUFS4   4930000 perm   9307 sec   (530 perm/sec)   p_kst 6.288032e-06   p_cons 3.296278e-01   p_joint 6.896552e-06

Joint ci ratio: 6.625985e-01	ci left: 4.766399e-06	ci right 9.617718e-06	k: 34	n:4940000
Cons ci ratio: 2.515055e-03	ci left: 3.292347e-01	ci right 3.300639e-01	k: 1628467	n:4940000
KS ci ratio: 6.929623e-01	ci left: 4.263768e-06	ci right 8.907281e-06	k: 31	n:4940000
NDUFS4   4940000 perm   9343 sec   (529 perm/sec)   p_kst 6.275304e-06   p_cons 3.296492e-01   p_joint 6.882591e-06

Joint ci ratio: 6.625985e-01	ci left: 4.756770e-06	ci right 9.598288e-06	k: 34	n:4950000
Cons ci ratio: 2.512572e-03	ci left: 3.292247e-01	ci right 3.300531e-01	k: 1631712	n:4950000
KS ci ratio: 6.929623e-01	ci left: 4.255155e-06	ci right 8.889286e-06	k: 31	n:4950000
NDUFS4   4950000 perm   9379 sec   (528 perm/sec)   p_kst 6.262626e-06   p_cons 3.296388e-01   p_joint 6.868687e-06

Joint ci ratio: 6.533309e-01	ci left: 4.915082e-06	ci right 9.813802e-06	k: 35	n:4960000
Cons ci ratio: 2.509985e-03	ci left: 3.292345e-01	ci right 3.300621e-01	k: 1635055	n:4960000
KS ci ratio: 6.823821e-01	ci left: 4.412903e-06	ci right 9.107740e-06	k: 32	n:4960000
NDUFS4   4960000 perm   9416 sec   (527 perm/sec)   p_kst 6.451613e-06   p_cons 3.296482e-01   p_joint 7.056452e-06

Joint ci ratio: 6.533309e-01	ci left: 4.905192e-06	ci right 9.794056e-06	k: 35	n:4970000
Cons ci ratio: 2.507477e-03	ci left: 3.292316e-01	ci right 3.300584e-01	k: 1638335	n:4970000
KS ci ratio: 6.823821e-01	ci left: 4.404023e-06	ci right 9.089415e-06	k: 32	n:4970000
NDUFS4   4970000 perm   9451 sec   (526 perm/sec)   p_kst 6.438632e-06   p_cons 3.296449e-01   p_joint 7.042254e-06

Joint ci ratio: 6.533309e-01	ci left: 4.895343e-06	ci right 9.774390e-06	k: 35	n:4980000
Cons ci ratio: 2.504967e-03	ci left: 3.292305e-01	ci right 3.300564e-01	k: 1641624	n:4980000
KS ci ratio: 6.823821e-01	ci left: 4.395180e-06	ci right 9.071163e-06	k: 32	n:4980000
NDUFS4   4980000 perm   9488 sec   (525 perm/sec)   p_kst 6.425703e-06   p_cons 3.296434e-01   p_joint 7.028112e-06

Joint ci ratio: 6.533309e-01	ci left: 4.885532e-06	ci right 9.754802e-06	k: 35	n:4990000
Cons ci ratio: 2.502490e-03	ci left: 3.292248e-01	ci right 3.300499e-01	k: 1644890	n:4990000
KS ci ratio: 6.823821e-01	ci left: 4.386372e-06	ci right 9.052984e-06	k: 32	n:4990000
NDUFS4   4990000 perm   9524 sec   (524 perm/sec)   p_kst 6.412826e-06   p_cons 3.296373e-01   p_joint 7.014028e-06

Joint ci ratio: 6.533309e-01	ci left: 4.875761e-06	ci right 9.735292e-06	k: 35	n:5000000
Cons ci ratio: 2.500061e-03	ci left: 3.292120e-01	ci right 3.300362e-01	k: 1648120	n:5000000
KS ci ratio: 6.823821e-01	ci left: 4.377599e-06	ci right 9.034879e-06	k: 32	n:5000000
NDUFS4   5000000 perm   9561 sec   (523 perm/sec)   p_kst 6.400000e-06   p_cons 3.296240e-01   p_joint 7.000000e-06

Outputting figure to mutsig2_images.part000000000113/NDUFS4.3_548_5000000_6.4e-06_0.32962_7e-06.png
                gene_name: NDUFS4
               theta_stop: 0.68 
                    nperm: 5000000 
                     p_ks: 6.40e-06 
        ci_ks_bounds_left: 4.38e-06 
       ci_ks_bounds_right: 9.03e-06 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.33 
                  p_joint: 7.00e-06 
     ci_joint_bounds_left: 4.88e-06 
    ci_joint_bounds_right: 9.74e-06 

Current progress: 33 percent done.
NDN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.602876e-01	ci left: 5.549202e-03	ci right 8.947365e-03	k: 71	n:10000
Cons ci ratio: 4.188009e-02	ci left: 4.570825e-01	ci right 4.767368e-01	k: 4669	n:10000
KS ci ratio: 1.011330e+00	ci left: 7.655977e-04	ci right 2.347848e-03	k: 14	n:10000
NDN   10000 perm   1 sec   (7548 perm/sec)   p_kst 1.400000e-03   p_cons 4.669000e-01   p_joint 7.100000e-03

Joint ci ratio: 3.495094e-01	ci left: 5.159405e-03	ci right 7.387804e-03	k: 124	n:20000
Cons ci ratio: 2.969952e-02	ci left: 4.585674e-01	ci right 4.724426e-01	k: 9310	n:20000
KS ci ratio: 6.923928e-01	ci left: 1.053385e-03	ci right 2.199386e-03	k: 31	n:20000
NDN   20000 perm   3 sec   (6758 perm/sec)   p_kst 1.550000e-03   p_cons 4.655000e-01   p_joint 6.200000e-03

Joint ci ratio: 3.913396e-01	ci left: 2.682862e-03	ci right 4.016189e-03	k: 99	n:30000
Cons ci ratio: 2.426647e-02	ci left: 4.595094e-01	ci right 4.708307e-01	k: 13955	n:30000
KS ci ratio: 5.905189e-01	ci left: 1.037499e-03	ci right 1.930210e-03	k: 43	n:30000
NDN   30000 perm   5 sec   (6450 perm/sec)   p_kst 1.433333e-03   p_cons 4.651667e-01   p_joint 3.300000e-03

Joint ci ratio: 2.560555e-01	ci left: 5.079395e-03	ci right 6.593699e-03	k: 232	n:40000
Cons ci ratio: 2.101637e-02	ci left: 4.602522e-01	ci right 4.700529e-01	k: 18606	n:40000
KS ci ratio: 5.015155e-01	ci left: 1.144847e-03	ci right 1.930381e-03	k: 60	n:40000
NDN   40000 perm   6 sec   (6229 perm/sec)   p_kst 1.500000e-03   p_cons 4.651500e-01   p_joint 5.800000e-03

Joint ci ratio: 1.612591e-01	ci left: 1.073749e-02	ci right 1.263984e-02	k: 583	n:50000
Cons ci ratio: 1.750432e-02	ci left: 4.963475e-01	ci right 5.051325e-01	k: 25037	n:50000
KS ci ratio: 4.522985e-01	ci left: 1.162291e-03	ci right 1.857653e-03	k: 74	n:50000
NDN   50000 perm   8 sec   (6067 perm/sec)   p_kst 1.480000e-03   p_cons 5.007400e-01   p_joint 1.166000e-02

Joint ci ratio: 1.477217e-01	ci left: 1.074252e-02	ci right 1.247187e-02	k: 695	n:60000
Cons ci ratio: 1.598534e-02	ci left: 4.965410e-01	ci right 5.045590e-01	k: 30033	n:60000
KS ci ratio: 4.106125e-01	ci left: 1.206344e-03	ci right 1.843438e-03	k: 90	n:60000
NDN   60000 perm   10 sec   (5819 perm/sec)   p_kst 1.500000e-03   p_cons 5.005500e-01   p_joint 1.158333e-02

Joint ci ratio: 1.370202e-01	ci left: 1.076472e-02	ci right 1.236186e-02	k: 808	n:70000
Cons ci ratio: 1.479136e-02	ci left: 4.971175e-01	ci right 5.045396e-01	k: 35058	n:70000
KS ci ratio: 3.822631e-01	ci left: 1.214093e-03	ci right 1.799908e-03	k: 104	n:70000
NDN   70000 perm   12 sec   (5705 perm/sec)   p_kst 1.485714e-03   p_cons 5.008286e-01   p_joint 1.154286e-02

Joint ci ratio: 1.594311e-01	ci left: 6.901801e-03	ci right 8.109328e-03	k: 599	n:80000
Cons ci ratio: 1.384934e-02	ci left: 4.968790e-01	ci right 5.038209e-01	k: 40028	n:80000
KS ci ratio: 3.575747e-01	ci left: 1.232420e-03	ci right 1.779755e-03	k: 119	n:80000
NDN   80000 perm   14 sec   (5587 perm/sec)   p_kst 1.487500e-03   p_cons 5.003500e-01   p_joint 7.487500e-03

Joint ci ratio: 1.508772e-01	ci left: 6.882524e-03	ci right 8.016237e-03	k: 669	n:90000
Cons ci ratio: 1.308097e-02	ci left: 4.961723e-01	ci right 5.027166e-01	k: 44950	n:90000
KS ci ratio: 3.383824e-01	ci left: 1.237454e-03	ci right 1.751094e-03	k: 133	n:90000
NDN   90000 perm   16 sec   (5484 perm/sec)   p_kst 1.477778e-03   p_cons 4.994444e-01   p_joint 7.433333e-03

Joint ci ratio: 1.438613e-01	ci left: 6.839564e-03	ci right 7.909308e-03	k: 736	n:100000
Cons ci ratio: 1.241579e-02	ci left: 4.960961e-01	ci right 5.023040e-01	k: 49920	n:100000
KS ci ratio: 3.241830e-01	ci left: 1.223731e-03	ci right 1.705930e-03	k: 145	n:100000
NDN   100000 perm   19 sec   (5297 perm/sec)   p_kst 1.450000e-03   p_cons 4.992000e-01   p_joint 7.360000e-03

Joint ci ratio: 1.456102e-01	ci left: 6.068659e-03	ci right 7.030364e-03	k: 719	n:110000
Cons ci ratio: 1.183414e-02	ci left: 4.964044e-01	ci right 5.023229e-01	k: 54930	n:110000
KS ci ratio: 3.136271e-01	ci left: 1.196114e-03	ci right 1.649010e-03	k: 155	n:110000
NDN   110000 perm   21 sec   (5203 perm/sec)   p_kst 1.409091e-03   p_cons 4.993636e-01   p_joint 6.536364e-03

Joint ci ratio: 1.331126e-01	ci left: 6.697181e-03	ci right 7.660199e-03	k: 860	n:120000
Cons ci ratio: 1.131706e-02	ci left: 4.971169e-01	ci right 5.027831e-01	k: 59994	n:120000
KS ci ratio: 2.986817e-01	ci left: 1.219537e-03	ci right 1.655129e-03	k: 171	n:120000
NDN   120000 perm   24 sec   (5104 perm/sec)   p_kst 1.425000e-03   p_cons 4.999500e-01   p_joint 7.166667e-03

Joint ci ratio: 1.095460e-01	ci left: 9.219234e-03	ci right 1.029511e-02	k: 1267	n:130000
Cons ci ratio: 1.087652e-02	ci left: 4.970705e-01	ci right 5.025141e-01	k: 64973	n:130000
KS ci ratio: 2.872215e-01	ci left: 1.225509e-03	ci right 1.643392e-03	k: 185	n:130000
NDN   130000 perm   26 sec   (5005 perm/sec)   p_kst 1.423077e-03   p_cons 4.997923e-01   p_joint 9.746154e-03

Joint ci ratio: 1.000315e-01	ci left: 1.030695e-02	ci right 1.139917e-02	k: 1518	n:140000
Cons ci ratio: 1.123615e-02	ci left: 4.624416e-01	ci right 4.676741e-01	k: 65108	n:140000
KS ci ratio: 2.790909e-01	ci left: 1.210964e-03	ci right 1.610145e-03	k: 196	n:140000
NDN   140000 perm   29 sec   (4872 perm/sec)   p_kst 1.400000e-03   p_cons 4.650571e-01   p_joint 1.084286e-02

Joint ci ratio: 1.223215e-01	ci left: 6.383872e-03	ci right 7.222030e-03	k: 1019	n:150000
Cons ci ratio: 1.085815e-02	ci left: 4.623933e-01	ci right 4.674481e-01	k: 69738	n:150000
KS ci ratio: 2.703154e-01	ci left: 1.210932e-03	ci right 1.595422e-03	k: 209	n:150000
NDN   150000 perm   31 sec   (4765 perm/sec)   p_kst 1.393333e-03   p_cons 4.649200e-01   p_joint 6.793333e-03

Joint ci ratio: 1.185471e-01	ci left: 6.384954e-03	ci right 7.195573e-03	k: 1085	n:160000
Cons ci ratio: 1.051181e-02	ci left: 4.625473e-01	ci right 4.674414e-01	k: 74399	n:160000
KS ci ratio: 2.659256e-01	ci left: 1.176055e-03	ci right 1.542397e-03	k: 216	n:160000
NDN   160000 perm   34 sec   (4690 perm/sec)   p_kst 1.350000e-03   p_cons 4.649937e-01   p_joint 6.781250e-03

Joint ci ratio: 1.327130e-01	ci left: 4.766912e-03	ci right 5.450132e-03	k: 867	n:170000
Cons ci ratio: 1.021147e-02	ci left: 4.619622e-01	ci right 4.667096e-01	k: 78937	n:170000
KS ci ratio: 2.577410e-01	ci left: 1.183825e-03	ci right 1.539412e-03	k: 230	n:170000
NDN   170000 perm   37 sec   (4623 perm/sec)   p_kst 1.352941e-03   p_cons 4.643353e-01   p_joint 5.100000e-03

Joint ci ratio: 1.047735e-01	ci left: 7.312177e-03	ci right 8.126020e-03	k: 1388	n:180000
Cons ci ratio: 9.927241e-03	ci left: 4.618550e-01	ci right 4.664683e-01	k: 83549	n:180000
KS ci ratio: 2.502684e-01	ci left: 1.190885e-03	ci right 1.536606e-03	k: 244	n:180000
NDN   180000 perm   40 sec   (4545 perm/sec)   p_kst 1.355556e-03   p_cons 4.641611e-01   p_joint 7.711111e-03

Joint ci ratio: 9.056962e-02	ci left: 9.320757e-03	ci right 1.021009e-02	k: 1854	n:190000
Cons ci ratio: 9.008659e-03	ci left: 4.968807e-01	ci right 5.013824e-01	k: 94835	n:190000
KS ci ratio: 2.443568e-01	ci left: 1.187451e-03	ci right 1.522797e-03	k: 256	n:190000
NDN   190000 perm   42 sec   (4481 perm/sec)   p_kst 1.347368e-03   p_cons 4.991316e-01   p_joint 9.757895e-03

Joint ci ratio: 8.835937e-02	ci left: 9.314202e-03	ci right 1.018010e-02	k: 1948	n:200000
Cons ci ratio: 8.775494e-03	ci left: 4.972262e-01	ci right 5.016138e-01	k: 99884	n:200000
KS ci ratio: 2.397393e-01	ci left: 1.175045e-03	ci right 1.499685e-03	k: 266	n:200000
NDN   200000 perm   45 sec   (4408 perm/sec)   p_kst 1.330000e-03   p_cons 4.994200e-01   p_joint 9.740000e-03

Joint ci ratio: 9.735020e-02	ci left: 7.288747e-03	ci right 8.039224e-03	k: 1608	n:210000
Cons ci ratio: 8.573001e-03	ci left: 4.967544e-01	ci right 5.010361e-01	k: 104768	n:210000
KS ci ratio: 2.336905e-01	ci left: 1.181804e-03	ci right 1.498884e-03	k: 280	n:210000
NDN   210000 perm   48 sec   (4346 perm/sec)   p_kst 1.333333e-03   p_cons 4.988952e-01   p_joint 7.657143e-03

Joint ci ratio: 9.515804e-02	ci left: 7.290143e-03	ci right 8.022918e-03	k: 1683	n:220000
Cons ci ratio: 8.376655e-03	ci left: 4.967584e-01	ci right 5.009416e-01	k: 109747	n:220000
KS ci ratio: 2.276915e-01	ci left: 1.192329e-03	ci right 1.502866e-03	k: 295	n:220000
NDN   220000 perm   51 sec   (4286 perm/sec)   p_kst 1.340909e-03   p_cons 4.988500e-01   p_joint 7.650000e-03

Joint ci ratio: 8.271948e-02	ci left: 9.269397e-03	ci right 1.007347e-02	k: 2223	n:230000
Cons ci ratio: 8.200195e-03	ci left: 4.963371e-01	ci right 5.004282e-01	k: 114628	n:230000
KS ci ratio: 2.232126e-01	ci left: 1.189716e-03	ci right 1.492640e-03	k: 307	n:230000
NDN   230000 perm   54 sec   (4226 perm/sec)   p_kst 1.334783e-03   p_cons 4.983826e-01   p_joint 9.665217e-03

Joint ci ratio: 8.107836e-02	ci left: 9.254570e-03	ci right 1.004067e-02	k: 2314	n:240000
Cons ci ratio: 8.026995e-03	ci left: 4.964142e-01	ci right 5.004191e-01	k: 119620	n:240000
KS ci ratio: 2.186462e-01	ci left: 1.191314e-03	ci right 1.487606e-03	k: 320	n:240000
NDN   240000 perm   58 sec   (4167 perm/sec)   p_kst 1.333333e-03   p_cons 4.984167e-01   p_joint 9.641667e-03

Joint ci ratio: 7.946452e-02	ci left: 9.256759e-03	ci right 1.002667e-02	k: 2409	n:250000
Cons ci ratio: 7.869172e-03	ci left: 4.961781e-01	ci right 5.001020e-01	k: 124535	n:250000
KS ci ratio: 2.133916e-01	ci left: 1.204200e-03	ci right 1.495558e-03	k: 336	n:250000
NDN   250000 perm   61 sec   (4109 perm/sec)   p_kst 1.344000e-03   p_cons 4.981400e-01   p_joint 9.636000e-03

Joint ci ratio: 8.945942e-02	ci left: 7.002689e-03	ci right 7.662211e-03	k: 1905	n:260000
Cons ci ratio: 7.727016e-03	ci left: 4.955262e-01	ci right 4.993738e-01	k: 129337	n:260000
KS ci ratio: 2.093913e-01	ci left: 1.205238e-03	ci right 1.490679e-03	k: 349	n:260000
NDN   260000 perm   64 sec   (4054 perm/sec)   p_kst 1.342308e-03   p_cons 4.974500e-01   p_joint 7.326923e-03

Joint ci ratio: 8.925967e-02	ci left: 6.775883e-03	ci right 7.412544e-03	k: 1914	n:270000
Cons ci ratio: 7.579233e-03	ci left: 4.957826e-01	ci right 4.995582e-01	k: 134371	n:270000
KS ci ratio: 2.056079e-01	ci left: 1.206246e-03	ci right 1.486115e-03	k: 362	n:270000
NDN   270000 perm   68 sec   (3999 perm/sec)   p_kst 1.340741e-03   p_cons 4.976704e-01   p_joint 7.088889e-03

Joint ci ratio: 8.913057e-02	ci left: 6.554804e-03	ci right 7.169755e-03	k: 1920	n:280000
Cons ci ratio: 7.442539e-03	ci left: 4.958248e-01	ci right 4.995323e-01	k: 139350	n:280000
KS ci ratio: 2.017540e-01	ci left: 1.210616e-03	ci right 1.485586e-03	k: 376	n:280000
NDN   280000 perm   71 sec   (3945 perm/sec)   p_kst 1.342857e-03   p_cons 4.976786e-01   p_joint 6.857143e-03

Joint ci ratio: 8.468433e-02	ci left: 7.023761e-03	ci right 7.648214e-03	k: 2126	n:290000
Cons ci ratio: 7.314294e-03	ci left: 4.957751e-01	ci right 4.994181e-01	k: 144303	n:290000
KS ci ratio: 1.976035e-01	ci left: 1.221286e-03	ci right 1.492285e-03	k: 392	n:290000
NDN   290000 perm   75 sec   (3885 perm/sec)   p_kst 1.351724e-03   p_cons 4.975966e-01   p_joint 7.331034e-03

Joint ci ratio: 8.008356e-02	ci left: 7.605901e-03	ci right 8.243660e-03	k: 2376	n:300000
Cons ci ratio: 7.192027e-03	ci left: 4.957592e-01	ci right 4.993409e-01	k: 149265	n:300000
KS ci ratio: 1.946545e-01	ci left: 1.218612e-03	ci right 1.484504e-03	k: 404	n:300000
NDN   300000 perm   78 sec   (3835 perm/sec)   p_kst 1.346667e-03   p_cons 4.975500e-01   p_joint 7.920000e-03

Joint ci ratio: 8.844511e-02	ci left: 6.018175e-03	ci right 6.578212e-03	k: 1951	n:310000
Cons ci ratio: 7.079118e-03	ci left: 4.955029e-01	ci right 4.990262e-01	k: 154152	n:310000
KS ci ratio: 1.934666e-01	ci left: 1.194646e-03	ci right 1.453531e-03	k: 409	n:310000
NDN   310000 perm   82 sec   (3785 perm/sec)   p_kst 1.319355e-03   p_cons 4.972645e-01   p_joint 6.293548e-03

Joint ci ratio: 8.707323e-02	ci left: 6.019605e-03	ci right 6.570644e-03	k: 2013	n:320000
Cons ci ratio: 6.963391e-03	ci left: 4.958349e-01	ci right 4.993027e-01	k: 159222	n:320000
KS ci ratio: 1.911506e-01	ci left: 1.187058e-03	ci right 1.440861e-03	k: 419	n:320000
NDN   320000 perm   86 sec   (3737 perm/sec)   p_kst 1.309375e-03   p_cons 4.975688e-01   p_joint 6.290625e-03

Joint ci ratio: 8.191976e-02	ci left: 6.608516e-03	ci right 7.175953e-03	k: 2273	n:330000
Cons ci ratio: 6.854195e-03	ci left: 4.960714e-01	ci right 4.994862e-01	k: 164267	n:330000
KS ci ratio: 1.876096e-01	ci left: 1.197274e-03	ci right 1.447979e-03	k: 435	n:330000
NDN   330000 perm   89 sec   (3692 perm/sec)   p_kst 1.318182e-03   p_cons 4.977788e-01   p_joint 6.887879e-03

Joint ci ratio: 7.917080e-02	ci left: 6.875296e-03	ci right 7.444917e-03	k: 2433	n:340000
Cons ci ratio: 6.750017e-03	ci left: 4.962914e-01	ci right 4.996557e-01	k: 169311	n:340000
KS ci ratio: 1.854953e-01	ci left: 1.190097e-03	ci right 1.436175e-03	k: 445	n:340000
NDN   340000 perm   93 sec   (3646 perm/sec)   p_kst 1.308824e-03   p_cons 4.979735e-01   p_joint 7.155882e-03

Joint ci ratio: 7.794686e-02	ci left: 6.894540e-03	ci right 7.456523e-03	k: 2510	n:350000
Cons ci ratio: 6.652348e-03	ci left: 4.963564e-01	ci right 4.996722e-01	k: 174305	n:350000
KS ci ratio: 1.822542e-01	ci left: 1.199705e-03	ci right 1.442957e-03	k: 461	n:350000
NDN   350000 perm   97 sec   (3602 perm/sec)   p_kst 1.317143e-03   p_cons 4.980143e-01   p_joint 7.171429e-03

Joint ci ratio: 7.823757e-02	ci left: 6.653969e-03	ci right 7.198458e-03	k: 2492	n:360000
Cons ci ratio: 6.557597e-03	ci left: 4.965098e-01	ci right 4.997791e-01	k: 179332	n:360000
KS ci ratio: 1.793653e-01	ci left: 1.206161e-03	ci right 1.446425e-03	k: 476	n:360000
NDN   360000 perm   101 sec   (3558 perm/sec)   p_kst 1.322222e-03   p_cons 4.981444e-01   p_joint 6.922222e-03

Joint ci ratio: 7.726802e-02	ci left: 6.641090e-03	ci right 7.177487e-03	k: 2555	n:370000
Cons ci ratio: 6.470208e-03	ci left: 4.963903e-01	ci right 4.996151e-01	k: 184261	n:370000
KS ci ratio: 1.767895e-01	ci left: 1.209714e-03	ci right 1.446855e-03	k: 490	n:370000
NDN   370000 perm   105 sec   (3513 perm/sec)   p_kst 1.324324e-03   p_cons 4.980027e-01   p_joint 6.905405e-03

Joint ci ratio: 7.617273e-02	ci left: 6.657327e-03	ci right 7.187076e-03	k: 2629	n:380000
Cons ci ratio: 6.387231e-03	ci left: 4.961985e-01	ci right 4.993805e-01	k: 189160	n:380000
KS ci ratio: 1.743215e-01	ci left: 1.213103e-03	ci right 1.447239e-03	k: 504	n:380000
NDN   380000 perm   109 sec   (3471 perm/sec)   p_kst 1.326316e-03   p_cons 4.977895e-01   p_joint 6.918421e-03

Joint ci ratio: 7.524894e-02	ci left: 6.650137e-03	ci right 7.172615e-03	k: 2694	n:390000
Cons ci ratio: 6.302481e-03	ci left: 4.964039e-01	ci right 4.995449e-01	k: 194210	n:390000
KS ci ratio: 1.726215e-01	ci left: 1.206525e-03	ci right 1.436884e-03	k: 514	n:390000
NDN   390000 perm   114 sec   (3431 perm/sec)   p_kst 1.317949e-03   p_cons 4.979744e-01   p_joint 6.907692e-03

Joint ci ratio: 6.772902e-02	ci left: 8.023618e-03	ci right 8.588539e-03	k: 3321	n:400000
Cons ci ratio: 6.223723e-03	ci left: 4.963818e-01	ci right 4.994832e-01	k: 199173	n:400000
KS ci ratio: 1.704833e-01	ci left: 1.207467e-03	ci right 1.434856e-03	k: 527	n:400000
NDN   400000 perm   118 sec   (3392 perm/sec)   p_kst 1.317500e-03   p_cons 4.979325e-01   p_joint 8.302500e-03

Joint ci ratio: 6.791134e-02	ci left: 7.787128e-03	ci right 8.336932e-03	k: 3304	n:410000
Cons ci ratio: 6.148205e-03	ci left: 4.963318e-01	ci right 4.993951e-01	k: 204124	n:410000
KS ci ratio: 1.690495e-01	ci left: 1.199034e-03	ci right 1.422743e-03	k: 536	n:410000
NDN   410000 perm   122 sec   (3355 perm/sec)   p_kst 1.307317e-03   p_cons 4.978634e-01   p_joint 8.058537e-03

Joint ci ratio: 6.719421e-02	ci left: 7.767910e-03	ci right 8.310339e-03	k: 3375	n:420000
Cons ci ratio: 6.075343e-03	ci left: 4.962867e-01	ci right 4.993133e-01	k: 209076	n:420000
KS ci ratio: 1.676512e-01	ci left: 1.191011e-03	ci right 1.411199e-03	k: 545	n:420000
NDN   420000 perm   127 sec   (3317 perm/sec)   p_kst 1.297619e-03   p_cons 4.978000e-01   p_joint 8.035714e-03

Joint ci ratio: 6.639261e-02	ci left: 7.774774e-03	ci right 8.310957e-03	k: 3457	n:430000
Cons ci ratio: 6.005876e-03	ci left: 4.961719e-01	ci right 4.991631e-01	k: 213997	n:430000
KS ci ratio: 1.659879e-01	ci left: 1.187826e-03	ci right 1.405030e-03	k: 556	n:430000
NDN   430000 perm   131 sec   (3277 perm/sec)   p_kst 1.293023e-03   p_cons 4.976674e-01   p_joint 8.039535e-03

Joint ci ratio: 6.565644e-02	ci left: 7.772420e-03	ci right 8.302271e-03	k: 3535	n:440000
Cons ci ratio: 5.935419e-03	ci left: 4.963420e-01	ci right 4.992990e-01	k: 219041	n:440000
KS ci ratio: 1.637967e-01	ci left: 1.193515e-03	ci right 1.408593e-03	k: 571	n:440000
NDN   440000 perm   136 sec   (3232 perm/sec)   p_kst 1.297727e-03   p_cons 4.978205e-01   p_joint 8.034091e-03

Joint ci ratio: 6.398732e-02	ci left: 8.006364e-03	ci right 8.537774e-03	k: 3721	n:450000
Cons ci ratio: 5.868766e-03	ci left: 4.963869e-01	ci right 4.993109e-01	k: 224032	n:450000
KS ci ratio: 1.618281e-01	ci left: 1.196836e-03	ci right 1.409668e-03	k: 585	n:450000
NDN   450000 perm   141 sec   (3197 perm/sec)   p_kst 1.300000e-03   p_cons 4.978489e-01   p_joint 8.268889e-03

Joint ci ratio: 6.328556e-02	ci left: 8.009877e-03	ci right 8.535476e-03	k: 3804	n:460000
Cons ci ratio: 5.804764e-03	ci left: 4.963910e-01	ci right 4.992829e-01	k: 229005	n:460000
KS ci ratio: 1.597955e-01	ci left: 1.202114e-03	ci right 1.412943e-03	k: 600	n:460000
NDN   460000 perm   145 sec   (3163 perm/sec)   p_kst 1.304348e-03   p_cons 4.978370e-01   p_joint 8.269565e-03

Joint ci ratio: 6.255774e-02	ci left: 8.025838e-03	ci right 8.546208e-03	k: 3893	n:470000
Cons ci ratio: 5.743201e-03	ci left: 4.963610e-01	ci right 4.992220e-01	k: 233962	n:470000
KS ci ratio: 1.575817e-01	ci left: 1.211272e-03	ci right 1.420485e-03	k: 617	n:470000
NDN   470000 perm   150 sec   (3131 perm/sec)   p_kst 1.312766e-03   p_cons 4.977915e-01   p_joint 8.282979e-03

Joint ci ratio: 6.192506e-02	ci left: 8.022706e-03	ci right 8.537423e-03	k: 3973	n:480000
Cons ci ratio: 5.682278e-03	ci left: 4.964449e-01	ci right 4.992759e-01	k: 238973	n:480000
KS ci ratio: 1.566977e-01	ci left: 1.200046e-03	ci right 1.406049e-03	k: 624	n:480000
NDN   480000 perm   155 sec   (3095 perm/sec)   p_kst 1.300000e-03   p_cons 4.978604e-01   p_joint 8.277083e-03

Joint ci ratio: 5.417675e-02	ci left: 1.028493e-02	ci right 1.085965e-02	k: 5179	n:490000
Cons ci ratio: 5.624631e-03	ci left: 4.964031e-01	ci right 4.992051e-01	k: 243924	n:490000
KS ci ratio: 1.544881e-01	ci left: 1.210861e-03	ci right 1.415517e-03	k: 642	n:490000
NDN   490000 perm   160 sec   (3064 perm/sec)   p_kst 1.310204e-03   p_cons 4.978041e-01   p_joint 1.056939e-02

Joint ci ratio: 5.361541e-02	ci left: 1.029430e-02	ci right 1.086339e-02	k: 5288	n:500000
Cons ci ratio: 5.568859e-03	ci left: 4.963491e-01	ci right 4.991229e-01	k: 248868	n:500000
KS ci ratio: 1.524849e-01	ci left: 1.219338e-03	ci right 1.422511e-03	k: 659	n:500000
NDN   500000 perm   165 sec   (3034 perm/sec)   p_kst 1.318000e-03   p_cons 4.977360e-01   p_joint 1.057600e-02

Joint ci ratio: 5.308607e-02	ci left: 1.029752e-02	ci right 1.086100e-02	k: 5394	n:510000
Cons ci ratio: 5.513806e-03	ci left: 4.963797e-01	ci right 4.991262e-01	k: 253854	n:510000
KS ci ratio: 1.503355e-01	ci left: 1.231274e-03	ci right 1.433283e-03	k: 678	n:510000
NDN   510000 perm   170 sec   (3004 perm/sec)   p_kst 1.329412e-03   p_cons 4.977529e-01   p_joint 1.057647e-02

Joint ci ratio: 5.261563e-02	ci left: 1.028356e-02	ci right 1.084114e-02	k: 5491	n:520000
Cons ci ratio: 5.460417e-03	ci left: 4.964035e-01	ci right 4.991234e-01	k: 258837	n:520000
KS ci ratio: 1.489167e-01	ci left: 1.231659e-03	ci right 1.431655e-03	k: 691	n:520000
NDN   520000 perm   175 sec   (2974 perm/sec)   p_kst 1.328846e-03   p_cons 4.977635e-01   p_joint 1.055962e-02

Joint ci ratio: 5.214333e-02	ci left: 1.027574e-02	ci right 1.082774e-02	k: 5591	n:530000
Cons ci ratio: 5.407855e-03	ci left: 4.964907e-01	ci right 4.991848e-01	k: 263854	n:530000
KS ci ratio: 1.478527e-01	ci left: 1.226588e-03	ci right 1.424211e-03	k: 701	n:530000
NDN   530000 perm   180 sec   (2943 perm/sec)   p_kst 1.322642e-03   p_cons 4.978377e-01   p_joint 1.054906e-02

Joint ci ratio: 5.157832e-02	ci left: 1.031028e-02	ci right 1.085796e-02	k: 5714	n:540000
Cons ci ratio: 5.356008e-03	ci left: 4.966470e-01	ci right 4.993160e-01	k: 268910	n:540000
KS ci ratio: 1.466052e-01	ci left: 1.225276e-03	ci right 1.420877e-03	k: 713	n:540000
NDN   540000 perm   185 sec   (2914 perm/sec)   p_kst 1.320370e-03   p_cons 4.979815e-01   p_joint 1.058148e-02

Joint ci ratio: 5.767523e-02	ci left: 8.088795e-03	ci right 8.570951e-03	k: 4580	n:550000
Cons ci ratio: 5.306570e-03	ci left: 4.967086e-01	ci right 4.993532e-01	k: 273917	n:550000
KS ci ratio: 1.456904e-01	ci left: 1.218764e-03	ci right 1.412005e-03	k: 722	n:550000
NDN   550000 perm   191 sec   (2887 perm/sec)   p_kst 1.312727e-03   p_cons 4.980309e-01   p_joint 8.327273e-03

Joint ci ratio: 5.064315e-02	ci left: 1.031755e-02	ci right 1.085539e-02	k: 5927	n:560000
Cons ci ratio: 5.259884e-03	ci left: 4.966342e-01	ci right 4.992551e-01	k: 278849	n:560000
KS ci ratio: 1.442020e-01	ci left: 1.222815e-03	ci right 1.414547e-03	k: 737	n:560000
NDN   560000 perm   196 sec   (2859 perm/sec)   p_kst 1.316071e-03   p_cons 4.979446e-01   p_joint 1.058393e-02

Joint ci ratio: 5.633562e-02	ci left: 8.185453e-03	ci right 8.661669e-03	k: 4800	n:570000
Cons ci ratio: 5.213183e-03	ci left: 4.966801e-01	ci right 4.992778e-01	k: 283848	n:570000
KS ci ratio: 1.427582e-01	ci left: 1.226733e-03	ci right 1.416990e-03	k: 752	n:570000
NDN   570000 perm   201 sec   (2833 perm/sec)   p_kst 1.319298e-03   p_cons 4.979789e-01   p_joint 8.421053e-03

Joint ci ratio: 5.622767e-02	ci left: 8.076610e-03	ci right 8.545563e-03	k: 4819	n:580000
Cons ci ratio: 5.168007e-03	ci left: 4.966951e-01	ci right 4.992704e-01	k: 288830	n:580000
KS ci ratio: 1.415417e-01	ci left: 1.227199e-03	ci right 1.415770e-03	k: 765	n:580000
NDN   580000 perm   207 sec   (2806 perm/sec)   p_kst 1.318966e-03   p_cons 4.979828e-01   p_joint 8.308621e-03

Joint ci ratio: 5.578415e-02	ci left: 8.068398e-03	ci right 8.533060e-03	k: 4896	n:590000
Cons ci ratio: 5.123864e-03	ci left: 4.967217e-01	ci right 4.992750e-01	k: 293819	n:590000
KS ci ratio: 1.401756e-01	ci left: 1.230927e-03	ci right 1.418093e-03	k: 780	n:590000
NDN   590000 perm   212 sec   (2777 perm/sec)   p_kst 1.322034e-03   p_cons 4.979983e-01   p_joint 8.298305e-03

Joint ci ratio: 5.527258e-02	ci left: 8.083487e-03	ci right 8.544613e-03	k: 4987	n:600000
Cons ci ratio: 5.081325e-03	ci left: 4.966990e-01	ci right 4.992310e-01	k: 298779	n:600000
KS ci ratio: 1.393754e-01	ci left: 1.224887e-03	ci right 1.409982e-03	k: 789	n:600000
NDN   600000 perm   219 sec   (2746 perm/sec)   p_kst 1.315000e-03   p_cons 4.979650e-01   p_joint 8.311667e-03

Joint ci ratio: 5.475309e-02	ci left: 8.104569e-03	ci right 8.562414e-03	k: 5082	n:610000
Cons ci ratio: 5.039530e-03	ci left: 4.967068e-01	ci right 4.992178e-01	k: 303757	n:610000
KS ci ratio: 1.379847e-01	ci left: 1.230126e-03	ci right 1.414006e-03	k: 805	n:610000
NDN   610000 perm   224 sec   (2721 perm/sec)   p_kst 1.319672e-03   p_cons 4.979623e-01   p_joint 8.331148e-03

Joint ci ratio: 5.426383e-02	ci left: 8.120216e-03	ci right 8.574719e-03	k: 5174	n:620000
Cons ci ratio: 4.998879e-03	ci left: 4.967014e-01	ci right 4.991922e-01	k: 308727	n:620000
KS ci ratio: 1.368017e-01	ci left: 1.232090e-03	ci right 1.414556e-03	k: 819	n:620000
NDN   620000 perm   230 sec   (2696 perm/sec)   p_kst 1.320968e-03   p_cons 4.979468e-01   p_joint 8.345161e-03

Joint ci ratio: 5.378231e-02	ci left: 8.136951e-03	ci right 8.588223e-03	k: 5267	n:630000
Cons ci ratio: 4.957936e-03	ci left: 4.968233e-01	ci right 4.992942e-01	k: 313777	n:630000
KS ci ratio: 1.361398e-01	ci left: 1.224798e-03	ci right 1.405235e-03	k: 827	n:630000
NDN   630000 perm   236 sec   (2672 perm/sec)   p_kst 1.312698e-03   p_cons 4.980587e-01   p_joint 8.360317e-03

Joint ci ratio: 5.333847e-02	ci left: 8.145470e-03	ci right 8.593372e-03	k: 5355	n:640000
Cons ci ratio: 4.918536e-03	ci left: 4.968852e-01	ci right 4.993367e-01	k: 318791	n:640000
KS ci ratio: 1.352446e-01	ci left: 1.222264e-03	ci right 1.401049e-03	k: 838	n:640000
NDN   640000 perm   242 sec   (2647 perm/sec)   p_kst 1.309375e-03   p_cons 4.981109e-01   p_joint 8.367187e-03

Joint ci ratio: 5.291524e-02	ci left: 8.150706e-03	ci right 8.595231e-03	k: 5441	n:650000
Cons ci ratio: 4.881518e-03	ci left: 4.967960e-01	ci right 4.992286e-01	k: 323708	n:650000
KS ci ratio: 1.339729e-01	ci left: 1.227247e-03	ci right 1.404938e-03	k: 854	n:650000
NDN   650000 perm   248 sec   (2621 perm/sec)   p_kst 1.313846e-03   p_cons 4.980123e-01   p_joint 8.370769e-03

Joint ci ratio: 5.256910e-02	ci left: 8.134861e-03	ci right 8.575532e-03	k: 5513	n:660000
Cons ci ratio: 4.845264e-03	ci left: 4.967157e-01	ci right 4.991298e-01	k: 328629	n:660000
KS ci ratio: 1.330426e-01	ci left: 1.226227e-03	ci right 1.402440e-03	k: 866	n:660000
NDN   660000 perm   254 sec   (2597 perm/sec)   p_kst 1.312121e-03   p_cons 4.979227e-01   p_joint 8.353030e-03

Joint ci ratio: 5.214032e-02	ci left: 8.147489e-03	ci right 8.585136e-03	k: 5604	n:670000
Cons ci ratio: 4.809762e-03	ci left: 4.966423e-01	ci right 4.990383e-01	k: 333553	n:670000
KS ci ratio: 1.319812e-01	ci left: 1.228128e-03	ci right 1.403096e-03	k: 880	n:670000
NDN   670000 perm   260 sec   (2574 perm/sec)   p_kst 1.313433e-03   p_cons 4.978403e-01   p_joint 8.364179e-03

Joint ci ratio: 5.173102e-02	ci left: 8.156857e-03	ci right 8.591465e-03	k: 5693	n:680000
Cons ci ratio: 4.773934e-03	ci left: 4.966859e-01	ci right 4.990641e-01	k: 338555	n:680000
KS ci ratio: 1.310915e-01	ci left: 1.227133e-03	ci right 1.400689e-03	k: 892	n:680000
NDN   680000 perm   267 sec   (2551 perm/sec)   p_kst 1.311765e-03   p_cons 4.978750e-01   p_joint 8.372059e-03

Joint ci ratio: 5.134017e-02	ci left: 8.163104e-03	ci right 8.594662e-03	k: 5780	n:690000
Cons ci ratio: 4.738963e-03	ci left: 4.967210e-01	ci right 4.990819e-01	k: 343552	n:690000
KS ci ratio: 1.303640e-01	ci left: 1.223367e-03	ci right 1.395356e-03	k: 902	n:690000
NDN   690000 perm   273 sec   (2529 perm/sec)   p_kst 1.307246e-03   p_cons 4.979014e-01   p_joint 8.376812e-03

Joint ci ratio: 5.090121e-02	ci left: 8.187522e-03	ci right 8.616561e-03	k: 5880	n:700000
Cons ci ratio: 4.704912e-03	ci left: 4.967380e-01	ci right 4.990820e-01	k: 348537	n:700000
KS ci ratio: 1.294356e-01	ci left: 1.223859e-03	ci right 1.394597e-03	k: 915	n:700000
NDN   700000 perm   279 sec   (2508 perm/sec)   p_kst 1.307143e-03   p_cons 4.979100e-01   p_joint 8.400000e-03

Joint ci ratio: 5.052873e-02	ci left: 8.193187e-03	ci right 8.619289e-03	k: 5967	n:710000
Cons ci ratio: 4.671899e-03	ci left: 4.967208e-01	ci right 4.990482e-01	k: 353498	n:710000
KS ci ratio: 1.284576e-01	ci left: 1.225703e-03	ci right 1.395309e-03	k: 929	n:710000
NDN   710000 perm   286 sec   (2486 perm/sec)   p_kst 1.308451e-03   p_cons 4.978845e-01   p_joint 8.404225e-03

Joint ci ratio: 5.018521e-02	ci left: 8.191848e-03	ci right 8.614900e-03	k: 6049	n:720000
Cons ci ratio: 4.640346e-03	ci left: 4.966208e-01	ci right 4.989320e-01	k: 358399	n:720000
KS ci ratio: 1.276368e-01	ci left: 1.224813e-03	ci right 1.393130e-03	k: 941	n:720000
NDN   720000 perm   292 sec   (2464 perm/sec)   p_kst 1.306944e-03   p_cons 4.977764e-01   p_joint 8.401389e-03

Joint ci ratio: 4.984450e-02	ci left: 8.191907e-03	ci right 8.612008e-03	k: 6132	n:730000
Cons ci ratio: 4.607554e-03	ci left: 4.967263e-01	ci right 4.990216e-01	k: 363448	n:730000
KS ci ratio: 1.270318e-01	ci left: 1.219970e-03	ci right 1.386767e-03	k: 950	n:730000
NDN   730000 perm   299 sec   (2444 perm/sec)   p_kst 1.301370e-03   p_cons 4.978740e-01   p_joint 8.400000e-03

Joint ci ratio: 4.955890e-02	ci left: 8.175958e-03	ci right 8.592769e-03	k: 6203	n:740000
Cons ci ratio: 4.576968e-03	ci left: 4.966628e-01	ci right 4.989426e-01	k: 368374	n:740000
KS ci ratio: 1.263036e-01	ci left: 1.217878e-03	ci right 1.383363e-03	k: 961	n:740000
NDN   740000 perm   305 sec   (2424 perm/sec)   p_kst 1.298649e-03   p_cons 4.978027e-01   p_joint 8.382432e-03

Joint ci ratio: 4.916766e-02	ci left: 8.197318e-03	ci right 8.611826e-03	k: 6302	n:750000
Cons ci ratio: 4.547093e-03	ci left: 4.965891e-01	ci right 4.988536e-01	k: 373291	n:750000
KS ci ratio: 1.255232e-01	ci left: 1.217135e-03	ci right 1.381422e-03	k: 973	n:750000
NDN   750000 perm   312 sec   (2404 perm/sec)   p_kst 1.297333e-03   p_cons 4.977213e-01   p_joint 8.402667e-03

Joint ci ratio: 4.974257e-02	ci left: 7.903597e-03	ci right 8.308060e-03	k: 6159	n:760000
Cons ci ratio: 4.516950e-03	ci left: 4.966108e-01	ci right 4.988603e-01	k: 378279	n:760000
KS ci ratio: 1.245045e-01	ci left: 1.221515e-03	ci right 1.384956e-03	k: 989	n:760000
NDN   760000 perm   319 sec   (2383 perm/sec)   p_kst 1.301316e-03   p_cons 4.977355e-01   p_joint 8.103947e-03

Joint ci ratio: 4.940675e-02	ci left: 7.908693e-03	ci right 8.310606e-03	k: 6243	n:770000
Cons ci ratio: 4.488064e-03	ci left: 4.965579e-01	ci right 4.987928e-01	k: 383210	n:770000
KS ci ratio: 1.235717e-01	ci left: 1.224527e-03	ci right 1.387054e-03	k: 1004	n:770000
NDN   770000 perm   326 sec   (2360 perm/sec)   p_kst 1.303896e-03   p_cons 4.976753e-01   p_joint 8.107792e-03

Joint ci ratio: 4.909329e-02	ci left: 7.908600e-03	ci right 8.307886e-03	k: 6323	n:780000
Cons ci ratio: 4.458959e-03	ci left: 4.965923e-01	ci right 4.988128e-01	k: 388208	n:780000
KS ci ratio: 1.226596e-01	ci left: 1.227467e-03	ci right 1.389094e-03	k: 1019	n:780000
NDN   780000 perm   333 sec   (2341 perm/sec)   p_kst 1.306410e-03   p_cons 4.977026e-01   p_joint 8.106410e-03

Joint ci ratio: 4.880877e-02	ci left: 7.901015e-03	ci right 8.297541e-03	k: 6397	n:790000
Cons ci ratio: 4.430962e-03	ci left: 4.965639e-01	ci right 4.987703e-01	k: 393157	n:790000
KS ci ratio: 1.221223e-01	ci left: 1.222973e-03	ci right 1.383251e-03	k: 1028	n:790000
NDN   790000 perm   340 sec   (2323 perm/sec)   p_kst 1.301266e-03   p_cons 4.976671e-01   p_joint 8.097468e-03

Joint ci ratio: 4.759996e-02	ci left: 8.206106e-03	ci right 8.607466e-03	k: 6724	n:800000
Cons ci ratio: 4.403707e-03	ci left: 4.965112e-01	ci right 4.987038e-01	k: 398086	n:800000
KS ci ratio: 1.215334e-01	ci left: 1.219805e-03	ci right 1.378842e-03	k: 1038	n:800000
NDN   800000 perm   347 sec   (2303 perm/sec)   p_kst 1.297500e-03   p_cons 4.976075e-01   p_joint 8.405000e-03

Joint ci ratio: 4.736510e-02	ci left: 8.186528e-03	ci right 8.584901e-03	k: 6791	n:810000
Cons ci ratio: 4.376580e-03	ci left: 4.965019e-01	ci right 4.986808e-01	k: 403049	n:810000
KS ci ratio: 1.210108e-01	ci left: 1.215519e-03	ci right 1.373267e-03	k: 1047	n:810000
NDN   810000 perm   355 sec   (2284 perm/sec)   p_kst 1.292593e-03   p_cons 4.975914e-01   p_joint 8.383951e-03

Joint ci ratio: 4.705075e-02	ci left: 8.196359e-03	ci right 8.592491e-03	k: 6882	n:820000
Cons ci ratio: 4.351530e-03	ci left: 4.963111e-01	ci right 4.984767e-01	k: 407863	n:820000
KS ci ratio: 1.202671e-01	ci left: 1.216071e-03	ci right 1.372852e-03	k: 1060	n:820000
NDN   820000 perm   362 sec   (2267 perm/sec)   p_kst 1.292683e-03   p_cons 4.973939e-01   p_joint 8.392683e-03

Joint ci ratio: 4.674595e-02	ci left: 8.204771e-03	ci right 8.598671e-03	k: 6972	n:830000
Cons ci ratio: 4.325768e-03	ci left: 4.962563e-01	ci right 4.984088e-01	k: 412786	n:830000
KS ci ratio: 1.195370e-01	ci left: 1.216612e-03	ci right 1.372444e-03	k: 1073	n:830000
NDN   830000 perm   369 sec   (2250 perm/sec)   p_kst 1.292771e-03   p_cons 4.973325e-01   p_joint 8.400000e-03

Joint ci ratio: 4.642380e-02	ci left: 8.221228e-03	ci right 8.613126e-03	k: 7069	n:840000
Cons ci ratio: 4.300365e-03	ci left: 4.962135e-01	ci right 4.983532e-01	k: 417718	n:840000
KS ci ratio: 1.184388e-01	ci left: 1.225230e-03	ci right 1.380623e-03	k: 1093	n:840000
NDN   840000 perm   376 sec   (2232 perm/sec)   p_kst 1.301190e-03   p_cons 4.972833e-01   p_joint 8.415476e-03

Joint ci ratio: 4.613095e-02	ci left: 8.229165e-03	ci right 8.618902e-03	k: 7159	n:850000
Cons ci ratio: 4.275767e-03	ci left: 4.961294e-01	ci right 4.982565e-01	k: 422614	n:850000
KS ci ratio: 1.176881e-01	ci left: 1.226800e-03	ci right 1.381337e-03	k: 1107	n:850000
NDN   850000 perm   384 sec   (2215 perm/sec)   p_kst 1.302353e-03   p_cons 4.971929e-01   p_joint 8.422353e-03

Joint ci ratio: 4.583720e-02	ci left: 8.239225e-03	ci right 8.626887e-03	k: 7251	n:860000
Cons ci ratio: 4.250301e-03	ci left: 4.961985e-01	ci right 4.983131e-01	k: 427640	n:860000
KS ci ratio: 1.169515e-01	ci left: 1.228336e-03	ci right 1.382031e-03	k: 1121	n:860000
NDN   860000 perm   391 sec   (2198 perm/sec)   p_kst 1.303488e-03   p_cons 4.972558e-01   p_joint 8.431395e-03

Joint ci ratio: 4.558342e-02	ci left: 8.236561e-03	ci right 8.621896e-03	k: 7332	n:870000
Cons ci ratio: 4.225245e-03	ci left: 4.962706e-01	ci right 4.983731e-01	k: 432670	n:870000
KS ci ratio: 1.164855e-01	ci left: 1.224260e-03	ci right 1.376793e-03	k: 1130	n:870000
NDN   870000 perm   399 sec   (2182 perm/sec)   p_kst 1.298851e-03   p_cons 4.973218e-01   p_joint 8.427586e-03

Joint ci ratio: 4.531533e-02	ci left: 8.240704e-03	ci right 8.623906e-03	k: 7419	n:880000
Cons ci ratio: 4.201468e-03	ci left: 4.962412e-01	ci right 4.983316e-01	k: 437612	n:880000
KS ci ratio: 1.157712e-01	ci left: 1.225795e-03	ci right 1.377518e-03	k: 1144	n:880000
NDN   880000 perm   406 sec   (2166 perm/sec)   p_kst 1.300000e-03   p_cons 4.972864e-01   p_joint 8.430682e-03

Joint ci ratio: 4.505797e-02	ci left: 8.242538e-03	ci right 8.623593e-03	k: 7504	n:890000
Cons ci ratio: 4.178294e-03	ci left: 4.961877e-01	ci right 4.982663e-01	k: 442532	n:890000
KS ci ratio: 1.152691e-01	ci left: 1.222933e-03	ci right 1.373601e-03	k: 1154	n:890000
NDN   890000 perm   414 sec   (2150 perm/sec)   p_kst 1.296629e-03   p_cons 4.972270e-01   p_joint 8.431461e-03

Joint ci ratio: 4.477223e-02	ci left: 8.256425e-03	ci right 8.635638e-03	k: 7600	n:900000
Cons ci ratio: 4.155120e-03	ci left: 4.961809e-01	ci right 4.982480e-01	k: 447493	n:900000
KS ci ratio: 1.145767e-01	ci left: 1.224454e-03	ci right 1.374341e-03	k: 1168	n:900000
NDN   900000 perm   422 sec   (2133 perm/sec)   p_kst 1.297778e-03   p_cons 4.972144e-01   p_joint 8.444444e-03

Joint ci ratio: 4.450353e-02	ci left: 8.265666e-03	ci right 8.642967e-03	k: 7692	n:910000
Cons ci ratio: 4.132846e-03	ci left: 4.961117e-01	ci right 4.981674e-01	k: 452397	n:910000
KS ci ratio: 1.134653e-01	ci left: 1.235552e-03	ci right 1.385233e-03	k: 1191	n:910000
NDN   910000 perm   430 sec   (2118 perm/sec)   p_kst 1.308791e-03   p_cons 4.971396e-01   p_joint 8.452747e-03

Joint ci ratio: 4.427690e-02	ci left: 8.260738e-03	ci right 8.635845e-03	k: 7771	n:920000
Cons ci ratio: 4.110488e-03	ci left: 4.960973e-01	ci right 4.981418e-01	k: 457350	n:920000
KS ci ratio: 1.127112e-01	ci left: 1.239022e-03	ci right 1.388059e-03	k: 1207	n:920000
NDN   920000 perm   438 sec   (2103 perm/sec)   p_kst 1.311957e-03   p_cons 4.971196e-01   p_joint 8.446739e-03

Joint ci ratio: 4.399158e-02	ci left: 8.279318e-03	ci right 8.652785e-03	k: 7872	n:930000
Cons ci ratio: 4.086968e-03	ci left: 4.962693e-01	ci right 4.983027e-01	k: 462476	n:930000
KS ci ratio: 1.122477e-01	ci left: 1.236149e-03	ci right 1.384189e-03	k: 1217	n:930000
NDN   930000 perm   446 sec   (2087 perm/sec)   p_kst 1.308602e-03   p_cons 4.972860e-01   p_joint 8.464516e-03

Joint ci ratio: 4.375046e-02	ci left: 8.282779e-03	ci right 8.654302e-03	k: 7959	n:940000
Cons ci ratio: 4.065161e-03	ci left: 4.962760e-01	ci right 4.982985e-01	k: 467450	n:940000
KS ci ratio: 1.114271e-01	ci left: 1.241612e-03	ci right 1.389148e-03	k: 1235	n:940000
NDN   940000 perm   454 sec   (2072 perm/sec)   p_kst 1.313830e-03   p_cons 4.972872e-01   p_joint 8.467021e-03

Joint ci ratio: 4.351054e-02	ci left: 8.287213e-03	ci right 8.656846e-03	k: 8047	n:950000
Cons ci ratio: 4.043461e-03	ci left: 4.963120e-01	ci right 4.983239e-01	k: 472452	n:950000
KS ci ratio: 1.106684e-01	ci left: 1.245940e-03	ci right 1.392917e-03	k: 1252	n:950000
NDN   950000 perm   462 sec   (2056 perm/sec)   p_kst 1.317895e-03   p_cons 4.973179e-01   p_joint 8.470526e-03

Joint ci ratio: 4.330405e-02	ci left: 8.280225e-03	ci right 8.647750e-03	k: 8124	n:960000
Cons ci ratio: 4.021585e-03	ci left: 4.964118e-01	ci right 4.984132e-01	k: 477516	n:960000
KS ci ratio: 1.100552e-01	ci left: 1.247143e-03	ci right 1.393393e-03	k: 1266	n:960000
NDN   960000 perm   470 sec   (2043 perm/sec)   p_kst 1.318750e-03   p_cons 4.974125e-01   p_joint 8.462500e-03

Joint ci ratio: 4.311638e-02	ci left: 8.267266e-03	ci right 8.632586e-03	k: 8195	n:970000
Cons ci ratio: 4.000877e-03	ci left: 4.964076e-01	ci right 4.983986e-01	k: 482481	n:970000
KS ci ratio: 1.096237e-01	ci left: 1.244311e-03	ci right 1.389620e-03	k: 1276	n:970000
NDN   970000 perm   478 sec   (2029 perm/sec)   p_kst 1.315464e-03   p_cons 4.974031e-01   p_joint 8.448454e-03

Joint ci ratio: 4.289974e-02	ci left: 8.266689e-03	ci right 8.630103e-03	k: 8278	n:980000
Cons ci ratio: 3.979519e-03	ci left: 4.965249e-01	ci right 4.985057e-01	k: 487565	n:980000
KS ci ratio: 1.090276e-01	ci left: 1.245510e-03	ci right 1.390117e-03	k: 1290	n:980000
NDN   980000 perm   486 sec   (2015 perm/sec)   p_kst 1.316327e-03   p_cons 4.975153e-01   p_joint 8.446939e-03

Joint ci ratio: 4.265805e-02	ci left: 8.277122e-03	ci right 8.638894e-03	k: 8372	n:990000
Cons ci ratio: 3.960106e-03	ci left: 4.964368e-01	ci right 4.984076e-01	k: 492448	n:990000
KS ci ratio: 1.083581e-01	ci left: 1.248651e-03	ci right 1.392676e-03	k: 1306	n:990000
NDN   990000 perm   495 sec   (2001 perm/sec)   p_kst 1.319192e-03   p_cons 4.974222e-01   p_joint 8.456566e-03

Joint ci ratio: 4.245580e-02	ci left: 8.273499e-03	ci right 8.633357e-03	k: 8452	n:1000000
Cons ci ratio: 3.940014e-03	ci left: 4.964725e-01	ci right 4.984335e-01	k: 497453	n:1000000
KS ci ratio: 1.078641e-01	ci left: 1.247840e-03	ci right 1.391074e-03	k: 1318	n:1000000
NDN   1000000 perm   503 sec   (1988 perm/sec)   p_kst 1.318000e-03   p_cons 4.974530e-01   p_joint 8.452000e-03

Joint ci ratio: 4.219163e-02	ci left: 8.295425e-03	ci right 8.653937e-03	k: 8558	n:1010000
Cons ci ratio: 3.919727e-03	ci left: 4.965709e-01	ci right 4.985221e-01	k: 502522	n:1010000
KS ci ratio: 1.073768e-01	ci left: 1.247046e-03	ci right 1.389501e-03	k: 1330	n:1010000
NDN   1010000 perm   512 sec   (1974 perm/sec)   p_kst 1.316832e-03   p_cons 4.975465e-01   p_joint 8.473267e-03

Joint ci ratio: 4.198612e-02	ci left: 8.295584e-03	ci right 8.652314e-03	k: 8642	n:1020000
Cons ci ratio: 3.900224e-03	ci left: 4.966067e-01	ci right 4.985483e-01	k: 507529	n:1020000
KS ci ratio: 1.070158e-01	ci left: 1.243407e-03	ci right 1.384939e-03	k: 1339	n:1020000
NDN   1020000 perm   520 sec   (1961 perm/sec)   p_kst 1.312745e-03   p_cons 4.975775e-01   p_joint 8.472549e-03

Joint ci ratio: 4.176669e-02	ci left: 8.302469e-03	ci right 8.657585e-03	k: 8733	n:1030000
Cons ci ratio: 3.881688e-03	ci left: 4.965543e-01	ci right 4.984865e-01	k: 512446	n:1030000
KS ci ratio: 1.063824e-01	ci left: 1.246455e-03	ci right 1.387441e-03	k: 1355	n:1030000
NDN   1030000 perm   529 sec   (1948 perm/sec)   p_kst 1.315534e-03   p_cons 4.975204e-01   p_joint 8.478641e-03

Joint ci ratio: 4.157443e-02	ci left: 8.299711e-03	ci right 8.653035e-03	k: 8814	n:1040000
Cons ci ratio: 3.862789e-03	ci left: 4.965838e-01	ci right 4.985066e-01	k: 517447	n:1040000
KS ci ratio: 1.058761e-01	ci left: 1.246638e-03	ci right 1.386932e-03	k: 1368	n:1040000
NDN   1040000 perm   538 sec   (1934 perm/sec)   p_kst 1.315385e-03   p_cons 4.975452e-01   p_joint 8.475000e-03

Joint ci ratio: 4.133562e-02	ci left: 8.316803e-03	ci right 8.668773e-03	k: 8916	n:1050000
Cons ci ratio: 3.844413e-03	ci left: 4.965803e-01	ci right 4.984940e-01	k: 522414	n:1050000
KS ci ratio: 1.053770e-01	ci left: 1.246819e-03	ci right 1.386431e-03	k: 1381	n:1050000
NDN   1050000 perm   546 sec   (1922 perm/sec)   p_kst 1.315238e-03   p_cons 4.975371e-01   p_joint 8.491429e-03

Joint ci ratio: 4.113310e-02	ci left: 8.320506e-03	ci right 8.670867e-03	k: 9004	n:1060000
Cons ci ratio: 3.826347e-03	ci left: 4.965703e-01	ci right 4.984749e-01	k: 527374	n:1060000
KS ci ratio: 1.046971e-01	ci left: 1.251592e-03	ci right 1.390779e-03	k: 1399	n:1060000
NDN   1060000 perm   555 sec   (1909 perm/sec)   p_kst 1.319811e-03   p_cons 4.975226e-01   p_joint 8.494340e-03

Joint ci ratio: 4.091763e-02	ci left: 8.330619e-03	ci right 8.679526e-03	k: 9099	n:1070000
Cons ci ratio: 3.807921e-03	ci left: 4.966410e-01	ci right 4.985366e-01	k: 532420	n:1070000
KS ci ratio: 1.042884e-01	ci left: 1.249906e-03	ci right 1.388330e-03	k: 1410	n:1070000
NDN   1070000 perm   564 sec   (1896 perm/sec)   p_kst 1.317757e-03   p_cons 4.975888e-01   p_joint 8.503738e-03

Joint ci ratio: 4.072339e-02	ci left: 8.333218e-03	ci right 8.680537e-03	k: 9186	n:1080000
Cons ci ratio: 3.789471e-03	ci left: 4.967482e-01	ci right 4.986351e-01	k: 537507	n:1080000
KS ci ratio: 1.037383e-01	ci left: 1.251861e-03	ci right 1.389725e-03	k: 1425	n:1080000
NDN   1080000 perm   573 sec   (1884 perm/sec)   p_kst 1.319444e-03   p_cons 4.976917e-01   p_joint 8.505556e-03

Joint ci ratio: 4.052969e-02	ci left: 8.336680e-03	ci right 8.682453e-03	k: 9274	n:1090000
Cons ci ratio: 3.771674e-03	ci left: 4.968022e-01	ci right 4.986804e-01	k: 542538	n:1090000
KS ci ratio: 1.031611e-01	ci left: 1.254675e-03	ci right 1.392033e-03	k: 1441	n:1090000
NDN   1090000 perm   582 sec   (1872 perm/sec)   p_kst 1.322018e-03   p_cons 4.977413e-01   p_joint 8.508257e-03

Joint ci ratio: 4.038878e-02	ci left: 8.319384e-03	ci right 8.663212e-03	k: 9339	n:1100000
Cons ci ratio: 3.754896e-03	ci left: 4.967525e-01	ci right 4.986221e-01	k: 547456	n:1100000
KS ci ratio: 1.027699e-01	ci left: 1.253011e-03	ci right 1.389636e-03	k: 1452	n:1100000
NDN   1100000 perm   591 sec   (1860 perm/sec)   p_kst 1.320000e-03   p_cons 4.976873e-01   p_joint 8.490000e-03

Joint ci ratio: 4.023209e-02	ci left: 8.309537e-03	ci right 8.651594e-03	k: 9412	n:1110000
Cons ci ratio: 3.737708e-03	ci left: 4.967883e-01	ci right 4.986495e-01	k: 552468	n:1110000
KS ci ratio: 1.024533e-01	ci left: 1.249623e-03	ci right 1.385433e-03	k: 1461	n:1110000
NDN   1110000 perm   601 sec   (1848 perm/sec)   p_kst 1.316216e-03   p_cons 4.977189e-01   p_joint 8.479279e-03

Joint ci ratio: 4.005165e-02	ci left: 8.310476e-03	ci right 8.651002e-03	k: 9497	n:1120000
Cons ci ratio: 3.721736e-03	ci left: 4.966914e-01	ci right 4.985443e-01	k: 557332	n:1120000
KS ci ratio: 1.017937e-01	ci left: 1.254997e-03	ci right 1.390460e-03	k: 1480	n:1120000
NDN   1120000 perm   610 sec   (1836 perm/sec)   p_kst 1.321429e-03   p_cons 4.976179e-01   p_joint 8.479464e-03

Joint ci ratio: 3.989463e-02	ci left: 8.302639e-03	ci right 8.641480e-03	k: 9572	n:1130000
Cons ci ratio: 3.705102e-03	ci left: 4.967131e-01	ci right 4.985577e-01	k: 562328	n:1130000
KS ci ratio: 1.014179e-01	ci left: 1.253378e-03	ci right 1.388137e-03	k: 1491	n:1130000
NDN   1130000 perm   619 sec   (1825 perm/sec)   p_kst 1.319469e-03   p_cons 4.976354e-01   p_joint 8.470796e-03

Joint ci ratio: 3.973736e-02	ci left: 8.295811e-03	ci right 8.633009e-03	k: 9648	n:1140000
Cons ci ratio: 3.688436e-03	ci left: 4.967686e-01	ci right 4.986051e-01	k: 567363	n:1140000
KS ci ratio: 1.010125e-01	ci left: 1.252643e-03	ci right 1.386753e-03	k: 1503	n:1140000
NDN   1140000 perm   629 sec   (1814 perm/sec)   p_kst 1.318421e-03   p_cons 4.976868e-01   p_joint 8.463158e-03

Joint ci ratio: 3.954913e-02	ci left: 8.302882e-03	ci right 8.638732e-03	k: 9740	n:1150000
Cons ci ratio: 3.672376e-03	ci left: 4.967710e-01	ci right 4.985995e-01	k: 572338	n:1150000
KS ci ratio: 1.007452e-01	ci left: 1.248531e-03	ci right 1.381827e-03	k: 1511	n:1150000
NDN   1150000 perm   638 sec   (1802 perm/sec)   p_kst 1.313913e-03   p_cons 4.976852e-01   p_joint 8.469565e-03

Joint ci ratio: 3.937567e-02	ci left: 8.304712e-03	ci right 8.639129e-03	k: 9826	n:1160000
Cons ci ratio: 3.656052e-03	ci left: 4.968380e-01	ci right 4.986586e-01	k: 577388	n:1160000
KS ci ratio: 1.003149e-01	ci left: 1.248693e-03	ci right 1.381403e-03	k: 1524	n:1160000
NDN   1160000 perm   647 sec   (1792 perm/sec)   p_kst 1.313793e-03   p_cons 4.977483e-01   p_joint 8.470690e-03

Joint ci ratio: 3.924843e-02	ci left: 8.287893e-03	ci right 8.620530e-03	k: 9890	n:1170000
Cons ci ratio: 3.639962e-03	ci left: 4.969013e-01	ci right 4.987141e-01	k: 582435	n:1170000
KS ci ratio: 1.000203e-01	ci left: 1.245520e-03	ci right 1.377481e-03	k: 1533	n:1170000
NDN   1170000 perm   657 sec   (1781 perm/sec)   p_kst 1.310256e-03   p_cons 4.978077e-01   p_joint 8.452991e-03

Joint ci ratio: 3.912240e-02	ci left: 8.271361e-03	ci right 8.602245e-03	k: 9954	n:1180000
Cons ci ratio: 3.624309e-03	ci left: 4.969322e-01	ci right 4.987373e-01	k: 587445	n:1180000
KS ci ratio: 9.972839e-02	ci left: 1.242401e-03	ci right 1.373625e-03	k: 1542	n:1180000
NDN   1180000 perm   667 sec   (1770 perm/sec)   p_kst 1.306780e-03   p_cons 4.978347e-01   p_joint 8.435593e-03

Outputting figure to mutsig2_images.part000000000113/NDN.2_970_1180000_0.0013068_0.49783_0.0084356.png
                gene_name: NDN
               theta_stop: 0.100 
                    nperm: 1180000 
                     p_ks: 0.0013 
        ci_ks_bounds_left: 0.0012 
       ci_ks_bounds_right: 0.0014 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.0084 
     ci_joint_bounds_left: 0.0083 
    ci_joint_bounds_right: 0.0086 

Current progress: 67 percent done.
NEB
Processing conservation and coverage...
37% 75% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 5.722203e-02	ci left: 3.101662e-01	ci right 3.285391e-01	k: 3193	n:10000
KS ci ratio: 2.262761e+00	ci left: 2.422185e-05	ci right 7.222801e-04	k: 2	n:10000
NEB   10000 perm   4 sec   (2606 perm/sec)   p_kst 2.000000e-04   p_cons 3.193000e-01   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 4.035074e-02	ci left: 3.140836e-01	ci right 3.270686e-01	k: 6411	n:20000
KS ci ratio: 2.262987e+00	ci left: 1.211069e-05	ci right 3.611872e-04	k: 2	n:20000
NEB   20000 perm   8 sec   (2363 perm/sec)   p_kst 1.000000e-04   p_cons 3.205500e-01   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 3.293617e-02	ci left: 3.154193e-01	ci right 3.260155e-01	k: 9621	n:30000
KS ci ratio: 2.263062e+00	ci left: 8.073745e-06	ci right 2.408020e-04	k: 2	n:30000
NEB   30000 perm   13 sec   (2331 perm/sec)   p_kst 6.666667e-05   p_cons 3.207000e-01   p_joint 0

Joint ci ratio: 1.752946e+00	ci left: 2.724728e-05	ci right 2.560197e-04	k: 4	n:40000
Cons ci ratio: 2.858642e-02	ci left: 3.151803e-01	ci right 3.243459e-01	k: 12790	n:40000
KS ci ratio: 1.752946e+00	ci left: 2.724728e-05	ci right 2.560197e-04	k: 4	n:40000
NEB   40000 perm   17 sec   (2305 perm/sec)   p_kst 1.000000e-04   p_cons 3.197500e-01   p_joint 1.000000e-04

Joint ci ratio: 1.752972e+00	ci left: 2.179772e-05	ci right 2.048190e-04	k: 4	n:50000
Cons ci ratio: 2.549081e-02	ci left: 3.169881e-01	ci right 3.251927e-01	k: 16054	n:50000
KS ci ratio: 1.752972e+00	ci left: 2.179772e-05	ci right 2.048190e-04	k: 4	n:50000
NEB   50000 perm   22 sec   (2287 perm/sec)   p_kst 8.000000e-05   p_cons 3.210800e-01   p_joint 8.000000e-05

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 2.326182e-02	ci left: 3.174974e-01	ci right 3.249866e-01	k: 19274	n:60000
KS ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
NEB   60000 perm   26 sec   (2269 perm/sec)   p_kst 1.666667e-05   p_cons 3.212333e-01   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 2.151405e-02	ci left: 3.182256e-01	ci right 3.251606e-01	k: 22518	n:70000
KS ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
NEB   70000 perm   31 sec   (2233 perm/sec)   p_kst 1.428571e-05   p_cons 3.216857e-01   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 2.006534e-02	ci left: 3.197349e-01	ci right 3.262280e-01	k: 25838	n:80000
KS ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
NEB   80000 perm   36 sec   (2211 perm/sec)   p_kst 1.250000e-05   p_cons 3.229750e-01   p_joint 0

Joint ci ratio: 1.959946e+00	ci left: 6.874187e-06	ci right 9.741102e-05	k: 3	n:90000
Cons ci ratio: 1.896010e-02	ci left: 3.189476e-01	ci right 3.250639e-01	k: 28980	n:90000
KS ci ratio: 1.959946e+00	ci left: 6.874187e-06	ci right 9.741102e-05	k: 3	n:90000
NEB   90000 perm   41 sec   (2197 perm/sec)   p_kst 3.333333e-05   p_cons 3.220000e-01   p_joint 3.333333e-05

Joint ci ratio: 1.959951e+00	ci left: 6.186764e-06	ci right 8.767020e-05	k: 3	n:100000
Cons ci ratio: 1.797359e-02	ci left: 3.194335e-01	ci right 3.252368e-01	k: 32233	n:100000
KS ci ratio: 1.959951e+00	ci left: 6.186764e-06	ci right 8.767020e-05	k: 3	n:100000
NEB   100000 perm   46 sec   (2180 perm/sec)   p_kst 3.000000e-05   p_cons 3.223300e-01   p_joint 3.000000e-05

Joint ci ratio: 1.959955e+00	ci left: 5.624327e-06	ci right 7.970039e-05	k: 3	n:110000
Cons ci ratio: 1.713586e-02	ci left: 3.196018e-01	ci right 3.251348e-01	k: 35460	n:110000
KS ci ratio: 1.959955e+00	ci left: 5.624327e-06	ci right 7.970039e-05	k: 3	n:110000
NEB   110000 perm   51 sec   (2157 perm/sec)   p_kst 2.727273e-05   p_cons 3.223636e-01   p_joint 2.727273e-05

Joint ci ratio: 1.753033e+00	ci left: 9.082284e-06	ci right 8.534435e-05	k: 4	n:120000
Cons ci ratio: 1.641471e-02	ci left: 3.194979e-01	ci right 3.247940e-01	k: 38657	n:120000
KS ci ratio: 1.753033e+00	ci left: 9.082284e-06	ci right 8.534435e-05	k: 4	n:120000
NEB   120000 perm   56 sec   (2143 perm/sec)   p_kst 3.333333e-05   p_cons 3.221417e-01   p_joint 3.333333e-05

Joint ci ratio: 2.263178e+00	ci left: 1.863154e-06	ci right 5.557340e-05	k: 2	n:130000
Cons ci ratio: 1.578366e-02	ci left: 3.192453e-01	ci right 3.243319e-01	k: 41832	n:130000
KS ci ratio: 1.481575e+00	ci left: 1.693783e-05	ci right 1.004548e-04	k: 6	n:130000
NEB   130000 perm   61 sec   (2128 perm/sec)   p_kst 4.615385e-05   p_cons 3.217846e-01   p_joint 1.538462e-05

Joint ci ratio: 2.263181e+00	ci left: 1.730071e-06	ci right 5.160395e-05	k: 2	n:140000
Cons ci ratio: 1.521647e-02	ci left: 3.191392e-01	ci right 3.240397e-01	k: 45022	n:140000
KS ci ratio: 1.481578e+00	ci left: 1.572797e-05	ci right 9.327961e-05	k: 6	n:140000
NEB   140000 perm   66 sec   (2110 perm/sec)   p_kst 4.285714e-05   p_cons 3.215857e-01   p_joint 1.428571e-05

Joint ci ratio: 1.959967e+00	ci left: 4.124500e-06	ci right 5.844736e-05	k: 3	n:150000
Cons ci ratio: 1.470993e-02	ci left: 3.189436e-01	ci right 3.236766e-01	k: 48196	n:150000
KS ci ratio: 1.306623e+00	ci left: 2.302582e-05	ci right 1.050852e-04	k: 8	n:150000
NEB   150000 perm   72 sec   (2094 perm/sec)   p_kst 5.333333e-05   p_cons 3.213067e-01   p_joint 2.000000e-05

Joint ci ratio: 1.959969e+00	ci left: 3.866717e-06	ci right 5.479447e-05	k: 3	n:160000
Cons ci ratio: 1.423368e-02	ci left: 3.192989e-01	ci right 3.238825e-01	k: 51454	n:160000
KS ci ratio: 1.306626e+00	ci left: 2.158669e-05	ci right 9.851754e-05	k: 8	n:160000
NEB   160000 perm   77 sec   (2079 perm/sec)   p_kst 5.000000e-05   p_cons 3.215875e-01   p_joint 1.875000e-05

Joint ci ratio: 1.959971e+00	ci left: 3.639263e-06	ci right 5.157132e-05	k: 3	n:170000
Cons ci ratio: 1.380329e-02	ci left: 3.195383e-01	ci right 3.239854e-01	k: 54699	n:170000
KS ci ratio: 1.306628e+00	ci left: 2.031687e-05	ci right 9.272253e-05	k: 8	n:170000
NEB   170000 perm   82 sec   (2063 perm/sec)   p_kst 4.705882e-05   p_cons 3.217588e-01   p_joint 1.764706e-05

Joint ci ratio: 1.959973e+00	ci left: 3.437081e-06	ci right 4.870629e-05	k: 3	n:180000
Cons ci ratio: 1.341962e-02	ci left: 3.194312e-01	ci right 3.237523e-01	k: 57886	n:180000
KS ci ratio: 1.239575e+00	ci left: 2.286343e-05	ci right 9.491344e-05	k: 9	n:180000
NEB   180000 perm   88 sec   (2046 perm/sec)   p_kst 5.000000e-05   p_cons 3.215889e-01   p_joint 1.666667e-05

Joint ci ratio: 1.959974e+00	ci left: 3.256181e-06	ci right 4.614284e-05	k: 3	n:190000
Cons ci ratio: 1.305681e-02	ci left: 3.196522e-01	ci right 3.238585e-01	k: 61133	n:190000
KS ci ratio: 1.239577e+00	ci left: 2.166008e-05	ci right 8.991811e-05	k: 9	n:190000
NEB   190000 perm   94 sec   (2029 perm/sec)   p_kst 4.736842e-05   p_cons 3.217526e-01   p_joint 1.578947e-05

Joint ci ratio: 1.959976e+00	ci left: 3.093371e-06	ci right 4.383573e-05	k: 3	n:200000
Cons ci ratio: 1.272731e-02	ci left: 3.196678e-01	ci right 3.237673e-01	k: 64343	n:200000
KS ci ratio: 1.239579e+00	ci left: 2.057707e-05	ci right 8.542229e-05	k: 9	n:200000
NEB   200000 perm   99 sec   (2011 perm/sec)   p_kst 4.500000e-05   p_cons 3.217150e-01   p_joint 1.500000e-05

Joint ci ratio: 1.959977e+00	ci left: 2.946067e-06	ci right 4.174835e-05	k: 3	n:210000
Cons ci ratio: 1.242671e-02	ci left: 3.195025e-01	ci right 3.235024e-01	k: 67515	n:210000
KS ci ratio: 1.239580e+00	ci left: 1.959720e-05	ci right 8.135464e-05	k: 9	n:210000
NEB   210000 perm   105 sec   (1998 perm/sec)   p_kst 4.285714e-05   p_cons 3.215000e-01   p_joint 1.428571e-05

Joint ci ratio: 1.753053e+00	ci left: 4.953955e-06	ci right 4.655202e-05	k: 4	n:220000
Cons ci ratio: 1.214708e-02	ci left: 3.193306e-01	ci right 3.232377e-01	k: 70682	n:220000
KS ci ratio: 1.181892e+00	ci left: 2.179743e-05	ci right 8.359093e-05	k: 10	n:220000
NEB   220000 perm   111 sec   (1983 perm/sec)   p_kst 4.545455e-05   p_cons 3.212818e-01   p_joint 1.818182e-05

Joint ci ratio: 1.753054e+00	ci left: 4.738565e-06	ci right 4.452804e-05	k: 4	n:230000
Cons ci ratio: 1.186929e-02	ci left: 3.197693e-01	ci right 3.235917e-01	k: 73986	n:230000
KS ci ratio: 1.181894e+00	ci left: 2.084971e-05	ci right 7.995661e-05	k: 10	n:230000
NEB   230000 perm   117 sec   (1972 perm/sec)   p_kst 4.347826e-05   p_cons 3.216783e-01   p_joint 1.739130e-05

Joint ci ratio: 1.753055e+00	ci left: 4.541124e-06	ci right 4.267273e-05	k: 4	n:240000
Cons ci ratio: 1.160839e-02	ci left: 3.202223e-01	ci right 3.239654e-01	k: 77302	n:240000
KS ci ratio: 1.131576e+00	ci left: 2.288005e-05	ci right 8.200701e-05	k: 11	n:240000
NEB   240000 perm   122 sec   (1960 perm/sec)   p_kst 4.583333e-05   p_cons 3.220917e-01   p_joint 1.666667e-05

Joint ci ratio: 1.753056e+00	ci left: 4.359478e-06	ci right 4.096584e-05	k: 4	n:250000
Cons ci ratio: 1.136365e-02	ci left: 3.206518e-01	ci right 3.243203e-01	k: 80621	n:250000
KS ci ratio: 1.131577e+00	ci left: 2.196484e-05	ci right 7.872679e-05	k: 11	n:250000
NEB   250000 perm   128 sec   (1948 perm/sec)   p_kst 4.400000e-05   p_cons 3.224840e-01   p_joint 1.600000e-05

Joint ci ratio: 1.753057e+00	ci left: 4.191805e-06	ci right 3.939025e-05	k: 4	n:260000
Cons ci ratio: 1.114061e-02	ci left: 3.207802e-01	ci right 3.243777e-01	k: 83870	n:260000
KS ci ratio: 1.131578e+00	ci left: 2.112003e-05	ci right 7.569888e-05	k: 11	n:260000
NEB   260000 perm   134 sec   (1936 perm/sec)   p_kst 4.230769e-05   p_cons 3.225769e-01   p_joint 1.538462e-05

Joint ci ratio: 1.753058e+00	ci left: 4.036553e-06	ci right 3.793137e-05	k: 4	n:270000
Cons ci ratio: 1.093549e-02	ci left: 3.206888e-01	ci right 3.242187e-01	k: 87062	n:270000
KS ci ratio: 1.131579e+00	ci left: 2.033780e-05	ci right 7.289527e-05	k: 11	n:270000
NEB   270000 perm   141 sec   (1921 perm/sec)   p_kst 4.074074e-05   p_cons 3.224519e-01   p_joint 1.481481e-05

Joint ci ratio: 1.753059e+00	ci left: 3.892390e-06	ci right 3.657669e-05	k: 4	n:280000
Cons ci ratio: 1.074156e-02	ci left: 3.205939e-01	ci right 3.240597e-01	k: 90251	n:280000
KS ci ratio: 1.131580e+00	ci left: 1.961144e-05	ci right 7.029190e-05	k: 11	n:280000
NEB   280000 perm   147 sec   (1907 perm/sec)   p_kst 3.928571e-05   p_cons 3.223250e-01   p_joint 1.428571e-05

Joint ci ratio: 1.753059e+00	ci left: 3.758169e-06	ci right 3.531544e-05	k: 4	n:290000
Cons ci ratio: 1.055417e-02	ci left: 3.206473e-01	ci right 3.240528e-01	k: 93481	n:290000
KS ci ratio: 1.131581e+00	ci left: 1.893518e-05	ci right 6.786808e-05	k: 11	n:290000
NEB   290000 perm   153 sec   (1895 perm/sec)   p_kst 3.793103e-05   p_cons 3.223483e-01   p_joint 1.379310e-05

Joint ci ratio: 1.753060e+00	ci left: 3.632896e-06	ci right 3.413827e-05	k: 4	n:300000
Cons ci ratio: 1.038141e-02	ci left: 3.204812e-01	ci right 3.238289e-01	k: 96646	n:300000
KS ci ratio: 1.131582e+00	ci left: 1.830401e-05	ci right 6.560585e-05	k: 11	n:300000
NEB   300000 perm   160 sec   (1879 perm/sec)   p_kst 3.666667e-05   p_cons 3.221533e-01   p_joint 1.333333e-05

Joint ci ratio: 1.753060e+00	ci left: 3.515706e-06	ci right 3.303705e-05	k: 4	n:310000
Cons ci ratio: 1.020842e-02	ci left: 3.206871e-01	ci right 3.239808e-01	k: 99923	n:310000
KS ci ratio: 1.131583e+00	ci left: 1.771355e-05	ci right 6.348956e-05	k: 11	n:310000
NEB   310000 perm   166 sec   (1863 perm/sec)   p_kst 3.548387e-05   p_cons 3.223323e-01   p_joint 1.290323e-05

Joint ci ratio: 1.753061e+00	ci left: 3.405839e-06	ci right 3.200465e-05	k: 4	n:320000
Cons ci ratio: 1.004458e-02	ci left: 3.208462e-01	ci right 3.240883e-01	k: 103189	n:320000
KS ci ratio: 1.087189e+00	ci left: 1.937694e-05	ci right 6.550404e-05	k: 12	n:320000
NEB   320000 perm   173 sec   (1851 perm/sec)   p_kst 3.750000e-05   p_cons 3.224656e-01   p_joint 1.250000e-05

Joint ci ratio: 1.753061e+00	ci left: 3.302632e-06	ci right 3.103482e-05	k: 4	n:330000
Cons ci ratio: 9.891543e-03	ci left: 3.208568e-01	ci right 3.240493e-01	k: 106409	n:330000
KS ci ratio: 1.087189e+00	ci left: 1.878976e-05	ci right 6.351909e-05	k: 12	n:330000
NEB   330000 perm   179 sec   (1839 perm/sec)   p_kst 3.636364e-05   p_cons 3.224515e-01   p_joint 1.212121e-05

Joint ci ratio: 1.753062e+00	ci left: 3.205495e-06	ci right 3.012204e-05	k: 4	n:340000
Cons ci ratio: 9.741488e-03	ci left: 3.210375e-01	ci right 3.241831e-01	k: 109687	n:340000
KS ci ratio: 1.087190e+00	ci left: 1.823711e-05	ci right 6.165091e-05	k: 12	n:340000
NEB   340000 perm   186 sec   (1828 perm/sec)   p_kst 3.529412e-05   p_cons 3.226088e-01   p_joint 1.176471e-05

Joint ci ratio: 1.600317e+00	ci left: 4.638548e-06	ci right 3.333777e-05	k: 5	n:350000
Cons ci ratio: 9.597496e-03	ci left: 3.212340e-01	ci right 3.243347e-01	k: 112974	n:350000
KS ci ratio: 1.047642e+00	ci left: 1.977715e-05	ci right 6.351458e-05	k: 13	n:350000
NEB   350000 perm   193 sec   (1817 perm/sec)   p_kst 3.714286e-05   p_cons 3.227829e-01   p_joint 1.428571e-05

Joint ci ratio: 1.600318e+00	ci left: 4.509699e-06	ci right 3.241173e-05	k: 5	n:360000
Cons ci ratio: 9.463310e-03	ci left: 3.212533e-01	ci right 3.243106e-01	k: 116201	n:360000
KS ci ratio: 1.047642e+00	ci left: 1.922778e-05	ci right 6.175031e-05	k: 13	n:360000
NEB   360000 perm   199 sec   (1806 perm/sec)   p_kst 3.611111e-05   p_cons 3.227806e-01   p_joint 1.388889e-05

Joint ci ratio: 1.600318e+00	ci left: 4.387815e-06	ci right 3.153575e-05	k: 5	n:370000
Cons ci ratio: 9.336966e-03	ci left: 3.211613e-01	ci right 3.241767e-01	k: 119387	n:370000
KS ci ratio: 1.047643e+00	ci left: 1.870811e-05	ci right 6.008140e-05	k: 13	n:370000
NEB   370000 perm   206 sec   (1792 perm/sec)   p_kst 3.513514e-05   p_cons 3.226676e-01   p_joint 1.351351e-05

Joint ci ratio: 1.481605e+00	ci left: 5.794480e-06	ci right 3.436672e-05	k: 6	n:380000
Cons ci ratio: 9.216438e-03	ci left: 3.210322e-01	ci right 3.240073e-01	k: 122557	n:380000
KS ci ratio: 1.012118e+00	ci left: 2.014206e-05	ci right 6.181402e-05	k: 14	n:380000
NEB   380000 perm   214 sec   (1779 perm/sec)   p_kst 3.684211e-05   p_cons 3.225184e-01   p_joint 1.578947e-05

Joint ci ratio: 1.481606e+00	ci left: 5.645903e-06	ci right 3.348553e-05	k: 6	n:390000
Cons ci ratio: 9.097256e-03	ci left: 3.210638e-01	ci right 3.240004e-01	k: 125787	n:390000
KS ci ratio: 1.012119e+00	ci left: 1.962560e-05	ci right 6.022906e-05	k: 14	n:390000
NEB   390000 perm   221 sec   (1766 perm/sec)   p_kst 3.589744e-05   p_cons 3.225308e-01   p_joint 1.538462e-05

Joint ci ratio: 1.481606e+00	ci left: 5.504755e-06	ci right 3.264840e-05	k: 6	n:400000
Cons ci ratio: 8.979704e-03	ci left: 3.212338e-01	ci right 3.241338e-01	k: 129073	n:400000
KS ci ratio: 9.799792e-01	ci left: 2.098861e-05	ci right 6.184979e-05	k: 15	n:400000
NEB   400000 perm   228 sec   (1755 perm/sec)   p_kst 3.750000e-05   p_cons 3.226825e-01   p_joint 1.500000e-05

Joint ci ratio: 1.385914e+00	ci left: 6.864327e-06	ci right 3.517694e-05	k: 7	n:410000
Cons ci ratio: 8.871343e-03	ci left: 3.211618e-01	ci right 3.240260e-01	k: 132263	n:410000
KS ci ratio: 9.507188e-01	ci left: 2.230597e-05	ci right 6.337239e-05	k: 16	n:410000
NEB   410000 perm   235 sec   (1744 perm/sec)   p_kst 3.902439e-05   p_cons 3.225927e-01   p_joint 1.707317e-05

Joint ci ratio: 1.385914e+00	ci left: 6.700890e-06	ci right 3.433940e-05	k: 7	n:420000
Cons ci ratio: 8.765475e-03	ci left: 3.211601e-01	ci right 3.239900e-01	k: 135481	n:420000
KS ci ratio: 9.507193e-01	ci left: 2.177487e-05	ci right 6.186354e-05	k: 16	n:420000
NEB   420000 perm   242 sec   (1733 perm/sec)   p_kst 3.809524e-05   p_cons 3.225738e-01   p_joint 1.666667e-05

Joint ci ratio: 1.385915e+00	ci left: 6.545055e-06	ci right 3.354082e-05	k: 7	n:430000
Cons ci ratio: 8.662895e-03	ci left: 3.211796e-01	ci right 3.239763e-01	k: 138708	n:430000
KS ci ratio: 9.507198e-01	ci left: 2.126848e-05	ci right 6.042487e-05	k: 16	n:430000
NEB   430000 perm   250 sec   (1723 perm/sec)   p_kst 3.720930e-05   p_cons 3.225767e-01   p_joint 1.627907e-05

Joint ci ratio: 1.385915e+00	ci left: 6.396303e-06	ci right 3.277853e-05	k: 7	n:440000
Cons ci ratio: 8.564857e-03	ci left: 3.211461e-01	ci right 3.239108e-01	k: 141912	n:440000
KS ci ratio: 9.507202e-01	ci left: 2.078510e-05	ci right 5.905160e-05	k: 16	n:440000
NEB   440000 perm   257 sec   (1712 perm/sec)   p_kst 3.636364e-05   p_cons 3.225273e-01   p_joint 1.590909e-05

Joint ci ratio: 1.385915e+00	ci left: 6.254162e-06	ci right 3.205013e-05	k: 7	n:450000
Cons ci ratio: 8.469472e-03	ci left: 3.211454e-01	ci right 3.238791e-01	k: 145130	n:450000
KS ci ratio: 9.507206e-01	ci left: 2.032320e-05	ci right 5.773935e-05	k: 16	n:450000
NEB   450000 perm   265 sec   (1701 perm/sec)   p_kst 3.555556e-05   p_cons 3.225111e-01   p_joint 1.555556e-05

Joint ci ratio: 1.385916e+00	ci left: 6.118202e-06	ci right 3.135339e-05	k: 7	n:460000
Cons ci ratio: 8.374412e-03	ci left: 3.212904e-01	ci right 3.239945e-01	k: 148415	n:460000
KS ci ratio: 9.507210e-01	ci left: 1.988139e-05	ci right 5.648416e-05	k: 16	n:460000
NEB   460000 perm   272 sec   (1690 perm/sec)   p_kst 3.478261e-05   p_cons 3.226413e-01   p_joint 1.521739e-05

Joint ci ratio: 1.306653e+00	ci left: 7.348607e-06	ci right 3.353842e-05	k: 8	n:470000
Cons ci ratio: 8.286677e-03	ci left: 3.212083e-01	ci right 3.238832e-01	k: 151596	n:470000
KS ci ratio: 9.239342e-01	ci left: 2.107062e-05	ci right 5.791138e-05	k: 17	n:470000
NEB   470000 perm   280 sec   (1680 perm/sec)   p_kst 3.617021e-05   p_cons 3.225447e-01   p_joint 1.702128e-05

Joint ci ratio: 1.239599e+00	ci left: 8.573729e-06	ci right 3.559304e-05	k: 9	n:480000
Cons ci ratio: 8.200937e-03	ci left: 3.211673e-01	ci right 3.238140e-01	k: 154795	n:480000
KS ci ratio: 8.992909e-01	ci left: 2.222502e-05	ci right 5.926552e-05	k: 18	n:480000
NEB   480000 perm   287 sec   (1670 perm/sec)   p_kst 3.750000e-05   p_cons 3.224896e-01   p_joint 1.875000e-05

Joint ci ratio: 1.239599e+00	ci left: 8.398754e-06	ci right 3.486666e-05	k: 9	n:490000
Cons ci ratio: 8.115304e-03	ci left: 3.212626e-01	ci right 3.238824e-01	k: 158060	n:490000
KS ci ratio: 8.992913e-01	ci left: 2.177145e-05	ci right 5.805603e-05	k: 18	n:490000
NEB   490000 perm   295 sec   (1661 perm/sec)   p_kst 3.673469e-05   p_cons 3.225714e-01   p_joint 1.836735e-05

Joint ci ratio: 1.239599e+00	ci left: 8.230778e-06	ci right 3.416933e-05	k: 9	n:500000
Cons ci ratio: 8.033584e-03	ci left: 3.212843e-01	ci right 3.238777e-01	k: 161290	n:500000
KS ci ratio: 8.765202e-01	ci left: 2.287863e-05	ci right 5.934107e-05	k: 19	n:500000
NEB   500000 perm   303 sec   (1652 perm/sec)   p_kst 3.800000e-05   p_cons 3.225800e-01   p_joint 1.800000e-05

Joint ci ratio: 1.239599e+00	ci left: 8.069390e-06	ci right 3.349935e-05	k: 9	n:510000
Cons ci ratio: 7.956105e-03	ci left: 3.212054e-01	ci right 3.237731e-01	k: 164469	n:510000
KS ci ratio: 8.765206e-01	ci left: 2.243003e-05	ci right 5.817754e-05	k: 19	n:510000
NEB   510000 perm   311 sec   (1642 perm/sec)   p_kst 3.725490e-05   p_cons 3.224882e-01   p_joint 1.764706e-05

Joint ci ratio: 1.239600e+00	ci left: 7.914209e-06	ci right 3.285514e-05	k: 9	n:520000
Cons ci ratio: 7.880790e-03	ci left: 3.211316e-01	ci right 3.236742e-01	k: 167649	n:520000
KS ci ratio: 8.765209e-01	ci left: 2.199868e-05	ci right 5.705875e-05	k: 19	n:520000
NEB   520000 perm   318 sec   (1633 perm/sec)   p_kst 3.653846e-05   p_cons 3.224019e-01   p_joint 1.730769e-05

Joint ci ratio: 1.239600e+00	ci left: 7.764883e-06	ci right 3.223523e-05	k: 9	n:530000
Cons ci ratio: 7.806629e-03	ci left: 3.211134e-01	ci right 3.236319e-01	k: 170857	n:530000
KS ci ratio: 8.357287e-01	ci left: 2.452720e-05	ci right 6.056678e-05	k: 21	n:530000
NEB   530000 perm   327 sec   (1622 perm/sec)   p_kst 3.962264e-05   p_cons 3.223717e-01   p_joint 1.698113e-05

Joint ci ratio: 1.239600e+00	ci left: 7.621089e-06	ci right 3.163829e-05	k: 9	n:540000
Cons ci ratio: 7.734622e-03	ci left: 3.210905e-01	ci right 3.235855e-01	k: 174062	n:540000
KS ci ratio: 8.357290e-01	ci left: 2.407299e-05	ci right 5.944519e-05	k: 21	n:540000
NEB   540000 perm   335 sec   (1613 perm/sec)   p_kst 3.888889e-05   p_cons 3.223370e-01   p_joint 1.666667e-05

Joint ci ratio: 1.239600e+00	ci left: 7.482523e-06	ci right 3.106305e-05	k: 9	n:550000
Cons ci ratio: 7.662339e-03	ci left: 3.211957e-01	ci right 3.236680e-01	k: 177337	n:550000
KS ci ratio: 8.357293e-01	ci left: 2.363530e-05	ci right 5.836438e-05	k: 21	n:550000
NEB   550000 perm   343 sec   (1604 perm/sec)   p_kst 3.818182e-05   p_cons 3.224309e-01   p_joint 1.636364e-05

Joint ci ratio: 1.239601e+00	ci left: 7.348906e-06	ci right 3.050836e-05	k: 9	n:560000
Cons ci ratio: 7.595924e-03	ci left: 3.210742e-01	ci right 3.235241e-01	k: 180487	n:560000
KS ci ratio: 8.357296e-01	ci left: 2.321324e-05	ci right 5.732217e-05	k: 21	n:560000
NEB   560000 perm   351 sec   (1595 perm/sec)   p_kst 3.750000e-05   p_cons 3.222982e-01   p_joint 1.607143e-05

Joint ci ratio: 1.181912e+00	ci left: 8.412994e-06	ci right 3.226355e-05	k: 10	n:570000
Cons ci ratio: 7.529059e-03	ci left: 3.210815e-01	ci right 3.235098e-01	k: 183708	n:570000
KS ci ratio: 8.173593e-01	ci left: 2.418837e-05	ci right 5.843497e-05	k: 22	n:570000
NEB   570000 perm   359 sec   (1586 perm/sec)   p_kst 3.859649e-05   p_cons 3.222947e-01   p_joint 1.754386e-05

Joint ci ratio: 1.181912e+00	ci left: 8.267942e-06	ci right 3.170728e-05	k: 10	n:580000
Cons ci ratio: 7.465078e-03	ci left: 3.210215e-01	ci right 3.234286e-01	k: 186890	n:580000
KS ci ratio: 8.173596e-01	ci left: 2.377133e-05	ci right 5.742748e-05	k: 22	n:580000
NEB   580000 perm   368 sec   (1577 perm/sec)   p_kst 3.793103e-05   p_cons 3.222241e-01   p_joint 1.724138e-05

Joint ci ratio: 1.181912e+00	ci left: 8.127806e-06	ci right 3.116987e-05	k: 10	n:590000
Cons ci ratio: 7.399570e-03	ci left: 3.211481e-01	ci right 3.235350e-01	k: 190181	n:590000
KS ci ratio: 8.173599e-01	ci left: 2.336842e-05	ci right 5.645414e-05	k: 22	n:590000
NEB   590000 perm   376 sec   (1569 perm/sec)   p_kst 3.728814e-05   p_cons 3.223407e-01   p_joint 1.694915e-05

Joint ci ratio: 1.181913e+00	ci left: 7.992342e-06	ci right 3.065038e-05	k: 10	n:600000
Cons ci ratio: 7.338500e-03	ci left: 3.211075e-01	ci right 3.234742e-01	k: 193374	n:600000
KS ci ratio: 7.839830e-01	ci left: 2.562892e-05	ci right 5.951625e-05	k: 24	n:600000
NEB   600000 perm   385 sec   (1560 perm/sec)   p_kst 4.000000e-05   p_cons 3.222900e-01   p_joint 1.666667e-05

Joint ci ratio: 1.181913e+00	ci left: 7.861320e-06	ci right 3.014792e-05	k: 10	n:610000
Cons ci ratio: 7.279054e-03	ci left: 3.210601e-01	ci right 3.234072e-01	k: 196562	n:610000
KS ci ratio: 7.839833e-01	ci left: 2.520877e-05	ci right 5.854058e-05	k: 24	n:610000
NEB   610000 perm   393 sec   (1552 perm/sec)   p_kst 3.934426e-05   p_cons 3.222328e-01   p_joint 1.639344e-05

Joint ci ratio: 1.131595e+00	ci left: 8.856742e-06	ci right 3.174500e-05	k: 11	n:620000
Cons ci ratio: 7.219935e-03	ci left: 3.210803e-01	ci right 3.234085e-01	k: 199791	n:620000
KS ci ratio: 7.687585e-01	ci left: 2.609481e-05	ci right 5.952351e-05	k: 25	n:620000
NEB   620000 perm   402 sec   (1543 perm/sec)   p_kst 4.032258e-05   p_cons 3.222435e-01   p_joint 1.774194e-05

Joint ci ratio: 1.131595e+00	ci left: 8.716159e-06	ci right 3.124112e-05	k: 11	n:630000
Cons ci ratio: 7.161636e-03	ci left: 3.211365e-01	ci right 3.234461e-01	k: 203043	n:630000
KS ci ratio: 7.687588e-01	ci left: 2.568061e-05	ci right 5.857870e-05	k: 25	n:630000
NEB   630000 perm   410 sec   (1535 perm/sec)   p_kst 3.968254e-05   p_cons 3.222905e-01   p_joint 1.746032e-05

Joint ci ratio: 1.131595e+00	ci left: 8.579968e-06	ci right 3.075298e-05	k: 11	n:640000
Cons ci ratio: 7.106658e-03	ci left: 3.210723e-01	ci right 3.233637e-01	k: 206219	n:640000
KS ci ratio: 7.687590e-01	ci left: 2.527934e-05	ci right 5.766342e-05	k: 25	n:640000
NEB   640000 perm   419 sec   (1527 perm/sec)   p_kst 3.906250e-05   p_cons 3.222172e-01   p_joint 1.718750e-05

Joint ci ratio: 1.131595e+00	ci left: 8.447968e-06	ci right 3.027986e-05	k: 11	n:650000
Cons ci ratio: 7.052306e-03	ci left: 3.210486e-01	ci right 3.233222e-01	k: 209420	n:650000
KS ci ratio: 7.687593e-01	ci left: 2.489043e-05	ci right 5.677630e-05	k: 25	n:650000
NEB   650000 perm   428 sec   (1518 perm/sec)   p_kst 3.846154e-05   p_cons 3.221846e-01   p_joint 1.692308e-05

Joint ci ratio: 1.131595e+00	ci left: 8.319968e-06	ci right 2.982107e-05	k: 11	n:660000
Cons ci ratio: 6.998551e-03	ci left: 3.210650e-01	ci right 3.233214e-01	k: 212647	n:660000
KS ci ratio: 7.687595e-01	ci left: 2.451330e-05	ci right 5.591606e-05	k: 25	n:660000
NEB   660000 perm   437 sec   (1510 perm/sec)   p_kst 3.787879e-05   p_cons 3.221924e-01   p_joint 1.666667e-05

Joint ci ratio: 1.131596e+00	ci left: 8.195789e-06	ci right 2.937599e-05	k: 11	n:670000
Cons ci ratio: 6.947193e-03	ci left: 3.210065e-01	ci right 3.232458e-01	k: 215824	n:670000
KS ci ratio: 7.687598e-01	ci left: 2.414743e-05	ci right 5.508150e-05	k: 25	n:670000
NEB   670000 perm   446 sec   (1502 perm/sec)   p_kst 3.731343e-05   p_cons 3.221254e-01   p_joint 1.641791e-05

Joint ci ratio: 1.131596e+00	ci left: 8.075263e-06	ci right 2.894399e-05	k: 11	n:680000
Cons ci ratio: 6.894837e-03	ci left: 3.210834e-01	ci right 3.233063e-01	k: 219092	n:680000
KS ci ratio: 7.687600e-01	ci left: 2.379232e-05	ci right 5.427148e-05	k: 25	n:680000
NEB   680000 perm   455 sec   (1495 perm/sec)   p_kst 3.676471e-05   p_cons 3.221941e-01   p_joint 1.617647e-05

Joint ci ratio: 1.131596e+00	ci left: 7.958229e-06	ci right 2.852451e-05	k: 11	n:690000
Cons ci ratio: 6.844169e-03	ci left: 3.211249e-01	ci right 3.233317e-01	k: 222337	n:690000
KS ci ratio: 7.687602e-01	ci left: 2.344750e-05	ci right 5.348495e-05	k: 25	n:690000
NEB   690000 perm   464 sec   (1487 perm/sec)   p_kst 3.623188e-05   p_cons 3.222275e-01   p_joint 1.594203e-05

Joint ci ratio: 1.087202e+00	ci left: 8.857995e-06	ci right 2.994493e-05	k: 12	n:700000
Cons ci ratio: 6.795001e-03	ci left: 3.211395e-01	ci right 3.233305e-01	k: 225564	n:700000
KS ci ratio: 7.543893e-01	ci left: 2.426309e-05	ci right 5.442242e-05	k: 26	n:700000
NEB   700000 perm   473 sec   (1478 perm/sec)   p_kst 3.714286e-05   p_cons 3.222343e-01   p_joint 1.714286e-05

Joint ci ratio: 1.047653e+00	ci left: 9.749264e-06	ci right 3.131021e-05	k: 13	n:710000
Cons ci ratio: 6.749947e-03	ci left: 3.209554e-01	ci right 3.231305e-01	k: 228650	n:710000
KS ci ratio: 7.407952e-01	ci left: 2.506095e-05	ci right 5.532851e-05	k: 27	n:710000
NEB   710000 perm   483 sec   (1469 perm/sec)   p_kst 3.802817e-05   p_cons 3.220423e-01   p_joint 1.830986e-05

Joint ci ratio: 7.279106e-01	ci left: 2.584153e-05	ci right 5.620479e-05	k: 28	n:720000
Cons ci ratio: 6.703174e-03	ci left: 3.209457e-01	ci right 3.231057e-01	k: 231858	n:720000
KS ci ratio: 7.279106e-01	ci left: 2.584153e-05	ci right 5.620479e-05	k: 28	n:720000
NEB   720000 perm   493 sec   (1462 perm/sec)   p_kst 3.888889e-05   p_cons 3.220250e-01   p_joint 3.888889e-05

Joint ci ratio: 7.279108e-01	ci left: 2.548754e-05	ci right 5.543486e-05	k: 28	n:730000
Cons ci ratio: 6.655626e-03	ci left: 3.210500e-01	ci right 3.231953e-01	k: 235149	n:730000
KS ci ratio: 7.279108e-01	ci left: 2.548754e-05	ci right 5.543486e-05	k: 28	n:730000
NEB   730000 perm   502 sec   (1454 perm/sec)   p_kst 3.835616e-05   p_cons 3.221219e-01   p_joint 3.835616e-05

Joint ci ratio: 7.040376e-01	ci left: 2.735269e-05	ci right 5.787364e-05	k: 30	n:740000
Cons ci ratio: 6.610467e-03	ci left: 3.210597e-01	ci right 3.231904e-01	k: 238372	n:740000
KS ci ratio: 7.040376e-01	ci left: 2.735269e-05	ci right 5.787364e-05	k: 30	n:740000
NEB   740000 perm   511 sec   (1447 perm/sec)   p_kst 4.054054e-05   p_cons 3.221243e-01   p_joint 4.054054e-05

Joint ci ratio: 6.929494e-01	ci left: 2.808416e-05	ci right 5.866886e-05	k: 31	n:750000
Cons ci ratio: 6.566835e-03	ci left: 3.210278e-01	ci right 3.231442e-01	k: 241564	n:750000
KS ci ratio: 6.929494e-01	ci left: 2.808416e-05	ci right 5.866886e-05	k: 31	n:750000
NEB   750000 perm   521 sec   (1440 perm/sec)   p_kst 4.133333e-05   p_cons 3.220853e-01   p_joint 4.133333e-05

Joint ci ratio: 6.929496e-01	ci left: 2.771463e-05	ci right 5.789691e-05	k: 31	n:760000
Cons ci ratio: 6.522661e-03	ci left: 3.210902e-01	ci right 3.231927e-01	k: 244827	n:760000
KS ci ratio: 6.929496e-01	ci left: 2.771463e-05	ci right 5.789691e-05	k: 31	n:760000
NEB   760000 perm   530 sec   (1433 perm/sec)   p_kst 4.078947e-05   p_cons 3.221408e-01   p_joint 4.078947e-05

Joint ci ratio: 6.929498e-01	ci left: 2.735470e-05	ci right 5.714501e-05	k: 31	n:770000
Cons ci ratio: 6.480774e-03	ci left: 3.210563e-01	ci right 3.231450e-01	k: 248017	n:770000
KS ci ratio: 6.929498e-01	ci left: 2.735470e-05	ci right 5.714501e-05	k: 31	n:770000
NEB   770000 perm   540 sec   (1425 perm/sec)   p_kst 4.025974e-05   p_cons 3.221000e-01   p_joint 4.025974e-05

Joint ci ratio: 6.929500e-01	ci left: 2.700400e-05	ci right 5.641238e-05	k: 31	n:780000
Cons ci ratio: 6.440269e-03	ci left: 3.209836e-01	ci right 3.230587e-01	k: 251176	n:780000
KS ci ratio: 6.929500e-01	ci left: 2.700400e-05	ci right 5.641238e-05	k: 31	n:780000
NEB   780000 perm   550 sec   (1418 perm/sec)   p_kst 3.974359e-05   p_cons 3.220205e-01   p_joint 3.974359e-05

Joint ci ratio: 6.625858e-01	ci left: 2.980523e-05	ci right 6.014074e-05	k: 34	n:790000
Cons ci ratio: 6.399679e-03	ci left: 3.209697e-01	ci right 3.230316e-01	k: 254380	n:790000
KS ci ratio: 6.625858e-01	ci left: 2.980523e-05	ci right 6.014074e-05	k: 34	n:790000
NEB   790000 perm   560 sec   (1411 perm/sec)   p_kst 4.303797e-05   p_cons 3.220000e-01   p_joint 4.303797e-05

Joint ci ratio: 6.625860e-01	ci left: 2.943266e-05	ci right 5.938899e-05	k: 34	n:800000
Cons ci ratio: 6.359227e-03	ci left: 3.209986e-01	ci right 3.230477e-01	k: 257618	n:800000
KS ci ratio: 6.625860e-01	ci left: 2.943266e-05	ci right 5.938899e-05	k: 34	n:800000
NEB   800000 perm   570 sec   (1404 perm/sec)   p_kst 4.250000e-05   p_cons 3.220225e-01   p_joint 4.250000e-05

Joint ci ratio: 6.533184e-01	ci left: 3.009744e-05	ci right 6.009397e-05	k: 35	n:810000
Cons ci ratio: 6.319337e-03	ci left: 3.210405e-01	ci right 3.230769e-01	k: 260867	n:810000
KS ci ratio: 6.533184e-01	ci left: 3.009744e-05	ci right 6.009397e-05	k: 35	n:810000
NEB   810000 perm   580 sec   (1398 perm/sec)   p_kst 4.320988e-05   p_cons 3.220580e-01   p_joint 4.320988e-05

Joint ci ratio: 6.444291e-01	ci left: 3.074891e-05	ci right 6.077897e-05	k: 36	n:820000
Cons ci ratio: 6.280591e-03	ci left: 3.210533e-01	ci right 3.230772e-01	k: 264093	n:820000
KS ci ratio: 6.444291e-01	ci left: 3.074891e-05	ci right 6.077897e-05	k: 36	n:820000
NEB   820000 perm   590 sec   (1390 perm/sec)   p_kst 4.390244e-05   p_cons 3.220646e-01   p_joint 4.390244e-05

Joint ci ratio: 6.276872e-01	ci left: 3.239907e-05	ci right 6.284039e-05	k: 38	n:830000
Cons ci ratio: 6.243411e-03	ci left: 3.210057e-01	ci right 3.230173e-01	k: 267269	n:830000
KS ci ratio: 6.276872e-01	ci left: 3.239907e-05	ci right 6.284039e-05	k: 38	n:830000
NEB   830000 perm   600 sec   (1384 perm/sec)   p_kst 4.578313e-05   p_cons 3.220108e-01   p_joint 4.578313e-05

Joint ci ratio: 6.276874e-01	ci left: 3.201336e-05	ci right 6.209230e-05	k: 38	n:840000
Cons ci ratio: 6.206579e-03	ci left: 3.209806e-01	ci right 3.229802e-01	k: 270463	n:840000
KS ci ratio: 6.276874e-01	ci left: 3.201336e-05	ci right 6.209230e-05	k: 38	n:840000
NEB   840000 perm   610 sec   (1377 perm/sec)   p_kst 4.523810e-05   p_cons 3.219798e-01   p_joint 4.523810e-05

Joint ci ratio: 6.276876e-01	ci left: 3.163673e-05	ci right 6.136181e-05	k: 38	n:850000
Cons ci ratio: 6.170357e-03	ci left: 3.209585e-01	ci right 3.229462e-01	k: 273659	n:850000
KS ci ratio: 6.276876e-01	ci left: 3.163673e-05	ci right 6.136181e-05	k: 38	n:850000
NEB   850000 perm   620 sec   (1371 perm/sec)   p_kst 4.470588e-05   p_cons 3.219518e-01   p_joint 4.470588e-05

Joint ci ratio: 6.276878e-01	ci left: 3.126886e-05	ci right 6.064830e-05	k: 38	n:860000
Cons ci ratio: 6.133521e-03	ci left: 3.210253e-01	ci right 3.230015e-01	k: 276931	n:860000
KS ci ratio: 6.276878e-01	ci left: 3.126886e-05	ci right 6.064830e-05	k: 38	n:860000
NEB   860000 perm   630 sec   (1364 perm/sec)   p_kst 4.418605e-05   p_cons 3.220128e-01   p_joint 4.418605e-05

Joint ci ratio: 6.276879e-01	ci left: 3.090945e-05	ci right 5.995120e-05	k: 38	n:870000
Cons ci ratio: 6.098781e-03	ci left: 3.209872e-01	ci right 3.229519e-01	k: 280113	n:870000
KS ci ratio: 6.276879e-01	ci left: 3.090945e-05	ci right 5.995120e-05	k: 38	n:870000
NEB   870000 perm   641 sec   (1358 perm/sec)   p_kst 4.367816e-05   p_cons 3.219690e-01   p_joint 4.367816e-05

Joint ci ratio: 6.121865e-01	ci left: 3.247359e-05	ci right 6.189568e-05	k: 40	n:880000
Cons ci ratio: 6.064546e-03	ci left: 3.209557e-01	ci right 3.229091e-01	k: 283300	n:880000
KS ci ratio: 6.121865e-01	ci left: 3.247359e-05	ci right 6.189568e-05	k: 40	n:880000
NEB   880000 perm   651 sec   (1351 perm/sec)   p_kst 4.545455e-05   p_cons 3.219318e-01   p_joint 4.545455e-05

Joint ci ratio: 6.121867e-01	ci left: 3.210871e-05	ci right 6.120023e-05	k: 40	n:890000
Cons ci ratio: 6.029174e-03	ci left: 3.210484e-01	ci right 3.229910e-01	k: 286597	n:890000
KS ci ratio: 6.121867e-01	ci left: 3.210871e-05	ci right 6.120023e-05	k: 40	n:890000
NEB   890000 perm   662 sec   (1345 perm/sec)   p_kst 4.494382e-05   p_cons 3.220191e-01   p_joint 4.494382e-05

Joint ci ratio: 6.121869e-01	ci left: 3.175195e-05	ci right 6.052023e-05	k: 40	n:900000
Cons ci ratio: 6.194268e-03	ci left: 3.069985e-01	ci right 3.089071e-01	k: 277157	n:900000
KS ci ratio: 6.121869e-01	ci left: 3.175195e-05	ci right 6.052023e-05	k: 40	n:900000
NEB   900000 perm   672 sec   (1338 perm/sec)   p_kst 4.444444e-05   p_cons 3.079522e-01   p_joint 4.444444e-05

Joint ci ratio: 6.121870e-01	ci left: 3.140302e-05	ci right 5.985518e-05	k: 40	n:910000
Cons ci ratio: 6.160673e-03	ci left: 3.069670e-01	ci right 3.088650e-01	k: 280203	n:910000
KS ci ratio: 6.121870e-01	ci left: 3.140302e-05	ci right 5.985518e-05	k: 40	n:910000
NEB   910000 perm   683 sec   (1332 perm/sec)   p_kst 4.395604e-05   p_cons 3.079154e-01   p_joint 4.395604e-05

Joint ci ratio: 6.048550e-01	ci left: 3.198095e-05	ci right 6.045727e-05	k: 41	n:920000
Cons ci ratio: 6.126727e-03	ci left: 3.069980e-01	ci right 3.088858e-01	k: 283306	n:920000
KS ci ratio: 6.048550e-01	ci left: 3.198095e-05	ci right 6.045727e-05	k: 41	n:920000
NEB   920000 perm   694 sec   (1326 perm/sec)   p_kst 4.456522e-05   p_cons 3.079413e-01   p_joint 4.456522e-05

Joint ci ratio: 6.048551e-01	ci left: 3.163707e-05	ci right 5.980720e-05	k: 41	n:930000
Cons ci ratio: 6.094581e-03	ci left: 3.069414e-01	ci right 3.088189e-01	k: 286328	n:930000
KS ci ratio: 6.048551e-01	ci left: 3.163707e-05	ci right 5.980720e-05	k: 41	n:930000
NEB   930000 perm   705 sec   (1319 perm/sec)   p_kst 4.408602e-05   p_cons 3.078796e-01   p_joint 4.408602e-05

Joint ci ratio: 6.048553e-01	ci left: 3.130050e-05	ci right 5.917095e-05	k: 41	n:940000
Cons ci ratio: 6.063617e-03	ci left: 3.068382e-01	ci right 3.087055e-01	k: 289305	n:940000
KS ci ratio: 6.048553e-01	ci left: 3.130050e-05	ci right 5.917095e-05	k: 41	n:940000
NEB   940000 perm   716 sec   (1313 perm/sec)   p_kst 4.361702e-05   p_cons 3.077713e-01   p_joint 4.361702e-05

Joint ci ratio: 6.048554e-01	ci left: 3.097102e-05	ci right 5.854811e-05	k: 41	n:950000
Cons ci ratio: 6.031794e-03	ci left: 3.068309e-01	ci right 3.086882e-01	k: 292371	n:950000
KS ci ratio: 6.048554e-01	ci left: 3.097102e-05	ci right 5.854811e-05	k: 41	n:950000
NEB   950000 perm   727 sec   (1307 perm/sec)   p_kst 4.315789e-05   p_cons 3.077589e-01   p_joint 4.315789e-05

Joint ci ratio: 5.977807e-01	ci left: 3.153133e-05	ci right 5.913684e-05	k: 42	n:960000
Cons ci ratio: 6.000554e-03	ci left: 3.068174e-01	ci right 3.086650e-01	k: 295431	n:960000
KS ci ratio: 5.977807e-01	ci left: 3.153133e-05	ci right 5.913684e-05	k: 42	n:960000
NEB   960000 perm   738 sec   (1300 perm/sec)   p_kst 4.375000e-05   p_cons 3.077406e-01   p_joint 4.375000e-05

Joint ci ratio: 5.977808e-01	ci left: 3.120626e-05	ci right 5.852718e-05	k: 42	n:970000
Cons ci ratio: 5.971066e-03	ci left: 3.067136e-01	ci right 3.085515e-01	k: 298403	n:970000
KS ci ratio: 5.977808e-01	ci left: 3.120626e-05	ci right 5.852718e-05	k: 42	n:970000
NEB   970000 perm   750 sec   (1294 perm/sec)   p_kst 4.329897e-05   p_cons 3.076320e-01   p_joint 4.329897e-05

Joint ci ratio: 5.909487e-01	ci left: 3.175458e-05	ci right 5.910232e-05	k: 43	n:980000
Cons ci ratio: 5.940557e-03	ci left: 3.067159e-01	ci right 3.085444e-01	k: 301477	n:980000
KS ci ratio: 5.909487e-01	ci left: 3.175458e-05	ci right 5.910232e-05	k: 43	n:980000
NEB   980000 perm   761 sec   (1288 perm/sec)   p_kst 4.387755e-05   p_cons 3.076296e-01   p_joint 4.387755e-05

Joint ci ratio: 5.843455e-01	ci left: 3.229358e-05	ci right 5.966414e-05	k: 44	n:990000
Cons ci ratio: 5.910566e-03	ci left: 3.067142e-01	ci right 3.085334e-01	k: 304547	n:990000
KS ci ratio: 5.843455e-01	ci left: 3.229358e-05	ci right 5.966414e-05	k: 44	n:990000
NEB   990000 perm   772 sec   (1282 perm/sec)   p_kst 4.444444e-05   p_cons 3.076232e-01   p_joint 4.444444e-05

Joint ci ratio: 5.779589e-01	ci left: 3.282349e-05	ci right 6.021308e-05	k: 45	n:1000000
Cons ci ratio: 5.880929e-03	ci left: 3.067195e-01	ci right 3.085296e-01	k: 307624	n:1000000
KS ci ratio: 5.779589e-01	ci left: 3.282349e-05	ci right 6.021308e-05	k: 45	n:1000000
NEB   1000000 perm   784 sec   (1276 perm/sec)   p_kst 4.500000e-05   p_cons 3.076240e-01   p_joint 4.500000e-05

Joint ci ratio: 5.779590e-01	ci left: 3.249851e-05	ci right 5.961692e-05	k: 45	n:1010000
Cons ci ratio: 5.851692e-03	ci left: 3.067277e-01	ci right 3.085288e-01	k: 310704	n:1010000
KS ci ratio: 5.779590e-01	ci left: 3.249851e-05	ci right 5.961692e-05	k: 45	n:1010000
NEB   1010000 perm   795 sec   (1270 perm/sec)   p_kst 4.455446e-05   p_cons 3.076277e-01   p_joint 4.455446e-05

Joint ci ratio: 5.779592e-01	ci left: 3.217989e-05	ci right 5.903244e-05	k: 45	n:1020000
Cons ci ratio: 5.822954e-03	ci left: 3.067309e-01	ci right 3.085231e-01	k: 313779	n:1020000
KS ci ratio: 5.779592e-01	ci left: 3.217989e-05	ci right 5.903244e-05	k: 45	n:1020000
NEB   1020000 perm   807 sec   (1264 perm/sec)   p_kst 4.411765e-05   p_cons 3.076265e-01   p_joint 4.411765e-05

Joint ci ratio: 5.779593e-01	ci left: 3.186746e-05	ci right 5.845932e-05	k: 45	n:1030000
Cons ci ratio: 5.795242e-03	ci left: 3.066894e-01	ci right 3.084728e-01	k: 316808	n:1030000
KS ci ratio: 5.779593e-01	ci left: 3.186746e-05	ci right 5.845932e-05	k: 45	n:1030000
NEB   1030000 perm   818 sec   (1258 perm/sec)   p_kst 4.368932e-05   p_cons 3.075806e-01   p_joint 4.368932e-05

Joint ci ratio: 5.779594e-01	ci left: 3.156104e-05	ci right 5.789721e-05	k: 45	n:1040000
Cons ci ratio: 5.768001e-03	ci left: 3.066430e-01	ci right 3.084177e-01	k: 319831	n:1040000
KS ci ratio: 5.779594e-01	ci left: 3.156104e-05	ci right 5.789721e-05	k: 45	n:1040000
NEB   1040000 perm   830 sec   (1253 perm/sec)   p_kst 4.326923e-05   p_cons 3.075298e-01   p_joint 4.326923e-05

Joint ci ratio: 5.779595e-01	ci left: 3.126046e-05	ci right 5.734581e-05	k: 45	n:1050000
Cons ci ratio: 5.740986e-03	ci left: 3.066088e-01	ci right 3.083751e-01	k: 322866	n:1050000
KS ci ratio: 5.779595e-01	ci left: 3.126046e-05	ci right 5.734581e-05	k: 45	n:1050000
NEB   1050000 perm   842 sec   (1248 perm/sec)   p_kst 4.285714e-05   p_cons 3.074914e-01   p_joint 4.285714e-05

Joint ci ratio: 5.779597e-01	ci left: 3.096555e-05	ci right 5.680482e-05	k: 45	n:1060000
Cons ci ratio: 5.713613e-03	ci left: 3.066301e-01	ci right 3.083880e-01	k: 325959	n:1060000
KS ci ratio: 5.779597e-01	ci left: 3.096555e-05	ci right 5.680482e-05	k: 45	n:1060000
NEB   1060000 perm   853 sec   (1242 perm/sec)   p_kst 4.245283e-05   p_cons 3.075085e-01   p_joint 4.245283e-05

Joint ci ratio: 5.779598e-01	ci left: 3.067615e-05	ci right 5.627394e-05	k: 45	n:1070000
Cons ci ratio: 5.686478e-03	ci left: 3.066621e-01	ci right 3.084118e-01	k: 329064	n:1070000
KS ci ratio: 5.779598e-01	ci left: 3.067615e-05	ci right 5.627394e-05	k: 45	n:1070000
NEB   1070000 perm   865 sec   (1237 perm/sec)   p_kst 4.205607e-05   p_cons 3.075364e-01   p_joint 4.205607e-05

Joint ci ratio: 5.779599e-01	ci left: 3.039211e-05	ci right 5.575289e-05	k: 45	n:1080000
Cons ci ratio: 5.660427e-03	ci left: 3.066409e-01	ci right 3.083824e-01	k: 332112	n:1080000
KS ci ratio: 5.779599e-01	ci left: 3.039211e-05	ci right 5.575289e-05	k: 45	n:1080000
NEB   1080000 perm   877 sec   (1231 perm/sec)   p_kst 4.166667e-05   p_cons 3.075111e-01   p_joint 4.166667e-05

Joint ci ratio: 5.717782e-01	ci left: 3.089721e-05	ci right 5.629094e-05	k: 46	n:1090000
Cons ci ratio: 5.633943e-03	ci left: 3.066796e-01	ci right 3.084132e-01	k: 335225	n:1090000
KS ci ratio: 5.717782e-01	ci left: 3.089721e-05	ci right 5.629094e-05	k: 46	n:1090000
NEB   1090000 perm   889 sec   (1226 perm/sec)   p_kst 4.220183e-05   p_cons 3.075459e-01   p_joint 4.220183e-05

Joint ci ratio: 5.717783e-01	ci left: 3.061632e-05	ci right 5.577920e-05	k: 46	n:1100000
Cons ci ratio: 5.608808e-03	ci left: 3.066432e-01	ci right 3.083688e-01	k: 338256	n:1100000
KS ci ratio: 5.717783e-01	ci left: 3.061632e-05	ci right 5.577920e-05	k: 46	n:1100000
NEB   1100000 perm   901 sec   (1220 perm/sec)   p_kst 4.181818e-05   p_cons 3.075055e-01   p_joint 4.181818e-05

Joint ci ratio: 5.717784e-01	ci left: 3.034050e-05	ci right 5.527669e-05	k: 46	n:1110000
Cons ci ratio: 5.582719e-03	ci left: 3.067055e-01	ci right 3.084234e-01	k: 341396	n:1110000
KS ci ratio: 5.717784e-01	ci left: 3.034050e-05	ci right 5.527669e-05	k: 46	n:1110000
NEB   1110000 perm   914 sec   (1215 perm/sec)   p_kst 4.144144e-05   p_cons 3.075640e-01   p_joint 4.144144e-05

Joint ci ratio: 5.717785e-01	ci left: 3.006960e-05	ci right 5.478315e-05	k: 46	n:1120000
Cons ci ratio: 5.558517e-03	ci left: 3.066499e-01	ci right 3.083600e-01	k: 344405	n:1120000
KS ci ratio: 5.717785e-01	ci left: 3.006960e-05	ci right 5.478315e-05	k: 46	n:1120000
NEB   1120000 perm   926 sec   (1209 perm/sec)   p_kst 4.107143e-05   p_cons 3.075045e-01   p_joint 4.107143e-05

Joint ci ratio: 5.717786e-01	ci left: 2.980350e-05	ci right 5.429835e-05	k: 46	n:1130000
Cons ci ratio: 5.533396e-03	ci left: 3.066899e-01	ci right 3.083925e-01	k: 347521	n:1130000
KS ci ratio: 5.717786e-01	ci left: 2.980350e-05	ci right 5.429835e-05	k: 46	n:1130000
NEB   1130000 perm   938 sec   (1205 perm/sec)   p_kst 4.070796e-05   p_cons 3.075407e-01   p_joint 4.070796e-05

Joint ci ratio: 5.657911e-01	ci left: 3.029299e-05	ci right 5.482422e-05	k: 47	n:1140000
Cons ci ratio: 5.507932e-03	ci left: 3.067818e-01	ci right 3.084771e-01	k: 350697	n:1140000
KS ci ratio: 5.657911e-01	ci left: 3.029299e-05	ci right 5.482422e-05	k: 47	n:1140000
NEB   1140000 perm   950 sec   (1200 perm/sec)   p_kst 4.122807e-05   p_cons 3.076289e-01   p_joint 4.122807e-05

Joint ci ratio: 5.599878e-01	ci left: 3.077530e-05	ci right 5.533966e-05	k: 48	n:1150000
Cons ci ratio: 5.483745e-03	ci left: 3.068000e-01	ci right 3.084879e-01	k: 353790	n:1150000
KS ci ratio: 5.599878e-01	ci left: 3.077530e-05	ci right 5.533966e-05	k: 48	n:1150000
NEB   1150000 perm   963 sec   (1195 perm/sec)   p_kst 4.173913e-05   p_cons 3.076435e-01   p_joint 4.173913e-05

Joint ci ratio: 5.599879e-01	ci left: 3.050999e-05	ci right 5.486259e-05	k: 48	n:1160000
Cons ci ratio: 5.460626e-03	ci left: 3.067594e-01	ci right 3.084399e-01	k: 356815	n:1160000
KS ci ratio: 5.599879e-01	ci left: 3.050999e-05	ci right 5.486259e-05	k: 48	n:1160000
NEB   1160000 perm   975 sec   (1190 perm/sec)   p_kst 4.137931e-05   p_cons 3.075991e-01   p_joint 4.137931e-05

Joint ci ratio: 5.488976e-01	ci left: 3.171893e-05	ci right 5.634044e-05	k: 50	n:1170000
Cons ci ratio: 5.437709e-03	ci left: 3.067262e-01	ci right 3.083995e-01	k: 359848	n:1170000
KS ci ratio: 5.488976e-01	ci left: 3.171893e-05	ci right 5.634044e-05	k: 50	n:1170000
NEB   1170000 perm   988 sec   (1185 perm/sec)   p_kst 4.273504e-05   p_cons 3.075624e-01   p_joint 4.273504e-05

Joint ci ratio: 5.488977e-01	ci left: 3.145013e-05	ci right 5.586298e-05	k: 50	n:1180000
Cons ci ratio: 5.415035e-03	ci left: 3.066971e-01	ci right 3.083632e-01	k: 362885	n:1180000
KS ci ratio: 5.488977e-01	ci left: 3.145013e-05	ci right 5.586298e-05	k: 50	n:1180000
NEB   1180000 perm   1000 sec   (1180 perm/sec)   p_kst 4.237288e-05   p_cons 3.075297e-01   p_joint 4.237288e-05

Joint ci ratio: 5.488978e-01	ci left: 3.118584e-05	ci right 5.539355e-05	k: 50	n:1190000
Cons ci ratio: 5.392451e-03	ci left: 3.066835e-01	ci right 3.083426e-01	k: 365940	n:1190000
KS ci ratio: 5.488978e-01	ci left: 3.118584e-05	ci right 5.539355e-05	k: 50	n:1190000
NEB   1190000 perm   1013 sec   (1175 perm/sec)   p_kst 4.201681e-05   p_cons 3.075126e-01   p_joint 4.201681e-05

Joint ci ratio: 5.488979e-01	ci left: 3.092596e-05	ci right 5.493194e-05	k: 50	n:1200000
Cons ci ratio: 5.370693e-03	ci left: 3.066269e-01	ci right 3.082790e-01	k: 368943	n:1200000
KS ci ratio: 5.488979e-01	ci left: 3.092596e-05	ci right 5.493194e-05	k: 50	n:1200000
NEB   1200000 perm   1025 sec   (1170 perm/sec)   p_kst 4.166667e-05   p_cons 3.074525e-01   p_joint 4.166667e-05

Joint ci ratio: 5.435943e-01	ci left: 3.138268e-05	ci right 5.541747e-05	k: 51	n:1210000
Cons ci ratio: 5.348159e-03	ci left: 3.066539e-01	ci right 3.082991e-01	k: 372046	n:1210000
KS ci ratio: 5.435943e-01	ci left: 3.138268e-05	ci right 5.541747e-05	k: 51	n:1210000
NEB   1210000 perm   1038 sec   (1165 perm/sec)   p_kst 4.214876e-05   p_cons 3.074760e-01   p_joint 4.214876e-05

Joint ci ratio: 5.384415e-01	ci left: 3.183302e-05	ci right 5.589396e-05	k: 52	n:1220000
Cons ci ratio: 5.325772e-03	ci left: 3.066910e-01	ci right 3.083296e-01	k: 375162	n:1220000
KS ci ratio: 5.384415e-01	ci left: 3.183302e-05	ci right 5.589396e-05	k: 52	n:1220000
NEB   1220000 perm   1051 sec   (1161 perm/sec)   p_kst 4.262295e-05   p_cons 3.075098e-01   p_joint 4.262295e-05

Joint ci ratio: 5.334325e-01	ci left: 3.227710e-05	ci right 5.636166e-05	k: 53	n:1230000
Cons ci ratio: 5.303695e-03	ci left: 3.067252e-01	ci right 3.083570e-01	k: 378275	n:1230000
KS ci ratio: 5.334325e-01	ci left: 3.227710e-05	ci right 5.636166e-05	k: 53	n:1230000
NEB   1230000 perm   1064 sec   (1156 perm/sec)   p_kst 4.308943e-05   p_cons 3.075407e-01   p_joint 4.308943e-05

Joint ci ratio: 5.334326e-01	ci left: 3.201680e-05	ci right 5.590714e-05	k: 53	n:1240000
Cons ci ratio: 5.282090e-03	ci left: 3.067426e-01	ci right 3.083679e-01	k: 381368	n:1240000
KS ci ratio: 5.334326e-01	ci left: 3.201680e-05	ci right 5.590714e-05	k: 53	n:1240000
NEB   1240000 perm   1077 sec   (1152 perm/sec)   p_kst 4.274194e-05   p_cons 3.075548e-01   p_joint 4.274194e-05

Joint ci ratio: 5.285609e-01	ci left: 3.245333e-05	ci right 5.636626e-05	k: 54	n:1250000
Cons ci ratio: 5.261310e-03	ci left: 3.067143e-01	ci right 3.083330e-01	k: 384404	n:1250000
KS ci ratio: 5.285609e-01	ci left: 3.245333e-05	ci right 5.636626e-05	k: 54	n:1250000
NEB   1250000 perm   1090 sec   (1147 perm/sec)   p_kst 4.320000e-05   p_cons 3.075232e-01   p_joint 4.320000e-05

Joint ci ratio: 5.285609e-01	ci left: 3.219576e-05	ci right 5.591891e-05	k: 54	n:1260000
Cons ci ratio: 5.240314e-03	ci left: 3.067236e-01	ci right 3.083360e-01	k: 387487	n:1260000
KS ci ratio: 5.285609e-01	ci left: 3.219576e-05	ci right 5.591891e-05	k: 54	n:1260000
NEB   1260000 perm   1103 sec   (1142 perm/sec)   p_kst 4.285714e-05   p_cons 3.075294e-01   p_joint 4.285714e-05

Joint ci ratio: 5.285610e-01	ci left: 3.194225e-05	ci right 5.547861e-05	k: 54	n:1270000
Cons ci ratio: 5.219617e-03	ci left: 3.067290e-01	ci right 3.083349e-01	k: 390565	n:1270000
KS ci ratio: 5.285610e-01	ci left: 3.194225e-05	ci right 5.547861e-05	k: 54	n:1270000
NEB   1270000 perm   1116 sec   (1138 perm/sec)   p_kst 4.251969e-05   p_cons 3.075315e-01   p_joint 4.251969e-05

Joint ci ratio: 5.285611e-01	ci left: 3.169270e-05	ci right 5.504518e-05	k: 54	n:1280000
Cons ci ratio: 5.198981e-03	ci left: 3.067490e-01	ci right 3.083487e-01	k: 393662	n:1280000
KS ci ratio: 5.285611e-01	ci left: 3.169270e-05	ci right 5.504518e-05	k: 54	n:1280000
NEB   1280000 perm   1129 sec   (1133 perm/sec)   p_kst 4.218750e-05   p_cons 3.075484e-01   p_joint 4.218750e-05

Joint ci ratio: 5.238205e-01	ci left: 3.211917e-05	ci right 5.549581e-05	k: 55	n:1290000
Cons ci ratio: 5.178955e-03	ci left: 3.067386e-01	ci right 3.083320e-01	k: 396720	n:1290000
KS ci ratio: 5.238205e-01	ci left: 3.211917e-05	ci right 5.549581e-05	k: 55	n:1290000
NEB   1290000 perm   1143 sec   (1129 perm/sec)   p_kst 4.263566e-05   p_cons 3.075349e-01   p_joint 4.263566e-05

Joint ci ratio: 5.238206e-01	ci left: 3.187210e-05	ci right 5.506893e-05	k: 55	n:1300000
Cons ci ratio: 5.159122e-03	ci left: 3.067314e-01	ci right 3.083187e-01	k: 399782	n:1300000
KS ci ratio: 5.238206e-01	ci left: 3.187210e-05	ci right 5.506893e-05	k: 55	n:1300000
NEB   1300000 perm   1156 sec   (1125 perm/sec)   p_kst 4.230769e-05   p_cons 3.075246e-01   p_joint 4.230769e-05

Joint ci ratio: 5.238206e-01	ci left: 3.162880e-05	ci right 5.464855e-05	k: 55	n:1310000
Cons ci ratio: 5.139690e-03	ci left: 3.067098e-01	ci right 3.082910e-01	k: 402825	n:1310000
KS ci ratio: 5.238206e-01	ci left: 3.162880e-05	ci right 5.464855e-05	k: 55	n:1310000
NEB   1310000 perm   1170 sec   (1120 perm/sec)   p_kst 4.198473e-05   p_cons 3.075000e-01   p_joint 4.198473e-05

Joint ci ratio: 5.192053e-01	ci left: 3.204697e-05	ci right 5.509106e-05	k: 56	n:1320000
Cons ci ratio: 5.119975e-03	ci left: 3.067302e-01	ci right 3.083055e-01	k: 405923	n:1320000
KS ci ratio: 5.192053e-01	ci left: 3.204697e-05	ci right 5.509106e-05	k: 56	n:1320000
NEB   1320000 perm   1183 sec   (1116 perm/sec)   p_kst 4.242424e-05   p_cons 3.075174e-01   p_joint 4.242424e-05

Joint ci ratio: 5.147098e-01	ci left: 3.245974e-05	ci right 5.552605e-05	k: 57	n:1330000
Cons ci ratio: 5.101098e-03	ci left: 3.066993e-01	ci right 3.082685e-01	k: 408953	n:1330000
KS ci ratio: 5.147098e-01	ci left: 3.245974e-05	ci right 5.552605e-05	k: 57	n:1330000
NEB   1330000 perm   1197 sec   (1111 perm/sec)   p_kst 4.285714e-05   p_cons 3.074835e-01   p_joint 4.285714e-05

Joint ci ratio: 5.147099e-01	ci left: 3.221750e-05	ci right 5.511168e-05	k: 57	n:1340000
Cons ci ratio: 5.081172e-03	ci left: 3.067739e-01	ci right 3.083374e-01	k: 412124	n:1340000
KS ci ratio: 5.147099e-01	ci left: 3.221750e-05	ci right 5.511168e-05	k: 57	n:1340000
NEB   1340000 perm   1211 sec   (1107 perm/sec)   p_kst 4.253731e-05   p_cons 3.075552e-01   p_joint 4.253731e-05

Joint ci ratio: 5.147100e-01	ci left: 3.197885e-05	ci right 5.470344e-05	k: 57	n:1350000
Cons ci ratio: 5.061407e-03	ci left: 3.068534e-01	ci right 3.084111e-01	k: 415303	n:1350000
KS ci ratio: 5.147100e-01	ci left: 3.197885e-05	ci right 5.470344e-05	k: 57	n:1350000
NEB   1350000 perm   1224 sec   (1103 perm/sec)   p_kst 4.222222e-05   p_cons 3.076319e-01   p_joint 4.222222e-05

Joint ci ratio: 5.103293e-01	ci left: 3.238385e-05	ci right 5.513087e-05	k: 58	n:1360000
Cons ci ratio: 5.042550e-03	ci left: 3.068744e-01	ci right 3.084264e-01	k: 418404	n:1360000
KS ci ratio: 5.103293e-01	ci left: 3.238385e-05	ci right 5.513087e-05	k: 58	n:1360000
NEB   1360000 perm   1238 sec   (1098 perm/sec)   p_kst 4.264706e-05   p_cons 3.076500e-01   p_joint 4.264706e-05

Joint ci ratio: 5.060586e-01	ci left: 3.278376e-05	ci right 5.555126e-05	k: 59	n:1370000
Cons ci ratio: 5.024410e-03	ci left: 3.068521e-01	ci right 3.083984e-01	k: 421446	n:1370000
KS ci ratio: 5.060586e-01	ci left: 3.278376e-05	ci right 5.555126e-05	k: 59	n:1370000
NEB   1370000 perm   1252 sec   (1094 perm/sec)   p_kst 4.306569e-05   p_cons 3.076248e-01   p_joint 4.306569e-05

Joint ci ratio: 5.018933e-01	ci left: 3.317865e-05	ci right 5.596479e-05	k: 60	n:1380000
Cons ci ratio: 5.005962e-03	ci left: 3.068728e-01	ci right 3.084135e-01	k: 424547	n:1380000
KS ci ratio: 5.018933e-01	ci left: 3.317865e-05	ci right 5.596479e-05	k: 60	n:1380000
NEB   1380000 perm   1266 sec   (1090 perm/sec)   p_kst 4.347826e-05   p_cons 3.076428e-01   p_joint 4.347826e-05

Joint ci ratio: 5.018934e-01	ci left: 3.293996e-05	ci right 5.556217e-05	k: 60	n:1390000
Cons ci ratio: 4.987438e-03	ci left: 3.069169e-01	ci right 3.084522e-01	k: 427681	n:1390000
KS ci ratio: 5.018934e-01	ci left: 3.293996e-05	ci right 5.556217e-05	k: 60	n:1390000
NEB   1390000 perm   1280 sec   (1086 perm/sec)   p_kst 4.316547e-05   p_cons 3.076842e-01   p_joint 4.316547e-05

Joint ci ratio: 4.938623e-01	ci left: 3.395377e-05	ci right 5.677193e-05	k: 62	n:1400000
Cons ci ratio: 4.970175e-03	ci left: 3.068698e-01	ci right 3.083995e-01	k: 430688	n:1400000
KS ci ratio: 4.938623e-01	ci left: 3.395377e-05	ci right 5.677193e-05	k: 62	n:1400000
NEB   1400000 perm   1294 sec   (1082 perm/sec)   p_kst 4.428571e-05   p_cons 3.076343e-01   p_joint 4.428571e-05

Joint ci ratio: 4.899887e-01	ci left: 3.433416e-05	ci right 5.716586e-05	k: 63	n:1410000
Cons ci ratio: 4.952415e-03	ci left: 3.068815e-01	ci right 3.084058e-01	k: 433777	n:1410000
KS ci ratio: 4.899887e-01	ci left: 3.433416e-05	ci right 5.716586e-05	k: 63	n:1410000
NEB   1410000 perm   1308 sec   (1078 perm/sec)   p_kst 4.468085e-05   p_cons 3.076433e-01   p_joint 4.468085e-05

Joint ci ratio: 4.862049e-01	ci left: 3.470988e-05	ci right 5.755356e-05	k: 64	n:1420000
Cons ci ratio: 4.935700e-03	ci left: 3.068192e-01	ci right 3.083380e-01	k: 436761	n:1420000
KS ci ratio: 4.862049e-01	ci left: 3.470988e-05	ci right 5.755356e-05	k: 64	n:1420000
NEB   1420000 perm   1323 sec   (1074 perm/sec)   p_kst 4.507042e-05   p_cons 3.075782e-01   p_joint 4.507042e-05

Joint ci ratio: 4.862049e-01	ci left: 3.446716e-05	ci right 5.715109e-05	k: 64	n:1430000
Cons ci ratio: 4.918790e-03	ci left: 3.067891e-01	ci right 3.083026e-01	k: 439790	n:1430000
KS ci ratio: 4.862049e-01	ci left: 3.446716e-05	ci right 5.715109e-05	k: 64	n:1430000
NEB   1430000 perm   1337 sec   (1069 perm/sec)   p_kst 4.475524e-05   p_cons 3.075455e-01   p_joint 4.475524e-05

Joint ci ratio: 4.862050e-01	ci left: 3.422780e-05	ci right 5.675421e-05	k: 64	n:1440000
Cons ci ratio: 4.901981e-03	ci left: 3.067658e-01	ci right 3.082739e-01	k: 442828	n:1440000
KS ci ratio: 4.862050e-01	ci left: 3.422780e-05	ci right 5.675421e-05	k: 64	n:1440000
NEB   1440000 perm   1352 sec   (1065 perm/sec)   p_kst 4.444444e-05   p_cons 3.075194e-01   p_joint 4.444444e-05

Joint ci ratio: 4.825075e-01	ci left: 3.459715e-05	ci right 5.713609e-05	k: 65	n:1450000
Cons ci ratio: 4.884646e-03	ci left: 3.068034e-01	ci right 3.083063e-01	k: 445954	n:1450000
KS ci ratio: 4.825075e-01	ci left: 3.459715e-05	ci right 5.713609e-05	k: 65	n:1450000
NEB   1450000 perm   1367 sec   (1061 perm/sec)   p_kst 4.482759e-05   p_cons 3.075545e-01   p_joint 4.482759e-05

Joint ci ratio: 4.825076e-01	ci left: 3.436018e-05	ci right 5.674475e-05	k: 65	n:1460000
Cons ci ratio: 4.867330e-03	ci left: 3.068549e-01	ci right 3.083527e-01	k: 449101	n:1460000
KS ci ratio: 4.825076e-01	ci left: 3.436018e-05	ci right 5.674475e-05	k: 65	n:1460000
NEB   1460000 perm   1381 sec   (1057 perm/sec)   p_kst 4.452055e-05   p_cons 3.076034e-01   p_joint 4.452055e-05

Joint ci ratio: 4.825076e-01	ci left: 3.412644e-05	ci right 5.635873e-05	k: 65	n:1470000
Cons ci ratio: 4.850568e-03	ci left: 3.068730e-01	ci right 3.083658e-01	k: 452200	n:1470000
KS ci ratio: 4.825076e-01	ci left: 3.412644e-05	ci right 5.635873e-05	k: 65	n:1470000
NEB   1470000 perm   1396 sec   (1053 perm/sec)   p_kst 4.421769e-05   p_cons 3.076190e-01   p_joint 4.421769e-05

Joint ci ratio: 4.825077e-01	ci left: 3.389585e-05	ci right 5.597793e-05	k: 65	n:1480000
Cons ci ratio: 4.833480e-03	ci left: 3.069349e-01	ci right 3.084227e-01	k: 455364	n:1480000
KS ci ratio: 4.825077e-01	ci left: 3.389585e-05	ci right 5.597793e-05	k: 65	n:1480000
NEB   1480000 perm   1411 sec   (1049 perm/sec)   p_kst 4.391892e-05   p_cons 3.076784e-01   p_joint 4.391892e-05

Joint ci ratio: 4.825078e-01	ci left: 3.366836e-05	ci right 5.560224e-05	k: 65	n:1490000
Cons ci ratio: 4.816610e-03	ci left: 3.069925e-01	ci right 3.084754e-01	k: 458523	n:1490000
KS ci ratio: 4.825078e-01	ci left: 3.366836e-05	ci right 5.560224e-05	k: 65	n:1490000
NEB   1490000 perm   1426 sec   (1045 perm/sec)   p_kst 4.362416e-05   p_cons 3.077336e-01   p_joint 4.362416e-05

Joint ci ratio: 4.788934e-01	ci left: 3.402976e-05	ci right 5.597845e-05	k: 66	n:1500000
Cons ci ratio: 4.800883e-03	ci left: 3.069634e-01	ci right 3.084413e-01	k: 461553	n:1500000
KS ci ratio: 4.788934e-01	ci left: 3.402976e-05	ci right 5.597845e-05	k: 66	n:1500000
NEB   1500000 perm   1441 sec   (1041 perm/sec)   p_kst 4.400000e-05   p_cons 3.077020e-01   p_joint 4.400000e-05

Joint ci ratio: 4.788934e-01	ci left: 3.380439e-05	ci right 5.560774e-05	k: 66	n:1510000
Cons ci ratio: 4.785176e-03	ci left: 3.069467e-01	ci right 3.084196e-01	k: 464601	n:1510000
KS ci ratio: 4.788934e-01	ci left: 3.380439e-05	ci right 5.560774e-05	k: 66	n:1510000
NEB   1510000 perm   1456 sec   (1037 perm/sec)   p_kst 4.370861e-05   p_cons 3.076828e-01   p_joint 4.370861e-05

Joint ci ratio: 4.788935e-01	ci left: 3.358199e-05	ci right 5.524190e-05	k: 66	n:1520000
Cons ci ratio: 4.769776e-03	ci left: 3.069163e-01	ci right 3.083844e-01	k: 467628	n:1520000
KS ci ratio: 4.788935e-01	ci left: 3.358199e-05	ci right 5.524190e-05	k: 66	n:1520000
NEB   1520000 perm   1471 sec   (1033 perm/sec)   p_kst 4.342105e-05   p_cons 3.076500e-01   p_joint 4.342105e-05

Joint ci ratio: 4.719017e-01	ci left: 3.451301e-05	ci right 5.634359e-05	k: 68	n:1530000
Cons ci ratio: 4.754298e-03	ci left: 3.069067e-01	ci right 3.083699e-01	k: 470686	n:1530000
KS ci ratio: 4.719017e-01	ci left: 3.451301e-05	ci right 5.634359e-05	k: 68	n:1530000
NEB   1530000 perm   1487 sec   (1029 perm/sec)   p_kst 4.444444e-05   p_cons 3.076379e-01   p_joint 4.444444e-05

Joint ci ratio: 4.719018e-01	ci left: 3.428890e-05	ci right 5.597772e-05	k: 68	n:1540000
Cons ci ratio: 4.739114e-03	ci left: 3.068841e-01	ci right 3.083426e-01	k: 473724	n:1540000
KS ci ratio: 4.719018e-01	ci left: 3.428890e-05	ci right 5.597772e-05	k: 68	n:1540000
NEB   1540000 perm   1502 sec   (1025 perm/sec)   p_kst 4.415584e-05   p_cons 3.076130e-01   p_joint 4.415584e-05

Joint ci ratio: 4.719019e-01	ci left: 3.406768e-05	ci right 5.561658e-05	k: 68	n:1550000
Cons ci ratio: 4.723409e-03	ci left: 3.069219e-01	ci right 3.083756e-01	k: 476855	n:1550000
KS ci ratio: 4.719019e-01	ci left: 3.406768e-05	ci right 5.561658e-05	k: 68	n:1550000
NEB   1550000 perm   1517 sec   (1022 perm/sec)   p_kst 4.387097e-05   p_cons 3.076484e-01   p_joint 4.387097e-05

Joint ci ratio: 4.685190e-01	ci left: 3.441434e-05	ci right 5.597654e-05	k: 69	n:1560000
Cons ci ratio: 4.707661e-03	ci left: 3.069771e-01	ci right 3.084262e-01	k: 480014	n:1560000
KS ci ratio: 4.685190e-01	ci left: 3.441434e-05	ci right 5.597654e-05	k: 69	n:1560000
NEB   1560000 perm   1533 sec   (1018 perm/sec)   p_kst 4.423077e-05   p_cons 3.077013e-01   p_joint 4.423077e-05

Joint ci ratio: 4.685190e-01	ci left: 3.419514e-05	ci right 5.562000e-05	k: 69	n:1570000
Cons ci ratio: 4.692329e-03	ci left: 3.070080e-01	ci right 3.084526e-01	k: 483136	n:1570000
KS ci ratio: 4.685190e-01	ci left: 3.419514e-05	ci right 5.562000e-05	k: 69	n:1570000
NEB   1570000 perm   1549 sec   (1014 perm/sec)   p_kst 4.394904e-05   p_cons 3.077299e-01   p_joint 4.394904e-05

Joint ci ratio: 4.685191e-01	ci left: 3.397871e-05	ci right 5.526798e-05	k: 69	n:1580000
Cons ci ratio: 4.677751e-03	ci left: 3.069835e-01	ci right 3.084235e-01	k: 486171	n:1580000
KS ci ratio: 4.685191e-01	ci left: 3.397871e-05	ci right 5.526798e-05	k: 69	n:1580000
NEB   1580000 perm   1564 sec   (1010 perm/sec)   p_kst 4.367089e-05   p_cons 3.077032e-01   p_joint 4.367089e-05

Joint ci ratio: 4.685192e-01	ci left: 3.376501e-05	ci right 5.492039e-05	k: 69	n:1590000
Cons ci ratio: 4.663052e-03	ci left: 3.069826e-01	ci right 3.084181e-01	k: 489243	n:1590000
KS ci ratio: 4.685192e-01	ci left: 3.376501e-05	ci right 5.492039e-05	k: 69	n:1590000
NEB   1590000 perm   1579 sec   (1007 perm/sec)   p_kst 4.339623e-05   p_cons 3.077000e-01   p_joint 4.339623e-05

Joint ci ratio: 4.685192e-01	ci left: 3.355397e-05	ci right 5.457714e-05	k: 69	n:1600000
Cons ci ratio: 4.648757e-03	ci left: 3.069574e-01	ci right 3.083883e-01	k: 492276	n:1600000
KS ci ratio: 4.685192e-01	ci left: 3.355397e-05	ci right 5.457714e-05	k: 69	n:1600000
NEB   1600000 perm   1595 sec   (1003 perm/sec)   p_kst 4.312500e-05   p_cons 3.076725e-01   p_joint 4.312500e-05

Joint ci ratio: 4.685193e-01	ci left: 3.334556e-05	ci right 5.423815e-05	k: 69	n:1610000
Cons ci ratio: 4.633965e-03	ci left: 3.069902e-01	ci right 3.084167e-01	k: 495402	n:1610000
KS ci ratio: 4.685193e-01	ci left: 3.334556e-05	ci right 5.423815e-05	k: 69	n:1610000
NEB   1610000 perm   1611 sec   (999 perm/sec)   p_kst 4.285714e-05   p_cons 3.077031e-01   p_joint 4.285714e-05

Joint ci ratio: 4.652081e-01	ci left: 3.368437e-05	ci right 5.459277e-05	k: 70	n:1620000
Cons ci ratio: 4.619962e-03	ci left: 3.069628e-01	ci right 3.083848e-01	k: 498431	n:1620000
KS ci ratio: 4.652081e-01	ci left: 3.368437e-05	ci right 5.459277e-05	k: 70	n:1620000
NEB   1620000 perm   1627 sec   (996 perm/sec)   p_kst 4.320988e-05   p_cons 3.076735e-01   p_joint 4.320988e-05

Joint ci ratio: 4.652081e-01	ci left: 3.347772e-05	ci right 5.425785e-05	k: 70	n:1630000
Cons ci ratio: 4.606039e-03	ci left: 3.069400e-01	ci right 3.083576e-01	k: 501467	n:1630000
KS ci ratio: 4.652081e-01	ci left: 3.347772e-05	ci right 5.425785e-05	k: 70	n:1630000
NEB   1630000 perm   1643 sec   (992 perm/sec)   p_kst 4.294479e-05   p_cons 3.076485e-01   p_joint 4.294479e-05

Joint ci ratio: 4.652082e-01	ci left: 3.327358e-05	ci right 5.392701e-05	k: 70	n:1640000
Cons ci ratio: 4.591688e-03	ci left: 3.069687e-01	ci right 3.083820e-01	k: 504587	n:1640000
KS ci ratio: 4.652082e-01	ci left: 3.327358e-05	ci right 5.392701e-05	k: 70	n:1640000
NEB   1640000 perm   1659 sec   (989 perm/sec)   p_kst 4.268293e-05   p_cons 3.076750e-01   p_joint 4.268293e-05

Joint ci ratio: 4.652083e-01	ci left: 3.307192e-05	ci right 5.360018e-05	k: 70	n:1650000
Cons ci ratio: 4.577947e-03	ci left: 3.069528e-01	ci right 3.083618e-01	k: 507634	n:1650000
KS ci ratio: 4.652083e-01	ci left: 3.307192e-05	ci right 5.360018e-05	k: 70	n:1650000
NEB   1650000 perm   1675 sec   (985 perm/sec)   p_kst 4.242424e-05   p_cons 3.076570e-01   p_joint 4.242424e-05

Joint ci ratio: 4.619663e-01	ci left: 3.340472e-05	ci right 5.394960e-05	k: 71	n:1660000
Cons ci ratio: 4.563979e-03	ci left: 3.069696e-01	ci right 3.083744e-01	k: 510735	n:1660000
KS ci ratio: 4.619663e-01	ci left: 3.340472e-05	ci right 5.394960e-05	k: 71	n:1660000
NEB   1660000 perm   1691 sec   (981 perm/sec)   p_kst 4.277108e-05   p_cons 3.076717e-01   p_joint 4.277108e-05

Joint ci ratio: 4.587911e-01	ci left: 3.373402e-05	ci right 5.429436e-05	k: 72	n:1670000
Cons ci ratio: 4.550037e-03	ci left: 3.069958e-01	ci right 3.083964e-01	k: 513852	n:1670000
KS ci ratio: 4.587911e-01	ci left: 3.373402e-05	ci right 5.429436e-05	k: 72	n:1670000
NEB   1670000 perm   1708 sec   (978 perm/sec)   p_kst 4.311377e-05   p_cons 3.076958e-01   p_joint 4.311377e-05

Joint ci ratio: 4.556806e-01	ci left: 3.405988e-05	ci right 5.463454e-05	k: 73	n:1680000
Cons ci ratio: 4.536474e-03	ci left: 3.069980e-01	ci right 3.083944e-01	k: 516929	n:1680000
KS ci ratio: 4.556806e-01	ci left: 3.405988e-05	ci right 5.463454e-05	k: 73	n:1680000
NEB   1680000 perm   1724 sec   (975 perm/sec)   p_kst 4.345238e-05   p_cons 3.076958e-01   p_joint 4.345238e-05

Joint ci ratio: 4.526324e-01	ci left: 3.438235e-05	ci right 5.497024e-05	k: 74	n:1690000
Cons ci ratio: 4.523020e-03	ci left: 3.070012e-01	ci right 3.083935e-01	k: 520008	n:1690000
KS ci ratio: 4.526324e-01	ci left: 3.438235e-05	ci right 5.497024e-05	k: 74	n:1690000
NEB   1690000 perm   1740 sec   (971 perm/sec)   p_kst 4.378698e-05   p_cons 3.076970e-01   p_joint 4.378698e-05

Joint ci ratio: 4.526325e-01	ci left: 3.418010e-05	ci right 5.464689e-05	k: 74	n:1700000
Cons ci ratio: 4.509560e-03	ci left: 3.070162e-01	ci right 3.084044e-01	k: 523107	n:1700000
KS ci ratio: 4.526325e-01	ci left: 3.418010e-05	ci right 5.464689e-05	k: 74	n:1700000
NEB   1700000 perm   1757 sec   (968 perm/sec)   p_kst 4.352941e-05   p_cons 3.077100e-01   p_joint 4.352941e-05

Joint ci ratio: 4.526326e-01	ci left: 3.398022e-05	ci right 5.432732e-05	k: 74	n:1710000
Cons ci ratio: 4.495727e-03	ci left: 3.070778e-01	ci right 3.084620e-01	k: 526286	n:1710000
KS ci ratio: 4.526326e-01	ci left: 3.398022e-05	ci right 5.432732e-05	k: 74	n:1710000
NEB   1710000 perm   1773 sec   (964 perm/sec)   p_kst 4.327485e-05   p_cons 3.077696e-01   p_joint 4.327485e-05

Joint ci ratio: 4.526326e-01	ci left: 3.378266e-05	ci right 5.401146e-05	k: 74	n:1720000
Cons ci ratio: 4.482973e-03	ci left: 3.070480e-01	ci right 3.084282e-01	k: 529309	n:1720000
KS ci ratio: 4.526326e-01	ci left: 3.378266e-05	ci right 5.401146e-05	k: 74	n:1720000
NEB   1720000 perm   1790 sec   (961 perm/sec)   p_kst 4.302326e-05   p_cons 3.077378e-01   p_joint 4.302326e-05

Joint ci ratio: 4.526327e-01	ci left: 3.358738e-05	ci right 5.369926e-05	k: 74	n:1730000
Cons ci ratio: 4.469654e-03	ci left: 3.070828e-01	ci right 3.084589e-01	k: 532443	n:1730000
KS ci ratio: 4.526327e-01	ci left: 3.358738e-05	ci right 5.369926e-05	k: 74	n:1730000
NEB   1730000 perm   1806 sec   (958 perm/sec)   p_kst 4.277457e-05   p_cons 3.077705e-01   p_joint 4.277457e-05

Joint ci ratio: 4.526327e-01	ci left: 3.339435e-05	ci right 5.339064e-05	k: 74	n:1740000
Cons ci ratio: 4.457091e-03	ci left: 3.070562e-01	ci right 3.084284e-01	k: 535471	n:1740000
KS ci ratio: 4.526327e-01	ci left: 3.339435e-05	ci right 5.339064e-05	k: 74	n:1740000
NEB   1740000 perm   1823 sec   (954 perm/sec)   p_kst 4.252874e-05   p_cons 3.077420e-01   p_joint 4.252874e-05

Joint ci ratio: 4.496449e-01	ci left: 3.371001e-05	ci right 5.372151e-05	k: 75	n:1750000
Cons ci ratio: 4.444716e-03	ci left: 3.070219e-01	ci right 3.083901e-01	k: 538485	n:1750000
KS ci ratio: 4.496449e-01	ci left: 3.371001e-05	ci right 5.372151e-05	k: 75	n:1750000
NEB   1750000 perm   1840 sec   (951 perm/sec)   p_kst 4.285714e-05   p_cons 3.077057e-01   p_joint 4.285714e-05

Joint ci ratio: 4.467156e-01	ci left: 3.402251e-05	ci right 5.404819e-05	k: 76	n:1760000
Cons ci ratio: 4.432131e-03	ci left: 3.070182e-01	ci right 3.083825e-01	k: 541552	n:1760000
KS ci ratio: 4.467156e-01	ci left: 3.402251e-05	ci right 5.404819e-05	k: 76	n:1760000
NEB   1760000 perm   1857 sec   (948 perm/sec)   p_kst 4.318182e-05   p_cons 3.077000e-01   p_joint 4.318182e-05

Joint ci ratio: 4.467156e-01	ci left: 3.383029e-05	ci right 5.374284e-05	k: 76	n:1770000
Cons ci ratio: 4.420021e-03	ci left: 3.069789e-01	ci right 3.083393e-01	k: 544556	n:1770000
KS ci ratio: 4.467156e-01	ci left: 3.383029e-05	ci right 5.374284e-05	k: 76	n:1770000
NEB   1770000 perm   1873 sec   (945 perm/sec)   p_kst 4.293785e-05   p_cons 3.076588e-01   p_joint 4.293785e-05

Joint ci ratio: 4.410245e-01	ci left: 3.463822e-05	ci right 5.468933e-05	k: 78	n:1780000
Cons ci ratio: 4.407585e-03	ci left: 3.069810e-01	ci right 3.083376e-01	k: 547633	n:1780000
KS ci ratio: 4.410245e-01	ci left: 3.463822e-05	ci right 5.468933e-05	k: 78	n:1780000
NEB   1780000 perm   1890 sec   (942 perm/sec)   p_kst 4.382022e-05   p_cons 3.076590e-01   p_joint 4.382022e-05

Joint ci ratio: 4.382594e-01	ci left: 3.494152e-05	ci right 5.500393e-05	k: 79	n:1790000
Cons ci ratio: 4.394804e-03	ci left: 3.070267e-01	ci right 3.083795e-01	k: 550788	n:1790000
KS ci ratio: 4.382594e-01	ci left: 3.494152e-05	ci right 5.500393e-05	k: 79	n:1790000
NEB   1790000 perm   1907 sec   (938 perm/sec)   p_kst 4.413408e-05   p_cons 3.077028e-01   p_joint 4.413408e-05

Joint ci ratio: 4.382595e-01	ci left: 3.474740e-05	ci right 5.469836e-05	k: 79	n:1800000
Cons ci ratio: 4.382163e-03	ci left: 3.070691e-01	ci right 3.084182e-01	k: 553938	n:1800000
KS ci ratio: 4.382595e-01	ci left: 3.474740e-05	ci right 5.469836e-05	k: 79	n:1800000
NEB   1800000 perm   1924 sec   (935 perm/sec)   p_kst 4.388889e-05   p_cons 3.077433e-01   p_joint 4.388889e-05

Joint ci ratio: 4.355457e-01	ci left: 3.504713e-05	ci right 5.500905e-05	k: 80	n:1810000
Cons ci ratio: 4.370411e-03	ci left: 3.070348e-01	ci right 3.083802e-01	k: 556950	n:1810000
KS ci ratio: 4.355457e-01	ci left: 3.504713e-05	ci right 5.500905e-05	k: 80	n:1810000
NEB   1810000 perm   1941 sec   (932 perm/sec)   p_kst 4.419890e-05   p_cons 3.077072e-01   p_joint 4.419890e-05

Joint ci ratio: 4.355457e-01	ci left: 3.485456e-05	ci right 5.470681e-05	k: 80	n:1820000
Cons ci ratio: 4.358006e-03	ci left: 3.070740e-01	ci right 3.084157e-01	k: 560095	n:1820000
KS ci ratio: 4.355457e-01	ci left: 3.485456e-05	ci right 5.470681e-05	k: 80	n:1820000
NEB   1820000 perm   1958 sec   (929 perm/sec)   p_kst 4.395604e-05   p_cons 3.077445e-01   p_joint 4.395604e-05

Joint ci ratio: 4.355458e-01	ci left: 3.466410e-05	ci right 5.440786e-05	k: 80	n:1830000
Cons ci ratio: 4.345729e-03	ci left: 3.071105e-01	ci right 3.084486e-01	k: 563236	n:1830000
KS ci ratio: 4.355458e-01	ci left: 3.466410e-05	ci right 5.440786e-05	k: 80	n:1830000
NEB   1830000 perm   1976 sec   (926 perm/sec)   p_kst 4.371585e-05   p_cons 3.077792e-01   p_joint 4.371585e-05

Joint ci ratio: 4.355459e-01	ci left: 3.447570e-05	ci right 5.411217e-05	k: 80	n:1840000
Cons ci ratio: 4.334245e-03	ci left: 3.070788e-01	ci right 3.084131e-01	k: 566252	n:1840000
KS ci ratio: 4.355459e-01	ci left: 3.447570e-05	ci right 5.411217e-05	k: 80	n:1840000
NEB   1840000 perm   1993 sec   (923 perm/sec)   p_kst 4.347826e-05   p_cons 3.077457e-01   p_joint 4.347826e-05

Joint ci ratio: 4.302661e-01	ci left: 3.525260e-05	ci right 5.501788e-05	k: 82	n:1850000
Cons ci ratio: 4.322079e-03	ci left: 3.071235e-01	ci right 3.084544e-01	k: 569409	n:1850000
KS ci ratio: 4.302661e-01	ci left: 3.525260e-05	ci right 5.501788e-05	k: 82	n:1850000
NEB   1850000 perm   2011 sec   (920 perm/sec)   p_kst 4.432432e-05   p_cons 3.077886e-01   p_joint 4.432432e-05

Joint ci ratio: 4.276973e-01	ci left: 3.554264e-05	ci right 5.531744e-05	k: 83	n:1860000
Cons ci ratio: 4.310428e-03	ci left: 3.071270e-01	ci right 3.084542e-01	k: 572490	n:1860000
KS ci ratio: 4.276973e-01	ci left: 3.554264e-05	ci right 5.531744e-05	k: 83	n:1860000
NEB   1860000 perm   2029 sec   (917 perm/sec)   p_kst 4.462366e-05   p_cons 3.077903e-01   p_joint 4.462366e-05

Joint ci ratio: 4.276973e-01	ci left: 3.535258e-05	ci right 5.502163e-05	k: 83	n:1870000
Cons ci ratio: 4.299124e-03	ci left: 3.071053e-01	ci right 3.084290e-01	k: 575524	n:1870000
KS ci ratio: 4.276973e-01	ci left: 3.535258e-05	ci right 5.502163e-05	k: 83	n:1870000
NEB   1870000 perm   2047 sec   (914 perm/sec)   p_kst 4.438503e-05   p_cons 3.077668e-01   p_joint 4.438503e-05

Joint ci ratio: 4.251740e-01	ci left: 3.563935e-05	ci right 5.531764e-05	k: 84	n:1880000
Cons ci ratio: 4.287534e-03	ci left: 3.071211e-01	ci right 3.084412e-01	k: 578628	n:1880000
KS ci ratio: 4.251740e-01	ci left: 3.563935e-05	ci right 5.531764e-05	k: 84	n:1880000
NEB   1880000 perm   2064 sec   (911 perm/sec)   p_kst 4.468085e-05   p_cons 3.077809e-01   p_joint 4.468085e-05

Joint ci ratio: 4.251740e-01	ci left: 3.545078e-05	ci right 5.502496e-05	k: 84	n:1890000
Cons ci ratio: 4.276643e-03	ci left: 3.070764e-01	ci right 3.083930e-01	k: 581618	n:1890000
KS ci ratio: 4.251740e-01	ci left: 3.545078e-05	ci right 5.502496e-05	k: 84	n:1890000
NEB   1890000 perm   2082 sec   (908 perm/sec)   p_kst 4.444444e-05   p_cons 3.077344e-01   p_joint 4.444444e-05

Joint ci ratio: 4.251741e-01	ci left: 3.526420e-05	ci right 5.473535e-05	k: 84	n:1900000
Cons ci ratio: 4.265323e-03	ci left: 3.070832e-01	ci right 3.083963e-01	k: 584705	n:1900000
KS ci ratio: 4.251741e-01	ci left: 3.526420e-05	ci right 5.473535e-05	k: 84	n:1900000
NEB   1900000 perm   2100 sec   (905 perm/sec)   p_kst 4.421053e-05   p_cons 3.077395e-01   p_joint 4.421053e-05

Joint ci ratio: 4.251741e-01	ci left: 3.507957e-05	ci right 5.444878e-05	k: 84	n:1910000
Cons ci ratio: 4.254411e-03	ci left: 3.070580e-01	ci right 3.083677e-01	k: 587731	n:1910000
KS ci ratio: 4.251741e-01	ci left: 3.507957e-05	ci right 5.444878e-05	k: 84	n:1910000
NEB   1910000 perm   2118 sec   (902 perm/sec)   p_kst 4.397906e-05   p_cons 3.077126e-01   p_joint 4.397906e-05

Joint ci ratio: 4.251742e-01	ci left: 3.489686e-05	ci right 5.416519e-05	k: 84	n:1920000
Cons ci ratio: 4.243515e-03	ci left: 3.070399e-01	ci right 3.083461e-01	k: 590770	n:1920000
KS ci ratio: 4.251742e-01	ci left: 3.489686e-05	ci right 5.416519e-05	k: 84	n:1920000
NEB   1920000 perm   2136 sec   (899 perm/sec)   p_kst 4.375000e-05   p_cons 3.076927e-01   p_joint 4.375000e-05

Joint ci ratio: 4.251742e-01	ci left: 3.471605e-05	ci right 5.388455e-05	k: 84	n:1930000
Cons ci ratio: 4.232435e-03	ci left: 3.070489e-01	ci right 3.083517e-01	k: 593861	n:1930000
KS ci ratio: 4.251742e-01	ci left: 3.471605e-05	ci right 5.388455e-05	k: 84	n:1930000
NEB   1930000 perm   2155 sec   (896 perm/sec)   p_kst 4.352332e-05   p_cons 3.077000e-01   p_joint 4.352332e-05

Joint ci ratio: 4.251743e-01	ci left: 3.453710e-05	ci right 5.360679e-05	k: 84	n:1940000
Cons ci ratio: 4.221702e-03	ci left: 3.070315e-01	ci right 3.083309e-01	k: 596901	n:1940000
KS ci ratio: 4.251743e-01	ci left: 3.453710e-05	ci right 5.360679e-05	k: 84	n:1940000
NEB   1940000 perm   2173 sec   (893 perm/sec)   p_kst 4.329897e-05   p_cons 3.076809e-01   p_joint 4.329897e-05

Joint ci ratio: 4.251743e-01	ci left: 3.435998e-05	ci right 5.333189e-05	k: 84	n:1950000
Cons ci ratio: 4.210745e-03	ci left: 3.070451e-01	ci right 3.083412e-01	k: 600001	n:1950000
KS ci ratio: 4.251743e-01	ci left: 3.435998e-05	ci right 5.333189e-05	k: 84	n:1950000
NEB   1950000 perm   2191 sec   (890 perm/sec)   p_kst 4.307692e-05   p_cons 3.076928e-01   p_joint 4.307692e-05

Joint ci ratio: 4.202587e-01	ci left: 3.509652e-05	ci right 5.418814e-05	k: 86	n:1960000
Cons ci ratio: 4.200070e-03	ci left: 3.070386e-01	ci right 3.083314e-01	k: 603062	n:1960000
KS ci ratio: 4.202587e-01	ci left: 3.509652e-05	ci right 5.418814e-05	k: 86	n:1960000
NEB   1960000 perm   2210 sec   (887 perm/sec)   p_kst 4.387755e-05   p_cons 3.076847e-01   p_joint 4.387755e-05

Joint ci ratio: 4.202587e-01	ci left: 3.491837e-05	ci right 5.391307e-05	k: 86	n:1970000
Cons ci ratio: 4.189775e-03	ci left: 3.070017e-01	ci right 3.082912e-01	k: 606063	n:1970000
KS ci ratio: 4.202587e-01	ci left: 3.491837e-05	ci right 5.391307e-05	k: 86	n:1970000
NEB   1970000 perm   2228 sec   (884 perm/sec)   p_kst 4.365482e-05   p_cons 3.076462e-01   p_joint 4.365482e-05

Joint ci ratio: 4.086787e-01	ci left: 3.700396e-05	ci right 5.642790e-05	k: 91	n:1980000
Cons ci ratio: 4.178812e-03	ci left: 3.070410e-01	ci right 3.083272e-01	k: 609214	n:1980000
KS ci ratio: 4.086787e-01	ci left: 3.700396e-05	ci right 5.642790e-05	k: 91	n:1980000
NEB   1980000 perm   2247 sec   (881 perm/sec)   p_kst 4.595960e-05   p_cons 3.076838e-01   p_joint 4.595960e-05

Joint ci ratio: 4.086787e-01	ci left: 3.681801e-05	ci right 5.614435e-05	k: 91	n:1990000
Cons ci ratio: 4.168535e-03	ci left: 3.070186e-01	ci right 3.083016e-01	k: 612243	n:1990000
KS ci ratio: 4.086787e-01	ci left: 3.681801e-05	ci right 5.614435e-05	k: 91	n:1990000
NEB   1990000 perm   2265 sec   (878 perm/sec)   p_kst 4.572864e-05   p_cons 3.076598e-01   p_joint 4.572864e-05

Joint ci ratio: 4.086787e-01	ci left: 3.663391e-05	ci right 5.586363e-05	k: 91	n:2000000
Cons ci ratio: 4.157732e-03	ci left: 3.070579e-01	ci right 3.083377e-01	k: 615395	n:2000000
KS ci ratio: 4.086787e-01	ci left: 3.663391e-05	ci right 5.586363e-05	k: 91	n:2000000
NEB   2000000 perm   2284 sec   (876 perm/sec)   p_kst 4.550000e-05   p_cons 3.076975e-01   p_joint 4.550000e-05

Joint ci ratio: 4.043076e-01	ci left: 3.734493e-05	ci right 5.668194e-05	k: 93	n:2010000
Cons ci ratio: 4.147096e-03	ci left: 3.070883e-01	ci right 3.083650e-01	k: 618530	n:2010000
KS ci ratio: 4.043076e-01	ci left: 3.734493e-05	ci right 5.668194e-05	k: 93	n:2010000
NEB   2010000 perm   2304 sec   (873 perm/sec)   p_kst 4.626866e-05   p_cons 3.077264e-01   p_joint 4.626866e-05

Joint ci ratio: 4.043076e-01	ci left: 3.716006e-05	ci right 5.640133e-05	k: 93	n:2020000
Cons ci ratio: 4.136862e-03	ci left: 3.070853e-01	ci right 3.083588e-01	k: 621598	n:2020000
KS ci ratio: 4.043076e-01	ci left: 3.716006e-05	ci right 5.640133e-05	k: 93	n:2020000
NEB   2020000 perm   2323 sec   (870 perm/sec)   p_kst 4.603960e-05   p_cons 3.077218e-01   p_joint 4.603960e-05

Joint ci ratio: 4.043077e-01	ci left: 3.697700e-05	ci right 5.612350e-05	k: 93	n:2030000
Cons ci ratio: 4.126810e-03	ci left: 3.070715e-01	ci right 3.083418e-01	k: 624644	n:2030000
KS ci ratio: 4.043077e-01	ci left: 3.697700e-05	ci right 5.612350e-05	k: 93	n:2030000
NEB   2030000 perm   2342 sec   (867 perm/sec)   p_kst 4.581281e-05   p_cons 3.077064e-01   p_joint 4.581281e-05

Joint ci ratio: 4.021741e-01	ci left: 3.723622e-05	ci right 5.638804e-05	k: 94	n:2040000
Cons ci ratio: 4.116413e-03	ci left: 3.071010e-01	ci right 3.083682e-01	k: 627778	n:2040000
KS ci ratio: 4.021741e-01	ci left: 3.723622e-05	ci right 5.638804e-05	k: 94	n:2040000
NEB   2040000 perm   2361 sec   (864 perm/sec)   p_kst 4.607843e-05   p_cons 3.077343e-01   p_joint 4.607843e-05

Joint ci ratio: 4.000739e-01	ci left: 3.749317e-05	ci right 5.664974e-05	k: 95	n:2050000
Cons ci ratio: 4.106296e-03	ci left: 3.071092e-01	ci right 3.083733e-01	k: 630869	n:2050000
KS ci ratio: 4.000739e-01	ci left: 3.749317e-05	ci right 5.664974e-05	k: 95	n:2050000
NEB   2050000 perm   2380 sec   (861 perm/sec)   p_kst 4.634146e-05   p_cons 3.077410e-01   p_joint 4.634146e-05

Joint ci ratio: 3.980062e-01	ci left: 3.774788e-05	ci right 5.690865e-05	k: 96	n:2060000
Cons ci ratio: 4.096268e-03	ci left: 3.071158e-01	ci right 3.083769e-01	k: 633957	n:2060000
KS ci ratio: 3.980062e-01	ci left: 3.774788e-05	ci right 5.690865e-05	k: 96	n:2060000
NEB   2060000 perm   2399 sec   (859 perm/sec)   p_kst 4.660194e-05   p_cons 3.077461e-01   p_joint 4.660194e-05

Joint ci ratio: 3.939653e-01	ci left: 3.843549e-05	ci right 5.769565e-05	k: 98	n:2070000
Cons ci ratio: 4.086266e-03	ci left: 3.071273e-01	ci right 3.083853e-01	k: 637055	n:2070000
KS ci ratio: 3.939653e-01	ci left: 3.843549e-05	ci right 5.769565e-05	k: 98	n:2070000
NEB   2070000 perm   2418 sec   (856 perm/sec)   p_kst 4.734300e-05   p_cons 3.077560e-01   p_joint 4.734300e-05

Joint ci ratio: 3.939654e-01	ci left: 3.825071e-05	ci right 5.741827e-05	k: 98	n:2080000
Cons ci ratio: 4.076416e-03	ci left: 3.071305e-01	ci right 3.083855e-01	k: 640136	n:2080000
KS ci ratio: 3.939654e-01	ci left: 3.825071e-05	ci right 5.741827e-05	k: 98	n:2080000
NEB   2080000 perm   2437 sec   (853 perm/sec)   p_kst 4.711538e-05   p_cons 3.077577e-01   p_joint 4.711538e-05

Joint ci ratio: 3.939654e-01	ci left: 3.806769e-05	ci right 5.714354e-05	k: 98	n:2090000
Cons ci ratio: 4.066673e-03	ci left: 3.071298e-01	ci right 3.083818e-01	k: 643209	n:2090000
KS ci ratio: 3.939654e-01	ci left: 3.806769e-05	ci right 5.714354e-05	k: 98	n:2090000
NEB   2090000 perm   2456 sec   (851 perm/sec)   p_kst 4.688995e-05   p_cons 3.077555e-01   p_joint 4.688995e-05

Joint ci ratio: 3.939654e-01	ci left: 3.788641e-05	ci right 5.687143e-05	k: 98	n:2100000
Cons ci ratio: 4.057004e-03	ci left: 3.071286e-01	ci right 3.083776e-01	k: 646281	n:2100000
KS ci ratio: 3.939654e-01	ci left: 3.788641e-05	ci right 5.687143e-05	k: 98	n:2100000
NEB   2100000 perm   2476 sec   (848 perm/sec)   p_kst 4.666667e-05   p_cons 3.077529e-01   p_joint 4.666667e-05

Joint ci ratio: 3.939655e-01	ci left: 3.770686e-05	ci right 5.660190e-05	k: 98	n:2110000
Cons ci ratio: 4.047607e-03	ci left: 3.071062e-01	ci right 3.083522e-01	k: 649308	n:2110000
KS ci ratio: 3.939655e-01	ci left: 3.770686e-05	ci right 5.660190e-05	k: 98	n:2110000
NEB   2110000 perm   2495 sec   (846 perm/sec)   p_kst 4.644550e-05   p_cons 3.077289e-01   p_joint 4.644550e-05

Joint ci ratio: 3.919907e-01	ci left: 3.795408e-05	ci right 5.685299e-05	k: 99	n:2120000
Cons ci ratio: 4.038243e-03	ci left: 3.070872e-01	ci right 3.083303e-01	k: 652342	n:2120000
KS ci ratio: 3.919907e-01	ci left: 3.795408e-05	ci right 5.685299e-05	k: 99	n:2120000
NEB   2120000 perm   2515 sec   (843 perm/sec)   p_kst 4.669811e-05   p_cons 3.077085e-01   p_joint 4.669811e-05

Joint ci ratio: 3.919907e-01	ci left: 3.777589e-05	ci right 5.658607e-05	k: 99	n:2130000
Cons ci ratio: 4.028597e-03	ci left: 3.071051e-01	ci right 3.083452e-01	k: 655454	n:2130000
KS ci ratio: 3.919907e-01	ci left: 3.777589e-05	ci right 5.658607e-05	k: 99	n:2130000
NEB   2130000 perm   2534 sec   (840 perm/sec)   p_kst 4.647887e-05   p_cons 3.077249e-01   p_joint 4.647887e-05

Joint ci ratio: 3.900453e-01	ci left: 3.802071e-05	ci right 5.683466e-05	k: 100	n:2140000
Cons ci ratio: 4.018884e-03	ci left: 3.071372e-01	ci right 3.083745e-01	k: 658597	n:2140000
KS ci ratio: 3.900453e-01	ci left: 3.802071e-05	ci right 5.683466e-05	k: 100	n:2140000
NEB   2140000 perm   2554 sec   (838 perm/sec)   p_kst 4.672897e-05   p_cons 3.077556e-01   p_joint 4.672897e-05

Joint ci ratio: 3.900453e-01	ci left: 3.784387e-05	ci right 5.657032e-05	k: 100	n:2150000
Cons ci ratio: 4.009590e-03	ci left: 3.071319e-01	ci right 3.083663e-01	k: 661660	n:2150000
KS ci ratio: 3.900453e-01	ci left: 3.784387e-05	ci right 5.657032e-05	k: 100	n:2150000
NEB   2150000 perm   2574 sec   (835 perm/sec)   p_kst 4.651163e-05   p_cons 3.077488e-01   p_joint 4.651163e-05

Joint ci ratio: 3.900454e-01	ci left: 3.766867e-05	ci right 5.630842e-05	k: 100	n:2160000
Cons ci ratio: 4.000652e-03	ci left: 3.070956e-01	ci right 3.083271e-01	k: 664656	n:2160000
KS ci ratio: 3.900454e-01	ci left: 3.766867e-05	ci right 5.630842e-05	k: 100	n:2160000
NEB   2160000 perm   2594 sec   (833 perm/sec)   p_kst 4.629630e-05   p_cons 3.077111e-01   p_joint 4.629630e-05

Joint ci ratio: 3.881286e-01	ci left: 3.791083e-05	ci right 5.655463e-05	k: 101	n:2170000
Cons ci ratio: 3.991027e-03	ci left: 3.071394e-01	ci right 3.083681e-01	k: 667825	n:2170000
KS ci ratio: 3.881286e-01	ci left: 3.791083e-05	ci right 5.655463e-05	k: 101	n:2170000
NEB   2170000 perm   2614 sec   (830 perm/sec)   p_kst 4.654378e-05   p_cons 3.077535e-01   p_joint 4.654378e-05

Joint ci ratio: 3.843784e-01	ci left: 3.856527e-05	ci right 5.730130e-05	k: 103	n:2180000
Cons ci ratio: 3.981719e-03	ci left: 3.071561e-01	ci right 3.083820e-01	k: 670936	n:2180000
KS ci ratio: 3.843784e-01	ci left: 3.856527e-05	ci right 5.730130e-05	k: 103	n:2180000
NEB   2180000 perm   2634 sec   (828 perm/sec)   p_kst 4.724771e-05   p_cons 3.077688e-01   p_joint 4.724771e-05

Joint ci ratio: 3.843784e-01	ci left: 3.838917e-05	ci right 5.703965e-05	k: 103	n:2190000
Cons ci ratio: 3.972387e-03	ci left: 3.071823e-01	ci right 3.084054e-01	k: 674068	n:2190000
KS ci ratio: 3.843784e-01	ci left: 3.838917e-05	ci right 5.703965e-05	k: 103	n:2190000
NEB   2190000 perm   2654 sec   (825 perm/sec)   p_kst 4.703196e-05   p_cons 3.077936e-01   p_joint 4.703196e-05

Joint ci ratio: 3.843785e-01	ci left: 3.821467e-05	ci right 5.678038e-05	k: 103	n:2200000
Cons ci ratio: 3.963441e-03	ci left: 3.071737e-01	ci right 3.083940e-01	k: 677124	n:2200000
KS ci ratio: 3.843785e-01	ci left: 3.821467e-05	ci right 5.678038e-05	k: 103	n:2200000
NEB   2200000 perm   2674 sec   (823 perm/sec)   p_kst 4.681818e-05   p_cons 3.077836e-01   p_joint 4.681818e-05

Joint ci ratio: 3.843785e-01	ci left: 3.804176e-05	ci right 5.652346e-05	k: 103	n:2210000
Cons ci ratio: 3.954635e-03	ci left: 3.071566e-01	ci right 3.083742e-01	k: 680161	n:2210000
KS ci ratio: 3.843785e-01	ci left: 3.804176e-05	ci right 5.652346e-05	k: 103	n:2210000
NEB   2210000 perm   2695 sec   (820 perm/sec)   p_kst 4.660633e-05   p_cons 3.077652e-01   p_joint 4.660633e-05

Joint ci ratio: 3.843785e-01	ci left: 3.787040e-05	ci right 5.626885e-05	k: 103	n:2220000
Cons ci ratio: 3.945997e-03	ci left: 3.071280e-01	ci right 3.083428e-01	k: 683172	n:2220000
KS ci ratio: 3.843785e-01	ci left: 3.787040e-05	ci right 5.626885e-05	k: 103	n:2220000
NEB   2220000 perm   2715 sec   (818 perm/sec)   p_kst 4.639640e-05   p_cons 3.077351e-01   p_joint 4.639640e-05

Joint ci ratio: 3.843786e-01	ci left: 3.770057e-05	ci right 5.601652e-05	k: 103	n:2230000
Cons ci ratio: 3.937083e-03	ci left: 3.071355e-01	ci right 3.083475e-01	k: 686263	n:2230000
KS ci ratio: 3.843786e-01	ci left: 3.770057e-05	ci right 5.601652e-05	k: 103	n:2230000
NEB   2230000 perm   2735 sec   (815 perm/sec)   p_kst 4.618834e-05   p_cons 3.077413e-01   p_joint 4.618834e-05

Joint ci ratio: 3.789516e-01	ci left: 3.874307e-05	ci right 5.723362e-05	k: 106	n:2240000
Cons ci ratio: 3.928398e-03	ci left: 3.071246e-01	ci right 3.083339e-01	k: 689313	n:2240000
KS ci ratio: 3.789516e-01	ci left: 3.874307e-05	ci right 5.723362e-05	k: 106	n:2240000
NEB   2240000 perm   2755 sec   (813 perm/sec)   p_kst 4.732143e-05   p_cons 3.077290e-01   p_joint 4.732143e-05

Joint ci ratio: 3.789516e-01	ci left: 3.857087e-05	ci right 5.697925e-05	k: 106	n:2250000
Cons ci ratio: 3.919929e-03	ci left: 3.070965e-01	ci right 3.083031e-01	k: 692324	n:2250000
KS ci ratio: 3.789516e-01	ci left: 3.857087e-05	ci right 5.697925e-05	k: 106	n:2250000
NEB   2250000 perm   2775 sec   (811 perm/sec)   p_kst 4.711111e-05   p_cons 3.076996e-01   p_joint 4.711111e-05

Joint ci ratio: 3.771931e-01	ci left: 3.880064e-05	ci right 5.721146e-05	k: 107	n:2260000
Cons ci ratio: 3.911174e-03	ci left: 3.071058e-01	ci right 3.083097e-01	k: 695419	n:2260000
KS ci ratio: 3.771931e-01	ci left: 3.880064e-05	ci right 5.721146e-05	k: 107	n:2260000
NEB   2260000 perm   2797 sec   (808 perm/sec)   p_kst 4.734513e-05   p_cons 3.077075e-01   p_joint 4.734513e-05

Joint ci ratio: 3.771931e-01	ci left: 3.862971e-05	ci right 5.695943e-05	k: 107	n:2270000
Cons ci ratio: 3.902812e-03	ci left: 3.070785e-01	ci right 3.082797e-01	k: 698431	n:2270000
KS ci ratio: 3.771931e-01	ci left: 3.862971e-05	ci right 5.695943e-05	k: 107	n:2270000
NEB   2270000 perm   2817 sec   (806 perm/sec)   p_kst 4.713656e-05   p_cons 3.076789e-01   p_joint 4.713656e-05

Joint ci ratio: 3.771932e-01	ci left: 3.846028e-05	ci right 5.670961e-05	k: 107	n:2280000
Cons ci ratio: 3.894071e-03	ci left: 3.070987e-01	ci right 3.082974e-01	k: 701551	n:2280000
KS ci ratio: 3.771932e-01	ci left: 3.846028e-05	ci right 5.670961e-05	k: 107	n:2280000
NEB   2280000 perm   2838 sec   (803 perm/sec)   p_kst 4.692982e-05   p_cons 3.076978e-01   p_joint 4.692982e-05

Joint ci ratio: 3.771932e-01	ci left: 3.829233e-05	ci right 5.646197e-05	k: 107	n:2290000
Cons ci ratio: 3.885499e-03	ci left: 3.071066e-01	ci right 3.083026e-01	k: 704643	n:2290000
KS ci ratio: 3.771932e-01	ci left: 3.829233e-05	ci right 5.646197e-05	k: 107	n:2290000
NEB   2290000 perm   2859 sec   (801 perm/sec)   p_kst 4.672489e-05   p_cons 3.077044e-01   p_joint 4.672489e-05

Joint ci ratio: 3.771932e-01	ci left: 3.812584e-05	ci right 5.621649e-05	k: 107	n:2300000
Cons ci ratio: 3.876905e-03	ci left: 3.071231e-01	ci right 3.083165e-01	k: 707755	n:2300000
KS ci ratio: 3.771932e-01	ci left: 3.812584e-05	ci right 5.621649e-05	k: 107	n:2300000
NEB   2300000 perm   2880 sec   (799 perm/sec)   p_kst 4.652174e-05   p_cons 3.077196e-01   p_joint 4.652174e-05

Joint ci ratio: 3.754590e-01	ci left: 3.835275e-05	ci right 5.644679e-05	k: 108	n:2310000
Cons ci ratio: 3.868863e-03	ci left: 3.070849e-01	ci right 3.082757e-01	k: 710741	n:2310000
KS ci ratio: 3.754590e-01	ci left: 3.835275e-05	ci right 5.644679e-05	k: 108	n:2310000
NEB   2310000 perm   2901 sec   (796 perm/sec)   p_kst 4.675325e-05   p_cons 3.076801e-01   p_joint 4.675325e-05

Joint ci ratio: 3.754590e-01	ci left: 3.818743e-05	ci right 5.620348e-05	k: 108	n:2320000
Cons ci ratio: 3.860398e-03	ci left: 3.070992e-01	ci right 3.082875e-01	k: 713848	n:2320000
KS ci ratio: 3.754590e-01	ci left: 3.818743e-05	ci right 5.620348e-05	k: 108	n:2320000
NEB   2320000 perm   2923 sec   (794 perm/sec)   p_kst 4.655172e-05   p_cons 3.076931e-01   p_joint 4.655172e-05

Joint ci ratio: 3.754590e-01	ci left: 3.802354e-05	ci right 5.596227e-05	k: 108	n:2330000
Cons ci ratio: 3.852093e-03	ci left: 3.071018e-01	ci right 3.082875e-01	k: 716928	n:2330000
KS ci ratio: 3.754590e-01	ci left: 3.802354e-05	ci right 5.596227e-05	k: 108	n:2330000
NEB   2330000 perm   2943 sec   (792 perm/sec)   p_kst 4.635193e-05   p_cons 3.076944e-01   p_joint 4.635193e-05

Joint ci ratio: 3.737485e-01	ci left: 3.824816e-05	ci right 5.619052e-05	k: 109	n:2340000
Cons ci ratio: 3.844104e-03	ci left: 3.070754e-01	ci right 3.082585e-01	k: 719940	n:2340000
KS ci ratio: 3.737485e-01	ci left: 3.824816e-05	ci right 5.619052e-05	k: 109	n:2340000
NEB   2340000 perm   2964 sec   (789 perm/sec)   p_kst 4.658120e-05   p_cons 3.076667e-01   p_joint 4.658120e-05

Joint ci ratio: 3.737485e-01	ci left: 3.808540e-05	ci right 5.595141e-05	k: 109	n:2350000
Cons ci ratio: 3.835777e-03	ci left: 3.070921e-01	ci right 3.082727e-01	k: 723053	n:2350000
KS ci ratio: 3.737485e-01	ci left: 3.808540e-05	ci right 5.595141e-05	k: 109	n:2350000
NEB   2350000 perm   2985 sec   (787 perm/sec)   p_kst 4.638298e-05   p_cons 3.076821e-01   p_joint 4.638298e-05

Joint ci ratio: 3.737485e-01	ci left: 3.792402e-05	ci right 5.571433e-05	k: 109	n:2360000
Cons ci ratio: 3.827725e-03	ci left: 3.070841e-01	ci right 3.082622e-01	k: 726108	n:2360000
KS ci ratio: 3.737485e-01	ci left: 3.792402e-05	ci right 5.571433e-05	k: 109	n:2360000
NEB   2360000 perm   3007 sec   (785 perm/sec)   p_kst 4.618644e-05   p_cons 3.076729e-01   p_joint 4.618644e-05

Joint ci ratio: 3.737486e-01	ci left: 3.776400e-05	ci right 5.547925e-05	k: 109	n:2370000
Cons ci ratio: 3.819961e-03	ci left: 3.070496e-01	ci right 3.082251e-01	k: 729100	n:2370000
KS ci ratio: 3.737486e-01	ci left: 3.776400e-05	ci right 5.547925e-05	k: 109	n:2370000
NEB   2370000 perm   3029 sec   (783 perm/sec)   p_kst 4.599156e-05   p_cons 3.076371e-01   p_joint 4.599156e-05

Joint ci ratio: 3.720612e-01	ci left: 3.798612e-05	ci right 5.570551e-05	k: 110	n:2380000
Cons ci ratio: 3.811884e-03	ci left: 3.070557e-01	ci right 3.082288e-01	k: 732188	n:2380000
KS ci ratio: 3.720612e-01	ci left: 3.798612e-05	ci right 5.570551e-05	k: 110	n:2380000
NEB   2380000 perm   3050 sec   (780 perm/sec)   p_kst 4.621849e-05   p_cons 3.076420e-01   p_joint 4.621849e-05

Joint ci ratio: 3.687538e-01	ci left: 3.858612e-05	ci right 5.638680e-05	k: 112	n:2390000
Cons ci ratio: 3.803981e-03	ci left: 3.070480e-01	ci right 3.082186e-01	k: 735243	n:2390000
KS ci ratio: 3.687538e-01	ci left: 3.858612e-05	ci right 5.638680e-05	k: 112	n:2390000
NEB   2390000 perm   3071 sec   (778 perm/sec)   p_kst 4.686192e-05   p_cons 3.076331e-01   p_joint 4.686192e-05

Joint ci ratio: 3.671328e-01	ci left: 3.880348e-05	ci right 5.660688e-05	k: 113	n:2400000
Cons ci ratio: 3.795800e-03	ci left: 3.070770e-01	ci right 3.082452e-01	k: 738386	n:2400000
KS ci ratio: 3.671328e-01	ci left: 3.880348e-05	ci right 5.660688e-05	k: 113	n:2400000
NEB   2400000 perm   3093 sec   (776 perm/sec)   p_kst 4.708333e-05   p_cons 3.076608e-01   p_joint 4.708333e-05

Joint ci ratio: 3.623953e-01	ci left: 3.977321e-05	ci right 5.773041e-05	k: 116	n:2410000
Cons ci ratio: 3.787731e-03	ci left: 3.070991e-01	ci right 3.082649e-01	k: 741513	n:2410000
KS ci ratio: 3.623953e-01	ci left: 3.977321e-05	ci right 5.773041e-05	k: 116	n:2410000
NEB   2410000 perm   3115 sec   (774 perm/sec)   p_kst 4.813278e-05   p_cons 3.076817e-01   p_joint 4.813278e-05

Joint ci ratio: 3.608564e-01	ci left: 3.998453e-05	ci right 5.794246e-05	k: 117	n:2420000
Cons ci ratio: 3.779882e-03	ci left: 3.071020e-01	ci right 3.082654e-01	k: 744594	n:2420000
KS ci ratio: 3.608564e-01	ci left: 3.998453e-05	ci right 5.794246e-05	k: 117	n:2420000
NEB   2420000 perm   3137 sec   (772 perm/sec)   p_kst 4.834711e-05   p_cons 3.076835e-01   p_joint 4.834711e-05

Joint ci ratio: 3.593369e-01	ci left: 4.019428e-05	ci right 5.815261e-05	k: 118	n:2430000
Cons ci ratio: 3.772026e-03	ci left: 3.071111e-01	ci right 3.082721e-01	k: 747690	n:2430000
KS ci ratio: 3.593369e-01	ci left: 4.019428e-05	ci right 5.815261e-05	k: 118	n:2430000
NEB   2430000 perm   3158 sec   (769 perm/sec)   p_kst 4.855967e-05   p_cons 3.076914e-01   p_joint 4.855967e-05

Joint ci ratio: 3.593370e-01	ci left: 4.002955e-05	ci right 5.791428e-05	k: 118	n:2440000
Cons ci ratio: 3.763995e-03	ci left: 3.071455e-01	ci right 3.083041e-01	k: 750848	n:2440000
KS ci ratio: 3.593370e-01	ci left: 4.002955e-05	ci right 5.791428e-05	k: 118	n:2440000
NEB   2440000 perm   3181 sec   (767 perm/sec)   p_kst 4.836066e-05   p_cons 3.077246e-01   p_joint 4.836066e-05

Joint ci ratio: 3.593370e-01	ci left: 3.986616e-05	ci right 5.767790e-05	k: 118	n:2450000
Cons ci ratio: 3.756404e-03	ci left: 3.071356e-01	ci right 3.082918e-01	k: 753898	n:2450000
KS ci ratio: 3.593370e-01	ci left: 3.986616e-05	ci right 5.767790e-05	k: 118	n:2450000
NEB   2450000 perm   3203 sec   (765 perm/sec)   p_kst 4.816327e-05   p_cons 3.077135e-01   p_joint 4.816327e-05

Joint ci ratio: 3.593370e-01	ci left: 3.970411e-05	ci right 5.744344e-05	k: 118	n:2460000
Cons ci ratio: 3.748722e-03	ci left: 3.071411e-01	ci right 3.082951e-01	k: 756986	n:2460000
KS ci ratio: 3.593370e-01	ci left: 3.970411e-05	ci right 5.744344e-05	k: 118	n:2460000
NEB   2460000 perm   3225 sec   (763 perm/sec)   p_kst 4.796748e-05   p_cons 3.077179e-01   p_joint 4.796748e-05

Joint ci ratio: 3.593371e-01	ci left: 3.954336e-05	ci right 5.721087e-05	k: 118	n:2470000
Cons ci ratio: 3.741280e-03	ci left: 3.071248e-01	ci right 3.082764e-01	k: 760020	n:2470000
KS ci ratio: 3.593371e-01	ci left: 3.954336e-05	ci right 5.721087e-05	k: 118	n:2470000
NEB   2470000 perm   3247 sec   (761 perm/sec)   p_kst 4.777328e-05   p_cons 3.077004e-01   p_joint 4.777328e-05

Joint ci ratio: 3.593371e-01	ci left: 3.938391e-05	ci right 5.698019e-05	k: 118	n:2480000
Cons ci ratio: 3.733729e-03	ci left: 3.071260e-01	ci right 3.082753e-01	k: 763097	n:2480000
KS ci ratio: 3.593371e-01	ci left: 3.938391e-05	ci right 5.698019e-05	k: 118	n:2480000
NEB   2480000 perm   3269 sec   (759 perm/sec)   p_kst 4.758065e-05   p_cons 3.077004e-01   p_joint 4.758065e-05

Joint ci ratio: 3.593372e-01	ci left: 3.922574e-05	ci right 5.675135e-05	k: 118	n:2490000
Cons ci ratio: 3.726186e-03	ci left: 3.071316e-01	ci right 3.082785e-01	k: 766185	n:2490000
KS ci ratio: 3.593372e-01	ci left: 3.922574e-05	ci right 5.675135e-05	k: 118	n:2490000
NEB   2490000 perm   3291 sec   (757 perm/sec)   p_kst 4.738956e-05   p_cons 3.077048e-01   p_joint 4.738956e-05

Joint ci ratio: 3.593372e-01	ci left: 3.906884e-05	ci right 5.652435e-05	k: 118	n:2500000
Cons ci ratio: 3.718904e-03	ci left: 3.071123e-01	ci right 3.082569e-01	k: 769211	n:2500000
KS ci ratio: 3.593372e-01	ci left: 3.906884e-05	ci right 5.652435e-05	k: 118	n:2500000
NEB   2500000 perm   3314 sec   (754 perm/sec)   p_kst 4.720000e-05   p_cons 3.076844e-01   p_joint 4.720000e-05

Joint ci ratio: 3.578368e-01	ci left: 3.927570e-05	ci right 5.673330e-05	k: 119	n:2510000
Cons ci ratio: 3.711391e-03	ci left: 3.071247e-01	ci right 3.082670e-01	k: 772316	n:2510000
KS ci ratio: 3.578368e-01	ci left: 3.927570e-05	ci right 5.673330e-05	k: 119	n:2510000
NEB   2510000 perm   3336 sec   (752 perm/sec)   p_kst 4.741036e-05   p_cons 3.076956e-01   p_joint 4.741036e-05

Joint ci ratio: 3.534458e-01	ci left: 4.020398e-05	ci right 5.780456e-05	k: 122	n:2520000
Cons ci ratio: 3.703885e-03	ci left: 3.071413e-01	ci right 3.082814e-01	k: 775432	n:2520000
KS ci ratio: 3.534458e-01	ci left: 4.020398e-05	ci right 5.780456e-05	k: 122	n:2520000
NEB   2520000 perm   3358 sec   (750 perm/sec)   p_kst 4.841270e-05   p_cons 3.077111e-01   p_joint 4.841270e-05

Joint ci ratio: 3.534458e-01	ci left: 4.004507e-05	ci right 5.757608e-05	k: 122	n:2530000
Cons ci ratio: 3.696527e-03	ci left: 3.071459e-01	ci right 3.082838e-01	k: 778518	n:2530000
KS ci ratio: 3.534458e-01	ci left: 4.004507e-05	ci right 5.757608e-05	k: 122	n:2530000
NEB   2530000 perm   3380 sec   (749 perm/sec)   p_kst 4.822134e-05   p_cons 3.077146e-01   p_joint 4.822134e-05

Joint ci ratio: 3.506068e-01	ci left: 4.060519e-05	ci right 5.820615e-05	k: 124	n:2540000
Cons ci ratio: 3.689554e-03	ci left: 3.071112e-01	ci right 3.082467e-01	k: 781504	n:2540000
KS ci ratio: 3.506068e-01	ci left: 4.060519e-05	ci right 5.820615e-05	k: 124	n:2540000
NEB   2540000 perm   3403 sec   (746 perm/sec)   p_kst 4.881890e-05   p_cons 3.076787e-01   p_joint 4.881890e-05

Joint ci ratio: 3.464736e-01	ci left: 4.151945e-05	ci right 5.925694e-05	k: 127	n:2550000
Cons ci ratio: 3.682312e-03	ci left: 3.071124e-01	ci right 3.082457e-01	k: 784581	n:2550000
KS ci ratio: 3.464736e-01	ci left: 4.151945e-05	ci right 5.925694e-05	k: 127	n:2550000
NEB   2550000 perm   3425 sec   (744 perm/sec)   p_kst 4.980392e-05   p_cons 3.076788e-01   p_joint 4.980392e-05

Joint ci ratio: 3.451280e-01	ci left: 4.171397e-05	ci right 5.944988e-05	k: 128	n:2560000
Cons ci ratio: 3.674967e-03	ci left: 3.071303e-01	ci right 3.082615e-01	k: 787701	n:2560000
KS ci ratio: 3.451280e-01	ci left: 4.171397e-05	ci right 5.944988e-05	k: 128	n:2560000
NEB   2560000 perm   3448 sec   (742 perm/sec)   p_kst 5.000000e-05   p_cons 3.076957e-01   p_joint 5.000000e-05

Joint ci ratio: 3.451280e-01	ci left: 4.155166e-05	ci right 5.921856e-05	k: 128	n:2570000
Cons ci ratio: 3.668058e-03	ci left: 3.071027e-01	ci right 3.082316e-01	k: 790704	n:2570000
KS ci ratio: 3.451280e-01	ci left: 4.155166e-05	ci right 5.921856e-05	k: 128	n:2570000
NEB   2570000 perm   3470 sec   (741 perm/sec)   p_kst 4.980545e-05   p_cons 3.076669e-01   p_joint 4.980545e-05

Joint ci ratio: 3.437980e-01	ci left: 4.174467e-05	ci right 5.941003e-05	k: 129	n:2580000
Cons ci ratio: 3.660932e-03	ci left: 3.071051e-01	ci right 3.082318e-01	k: 793784	n:2580000
KS ci ratio: 3.437980e-01	ci left: 4.174467e-05	ci right 5.941003e-05	k: 129	n:2580000
NEB   2580000 perm   3493 sec   (739 perm/sec)   p_kst 5.000000e-05   p_cons 3.076682e-01   p_joint 5.000000e-05

Joint ci ratio: 3.437980e-01	ci left: 4.158349e-05	ci right 5.918065e-05	k: 129	n:2590000
Cons ci ratio: 3.653810e-03	ci left: 3.071117e-01	ci right 3.082362e-01	k: 796875	n:2590000
KS ci ratio: 3.437980e-01	ci left: 4.158349e-05	ci right 5.918065e-05	k: 129	n:2590000
NEB   2590000 perm   3516 sec   (737 perm/sec)   p_kst 4.980695e-05   p_cons 3.076737e-01   p_joint 4.980695e-05

Joint ci ratio: 3.437981e-01	ci left: 4.142356e-05	ci right 5.895303e-05	k: 129	n:2600000
Cons ci ratio: 3.646973e-03	ci left: 3.070898e-01	ci right 3.082122e-01	k: 799892	n:2600000
KS ci ratio: 3.437981e-01	ci left: 4.142356e-05	ci right 5.895303e-05	k: 129	n:2600000
NEB   2600000 perm   3539 sec   (735 perm/sec)   p_kst 4.961538e-05   p_cons 3.076508e-01   p_joint 4.961538e-05

Joint ci ratio: 3.437981e-01	ci left: 4.126485e-05	ci right 5.872716e-05	k: 129	n:2610000
Cons ci ratio: 3.639926e-03	ci left: 3.070972e-01	ci right 3.082174e-01	k: 802985	n:2610000
KS ci ratio: 3.437981e-01	ci left: 4.126485e-05	ci right 5.872716e-05	k: 129	n:2610000
NEB   2610000 perm   3561 sec   (733 perm/sec)   p_kst 4.942529e-05   p_cons 3.076571e-01   p_joint 4.942529e-05

Joint ci ratio: 3.437981e-01	ci left: 4.110735e-05	ci right 5.850301e-05	k: 129	n:2620000
Cons ci ratio: 3.633050e-03	ci left: 3.070893e-01	ci right 3.082073e-01	k: 806038	n:2620000
KS ci ratio: 3.437981e-01	ci left: 4.110735e-05	ci right 5.850301e-05	k: 129	n:2620000
NEB   2620000 perm   3584 sec   (731 perm/sec)   p_kst 4.923664e-05   p_cons 3.076481e-01   p_joint 4.923664e-05

Joint ci ratio: 3.424834e-01	ci left: 4.129851e-05	ci right 5.869343e-05	k: 130	n:2630000
Cons ci ratio: 3.625992e-03	ci left: 3.071073e-01	ci right 3.082232e-01	k: 809159	n:2630000
KS ci ratio: 3.424834e-01	ci left: 4.129851e-05	ci right 5.869343e-05	k: 130	n:2630000
NEB   2630000 perm   3607 sec   (729 perm/sec)   p_kst 4.942966e-05   p_cons 3.076650e-01   p_joint 4.942966e-05

Joint ci ratio: 3.424834e-01	ci left: 4.114208e-05	ci right 5.847111e-05	k: 130	n:2640000
Cons ci ratio: 3.618985e-03	ci left: 3.071240e-01	ci right 3.082378e-01	k: 812277	n:2640000
KS ci ratio: 3.424834e-01	ci left: 4.114208e-05	ci right 5.847111e-05	k: 130	n:2640000
NEB   2640000 perm   3631 sec   (727 perm/sec)   p_kst 4.924242e-05   p_cons 3.076807e-01   p_joint 4.924242e-05

Joint ci ratio: 3.424835e-01	ci left: 4.098682e-05	ci right 5.825047e-05	k: 130	n:2650000
Cons ci ratio: 3.612195e-03	ci left: 3.071198e-01	ci right 3.082316e-01	k: 815340	n:2650000
KS ci ratio: 3.424835e-01	ci left: 4.098682e-05	ci right 5.825047e-05	k: 130	n:2650000
NEB   2650000 perm   3654 sec   (725 perm/sec)   p_kst 4.905660e-05   p_cons 3.076755e-01   p_joint 4.905660e-05

Joint ci ratio: 3.424835e-01	ci left: 4.083273e-05	ci right 5.803148e-05	k: 130	n:2660000
Cons ci ratio: 3.605213e-03	ci left: 3.071427e-01	ci right 3.082524e-01	k: 818475	n:2660000
KS ci ratio: 3.424835e-01	ci left: 4.083273e-05	ci right 5.803148e-05	k: 130	n:2660000
NEB   2660000 perm   3678 sec   (723 perm/sec)   p_kst 4.887218e-05   p_cons 3.076974e-01   p_joint 4.887218e-05

Joint ci ratio: 3.398986e-01	ci left: 4.136469e-05	ci right 5.862713e-05	k: 132	n:2670000
Cons ci ratio: 3.598168e-03	ci left: 3.071779e-01	ci right 3.082855e-01	k: 821643	n:2670000
KS ci ratio: 3.398986e-01	ci left: 4.136469e-05	ci right 5.862713e-05	k: 132	n:2670000
NEB   2670000 perm   3701 sec   (721 perm/sec)   p_kst 4.943820e-05   p_cons 3.077315e-01   p_joint 4.943820e-05

Joint ci ratio: 3.373713e-01	ci left: 4.189317e-05	ci right 5.921786e-05	k: 134	n:2680000
Cons ci ratio: 3.591210e-03	ci left: 3.072071e-01	ci right 3.083127e-01	k: 824796	n:2680000
KS ci ratio: 3.373713e-01	ci left: 4.189317e-05	ci right 5.921786e-05	k: 134	n:2680000
NEB   2680000 perm   3725 sec   (720 perm/sec)   p_kst 5.000000e-05   p_cons 3.077597e-01   p_joint 5.000000e-05

Joint ci ratio: 3.361287e-01	ci left: 4.207775e-05	ci right 5.940078e-05	k: 135	n:2690000
Cons ci ratio: 3.584550e-03	ci left: 3.072057e-01	ci right 3.083092e-01	k: 827867	n:2690000
KS ci ratio: 3.361287e-01	ci left: 4.207775e-05	ci right 5.940078e-05	k: 135	n:2690000
NEB   2690000 perm   3749 sec   (718 perm/sec)   p_kst 5.018587e-05   p_cons 3.077572e-01   p_joint 5.018587e-05

Joint ci ratio: 3.361287e-01	ci left: 4.192190e-05	ci right 5.918078e-05	k: 135	n:2700000
Cons ci ratio: 3.577811e-03	ci left: 3.072180e-01	ci right 3.083195e-01	k: 830975	n:2700000
KS ci ratio: 3.361287e-01	ci left: 4.192190e-05	ci right 5.918078e-05	k: 135	n:2700000
NEB   2700000 perm   3772 sec   (716 perm/sec)   p_kst 5.000000e-05   p_cons 3.077685e-01   p_joint 5.000000e-05

Joint ci ratio: 3.361287e-01	ci left: 4.176721e-05	ci right 5.896240e-05	k: 135	n:2710000
Cons ci ratio: 3.571141e-03	ci left: 3.072265e-01	ci right 3.083260e-01	k: 834073	n:2710000
KS ci ratio: 3.361287e-01	ci left: 4.176721e-05	ci right 5.896240e-05	k: 135	n:2710000
NEB   2710000 perm   3796 sec   (714 perm/sec)   p_kst 4.981550e-05   p_cons 3.077760e-01   p_joint 4.981550e-05

Joint ci ratio: 3.361288e-01	ci left: 4.161365e-05	ci right 5.874563e-05	k: 135	n:2720000
Cons ci ratio: 3.564720e-03	ci left: 3.072096e-01	ci right 3.083070e-01	k: 837102	n:2720000
KS ci ratio: 3.361288e-01	ci left: 4.161365e-05	ci right 5.874563e-05	k: 135	n:2720000
NEB   2720000 perm   3820 sec   (712 perm/sec)   p_kst 4.963235e-05   p_cons 3.077581e-01   p_joint 4.963235e-05

Joint ci ratio: 3.361288e-01	ci left: 4.146122e-05	ci right 5.853044e-05	k: 135	n:2730000
Cons ci ratio: 3.557994e-03	ci left: 3.072334e-01	ci right 3.083289e-01	k: 840242	n:2730000
KS ci ratio: 3.361288e-01	ci left: 4.146122e-05	ci right 5.853044e-05	k: 135	n:2730000
NEB   2730000 perm   3844 sec   (710 perm/sec)   p_kst 4.945055e-05   p_cons 3.077810e-01   p_joint 4.945055e-05

Joint ci ratio: 3.361288e-01	ci left: 4.130990e-05	ci right 5.831683e-05	k: 135	n:2740000
Cons ci ratio: 3.551626e-03	ci left: 3.072188e-01	ci right 3.083122e-01	k: 843277	n:2740000
KS ci ratio: 3.361288e-01	ci left: 4.130990e-05	ci right 5.831683e-05	k: 135	n:2740000
NEB   2740000 perm   3868 sec   (708 perm/sec)   p_kst 4.927007e-05   p_cons 3.077653e-01   p_joint 4.927007e-05

Joint ci ratio: 3.361289e-01	ci left: 4.115968e-05	ci right 5.810477e-05	k: 135	n:2750000
Cons ci ratio: 3.545280e-03	ci left: 3.072058e-01	ci right 3.082972e-01	k: 846316	n:2750000
KS ci ratio: 3.361289e-01	ci left: 4.115968e-05	ci right 5.810477e-05	k: 135	n:2750000
NEB   2750000 perm   3891 sec   (707 perm/sec)   p_kst 4.909091e-05   p_cons 3.077513e-01   p_joint 4.909091e-05

Joint ci ratio: 3.361289e-01	ci left: 4.101055e-05	ci right 5.789425e-05	k: 135	n:2760000
Cons ci ratio: 3.538558e-03	ci left: 3.072421e-01	ci right 3.083315e-01	k: 849491	n:2760000
KS ci ratio: 3.361289e-01	ci left: 4.101055e-05	ci right 5.789425e-05	k: 135	n:2760000
NEB   2760000 perm   3915 sec   (705 perm/sec)   p_kst 4.891304e-05   p_cons 3.077866e-01   p_joint 4.891304e-05

Joint ci ratio: 3.348999e-01	ci left: 4.119310e-05	ci right 5.807655e-05	k: 136	n:2770000
Cons ci ratio: 3.531874e-03	ci left: 3.072781e-01	ci right 3.083656e-01	k: 852666	n:2770000
KS ci ratio: 3.348999e-01	ci left: 4.119310e-05	ci right 5.807655e-05	k: 136	n:2770000
NEB   2770000 perm   3940 sec   (703 perm/sec)   p_kst 4.909747e-05   p_cons 3.078217e-01   p_joint 4.909747e-05

Joint ci ratio: 3.324817e-01	ci left: 4.170408e-05	ci right 5.864712e-05	k: 138	n:2780000
Cons ci ratio: 3.525785e-03	ci left: 3.072466e-01	ci right 3.083322e-01	k: 855654	n:2780000
KS ci ratio: 3.324817e-01	ci left: 4.170408e-05	ci right 5.864712e-05	k: 138	n:2780000
NEB   2780000 perm   3965 sec   (701 perm/sec)   p_kst 4.964029e-05   p_cons 3.077892e-01   p_joint 4.964029e-05

Joint ci ratio: 3.324817e-01	ci left: 4.155461e-05	ci right 5.843692e-05	k: 138	n:2790000
Cons ci ratio: 3.519475e-03	ci left: 3.072459e-01	ci right 3.083294e-01	k: 858727	n:2790000
KS ci ratio: 3.324817e-01	ci left: 4.155461e-05	ci right 5.843692e-05	k: 138	n:2790000
NEB   2790000 perm   3989 sec   (699 perm/sec)   p_kst 4.946237e-05   p_cons 3.077875e-01   p_joint 4.946237e-05

Joint ci ratio: 3.301152e-01	ci left: 4.206108e-05	ci right 5.900170e-05	k: 140	n:2800000
Cons ci ratio: 3.513043e-03	ci left: 3.072640e-01	ci right 3.083457e-01	k: 861853	n:2800000
KS ci ratio: 3.301152e-01	ci left: 4.206108e-05	ci right 5.900170e-05	k: 140	n:2800000
NEB   2800000 perm   4013 sec   (698 perm/sec)   p_kst 5.000000e-05   p_cons 3.078046e-01   p_joint 5.000000e-05

Joint ci ratio: 3.289507e-01	ci left: 4.223783e-05	ci right 5.917693e-05	k: 141	n:2810000
Cons ci ratio: 3.506983e-03	ci left: 3.072411e-01	ci right 3.083208e-01	k: 864864	n:2810000
KS ci ratio: 3.289507e-01	ci left: 4.223783e-05	ci right 5.917693e-05	k: 141	n:2810000
NEB   2810000 perm   4037 sec   (696 perm/sec)   p_kst 5.017794e-05   p_cons 3.077808e-01   p_joint 5.017794e-05

Joint ci ratio: 3.277985e-01	ci left: 4.241343e-05	ci right 5.935082e-05	k: 142	n:2820000
Cons ci ratio: 3.500791e-03	ci left: 3.072382e-01	ci right 3.083160e-01	k: 867931	n:2820000
KS ci ratio: 3.277985e-01	ci left: 4.241343e-05	ci right 5.935082e-05	k: 142	n:2820000
NEB   2820000 perm   4061 sec   (694 perm/sec)   p_kst 5.035461e-05   p_cons 3.077770e-01   p_joint 5.035461e-05

Joint ci ratio: 3.277985e-01	ci left: 4.226356e-05	ci right 5.914110e-05	k: 142	n:2830000
Cons ci ratio: 3.494608e-03	ci left: 3.072382e-01	ci right 3.083141e-01	k: 871006	n:2830000
KS ci ratio: 3.277985e-01	ci left: 4.226356e-05	ci right 5.914110e-05	k: 142	n:2830000
NEB   2830000 perm   4086 sec   (693 perm/sec)   p_kst 5.017668e-05   p_cons 3.077760e-01   p_joint 5.017668e-05

Joint ci ratio: 3.266583e-01	ci left: 4.243793e-05	ci right 5.931380e-05	k: 143	n:2840000
Cons ci ratio: 3.488596e-03	ci left: 3.072213e-01	ci right 3.082953e-01	k: 874033	n:2840000
KS ci ratio: 3.266583e-01	ci left: 4.243793e-05	ci right 5.931380e-05	k: 143	n:2840000
NEB   2840000 perm   4111 sec   (691 perm/sec)   p_kst 5.035211e-05   p_cons 3.077581e-01   p_joint 5.035211e-05

Joint ci ratio: 3.266584e-01	ci left: 4.228903e-05	ci right 5.910568e-05	k: 143	n:2850000
Cons ci ratio: 3.482581e-03	ci left: 3.072087e-01	ci right 3.082808e-01	k: 877072	n:2850000
KS ci ratio: 3.266584e-01	ci left: 4.228903e-05	ci right 5.910568e-05	k: 143	n:2850000
NEB   2850000 perm   4135 sec   (689 perm/sec)   p_kst 5.017544e-05   p_cons 3.077446e-01   p_joint 5.017544e-05

Joint ci ratio: 3.266584e-01	ci left: 4.214116e-05	ci right 5.889902e-05	k: 143	n:2860000
Cons ci ratio: 3.476335e-03	ci left: 3.072284e-01	ci right 3.082986e-01	k: 880203	n:2860000
KS ci ratio: 3.266584e-01	ci left: 4.214116e-05	ci right 5.889902e-05	k: 143	n:2860000
NEB   2860000 perm   4160 sec   (687 perm/sec)   p_kst 5.000000e-05   p_cons 3.077633e-01   p_joint 5.000000e-05

Joint ci ratio: 3.266584e-01	ci left: 4.199433e-05	ci right 5.869379e-05	k: 143	n:2870000
Cons ci ratio: 3.470369e-03	ci left: 3.072176e-01	ci right 3.082859e-01	k: 883247	n:2870000
KS ci ratio: 3.266584e-01	ci left: 4.199433e-05	ci right 5.869379e-05	k: 143	n:2870000
NEB   2870000 perm   4186 sec   (686 perm/sec)   p_kst 4.982578e-05   p_cons 3.077516e-01   p_joint 4.982578e-05

Joint ci ratio: 3.266584e-01	ci left: 4.184852e-05	ci right 5.849000e-05	k: 143	n:2880000
Cons ci ratio: 3.464538e-03	ci left: 3.071940e-01	ci right 3.082605e-01	k: 886254	n:2880000
KS ci ratio: 3.266584e-01	ci left: 4.184852e-05	ci right 5.849000e-05	k: 143	n:2880000
NEB   2880000 perm   4210 sec   (684 perm/sec)   p_kst 4.965278e-05   p_cons 3.077271e-01   p_joint 4.965278e-05

Joint ci ratio: 3.266585e-01	ci left: 4.170371e-05	ci right 5.828761e-05	k: 143	n:2890000
Cons ci ratio: 3.458559e-03	ci left: 3.071925e-01	ci right 3.082571e-01	k: 889324	n:2890000
KS ci ratio: 3.266585e-01	ci left: 4.170371e-05	ci right 5.828761e-05	k: 143	n:2890000
NEB   2890000 perm   4235 sec   (682 perm/sec)   p_kst 4.948097e-05   p_cons 3.077246e-01   p_joint 4.948097e-05

Joint ci ratio: 3.266585e-01	ci left: 4.155990e-05	ci right 5.808662e-05	k: 143	n:2900000
Cons ci ratio: 3.452468e-03	ci left: 3.072085e-01	ci right 3.082712e-01	k: 892445	n:2900000
KS ci ratio: 3.266585e-01	ci left: 4.155990e-05	ci right 5.808662e-05	k: 143	n:2900000
NEB   2900000 perm   4260 sec   (681 perm/sec)   p_kst 4.931034e-05   p_cons 3.077397e-01   p_joint 4.931034e-05

Joint ci ratio: 3.255301e-01	ci left: 4.173260e-05	ci right 5.825868e-05	k: 144	n:2910000
Cons ci ratio: 3.446410e-03	ci left: 3.072243e-01	ci right 3.082853e-01	k: 895566	n:2910000
KS ci ratio: 3.255301e-01	ci left: 4.173260e-05	ci right 5.825868e-05	k: 144	n:2910000
NEB   2910000 perm   4285 sec   (679 perm/sec)   p_kst 4.948454e-05   p_cons 3.077546e-01   p_joint 4.948454e-05

Joint ci ratio: 3.255301e-01	ci left: 4.158968e-05	ci right 5.805917e-05	k: 144	n:2920000
Cons ci ratio: 3.440505e-03	ci left: 3.072251e-01	ci right 3.082842e-01	k: 898643	n:2920000
KS ci ratio: 3.255301e-01	ci left: 4.158968e-05	ci right 5.805917e-05	k: 144	n:2920000
NEB   2920000 perm   4310 sec   (677 perm/sec)   p_kst 4.931507e-05   p_cons 3.077545e-01   p_joint 4.931507e-05

Joint ci ratio: 3.255302e-01	ci left: 4.144774e-05	ci right 5.786102e-05	k: 144	n:2930000
Cons ci ratio: 3.434264e-03	ci left: 3.072712e-01	ci right 3.083285e-01	k: 901853	n:2930000
KS ci ratio: 3.255302e-01	ci left: 4.144774e-05	ci right 5.786102e-05	k: 144	n:2930000
NEB   2930000 perm   4335 sec   (676 perm/sec)   p_kst 4.914676e-05   p_cons 3.077997e-01   p_joint 4.914676e-05

Joint ci ratio: 3.244134e-01	ci left: 4.161915e-05	ci right 5.803199e-05	k: 145	n:2940000
Cons ci ratio: 3.428413e-03	ci left: 3.072727e-01	ci right 3.083283e-01	k: 904933	n:2940000
KS ci ratio: 3.244134e-01	ci left: 4.161915e-05	ci right 5.803199e-05	k: 145	n:2940000
NEB   2940000 perm   4360 sec   (674 perm/sec)   p_kst 4.931973e-05   p_cons 3.078003e-01   p_joint 4.931973e-05

Joint ci ratio: 3.244134e-01	ci left: 4.147807e-05	ci right 5.783528e-05	k: 145	n:2950000
Cons ci ratio: 3.422535e-03	ci left: 3.072814e-01	ci right 3.083352e-01	k: 908034	n:2950000
KS ci ratio: 3.244134e-01	ci left: 4.147807e-05	ci right 5.783528e-05	k: 145	n:2950000
NEB   2950000 perm   4385 sec   (673 perm/sec)   p_kst 4.915254e-05   p_cons 3.078081e-01   p_joint 4.915254e-05

Joint ci ratio: 3.244135e-01	ci left: 4.133794e-05	ci right 5.763989e-05	k: 145	n:2960000
Cons ci ratio: 3.416684e-03	ci left: 3.072904e-01	ci right 3.083424e-01	k: 911136	n:2960000
KS ci ratio: 3.244135e-01	ci left: 4.133794e-05	ci right 5.763989e-05	k: 145	n:2960000
NEB   2960000 perm   4410 sec   (671 perm/sec)   p_kst 4.898649e-05   p_cons 3.078162e-01   p_joint 4.898649e-05

Joint ci ratio: 3.244135e-01	ci left: 4.119875e-05	ci right 5.744582e-05	k: 145	n:2970000
Cons ci ratio: 3.410841e-03	ci left: 3.073020e-01	ci right 3.083523e-01	k: 914246	n:2970000
KS ci ratio: 3.244135e-01	ci left: 4.119875e-05	ci right 5.744582e-05	k: 145	n:2970000
NEB   2970000 perm   4435 sec   (670 perm/sec)   p_kst 4.882155e-05   p_cons 3.078269e-01   p_joint 4.882155e-05

Joint ci ratio: 3.244135e-01	ci left: 4.106050e-05	ci right 5.725305e-05	k: 145	n:2980000
Cons ci ratio: 3.404988e-03	ci left: 3.073185e-01	ci right 3.083671e-01	k: 917371	n:2980000
KS ci ratio: 3.244135e-01	ci left: 4.106050e-05	ci right 5.725305e-05	k: 145	n:2980000
NEB   2980000 perm   4461 sec   (668 perm/sec)   p_kst 4.865772e-05   p_cons 3.078426e-01   p_joint 4.865772e-05

Joint ci ratio: 3.222140e-01	ci left: 4.153779e-05	ci right 5.778456e-05	k: 147	n:2990000
Cons ci ratio: 3.399149e-03	ci left: 3.073370e-01	ci right 3.083838e-01	k: 920502	n:2990000
KS ci ratio: 3.222140e-01	ci left: 4.153779e-05	ci right 5.778456e-05	k: 147	n:2990000
NEB   2990000 perm   4486 sec   (666 perm/sec)   p_kst 4.916388e-05   p_cons 3.078602e-01   p_joint 4.916388e-05

Joint ci ratio: 3.222140e-01	ci left: 4.139933e-05	ci right 5.759194e-05	k: 147	n:3000000
Cons ci ratio: 3.393356e-03	ci left: 3.073533e-01	ci right 3.083984e-01	k: 923627	n:3000000
KS ci ratio: 3.222140e-01	ci left: 4.139933e-05	ci right 5.759194e-05	k: 147	n:3000000
NEB   3000000 perm   4512 sec   (665 perm/sec)   p_kst 4.900000e-05   p_cons 3.078757e-01   p_joint 4.900000e-05

Joint ci ratio: 3.200586e-01	ci left: 4.187270e-05	ci right 5.811843e-05	k: 149	n:3010000
Cons ci ratio: 3.387778e-03	ci left: 3.073463e-01	ci right 3.083896e-01	k: 926682	n:3010000
KS ci ratio: 3.200586e-01	ci left: 4.187270e-05	ci right 5.811843e-05	k: 149	n:3010000
NEB   3010000 perm   4538 sec   (663 perm/sec)   p_kst 4.950166e-05   p_cons 3.078678e-01   p_joint 4.950166e-05

Joint ci ratio: 3.200587e-01	ci left: 4.173404e-05	ci right 5.792599e-05	k: 149	n:3020000
Cons ci ratio: 3.382279e-03	ci left: 3.073327e-01	ci right 3.083743e-01	k: 929717	n:3020000
KS ci ratio: 3.200587e-01	ci left: 4.173404e-05	ci right 5.792599e-05	k: 149	n:3020000
NEB   3020000 perm   4563 sec   (662 perm/sec)   p_kst 4.933775e-05   p_cons 3.078533e-01   p_joint 4.933775e-05

Joint ci ratio: 3.200587e-01	ci left: 4.159631e-05	ci right 5.773481e-05	k: 149	n:3030000
Cons ci ratio: 3.376493e-03	ci left: 3.073588e-01	ci right 3.083987e-01	k: 932872	n:3030000
KS ci ratio: 3.200587e-01	ci left: 4.159631e-05	ci right 5.773481e-05	k: 149	n:3030000
NEB   3030000 perm   4590 sec   (660 perm/sec)   p_kst 4.917492e-05   p_cons 3.078785e-01   p_joint 4.917492e-05

Joint ci ratio: 3.200587e-01	ci left: 4.145948e-05	ci right 5.754490e-05	k: 149	n:3040000
Cons ci ratio: 3.370864e-03	ci left: 3.073686e-01	ci right 3.084068e-01	k: 935978	n:3040000
KS ci ratio: 3.200587e-01	ci left: 4.145948e-05	ci right 5.754490e-05	k: 149	n:3040000
NEB   3040000 perm   4616 sec   (659 perm/sec)   p_kst 4.901316e-05   p_cons 3.078875e-01   p_joint 4.901316e-05

Joint ci ratio: 3.189971e-01	ci left: 4.162512e-05	ci right 5.771030e-05	k: 150	n:3050000
Cons ci ratio: 3.365315e-03	ci left: 3.073718e-01	ci right 3.084082e-01	k: 939064	n:3050000
KS ci ratio: 3.189971e-01	ci left: 4.162512e-05	ci right 5.771030e-05	k: 150	n:3050000
NEB   3050000 perm   4642 sec   (657 perm/sec)   p_kst 4.918033e-05   p_cons 3.078898e-01   p_joint 4.918033e-05

Joint ci ratio: 3.189972e-01	ci left: 4.148909e-05	ci right 5.752171e-05	k: 150	n:3060000
Cons ci ratio: 3.359917e-03	ci left: 3.073593e-01	ci right 3.083940e-01	k: 942102	n:3060000
KS ci ratio: 3.189972e-01	ci left: 4.148909e-05	ci right 5.752171e-05	k: 150	n:3060000
NEB   3060000 perm   4668 sec   (656 perm/sec)   p_kst 4.901961e-05   p_cons 3.078765e-01   p_joint 4.901961e-05

Joint ci ratio: 3.189972e-01	ci left: 4.135395e-05	ci right 5.733434e-05	k: 150	n:3070000
Cons ci ratio: 3.354353e-03	ci left: 3.073713e-01	ci right 3.084043e-01	k: 945215	n:3070000
KS ci ratio: 3.189972e-01	ci left: 4.135395e-05	ci right 5.733434e-05	k: 150	n:3070000
NEB   3070000 perm   4694 sec   (654 perm/sec)   p_kst 4.885993e-05   p_cons 3.078876e-01   p_joint 4.885993e-05

Joint ci ratio: 3.179461e-01	ci left: 4.151841e-05	ci right 5.749873e-05	k: 151	n:3080000
Cons ci ratio: 3.349140e-03	ci left: 3.073420e-01	ci right 3.083733e-01	k: 948201	n:3080000
KS ci ratio: 3.179461e-01	ci left: 4.151841e-05	ci right 5.749873e-05	k: 151	n:3080000
NEB   3080000 perm   4720 sec   (652 perm/sec)   p_kst 4.902597e-05   p_cons 3.078575e-01   p_joint 4.902597e-05

Joint ci ratio: 3.179461e-01	ci left: 4.138404e-05	ci right 5.731265e-05	k: 151	n:3090000
Cons ci ratio: 3.343598e-03	ci left: 3.073578e-01	ci right 3.083875e-01	k: 951326	n:3090000
KS ci ratio: 3.179461e-01	ci left: 4.138404e-05	ci right 5.731265e-05	k: 151	n:3090000
NEB   3090000 perm   4747 sec   (651 perm/sec)   p_kst 4.886731e-05   p_cons 3.078725e-01   p_joint 4.886731e-05

Joint ci ratio: 3.169053e-01	ci left: 4.154743e-05	ci right 5.747596e-05	k: 152	n:3100000
Cons ci ratio: 3.338264e-03	ci left: 3.073507e-01	ci right 3.083787e-01	k: 954380	n:3100000
KS ci ratio: 3.169053e-01	ci left: 4.154743e-05	ci right 5.747596e-05	k: 152	n:3100000
NEB   3100000 perm   4773 sec   (649 perm/sec)   p_kst 4.903226e-05   p_cons 3.078645e-01   p_joint 4.903226e-05

Joint ci ratio: 3.169054e-01	ci left: 4.141384e-05	ci right 5.729115e-05	k: 152	n:3110000
Cons ci ratio: 3.332829e-03	ci left: 3.073597e-01	ci right 3.083860e-01	k: 957484	n:3110000
KS ci ratio: 3.169054e-01	ci left: 4.141384e-05	ci right 5.729115e-05	k: 152	n:3110000
NEB   3110000 perm   4800 sec   (648 perm/sec)   p_kst 4.887460e-05   p_cons 3.078727e-01   p_joint 4.887460e-05

Joint ci ratio: 3.158748e-01	ci left: 4.157617e-05	ci right 5.745341e-05	k: 153	n:3120000
Cons ci ratio: 3.327210e-03	ci left: 3.073955e-01	ci right 3.084203e-01	k: 960672	n:3120000
KS ci ratio: 3.158748e-01	ci left: 4.157617e-05	ci right 5.745341e-05	k: 153	n:3120000
NEB   3120000 perm   4826 sec   (646 perm/sec)   p_kst 4.903846e-05   p_cons 3.079077e-01   p_joint 4.903846e-05

Joint ci ratio: 3.158748e-01	ci left: 4.144333e-05	ci right 5.726985e-05	k: 153	n:3130000
Cons ci ratio: 3.322003e-03	ci left: 3.073819e-01	ci right 3.084050e-01	k: 963706	n:3130000
KS ci ratio: 3.158748e-01	ci left: 4.144333e-05	ci right 5.726985e-05	k: 153	n:3130000
NEB   3130000 perm   4854 sec   (645 perm/sec)   p_kst 4.888179e-05   p_cons 3.078933e-01   p_joint 4.888179e-05

Joint ci ratio: 3.148542e-01	ci left: 4.160462e-05	ci right 5.743106e-05	k: 154	n:3140000
Cons ci ratio: 3.316902e-03	ci left: 3.073579e-01	ci right 3.083794e-01	k: 966707	n:3140000
KS ci ratio: 3.148542e-01	ci left: 4.160462e-05	ci right 5.743106e-05	k: 154	n:3140000
NEB   3140000 perm   4880 sec   (643 perm/sec)   p_kst 4.904459e-05   p_cons 3.078685e-01   p_joint 4.904459e-05

Joint ci ratio: 3.148542e-01	ci left: 4.147254e-05	ci right 5.724874e-05	k: 154	n:3150000
Cons ci ratio: 3.311704e-03	ci left: 3.073496e-01	ci right 3.083695e-01	k: 969757	n:3150000
KS ci ratio: 3.148542e-01	ci left: 4.147254e-05	ci right 5.724874e-05	k: 154	n:3150000
NEB   3150000 perm   4906 sec   (642 perm/sec)   p_kst 4.888889e-05   p_cons 3.078594e-01   p_joint 4.888889e-05

Joint ci ratio: 3.138434e-01	ci left: 4.163279e-05	ci right 5.740891e-05	k: 155	n:3160000
Cons ci ratio: 3.306530e-03	ci left: 3.073414e-01	ci right 3.083596e-01	k: 972807	n:3160000
KS ci ratio: 3.138434e-01	ci left: 4.163279e-05	ci right 5.740891e-05	k: 155	n:3160000
NEB   3160000 perm   4933 sec   (641 perm/sec)   p_kst 4.905063e-05   p_cons 3.078503e-01   p_joint 4.905063e-05

Joint ci ratio: 3.138434e-01	ci left: 4.150146e-05	ci right 5.722781e-05	k: 155	n:3170000
Cons ci ratio: 3.301333e-03	ci left: 3.073392e-01	ci right 3.083558e-01	k: 975876	n:3170000
KS ci ratio: 3.138434e-01	ci left: 4.150146e-05	ci right 5.722781e-05	k: 155	n:3170000
NEB   3170000 perm   4961 sec   (639 perm/sec)   p_kst 4.889590e-05   p_cons 3.078473e-01   p_joint 4.889590e-05

Joint ci ratio: 3.128423e-01	ci left: 4.166069e-05	ci right 5.738696e-05	k: 156	n:3180000
Cons ci ratio: 3.296169e-03	ci left: 3.073361e-01	ci right 3.083511e-01	k: 978942	n:3180000
KS ci ratio: 3.128423e-01	ci left: 4.166069e-05	ci right 5.738696e-05	k: 156	n:3180000
NEB   3180000 perm   4988 sec   (638 perm/sec)   p_kst 4.905660e-05   p_cons 3.078434e-01   p_joint 4.905660e-05

Joint ci ratio: 3.118507e-01	ci left: 4.181900e-05	ci right 5.754503e-05	k: 157	n:3190000
Cons ci ratio: 3.290886e-03	ci left: 3.073515e-01	ci right 3.083649e-01	k: 982067	n:3190000
KS ci ratio: 3.118507e-01	ci left: 4.181900e-05	ci right 5.754503e-05	k: 157	n:3190000
NEB   3190000 perm   5015 sec   (636 perm/sec)   p_kst 4.921630e-05   p_cons 3.078580e-01   p_joint 4.921630e-05

Joint ci ratio: 3.118507e-01	ci left: 4.168832e-05	ci right 5.736521e-05	k: 157	n:3200000
Cons ci ratio: 3.285510e-03	ci left: 3.073821e-01	ci right 3.083939e-01	k: 985241	n:3200000
KS ci ratio: 3.118507e-01	ci left: 4.168832e-05	ci right 5.736521e-05	k: 157	n:3200000
NEB   3200000 perm   5041 sec   (635 perm/sec)   p_kst 4.906250e-05   p_cons 3.078878e-01   p_joint 4.906250e-05

Joint ci ratio: 3.118507e-01	ci left: 4.155845e-05	ci right 5.718650e-05	k: 157	n:3210000
Cons ci ratio: 3.280409e-03	ci left: 3.073801e-01	ci right 3.083904e-01	k: 988311	n:3210000
KS ci ratio: 3.118507e-01	ci left: 4.155845e-05	ci right 5.718650e-05	k: 157	n:3210000
NEB   3210000 perm   5068 sec   (633 perm/sec)   p_kst 4.890966e-05   p_cons 3.078850e-01   p_joint 4.890966e-05

Joint ci ratio: 3.118508e-01	ci left: 4.142938e-05	ci right 5.700890e-05	k: 157	n:3220000
Cons ci ratio: 3.275390e-03	ci left: 3.073707e-01	ci right 3.083794e-01	k: 991357	n:3220000
KS ci ratio: 3.118508e-01	ci left: 4.142938e-05	ci right 5.700890e-05	k: 157	n:3220000
NEB   3220000 perm   5096 sec   (632 perm/sec)   p_kst 4.875776e-05   p_cons 3.078748e-01   p_joint 4.875776e-05

Joint ci ratio: 3.118508e-01	ci left: 4.130112e-05	ci right 5.683240e-05	k: 157	n:3230000
Cons ci ratio: 3.270429e-03	ci left: 3.073567e-01	ci right 3.083638e-01	k: 994388	n:3230000
KS ci ratio: 3.118508e-01	ci left: 4.130112e-05	ci right 5.683240e-05	k: 157	n:3230000
NEB   3230000 perm   5123 sec   (631 perm/sec)   p_kst 4.860681e-05   p_cons 3.078601e-01   p_joint 4.860681e-05

Joint ci ratio: 3.098955e-01	ci left: 4.174278e-05	ci right 5.732228e-05	k: 159	n:3240000
Cons ci ratio: 3.265375e-03	ci left: 3.073579e-01	ci right 3.083635e-01	k: 997468	n:3240000
KS ci ratio: 3.098955e-01	ci left: 4.174278e-05	ci right 5.732228e-05	k: 159	n:3240000
NEB   3240000 perm   5150 sec   (629 perm/sec)   p_kst 4.907407e-05   p_cons 3.078605e-01   p_joint 4.907407e-05

Joint ci ratio: 3.089316e-01	ci left: 4.189815e-05	ci right 5.747741e-05	k: 160	n:3250000
Cons ci ratio: 3.260415e-03	ci left: 3.073499e-01	ci right 3.083539e-01	k: 1000518	n:3250000
KS ci ratio: 3.089316e-01	ci left: 4.189815e-05	ci right 5.747741e-05	k: 160	n:3250000
NEB   3250000 perm   5178 sec   (628 perm/sec)   p_kst 4.923077e-05   p_cons 3.078517e-01   p_joint 4.923077e-05

Joint ci ratio: 3.089316e-01	ci left: 4.176963e-05	ci right 5.730110e-05	k: 160	n:3260000
Cons ci ratio: 3.255437e-03	ci left: 3.073471e-01	ci right 3.083496e-01	k: 1003585	n:3260000
KS ci ratio: 3.089316e-01	ci left: 4.176963e-05	ci right 5.730110e-05	k: 160	n:3260000
NEB   3260000 perm   5205 sec   (626 perm/sec)   p_kst 4.907975e-05   p_cons 3.078482e-01   p_joint 4.907975e-05

Joint ci ratio: 3.089316e-01	ci left: 4.164189e-05	ci right 5.712587e-05	k: 160	n:3270000
Cons ci ratio: 3.250415e-03	ci left: 3.073532e-01	ci right 3.083542e-01	k: 1006681	n:3270000
KS ci ratio: 3.089316e-01	ci left: 4.164189e-05	ci right 5.712587e-05	k: 160	n:3270000
NEB   3270000 perm   5233 sec   (625 perm/sec)   p_kst 4.892966e-05   p_cons 3.078535e-01   p_joint 4.892966e-05

Joint ci ratio: 3.089316e-01	ci left: 4.151493e-05	ci right 5.695170e-05	k: 160	n:3280000
Cons ci ratio: 3.245369e-03	ci left: 3.073654e-01	ci right 3.083648e-01	k: 1009797	n:3280000
KS ci ratio: 3.089316e-01	ci left: 4.151493e-05	ci right 5.695170e-05	k: 160	n:3280000
NEB   3280000 perm   5261 sec   (623 perm/sec)   p_kst 4.878049e-05   p_cons 3.078649e-01   p_joint 4.878049e-05

Joint ci ratio: 3.079767e-01	ci left: 4.166918e-05	ci right 5.710600e-05	k: 161	n:3290000
Cons ci ratio: 3.240608e-03	ci left: 3.073432e-01	ci right 3.083411e-01	k: 1012800	n:3290000
KS ci ratio: 3.079767e-01	ci left: 4.166918e-05	ci right 5.710600e-05	k: 161	n:3290000
NEB   3290000 perm   5289 sec   (622 perm/sec)   p_kst 4.893617e-05   p_cons 3.078419e-01   p_joint 4.893617e-05

Joint ci ratio: 3.060929e-01	ci left: 4.210228e-05	ci right 5.758556e-05	k: 163	n:3300000
Cons ci ratio: 3.235581e-03	ci left: 3.073589e-01	ci right 3.083553e-01	k: 1015928	n:3300000
KS ci ratio: 3.060929e-01	ci left: 4.210228e-05	ci right 5.758556e-05	k: 163	n:3300000
NEB   3300000 perm   5317 sec   (621 perm/sec)   p_kst 4.939394e-05   p_cons 3.078570e-01   p_joint 4.939394e-05

Joint ci ratio: 3.060929e-01	ci left: 4.197508e-05	ci right 5.741158e-05	k: 163	n:3310000
Cons ci ratio: 3.230691e-03	ci left: 3.073595e-01	ci right 3.083544e-01	k: 1019006	n:3310000
KS ci ratio: 3.060929e-01	ci left: 4.197508e-05	ci right 5.741158e-05	k: 163	n:3310000
NEB   3310000 perm   5345 sec   (619 perm/sec)   p_kst 4.924471e-05   p_cons 3.078568e-01   p_joint 4.924471e-05

Joint ci ratio: 3.060930e-01	ci left: 4.184865e-05	ci right 5.723866e-05	k: 163	n:3320000
Cons ci ratio: 3.225953e-03	ci left: 3.073429e-01	ci right 3.083363e-01	k: 1022027	n:3320000
KS ci ratio: 3.060930e-01	ci left: 4.184865e-05	ci right 5.723866e-05	k: 163	n:3320000
NEB   3320000 perm   5372 sec   (618 perm/sec)   p_kst 4.909639e-05   p_cons 3.078395e-01   p_joint 4.909639e-05

Joint ci ratio: 3.060930e-01	ci left: 4.172298e-05	ci right 5.706677e-05	k: 163	n:3330000
Cons ci ratio: 3.220947e-03	ci left: 3.073646e-01	ci right 3.083565e-01	k: 1025175	n:3330000
KS ci ratio: 3.060930e-01	ci left: 4.172298e-05	ci right 5.706677e-05	k: 163	n:3330000
NEB   3330000 perm   5401 sec   (617 perm/sec)   p_kst 4.894895e-05   p_cons 3.078604e-01   p_joint 4.894895e-05

Joint ci ratio: 3.051640e-01	ci left: 4.187451e-05	ci right 5.721820e-05	k: 164	n:3340000
Cons ci ratio: 3.216037e-03	ci left: 3.073765e-01	ci right 3.083669e-01	k: 1028291	n:3340000
KS ci ratio: 3.051640e-01	ci left: 4.187451e-05	ci right 5.721820e-05	k: 164	n:3340000
NEB   3340000 perm   5430 sec   (615 perm/sec)   p_kst 4.910180e-05   p_cons 3.078716e-01   p_joint 4.910180e-05

Joint ci ratio: 3.051640e-01	ci left: 4.174951e-05	ci right 5.704740e-05	k: 164	n:3350000
Cons ci ratio: 3.211204e-03	ci left: 3.073812e-01	ci right 3.083702e-01	k: 1031383	n:3350000
KS ci ratio: 3.051640e-01	ci left: 4.174951e-05	ci right 5.704740e-05	k: 164	n:3350000
NEB   3350000 perm   5457 sec   (614 perm/sec)   p_kst 4.895522e-05   p_cons 3.078755e-01   p_joint 4.895522e-05

Joint ci ratio: 3.051640e-01	ci left: 4.162525e-05	ci right 5.687762e-05	k: 164	n:3360000
Cons ci ratio: 3.206361e-03	ci left: 3.073901e-01	ci right 3.083775e-01	k: 1034489	n:3360000
KS ci ratio: 3.051640e-01	ci left: 4.162525e-05	ci right 5.687762e-05	k: 164	n:3360000
NEB   3360000 perm   5485 sec   (613 perm/sec)   p_kst 4.880952e-05   p_cons 3.078836e-01   p_joint 4.880952e-05

Joint ci ratio: 3.042435e-01	ci left: 4.177579e-05	ci right 5.702819e-05	k: 165	n:3370000
Cons ci ratio: 3.201664e-03	ci left: 3.073822e-01	ci right 3.083682e-01	k: 1037539	n:3370000
KS ci ratio: 3.042435e-01	ci left: 4.177579e-05	ci right 5.702819e-05	k: 165	n:3370000
NEB   3370000 perm   5514 sec   (611 perm/sec)   p_kst 4.896142e-05   p_cons 3.078751e-01   p_joint 4.896142e-05

Joint ci ratio: 3.042435e-01	ci left: 4.165219e-05	ci right 5.685947e-05	k: 165	n:3380000
Cons ci ratio: 3.196749e-03	ci left: 3.074064e-01	ci right 3.083910e-01	k: 1040697	n:3380000
KS ci ratio: 3.042435e-01	ci left: 4.165219e-05	ci right 5.685947e-05	k: 165	n:3380000
NEB   3380000 perm   5543 sec   (610 perm/sec)   p_kst 4.881657e-05   p_cons 3.078985e-01   p_joint 4.881657e-05

Joint ci ratio: 3.042435e-01	ci left: 4.152932e-05	ci right 5.669174e-05	k: 165	n:3390000
Cons ci ratio: 3.191990e-03	ci left: 3.074124e-01	ci right 3.083956e-01	k: 1043794	n:3390000
KS ci ratio: 3.042435e-01	ci left: 4.152932e-05	ci right 5.669174e-05	k: 165	n:3390000
NEB   3390000 perm   5571 sec   (608 perm/sec)   p_kst 4.867257e-05   p_cons 3.079038e-01   p_joint 4.867257e-05

Joint ci ratio: 3.042435e-01	ci left: 4.140718e-05	ci right 5.652500e-05	k: 165	n:3400000
Cons ci ratio: 3.187291e-03	ci left: 3.074135e-01	ci right 3.083951e-01	k: 1046874	n:3400000
KS ci ratio: 3.042435e-01	ci left: 4.140718e-05	ci right 5.652500e-05	k: 165	n:3400000
NEB   3400000 perm   5600 sec   (607 perm/sec)   p_kst 4.852941e-05   p_cons 3.079041e-01   p_joint 4.852941e-05

Joint ci ratio: 3.033312e-01	ci left: 4.155665e-05	ci right 5.667478e-05	k: 166	n:3410000
Cons ci ratio: 3.182575e-03	ci left: 3.074194e-01	ci right 3.083997e-01	k: 1049971	n:3410000
KS ci ratio: 3.033312e-01	ci left: 4.155665e-05	ci right 5.667478e-05	k: 166	n:3410000
NEB   3410000 perm   5629 sec   (606 perm/sec)   p_kst 4.868035e-05   p_cons 3.079094e-01   p_joint 4.868035e-05

Joint ci ratio: 3.033313e-01	ci left: 4.143514e-05	ci right 5.650906e-05	k: 166	n:3420000
Cons ci ratio: 3.178171e-03	ci left: 3.073862e-01	ci right 3.083650e-01	k: 1052934	n:3420000
KS ci ratio: 3.033313e-01	ci left: 4.143514e-05	ci right 5.650906e-05	k: 166	n:3420000
NEB   3420000 perm   5658 sec   (604 perm/sec)   p_kst 4.853801e-05   p_cons 3.078754e-01   p_joint 4.853801e-05

Joint ci ratio: 3.033313e-01	ci left: 4.131434e-05	ci right 5.634432e-05	k: 166	n:3430000
Cons ci ratio: 3.173404e-03	ci left: 3.074045e-01	ci right 3.083818e-01	k: 1056073	n:3430000
KS ci ratio: 3.033313e-01	ci left: 4.131434e-05	ci right 5.634432e-05	k: 166	n:3430000
NEB   3430000 perm   5686 sec   (603 perm/sec)   p_kst 4.839650e-05   p_cons 3.078930e-01   p_joint 4.839650e-05

Joint ci ratio: 3.033313e-01	ci left: 4.119424e-05	ci right 5.618052e-05	k: 166	n:3440000
Cons ci ratio: 3.168836e-03	ci left: 3.073988e-01	ci right 3.083747e-01	k: 1059130	n:3440000
KS ci ratio: 3.033313e-01	ci left: 4.119424e-05	ci right 5.618052e-05	k: 166	n:3440000
NEB   3440000 perm   5715 sec   (602 perm/sec)   p_kst 4.825581e-05   p_cons 3.078866e-01   p_joint 4.825581e-05

Joint ci ratio: 3.024272e-01	ci left: 4.134267e-05	ci right 5.632950e-05	k: 167	n:3450000
Cons ci ratio: 3.164369e-03	ci left: 3.073822e-01	ci right 3.083567e-01	k: 1062149	n:3450000
KS ci ratio: 3.024272e-01	ci left: 4.134267e-05	ci right 5.632950e-05	k: 167	n:3450000
NEB   3450000 perm   5744 sec   (601 perm/sec)   p_kst 4.840580e-05   p_cons 3.078693e-01   p_joint 4.840580e-05

Joint ci ratio: 3.024272e-01	ci left: 4.122318e-05	ci right 5.616669e-05	k: 167	n:3460000
Cons ci ratio: 3.159871e-03	ci left: 3.073723e-01	ci right 3.083454e-01	k: 1065191	n:3460000
KS ci ratio: 3.024272e-01	ci left: 4.122318e-05	ci right 5.616669e-05	k: 167	n:3460000
NEB   3460000 perm   5773 sec   (599 perm/sec)   p_kst 4.826590e-05   p_cons 3.078587e-01   p_joint 4.826590e-05

Joint ci ratio: 3.024272e-01	ci left: 4.110438e-05	ci right 5.600483e-05	k: 167	n:3470000
Cons ci ratio: 3.155370e-03	ci left: 3.073656e-01	ci right 3.083373e-01	k: 1068244	n:3470000
KS ci ratio: 3.024272e-01	ci left: 4.110438e-05	ci right 5.600483e-05	k: 167	n:3470000
NEB   3470000 perm   5802 sec   (598 perm/sec)   p_kst 4.812680e-05   p_cons 3.078513e-01   p_joint 4.812680e-05

Joint ci ratio: 3.015311e-01	ci left: 4.125185e-05	ci right 5.615296e-05	k: 168	n:3480000
Cons ci ratio: 3.150978e-03	ci left: 3.073466e-01	ci right 3.083169e-01	k: 1071254	n:3480000
KS ci ratio: 3.015311e-01	ci left: 4.125185e-05	ci right 5.615296e-05	k: 168	n:3480000
NEB   3480000 perm   5831 sec   (597 perm/sec)   p_kst 4.827586e-05   p_cons 3.078316e-01   p_joint 4.827586e-05

Joint ci ratio: 3.015311e-01	ci left: 4.113365e-05	ci right 5.599206e-05	k: 168	n:3490000
Cons ci ratio: 3.146366e-03	ci left: 3.073601e-01	ci right 3.083290e-01	k: 1074377	n:3490000
KS ci ratio: 3.015311e-01	ci left: 4.113365e-05	ci right 5.599206e-05	k: 168	n:3490000
NEB   3490000 perm   5861 sec   (595 perm/sec)   p_kst 4.813754e-05   p_cons 3.078444e-01   p_joint 4.813754e-05

Joint ci ratio: 2.980247e-01	ci left: 4.207305e-05	ci right 5.706063e-05	k: 172	n:3500000
Cons ci ratio: 3.141924e-03	ci left: 3.073533e-01	ci right 3.083208e-01	k: 1077429	n:3500000
KS ci ratio: 2.980247e-01	ci left: 4.207305e-05	ci right 5.706063e-05	k: 172	n:3500000
NEB   3500000 perm   5889 sec   (594 perm/sec)   p_kst 4.914286e-05   p_cons 3.078369e-01   p_joint 4.914286e-05

Joint ci ratio: 2.963167e-01	ci left: 4.248051e-05	ci right 5.751022e-05	k: 174	n:3510000
Cons ci ratio: 3.137393e-03	ci left: 3.073610e-01	ci right 3.083271e-01	k: 1080532	n:3510000
KS ci ratio: 2.963167e-01	ci left: 4.248051e-05	ci right 5.751022e-05	k: 174	n:3510000
NEB   3510000 perm   5919 sec   (593 perm/sec)   p_kst 4.957265e-05   p_cons 3.078439e-01   p_joint 4.957265e-05

Joint ci ratio: 2.963167e-01	ci left: 4.235983e-05	ci right 5.734684e-05	k: 174	n:3520000
Cons ci ratio: 3.132882e-03	ci left: 3.073686e-01	ci right 3.083334e-01	k: 1083635	n:3520000
KS ci ratio: 2.963167e-01	ci left: 4.235983e-05	ci right 5.734684e-05	k: 174	n:3520000
NEB   3520000 perm   5949 sec   (592 perm/sec)   p_kst 4.943182e-05   p_cons 3.078509e-01   p_joint 4.943182e-05

Joint ci ratio: 2.954737e-01	ci left: 4.250209e-05	ci right 5.748863e-05	k: 175	n:3530000
Cons ci ratio: 3.128514e-03	ci left: 3.073596e-01	ci right 3.083229e-01	k: 1086679	n:3530000
KS ci ratio: 2.954737e-01	ci left: 4.250209e-05	ci right 5.748863e-05	k: 175	n:3530000
NEB   3530000 perm   5978 sec   (590 perm/sec)   p_kst 4.957507e-05   p_cons 3.078411e-01   p_joint 4.957507e-05

Joint ci ratio: 2.946378e-01	ci left: 4.264361e-05	ci right 5.762957e-05	k: 176	n:3540000
Cons ci ratio: 3.124014e-03	ci left: 3.073709e-01	ci right 3.083329e-01	k: 1089795	n:3540000
KS ci ratio: 2.946378e-01	ci left: 4.264361e-05	ci right 5.762957e-05	k: 176	n:3540000
NEB   3540000 perm   6007 sec   (589 perm/sec)   p_kst 4.971751e-05   p_cons 3.078517e-01   p_joint 4.971751e-05

Joint ci ratio: 2.938090e-01	ci left: 4.278439e-05	ci right 5.776965e-05	k: 177	n:3550000
Cons ci ratio: 3.119498e-03	ci left: 3.073869e-01	ci right 3.083475e-01	k: 1092928	n:3550000
KS ci ratio: 2.938090e-01	ci left: 4.278439e-05	ci right 5.776965e-05	k: 177	n:3550000
NEB   3550000 perm   6037 sec   (588 perm/sec)   p_kst 4.985915e-05   p_cons 3.078670e-01   p_joint 4.985915e-05

Joint ci ratio: 2.929871e-01	ci left: 4.292443e-05	ci right 5.790889e-05	k: 178	n:3560000
Cons ci ratio: 3.115068e-03	ci left: 3.073938e-01	ci right 3.083531e-01	k: 1096029	n:3560000
KS ci ratio: 2.929871e-01	ci left: 4.292443e-05	ci right 5.790889e-05	k: 178	n:3560000
NEB   3560000 perm   6067 sec   (587 perm/sec)   p_kst 5.000000e-05   p_cons 3.078733e-01   p_joint 5.000000e-05

Joint ci ratio: 2.929872e-01	ci left: 4.280420e-05	ci right 5.774668e-05	k: 178	n:3570000
Cons ci ratio: 3.110657e-03	ci left: 3.074007e-01	ci right 3.083587e-01	k: 1099130	n:3570000
KS ci ratio: 2.929872e-01	ci left: 4.280420e-05	ci right 5.774668e-05	k: 178	n:3570000
NEB   3570000 perm   6098 sec   (585 perm/sec)   p_kst 4.985994e-05   p_cons 3.078796e-01   p_joint 4.985994e-05

Joint ci ratio: 2.929872e-01	ci left: 4.268463e-05	ci right 5.758538e-05	k: 178	n:3580000
Cons ci ratio: 3.106370e-03	ci left: 3.073931e-01	ci right 3.083497e-01	k: 1102179	n:3580000
KS ci ratio: 2.929872e-01	ci left: 4.268463e-05	ci right 5.758538e-05	k: 178	n:3580000
NEB   3580000 perm   6128 sec   (584 perm/sec)   p_kst 4.972067e-05   p_cons 3.078712e-01   p_joint 4.972067e-05

Joint ci ratio: 2.929872e-01	ci left: 4.256573e-05	ci right 5.742497e-05	k: 178	n:3590000
Cons ci ratio: 3.102044e-03	ci left: 3.073933e-01	ci right 3.083486e-01	k: 1105256	n:3590000
KS ci ratio: 2.929872e-01	ci left: 4.256573e-05	ci right 5.742497e-05	k: 178	n:3590000
NEB   3590000 perm   6158 sec   (583 perm/sec)   p_kst 4.958217e-05   p_cons 3.078708e-01   p_joint 4.958217e-05

Joint ci ratio: 2.921722e-01	ci left: 4.270489e-05	ci right 5.756357e-05	k: 179	n:3600000
Cons ci ratio: 3.097974e-03	ci left: 3.073607e-01	ci right 3.083146e-01	k: 1108215	n:3600000
KS ci ratio: 2.921722e-01	ci left: 4.270489e-05	ci right 5.756357e-05	k: 179	n:3600000
NEB   3600000 perm   6189 sec   (582 perm/sec)   p_kst 4.972222e-05   p_cons 3.078375e-01   p_joint 4.972222e-05

Joint ci ratio: 2.921722e-01	ci left: 4.258659e-05	ci right 5.740411e-05	k: 179	n:3610000
Cons ci ratio: 3.093673e-03	ci left: 3.073624e-01	ci right 3.083150e-01	k: 1111297	n:3610000
KS ci ratio: 2.921722e-01	ci left: 4.258659e-05	ci right 5.740411e-05	k: 179	n:3610000
NEB   3610000 perm   6219 sec   (580 perm/sec)   p_kst 4.958449e-05   p_cons 3.078385e-01   p_joint 4.958449e-05

Joint ci ratio: 2.921722e-01	ci left: 4.246895e-05	ci right 5.724554e-05	k: 179	n:3620000
Cons ci ratio: 3.089358e-03	ci left: 3.073684e-01	ci right 3.083197e-01	k: 1114395	n:3620000
KS ci ratio: 2.921722e-01	ci left: 4.246895e-05	ci right 5.724554e-05	k: 179	n:3620000
NEB   3620000 perm   6249 sec   (579 perm/sec)   p_kst 4.944751e-05   p_cons 3.078439e-01   p_joint 4.944751e-05

Joint ci ratio: 2.921723e-01	ci left: 4.235195e-05	ci right 5.708784e-05	k: 179	n:3630000
Cons ci ratio: 3.084949e-03	ci left: 3.073899e-01	ci right 3.083399e-01	k: 1117549	n:3630000
KS ci ratio: 2.921723e-01	ci left: 4.235195e-05	ci right 5.708784e-05	k: 179	n:3630000
NEB   3630000 perm   6280 sec   (578 perm/sec)   p_kst 4.931129e-05   p_cons 3.078647e-01   p_joint 4.931129e-05

Joint ci ratio: 2.921723e-01	ci left: 4.223560e-05	ci right 5.693100e-05	k: 179	n:3640000
Cons ci ratio: 3.080747e-03	ci left: 3.073851e-01	ci right 3.083338e-01	k: 1120608	n:3640000
KS ci ratio: 2.921723e-01	ci left: 4.223560e-05	ci right 5.693100e-05	k: 179	n:3640000
NEB   3640000 perm   6310 sec   (577 perm/sec)   p_kst 4.917582e-05   p_cons 3.078593e-01   p_joint 4.917582e-05

Joint ci ratio: 2.921723e-01	ci left: 4.211989e-05	ci right 5.677503e-05	k: 179	n:3650000
Cons ci ratio: 3.076603e-03	ci left: 3.073750e-01	ci right 3.083223e-01	k: 1123647	n:3650000
KS ci ratio: 2.921723e-01	ci left: 4.211989e-05	ci right 5.677503e-05	k: 179	n:3650000
NEB   3650000 perm   6340 sec   (576 perm/sec)   p_kst 4.904110e-05   p_cons 3.078485e-01   p_joint 4.904110e-05

Joint ci ratio: 2.921723e-01	ci left: 4.200481e-05	ci right 5.661990e-05	k: 179	n:3660000
Cons ci ratio: 3.072378e-03	ci left: 3.073782e-01	ci right 3.083243e-01	k: 1126735	n:3660000
KS ci ratio: 2.921723e-01	ci left: 4.200481e-05	ci right 5.661990e-05	k: 179	n:3660000
NEB   3660000 perm   6371 sec   (574 perm/sec)   p_kst 4.890710e-05   p_cons 3.078511e-01   p_joint 4.890710e-05

Joint ci ratio: 2.921723e-01	ci left: 4.189035e-05	ci right 5.646563e-05	k: 179	n:3670000
Cons ci ratio: 3.068188e-03	ci left: 3.073790e-01	ci right 3.083238e-01	k: 1129814	n:3670000
KS ci ratio: 2.921723e-01	ci left: 4.189035e-05	ci right 5.646563e-05	k: 179	n:3670000
NEB   3670000 perm   6402 sec   (573 perm/sec)   p_kst 4.877384e-05   p_cons 3.078512e-01   p_joint 4.877384e-05

Joint ci ratio: 2.921724e-01	ci left: 4.177652e-05	ci right 5.631219e-05	k: 179	n:3680000
Cons ci ratio: 3.064030e-03	ci left: 3.073779e-01	ci right 3.083214e-01	k: 1132886	n:3680000
KS ci ratio: 2.921724e-01	ci left: 4.177652e-05	ci right 5.631219e-05	k: 179	n:3680000
NEB   3680000 perm   6432 sec   (572 perm/sec)   p_kst 4.864130e-05   p_cons 3.078495e-01   p_joint 4.864130e-05

Joint ci ratio: 2.921724e-01	ci left: 4.166330e-05	ci right 5.615958e-05	k: 179	n:3690000
Cons ci ratio: 3.059814e-03	ci left: 3.073870e-01	ci right 3.083293e-01	k: 1135996	n:3690000
KS ci ratio: 2.921724e-01	ci left: 4.166330e-05	ci right 5.615958e-05	k: 179	n:3690000
NEB   3690000 perm   6462 sec   (571 perm/sec)   p_kst 4.850949e-05   p_cons 3.078580e-01   p_joint 4.850949e-05

Joint ci ratio: 2.921724e-01	ci left: 4.155070e-05	ci right 5.600780e-05	k: 179	n:3700000
Cons ci ratio: 3.055677e-03	ci left: 3.073875e-01	ci right 3.083285e-01	k: 1139074	n:3700000
KS ci ratio: 2.921724e-01	ci left: 4.155070e-05	ci right 5.600780e-05	k: 179	n:3700000
NEB   3700000 perm   6493 sec   (570 perm/sec)   p_kst 4.837838e-05   p_cons 3.078578e-01   p_joint 4.837838e-05

Joint ci ratio: 2.921724e-01	ci left: 4.143870e-05	ci right 5.585684e-05	k: 179	n:3710000
Cons ci ratio: 3.051457e-03	ci left: 3.074020e-01	ci right 3.083417e-01	k: 1142204	n:3710000
KS ci ratio: 2.921724e-01	ci left: 4.143870e-05	ci right 5.585684e-05	k: 179	n:3710000
NEB   3710000 perm   6524 sec   (569 perm/sec)   p_kst 4.824798e-05   p_cons 3.078717e-01   p_joint 4.824798e-05

Joint ci ratio: 2.913642e-01	ci left: 4.157645e-05	ci right 5.599512e-05	k: 180	n:3720000
Cons ci ratio: 3.047310e-03	ci left: 3.074086e-01	ci right 3.083471e-01	k: 1145305	n:3720000
KS ci ratio: 2.913642e-01	ci left: 4.157645e-05	ci right 5.599512e-05	k: 180	n:3720000
NEB   3720000 perm   6556 sec   (567 perm/sec)   p_kst 4.838710e-05   p_cons 3.078777e-01   p_joint 4.838710e-05

Joint ci ratio: 2.913642e-01	ci left: 4.146499e-05	ci right 5.584500e-05	k: 180	n:3730000
Cons ci ratio: 3.043367e-03	ci left: 3.073889e-01	ci right 3.083261e-01	k: 1148308	n:3730000
KS ci ratio: 2.913642e-01	ci left: 4.146499e-05	ci right 5.584500e-05	k: 180	n:3730000
NEB   3730000 perm   6588 sec   (566 perm/sec)   p_kst 4.825737e-05   p_cons 3.078574e-01   p_joint 4.825737e-05

Joint ci ratio: 2.913642e-01	ci left: 4.135412e-05	ci right 5.569568e-05	k: 180	n:3740000
Cons ci ratio: 3.039209e-03	ci left: 3.074017e-01	ci right 3.083376e-01	k: 1151432	n:3740000
KS ci ratio: 2.913642e-01	ci left: 4.135412e-05	ci right 5.569568e-05	k: 180	n:3740000
NEB   3740000 perm   6619 sec   (565 perm/sec)   p_kst 4.812834e-05   p_cons 3.078695e-01   p_joint 4.812834e-05

Joint ci ratio: 2.897676e-01	ci left: 4.173831e-05	ci right 5.611925e-05	k: 182	n:3750000
Cons ci ratio: 3.035127e-03	ci left: 3.074061e-01	ci right 3.083408e-01	k: 1154525	n:3750000
KS ci ratio: 2.897676e-01	ci left: 4.173831e-05	ci right 5.611925e-05	k: 182	n:3750000
NEB   3750000 perm   6650 sec   (564 perm/sec)   p_kst 4.853333e-05   p_cons 3.078733e-01   p_joint 4.853333e-05

Joint ci ratio: 2.897676e-01	ci left: 4.162730e-05	ci right 5.597000e-05	k: 182	n:3760000
Cons ci ratio: 3.031016e-03	ci left: 3.074169e-01	ci right 3.083504e-01	k: 1157642	n:3760000
KS ci ratio: 2.897676e-01	ci left: 4.162730e-05	ci right 5.597000e-05	k: 182	n:3760000
NEB   3760000 perm   6681 sec   (563 perm/sec)   p_kst 4.840426e-05   p_cons 3.078835e-01   p_joint 4.840426e-05

Joint ci ratio: 2.897677e-01	ci left: 4.151689e-05	ci right 5.582154e-05	k: 182	n:3770000
Cons ci ratio: 3.026959e-03	ci left: 3.074224e-01	ci right 3.083546e-01	k: 1160739	n:3770000
KS ci ratio: 2.897677e-01	ci left: 4.151689e-05	ci right 5.582154e-05	k: 182	n:3770000
NEB   3770000 perm   6713 sec   (562 perm/sec)   p_kst 4.827586e-05   p_cons 3.078883e-01   p_joint 4.827586e-05

Joint ci ratio: 2.897677e-01	ci left: 4.140705e-05	ci right 5.567386e-05	k: 182	n:3780000
Cons ci ratio: 3.022990e-03	ci left: 3.074177e-01	ci right 3.083487e-01	k: 1163798	n:3780000
KS ci ratio: 2.897677e-01	ci left: 4.140705e-05	ci right 5.567386e-05	k: 182	n:3780000
NEB   3780000 perm   6743 sec   (561 perm/sec)   p_kst 4.814815e-05   p_cons 3.078831e-01   p_joint 4.814815e-05

Joint ci ratio: 2.889792e-01	ci left: 4.154250e-05	ci right 5.580991e-05	k: 183	n:3790000
Cons ci ratio: 3.019121e-03	ci left: 3.074012e-01	ci right 3.083310e-01	k: 1166812	n:3790000
KS ci ratio: 2.889792e-01	ci left: 4.154250e-05	ci right 5.580991e-05	k: 183	n:3790000
NEB   3790000 perm   6775 sec   (559 perm/sec)   p_kst 4.828496e-05   p_cons 3.078660e-01   p_joint 4.828496e-05

Joint ci ratio: 2.889792e-01	ci left: 4.143318e-05	ci right 5.566304e-05	k: 183	n:3800000
Cons ci ratio: 3.015165e-03	ci left: 3.073991e-01	ci right 3.083276e-01	k: 1169880	n:3800000
KS ci ratio: 2.889792e-01	ci left: 4.143318e-05	ci right 5.566304e-05	k: 183	n:3800000
NEB   3800000 perm   6806 sec   (558 perm/sec)   p_kst 4.815789e-05   p_cons 3.078632e-01   p_joint 4.815789e-05

Joint ci ratio: 2.881971e-01	ci left: 4.156790e-05	ci right 5.579836e-05	k: 184	n:3810000
Cons ci ratio: 2.977134e-03	ci left: 3.122684e-01	ci right 3.131996e-01	k: 1191516	n:3810000
KS ci ratio: 2.881971e-01	ci left: 4.156790e-05	ci right 5.579836e-05	k: 184	n:3810000
NEB   3810000 perm   6838 sec   (557 perm/sec)   p_kst 4.829396e-05   p_cons 3.127339e-01   p_joint 4.829396e-05

Joint ci ratio: 2.881971e-01	ci left: 4.145909e-05	ci right 5.565229e-05	k: 184	n:3820000
Cons ci ratio: 2.973249e-03	ci left: 3.122668e-01	ci right 3.131969e-01	k: 1194635	n:3820000
KS ci ratio: 2.881971e-01	ci left: 4.145909e-05	ci right 5.565229e-05	k: 184	n:3820000
NEB   3820000 perm   6870 sec   (556 perm/sec)   p_kst 4.816754e-05   p_cons 3.127317e-01   p_joint 4.816754e-05

Joint ci ratio: 2.881971e-01	ci left: 4.135084e-05	ci right 5.550699e-05	k: 184	n:3830000
Cons ci ratio: 2.969364e-03	ci left: 3.122676e-01	ci right 3.131964e-01	k: 1197763	n:3830000
KS ci ratio: 2.881971e-01	ci left: 4.135084e-05	ci right 5.550699e-05	k: 184	n:3830000
NEB   3830000 perm   6902 sec   (555 perm/sec)   p_kst 4.804178e-05   p_cons 3.127319e-01   p_joint 4.804178e-05

Joint ci ratio: 2.881972e-01	ci left: 4.124315e-05	ci right 5.536244e-05	k: 184	n:3840000
Cons ci ratio: 2.965467e-03	ci left: 3.122723e-01	ci right 3.131999e-01	k: 1200906	n:3840000
KS ci ratio: 2.881972e-01	ci left: 4.124315e-05	ci right 5.536244e-05	k: 184	n:3840000
NEB   3840000 perm   6935 sec   (554 perm/sec)   p_kst 4.791667e-05   p_cons 3.127359e-01   p_joint 4.791667e-05

Joint ci ratio: 2.874214e-01	ci left: 4.137702e-05	ci right 5.549708e-05	k: 185	n:3850000
Cons ci ratio: 2.961471e-03	ci left: 3.122935e-01	ci right 3.132200e-01	k: 1204113	n:3850000
KS ci ratio: 2.874214e-01	ci left: 4.137702e-05	ci right 5.549708e-05	k: 185	n:3850000
NEB   3850000 perm   6968 sec   (553 perm/sec)   p_kst 4.805195e-05   p_cons 3.127566e-01   p_joint 4.805195e-05

Joint ci ratio: 2.874214e-01	ci left: 4.126983e-05	ci right 5.535330e-05	k: 185	n:3860000
Cons ci ratio: 2.957573e-03	ci left: 3.123028e-01	ci right 3.132281e-01	k: 1207274	n:3860000
KS ci ratio: 2.874214e-01	ci left: 4.126983e-05	ci right 5.535330e-05	k: 185	n:3860000
NEB   3860000 perm   7000 sec   (551 perm/sec)   p_kst 4.792746e-05   p_cons 3.127653e-01   p_joint 4.792746e-05

Joint ci ratio: 2.866518e-01	ci left: 4.140298e-05	ci right 5.548722e-05	k: 186	n:3870000
Cons ci ratio: 2.953734e-03	ci left: 3.123055e-01	ci right 3.132296e-01	k: 1210410	n:3870000
KS ci ratio: 2.866518e-01	ci left: 4.140298e-05	ci right 5.548722e-05	k: 186	n:3870000
NEB   3870000 perm   7032 sec   (550 perm/sec)   p_kst 4.806202e-05   p_cons 3.127674e-01   p_joint 4.806202e-05

Joint ci ratio: 2.851311e-01	ci left: 4.177479e-05	ci right 5.589653e-05	k: 188	n:3880000
Cons ci ratio: 2.949997e-03	ci left: 3.122957e-01	ci right 3.132185e-01	k: 1213497	n:3880000
KS ci ratio: 2.851311e-01	ci left: 4.177479e-05	ci right 5.589653e-05	k: 188	n:3880000
NEB   3880000 perm   7064 sec   (549 perm/sec)   p_kst 4.845361e-05   p_cons 3.127570e-01   p_joint 4.845361e-05

Joint ci ratio: 2.843797e-01	ci left: 4.190611e-05	ci right 5.602822e-05	k: 189	n:3890000
Cons ci ratio: 2.946218e-03	ci left: 3.122941e-01	ci right 3.132157e-01	k: 1216616	n:3890000
KS ci ratio: 2.843797e-01	ci left: 4.190611e-05	ci right 5.602822e-05	k: 189	n:3890000
NEB   3890000 perm   7095 sec   (548 perm/sec)   p_kst 4.858612e-05   p_cons 3.127548e-01   p_joint 4.858612e-05

Joint ci ratio: 2.843797e-01	ci left: 4.179866e-05	ci right 5.588455e-05	k: 189	n:3900000
Cons ci ratio: 2.942415e-03	ci left: 3.122981e-01	ci right 3.132186e-01	k: 1219757	n:3900000
KS ci ratio: 2.843797e-01	ci left: 4.179866e-05	ci right 5.588455e-05	k: 189	n:3900000
NEB   3900000 perm   7128 sec   (547 perm/sec)   p_kst 4.846154e-05   p_cons 3.127582e-01   p_joint 4.846154e-05

Joint ci ratio: 2.843797e-01	ci left: 4.169175e-05	ci right 5.574163e-05	k: 189	n:3910000
Cons ci ratio: 2.938633e-03	ci left: 3.123011e-01	ci right 3.132204e-01	k: 1222894	n:3910000
KS ci ratio: 2.843797e-01	ci left: 4.169175e-05	ci right 5.574163e-05	k: 189	n:3910000
NEB   3910000 perm   7161 sec   (546 perm/sec)   p_kst 4.833760e-05   p_cons 3.127606e-01   p_joint 4.833760e-05

Joint ci ratio: 2.843798e-01	ci left: 4.158540e-05	ci right 5.559943e-05	k: 189	n:3920000
Cons ci ratio: 2.935028e-03	ci left: 3.122804e-01	ci right 3.131985e-01	k: 1225938	n:3920000
KS ci ratio: 2.843798e-01	ci left: 4.158540e-05	ci right 5.559943e-05	k: 189	n:3920000
NEB   3920000 perm   7193 sec   (545 perm/sec)   p_kst 4.821429e-05   p_cons 3.127393e-01   p_joint 4.821429e-05

Joint ci ratio: 2.843798e-01	ci left: 4.147958e-05	ci right 5.545796e-05	k: 189	n:3930000
Cons ci ratio: 2.931317e-03	ci left: 3.122773e-01	ci right 3.131942e-01	k: 1229051	n:3930000
KS ci ratio: 2.843798e-01	ci left: 4.147958e-05	ci right 5.545796e-05	k: 189	n:3930000
NEB   3930000 perm   7226 sec   (544 perm/sec)   p_kst 4.809160e-05   p_cons 3.127356e-01   p_joint 4.809160e-05

Joint ci ratio: 2.828947e-01	ci left: 4.184581e-05	ci right 5.586082e-05	k: 191	n:3940000
Cons ci ratio: 2.927623e-03	ci left: 3.122737e-01	ci right 3.131895e-01	k: 1232162	n:3940000
KS ci ratio: 2.828947e-01	ci left: 4.184581e-05	ci right 5.586082e-05	k: 191	n:3940000
NEB   3940000 perm   7259 sec   (543 perm/sec)   p_kst 4.847716e-05   p_cons 3.127315e-01   p_joint 4.847716e-05

Joint ci ratio: 2.828947e-01	ci left: 4.173988e-05	ci right 5.571940e-05	k: 191	n:3950000
Cons ci ratio: 2.923907e-03	ci left: 3.122755e-01	ci right 3.131901e-01	k: 1235294	n:3950000
KS ci ratio: 2.828947e-01	ci left: 4.173988e-05	ci right 5.571940e-05	k: 191	n:3950000
NEB   3950000 perm   7291 sec   (542 perm/sec)   p_kst 4.835443e-05   p_cons 3.127327e-01   p_joint 4.835443e-05

Joint ci ratio: 2.821609e-01	ci left: 4.186911e-05	ci right 5.584907e-05	k: 192	n:3960000
Cons ci ratio: 2.920335e-03	ci left: 3.122580e-01	ci right 3.131715e-01	k: 1238350	n:3960000
KS ci ratio: 2.821609e-01	ci left: 4.186911e-05	ci right 5.584907e-05	k: 192	n:3960000
NEB   3960000 perm   7324 sec   (541 perm/sec)   p_kst 4.848485e-05   p_cons 3.127146e-01   p_joint 4.848485e-05

Joint ci ratio: 2.821609e-01	ci left: 4.176364e-05	ci right 5.570839e-05	k: 192	n:3970000
Cons ci ratio: 2.916508e-03	ci left: 3.122802e-01	ci right 3.131926e-01	k: 1241563	n:3970000
KS ci ratio: 2.821609e-01	ci left: 4.176364e-05	ci right 5.570839e-05	k: 192	n:3970000
NEB   3970000 perm   7357 sec   (540 perm/sec)   p_kst 4.836272e-05   p_cons 3.127363e-01   p_joint 4.836272e-05

Joint ci ratio: 2.821609e-01	ci left: 4.165871e-05	ci right 5.556842e-05	k: 192	n:3980000
Cons ci ratio: 2.912929e-03	ci left: 3.122679e-01	ci right 3.131791e-01	k: 1244639	n:3980000
KS ci ratio: 2.821609e-01	ci left: 4.165871e-05	ci right 5.556842e-05	k: 192	n:3980000
NEB   3980000 perm   7391 sec   (538 perm/sec)   p_kst 4.824121e-05   p_cons 3.127234e-01   p_joint 4.824121e-05

Joint ci ratio: 2.814327e-01	ci left: 4.178722e-05	ci right 5.569744e-05	k: 193	n:3990000
Cons ci ratio: 2.909351e-03	ci left: 3.122574e-01	ci right 3.131674e-01	k: 1247722	n:3990000
KS ci ratio: 2.814327e-01	ci left: 4.178722e-05	ci right 5.569744e-05	k: 193	n:3990000
NEB   3990000 perm   7423 sec   (537 perm/sec)   p_kst 4.837093e-05   p_cons 3.127123e-01   p_joint 4.837093e-05

Joint ci ratio: 2.814327e-01	ci left: 4.168275e-05	ci right 5.555820e-05	k: 193	n:4000000
Cons ci ratio: 2.905711e-03	ci left: 3.122582e-01	ci right 3.131671e-01	k: 1250850	n:4000000
KS ci ratio: 2.814327e-01	ci left: 4.168275e-05	ci right 5.555820e-05	k: 193	n:4000000
NEB   4000000 perm   7456 sec   (536 perm/sec)   p_kst 4.825000e-05   p_cons 3.127125e-01   p_joint 4.825000e-05

Joint ci ratio: 2.814328e-01	ci left: 4.157880e-05	ci right 5.541965e-05	k: 193	n:4010000
Cons ci ratio: 2.902099e-03	ci left: 3.122567e-01	ci right 3.131645e-01	k: 1253969	n:4010000
KS ci ratio: 2.814328e-01	ci left: 4.157880e-05	ci right 5.541965e-05	k: 193	n:4010000
NEB   4010000 perm   7489 sec   (535 perm/sec)   p_kst 4.812968e-05   p_cons 3.127105e-01   p_joint 4.812968e-05

Joint ci ratio: 2.807102e-01	ci left: 4.170660e-05	ci right 5.554803e-05	k: 194	n:4020000
Cons ci ratio: 2.898489e-03	ci left: 3.122570e-01	ci right 3.131636e-01	k: 1257095	n:4020000
KS ci ratio: 2.807102e-01	ci left: 4.170660e-05	ci right 5.554803e-05	k: 194	n:4020000
NEB   4020000 perm   7523 sec   (534 perm/sec)   p_kst 4.825871e-05   p_cons 3.127102e-01   p_joint 4.825871e-05

Joint ci ratio: 2.807102e-01	ci left: 4.160311e-05	ci right 5.541020e-05	k: 194	n:4030000
Cons ci ratio: 2.894884e-03	ci left: 3.122586e-01	ci right 3.131640e-01	k: 1260226	n:4030000
KS ci ratio: 2.807102e-01	ci left: 4.160311e-05	ci right 5.541020e-05	k: 194	n:4030000
NEB   4030000 perm   7556 sec   (533 perm/sec)   p_kst 4.813896e-05   p_cons 3.127112e-01   p_joint 4.813896e-05

Joint ci ratio: 2.807102e-01	ci left: 4.150013e-05	ci right 5.527304e-05	k: 194	n:4040000
Cons ci ratio: 2.891193e-03	ci left: 3.122749e-01	ci right 3.131793e-01	k: 1263417	n:4040000
KS ci ratio: 2.807102e-01	ci left: 4.150013e-05	ci right 5.527304e-05	k: 194	n:4040000
NEB   4040000 perm   7589 sec   (532 perm/sec)   p_kst 4.801980e-05   p_cons 3.127270e-01   p_joint 4.801980e-05

Joint ci ratio: 2.799932e-01	ci left: 4.162722e-05	ci right 5.540079e-05	k: 195	n:4050000
Cons ci ratio: 2.887649e-03	ci left: 3.122715e-01	ci right 3.131747e-01	k: 1266528	n:4050000
KS ci ratio: 2.799932e-01	ci left: 4.162722e-05	ci right 5.540079e-05	k: 195	n:4050000
NEB   4050000 perm   7622 sec   (531 perm/sec)   p_kst 4.814815e-05   p_cons 3.127230e-01   p_joint 4.814815e-05

Joint ci ratio: 2.799932e-01	ci left: 4.152469e-05	ci right 5.526434e-05	k: 195	n:4060000
Cons ci ratio: 2.884031e-03	ci left: 3.122808e-01	ci right 3.131830e-01	k: 1269691	n:4060000
KS ci ratio: 2.799932e-01	ci left: 4.152469e-05	ci right 5.526434e-05	k: 195	n:4060000
NEB   4060000 perm   7656 sec   (530 perm/sec)   p_kst 4.802956e-05   p_cons 3.127318e-01   p_joint 4.802956e-05

Joint ci ratio: 2.799932e-01	ci left: 4.142266e-05	ci right 5.512856e-05	k: 195	n:4070000
Cons ci ratio: 2.880536e-03	ci left: 3.122739e-01	ci right 3.131750e-01	k: 1272788	n:4070000
KS ci ratio: 2.799932e-01	ci left: 4.142266e-05	ci right 5.512856e-05	k: 195	n:4070000
NEB   4070000 perm   7689 sec   (529 perm/sec)   p_kst 4.791155e-05   p_cons 3.127243e-01   p_joint 4.791155e-05

Joint ci ratio: 2.799932e-01	ci left: 4.132113e-05	ci right 5.499344e-05	k: 195	n:4080000
Cons ci ratio: 2.877097e-03	ci left: 3.122605e-01	ci right 3.131604e-01	k: 1275858	n:4080000
KS ci ratio: 2.799932e-01	ci left: 4.132113e-05	ci right 5.499344e-05	k: 195	n:4080000
NEB   4080000 perm   7723 sec   (528 perm/sec)   p_kst 4.779412e-05   p_cons 3.127103e-01   p_joint 4.779412e-05

Joint ci ratio: 2.799933e-01	ci left: 4.122010e-05	ci right 5.485898e-05	k: 195	n:4090000
Cons ci ratio: 2.873745e-03	ci left: 3.122361e-01	ci right 3.131349e-01	k: 1278883	n:4090000
KS ci ratio: 2.799933e-01	ci left: 4.122010e-05	ci right 5.485898e-05	k: 195	n:4090000
NEB   4090000 perm   7757 sec   (527 perm/sec)   p_kst 4.767726e-05   p_cons 3.126853e-01   p_joint 4.767726e-05

Joint ci ratio: 2.792817e-01	ci left: 4.134637e-05	ci right 5.498614e-05	k: 196	n:4100000
Cons ci ratio: 2.870261e-03	ci left: 3.122332e-01	ci right 3.131309e-01	k: 1281996	n:4100000
KS ci ratio: 2.792817e-01	ci left: 4.134637e-05	ci right 5.498614e-05	k: 196	n:4100000
NEB   4100000 perm   7791 sec   (526 perm/sec)   p_kst 4.780488e-05   p_cons 3.126820e-01   p_joint 4.780488e-05

Joint ci ratio: 2.792817e-01	ci left: 4.124577e-05	ci right 5.485235e-05	k: 196	n:4110000
Cons ci ratio: 2.866805e-03	ci left: 3.122280e-01	ci right 3.131246e-01	k: 1285099	n:4110000
KS ci ratio: 2.792817e-01	ci left: 4.124577e-05	ci right 5.485235e-05	k: 196	n:4110000
NEB   4110000 perm   7825 sec   (525 perm/sec)   p_kst 4.768856e-05   p_cons 3.126762e-01   p_joint 4.768856e-05

Joint ci ratio: 2.792817e-01	ci left: 4.114566e-05	ci right 5.471922e-05	k: 196	n:4120000
Cons ci ratio: 2.863233e-03	ci left: 3.122422e-01	ci right 3.131377e-01	k: 1288282	n:4120000
KS ci ratio: 2.792817e-01	ci left: 4.114566e-05	ci right 5.471922e-05	k: 196	n:4120000
NEB   4120000 perm   7859 sec   (524 perm/sec)   p_kst 4.757282e-05   p_cons 3.126898e-01   p_joint 4.757282e-05

Joint ci ratio: 2.778747e-01	ci left: 4.149647e-05	ci right 5.510472e-05	k: 198	n:4130000
Cons ci ratio: 2.859773e-03	ci left: 3.122415e-01	ci right 3.131360e-01	k: 1291404	n:4130000
KS ci ratio: 2.778747e-01	ci left: 4.149647e-05	ci right 5.510472e-05	k: 198	n:4130000
NEB   4130000 perm   7893 sec   (523 perm/sec)   p_kst 4.794189e-05   p_cons 3.126886e-01   p_joint 4.794189e-05

Joint ci ratio: 2.771791e-01	ci left: 4.162097e-05	ci right 5.522993e-05	k: 199	n:4140000
Cons ci ratio: 2.856201e-03	ci left: 3.122595e-01	ci right 3.131529e-01	k: 1294603	n:4140000
KS ci ratio: 2.771791e-01	ci left: 4.162097e-05	ci right 5.522993e-05	k: 199	n:4140000
NEB   4140000 perm   7927 sec   (522 perm/sec)   p_kst 4.806763e-05   p_cons 3.127060e-01   p_joint 4.806763e-05

Joint ci ratio: 2.771791e-01	ci left: 4.152068e-05	ci right 5.509685e-05	k: 199	n:4150000
Cons ci ratio: 2.852777e-03	ci left: 3.122571e-01	ci right 3.131494e-01	k: 1297718	n:4150000
KS ci ratio: 2.771791e-01	ci left: 4.152068e-05	ci right 5.509685e-05	k: 199	n:4150000
NEB   4150000 perm   7960 sec   (521 perm/sec)   p_kst 4.795181e-05   p_cons 3.127031e-01   p_joint 4.795181e-05

Joint ci ratio: 2.771792e-01	ci left: 4.142087e-05	ci right 5.496441e-05	k: 199	n:4160000
Cons ci ratio: 2.849370e-03	ci left: 3.122540e-01	ci right 3.131453e-01	k: 1300830	n:4160000
KS ci ratio: 2.771792e-01	ci left: 4.142087e-05	ci right 5.496441e-05	k: 199	n:4160000
NEB   4160000 perm   7995 sec   (520 perm/sec)   p_kst 4.783654e-05   p_cons 3.126995e-01   p_joint 4.783654e-05

Joint ci ratio: 2.764888e-01	ci left: 4.154470e-05	ci right 5.508901e-05	k: 200	n:4170000
Cons ci ratio: 2.846069e-03	ci left: 3.122368e-01	ci right 3.131270e-01	k: 1303883	n:4170000
KS ci ratio: 2.764888e-01	ci left: 4.154470e-05	ci right 5.508901e-05	k: 200	n:4170000
NEB   4170000 perm   8029 sec   (519 perm/sec)   p_kst 4.796163e-05   p_cons 3.126818e-01   p_joint 4.796163e-05

Joint ci ratio: 2.764888e-01	ci left: 4.144531e-05	ci right 5.495722e-05	k: 200	n:4180000
Cons ci ratio: 2.842623e-03	ci left: 3.122434e-01	ci right 3.131325e-01	k: 1307035	n:4180000
KS ci ratio: 2.764888e-01	ci left: 4.144531e-05	ci right 5.495722e-05	k: 200	n:4180000
NEB   4180000 perm   8063 sec   (518 perm/sec)   p_kst 4.784689e-05   p_cons 3.126878e-01   p_joint 4.784689e-05

Joint ci ratio: 2.764888e-01	ci left: 4.134640e-05	ci right 5.482605e-05	k: 200	n:4190000
Cons ci ratio: 2.839208e-03	ci left: 3.122471e-01	ci right 3.131351e-01	k: 1310175	n:4190000
KS ci ratio: 2.764888e-01	ci left: 4.134640e-05	ci right 5.482605e-05	k: 200	n:4190000
NEB   4190000 perm   8097 sec   (517 perm/sec)   p_kst 4.773270e-05   p_cons 3.126909e-01   p_joint 4.773270e-05

Joint ci ratio: 2.764888e-01	ci left: 4.124796e-05	ci right 5.469552e-05	k: 200	n:4200000
Cons ci ratio: 2.835829e-03	ci left: 3.122471e-01	ci right 3.131341e-01	k: 1313300	n:4200000
KS ci ratio: 2.764888e-01	ci left: 4.124796e-05	ci right 5.469552e-05	k: 200	n:4200000
NEB   4200000 perm   8132 sec   (516 perm/sec)   p_kst 4.761905e-05   p_cons 3.126905e-01   p_joint 4.761905e-05

Joint ci ratio: 2.764888e-01	ci left: 4.114998e-05	ci right 5.456560e-05	k: 200	n:4210000
Cons ci ratio: 2.832420e-03	ci left: 3.122536e-01	ci right 3.131395e-01	k: 1316452	n:4210000
KS ci ratio: 2.764888e-01	ci left: 4.114998e-05	ci right 5.456560e-05	k: 200	n:4210000
NEB   4210000 perm   8167 sec   (515 perm/sec)   p_kst 4.750594e-05   p_cons 3.126964e-01   p_joint 4.750594e-05

Joint ci ratio: 2.758036e-01	ci left: 4.127303e-05	ci right 5.468963e-05	k: 201	n:4220000
Cons ci ratio: 2.829135e-03	ci left: 3.122430e-01	ci right 3.131279e-01	k: 1319532	n:4220000
KS ci ratio: 2.758036e-01	ci left: 4.127303e-05	ci right 5.468963e-05	k: 201	n:4220000
NEB   4220000 perm   8202 sec   (515 perm/sec)   p_kst 4.763033e-05   p_cons 3.126853e-01   p_joint 4.763033e-05

Joint ci ratio: 2.751234e-01	ci left: 4.139554e-05	ci right 5.481303e-05	k: 202	n:4230000
Cons ci ratio: 2.825772e-03	ci left: 3.122462e-01	ci right 3.131300e-01	k: 1322670	n:4230000
KS ci ratio: 2.751234e-01	ci left: 4.139554e-05	ci right 5.481303e-05	k: 202	n:4230000
NEB   4230000 perm   8237 sec   (514 perm/sec)   p_kst 4.775414e-05   p_cons 3.126879e-01   p_joint 4.775414e-05

Joint ci ratio: 2.751234e-01	ci left: 4.129790e-05	ci right 5.468376e-05	k: 202	n:4240000
Cons ci ratio: 2.822468e-03	ci left: 3.122420e-01	ci right 3.131248e-01	k: 1325777	n:4240000
KS ci ratio: 2.751234e-01	ci left: 4.129790e-05	ci right 5.468376e-05	k: 202	n:4240000
NEB   4240000 perm   8272 sec   (513 perm/sec)   p_kst 4.764151e-05   p_cons 3.126833e-01   p_joint 4.764151e-05

Joint ci ratio: 2.744483e-01	ci left: 4.141982e-05	ci right 5.480655e-05	k: 203	n:4250000
Cons ci ratio: 2.819027e-03	ci left: 3.122607e-01	ci right 3.131424e-01	k: 1328981	n:4250000
KS ci ratio: 2.744483e-01	ci left: 4.141982e-05	ci right 5.480655e-05	k: 203	n:4250000
NEB   4250000 perm   8307 sec   (512 perm/sec)   p_kst 4.776471e-05   p_cons 3.127014e-01   p_joint 4.776471e-05

Joint ci ratio: 2.737781e-01	ci left: 4.154120e-05	ci right 5.492874e-05	k: 204	n:4260000
Cons ci ratio: 2.815751e-03	ci left: 3.122558e-01	ci right 3.131365e-01	k: 1332085	n:4260000
KS ci ratio: 2.737781e-01	ci left: 4.154120e-05	ci right 5.492874e-05	k: 204	n:4260000
NEB   4260000 perm   8342 sec   (511 perm/sec)   p_kst 4.788732e-05   p_cons 3.126960e-01   p_joint 4.788732e-05

Joint ci ratio: 2.731127e-01	ci left: 4.166205e-05	ci right 5.505030e-05	k: 205	n:4270000
Cons ci ratio: 2.812443e-03	ci left: 3.122577e-01	ci right 3.131374e-01	k: 1335218	n:4270000
KS ci ratio: 2.731127e-01	ci left: 4.166205e-05	ci right 5.505030e-05	k: 205	n:4270000
NEB   4270000 perm   8377 sec   (510 perm/sec)   p_kst 4.800937e-05   p_cons 3.126974e-01   p_joint 4.800937e-05

Joint ci ratio: 2.731127e-01	ci left: 4.156471e-05	ci right 5.492168e-05	k: 205	n:4280000
Cons ci ratio: 2.809143e-03	ci left: 3.122601e-01	ci right 3.131387e-01	k: 1338353	n:4280000
KS ci ratio: 2.731127e-01	ci left: 4.156471e-05	ci right 5.492168e-05	k: 205	n:4280000
NEB   4280000 perm   8413 sec   (509 perm/sec)   p_kst 4.789720e-05   p_cons 3.126993e-01   p_joint 4.789720e-05

Joint ci ratio: 2.731128e-01	ci left: 4.146782e-05	ci right 5.479366e-05	k: 205	n:4290000
Cons ci ratio: 2.805851e-03	ci left: 3.122632e-01	ci right 3.131408e-01	k: 1341491	n:4290000
KS ci ratio: 2.731128e-01	ci left: 4.146782e-05	ci right 5.479366e-05	k: 205	n:4290000
NEB   4290000 perm   8448 sec   (508 perm/sec)   p_kst 4.778555e-05   p_cons 3.127019e-01   p_joint 4.778555e-05

Joint ci ratio: 2.731128e-01	ci left: 4.137138e-05	ci right 5.466623e-05	k: 205	n:4300000
Cons ci ratio: 2.802615e-03	ci left: 3.122593e-01	ci right 3.131359e-01	k: 1344599	n:4300000
KS ci ratio: 2.731128e-01	ci left: 4.137138e-05	ci right 5.466623e-05	k: 205	n:4300000
NEB   4300000 perm   8482 sec   (507 perm/sec)   p_kst 4.767442e-05   p_cons 3.126974e-01   p_joint 4.767442e-05

Joint ci ratio: 2.731128e-01	ci left: 4.127539e-05	ci right 5.453940e-05	k: 205	n:4310000
Cons ci ratio: 2.799309e-03	ci left: 3.122679e-01	ci right 3.131435e-01	k: 1347761	n:4310000
KS ci ratio: 2.731128e-01	ci left: 4.127539e-05	ci right 5.453940e-05	k: 205	n:4310000
NEB   4310000 perm   8518 sec   (506 perm/sec)   p_kst 4.756381e-05   p_cons 3.127056e-01   p_joint 4.756381e-05

Joint ci ratio: 2.731128e-01	ci left: 4.117985e-05	ci right 5.441315e-05	k: 205	n:4320000
Cons ci ratio: 2.796175e-03	ci left: 3.122517e-01	ci right 3.131263e-01	k: 1350816	n:4320000
KS ci ratio: 2.731128e-01	ci left: 4.117985e-05	ci right 5.441315e-05	k: 205	n:4320000
NEB   4320000 perm   8553 sec   (505 perm/sec)   p_kst 4.745370e-05   p_cons 3.126889e-01   p_joint 4.745370e-05

Joint ci ratio: 2.724523e-01	ci left: 4.129990e-05	ci right 5.453419e-05	k: 206	n:4330000
Cons ci ratio: 2.792969e-03	ci left: 3.122486e-01	ci right 3.131221e-01	k: 1353927	n:4330000
KS ci ratio: 2.724523e-01	ci left: 4.129990e-05	ci right 5.453419e-05	k: 206	n:4330000
NEB   4330000 perm   8589 sec   (504 perm/sec)   p_kst 4.757506e-05   p_cons 3.126852e-01   p_joint 4.757506e-05

Joint ci ratio: 2.717966e-01	ci left: 4.141943e-05	ci right 5.465463e-05	k: 207	n:4340000
Cons ci ratio: 2.789788e-03	ci left: 3.122431e-01	ci right 3.131156e-01	k: 1357028	n:4340000
KS ci ratio: 2.717966e-01	ci left: 4.141943e-05	ci right 5.465463e-05	k: 207	n:4340000
NEB   4340000 perm   8625 sec   (503 perm/sec)   p_kst 4.769585e-05   p_cons 3.126793e-01   p_joint 4.769585e-05

Joint ci ratio: 2.717966e-01	ci left: 4.132421e-05	ci right 5.452899e-05	k: 207	n:4350000
Cons ci ratio: 2.786583e-03	ci left: 3.122430e-01	ci right 3.131145e-01	k: 1360152	n:4350000
KS ci ratio: 2.717966e-01	ci left: 4.132421e-05	ci right 5.452899e-05	k: 207	n:4350000
NEB   4350000 perm   8661 sec   (502 perm/sec)   p_kst 4.758621e-05   p_cons 3.126786e-01   p_joint 4.758621e-05

Joint ci ratio: 2.717966e-01	ci left: 4.122943e-05	ci right 5.440392e-05	k: 207	n:4360000
Cons ci ratio: 2.783323e-03	ci left: 3.122532e-01	ci right 3.131237e-01	k: 1363321	n:4360000
KS ci ratio: 2.717966e-01	ci left: 4.122943e-05	ci right 5.440392e-05	k: 207	n:4360000
NEB   4360000 perm   8697 sec   (501 perm/sec)   p_kst 4.747706e-05   p_cons 3.126883e-01   p_joint 4.747706e-05

Joint ci ratio: 2.711456e-01	ci left: 4.134835e-05	ci right 5.452380e-05	k: 208	n:4370000
Cons ci ratio: 2.780119e-03	ci left: 3.122564e-01	ci right 3.131260e-01	k: 1366460	n:4370000
KS ci ratio: 2.711456e-01	ci left: 4.134835e-05	ci right 5.452380e-05	k: 208	n:4370000
NEB   4370000 perm   8733 sec   (500 perm/sec)   p_kst 4.759725e-05   p_cons 3.126911e-01   p_joint 4.759725e-05

Joint ci ratio: 2.698574e-01	ci left: 4.167960e-05	ci right 5.488682e-05	k: 210	n:4380000
Cons ci ratio: 2.777029e-03	ci left: 3.122437e-01	ci right 3.131122e-01	k: 1369529	n:4380000
KS ci ratio: 2.698574e-01	ci left: 4.167960e-05	ci right 5.488682e-05	k: 210	n:4380000
NEB   4380000 perm   8770 sec   (499 perm/sec)   p_kst 4.794521e-05   p_cons 3.126779e-01   p_joint 4.794521e-05

Joint ci ratio: 2.692202e-01	ci left: 4.179706e-05	ci right 5.500494e-05	k: 211	n:4390000
Cons ci ratio: 2.773849e-03	ci left: 3.122465e-01	ci right 3.131141e-01	k: 1372666	n:4390000
KS ci ratio: 2.692202e-01	ci left: 4.179706e-05	ci right 5.500494e-05	k: 211	n:4390000
NEB   4390000 perm   8806 sec   (499 perm/sec)   p_kst 4.806378e-05   p_cons 3.126802e-01   p_joint 4.806378e-05

Joint ci ratio: 2.673352e-01	ci left: 4.233803e-05	ci right 5.560750e-05	k: 214	n:4400000
Cons ci ratio: 2.770773e-03	ci left: 3.122350e-01	ci right 3.131016e-01	k: 1375740	n:4400000
KS ci ratio: 2.673352e-01	ci left: 4.233803e-05	ci right 5.560750e-05	k: 214	n:4400000
NEB   4400000 perm   8842 sec   (498 perm/sec)   p_kst 4.863636e-05   p_cons 3.126682e-01   p_joint 4.863636e-05

Joint ci ratio: 2.667157e-01	ci left: 4.245361e-05	ci right 5.572330e-05	k: 215	n:4410000
Cons ci ratio: 2.767626e-03	ci left: 3.122360e-01	ci right 3.131016e-01	k: 1378869	n:4410000
KS ci ratio: 2.667157e-01	ci left: 4.245361e-05	ci right 5.572330e-05	k: 215	n:4410000
NEB   4410000 perm   8878 sec   (497 perm/sec)   p_kst 4.875283e-05   p_cons 3.126687e-01   p_joint 4.875283e-05

Joint ci ratio: 2.667157e-01	ci left: 4.235756e-05	ci right 5.559723e-05	k: 215	n:4420000
Cons ci ratio: 2.764438e-03	ci left: 3.122452e-01	ci right 3.131098e-01	k: 1382034	n:4420000
KS ci ratio: 2.667157e-01	ci left: 4.235756e-05	ci right 5.559723e-05	k: 215	n:4420000
NEB   4420000 perm   8914 sec   (496 perm/sec)   p_kst 4.864253e-05   p_cons 3.126774e-01   p_joint 4.864253e-05

Joint ci ratio: 2.667157e-01	ci left: 4.226194e-05	ci right 5.547173e-05	k: 215	n:4430000
Cons ci ratio: 2.761370e-03	ci left: 3.122372e-01	ci right 3.131008e-01	k: 1385123	n:4430000
KS ci ratio: 2.667157e-01	ci left: 4.226194e-05	ci right 5.547173e-05	k: 215	n:4430000
NEB   4430000 perm   8950 sec   (495 perm/sec)   p_kst 4.853273e-05   p_cons 3.126688e-01   p_joint 4.853273e-05

Joint ci ratio: 2.667157e-01	ci left: 4.216676e-05	ci right 5.534679e-05	k: 215	n:4440000
Cons ci ratio: 2.758325e-03	ci left: 3.122274e-01	ci right 3.130900e-01	k: 1388204	n:4440000
KS ci ratio: 2.667157e-01	ci left: 4.216676e-05	ci right 5.534679e-05	k: 215	n:4440000
NEB   4440000 perm   8986 sec   (494 perm/sec)   p_kst 4.842342e-05   p_cons 3.126586e-01   p_joint 4.842342e-05

Joint ci ratio: 2.661004e-01	ci left: 4.228171e-05	ci right 5.546211e-05	k: 216	n:4450000
Cons ci ratio: 2.755133e-03	ci left: 3.122421e-01	ci right 3.131038e-01	k: 1391394	n:4450000
KS ci ratio: 2.661004e-01	ci left: 4.228171e-05	ci right 5.546211e-05	k: 216	n:4450000
NEB   4450000 perm   9022 sec   (493 perm/sec)   p_kst 4.853933e-05   p_cons 3.126728e-01   p_joint 4.853933e-05

Joint ci ratio: 2.654894e-01	ci left: 4.239619e-05	ci right 5.557688e-05	k: 217	n:4460000
Cons ci ratio: 2.752068e-03	ci left: 3.122386e-01	ci right 3.130993e-01	k: 1394503	n:4460000
KS ci ratio: 2.654894e-01	ci left: 4.239619e-05	ci right 5.557688e-05	k: 217	n:4460000
NEB   4460000 perm   9059 sec   (492 perm/sec)   p_kst 4.865471e-05   p_cons 3.126688e-01   p_joint 4.865471e-05

Joint ci ratio: 2.654894e-01	ci left: 4.230134e-05	ci right 5.545254e-05	k: 217	n:4470000
Cons ci ratio: 2.749037e-03	ci left: 3.122313e-01	ci right 3.130911e-01	k: 1397595	n:4470000
KS ci ratio: 2.654894e-01	ci left: 4.230134e-05	ci right 5.545254e-05	k: 217	n:4470000
NEB   4470000 perm   9096 sec   (491 perm/sec)   p_kst 4.854586e-05   p_cons 3.126611e-01   p_joint 4.854586e-05

Joint ci ratio: 2.648825e-01	ci left: 4.241530e-05	ci right 5.556678e-05	k: 218	n:4480000
Cons ci ratio: 2.745960e-03	ci left: 3.122330e-01	ci right 3.130918e-01	k: 1400727	n:4480000
KS ci ratio: 2.648825e-01	ci left: 4.241530e-05	ci right 5.556678e-05	k: 218	n:4480000
NEB   4480000 perm   9132 sec   (491 perm/sec)   p_kst 4.866071e-05   p_cons 3.126623e-01   p_joint 4.866071e-05

Joint ci ratio: 2.648826e-01	ci left: 4.232083e-05	ci right 5.544303e-05	k: 218	n:4490000
Cons ci ratio: 2.742895e-03	ci left: 3.122342e-01	ci right 3.130921e-01	k: 1403857	n:4490000
KS ci ratio: 2.648826e-01	ci left: 4.232083e-05	ci right 5.544303e-05	k: 218	n:4490000
NEB   4490000 perm   9170 sec   (490 perm/sec)   p_kst 4.855234e-05   p_cons 3.126630e-01   p_joint 4.855234e-05

Joint ci ratio: 2.648826e-01	ci left: 4.222678e-05	ci right 5.531982e-05	k: 218	n:4500000
Cons ci ratio: 2.739848e-03	ci left: 3.122344e-01	ci right 3.130912e-01	k: 1406982	n:4500000
KS ci ratio: 2.648826e-01	ci left: 4.222678e-05	ci right 5.531982e-05	k: 218	n:4500000
NEB   4500000 perm   9207 sec   (489 perm/sec)   p_kst 4.844444e-05   p_cons 3.126627e-01   p_joint 4.844444e-05

Joint ci ratio: 2.648826e-01	ci left: 4.213315e-05	ci right 5.519716e-05	k: 218	n:4510000
Cons ci ratio: 2.736793e-03	ci left: 3.122374e-01	ci right 3.130933e-01	k: 1410120	n:4510000
KS ci ratio: 2.648826e-01	ci left: 4.213315e-05	ci right 5.519716e-05	k: 218	n:4510000
NEB   4510000 perm   9245 sec   (488 perm/sec)   p_kst 4.833703e-05   p_cons 3.126652e-01   p_joint 4.833703e-05

Joint ci ratio: 2.648826e-01	ci left: 4.203994e-05	ci right 5.507504e-05	k: 218	n:4520000
Cons ci ratio: 2.733720e-03	ci left: 3.122448e-01	ci right 3.130997e-01	k: 1413278	n:4520000
KS ci ratio: 2.648826e-01	ci left: 4.203994e-05	ci right 5.507504e-05	k: 218	n:4520000
NEB   4520000 perm   9283 sec   (487 perm/sec)   p_kst 4.823009e-05   p_cons 3.126721e-01   p_joint 4.823009e-05

Joint ci ratio: 2.642799e-01	ci left: 4.215325e-05	ci right 5.518882e-05	k: 219	n:4530000
Cons ci ratio: 2.730729e-03	ci left: 3.122409e-01	ci right 3.130949e-01	k: 1416385	n:4530000
KS ci ratio: 2.642799e-01	ci left: 4.215325e-05	ci right 5.518882e-05	k: 219	n:4530000
NEB   4530000 perm   9320 sec   (486 perm/sec)   p_kst 4.834437e-05   p_cons 3.126678e-01   p_joint 4.834437e-05

Joint ci ratio: 2.636813e-01	ci left: 4.226609e-05	ci right 5.530207e-05	k: 220	n:4540000
Cons ci ratio: 2.727800e-03	ci left: 3.122287e-01	ci right 3.130817e-01	k: 1419454	n:4540000
KS ci ratio: 2.636813e-01	ci left: 4.226609e-05	ci right 5.530207e-05	k: 220	n:4540000
NEB   4540000 perm   9356 sec   (485 perm/sec)   p_kst 4.845815e-05   p_cons 3.126551e-01   p_joint 4.845815e-05

Joint ci ratio: 2.636813e-01	ci left: 4.217319e-05	ci right 5.518053e-05	k: 220	n:4550000
Cons ci ratio: 2.724717e-03	ci left: 3.122424e-01	ci right 3.130945e-01	k: 1422641	n:4550000
KS ci ratio: 2.636813e-01	ci left: 4.217319e-05	ci right 5.518053e-05	k: 220	n:4550000
NEB   4550000 perm   9394 sec   (484 perm/sec)   p_kst 4.835165e-05   p_cons 3.126684e-01   p_joint 4.835165e-05

Joint ci ratio: 2.630867e-01	ci left: 4.228553e-05	ci right 5.529326e-05	k: 221	n:4560000
Cons ci ratio: 2.721791e-03	ci left: 3.122329e-01	ci right 3.130840e-01	k: 1425722	n:4560000
KS ci ratio: 2.630867e-01	ci left: 4.228553e-05	ci right 5.529326e-05	k: 221	n:4560000
NEB   4560000 perm   9430 sec   (484 perm/sec)   p_kst 4.846491e-05   p_cons 3.126583e-01   p_joint 4.846491e-05

Joint ci ratio: 2.630868e-01	ci left: 4.219300e-05	ci right 5.517227e-05	k: 221	n:4570000
Cons ci ratio: 2.718758e-03	ci left: 3.122417e-01	ci right 3.130920e-01	k: 1428887	n:4570000
KS ci ratio: 2.630868e-01	ci left: 4.219300e-05	ci right 5.517227e-05	k: 221	n:4570000
NEB   4570000 perm   9467 sec   (483 perm/sec)   p_kst 4.835886e-05   p_cons 3.126667e-01   p_joint 4.835886e-05

Joint ci ratio: 2.630868e-01	ci left: 4.210088e-05	ci right 5.505180e-05	k: 221	n:4580000
Cons ci ratio: 2.715787e-03	ci left: 3.122425e-01	ci right 3.130918e-01	k: 1432015	n:4580000
KS ci ratio: 2.630868e-01	ci left: 4.210088e-05	ci right 5.505180e-05	k: 221	n:4580000
NEB   4580000 perm   9504 sec   (482 perm/sec)   p_kst 4.825328e-05   p_cons 3.126670e-01   p_joint 4.825328e-05

Joint ci ratio: 2.630868e-01	ci left: 4.200915e-05	ci right 5.493187e-05	k: 221	n:4590000
Cons ci ratio: 2.712911e-03	ci left: 3.122295e-01	ci right 3.130779e-01	k: 1435080	n:4590000
KS ci ratio: 2.630868e-01	ci left: 4.200915e-05	ci right 5.493187e-05	k: 221	n:4590000
NEB   4590000 perm   9541 sec   (481 perm/sec)   p_kst 4.814815e-05   p_cons 3.126536e-01   p_joint 4.814815e-05

Joint ci ratio: 2.630868e-01	ci left: 4.191783e-05	ci right 5.481245e-05	k: 221	n:4600000
Cons ci ratio: 2.710004e-03	ci left: 3.122231e-01	ci right 3.130706e-01	k: 1438175	n:4600000
KS ci ratio: 2.630868e-01	ci left: 4.191783e-05	ci right 5.481245e-05	k: 221	n:4600000
NEB   4600000 perm   9578 sec   (480 perm/sec)   p_kst 4.804348e-05   p_cons 3.126467e-01   p_joint 4.804348e-05

Joint ci ratio: 2.630868e-01	ci left: 4.182690e-05	ci right 5.469355e-05	k: 221	n:4610000
Cons ci ratio: 2.707063e-03	ci left: 3.122237e-01	ci right 3.130703e-01	k: 1441302	n:4610000
KS ci ratio: 2.630868e-01	ci left: 4.182690e-05	ci right 5.469355e-05	k: 221	n:4610000
NEB   4610000 perm   9615 sec   (479 perm/sec)   p_kst 4.793926e-05   p_cons 3.126469e-01   p_joint 4.793926e-05

Joint ci ratio: 2.630868e-01	ci left: 4.173637e-05	ci right 5.457517e-05	k: 221	n:4620000
Cons ci ratio: 2.703989e-03	ci left: 3.122468e-01	ci right 3.130924e-01	k: 1444533	n:4620000
KS ci ratio: 2.630868e-01	ci left: 4.173637e-05	ci right 5.457517e-05	k: 221	n:4620000
NEB   4620000 perm   9653 sec   (479 perm/sec)   p_kst 4.783550e-05   p_cons 3.126695e-01   p_joint 4.783550e-05

Joint ci ratio: 2.619097e-01	ci left: 4.204977e-05	ci right 5.491762e-05	k: 223	n:4630000
Cons ci ratio: 2.701165e-03	ci left: 3.122317e-01	ci right 3.130765e-01	k: 1447588	n:4630000
KS ci ratio: 2.619097e-01	ci left: 4.204977e-05	ci right 5.491762e-05	k: 223	n:4630000
NEB   4630000 perm   9690 sec   (478 perm/sec)   p_kst 4.816415e-05   p_cons 3.126540e-01   p_joint 4.816415e-05

Joint ci ratio: 2.607481e-01	ci left: 4.236195e-05	ci right 5.525846e-05	k: 225	n:4640000
Cons ci ratio: 2.698215e-03	ci left: 3.122381e-01	ci right 3.130819e-01	k: 1450742	n:4640000
KS ci ratio: 2.607481e-01	ci left: 4.236195e-05	ci right 5.525846e-05	k: 225	n:4640000
NEB   4640000 perm   9728 sec   (477 perm/sec)   p_kst 4.849138e-05   p_cons 3.126599e-01   p_joint 4.849138e-05

Joint ci ratio: 2.601732e-01	ci left: 4.247186e-05	ci right 5.536869e-05	k: 226	n:4650000
Cons ci ratio: 2.695261e-03	ci left: 3.122468e-01	ci right 3.130897e-01	k: 1453907	n:4650000
KS ci ratio: 2.601732e-01	ci left: 4.247186e-05	ci right 5.536869e-05	k: 226	n:4650000
NEB   4650000 perm   9766 sec   (476 perm/sec)   p_kst 4.860215e-05   p_cons 3.126682e-01   p_joint 4.860215e-05

Joint ci ratio: 2.590345e-01	ci left: 4.278198e-05	ci right 5.570692e-05	k: 228	n:4660000
Cons ci ratio: 2.692361e-03	ci left: 3.122482e-01	ci right 3.130902e-01	k: 1457038	n:4660000
KS ci ratio: 2.590345e-01	ci left: 4.278198e-05	ci right 5.570692e-05	k: 228	n:4660000
NEB   4660000 perm   9804 sec   (475 perm/sec)   p_kst 4.892704e-05   p_cons 3.126691e-01   p_joint 4.892704e-05

Joint ci ratio: 2.590345e-01	ci left: 4.269037e-05	ci right 5.558764e-05	k: 228	n:4670000
Cons ci ratio: 2.689478e-03	ci left: 3.122485e-01	ci right 3.130896e-01	k: 1460164	n:4670000
KS ci ratio: 2.590345e-01	ci left: 4.269037e-05	ci right 5.558764e-05	k: 228	n:4670000
NEB   4670000 perm   9842 sec   (474 perm/sec)   p_kst 4.882227e-05   p_cons 3.126690e-01   p_joint 4.882227e-05

Joint ci ratio: 2.590345e-01	ci left: 4.259915e-05	ci right 5.546886e-05	k: 228	n:4680000
Cons ci ratio: 2.686579e-03	ci left: 3.122529e-01	ci right 3.130931e-01	k: 1463309	n:4680000
KS ci ratio: 2.590345e-01	ci left: 4.259915e-05	ci right 5.546886e-05	k: 228	n:4680000
NEB   4680000 perm   9879 sec   (474 perm/sec)   p_kst 4.871795e-05   p_cons 3.126729e-01   p_joint 4.871795e-05

Joint ci ratio: 2.590345e-01	ci left: 4.250832e-05	ci right 5.535059e-05	k: 228	n:4690000
Cons ci ratio: 2.683735e-03	ci left: 3.122498e-01	ci right 3.130891e-01	k: 1466419	n:4690000
KS ci ratio: 2.590345e-01	ci left: 4.250832e-05	ci right 5.535059e-05	k: 228	n:4690000
NEB   4690000 perm   9918 sec   (473 perm/sec)   p_kst 4.861407e-05   p_cons 3.126693e-01   p_joint 4.861407e-05

Joint ci ratio: 2.590346e-01	ci left: 4.241787e-05	ci right 5.523282e-05	k: 228	n:4700000
Cons ci ratio: 2.680925e-03	ci left: 3.122428e-01	ci right 3.130812e-01	k: 1469511	n:4700000
KS ci ratio: 2.590346e-01	ci left: 4.241787e-05	ci right 5.523282e-05	k: 228	n:4700000
NEB   4700000 perm   9955 sec   (472 perm/sec)   p_kst 4.851064e-05   p_cons 3.126619e-01   p_joint 4.851064e-05

Joint ci ratio: 2.590346e-01	ci left: 4.232782e-05	ci right 5.511556e-05	k: 228	n:4710000
Cons ci ratio: 2.678107e-03	ci left: 3.122385e-01	ci right 3.130760e-01	k: 1472615	n:4710000
KS ci ratio: 2.590346e-01	ci left: 4.232782e-05	ci right 5.511556e-05	k: 228	n:4710000
NEB   4710000 perm   9993 sec   (471 perm/sec)   p_kst 4.840764e-05   p_cons 3.126571e-01   p_joint 4.840764e-05

Joint ci ratio: 2.590346e-01	ci left: 4.223814e-05	ci right 5.499879e-05	k: 228	n:4720000
Cons ci ratio: 2.675287e-03	ci left: 3.122360e-01	ci right 3.130727e-01	k: 1475728	n:4720000
KS ci ratio: 2.590346e-01	ci left: 4.223814e-05	ci right 5.499879e-05	k: 228	n:4720000
NEB   4720000 perm   10032 sec   (471 perm/sec)   p_kst 4.830508e-05   p_cons 3.126542e-01   p_joint 4.830508e-05

Joint ci ratio: 2.590346e-01	ci left: 4.214884e-05	ci right 5.488251e-05	k: 228	n:4730000
Cons ci ratio: 2.672355e-03	ci left: 3.122528e-01	ci right 3.130886e-01	k: 1478932	n:4730000
KS ci ratio: 2.590346e-01	ci left: 4.214884e-05	ci right 5.488251e-05	k: 228	n:4730000
NEB   4730000 perm   10070 sec   (470 perm/sec)   p_kst 4.820296e-05   p_cons 3.126706e-01   p_joint 4.820296e-05

Joint ci ratio: 2.584708e-01	ci left: 4.225721e-05	ci right 5.499135e-05	k: 229	n:4740000
Cons ci ratio: 2.669439e-03	ci left: 3.122687e-01	ci right 3.131036e-01	k: 1482132	n:4740000
KS ci ratio: 2.584708e-01	ci left: 4.225721e-05	ci right 5.499135e-05	k: 229	n:4740000
NEB   4740000 perm   10109 sec   (469 perm/sec)   p_kst 4.831224e-05   p_cons 3.126861e-01   p_joint 4.831224e-05

Joint ci ratio: 2.584709e-01	ci left: 4.216824e-05	ci right 5.487558e-05	k: 229	n:4750000
Cons ci ratio: 2.666673e-03	ci left: 3.122618e-01	ci right 3.130959e-01	k: 1485224	n:4750000
KS ci ratio: 2.584709e-01	ci left: 4.216824e-05	ci right 5.487558e-05	k: 229	n:4750000
NEB   4750000 perm   10148 sec   (468 perm/sec)   p_kst 4.821053e-05   p_cons 3.126787e-01   p_joint 4.821053e-05

Joint ci ratio: 2.584709e-01	ci left: 4.207965e-05	ci right 5.476029e-05	k: 229	n:4760000
Cons ci ratio: 2.663838e-03	ci left: 3.122676e-01	ci right 3.131007e-01	k: 1488376	n:4760000
KS ci ratio: 2.584709e-01	ci left: 4.207965e-05	ci right 5.476029e-05	k: 229	n:4760000
NEB   4760000 perm   10186 sec   (467 perm/sec)   p_kst 4.810924e-05   p_cons 3.126840e-01   p_joint 4.810924e-05

Joint ci ratio: 2.584709e-01	ci left: 4.199144e-05	ci right 5.464549e-05	k: 229	n:4770000
Cons ci ratio: 2.661022e-03	ci left: 3.122716e-01	ci right 3.131039e-01	k: 1491520	n:4770000
KS ci ratio: 2.584709e-01	ci left: 4.199144e-05	ci right 5.464549e-05	k: 229	n:4770000
NEB   4770000 perm   10225 sec   (467 perm/sec)   p_kst 4.800839e-05   p_cons 3.126876e-01   p_joint 4.800839e-05

Joint ci ratio: 2.579108e-01	ci left: 4.209926e-05	ci right 5.475388e-05	k: 230	n:4780000
Cons ci ratio: 2.658231e-03	ci left: 3.122729e-01	ci right 3.131043e-01	k: 1494651	n:4780000
KS ci ratio: 2.579108e-01	ci left: 4.209926e-05	ci right 5.475388e-05	k: 230	n:4780000
NEB   4780000 perm   10264 sec   (466 perm/sec)   p_kst 4.811715e-05   p_cons 3.126885e-01   p_joint 4.811715e-05

Joint ci ratio: 2.573543e-01	ci left: 4.220665e-05	ci right 5.486179e-05	k: 231	n:4790000
Cons ci ratio: 2.655388e-03	ci left: 3.122842e-01	ci right 3.131148e-01	k: 1497830	n:4790000
KS ci ratio: 2.573543e-01	ci left: 4.220665e-05	ci right 5.486179e-05	k: 231	n:4790000
NEB   4790000 perm   10303 sec   (465 perm/sec)   p_kst 4.822547e-05   p_cons 3.126994e-01   p_joint 4.822547e-05

Joint ci ratio: 2.573544e-01	ci left: 4.211872e-05	ci right 5.474750e-05	k: 231	n:4800000
Cons ci ratio: 2.652667e-03	ci left: 3.122772e-01	ci right 3.131068e-01	k: 1500921	n:4800000
KS ci ratio: 2.573544e-01	ci left: 4.211872e-05	ci right 5.474750e-05	k: 231	n:4800000
NEB   4800000 perm   10341 sec   (464 perm/sec)   p_kst 4.812500e-05   p_cons 3.126919e-01   p_joint 4.812500e-05

Joint ci ratio: 2.568015e-01	ci left: 4.222566e-05	ci right 5.485494e-05	k: 232	n:4810000
Cons ci ratio: 2.650018e-03	ci left: 3.122597e-01	ci right 3.130885e-01	k: 1503962	n:4810000
KS ci ratio: 2.568015e-01	ci left: 4.222566e-05	ci right 5.485494e-05	k: 232	n:4810000
NEB   4810000 perm   10381 sec   (463 perm/sec)   p_kst 4.823285e-05   p_cons 3.126740e-01   p_joint 4.823285e-05

Joint ci ratio: 2.568015e-01	ci left: 4.213806e-05	ci right 5.474114e-05	k: 232	n:4820000
Cons ci ratio: 2.647212e-03	ci left: 3.122691e-01	ci right 3.130971e-01	k: 1507132	n:4820000
KS ci ratio: 2.568015e-01	ci left: 4.213806e-05	ci right 5.474114e-05	k: 232	n:4820000
NEB   4820000 perm   10420 sec   (463 perm/sec)   p_kst 4.813278e-05   p_cons 3.126830e-01   p_joint 4.813278e-05

Joint ci ratio: 2.557064e-01	ci left: 4.243830e-05	ci right 5.506842e-05	k: 234	n:4830000
Cons ci ratio: 2.644539e-03	ci left: 3.122584e-01	ci right 3.130855e-01	k: 1510205	n:4830000
KS ci ratio: 2.557064e-01	ci left: 4.243830e-05	ci right 5.506842e-05	k: 234	n:4830000
NEB   4830000 perm   10459 sec   (462 perm/sec)   p_kst 4.844720e-05   p_cons 3.126718e-01   p_joint 4.844720e-05

Joint ci ratio: 2.546251e-01	ci left: 4.273742e-05	ci right 5.539423e-05	k: 236	n:4840000
Cons ci ratio: 2.641746e-03	ci left: 3.122686e-01	ci right 3.130948e-01	k: 1513379	n:4840000
KS ci ratio: 2.546251e-01	ci left: 4.273742e-05	ci right 5.539423e-05	k: 236	n:4840000
NEB   4840000 perm   10498 sec   (461 perm/sec)   p_kst 4.876033e-05   p_cons 3.126816e-01   p_joint 4.876033e-05

Joint ci ratio: 2.540896e-01	ci left: 4.284234e-05	ci right 5.549932e-05	k: 237	n:4850000
Cons ci ratio: 2.639126e-03	ci left: 3.122520e-01	ci right 3.130773e-01	k: 1516423	n:4850000
KS ci ratio: 2.540896e-01	ci left: 4.284234e-05	ci right 5.549932e-05	k: 237	n:4850000
NEB   4850000 perm   10538 sec   (460 perm/sec)   p_kst 4.886598e-05   p_cons 3.126645e-01   p_joint 4.886598e-05

Joint ci ratio: 2.540896e-01	ci left: 4.275419e-05	ci right 5.538512e-05	k: 237	n:4860000
Cons ci ratio: 2.636414e-03	ci left: 3.122516e-01	ci right 3.130761e-01	k: 1519546	n:4860000
KS ci ratio: 2.540896e-01	ci left: 4.275419e-05	ci right 5.538512e-05	k: 237	n:4860000
NEB   4860000 perm   10578 sec   (459 perm/sec)   p_kst 4.876543e-05   p_cons 3.126638e-01   p_joint 4.876543e-05

Joint ci ratio: 2.540896e-01	ci left: 4.266640e-05	ci right 5.527139e-05	k: 237	n:4870000
Cons ci ratio: 2.633635e-03	ci left: 3.122636e-01	ci right 3.130873e-01	k: 1522729	n:4870000
KS ci ratio: 2.540896e-01	ci left: 4.266640e-05	ci right 5.527139e-05	k: 237	n:4870000
NEB   4870000 perm   10617 sec   (459 perm/sec)   p_kst 4.866530e-05   p_cons 3.126754e-01   p_joint 4.866530e-05

Joint ci ratio: 2.535575e-01	ci left: 4.277085e-05	ci right 5.537606e-05	k: 238	n:4880000
Cons ci ratio: 2.630991e-03	ci left: 3.122549e-01	ci right 3.130777e-01	k: 1525811	n:4880000
KS ci ratio: 2.535575e-01	ci left: 4.277085e-05	ci right 5.537606e-05	k: 238	n:4880000
NEB   4880000 perm   10656 sec   (458 perm/sec)   p_kst 4.877049e-05   p_cons 3.126662e-01   p_joint 4.877049e-05

Joint ci ratio: 2.535575e-01	ci left: 4.268339e-05	ci right 5.526282e-05	k: 238	n:4890000
Cons ci ratio: 2.628329e-03	ci left: 3.122505e-01	ci right 3.130724e-01	k: 1528914	n:4890000
KS ci ratio: 2.535575e-01	ci left: 4.268339e-05	ci right 5.526282e-05	k: 238	n:4890000
NEB   4890000 perm   10696 sec   (457 perm/sec)   p_kst 4.867076e-05   p_cons 3.126613e-01   p_joint 4.867076e-05

Joint ci ratio: 2.535575e-01	ci left: 4.259628e-05	ci right 5.515004e-05	k: 238	n:4900000
Cons ci ratio: 2.625668e-03	ci left: 3.122473e-01	ci right 3.130684e-01	k: 1532023	n:4900000
KS ci ratio: 2.535575e-01	ci left: 4.259628e-05	ci right 5.515004e-05	k: 238	n:4900000
NEB   4900000 perm   10735 sec   (456 perm/sec)   p_kst 4.857143e-05   p_cons 3.126578e-01   p_joint 4.857143e-05

Joint ci ratio: 2.535575e-01	ci left: 4.250952e-05	ci right 5.503771e-05	k: 238	n:4910000
Cons ci ratio: 2.623028e-03	ci left: 3.122419e-01	ci right 3.130622e-01	k: 1535121	n:4910000
KS ci ratio: 2.535575e-01	ci left: 4.250952e-05	ci right 5.503771e-05	k: 238	n:4910000
NEB   4910000 perm   10776 sec   (456 perm/sec)   p_kst 4.847251e-05   p_cons 3.126519e-01   p_joint 4.847251e-05

Joint ci ratio: 2.535575e-01	ci left: 4.242312e-05	ci right 5.492585e-05	k: 238	n:4920000
Cons ci ratio: 2.620293e-03	ci left: 3.122534e-01	ci right 3.130728e-01	k: 1538302	n:4920000
KS ci ratio: 2.535575e-01	ci left: 4.242312e-05	ci right 5.492585e-05	k: 238	n:4920000
NEB   4920000 perm   10816 sec   (455 perm/sec)   p_kst 4.837398e-05   p_cons 3.126630e-01   p_joint 4.837398e-05

Joint ci ratio: 2.535575e-01	ci left: 4.233707e-05	ci right 5.481444e-05	k: 238	n:4930000
Cons ci ratio: 2.617659e-03	ci left: 3.122498e-01	ci right 3.130684e-01	k: 1541409	n:4930000
KS ci ratio: 2.535575e-01	ci left: 4.233707e-05	ci right 5.481444e-05	k: 238	n:4930000
NEB   4930000 perm   10856 sec   (454 perm/sec)   p_kst 4.827586e-05   p_cons 3.126590e-01   p_joint 4.827586e-05

Joint ci ratio: 2.530287e-01	ci left: 4.244095e-05	ci right 5.491873e-05	k: 239	n:4940000
Cons ci ratio: 2.614898e-03	ci left: 3.122683e-01	ci right 3.130861e-01	k: 1544625	n:4940000
KS ci ratio: 2.530287e-01	ci left: 4.244095e-05	ci right 5.491873e-05	k: 239	n:4940000
NEB   4940000 perm   10895 sec   (453 perm/sec)   p_kst 4.838057e-05   p_cons 3.126771e-01   p_joint 4.838057e-05

Joint ci ratio: 2.530288e-01	ci left: 4.235521e-05	ci right 5.480778e-05	k: 239	n:4950000
Cons ci ratio: 2.612329e-03	ci left: 3.122567e-01	ci right 3.130736e-01	k: 1547692	n:4950000
KS ci ratio: 2.530288e-01	ci left: 4.235521e-05	ci right 5.480778e-05	k: 239	n:4950000
NEB   4950000 perm   10937 sec   (453 perm/sec)   p_kst 4.828283e-05   p_cons 3.126651e-01   p_joint 4.828283e-05

Joint ci ratio: 2.530288e-01	ci left: 4.226981e-05	ci right 5.469728e-05	k: 239	n:4960000
Cons ci ratio: 2.609671e-03	ci left: 3.122608e-01	ci right 3.130769e-01	k: 1550837	n:4960000
KS ci ratio: 2.530288e-01	ci left: 4.226981e-05	ci right 5.469728e-05	k: 239	n:4960000
NEB   4960000 perm   10976 sec   (452 perm/sec)   p_kst 4.818548e-05   p_cons 3.126687e-01   p_joint 4.818548e-05

Joint ci ratio: 2.530288e-01	ci left: 4.218476e-05	ci right 5.458723e-05	k: 239	n:4970000
Cons ci ratio: 2.607147e-03	ci left: 3.122444e-01	ci right 3.130597e-01	k: 1553880	n:4970000
KS ci ratio: 2.530288e-01	ci left: 4.218476e-05	ci right 5.458723e-05	k: 239	n:4970000
NEB   4970000 perm   11016 sec   (451 perm/sec)   p_kst 4.808853e-05   p_cons 3.126519e-01   p_joint 4.808853e-05

Joint ci ratio: 2.530288e-01	ci left: 4.210005e-05	ci right 5.447762e-05	k: 239	n:4980000
Cons ci ratio: 2.604442e-03	ci left: 3.122589e-01	ci right 3.130734e-01	k: 1557077	n:4980000
KS ci ratio: 2.530288e-01	ci left: 4.210005e-05	ci right 5.447762e-05	k: 239	n:4980000
NEB   4980000 perm   11056 sec   (450 perm/sec)   p_kst 4.799197e-05   p_cons 3.126661e-01   p_joint 4.799197e-05

Joint ci ratio: 2.525033e-01	ci left: 4.220339e-05	ci right 5.458151e-05	k: 240	n:4990000
Cons ci ratio: 2.601827e-03	ci left: 3.122600e-01	ci right 3.130737e-01	k: 1560207	n:4990000
KS ci ratio: 2.525033e-01	ci left: 4.220339e-05	ci right 5.458151e-05	k: 240	n:4990000
NEB   4990000 perm   11096 sec   (450 perm/sec)   p_kst 4.809619e-05   p_cons 3.126667e-01   p_joint 4.809619e-05

Joint ci ratio: 2.525033e-01	ci left: 4.211899e-05	ci right 5.447235e-05	k: 240	n:5000000
Cons ci ratio: 2.599266e-03	ci left: 3.122535e-01	ci right 3.130663e-01	k: 1563299	n:5000000
KS ci ratio: 2.525033e-01	ci left: 4.211899e-05	ci right 5.447235e-05	k: 240	n:5000000
NEB   5000000 perm   11136 sec   (449 perm/sec)   p_kst 4.800000e-05   p_cons 3.126598e-01   p_joint 4.800000e-05

Outputting figure to mutsig2_images.part000000000113/NEB.2_26407_5000000_4.8e-05_0.31266_4.8e-05.png
                gene_name: NEB
               theta_stop: 0.25 
                    nperm: 5000000 
                     p_ks: 4.80e-05 
        ci_ks_bounds_left: 4.21e-05 
       ci_ks_bounds_right: 5.45e-05 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.31 
                  p_joint: 4.80e-05 
     ci_joint_bounds_left: 4.21e-05 
    ci_joint_bounds_right: 5.45e-05 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000113
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 113 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1723>
Subject: Job 9877646: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1723>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000114> was used as the working directory.
Started at Fri Oct  5 22:48:05 2012
Results reported at Fri Oct  5 22:49:16 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000114.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000114.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 114  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000114.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     60.43 sec.
    Max Memory :      2024 MB
    Max Swap   :      4689 MB

    Max Processes  :         7
    Max Threads    :        71

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
114
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 114
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 114: processing genes 10247 - 10336
Calculating significance of each gene.
Using projection method.
10247	NES	1
10248	NET1	1
10249	NETO1	1
10250	NETO2	1
10251	NEU1	1
10252	NEU2	1
10253	NEU3	1
In gene NEU4 the following bins exceed PROBCAP:
    PRAD-CH-5772	categ 6	N = 1375    n = 1	mu =   3.94e-07
10254	NEU4	6.746296e-02
10255	NEURL	1
10256	NEURL2	1
10257	NEURL4	1.517369e-01
10258	NEUROD1	1
10259	NEUROD2	1.557462e-02
10260	NEUROD4	1
10261	NEUROD6	5.482310e-04
10262	NEUROG1	1
10263	NEUROG2	1
10264	NEUROG3	7.784652e-02
10265	NEXN	1
10266	NF1	5.464711e-01
10267	NF2	5.720561e-02
10268	NFAM1	1
10269	NFASC	1.923760e-01
10270	NFAT5	1
10271	NFATC1	2.698151e-01
10272	NFATC2	1
10273	NFATC2IP	1
10274	NFATC3	1
10275	NFATC4	1
10276	NFE2	1
10277	NFE2L1	9.360890e-02
10278	NFE2L2	1
10279	NFE2L3	1.248206e-01
10280	NFIA	1.674565e-01
10281	NFIB	1
10282	NFIC	1
In gene NFIL3 the following bins exceed PROBCAP:
    PRAD-CH-5792	categ 6	N = 1393    n = 1	mu =   2.67e-07
10283	NFIL3	5.090238e-02
10284	NFIX	1
10285	NFKB1	1
10286	NFKB2	1
10287	NFKBIA	1
10288	NFKBIB	1
10289	NFKBID	1
10290	NFKBIE	1
10291	NFKBIL1	1
10292	NFKBIL2	1
10293	NFKBIZ	1
10294	NFRKB	1
10295	NFS1	1
10296	NFU1	3.361875e-02
10297	NFX1	1
10298	NFXL1	1
10299	NFYA	1
10300	NFYB	1
10301	NFYC	3.971839e-02
10302	NGB	1
10303	NGDN	1
10304	NGEF	1
10305	NGF	1
10306	NGFR	1
10307	NGFRAP1	1
10308	NGLY1	1.927387e-02
10309	NGRN	1
10310	NHEDC1	1
10311	NHEDC2	1
10312	NHEJ1	1
10313	NHLH1	1
10314	NHLH2	1.425751e-02
10315	NHLRC1	1
10316	NHLRC2	1
10317	NHLRC3	1
10318	NHLRC4	1
10319	NHP2	1
10320	NHP2L1	1
10321	NHS	1
10322	NHSL2	1
10323	NICN1	1
10324	NID1	4.099367e-02
10325	NID2	1
10326	NIF3L1	1
10327	NIN	3.149943e-01
10328	NINJ1	1
10329	NINJ2	1
10330	NINL	1.762189e-01
10331	NIP7	1
10332	NIPA1	1
10333	NIPA2	8.423945e-02
10334	NIPAL1	1
10335	NIPAL2	1
10336	NIPAL3	1
Done

Running MutSig 2:
Scatter job 114: processing genes 10247 - 10336
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
NEUROD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.207657e-02	ci left: 5.892161e-01	ci right 6.085262e-01	k: 5989	n:10000
KS ci ratio: 2.035729e-02	ci left: 7.794504e-01	ci right 7.955817e-01	k: 7876	n:10000
NEUROD6   10000 perm   1 sec   (7299 perm/sec)   p_kst 7.876000e-01   p_cons 5.989000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000114/NEUROD6.2_1018_10000_0.7876_0.5989_1.png
                gene_name: NEUROD6
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
NGLY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.750450e-02	ci left: 3.953575e-01	ci right 4.146978e-01	k: 4050	n:10000
Cons ci ratio: 4.967064e-02	ci left: 3.741540e-01	ci right 3.933138e-01	k: 3837	n:10000
KS ci ratio: 6.498281e-02	ci left: 2.580513e-01	ci right 2.754848e-01	k: 2667	n:10000
NGLY1   10000 perm   1 sec   (7078 perm/sec)   p_kst 2.667000e-01   p_cons 3.837000e-01   p_joint 4.050000e-01

Outputting figure to mutsig2_images.part000000000114/NGLY1.2_2118_10000_0.2667_0.3837_0.405.png
                gene_name: NGLY1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 67 percent done.
NID1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.669787e-02	ci left: 6.738786e-01	ci right 6.922147e-01	k: 6831	n:10000
Cons ci ratio: 5.581766e-02	ci left: 3.209831e-01	ci right 3.395159e-01	k: 3302	n:10000
KS ci ratio: 1.228697e-02	ci left: 9.048375e-01	ci right 9.161220e-01	k: 9106	n:10000
NID1   10000 perm   2 sec   (6325 perm/sec)   p_kst 9.106000e-01   p_cons 3.302000e-01   p_joint 6.831000e-01

Outputting figure to mutsig2_images.part000000000114/NID1.2_3824_10000_0.9106_0.3302_0.6831.png
                gene_name: NID1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000114
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 114 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1727>
Subject: Job 9877666: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1727>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000115> was used as the working directory.
Started at Fri Oct  5 22:48:34 2012
Results reported at Fri Oct  5 22:53:26 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000115.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000115.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 115  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000115.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    287.26 sec.
    Max Memory :      1941 MB
    Max Swap   :      4662 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
115
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 115
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 115: processing genes 10337 - 10427
Calculating significance of each gene.
Using projection method.
10337	NIPAL4	1
10338	NIPBL	4.639376e-01
10339	NIPSNAP1	1
10340	NIPSNAP3A	1
10341	NIPSNAP3B	1
10342	NISCH	1
10343	NIT1	1
10344	NIT2	1
10345	NKAIN1	1
10346	NKAIN2	1
10347	NKAIN3	1
10348	NKAIN4	1
10349	NKAP	1
10350	NKAPL	1
10351	NKD1	1
10352	NKD2	1
10353	NKG7	1
10354	NKIRAS1	1
10355	NKIRAS2	1
10356	NKPD1	1
10357	NKRF	1
10358	NKTR	1
10359	NKX2-1	1
10360	NKX2-2	1
10361	NKX2-3	1
In gene NKX2-4 the following bins exceed PROBCAP:
    PRAD-CH-5794	categ 6	N = 158     n = 1	mu =   2.02e-07
10362	NKX2-4	2.618021e-03
10363	NKX2-5	1
10364	NKX2-8	1
In gene NKX3-1 the following bins exceed PROBCAP:
    PRAD-CH-5745	categ 6	N = 601     n = 1	mu =   1.32e-07
10365	NKX3-1	3.617828e-09
10366	NKX3-2	1
10367	NKX6-1	1
10368	NKX6-2	1
10369	NKX6-3	1
10370	NLE1	1
10371	NLGN1	1
10372	NLGN2	1
10373	NLGN3	1
10374	NLGN4X	1
10375	NLGN4Y	1
10376	NLK	1
10377	NLN	1
10378	NLRC3	1
10379	NLRC4	1.358820e-01
10380	NLRC5	1
10381	NLRP1	4.331493e-03
10382	NLRP10	1
10383	NLRP11	1
10384	NLRP12	1
10385	NLRP13	1
10386	NLRP14	1
10387	NLRP2	1
10388	NLRP3	5.383769e-02
10389	NLRP4	2.793003e-01
10390	NLRP5	1
10391	NLRP6	1
10392	NLRP7	1
10393	NLRP8	1
10394	NLRP9	1.707195e-01
10395	NLRX1	1
10396	NMB	1
10397	NMBR	1
10398	NMD3	1
10399	NME1	1
10400	NME1-NME2	1
10401	NME2	1
10402	NME3	1
10403	NME4	1
10404	NME5	1
10405	NME6	1
10406	NME7	1
10407	NMI	1
10408	NMNAT1	1
10409	NMNAT2	1
10410	NMNAT3	1
10411	NMRAL1	1
10412	NMS	1
10413	NMT1	1.070667e-01
10414	NMT2	1
10415	NMU	1
10416	NMUR1	1
10417	NMUR2	1
10418	NNAT	1
10419	NNMT	1
10420	NNT	1
10421	NOB1	1
10422	NOBOX	1
10423	NOC2L	1
10424	NOC3L	1
10425	NOC4L	1
10426	NOD1	1.792286e-01
10427	NOD2	1
Done

Running MutSig 2:
Scatter job 115: processing genes 10337 - 10427
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
NKX3-1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.176417e-01	ci left: 1.261754e-02	ci right 1.747097e-02	k: 149	n:10000
Cons ci ratio: 6.614075e-01	ci left: 2.355713e-03	ci right 4.747948e-03	k: 34	n:10000
KS ci ratio: 1.795348e-01	ci left: 4.140268e-02	ci right 4.966468e-02	k: 454	n:10000
NKX3-1   10000 perm   1 sec   (6785 perm/sec)   p_kst 4.540000e-02   p_cons 3.400000e-03   p_joint 1.490000e-02

Joint ci ratio: 2.082928e-01	ci left: 1.558582e-02	ci right 1.925640e-02	k: 347	n:20000
Cons ci ratio: 4.676974e-01	ci left: 2.685268e-03	ci right 4.364195e-03	k: 69	n:20000
KS ci ratio: 1.263723e-01	ci left: 4.299245e-02	ci right 4.884048e-02	k: 917	n:20000
NKX3-1   20000 perm   5 sec   (3952 perm/sec)   p_kst 4.585000e-02   p_cons 3.450000e-03   p_joint 1.735000e-02

Joint ci ratio: 2.282778e-01	ci left: 8.621951e-03	ci right 1.087452e-02	k: 291	n:30000
Cons ci ratio: 4.015396e-01	ci left: 2.532772e-03	ci right 3.833062e-03	k: 94	n:30000
KS ci ratio: 1.027539e-01	ci left: 4.388449e-02	ci right 4.867054e-02	k: 1387	n:30000
NKX3-1   30000 perm   7 sec   (4355 perm/sec)   p_kst 4.623333e-02   p_cons 3.133333e-03   p_joint 9.700000e-03

Joint ci ratio: 2.165547e-01	ci left: 7.244952e-03	ci right 9.027564e-03	k: 324	n:40000
Cons ci ratio: 3.432433e-01	ci left: 2.693205e-03	ci right 3.830801e-03	k: 129	n:40000
KS ci ratio: 8.798714e-02	ci left: 4.519117e-02	ci right 4.937487e-02	k: 1890	n:40000
NKX3-1   40000 perm   9 sec   (4546 perm/sec)   p_kst 4.725000e-02   p_cons 3.225000e-03   p_joint 8.100000e-03

Joint ci ratio: 2.157326e-01	ci left: 5.852246e-03	ci right 7.285946e-03	k: 327	n:50000
Cons ci ratio: 3.123554e-01	ci left: 2.650208e-03	ci right 3.648858e-03	k: 156	n:50000
KS ci ratio: 7.941947e-02	ci left: 4.461186e-02	ci right 4.832103e-02	k: 2322	n:50000
NKX3-1   50000 perm   11 sec   (4644 perm/sec)   p_kst 4.644000e-02   p_cons 3.120000e-03   p_joint 6.540000e-03

Joint ci ratio: 1.924588e-01	ci left: 6.205638e-03	ci right 7.542730e-03	k: 411	n:60000
Cons ci ratio: 2.950450e-01	ci left: 2.501031e-03	ci right 3.381473e-03	k: 175	n:60000
KS ci ratio: 7.264480e-02	ci left: 4.459950e-02	ci right 4.797790e-02	k: 2776	n:60000
NKX3-1   60000 perm   13 sec   (4588 perm/sec)   p_kst 4.626667e-02   p_cons 2.916667e-03   p_joint 6.850000e-03

Joint ci ratio: 2.002790e-01	ci left: 4.897685e-03	ci right 6.001062e-03	k: 380	n:70000
Cons ci ratio: 2.774842e-01	ci left: 2.448732e-03	ci right 3.250503e-03	k: 198	n:70000
KS ci ratio: 6.711322e-02	ci left: 4.490965e-02	ci right 4.804237e-02	k: 3252	n:70000
NKX3-1   70000 perm   15 sec   (4594 perm/sec)   p_kst 4.645714e-02   p_cons 2.828571e-03   p_joint 5.428571e-03

Joint ci ratio: 1.577186e-01	ci left: 7.057896e-03	ci right 8.278215e-03	k: 612	n:80000
Cons ci ratio: 2.480315e-01	ci left: 2.726646e-03	ci right 3.510075e-03	k: 248	n:80000
KS ci ratio: 6.306132e-02	ci left: 4.462016e-02	ci right 4.753787e-02	k: 3685	n:80000
NKX3-1   80000 perm   17 sec   (4597 perm/sec)   p_kst 4.606250e-02   p_cons 3.100000e-03   p_joint 7.650000e-03

Joint ci ratio: 2.131347e-01	ci left: 3.345405e-03	ci right 4.153766e-03	k: 336	n:90000
Cons ci ratio: 2.427553e-01	ci left: 2.538361e-03	ci right 3.249835e-03	k: 259	n:90000
KS ci ratio: 5.938542e-02	ci left: 4.480479e-02	ci right 4.755789e-02	k: 4155	n:90000
NKX3-1   90000 perm   20 sec   (4580 perm/sec)   p_kst 4.616667e-02   p_cons 2.877778e-03   p_joint 3.733333e-03

Joint ci ratio: 1.504823e-01	ci left: 6.232604e-03	ci right 7.256321e-03	k: 673	n:100000
Cons ci ratio: 2.335176e-01	ci left: 2.481990e-03	ci right 3.147369e-03	k: 280	n:100000
KS ci ratio: 5.619637e-02	ci left: 4.509457e-02	ci right 4.771182e-02	k: 4639	n:100000
NKX3-1   100000 perm   22 sec   (4542 perm/sec)   p_kst 4.639000e-02   p_cons 2.800000e-03   p_joint 6.730000e-03

Joint ci ratio: 1.345735e-01	ci left: 7.139185e-03	ci right 8.177936e-03	k: 841	n:110000
Cons ci ratio: 2.234128e-01	ci left: 2.479195e-03	ci right 3.111109e-03	k: 306	n:110000
KS ci ratio: 5.355915e-02	ci left: 4.519129e-02	ci right 4.768724e-02	k: 5107	n:110000
NKX3-1   110000 perm   24 sec   (4501 perm/sec)   p_kst 4.642727e-02   p_cons 2.781818e-03   p_joint 7.645455e-03

Joint ci ratio: 1.451441e-01	ci left: 5.602989e-03	ci right 6.487805e-03	k: 724	n:120000
Cons ci ratio: 2.151644e-01	ci left: 2.461611e-03	ci right 3.062819e-03	k: 330	n:120000
KS ci ratio: 5.132424e-02	ci left: 4.516727e-02	ci right 4.755471e-02	k: 5562	n:120000
NKX3-1   120000 perm   27 sec   (4456 perm/sec)   p_kst 4.635000e-02   p_cons 2.750000e-03   p_joint 6.033333e-03

Joint ci ratio: 1.337767e-01	ci left: 6.122407e-03	ci right 7.007512e-03	k: 852	n:130000
Cons ci ratio: 2.068922e-01	ci left: 2.468977e-03	ci right 3.045867e-03	k: 357	n:130000
KS ci ratio: 5.061740e-02	ci left: 4.298264e-02	ci right 4.522237e-02	k: 5732	n:130000
NKX3-1   130000 perm   29 sec   (4410 perm/sec)   p_kst 4.409231e-02   p_cons 2.746154e-03   p_joint 6.553846e-03

Joint ci ratio: 1.103779e-01	ci left: 8.435493e-03	ci right 9.427863e-03	k: 1249	n:140000
Cons ci ratio: 1.855296e-01	ci left: 2.883664e-03	ci right 3.480064e-03	k: 444	n:140000
KS ci ratio: 4.876789e-02	ci left: 4.303744e-02	ci right 4.519578e-02	k: 6175	n:140000
NKX3-1   140000 perm   32 sec   (4344 perm/sec)   p_kst 4.410714e-02   p_cons 3.171429e-03   p_joint 8.921429e-03

Joint ci ratio: 1.063266e-01	ci left: 8.502286e-03	ci right 9.463504e-03	k: 1346	n:150000
Cons ci ratio: 1.788226e-01	ci left: 2.907755e-03	ci right 3.485046e-03	k: 478	n:150000
KS ci ratio: 4.706274e-02	ci left: 4.316533e-02	ci right 4.525233e-02	k: 6630	n:150000
NKX3-1   150000 perm   35 sec   (4287 perm/sec)   p_kst 4.420000e-02   p_cons 3.186667e-03   p_joint 8.973333e-03

Joint ci ratio: 1.212166e-01	ci left: 6.099958e-03	ci right 6.893084e-03	k: 1038	n:160000
Cons ci ratio: 1.741617e-01	ci left: 2.881339e-03	ci right 3.436906e-03	k: 504	n:160000
KS ci ratio: 4.550799e-02	ci left: 4.330929e-02	ci right 4.533226e-02	k: 7090	n:160000
NKX3-1   160000 perm   38 sec   (4244 perm/sec)   p_kst 4.431250e-02   p_cons 3.150000e-03   p_joint 6.487500e-03

Joint ci ratio: 1.199118e-01	ci left: 5.872309e-03	ci right 6.627032e-03	k: 1061	n:170000
Cons ci ratio: 1.700078e-01	ci left: 2.852570e-03	ci right 3.388127e-03	k: 529	n:170000
KS ci ratio: 4.409473e-02	ci left: 4.344314e-02	ci right 4.540773e-02	k: 7551	n:170000
NKX3-1   170000 perm   41 sec   (4196 perm/sec)   p_kst 4.441765e-02   p_cons 3.111765e-03   p_joint 6.241176e-03

Joint ci ratio: 1.238655e-01	ci left: 5.190465e-03	ci right 5.881162e-03	k: 995	n:180000
Cons ci ratio: 1.668933e-01	ci left: 2.800514e-03	ci right 3.315697e-03	k: 549	n:180000
KS ci ratio: 4.275242e-02	ci left: 4.366745e-02	ci right 4.558059e-02	k: 8031	n:180000
NKX3-1   180000 perm   43 sec   (4140 perm/sec)   p_kst 4.461667e-02   p_cons 3.050000e-03   p_joint 5.527778e-03

Joint ci ratio: 1.015668e-01	ci left: 7.383674e-03	ci right 8.178822e-03	k: 1477	n:190000
Cons ci ratio: 1.731768e-01	ci left: 2.456550e-03	ci right 2.927249e-03	k: 510	n:190000
KS ci ratio: 4.156400e-02	ci left: 4.379078e-02	ci right 4.565472e-02	k: 8496	n:190000
NKX3-1   190000 perm   46 sec   (4090 perm/sec)   p_kst 4.471579e-02   p_cons 2.684211e-03   p_joint 7.773684e-03

Joint ci ratio: 9.947274e-02	ci left: 7.321559e-03	ci right 8.092812e-03	k: 1540	n:200000
Cons ci ratio: 1.694080e-01	ci left: 2.443791e-03	ci right 2.900814e-03	k: 533	n:200000
KS ci ratio: 4.052394e-02	ci left: 4.378856e-02	ci right 4.560467e-02	k: 8938	n:200000
NKX3-1   200000 perm   50 sec   (4040 perm/sec)   p_kst 4.469000e-02   p_cons 2.665000e-03   p_joint 7.700000e-03

Joint ci ratio: 9.942616e-02	ci left: 6.982140e-03	ci right 7.717271e-03	k: 1542	n:210000
Cons ci ratio: 1.660244e-01	ci left: 2.427783e-03	ci right 2.871837e-03	k: 555	n:210000
KS ci ratio: 3.957812e-02	ci left: 4.374462e-02	ci right 4.551560e-02	k: 9371	n:210000
NKX3-1   210000 perm   53 sec   (3991 perm/sec)   p_kst 4.462381e-02   p_cons 2.642857e-03   p_joint 7.342857e-03

Joint ci ratio: 9.736729e-02	ci left: 6.957383e-03	ci right 7.673872e-03	k: 1608	n:220000
Cons ci ratio: 1.625541e-01	ci left: 2.422034e-03	ci right 2.854872e-03	k: 579	n:220000
KS ci ratio: 3.873072e-02	ci left: 4.362857e-02	ci right 4.535618e-02	k: 9787	n:220000
NKX3-1   220000 perm   56 sec   (3943 perm/sec)   p_kst 4.448636e-02   p_cons 2.631818e-03   p_joint 7.309091e-03

Joint ci ratio: 9.543124e-02	ci left: 6.934922e-03	ci right 7.634103e-03	k: 1674	n:230000
Cons ci ratio: 1.591606e-01	ci left: 2.421048e-03	ci right 2.843815e-03	k: 604	n:230000
KS ci ratio: 3.786567e-02	ci left: 4.367809e-02	ci right 4.536819e-02	k: 10239	n:230000
NKX3-1   230000 perm   59 sec   (3896 perm/sec)   p_kst 4.451739e-02   p_cons 2.626087e-03   p_joint 7.278261e-03

Joint ci ratio: 9.320266e-02	ci left: 6.975513e-03	ci right 7.661466e-03	k: 1755	n:240000
Cons ci ratio: 1.551095e-01	ci left: 2.448265e-03	ci right 2.863891e-03	k: 636	n:240000
KS ci ratio: 3.704341e-02	ci left: 4.375279e-02	ci right 4.540823e-02	k: 10698	n:240000
NKX3-1   240000 perm   63 sec   (3835 perm/sec)   p_kst 4.457500e-02   p_cons 2.650000e-03   p_joint 7.312500e-03

Joint ci ratio: 9.226863e-02	ci left: 6.837130e-03	ci right 7.502373e-03	k: 1791	n:250000
Cons ci ratio: 1.512394e-01	ci left: 2.477278e-03	ci right 2.886387e-03	k: 669	n:250000
KS ci ratio: 3.630486e-02	ci left: 4.374653e-02	ci right 4.536805e-02	k: 11138	n:250000
NKX3-1   250000 perm   66 sec   (3790 perm/sec)   p_kst 4.455200e-02   p_cons 2.676000e-03   p_joint 7.164000e-03

Joint ci ratio: 9.711927e-02	ci left: 5.924389e-03	ci right 6.532851e-03	k: 1618	n:260000
Cons ci ratio: 1.491418e-01	ci left: 2.452327e-03	ci right 2.851196e-03	k: 688	n:260000
KS ci ratio: 3.557023e-02	ci left: 4.383258e-02	ci right 4.542374e-02	k: 11602	n:260000
NKX3-1   260000 perm   69 sec   (3744 perm/sec)   p_kst 4.462308e-02   p_cons 2.646154e-03   p_joint 6.223077e-03

Joint ci ratio: 9.545444e-02	ci left: 5.910993e-03	ci right 6.507089e-03	k: 1675	n:270000
Cons ci ratio: 1.467141e-01	ci left: 2.443531e-03	ci right 2.833934e-03	k: 711	n:270000
KS ci ratio: 3.488300e-02	ci left: 4.390155e-02	ci right 4.546380e-02	k: 12063	n:270000
NKX3-1   270000 perm   73 sec   (3701 perm/sec)   p_kst 4.467778e-02   p_cons 2.633333e-03   p_joint 6.203704e-03

Joint ci ratio: 9.368219e-02	ci left: 5.923053e-03	ci right 6.508667e-03	k: 1739	n:280000
Cons ci ratio: 1.440089e-01	ci left: 2.449184e-03	ci right 2.832654e-03	k: 738	n:280000
KS ci ratio: 3.426563e-02	ci left: 4.388793e-02	ci right 4.542151e-02	k: 12502	n:280000
NKX3-1   280000 perm   77 sec   (3657 perm/sec)   p_kst 4.465000e-02   p_cons 2.635714e-03   p_joint 6.210714e-03

Joint ci ratio: 9.361115e-02	ci left: 5.728885e-03	ci right 6.294848e-03	k: 1742	n:290000
Cons ci ratio: 1.414479e-01	ci left: 2.454509e-03	ci right 2.831402e-03	k: 765	n:290000
KS ci ratio: 3.364863e-02	ci left: 4.395415e-02	ci right 4.546186e-02	k: 12964	n:290000
NKX3-1   290000 perm   80 sec   (3609 perm/sec)   p_kst 4.470345e-02   p_cons 2.637931e-03   p_joint 6.006897e-03

Joint ci ratio: 9.324466e-02	ci left: 5.583479e-03	ci right 6.132799e-03	k: 1756	n:300000
Cons ci ratio: 1.391951e-01	ci left: 2.453099e-03	ci right 2.823279e-03	k: 790	n:300000
KS ci ratio: 3.310642e-02	ci left: 4.390706e-02	ci right 4.538842e-02	k: 13393	n:300000
NKX3-1   300000 perm   84 sec   (3563 perm/sec)   p_kst 4.464333e-02   p_cons 2.633333e-03   p_joint 5.853333e-03

Joint ci ratio: 9.325353e-02	ci left: 5.403344e-03	ci right 5.934994e-03	k: 1756	n:310000
Cons ci ratio: 1.373845e-01	ci left: 2.439364e-03	ci right 2.802292e-03	k: 811	n:310000
KS ci ratio: 3.252317e-02	ci left: 4.403603e-02	ci right 4.549508e-02	k: 13876	n:310000
NKX3-1   310000 perm   88 sec   (3513 perm/sec)   p_kst 4.476129e-02   p_cons 2.616129e-03   p_joint 5.664516e-03

Joint ci ratio: 9.210919e-02	ci left: 5.368798e-03	ci right 5.890217e-03	k: 1800	n:320000
Cons ci ratio: 1.348338e-01	ci left: 2.456712e-03	ci right 2.814890e-03	k: 842	n:320000
KS ci ratio: 3.200353e-02	ci left: 4.406722e-02	ci right 4.550354e-02	k: 14330	n:320000
NKX3-1   320000 perm   92 sec   (3467 perm/sec)   p_kst 4.478125e-02   p_cons 2.631250e-03   p_joint 5.625000e-03

Joint ci ratio: 9.295106e-02	ci left: 5.111350e-03	ci right 5.612548e-03	k: 1768	n:330000
Cons ci ratio: 1.327249e-01	ci left: 2.461346e-03	ci right 2.814145e-03	k: 869	n:330000
KS ci ratio: 3.150357e-02	ci left: 4.410872e-02	ci right 4.552353e-02	k: 14788	n:330000
NKX3-1   330000 perm   96 sec   (3421 perm/sec)   p_kst 4.481212e-02   p_cons 2.633333e-03   p_joint 5.357576e-03

Joint ci ratio: 9.186847e-02	ci left: 5.081687e-03	ci right 5.573861e-03	k: 1810	n:340000
Cons ci ratio: 1.313745e-01	ci left: 2.440144e-03	ci right 2.786067e-03	k: 887	n:340000
KS ci ratio: 3.107330e-02	ci left: 4.401949e-02	ci right 4.541181e-02	k: 15202	n:340000
NKX3-1   340000 perm   101 sec   (3378 perm/sec)   p_kst 4.471176e-02   p_cons 2.608824e-03   p_joint 5.323529e-03

Joint ci ratio: 9.069990e-02	ci left: 5.067714e-03	ci right 5.551961e-03	k: 1857	n:350000
Cons ci ratio: 1.293507e-01	ci left: 2.447817e-03	ci right 2.789072e-03	k: 915	n:350000
KS ci ratio: 3.062838e-02	ci left: 4.402341e-02	ci right 4.539557e-02	k: 15647	n:350000
NKX3-1   350000 perm   105 sec   (3336 perm/sec)   p_kst 4.470571e-02   p_cons 2.614286e-03   p_joint 5.305714e-03

Joint ci ratio: 9.244821e-02	ci left: 4.739629e-03	ci right 5.201727e-03	k: 1788	n:360000
Cons ci ratio: 1.277572e-01	ci left: 2.441656e-03	ci right 2.777541e-03	k: 938	n:360000
KS ci ratio: 3.023253e-02	ci left: 4.394176e-02	ci right 4.529336e-02	k: 16061	n:360000
NKX3-1   360000 perm   109 sec   (3295 perm/sec)   p_kst 4.461389e-02   p_cons 2.605556e-03   p_joint 4.966667e-03

Joint ci ratio: 8.610602e-02	ci left: 5.330340e-03	ci right 5.812588e-03	k: 2060	n:370000
Cons ci ratio: 1.257634e-01	ci left: 2.454177e-03	ci right 2.786122e-03	k: 968	n:370000
KS ci ratio: 2.982040e-02	ci left: 4.395319e-02	ci right 4.528639e-02	k: 16508	n:370000
NKX3-1   370000 perm   114 sec   (3250 perm/sec)   p_kst 4.461622e-02   p_cons 2.616216e-03   p_joint 5.567568e-03

Joint ci ratio: 8.514169e-02	ci left: 5.311101e-03	ci right 5.785960e-03	k: 2107	n:380000
Cons ci ratio: 1.248030e-01	ci left: 2.427827e-03	ci right 2.753516e-03	k: 983	n:380000
KS ci ratio: 2.941832e-02	ci left: 4.398242e-02	ci right 4.529822e-02	k: 16962	n:380000
NKX3-1   380000 perm   118 sec   (3212 perm/sec)   p_kst 4.463684e-02   p_cons 2.586842e-03   p_joint 5.544737e-03

Joint ci ratio: 8.531069e-02	ci left: 5.154826e-03	ci right 5.616672e-03	k: 2099	n:390000
Cons ci ratio: 1.234930e-01	ci left: 2.417749e-03	ci right 2.738431e-03	k: 1004	n:390000
KS ci ratio: 2.903382e-02	ci left: 4.400518e-02	ci right 4.530416e-02	k: 17414	n:390000
NKX3-1   390000 perm   123 sec   (3178 perm/sec)   p_kst 4.465128e-02   p_cons 2.574359e-03   p_joint 5.382051e-03

Joint ci ratio: 8.403863e-02	ci left: 5.182570e-03	ci right 5.639639e-03	k: 2163	n:400000
Cons ci ratio: 1.216894e-01	ci left: 2.430006e-03	ci right 2.747268e-03	k: 1034	n:400000
KS ci ratio: 2.864556e-02	ci left: 4.408153e-02	ci right 4.536508e-02	k: 17888	n:400000
NKX3-1   400000 perm   127 sec   (3144 perm/sec)   p_kst 4.472000e-02   p_cons 2.585000e-03   p_joint 5.407500e-03

Joint ci ratio: 8.285921e-02	ci left: 5.204232e-03	ci right 5.656459e-03	k: 2225	n:410000
Cons ci ratio: 1.199626e-01	ci left: 2.441698e-03	ci right 2.755642e-03	k: 1064	n:410000
KS ci ratio: 2.830799e-02	ci left: 4.404767e-02	ci right 4.531487e-02	k: 18318	n:410000
NKX3-1   410000 perm   132 sec   (3112 perm/sec)   p_kst 4.467805e-02   p_cons 2.595122e-03   p_joint 5.426829e-03

Joint ci ratio: 6.899931e-02	ci left: 7.362965e-03	ci right 7.891481e-03	k: 3202	n:420000
Cons ci ratio: 1.181452e-01	ci left: 2.459795e-03	ci right 2.770940e-03	k: 1097	n:420000
KS ci ratio: 2.813795e-02	ci left: 4.354724e-02	ci right 4.479240e-02	k: 18550	n:420000
NKX3-1   420000 perm   136 sec   (3080 perm/sec)   p_kst 4.416667e-02   p_cons 2.611905e-03   p_joint 7.623810e-03

Joint ci ratio: 6.890800e-02	ci left: 7.212283e-03	ci right 7.729271e-03	k: 3211	n:430000
Cons ci ratio: 1.168750e-01	ci left: 2.456763e-03	ci right 2.763953e-03	k: 1121	n:430000
KS ci ratio: 2.782087e-02	ci left: 4.351827e-02	ci right 4.474835e-02	k: 18976	n:430000
NKX3-1   430000 perm   141 sec   (3047 perm/sec)   p_kst 4.413023e-02   p_cons 2.606977e-03   p_joint 7.467442e-03

Joint ci ratio: 6.849624e-02	ci left: 7.135471e-03	ci right 7.643775e-03	k: 3250	n:440000
Cons ci ratio: 1.156450e-01	ci left: 2.453887e-03	ci right 2.757268e-03	k: 1145	n:440000
KS ci ratio: 2.750685e-02	ci left: 4.351327e-02	ci right 4.472911e-02	k: 19412	n:440000
NKX3-1   440000 perm   146 sec   (3016 perm/sec)   p_kst 4.411818e-02   p_cons 2.602273e-03   p_joint 7.386364e-03

Joint ci ratio: 6.789449e-02	ci left: 7.103592e-03	ci right 7.605004e-03	k: 3308	n:450000
Cons ci ratio: 1.146497e-01	ci left: 2.442520e-03	ci right 2.741720e-03	k: 1165	n:450000
KS ci ratio: 2.718390e-02	ci left: 4.356818e-02	ci right 4.477104e-02	k: 19875	n:450000
NKX3-1   450000 perm   151 sec   (2984 perm/sec)   p_kst 4.416667e-02   p_cons 2.588889e-03   p_joint 7.351111e-03

Joint ci ratio: 6.937219e-02	ci left: 6.654261e-03	ci right 7.134590e-03	k: 3170	n:460000
Cons ci ratio: 1.133924e-01	ci left: 2.444331e-03	ci right 2.740250e-03	k: 1191	n:460000
KS ci ratio: 2.688589e-02	ci left: 4.357758e-02	ci right 4.476730e-02	k: 20318	n:460000
NKX3-1   460000 perm   156 sec   (2949 perm/sec)   p_kst 4.416957e-02   p_cons 2.589130e-03   p_joint 6.891304e-03

Joint ci ratio: 6.956530e-02	ci left: 6.477119e-03	ci right 6.946015e-03	k: 3153	n:470000
Cons ci ratio: 1.120374e-01	ci left: 2.452287e-03	ci right 2.745387e-03	k: 1220	n:470000
KS ci ratio: 2.660082e-02	ci left: 4.357608e-02	ci right 4.475296e-02	k: 20756	n:470000
NKX3-1   470000 perm   161 sec   (2918 perm/sec)   p_kst 4.416170e-02   p_cons 2.595745e-03   p_joint 6.708511e-03

Joint ci ratio: 7.255969e-02	ci left: 5.824386e-03	ci right 6.264942e-03	k: 2900	n:480000
Cons ci ratio: 1.107742e-01	ci left: 2.457906e-03	ci right 2.748150e-03	k: 1248	n:480000
KS ci ratio: 2.633049e-02	ci left: 4.355607e-02	ci right 4.472027e-02	k: 21185	n:480000
NKX3-1   480000 perm   166 sec   (2888 perm/sec)   p_kst 4.413542e-02   p_cons 2.600000e-03   p_joint 6.041667e-03

Joint ci ratio: 6.582436e-02	ci left: 6.949110e-03	ci right 7.424092e-03	k: 3520	n:490000
Cons ci ratio: 1.093384e-01	ci left: 2.473239e-03	ci right 2.761264e-03	k: 1281	n:490000
KS ci ratio: 2.602606e-02	ci left: 4.367282e-02	ci right 4.482645e-02	k: 21681	n:490000
NKX3-1   490000 perm   171 sec   (2859 perm/sec)   p_kst 4.424694e-02   p_cons 2.614286e-03   p_joint 7.183673e-03

Joint ci ratio: 6.669297e-02	ci left: 6.633075e-03	ci right 7.092668e-03	k: 3430	n:500000
Cons ci ratio: 1.082463e-01	ci left: 2.474359e-03	ci right 2.759453e-03	k: 1307	n:500000
KS ci ratio: 2.575321e-02	ci left: 4.371541e-02	ci right 4.485788e-02	k: 22142	n:500000
NKX3-1   500000 perm   177 sec   (2827 perm/sec)   p_kst 4.428400e-02   p_cons 2.614000e-03   p_joint 6.860000e-03

Joint ci ratio: 6.661934e-02	ci left: 6.518426e-03	ci right 6.969558e-03	k: 3438	n:510000
Cons ci ratio: 1.073073e-01	ci left: 2.469724e-03	ci right 2.751660e-03	k: 1330	n:510000
KS ci ratio: 2.549822e-02	ci left: 4.372521e-02	ci right 4.485645e-02	k: 22587	n:510000
NKX3-1   510000 perm   182 sec   (2799 perm/sec)   p_kst 4.428824e-02   p_cons 2.607843e-03   p_joint 6.741176e-03

Joint ci ratio: 6.602717e-02	ci left: 6.510324e-03	ci right 6.956736e-03	k: 3500	n:520000
Cons ci ratio: 1.061176e-01	ci left: 2.478383e-03	ci right 2.757974e-03	k: 1360	n:520000
KS ci ratio: 2.524320e-02	ci left: 4.375953e-02	ci right 4.488017e-02	k: 23045	n:520000
NKX3-1   520000 perm   188 sec   (2773 perm/sec)   p_kst 4.431731e-02   p_cons 2.615385e-03   p_joint 6.730769e-03

Joint ci ratio: 6.779857e-02	ci left: 6.055354e-03	ci right 6.482146e-03	k: 3321	n:530000
Cons ci ratio: 1.051944e-01	ci left: 2.475707e-03	ci right 2.752416e-03	k: 1384	n:530000
KS ci ratio: 2.499568e-02	ci left: 4.379261e-02	ci right 4.490295e-02	k: 23503	n:530000
NKX3-1   530000 perm   193 sec   (2745 perm/sec)   p_kst 4.434528e-02   p_cons 2.611321e-03   p_joint 6.266038e-03

Joint ci ratio: 6.750668e-02	ci left: 5.996007e-03	ci right 6.416725e-03	k: 3350	n:540000
Cons ci ratio: 1.041467e-01	ci left: 2.480355e-03	ci right 2.754654e-03	k: 1412	n:540000
KS ci ratio: 2.475151e-02	ci left: 4.383740e-02	ci right 4.493786e-02	k: 23968	n:540000
NKX3-1   540000 perm   199 sec   (2720 perm/sec)   p_kst 4.438519e-02   p_cons 2.614815e-03   p_joint 6.203704e-03

Joint ci ratio: 6.725854e-02	ci left: 5.931671e-03	ci right 6.346285e-03	k: 3375	n:550000
Cons ci ratio: 1.034904e-01	ci left: 2.467135e-03	ci right 2.738147e-03	k: 1430	n:550000
KS ci ratio: 2.453960e-02	ci left: 4.379386e-02	ci right 4.488368e-02	k: 24385	n:550000
NKX3-1   550000 perm   204 sec   (2694 perm/sec)   p_kst 4.433636e-02   p_cons 2.600000e-03   p_joint 6.136364e-03

Joint ci ratio: 6.686488e-02	ci left: 5.895975e-03	ci right 6.305588e-03	k: 3415	n:560000
Cons ci ratio: 1.026335e-01	ci left: 2.464831e-03	ci right 2.733213e-03	k: 1454	n:560000
KS ci ratio: 2.433715e-02	ci left: 4.373770e-02	ci right 4.481702e-02	k: 24794	n:560000
NKX3-1   560000 perm   210 sec   (2670 perm/sec)   p_kst 4.427500e-02   p_cons 2.596429e-03   p_joint 6.098214e-03

Joint ci ratio: 6.629494e-02	ci left: 5.894322e-03	ci right 6.300196e-03	k: 3474	n:570000
Cons ci ratio: 1.015912e-01	ci left: 2.472876e-03	ci right 2.739237e-03	k: 1484	n:570000
KS ci ratio: 2.412211e-02	ci left: 4.374460e-02	ci right 4.481442e-02	k: 25238	n:570000
NKX3-1   570000 perm   216 sec   (2642 perm/sec)   p_kst 4.427719e-02   p_cons 2.603509e-03   p_joint 6.094737e-03

Joint ci ratio: 6.687196e-02	ci left: 5.692646e-03	ci right 6.088176e-03	k: 3415	n:580000
Cons ci ratio: 1.008137e-01	ci left: 2.468892e-03	ci right 2.732668e-03	k: 1507	n:580000
KS ci ratio: 2.391413e-02	ci left: 4.374616e-02	ci right 4.480667e-02	k: 25679	n:580000
NKX3-1   580000 perm   222 sec   (2617 perm/sec)   p_kst 4.427414e-02   p_cons 2.598276e-03   p_joint 5.887931e-03

Joint ci ratio: 6.630184e-02	ci left: 5.694495e-03	ci right 6.086651e-03	k: 3474	n:590000
Cons ci ratio: 9.995573e-02	ci left: 2.470007e-03	ci right 2.731525e-03	k: 1533	n:590000
KS ci ratio: 2.372141e-02	ci left: 4.371232e-02	ci right 4.476335e-02	k: 26099	n:590000
NKX3-1   590000 perm   228 sec   (2593 perm/sec)   p_kst 4.423559e-02   p_cons 2.598305e-03   p_joint 5.888136e-03

Outputting figure to mutsig2_images.part000000000115/NKX3-1.5_713_590000_0.044236_0.0025983_0.0058881.png
                gene_name: NKX3-1
               theta_stop: 0.100 
                    nperm: 590000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.0026 
      ci_cons_bounds_left: 0.0025 
     ci_cons_bounds_right: 0.0027 
                  p_joint: 0.0059 
     ci_joint_bounds_left: 0.0057 
    ci_joint_bounds_right: 0.0061 

Current progress: 33 percent done.
NLRP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.297202e-02	ci left: 5.758711e-01	ci right 5.952790e-01	k: 5856	n:10000
Cons ci ratio: 5.871592e-02	ci left: 2.991568e-01	ci right 3.173550e-01	k: 3082	n:10000
KS ci ratio: 8.962374e-03	ci left: 9.459616e-01	ci right 9.545737e-01	k: 9504	n:10000
NLRP1   10000 perm   2 sec   (5441 perm/sec)   p_kst 9.504000e-01   p_cons 3.082000e-01   p_joint 5.856000e-01

Outputting figure to mutsig2_images.part000000000115/NLRP1.3_4565_10000_0.9504_0.3082_0.5856.png
                gene_name: NLRP1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 67 percent done.
NLRP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.590375e-02	ci left: 8.517184e-01	ci right 8.654720e-01	k: 8587	n:10000
Cons ci ratio: 2.974911e-02	ci left: 6.249733e-01	ci right 6.439483e-01	k: 6345	n:10000
KS ci ratio: 5.104208e-02	ci left: 3.614212e-01	ci right 3.804540e-01	k: 3709	n:10000
NLRP3   10000 perm   2 sec   (6198 perm/sec)   p_kst 3.709000e-01   p_cons 6.345000e-01   p_joint 8.587000e-01

Outputting figure to mutsig2_images.part000000000115/NLRP3.2_3147_10000_0.3709_0.6345_0.8587.png
                gene_name: NLRP3
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000115
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 115 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1652>
Subject: Job 9877680: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1652>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000116> was used as the working directory.
Started at Fri Oct  5 22:48:58 2012
Results reported at Fri Oct  5 22:50:34 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000116.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000116.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 116  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000116.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     96.90 sec.
    Max Memory :      2037 MB
    Max Swap   :      4656 MB

    Max Processes  :         7
    Max Threads    :        60

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
116
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 116
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 116: processing genes 10428 - 10518
Calculating significance of each gene.
Using projection method.
10428	NODAL	1
10429	NOG	1
10430	NOL10	1
10431	NOL11	1
10432	NOL12	1
10433	NOL3	1
10434	NOL4	1
10435	NOL6	1
10436	NOL7	1
10437	NOL8	1.152040e-01
10438	NOL9	1
10439	NOLC1	1
10440	NOM1	1
10441	NOMO1	1
10442	NOMO2	1.007182e-01
10443	NOMO3	7.456788e-02
10444	NONO	1
10445	NOP10	1
10446	NOP14	1
10447	NOP16	1
10448	NOP2	1
10449	NOP56	1
In gene NOP58 the following bins exceed PROBCAP:
    PRAD-G9-6367	categ 6	N = 1650    n = 1	mu =   6.65e-08
10450	NOP58	1.965378e-02
10451	NOS1	1
10452	NOS1AP	1
10453	NOS2	1
10454	NOS3	1
10455	NOSIP	1
10456	NOSTRIN	1
10457	NOTCH1	1
10458	NOTCH2	9.994539e-02
10459	NOTCH2NL	6.075605e-05
10460	NOTCH3	1
10461	NOTCH4	1
10462	NOTUM	1
10463	NOV	1
10464	NOVA1	4.938961e-02
10465	NOVA2	1
10466	NOX1	1
10467	NOX3	4.382544e-02
10468	NOX4	1
10469	NOX5	2.101155e-01
10470	NOXA1	1
10471	NOXO1	1
10472	NPAS1	1
10473	NPAS2	1.104010e-01
10474	NPAS3	1
10475	NPAS4	1
10476	NPAT	1.089161e-01
10477	NPB	1
10478	NPBWR1	1
10479	NPBWR2	1
10480	NPC1	1
10481	NPC1L1	3.164065e-01
10482	NPC2	1
10483	NPDC1	1
10484	NPEPL1	1
10485	NPEPPS	1
10486	NPFF	1
10487	NPFFR1	1
10488	NPFFR2	1
10489	NPHP1	1
10490	NPHP3	1
10491	NPHP4	1
10492	NPHS1	1
10493	NPHS2	1
10494	NPIP	1
10495	NPL	1
10496	NPLOC4	1
10497	NPM1	1
10498	NPM2	1
10499	NPM3	1
10500	NPNT	1
10501	NPPA	1
10502	NPPB	1
10503	NPPC	1
10504	NPR1	1
10505	NPR2	3.041452e-01
10506	NPR3	1
10507	NPRL2	1
10508	NPRL3	1
10509	NPS	1
10510	NPSR1	1
10511	NPTN	1
10512	NPTX1	1.451908e-01
10513	NPTX2	1
10514	NPTXR	1
10515	NPVF	1
10516	NPW	1
10517	NPY	1
10518	NPY1R	1
Done

Running MutSig 2:
Scatter job 116: processing genes 10428 - 10518
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
NOTCH2NL
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 50 percent done.
NOTCH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.138321e-03	ci left: 9.804856e-01	ci right 9.856275e-01	k: 9832	n:10000
KS ci ratio: 9.829904e-02	ci left: 1.304150e-01	ci right 1.439971e-01	k: 1371	n:10000
NOTCH2   10000 perm   3 sec   (3641 perm/sec)   p_kst 1.371000e-01   p_cons 9.832000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000116/NOTCH2.2_7552_10000_0.1371_0.9832_1.png
                gene_name: NOTCH2
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000116
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 116 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1640>
Subject: Job 9877692: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1640>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000117> was used as the working directory.
Started at Fri Oct  5 22:49:40 2012
Results reported at Fri Oct  5 22:51:20 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000117.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000117.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 117  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000117.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    101.82 sec.
    Max Memory :      1734 MB
    Max Swap   :      4548 MB

    Max Processes  :         7
    Max Threads    :        55

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
117
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 117
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 117: processing genes 10519 - 10608
Calculating significance of each gene.
Using projection method.
10519	NPY2R	1
10520	NPY5R	1
10521	NQO1	1
10522	NQO2	1
10523	NR0B1	1
10524	NR0B2	1
10525	NR1D1	1
10526	NR1D2	1.454479e-01
10527	NR1H2	1
10528	NR1H3	1
10529	NR1H4	1
10530	NR1I2	1.981278e-02
10531	NR1I3	1
10532	NR2C1	1
10533	NR2C2	1
10534	NR2C2AP	1
10535	NR2E1	1
10536	NR2E3	1
10537	NR2F1	1.334401e-01
10538	NR2F2	1
10539	NR2F6	1
10540	NR3C1	1
10541	NR3C2	1
10542	NR4A1	1
10543	NR4A2	1
10544	NR4A3	1
10545	NR5A1	1
10546	NR5A2	1
10547	NR6A1	3.833922e-02
10548	NRAP	3.768893e-01
10549	NRARP	1
10550	NRAS	1
10551	NRBF2	1
10552	NRBP1	1
10553	NRBP2	1
10554	NRCAM	3.620874e-01
10555	NRD1	1
10556	NRF1	1
10557	NRG1	1
10558	NRG2	1
10559	NRG3	1.758722e-01
10560	NRG4	1
10561	NRGN	1
10562	NRIP1	1.231969e-01
10563	NRIP2	1
10564	NRIP3	1
10565	NRK	1
10566	NRL	1
10567	NRM	1
10568	NRN1	1
10569	NRN1L	1
10570	NRP1	1
10571	NRP2	1.587061e-01
10572	NRSN1	1
10573	NRSN2	1
10574	NRTN	1
10575	NRXN1	1
10576	NRXN2	1
10577	NRXN3	3.298365e-01
10578	NSA2	1
10579	NSD1	5.286201e-01
10580	NSDHL	1
10581	NSF	1
In gene NSFL1C the following bins exceed PROBCAP:
    PRAD-CH-5789	categ 6	N = 1040    n = 1	mu =   1.98e-07
10582	NSFL1C	2.260915e-02
10583	NSL1	1
10584	NSMAF	1.139491e-01
10585	NSMCE1	1
10586	NSMCE2	1
10587	NSMCE4A	1
10588	NSUN2	1
10589	NSUN3	1
10590	NSUN4	1
10591	NSUN5	1
10592	NSUN6	1
10593	NSUN7	1
10594	NT5C	1
10595	NT5C1A	9.627525e-02
10596	NT5C1B	1
10597	NT5C2	1
10598	NT5C3	1
10599	NT5C3L	1
10600	NT5DC1	1
10601	NT5DC2	1
10602	NT5DC3	1
10603	NT5E	1
10604	NT5M	1
10605	NTAN1	1
10606	NTF3	1
10607	NTF4	1
10608	NTHL1	1
Done

Running MutSig 2:
Scatter job 117: processing genes 10519 - 10608
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000117
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 117 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1711>
Subject: Job 9877711: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1711>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000118> was used as the working directory.
Started at Fri Oct  5 22:49:40 2012
Results reported at Fri Oct  5 22:57:56 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000118.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000118.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 118  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000118.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    518.39 sec.
    Max Memory :      2217 MB
    Max Swap   :      4636 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
118
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 118
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 118: processing genes 10609 - 10699
Calculating significance of each gene.
Using projection method.
10609	NTM	3.211008e-03
10610	NTN1	1
10611	NTN3	9.099989e-02
10612	NTN4	1
10613	NTN5	7.290029e-02
10614	NTNG1	1.122902e-02
10615	NTNG2	1
10616	NTRK1	9.032479e-03
10617	NTRK2	1
10618	NTRK3	1
10619	NTS	1
10620	NTSR1	1
10621	NTSR2	1
10622	NUAK1	1
10623	NUAK2	1
10624	NUB1	1
10625	NUBP1	1
10626	NUBP2	1
10627	NUBPL	9.235575e-02
10628	NUCB1	1
10629	NUCB2	1.126934e-01
10630	NUCKS1	1
10631	NUDC	1
10632	NUDCD1	1.848896e-01
10633	NUDCD2	1
10634	NUDCD3	1
10635	NUDT1	1
10636	NUDT10	1
In gene NUDT11 the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 328     n = 1	mu =   6.75e-07
10637	NUDT11	3.242992e-04
10638	NUDT12	1
10639	NUDT13	1
10640	NUDT14	1
10641	NUDT15	1
10642	NUDT16	1
10643	NUDT16L1	1
10644	NUDT17	1
10645	NUDT18	1
10646	NUDT19	1
10647	NUDT2	1
10648	NUDT21	1
10649	NUDT22	1
10650	NUDT3	1
10651	NUDT4	1
10652	NUDT5	1
10653	NUDT6	1.103066e-02
10654	NUDT7	1
10655	NUDT8	1
10656	NUDT9	1
10657	NUF2	1
10658	NUFIP1	1
10659	NUFIP2	1
10660	NUMA1	5.639414e-01
10661	NUMB	1.451533e-01
10662	NUMBL	1
10663	NUP107	1
10664	NUP133	1.895807e-01
10665	NUP153	1
10666	NUP155	1
10667	NUP160	1
10668	NUP188	3.590935e-01
10669	NUP205	1
10670	NUP210	1
10671	NUP210L	1
10672	NUP214	1
10673	NUP35	1
10674	NUP37	1
10675	NUP43	1.158291e-01
10676	NUP50	1
10677	NUP54	1.609911e-01
10678	NUP62	1
10679	NUP62CL	1
10680	NUP85	1
10681	NUP88	1
10682	NUP93	1
10683	NUP98	3.227865e-01
10684	NUPL1	1
10685	NUPL2	1
10686	NUPR1	1
10687	NUS1	1
10688	NUSAP1	2.984434e-02
10689	NUTF2	1
10690	NVL	1
10691	NWD1	1
10692	NXF1	1
10693	NXF3	1
10694	NXF5	1
In gene NXN the following bins exceed PROBCAP:
    PRAD-EJ-5517	categ 6	N = 1072    n = 1	mu =   1.98e-07
10695	NXN	2.389053e-02
10696	NXNL1	6.734449e-02
10697	NXNL2	1
10698	NXPH1	1
10699	NXPH2	1
Done

Running MutSig 2:
Scatter job 118: processing genes 10609 - 10699
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
NTM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.423304e-01	ci left: 6.546168e-02	ci right 7.559023e-02	k: 704	n:10000
Cons ci ratio: 1.551513e-01	ci left: 5.532768e-02	ci right 6.473065e-02	k: 599	n:10000
KS ci ratio: 4.109773e-02	ci left: 4.664693e-01	ci right 4.861445e-01	k: 4763	n:10000
NTM   10000 perm   2 sec   (6284 perm/sec)   p_kst 4.763000e-01   p_cons 5.990000e-02   p_joint 7.040000e-02

Joint ci ratio: 8.794992e-02	ci left: 8.636261e-02	ci right 9.435695e-02	k: 1806	n:20000
Cons ci ratio: 1.064011e-01	ci left: 6.015897e-02	ci right 6.696859e-02	k: 1270	n:20000
KS ci ratio: 2.938513e-02	ci left: 4.638620e-01	ci right 4.777465e-01	k: 9416	n:20000
NTM   20000 perm   6 sec   (3500 perm/sec)   p_kst 4.708000e-01   p_cons 6.350000e-02   p_joint 9.030000e-02

Joint ci ratio: 7.217043e-02	ci left: 8.629292e-02	ci right 9.278682e-02	k: 2685	n:30000
Cons ci ratio: 8.698645e-02	ci left: 6.063560e-02	ci right 6.618266e-02	k: 1901	n:30000
KS ci ratio: 2.402402e-02	ci left: 4.645053e-01	ci right 4.758338e-01	k: 14105	n:30000
NTM   30000 perm   8 sec   (3886 perm/sec)   p_kst 4.701667e-01   p_cons 6.336667e-02   p_joint 8.950000e-02

Outputting figure to mutsig2_images.part000000000118/NTM.2_1203_30000_0.47017_0.063367_0.0895.png
                gene_name: NTM
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.063 
      ci_cons_bounds_left: 0.061 
     ci_cons_bounds_right: 0.066 
                  p_joint: 0.089 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.093 

Current progress: 20 percent done.
NTNG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.486017e-02	ci left: 3.286278e-01	ci right 3.472667e-01	k: 3379	n:10000
Cons ci ratio: 6.962205e-02	ci left: 2.322487e-01	ci right 2.491027e-01	k: 2406	n:10000
KS ci ratio: 3.309443e-02	ci left: 5.740655e-01	ci right 5.934856e-01	k: 5838	n:10000
NTNG1   10000 perm   2 sec   (6286 perm/sec)   p_kst 5.838000e-01   p_cons 2.406000e-01   p_joint 3.379000e-01

Outputting figure to mutsig2_images.part000000000118/NTNG1.2_1782_10000_0.5838_0.2406_0.3379.png
                gene_name: NTNG1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 40 percent done.
NTRK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.081274e-02	ci left: 7.718513e-01	ci right 7.881853e-01	k: 7801	n:10000
Cons ci ratio: 5.383424e-02	ci left: 3.370699e-01	ci right 3.558196e-01	k: 3464	n:10000
KS ci ratio: 9.289701e-03	ci left: 9.423233e-01	ci right 9.512142e-01	k: 9469	n:10000
NTRK1   10000 perm   2 sec   (6040 perm/sec)   p_kst 9.469000e-01   p_cons 3.464000e-01   p_joint 7.801000e-01

Outputting figure to mutsig2_images.part000000000118/NTRK1.2_2589_10000_0.9469_0.3464_0.7801.png
                gene_name: NTRK1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 60 percent done.
NUDT11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.880608e-01	ci left: 8.143597e-03	ci right 1.214950e-02	k: 100	n:10000
Cons ci ratio: 1.082595e-02	ci left: 9.239968e-01	ci right 9.341516e-01	k: 9292	n:10000
KS ci ratio: 8.756181e-01	ci left: 1.144300e-03	ci right 2.965502e-03	k: 19	n:10000
NUDT11   10000 perm   1 sec   (6963 perm/sec)   p_kst 1.900000e-03   p_cons 9.292000e-01   p_joint 1.000000e-02

Joint ci ratio: 3.266248e-01	ci left: 5.983476e-03	ci right 8.363189e-03	k: 142	n:20000
Cons ci ratio: 7.521581e-03	ci left: 9.278599e-01	ci right 9.349141e-01	k: 18629	n:20000
KS ci ratio: 6.620044e-01	ci left: 1.177578e-03	ci right 2.374777e-03	k: 34	n:20000
NUDT11   20000 perm   3 sec   (6134 perm/sec)   p_kst 1.700000e-03   p_cons 9.314500e-01   p_joint 7.100000e-03

Joint ci ratio: 1.467433e-01	ci left: 2.152616e-02	ci right 2.496703e-02	k: 696	n:30000
Cons ci ratio: 6.278287e-03	ci left: 9.255939e-01	ci right 9.314561e-01	k: 27857	n:30000
KS ci ratio: 5.233342e-01	ci left: 1.381407e-03	ci right 2.385675e-03	k: 55	n:30000
NUDT11   30000 perm   5 sec   (5815 perm/sec)   p_kst 1.833333e-03   p_cons 9.285667e-01   p_joint 2.320000e-02

Joint ci ratio: 3.249437e-01	ci left: 3.036855e-03	ci right 4.236984e-03	k: 144	n:40000
Cons ci ratio: 5.071160e-03	ci left: 9.348544e-01	ci right 9.396318e-01	k: 37491	n:40000
KS ci ratio: 4.647996e-01	ci left: 1.364457e-03	ci right 2.210510e-03	k: 70	n:40000
NUDT11   40000 perm   7 sec   (5589 perm/sec)   p_kst 1.750000e-03   p_cons 9.372750e-01   p_joint 3.600000e-03

Joint ci ratio: 2.892411e-01	ci left: 3.131130e-03	ci right 4.207761e-03	k: 182	n:50000
Cons ci ratio: 4.506076e-03	ci left: 9.358913e-01	ci right 9.401377e-01	k: 46902	n:50000
KS ci ratio: 4.223366e-01	ci left: 1.358118e-03	ci right 2.101654e-03	k: 85	n:50000
NUDT11   50000 perm   9 sec   (5435 perm/sec)   p_kst 1.700000e-03   p_cons 9.380400e-01   p_joint 3.640000e-03

Joint ci ratio: 2.713293e-01	ci left: 2.996652e-03	ci right 3.952370e-03	k: 207	n:60000
Cons ci ratio: 4.117745e-03	ci left: 9.359562e-01	ci right 9.398346e-01	k: 56275	n:60000
KS ci ratio: 3.822148e-01	ci left: 1.416472e-03	ci right 2.099838e-03	k: 104	n:60000
NUDT11   60000 perm   11 sec   (5295 perm/sec)   p_kst 1.733333e-03   p_cons 9.379167e-01   p_joint 3.450000e-03

Joint ci ratio: 1.141367e-01	ci left: 1.562479e-02	ci right 1.752988e-02	k: 1159	n:70000
Cons ci ratio: 3.808104e-03	ci left: 9.362316e-01	ci right 9.398177e-01	k: 65663	n:70000
KS ci ratio: 3.461629e-01	ci left: 1.512706e-03	ci right 2.158284e-03	k: 127	n:70000
NUDT11   70000 perm   14 sec   (5176 perm/sec)   p_kst 1.814286e-03   p_cons 9.380429e-01   p_joint 1.655714e-02

Joint ci ratio: 1.867902e-01	ci left: 4.963500e-03	ci right 5.997860e-03	k: 437	n:80000
Cons ci ratio: 3.553464e-03	ci left: 9.366358e-01	ci right 9.399823e-01	k: 75066	n:80000
KS ci ratio: 3.286650e-01	ci left: 1.483796e-03	ci right 2.078270e-03	k: 141	n:80000
NUDT11   80000 perm   16 sec   (5064 perm/sec)   p_kst 1.762500e-03   p_cons 9.383250e-01   p_joint 5.462500e-03

Joint ci ratio: 9.903201e-02	ci left: 1.626304e-02	ci right 1.796829e-02	k: 1539	n:90000
Cons ci ratio: 3.332893e-03	ci left: 9.373379e-01	ci right 9.404781e-01	k: 84503	n:90000
KS ci ratio: 3.096259e-01	ci left: 1.502925e-03	ci right 2.063304e-03	k: 159	n:90000
NUDT11   90000 perm   18 sec   (4952 perm/sec)   p_kst 1.766667e-03   p_cons 9.389222e-01   p_joint 1.710000e-02

Joint ci ratio: 9.811997e-02	ci left: 1.493859e-02	ci right 1.648968e-02	k: 1570	n:100000
Cons ci ratio: 3.161348e-03	ci left: 9.374382e-01	ci right 9.404163e-01	k: 93894	n:100000
KS ci ratio: 2.919150e-01	ci left: 1.537557e-03	ci right 2.072004e-03	k: 179	n:100000
NUDT11   100000 perm   21 sec   (4809 perm/sec)   p_kst 1.790000e-03   p_cons 9.389400e-01   p_joint 1.570000e-02

Joint ci ratio: 9.377730e-02	ci left: 1.490257e-02	ci right 1.637767e-02	k: 1719	n:110000
Cons ci ratio: 3.020036e-03	ci left: 9.372847e-01	ci right 9.401285e-01	k: 103259	n:110000
KS ci ratio: 2.811900e-01	ci left: 1.515906e-03	ci right 2.020037e-03	k: 193	n:110000
NUDT11   110000 perm   24 sec   (4632 perm/sec)   p_kst 1.754545e-03   p_cons 9.387182e-01   p_joint 1.562727e-02

Joint ci ratio: 8.503691e-02	ci left: 1.665954e-02	ci right 1.814724e-02	k: 2087	n:120000
Cons ci ratio: 2.896093e-03	ci left: 9.371596e-01	ci right 9.398858e-01	k: 112624	n:120000
KS ci ratio: 2.702678e-01	ci left: 1.513698e-03	ci right 1.994227e-03	k: 209	n:120000
NUDT11   120000 perm   26 sec   (4554 perm/sec)   p_kst 1.741667e-03   p_cons 9.385333e-01   p_joint 1.739167e-02

Joint ci ratio: 1.146299e-01	ci left: 8.404065e-03	ci right 9.433405e-03	k: 1158	n:130000
Cons ci ratio: 2.779744e-03	ci left: 9.373280e-01	ci right 9.399447e-01	k: 122024	n:130000
KS ci ratio: 2.599513e-01	ci left: 1.519342e-03	ci right 1.980262e-03	k: 226	n:130000
NUDT11   130000 perm   29 sec   (4477 perm/sec)   p_kst 1.738462e-03   p_cons 9.386462e-01   p_joint 8.907692e-03

Joint ci ratio: 1.099350e-01	ci left: 8.504970e-03	ci right 9.501240e-03	k: 1259	n:140000
Cons ci ratio: 2.672878e-03	ci left: 9.376255e-01	ci right 9.401420e-01	k: 131445	n:140000
KS ci ratio: 2.452554e-01	ci left: 1.598174e-03	ci right 2.051430e-03	k: 254	n:140000
NUDT11   140000 perm   32 sec   (4389 perm/sec)   p_kst 1.814286e-03   p_cons 9.388929e-01   p_joint 8.992857e-03

Joint ci ratio: 1.071321e-01	ci left: 8.372482e-03	ci right 9.326648e-03	k: 1326	n:150000
Cons ci ratio: 2.575470e-03	ci left: 9.379721e-01	ci right 9.403975e-01	k: 140879	n:150000
KS ci ratio: 2.344651e-01	ci left: 1.642022e-03	ci right 2.084255e-03	k: 278	n:150000
NUDT11   150000 perm   35 sec   (4313 perm/sec)   p_kst 1.853333e-03   p_cons 9.391933e-01   p_joint 8.840000e-03

Joint ci ratio: 1.036367e-01	ci left: 8.402969e-03	ci right 9.327460e-03	k: 1417	n:160000
Cons ci ratio: 2.493672e-03	ci left: 9.380117e-01	ci right 9.403599e-01	k: 150271	n:160000
KS ci ratio: 2.242438e-01	ci left: 1.692568e-03	ci right 2.125800e-03	k: 304	n:160000
NUDT11   160000 perm   38 sec   (4234 perm/sec)   p_kst 1.900000e-03   p_cons 9.391938e-01   p_joint 8.856250e-03

Joint ci ratio: 7.153156e-02	ci left: 1.673750e-02	ci right 1.798492e-02	k: 2950	n:170000
Cons ci ratio: 2.419578e-03	ci left: 9.380299e-01	ci right 9.403081e-01	k: 159660	n:170000
KS ci ratio: 2.133236e-01	ci left: 1.770939e-03	ci right 2.199271e-03	k: 336	n:170000
NUDT11   170000 perm   41 sec   (4168 perm/sec)   p_kst 1.976471e-03   p_cons 9.391765e-01   p_joint 1.735294e-02

Joint ci ratio: 5.184916e-02	ci left: 2.997919e-02	ci right 3.158041e-02	k: 5539	n:180000
Cons ci ratio: 2.355603e-03	ci left: 9.378565e-01	ci right 9.400738e-01	k: 169015	n:180000
KS ci ratio: 2.058228e-01	ci left: 1.804159e-03	ci right 2.223251e-03	k: 361	n:180000
NUDT11   180000 perm   44 sec   (4108 perm/sec)   p_kst 2.005556e-03   p_cons 9.389722e-01   p_joint 3.077222e-02

Joint ci ratio: 5.780543e-02	ci left: 2.294803e-02	ci right 2.431919e-02	k: 4489	n:190000
Cons ci ratio: 2.293163e-03	ci left: 9.378668e-01	ci right 9.400251e-01	k: 178401	n:190000
KS ci ratio: 1.990612e-01	ci left: 1.834116e-03	ci right 2.244473e-03	k: 386	n:190000
NUDT11   190000 perm   47 sec   (4050 perm/sec)   p_kst 2.031579e-03   p_cons 9.389526e-01   p_joint 2.362632e-02

Joint ci ratio: 4.667204e-02	ci left: 3.327427e-02	ci right 3.486927e-02	k: 6813	n:200000
Cons ci ratio: 2.235537e-03	ci left: 9.378717e-01	ci right 9.399756e-01	k: 187786	n:200000
KS ci ratio: 1.931601e-01	ci left: 1.856521e-03	ci right 2.258130e-03	k: 410	n:200000
NUDT11   200000 perm   50 sec   (3994 perm/sec)   p_kst 2.050000e-03   p_cons 9.389300e-01   p_joint 3.406500e-02

Joint ci ratio: 4.550020e-02	ci left: 3.336081e-02	ci right 3.491875e-02	k: 7168	n:210000
Cons ci ratio: 2.180053e-03	ci left: 9.379823e-01	ci right 9.400341e-01	k: 197193	n:210000
KS ci ratio: 1.877544e-01	ci left: 1.876955e-03	ci right 2.270326e-03	k: 434	n:210000
NUDT11   210000 perm   53 sec   (3938 perm/sec)   p_kst 2.066667e-03   p_cons 9.390143e-01   p_joint 3.413333e-02

Joint ci ratio: 4.469924e-02	ci left: 3.302175e-02	ci right 3.453602e-02	k: 7430	n:220000
Cons ci ratio: 2.129263e-03	ci left: 9.380422e-01	ci right 9.400462e-01	k: 206591	n:220000
KS ci ratio: 1.843959e-01	ci left: 1.860977e-03	ci right 2.243242e-03	k: 450	n:220000
NUDT11   220000 perm   57 sec   (3880 perm/sec)   p_kst 2.045455e-03   p_cons 9.390500e-01   p_joint 3.377273e-02

Joint ci ratio: 4.365794e-02	ci left: 3.312539e-02	ci right 3.460813e-02	k: 7788	n:230000
Cons ci ratio: 2.079649e-03	ci left: 9.382201e-01	ci right 9.401775e-01	k: 216017	n:230000
KS ci ratio: 1.812113e-01	ci left: 1.846445e-03	ci right 2.218457e-03	k: 466	n:230000
NUDT11   230000 perm   60 sec   (3828 perm/sec)   p_kst 2.026087e-03   p_cons 9.392043e-01   p_joint 3.386087e-02

Joint ci ratio: 4.263743e-02	ci left: 3.329499e-02	ci right 3.474963e-02	k: 8164	n:240000
Cons ci ratio: 2.035640e-03	ci left: 9.382534e-01	ci right 9.401694e-01	k: 225412	n:240000
KS ci ratio: 1.774515e-01	ci left: 1.849103e-03	ci right 2.213091e-03	k: 486	n:240000
NUDT11   240000 perm   64 sec   (3776 perm/sec)   p_kst 2.025000e-03   p_cons 9.392167e-01   p_joint 3.401667e-02

Joint ci ratio: 4.223097e-02	ci left: 3.261198e-02	ci right 3.402286e-02	k: 8328	n:250000
Cons ci ratio: 1.994032e-03	ci left: 9.383005e-01	ci right 9.401773e-01	k: 234811	n:250000
KS ci ratio: 1.740885e-01	ci left: 1.847795e-03	ci right 2.203908e-03	k: 505	n:250000
NUDT11   250000 perm   67 sec   (3721 perm/sec)   p_kst 2.020000e-03   p_cons 9.392440e-01   p_joint 3.331200e-02

Joint ci ratio: 4.159793e-02	ci left: 3.233949e-02	ci right 3.371710e-02	k: 8586	n:260000
Cons ci ratio: 1.954348e-03	ci left: 9.383753e-01	ci right 9.402148e-01	k: 244218	n:260000
KS ci ratio: 1.701000e-01	ci left: 1.865060e-03	ci right 2.215420e-03	k: 529	n:260000
NUDT11   260000 perm   71 sec   (3667 perm/sec)   p_kst 2.034615e-03   p_cons 9.393000e-01   p_joint 3.302308e-02

Joint ci ratio: 4.063753e-02	ci left: 3.263740e-02	ci right 3.399486e-02	k: 8994	n:270000
Cons ci ratio: 1.920926e-03	ci left: 9.382063e-01	ci right 9.400139e-01	k: 253561	n:270000
KS ci ratio: 1.671310e-01	ci left: 1.863384e-03	ci right 2.206705e-03	k: 548	n:270000
NUDT11   270000 perm   75 sec   (3616 perm/sec)   p_kst 2.029630e-03   p_cons 9.391148e-01   p_joint 3.331111e-02

Joint ci ratio: 3.992773e-02	ci left: 3.261372e-02	ci right 3.394596e-02	k: 9317	n:280000
Cons ci ratio: 1.883136e-03	ci left: 9.384164e-01	ci right 9.401888e-01	k: 263006	n:280000
KS ci ratio: 1.634496e-01	ci left: 1.882429e-03	ci right 2.220868e-03	k: 573	n:280000
NUDT11   280000 perm   78 sec   (3568 perm/sec)   p_kst 2.046429e-03   p_cons 9.393071e-01   p_joint 3.327500e-02

Joint ci ratio: 3.924125e-02	ci left: 3.261237e-02	ci right 3.392112e-02	k: 9646	n:290000
Cons ci ratio: 1.852511e-03	ci left: 9.382999e-01	ci right 9.400431e-01	k: 272361	n:290000
KS ci ratio: 1.612193e-01	ci left: 1.870448e-03	ci right 2.201699e-03	k: 589	n:290000
NUDT11   290000 perm   82 sec   (3521 perm/sec)   p_kst 2.031034e-03   p_cons 9.391759e-01   p_joint 3.326207e-02

Joint ci ratio: 3.972126e-02	ci left: 3.081842e-02	ci right 3.207065e-02	k: 9432	n:300000
Cons ci ratio: 1.821307e-03	ci left: 9.383188e-01	ci right 9.400327e-01	k: 281754	n:300000
KS ci ratio: 1.589466e-01	ci left: 1.862495e-03	ci right 2.187245e-03	k: 606	n:300000
NUDT11   300000 perm   86 sec   (3474 perm/sec)   p_kst 2.020000e-03   p_cons 9.391800e-01   p_joint 3.144000e-02

Joint ci ratio: 3.794348e-02	ci left: 3.265199e-02	ci right 3.391805e-02	k: 10317	n:310000
Cons ci ratio: 1.790971e-03	ci left: 9.383790e-01	ci right 9.400643e-01	k: 291160	n:310000
KS ci ratio: 1.558936e-01	ci left: 1.876786e-03	ci right 2.197154e-03	k: 630	n:310000
NUDT11   310000 perm   91 sec   (3425 perm/sec)   p_kst 2.032258e-03   p_cons 9.392258e-01   p_joint 3.328065e-02

Joint ci ratio: 3.735650e-02	ci left: 3.264386e-02	ci right 3.388961e-02	k: 10644	n:320000
Cons ci ratio: 1.760169e-03	ci left: 9.385615e-01	ci right 9.402180e-01	k: 300606	n:320000
KS ci ratio: 1.540743e-01	ci left: 1.863192e-03	ci right 2.177186e-03	k: 645	n:320000
NUDT11   320000 perm   95 sec   (3381 perm/sec)   p_kst 2.015625e-03   p_cons 9.393938e-01   p_joint 3.326250e-02

Joint ci ratio: 3.786954e-02	ci left: 3.085262e-02	ci right 3.204653e-02	k: 10377	n:330000
Cons ci ratio: 1.732876e-03	ci left: 9.386019e-01	ci right 9.402328e-01	k: 310009	n:330000
KS ci ratio: 1.516293e-01	ci left: 1.867935e-03	ci right 2.177278e-03	k: 666	n:330000
NUDT11   330000 perm   99 sec   (3339 perm/sec)   p_kst 2.018182e-03   p_cons 9.394212e-01   p_joint 3.144545e-02

Joint ci ratio: 3.624994e-02	ci left: 3.264695e-02	ci right 3.385514e-02	k: 11304	n:340000
Cons ci ratio: 1.707078e-03	ci left: 9.386224e-01	ci right 9.402289e-01	k: 319406	n:340000
KS ci ratio: 1.497339e-01	ci left: 1.861110e-03	ci right 2.165125e-03	k: 683	n:340000
NUDT11   340000 perm   103 sec   (3297 perm/sec)   p_kst 2.008824e-03   p_cons 9.394294e-01   p_joint 3.324706e-02

Joint ci ratio: 3.675435e-02	ci left: 3.089831e-02	ci right 3.205803e-02	k: 11016	n:350000
Cons ci ratio: 1.682019e-03	ci left: 9.386677e-01	ci right 9.402507e-01	k: 328812	n:350000
KS ci ratio: 1.475917e-01	ci left: 1.862953e-03	ci right 2.162531e-03	k: 703	n:350000
NUDT11   350000 perm   107 sec   (3256 perm/sec)   p_kst 2.008571e-03   p_cons 9.394629e-01   p_joint 3.147429e-02

Joint ci ratio: 3.846023e-02	ci left: 2.750754e-02	ci right 2.858896e-02	k: 10096	n:360000
Cons ci ratio: 1.656897e-03	ci left: 9.387889e-01	ci right 9.403484e-01	k: 338246	n:360000
KS ci ratio: 1.462490e-01	ci left: 1.845986e-03	ci right 2.139900e-03	k: 716	n:360000
NUDT11   360000 perm   112 sec   (3216 perm/sec)   p_kst 1.988889e-03   p_cons 9.395722e-01   p_joint 2.804444e-02

Joint ci ratio: 3.468445e-02	ci left: 3.279119e-02	ci right 3.395127e-02	k: 12346	n:370000
Cons ci ratio: 1.633603e-03	ci left: 9.388521e-01	ci right 9.403897e-01	k: 347661	n:370000
KS ci ratio: 1.445461e-01	ci left: 1.840369e-03	ci right 2.129682e-03	k: 733	n:370000
NUDT11   370000 perm   116 sec   (3178 perm/sec)   p_kst 1.981081e-03   p_cons 9.396243e-01   p_joint 3.336757e-02

Joint ci ratio: 3.538582e-02	ci left: 3.073036e-02	ci right 3.183996e-02	k: 11887	n:380000
Cons ci ratio: 1.610065e-03	ci left: 9.389967e-01	ci right 9.405124e-01	k: 357108	n:380000
KS ci ratio: 1.422385e-01	ci left: 1.852831e-03	ci right 2.139059e-03	k: 757	n:380000
NUDT11   380000 perm   121 sec   (3140 perm/sec)   p_kst 1.992105e-03   p_cons 9.397579e-01   p_joint 3.128158e-02

Joint ci ratio: 3.390814e-02	ci left: 3.257124e-02	ci right 3.369725e-02	k: 12921	n:390000
Cons ci ratio: 1.589130e-03	ci left: 9.390180e-01	ci right 9.405139e-01	k: 366510	n:390000
KS ci ratio: 1.403984e-01	ci left: 1.854791e-03	ci right 2.137305e-03	k: 777	n:390000
NUDT11   390000 perm   126 sec   (3101 perm/sec)   p_kst 1.992308e-03   p_cons 9.397692e-01   p_joint 3.313077e-02

Joint ci ratio: 3.449508e-02	ci left: 3.073526e-02	ci right 3.181654e-02	k: 12509	n:400000
Cons ci ratio: 1.569475e-03	ci left: 9.390031e-01	ci right 9.404805e-01	k: 375898	n:400000
KS ci ratio: 1.392411e-01	ci left: 1.839784e-03	ci right 2.117510e-03	k: 790	n:400000
NUDT11   400000 perm   135 sec   (2969 perm/sec)   p_kst 1.975000e-03   p_cons 9.397450e-01   p_joint 3.127250e-02

Joint ci ratio: 3.404681e-02	ci left: 3.078603e-02	ci right 3.185475e-02	k: 12840	n:410000
Cons ci ratio: 1.549530e-03	ci left: 9.390627e-01	ci right 9.405213e-01	k: 385316	n:410000
KS ci ratio: 1.375134e-01	ci left: 1.842003e-03	ci right 2.116331e-03	k: 810	n:410000
NUDT11   410000 perm   143 sec   (2863 perm/sec)   p_kst 1.975610e-03   p_cons 9.397951e-01   p_joint 3.131707e-02

Joint ci ratio: 3.838198e-02	ci left: 2.376801e-02	ci right 2.470047e-02	k: 10177	n:420000
Cons ci ratio: 1.532323e-03	ci left: 9.389711e-01	ci right 9.404133e-01	k: 394672	n:420000
KS ci ratio: 1.359305e-01	ci left: 1.841836e-03	ci right 2.112727e-03	k: 829	n:420000
NUDT11   420000 perm   150 sec   (2803 perm/sec)   p_kst 1.973810e-03   p_cons 9.396952e-01   p_joint 2.423095e-02

Joint ci ratio: 3.349858e-02	ci left: 3.034556e-02	ci right 3.138170e-02	k: 13270	n:430000
Cons ci ratio: 1.514864e-03	ci left: 9.389446e-01	ci right 9.403704e-01	k: 404054	n:430000
KS ci ratio: 1.347194e-01	ci left: 1.832705e-03	ci right 2.099659e-03	k: 844	n:430000
NUDT11   430000 perm   155 sec   (2779 perm/sec)   p_kst 1.962791e-03   p_cons 9.396605e-01   p_joint 3.086047e-02

Joint ci ratio: 3.479698e-02	ci left: 2.754607e-02	ci right 2.852380e-02	k: 12334	n:440000
Cons ci ratio: 1.498379e-03	ci left: 9.388898e-01	ci right 9.402999e-01	k: 413423	n:440000
KS ci ratio: 1.328454e-01	ci left: 1.843773e-03	ci right 2.108308e-03	k: 868	n:440000
NUDT11   440000 perm   160 sec   (2754 perm/sec)   p_kst 1.972727e-03   p_cons 9.395977e-01   p_joint 2.803182e-02

Joint ci ratio: 3.272414e-02	ci left: 3.039631e-02	ci right 3.140974e-02	k: 13905	n:450000
Cons ci ratio: 1.481432e-03	ci left: 9.389134e-01	ci right 9.403076e-01	k: 422826	n:450000
KS ci ratio: 1.313425e-01	ci left: 1.845776e-03	ci right 2.107369e-03	k: 888	n:450000
NUDT11   450000 perm   165 sec   (2729 perm/sec)   p_kst 1.973333e-03   p_cons 9.396133e-01   p_joint 3.090000e-02

Joint ci ratio: 3.404255e-02	ci left: 2.754024e-02	ci right 2.849615e-02	k: 12887	n:460000
Cons ci ratio: 1.464515e-03	ci left: 9.389776e-01	ci right 9.403559e-01	k: 432248	n:460000
KS ci ratio: 1.299612e-01	ci left: 1.845605e-03	ci right 2.104211e-03	k: 907	n:460000
NUDT11   460000 perm   170 sec   (2703 perm/sec)   p_kst 1.971739e-03   p_cons 9.396696e-01   p_joint 2.801522e-02

Joint ci ratio: 3.178960e-02	ci left: 3.083991e-02	ci right 3.183822e-02	k: 14728	n:470000
Cons ci ratio: 1.449304e-03	ci left: 9.389494e-01	ci right 9.403133e-01	k: 441628	n:470000
KS ci ratio: 1.282764e-01	ci left: 1.855752e-03	ci right 2.112152e-03	k: 931	n:470000
NUDT11   470000 perm   175 sec   (2679 perm/sec)   p_kst 1.980851e-03   p_cons 9.396340e-01   p_joint 3.133617e-02

Joint ci ratio: 3.295125e-02	ci left: 2.816747e-02	ci right 2.911323e-02	k: 13746	n:480000
Cons ci ratio: 1.434926e-03	ci left: 9.388930e-01	ci right 9.402433e-01	k: 450994	n:480000
KS ci ratio: 1.269217e-01	ci left: 1.857427e-03	ci right 2.111144e-03	k: 951	n:480000
NUDT11   480000 perm   181 sec   (2655 perm/sec)   p_kst 1.981250e-03   p_cons 9.395708e-01   p_joint 2.863750e-02

Joint ci ratio: 3.623575e-02	ci left: 2.290369e-02	ci right 2.375094e-02	k: 11429	n:490000
Cons ci ratio: 1.420558e-03	ci left: 9.388719e-01	ci right 9.402086e-01	k: 460376	n:490000
KS ci ratio: 1.258689e-01	ci left: 1.851141e-03	ci right 2.101745e-03	k: 967	n:490000
NUDT11   490000 perm   186 sec   (2631 perm/sec)   p_kst 1.973469e-03   p_cons 9.395429e-01   p_joint 2.332449e-02

Joint ci ratio: 4.379869e-02	ci left: 1.542253e-02	ci right 1.611510e-02	k: 7883	n:500000
Cons ci ratio: 1.406192e-03	ci left: 9.388859e-01	ci right 9.402090e-01	k: 469775	n:500000
KS ci ratio: 1.246516e-01	ci left: 1.850927e-03	ci right 2.098900e-03	k: 986	n:500000
NUDT11   500000 perm   192 sec   (2608 perm/sec)   p_kst 1.972000e-03   p_cons 9.395500e-01   p_joint 1.576600e-02

Joint ci ratio: 3.730983e-02	ci left: 2.079085e-02	ci right 2.158323e-02	k: 10804	n:510000
Cons ci ratio: 1.392878e-03	ci left: 9.388481e-01	ci right 9.401587e-01	k: 479148	n:510000
KS ci ratio: 1.237776e-01	ci left: 1.841232e-03	ci right 2.086050e-03	k: 1000	n:510000
NUDT11   510000 perm   197 sec   (2583 perm/sec)   p_kst 1.960784e-03   p_cons 9.395059e-01   p_joint 2.118431e-02

Joint ci ratio: 8.187905e-02	ci left: 4.208724e-03	ci right 4.569909e-03	k: 2281	n:520000
Cons ci ratio: 1.379304e-03	ci left: 9.388641e-01	ci right 9.401618e-01	k: 488548	n:520000
KS ci ratio: 1.229216e-01	ci left: 1.831915e-03	ci right 2.073688e-03	k: 1014	n:520000
NUDT11   520000 perm   203 sec   (2561 perm/sec)   p_kst 1.950000e-03   p_cons 9.395154e-01   p_joint 4.386538e-03

Joint ci ratio: 3.519595e-02	ci left: 2.246715e-02	ci right 2.327392e-02	k: 12120	n:530000
Cons ci ratio: 1.366279e-03	ci left: 9.388662e-01	ci right 9.401517e-01	k: 497941	n:530000
KS ci ratio: 1.217281e-01	ci left: 1.833932e-03	ci right 2.073451e-03	k: 1034	n:530000
NUDT11   530000 perm   209 sec   (2539 perm/sec)   p_kst 1.950943e-03   p_cons 9.395113e-01   p_joint 2.286792e-02

Joint ci ratio: 3.105369e-02	ci left: 2.821769e-02	ci right 2.910960e-02	k: 15477	n:540000
Cons ci ratio: 1.353946e-03	ci left: 9.388404e-01	ci right 9.401142e-01	k: 507319	n:540000
KS ci ratio: 1.206834e-01	ci left: 1.832293e-03	ci right 2.069398e-03	k: 1052	n:540000
NUDT11   540000 perm   215 sec   (2516 perm/sec)   p_kst 1.948148e-03   p_cons 9.394796e-01   p_joint 2.866111e-02

Joint ci ratio: 3.421393e-02	ci left: 2.291194e-02	ci right 2.371128e-02	k: 12820	n:550000
Cons ci ratio: 1.341876e-03	ci left: 9.388210e-01	ci right 9.400834e-01	k: 516700	n:550000
KS ci ratio: 1.192198e-01	ci left: 1.844834e-03	ci right 2.080462e-03	k: 1078	n:550000
NUDT11   550000 perm   221 sec   (2492 perm/sec)   p_kst 1.960000e-03   p_cons 9.394545e-01   p_joint 2.330909e-02

Joint ci ratio: 3.050220e-02	ci left: 2.821108e-02	ci right 2.908666e-02	k: 16042	n:560000
Cons ci ratio: 1.329999e-03	ci left: 9.388132e-01	ci right 9.400644e-01	k: 526087	n:560000
KS ci ratio: 1.177549e-01	ci left: 1.858676e-03	ci right 2.092952e-03	k: 1105	n:560000
NUDT11   560000 perm   227 sec   (2469 perm/sec)   p_kst 1.973214e-03   p_cons 9.394411e-01   p_joint 2.864643e-02

Joint ci ratio: 2.910625e-02	ci left: 3.039130e-02	ci right 3.129067e-02	k: 17578	n:570000
Cons ci ratio: 1.317882e-03	ci left: 9.388533e-01	ci right 9.400931e-01	k: 535501	n:570000
KS ci ratio: 1.168084e-01	ci left: 1.856720e-03	ci right 2.088739e-03	k: 1123	n:570000
NUDT11   570000 perm   233 sec   (2442 perm/sec)   p_kst 1.970175e-03   p_cons 9.394754e-01   p_joint 3.083860e-02

Joint ci ratio: 3.272773e-02	ci left: 2.374275e-02	ci right 2.453442e-02	k: 13999	n:580000
Cons ci ratio: 1.306803e-03	ci left: 9.388297e-01	ci right 9.400590e-01	k: 544879	n:580000
KS ci ratio: 1.153793e-01	ci left: 1.871583e-03	ci right 2.102402e-03	k: 1151	n:580000
NUDT11   580000 perm   240 sec   (2420 perm/sec)   p_kst 1.984483e-03   p_cons 9.394466e-01   p_joint 2.413621e-02

Joint ci ratio: 2.858583e-02	ci left: 3.044644e-02	ci right 3.133106e-02	k: 18223	n:590000
Cons ci ratio: 1.295728e-03	ci left: 9.388308e-01	ci right 9.400497e-01	k: 554271	n:590000
KS ci ratio: 1.145375e-01	ci left: 1.867846e-03	ci right 2.096410e-03	k: 1168	n:590000
NUDT11   590000 perm   246 sec   (2399 perm/sec)   p_kst 1.979661e-03   p_cons 9.394424e-01   p_joint 3.088644e-02

Joint ci ratio: 2.813882e-02	ci left: 3.089063e-02	ci right 3.177390e-02	k: 18798	n:600000
Cons ci ratio: 1.283914e-03	ci left: 9.389223e-01	ci right 9.401302e-01	k: 563717	n:600000
KS ci ratio: 1.137139e-01	ci left: 1.864240e-03	ci right 2.090612e-03	k: 1185	n:600000
NUDT11   600000 perm   254 sec   (2360 perm/sec)   p_kst 1.975000e-03   p_cons 9.395283e-01   p_joint 3.133000e-02

Joint ci ratio: 2.791123e-02	ci left: 3.088561e-02	ci right 3.176148e-02	k: 19106	n:610000
Cons ci ratio: 1.273388e-03	ci left: 9.389235e-01	ci right 9.401215e-01	k: 573110	n:610000
KS ci ratio: 1.122553e-01	ci left: 1.883063e-03	ci right 2.108594e-03	k: 1216	n:610000
NUDT11   610000 perm   264 sec   (2311 perm/sec)   p_kst 1.993443e-03   p_cons 9.395246e-01   p_joint 3.132131e-02

Joint ci ratio: 2.792756e-02	ci left: 3.036812e-02	ci right 3.122982e-02	k: 19094	n:620000
Cons ci ratio: 1.263279e-03	ci left: 9.389102e-01	ci right 9.400986e-01	k: 582494	n:620000
KS ci ratio: 1.114796e-01	ci left: 1.879343e-03	ci right 2.102771e-03	k: 1233	n:620000
NUDT11   620000 perm   275 sec   (2253 perm/sec)   p_kst 1.988710e-03   p_cons 9.395065e-01   p_joint 3.079677e-02

Joint ci ratio: 2.748149e-02	ci left: 3.085562e-02	ci right 3.171695e-02	k: 19709	n:630000
Cons ci ratio: 1.252531e-03	ci left: 9.389770e-01	ci right 9.401554e-01	k: 591928	n:630000
KS ci ratio: 1.109868e-01	ci left: 1.866486e-03	ci right 2.087340e-03	k: 1244	n:630000
NUDT11   630000 perm   282 sec   (2236 perm/sec)   p_kst 1.974603e-03   p_cons 9.395683e-01   p_joint 3.128413e-02

Joint ci ratio: 2.726304e-02	ci left: 3.086542e-02	ci right 3.172008e-02	k: 20026	n:640000
Cons ci ratio: 1.242565e-03	ci left: 9.389947e-01	ci right 9.401638e-01	k: 601332	n:640000
KS ci ratio: 1.103246e-01	ci left: 1.860110e-03	ci right 2.078812e-03	k: 1259	n:640000
NUDT11   640000 perm   288 sec   (2219 perm/sec)   p_kst 1.967188e-03   p_cons 9.395813e-01   p_joint 3.129063e-02

Joint ci ratio: 2.706619e-02	ci left: 3.083827e-02	ci right 3.168591e-02	k: 20319	n:650000
Cons ci ratio: 1.232515e-03	ci left: 9.390413e-01	ci right 9.402009e-01	k: 610755	n:650000
KS ci ratio: 1.094593e-01	ci left: 1.861417e-03	ci right 2.078445e-03	k: 1279	n:650000
NUDT11   650000 perm   295 sec   (2202 perm/sec)   p_kst 1.967692e-03   p_cons 9.396231e-01   p_joint 3.126000e-02

Joint ci ratio: 2.686615e-02	ci left: 3.082852e-02	ci right 3.166954e-02	k: 20623	n:660000
Cons ci ratio: 1.223456e-03	ci left: 9.390165e-01	ci right 9.401675e-01	k: 620132	n:660000
KS ci ratio: 1.086559e-01	ci left: 1.861216e-03	ci right 2.076526e-03	k: 1298	n:660000
NUDT11   660000 perm   302 sec   (2185 perm/sec)   p_kst 1.966667e-03   p_cons 9.395939e-01   p_joint 3.124697e-02

Joint ci ratio: 2.667641e-02	ci left: 3.080574e-02	ci right 3.164011e-02	k: 20918	n:670000
Cons ci ratio: 1.214689e-03	ci left: 9.389834e-01	ci right 9.401262e-01	k: 629503	n:670000
KS ci ratio: 1.078699e-01	ci left: 1.861027e-03	ci right 2.074659e-03	k: 1317	n:670000
NUDT11   670000 perm   309 sec   (2169 perm/sec)   p_kst 1.965672e-03   p_cons 9.395567e-01   p_joint 3.122090e-02

Joint ci ratio: 2.649127e-02	ci left: 3.078219e-02	ci right 3.161004e-02	k: 21212	n:680000
Cons ci ratio: 1.205921e-03	ci left: 9.389691e-01	ci right 9.401036e-01	k: 638886	n:680000
KS ci ratio: 1.071409e-01	ci left: 1.859418e-03	ci right 2.071332e-03	k: 1335	n:680000
NUDT11   680000 perm   316 sec   (2152 perm/sec)   p_kst 1.963235e-03   p_cons 9.395382e-01   p_joint 3.119412e-02

Joint ci ratio: 2.556601e-02	ci left: 3.252789e-02	ci right 3.337169e-02	k: 22734	n:690000
Cons ci ratio: 1.197416e-03	ci left: 9.389480e-01	ci right 9.400744e-01	k: 648264	n:690000
KS ci ratio: 1.062694e-01	ci left: 1.863503e-03	ci right 2.074047e-03	k: 1357	n:690000
NUDT11   690000 perm   323 sec   (2136 perm/sec)   p_kst 1.966667e-03   p_cons 9.395130e-01   p_joint 3.294783e-02

Joint ci ratio: 2.611126e-02	ci left: 3.078543e-02	ci right 3.160131e-02	k: 21834	n:700000
Cons ci ratio: 1.188953e-03	ci left: 9.389404e-01	ci right 9.400588e-01	k: 657651	n:700000
KS ci ratio: 1.053423e-01	ci left: 1.870260e-03	ci right 2.079610e-03	k: 1381	n:700000
NUDT11   700000 perm   330 sec   (2122 perm/sec)   p_kst 1.972857e-03   p_cons 9.395014e-01   p_joint 3.119143e-02

Joint ci ratio: 2.519221e-02	ci left: 3.256189e-02	ci right 3.339404e-02	k: 23413	n:710000
Cons ci ratio: 1.180083e-03	ci left: 9.389896e-01	ci right 9.400997e-01	k: 667078	n:710000
KS ci ratio: 1.047005e-01	ci left: 1.867233e-03	ci right 2.074892e-03	k: 1398	n:710000
NUDT11   710000 perm   337 sec   (2107 perm/sec)   p_kst 1.969014e-03   p_cons 9.395465e-01   p_joint 3.297606e-02

Joint ci ratio: 2.501217e-02	ci left: 3.257614e-02	ci right 3.340262e-02	k: 23751	n:720000
Cons ci ratio: 1.172052e-03	ci left: 9.389747e-01	ci right 9.400773e-01	k: 676460	n:720000
KS ci ratio: 1.034499e-01	ci left: 1.887293e-03	ci right 2.094524e-03	k: 1432	n:720000
NUDT11   720000 perm   344 sec   (2090 perm/sec)   p_kst 1.988889e-03   p_cons 9.395278e-01   p_joint 3.298750e-02

Joint ci ratio: 2.482795e-02	ci left: 3.261045e-02	ci right 3.343162e-02	k: 24104	n:730000
Cons ci ratio: 1.164407e-03	ci left: 9.389383e-01	ci right 9.400336e-01	k: 685826	n:730000
KS ci ratio: 1.025940e-01	ci left: 1.893470e-03	ci right 2.099555e-03	k: 1456	n:730000
NUDT11   730000 perm   352 sec   (2075 perm/sec)   p_kst 1.994521e-03   p_cons 9.394877e-01   p_joint 3.301918e-02

Joint ci ratio: 2.466965e-02	ci left: 3.258743e-02	ci right 3.340272e-02	k: 24415	n:740000
Cons ci ratio: 1.156263e-03	ci left: 9.389666e-01	ci right 9.400543e-01	k: 695239	n:740000
KS ci ratio: 1.018625e-01	ci left: 1.895536e-03	ci right 2.100286e-03	k: 1477	n:740000
NUDT11   740000 perm   359 sec   (2060 perm/sec)   p_kst 1.995946e-03   p_cons 9.395122e-01   p_joint 3.299324e-02

Joint ci ratio: 2.451742e-02	ci left: 3.255709e-02	ci right 3.336652e-02	k: 24720	n:750000
Cons ci ratio: 1.148867e-03	ci left: 9.389366e-01	ci right 9.400173e-01	k: 704609	n:750000
KS ci ratio: 1.010789e-01	ci left: 1.900150e-03	ci right 2.103727e-03	k: 1500	n:750000
NUDT11   750000 perm   367 sec   (2046 perm/sec)   p_kst 2.000000e-03   p_cons 9.394787e-01   p_joint 3.296000e-02

Joint ci ratio: 2.435087e-02	ci left: 3.257204e-02	ci right 3.337626e-02	k: 25059	n:760000
Cons ci ratio: 1.141677e-03	ci left: 9.389009e-01	ci right 9.399747e-01	k: 713974	n:760000
KS ci ratio: 1.005447e-01	ci left: 1.895670e-03	ci right 2.097630e-03	k: 1516	n:760000
NUDT11   760000 perm   374 sec   (2032 perm/sec)   p_kst 1.994737e-03   p_cons 9.394395e-01   p_joint 3.297237e-02

Joint ci ratio: 2.384751e-02	ci left: 3.349689e-02	ci right 3.430662e-02	k: 26103	n:770000
Cons ci ratio: 1.134011e-03	ci left: 9.389274e-01	ci right 9.399940e-01	k: 723386	n:770000
KS ci ratio: 9.982332e-02	ci left: 1.898907e-03	ci right 2.099675e-03	k: 1538	n:770000
NUDT11   770000 perm   381 sec   (2019 perm/sec)   p_kst 1.997403e-03   p_cons 9.394623e-01   p_joint 3.390000e-02

Outputting figure to mutsig2_images.part000000000118/NUDT11.2_503_770000_0.0019974_0.93946_0.0339.png
                gene_name: NUDT11
               theta_stop: 0.100 
                    nperm: 770000 
                     p_ks: 0.0020 
        ci_ks_bounds_left: 0.0019 
       ci_ks_bounds_right: 0.0021 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.034 

Current progress: 80 percent done.
NUDT6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.278129e-02	ci left: 2.716109e-01	ci right 2.893171e-01	k: 2804	n:10000
Cons ci ratio: 7.728861e-02	ci left: 1.966317e-01	ci right 2.125408e-01	k: 2045	n:10000
KS ci ratio: 3.954049e-02	ci left: 4.857530e-01	ci right 5.054495e-01	k: 4956	n:10000
NUDT6   10000 perm   1 sec   (6776 perm/sec)   p_kst 4.956000e-01   p_cons 2.045000e-01   p_joint 2.804000e-01

Outputting figure to mutsig2_images.part000000000118/NUDT6.2_971_10000_0.4956_0.2045_0.2804.png
                gene_name: NUDT6
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000118
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 118 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1707>
Subject: Job 9877725: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1707>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000119> was used as the working directory.
Started at Fri Oct  5 22:49:40 2012
Results reported at Fri Oct  5 22:51:42 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000119.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000119.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 119  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000119.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    112.02 sec.
    Max Memory :      1922 MB
    Max Swap   :      4604 MB

    Max Processes  :         7
    Max Threads    :        55

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
119
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 119
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 119: processing genes 10700 - 10790
Calculating significance of each gene.
Using projection method.
10700	NXPH3	1
10701	NXPH4	1
10702	NXT1	1
10703	NXT2	1
10704	NYNRIN	3.116356e-02
10705	NYX	1
10706	OAF	1
10707	OAS1	1
10708	OAS2	1
10709	OAS3	1
10710	OASL	1
10711	OAT	1
10712	OAZ1	1
10713	OAZ2	1
10714	OAZ3	1
10715	OBFC1	1
10716	OBFC2A	1
10717	OBFC2B	1
10718	OBP2A	1
10719	OBP2B	1
10720	OBSCN	8.203694e-01
10721	OBSL1	1
10722	OC90	3.048020e-02
10723	OCA2	1
10724	OCEL1	1
10725	OCIAD1	1
10726	OCIAD2	1
10727	OCLM	1
10728	OCLN	1
10729	OCM	1
10730	OCM2	1
10731	OCRL	1
10732	ODAM	1
10733	ODC1	1
10734	ODF1	1
10735	ODF2	1
10736	ODF2L	1
10737	ODF3	1
10738	ODF3B	1
10739	ODF3L1	1
10740	ODF3L2	1
10741	ODF4	1
10742	ODZ1	1
10743	ODZ2	1
10744	ODZ3	1
10745	ODZ4	5.410892e-01
10746	OFD1	2.464232e-01
10747	OGDH	1
10748	OGDHL	1
10749	OGFOD1	1
10750	OGFOD2	1
10751	OGFR	1
10752	OGFRL1	1
10753	OGG1	1
10754	OGN	1
10755	OGT	2.206806e-01
10756	OIP5	1
10757	OIT3	1
10758	OLA1	1
10759	OLAH	1
10760	OLFM1	1
10761	OLFM2	1.008211e-01
10762	OLFM3	1
10763	OLFM4	1
10764	OLFML1	1
10765	OLFML2A	1
10766	OLFML2B	1
10767	OLFML3	1
10768	OLIG2	1
10769	OLIG3	1
10770	OLR1	1
10771	OMA1	1
10772	OMD	1
10773	OMG	1
10774	OMP	1
10775	ONECUT1	1.501458e-01
10776	ONECUT2	1
10777	OOEP	1
10778	OPA1	1
10779	OPA3	1
10780	OPALIN	1
10781	OPCML	1
10782	OPHN1	1
10783	OPLAH	1
10784	OPN1LW	1
10785	OPN1MW	1
10786	OPN1MW2	1
10787	OPN1SW	1
10788	OPN3	1
10789	OPN4	1
10790	OPN5	4.408027e-02
Done

Running MutSig 2:
Scatter job 119: processing genes 10700 - 10790
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
NYNRIN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.102432e-03	ci left: 9.646769e-01	ci right 9.716469e-01	k: 9683	n:10000
Cons ci ratio: 2.818337e-02	ci left: 6.498149e-01	ci right 6.684923e-01	k: 6592	n:10000
KS ci ratio: 1.831749e-02	ci left: 8.131401e-01	ci right 8.282726e-01	k: 8208	n:10000
NYNRIN   10000 perm   2 sec   (4433 perm/sec)   p_kst 8.208000e-01   p_cons 6.592000e-01   p_joint 9.683000e-01

Outputting figure to mutsig2_images.part000000000119/NYNRIN.3_5729_10000_0.8208_0.6592_0.9683.png
                gene_name: NYNRIN
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 50 percent done.
OBSCN
Processing conservation and coverage...
39% 78% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.971088e-02	ci left: 7.901975e-01	ci right 8.060285e-01	k: 7982	n:10000
KS ci ratio: 3.902208e-02	ci left: 4.923508e-01	ci right 5.120479e-01	k: 5022	n:10000
OBSCN   10000 perm   5 sec   (2171 perm/sec)   p_kst 5.022000e-01   p_cons 7.982000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000119/OBSCN.3_25533_10000_0.5022_0.7982_1.png
                gene_name: OBSCN
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000119
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 119 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1645>
Subject: Job 9877739: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1645>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000120> was used as the working directory.
Started at Fri Oct  5 22:49:40 2012
Results reported at Fri Oct  5 22:51:12 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000120.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000120.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 120  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000120.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    102.50 sec.
    Max Memory :      1134 MB
    Max Swap   :      3969 MB

    Max Processes  :         7
    Max Threads    :        55

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
120
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 120
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 120: processing genes 10791 - 10880
Calculating significance of each gene.
Using projection method.
10791	OPRD1	1
10792	OPRK1	1
10793	OPRL1	1
10794	OPRM1	1
10795	OPTC	1
10796	OPTN	1
10797	OR10A2	1
10798	OR10A3	1
10799	OR10A4	1.550617e-02
10800	OR10A5	1
10801	OR10A6	1
10802	OR10A7	1
10803	OR10AD1	1
10804	OR10AG1	1
10805	OR10C1	1
10806	OR10G2	5.199147e-02
10807	OR10G3	1
10808	OR10G4	1
10809	OR10G7	1
10810	OR10G8	3.190217e-03
10811	OR10G9	1
10812	OR10H1	1
10813	OR10H2	1
10814	OR10H3	4.253832e-02
10815	OR10H4	1
10816	OR10H5	1
10817	OR10J1	1
10818	OR10J3	1
10819	OR10J5	1
10820	OR10K1	1
10821	OR10K2	1
10822	OR10P1	9.283412e-03
10823	OR10Q1	1
10824	OR10R2	7.609471e-02
10825	OR10S1	1
10826	OR10T2	1
10827	OR10V1	1
10828	OR10W1	1
10829	OR10X1	1
10830	OR10Z1	1
10831	OR11A1	1
10832	OR11G2	1
10833	OR11H1	1
10834	OR11H12	1
10835	OR11H4	1
10836	OR11H6	1
10837	OR11L1	8.397201e-02
10838	OR12D2	1
10839	OR12D3	1
10840	OR13A1	1
10841	OR13C2	2.644483e-02
10842	OR13C3	1
10843	OR13C4	1
10844	OR13C5	3.949067e-02
10845	OR13C8	1
10846	OR13C9	1
10847	OR13D1	2.632577e-02
10848	OR13F1	9.921627e-02
10849	OR13G1	1
10850	OR13H1	1
10851	OR13J1	1
10852	OR14A16	1
10853	OR14C36	1
10854	OR14I1	1
10855	OR14J1	1
10856	OR1A1	1
10857	OR1A2	1
10858	OR1B1	1
10859	OR1C1	1
10860	OR1D2	1
10861	OR1E1	1
10862	OR1E2	1
10863	OR1F1	1
10864	OR1G1	1
10865	OR1I1	1
10866	OR1J1	1.034744e-01
10867	OR1J2	1
10868	OR1J4	1
10869	OR1K1	1
10870	OR1L1	1
10871	OR1L3	1
10872	OR1L4	1
10873	OR1L6	1
10874	OR1L8	1
10875	OR1M1	6.941212e-02
10876	OR1N1	1
10877	OR1N2	1
10878	OR1Q1	1
10879	OR1S1	4.980386e-02
10880	OR1S2	1
Done

Running MutSig 2:
Scatter job 120: processing genes 10791 - 10880
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
OR10G8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.076832e-02	ci left: 9.247196e-01	ci right 9.348283e-01	k: 9299	n:10000
Cons ci ratio: 1.886299e-02	ci left: 8.042017e-01	ci right 8.196161e-01	k: 8120	n:10000
KS ci ratio: 4.340871e-02	ci left: 4.393171e-01	ci right 4.589126e-01	k: 4491	n:10000
OR10G8   10000 perm   2 sec   (6237 perm/sec)   p_kst 4.491000e-01   p_cons 8.120000e-01   p_joint 9.299000e-01

Outputting figure to mutsig2_images.part000000000120/OR10G8.2_940_10000_0.4491_0.812_0.9299.png
                gene_name: OR10G8
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000120
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 120 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1727>
Subject: Job 9877756: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1727>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000121> was used as the working directory.
Started at Fri Oct  5 22:49:40 2012
Results reported at Fri Oct  5 22:58:32 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000121.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000121.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 121  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000121.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    524.61 sec.
    Max Memory :      2282 MB
    Max Swap   :      4763 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
121
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 121
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 121: processing genes 10881 - 10971
Calculating significance of each gene.
Using projection method.
10881	OR2A1	1
10882	OR2A12	1
10883	OR2A14	1
10884	OR2A2	1
10885	OR2A25	1
10886	OR2A4	1
10887	OR2A42	1
10888	OR2A5	4.160724e-02
10889	OR2A7	1
10890	OR2AE1	1.152183e-03
10891	OR2AG1	1
10892	OR2AG2	1
10893	OR2AK2	1
10894	OR2AT4	1
10895	OR2B11	1
10896	OR2B2	1
10897	OR2B3	1
10898	OR2B6	1
10899	OR2C1	4.537306e-02
10900	OR2C3	1
10901	OR2D2	1
10902	OR2D3	1
10903	OR2F1	1
10904	OR2F2	1
10905	OR2G2	1
10906	OR2G3	1
10907	OR2G6	1.013373e-03
10908	OR2H1	1
10909	OR2H2	1
10910	OR2J2	1
10911	OR2J3	1
10912	OR2K2	1
10913	OR2L13	1
10914	OR2L2	1
10915	OR2L3	1
10916	OR2L8	1
10917	OR2M2	1.171547e-02
10918	OR2M3	3.949815e-04
10919	OR2M4	1
10920	OR2M5	1
10921	OR2M7	1
10922	OR2S2	1
10923	OR2T1	1
10924	OR2T10	1
10925	OR2T11	1
10926	OR2T12	1
10927	OR2T2	1
10928	OR2T27	1
10929	OR2T29	1
10930	OR2T3	8.010663e-02
10931	OR2T33	9.133231e-02
10932	OR2T34	1
10933	OR2T35	1
10934	OR2T4	1
10935	OR2T5	1
10936	OR2T6	1
10937	OR2T8	1
10938	OR2V2	1
10939	OR2W1	1
10940	OR2W3	1
10941	OR2W5	1
10942	OR2Y1	1
10943	OR2Z1	1
10944	OR3A1	5.019378e-02
10945	OR3A2	1
10946	OR3A3	1
10947	OR4A15	7.016079e-02
10948	OR4A16	2.592939e-03
10949	OR4A47	1
10950	OR4A5	1
10951	OR4B1	1
10952	OR4C11	1
10953	OR4C12	1
10954	OR4C13	2.409269e-02
10955	OR4C15	1
10956	OR4C16	1.088167e-02
10957	OR4C3	8.875603e-02
10958	OR4C46	1
10959	OR4C6	1
10960	OR4D1	1
10961	OR4D10	1
10962	OR4D11	1
10963	OR4D2	1
10964	OR4D5	1.745679e-05
10965	OR4D6	1.021138e-01
10966	OR4D9	9.363479e-02
10967	OR4E2	1
10968	OR4F15	1
10969	OR4F17	1
10970	OR4F21	1
10971	OR4F4	1
Done

Running MutSig 2:
Scatter job 121: processing genes 10881 - 10971
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
OR4D5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.073802e-02	ci left: 6.095991e-01	ci right 6.287314e-01	k: 6192	n:10000
Cons ci ratio: 6.160471e-02	ci left: 2.792365e-01	ci right 2.970871e-01	k: 2881	n:10000
KS ci ratio: 2.060037e-02	ci left: 7.753971e-01	ci right 7.916375e-01	k: 7836	n:10000
OR4D5   10000 perm   1 sec   (7001 perm/sec)   p_kst 7.836000e-01   p_cons 2.881000e-01   p_joint 6.192000e-01

Outputting figure to mutsig2_images.part000000000121/OR4D5.3_961_10000_0.7836_0.2881_0.6192.png
                gene_name: OR4D5
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 20 percent done.
OR2AE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.983124e-01	ci left: 3.386163e-02	ci right 4.141078e-02	k: 375	n:10000
Cons ci ratio: 4.420964e-01	ci left: 6.081359e-03	ci right 9.614411e-03	k: 77	n:10000
KS ci ratio: 8.720168e-02	ci left: 1.607198e-01	ci right 1.754741e-01	k: 1680	n:10000
OR2AE1   10000 perm   1 sec   (7475 perm/sec)   p_kst 1.680000e-01   p_cons 7.700000e-03   p_joint 3.750000e-02

Joint ci ratio: 1.923153e-01	ci left: 1.839051e-02	ci right 2.235066e-02	k: 406	n:20000
Cons ci ratio: 3.301307e-01	ci left: 5.845775e-03	ci right 8.200977e-03	k: 139	n:20000
KS ci ratio: 6.236552e-02	ci left: 1.597810e-01	ci right 1.701166e-01	k: 3298	n:20000
OR2AE1   20000 perm   3 sec   (6619 perm/sec)   p_kst 1.649000e-01   p_cons 6.950000e-03   p_joint 2.030000e-02

Joint ci ratio: 1.279587e-01	ci left: 2.838926e-02	ci right 3.230240e-02	k: 909	n:30000
Cons ci ratio: 2.748756e-01	ci left: 5.808226e-03	ci right 7.689210e-03	k: 201	n:30000
KS ci ratio: 5.063078e-02	ci left: 1.623003e-01	ci right 1.707644e-01	k: 4995	n:30000
OR2AE1   30000 perm   5 sec   (6291 perm/sec)   p_kst 1.665000e-01   p_cons 6.700000e-03   p_joint 3.030000e-02

Joint ci ratio: 1.255255e-01	ci left: 2.230417e-02	ci right 2.531551e-02	k: 951	n:40000
Cons ci ratio: 2.404589e-01	ci left: 5.806474e-03	ci right 7.416412e-03	k: 263	n:40000
KS ci ratio: 4.369558e-02	ci left: 1.638275e-01	ci right 1.711709e-01	k: 6699	n:40000
OR2AE1   40000 perm   7 sec   (5888 perm/sec)   p_kst 1.674750e-01   p_cons 6.575000e-03   p_joint 2.377500e-02

Joint ci ratio: 1.016564e-01	ci left: 2.740999e-02	ci right 3.036504e-02	k: 1443	n:50000
Cons ci ratio: 2.103143e-01	ci left: 6.174213e-03	ci right 7.643912e-03	k: 344	n:50000
KS ci ratio: 3.904338e-02	ci left: 1.644942e-01	ci right 1.710644e-01	k: 8388	n:50000
OR2AE1   50000 perm   9 sec   (5728 perm/sec)   p_kst 1.677600e-01   p_cons 6.880000e-03   p_joint 2.886000e-02

Joint ci ratio: 9.510755e-02	ci left: 2.622231e-02	ci right 2.885699e-02	k: 1651	n:60000
Cons ci ratio: 1.943680e-01	ci left: 6.078723e-03	ci right 7.402999e-03	k: 403	n:60000
KS ci ratio: 3.574362e-02	ci left: 1.639904e-01	ci right 1.699752e-01	k: 10018	n:60000
OR2AE1   60000 perm   11 sec   (5612 perm/sec)   p_kst 1.669667e-01   p_cons 6.716667e-03   p_joint 2.751667e-02

Joint ci ratio: 8.379652e-02	ci left: 2.904254e-02	ci right 3.159658e-02	k: 2121	n:70000
Cons ci ratio: 1.798220e-01	ci left: 6.136335e-03	ci right 7.362232e-03	k: 471	n:70000
KS ci ratio: 3.313104e-02	ci left: 1.638889e-01	ci right 1.694244e-01	k: 11665	n:70000
OR2AE1   70000 perm   13 sec   (5480 perm/sec)   p_kst 1.666429e-01   p_cons 6.728571e-03   p_joint 3.030000e-02

Joint ci ratio: 7.053209e-02	ci left: 3.586227e-02	ci right 3.849643e-02	k: 2973	n:80000
Cons ci ratio: 1.650684e-01	ci left: 6.421966e-03	ci right 7.589216e-03	k: 559	n:80000
KS ci ratio: 3.092112e-02	ci left: 1.646946e-01	ci right 1.698795e-01	k: 13382	n:80000
OR2AE1   80000 perm   15 sec   (5313 perm/sec)   p_kst 1.672750e-01   p_cons 6.987500e-03   p_joint 3.716250e-02

Joint ci ratio: 6.034304e-02	ci left: 4.343574e-02	ci right 4.614925e-02	k: 4030	n:90000
Cons ci ratio: 1.562538e-01	ci left: 6.401608e-03	ci right 7.497200e-03	k: 624	n:90000
KS ci ratio: 2.910964e-02	ci left: 1.652533e-01	ci right 1.701459e-01	k: 15092	n:90000
OR2AE1   90000 perm   17 sec   (5178 perm/sec)   p_kst 1.676889e-01   p_cons 6.933333e-03   p_joint 4.477778e-02

Joint ci ratio: 6.341885e-02	ci left: 3.563171e-02	ci right 3.797525e-02	k: 3679	n:100000
Cons ci ratio: 1.500347e-01	ci left: 6.271109e-03	ci right 7.297812e-03	k: 677	n:100000
KS ci ratio: 2.763564e-02	ci left: 1.651803e-01	ci right 1.698190e-01	k: 16749	n:100000
OR2AE1   100000 perm   20 sec   (5074 perm/sec)   p_kst 1.674900e-01   p_cons 6.770000e-03   p_joint 3.679000e-02

Joint ci ratio: 6.331562e-02	ci left: 3.260555e-02	ci right 3.474640e-02	k: 3703	n:110000
Cons ci ratio: 1.437137e-01	ci left: 6.235172e-03	ci right 7.209292e-03	k: 738	n:110000
KS ci ratio: 2.639689e-02	ci left: 1.647911e-01	ci right 1.692083e-01	k: 18369	n:110000
OR2AE1   110000 perm   22 sec   (4991 perm/sec)   p_kst 1.669909e-01   p_cons 6.709091e-03   p_joint 3.366364e-02

Joint ci ratio: 5.935287e-02	ci left: 3.403298e-02	ci right 3.612290e-02	k: 4208	n:120000
Cons ci ratio: 1.371833e-01	ci left: 6.294510e-03	ci right 7.229566e-03	k: 810	n:120000
KS ci ratio: 2.530039e-02	ci left: 1.645869e-01	ci right 1.688126e-01	k: 20003	n:120000
OR2AE1   120000 perm   24 sec   (4905 perm/sec)   p_kst 1.666917e-01   p_cons 6.750000e-03   p_joint 3.506667e-02

Joint ci ratio: 7.649579e-02	ci left: 1.904203e-02	ci right 2.056411e-02	k: 2573	n:130000
Cons ci ratio: 1.328393e-01	ci left: 6.211655e-03	ci right 7.102873e-03	k: 864	n:130000
KS ci ratio: 2.431053e-02	ci left: 1.646393e-01	ci right 1.686987e-01	k: 21666	n:130000
OR2AE1   130000 perm   27 sec   (4820 perm/sec)   p_kst 1.666615e-01   p_cons 6.646154e-03   p_joint 1.979231e-02

Joint ci ratio: 7.378112e-02	ci left: 1.903455e-02	ci right 2.049972e-02	k: 2766	n:140000
Cons ci ratio: 1.283223e-01	ci left: 6.196354e-03	ci right 7.052844e-03	k: 926	n:140000
KS ci ratio: 2.343447e-02	ci left: 1.646159e-01	ci right 1.685264e-01	k: 23319	n:140000
OR2AE1   140000 perm   30 sec   (4737 perm/sec)   p_kst 1.665643e-01   p_cons 6.614286e-03   p_joint 1.975714e-02

Joint ci ratio: 7.118929e-02	ci left: 1.910750e-02	ci right 2.052448e-02	k: 2971	n:150000
Cons ci ratio: 1.232990e-01	ci left: 6.280461e-03	ci right 7.112112e-03	k: 1003	n:150000
KS ci ratio: 2.260442e-02	ci left: 1.651156e-01	ci right 1.688972e-01	k: 25050	n:150000
OR2AE1   150000 perm   32 sec   (4657 perm/sec)   p_kst 1.670000e-01   p_cons 6.686667e-03   p_joint 1.980667e-02

Joint ci ratio: 6.879750e-02	ci left: 1.920285e-02	ci right 2.057713e-02	k: 3181	n:160000
Cons ci ratio: 1.191562e-01	ci left: 6.318235e-03	ci right 7.124796e-03	k: 1074	n:160000
KS ci ratio: 2.187537e-02	ci left: 1.653185e-01	ci right 1.689811e-01	k: 26743	n:160000
OR2AE1   160000 perm   35 sec   (4581 perm/sec)   p_kst 1.671438e-01   p_cons 6.712500e-03   p_joint 1.988125e-02

Joint ci ratio: 6.660158e-02	ci left: 1.930503e-02	ci right 2.064082e-02	k: 3394	n:170000
Cons ci ratio: 1.152530e-01	ci left: 6.369118e-03	ci right 7.153728e-03	k: 1148	n:170000
KS ci ratio: 2.120901e-02	ci left: 1.655461e-01	ci right 1.691006e-01	k: 28444	n:170000
OR2AE1   170000 perm   38 sec   (4505 perm/sec)   p_kst 1.673176e-01   p_cons 6.752941e-03   p_joint 1.996471e-02

Joint ci ratio: 6.445763e-02	ci left: 1.948396e-02	ci right 2.078711e-02	k: 3623	n:180000
Cons ci ratio: 1.114349e-01	ci left: 6.447138e-03	ci right 7.213320e-03	k: 1228	n:180000
KS ci ratio: 2.057915e-02	ci left: 1.660320e-01	ci right 1.694898e-01	k: 30196	n:180000
OR2AE1   180000 perm   41 sec   (4436 perm/sec)   p_kst 1.677556e-01   p_cons 6.822222e-03   p_joint 2.012778e-02

Joint ci ratio: 6.259942e-02	ci left: 1.958766e-02	ci right 2.085861e-02	k: 3841	n:190000
Cons ci ratio: 1.083064e-01	ci left: 6.476354e-03	ci right 7.223022e-03	k: 1300	n:190000
KS ci ratio: 2.003051e-02	ci left: 1.660750e-01	ci right 1.694404e-01	k: 31873	n:190000
OR2AE1   190000 perm   44 sec   (4348 perm/sec)   p_kst 1.677526e-01   p_cons 6.842105e-03   p_joint 2.021579e-02

Joint ci ratio: 6.095449e-02	ci left: 1.964208e-02	ci right 2.088188e-02	k: 4051	n:200000
Cons ci ratio: 1.050813e-01	ci left: 6.546742e-03	ci right 7.277660e-03	k: 1381	n:200000
KS ci ratio: 1.951828e-02	ci left: 1.661895e-01	ci right 1.694701e-01	k: 33565	n:200000
OR2AE1   200000 perm   47 sec   (4282 perm/sec)   p_kst 1.678250e-01   p_cons 6.905000e-03   p_joint 2.025500e-02

Joint ci ratio: 5.938301e-02	ci left: 1.972455e-02	ci right 2.093636e-02	k: 4268	n:210000
Cons ci ratio: 1.025168e-01	ci left: 6.559674e-03	ci right 7.273086e-03	k: 1451	n:210000
KS ci ratio: 1.902951e-02	ci left: 1.664981e-01	ci right 1.697016e-01	k: 35300	n:210000
OR2AE1   210000 perm   50 sec   (4218 perm/sec)   p_kst 1.680952e-01   p_cons 6.909524e-03   p_joint 2.032381e-02

Joint ci ratio: 5.797991e-02	ci left: 1.976405e-02	ci right 2.094864e-02	k: 4477	n:220000
Cons ci ratio: 1.002974e-01	ci left: 6.549466e-03	ci right 7.245439e-03	k: 1516	n:220000
KS ci ratio: 1.859471e-02	ci left: 1.664942e-01	ci right 1.696237e-01	k: 36972	n:220000
OR2AE1   220000 perm   53 sec   (4159 perm/sec)   p_kst 1.680545e-01   p_cons 6.890909e-03   p_joint 2.035000e-02

Joint ci ratio: 5.658558e-02	ci left: 1.986045e-02	ci right 2.102125e-02	k: 4700	n:230000
Cons ci ratio: 9.784324e-02	ci left: 6.591201e-03	ci right 7.273487e-03	k: 1593	n:230000
KS ci ratio: 1.817880e-02	ci left: 1.666387e-01	ci right 1.697001e-01	k: 38678	n:230000
OR2AE1   230000 perm   56 sec   (4097 perm/sec)   p_kst 1.681652e-01   p_cons 6.926087e-03   p_joint 2.043478e-02

Outputting figure to mutsig2_images.part000000000121/OR2AE1.2_976_230000_0.16817_0.0069261_0.020435.png
                gene_name: OR2AE1
               theta_stop: 0.098 
                    nperm: 230000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.0069 
      ci_cons_bounds_left: 0.0066 
     ci_cons_bounds_right: 0.0073 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.021 

Current progress: 40 percent done.
OR2G6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.010152e-02	ci left: 9.328874e-01	ci right 9.424556e-01	k: 9378	n:10000
KS ci ratio: 4.900521e-02	ci left: 3.805230e-01	ci right 3.997410e-01	k: 3901	n:10000
OR2G6   10000 perm   1 sec   (6991 perm/sec)   p_kst 3.901000e-01   p_cons 9.378000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000121/OR2G6.2_955_10000_0.3901_0.9378_1.png
                gene_name: OR2G6
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
OR2M3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.403275e-02	ci left: 7.179511e-01	ci right 7.355166e-01	k: 7268	n:10000
Cons ci ratio: 1.738916e-02	ci left: 8.281881e-01	ci right 8.428159e-01	k: 8356	n:10000
KS ci ratio: 5.650599e-02	ci left: 3.156236e-01	ci right 3.340785e-01	k: 3248	n:10000
OR2M3   10000 perm   1 sec   (7069 perm/sec)   p_kst 3.248000e-01   p_cons 8.356000e-01   p_joint 7.268000e-01

Outputting figure to mutsig2_images.part000000000121/OR2M3.2_942_10000_0.3248_0.8356_0.7268.png
                gene_name: OR2M3
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 80 percent done.
OR4A16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.268333e-01	ci left: 1.861361e-03	ci right 4.044256e-03	k: 28	n:10000
Cons ci ratio: 8.347854e-01	ci left: 1.300388e-03	ci right 3.208291e-03	k: 21	n:10000
KS ci ratio: 7.435137e-02	ci left: 2.093488e-01	ci right 2.256161e-01	k: 2174	n:10000
OR4A16   10000 perm   1 sec   (6918 perm/sec)   p_kst 2.174000e-01   p_cons 2.100000e-03   p_joint 2.800000e-03

Joint ci ratio: 3.582663e-01	ci left: 4.885950e-03	ci right 7.061454e-03	k: 118	n:20000
Cons ci ratio: 4.373811e-01	ci left: 3.128462e-03	ci right 4.920482e-03	k: 79	n:20000
KS ci ratio: 5.237497e-02	ci left: 2.130369e-01	ci right 2.245450e-01	k: 4375	n:20000
OR4A16   20000 perm   3 sec   (5876 perm/sec)   p_kst 2.187500e-01   p_cons 3.950000e-03   p_joint 5.900000e-03

Joint ci ratio: 2.145953e-01	ci left: 9.819042e-03	ci right 1.221040e-02	k: 329	n:30000
Cons ci ratio: 3.484815e-01	ci left: 3.469451e-03	ci right 4.962414e-03	k: 125	n:30000
KS ci ratio: 4.268507e-02	ci left: 2.147277e-01	ci right 2.241267e-01	k: 6582	n:30000
OR4A16   30000 perm   5 sec   (5687 perm/sec)   p_kst 2.194000e-01   p_cons 4.166667e-03   p_joint 1.096667e-02

Joint ci ratio: 4.647996e-01	ci left: 1.364457e-03	ci right 2.210510e-03	k: 70	n:40000
Cons ci ratio: 3.749513e-01	ci left: 2.215372e-03	ci right 3.258905e-03	k: 108	n:40000
KS ci ratio: 3.699432e-02	ci left: 2.151041e-01	ci right 2.232367e-01	k: 8766	n:40000
OR4A16   40000 perm   7 sec   (5544 perm/sec)   p_kst 2.191500e-01   p_cons 2.700000e-03   p_joint 1.750000e-03

Joint ci ratio: 3.356764e-01	ci left: 2.264246e-03	ci right 3.194984e-03	k: 135	n:50000
Cons ci ratio: 3.381790e-01	ci left: 2.227623e-03	ci right 3.151624e-03	k: 133	n:50000
KS ci ratio: 3.298614e-02	ci left: 2.165941e-01	ci right 2.238785e-01	k: 11011	n:50000
OR4A16   50000 perm   9 sec   (5459 perm/sec)   p_kst 2.202200e-01   p_cons 2.660000e-03   p_joint 2.700000e-03

Joint ci ratio: 3.175484e-01	ci left: 2.131664e-03	ci right 2.950972e-03	k: 151	n:60000
Cons ci ratio: 3.124379e-01	ci left: 2.208423e-03	ci right 3.040850e-03	k: 156	n:60000
KS ci ratio: 3.015367e-02	ci left: 2.164420e-01	ci right 2.230851e-01	k: 13185	n:60000
OR4A16   60000 perm   11 sec   (5346 perm/sec)   p_kst 2.197500e-01   p_cons 2.600000e-03   p_joint 2.516667e-03

Joint ci ratio: 3.029745e-01	ci left: 2.024733e-03	ci right 2.760345e-03	k: 166	n:70000
Cons ci ratio: 2.918016e-01	ci left: 2.196625e-03	ci right 2.959826e-03	k: 179	n:70000
KS ci ratio: 2.796777e-02	ci left: 2.160688e-01	ci right 2.222117e-01	k: 15339	n:70000
OR4A16   70000 perm   13 sec   (5242 perm/sec)   p_kst 2.191286e-01   p_cons 2.557143e-03   p_joint 2.371429e-03

Joint ci ratio: 2.431808e-01	ci left: 2.843974e-03	ci right 3.642723e-03	k: 258	n:80000
Cons ci ratio: 2.747791e-01	ci left: 2.189137e-03	ci right 2.897708e-03	k: 202	n:80000
KS ci ratio: 2.611038e-02	ci left: 2.169344e-01	ci right 2.226860e-01	k: 17584	n:80000
OR4A16   80000 perm   16 sec   (5151 perm/sec)   p_kst 2.198000e-01   p_cons 2.525000e-03   p_joint 3.225000e-03

Joint ci ratio: 2.343189e-01	ci left: 2.736891e-03	ci right 3.473491e-03	k: 278	n:90000
Cons ci ratio: 2.633623e-01	ci left: 2.132404e-03	ci right 2.789210e-03	k: 220	n:90000
KS ci ratio: 2.458456e-02	ci left: 2.175516e-01	ci right 2.229776e-01	k: 19823	n:90000
OR4A16   90000 perm   18 sec   (5043 perm/sec)   p_kst 2.202556e-01   p_cons 2.444444e-03   p_joint 3.088889e-03

Joint ci ratio: 2.212234e-01	ci left: 2.783823e-03	ci right 3.485487e-03	k: 312	n:100000
Cons ci ratio: 2.543282e-01	ci left: 2.068776e-03	ci right 2.680659e-03	k: 236	n:100000
KS ci ratio: 2.332614e-02	ci left: 2.176448e-01	ci right 2.227915e-01	k: 22021	n:100000
OR4A16   100000 perm   20 sec   (4957 perm/sec)   p_kst 2.202100e-01   p_cons 2.360000e-03   p_joint 3.120000e-03

Joint ci ratio: 2.260115e-01	ci left: 2.419132e-03	ci right 3.043908e-03	k: 299	n:110000
Cons ci ratio: 2.409685e-01	ci left: 2.110943e-03	ci right 2.697603e-03	k: 263	n:110000
KS ci ratio: 2.222836e-02	ci left: 2.179533e-01	ci right 2.228615e-01	k: 24244	n:110000
OR4A16   110000 perm   23 sec   (4874 perm/sec)   p_kst 2.204000e-01   p_cons 2.390909e-03   p_joint 2.718182e-03

Joint ci ratio: 2.212814e-01	ci left: 2.319789e-03	ci right 2.904661e-03	k: 312	n:120000
Cons ci ratio: 2.339904e-01	ci left: 2.060426e-03	ci right 2.614064e-03	k: 279	n:120000
KS ci ratio: 2.126507e-02	ci left: 2.183313e-01	ci right 2.230323e-01	k: 26481	n:120000
OR4A16   120000 perm   25 sec   (4790 perm/sec)   p_kst 2.206750e-01   p_cons 2.325000e-03   p_joint 2.600000e-03

Joint ci ratio: 2.264377e-01	ci left: 2.039655e-03	ci right 2.567553e-03	k: 298	n:130000
Cons ci ratio: 2.238267e-01	ci left: 2.090471e-03	ci right 2.624422e-03	k: 305	n:130000
KS ci ratio: 2.041614e-02	ci left: 2.186703e-01	ci right 2.231883e-01	k: 28720	n:130000
OR4A16   130000 perm   28 sec   (4708 perm/sec)   p_kst 2.209231e-01   p_cons 2.346154e-03   p_joint 2.292308e-03

Joint ci ratio: 1.979652e-01	ci left: 2.516398e-03	ci right 3.075939e-03	k: 390	n:140000
Cons ci ratio: 2.148819e-01	ci left: 2.116669e-03	ci right 2.632858e-03	k: 331	n:140000
KS ci ratio: 1.964142e-02	ci left: 2.193128e-01	ci right 2.236702e-01	k: 31008	n:140000
OR4A16   140000 perm   30 sec   (4632 perm/sec)   p_kst 2.214857e-01   p_cons 2.364286e-03   p_joint 2.785714e-03

Joint ci ratio: 1.987496e-01	ci left: 2.329609e-03	ci right 2.849915e-03	k: 387	n:150000
Cons ci ratio: 2.054969e-01	ci left: 2.171357e-03	ci right 2.674851e-03	k: 362	n:150000
KS ci ratio: 1.899007e-02	ci left: 2.191216e-01	ci right 2.233292e-01	k: 33183	n:150000
OR4A16   150000 perm   33 sec   (4553 perm/sec)   p_kst 2.212200e-01   p_cons 2.413333e-03   p_joint 2.580000e-03

Joint ci ratio: 1.584128e-01	ci left: 3.510423e-03	ci right 4.120274e-03	k: 609	n:160000
Cons ci ratio: 1.972428e-01	ci left: 2.219637e-03	ci right 2.711169e-03	k: 393	n:160000
KS ci ratio: 1.837881e-02	ci left: 2.193426e-01	ci right 2.234175e-01	k: 35420	n:160000
OR4A16   160000 perm   36 sec   (4479 perm/sec)   p_kst 2.213750e-01   p_cons 2.456250e-03   p_joint 3.806250e-03

Joint ci ratio: 2.013982e-01	ci left: 1.999625e-03	ci right 2.452912e-03	k: 377	n:170000
Cons ci ratio: 1.919580e-01	ci left: 2.212176e-03	ci right 2.687399e-03	k: 415	n:170000
KS ci ratio: 1.782576e-02	ci left: 2.194868e-01	ci right 2.234403e-01	k: 37648	n:170000
OR4A16   170000 perm   39 sec   (4391 perm/sec)   p_kst 2.214588e-01   p_cons 2.441176e-03   p_joint 2.217647e-03

Joint ci ratio: 1.965215e-01	ci left: 1.988832e-03	ci right 2.427448e-03	k: 396	n:180000
Cons ci ratio: 1.875059e-01	ci left: 2.195109e-03	ci right 2.654484e-03	k: 435	n:180000
KS ci ratio: 1.731255e-02	ci left: 2.197606e-01	ci right 2.236039e-01	k: 39902	n:180000
OR4A16   180000 perm   42 sec   (4323 perm/sec)   p_kst 2.216778e-01   p_cons 2.416667e-03   p_joint 2.200000e-03

Joint ci ratio: 1.940985e-01	ci left: 1.934209e-03	ci right 2.354897e-03	k: 406	n:190000
Cons ci ratio: 1.841614e-01	ci left: 2.159867e-03	ci right 2.602903e-03	k: 451	n:190000
KS ci ratio: 1.685821e-02	ci left: 2.196607e-01	ci right 2.234005e-01	k: 42090	n:190000
OR4A16   190000 perm   45 sec   (4257 perm/sec)   p_kst 2.215263e-01   p_cons 2.373684e-03   p_joint 2.136842e-03

Joint ci ratio: 1.901697e-01	ci left: 1.918408e-03	ci right 2.326238e-03	k: 423	n:200000
Cons ci ratio: 1.804108e-01	ci left: 2.142537e-03	ci right 2.572090e-03	k: 470	n:200000
KS ci ratio: 1.643905e-02	ci left: 2.195470e-01	ci right 2.231910e-01	k: 44273	n:200000
OR4A16   200000 perm   48 sec   (4189 perm/sec)   p_kst 2.213650e-01   p_cons 2.350000e-03   p_joint 2.115000e-03

Joint ci ratio: 1.879710e-01	ci left: 1.872416e-03	ci right 2.265341e-03	k: 433	n:210000
Cons ci ratio: 1.759827e-01	ci left: 2.149701e-03	ci right 2.568987e-03	k: 494	n:210000
KS ci ratio: 1.605678e-02	ci left: 2.192933e-01	ci right 2.228477e-01	k: 46424	n:210000
OR4A16   210000 perm   51 sec   (4126 perm/sec)   p_kst 2.210667e-01   p_cons 2.352381e-03   p_joint 2.061905e-03

Joint ci ratio: 1.829784e-01	ci left: 1.891335e-03	ci right 2.276518e-03	k: 457	n:220000
Cons ci ratio: 1.705529e-01	ci left: 2.191139e-03	ci right 2.603965e-03	k: 526	n:220000
KS ci ratio: 1.568507e-02	ci left: 2.193900e-01	ci right 2.228628e-01	k: 48647	n:220000
OR4A16   220000 perm   54 sec   (4051 perm/sec)   p_kst 2.211227e-01   p_cons 2.390909e-03   p_joint 2.077273e-03

Joint ci ratio: 1.779939e-01	ci left: 1.917042e-03	ci right 2.295681e-03	k: 483	n:230000
Cons ci ratio: 1.663438e-01	ci left: 2.208316e-03	ci right 2.613082e-03	k: 553	n:230000
KS ci ratio: 1.533184e-02	ci left: 2.196178e-01	ci right 2.230153e-01	k: 50902	n:230000
OR4A16   230000 perm   58 sec   (3993 perm/sec)   p_kst 2.213130e-01   p_cons 2.404348e-03   p_joint 2.100000e-03

Joint ci ratio: 1.730559e-01	ci left: 1.948710e-03	ci right 2.321811e-03	k: 511	n:240000
Cons ci ratio: 1.620129e-01	ci left: 2.236170e-03	ci right 2.634332e-03	k: 583	n:240000
KS ci ratio: 1.500888e-02	ci left: 2.196571e-01	ci right 2.229830e-01	k: 53116	n:240000
OR4A16   240000 perm   61 sec   (3941 perm/sec)   p_kst 2.213167e-01   p_cons 2.429167e-03   p_joint 2.129167e-03

Joint ci ratio: 1.770947e-01	ci left: 1.782779e-03	ci right 2.132929e-03	k: 488	n:250000
Cons ci ratio: 1.586525e-01	ci left: 2.242712e-03	ci right 2.632967e-03	k: 608	n:250000
KS ci ratio: 1.470175e-02	ci left: 2.197817e-01	ci right 2.230408e-01	k: 55352	n:250000
OR4A16   250000 perm   64 sec   (3885 perm/sec)   p_kst 2.214080e-01   p_cons 2.432000e-03   p_joint 1.952000e-03

Joint ci ratio: 1.737516e-01	ci left: 1.784079e-03	ci right 2.127176e-03	k: 507	n:260000
Cons ci ratio: 1.558630e-01	ci left: 2.237739e-03	ci right 2.619642e-03	k: 630	n:260000
KS ci ratio: 1.442142e-02	ci left: 2.196902e-01	ci right 2.228852e-01	k: 57534	n:260000
OR4A16   260000 perm   68 sec   (3838 perm/sec)   p_kst 2.212846e-01   p_cons 2.423077e-03   p_joint 1.950000e-03

Joint ci ratio: 1.696261e-01	ci left: 1.806618e-03	ci right 2.144956e-03	k: 532	n:270000
Cons ci ratio: 1.525148e-01	ci left: 2.254564e-03	ci right 2.630318e-03	k: 658	n:270000
KS ci ratio: 1.414771e-02	ci left: 2.198203e-01	ci right 2.229561e-01	k: 59774	n:270000
OR4A16   270000 perm   71 sec   (3790 perm/sec)   p_kst 2.213852e-01   p_cons 2.437037e-03   p_joint 1.970370e-03

Joint ci ratio: 1.669848e-01	ci left: 1.800252e-03	ci right 2.131621e-03	k: 549	n:280000
Cons ci ratio: 1.498113e-01	ci left: 2.256516e-03	ci right 2.625332e-03	k: 682	n:280000
KS ci ratio: 1.389132e-02	ci left: 2.198846e-01	ci right 2.229640e-01	k: 61998	n:280000
OR4A16   280000 perm   75 sec   (3741 perm/sec)   p_kst 2.214214e-01   p_cons 2.435714e-03   p_joint 1.960714e-03

Joint ci ratio: 1.613564e-01	ci left: 1.867138e-03	ci right 2.198112e-03	k: 588	n:290000
Cons ci ratio: 1.473512e-01	ci left: 2.255067e-03	ci right 2.617060e-03	k: 705	n:290000
KS ci ratio: 1.364716e-02	ci left: 2.199760e-01	ci right 2.230020e-01	k: 64231	n:290000
OR4A16   290000 perm   78 sec   (3695 perm/sec)   p_kst 2.214862e-01   p_cons 2.431034e-03   p_joint 2.027586e-03

Joint ci ratio: 1.598730e-01	ci left: 1.840091e-03	ci right 2.162984e-03	k: 599	n:300000
Cons ci ratio: 1.457114e-01	ci left: 2.231274e-03	ci right 2.585115e-03	k: 721	n:300000
KS ci ratio: 1.342010e-02	ci left: 2.199419e-01	ci right 2.229168e-01	k: 66428	n:300000
OR4A16   300000 perm   82 sec   (3649 perm/sec)   p_kst 2.214267e-01   p_cons 2.403333e-03   p_joint 1.996667e-03

Joint ci ratio: 1.566416e-01	ci left: 1.858186e-03	ci right 2.177044e-03	k: 624	n:310000
Cons ci ratio: 1.427740e-01	ci left: 2.252581e-03	ci right 2.601986e-03	k: 751	n:310000
KS ci ratio: 1.319709e-02	ci left: 2.200907e-01	ci right 2.230177e-01	k: 68681	n:310000
OR4A16   310000 perm   87 sec   (3583 perm/sec)   p_kst 2.215516e-01   p_cons 2.422581e-03   p_joint 2.012903e-03

Joint ci ratio: 1.535986e-01	ci left: 1.875212e-03	ci right 2.190165e-03	k: 649	n:320000
Cons ci ratio: 1.402773e-01	ci left: 2.263576e-03	ci right 2.608033e-03	k: 778	n:320000
KS ci ratio: 1.298944e-02	ci left: 2.201090e-01	ci right 2.229898e-01	k: 70895	n:320000
OR4A16   320000 perm   91 sec   (3527 perm/sec)   p_kst 2.215469e-01   p_cons 2.431250e-03   p_joint 2.028125e-03

Joint ci ratio: 1.510630e-01	ci left: 1.882513e-03	ci right 2.193002e-03	k: 671	n:330000
Cons ci ratio: 1.380790e-01	ci left: 2.268103e-03	ci right 2.607396e-03	k: 803	n:330000
KS ci ratio: 1.278578e-02	ci left: 2.202746e-01	ci right 2.231121e-01	k: 73158	n:330000
OR4A16   330000 perm   95 sec   (3485 perm/sec)   p_kst 2.216909e-01   p_cons 2.433333e-03   p_joint 2.033333e-03

Joint ci ratio: 1.492971e-01	ci left: 1.872435e-03	ci right 2.177329e-03	k: 687	n:340000
Cons ci ratio: 1.366435e-01	ci left: 2.249674e-03	ci right 2.582427e-03	k: 820	n:340000
KS ci ratio: 1.259892e-02	ci left: 2.202254e-01	ci right 2.230205e-01	k: 75351	n:340000
OR4A16   340000 perm   99 sec   (3444 perm/sec)   p_kst 2.216206e-01   p_cons 2.411765e-03   p_joint 2.020588e-03

Joint ci ratio: 1.464497e-01	ci left: 1.893227e-03	ci right 2.195112e-03	k: 714	n:350000
Cons ci ratio: 1.342913e-01	ci left: 2.265448e-03	ci right 2.594305e-03	k: 849	n:350000
KS ci ratio: 1.241406e-02	ci left: 2.203447e-01	ci right 2.230999e-01	k: 77602	n:350000
OR4A16   350000 perm   103 sec   (3406 perm/sec)   p_kst 2.217200e-01   p_cons 2.425714e-03   p_joint 2.040000e-03

Joint ci ratio: 1.445421e-01	ci left: 1.891494e-03	ci right 2.188835e-03	k: 733	n:360000
Cons ci ratio: 1.325869e-01	ci left: 2.261590e-03	ci right 2.585391e-03	k: 871	n:360000
KS ci ratio: 1.225011e-02	ci left: 2.200917e-01	ci right 2.228072e-01	k: 79721	n:360000
OR4A16   360000 perm   107 sec   (3368 perm/sec)   p_kst 2.214472e-01   p_cons 2.419444e-03   p_joint 2.036111e-03

Joint ci ratio: 1.454422e-01	ci left: 1.816925e-03	ci right 2.104478e-03	k: 724	n:370000
Cons ci ratio: 1.311665e-01	ci left: 2.250122e-03	ci right 2.568562e-03	k: 890	n:370000
KS ci ratio: 1.208253e-02	ci left: 2.201358e-01	ci right 2.228145e-01	k: 81945	n:370000
OR4A16   370000 perm   111 sec   (3327 perm/sec)   p_kst 2.214730e-01   p_cons 2.405405e-03   p_joint 1.956757e-03

Joint ci ratio: 1.433803e-01	ci left: 1.822378e-03	ci right 2.106355e-03	k: 745	n:380000
Cons ci ratio: 1.294349e-01	ci left: 2.252007e-03	ci right 2.566183e-03	k: 914	n:380000
KS ci ratio: 1.192466e-02	ci left: 2.200912e-01	ci right 2.227341e-01	k: 84136	n:380000
OR4A16   380000 perm   116 sec   (3290 perm/sec)   p_kst 2.214105e-01   p_cons 2.405263e-03   p_joint 1.960526e-03

Joint ci ratio: 1.421483e-01	ci left: 1.807792e-03	ci right 2.086870e-03	k: 758	n:390000
Cons ci ratio: 1.281813e-01	ci left: 2.238929e-03	ci right 2.548025e-03	k: 932	n:390000
KS ci ratio: 1.177535e-02	ci left: 2.199749e-01	ci right 2.225831e-01	k: 86298	n:390000
OR4A16   390000 perm   120 sec   (3255 perm/sec)   p_kst 2.212769e-01   p_cons 2.389744e-03   p_joint 1.943590e-03

Joint ci ratio: 1.404019e-01	ci left: 1.808419e-03	ci right 2.083876e-03	k: 777	n:400000
Cons ci ratio: 1.266301e-01	ci left: 2.238623e-03	ci right 2.543656e-03	k: 955	n:400000
KS ci ratio: 1.162493e-02	ci left: 2.200592e-01	ci right 2.226348e-01	k: 88538	n:400000
OR4A16   400000 perm   124 sec   (3221 perm/sec)   p_kst 2.213450e-01   p_cons 2.387500e-03   p_joint 1.942500e-03

Joint ci ratio: 1.381981e-01	ci left: 1.823162e-03	ci right 2.096148e-03	k: 802	n:410000
Cons ci ratio: 1.248148e-01	ci left: 2.250169e-03	ci right 2.552054e-03	k: 983	n:410000
KS ci ratio: 1.148452e-02	ci left: 2.200082e-01	ci right 2.225519e-01	k: 90724	n:410000
OR4A16   410000 perm   129 sec   (3188 perm/sec)   p_kst 2.212780e-01   p_cons 2.397561e-03   p_joint 1.956098e-03

Joint ci ratio: 1.361773e-01	ci left: 1.834936e-03	ci right 2.105342e-03	k: 826	n:420000
Cons ci ratio: 1.231975e-01	ci left: 2.256578e-03	ci right 2.555115e-03	k: 1009	n:420000
KS ci ratio: 1.134680e-02	ci left: 2.200287e-01	ci right 2.225419e-01	k: 92939	n:420000
OR4A16   420000 perm   133 sec   (3155 perm/sec)   p_kst 2.212833e-01   p_cons 2.402381e-03   p_joint 1.966667e-03

Joint ci ratio: 1.350400e-01	ci left: 1.823716e-03	ci right 2.090043e-03	k: 840	n:430000
Cons ci ratio: 1.221151e-01	ci left: 2.244675e-03	ci right 2.538839e-03	k: 1027	n:430000
KS ci ratio: 1.121415e-02	ci left: 2.200414e-01	ci right 2.225252e-01	k: 95151	n:430000
OR4A16   430000 perm   138 sec   (3114 perm/sec)   p_kst 2.212814e-01   p_cons 2.388372e-03   p_joint 1.953488e-03

Joint ci ratio: 1.332300e-01	ci left: 1.832787e-03	ci right 2.096568e-03	k: 863	n:440000
Cons ci ratio: 1.204275e-01	ci left: 2.257570e-03	ci right 2.549044e-03	k: 1056	n:440000
KS ci ratio: 1.108707e-02	ci left: 2.200219e-01	ci right 2.224772e-01	k: 97349	n:440000
OR4A16   440000 perm   143 sec   (3084 perm/sec)   p_kst 2.212477e-01   p_cons 2.400000e-03   p_joint 1.961364e-03

Joint ci ratio: 1.317142e-01	ci left: 1.835030e-03	ci right 2.095894e-03	k: 883	n:450000
Cons ci ratio: 1.190280e-01	ci left: 2.261294e-03	ci right 2.549617e-03	k: 1081	n:450000
KS ci ratio: 1.096415e-02	ci left: 2.200057e-01	ci right 2.224334e-01	k: 99548	n:450000
OR4A16   450000 perm   147 sec   (3054 perm/sec)   p_kst 2.212178e-01   p_cons 2.402222e-03   p_joint 1.962222e-03

Joint ci ratio: 1.302489e-01	ci left: 1.837192e-03	ci right 2.095233e-03	k: 903	n:460000
Cons ci ratio: 1.177295e-01	ci left: 2.262764e-03	ci right 2.547909e-03	k: 1105	n:460000
KS ci ratio: 1.084597e-02	ci left: 2.199665e-01	ci right 2.223674e-01	k: 101736	n:460000
OR4A16   460000 perm   152 sec   (3023 perm/sec)   p_kst 2.211652e-01   p_cons 2.402174e-03   p_joint 1.963043e-03

Joint ci ratio: 1.282764e-01	ci left: 1.855752e-03	ci right 2.112152e-03	k: 931	n:470000
Cons ci ratio: 1.159594e-01	ci left: 2.284848e-03	ci right 2.568150e-03	k: 1139	n:470000
KS ci ratio: 1.072544e-02	ci left: 2.201245e-01	ci right 2.225002e-01	k: 104016	n:470000
OR4A16   470000 perm   157 sec   (2989 perm/sec)   p_kst 2.213106e-01   p_cons 2.423404e-03   p_joint 1.980851e-03

Joint ci ratio: 1.275950e-01	ci left: 1.837256e-03	ci right 2.089650e-03	k: 941	n:480000
Cons ci ratio: 1.151052e-01	ci left: 2.271639e-03	ci right 2.551088e-03	k: 1156	n:480000
KS ci ratio: 1.061147e-02	ci left: 2.201907e-01	ci right 2.225418e-01	k: 106255	n:480000
OR4A16   480000 perm   162 sec   (2961 perm/sec)   p_kst 2.213646e-01   p_cons 2.408333e-03   p_joint 1.960417e-03

Joint ci ratio: 1.263933e-01	ci left: 1.835328e-03	ci right 2.084905e-03	k: 959	n:490000
Cons ci ratio: 1.140750e-01	ci left: 2.266908e-03	ci right 2.543110e-03	k: 1177	n:490000
KS ci ratio: 1.050317e-02	ci left: 2.201852e-01	ci right 2.225120e-01	k: 108460	n:490000
OR4A16   490000 perm   167 sec   (2932 perm/sec)   p_kst 2.213469e-01   p_cons 2.402041e-03   p_joint 1.957143e-03

Joint ci ratio: 1.249055e-01	ci left: 1.843176e-03	ci right 2.090651e-03	k: 982	n:500000
Cons ci ratio: 1.128363e-01	ci left: 2.272094e-03	ci right 2.545723e-03	k: 1203	n:500000
KS ci ratio: 1.040066e-02	ci left: 2.200961e-01	ci right 2.223992e-01	k: 110623	n:500000
OR4A16   500000 perm   172 sec   (2903 perm/sec)   p_kst 2.212460e-01   p_cons 2.406000e-03   p_joint 1.964000e-03

Joint ci ratio: 1.237157e-01	ci left: 1.843132e-03	ci right 2.088071e-03	k: 1001	n:510000
Cons ci ratio: 1.117282e-01	ci left: 2.273281e-03	ci right 2.544186e-03	k: 1227	n:510000
KS ci ratio: 1.029798e-02	ci left: 2.201143e-01	ci right 2.223947e-01	k: 112839	n:510000
OR4A16   510000 perm   177 sec   (2874 perm/sec)   p_kst 2.212529e-01   p_cons 2.405882e-03   p_joint 1.962745e-03

Joint ci ratio: 1.231650e-01	ci left: 1.824459e-03	ci right 2.065759e-03	k: 1010	n:520000
Cons ci ratio: 1.111427e-01	ci left: 2.253866e-03	ci right 2.520958e-03	k: 1240	n:520000
KS ci ratio: 1.020039e-02	ci left: 2.200610e-01	ci right 2.223191e-01	k: 115018	n:520000
OR4A16   520000 perm   183 sec   (2843 perm/sec)   p_kst 2.211885e-01   p_cons 2.384615e-03   p_joint 1.942308e-03

Joint ci ratio: 1.223815e-01	ci left: 1.813810e-03	ci right 2.052064e-03	k: 1023	n:530000
Cons ci ratio: 1.104780e-01	ci left: 2.238856e-03	ci right 2.502480e-03	k: 1255	n:530000
KS ci ratio: 1.010574e-02	ci left: 2.200022e-01	ci right 2.222386e-01	k: 117193	n:530000
OR4A16   530000 perm   188 sec   (2815 perm/sec)   p_kst 2.211189e-01   p_cons 2.367925e-03   p_joint 1.930189e-03

Joint ci ratio: 1.203974e-01	ci left: 1.841274e-03	ci right 2.078935e-03	k: 1057	n:540000
Cons ci ratio: 1.088844e-01	ci left: 2.264037e-03	ci right 2.526533e-03	k: 1292	n:540000
KS ci ratio: 1.001385e-02	ci left: 2.199401e-01	ci right 2.221555e-01	k: 119365	n:540000
OR4A16   540000 perm   194 sec   (2790 perm/sec)   p_kst 2.210463e-01   p_cons 2.392593e-03   p_joint 1.957407e-03

Joint ci ratio: 1.321125e-01	ci left: 1.492580e-03	ci right 1.705453e-03	k: 878	n:550000
Cons ci ratio: 1.078467e-01	ci left: 2.267095e-03	ci right 2.527282e-03	k: 1317	n:550000
KS ci ratio: 9.924304e-03	ci left: 2.198840e-01	ci right 2.220789e-01	k: 121539	n:550000
OR4A16   550000 perm   199 sec   (2765 perm/sec)   p_kst 2.209800e-01   p_cons 2.394545e-03   p_joint 1.596364e-03

Joint ci ratio: 1.307071e-01	ci left: 1.498740e-03	ci right 1.710041e-03	k: 897	n:560000
Cons ci ratio: 1.066393e-01	ci left: 2.278746e-03	ci right 2.537159e-03	k: 1347	n:560000
KS ci ratio: 9.832634e-03	ci left: 2.199869e-01	ci right 2.221624e-01	k: 123801	n:560000
OR4A16   560000 perm   204 sec   (2739 perm/sec)   p_kst 2.210732e-01   p_cons 2.405357e-03   p_joint 1.601786e-03

Joint ci ratio: 1.293455e-01	ci left: 1.504696e-03	ci right 1.714457e-03	k: 916	n:570000
Cons ci ratio: 1.056639e-01	ci left: 2.281464e-03	ci right 2.537671e-03	k: 1372	n:570000
KS ci ratio: 9.746287e-03	ci left: 2.199864e-01	ci right 2.221427e-01	k: 126006	n:570000
OR4A16   570000 perm   210 sec   (2716 perm/sec)   p_kst 2.210632e-01   p_cons 2.407018e-03   p_joint 1.607018e-03

Joint ci ratio: 1.284387e-01	ci left: 1.500444e-03	ci right 1.708034e-03	k: 929	n:580000
Cons ci ratio: 1.048653e-01	ci left: 2.277381e-03	ci right 2.531078e-03	k: 1393	n:580000
KS ci ratio: 9.662079e-03	ci left: 2.199895e-01	ci right 2.221271e-01	k: 128213	n:580000
OR4A16   580000 perm   216 sec   (2691 perm/sec)   p_kst 2.210569e-01   p_cons 2.401724e-03   p_joint 1.601724e-03

Joint ci ratio: 1.276184e-01	ci left: 1.494700e-03	ci right 1.700074e-03	k: 941	n:590000
Cons ci ratio: 1.041583e-01	ci left: 2.270143e-03	ci right 2.521224e-03	k: 1412	n:590000
KS ci ratio: 9.578979e-03	ci left: 2.200298e-01	ci right 2.221492e-01	k: 130442	n:590000
OR4A16   590000 perm   221 sec   (2667 perm/sec)   p_kst 2.210881e-01   p_cons 2.393220e-03   p_joint 1.594915e-03

Joint ci ratio: 1.261531e-01	ci left: 1.505291e-03	ci right 1.709569e-03	k: 963	n:600000
Cons ci ratio: 1.029979e-01	ci left: 2.284260e-03	ci right 2.533917e-03	k: 1444	n:600000
KS ci ratio: 9.499871e-03	ci left: 2.200006e-01	ci right 2.221021e-01	k: 132630	n:600000
OR4A16   600000 perm   227 sec   (2643 perm/sec)   p_kst 2.210500e-01   p_cons 2.406667e-03   p_joint 1.605000e-03

Joint ci ratio: 1.250552e-01	ci left: 1.507608e-03	ci right 1.710287e-03	k: 980	n:610000
Cons ci ratio: 1.021879e-01	ci left: 2.283550e-03	ci right 2.531049e-03	k: 1467	n:610000
KS ci ratio: 9.424666e-03	ci left: 2.199004e-01	ci right 2.219843e-01	k: 134774	n:610000
OR4A16   610000 perm   233 sec   (2614 perm/sec)   p_kst 2.209410e-01   p_cons 2.404918e-03   p_joint 1.606557e-03

Joint ci ratio: 1.239854e-01	ci left: 1.509857e-03	ci right 1.710975e-03	k: 997	n:620000
Cons ci ratio: 1.013968e-01	ci left: 2.282871e-03	ci right 2.528267e-03	k: 1490	n:620000
KS ci ratio: 9.351218e-03	ci left: 2.198035e-01	ci right 2.218701e-01	k: 136918	n:620000
OR4A16   620000 perm   239 sec   (2590 perm/sec)   p_kst 2.208355e-01   p_cons 2.403226e-03   p_joint 1.608065e-03

Joint ci ratio: 1.229427e-01	ci left: 1.512042e-03	ci right 1.711634e-03	k: 1014	n:630000
Cons ci ratio: 1.005572e-01	ci left: 2.285316e-03	ci right 2.528820e-03	k: 1515	n:630000
KS ci ratio: 9.278347e-03	ci left: 2.197509e-01	ci right 2.218009e-01	k: 139088	n:630000
OR4A16   630000 perm   245 sec   (2567 perm/sec)   p_kst 2.207746e-01   p_cons 2.404762e-03   p_joint 1.609524e-03

Joint ci ratio: 1.249961e-01	ci left: 1.438449e-03	ci right 1.631733e-03	k: 981	n:640000
Cons ci ratio: 9.977052e-02	ci left: 2.286168e-03	ci right 2.527746e-03	k: 1539	n:640000
KS ci ratio: 9.203601e-03	ci left: 2.198326e-01	ci right 2.218668e-01	k: 141343	n:640000
OR4A16   640000 perm   252 sec   (2543 perm/sec)   p_kst 2.208484e-01   p_cons 2.404688e-03   p_joint 1.532813e-03

Joint ci ratio: 1.243023e-01	ci left: 1.432714e-03	ci right 1.624080e-03	k: 992	n:650000
Cons ci ratio: 9.909738e-02	ci left: 2.282500e-03	ci right 2.521969e-03	k: 1560	n:650000
KS ci ratio: 9.131774e-03	ci left: 2.198689e-01	ci right 2.218874e-01	k: 143570	n:650000
OR4A16   650000 perm   258 sec   (2518 perm/sec)   p_kst 2.208769e-01   p_cons 2.400000e-03   p_joint 1.526154e-03

Joint ci ratio: 1.236816e-01	ci left: 1.425688e-03	ci right 1.615094e-03	k: 1002	n:660000
Cons ci ratio: 9.853138e-02	ci left: 2.274515e-03	ci right 2.511704e-03	k: 1578	n:660000
KS ci ratio: 9.062840e-03	ci left: 2.198573e-01	ci right 2.218603e-01	k: 145766	n:660000
OR4A16   660000 perm   264 sec   (2496 perm/sec)   p_kst 2.208576e-01   p_cons 2.390909e-03   p_joint 1.518182e-03

Joint ci ratio: 1.228274e-01	ci left: 1.424660e-03	ci right 1.612528e-03	k: 1016	n:670000
Cons ci ratio: 9.779099e-02	ci left: 2.275509e-03	ci right 2.510916e-03	k: 1602	n:670000
KS ci ratio: 8.994196e-03	ci left: 2.198937e-01	ci right 2.218819e-01	k: 147994	n:670000
OR4A16   670000 perm   271 sec   (2474 perm/sec)   p_kst 2.208866e-01   p_cons 2.391045e-03   p_joint 1.516418e-03

Joint ci ratio: 1.221094e-01	ci left: 1.420815e-03	ci right 1.607002e-03	k: 1028	n:680000
Cons ci ratio: 9.721689e-02	ci left: 2.269305e-03	ci right 2.502614e-03	k: 1621	n:680000
KS ci ratio: 8.925982e-03	ci left: 2.199717e-01	ci right 2.219454e-01	k: 150251	n:680000
OR4A16   680000 perm   277 sec   (2452 perm/sec)   p_kst 2.209574e-01   p_cons 2.383824e-03   p_joint 1.511765e-03

Joint ci ratio: 1.210550e-01	ci left: 1.425518e-03	ci right 1.610592e-03	k: 1046	n:690000
Cons ci ratio: 9.632970e-02	ci left: 2.278843e-03	ci right 2.510874e-03	k: 1651	n:690000
KS ci ratio: 8.863326e-03	ci left: 2.198912e-01	ci right 2.218503e-01	k: 152400	n:690000
OR4A16   690000 perm   284 sec   (2431 perm/sec)   p_kst 2.208696e-01   p_cons 2.392754e-03   p_joint 1.515942e-03

Joint ci ratio: 1.199710e-01	ci left: 1.431478e-03	ci right 1.615544e-03	k: 1065	n:700000
Cons ci ratio: 9.563750e-02	ci left: 2.279751e-03	ci right 2.510112e-03	k: 1675	n:700000
KS ci ratio: 8.802299e-03	ci left: 2.198002e-01	ci right 2.217449e-01	k: 154540	n:700000
OR4A16   700000 perm   290 sec   (2410 perm/sec)   p_kst 2.207714e-01   p_cons 2.392857e-03   p_joint 1.521429e-03

Joint ci ratio: 1.191910e-01	ci left: 1.430445e-03	ci right 1.613098e-03	k: 1079	n:710000
Cons ci ratio: 9.482033e-02	ci left: 2.287514e-03	ci right 2.516576e-03	k: 1704	n:710000
KS ci ratio: 8.739473e-03	ci left: 2.198314e-01	ci right 2.217624e-01	k: 156765	n:710000
OR4A16   710000 perm   297 sec   (2387 perm/sec)   p_kst 2.207958e-01   p_cons 2.400000e-03   p_joint 1.519718e-03

Joint ci ratio: 1.185889e-01	ci left: 1.425401e-03	ci right 1.606426e-03	k: 1090	n:720000
Cons ci ratio: 9.437906e-02	ci left: 2.277439e-03	ci right 2.504372e-03	k: 1720	n:720000
KS ci ratio: 8.678149e-03	ci left: 2.198548e-01	ci right 2.217724e-01	k: 158985	n:720000
OR4A16   720000 perm   305 sec   (2364 perm/sec)   p_kst 2.208125e-01   p_cons 2.388889e-03   p_joint 1.513889e-03

Joint ci ratio: 1.176755e-01	ci left: 1.428474e-03	ci right 1.608395e-03	k: 1107	n:730000
Cons ci ratio: 9.359347e-02	ci left: 2.285034e-03	ci right 2.510724e-03	k: 1749	n:730000
KS ci ratio: 8.617343e-03	ci left: 2.199077e-01	ci right 2.218123e-01	k: 161227	n:730000
OR4A16   730000 perm   311 sec   (2344 perm/sec)   p_kst 2.208589e-01   p_cons 2.395890e-03   p_joint 1.516438e-03

Joint ci ratio: 1.168870e-01	ci left: 1.428846e-03	ci right 1.607525e-03	k: 1122	n:740000
Cons ci ratio: 9.290573e-02	ci left: 2.288471e-03	ci right 2.512750e-03	k: 1775	n:740000
KS ci ratio: 8.559814e-03	ci left: 2.198783e-01	ci right 2.217698e-01	k: 163409	n:740000
OR4A16   740000 perm   318 sec   (2325 perm/sec)   p_kst 2.208230e-01   p_cons 2.398649e-03   p_joint 1.516216e-03

Joint ci ratio: 1.161652e-01	ci left: 1.427918e-03	ci right 1.605302e-03	k: 1136	n:750000
Cons ci ratio: 9.238724e-02	ci left: 2.284007e-03	ci right 2.506531e-03	k: 1795	n:750000
KS ci ratio: 8.505069e-03	ci left: 2.197831e-01	ci right 2.216617e-01	k: 165541	n:750000
OR4A16   750000 perm   325 sec   (2307 perm/sec)   p_kst 2.207213e-01   p_cons 2.393333e-03   p_joint 1.514667e-03

Joint ci ratio: 1.128829e-01	ci left: 1.494765e-03	ci right 1.674858e-03	k: 1203	n:760000
Cons ci ratio: 9.192809e-02	ci left: 2.277092e-03	ci right 2.497781e-03	k: 1813	n:760000
KS ci ratio: 8.450683e-03	ci left: 2.197181e-01	ci right 2.215840e-01	k: 167694	n:760000
OR4A16   760000 perm   332 sec   (2289 perm/sec)   p_kst 2.206500e-01   p_cons 2.385526e-03   p_joint 1.582895e-03

Joint ci ratio: 1.121863e-01	ci left: 1.494285e-03	ci right 1.673135e-03	k: 1218	n:770000
Cons ci ratio: 9.135084e-02	ci left: 2.276705e-03	ci right 2.495896e-03	k: 1836	n:770000
KS ci ratio: 8.397865e-03	ci left: 2.196327e-01	ci right 2.214862e-01	k: 169830	n:770000
OR4A16   770000 perm   339 sec   (2271 perm/sec)   p_kst 2.205584e-01   p_cons 2.384416e-03   p_joint 1.581818e-03

Joint ci ratio: 1.115477e-01	ci left: 1.492574e-03	ci right 1.670135e-03	k: 1232	n:780000
Cons ci ratio: 9.088234e-02	ci left: 2.271320e-03	ci right 2.488812e-03	k: 1855	n:780000
KS ci ratio: 8.343784e-03	ci left: 2.196418e-01	ci right 2.214834e-01	k: 172038	n:780000
OR4A16   780000 perm   346 sec   (2253 perm/sec)   p_kst 2.205615e-01   p_cons 2.378205e-03   p_joint 1.579487e-03

Joint ci ratio: 1.110538e-01	ci left: 1.487216e-03	ci right 1.663306e-03	k: 1243	n:790000
Cons ci ratio: 9.039681e-02	ci left: 2.267312e-03	ci right 2.483199e-03	k: 1875	n:790000
KS ci ratio: 8.290521e-03	ci left: 2.196595e-01	ci right 2.214894e-01	k: 174253	n:790000
OR4A16   790000 perm   354 sec   (2234 perm/sec)   p_kst 2.205734e-01   p_cons 2.373418e-03   p_joint 1.573418e-03

Joint ci ratio: 1.101714e-01	ci left: 1.492935e-03	ci right 1.668206e-03	k: 1263	n:800000
Cons ci ratio: 8.970582e-02	ci left: 2.274404e-03	ci right 2.489224e-03	k: 1904	n:800000
KS ci ratio: 8.239194e-03	ci left: 2.196381e-01	ci right 2.214564e-01	k: 176437	n:800000
OR4A16   800000 perm   361 sec   (2217 perm/sec)   p_kst 2.205462e-01   p_cons 2.380000e-03   p_joint 1.578750e-03

Joint ci ratio: 1.094807e-01	ci left: 1.493714e-03	ci right 1.667906e-03	k: 1279	n:810000
Cons ci ratio: 8.905351e-02	ci left: 2.280121e-03	ci right 2.493833e-03	k: 1932	n:810000
KS ci ratio: 8.186280e-03	ci left: 2.197233e-01	ci right 2.215306e-01	k: 178707	n:810000
OR4A16   810000 perm   368 sec   (2200 perm/sec)   p_kst 2.206259e-01   p_cons 2.385185e-03   p_joint 1.579012e-03

Joint ci ratio: 1.086768e-01	ci left: 1.498037e-03	ci right 1.671368e-03	k: 1298	n:820000
Cons ci ratio: 8.848310e-02	ci left: 2.282125e-03	ci right 2.494585e-03	k: 1957	n:820000
KS ci ratio: 8.135353e-03	ci left: 2.197650e-01	ci right 2.215614e-01	k: 180943	n:820000
OR4A16   820000 perm   376 sec   (2182 perm/sec)   p_kst 2.206622e-01   p_cons 2.386585e-03   p_joint 1.582927e-03

Joint ci ratio: 1.079725e-01	ci left: 1.499915e-03	ci right 1.672268e-03	k: 1315	n:830000
Cons ci ratio: 8.781261e-02	ci left: 2.289978e-03	ci right 2.501470e-03	k: 1987	n:830000
KS ci ratio: 8.084826e-03	ci left: 2.198286e-01	ci right 2.216143e-01	k: 183198	n:830000
OR4A16   830000 perm   383 sec   (2165 perm/sec)   p_kst 2.207205e-01   p_cons 2.393976e-03   p_joint 1.584337e-03

Joint ci ratio: 1.071610e-01	ci left: 1.505228e-03	ci right 1.676809e-03	k: 1335	n:840000
Cons ci ratio: 8.717879e-02	ci left: 2.296485e-03	ci right 2.506970e-03	k: 2016	n:840000
KS ci ratio: 8.036648e-03	ci left: 2.198301e-01	ci right 2.216051e-01	k: 185402	n:840000
OR4A16   840000 perm   391 sec   (2147 perm/sec)   p_kst 2.207167e-01   p_cons 2.400000e-03   p_joint 1.589286e-03

Joint ci ratio: 1.066041e-01	ci left: 1.503550e-03	ci right 1.673993e-03	k: 1349	n:850000
Cons ci ratio: 8.679268e-02	ci left: 2.290183e-03	ci right 2.499113e-03	k: 2034	n:850000
KS ci ratio: 7.988747e-03	ci left: 2.198563e-01	ci right 2.216209e-01	k: 187627	n:850000
OR4A16   850000 perm   399 sec   (2131 perm/sec)   p_kst 2.207376e-01   p_cons 2.392941e-03   p_joint 1.587059e-03

Joint ci ratio: 9.520461e-02	ci left: 1.873753e-03	ci right 2.062185e-03	k: 1691	n:860000
Cons ci ratio: 8.615962e-02	ci left: 2.297683e-03	ci right 2.505691e-03	k: 2064	n:860000
KS ci ratio: 7.941934e-03	ci left: 2.198715e-01	ci right 2.216258e-01	k: 189843	n:860000
OR4A16   860000 perm   407 sec   (2115 perm/sec)   p_kst 2.207477e-01   p_cons 2.400000e-03   p_joint 1.966279e-03

Outputting figure to mutsig2_images.part000000000121/OR4A16.2_989_860000_0.22075_0.0024_0.0019663.png
                gene_name: OR4A16
               theta_stop: 0.095 
                    nperm: 860000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.0024 
      ci_cons_bounds_left: 0.0023 
     ci_cons_bounds_right: 0.0025 
                  p_joint: 0.0020 
     ci_joint_bounds_left: 0.0019 
    ci_joint_bounds_right: 0.0021 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000121
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 121 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1709>
Subject: Job 9877766: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1709>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000122> was used as the working directory.
Started at Fri Oct  5 22:50:12 2012
Results reported at Fri Oct  5 22:52:03 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000122.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000122.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 122  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000122.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    111.10 sec.
    Max Memory :      1912 MB
    Max Swap   :      4630 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
122
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 122
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 122: processing genes 10972 - 11062
Calculating significance of each gene.
Using projection method.
10972	OR4F5	1
10973	OR4F6	1
10974	OR4K1	1
10975	OR4K13	1
10976	OR4K14	1
10977	OR4K15	1
10978	OR4K17	1
10979	OR4K2	1
10980	OR4K5	1
10981	OR4L1	1
10982	OR4M1	1
10983	OR4M2	9.618782e-02
10984	OR4N2	8.284953e-02
10985	OR4N4	1
10986	OR4N5	1
10987	OR4P4	1
10988	OR4Q3	1
10989	OR4S1	1
10990	OR4S2	1
10991	OR4X1	1.584222e-02
10992	OR4X2	1
10993	OR51A2	1
10994	OR51A4	1
10995	OR51A7	1
10996	OR51B2	1
10997	OR51B4	1
10998	OR51B5	1
10999	OR51B6	1
11000/18134 11000	OR51D1	2.317069e-02
11001	OR51E1	1
11002	OR51E2	1
11003	OR51F1	1
11004	OR51F2	1
11005	OR51G1	1
11006	OR51G2	1
11007	OR51I1	1
11008	OR51I2	1
11009	OR51L1	1
11010	OR51M1	1
11011	OR51Q1	1
11012	OR51S1	1
11013	OR51T1	1
11014	OR51V1	1
11015	OR52A1	2.031661e-04
11016	OR52A4	1
11017	OR52A5	1
11018	OR52B2	1
11019	OR52B4	1
11020	OR52B6	1
11021	OR52D1	1.000173e-01
11022	OR52E2	1
11023	OR52E4	1
11024	OR52E6	6.203389e-02
11025	OR52E8	1
11026	OR52H1	1
11027	OR52I1	1
11028	OR52I2	1
11029	OR52J3	1
11030	OR52K1	1
11031	OR52K2	1
11032	OR52L1	1
11033	OR52M1	1
11034	OR52N1	1
11035	OR52N2	1
11036	OR52N4	1
11037	OR52N5	1
11038	OR52R1	9.847579e-02
11039	OR52W1	1
11040	OR56A1	1
11041	OR56A3	1
11042	OR56A4	1
11043	OR56A5	1
11044	OR56B1	1
11045	OR56B4	1
11046	OR5A1	1
11047	OR5A2	1
11048	OR5AC2	1
11049	OR5AK2	1
11050	OR5AN1	1
11051	OR5AP2	1
11052	OR5AR1	1
11053	OR5AS1	1.885303e-03
11054	OR5AU1	1
11055	OR5B12	7.336522e-04
11056	OR5B17	2.048414e-02
11057	OR5B2	1
11058	OR5B21	1
11059	OR5B3	1
11060	OR5C1	1
11061	OR5D13	1
11062	OR5D14	1
Done

Running MutSig 2:
Scatter job 122: processing genes 10972 - 11062
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
OR52A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.418404e-02	ci left: 7.154271e-01	ci right 7.330421e-01	k: 7243	n:10000
Cons ci ratio: 3.215005e-02	ci left: 5.881121e-01	ci right 6.074309e-01	k: 5978	n:10000
KS ci ratio: 4.427870e-02	ci left: 4.295415e-01	ci right 4.490938e-01	k: 4393	n:10000
OR52A1   10000 perm   2 sec   (6565 perm/sec)   p_kst 4.393000e-01   p_cons 5.978000e-01   p_joint 7.243000e-01

Outputting figure to mutsig2_images.part000000000122/OR52A1.2_941_10000_0.4393_0.5978_0.7243.png
                gene_name: OR52A1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 33 percent done.
OR5AS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.253351e-02	ci left: 4.493959e-01	ci right 4.690278e-01	k: 4592	n:10000
Cons ci ratio: 6.196701e-02	ci left: 2.768594e-01	ci right 2.946656e-01	k: 2857	n:10000
KS ci ratio: 5.319849e-02	ci left: 3.424348e-01	ci right 3.612516e-01	k: 3518	n:10000
OR5AS1   10000 perm   2 sec   (6665 perm/sec)   p_kst 3.518000e-01   p_cons 2.857000e-01   p_joint 4.592000e-01

Outputting figure to mutsig2_images.part000000000122/OR5AS1.2_977_10000_0.3518_0.2857_0.4592.png
                gene_name: OR5AS1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 67 percent done.
OR5B12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.252124e-02	ci left: 1.764483e-01	ci right 1.917362e-01	k: 1840	n:10000
Cons ci ratio: 1.215513e-01	ci left: 8.844634e-02	ci right 9.999129e-02	k: 941	n:10000
KS ci ratio: 2.115201e-02	ci left: 7.661798e-01	ci right 7.826601e-01	k: 7745	n:10000
OR5B12   10000 perm   1 sec   (6691 perm/sec)   p_kst 7.745000e-01   p_cons 9.410000e-02   p_joint 1.840000e-01

Joint ci ratio: 5.810085e-02	ci left: 1.799857e-01	ci right 1.908060e-01	k: 3707	n:20000
Cons ci ratio: 8.640790e-02	ci left: 8.925437e-02	ci right 9.736432e-02	k: 1865	n:20000
KS ci ratio: 1.497380e-02	ci left: 7.682399e-01	ci right 7.798803e-01	k: 15482	n:20000
OR5B12   20000 perm   3 sec   (5889 perm/sec)   p_kst 7.741000e-01   p_cons 9.325000e-02   p_joint 1.853500e-01

Outputting figure to mutsig2_images.part000000000122/OR5B12.2_949_20000_0.7741_0.09325_0.18535.png
                gene_name: OR5B12
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000122
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 122 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1700>
Subject: Job 9877778: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1700>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000123> was used as the working directory.
Started at Fri Oct  5 22:50:12 2012
Results reported at Fri Oct  5 23:05:13 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000123.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000123.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 123  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000123.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    932.91 sec.
    Max Memory :      2195 MB
    Max Swap   :      4685 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
123
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 123
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 123: processing genes 11063 - 11152
Calculating significance of each gene.
Using projection method.
11063	OR5D16	5.456187e-02
11064	OR5D18	4.224691e-02
11065	OR5F1	1
11066	OR5H1	1
11067	OR5H14	3.057829e-03
11068	OR5H15	1
11069	OR5H2	1
11070	OR5H6	1
11071	OR5I1	7.694960e-02
11072	OR5J2	1
11073	OR5K1	6.979807e-02
11074	OR5K2	1
11075	OR5K3	1
11076	OR5K4	1
11077	OR5L1	1
11078	OR5L2	1.330537e-04
11079	OR5M1	1
11080	OR5M10	1
11081	OR5M11	1
11082	OR5M3	1
11083	OR5M8	1
11084	OR5M9	1
11085	OR5P2	1.051349e-01
11086	OR5P3	1
11087	OR5R1	5.032177e-03
11088	OR5T1	8.760104e-02
11089	OR5T2	1
11090	OR5T3	1
11091	OR5V1	1
11092	OR5W2	1.389627e-02
11093	OR6A2	1
11094	OR6B1	1
11095	OR6B2	1
11096	OR6B3	1
11097	OR6C1	1
11098	OR6C2	1
11099	OR6C3	1
11100	OR6C4	1
11101	OR6C6	1
11102	OR6C65	1
11103	OR6C68	1
11104	OR6C70	1
11105	OR6C74	1
11106	OR6C75	1
11107	OR6C76	1
11108	OR6F1	1
11109	OR6K2	1
11110	OR6K3	1
11111	OR6K6	9.052772e-02
11112	OR6M1	1
11113	OR6N1	1.389716e-05
11114	OR6N2	1
11115	OR6Q1	1
11116	OR6S1	1
11117	OR6T1	1
11118	OR6V1	1
11119	OR6X1	8.679514e-02
11120	OR6Y1	5.467149e-03
11121	OR7A10	1
11122	OR7A17	5.882405e-03
In gene OR7A5 the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 964     n = 1	mu =   6.75e-07
11123	OR7A5	3.960433e-03
11124	OR7C1	1
11125	OR7C2	1
11126	OR7D2	1
11127	OR7D4	1
11128	OR7E24	1
11129	OR7G1	1
11130	OR7G2	1
11131	OR7G3	1
11132	OR8A1	1
11133	OR8B12	1
11134	OR8B2	1
11135	OR8B3	1
11136	OR8B4	1
11137	OR8B8	1
11138	OR8D1	1
11139	OR8D2	7.028744e-02
11140	OR8D4	1
11141	OR8G1	1
11142	OR8G2	1
11143	OR8G5	1
11144	OR8H1	1
11145	OR8H2	1
11146	OR8H3	1
11147	OR8I2	1
11148	OR8J1	1.813904e-02
11149	OR8J3	1
11150	OR8K1	1
11151	OR8K3	1
11152	OR8K5	1
Done

Running MutSig 2:
Scatter job 123: processing genes 11063 - 11152
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
OR5L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.689887e-02	ci left: 4.015330e-01	ci right 4.209187e-01	k: 4112	n:10000
Cons ci ratio: 8.689119e-02	ci left: 1.617022e-01	ci right 1.764911e-01	k: 1690	n:10000
KS ci ratio: 2.609546e-02	ci left: 6.837536e-01	ci right 7.019339e-01	k: 6929	n:10000
OR5L2   10000 perm   2 sec   (6499 perm/sec)   p_kst 6.929000e-01   p_cons 1.690000e-01   p_joint 4.112000e-01

Outputting figure to mutsig2_images.part000000000123/OR5L2.3_940_10000_0.6929_0.169_0.4112.png
                gene_name: OR5L2
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 17 percent done.
OR6N1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.467632e-02	ci left: 4.251537e-01	ci right 4.446842e-01	k: 4349	n:10000
Cons ci ratio: 3.957213e-02	ci left: 4.853532e-01	ci right 5.050496e-01	k: 4952	n:10000
KS ci ratio: 5.275826e-02	ci left: 3.462109e-01	ci right 3.650732e-01	k: 3556	n:10000
OR6N1   10000 perm   2 sec   (6326 perm/sec)   p_kst 3.556000e-01   p_cons 4.952000e-01   p_joint 4.349000e-01

Outputting figure to mutsig2_images.part000000000123/OR6N1.3_942_10000_0.3556_0.4952_0.4349.png
                gene_name: OR6N1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.44 

Current progress: 33 percent done.
OR5H14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.647618e-02	ci left: 6.775056e-01	ci right 6.957856e-01	k: 6867	n:10000
Cons ci ratio: 3.967515e-02	ci left: 4.840539e-01	ci right 5.037497e-01	k: 4939	n:10000
KS ci ratio: 1.657893e-02	ci left: 8.411177e-01	ci right 8.552788e-01	k: 8483	n:10000
OR5H14   10000 perm   2 sec   (6128 perm/sec)   p_kst 8.483000e-01   p_cons 4.939000e-01   p_joint 6.867000e-01

Outputting figure to mutsig2_images.part000000000123/OR5H14.2_937_10000_0.8483_0.4939_0.6867.png
                gene_name: OR5H14
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 50 percent done.
OR5R1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.197400e-02	ci left: 7.524148e-01	ci right 7.692330e-01	k: 7609	n:10000
KS ci ratio: 2.152427e-01	ci left: 2.863733e-02	ci right 3.563870e-02	k: 320	n:10000
OR5R1   10000 perm   2 sec   (6505 perm/sec)   p_kst 3.200000e-02   p_cons 7.609000e-01   p_joint 1

Joint ci ratio: 3.123952e-02	ci left: 4.335539e-01	ci right 4.473634e-01	k: 8809	n:20000
Cons ci ratio: 1.545262e-02	ci left: 7.569427e-01	ci right 7.687808e-01	k: 15258	n:20000
KS ci ratio: 1.598212e-01	ci left: 2.686219e-02	ci right 3.157601e-02	k: 583	n:20000
OR5R1   20000 perm   3 sec   (5736 perm/sec)   p_kst 2.915000e-02   p_cons 7.629000e-01   p_joint 4.404500e-01

Joint ci ratio: 1.914527e-02	ci left: 5.772625e-01	ci right 5.884548e-01	k: 17486	n:30000
Cons ci ratio: 1.259842e-02	ci left: 7.585823e-01	ci right 7.682333e-01	k: 22903	n:30000
KS ci ratio: 1.312683e-01	ci left: 2.696883e-02	ci right 3.078980e-02	k: 865	n:30000
OR5R1   30000 perm   6 sec   (5447 perm/sec)   p_kst 2.883333e-02   p_cons 7.634333e-01   p_joint 5.828667e-01

Joint ci ratio: 2.093525e-02	ci left: 4.621758e-01	ci right 4.719790e-01	k: 18683	n:40000
Cons ci ratio: 1.089872e-02	ci left: 7.596311e-01	ci right 7.679805e-01	k: 30553	n:40000
KS ci ratio: 1.140727e-01	ci left: 2.703697e-02	ci right 3.033192e-02	k: 1146	n:40000
OR5R1   40000 perm   8 sec   (5248 perm/sec)   p_kst 2.865000e-02   p_cons 7.638250e-01   p_joint 4.670750e-01

Joint ci ratio: 1.676175e-02	ci left: 5.180106e-01	ci right 5.267868e-01	k: 26120	n:50000
Cons ci ratio: 9.818483e-03	ci left: 7.574579e-01	ci right 7.649517e-01	k: 38061	n:50000
KS ci ratio: 1.021676e-01	ci left: 2.713693e-02	ci right 3.007814e-02	k: 1429	n:50000
OR5R1   50000 perm   10 sec   (5053 perm/sec)   p_kst 2.858000e-02   p_cons 7.612200e-01   p_joint 5.224000e-01

Joint ci ratio: 1.736140e-02	ci left: 4.553562e-01	ci right 4.633477e-01	k: 27561	n:60000
Cons ci ratio: 8.956928e-03	ci left: 7.580356e-01	ci right 7.648724e-01	k: 45688	n:60000
KS ci ratio: 9.326594e-02	ci left: 2.726453e-02	ci right 2.994799e-02	k: 1715	n:60000
OR5R1   60000 perm   12 sec   (4933 perm/sec)   p_kst 2.858333e-02   p_cons 7.614667e-01   p_joint 4.593500e-01

Outputting figure to mutsig2_images.part000000000123/OR5R1.2_977_60000_0.028583_0.76147_0.45935.png
                gene_name: OR5R1
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.46 

Current progress: 67 percent done.
OR6Y1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.023926e-01	ci left: 7.512676e-03	ci right 1.138119e-02	k: 93	n:10000
Cons ci ratio: 6.531663e-02	ci left: 2.560727e-01	ci right 2.734646e-01	k: 2647	n:10000
KS ci ratio: 8.347854e-01	ci left: 1.300388e-03	ci right 3.208291e-03	k: 21	n:10000
OR6Y1   10000 perm   1 sec   (6803 perm/sec)   p_kst 2.100000e-03   p_cons 2.647000e-01   p_joint 9.300000e-03

Joint ci ratio: 3.426791e-01	ci left: 5.387780e-03	ci right 7.659273e-03	k: 129	n:20000
Cons ci ratio: 4.603834e-02	ci left: 2.598855e-01	ci right 2.721825e-01	k: 5320	n:20000
KS ci ratio: 7.034894e-01	ci left: 1.012265e-03	ci right 2.140657e-03	k: 30	n:20000
OR6Y1   20000 perm   3 sec   (5982 perm/sec)   p_kst 1.500000e-03   p_cons 2.660000e-01   p_joint 6.450000e-03

Joint ci ratio: 2.255632e-01	ci left: 8.842131e-03	ci right 1.112094e-02	k: 298	n:30000
Cons ci ratio: 3.772061e-02	ci left: 2.596809e-01	ci right 2.696980e-01	k: 7940	n:30000
KS ci ratio: 5.905189e-01	ci left: 1.037499e-03	ci right 1.930210e-03	k: 43	n:30000
OR6Y1   30000 perm   5 sec   (5641 perm/sec)   p_kst 1.433333e-03   p_cons 2.646667e-01   p_joint 9.933333e-03

Joint ci ratio: 2.228633e-01	ci left: 6.819546e-03	ci right 8.553075e-03	k: 306	n:40000
Cons ci ratio: 3.265237e-02	ci left: 2.605305e-01	ci right 2.692037e-01	k: 10594	n:40000
KS ci ratio: 5.234587e-01	ci left: 1.036001e-03	ci right 1.789380e-03	k: 55	n:40000
OR6Y1   40000 perm   7 sec   (5382 perm/sec)   p_kst 1.375000e-03   p_cons 2.648500e-01   p_joint 7.650000e-03

Joint ci ratio: 3.651176e-01	ci left: 1.881076e-03	ci right 2.738348e-03	k: 114	n:50000
Cons ci ratio: 2.921681e-02	ci left: 2.608368e-01	ci right 2.685906e-01	k: 13235	n:50000
KS ci ratio: 4.785785e-01	ci left: 1.021030e-03	ci right 1.679062e-03	k: 66	n:50000
OR6Y1   50000 perm   10 sec   (5217 perm/sec)   p_kst 1.320000e-03   p_cons 2.647000e-01   p_joint 2.280000e-03

Joint ci ratio: 4.018617e-01	ci left: 1.266206e-03	ci right 1.916867e-03	k: 94	n:60000
Cons ci ratio: 2.666343e-02	ci left: 2.612892e-01	ci right 2.683669e-01	k: 15889	n:60000
KS ci ratio: 4.435603e-01	ci left: 1.012915e-03	ci right 1.603689e-03	k: 77	n:60000
OR6Y1   60000 perm   12 sec   (4946 perm/sec)   p_kst 1.283333e-03   p_cons 2.648167e-01   p_joint 1.566667e-03

Joint ci ratio: 3.717722e-01	ci left: 1.291695e-03	ci right 1.893691e-03	k: 110	n:70000
Cons ci ratio: 2.464787e-02	ci left: 2.621459e-01	ci right 2.687021e-01	k: 18579	n:70000
KS ci ratio: 4.040427e-01	ci left: 1.072458e-03	ci right 1.627346e-03	k: 93	n:70000
OR6Y1   70000 perm   14 sec   (4851 perm/sec)   p_kst 1.328571e-03   p_cons 2.654143e-01   p_joint 1.571429e-03

Joint ci ratio: 4.019421e-01	ci left: 9.496208e-04	ci right 1.437713e-03	k: 94	n:80000
Cons ci ratio: 2.308060e-02	ci left: 2.619441e-01	ci right 2.680730e-01	k: 21200	n:80000
KS ci ratio: 3.822993e-01	ci left: 1.062314e-03	ci right 1.574951e-03	k: 104	n:80000
OR6Y1   80000 perm   17 sec   (4756 perm/sec)   p_kst 1.300000e-03   p_cons 2.650000e-01   p_joint 1.175000e-03

Joint ci ratio: 2.657845e-01	ci left: 2.090902e-03	ci right 2.741833e-03	k: 216	n:90000
Cons ci ratio: 2.107576e-02	ci left: 2.747203e-01	ci right 2.805829e-01	k: 24988	n:90000
KS ci ratio: 3.591062e-01	ci left: 1.085358e-03	ci right 1.569925e-03	k: 118	n:90000
OR6Y1   90000 perm   19 sec   (4668 perm/sec)   p_kst 1.311111e-03   p_cons 2.776444e-01   p_joint 2.400000e-03

Joint ci ratio: 2.532593e-01	ci left: 2.087507e-03	ci right 2.701925e-03	k: 238	n:100000
Cons ci ratio: 2.000398e-02	ci left: 2.746764e-01	ci right 2.802365e-01	k: 27745	n:100000
KS ci ratio: 3.334606e-01	ci left: 1.150326e-03	ci right 1.619362e-03	k: 137	n:100000
OR6Y1   100000 perm   22 sec   (4585 perm/sec)   p_kst 1.370000e-03   p_cons 2.774500e-01   p_joint 2.380000e-03

Joint ci ratio: 2.476396e-01	ci left: 1.991445e-03	ci right 2.562578e-03	k: 249	n:110000
Cons ci ratio: 1.911317e-02	ci left: 2.739670e-01	ci right 2.792630e-01	k: 30427	n:110000
KS ci ratio: 3.209199e-01	ci left: 1.137539e-03	ci right 1.580333e-03	k: 148	n:110000
OR6Y1   110000 perm   24 sec   (4508 perm/sec)   p_kst 1.345455e-03   p_cons 2.766091e-01   p_joint 2.263636e-03

Joint ci ratio: 2.315171e-01	ci left: 2.107516e-03	ci right 2.666966e-03	k: 285	n:120000
Cons ci ratio: 1.830907e-02	ci left: 2.738709e-01	ci right 2.789399e-01	k: 33168	n:120000
KS ci ratio: 3.031263e-01	ci left: 1.181012e-03	ci right 1.610332e-03	k: 166	n:120000
OR6Y1   120000 perm   27 sec   (4428 perm/sec)   p_kst 1.383333e-03   p_cons 2.764000e-01   p_joint 2.375000e-03

Joint ci ratio: 2.202482e-01	ci left: 2.163125e-03	ci right 2.705604e-03	k: 315	n:130000
Cons ci ratio: 1.760097e-02	ci left: 2.737400e-01	ci right 2.786085e-01	k: 35902	n:130000
KS ci ratio: 2.872215e-01	ci left: 1.225509e-03	ci right 1.643392e-03	k: 185	n:130000
OR6Y1   130000 perm   30 sec   (4352 perm/sec)   p_kst 1.423077e-03   p_cons 2.761692e-01   p_joint 2.423077e-03

Joint ci ratio: 2.142361e-01	ci left: 2.130189e-03	ci right 2.647908e-03	k: 333	n:140000
Cons ci ratio: 1.695519e-02	ci left: 2.739587e-01	ci right 2.786505e-01	k: 38682	n:140000
KS ci ratio: 2.716001e-01	ci left: 1.284119e-03	ci right 1.694117e-03	k: 207	n:140000
OR6Y1   140000 perm   33 sec   (4280 perm/sec)   p_kst 1.478571e-03   p_cons 2.763000e-01   p_joint 2.378571e-03

Joint ci ratio: 2.080990e-01	ci left: 2.114457e-03	ci right 2.611757e-03	k: 353	n:150000
Cons ci ratio: 1.639505e-02	ci left: 2.736790e-01	ci right 2.782097e-01	k: 41391	n:150000
KS ci ratio: 2.646947e-01	ci left: 1.266914e-03	ci right 1.659429e-03	k: 218	n:150000
OR6Y1   150000 perm   36 sec   (4208 perm/sec)   p_kst 1.453333e-03   p_cons 2.759400e-01   p_joint 2.353333e-03

Joint ci ratio: 2.011176e-01	ci left: 2.130552e-03	ci right 2.612763e-03	k: 378	n:160000
Cons ci ratio: 1.588002e-02	ci left: 2.736111e-01	ci right 2.779970e-01	k: 44128	n:160000
KS ci ratio: 2.571732e-01	ci left: 1.263668e-03	ci right 1.642267e-03	k: 231	n:160000
OR6Y1   160000 perm   39 sec   (4140 perm/sec)   p_kst 1.443750e-03   p_cons 2.758000e-01   p_joint 2.362500e-03

Joint ci ratio: 1.908118e-01	ci left: 2.240182e-03	ci right 2.718214e-03	k: 420	n:170000
Cons ci ratio: 1.542020e-02	ci left: 2.733067e-01	ci right 2.775598e-01	k: 46823	n:170000
KS ci ratio: 2.523296e-01	ci left: 1.238894e-03	ci right 1.601981e-03	k: 240	n:170000
OR6Y1   170000 perm   42 sec   (4073 perm/sec)   p_kst 1.411765e-03   p_cons 2.754294e-01   p_joint 2.470588e-03

Joint ci ratio: 1.872907e-01	ci left: 2.200405e-03	ci right 2.660299e-03	k: 436	n:180000
Cons ci ratio: 1.498665e-02	ci left: 2.733427e-01	ci right 2.774756e-01	k: 49573	n:180000
KS ci ratio: 2.457884e-01	ci left: 1.237781e-03	ci right 1.589702e-03	k: 253	n:180000
OR6Y1   180000 perm   45 sec   (4007 perm/sec)   p_kst 1.405556e-03   p_cons 2.754056e-01   p_joint 2.422222e-03

Joint ci ratio: 1.821526e-01	ci left: 2.210090e-03	ci right 2.657938e-03	k: 461	n:190000
Cons ci ratio: 1.458119e-02	ci left: 2.735550e-01	ci right 2.775782e-01	k: 52357	n:190000
KS ci ratio: 2.392825e-01	ci left: 1.241842e-03	ci right 1.584187e-03	k: 267	n:190000
OR6Y1   190000 perm   48 sec   (3947 perm/sec)   p_kst 1.405263e-03   p_cons 2.755632e-01   p_joint 2.426316e-03

Joint ci ratio: 1.756170e-01	ci left: 2.266758e-03	ci right 2.707860e-03	k: 496	n:200000
Cons ci ratio: 1.422689e-02	ci left: 2.731886e-01	ci right 2.771080e-01	k: 55029	n:200000
KS ci ratio: 2.366530e-01	ci left: 1.207959e-03	ci right 1.536766e-03	k: 273	n:200000
OR6Y1   200000 perm   51 sec   (3888 perm/sec)   p_kst 1.365000e-03   p_cons 2.751450e-01   p_joint 2.480000e-03

Joint ci ratio: 1.725235e-01	ci left: 2.240794e-03	ci right 2.668363e-03	k: 514	n:210000
Cons ci ratio: 1.388295e-02	ci left: 2.732668e-01	ci right 2.770918e-01	k: 57787	n:210000
KS ci ratio: 2.304290e-01	ci left: 1.217688e-03	ci right 1.539186e-03	k: 288	n:210000
OR6Y1   210000 perm   55 sec   (3829 perm/sec)   p_kst 1.371429e-03   p_cons 2.751762e-01   p_joint 2.447619e-03

Joint ci ratio: 1.718654e-01	ci left: 2.156330e-03	ci right 2.566049e-03	k: 518	n:220000
Cons ci ratio: 1.357131e-02	ci left: 2.730895e-01	ci right 2.768255e-01	k: 60490	n:220000
KS ci ratio: 2.261664e-01	ci left: 1.209478e-03	ci right 1.522078e-03	k: 299	n:220000
OR6Y1   220000 perm   58 sec   (3770 perm/sec)   p_kst 1.359091e-03   p_cons 2.749545e-01   p_joint 2.354545e-03

Joint ci ratio: 1.666456e-01	ci left: 2.199982e-03	ci right 2.604026e-03	k: 551	n:230000
Cons ci ratio: 1.327106e-02	ci left: 2.731889e-01	ci right 2.768429e-01	k: 63253	n:230000
KS ci ratio: 2.203652e-01	ci left: 1.222569e-03	ci right 1.529349e-03	k: 315	n:230000
OR6Y1   230000 perm   62 sec   (3712 perm/sec)   p_kst 1.369565e-03   p_cons 2.750130e-01   p_joint 2.395652e-03

Joint ci ratio: 1.632790e-01	ci left: 2.200193e-03	ci right 2.595311e-03	k: 574	n:240000
Cons ci ratio: 1.298203e-02	ci left: 2.735220e-01	ci right 2.771001e-01	k: 66074	n:240000
KS ci ratio: 2.156400e-01	ci left: 1.226777e-03	ci right 1.527139e-03	k: 329	n:240000
OR6Y1   240000 perm   66 sec   (3657 perm/sec)   p_kst 1.370833e-03   p_cons 2.753083e-01   p_joint 2.391667e-03

Joint ci ratio: 1.606480e-01	ci left: 2.185104e-03	ci right 2.570578e-03	k: 593	n:250000
Cons ci ratio: 1.272358e-02	ci left: 2.734379e-01	ci right 2.769433e-01	k: 68797	n:250000
KS ci ratio: 2.127604e-01	ci left: 1.211774e-03	ci right 1.503983e-03	k: 338	n:250000
OR6Y1   250000 perm   69 sec   (3603 perm/sec)   p_kst 1.352000e-03   p_cons 2.751880e-01   p_joint 2.372000e-03

Joint ci ratio: 1.586600e-01	ci left: 2.156446e-03	ci right 2.531708e-03	k: 608	n:260000
Cons ci ratio: 1.246880e-02	ci left: 2.737180e-01	ci right 2.771562e-01	k: 71613	n:260000
KS ci ratio: 2.093913e-01	ci left: 1.205238e-03	ci right 1.490679e-03	k: 349	n:260000
OR6Y1   260000 perm   74 sec   (3537 perm/sec)   p_kst 1.342308e-03   p_cons 2.754346e-01   p_joint 2.338462e-03

Joint ci ratio: 1.569962e-01	ci left: 2.122821e-03	ci right 2.487994e-03	k: 621	n:270000
Cons ci ratio: 1.224621e-02	ci left: 2.734088e-01	ci right 2.767813e-01	k: 74275	n:270000
KS ci ratio: 2.058921e-01	ci left: 1.202733e-03	ci right 1.482221e-03	k: 361	n:270000
OR6Y1   270000 perm   77 sec   (3486 perm/sec)   p_kst 1.337037e-03   p_cons 2.750926e-01   p_joint 2.300000e-03

Joint ci ratio: 1.546531e-01	ci left: 2.112216e-03	ci right 2.469639e-03	k: 640	n:280000
Cons ci ratio: 1.202285e-02	ci left: 2.735285e-01	ci right 2.768405e-01	k: 77051	n:280000
KS ci ratio: 2.020224e-01	ci left: 1.207225e-03	ci right 1.481834e-03	k: 375	n:280000
OR6Y1   280000 perm   81 sec   (3440 perm/sec)   p_kst 1.339286e-03   p_cons 2.751821e-01   p_joint 2.285714e-03

Joint ci ratio: 1.509292e-01	ci left: 2.145511e-03	ci right 2.499035e-03	k: 672	n:290000
Cons ci ratio: 1.180750e-02	ci left: 2.737678e-01	ci right 2.770229e-01	k: 79864	n:290000
KS ci ratio: 1.991315e-01	ci left: 1.201622e-03	ci right 1.470571e-03	k: 386	n:290000
OR6Y1   290000 perm   85 sec   (3395 perm/sec)   p_kst 1.331034e-03   p_cons 2.753931e-01   p_joint 2.317241e-03

Joint ci ratio: 1.487362e-01	ci left: 2.138160e-03	ci right 2.484899e-03	k: 692	n:300000
Cons ci ratio: 1.161059e-02	ci left: 2.737421e-01	ci right 2.769422e-01	k: 82602	n:300000
KS ci ratio: 1.958690e-01	ci left: 1.202759e-03	ci right 1.467025e-03	k: 399	n:300000
OR6Y1   300000 perm   90 sec   (3350 perm/sec)   p_kst 1.330000e-03   p_cons 2.753400e-01   p_joint 2.306667e-03

Joint ci ratio: 1.463278e-01	ci left: 2.140642e-03	ci right 2.481672e-03	k: 715	n:310000
Cons ci ratio: 1.142044e-02	ci left: 2.738151e-01	ci right 2.769633e-01	k: 85370	n:310000
KS ci ratio: 1.929959e-01	ci left: 1.200786e-03	ci right 1.460293e-03	k: 411	n:310000
OR6Y1   310000 perm   94 sec   (3308 perm/sec)   p_kst 1.325806e-03   p_cons 2.753871e-01   p_joint 2.306452e-03

Joint ci ratio: 1.442285e-01	ci left: 2.136986e-03	ci right 2.472128e-03	k: 736	n:320000
Cons ci ratio: 1.124022e-02	ci left: 2.738527e-01	ci right 2.769514e-01	k: 88128	n:320000
KS ci ratio: 1.902456e-01	ci left: 1.198962e-03	ci right 1.453956e-03	k: 423	n:320000
OR6Y1   320000 perm   98 sec   (3265 perm/sec)   p_kst 1.321875e-03   p_cons 2.754000e-01   p_joint 2.300000e-03

Joint ci ratio: 1.421230e-01	ci left: 2.136508e-03	ci right 2.466269e-03	k: 758	n:330000
Cons ci ratio: 1.106432e-02	ci left: 2.740306e-01	ci right 2.770824e-01	k: 90933	n:330000
KS ci ratio: 1.873945e-01	ci left: 1.200162e-03	ci right 1.451151e-03	k: 436	n:330000
OR6Y1   330000 perm   102 sec   (3224 perm/sec)   p_kst 1.321212e-03   p_cons 2.755545e-01   p_joint 2.296970e-03

Joint ci ratio: 1.403777e-01	ci left: 2.127576e-03	ci right 2.451588e-03	k: 777	n:340000
Cons ci ratio: 1.089707e-02	ci left: 2.741749e-01	ci right 2.771819e-01	k: 93730	n:340000
KS ci ratio: 1.840547e-01	ci left: 1.209734e-03	ci right 1.457713e-03	k: 452	n:340000
OR6Y1   340000 perm   107 sec   (3181 perm/sec)   p_kst 1.329412e-03   p_cons 2.756765e-01   p_joint 2.285294e-03

Joint ci ratio: 1.386951e-01	ci left: 2.119178e-03	ci right 2.437724e-03	k: 796	n:350000
Cons ci ratio: 1.074425e-02	ci left: 2.740488e-01	ci right 2.770120e-01	k: 96435	n:350000
KS ci ratio: 1.812747e-01	ci left: 1.213342e-03	ci right 1.457891e-03	k: 466	n:350000
OR6Y1   350000 perm   111 sec   (3140 perm/sec)   p_kst 1.331429e-03   p_cons 2.755286e-01   p_joint 2.274286e-03

Joint ci ratio: 1.368198e-01	ci left: 2.119317e-03	ci right 2.433225e-03	k: 818	n:360000
Cons ci ratio: 1.059319e-02	ci left: 2.740993e-01	ci right 2.770210e-01	k: 99201	n:360000
KS ci ratio: 1.784313e-01	ci left: 1.219429e-03	ci right 1.460934e-03	k: 481	n:360000
OR6Y1   360000 perm   116 sec   (3104 perm/sec)   p_kst 1.336111e-03   p_cons 2.755583e-01   p_joint 2.272222e-03

Joint ci ratio: 1.356668e-01	ci left: 2.098585e-03	ci right 2.406591e-03	k: 832	n:370000
Cons ci ratio: 1.045115e-02	ci left: 2.740393e-01	ci right 2.769210e-01	k: 101927	n:370000
KS ci ratio: 1.757177e-01	ci left: 1.225216e-03	ci right 1.463785e-03	k: 496	n:370000
OR6Y1   370000 perm   121 sec   (3065 perm/sec)   p_kst 1.340541e-03   p_cons 2.754784e-01   p_joint 2.248649e-03

Joint ci ratio: 1.339101e-01	ci left: 2.099301e-03	ci right 2.403105e-03	k: 854	n:380000
Cons ci ratio: 1.031005e-02	ci left: 2.741614e-01	ci right 2.770052e-01	k: 104721	n:380000
KS ci ratio: 1.736343e-01	ci left: 1.223171e-03	ci right 1.458222e-03	k: 508	n:380000
OR6Y1   380000 perm   125 sec   (3029 perm/sec)   p_kst 1.336842e-03   p_cons 2.755816e-01   p_joint 2.247368e-03

Joint ci ratio: 1.316196e-01	ci left: 2.119843e-03	ci right 2.420962e-03	k: 884	n:390000
Cons ci ratio: 1.017648e-02	ci left: 2.742006e-01	ci right 2.770078e-01	k: 107485	n:390000
KS ci ratio: 1.704804e-01	ci left: 1.238429e-03	ci right 1.471645e-03	k: 527	n:390000
OR6Y1   390000 perm   130 sec   (2993 perm/sec)   p_kst 1.351282e-03   p_cons 2.756026e-01   p_joint 2.266667e-03

Joint ci ratio: 1.297273e-01	ci left: 2.129723e-03	ci right 2.427561e-03	k: 910	n:400000
Cons ci ratio: 1.004891e-02	ci left: 2.742007e-01	ci right 2.769725e-01	k: 110234	n:400000
KS ci ratio: 1.682641e-01	ci left: 1.240985e-03	ci right 1.471336e-03	k: 541	n:400000
OR6Y1   400000 perm   135 sec   (2957 perm/sec)   p_kst 1.352500e-03   p_cons 2.755850e-01   p_joint 2.275000e-03

Joint ci ratio: 1.283267e-01	ci left: 2.124984e-03	ci right 2.418707e-03	k: 930	n:410000
Cons ci ratio: 9.924208e-03	ci left: 2.742741e-01	ci right 2.770120e-01	k: 113013	n:410000
KS ci ratio: 1.670370e-01	ci left: 1.229410e-03	ci right 1.455781e-03	k: 549	n:410000
OR6Y1   410000 perm   140 sec   (2922 perm/sec)   p_kst 1.339024e-03   p_cons 2.756415e-01   p_joint 2.268293e-03

Joint ci ratio: 1.267703e-01	ci left: 2.127404e-03	ci right 2.417627e-03	k: 953	n:420000
Cons ci ratio: 9.802864e-03	ci left: 2.743917e-01	ci right 2.770971e-01	k: 115812	n:420000
KS ci ratio: 1.655396e-01	ci left: 1.222956e-03	ci right 1.445919e-03	k: 559	n:420000
OR6Y1   420000 perm   146 sec   (2882 perm/sec)   p_kst 1.330952e-03   p_cons 2.757429e-01   p_joint 2.269048e-03

Joint ci ratio: 1.258515e-01	ci left: 2.109457e-03	ci right 2.394991e-03	k: 967	n:430000
Cons ci ratio: 9.687894e-03	ci left: 2.744204e-01	ci right 2.770942e-01	k: 118575	n:430000
KS ci ratio: 1.642260e-01	ci left: 1.214582e-03	ci right 1.434087e-03	k: 568	n:430000
OR6Y1   430000 perm   151 sec   (2850 perm/sec)   p_kst 1.320930e-03   p_cons 2.757558e-01   p_joint 2.248837e-03

Joint ci ratio: 1.242568e-01	ci left: 2.116556e-03	ci right 2.399153e-03	k: 992	n:440000
Cons ci ratio: 9.576004e-03	ci left: 2.744844e-01	ci right 2.771277e-01	k: 121354	n:440000
KS ci ratio: 1.619641e-01	ci left: 1.221857e-03	ci right 1.439340e-03	k: 584	n:440000
OR6Y1   440000 perm   156 sec   (2818 perm/sec)   p_kst 1.327273e-03   p_cons 2.758045e-01   p_joint 2.254545e-03

Joint ci ratio: 1.230245e-01	ci left: 2.112591e-03	ci right 2.391657e-03	k: 1012	n:450000
Cons ci ratio: 9.467588e-03	ci left: 2.745589e-01	ci right 2.771729e-01	k: 124139	n:450000
KS ci ratio: 1.603283e-01	ci left: 1.220296e-03	ci right 1.435096e-03	k: 596	n:450000
OR6Y1   450000 perm   161 sec   (2787 perm/sec)   p_kst 1.324444e-03   p_cons 2.758644e-01   p_joint 2.248889e-03

Joint ci ratio: 1.214750e-01	ci left: 2.121459e-03	ci right 2.397913e-03	k: 1038	n:460000
Cons ci ratio: 9.366492e-03	ci left: 2.744719e-01	ci right 2.770570e-01	k: 126851	n:460000
KS ci ratio: 1.580925e-01	ci left: 1.229253e-03	ci right 1.442325e-03	k: 613	n:460000
OR6Y1   460000 perm   167 sec   (2756 perm/sec)   p_kst 1.332609e-03   p_cons 2.757630e-01   p_joint 2.256522e-03

Joint ci ratio: 1.207233e-01	ci left: 2.103142e-03	ci right 2.375393e-03	k: 1051	n:470000
Cons ci ratio: 9.269061e-03	ci left: 2.743675e-01	ci right 2.769246e-01	k: 129553	n:470000
KS ci ratio: 1.568212e-01	ci left: 1.223536e-03	ci right 1.433752e-03	k: 623	n:470000
OR6Y1   470000 perm   172 sec   (2726 perm/sec)   p_kst 1.325532e-03   p_cons 2.756447e-01   p_joint 2.236170e-03

Joint ci ratio: 1.190370e-01	ci left: 2.119954e-03	ci right 2.390277e-03	k: 1081	n:480000
Cons ci ratio: 9.173506e-03	ci left: 2.743155e-01	ci right 2.768456e-01	k: 132278	n:480000
KS ci ratio: 1.554574e-01	ci left: 1.220067e-03	ci right 1.427694e-03	k: 634	n:480000
OR6Y1   480000 perm   178 sec   (2696 perm/sec)   p_kst 1.320833e-03   p_cons 2.755792e-01   p_joint 2.252083e-03

Joint ci ratio: 1.172610e-01	ci left: 2.142047e-03	ci right 2.410831e-03	k: 1114	n:490000
Cons ci ratio: 9.078062e-03	ci left: 2.743880e-01	ci right 2.768922e-01	k: 135063	n:490000
KS ci ratio: 1.535347e-01	ci left: 1.226559e-03	ci right 1.432471e-03	k: 650	n:490000
OR6Y1   490000 perm   184 sec   (2667 perm/sec)   p_kst 1.326531e-03   p_cons 2.756388e-01   p_joint 2.273469e-03

Joint ci ratio: 1.158152e-01	ci left: 2.153575e-03	ci right 2.420245e-03	k: 1142	n:500000
Cons ci ratio: 8.986526e-03	ci left: 2.744137e-01	ci right 2.768929e-01	k: 137826	n:500000
KS ci ratio: 1.517956e-01	ci left: 1.230882e-03	ci right 1.434967e-03	k: 665	n:500000
OR6Y1   500000 perm   189 sec   (2639 perm/sec)   p_kst 1.330000e-03   p_cons 2.756520e-01   p_joint 2.284000e-03

Joint ci ratio: 1.149641e-01	ci left: 2.143718e-03	ci right 2.407085e-03	k: 1159	n:510000
Cons ci ratio: 8.898404e-03	ci left: 2.744073e-01	ci right 2.768619e-01	k: 140573	n:510000
KS ci ratio: 1.503355e-01	ci left: 1.231274e-03	ci right 1.433283e-03	k: 678	n:510000
OR6Y1   510000 perm   195 sec   (2612 perm/sec)   p_kst 1.329412e-03   p_cons 2.756333e-01   p_joint 2.272549e-03

Joint ci ratio: 1.136006e-01	ci left: 2.154801e-03	ci right 2.416179e-03	k: 1187	n:520000
Cons ci ratio: 8.814861e-03	ci left: 2.743090e-01	ci right 2.767396e-01	k: 143272	n:520000
KS ci ratio: 1.487017e-01	ci left: 1.235362e-03	ci right 1.435644e-03	k: 693	n:520000
OR6Y1   520000 perm   202 sec   (2579 perm/sec)   p_kst 1.332692e-03   p_cons 2.755231e-01   p_joint 2.282692e-03

Joint ci ratio: 1.120999e-01	ci left: 2.172818e-03	ci right 2.432670e-03	k: 1219	n:530000
Cons ci ratio: 8.730326e-03	ci left: 2.743653e-01	ci right 2.767730e-01	k: 146051	n:530000
KS ci ratio: 1.465006e-01	ci left: 1.250214e-03	ci right 1.449641e-03	k: 714	n:530000
OR6Y1   530000 perm   208 sec   (2547 perm/sec)   p_kst 1.347170e-03   p_cons 2.755679e-01   p_joint 2.300000e-03

Joint ci ratio: 1.107015e-01	ci left: 2.188390e-03	ci right 2.446626e-03	k: 1250	n:540000
Cons ci ratio: 8.647937e-03	ci left: 2.744307e-01	ci right 2.768161e-01	k: 148836	n:540000
KS ci ratio: 1.450870e-01	ci left: 1.252042e-03	ci right 1.449667e-03	k: 728	n:540000
OR6Y1   540000 perm   214 sec   (2521 perm/sec)   p_kst 1.348148e-03   p_cons 2.756222e-01   p_joint 2.314815e-03

Joint ci ratio: 1.096977e-01	ci left: 2.189266e-03	ci right 2.445112e-03	k: 1273	n:550000
Cons ci ratio: 8.566979e-03	ci left: 2.745338e-01	ci right 2.768976e-01	k: 151643	n:550000
KS ci ratio: 1.443963e-01	ci left: 1.241543e-03	ci right 1.436497e-03	k: 735	n:550000
OR6Y1   550000 perm   220 sec   (2496 perm/sec)   p_kst 1.336364e-03   p_cons 2.757145e-01   p_joint 2.314545e-03

Joint ci ratio: 1.164435e-01	ci left: 1.902014e-03	ci right 2.138899e-03	k: 1130	n:560000
Cons ci ratio: 8.490415e-03	ci left: 2.745317e-01	ci right 2.768742e-01	k: 154393	n:560000
KS ci ratio: 1.425671e-01	ci left: 1.252084e-03	ci right 1.445991e-03	k: 754	n:560000
OR6Y1   560000 perm   227 sec   (2472 perm/sec)   p_kst 1.346429e-03   p_cons 2.757018e-01   p_joint 2.017857e-03

Joint ci ratio: 1.140458e-01	ci left: 1.950431e-03	ci right 2.188008e-03	k: 1178	n:570000
Cons ci ratio: 8.415129e-03	ci left: 2.745647e-01	ci right 2.768867e-01	k: 157163	n:570000
KS ci ratio: 1.408968e-01	ci left: 1.260577e-03	ci right 1.453320e-03	k: 772	n:570000
OR6Y1   570000 perm   233 sec   (2448 perm/sec)   p_kst 1.354386e-03   p_cons 2.757246e-01   p_joint 2.066667e-03

Joint ci ratio: 1.066041e-01	ci left: 2.201842e-03	ci right 2.451446e-03	k: 1348	n:580000
Cons ci ratio: 8.343540e-03	ci left: 2.745141e-01	ci right 2.768158e-01	k: 159885	n:580000
KS ci ratio: 1.395492e-01	ci left: 1.263798e-03	ci right 1.455032e-03	k: 787	n:580000
OR6Y1   580000 perm   239 sec   (2426 perm/sec)   p_kst 1.356897e-03   p_cons 2.756638e-01   p_joint 2.324138e-03

Joint ci ratio: 1.058229e-01	ci left: 2.197521e-03	ci right 2.444695e-03	k: 1368	n:590000
Cons ci ratio: 8.273782e-03	ci left: 2.744635e-01	ci right 2.767455e-01	k: 162606	n:590000
KS ci ratio: 1.384122e-01	ci left: 1.263645e-03	ci right 1.453170e-03	k: 800	n:590000
OR6Y1   590000 perm   246 sec   (2402 perm/sec)   p_kst 1.355932e-03   p_cons 2.756034e-01   p_joint 2.318644e-03

Joint ci ratio: 1.044572e-01	ci left: 2.219319e-03	ci right 2.465526e-03	k: 1404	n:600000
Cons ci ratio: 8.204169e-03	ci left: 2.744913e-01	ci right 2.767542e-01	k: 165373	n:600000
KS ci ratio: 1.369660e-01	ci left: 1.269942e-03	ci right 1.458258e-03	k: 817	n:600000
OR6Y1   600000 perm   252 sec   (2378 perm/sec)   p_kst 1.361667e-03   p_cons 2.756217e-01   p_joint 2.340000e-03

Joint ci ratio: 1.033229e-01	ci left: 2.232436e-03	ci right 2.477246e-03	k: 1435	n:610000
Cons ci ratio: 8.139993e-03	ci left: 2.743365e-01	ci right 2.765804e-01	k: 168029	n:610000
KS ci ratio: 1.363844e-01	ci left: 1.260206e-03	ci right 1.446221e-03	k: 824	n:610000
OR6Y1   610000 perm   259 sec   (2355 perm/sec)   p_kst 1.350820e-03   p_cons 2.754574e-01   p_joint 2.352459e-03

Joint ci ratio: 1.044612e-01	ci left: 2.147724e-03	ci right 2.385998e-03	k: 1404	n:620000
Cons ci ratio: 8.073807e-03	ci left: 2.743592e-01	ci right 2.765849e-01	k: 170792	n:620000
KS ci ratio: 1.356471e-01	ci left: 1.253902e-03	ci right 1.437905e-03	k: 833	n:620000
OR6Y1   620000 perm   266 sec   (2333 perm/sec)   p_kst 1.343548e-03   p_cons 2.754710e-01   p_joint 2.264516e-03

Joint ci ratio: 1.035438e-01	ci left: 2.152283e-03	ci right 2.388839e-03	k: 1429	n:630000
Cons ci ratio: 8.007140e-03	ci left: 2.744842e-01	ci right 2.766924e-01	k: 173620	n:630000
KS ci ratio: 1.349215e-01	ci left: 1.247801e-03	ci right 1.429850e-03	k: 842	n:630000
OR6Y1   630000 perm   273 sec   (2309 perm/sec)   p_kst 1.336508e-03   p_cons 2.755873e-01   p_joint 2.268254e-03

Joint ci ratio: 1.004263e-01	ci left: 2.255699e-03	ci right 2.495716e-03	k: 1519	n:640000
Cons ci ratio: 7.946542e-03	ci left: 2.743823e-01	ci right 2.765729e-01	k: 176305	n:640000
KS ci ratio: 1.339715e-01	ci left: 1.246423e-03	ci right 1.426889e-03	k: 854	n:640000
OR6Y1   640000 perm   280 sec   (2287 perm/sec)   p_kst 1.334375e-03   p_cons 2.754766e-01   p_joint 2.373438e-03

Joint ci ratio: 9.938498e-02	ci left: 2.268997e-03	ci right 2.507780e-03	k: 1551	n:650000
Cons ci ratio: 7.884685e-03	ci left: 2.744157e-01	ci right 2.765894e-01	k: 179076	n:650000
KS ci ratio: 1.325067e-01	ci left: 1.255504e-03	ci right 1.435141e-03	k: 873	n:650000
OR6Y1   650000 perm   287 sec   (2267 perm/sec)   p_kst 1.343077e-03   p_cons 2.755015e-01   p_joint 2.386154e-03

Joint ci ratio: 9.868812e-02	ci left: 2.267126e-03	ci right 2.503942e-03	k: 1573	n:660000
Cons ci ratio: 7.824963e-03	ci left: 2.744118e-01	ci right 2.765690e-01	k: 181823	n:660000
KS ci ratio: 1.315321e-01	ci left: 1.255528e-03	ci right 1.433744e-03	k: 886	n:660000
OR6Y1   660000 perm   294 sec   (2246 perm/sec)   p_kst 1.342424e-03   p_cons 2.754894e-01   p_joint 2.383333e-03

Joint ci ratio: 9.772989e-02	ci left: 2.278421e-03	ci right 2.513974e-03	k: 1604	n:670000
Cons ci ratio: 7.766810e-03	ci left: 2.743962e-01	ci right 2.765371e-01	k: 184562	n:670000
KS ci ratio: 1.305788e-01	ci left: 1.255556e-03	ci right 1.432383e-03	k: 899	n:670000
OR6Y1   670000 perm   301 sec   (2226 perm/sec)   p_kst 1.341791e-03   p_cons 2.754657e-01   p_joint 2.394030e-03

Joint ci ratio: 9.700729e-02	ci left: 2.279350e-03	ci right 2.513157e-03	k: 1628	n:680000
Cons ci ratio: 7.709566e-03	ci left: 2.744002e-01	ci right 2.765253e-01	k: 187314	n:680000
KS ci ratio: 1.300745e-01	ci left: 1.247050e-03	ci right 1.421949e-03	k: 906	n:680000
OR6Y1   680000 perm   308 sec   (2206 perm/sec)   p_kst 1.332353e-03   p_cons 2.754618e-01   p_joint 2.394118e-03

Joint ci ratio: 9.764187e-02	ci left: 2.216618e-03	ci right 2.445563e-03	k: 1607	n:690000
Cons ci ratio: 7.653402e-03	ci left: 2.744128e-01	ci right 2.765224e-01	k: 190072	n:690000
KS ci ratio: 1.295052e-01	ci left: 1.240194e-03	ci right 1.413312e-03	k: 914	n:690000
OR6Y1   690000 perm   316 sec   (2186 perm/sec)   p_kst 1.324638e-03   p_cons 2.754667e-01   p_joint 2.328986e-03

Joint ci ratio: 1.018222e-01	ci left: 2.005250e-03	ci right 2.221761e-03	k: 1478	n:700000
Cons ci ratio: 7.599345e-03	ci left: 2.743780e-01	ci right 2.764724e-01	k: 192797	n:700000
KS ci ratio: 1.286643e-01	ci left: 1.239066e-03	ci right 1.410818e-03	k: 926	n:700000
OR6Y1   700000 perm   323 sec   (2167 perm/sec)   p_kst 1.322857e-03   p_cons 2.754243e-01   p_joint 2.111429e-03

Joint ci ratio: 1.009049e-01	ci left: 2.014071e-03	ci right 2.229460e-03	k: 1505	n:710000
Cons ci ratio: 7.545433e-03	ci left: 2.743963e-01	ci right 2.764760e-01	k: 195559	n:710000
KS ci ratio: 1.278397e-01	ci left: 1.237974e-03	ci right 1.408390e-03	k: 938	n:710000
OR6Y1   710000 perm   331 sec   (2148 perm/sec)   p_kst 1.321127e-03   p_cons 2.754352e-01   p_joint 2.119718e-03

Joint ci ratio: 9.988144e-02	ci left: 2.028073e-03	ci right 2.242630e-03	k: 1536	n:720000
Cons ci ratio: 7.491792e-03	ci left: 2.744599e-01	ci right 2.765252e-01	k: 198354	n:720000
KS ci ratio: 1.268971e-01	ci left: 1.239604e-03	ci right 1.408893e-03	k: 952	n:720000
OR6Y1   720000 perm   338 sec   (2129 perm/sec)   p_kst 1.322222e-03   p_cons 2.754917e-01   p_joint 2.133333e-03

Joint ci ratio: 9.911046e-02	ci left: 2.032350e-03	ci right 2.245604e-03	k: 1560	n:730000
Cons ci ratio: 7.440019e-03	ci left: 2.744822e-01	ci right 2.765333e-01	k: 201120	n:730000
KS ci ratio: 1.259751e-01	ci left: 1.241195e-03	ci right 1.409377e-03	k: 966	n:730000
OR6Y1   730000 perm   346 sec   (2111 perm/sec)   p_kst 1.323288e-03   p_cons 2.755068e-01   p_joint 2.136986e-03

Joint ci ratio: 9.829493e-02	ci left: 2.039154e-03	ci right 2.251260e-03	k: 1586	n:740000
Cons ci ratio: 7.388104e-03	ci left: 2.745687e-01	ci right 2.766061e-01	k: 203934	n:740000
KS ci ratio: 1.250729e-01	ci left: 1.242747e-03	ci right 1.409844e-03	k: 980	n:740000
OR6Y1   740000 perm   354 sec   (2093 perm/sec)   p_kst 1.324324e-03   p_cons 2.755865e-01   p_joint 2.143243e-03

Joint ci ratio: 9.303859e-02	ci left: 2.251445e-03	ci right 2.472427e-03	k: 1770	n:750000
Cons ci ratio: 7.337775e-03	ci left: 2.746249e-01	ci right 2.766488e-01	k: 206727	n:750000
KS ci ratio: 1.241898e-01	ci left: 1.244262e-03	ci right 1.410295e-03	k: 994	n:750000
OR6Y1   750000 perm   361 sec   (2075 perm/sec)   p_kst 1.325333e-03   p_cons 2.756360e-01   p_joint 2.360000e-03

Joint ci ratio: 9.254378e-02	ci left: 2.246240e-03	ci right 2.465475e-03	k: 1789	n:760000
Cons ci ratio: 7.290622e-03	ci left: 2.745615e-01	ci right 2.765718e-01	k: 209430	n:760000
KS ci ratio: 1.237558e-01	ci left: 1.236815e-03	ci right 1.401235e-03	k: 1001	n:760000
OR6Y1   760000 perm   369 sec   (2059 perm/sec)   p_kst 1.317105e-03   p_cons 2.755658e-01   p_joint 2.353947e-03

Joint ci ratio: 9.187876e-02	ci left: 2.250056e-03	ci right 2.468001e-03	k: 1815	n:770000
Cons ci ratio: 7.245593e-03	ci left: 2.744323e-01	ci right 2.764292e-01	k: 212081	n:770000
KS ci ratio: 1.230822e-01	ci left: 1.234597e-03	ci right 1.397763e-03	k: 1012	n:770000
OR6Y1   770000 perm   377 sec   (2042 perm/sec)   p_kst 1.314286e-03   p_cons 2.754299e-01   p_joint 2.357143e-03

Joint ci ratio: 9.130243e-02	ci left: 2.250021e-03	ci right 2.466522e-03	k: 1838	n:780000
Cons ci ratio: 7.200369e-03	ci left: 2.743627e-01	ci right 2.763466e-01	k: 214776	n:780000
KS ci ratio: 1.220619e-01	ci left: 1.239895e-03	ci right 1.402306e-03	k: 1029	n:780000
OR6Y1   780000 perm   385 sec   (2025 perm/sec)   p_kst 1.319231e-03   p_cons 2.753538e-01   p_joint 2.356410e-03

Joint ci ratio: 1.015596e-01	ci left: 1.786662e-03	ci right 1.979045e-03	k: 1486	n:790000
Cons ci ratio: 7.153144e-03	ci left: 2.744531e-01	ci right 2.764245e-01	k: 217596	n:790000
KS ci ratio: 1.215911e-01	ci left: 1.234018e-03	ci right 1.394990e-03	k: 1037	n:790000
OR6Y1   790000 perm   393 sec   (2008 perm/sec)   p_kst 1.312658e-03   p_cons 2.754380e-01   p_joint 1.881013e-03

Joint ci ratio: 1.009170e-01	ci left: 1.787478e-03	ci right 1.978658e-03	k: 1505	n:800000
Cons ci ratio: 7.107303e-03	ci left: 2.745149e-01	ci right 2.764742e-01	k: 220395	n:800000
KS ci ratio: 1.208367e-01	ci left: 1.234350e-03	ci right 1.394296e-03	k: 1050	n:800000
OR6Y1   800000 perm   402 sec   (1991 perm/sec)   p_kst 1.312500e-03   p_cons 2.754937e-01   p_joint 1.881250e-03

Joint ci ratio: 1.005177e-01	ci left: 1.779852e-03	ci right 1.969418e-03	k: 1517	n:810000
Cons ci ratio: 7.061219e-03	ci left: 2.746382e-01	ci right 2.765856e-01	k: 223245	n:810000
KS ci ratio: 1.200963e-01	ci left: 1.234677e-03	ci right 1.393615e-03	k: 1063	n:810000
OR6Y1   810000 perm   410 sec   (1975 perm/sec)   p_kst 1.312346e-03   p_cons 2.756111e-01   p_joint 1.872840e-03

Joint ci ratio: 9.976450e-02	ci left: 1.785493e-03	ci right 1.974152e-03	k: 1540	n:820000
Cons ci ratio: 7.017498e-03	ci left: 2.746745e-01	ci right 2.766100e-01	k: 226026	n:820000
KS ci ratio: 1.194248e-01	ci left: 1.233816e-03	ci right 1.391692e-03	k: 1075	n:820000
OR6Y1   820000 perm   419 sec   (1959 perm/sec)   p_kst 1.310976e-03   p_cons 2.756415e-01   p_joint 1.878049e-03

Joint ci ratio: 9.934668e-02	ci left: 1.779253e-03	ci right 1.966420e-03	k: 1553	n:830000
Cons ci ratio: 6.974852e-03	ci left: 2.746943e-01	ci right 2.766181e-01	k: 228794	n:830000
KS ci ratio: 1.186553e-01	ci left: 1.235316e-03	ci right 1.392294e-03	k: 1089	n:830000
OR6Y1   830000 perm   427 sec   (1944 perm/sec)   p_kst 1.312048e-03   p_cons 2.756554e-01   p_joint 1.871084e-03

Joint ci ratio: 9.890245e-02	ci left: 1.774325e-03	ci right 1.960090e-03	k: 1567	n:840000
Cons ci ratio: 6.933140e-03	ci left: 2.747041e-01	ci right 2.766165e-01	k: 231554	n:840000
KS ci ratio: 1.177937e-01	ci left: 1.239094e-03	ci right 1.395329e-03	k: 1105	n:840000
OR6Y1   840000 perm   435 sec   (1929 perm/sec)   p_kst 1.315476e-03   p_cons 2.756595e-01   p_joint 1.865476e-03

Joint ci ratio: 9.843297e-02	ci left: 1.770662e-03	ci right 1.955112e-03	k: 1582	n:850000
Cons ci ratio: 6.891761e-03	ci left: 2.747373e-01	ci right 2.766384e-01	k: 234334	n:850000
KS ci ratio: 1.172124e-01	ci left: 1.237077e-03	ci right 1.392235e-03	k: 1116	n:850000
OR6Y1   850000 perm   444 sec   (1915 perm/sec)   p_kst 1.312941e-03   p_cons 2.756871e-01   p_joint 1.861176e-03

Joint ci ratio: 9.787810e-02	ci left: 1.770489e-03	ci right 1.953822e-03	k: 1600	n:860000
Cons ci ratio: 6.851433e-03	ci left: 2.747511e-01	ci right 2.766411e-01	k: 237098	n:860000
KS ci ratio: 1.163817e-01	ci left: 1.240754e-03	ci right 1.395194e-03	k: 1132	n:860000
OR6Y1   860000 perm   453 sec   (1900 perm/sec)   p_kst 1.316279e-03   p_cons 2.756953e-01   p_joint 1.860465e-03

Joint ci ratio: 9.736264e-02	ci left: 1.769202e-03	ci right 1.951382e-03	k: 1617	n:870000
Cons ci ratio: 6.812766e-03	ci left: 2.747084e-01	ci right 2.765874e-01	k: 239813	n:870000
KS ci ratio: 1.155683e-01	ci left: 1.244350e-03	ci right 1.398082e-03	k: 1148	n:870000
OR6Y1   870000 perm   461 sec   (1885 perm/sec)   p_kst 1.319540e-03   p_cons 2.756471e-01   p_joint 1.858621e-03

Joint ci ratio: 9.676634e-02	ci left: 1.771273e-03	ci right 1.952486e-03	k: 1637	n:880000
Cons ci ratio: 6.773821e-03	ci left: 2.747211e-01	ci right 2.765895e-01	k: 242576	n:880000
KS ci ratio: 1.148706e-01	ci left: 1.245660e-03	ci right 1.398562e-03	k: 1162	n:880000
OR6Y1   880000 perm   470 sec   (1871 perm/sec)   p_kst 1.320455e-03   p_cons 2.756545e-01   p_joint 1.860227e-03

Joint ci ratio: 9.629731e-02	ci left: 1.768914e-03	ci right 1.948959e-03	k: 1653	n:890000
Cons ci ratio: 6.734456e-03	ci left: 2.747976e-01	ci right 2.766556e-01	k: 245396	n:890000
KS ci ratio: 1.142826e-01	ci left: 1.244761e-03	ci right 1.396717e-03	k: 1174	n:890000
OR6Y1   890000 perm   479 sec   (1858 perm/sec)   p_kst 1.319101e-03   p_cons 2.757258e-01   p_joint 1.857303e-03

Joint ci ratio: 9.595022e-02	ci left: 1.762272e-03	ci right 1.940958e-03	k: 1665	n:900000
Cons ci ratio: 6.695788e-03	ci left: 2.748713e-01	ci right 2.767190e-01	k: 248215	n:900000
KS ci ratio: 1.139441e-01	ci left: 1.238486e-03	ci right 1.389198e-03	k: 1181	n:900000
OR6Y1   900000 perm   488 sec   (1844 perm/sec)   p_kst 1.312222e-03   p_cons 2.757944e-01   p_joint 1.850000e-03

Joint ci ratio: 9.526620e-02	ci left: 1.768650e-03	ci right 1.946633e-03	k: 1689	n:910000
Cons ci ratio: 6.658090e-03	ci left: 2.749247e-01	ci right 2.767624e-01	k: 251017	n:910000
KS ci ratio: 1.131804e-01	ci left: 1.241959e-03	ci right 1.392013e-03	k: 1197	n:910000
OR6Y1   910000 perm   497 sec   (1830 perm/sec)   p_kst 1.315385e-03   p_cons 2.758429e-01   p_joint 1.856044e-03

Joint ci ratio: 9.456896e-02	ci left: 1.775955e-03	ci right 1.953292e-03	k: 1714	n:920000
Cons ci ratio: 6.621399e-03	ci left: 2.749543e-01	ci right 2.767819e-01	k: 253798	n:920000
KS ci ratio: 1.126645e-01	ci left: 1.240078e-03	ci right 1.389177e-03	k: 1208	n:920000
OR6Y1   920000 perm   506 sec   (1817 perm/sec)   p_kst 1.313043e-03   p_cons 2.758674e-01   p_joint 1.863043e-03

Joint ci ratio: 9.391384e-02	ci left: 1.782057e-03	ci right 1.958703e-03	k: 1738	n:930000
Cons ci ratio: 6.585362e-03	ci left: 2.749799e-01	ci right 2.767978e-01	k: 256576	n:930000
KS ci ratio: 1.121096e-01	ci left: 1.239285e-03	ci right 1.387505e-03	k: 1220	n:930000
OR6Y1   930000 perm   516 sec   (1804 perm/sec)   p_kst 1.311828e-03   p_cons 2.758882e-01   p_joint 1.868817e-03

Joint ci ratio: 9.343158e-02	ci left: 1.781799e-03	ci right 1.957463e-03	k: 1756	n:940000
Cons ci ratio: 6.548982e-03	ci left: 2.750614e-01	ci right 2.768697e-01	k: 259407	n:940000
KS ci ratio: 1.114723e-01	ci left: 1.240578e-03	ci right 1.388054e-03	k: 1234	n:940000
OR6Y1   940000 perm   525 sec   (1791 perm/sec)   p_kst 1.312766e-03   p_cons 2.759649e-01   p_joint 1.868085e-03

Joint ci ratio: 9.295667e-02	ci left: 1.781549e-03	ci right 1.956247e-03	k: 1774	n:950000
Cons ci ratio: 6.514040e-03	ci left: 2.750897e-01	ci right 2.768885e-01	k: 262189	n:950000
KS ci ratio: 1.108457e-01	ci left: 1.241846e-03	ci right 1.388590e-03	k: 1248	n:950000
OR6Y1   950000 perm   534 sec   (1778 perm/sec)   p_kst 1.313684e-03   p_cons 2.759884e-01   p_joint 1.867368e-03

Joint ci ratio: 9.246310e-02	ci left: 1.782324e-03	ci right 1.956120e-03	k: 1793	n:960000
Cons ci ratio: 6.480985e-03	ci left: 2.750352e-01	ci right 2.768245e-01	k: 264892	n:960000
KS ci ratio: 1.102733e-01	ci left: 1.242078e-03	ci right 1.388041e-03	k: 1261	n:960000
OR6Y1   960000 perm   544 sec   (1766 perm/sec)   p_kst 1.313542e-03   p_cons 2.759292e-01   p_joint 1.867708e-03

Joint ci ratio: 9.197731e-02	ci left: 1.783085e-03	ci right 1.955993e-03	k: 1812	n:970000
Cons ci ratio: 6.447479e-03	ci left: 2.750405e-01	ci right 2.768206e-01	k: 267652	n:970000
KS ci ratio: 1.097097e-01	ci left: 1.242306e-03	ci right 1.387502e-03	k: 1274	n:970000
OR6Y1   970000 perm   553 sec   (1754 perm/sec)   p_kst 1.313402e-03   p_cons 2.759299e-01   p_joint 1.868041e-03

Joint ci ratio: 9.144910e-02	ci left: 1.785828e-03	ci right 1.957954e-03	k: 1833	n:980000
Cons ci ratio: 6.413686e-03	ci left: 2.750958e-01	ci right 2.768668e-01	k: 270461	n:980000
KS ci ratio: 1.092822e-01	ci left: 1.239554e-03	ci right 1.383828e-03	k: 1284	n:980000
OR6Y1   980000 perm   563 sec   (1742 perm/sec)   p_kst 1.310204e-03   p_cons 2.759806e-01   p_joint 1.870408e-03

Joint ci ratio: 9.090534e-02	ci left: 1.789505e-03	ci right 1.960905e-03	k: 1855	n:990000
Cons ci ratio: 6.381063e-03	ci left: 2.751095e-01	ci right 2.768716e-01	k: 273230	n:990000
KS ci ratio: 1.088175e-01	ci left: 1.237841e-03	ci right 1.381264e-03	k: 1295	n:990000
OR6Y1   990000 perm   572 sec   (1730 perm/sec)   p_kst 1.308081e-03   p_cons 2.759899e-01   p_joint 1.873737e-03

Joint ci ratio: 9.058890e-02	ci left: 1.784315e-03	ci right 1.954591e-03	k: 1868	n:1000000
Cons ci ratio: 6.348838e-03	ci left: 2.751290e-01	ci right 2.768823e-01	k: 276005	n:1000000
KS ci ratio: 1.084835e-01	ci left: 1.233245e-03	ci right 1.375668e-03	k: 1303	n:1000000
OR6Y1   1000000 perm   582 sec   (1718 perm/sec)   p_kst 1.303000e-03   p_cons 2.760050e-01   p_joint 1.868000e-03

Joint ci ratio: 9.010800e-02	ci left: 1.786003e-03	ci right 1.955488e-03	k: 1888	n:1010000
Cons ci ratio: 6.317675e-03	ci left: 2.751115e-01	ci right 2.768561e-01	k: 278743	n:1010000
KS ci ratio: 1.080289e-01	ci left: 1.231631e-03	ci right 1.373234e-03	k: 1314	n:1010000
OR6Y1   1010000 perm   592 sec   (1705 perm/sec)   p_kst 1.300990e-03   p_cons 2.759832e-01   p_joint 1.869307e-03

Joint ci ratio: 8.590536e-02	ci left: 1.949718e-03	ci right 2.125678e-03	k: 2077	n:1020000
Cons ci ratio: 6.285563e-03	ci left: 2.751836e-01	ci right 2.769197e-01	k: 281572	n:1020000
KS ci ratio: 1.072968e-01	ci left: 1.236728e-03	ci right 1.377893e-03	k: 1332	n:1020000
OR6Y1   1020000 perm   602 sec   (1694 perm/sec)   p_kst 1.305882e-03   p_cons 2.760510e-01   p_joint 2.036275e-03

Joint ci ratio: 8.533206e-02	ci left: 1.957392e-03	ci right 2.132806e-03	k: 2105	n:1030000
Cons ci ratio: 6.254088e-03	ci left: 2.752445e-01	ci right 2.769723e-01	k: 284391	n:1030000
KS ci ratio: 1.066981e-01	ci left: 1.238895e-03	ci right 1.379468e-03	k: 1347	n:1030000
OR6Y1   1030000 perm   612 sec   (1683 perm/sec)   p_kst 1.307767e-03   p_cons 2.761078e-01   p_joint 2.043689e-03

Joint ci ratio: 8.486977e-02	ci left: 1.960215e-03	ci right 2.134884e-03	k: 2128	n:1040000
Cons ci ratio: 6.224099e-03	ci left: 2.752390e-01	ci right 2.769584e-01	k: 287142	n:1040000
KS ci ratio: 1.061092e-01	ci left: 1.241022e-03	ci right 1.381010e-03	k: 1362	n:1040000
OR6Y1   1040000 perm   622 sec   (1672 perm/sec)   p_kst 1.309615e-03   p_cons 2.760981e-01   p_joint 2.046154e-03

Joint ci ratio: 8.455283e-02	ci left: 1.956462e-03	ci right 2.130113e-03	k: 2144	n:1050000
Cons ci ratio: 6.194286e-03	ci left: 2.752498e-01	ci right 2.769610e-01	k: 289910	n:1050000
KS ci ratio: 1.056452e-01	ci left: 1.240328e-03	ci right 1.379589e-03	k: 1374	n:1050000
OR6Y1   1050000 perm   632 sec   (1662 perm/sec)   p_kst 1.308571e-03   p_cons 2.761048e-01   p_joint 2.041905e-03

Joint ci ratio: 8.423941e-02	ci left: 1.952780e-03	ci right 2.125431e-03	k: 2160	n:1060000
Cons ci ratio: 6.164752e-03	ci left: 2.752698e-01	ci right 2.769729e-01	k: 292688	n:1060000
KS ci ratio: 1.053777e-01	ci left: 1.235056e-03	ci right 1.373352e-03	k: 1381	n:1060000
OR6Y1   1060000 perm   642 sec   (1652 perm/sec)   p_kst 1.302830e-03   p_cons 2.761208e-01   p_joint 2.037736e-03

Joint ci ratio: 8.296132e-02	ci left: 1.995840e-03	ci right 2.169490e-03	k: 2227	n:1070000
Cons ci ratio: 6.136267e-03	ci left: 2.752484e-01	ci right 2.769435e-01	k: 295422	n:1070000
KS ci ratio: 1.049232e-01	ci left: 1.234434e-03	ci right 1.372027e-03	k: 1393	n:1070000
OR6Y1   1070000 perm   652 sec   (1641 perm/sec)   p_kst 1.301869e-03   p_cons 2.760953e-01   p_joint 2.081308e-03

Joint ci ratio: 8.264676e-02	ci left: 1.992774e-03	ci right 2.165469e-03	k: 2244	n:1080000
Cons ci ratio: 6.107538e-03	ci left: 2.752690e-01	ci right 2.769563e-01	k: 298201	n:1080000
KS ci ratio: 1.044745e-01	ci left: 1.233824e-03	ci right 1.370725e-03	k: 1405	n:1080000
OR6Y1   1080000 perm   662 sec   (1631 perm/sec)   p_kst 1.300926e-03   p_cons 2.761120e-01   p_joint 2.077778e-03

Joint ci ratio: 8.229930e-02	ci left: 1.991564e-03	ci right 2.163393e-03	k: 2263	n:1090000
Cons ci ratio: 6.078747e-03	ci left: 2.753195e-01	ci right 2.769991e-01	k: 301013	n:1090000
KS ci ratio: 1.039582e-01	ci left: 1.235014e-03	ci right 1.371328e-03	k: 1419	n:1090000
OR6Y1   1090000 perm   673 sec   (1620 perm/sec)   p_kst 1.301835e-03   p_cons 2.761587e-01   p_joint 2.076147e-03

Joint ci ratio: 8.184848e-02	ci left: 1.995719e-03	ci right 2.166919e-03	k: 2288	n:1100000
Cons ci ratio: 6.051103e-03	ci left: 2.753201e-01	ci right 2.769920e-01	k: 303771	n:1100000
KS ci ratio: 1.033052e-01	ci left: 1.239726e-03	ci right 1.375649e-03	k: 1437	n:1100000
OR6Y1   1100000 perm   683 sec   (1609 perm/sec)   p_kst 1.306364e-03   p_cons 2.761555e-01   p_joint 2.080000e-03

Joint ci ratio: 8.149327e-02	ci left: 1.995390e-03	ci right 2.165784e-03	k: 2308	n:1110000
Cons ci ratio: 6.024049e-03	ci left: 2.753063e-01	ci right 2.769706e-01	k: 306513	n:1110000
KS ci ratio: 1.029837e-01	ci left: 1.236456e-03	ci right 1.371573e-03	k: 1446	n:1110000
OR6Y1   1110000 perm   694 sec   (1599 perm/sec)   p_kst 1.302703e-03   p_cons 2.761378e-01   p_joint 2.079279e-03

Joint ci ratio: 8.109032e-02	ci left: 1.997692e-03	ci right 2.167399e-03	k: 2331	n:1120000
Cons ci ratio: 5.997075e-03	ci left: 2.753114e-01	ci right 2.769683e-01	k: 309276	n:1120000
KS ci ratio: 1.023838e-01	ci left: 1.240205e-03	ci right 1.374895e-03	k: 1463	n:1120000
OR6Y1   1120000 perm   705 sec   (1589 perm/sec)   p_kst 1.306250e-03   p_cons 2.761393e-01   p_joint 2.081250e-03

Joint ci ratio: 8.067612e-02	ci left: 2.000823e-03	ci right 2.169887e-03	k: 2355	n:1130000
Cons ci ratio: 5.970485e-03	ci left: 2.753147e-01	ci right 2.769643e-01	k: 312037	n:1130000
KS ci ratio: 1.017599e-01	ci left: 1.244753e-03	ci right 1.379063e-03	k: 1481	n:1130000
OR6Y1   1130000 perm   715 sec   (1579 perm/sec)   p_kst 1.310619e-03   p_cons 2.761389e-01   p_joint 2.084071e-03

Joint ci ratio: 8.031895e-02	ci left: 2.001322e-03	ci right 2.169645e-03	k: 2376	n:1140000
Cons ci ratio: 5.944690e-03	ci left: 2.752882e-01	ci right 2.769305e-01	k: 314764	n:1140000
KS ci ratio: 1.011473e-01	ci left: 1.249223e-03	ci right 1.383156e-03	k: 1499	n:1140000
OR6Y1   1140000 perm   726 sec   (1570 perm/sec)   p_kst 1.314912e-03   p_cons 2.761088e-01   p_joint 2.084211e-03

Joint ci ratio: 7.991641e-02	ci left: 2.004371e-03	ci right 2.172066e-03	k: 2400	n:1150000
Cons ci ratio: 5.919883e-03	ci left: 2.752179e-01	ci right 2.768528e-01	k: 317440	n:1150000
KS ci ratio: 1.006120e-01	ci left: 1.251922e-03	ci right 1.385392e-03	k: 1515	n:1150000
OR6Y1   1150000 perm   737 sec   (1560 perm/sec)   p_kst 1.317391e-03   p_cons 2.760348e-01   p_joint 2.086957e-03

Joint ci ratio: 7.950343e-02	ci left: 2.008214e-03	ci right 2.175322e-03	k: 2425	n:1160000
Cons ci ratio: 5.894163e-03	ci left: 2.752314e-01	ci right 2.768593e-01	k: 320212	n:1160000
KS ci ratio: 1.002819e-01	ci left: 1.249534e-03	ci right 1.382287e-03	k: 1525	n:1160000
OR6Y1   1160000 perm   748 sec   (1551 perm/sec)   p_kst 1.314655e-03   p_cons 2.760448e-01   p_joint 2.090517e-03

Joint ci ratio: 7.919398e-02	ci left: 2.006967e-03	ci right 2.173291e-03	k: 2444	n:1170000
Cons ci ratio: 5.869139e-03	ci left: 2.752200e-01	ci right 2.768409e-01	k: 322955	n:1170000
KS ci ratio: 1.001184e-01	ci left: 1.243020e-03	ci right 1.374853e-03	k: 1530	n:1170000
OR6Y1   1170000 perm   759 sec   (1541 perm/sec)   p_kst 1.307692e-03   p_cons 2.760299e-01   p_joint 2.088889e-03

Joint ci ratio: 7.880804e-02	ci left: 2.009896e-03	ci right 2.175614e-03	k: 2468	n:1180000
Cons ci ratio: 5.843440e-03	ci left: 2.752766e-01	ci right 2.768906e-01	k: 325778	n:1180000
KS ci ratio: 9.972839e-02	ci left: 1.242401e-03	ci right 1.373625e-03	k: 1542	n:1180000
OR6Y1   1180000 perm   770 sec   (1532 perm/sec)   p_kst 1.306780e-03   p_cons 2.760831e-01   p_joint 2.091525e-03

Outputting figure to mutsig2_images.part000000000123/OR6Y1.2_980_1180000_0.0013068_0.27608_0.0020915.png
                gene_name: OR6Y1
               theta_stop: 0.100 
                    nperm: 1180000 
                     p_ks: 0.0013 
        ci_ks_bounds_left: 0.0012 
       ci_ks_bounds_right: 0.0014 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.0021 
     ci_joint_bounds_left: 0.0020 
    ci_joint_bounds_right: 0.0022 

Current progress: 83 percent done.
OR7A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.654673e-02	ci left: 8.416271e-01	ci right 8.557691e-01	k: 8488	n:10000
KS ci ratio: 3.367660e-02	ci left: 5.655412e-01	ci right 5.850149e-01	k: 5753	n:10000
OR7A5   10000 perm   2 sec   (5145 perm/sec)   p_kst 5.753000e-01   p_cons 8.488000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000123/OR7A5.2_964_10000_0.5753_0.8488_1.png
                gene_name: OR7A5
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000123
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 123 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1543>
Subject: Job 9877786: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1543>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000124> was used as the working directory.
Started at Fri Oct  5 22:50:12 2012
Results reported at Fri Oct  5 22:53:12 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000124.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000124.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 124  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000124.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    193.90 sec.
    Max Memory :      2020 MB
    Max Swap   :      4669 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
124
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 124
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 124: processing genes 11153 - 11243
Calculating significance of each gene.
Using projection method.
11153	OR8S1	1
11154	OR8U8	1
11155	OR9A2	1
11156	OR9A4	1
11157	OR9G1	1
11158	OR9G4	4.156121e-02
11159	OR9G9	1
11160	OR9I1	1
11161	OR9K2	9.350076e-02
11162	OR9Q1	1
11163	OR9Q2	6.760793e-03
11164	ORAI1	1
11165	ORAI2	1
11166	ORAI3	1
11167	ORAOV1	1
11168	ORC1L	1
11169	ORC2L	1
11170	ORC3L	1
11171	ORC4L	1
11172	ORC5L	1
11173	ORC6L	1
11174	ORM1	1
11175	ORM2	1
11176	ORMDL1	1
11177	ORMDL2	1
11178	ORMDL3	1
11179	OS9	1
11180	OSBP	1
11181	OSBP2	1
In gene OSBPL10 the following bins exceed PROBCAP:
    PRAD-EJ-5496	categ 6	N = 2108    n = 1	mu =   1.66e-07
11182	OSBPL10	4.646269e-02
11183	OSBPL11	1
11184	OSBPL1A	1
11185	OSBPL2	1
11186	OSBPL3	1.919480e-01
11187	OSBPL5	1
11188	OSBPL6	1
11189	OSBPL7	1
11190	OSBPL8	1
11191	OSBPL9	1
11192	OSCAR	1
11193	OSCP1	1
11194	OSGEP	1
11195	OSGEPL1	1
11196	OSGIN1	2.725419e-02
11197	OSGIN2	1
11198	OSM	1
11199	OSMR	1
11200	OSR1	1
11201	OSR2	1
11202	OSTBETA	1
11203	OSTC	1
11204	OSTF1	1
11205	OSTM1	1
11206	OSTN	1
11207	OSTalpha	1
11208	OTC	1
11209	OTOA	1
11210	OTOF	2.908968e-01
11211	OTOL1	1
11212	OTOP1	1.291923e-01
11213	OTOP2	1
11214	OTOP3	1
11215	OTOR	1
11216	OTOS	1
11217	OTP	1
11218	OTUB1	1
11219	OTUB2	1
11220	OTUD3	1
11221	OTUD4	1.477887e-01
11222	OTUD5	1
11223	OTUD6A	1
11224	OTUD6B	1
11225	OTUD7A	1
11226	OTUD7B	1
11227	OTX1	1
11228	OTX2	1.050263e-01
11229	OVCA2	1
11230	OVCH1	1
11231	OVCH2	1
11232	OVGP1	8.786978e-02
11233	OVOL1	1
11234	OVOL2	1
11235	OXA1L	1
11236	OXCT1	1
11237	OXCT2	1
11238	OXER1	1
11239	OXGR1	1
11240	OXNAD1	1
11241	OXR1	1
11242	OXSM	1
11243	OXSR1	1
Done

Running MutSig 2:
Scatter job 124: processing genes 11153 - 11243
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
OR9Q2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.217638e-02	ci left: 3.512799e-01	ci right 3.702013e-01	k: 3607	n:10000
Cons ci ratio: 8.093572e-02	ci left: 1.822537e-01	ci right 1.977273e-01	k: 1899	n:10000
KS ci ratio: 1.451283e-02	ci left: 8.729587e-01	ci right 8.858194e-01	k: 8795	n:10000
OR9Q2   10000 perm   2 sec   (6290 perm/sec)   p_kst 8.795000e-01   p_cons 1.899000e-01   p_joint 3.607000e-01

Outputting figure to mutsig2_images.part000000000124/OR9Q2.2_949_10000_0.8795_0.1899_0.3607.png
                gene_name: OR9Q2
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 50 percent done.
OTOP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.233520e-01	ci left: 6.705543e-03	ci right 1.038936e-02	k: 84	n:10000
Cons ci ratio: 1.067067e-01	ci left: 1.125202e-01	ci right 1.253028e-01	k: 1188	n:10000
KS ci ratio: 3.960612e-01	ci left: 7.782754e-03	ci right 1.171078e-02	k: 96	n:10000
OTOP1   10000 perm   2 sec   (6004 perm/sec)   p_kst 9.600000e-03   p_cons 1.188000e-01   p_joint 8.400000e-03

Joint ci ratio: 1.806525e-01	ci left: 2.091926e-02	ci right 2.512099e-02	k: 459	n:20000
Cons ci ratio: 7.957616e-02	ci left: 1.038780e-01	ci right 1.125363e-01	k: 2163	n:20000
KS ci ratio: 2.786178e-01	ci left: 8.434855e-03	ci right 1.121045e-02	k: 195	n:20000
OTOP1   20000 perm   4 sec   (5274 perm/sec)   p_kst 9.750000e-03   p_cons 1.081500e-01   p_joint 2.295000e-02

Joint ci ratio: 1.493980e-01	ci left: 2.075518e-02	ci right 2.413818e-02	k: 672	n:30000
Cons ci ratio: 6.272150e-02	ci left: 1.115751e-01	ci right 1.188329e-01	k: 3455	n:30000
KS ci ratio: 2.225749e-01	ci left: 9.093958e-03	ci right 1.140237e-02	k: 306	n:30000
OTOP1   30000 perm   6 sec   (5028 perm/sec)   p_kst 1.020000e-02   p_cons 1.151667e-01   p_joint 2.240000e-02

Joint ci ratio: 2.199929e-01	ci left: 7.008526e-03	ci right 8.764048e-03	k: 314	n:40000
Cons ci ratio: 5.393567e-02	ci left: 1.134949e-01	ci right 1.198108e-01	k: 4665	n:40000
KS ci ratio: 1.902672e-01	ci left: 9.500442e-03	ci right 1.152157e-02	k: 419	n:40000
OTOP1   40000 perm   8 sec   (4862 perm/sec)   p_kst 1.047500e-02   p_cons 1.166250e-01   p_joint 7.850000e-03

Joint ci ratio: 2.140960e-01	ci left: 5.946893e-03	ci right 7.391279e-03	k: 332	n:50000
Cons ci ratio: 4.826270e-02	ci left: 1.137398e-01	ci right 1.193848e-01	k: 5827	n:50000
KS ci ratio: 1.711719e-01	ci left: 9.490989e-03	ci right 1.128654e-02	k: 518	n:50000
OTOP1   50000 perm   11 sec   (4717 perm/sec)   p_kst 1.036000e-02   p_cons 1.165400e-01   p_joint 6.640000e-03

Joint ci ratio: 1.787681e-01	ci left: 7.239025e-03	ci right 8.675848e-03	k: 476	n:60000
Cons ci ratio: 4.391422e-02	ci left: 1.146530e-01	ci right 1.198174e-01	k: 7033	n:60000
KS ci ratio: 1.571272e-01	ci left: 9.459494e-03	ci right 1.108840e-02	k: 615	n:60000
OTOP1   60000 perm   13 sec   (4596 perm/sec)   p_kst 1.025000e-02   p_cons 1.172167e-01   p_joint 7.933333e-03

Joint ci ratio: 6.972731e-02	ci left: 4.169168e-02	ci right 4.471776e-02	k: 3023	n:70000
Cons ci ratio: 4.067730e-02	ci left: 1.147410e-01	ci right 1.195194e-01	k: 8198	n:70000
KS ci ratio: 1.462619e-01	ci left: 9.413798e-03	ci right 1.091294e-02	k: 710	n:70000
OTOP1   70000 perm   16 sec   (4487 perm/sec)   p_kst 1.014286e-02   p_cons 1.171143e-01   p_joint 4.318571e-02

Joint ci ratio: 1.570743e-01	ci left: 7.117951e-03	ci right 8.343154e-03	k: 617	n:80000
Cons ci ratio: 3.804621e-02	ci left: 1.149167e-01	ci right 1.193861e-01	k: 9371	n:80000
KS ci ratio: 1.366096e-01	ci left: 9.491134e-03	ci right 1.089473e-02	k: 814	n:80000
OTOP1   80000 perm   18 sec   (4394 perm/sec)   p_kst 1.017500e-02   p_cons 1.171375e-01   p_joint 7.712500e-03

Joint ci ratio: 1.489846e-01	ci left: 7.064375e-03	ci right 8.212146e-03	k: 686	n:90000
Cons ci ratio: 3.582512e-02	ci left: 1.153038e-01	ci right 1.195209e-01	k: 10566	n:90000
KS ci ratio: 1.288589e-01	ci left: 9.521550e-03	ci right 1.084364e-02	k: 915	n:90000
OTOP1   90000 perm   21 sec   (4305 perm/sec)   p_kst 1.016667e-02   p_cons 1.174000e-01   p_joint 7.622222e-03

Joint ci ratio: 5.847979e-02	ci left: 4.174111e-02	ci right 4.426548e-02	k: 4299	n:100000
Cons ci ratio: 3.396068e-02	ci left: 1.155698e-01	ci right 1.195724e-01	k: 11756	n:100000
KS ci ratio: 1.227210e-01	ci left: 9.479813e-03	ci right 1.072885e-02	k: 1009	n:100000
OTOP1   100000 perm   24 sec   (4224 perm/sec)   p_kst 1.009000e-02   p_cons 1.175600e-01   p_joint 4.299000e-02

Joint ci ratio: 1.356326e-01	ci left: 7.024970e-03	ci right 8.055796e-03	k: 828	n:110000
Cons ci ratio: 3.243384e-02	ci left: 1.153228e-01	ci right 1.191338e-01	k: 12894	n:110000
KS ci ratio: 1.173304e-01	ci left: 9.455717e-03	ci right 1.064306e-02	k: 1104	n:110000
OTOP1   110000 perm   27 sec   (4118 perm/sec)   p_kst 1.003636e-02   p_cons 1.172182e-01   p_joint 7.527273e-03

Joint ci ratio: 1.303944e-01	ci left: 6.987360e-03	ci right 7.970000e-03	k: 896	n:120000
Cons ci ratio: 3.104964e-02	ci left: 1.154266e-01	ci right 1.190753e-01	k: 14069	n:120000
KS ci ratio: 1.129261e-01	ci left: 9.379938e-03	ci right 1.051060e-02	k: 1192	n:120000
OTOP1   120000 perm   30 sec   (4032 perm/sec)   p_kst 9.933333e-03   p_cons 1.172417e-01   p_joint 7.466667e-03

Joint ci ratio: 1.253276e-01	ci left: 7.000901e-03	ci right 7.944346e-03	k: 970	n:130000
Cons ci ratio: 2.981547e-02	ci left: 1.156090e-01	ci right 1.191158e-01	k: 15256	n:130000
KS ci ratio: 1.083022e-01	ci left: 9.436290e-03	ci right 1.052420e-02	k: 1296	n:130000
OTOP1   130000 perm   33 sec   (3957 perm/sec)   p_kst 9.969231e-03   p_cons 1.173538e-01   p_joint 7.461538e-03

Joint ci ratio: 1.205768e-01	ci left: 7.040855e-03	ci right 7.951150e-03	k: 1048	n:140000
Cons ci ratio: 2.867224e-02	ci left: 1.160944e-01	ci right 1.194786e-01	k: 16489	n:140000
KS ci ratio: 1.036813e-01	ci left: 9.582824e-03	ci right 1.063761e-02	k: 1414	n:140000
OTOP1   140000 perm   36 sec   (3890 perm/sec)   p_kst 1.010000e-02   p_cons 1.177786e-01   p_joint 7.485714e-03

Joint ci ratio: 1.162243e-01	ci left: 7.089015e-03	ci right 7.970182e-03	k: 1128	n:150000
Cons ci ratio: 2.768480e-02	ci left: 1.162654e-01	ci right 1.195360e-01	k: 17684	n:150000
KS ci ratio: 9.990211e-02	ci left: 9.652155e-03	ci right 1.067358e-02	k: 1523	n:150000
OTOP1   150000 perm   39 sec   (3824 perm/sec)   p_kst 1.015333e-02   p_cons 1.178933e-01   p_joint 7.520000e-03

Joint ci ratio: 1.124053e-01	ci left: 7.119520e-03	ci right 7.973470e-03	k: 1206	n:160000
Cons ci ratio: 2.684039e-02	ci left: 1.160502e-01	ci right 1.192136e-01	k: 18820	n:160000
KS ci ratio: 9.671780e-02	ci left: 9.670726e-03	ci right 1.065964e-02	k: 1625	n:160000
OTOP1   160000 perm   43 sec   (3755 perm/sec)   p_kst 1.015625e-02   p_cons 1.176250e-01   p_joint 7.537500e-03

Joint ci ratio: 1.095424e-01	ci left: 7.066735e-03	ci right 7.891372e-03	k: 1270	n:170000
Cons ci ratio: 2.604883e-02	ci left: 1.160196e-01	ci right 1.190875e-01	k: 19983	n:170000
KS ci ratio: 9.368295e-02	ci left: 9.716298e-03	ci right 1.067699e-02	k: 1732	n:170000
OTOP1   170000 perm   46 sec   (3696 perm/sec)   p_kst 1.018824e-02   p_cons 1.175471e-01   p_joint 7.470588e-03

Joint ci ratio: 1.062878e-01	ci left: 7.101188e-03	ci right 7.903685e-03	k: 1349	n:180000
Cons ci ratio: 2.533156e-02	ci left: 1.159274e-01	ci right 1.189072e-01	k: 21134	n:180000
KS ci ratio: 9.104200e-02	ci left: 9.730084e-03	ci right 1.066357e-02	k: 1834	n:180000
OTOP1   180000 perm   49 sec   (3638 perm/sec)   p_kst 1.018889e-02   p_cons 1.174111e-01   p_joint 7.494444e-03

Joint ci ratio: 4.540231e-02	ci left: 3.689484e-02	ci right 3.861404e-02	k: 7172	n:190000
Cons ci ratio: 2.463540e-02	ci left: 1.161390e-01	ci right 1.190411e-01	k: 22341	n:190000
KS ci ratio: 8.852021e-02	ci left: 9.763350e-03	ci right 1.067274e-02	k: 1940	n:190000
OTOP1   190000 perm   53 sec   (3581 perm/sec)   p_kst 1.021053e-02   p_cons 1.175842e-01   p_joint 3.774737e-02

Outputting figure to mutsig2_images.part000000000124/OTOP1.2_1863_190000_0.010211_0.11758_0.037747.png
                gene_name: OTOP1
               theta_stop: 0.089 
                    nperm: 190000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0098 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.039 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000124
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 124 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1730>
Subject: Job 9877793: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1730>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000125> was used as the working directory.
Started at Fri Oct  5 22:50:12 2012
Results reported at Fri Oct  5 22:51:03 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000125.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000125.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 125  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000125.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     46.43 sec.
    Max Memory :       886 MB
    Max Swap   :      3770 MB

    Max Processes  :         7
    Max Threads    :        67

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
125
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 125
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 125: processing genes 11244 - 11334
Calculating significance of each gene.
Using projection method.
11244	OXT	1
11245	OXTR	1
11246	P2RX1	1
11247	P2RX2	1
11248	P2RX3	1
11249	P2RX4	1
In gene P2RX5 the following bins exceed PROBCAP:
    PRAD-CH-5792	categ 6	N = 1222    n = 1	mu =   2.67e-07
11250	P2RX5	3.788961e-02
11251	P2RX6	1
11252	P2RX7	1
11253	P2RY1	1.203651e-01
11254	P2RY10	1
11255	P2RY11	1
11256	P2RY12	1
11257	P2RY13	1
11258	P2RY14	1
11259	P2RY2	1
11260	P2RY4	1
11261	P2RY6	1
11262	P2RY8	1
11263	P4HA1	1
11264	P4HA2	1
11265	P4HA3	1
11266	P4HB	1
11267	P4HTM	1
11268	PA2G4	1
11269	PAAF1	1
11270	PABPC1	1
11271	PABPC1L	1
11272	PABPC3	1
11273	PABPC4	1.037053e-01
11274	PABPC5	1
11275	PABPN1	1
11276	PABPN1L	1
11277	PACRG	1
11278	PACRGL	6.592200e-02
11279	PACS1	9.548737e-02
11280	PACS2	1
11281	PACSIN1	1
11282	PACSIN2	1.946800e-01
11283	PACSIN3	1
11284	PADI1	1
11285	PADI2	1
11286	PADI3	1
11287	PADI4	1
11288	PADI6	1
11289	PAEP	1
11290	PAF1	1
11291	PAFAH1B1	1
11292	PAFAH1B2	1
11293	PAFAH1B3	1
11294	PAFAH2	1
11295	PAG1	1
11296	PAGE1	1
11297	PAGE2	1
11298	PAGE2B	1
11299	PAGE4	1
11300	PAGE5	1
11301	PAH	1
11302	PAICS	1
11303	PAIP1	1
11304	PAIP2	1
11305	PAIP2B	1
11306	PAK1	1
11307	PAK1IP1	1
11308	PAK2	1.211156e-01
11309	PAK3	1
11310	PAK4	1
11311	PAK6	1
11312	PAK7	1
11313	PALB2	1
11314	PALLD	1
11315	PALM	1
11316	PALM2	1
11317	PALM2-AKAP2	2.324663e-01
11318	PALMD	2.296533e-02
11319	PAM	1
11320	PAMR1	1
11321	PAN2	1
11322	PAN3	1
11323	PANK1	9.287826e-02
11324	PANK2	1
11325	PANK3	1
11326	PANK4	1
11327	PANX1	1
11328	PANX2	1
11329	PANX3	3.013580e-02
11330	PAOX	1
11331	PAPD4	1
11332	PAPD5	1
11333	PAPD7	1
11334	PAPL	1
Done

Running MutSig 2:
Scatter job 125: processing genes 11244 - 11334
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000125
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 125 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 9877797: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000126> was used as the working directory.
Started at Fri Oct  5 22:50:12 2012
Results reported at Fri Oct  5 22:51:28 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000126.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000126.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 126  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000126.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     69.80 sec.
    Max Memory :      2127 MB
    Max Swap   :      4684 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
126
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 126
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 126: processing genes 11335 - 11424
Calculating significance of each gene.
Using projection method.
11335	PAPLN	5.676619e-02
11336	PAPOLA	1
11337	PAPOLB	1
11338	PAPOLG	1
11339	PAPPA	1.707267e-01
11340	PAPPA2	4.333378e-02
11341	PAPSS1	1
11342	PAPSS2	1
11343	PAQR3	1
11344	PAQR4	1
11345	PAQR5	1
11346	PAQR6	1
11347	PAQR7	1
11348	PAQR8	1
11349	PAQR9	1
11350	PARD3	1
11351	PARD3B	3.035832e-01
11352	PARD6A	1
11353	PARD6B	1
11354	PARD6G	1
11355	PARK2	1.738559e-01
11356	PARK7	1
11357	PARL	1
11358	PARM1	1
11359	PARN	1
11360	PARP1	1
11361	PARP10	1
11362	PARP11	1
11363	PARP12	1
11364	PARP14	3.639511e-01
11365	PARP15	1
11366	PARP16	5.431221e-02
11367	PARP2	1
11368	PARP3	1
11369	PARP4	3.341616e-01
11370	PARP6	1
11371	PARP8	1
11372	PARP9	1
11373	PARS2	1
11374	PARVA	1
11375	PARVB	9.934865e-02
11376	PARVG	1
11377	PASD1	1
11378	PASK	3.603773e-01
11379	PATE1	1
11380	PATE2	2.373780e-02
11381	PATL1	1
11382	PATZ1	1
11383	PAWR	1
11384	PAX1	9.064570e-02
11385	PAX2	1
11386	PAX3	1
11387	PAX4	1
11388	PAX5	9.180408e-02
11389	PAX6	1
11390	PAX7	1
11391	PAX8	1
11392	PAX9	1
11393	PAXIP1	1.379484e-01
11394	PBK	1
11395	PBLD	1
11396	PBOV1	1
11397	PBRM1	1
11398	PBX1	9.658303e-02
11399	PBX2	8.225096e-02
11400	PBX3	1
11401	PBX4	8.897508e-04
11402	PBXIP1	8.653645e-02
11403	PC	1
11404	PCBD1	1
11405	PCBD2	1
11406	PCBP1	1
11407	PCBP2	1
11408	PCBP3	1
11409	PCBP4	1
11410	PCCA	1
11411	PCCB	1
11412	PCDH1	1
11413	PCDH10	1
11414	PCDH11X	1
11415	PCDH11Y	1.080350e-01
11416	PCDH12	1
11417	PCDH15	1
11418	PCDH17	1.039386e-01
11419	PCDH18	8.534938e-02
In gene PCDH19 the following bins exceed PROBCAP:
    PRAD-CH-5772	categ 6	N = 3390    n = 1	mu =   3.94e-07
11420	PCDH19	4.321707e-02
11421	PCDH20	1
11422	PCDH7	1
11423	PCDH8	1
11424	PCDH9	1
Done

Running MutSig 2:
Scatter job 126: processing genes 11335 - 11424
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PAPLN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.519152e-02	ci left: 6.986761e-01	ci right 7.166028e-01	k: 7077	n:10000
KS ci ratio: 2.437784e-02	ci left: 7.121969e-01	ci right 7.298742e-01	k: 7211	n:10000
PAPLN   10000 perm   2 sec   (6267 perm/sec)   p_kst 7.211000e-01   p_cons 7.077000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000126/PAPLN.2_3856_10000_0.7211_0.7077_1.png
                gene_name: PAPLN
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 20 percent done.
PAPPA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.201653e-02	ci left: 5.901194e-01	ci right 6.094224e-01	k: 5998	n:10000
Cons ci ratio: 5.785981e-02	ci left: 3.054047e-01	ci right 3.237035e-01	k: 3145	n:10000
KS ci ratio: 2.695714e-02	ci left: 6.696478e-01	ci right 6.880479e-01	k: 6789	n:10000
PAPPA2   10000 perm   2 sec   (5742 perm/sec)   p_kst 6.789000e-01   p_cons 3.145000e-01   p_joint 5.998000e-01

Outputting figure to mutsig2_images.part000000000126/PAPPA2.2_5517_10000_0.6789_0.3145_0.5998.png
                gene_name: PAPPA2
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 40 percent done.
PBX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.619696e-02	ci left: 5.298707e-01	ci right 5.495061e-01	k: 5397	n:10000
Cons ci ratio: 1.156144e-01	ci left: 9.710875e-02	ci right 1.091236e-01	k: 1030	n:10000
KS ci ratio: 1.675881e-02	ci left: 8.382657e-01	ci right 8.525325e-01	k: 8455	n:10000
PBX4   10000 perm   1 sec   (6760 perm/sec)   p_kst 8.455000e-01   p_cons 1.030000e-01   p_joint 5.397000e-01

Joint ci ratio: 2.849796e-02	ci left: 4.791506e-01	ci right 4.930534e-01	k: 9722	n:20000
Cons ci ratio: 8.336270e-02	ci left: 9.538497e-02	ci right 1.037319e-01	k: 1990	n:20000
KS ci ratio: 1.174967e-02	ci left: 8.426448e-01	ci right 8.526539e-01	k: 16954	n:20000
PBX4   20000 perm   3 sec   (6414 perm/sec)   p_kst 8.477000e-01   p_cons 9.950000e-02   p_joint 4.861000e-01

Outputting figure to mutsig2_images.part000000000126/PBX4.2_1157_20000_0.8477_0.0995_0.4861.png
                gene_name: PBX4
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.100 
      ci_cons_bounds_left: 0.095 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.49 

Current progress: 60 percent done.
PCDH17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.210680e-02	ci left: 7.501892e-01	ci right 7.670598e-01	k: 7587	n:10000
Cons ci ratio: 7.904075e-02	ci left: 1.895391e-01	ci right 2.052376e-01	k: 1973	n:10000
KS ci ratio: 9.326530e-03	ci left: 9.419078e-01	ci right 9.508299e-01	k: 9465	n:10000
PCDH17   10000 perm   2 sec   (6301 perm/sec)   p_kst 9.465000e-01   p_cons 1.973000e-01   p_joint 7.587000e-01

Outputting figure to mutsig2_images.part000000000126/PCDH17.2_3496_10000_0.9465_0.1973_0.7587.png
                gene_name: PCDH17
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 80 percent done.
PCDH19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.313571e-02	ci left: 8.930299e-01	ci right 9.049365e-01	k: 8991	n:10000
KS ci ratio: 1.758489e-02	ci left: 8.250345e-01	ci right 8.397713e-01	k: 8325	n:10000
PCDH19   10000 perm   2 sec   (6365 perm/sec)   p_kst 8.325000e-01   p_cons 8.991000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000126/PCDH19.2_3471_10000_0.8325_0.8991_1.png
                gene_name: PCDH19
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000126
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 126 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1655>
Subject: Job 9877806: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1655>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000127> was used as the working directory.
Started at Fri Oct  5 22:50:41 2012
Results reported at Fri Oct  5 22:53:15 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000127.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000127.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 127  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000127.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    163.22 sec.
    Max Memory :      2383 MB
    Max Swap   :      4705 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
127
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 127
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 127: processing genes 11425 - 11515
Calculating significance of each gene.
Using projection method.
11425	PCDHA1	3.672331e-01
11426	PCDHA10	5.382151e-02
11427	PCDHA11	1
11428	PCDHA12	3.577071e-01
11429	PCDHA13	1.134636e-02
11430	PCDHA2	3.811131e-01
11431	PCDHA3	5.591911e-02
11432	PCDHA4	1
11433	PCDHA5	2.907985e-01
11434	PCDHA6	8.736839e-03
11435	PCDHA7	2.572497e-01
11436	PCDHA8	1
11437	PCDHA9	1
11438	PCDHAC1	1.304267e-01
11439	PCDHAC2	1
11440	PCDHB1	1
11441	PCDHB10	1
11442	PCDHB11	1
11443	PCDHB12	4.538042e-02
11444	PCDHB13	1
In gene PCDHB14 the following bins exceed PROBCAP:
    PRAD-EJ-5502	categ 6	N = 2401    n = 1	mu =   6.71e-08
11445	PCDHB14	8.247833e-04
11446	PCDHB15	1
11447	PCDHB16	1
11448	PCDHB2	2.653087e-01
11449	PCDHB3	1
11450	PCDHB4	1
11451	PCDHB5	3.905609e-02
11452	PCDHB6	1.281317e-01
11453	PCDHB7	1.051969e-02
11454	PCDHB8	1
11455	PCDHB9	2.595936e-01
11456	PCDHGA1	1
11457	PCDHGA10	3.411443e-01
11458	PCDHGA11	1
11459	PCDHGA12	1
11460	PCDHGA2	6.498434e-03
11461	PCDHGA3	1.531370e-01
11462	PCDHGA4	1
11463	PCDHGA5	1
11464	PCDHGA6	3.211299e-02
11465	PCDHGA7	1
11466	PCDHGA8	1
11467	PCDHGA9	1
11468	PCDHGB1	1
11469	PCDHGB2	1.928983e-01
11470	PCDHGB3	1.685147e-02
11471	PCDHGB4	1
11472	PCDHGB5	1
11473	PCDHGB6	1
11474	PCDHGB7	1.116684e-02
11475	PCDHGC3	1
11476	PCDHGC4	1
11477	PCDHGC5	1.660904e-01
11478	PCDP1	1
11479	PCF11	1
11480	PCGF1	1
11481	PCGF2	1
11482	PCGF3	1
11483	PCGF5	1
11484	PCGF6	1
11485	PCID2	1
11486	PCIF1	1
11487	PCK1	1
11488	PCK2	4.500956e-02
11489	PCLO	3.496475e-01
11490	PCM1	1
11491	PCMT1	1
11492	PCMTD1	7.047159e-02
11493	PCMTD2	1
11494	PCNA	1
11495	PCNP	1
11496	PCNT	1
11497	PCNX	1
11498	PCNXL2	1
11499	PCNXL3	1
11500	PCOLCE	1
11501	PCOLCE2	1
11502	PCOTH	1
11503	PCP2	1
11504	PCP4	1
11505	PCP4L1	1
11506	PCSK1	1
11507	PCSK2	2.227209e-01
11508	PCSK4	1
11509	PCSK5	1
11510	PCSK6	1
11511	PCSK7	1
11512	PCSK9	1
11513	PCTP	1
11514	PCYOX1	1
11515	PCYOX1L	1
Done

Running MutSig 2:
Scatter job 127: processing genes 11425 - 11515
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PCDHA13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.690770e-02	ci left: 6.704536e-01	ci right 6.888416e-01	k: 6797	n:10000
KS ci ratio: 2.916180e-02	ci left: 6.342228e-01	ci right 6.530934e-01	k: 6437	n:10000
PCDHA13   10000 perm   2 sec   (5365 perm/sec)   p_kst 6.437000e-01   p_cons 6.797000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000127/PCDHA13.3_2899_10000_0.6437_0.6797_1.png
                gene_name: PCDHA13
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 8 percent done.
PCDHA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.278897e-02	ci left: 5.785796e-01	ci right 5.979689e-01	k: 5883	n:10000
Cons ci ratio: 2.321706e-02	ci left: 7.315870e-01	ci right 7.488729e-01	k: 7403	n:10000
KS ci ratio: 4.658079e-02	ci left: 4.048206e-01	ci right 4.242292e-01	k: 4145	n:10000
PCDHA6   10000 perm   2 sec   (5264 perm/sec)   p_kst 4.145000e-01   p_cons 7.403000e-01   p_joint 5.883000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHA6.3_2885_10000_0.4145_0.7403_0.5883.png
                gene_name: PCDHA6
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 15 percent done.
PCDHB14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.077830e-02	ci left: 1.828443e-01	ci right 1.983364e-01	k: 1905	n:10000
Cons ci ratio: 3.629176e-02	ci left: 5.285691e-01	ci right 5.482085e-01	k: 5384	n:10000
KS ci ratio: 9.743651e-02	ci left: 1.324713e-01	ci right 1.461396e-01	k: 1392	n:10000
PCDHB14   10000 perm   2 sec   (4829 perm/sec)   p_kst 1.392000e-01   p_cons 5.384000e-01   p_joint 1.905000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB14.3_2401_10000_0.1392_0.5384_0.1905.png
                gene_name: PCDHB14
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 23 percent done.
PCDHGA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.183970e-02	ci left: 1.469770e-01	ci right 1.612251e-01	k: 1540	n:10000
Cons ci ratio: 1.308071e-01	ci left: 7.698582e-02	ci right 8.785890e-02	k: 823	n:10000
KS ci ratio: 5.062909e-02	ci left: 3.652005e-01	ci right 3.842725e-01	k: 3747	n:10000
PCDHGA2   10000 perm   2 sec   (5551 perm/sec)   p_kst 3.747000e-01   p_cons 8.230000e-02   p_joint 1.540000e-01

Joint ci ratio: 9.339492e-02	ci left: 7.715702e-02	ci right 8.476534e-02	k: 1618	n:20000
Cons ci ratio: 9.298930e-02	ci left: 7.779311e-02	ci right 8.542905e-02	k: 1631	n:20000
KS ci ratio: 3.559085e-02	ci left: 3.707749e-01	ci right 3.842607e-01	k: 7550	n:20000
PCDHGA2   20000 perm   4 sec   (5041 perm/sec)   p_kst 3.775000e-01   p_cons 8.155000e-02   p_joint 8.090000e-02

Outputting figure to mutsig2_images.part000000000127/PCDHGA2.3_2861_20000_0.3775_0.08155_0.0809.png
                gene_name: PCDHGA2
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.082 
      ci_cons_bounds_left: 0.078 
     ci_cons_bounds_right: 0.085 
                  p_joint: 0.081 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.085 

Current progress: 31 percent done.
PCDHA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.617132e-02	ci left: 8.475379e-01	ci right 8.614549e-01	k: 8546	n:10000
Cons ci ratio: 2.889536e-02	ci left: 6.384467e-01	ci right 6.572671e-01	k: 6479	n:10000
KS ci ratio: 1.271941e-02	ci left: 8.988792e-01	ci right 9.104838e-01	k: 9048	n:10000
PCDHA10   10000 perm   2 sec   (5826 perm/sec)   p_kst 9.048000e-01   p_cons 6.479000e-01   p_joint 8.546000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHA10.2_3008_10000_0.9048_0.6479_0.8546.png
                gene_name: PCDHA10
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 38 percent done.
PCDHA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.454578e-02	ci left: 5.530107e-01	ci right 5.725527e-01	k: 5628	n:10000
Cons ci ratio: 1.944755e-02	ci left: 7.945595e-01	ci right 8.102639e-01	k: 8025	n:10000
KS ci ratio: 5.487243e-02	ci left: 3.285285e-01	ci right 3.471661e-01	k: 3378	n:10000
PCDHA3   10000 perm   2 sec   (5602 perm/sec)   p_kst 3.378000e-01   p_cons 8.025000e-01   p_joint 5.628000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHA3.2_2948_10000_0.3378_0.8025_0.5628.png
                gene_name: PCDHA3
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 46 percent done.
PCDHB12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.293946e-02	ci left: 7.362356e-01	ci right 7.534215e-01	k: 7449	n:10000
KS ci ratio: 8.634954e-03	ci left: 9.495015e-01	ci right 9.578316e-01	k: 9538	n:10000
PCDHB12   10000 perm   2 sec   (6168 perm/sec)   p_kst 9.538000e-01   p_cons 7.449000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000127/PCDHB12.2_2392_10000_0.9538_0.7449_1.png
                gene_name: PCDHB12
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
PCDHB5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.862176e-02	ci left: 8.081622e-01	ci right 8.234533e-01	k: 8159	n:10000
Cons ci ratio: 3.709500e-02	ci left: 5.176582e-01	ci right 5.373258e-01	k: 5275	n:10000
KS ci ratio: 2.119438e-02	ci left: 7.654710e-01	ci right 7.819693e-01	k: 7738	n:10000
PCDHB5   10000 perm   2 sec   (5993 perm/sec)   p_kst 7.738000e-01   p_cons 5.275000e-01   p_joint 8.159000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB5.2_2392_10000_0.7738_0.5275_0.8159.png
                gene_name: PCDHB5
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 62 percent done.
PCDHB7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.797060e-03	ci left: 9.887288e-01	ci right 9.925772e-01	k: 9908	n:10000
Cons ci ratio: 3.107787e-02	ci left: 6.043762e-01	ci right 6.235573e-01	k: 6140	n:10000
KS ci ratio: 5.437344e-02	ci left: 3.326001e-01	ci right 3.512920e-01	k: 3419	n:10000
PCDHB7   10000 perm   2 sec   (5958 perm/sec)   p_kst 3.419000e-01   p_cons 6.140000e-01   p_joint 9.908000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB7.2_2386_10000_0.3419_0.614_0.9908.png
                gene_name: PCDHB7
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 69 percent done.
PCDHGA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.913424e-02	ci left: 7.997350e-01	ci right 8.152855e-01	k: 8076	n:10000
Cons ci ratio: 4.458556e-02	ci left: 4.261509e-01	ci right 4.456865e-01	k: 4359	n:10000
KS ci ratio: 2.377877e-02	ci left: 7.221923e-01	ci right 7.396730e-01	k: 7310	n:10000
PCDHGA6   10000 perm   2 sec   (5813 perm/sec)   p_kst 7.310000e-01   p_cons 4.359000e-01   p_joint 8.076000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGA6.2_2846_10000_0.731_0.4359_0.8076.png
                gene_name: PCDHGA6
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 77 percent done.
PCDHGB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.481289e-02	ci left: 4.236581e-01	ci right 4.431807e-01	k: 4334	n:10000
Cons ci ratio: 3.318984e-02	ci left: 5.726613e-01	ci right 5.920907e-01	k: 5824	n:10000
KS ci ratio: 1.044753e-01	ci left: 1.169164e-01	ci right 1.299039e-01	k: 1233	n:10000
PCDHGB3   10000 perm   2 sec   (5857 perm/sec)   p_kst 1.233000e-01   p_cons 5.824000e-01   p_joint 4.334000e-01

Joint ci ratio: 2.611423e-03	ci left: 9.898603e-01	ci right 9.924939e-01	k: 19825	n:20000
Cons ci ratio: 2.313162e-02	ci left: 5.825947e-01	ci right 5.962793e-01	k: 11789	n:20000
KS ci ratio: 7.285306e-02	ci left: 1.218242e-01	ci right 1.310847e-01	k: 2528	n:20000
PCDHGB3   20000 perm   4 sec   (5218 perm/sec)   p_kst 1.264000e-01   p_cons 5.894500e-01   p_joint 9.912500e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGB3.2_2834_20000_0.1264_0.58945_0.99125.png
                gene_name: PCDHGB3
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 85 percent done.
PCDHGB7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.191022e-02	ci left: 1.467809e-01	ci right 1.610214e-01	k: 1538	n:10000
Cons ci ratio: 1.346742e-01	ci left: 7.281740e-02	ci right 8.342992e-02	k: 780	n:10000
KS ci ratio: 5.542886e-02	ci left: 3.240605e-01	ci right 3.426367e-01	k: 3333	n:10000
PCDHGB7   10000 perm   2 sec   (5985 perm/sec)   p_kst 3.333000e-01   p_cons 7.800000e-02   p_joint 1.538000e-01

Joint ci ratio: 9.393256e-02	ci left: 7.632531e-02	ci right 8.389730e-02	k: 1601	n:20000
Cons ci ratio: 9.713258e-02	ci left: 7.163100e-02	ci right 7.899304e-02	k: 1505	n:20000
KS ci ratio: 3.899656e-02	ci left: 3.290550e-01	ci right 3.421928e-01	k: 6712	n:20000
PCDHGB7   20000 perm   4 sec   (5289 perm/sec)   p_kst 3.356000e-01   p_cons 7.525000e-02   p_joint 8.005000e-02

Outputting figure to mutsig2_images.part000000000127/PCDHGB7.2_2818_20000_0.3356_0.07525_0.08005.png
                gene_name: PCDHGB7
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.084 

Current progress: 92 percent done.
PCLO
Processing conservation and coverage...
64% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.791418e-02	ci left: 6.541423e-01	ci right 6.727624e-01	k: 6635	n:10000
KS ci ratio: 1.095686e-02	ci left: 9.223452e-01	ci right 9.326041e-01	k: 9276	n:10000
PCLO   10000 perm   3 sec   (3001 perm/sec)   p_kst 9.276000e-01   p_cons 6.635000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000127/PCLO.2_15546_10000_0.9276_0.6635_1.png
                gene_name: PCLO
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000127
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 127 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1727>
Subject: Job 9877841: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1727>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000128> was used as the working directory.
Started at Fri Oct  5 22:50:41 2012
Results reported at Fri Oct  5 23:01:31 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000128.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000128.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 128  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000128.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    637.03 sec.
    Max Memory :      2064 MB
    Max Swap   :      4687 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
128
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 128
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 128: processing genes 11516 - 11606
Calculating significance of each gene.
Using projection method.
11516	PCYT1A	1
11517	PCYT1B	1
11518	PCYT2	1
11519	PDAP1	1
11520	PDC	1
11521	PDCD1	4.668910e-03
11522	PDCD10	1
11523	PDCD11	5.032756e-01
11524	PDCD1LG2	1
11525	PDCD2	1
11526	PDCD2L	1
11527	PDCD4	1
11528	PDCD5	1
11529	PDCD6	1
11530	PDCD6IP	1
11531	PDCD7	1
11532	PDCL	1
11533	PDCL2	1
11534	PDCL3	1
11535	PDDC1	1
11536	PDE10A	1
11537	PDE11A	1
11538	PDE12	1
11539	PDE1A	1
11540	PDE1B	1
11541	PDE1C	2.004050e-01
11542	PDE2A	3.274037e-02
11543	PDE3A	1
11544	PDE3B	1
11545	PDE4A	1
11546	PDE4B	1
11547	PDE4C	1
11548	PDE4D	1
11549	PDE4DIP	1.065695e-04
11550	PDE5A	1
11551	PDE6A	1
11552	PDE6B	1
11553	PDE6C	1
11554	PDE6D	1
11555	PDE6G	1
11556	PDE6H	1
11557	PDE7A	1
11558	PDE7B	1
11559	PDE8A	1.456336e-01
11560	PDE8B	1.430542e-01
11561	PDE9A	1
11562	PDGFA	1
11563	PDGFB	1
11564	PDGFC	1
11565	PDGFD	1
11566	PDGFRA	1.396627e-01
11567	PDGFRB	1
11568	PDGFRL	1
11569	PDHA1	1
11570	PDHA2	1
11571	PDHB	1
11572	PDHX	1
11573	PDIA2	1
11574	PDIA3	1
11575	PDIA4	1
11576	PDIA5	1
11577	PDIA6	1.400408e-01
11578	PDIK1L	1
11579	PDILT	1
11580	PDK1	1.085213e-01
11581	PDK2	1
11582	PDK3	1
11583	PDK4	1
11584	PDLIM1	1
11585	PDLIM2	1
11586	PDLIM3	1
11587	PDLIM4	1
11588	PDLIM5	1
11589	PDLIM7	1
11590	PDP1	1
11591	PDP2	1.586628e-01
11592	PDPK1	1
11593	PDPN	1
11594	PDPR	1
11595	PDRG1	1
11596	PDS5A	1
11597	PDS5B	2.291062e-01
11598	PDSS1	1
11599	PDSS2	1
11600	PDX1	1
11601	PDXDC1	1.708407e-01
11602	PDXK	1
11603	PDXP	1
11604	PDYN	3.004257e-02
11605	PDZD11	1
11606	PDZD2	4.857619e-01
Done

Running MutSig 2:
Scatter job 128: processing genes 11516 - 11606
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PDE4DIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.073636e-01	ci left: 3.091404e-02	ci right 3.816041e-02	k: 344	n:10000
Cons ci ratio: 1.707822e-02	ci left: 8.331748e-01	ci right 8.476263e-01	k: 8405	n:10000
KS ci ratio: 4.184154e-01	ci left: 6.884481e-03	ci right 1.061018e-02	k: 86	n:10000
PDE4DIP   10000 perm   2 sec   (4061 perm/sec)   p_kst 8.600000e-03   p_cons 8.405000e-01   p_joint 3.440000e-02

Joint ci ratio: 1.845928e-01	ci left: 2.001183e-02	ci right 2.412875e-02	k: 440	n:20000
Cons ci ratio: 1.266715e-02	ci left: 8.219384e-01	ci right 8.324663e-01	k: 16545	n:20000
KS ci ratio: 3.020622e-01	ci left: 7.089521e-03	ci right 9.656492e-03	k: 166	n:20000
PDE4DIP   20000 perm   7 sec   (2734 perm/sec)   p_kst 8.300000e-03   p_cons 8.272500e-01   p_joint 2.200000e-02

Joint ci ratio: 1.127453e-01	ci left: 3.654551e-02	ci right 4.094439e-02	k: 1161	n:30000
Cons ci ratio: 1.039136e-02	ci left: 8.215609e-01	ci right 8.301759e-01	k: 24777	n:30000
KS ci ratio: 2.425193e-01	ci left: 7.586271e-03	ci right 9.710531e-03	k: 258	n:30000
PDE4DIP   30000 perm   10 sec   (2949 perm/sec)   p_kst 8.600000e-03   p_cons 8.259000e-01   p_joint 3.870000e-02

Joint ci ratio: 1.249219e-01	ci left: 2.252228e-02	ci right 2.554736e-02	k: 960	n:40000
Cons ci ratio: 8.706620e-03	ci left: 8.315275e-01	ci right 8.388238e-01	k: 33408	n:40000
KS ci ratio: 2.129508e-01	ci left: 7.505266e-03	ci right 9.317188e-03	k: 335	n:40000
PDE4DIP   40000 perm   13 sec   (3052 perm/sec)   p_kst 8.375000e-03   p_cons 8.352000e-01   p_joint 2.400000e-02

Joint ci ratio: 1.166133e-01	ci left: 2.080981e-02	ci right 2.340609e-02	k: 1104	n:50000
Cons ci ratio: 7.814540e-03	ci left: 8.309511e-01	ci right 8.374900e-01	k: 41712	n:50000
KS ci ratio: 1.923253e-01	ci left: 7.447236e-03	ci right 9.050645e-03	k: 411	n:50000
PDE4DIP   50000 perm   16 sec   (3043 perm/sec)   p_kst 8.220000e-03   p_cons 8.342400e-01   p_joint 2.208000e-02

Joint ci ratio: 1.165110e-01	ci left: 1.743679e-02	ci right 1.961013e-02	k: 1110	n:60000
Cons ci ratio: 7.132956e-03	ci left: 8.312669e-01	ci right 8.372341e-01	k: 50056	n:60000
KS ci ratio: 1.751048e-01	ci left: 7.557702e-03	ci right 9.023790e-03	k: 496	n:60000
PDE4DIP   60000 perm   20 sec   (3029 perm/sec)   p_kst 8.266667e-03   p_cons 8.342667e-01   p_joint 1.850000e-02

Joint ci ratio: 1.128090e-01	ci left: 1.599972e-02	ci right 1.792633e-02	k: 1186	n:70000
Cons ci ratio: 6.579129e-03	ci left: 8.325313e-01	ci right 8.380409e-01	k: 58471	n:70000
KS ci ratio: 1.615316e-01	ci left: 7.668634e-03	ci right 9.029736e-03	k: 583	n:70000
PDE4DIP   70000 perm   23 sec   (3050 perm/sec)   p_kst 8.328571e-03   p_cons 8.353000e-01   p_joint 1.694286e-02

Joint ci ratio: 1.037320e-01	ci left: 1.662701e-02	ci right 1.845822e-02	k: 1402	n:80000
Cons ci ratio: 6.149169e-03	ci left: 8.329378e-01	ci right 8.380879e-01	k: 66842	n:80000
KS ci ratio: 1.514919e-01	ci left: 7.670918e-03	ci right 8.940127e-03	k: 663	n:80000
PDE4DIP   80000 perm   26 sec   (3066 perm/sec)   p_kst 8.287500e-03   p_cons 8.355250e-01   p_joint 1.752500e-02

Joint ci ratio: 1.010190e-01	ci left: 1.562363e-02	ci right 1.729664e-02	k: 1480	n:90000
Cons ci ratio: 5.797543e-03	ci left: 8.330839e-01	ci right 8.379389e-01	k: 75197	n:90000
KS ci ratio: 1.414971e-01	ci left: 7.856954e-03	ci right 9.063938e-03	k: 760	n:90000
PDE4DIP   90000 perm   29 sec   (3066 perm/sec)   p_kst 8.444444e-03   p_cons 8.355222e-01   p_joint 1.644444e-02

Joint ci ratio: 9.733609e-02	ci left: 1.518257e-02	ci right 1.674569e-02	k: 1595	n:100000
Cons ci ratio: 5.670885e-03	ci left: 8.245808e-01	ci right 8.292802e-01	k: 82694	n:100000
KS ci ratio: 1.355811e-01	ci left: 7.727659e-03	ci right 8.861139e-03	k: 828	n:100000
PDE4DIP   100000 perm   33 sec   (3061 perm/sec)   p_kst 8.280000e-03   p_cons 8.269400e-01   p_joint 1.595000e-02

Joint ci ratio: 8.526023e-02	ci left: 1.805004e-02	ci right 1.966638e-02	k: 2073	n:110000
Cons ci ratio: 5.408243e-03	ci left: 8.246237e-01	ci right 8.291045e-01	k: 90956	n:110000
KS ci ratio: 1.293359e-01	ci left: 7.745909e-03	ci right 8.825712e-03	k: 910	n:110000
PDE4DIP   110000 perm   36 sec   (3054 perm/sec)   p_kst 8.272727e-03   p_cons 8.268727e-01   p_joint 1.884545e-02

Joint ci ratio: 8.501619e-02	ci left: 1.666770e-02	ci right 1.815575e-02	k: 2088	n:120000
Cons ci ratio: 5.175694e-03	ci left: 8.248478e-01	ci right 8.291363e-01	k: 99240	n:120000
KS ci ratio: 1.233810e-01	ci left: 7.826737e-03	ci right 8.863901e-03	k: 1000	n:120000
PDE4DIP   120000 perm   39 sec   (3043 perm/sec)   p_kst 8.333333e-03   p_cons 8.270000e-01   p_joint 1.740000e-02

Joint ci ratio: 8.276856e-02	ci left: 1.625902e-02	ci right 1.767034e-02	k: 2204	n:130000
Cons ci ratio: 4.969702e-03	ci left: 8.251028e-01	ci right 8.292211e-01	k: 107532	n:130000
KS ci ratio: 1.191749e-01	ci left: 7.761710e-03	ci right 8.752720e-03	k: 1072	n:130000
PDE4DIP   130000 perm   43 sec   (3028 perm/sec)   p_kst 8.246154e-03   p_cons 8.271692e-01   p_joint 1.695385e-02

Joint ci ratio: 7.750739e-02	ci left: 1.724693e-02	ci right 1.864456e-02	k: 2511	n:140000
Cons ci ratio: 4.793073e-03	ci left: 8.249294e-01	ci right 8.288999e-01	k: 115769	n:140000
KS ci ratio: 1.150175e-01	ci left: 7.755060e-03	ci right 8.708333e-03	k: 1151	n:140000
PDE4DIP   140000 perm   46 sec   (3013 perm/sec)   p_kst 8.221429e-03   p_cons 8.269214e-01   p_joint 1.793571e-02

Joint ci ratio: 6.947946e-02	ci left: 2.005751e-02	ci right 2.150777e-02	k: 3116	n:150000
Cons ci ratio: 4.483366e-03	ci left: 8.340896e-01	ci right 8.378441e-01	k: 125396	n:150000
KS ci ratio: 1.111759e-01	ci left: 7.762783e-03	ci right 8.683045e-03	k: 1232	n:150000
PDE4DIP   150000 perm   50 sec   (2994 perm/sec)   p_kst 8.213333e-03   p_cons 8.359733e-01   p_joint 2.077333e-02

Joint ci ratio: 6.959387e-02	ci left: 1.876663e-02	ci right 2.012587e-02	k: 3110	n:160000
Cons ci ratio: 4.336619e-03	ci left: 8.344276e-01	ci right 8.380602e-01	k: 133800	n:160000
KS ci ratio: 1.071620e-01	ci left: 7.849088e-03	ci right 8.743867e-03	k: 1326	n:160000
PDE4DIP   160000 perm   54 sec   (2973 perm/sec)   p_kst 8.287500e-03   p_cons 8.362500e-01   p_joint 1.943750e-02

Joint ci ratio: 6.762495e-02	ci left: 1.872648e-02	ci right 2.004293e-02	k: 3294	n:170000
Cons ci ratio: 4.208808e-03	ci left: 8.343730e-01	ci right 8.378979e-01	k: 142144	n:170000
KS ci ratio: 1.039973e-01	ci left: 7.856995e-03	ci right 8.724605e-03	k: 1408	n:170000
PDE4DIP   170000 perm   58 sec   (2950 perm/sec)   p_kst 8.282353e-03   p_cons 8.361412e-01   p_joint 1.937647e-02

Joint ci ratio: 6.391970e-02	ci left: 1.981205e-02	ci right 2.112568e-02	k: 3683	n:180000
Cons ci ratio: 4.089264e-03	ci left: 8.344877e-01	ci right 8.379126e-01	k: 150517	n:180000
KS ci ratio: 1.011658e-01	ci left: 7.853536e-03	ci right 8.695749e-03	k: 1488	n:180000
PDE4DIP   180000 perm   61 sec   (2927 perm/sec)   p_kst 8.266667e-03   p_cons 8.362056e-01   p_joint 2.046111e-02

Joint ci ratio: 6.407912e-02	ci left: 1.869646e-02	ci right 1.993932e-02	k: 3669	n:190000
Cons ci ratio: 3.979665e-03	ci left: 8.345704e-01	ci right 8.379035e-01	k: 158886	n:190000
KS ci ratio: 9.861708e-02	ci left: 7.840460e-03	ci right 8.658861e-03	k: 1566	n:190000
PDE4DIP   190000 perm   66 sec   (2900 perm/sec)   p_kst 8.242105e-03   p_cons 8.362421e-01   p_joint 1.931053e-02

Outputting figure to mutsig2_images.part000000000128/PDE4DIP.6_8813_190000_0.0082421_0.83624_0.019311.png
                gene_name: PDE4DIP
               theta_stop: 0.099 
                    nperm: 190000 
                     p_ks: 0.0082 
        ci_ks_bounds_left: 0.0078 
       ci_ks_bounds_right: 0.0087 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.020 

Current progress: 33 percent done.
PDCD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.369981e-01	ci left: 3.885975e-03	ci right 6.813584e-03	k: 52	n:10000
Cons ci ratio: 2.639009e-02	ci left: 6.789163e-01	ci right 6.971741e-01	k: 6881	n:10000
KS ci ratio: 1.011330e+00	ci left: 7.655977e-04	ci right 2.347848e-03	k: 14	n:10000
PDCD1   10000 perm   1 sec   (7617 perm/sec)   p_kst 1.400000e-03   p_cons 6.881000e-01   p_joint 5.200000e-03

Joint ci ratio: 5.230852e-01	ci left: 2.072328e-03	ci right 3.578018e-03	k: 55	n:20000
Cons ci ratio: 1.863077e-02	ci left: 6.823314e-01	ci right 6.952137e-01	k: 13776	n:20000
KS ci ratio: 7.682562e-01	ci left: 8.090923e-04	ci right 1.844697e-03	k: 25	n:20000
PDCD1   20000 perm   3 sec   (6708 perm/sec)   p_kst 1.250000e-03   p_cons 6.888000e-01   p_joint 2.750000e-03

Joint ci ratio: 4.015396e-01	ci left: 2.532772e-03	ci right 3.833062e-03	k: 94	n:30000
Cons ci ratio: 1.432245e-02	ci left: 7.088828e-01	ci right 7.191424e-01	k: 21421	n:30000
KS ci ratio: 6.622033e-01	ci left: 7.849900e-04	ci right 1.583363e-03	k: 34	n:30000
PDCD1   30000 perm   5 sec   (6334 perm/sec)   p_kst 1.133333e-03   p_cons 7.140333e-01   p_joint 3.133333e-03

Joint ci ratio: 3.017950e-01	ci left: 3.566836e-03	ci right 4.856777e-03	k: 167	n:40000
Cons ci ratio: 1.239859e-02	ci left: 7.097446e-01	ci right 7.186243e-01	k: 28568	n:40000
KS ci ratio: 5.540182e-01	ci left: 9.063949e-04	ci right 1.619195e-03	k: 49	n:40000
PDCD1   40000 perm   7 sec   (6083 perm/sec)   p_kst 1.225000e-03   p_cons 7.142000e-01   p_joint 4.175000e-03

Joint ci ratio: 2.808903e-01	ci left: 3.335453e-03	ci right 4.443372e-03	k: 193	n:50000
Cons ci ratio: 1.112064e-02	ci left: 7.090729e-01	ci right 7.170223e-01	k: 35653	n:50000
KS ci ratio: 4.935574e-01	ci left: 9.508290e-04	ci right 1.589346e-03	k: 62	n:50000
PDCD1   50000 perm   8 sec   (5899 perm/sec)   p_kst 1.240000e-03   p_cons 7.130600e-01   p_joint 3.860000e-03

Joint ci ratio: 2.781199e-01	ci left: 2.841433e-03	ci right 3.774300e-03	k: 197	n:60000
Cons ci ratio: 1.014163e-02	ci left: 7.098303e-01	ci right 7.170824e-01	k: 42808	n:60000
KS ci ratio: 4.464350e-01	ci left: 9.981151e-04	ci right 1.585169e-03	k: 76	n:60000
PDCD1   60000 perm   10 sec   (5757 perm/sec)   p_kst 1.266667e-03   p_cons 7.134667e-01   p_joint 3.283333e-03

Joint ci ratio: 3.229742e-01	ci left: 1.761396e-03	ci right 2.452347e-03	k: 146	n:70000
Cons ci ratio: 9.391197e-03	ci left: 7.100200e-01	ci right 7.167337e-01	k: 49937	n:70000
KS ci ratio: 4.062121e-01	ci left: 1.059627e-03	ci right 1.611615e-03	k: 92	n:70000
PDCD1   70000 perm   12 sec   (5630 perm/sec)   p_kst 1.314286e-03   p_cons 7.133857e-01   p_joint 2.085714e-03

Joint ci ratio: 2.985739e-01	ci left: 1.829396e-03	ci right 2.482550e-03	k: 171	n:80000
Cons ci ratio: 8.783018e-03	ci left: 7.103154e-01	ci right 7.165941e-01	k: 57077	n:80000
KS ci ratio: 3.878879e-01	ci left: 1.028441e-03	ci right 1.533844e-03	k: 101	n:80000
PDCD1   80000 perm   15 sec   (5511 perm/sec)   p_kst 1.262500e-03   p_cons 7.134625e-01   p_joint 2.137500e-03

Joint ci ratio: 2.782741e-01	ci left: 1.894154e-03	ci right 2.516406e-03	k: 197	n:90000
Cons ci ratio: 8.253408e-03	ci left: 7.118489e-01	ci right 7.177595e-01	k: 64333	n:90000
KS ci ratio: 3.591062e-01	ci left: 1.085358e-03	ci right 1.569925e-03	k: 118	n:90000
PDCD1   90000 perm   17 sec   (5388 perm/sec)   p_kst 1.311111e-03   p_cons 7.148111e-01   p_joint 2.188889e-03

Joint ci ratio: 2.652050e-01	ci left: 1.891119e-03	ci right 2.478354e-03	k: 217	n:100000
Cons ci ratio: 7.828167e-03	ci left: 7.120907e-01	ci right 7.176969e-01	k: 71490	n:100000
KS ci ratio: 3.396793e-01	ci left: 1.104547e-03	ci right 1.565160e-03	k: 132	n:100000
PDCD1   100000 perm   19 sec   (5275 perm/sec)   p_kst 1.320000e-03   p_cons 7.149000e-01   p_joint 2.170000e-03

Joint ci ratio: 2.486384e-01	ci left: 1.974391e-03	ci right 2.543271e-03	k: 247	n:110000
Cons ci ratio: 7.474688e-03	ci left: 7.116293e-01	ci right 7.169775e-01	k: 78574	n:110000
KS ci ratio: 3.242047e-01	ci left: 1.112472e-03	ci right 1.550863e-03	k: 145	n:110000
PDCD1   110000 perm   21 sec   (5158 perm/sec)   p_kst 1.318182e-03   p_cons 7.143091e-01   p_joint 2.245455e-03

Joint ci ratio: 2.512123e-01	ci left: 1.770778e-03	ci right 2.287096e-03	k: 242	n:120000
Cons ci ratio: 7.156339e-03	ci left: 7.117514e-01	ci right 7.168715e-01	k: 85718	n:120000
KS ci ratio: 3.096953e-01	ci left: 1.127158e-03	ci right 1.547536e-03	k: 159	n:120000
PDCD1   120000 perm   24 sec   (5042 perm/sec)   p_kst 1.325000e-03   p_cons 7.143167e-01   p_joint 2.016667e-03

Joint ci ratio: 2.423973e-01	ci left: 1.764463e-03	ci right 2.258173e-03	k: 260	n:130000
Cons ci ratio: 6.867059e-03	ci left: 7.123601e-01	ci right 7.172764e-01	k: 92927	n:130000
KS ci ratio: 2.995715e-01	ci left: 1.118602e-03	ci right 1.519558e-03	k: 170	n:130000
PDCD1   130000 perm   27 sec   (4862 perm/sec)   p_kst 1.307692e-03   p_cons 7.148231e-01   p_joint 2.000000e-03

Joint ci ratio: 2.209694e-01	ci left: 1.995100e-03	ci right 2.497301e-03	k: 313	n:140000
Cons ci ratio: 6.617640e-03	ci left: 7.124269e-01	ci right 7.171642e-01	k: 100072	n:140000
KS ci ratio: 2.911819e-01	ci left: 1.104838e-03	ci right 1.487725e-03	k: 180	n:140000
PDCD1   140000 perm   29 sec   (4782 perm/sec)   p_kst 1.285714e-03   p_cons 7.148000e-01   p_joint 2.235714e-03

Joint ci ratio: 2.242295e-01	ci left: 1.805418e-03	ci right 2.267502e-03	k: 304	n:150000
Cons ci ratio: 6.391577e-03	ci left: 7.126145e-01	ci right 7.171905e-01	k: 107236	n:150000
KS ci ratio: 2.776961e-01	ci left: 1.142630e-03	ci right 1.517073e-03	k: 198	n:150000
PDCD1   150000 perm   32 sec   (4696 perm/sec)   p_kst 1.320000e-03   p_cons 7.149067e-01   p_joint 2.026667e-03

Joint ci ratio: 2.178937e-01	ci left: 1.798851e-03	ci right 2.244503e-03	k: 322	n:160000
Cons ci ratio: 6.193844e-03	ci left: 7.123426e-01	ci right 7.167746e-01	k: 114330	n:160000
KS ci ratio: 2.690474e-01	ci left: 1.146898e-03	ci right 1.509060e-03	k: 211	n:160000
PDCD1   160000 perm   35 sec   (4621 perm/sec)   p_kst 1.318750e-03   p_cons 7.145625e-01   p_joint 2.012500e-03

Joint ci ratio: 2.102211e-01	ci left: 1.826649e-03	ci right 2.261202e-03	k: 346	n:170000
Cons ci ratio: 6.017199e-03	ci left: 7.118453e-01	ci right 7.161474e-01	k: 121380	n:170000
KS ci ratio: 2.577410e-01	ci left: 1.183825e-03	ci right 1.539412e-03	k: 230	n:170000
PDCD1   170000 perm   37 sec   (4558 perm/sec)   p_kst 1.352941e-03   p_cons 7.140000e-01   p_joint 2.035294e-03

Joint ci ratio: 2.690674e-01	ci left: 1.019456e-03	ci right 1.341401e-03	k: 211	n:180000
Cons ci ratio: 5.852838e-03	ci left: 7.115443e-01	ci right 7.157266e-01	k: 128455	n:180000
KS ci ratio: 2.462743e-01	ci left: 1.232568e-03	ci right 1.583805e-03	k: 252	n:180000
PDCD1   180000 perm   40 sec   (4480 perm/sec)   p_kst 1.400000e-03   p_cons 7.136389e-01   p_joint 1.172222e-03

Joint ci ratio: 1.975327e-01	ci left: 1.864130e-03	ci right 2.277614e-03	k: 392	n:190000
Cons ci ratio: 5.697937e-03	ci left: 7.115139e-01	ci right 7.155848e-01	k: 135575	n:190000
KS ci ratio: 2.401817e-01	ci left: 1.231947e-03	ci right 1.573030e-03	k: 265	n:190000
PDCD1   190000 perm   43 sec   (4418 perm/sec)   p_kst 1.394737e-03   p_cons 7.135526e-01   p_joint 2.063158e-03

Joint ci ratio: 1.523334e-01	ci left: 3.048566e-03	ci right 3.555998e-03	k: 659	n:200000
Cons ci ratio: 5.549351e-03	ci left: 7.118837e-01	ci right 7.158501e-01	k: 142774	n:200000
KS ci ratio: 2.324434e-01	ci left: 1.255024e-03	ci right 1.589694e-03	k: 283	n:200000
PDCD1   200000 perm   46 sec   (4362 perm/sec)   p_kst 1.415000e-03   p_cons 7.138700e-01   p_joint 3.295000e-03

Joint ci ratio: 1.477030e-01	ci left: 3.095896e-03	ci right 3.594159e-03	k: 701	n:210000
Cons ci ratio: 5.411807e-03	ci left: 7.122194e-01	ci right 7.160890e-01	k: 149973	n:210000
KS ci ratio: 2.269178e-01	ci left: 1.258093e-03	ci right 1.584490e-03	k: 297	n:210000
PDCD1   210000 perm   49 sec   (4308 perm/sec)   p_kst 1.414286e-03   p_cons 7.141571e-01   p_joint 3.338095e-03

Joint ci ratio: 1.401994e-01	ci left: 3.292598e-03	ci right 3.793350e-03	k: 778	n:220000
Cons ci ratio: 5.286885e-03	ci left: 7.123025e-01	ci right 7.160828e-01	k: 157123	n:220000
KS ci ratio: 2.235696e-01	ci left: 1.239506e-03	ci right 1.555683e-03	k: 306	n:220000
PDCD1   220000 perm   52 sec   (4252 perm/sec)   p_kst 1.390909e-03   p_cons 7.141955e-01   p_joint 3.536364e-03

Joint ci ratio: 1.369835e-01	ci left: 3.304735e-03	ci right 3.794864e-03	k: 815	n:230000
Cons ci ratio: 5.168030e-03	ci left: 7.125535e-01	ci right 7.162498e-01	k: 164313	n:230000
KS ci ratio: 2.166219e-01	ci left: 1.267781e-03	ci right 1.579784e-03	k: 326	n:230000
PDCD1   230000 perm   55 sec   (4200 perm/sec)   p_kst 1.417391e-03   p_cons 7.144043e-01   p_joint 3.543478e-03

Joint ci ratio: 1.381883e-01	ci left: 3.110690e-03	ci right 3.576432e-03	k: 801	n:240000
Cons ci ratio: 5.062733e-03	ci left: 7.123085e-01	ci right 7.159280e-01	k: 171389	n:240000
KS ci ratio: 2.108935e-01	ci left: 1.285943e-03	ci right 1.592966e-03	k: 344	n:240000
PDCD1   240000 perm   58 sec   (4147 perm/sec)   p_kst 1.433333e-03   p_cons 7.141208e-01   p_joint 3.337500e-03

Joint ci ratio: 1.292827e-01	ci left: 3.427057e-03	ci right 3.904564e-03	k: 915	n:250000
Cons ci ratio: 4.959289e-03	ci left: 7.124406e-01	ci right 7.159865e-01	k: 178554	n:250000
KS ci ratio: 2.050319e-01	ci left: 1.310342e-03	ci right 1.613405e-03	k: 364	n:250000
PDCD1   250000 perm   61 sec   (4094 perm/sec)   p_kst 1.456000e-03   p_cons 7.142160e-01   p_joint 3.660000e-03

Joint ci ratio: 1.261516e-01	ci left: 3.466522e-03	ci right 3.936955e-03	k: 961	n:260000
Cons ci ratio: 4.864091e-03	ci left: 7.123820e-01	ci right 7.158594e-01	k: 185672	n:260000
KS ci ratio: 1.998935e-01	ci left: 1.329318e-03	ci right 1.628126e-03	k: 383	n:260000
PDCD1   260000 perm   64 sec   (4042 perm/sec)   p_kst 1.473077e-03   p_cons 7.141231e-01   p_joint 3.696154e-03

Joint ci ratio: 1.177901e-01	ci left: 3.844481e-03	ci right 4.329222e-03	k: 1102	n:270000
Cons ci ratio: 4.772786e-03	ci left: 7.124472e-01	ci right 7.158593e-01	k: 192822	n:270000
KS ci ratio: 1.941603e-01	ci left: 1.361070e-03	ci right 1.657203e-03	k: 406	n:270000
PDCD1   270000 perm   68 sec   (3987 perm/sec)   p_kst 1.503704e-03   p_cons 7.141556e-01   p_joint 4.081481e-03

Joint ci ratio: 1.154071e-01	ci left: 3.866675e-03	ci right 4.343679e-03	k: 1148	n:280000
Cons ci ratio: 4.688158e-03	ci left: 7.123580e-01	ci right 7.157090e-01	k: 199930	n:280000
KS ci ratio: 1.900032e-01	ci left: 1.373656e-03	ci right 1.665390e-03	k: 424	n:280000
PDCD1   280000 perm   71 sec   (3933 perm/sec)   p_kst 1.514286e-03   p_cons 7.140357e-01   p_joint 4.100000e-03

Joint ci ratio: 1.134015e-01	ci left: 3.870676e-03	ci right 4.339320e-03	k: 1189	n:290000
Cons ci ratio: 4.605777e-03	ci left: 7.124620e-01	ci right 7.157544e-01	k: 207092	n:290000
KS ci ratio: 1.869494e-01	ci left: 1.372286e-03	ci right 1.658514e-03	k: 438	n:290000
PDCD1   290000 perm   75 sec   (3881 perm/sec)   p_kst 1.510345e-03   p_cons 7.141103e-01   p_joint 4.100000e-03

Joint ci ratio: 1.116337e-01	ci left: 3.864754e-03	ci right 4.324907e-03	k: 1227	n:300000
Cons ci ratio: 4.528294e-03	ci left: 7.124961e-01	ci right 7.157331e-01	k: 214235	n:300000
KS ci ratio: 1.844465e-01	ci left: 1.364683e-03	ci right 1.645088e-03	k: 450	n:300000
PDCD1   300000 perm   78 sec   (3832 perm/sec)   p_kst 1.500000e-03   p_cons 7.141167e-01   p_joint 4.090000e-03

Joint ci ratio: 1.099461e-01	ci left: 3.859268e-03	ci right 4.311371e-03	k: 1265	n:310000
Cons ci ratio: 4.455509e-03	ci left: 7.124444e-01	ci right 7.156290e-01	k: 221352	n:310000
KS ci ratio: 1.801039e-01	ci left: 1.388393e-03	ci right 1.666221e-03	k: 472	n:310000
PDCD1   310000 perm   82 sec   (3777 perm/sec)   p_kst 1.522581e-03   p_cons 7.140387e-01   p_joint 4.080645e-03

Joint ci ratio: 1.085839e-01	ci left: 3.835930e-03	ci right 4.279375e-03	k: 1297	n:320000
Cons ci ratio: 4.385453e-03	ci left: 7.124590e-01	ci right 7.155934e-01	k: 228489	n:320000
KS ci ratio: 1.776795e-01	ci left: 1.383811e-03	ci right 1.656594e-03	k: 485	n:320000
PDCD1   320000 perm   86 sec   (3732 perm/sec)   p_kst 1.515625e-03   p_cons 7.140281e-01   p_joint 4.053125e-03

Joint ci ratio: 1.071095e-01	ci left: 3.825837e-03	ci right 4.261731e-03	k: 1333	n:330000
Cons ci ratio: 4.317864e-03	ci left: 7.125428e-01	ci right 7.156291e-01	k: 235649	n:330000
KS ci ratio: 1.762368e-01	ci left: 1.365045e-03	ci right 1.631711e-03	k: 493	n:330000
PDCD1   330000 perm   90 sec   (3683 perm/sec)   p_kst 1.493939e-03   p_cons 7.140879e-01   p_joint 4.039394e-03

Joint ci ratio: 1.054235e-01	ci left: 3.836423e-03	ci right 4.266215e-03	k: 1376	n:340000
Cons ci ratio: 4.251100e-03	ci left: 7.128342e-01	ci right 7.158739e-01	k: 242881	n:340000
KS ci ratio: 1.732800e-01	ci left: 1.372710e-03	ci right 1.635903e-03	k: 510	n:340000
PDCD1   340000 perm   93 sec   (3638 perm/sec)   p_kst 1.500000e-03   p_cons 7.143559e-01   p_joint 4.047059e-03

Joint ci ratio: 1.042207e-01	ci left: 3.815840e-03	ci right 4.238151e-03	k: 1408	n:350000
Cons ci ratio: 4.189771e-03	ci left: 7.128717e-01	ci right 7.158676e-01	k: 250030	n:350000
KS ci ratio: 1.712813e-01	ci left: 1.366297e-03	ci right 1.624927e-03	k: 522	n:350000
PDCD1   350000 perm   97 sec   (3596 perm/sec)   p_kst 1.491429e-03   p_cons 7.143714e-01   p_joint 4.022857e-03

Joint ci ratio: 1.029507e-01	ci left: 3.804547e-03	ci right 4.220166e-03	k: 1443	n:360000
Cons ci ratio: 4.131106e-03	ci left: 7.128991e-01	ci right 7.158530e-01	k: 257176	n:360000
KS ci ratio: 1.696681e-01	ci left: 1.354936e-03	ci right 1.608752e-03	k: 532	n:360000
PDCD1   360000 perm   101 sec   (3555 perm/sec)   p_kst 1.477778e-03   p_cons 7.143778e-01   p_joint 4.008333e-03

Joint ci ratio: 1.014851e-01	ci left: 3.812333e-03	ci right 4.222521e-03	k: 1485	n:370000
Cons ci ratio: 4.075971e-03	ci left: 7.128116e-01	ci right 7.157256e-01	k: 264280	n:370000
KS ci ratio: 1.679448e-01	ci left: 1.346789e-03	ci right 1.596258e-03	k: 543	n:370000
PDCD1   370000 perm   105 sec   (3513 perm/sec)   p_kst 1.467568e-03   p_cons 7.142703e-01   p_joint 4.013514e-03

Joint ci ratio: 1.000804e-01	ci left: 3.819750e-03	ci right 4.224713e-03	k: 1527	n:380000
Cons ci ratio: 4.023920e-03	ci left: 7.126341e-01	ci right 7.155100e-01	k: 271348	n:380000
KS ci ratio: 1.656761e-01	ci left: 1.349173e-03	ci right 1.595371e-03	k: 558	n:380000
PDCD1   380000 perm   110 sec   (3469 perm/sec)   p_kst 1.468421e-03   p_cons 7.140737e-01   p_joint 4.018421e-03

Joint ci ratio: 9.920939e-02	ci left: 3.789310e-03	ci right 4.187346e-03	k: 1554	n:390000
Cons ci ratio: 3.971990e-03	ci left: 7.126534e-01	ci right 7.154922e-01	k: 278489	n:390000
KS ci ratio: 1.643595e-01	ci left: 1.336702e-03	ci right 1.578494e-03	k: 567	n:390000
PDCD1   390000 perm   114 sec   (3430 perm/sec)   p_kst 1.453846e-03   p_cons 7.140744e-01   p_joint 3.984615e-03

Joint ci ratio: 9.768117e-02	ci left: 3.814064e-03	ci right 4.208175e-03	k: 1603	n:400000
Cons ci ratio: 3.921467e-03	ci left: 7.127295e-01	ci right 7.155324e-01	k: 285653	n:400000
KS ci ratio: 1.615390e-01	ci left: 1.351247e-03	ci right 1.591068e-03	k: 587	n:400000
PDCD1   400000 perm   118 sec   (3394 perm/sec)   p_kst 1.467500e-03   p_cons 7.141325e-01   p_joint 4.007500e-03

Joint ci ratio: 9.654451e-02	ci left: 3.811469e-03	ci right 4.200470e-03	k: 1641	n:410000
Cons ci ratio: 3.873287e-03	ci left: 7.127533e-01	ci right 7.155217e-01	k: 292797	n:410000
KS ci ratio: 1.601836e-01	ci left: 1.341697e-03	ci right 1.577633e-03	k: 597	n:410000
PDCD1   410000 perm   122 sec   (3357 perm/sec)   p_kst 1.456098e-03   p_cons 7.141390e-01   p_joint 4.002439e-03

Joint ci ratio: 9.416098e-02	ci left: 3.915961e-03	ci right 4.305215e-03	k: 1725	n:420000
Cons ci ratio: 3.826528e-03	ci left: 7.128095e-01	ci right 7.155447e-01	k: 299955	n:420000
KS ci ratio: 1.588617e-01	ci left: 1.332611e-03	ci right 1.564831e-03	k: 607	n:420000
PDCD1   420000 perm   127 sec   (3317 perm/sec)   p_kst 1.445238e-03   p_cons 7.141786e-01   p_joint 4.107143e-03

Joint ci ratio: 9.322122e-02	ci left: 3.904379e-03	ci right 4.288397e-03	k: 1760	n:430000
Cons ci ratio: 3.780001e-03	ci left: 7.130170e-01	ci right 7.157196e-01	k: 307179	n:430000
KS ci ratio: 1.571904e-01	ci left: 1.330657e-03	ci right 1.559866e-03	k: 620	n:430000
PDCD1   430000 perm   131 sec   (3277 perm/sec)   p_kst 1.441860e-03   p_cons 7.143698e-01   p_joint 4.093023e-03

Joint ci ratio: 9.197540e-02	ci left: 3.922209e-03	ci right 4.302548e-03	k: 1808	n:440000
Cons ci ratio: 3.737418e-03	ci left: 7.129649e-01	ci right 7.156368e-01	k: 314293	n:440000
KS ci ratio: 1.548387e-01	ci left: 1.341911e-03	ci right 1.569280e-03	k: 639	n:440000
PDCD1   440000 perm   136 sec   (3241 perm/sec)   p_kst 1.452273e-03   p_cons 7.143023e-01   p_joint 4.109091e-03

Joint ci ratio: 9.082735e-02	ci left: 3.934936e-03	ci right 4.311493e-03	k: 1854	n:450000
Cons ci ratio: 3.693787e-03	ci left: 7.131868e-01	ci right 7.158282e-01	k: 321529	n:450000
KS ci ratio: 1.525895e-01	ci left: 1.352690e-03	ci right 1.578252e-03	k: 658	n:450000
PDCD1   450000 perm   140 sec   (3208 perm/sec)   p_kst 1.462222e-03   p_cons 7.145089e-01   p_joint 4.120000e-03

Joint ci ratio: 9.105349e-02	ci left: 3.830264e-03	ci right 4.197766e-03	k: 1845	n:460000
Cons ci ratio: 3.654041e-03	ci left: 7.131314e-01	ci right 7.157441e-01	k: 328642	n:460000
KS ci ratio: 1.509942e-01	ci left: 1.352562e-03	ci right 1.575532e-03	k: 672	n:460000
PDCD1   460000 perm   145 sec   (3173 perm/sec)   p_kst 1.460870e-03   p_cons 7.144391e-01   p_joint 4.010870e-03

Joint ci ratio: 8.849499e-02	ci left: 3.973411e-03	ci right 4.343381e-03	k: 1953	n:470000
Cons ci ratio: 3.613629e-03	ci left: 7.132959e-01	ci right 7.158802e-01	k: 335857	n:470000
KS ci ratio: 1.484770e-01	ci left: 1.370888e-03	ci right 1.592777e-03	k: 695	n:470000
PDCD1   470000 perm   150 sec   (3141 perm/sec)   p_kst 1.478723e-03   p_cons 7.145894e-01   p_joint 4.155319e-03

Joint ci ratio: 8.758097e-02	ci left: 3.974168e-03	ci right 4.340191e-03	k: 1994	n:480000
Cons ci ratio: 3.576353e-03	ci left: 7.132450e-01	ci right 7.158024e-01	k: 342972	n:480000
KS ci ratio: 1.471098e-01	ci left: 1.368410e-03	ci right 1.587679e-03	k: 708	n:480000
PDCD1   480000 perm   154 sec   (3107 perm/sec)   p_kst 1.475000e-03   p_cons 7.145250e-01   p_joint 4.154167e-03

Joint ci ratio: 8.686625e-02	ci left: 3.958939e-03	ci right 4.320432e-03	k: 2027	n:490000
Cons ci ratio: 3.538507e-03	ci left: 7.133925e-01	ci right 7.159233e-01	k: 350183	n:490000
KS ci ratio: 1.458808e-01	ci left: 1.364075e-03	ci right 1.580664e-03	k: 720	n:490000
PDCD1   490000 perm   159 sec   (3072 perm/sec)   p_kst 1.469388e-03   p_cons 7.146592e-01   p_joint 4.136735e-03

Joint ci ratio: 8.585557e-02	ci left: 3.973688e-03	ci right 4.332095e-03	k: 2075	n:500000
Cons ci ratio: 3.502370e-03	ci left: 7.134722e-01	ci right 7.159773e-01	k: 357363	n:500000
KS ci ratio: 1.431262e-01	ci left: 1.390770e-03	ci right 1.607072e-03	k: 748	n:500000
PDCD1   500000 perm   165 sec   (3037 perm/sec)   p_kst 1.496000e-03   p_cons 7.147260e-01   p_joint 4.150000e-03

Joint ci ratio: 8.516167e-02	ci left: 3.961012e-03	ci right 4.315245e-03	k: 2109	n:510000
Cons ci ratio: 3.466717e-03	ci left: 7.136195e-01	ci right 7.160996e-01	k: 364579	n:510000
KS ci ratio: 1.422748e-01	ci left: 1.380517e-03	ci right 1.593838e-03	k: 757	n:510000
PDCD1   510000 perm   170 sec   (3006 perm/sec)   p_kst 1.484314e-03   p_cons 7.148608e-01   p_joint 4.135294e-03

Joint ci ratio: 8.438557e-02	ci left: 3.958249e-03	ci right 4.308850e-03	k: 2148	n:520000
Cons ci ratio: 3.434591e-03	ci left: 7.134686e-01	ci right 7.159252e-01	k: 371643	n:520000
KS ci ratio: 1.412541e-01	ci left: 1.374371e-03	ci right 1.585092e-03	k: 768	n:520000
PDCD1   520000 perm   175 sec   (2975 perm/sec)   p_kst 1.476923e-03   p_cons 7.146981e-01   p_joint 4.130769e-03

Joint ci ratio: 8.488607e-02	ci left: 3.837383e-03	ci right 4.179394e-03	k: 2123	n:530000
Cons ci ratio: 3.402145e-03	ci left: 7.134671e-01	ci right 7.159004e-01	k: 378783	n:530000
KS ci ratio: 1.398070e-01	ci left: 1.377567e-03	ci right 1.586434e-03	k: 784	n:530000
PDCD1   530000 perm   180 sec   (2942 perm/sec)   p_kst 1.479245e-03   p_cons 7.146849e-01   p_joint 4.005660e-03

Joint ci ratio: 8.415648e-02	ci left: 3.833391e-03	ci right 4.171965e-03	k: 2160	n:540000
Cons ci ratio: 3.369852e-03	ci left: 7.135566e-01	ci right 7.159670e-01	k: 385972	n:540000
KS ci ratio: 1.390132e-01	ci left: 1.368142e-03	ci right 1.574303e-03	k: 793	n:540000
PDCD1   540000 perm   185 sec   (2912 perm/sec)   p_kst 1.468519e-03   p_cons 7.147630e-01   p_joint 4.000000e-03

Joint ci ratio: 8.327438e-02	ci left: 3.845579e-03	ci right 4.181497e-03	k: 2206	n:550000
Cons ci ratio: 3.338103e-03	ci left: 7.136866e-01	ci right 7.160747e-01	k: 393185	n:550000
KS ci ratio: 1.373786e-01	ci left: 1.376618e-03	ci right 1.581418e-03	k: 812	n:550000
PDCD1   550000 perm   191 sec   (2882 perm/sec)   p_kst 1.476364e-03   p_cons 7.148818e-01   p_joint 4.010909e-03

Joint ci ratio: 8.128614e-02	ci left: 3.967556e-03	ci right 4.305463e-03	k: 2315	n:560000
Cons ci ratio: 3.308524e-03	ci left: 7.136530e-01	ci right 7.160198e-01	k: 400309	n:560000
KS ci ratio: 1.362935e-01	ci left: 1.374455e-03	ci right 1.577187e-03	k: 825	n:560000
PDCD1   560000 perm   196 sec   (2854 perm/sec)   p_kst 1.473214e-03   p_cons 7.148375e-01   p_joint 4.133929e-03

Joint ci ratio: 8.055892e-02	ci left: 3.970143e-03	ci right 4.305103e-03	k: 2357	n:570000
Cons ci ratio: 3.279887e-03	ci left: 7.135995e-01	ci right 7.159456e-01	k: 407421	n:570000
KS ci ratio: 1.349120e-01	ci left: 1.379155e-03	ci right 1.580353e-03	k: 842	n:570000
PDCD1   570000 perm   202 sec   (2826 perm/sec)   p_kst 1.477193e-03   p_cons 7.147737e-01   p_joint 4.135088e-03

Joint ci ratio: 7.978414e-02	ci left: 3.979414e-03	ci right 4.311776e-03	k: 2403	n:580000
Cons ci ratio: 3.251306e-03	ci left: 7.136326e-01	ci right 7.159583e-01	k: 414582	n:580000
KS ci ratio: 1.331845e-01	ci left: 1.392036e-03	ci right 1.592307e-03	k: 864	n:580000
PDCD1   580000 perm   207 sec   (2799 perm/sec)   p_kst 1.489655e-03   p_cons 7.147966e-01   p_joint 4.143103e-03

Joint ci ratio: 7.912864e-02	ci left: 3.978415e-03	ci right 4.307839e-03	k: 2443	n:590000
Cons ci ratio: 3.224211e-03	ci left: 7.135696e-01	ci right 7.158757e-01	k: 421687	n:590000
KS ci ratio: 1.319694e-01	ci left: 1.394661e-03	ci right 1.593336e-03	k: 880	n:590000
PDCD1   590000 perm   213 sec   (2773 perm/sec)   p_kst 1.491525e-03   p_cons 7.147237e-01   p_joint 4.140678e-03

Joint ci ratio: 7.858441e-02	ci left: 3.967657e-03	ci right 4.293826e-03	k: 2477	n:600000
Cons ci ratio: 3.197690e-03	ci left: 7.135205e-01	ci right 7.158074e-01	k: 428799	n:600000
KS ci ratio: 1.311536e-01	ci left: 1.389147e-03	ci right 1.585717e-03	k: 891	n:600000
PDCD1   600000 perm   219 sec   (2746 perm/sec)   p_kst 1.485000e-03   p_cons 7.146650e-01   p_joint 4.128333e-03

Joint ci ratio: 7.786471e-02	ci left: 3.976549e-03	ci right 4.300320e-03	k: 2523	n:610000
Cons ci ratio: 3.171316e-03	ci left: 7.135371e-01	ci right 7.158051e-01	k: 435950	n:610000
KS ci ratio: 1.294939e-01	ci left: 1.402850e-03	ci right 1.598655e-03	k: 914	n:610000
PDCD1   610000 perm   225 sec   (2716 perm/sec)   p_kst 1.498361e-03   p_cons 7.146721e-01   p_joint 4.136066e-03

Joint ci ratio: 7.719460e-02	ci left: 3.982003e-03	ci right 4.303303e-03	k: 2567	n:620000
Cons ci ratio: 3.145882e-03	ci left: 7.135144e-01	ci right 7.157642e-01	k: 443077	n:620000
KS ci ratio: 1.283072e-01	ci left: 1.406759e-03	ci right 1.601173e-03	k: 931	n:620000
PDCD1   620000 perm   231 sec   (2686 perm/sec)   p_kst 1.501613e-03   p_cons 7.146403e-01   p_joint 4.140323e-03

Joint ci ratio: 7.661517e-02	ci left: 3.979511e-03	ci right 4.298092e-03	k: 2606	n:630000
Cons ci ratio: 3.121111e-03	ci left: 7.134847e-01	ci right 7.157165e-01	k: 450199	n:630000
KS ci ratio: 1.270856e-01	ci left: 1.412088e-03	ci right 1.605241e-03	k: 949	n:630000
PDCD1   630000 perm   237 sec   (2662 perm/sec)   p_kst 1.506349e-03   p_cons 7.146016e-01   p_joint 4.136508e-03

Joint ci ratio: 7.614980e-02	ci left: 3.966375e-03	ci right 4.281890e-03	k: 2638	n:640000
Cons ci ratio: 3.097367e-03	ci left: 7.133964e-01	ci right 7.156110e-01	k: 457283	n:640000
KS ci ratio: 1.265545e-01	ci left: 1.402127e-03	ci right 1.593056e-03	k: 957	n:640000
PDCD1   640000 perm   243 sec   (2637 perm/sec)   p_kst 1.495312e-03   p_cons 7.145047e-01   p_joint 4.121875e-03

Joint ci ratio: 7.548029e-02	ci left: 3.976291e-03	ci right 4.289692e-03	k: 2685	n:650000
Cons ci ratio: 3.073276e-03	ci left: 7.134280e-01	ci right 7.156255e-01	k: 464443	n:650000
KS ci ratio: 1.254462e-01	ci left: 1.405886e-03	ci right 1.595525e-03	k: 974	n:650000
PDCD1   650000 perm   249 sec   (2614 perm/sec)   p_kst 1.498462e-03   p_cons 7.145277e-01   p_joint 4.130769e-03

Joint ci ratio: 7.486940e-02	ci left: 3.981458e-03	ci right 4.292616e-03	k: 2729	n:660000
Cons ci ratio: 3.049976e-03	ci left: 7.134269e-01	ci right 7.156076e-01	k: 471582	n:660000
KS ci ratio: 1.244293e-01	ci left: 1.408069e-03	ci right 1.596350e-03	k: 990	n:660000
PDCD1   660000 perm   255 sec   (2591 perm/sec)   p_kst 1.500000e-03   p_cons 7.145182e-01   p_joint 4.134848e-03

Joint ci ratio: 7.428655e-02	ci left: 3.985016e-03	ci right 4.293923e-03	k: 2772	n:670000
Cons ci ratio: 3.027840e-03	ci left: 7.133392e-01	ci right 7.155038e-01	k: 478663	n:670000
KS ci ratio: 1.234367e-01	ci left: 1.410194e-03	ci right 1.597144e-03	k: 1006	n:670000
PDCD1   670000 perm   261 sec   (2568 perm/sec)   p_kst 1.501493e-03   p_cons 7.144224e-01   p_joint 4.137313e-03

Joint ci ratio: 7.373026e-02	ci left: 3.987034e-03	ci right 4.293684e-03	k: 2814	n:680000
Cons ci ratio: 3.005897e-03	ci left: 7.132924e-01	ci right 7.154411e-01	k: 485770	n:680000
KS ci ratio: 1.224076e-01	ci left: 1.413687e-03	ci right 1.599425e-03	k: 1023	n:680000
PDCD1   680000 perm   267 sec   (2545 perm/sec)   p_kst 1.504412e-03   p_cons 7.143676e-01   p_joint 4.138235e-03

Joint ci ratio: 7.312205e-02	ci left: 3.996117e-03	ci right 4.300822e-03	k: 2861	n:690000
Cons ci ratio: 2.983789e-03	ci left: 7.133340e-01	ci right 7.154671e-01	k: 492937	n:690000
KS ci ratio: 1.211129e-01	ci left: 1.424112e-03	ci right 1.609099e-03	k: 1045	n:690000
PDCD1   690000 perm   273 sec   (2524 perm/sec)   p_kst 1.514493e-03   p_cons 7.144014e-01   p_joint 4.146377e-03

Joint ci ratio: 7.255370e-02	ci left: 4.002145e-03	ci right 4.304838e-03	k: 2906	n:700000
Cons ci ratio: 2.962690e-03	ci left: 7.133016e-01	ci right 7.154195e-01	k: 500053	n:700000
KS ci ratio: 1.201970e-01	ci left: 1.425935e-03	ci right 1.609658e-03	k: 1061	n:700000
PDCD1   700000 perm   280 sec   (2502 perm/sec)   p_kst 1.515714e-03   p_cons 7.143614e-01   p_joint 4.151429e-03

Joint ci ratio: 7.207199e-02	ci left: 3.999713e-03	ci right 4.300129e-03	k: 2945	n:710000
Cons ci ratio: 2.941860e-03	ci left: 7.132942e-01	ci right 7.153970e-01	k: 507186	n:710000
KS ci ratio: 1.195797e-01	ci left: 1.420880e-03	ci right 1.602945e-03	k: 1072	n:710000
PDCD1   710000 perm   286 sec   (2479 perm/sec)   p_kst 1.509859e-03   p_cons 7.143465e-01   p_joint 4.147887e-03

Joint ci ratio: 7.159974e-02	ci left: 3.997355e-03	ci right 4.295545e-03	k: 2984	n:720000
Cons ci ratio: 2.921910e-03	ci left: 7.132244e-01	ci right 7.153128e-01	k: 514274	n:720000
KS ci ratio: 1.189718e-01	ci left: 1.415967e-03	ci right 1.596415e-03	k: 1083	n:720000
PDCD1   720000 perm   293 sec   (2455 perm/sec)   p_kst 1.504167e-03   p_cons 7.142694e-01   p_joint 4.144444e-03

Joint ci ratio: 7.113666e-02	ci left: 3.995068e-03	ci right 4.291080e-03	k: 3023	n:730000
Cons ci ratio: 2.901494e-03	ci left: 7.132786e-01	ci right 7.153525e-01	k: 521451	n:730000
KS ci ratio: 1.183189e-01	ci left: 1.412521e-03	ci right 1.591473e-03	k: 1095	n:730000
PDCD1   730000 perm   300 sec   (2435 perm/sec)   p_kst 1.500000e-03   p_cons 7.143164e-01   p_joint 4.141096e-03

Joint ci ratio: 7.062459e-02	ci left: 3.999486e-03	ci right 4.293605e-03	k: 3067	n:740000
Cons ci ratio: 2.881843e-03	ci left: 7.132827e-01	ci right 7.153426e-01	k: 528592	n:740000
KS ci ratio: 1.174646e-01	ci left: 1.414417e-03	ci right 1.592225e-03	k: 1111	n:740000
PDCD1   740000 perm   306 sec   (2415 perm/sec)   p_kst 1.501351e-03   p_cons 7.143135e-01   p_joint 4.144595e-03

Joint ci ratio: 7.005564e-02	ci left: 4.011655e-03	ci right 4.304195e-03	k: 3117	n:750000
Cons ci ratio: 2.862923e-03	ci left: 7.132388e-01	ci right 7.152849e-01	k: 535697	n:750000
KS ci ratio: 1.166802e-01	ci left: 1.414972e-03	ci right 1.591581e-03	k: 1126	n:750000
PDCD1   750000 perm   313 sec   (2394 perm/sec)   p_kst 1.501333e-03   p_cons 7.142627e-01   p_joint 4.156000e-03

Joint ci ratio: 6.957745e-02	ci left: 4.014461e-03	ci right 4.305128e-03	k: 3160	n:760000
Cons ci ratio: 2.843839e-03	ci left: 7.132724e-01	ci right 7.153050e-01	k: 542860	n:760000
KS ci ratio: 1.156581e-01	ci left: 1.421905e-03	ci right 1.597719e-03	k: 1146	n:760000
PDCD1   760000 perm   320 sec   (2373 perm/sec)   p_kst 1.507895e-03   p_cons 7.142895e-01   p_joint 4.157895e-03

Joint ci ratio: 6.922835e-02	ci left: 4.003162e-03	ci right 4.291497e-03	k: 3192	n:770000
Cons ci ratio: 2.825033e-03	ci left: 7.133194e-01	ci right 7.153387e-01	k: 550034	n:770000
KS ci ratio: 1.152574e-01	ci left: 1.413528e-03	ci right 1.587659e-03	k: 1154	n:770000
PDCD1   770000 perm   327 sec   (2354 perm/sec)   p_kst 1.498701e-03   p_cons 7.143299e-01   p_joint 4.145455e-03

Joint ci ratio: 6.867097e-02	ci left: 4.017357e-03	ci right 4.304293e-03	k: 3244	n:780000
Cons ci ratio: 2.806533e-03	ci left: 7.133743e-01	ci right 7.153805e-01	k: 557215	n:780000
KS ci ratio: 1.142719e-01	ci left: 1.420311e-03	ci right 1.593681e-03	k: 1174	n:780000
PDCD1   780000 perm   334 sec   (2334 perm/sec)   p_kst 1.505128e-03   p_cons 7.143782e-01   p_joint 4.158974e-03

Joint ci ratio: 6.824124e-02	ci left: 4.017515e-03	ci right 4.302595e-03	k: 3285	n:790000
Cons ci ratio: 2.789222e-03	ci left: 7.133062e-01	ci right 7.152998e-01	k: 564300	n:790000
KS ci ratio: 1.135494e-01	ci left: 1.420779e-03	ci right 1.593036e-03	k: 1189	n:790000
PDCD1   790000 perm   341 sec   (2315 perm/sec)   p_kst 1.505063e-03   p_cons 7.143038e-01   p_joint 4.158228e-03

Joint ci ratio: 6.787071e-02	ci left: 4.011530e-03	ci right 4.294579e-03	k: 3321	n:800000
Cons ci ratio: 2.771921e-03	ci left: 7.132849e-01	ci right 7.152660e-01	k: 571421	n:800000
KS ci ratio: 1.127468e-01	ci left: 1.423668e-03	ci right 1.594974e-03	k: 1206	n:800000
PDCD1   800000 perm   348 sec   (2296 perm/sec)   p_kst 1.507500e-03   p_cons 7.142762e-01   p_joint 4.151250e-03

Joint ci ratio: 6.739540e-02	ci left: 4.019049e-03	ci right 4.300565e-03	k: 3368	n:810000
Cons ci ratio: 2.754572e-03	ci left: 7.133185e-01	ci right 7.152873e-01	k: 578586	n:810000
KS ci ratio: 1.122368e-01	ci left: 1.419290e-03	ci right 1.589245e-03	k: 1217	n:810000
PDCD1   810000 perm   356 sec   (2277 perm/sec)   p_kst 1.502469e-03   p_cons 7.143037e-01   p_joint 4.158025e-03

Joint ci ratio: 6.687098e-02	ci left: 4.033586e-03	ci right 4.313837e-03	k: 3421	n:820000
Cons ci ratio: 2.738052e-03	ci left: 7.132757e-01	ci right 7.152325e-01	k: 585689	n:820000
KS ci ratio: 1.116428e-01	ci left: 1.417391e-03	ci right 1.586162e-03	k: 1230	n:820000
PDCD1   820000 perm   363 sec   (2260 perm/sec)   p_kst 1.500000e-03   p_cons 7.142549e-01   p_joint 4.171951e-03

Joint ci ratio: 6.646434e-02	ci left: 4.034748e-03	ci right 4.313309e-03	k: 3463	n:830000
Cons ci ratio: 2.721255e-03	ci left: 7.133196e-01	ci right 7.152645e-01	k: 592863	n:830000
KS ci ratio: 1.109687e-01	ci left: 1.417883e-03	ci right 1.585627e-03	k: 1245	n:830000
PDCD1   830000 perm   370 sec   (2243 perm/sec)   p_kst 1.500000e-03   p_cons 7.142928e-01   p_joint 4.172289e-03

Joint ci ratio: 6.606503e-02	ci left: 4.035887e-03	ci right 4.312788e-03	k: 3505	n:840000
Cons ci ratio: 2.704756e-03	ci left: 7.133636e-01	ci right 7.152968e-01	k: 600038	n:840000
KS ci ratio: 1.100884e-01	ci left: 1.424155e-03	ci right 1.591217e-03	k: 1265	n:840000
PDCD1   840000 perm   377 sec   (2225 perm/sec)   p_kst 1.505952e-03   p_cons 7.143310e-01   p_joint 4.172619e-03

Joint ci ratio: 6.571934e-02	ci left: 4.031217e-03	ci right 4.306296e-03	k: 3542	n:850000
Cons ci ratio: 2.688987e-03	ci left: 7.133407e-01	ci right 7.152626e-01	k: 607157	n:850000
KS ci ratio: 1.093992e-01	ci left: 1.425707e-03	ci right 1.591837e-03	k: 1281	n:850000
PDCD1   850000 perm   385 sec   (2208 perm/sec)   p_kst 1.507059e-03   p_cons 7.143024e-01   p_joint 4.167059e-03

Joint ci ratio: 6.526927e-02	ci left: 4.040387e-03	ci right 4.314132e-03	k: 3591	n:860000
Cons ci ratio: 2.672973e-03	ci left: 7.133975e-01	ci right 7.153081e-01	k: 614344	n:860000
KS ci ratio: 1.088488e-01	ci left: 1.423833e-03	ci right 1.588856e-03	k: 1294	n:860000
PDCD1   860000 perm   392 sec   (2192 perm/sec)   p_kst 1.504651e-03   p_cons 7.143535e-01   p_joint 4.175581e-03

Joint ci ratio: 6.496284e-02	ci left: 4.032389e-03	ci right 4.304262e-03	k: 3625	n:870000
Cons ci ratio: 2.657907e-03	ci left: 7.133506e-01	ci right 7.152503e-01	k: 621442	n:870000
KS ci ratio: 1.081412e-01	ci left: 1.426477e-03	ci right 1.590663e-03	k: 1311	n:870000
PDCD1   870000 perm   400 sec   (2177 perm/sec)   p_kst 1.506897e-03   p_cons 7.143011e-01   p_joint 4.166667e-03

Joint ci ratio: 6.448400e-02	ci left: 4.046938e-03	ci right 4.317705e-03	k: 3679	n:880000
Cons ci ratio: 2.642740e-03	ci left: 7.133594e-01	ci right 7.152483e-01	k: 628588	n:880000
KS ci ratio: 1.073260e-01	ci left: 1.432382e-03	ci right 1.595927e-03	k: 1331	n:880000
PDCD1   880000 perm   407 sec   (2160 perm/sec)   p_kst 1.512500e-03   p_cons 7.143045e-01   p_joint 4.180682e-03

Joint ci ratio: 6.408456e-02	ci left: 4.052322e-03	ci right 4.321707e-03	k: 3725	n:890000
Cons ci ratio: 2.628090e-03	ci left: 7.133276e-01	ci right 7.152058e-01	k: 635698	n:890000
KS ci ratio: 1.064894e-01	ci left: 1.439253e-03	ci right 1.602221e-03	k: 1352	n:890000
PDCD1   890000 perm   415 sec   (2144 perm/sec)   p_kst 1.519101e-03   p_cons 7.142674e-01   p_joint 4.185393e-03

Joint ci ratio: 6.362474e-02	ci left: 4.066339e-03	ci right 4.334645e-03	k: 3779	n:900000
Cons ci ratio: 2.613810e-03	ci left: 7.132765e-01	ci right 7.151444e-01	k: 642790	n:900000
KS ci ratio: 1.055952e-01	ci left: 1.448140e-03	ci right 1.610651e-03	k: 1375	n:900000
PDCD1   900000 perm   423 sec   (2128 perm/sec)   p_kst 1.527778e-03   p_cons 7.142111e-01   p_joint 4.198889e-03

Joint ci ratio: 5.476392e-02	ci left: 5.445537e-03	ci right 5.753227e-03	k: 5094	n:910000
Cons ci ratio: 2.599066e-03	ci left: 7.133354e-01	ci right 7.151929e-01	k: 649981	n:910000
KS ci ratio: 1.050244e-01	ci left: 1.448275e-03	ci right 1.609869e-03	k: 1390	n:910000
PDCD1   910000 perm   431 sec   (2113 perm/sec)   p_kst 1.527473e-03   p_cons 7.142648e-01   p_joint 5.597802e-03

Joint ci ratio: 5.444417e-02	ci left: 5.450674e-03	ci right 5.756800e-03	k: 5154	n:920000
Cons ci ratio: 2.585237e-03	ci left: 7.132876e-01	ci right 7.151350e-01	k: 657075	n:920000
KS ci ratio: 1.045371e-01	ci left: 1.446293e-03	ci right 1.606871e-03	k: 1403	n:920000
PDCD1   920000 perm   438 sec   (2099 perm/sec)   p_kst 1.525000e-03   p_cons 7.142120e-01   p_joint 5.602174e-03

Joint ci ratio: 5.418221e-02	ci left: 5.445097e-03	ci right 5.749393e-03	k: 5204	n:930000
Cons ci ratio: 2.571437e-03	ci left: 7.132709e-01	ci right 7.151084e-01	k: 664197	n:930000
KS ci ratio: 1.040934e-01	ci left: 1.443308e-03	ci right 1.602833e-03	k: 1415	n:930000
PDCD1   930000 perm   446 sec   (2083 perm/sec)   p_kst 1.521505e-03   p_cons 7.141903e-01   p_joint 5.595699e-03

Joint ci ratio: 5.394465e-02	ci left: 5.435444e-03	ci right 5.737827e-03	k: 5250	n:940000
Cons ci ratio: 2.557575e-03	ci left: 7.132993e-01	ci right 7.151270e-01	k: 671361	n:940000
KS ci ratio: 1.038010e-01	ci left: 1.436243e-03	ci right 1.594514e-03	k: 1423	n:940000
PDCD1   940000 perm   455 sec   (2068 perm/sec)   p_kst 1.513830e-03   p_cons 7.142138e-01   p_joint 5.585106e-03

Joint ci ratio: 5.361358e-02	ci left: 5.445731e-03	ci right 5.746769e-03	k: 5315	n:950000
Cons ci ratio: 2.544342e-03	ci left: 7.132619e-01	ci right 7.150800e-01	k: 678463	n:950000
KS ci ratio: 1.032946e-01	ci left: 1.435480e-03	ci right 1.592848e-03	k: 1437	n:950000
PDCD1   950000 perm   463 sec   (2053 perm/sec)   p_kst 1.512632e-03   p_cons 7.141716e-01   p_joint 5.594737e-03

Joint ci ratio: 5.333340e-02	ci left: 5.446558e-03	ci right 5.746020e-03	k: 5371	n:960000
Cons ci ratio: 2.531280e-03	ci left: 7.132304e-01	ci right 7.150391e-01	k: 685570	n:960000
KS ci ratio: 1.029020e-01	ci left: 1.431689e-03	ci right 1.588010e-03	k: 1448	n:960000
PDCD1   960000 perm   471 sec   (2038 perm/sec)   p_kst 1.508333e-03   p_cons 7.141354e-01   p_joint 5.594792e-03

Joint ci ratio: 5.307232e-02	ci left: 5.444320e-03	ci right 5.742149e-03	k: 5424	n:970000
Cons ci ratio: 2.518010e-03	ci left: 7.132657e-01	ci right 7.150650e-01	k: 692741	n:970000
KS ci ratio: 1.022686e-01	ci left: 1.435011e-03	ci right 1.590671e-03	k: 1466	n:970000
PDCD1   970000 perm   479 sec   (2024 perm/sec)   p_kst 1.511340e-03   p_cons 7.141660e-01   p_joint 5.591753e-03

Joint ci ratio: 5.284901e-02	ci left: 5.435082e-03	ci right 5.731117e-03	k: 5470	n:980000
Cons ci ratio: 2.505178e-03	ci left: 7.132625e-01	ci right 7.150526e-01	k: 699875	n:980000
KS ci ratio: 1.016125e-01	ci left: 1.439261e-03	ci right 1.594321e-03	k: 1485	n:980000
PDCD1   980000 perm   487 sec   (2010 perm/sec)   p_kst 1.515306e-03   p_cons 7.141582e-01   p_joint 5.581633e-03

Joint ci ratio: 5.255191e-02	ci left: 5.441984e-03	ci right 5.736677e-03	k: 5532	n:990000
Cons ci ratio: 2.492225e-03	ci left: 7.133109e-01	ci right 7.150919e-01	k: 707060	n:990000
KS ci ratio: 1.010024e-01	ci left: 1.442444e-03	ci right 1.596859e-03	k: 1503	n:990000
PDCD1   990000 perm   496 sec   (1996 perm/sec)   p_kst 1.518182e-03   p_cons 7.142020e-01   p_joint 5.587879e-03

Joint ci ratio: 5.227856e-02	ci left: 5.444804e-03	ci right 5.738071e-03	k: 5590	n:1000000
Cons ci ratio: 2.479946e-03	ci left: 7.132803e-01	ci right 7.150524e-01	k: 714167	n:1000000
KS ci ratio: 1.003372e-01	ci left: 1.447517e-03	ci right 1.601394e-03	k: 1523	n:1000000
PDCD1   1000000 perm   504 sec   (1983 perm/sec)   p_kst 1.523000e-03   p_cons 7.141670e-01   p_joint 5.590000e-03

Joint ci ratio: 5.203260e-02	ci left: 5.442686e-03	ci right 5.734418e-03	k: 5643	n:1010000
Cons ci ratio: 2.467588e-03	ci left: 7.132930e-01	ci right 7.150563e-01	k: 721317	n:1010000
KS ci ratio: 9.994470e-02	ci left: 1.444768e-03	ci right 1.597717e-03	k: 1535	n:1010000
PDCD1   1010000 perm   513 sec   (1969 perm/sec)   p_kst 1.519802e-03   p_cons 7.141752e-01   p_joint 5.587129e-03

Outputting figure to mutsig2_images.part000000000128/PDCD1.2_887_1010000_0.0015198_0.71418_0.0055871.png
                gene_name: PDCD1
               theta_stop: 0.100 
                    nperm: 1010000 
                     p_ks: 0.0015 
        ci_ks_bounds_left: 0.0014 
       ci_ks_bounds_right: 0.0016 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.0056 
     ci_joint_bounds_left: 0.0054 
    ci_joint_bounds_right: 0.0057 

Current progress: 67 percent done.
PDE2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.692583e-03	ci left: 9.591130e-01	ci right 9.666143e-01	k: 9630	n:10000
Cons ci ratio: 3.548179e-02	ci left: 5.397853e-01	ci right 5.593858e-01	k: 5496	n:10000
KS ci ratio: 4.198959e-02	ci left: 4.557846e-01	ci right 4.754354e-01	k: 4656	n:10000
PDE2A   10000 perm   2 sec   (6609 perm/sec)   p_kst 4.656000e-01   p_cons 5.496000e-01   p_joint 9.630000e-01

Outputting figure to mutsig2_images.part000000000128/PDE2A.2_3048_10000_0.4656_0.5496_0.963.png
                gene_name: PDE2A
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000128
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 128 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1723>
Subject: Job 9877859: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1723>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000129> was used as the working directory.
Started at Fri Oct  5 22:51:19 2012
Results reported at Fri Oct  5 22:52:27 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000129.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000129.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 129  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000129.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     54.34 sec.
    Max Memory :      1902 MB
    Max Swap   :      4680 MB

    Max Processes  :         7
    Max Threads    :        74

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
129
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 129
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 129: processing genes 11607 - 11696
Calculating significance of each gene.
Using projection method.
11607	PDZD3	1
11608	PDZD4	1
11609	PDZD7	1
11610	PDZD8	1
11611	PDZD9	1
11612	PDZK1	1
11613	PDZK1IP1	1
11614	PDZRN3	2.965129e-02
11615	PDZRN4	1
11616	PEA15	1
11617	PEAR1	1
11618	PEBP1	1
11619	PEBP4	1
11620	PECAM1	1
11621	PECI	1
11622	PECR	1
11623	PEF1	1
11624	PEG10	1
11625	PEG3	3.282774e-01
11626	PELI1	1
11627	PELI2	1
11628	PELI3	1
11629	PELO	2.581237e-02
11630	PELP1	1
11631	PEMT	3.473265e-02
11632	PENK	1
11633	PEPD	1
11634	PER1	3.793670e-01
11635	PER2	1
11636	PER3	1
11637	PERP	1
11638	PES1	1.693634e-01
11639	PET112L	1
11640	PEX1	1.342668e-01
11641	PEX10	1
11642	PEX11A	1
11643	PEX11B	1
11644	PEX11G	1
11645	PEX12	1
11646	PEX13	1
11647	PEX14	1
11648	PEX16	1
11649	PEX19	1
11650	PEX2	1
11651	PEX26	1
11652	PEX3	1
11653	PEX5	1
11654	PEX5L	1
11655	PEX6	1
11656	PEX7	1
11657	PF4	1
11658	PF4V1	1
11659	PFAS	1
11660	PFDN1	1
11661	PFDN2	1
11662	PFDN4	1
11663	PFDN5	3.674989e-03
11664	PFDN6	1
11665	PFKFB1	1
11666	PFKFB2	1
11667	PFKFB3	1
11668	PFKFB4	1
11669	PFKL	1
11670	PFKM	4.759910e-02
11671	PFKP	2.950972e-01
11672	PFN1	1
11673	PFN2	4.219620e-02
11674	PFN3	1
11675	PFN4	1
11676	PGA3	1
11677	PGA5	1
11678	PGAM1	1
11679	PGAM2	1
11680	PGAM4	1
11681	PGAM5	1
11682	PGAP1	1
11683	PGAP2	1
11684	PGAP3	1
11685	PGBD1	2.422760e-01
11686	PGBD2	1
11687	PGBD3	1
11688	PGBD4	1
11689	PGBD5	1
11690	PGC	1
11691	PGCP	1
11692	PGD	1
11693	PGF	1
11694	PGGT1B	1
11695	PGK1	1
11696	PGK2	1
Done

Running MutSig 2:
Scatter job 129: processing genes 11607 - 11696
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PDZRN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.893970e-02	ci left: 6.377427e-01	ci right 6.565715e-01	k: 6472	n:10000
KS ci ratio: 3.034830e-02	ci left: 6.156270e-01	ci right 6.347000e-01	k: 6252	n:10000
PDZRN3   10000 perm   2 sec   (6091 perm/sec)   p_kst 6.252000e-01   p_cons 6.472000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000129/PDZRN3.2_3241_10000_0.6252_0.6472_1.png
                gene_name: PDZRN3
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000129
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 129 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 9877872: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000130> was used as the working directory.
Started at Fri Oct  5 22:51:19 2012
Results reported at Fri Oct  5 22:52:10 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000130.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000130.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 130  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000130.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     46.00 sec.
    Max Memory :       884 MB
    Max Swap   :      3705 MB

    Max Processes  :         7
    Max Threads    :        67

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
130
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 130
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 130: processing genes 11697 - 11787
Calculating significance of each gene.
Using projection method.
11697	PGLS	1
11698	PGLYRP1	1
11699	PGLYRP2	1.598854e-01
11700	PGLYRP3	1.179798e-01
11701	PGLYRP4	8.660538e-02
11702	PGM1	1
11703	PGM2	1
11704	PGM2L1	1
11705	PGM3	1.488361e-01
11706	PGM5	1
11707	PGP	1
11708	PGPEP1	1
11709	PGPEP1L	1
11710	PGR	1
11711	PGRMC1	1
11712	PGRMC2	1
11713	PGS1	1
11714	PHACTR1	1
11715	PHACTR2	1
11716	PHACTR3	1
11717	PHACTR4	1
11718	PHAX	1
11719	PHB	1
11720	PHB2	1
11721	PHC1	1
11722	PHC2	1
11723	PHC3	1
11724	PHEX	1
11725	PHF1	1
11726	PHF10	1
11727	PHF11	1
11728	PHF12	1
11729	PHF13	1
11730	PHF14	1
11731	PHF15	1
11732	PHF16	1
11733	PHF17	1
11734	PHF19	1
11735	PHF2	1
11736	PHF20	1.794234e-01
11737	PHF20L1	1
11738	PHF21A	1
11739	PHF21B	1
11740	PHF23	1
In gene PHF3 the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 6180    n = 1	mu =   9.08e-07
11741	PHF3	4.676677e-01
11742	PHF5A	1
11743	PHF6	1
11744	PHF7	1
11745	PHF8	1
11746	PHGDH	5.662484e-02
11747	PHIP	1
11748	PHKA1	1
11749	PHKA2	1
11750	PHKB	1
11751	PHKG1	1
11752	PHKG2	1
11753	PHLDA1	1
11754	PHLDA2	1
11755	PHLDA3	1
11756	PHLDB1	1
11757	PHLDB2	1
11758	PHLDB3	1
11759	PHLPP1	1
11760	PHLPP2	3.425121e-01
11761	PHOSPHO1	1
11762	PHOSPHO2	1
11763	PHOX2A	1
11764	PHOX2B	1
11765	PHPT1	1
11766	PHRF1	1
11767	PHTF1	1
11768	PHTF2	9.374551e-02
11769	PHYH	2.961108e-02
11770	PHYHD1	1
11771	PHYHIP	1
11772	PHYHIPL	1
11773	PI15	1
11774	PI16	4.590324e-02
11775	PI3	1
11776	PI4K2A	1
11777	PI4K2B	1
11778	PI4KA	1
11779	PI4KB	1
11780	PIAS1	1
11781	PIAS2	1
11782	PIAS3	1.877697e-01
11783	PIAS4	1
11784	PIBF1	1
11785	PICALM	1
11786	PICK1	2.942716e-02
11787	PID1	1
Done

Running MutSig 2:
Scatter job 130: processing genes 11697 - 11787
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000130
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 130 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1655>
Subject: Job 9877892: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1655>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000131> was used as the working directory.
Started at Fri Oct  5 22:51:42 2012
Results reported at Fri Oct  5 23:06:25 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000131.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000131.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 131  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000131.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    916.98 sec.
    Max Memory :      2185 MB
    Max Swap   :      4683 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
131
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 131
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 131: processing genes 11788 - 11878
Calculating significance of each gene.
Using projection method.
11788	PIF1	1
11789	PIGA	5.586004e-02
11790	PIGB	1
11791	PIGC	1
11792	PIGF	1
11793	PIGG	1
11794	PIGH	1
11795	PIGK	1
11796	PIGL	1
11797	PIGM	1
11798	PIGN	1
11799	PIGO	2.683840e-01
11800	PIGP	1
11801	PIGQ	7.763207e-02
11802	PIGR	1
11803	PIGS	1
11804	PIGT	1
11805	PIGU	1
11806	PIGV	1
11807	PIGW	1
11808	PIGX	1
11809	PIGY	1
11810	PIGZ	1
11811	PIH1D1	1
11812	PIH1D2	1
11813	PIK3AP1	1
11814	PIK3C2A	1
11815	PIK3C2B	1
11816	PIK3C2G	1
11817	PIK3C3	1
11818	PIK3CA	9.743985e-03
11819	PIK3CB	1
11820	PIK3CD	1
11821	PIK3CG	1.683564e-01
11822	PIK3IP1	1
11823	PIK3R1	1
11824	PIK3R2	1
11825	PIK3R3	1
11826	PIK3R4	1.133051e-01
11827	PIK3R5	1
11828	PIK3R6	1
11829	PIKFYVE	2.148639e-02
11830	PILRA	1
11831	PILRB	1
11832	PIM1	1.038390e-02
11833	PIM2	1
11834	PIM3	1
11835	PIN1	1
11836	PIN4	1
11837	PINK1	1
11838	PINX1	1
11839	PION	1
11840	PIP	1
11841	PIP4K2A	1
11842	PIP4K2B	1
11843	PIP4K2C	1
11844	PIP5K1A	1
11845	PIP5K1B	1
11846	PIP5K1C	2.052817e-03
11847	PIP5KL1	1
11848	PIPOX	1
11849	PIR	1
11850	PIRT	1
11851	PISD	1
11852	PITPNA	1
11853	PITPNB	1
11854	PITPNC1	6.504290e-02
11855	PITPNM1	1
11856	PITPNM2	1
11857	PITPNM3	1
11858	PITRM1	1
11859	PITX1	1
11860	PITX2	1
11861	PITX3	1
11862	PIWIL1	3.645991e-02
11863	PIWIL2	1.173729e-01
11864	PIWIL3	1.167220e-01
11865	PIWIL4	1
11866	PJA1	1
11867	PJA2	1
11868	PKD1	3.432507e-01
11869	PKD1L1	3.356709e-01
11870	PKD1L2	1
11871	PKD2	1
11872	PKD2L1	9.451752e-02
11873	PKD2L2	1
11874	PKDCC	1
11875	PKDREJ	1.948371e-01
11876	PKHD1	1
11877	PKHD1L1	1.641827e-01
11878	PKIA	1
Done

Running MutSig 2:
Scatter job 131: processing genes 11788 - 11878
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PIKFYVE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.203654e-02	ci left: 5.898183e-01	ci right 6.091237e-01	k: 5995	n:10000
Cons ci ratio: 1.687406e-02	ci left: 8.364327e-01	ci right 8.507666e-01	k: 8437	n:10000
KS ci ratio: 4.842331e-02	ci left: 3.861969e-01	ci right 4.054639e-01	k: 3958	n:10000
PIKFYVE   10000 perm   3 sec   (3873 perm/sec)   p_kst 3.958000e-01   p_cons 8.437000e-01   p_joint 5.995000e-01

Outputting figure to mutsig2_images.part000000000131/PIKFYVE.3_6472_10000_0.3958_0.8437_0.5995.png
                gene_name: PIKFYVE
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 14 percent done.
PIP5K1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.199832e-03	ci left: 9.800565e-01	ci right 9.852569e-01	k: 9828	n:10000
Cons ci ratio: 4.599094e-02	ci left: 4.109985e-01	ci right 4.304477e-01	k: 4207	n:10000
KS ci ratio: 1.585132e-02	ci left: 8.525343e-01	ci right 8.662556e-01	k: 8595	n:10000
PIP5K1C   10000 perm   2 sec   (5895 perm/sec)   p_kst 8.595000e-01   p_cons 4.207000e-01   p_joint 9.828000e-01

Outputting figure to mutsig2_images.part000000000131/PIP5K1C.3_2079_10000_0.8595_0.4207_0.9828.png
                gene_name: PIP5K1C
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 29 percent done.
PIK3CA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.177918e-01	ci left: 9.379779e-02	ci right 1.056366e-01	k: 996	n:10000
Cons ci ratio: 1.172051e-01	ci left: 9.467402e-02	ci right 1.065598e-01	k: 1005	n:10000
KS ci ratio: 7.559642e-02	ci left: 2.038267e-01	ci right 2.199415e-01	k: 2118	n:10000
PIK3CA   10000 perm   2 sec   (4992 perm/sec)   p_kst 2.118000e-01   p_cons 1.005000e-01   p_joint 9.960000e-02

Joint ci ratio: 8.620424e-02	ci left: 8.964657e-02	ci right 9.777200e-02	k: 1873	n:20000
Cons ci ratio: 8.146729e-02	ci left: 9.950760e-02	ci right 1.080080e-01	k: 2074	n:20000
KS ci ratio: 5.339941e-02	ci left: 2.065507e-01	ci right 2.179331e-01	k: 4244	n:20000
PIK3CA   20000 perm   4 sec   (4630 perm/sec)   p_kst 2.122000e-01   p_cons 1.037000e-01   p_joint 9.365000e-02

Outputting figure to mutsig2_images.part000000000131/PIK3CA.2_3287_20000_0.2122_0.1037_0.09365.png
                gene_name: PIK3CA
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.100 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.094 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.098 

Current progress: 43 percent done.
PIM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.959510e+00	ci left: 6.187149e-05	ci right 8.764745e-04	k: 3	n:10000
Cons ci ratio: 8.241153e-02	ci left: 1.768418e-01	ci right 1.921425e-01	k: 1844	n:10000
KS ci ratio: 1.181215e+00	ci left: 4.796397e-04	ci right 1.838264e-03	k: 10	n:10000
PIM1   10000 perm   1 sec   (6960 perm/sec)   p_kst 1.000000e-03   p_cons 1.844000e-01   p_joint 3.000000e-04

Joint ci ratio: 1.306340e+00	ci left: 1.727069e-04	ci right 7.880065e-04	k: 8	n:20000
Cons ci ratio: 6.217379e-02	ci left: 1.606203e-01	ci right 1.709771e-01	k: 3315	n:20000
KS ci ratio: 7.682562e-01	ci left: 8.090923e-04	ci right 1.844697e-03	k: 25	n:20000
PIM1   20000 perm   3 sec   (6125 perm/sec)   p_kst 1.250000e-03   p_cons 1.657500e-01   p_joint 4.000000e-04

Joint ci ratio: 9.504544e-01	ci left: 3.048758e-04	ci right 8.659558e-04	k: 16	n:30000
Cons ci ratio: 5.082620e-02	ci left: 1.612446e-01	ci right 1.696870e-01	k: 4963	n:30000
KS ci ratio: 6.529304e-01	ci left: 8.127564e-04	ci right 1.622181e-03	k: 35	n:30000
PIM1   30000 perm   5 sec   (5813 perm/sec)   p_kst 1.166667e-03   p_cons 1.654333e-01   p_joint 5.333333e-04

Joint ci ratio: 1.087022e+00	ci left: 1.550237e-04	ci right 5.239809e-04	k: 12	n:40000
Cons ci ratio: 4.391226e-02	ci left: 1.624646e-01	ci right 1.697839e-01	k: 6644	n:40000
KS ci ratio: 5.380899e-01	ci left: 9.710499e-04	ci right 1.704432e-03	k: 52	n:40000
PIM1   40000 perm   7 sec   (5624 perm/sec)   p_kst 1.300000e-03   p_cons 1.661000e-01   p_joint 3.000000e-04

Joint ci ratio: 1.011978e+00	ci left: 1.530868e-04	ci right 4.697478e-04	k: 14	n:50000
Cons ci ratio: 3.925442e-02	ci left: 1.630060e-01	ci right 1.695528e-01	k: 8313	n:50000
KS ci ratio: 4.750417e-01	ci left: 1.038628e-03	ci right 1.701445e-03	k: 67	n:50000
PIM1   50000 perm   9 sec   (5473 perm/sec)   p_kst 1.340000e-03   p_cons 1.662600e-01   p_joint 2.800000e-04

Joint ci ratio: 1.012005e+00	ci left: 1.275712e-04	ci right 3.914627e-04	k: 14	n:60000
Cons ci ratio: 3.592456e-02	ci left: 1.626005e-01	ci right 1.685653e-01	k: 9934	n:60000
KS ci ratio: 4.493662e-01	ci left: 9.833273e-04	ci right 1.566638e-03	k: 75	n:60000
PIM1   60000 perm   11 sec   (5339 perm/sec)   p_kst 1.250000e-03   p_cons 1.655667e-01   p_joint 2.333333e-04

Joint ci ratio: 9.506174e-01	ci left: 1.306538e-04	ci right 3.711592e-04	k: 16	n:70000
Cons ci ratio: 3.314809e-02	ci left: 1.637470e-01	ci right 1.692806e-01	k: 11655	n:70000
KS ci ratio: 4.326349e-01	ci left: 9.190414e-04	ci right 1.438021e-03	k: 81	n:70000
PIM1   70000 perm   13 sec   (5221 perm/sec)   p_kst 1.157143e-03   p_cons 1.665000e-01   p_joint 2.285714e-04

Joint ci ratio: 8.552965e-01	ci left: 1.527130e-04	ci right 3.860784e-04	k: 20	n:80000
Cons ci ratio: 3.107321e-02	ci left: 1.633406e-01	ci right 1.685086e-01	k: 13273	n:80000
KS ci ratio: 4.019421e-01	ci left: 9.496208e-04	ci right 1.437713e-03	k: 94	n:80000
PIM1   80000 perm   16 sec   (5109 perm/sec)   p_kst 1.175000e-03   p_cons 1.659125e-01   p_joint 2.500000e-04

Joint ci ratio: 7.542870e-01	ci left: 1.887202e-04	ci right 4.232607e-04	k: 26	n:90000
Cons ci ratio: 2.931995e-02	ci left: 1.632651e-01	ci right 1.681343e-01	k: 14912	n:90000
KS ci ratio: 3.669070e-01	ci left: 1.034864e-03	ci right 1.509332e-03	k: 113	n:90000
PIM1   90000 perm   18 sec   (5004 perm/sec)   p_kst 1.255556e-03   p_cons 1.656889e-01   p_joint 2.888889e-04

Joint ci ratio: 7.407029e-01	ci left: 1.779390e-04	ci right 3.928117e-04	k: 27	n:100000
Cons ci ratio: 2.782945e-02	ci left: 1.632511e-01	ci right 1.678683e-01	k: 16555	n:100000
KS ci ratio: 3.532353e-01	ci left: 1.013236e-03	ci right 1.456509e-03	k: 122	n:100000
PIM1   100000 perm   20 sec   (4910 perm/sec)   p_kst 1.220000e-03   p_cons 1.655500e-01   p_joint 2.700000e-04

Joint ci ratio: 7.039504e-01	ci left: 1.840153e-04	ci right 3.893124e-04	k: 30	n:110000
Cons ci ratio: 2.656985e-02	ci left: 1.629917e-01	ci right 1.673896e-01	k: 18170	n:110000
KS ci ratio: 3.384286e-01	ci left: 1.012442e-03	ci right 1.432749e-03	k: 133	n:110000
PIM1   110000 perm   23 sec   (4816 perm/sec)   p_kst 1.209091e-03   p_cons 1.651818e-01   p_joint 2.727273e-04

Joint ci ratio: 6.928694e-01	ci left: 1.755315e-04	ci right 3.666637e-04	k: 31	n:120000
Cons ci ratio: 2.547327e-02	ci left: 1.627132e-01	ci right 1.669197e-01	k: 19777	n:120000
KS ci ratio: 3.242227e-01	ci left: 1.019757e-03	ci right 1.421638e-03	k: 145	n:120000
PIM1   120000 perm   25 sec   (4726 perm/sec)   p_kst 1.208333e-03   p_cons 1.648083e-01   p_joint 2.583333e-04

Joint ci ratio: 6.443498e-01	ci left: 1.939608e-04	ci right 3.833579e-04	k: 36	n:130000
Cons ci ratio: 2.446311e-02	ci left: 1.629170e-01	ci right 1.669595e-01	k: 21441	n:130000
KS ci ratio: 3.068444e-01	ci left: 1.061740e-03	ci right 1.453360e-03	k: 162	n:130000
PIM1   130000 perm   28 sec   (4598 perm/sec)   p_kst 1.246154e-03   p_cons 1.649308e-01   p_joint 2.769231e-04

Joint ci ratio: 6.197157e-01	ci left: 1.980988e-04	ci right 3.807968e-04	k: 39	n:140000
Cons ci ratio: 2.357042e-02	ci left: 1.630235e-01	ci right 1.669189e-01	k: 23095	n:140000
KS ci ratio: 2.936285e-01	ci left: 1.084980e-03	ci right 1.464732e-03	k: 177	n:140000
PIM1   140000 perm   31 sec   (4514 perm/sec)   p_kst 1.264286e-03   p_cons 1.649643e-01   p_joint 2.785714e-04

Joint ci ratio: 5.908736e-01	ci left: 2.074696e-04	ci right 3.861189e-04	k: 43	n:150000
Cons ci ratio: 2.279752e-02	ci left: 1.627730e-01	ci right 1.665333e-01	k: 24697	n:150000
KS ci ratio: 2.805336e-01	ci left: 1.117828e-03	ci right 1.488547e-03	k: 194	n:150000
PIM1   150000 perm   34 sec   (4434 perm/sec)   p_kst 1.293333e-03   p_cons 1.646467e-01   p_joint 2.866667e-04

Joint ci ratio: 5.717050e-01	ci left: 2.104936e-04	ci right 3.834663e-04	k: 46	n:160000
Cons ci ratio: 2.208492e-02	ci left: 1.626927e-01	ci right 1.663320e-01	k: 26321	n:160000
KS ci ratio: 2.716255e-01	ci left: 1.123591e-03	ci right 1.482372e-03	k: 207	n:160000
PIM1   160000 perm   37 sec   (4358 perm/sec)   p_kst 1.293750e-03   p_cons 1.645062e-01   p_joint 2.875000e-04

Joint ci ratio: 5.599176e-01	ci left: 2.081919e-04	ci right 3.743418e-04	k: 48	n:170000
Cons ci ratio: 2.142741e-02	ci left: 1.627229e-01	ci right 1.662532e-01	k: 27962	n:170000
KS ci ratio: 2.617426e-01	ci left: 1.145326e-03	ci right 1.495565e-03	k: 223	n:170000
PIM1   170000 perm   40 sec   (4283 perm/sec)   p_kst 1.311765e-03   p_cons 1.644824e-01   p_joint 2.823529e-04

Joint ci ratio: 5.842844e-01	ci left: 1.776191e-04	ci right 3.281415e-04	k: 44	n:180000
Cons ci ratio: 2.084388e-02	ci left: 1.625078e-01	ci right 1.659363e-01	k: 29559	n:180000
KS ci ratio: 2.539271e-01	ci left: 1.154450e-03	ci right 1.495270e-03	k: 237	n:180000
PIM1   180000 perm   43 sec   (4213 perm/sec)   p_kst 1.316667e-03   p_cons 1.642167e-01   p_joint 2.444444e-04

Joint ci ratio: 5.657303e-01	ci left: 1.817625e-04	ci right 3.289341e-04	k: 47	n:190000
Cons ci ratio: 2.027792e-02	ci left: 1.626888e-01	ci right 1.660267e-01	k: 31227	n:190000
KS ci ratio: 2.448342e-01	ci left: 1.182510e-03	ci right 1.517212e-03	k: 255	n:190000
PIM1   190000 perm   46 sec   (4145 perm/sec)   p_kst 1.342105e-03   p_cons 1.643526e-01   p_joint 2.473684e-04

Joint ci ratio: 5.543010e-01	ci left: 1.812577e-04	ci right 3.238902e-04	k: 49	n:200000
Cons ci ratio: 1.978558e-02	ci left: 1.624394e-01	ci right 1.656904e-01	k: 32812	n:200000
KS ci ratio: 2.397393e-01	ci left: 1.175045e-03	ci right 1.499685e-03	k: 266	n:200000
PIM1   200000 perm   49 sec   (4081 perm/sec)   p_kst 1.330000e-03   p_cons 1.640600e-01   p_joint 2.450000e-04

Joint ci ratio: 5.383842e-01	ci left: 1.849391e-04	ci right 3.247069e-04	k: 52	n:210000
Cons ci ratio: 1.933751e-02	ci left: 1.620723e-01	ci right 1.652417e-01	k: 34367	n:210000
KS ci ratio: 2.336905e-01	ci left: 1.181804e-03	ci right 1.498884e-03	k: 280	n:210000
PIM1   210000 perm   52 sec   (4017 perm/sec)   p_kst 1.333333e-03   p_cons 1.636524e-01   p_joint 2.476190e-04

Joint ci ratio: 5.285054e-01	ci left: 1.843982e-04	ci right 3.202530e-04	k: 54	n:220000
Cons ci ratio: 1.889528e-02	ci left: 1.620745e-01	ci right 1.651707e-01	k: 35996	n:220000
KS ci ratio: 2.308365e-01	ci left: 1.158051e-03	ci right 1.464421e-03	k: 287	n:220000
PIM1   220000 perm   56 sec   (3955 perm/sec)   p_kst 1.304545e-03   p_cons 1.636182e-01   p_joint 2.454545e-04

Joint ci ratio: 5.285083e-01	ci left: 1.763807e-04	ci right 3.063294e-04	k: 54	n:230000
Cons ci ratio: 1.847738e-02	ci left: 1.621466e-01	ci right 1.651749e-01	k: 37641	n:230000
KS ci ratio: 2.269319e-01	ci left: 1.148686e-03	ci right 1.446719e-03	k: 297	n:230000
PIM1   230000 perm   59 sec   (3888 perm/sec)   p_kst 1.291304e-03   p_cons 1.636565e-01   p_joint 2.347826e-04

Joint ci ratio: 5.146579e-01	ci left: 1.798850e-04	ci right 3.076980e-04	k: 57	n:240000
Cons ci ratio: 1.808438e-02	ci left: 1.622383e-01	ci right 1.652032e-01	k: 39292	n:240000
KS ci ratio: 2.207215e-01	ci left: 1.167688e-03	ci right 1.461235e-03	k: 314	n:240000
PIM1   240000 perm   63 sec   (3832 perm/sec)   p_kst 1.308333e-03   p_cons 1.637167e-01   p_joint 2.375000e-04

Joint ci ratio: 5.102793e-01	ci left: 1.761719e-04	ci right 2.999036e-04	k: 58	n:250000
Cons ci ratio: 1.772941e-02	ci left: 1.621080e-01	ci right 1.650118e-01	k: 40889	n:250000
KS ci ratio: 2.179733e-01	ci left: 1.151221e-03	ci right 1.436542e-03	k: 322	n:250000
PIM1   250000 perm   66 sec   (3771 perm/sec)   p_kst 1.288000e-03   p_cons 1.635560e-01   p_joint 2.320000e-04

Joint ci ratio: 5.018447e-01	ci left: 1.761057e-04	ci right 2.970359e-04	k: 60	n:260000
Cons ci ratio: 1.738698e-02	ci left: 1.621071e-01	ci right 1.649542e-01	k: 42517	n:260000
KS ci ratio: 2.137149e-01	ci left: 1.154241e-03	ci right 1.433989e-03	k: 335	n:260000
PIM1   260000 perm   70 sec   (3714 perm/sec)   p_kst 1.288462e-03   p_cons 1.635269e-01   p_joint 2.307692e-04

Joint ci ratio: 4.788439e-01	ci left: 1.890582e-04	ci right 3.109829e-04	k: 66	n:270000
Cons ci ratio: 1.706088e-02	ci left: 1.621511e-01	ci right 1.649450e-01	k: 44157	n:270000
KS ci ratio: 2.093966e-01	ci left: 1.160597e-03	ci right 1.435473e-03	k: 349	n:270000
PIM1   270000 perm   74 sec   (3659 perm/sec)   p_kst 1.292593e-03   p_cons 1.635444e-01   p_joint 2.444444e-04

Joint ci ratio: 4.556297e-01	ci left: 2.043638e-04	ci right 3.277981e-04	k: 73	n:280000
Cons ci ratio: 1.674656e-02	ci left: 1.622885e-01	ci right 1.650327e-01	k: 45824	n:280000
KS ci ratio: 2.044878e-01	ci left: 1.176716e-03	ci right 1.448060e-03	k: 366	n:280000
PIM1   280000 perm   78 sec   (3609 perm/sec)   p_kst 1.307143e-03   p_cons 1.636571e-01   p_joint 2.607143e-04

Joint ci ratio: 4.495951e-01	ci left: 2.034268e-04	ci right 3.241726e-04	k: 75	n:290000
Cons ci ratio: 1.645894e-02	ci left: 1.622519e-01	ci right 1.649479e-01	k: 47443	n:290000
KS ci ratio: 2.017587e-01	ci left: 1.168868e-03	ci right 1.434362e-03	k: 376	n:290000
PIM1   290000 perm   81 sec   (3559 perm/sec)   p_kst 1.296552e-03   p_cons 1.635966e-01   p_joint 2.586207e-04

Joint ci ratio: 4.302157e-01	ci left: 2.173958e-04	ci right 3.392675e-04	k: 82	n:300000
Cons ci ratio: 1.619217e-02	ci left: 1.621085e-01	ci right 1.647581e-01	k: 49029	n:300000
KS ci ratio: 1.981134e-01	ci left: 1.174237e-03	ci right 1.435549e-03	k: 390	n:300000
PIM1   300000 perm   86 sec   (3505 perm/sec)   p_kst 1.300000e-03   p_cons 1.634300e-01   p_joint 2.733333e-04

Joint ci ratio: 4.202085e-01	ci left: 2.219055e-04	ci right 3.425995e-04	k: 86	n:310000
Cons ci ratio: 1.592930e-02	ci left: 1.621225e-01	ci right 1.647289e-01	k: 50661	n:310000
KS ci ratio: 1.953847e-01	ci left: 1.170094e-03	ci right 1.426471e-03	k: 401	n:310000
PIM1   310000 perm   90 sec   (3459 perm/sec)   p_kst 1.293548e-03   p_cons 1.634226e-01   p_joint 2.774194e-04

Joint ci ratio: 4.154607e-01	ci left: 2.205637e-04	ci right 3.387969e-04	k: 88	n:320000
Cons ci ratio: 1.569247e-02	ci left: 1.618993e-01	ci right 1.644631e-01	k: 52217	n:320000
KS ci ratio: 1.923001e-01	ci left: 1.172182e-03	ci right 1.424488e-03	k: 414	n:320000
PIM1   320000 perm   94 sec   (3414 perm/sec)   p_kst 1.293750e-03   p_cons 1.631781e-01   p_joint 2.750000e-04

Joint ci ratio: 3.979566e-01	ci left: 2.356435e-04	ci right 3.552384e-04	k: 96	n:330000
Cons ci ratio: 1.546005e-02	ci left: 1.617926e-01	ci right 1.643164e-01	k: 53807	n:330000
KS ci ratio: 1.886961e-01	ci left: 1.182835e-03	ci right 1.432115e-03	k: 430	n:330000
PIM1   330000 perm   98 sec   (3370 perm/sec)   p_kst 1.303030e-03   p_cons 1.630515e-01   p_joint 2.909091e-04

Joint ci ratio: 3.899961e-01	ci left: 2.393121e-04	ci right 3.577145e-04	k: 100	n:340000
Cons ci ratio: 1.522895e-02	ci left: 1.618478e-01	ci right 1.643344e-01	k: 55450	n:340000
KS ci ratio: 1.859132e-01	ci left: 1.184488e-03	ci right 1.430020e-03	k: 443	n:340000
PIM1   340000 perm   102 sec   (3327 perm/sec)   p_kst 1.302941e-03   p_cons 1.630882e-01   p_joint 2.941176e-04

Joint ci ratio: 3.843300e-01	ci left: 2.402117e-04	ci right 3.568958e-04	k: 103	n:350000
Cons ci ratio: 1.500824e-02	ci left: 1.618945e-01	ci right 1.643454e-01	k: 57091	n:350000
KS ci ratio: 1.830494e-01	ci left: 1.188799e-03	ci right 1.431007e-03	k: 457	n:350000
PIM1   350000 perm   107 sec   (3286 perm/sec)   p_kst 1.305714e-03   p_cons 1.631171e-01   p_joint 2.942857e-04

Joint ci ratio: 3.771451e-01	ci left: 2.435870e-04	ci right 3.591515e-04	k: 107	n:360000
Cons ci ratio: 1.478331e-02	ci left: 1.621880e-01	ci right 1.646063e-01	k: 58822	n:360000
KS ci ratio: 1.812780e-01	ci left: 1.179636e-03	ci right 1.417397e-03	k: 466	n:360000
PIM1   360000 perm   111 sec   (3245 perm/sec)   p_kst 1.294444e-03   p_cons 1.633944e-01   p_joint 2.972222e-04

Joint ci ratio: 3.720136e-01	ci left: 2.443484e-04	ci right 3.583127e-04	k: 110	n:370000
Cons ci ratio: 1.457799e-02	ci left: 1.622827e-01	ci right 1.646685e-01	k: 60485	n:370000
KS ci ratio: 1.789932e-01	ci left: 1.178724e-03	ci right 1.412982e-03	k: 478	n:370000
PIM1   370000 perm   115 sec   (3206 perm/sec)   p_kst 1.291892e-03   p_cons 1.634730e-01   p_joint 2.972973e-04

Joint ci ratio: 3.608087e-01	ci left: 2.546438e-04	ci right 3.689925e-04	k: 117	n:380000
Cons ci ratio: 1.438763e-02	ci left: 1.622467e-01	ci right 1.646005e-01	k: 62100	n:380000
KS ci ratio: 1.755440e-01	ci left: 1.195487e-03	ci right 1.428013e-03	k: 497	n:380000
PIM1   380000 perm   120 sec   (3165 perm/sec)   p_kst 1.307895e-03   p_cons 1.634211e-01   p_joint 3.078947e-04

Joint ci ratio: 3.548442e-01	ci left: 2.574490e-04	ci right 3.707056e-04	k: 121	n:390000
Cons ci ratio: 1.419948e-02	ci left: 1.623099e-01	ci right 1.646336e-01	k: 63753	n:390000
KS ci ratio: 1.736373e-01	ci left: 1.191806e-03	ci right 1.420834e-03	k: 508	n:390000
PIM1   390000 perm   125 sec   (3123 perm/sec)   p_kst 1.302564e-03   p_cons 1.634692e-01   p_joint 3.102564e-04

Joint ci ratio: 3.505602e-01	ci left: 2.578484e-04	ci right 3.695998e-04	k: 124	n:400000
Cons ci ratio: 1.401583e-02	ci left: 1.624224e-01	ci right 1.647174e-01	k: 65427	n:400000
KS ci ratio: 1.722897e-01	ci left: 1.181145e-03	ci right 1.406179e-03	k: 516	n:400000
PIM1   400000 perm   130 sec   (3088 perm/sec)   p_kst 1.290000e-03   p_cons 1.635675e-01   p_joint 3.100000e-04

Joint ci ratio: 3.477895e-01	ci left: 2.560096e-04	ci right 3.658894e-04	k: 126	n:410000
Cons ci ratio: 1.383456e-02	ci left: 1.626197e-01	ci right 1.648875e-01	k: 67138	n:410000
KS ci ratio: 1.708102e-01	ci left: 1.173345e-03	ci right 1.394776e-03	k: 525	n:410000
PIM1   410000 perm   134 sec   (3051 perm/sec)   p_kst 1.280488e-03   p_cons 1.637512e-01   p_joint 3.073171e-04

Joint ci ratio: 3.411382e-01	ci left: 2.607893e-04	ci right 3.701082e-04	k: 131	n:420000
Cons ci ratio: 1.367072e-02	ci left: 1.625964e-01	ci right 1.648368e-01	k: 68760	n:420000
KS ci ratio: 1.685813e-01	ci left: 1.177326e-03	ci right 1.396314e-03	k: 539	n:420000
PIM1   420000 perm   139 sec   (3016 perm/sec)   p_kst 1.283333e-03   p_cons 1.637143e-01   p_joint 3.119048e-04

Joint ci ratio: 3.373265e-01	ci left: 2.611069e-04	ci right 3.690698e-04	k: 134	n:430000
Cons ci ratio: 1.351233e-02	ci left: 1.625790e-01	ci right 1.647930e-01	k: 70384	n:430000
KS ci ratio: 1.676538e-01	ci left: 1.163312e-03	ci right 1.378383e-03	k: 545	n:430000
PIM1   430000 perm   144 sec   (2981 perm/sec)   p_kst 1.267442e-03   p_cons 1.636837e-01   p_joint 3.116279e-04

Joint ci ratio: 3.336398e-01	ci left: 2.614165e-04	ci right 3.680723e-04	k: 137	n:440000
Cons ci ratio: 1.336166e-02	ci left: 1.625149e-01	ci right 1.647032e-01	k: 71987	n:440000
KS ci ratio: 1.659904e-01	ci left: 1.160829e-03	ci right 1.373099e-03	k: 556	n:440000
PIM1   440000 perm   149 sec   (2947 perm/sec)   p_kst 1.263636e-03   p_cons 1.636068e-01   p_joint 3.113636e-04

Joint ci ratio: 3.277544e-01	ci left: 2.657961e-04	ci right 3.719230e-04	k: 142	n:450000
Cons ci ratio: 1.320519e-02	ci left: 1.626754e-01	ci right 1.648400e-01	k: 73690	n:450000
KS ci ratio: 1.636559e-01	ci left: 1.169122e-03	ci right 1.379606e-03	k: 572	n:450000
PIM1   450000 perm   154 sec   (2913 perm/sec)   p_kst 1.271111e-03   p_cons 1.637556e-01   p_joint 3.155556e-04

Joint ci ratio: 3.243697e-01	ci left: 2.660059e-04	ci right 3.708914e-04	k: 145	n:460000
Cons ci ratio: 1.305243e-02	ci left: 1.628638e-01	ci right 1.650057e-01	k: 75409	n:460000
KS ci ratio: 1.616923e-01	ci left: 1.172902e-03	ci right 1.381287e-03	k: 586	n:460000
PIM1   460000 perm   160 sec   (2879 perm/sec)   p_kst 1.273913e-03   p_cons 1.639326e-01   p_joint 3.152174e-04

Joint ci ratio: 3.200152e-01	ci left: 2.681687e-04	ci right 3.721966e-04	k: 149	n:470000
Cons ci ratio: 1.291828e-02	ci left: 1.627599e-01	ci right 1.648783e-01	k: 76994	n:470000
KS ci ratio: 1.596648e-01	ci left: 1.178579e-03	ci right 1.385095e-03	k: 601	n:470000
PIM1   470000 perm   165 sec   (2847 perm/sec)   p_kst 1.278723e-03   p_cons 1.638170e-01   p_joint 3.170213e-04

Joint ci ratio: 3.168624e-01	ci left: 2.683324e-04	ci right 3.711904e-04	k: 152	n:480000
Cons ci ratio: 1.278477e-02	ci left: 1.627332e-01	ci right 1.648292e-01	k: 78614	n:480000
KS ci ratio: 1.584851e-01	ci left: 1.172029e-03	ci right 1.375735e-03	k: 610	n:480000
PIM1   480000 perm   170 sec   (2816 perm/sec)   p_kst 1.270833e-03   p_cons 1.637792e-01   p_joint 3.166667e-04

Joint ci ratio: 3.127996e-01	ci left: 2.703746e-04	ci right 3.724211e-04	k: 156	n:490000
Cons ci ratio: 1.266061e-02	ci left: 1.625937e-01	ci right 1.646674e-01	k: 80178	n:490000
KS ci ratio: 1.565744e-01	ci left: 1.177515e-03	ci right 1.379476e-03	k: 625	n:490000
PIM1   490000 perm   176 sec   (2784 perm/sec)   p_kst 1.275510e-03   p_cons 1.636286e-01   p_joint 3.183673e-04

Joint ci ratio: 3.098533e-01	ci left: 2.704984e-04	ci right 3.714400e-04	k: 159	n:500000
Cons ci ratio: 1.253403e-02	ci left: 1.625896e-01	ci right 1.646423e-01	k: 81807	n:500000
KS ci ratio: 1.543700e-01	ci left: 1.188565e-03	ci right 1.389285e-03	k: 643	n:500000
PIM1   500000 perm   181 sec   (2756 perm/sec)   p_kst 1.286000e-03   p_cons 1.636140e-01   p_joint 3.180000e-04

Joint ci ratio: 3.069887e-01	ci left: 2.706217e-04	ci right 3.704930e-04	k: 162	n:510000
Cons ci ratio: 1.240949e-02	ci left: 1.626229e-01	ci right 1.646555e-01	k: 83455	n:510000
KS ci ratio: 1.530685e-01	ci left: 1.185999e-03	ci right 1.384442e-03	k: 654	n:510000
PIM1   510000 perm   187 sec   (2729 perm/sec)   p_kst 1.282353e-03   p_cons 1.636373e-01   p_joint 3.176471e-04

Joint ci ratio: 3.032897e-01	ci left: 2.725209e-04	ci right 3.716475e-04	k: 166	n:520000
Cons ci ratio: 1.228418e-02	ci left: 1.627528e-01	ci right 1.647663e-01	k: 85154	n:520000
KS ci ratio: 1.519137e-01	ci left: 1.181688e-03	ci right 1.377783e-03	k: 664	n:520000
PIM1   520000 perm   193 sec   (2699 perm/sec)   p_kst 1.276923e-03   p_cons 1.637577e-01   p_joint 3.192308e-04

Joint ci ratio: 3.014901e-01	ci left: 2.708663e-04	ci right 3.686944e-04	k: 168	n:530000
Cons ci ratio: 1.217383e-02	ci left: 1.626257e-01	ci right 1.646195e-01	k: 86719	n:530000
KS ci ratio: 1.503393e-01	ci left: 1.184808e-03	ci right 1.379200e-03	k: 678	n:530000
PIM1   530000 perm   198 sec   (2672 perm/sec)   p_kst 1.279245e-03   p_cons 1.636208e-01   p_joint 3.169811e-04

Joint ci ratio: 2.954327e-01	ci left: 2.778429e-04	ci right 3.757971e-04	k: 175	n:540000
Cons ci ratio: 1.206003e-02	ci left: 1.626475e-01	ci right 1.646228e-01	k: 88362	n:540000
KS ci ratio: 1.493532e-01	ci left: 1.178909e-03	ci right 1.370951e-03	k: 687	n:540000
PIM1   540000 perm   204 sec   (2645 perm/sec)   p_kst 1.272222e-03   p_cons 1.636333e-01   p_joint 3.240741e-04

Joint ci ratio: 2.913231e-01	ci left: 2.812133e-04	ci right 3.787223e-04	k: 180	n:550000
Cons ci ratio: 1.194706e-02	ci left: 1.627212e-01	ci right 1.646787e-01	k: 90034	n:550000
KS ci ratio: 1.478563e-01	ci left: 1.181982e-03	ci right 1.372424e-03	k: 701	n:550000
PIM1   550000 perm   210 sec   (2617 perm/sec)   p_kst 1.274545e-03   p_cons 1.636982e-01   p_joint 3.272727e-04

Joint ci ratio: 2.881563e-01	ci left: 2.828155e-04	ci right 3.796199e-04	k: 184	n:560000
Cons ci ratio: 1.183590e-02	ci left: 1.628226e-01	ci right 1.647630e-01	k: 91723	n:560000
KS ci ratio: 1.467115e-01	ci left: 1.179794e-03	ci right 1.368283e-03	k: 712	n:560000
PIM1   560000 perm   216 sec   (2591 perm/sec)   p_kst 1.271429e-03   p_cons 1.637911e-01   p_joint 3.285714e-04

Joint ci ratio: 2.866115e-01	ci left: 2.811097e-04	ci right 3.767209e-04	k: 186	n:570000
Cons ci ratio: 1.172726e-02	ci left: 1.629328e-01	ci right 1.648566e-01	k: 93419	n:570000
KS ci ratio: 1.454924e-01	ci left: 1.179379e-03	ci right 1.366100e-03	k: 724	n:570000
PIM1   570000 perm   222 sec   (2566 perm/sec)   p_kst 1.270175e-03   p_cons 1.638930e-01   p_joint 3.263158e-04

Joint ci ratio: 1.440100e-01	ci left: 1.183971e-03	ci right 1.369344e-03	k: 739	n:580000
Cons ci ratio: 1.162454e-02	ci left: 1.629688e-01	ci right 1.648760e-01	k: 95074	n:580000
KS ci ratio: 1.440100e-01	ci left: 1.183971e-03	ci right 1.369344e-03	k: 739	n:580000
PIM1   580000 perm   228 sec   (2541 perm/sec)   p_kst 1.274138e-03   p_cons 1.639207e-01   p_joint 1.274138e-03

Joint ci ratio: 1.430470e-01	ci left: 1.180244e-03	ci right 1.363693e-03	k: 749	n:590000
Cons ci ratio: 1.152164e-02	ci left: 1.630712e-01	ci right 1.649626e-01	k: 96769	n:590000
KS ci ratio: 1.430470e-01	ci left: 1.180244e-03	ci right 1.363693e-03	k: 749	n:590000
PIM1   590000 perm   234 sec   (2517 perm/sec)   p_kst 1.269492e-03   p_cons 1.640153e-01   p_joint 1.269492e-03

Joint ci ratio: 1.419163e-01	ci left: 1.179860e-03	ci right 1.361677e-03	k: 761	n:600000
Cons ci ratio: 1.142419e-02	ci left: 1.631038e-01	ci right 1.649795e-01	k: 98424	n:600000
KS ci ratio: 1.419163e-01	ci left: 1.179860e-03	ci right 1.361677e-03	k: 761	n:600000
PIM1   600000 perm   241 sec   (2493 perm/sec)   p_kst 1.268333e-03   p_cons 1.640400e-01   p_joint 1.268333e-03

Joint ci ratio: 2.757643e-01	ci left: 2.855333e-04	ci right 3.783367e-04	k: 201	n:610000
Cons ci ratio: 1.133046e-02	ci left: 1.631043e-01	ci right 1.649645e-01	k: 100060	n:610000
KS ci ratio: 1.400889e-01	ci left: 1.192149e-03	ci right 1.373297e-03	k: 781	n:610000
PIM1   610000 perm   247 sec   (2469 perm/sec)   p_kst 1.280328e-03   p_cons 1.640328e-01   p_joint 3.295082e-04

Joint ci ratio: 1.393783e-01	ci left: 1.185373e-03	ci right 1.364501e-03	k: 789	n:620000
Cons ci ratio: 1.123841e-02	ci left: 1.631193e-01	ci right 1.649645e-01	k: 101705	n:620000
KS ci ratio: 1.393783e-01	ci left: 1.185373e-03	ci right 1.364501e-03	k: 789	n:620000
PIM1   620000 perm   254 sec   (2446 perm/sec)   p_kst 1.272581e-03   p_cons 1.640403e-01   p_joint 1.272581e-03

Joint ci ratio: 1.385048e-01	ci left: 1.181878e-03	ci right 1.359267e-03	k: 799	n:630000
Cons ci ratio: 1.114579e-02	ci left: 1.632020e-01	ci right 1.650328e-01	k: 103393	n:630000
KS ci ratio: 1.385048e-01	ci left: 1.181878e-03	ci right 1.359267e-03	k: 799	n:630000
PIM1   630000 perm   260 sec   (2419 perm/sec)   p_kst 1.268254e-03   p_cons 1.641159e-01   p_joint 1.268254e-03

Joint ci ratio: 2.672967e-01	ci left: 2.910792e-04	ci right 3.822937e-04	k: 214	n:640000
Cons ci ratio: 1.105605e-02	ci left: 1.632666e-01	ci right 1.650833e-01	k: 105071	n:640000
KS ci ratio: 1.371398e-01	ci left: 1.187550e-03	ci right 1.363890e-03	k: 815	n:640000
PIM1   640000 perm   267 sec   (2396 perm/sec)   p_kst 1.273438e-03   p_cons 1.641734e-01   p_joint 3.343750e-04

Joint ci ratio: 2.660623e-01	ci left: 2.894722e-04	ci right 3.796945e-04	k: 216	n:650000
Cons ci ratio: 1.096980e-02	ci left: 1.632955e-01	ci right 1.650982e-01	k: 106727	n:650000
KS ci ratio: 1.360603e-01	ci left: 1.188596e-03	ci right 1.363590e-03	k: 828	n:650000
PIM1   650000 perm   274 sec   (2374 perm/sec)   p_kst 1.273846e-03   p_cons 1.641954e-01   p_joint 3.323077e-04

Joint ci ratio: 2.648449e-01	ci left: 2.879149e-04	ci right 3.771731e-04	k: 218	n:660000
Cons ci ratio: 1.088848e-02	ci left: 1.632495e-01	ci right 1.650383e-01	k: 108334	n:660000
KS ci ratio: 1.353281e-01	ci left: 1.183760e-03	ci right 1.357028e-03	k: 837	n:660000
PIM1   660000 perm   280 sec   (2353 perm/sec)   p_kst 1.268182e-03   p_cons 1.641424e-01   p_joint 3.303030e-04

Joint ci ratio: 2.618720e-01	ci left: 2.905878e-04	ci right 3.794977e-04	k: 223	n:670000
Cons ci ratio: 1.080818e-02	ci left: 1.632243e-01	ci right 1.649995e-01	k: 109954	n:670000
KS ci ratio: 1.343695e-01	ci left: 1.183398e-03	ci right 1.355289e-03	k: 849	n:670000
PIM1   670000 perm   287 sec   (2332 perm/sec)   p_kst 1.267164e-03   p_cons 1.641104e-01   p_joint 3.328358e-04

Joint ci ratio: 2.601359e-01	ci left: 2.904376e-04	ci right 3.786167e-04	k: 226	n:680000
Cons ci ratio: 1.072945e-02	ci left: 1.632043e-01	ci right 1.649662e-01	k: 111577	n:680000
KS ci ratio: 1.338984e-01	ci left: 1.174523e-03	ci right 1.344478e-03	k: 855	n:680000
PIM1   680000 perm   294 sec   (2311 perm/sec)   p_kst 1.257353e-03   p_cons 1.640838e-01   p_joint 3.323529e-04

Joint ci ratio: 2.578737e-01	ci left: 2.916491e-04	ci right 3.793020e-04	k: 230	n:690000
Cons ci ratio: 1.064950e-02	ci left: 1.632601e-01	ci right 1.650094e-01	k: 113252	n:690000
KS ci ratio: 1.326639e-01	ci left: 1.179916e-03	ci right 1.348954e-03	k: 871	n:690000
PIM1   690000 perm   301 sec   (2291 perm/sec)   p_kst 1.262319e-03   p_cons 1.641333e-01   p_joint 3.333333e-04

Joint ci ratio: 2.567648e-01	ci left: 2.901556e-04	ci right 3.769245e-04	k: 232	n:700000
Cons ci ratio: 1.057351e-02	ci left: 1.632573e-01	ci right 1.649941e-01	k: 114887	n:700000
KS ci ratio: 1.315372e-01	ci left: 1.183781e-03	ci right 1.351819e-03	k: 886	n:700000
PIM1   700000 perm   308 sec   (2271 perm/sec)   p_kst 1.265714e-03   p_cons 1.641243e-01   p_joint 3.314286e-04

Joint ci ratio: 2.529920e-01	ci left: 2.952984e-04	ci right 3.821032e-04	k: 239	n:710000
Cons ci ratio: 1.049831e-02	ci left: 1.632757e-01	ci right 1.650003e-01	k: 116537	n:710000
KS ci ratio: 1.305112e-01	ci left: 1.186180e-03	ci right 1.353143e-03	k: 900	n:710000
PIM1   710000 perm   315 sec   (2251 perm/sec)   p_kst 1.267606e-03   p_cons 1.641366e-01   p_joint 3.366197e-04

Joint ci ratio: 2.514255e-01	ci left: 2.951003e-04	ci right 3.812257e-04	k: 242	n:720000
Cons ci ratio: 1.042042e-02	ci left: 1.634059e-01	ci right 1.651190e-01	k: 118268	n:720000
KS ci ratio: 1.291559e-01	ci left: 1.195237e-03	ci right 1.361595e-03	k: 919	n:720000
PIM1   720000 perm   323 sec   (2231 perm/sec)   p_kst 1.276389e-03   p_cons 1.642611e-01   p_joint 3.361111e-04

Joint ci ratio: 2.498878e-01	ci left: 2.949093e-04	ci right 3.803706e-04	k: 245	n:730000
Cons ci ratio: 1.034589e-02	ci left: 1.634889e-01	ci right 1.651905e-01	k: 119967	n:730000
KS ci ratio: 1.283908e-01	ci left: 1.193447e-03	ci right 1.358497e-03	k: 930	n:730000
PIM1   730000 perm   330 sec   (2212 perm/sec)   p_kst 1.273973e-03   p_cons 1.643384e-01   p_joint 3.356164e-04

Joint ci ratio: 2.483779e-01	ci left: 2.947250e-04	ci right 3.795371e-04	k: 248	n:740000
Cons ci ratio: 1.027724e-02	ci left: 1.634550e-01	ci right 1.651449e-01	k: 121581	n:740000
KS ci ratio: 1.276391e-01	ci left: 1.191708e-03	ci right 1.355479e-03	k: 941	n:740000
PIM1   740000 perm   337 sec   (2194 perm/sec)   p_kst 1.271622e-03   p_cons 1.642986e-01   p_joint 3.351351e-04

Joint ci ratio: 2.435347e-01	ci left: 3.033072e-04	ci right 3.886298e-04	k: 258	n:750000
Cons ci ratio: 1.020686e-02	ci left: 1.635046e-01	ci right 1.651833e-01	k: 123257	n:750000
KS ci ratio: 1.263047e-01	ci left: 1.201639e-03	ci right 1.364919e-03	k: 961	n:750000
PIM1   750000 perm   345 sec   (2175 perm/sec)   p_kst 1.281333e-03   p_cons 1.643427e-01   p_joint 3.440000e-04

Joint ci ratio: 2.407615e-01	ci left: 3.067321e-04	ci right 3.918890e-04	k: 264	n:760000
Cons ci ratio: 1.013878e-02	ci left: 1.635293e-01	ci right 1.651970e-01	k: 124915	n:760000
KS ci ratio: 1.252670e-01	ci left: 1.206218e-03	ci right 1.368674e-03	k: 977	n:760000
PIM1   760000 perm   352 sec   (2157 perm/sec)   p_kst 1.285526e-03   p_cons 1.643618e-01   p_joint 3.473684e-04

Joint ci ratio: 2.385216e-01	ci left: 3.088523e-04	ci right 3.936821e-04	k: 269	n:770000
Cons ci ratio: 1.007485e-02	ci left: 1.634769e-01	ci right 1.651335e-01	k: 126514	n:770000
KS ci ratio: 1.240672e-01	ci left: 1.214459e-03	ci right 1.376343e-03	k: 996	n:770000
PIM1   770000 perm   360 sec   (2139 perm/sec)   p_kst 1.293506e-03   p_cons 1.643039e-01   p_joint 3.493506e-04

Joint ci ratio: 2.380815e-01	ci left: 3.060981e-04	ci right 3.899934e-04	k: 270	n:780000
Cons ci ratio: 1.001114e-02	ci left: 1.634527e-01	ci right 1.650985e-01	k: 128134	n:780000
KS ci ratio: 1.235728e-01	ci left: 1.208828e-03	ci right 1.369272e-03	k: 1004	n:780000
PIM1   780000 perm   368 sec   (2122 perm/sec)   p_kst 1.287179e-03   p_cons 1.642744e-01   p_joint 3.461538e-04

Joint ci ratio: 1.224205e-01	ci left: 1.216837e-03	ci right 1.376729e-03	k: 1023	n:790000
Cons ci ratio: 9.945777e-03	ci left: 1.635075e-01	ci right 1.651431e-01	k: 129816	n:790000
KS ci ratio: 1.224205e-01	ci left: 1.216837e-03	ci right 1.376729e-03	k: 1023	n:790000
PIM1   790000 perm   375 sec   (2105 perm/sec)   p_kst 1.294937e-03   p_cons 1.643241e-01   p_joint 1.294937e-03

Joint ci ratio: 1.214749e-01	ci left: 1.221017e-03	ci right 1.380130e-03	k: 1039	n:800000
Cons ci ratio: 9.885727e-03	ci left: 1.634487e-01	ci right 1.650737e-01	k: 131408	n:800000
KS ci ratio: 1.214749e-01	ci left: 1.221017e-03	ci right 1.380130e-03	k: 1039	n:800000
PIM1   800000 perm   383 sec   (2089 perm/sec)   p_kst 1.298750e-03   p_cons 1.642600e-01   p_joint 1.298750e-03

Joint ci ratio: 1.206081e-01	ci left: 1.223900e-03	ci right 1.382170e-03	k: 1054	n:810000
Cons ci ratio: 9.822643e-03	ci left: 1.635059e-01	ci right 1.651211e-01	k: 133093	n:810000
KS ci ratio: 1.206081e-01	ci left: 1.223900e-03	ci right 1.382170e-03	k: 1054	n:810000
PIM1   810000 perm   391 sec   (2072 perm/sec)   p_kst 1.301235e-03   p_cons 1.643123e-01   p_joint 1.301235e-03

Joint ci ratio: 1.198718e-01	ci left: 1.224351e-03	ci right 1.381644e-03	k: 1067	n:820000
Cons ci ratio: 9.763438e-03	ci left: 1.634864e-01	ci right 1.650916e-01	k: 134716	n:820000
KS ci ratio: 1.198718e-01	ci left: 1.224351e-03	ci right 1.381644e-03	k: 1067	n:820000
PIM1   820000 perm   399 sec   (2056 perm/sec)   p_kst 1.301220e-03   p_cons 1.642878e-01   p_joint 1.301220e-03

Joint ci ratio: 1.189288e-01	ci left: 1.229471e-03	ci right 1.386091e-03	k: 1084	n:830000
Cons ci ratio: 9.706100e-03	ci left: 1.634445e-01	ci right 1.650398e-01	k: 136320	n:830000
KS ci ratio: 1.189288e-01	ci left: 1.229471e-03	ci right 1.386091e-03	k: 1084	n:830000
PIM1   830000 perm   407 sec   (2040 perm/sec)   p_kst 1.306024e-03   p_cons 1.642410e-01   p_joint 1.306024e-03

Joint ci ratio: 1.186018e-01	ci left: 1.221764e-03	ci right 1.376945e-03	k: 1090	n:840000
Cons ci ratio: 9.646581e-03	ci left: 1.634939e-01	ci right 1.650799e-01	k: 138000	n:840000
KS ci ratio: 1.186018e-01	ci left: 1.221764e-03	ci right 1.376945e-03	k: 1090	n:840000
PIM1   840000 perm   415 sec   (2024 perm/sec)   p_kst 1.297619e-03   p_cons 1.642857e-01   p_joint 1.297619e-03

Joint ci ratio: 1.179549e-01	ci left: 1.221091e-03	ci right 1.375281e-03	k: 1102	n:850000
Cons ci ratio: 9.589375e-03	ci left: 1.635069e-01	ci right 1.650836e-01	k: 139650	n:850000
KS ci ratio: 1.179549e-01	ci left: 1.221091e-03	ci right 1.375281e-03	k: 1102	n:850000
PIM1   850000 perm   423 sec   (2009 perm/sec)   p_kst 1.296471e-03   p_cons 1.642941e-01   p_joint 1.296471e-03

Joint ci ratio: 2.226008e-01	ci left: 3.203592e-04	ci right 4.016728e-04	k: 309	n:860000
Cons ci ratio: 9.531965e-03	ci left: 1.635545e-01	ci right 1.651221e-01	k: 141330	n:860000
KS ci ratio: 1.174240e-01	ci left: 1.218177e-03	ci right 1.371260e-03	k: 1112	n:860000
PIM1   860000 perm   431 sec   (1995 perm/sec)   p_kst 1.293023e-03   p_cons 1.643372e-01   p_joint 3.593023e-04

Joint ci ratio: 1.166405e-01	ci left: 1.220912e-03	ci right 1.373244e-03	k: 1127	n:870000
Cons ci ratio: 9.476406e-03	ci left: 1.635770e-01	ci right 1.651356e-01	k: 142989	n:870000
KS ci ratio: 1.166405e-01	ci left: 1.220912e-03	ci right 1.373244e-03	k: 1127	n:870000
PIM1   870000 perm   439 sec   (1980 perm/sec)   p_kst 1.295402e-03   p_cons 1.643552e-01   p_joint 1.295402e-03

Joint ci ratio: 2.184130e-01	ci left: 3.259617e-04	ci right 4.069319e-04	k: 321	n:880000
Cons ci ratio: 9.423795e-03	ci left: 1.635411e-01	ci right 1.650907e-01	k: 144597	n:880000
KS ci ratio: 1.158218e-01	ci left: 1.224692e-03	ci right 1.376349e-03	k: 1143	n:880000
PIM1   880000 perm   448 sec   (1965 perm/sec)   p_kst 1.298864e-03   p_cons 1.643148e-01   p_joint 3.647727e-04

Joint ci ratio: 2.170688e-01	ci left: 3.265485e-04	ci right 4.070988e-04	k: 325	n:890000
Cons ci ratio: 9.368831e-03	ci left: 1.636002e-01	ci right 1.651413e-01	k: 146289	n:890000
KS ci ratio: 1.151693e-01	ci left: 1.225116e-03	ci right 1.375913e-03	k: 1156	n:890000
PIM1   890000 perm   456 sec   (1951 perm/sec)   p_kst 1.298876e-03   p_cons 1.643697e-01   p_joint 3.651685e-04

Joint ci ratio: 2.164062e-01	ci left: 3.250218e-04	ci right 4.049181e-04	k: 327	n:900000
Cons ci ratio: 9.316023e-03	ci left: 1.636226e-01	ci right 1.651551e-01	k: 147949	n:900000
KS ci ratio: 1.148228e-01	ci left: 1.219057e-03	ci right 1.368627e-03	k: 1163	n:900000
PIM1   900000 perm   465 sec   (1937 perm/sec)   p_kst 1.292222e-03   p_cons 1.643878e-01   p_joint 3.633333e-04

Joint ci ratio: 1.140415e-01	ci left: 1.222740e-03	ci right 1.371672e-03	k: 1179	n:910000
Cons ci ratio: 9.264987e-03	ci left: 1.636182e-01	ci right 1.651422e-01	k: 149585	n:910000
KS ci ratio: 1.140415e-01	ci left: 1.222740e-03	ci right 1.371672e-03	k: 1179	n:910000
PIM1   910000 perm   473 sec   (1922 perm/sec)   p_kst 1.295604e-03   p_cons 1.643791e-01   p_joint 1.295604e-03

Joint ci ratio: 1.134661e-01	ci left: 1.222122e-03	ci right 1.370177e-03	k: 1191	n:920000
Cons ci ratio: 9.214270e-03	ci left: 1.636290e-01	ci right 1.651448e-01	k: 151235	n:920000
KS ci ratio: 1.134661e-01	ci left: 1.222122e-03	ci right 1.370177e-03	k: 1191	n:920000
PIM1   920000 perm   482 sec   (1908 perm/sec)   p_kst 1.294565e-03   p_cons 1.643859e-01   p_joint 1.294565e-03

Joint ci ratio: 2.119302e-01	ci left: 3.287837e-04	ci right 4.077161e-04	k: 341	n:930000
Cons ci ratio: 9.167176e-03	ci left: 1.635560e-01	ci right 1.650633e-01	k: 152807	n:930000
KS ci ratio: 1.128993e-01	ci left: 1.221519e-03	ci right 1.368712e-03	k: 1203	n:930000
PIM1   930000 perm   491 sec   (1894 perm/sec)   p_kst 1.293548e-03   p_cons 1.643086e-01   p_joint 3.666667e-04

Joint ci ratio: 1.126661e-01	ci left: 1.213693e-03	ci right 1.359621e-03	k: 1208	n:940000
Cons ci ratio: 9.116451e-03	ci left: 1.636151e-01	ci right 1.651146e-01	k: 154502	n:940000
KS ci ratio: 1.126661e-01	ci left: 1.213693e-03	ci right 1.359621e-03	k: 1208	n:940000
PIM1   940000 perm   500 sec   (1881 perm/sec)   p_kst 1.285106e-03   p_cons 1.643638e-01   p_joint 1.285106e-03

Joint ci ratio: 1.122032e-01	ci left: 1.211147e-03	ci right 1.356132e-03	k: 1218	n:950000
Cons ci ratio: 9.067184e-03	ci left: 1.636541e-01	ci right 1.651458e-01	k: 156179	n:950000
KS ci ratio: 1.122032e-01	ci left: 1.211147e-03	ci right 1.356132e-03	k: 1218	n:950000
PIM1   950000 perm   509 sec   (1868 perm/sec)   p_kst 1.282105e-03   p_cons 1.643989e-01   p_joint 1.282105e-03

Joint ci ratio: 1.115190e-01	ci left: 1.213719e-03	ci right 1.358067e-03	k: 1233	n:960000
Cons ci ratio: 9.021922e-03	ci left: 1.635946e-01	ci right 1.650783e-01	k: 157762	n:960000
KS ci ratio: 1.115190e-01	ci left: 1.213719e-03	ci right 1.358067e-03	k: 1233	n:960000
PIM1   960000 perm   518 sec   (1855 perm/sec)   p_kst 1.284375e-03   p_cons 1.643354e-01   p_joint 1.284375e-03

Joint ci ratio: 1.106699e-01	ci left: 1.220250e-03	ci right 1.364198e-03	k: 1252	n:970000
Cons ci ratio: 8.974804e-03	ci left: 1.636135e-01	ci right 1.650895e-01	k: 159420	n:970000
KS ci ratio: 1.106699e-01	ci left: 1.220250e-03	ci right 1.364198e-03	k: 1252	n:970000
PIM1   970000 perm   527 sec   (1842 perm/sec)   p_kst 1.290722e-03   p_cons 1.643505e-01   p_joint 1.290722e-03

Joint ci ratio: 1.103624e-01	ci left: 1.214744e-03	ci right 1.357618e-03	k: 1259	n:980000
Cons ci ratio: 8.929644e-03	ci left: 1.635944e-01	ci right 1.650627e-01	k: 161041	n:980000
KS ci ratio: 1.103624e-01	ci left: 1.214744e-03	ci right 1.357618e-03	k: 1259	n:980000
PIM1   980000 perm   536 sec   (1829 perm/sec)   p_kst 1.284694e-03   p_cons 1.643276e-01   p_joint 1.284694e-03

Joint ci ratio: 1.099272e-01	ci left: 1.212296e-03	ci right 1.354284e-03	k: 1269	n:990000
Cons ci ratio: 8.882055e-03	ci left: 1.636714e-01	ci right 1.651326e-01	k: 162757	n:990000
KS ci ratio: 1.099272e-01	ci left: 1.212296e-03	ci right 1.354284e-03	k: 1269	n:990000
PIM1   990000 perm   545 sec   (1816 perm/sec)   p_kst 1.281818e-03   p_cons 1.644010e-01   p_joint 1.281818e-03

Joint ci ratio: 1.090714e-01	ci left: 1.219626e-03	ci right 1.361288e-03	k: 1289	n:1000000
Cons ci ratio: 8.838402e-03	ci left: 1.636481e-01	ci right 1.651019e-01	k: 164374	n:1000000
KS ci ratio: 1.090714e-01	ci left: 1.219626e-03	ci right 1.361288e-03	k: 1289	n:1000000
PIM1   1000000 perm   554 sec   (1803 perm/sec)   p_kst 1.289000e-03   p_cons 1.643740e-01   p_joint 1.289000e-03

Joint ci ratio: 1.086094e-01	ci left: 1.218145e-03	ci right 1.358998e-03	k: 1300	n:1010000
Cons ci ratio: 8.795165e-03	ci left: 1.636322e-01	ci right 1.650787e-01	k: 165998	n:1010000
KS ci ratio: 1.086094e-01	ci left: 1.218145e-03	ci right 1.358998e-03	k: 1300	n:1010000
PIM1   1010000 perm   564 sec   (1791 perm/sec)   p_kst 1.287129e-03   p_cons 1.643545e-01   p_joint 1.287129e-03

Joint ci ratio: 1.081120e-01	ci left: 1.217648e-03	ci right 1.357758e-03	k: 1312	n:1020000
Cons ci ratio: 8.753212e-03	ci left: 1.635960e-01	ci right 1.650353e-01	k: 167601	n:1020000
KS ci ratio: 1.081120e-01	ci left: 1.217648e-03	ci right 1.357758e-03	k: 1312	n:1020000
PIM1   1020000 perm   573 sec   (1779 perm/sec)   p_kst 1.286275e-03   p_cons 1.643147e-01   p_joint 1.286275e-03

Joint ci ratio: 1.074996e-01	ci left: 1.219997e-03	ci right 1.359531e-03	k: 1327	n:1030000
Cons ci ratio: 8.709268e-03	ci left: 1.636420e-01	ci right 1.650744e-01	k: 169288	n:1030000
KS ci ratio: 1.074996e-01	ci left: 1.219997e-03	ci right 1.359531e-03	k: 1327	n:1030000
PIM1   1030000 perm   583 sec   (1766 perm/sec)   p_kst 1.288350e-03   p_cons 1.643573e-01   p_joint 1.288350e-03

Joint ci ratio: 1.070972e-01	ci left: 1.217623e-03	ci right 1.356332e-03	k: 1337	n:1040000
Cons ci ratio: 8.667525e-03	ci left: 1.636382e-01	ci right 1.650637e-01	k: 170924	n:1040000
KS ci ratio: 1.070972e-01	ci left: 1.217623e-03	ci right 1.356332e-03	k: 1337	n:1040000
PIM1   1040000 perm   593 sec   (1754 perm/sec)   p_kst 1.285577e-03   p_cons 1.643500e-01   p_joint 1.285577e-03

Joint ci ratio: 1.065412e-01	ci left: 1.219004e-03	ci right 1.357104e-03	k: 1351	n:1050000
Cons ci ratio: 8.625151e-03	ci left: 1.636735e-01	ci right 1.650922e-01	k: 172601	n:1050000
KS ci ratio: 1.065412e-01	ci left: 1.219004e-03	ci right 1.357104e-03	k: 1351	n:1050000
PIM1   1050000 perm   602 sec   (1743 perm/sec)   p_kst 1.286667e-03   p_cons 1.643819e-01   p_joint 1.286667e-03

Joint ci ratio: 1.059162e-01	ci left: 1.222197e-03	ci right 1.359796e-03	k: 1367	n:1060000
Cons ci ratio: 8.586311e-03	ci left: 1.636148e-01	ci right 1.650266e-01	k: 174179	n:1060000
KS ci ratio: 1.059162e-01	ci left: 1.222197e-03	ci right 1.359796e-03	k: 1367	n:1060000
PIM1   1060000 perm   612 sec   (1731 perm/sec)   p_kst 1.289623e-03   p_cons 1.643198e-01   p_joint 1.289623e-03

Joint ci ratio: 1.053401e-01	ci left: 1.224423e-03	ci right 1.361477e-03	k: 1382	n:1070000
Cons ci ratio: 8.544268e-03	ci left: 1.636767e-01	ci right 1.650821e-01	k: 175885	n:1070000
KS ci ratio: 1.053401e-01	ci left: 1.224423e-03	ci right 1.361477e-03	k: 1382	n:1070000
PIM1   1070000 perm   622 sec   (1720 perm/sec)   p_kst 1.291589e-03   p_cons 1.643785e-01   p_joint 1.291589e-03

Joint ci ratio: 1.051127e-01	ci left: 1.218495e-03	ci right 1.354572e-03	k: 1388	n:1080000
Cons ci ratio: 8.504269e-03	ci left: 1.636913e-01	ci right 1.650902e-01	k: 177541	n:1080000
KS ci ratio: 1.051127e-01	ci left: 1.218495e-03	ci right 1.354572e-03	k: 1388	n:1080000
PIM1   1080000 perm   632 sec   (1709 perm/sec)   p_kst 1.285185e-03   p_cons 1.643898e-01   p_joint 1.285185e-03

Joint ci ratio: 1.046243e-01	ci left: 1.218930e-03	ci right 1.354384e-03	k: 1401	n:1090000
Cons ci ratio: 8.463782e-03	ci left: 1.637394e-01	ci right 1.651321e-01	k: 179234	n:1090000
KS ci ratio: 1.046243e-01	ci left: 1.218930e-03	ci right 1.354384e-03	k: 1401	n:1090000
PIM1   1090000 perm   642 sec   (1698 perm/sec)   p_kst 1.285321e-03   p_cons 1.644349e-01   p_joint 1.285321e-03

Joint ci ratio: 1.041794e-01	ci left: 1.218473e-03	ci right 1.353266e-03	k: 1413	n:1100000
Cons ci ratio: 8.423894e-03	ci left: 1.637858e-01	ci right 1.651723e-01	k: 180926	n:1100000
KS ci ratio: 1.041794e-01	ci left: 1.218473e-03	ci right 1.353266e-03	k: 1413	n:1100000
PIM1   1100000 perm   652 sec   (1687 perm/sec)   p_kst 1.284545e-03   p_cons 1.644782e-01   p_joint 1.284545e-03

Joint ci ratio: 1.037402e-01	ci left: 1.218026e-03	ci right 1.352166e-03	k: 1425	n:1110000
Cons ci ratio: 8.385830e-03	ci left: 1.637901e-01	ci right 1.651702e-01	k: 182572	n:1110000
KS ci ratio: 1.037402e-01	ci left: 1.218026e-03	ci right 1.352166e-03	k: 1425	n:1110000
PIM1   1110000 perm   665 sec   (1670 perm/sec)   p_kst 1.283784e-03   p_cons 1.644793e-01   p_joint 1.283784e-03

Joint ci ratio: 1.032705e-01	ci left: 1.218457e-03	ci right 1.352000e-03	k: 1438	n:1120000
Cons ci ratio: 8.348033e-03	ci left: 1.638022e-01	ci right 1.651763e-01	k: 184227	n:1120000
KS ci ratio: 1.032705e-01	ci left: 1.218457e-03	ci right 1.352000e-03	k: 1438	n:1120000
PIM1   1120000 perm   678 sec   (1653 perm/sec)   p_kst 1.283929e-03   p_cons 1.644884e-01   p_joint 1.283929e-03

Joint ci ratio: 1.026657e-01	ci left: 1.222331e-03	ci right 1.355467e-03	k: 1455	n:1130000
Cons ci ratio: 8.309431e-03	ci left: 1.638575e-01	ci right 1.652256e-01	k: 185931	n:1130000
KS ci ratio: 1.026657e-01	ci left: 1.222331e-03	ci right 1.355467e-03	k: 1455	n:1130000
PIM1   1130000 perm   688 sec   (1642 perm/sec)   p_kst 1.287611e-03   p_cons 1.645407e-01   p_joint 1.287611e-03

Joint ci ratio: 1.020713e-01	ci left: 1.226140e-03	ci right 1.358871e-03	k: 1472	n:1140000
Cons ci ratio: 8.273735e-03	ci left: 1.638330e-01	ci right 1.651950e-01	k: 187545	n:1140000
KS ci ratio: 1.020713e-01	ci left: 1.226140e-03	ci right 1.358871e-03	k: 1472	n:1140000
PIM1   1140000 perm   699 sec   (1632 perm/sec)   p_kst 1.291228e-03   p_cons 1.645132e-01   p_joint 1.291228e-03

Joint ci ratio: 1.901127e-01	ci left: 3.344379e-04	ci right 4.055094e-04	k: 424	n:1150000
Cons ci ratio: 8.237401e-03	ci left: 1.638454e-01	ci right 1.652015e-01	k: 189201	n:1150000
KS ci ratio: 1.015896e-01	ci left: 1.227342e-03	ci right 1.359539e-03	k: 1486	n:1150000
PIM1   1150000 perm   709 sec   (1622 perm/sec)   p_kst 1.292174e-03   p_cons 1.645226e-01   p_joint 3.686957e-04

Joint ci ratio: 1.896671e-01	ci left: 3.331970e-04	ci right 4.038196e-04	k: 426	n:1160000
Cons ci ratio: 8.201747e-03	ci left: 1.638507e-01	ci right 1.652010e-01	k: 190849	n:1160000
KS ci ratio: 1.011822e-01	ci left: 1.226843e-03	ci right 1.358425e-03	k: 1498	n:1160000
PIM1   1160000 perm   720 sec   (1612 perm/sec)   p_kst 1.291379e-03   p_cons 1.645250e-01   p_joint 3.672414e-04

Joint ci ratio: 1.894456e-01	ci left: 3.311633e-04	ci right 4.012634e-04	k: 427	n:1170000
Cons ci ratio: 8.167873e-03	ci left: 1.638116e-01	ci right 1.651559e-01	k: 192445	n:1170000
KS ci ratio: 1.007130e-01	ci left: 1.228021e-03	ci right 1.359083e-03	k: 1512	n:1170000
PIM1   1170000 perm   730 sec   (1602 perm/sec)   p_kst 1.292308e-03   p_cons 1.644829e-01   p_joint 3.649573e-04

Joint ci ratio: 1.001190e-01	ci left: 1.232486e-03	ci right 1.363202e-03	k: 1530	n:1180000
Cons ci ratio: 8.133085e-03	ci left: 1.638180e-01	ci right 1.651566e-01	k: 194094	n:1180000
KS ci ratio: 1.001190e-01	ci left: 1.232486e-03	ci right 1.363202e-03	k: 1530	n:1180000
PIM1   1180000 perm   741 sec   (1593 perm/sec)   p_kst 1.296610e-03   p_cons 1.644864e-01   p_joint 1.296610e-03

Joint ci ratio: 9.966428e-02	ci left: 1.233600e-03	ci right 1.363805e-03	k: 1544	n:1190000
Cons ci ratio: 8.100596e-03	ci left: 1.637613e-01	ci right 1.650941e-01	k: 195668	n:1190000
KS ci ratio: 9.966428e-02	ci left: 1.233600e-03	ci right 1.363805e-03	k: 1544	n:1190000
PIM1   1190000 perm   752 sec   (1583 perm/sec)   p_kst 1.297479e-03   p_cons 1.644269e-01   p_joint 1.297479e-03

Outputting figure to mutsig2_images.part000000000131/PIM1.2_966_1190000_0.0012975_0.16443_0.0012975.png
                gene_name: PIM1
               theta_stop: 0.100 
                    nperm: 1190000 
                     p_ks: 0.0013 
        ci_ks_bounds_left: 0.0012 
       ci_ks_bounds_right: 0.0014 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.0013 
     ci_joint_bounds_left: 0.0012 
    ci_joint_bounds_right: 0.0014 

Current progress: 57 percent done.
PIWIL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.181024e-02	ci left: 5.932311e-01	ci right 6.125089e-01	k: 6029	n:10000
Cons ci ratio: 9.617167e-03	ci left: 9.385866e-01	ci right 9.477531e-01	k: 9433	n:10000
KS ci ratio: 5.621107e-02	ci left: 3.179062e-01	ci right 3.363946e-01	k: 3271	n:10000
PIWIL1   10000 perm   2 sec   (5770 perm/sec)   p_kst 3.271000e-01   p_cons 9.433000e-01   p_joint 6.029000e-01

Outputting figure to mutsig2_images.part000000000131/PIWIL1.2_2666_10000_0.3271_0.9433_0.6029.png
                gene_name: PIWIL1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 71 percent done.
PKD1
Processing conservation and coverage...
76% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.502117e-02	ci left: 7.015006e-01	ci right 7.193767e-01	k: 7105	n:10000
Cons ci ratio: 3.330595e-02	ci left: 5.709563e-01	ci right 5.903967e-01	k: 5807	n:10000
KS ci ratio: 3.488391e-02	ci left: 5.482006e-01	ci right 5.677656e-01	k: 5580	n:10000
PKD1   10000 perm   3 sec   (3434 perm/sec)   p_kst 5.580000e-01   p_cons 5.807000e-01   p_joint 7.105000e-01

Outputting figure to mutsig2_images.part000000000131/PKD1.2_13096_10000_0.558_0.5807_0.7105.png
                gene_name: PKD1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 86 percent done.
PKHD1L1
Processing conservation and coverage...
76% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.101379e-02	ci left: 9.216228e-01	ci right 9.319269e-01	k: 9269	n:10000
Cons ci ratio: 1.602799e-02	ci left: 8.497808e-01	ci right 8.636107e-01	k: 8568	n:10000
KS ci ratio: 4.807086e-02	ci left: 3.896815e-01	ci right 4.089772e-01	k: 3993	n:10000
PKHD1L1   10000 perm   3 sec   (3460 perm/sec)   p_kst 3.993000e-01   p_cons 8.568000e-01   p_joint 9.269000e-01

Outputting figure to mutsig2_images.part000000000131/PKHD1L1.2_13044_10000_0.3993_0.8568_0.9269.png
                gene_name: PKHD1L1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000131
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 131 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1640>
Subject: Job 9877915: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1640>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000132> was used as the working directory.
Started at Fri Oct  5 22:51:42 2012
Results reported at Fri Oct  5 22:53:20 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000132.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000132.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 132  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000132.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    101.00 sec.
    Max Memory :      1951 MB
    Max Swap   :      4722 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
132
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 132
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 132: processing genes 11879 - 11968
Calculating significance of each gene.
Using projection method.
11879	PKIB	1
11880	PKIG	1
11881	PKLR	1
11882	PKM2	1
11883	PKMYT1	1
11884	PKN1	1
11885	PKN2	1.405158e-01
11886	PKN3	1
11887	PKNOX1	1
11888	PKNOX2	1
11889	PKP1	1
11890	PKP2	1.363866e-01
11891	PKP3	1
11892	PKP4	1
11893	PLA1A	1
11894	PLA2G10	1
11895	PLA2G12A	1
11896	PLA2G12B	1
11897	PLA2G15	1
11898	PLA2G16	1
11899	PLA2G1B	1
11900	PLA2G2A	4.015089e-02
11901	PLA2G2C	1
11902	PLA2G2D	1
11903	PLA2G2E	1
11904	PLA2G2F	1
11905	PLA2G3	1
11906	PLA2G4A	4.049872e-02
11907	PLA2G4B	1
11908	PLA2G4C	1
11909	PLA2G4D	1
11910	PLA2G4E	1
11911	PLA2G4F	1
11912	PLA2G5	4.070046e-02
11913	PLA2G6	1
11914	PLA2G7	1
11915	PLA2R1	1
11916	PLAA	1
11917	PLAC1	1
11918	PLAC1L	3.218303e-02
11919	PLAC4	1.513958e-02
11920	PLAC8	1
11921	PLAC8L1	1
11922	PLAC9	1
11923	PLAG1	1
11924	PLAGL1	1
11925	PLAGL2	1
11926	PLAT	1
11927	PLAU	2.175675e-02
11928	PLAUR	1
11929	PLB1	1
11930	PLBD1	1
11931	PLBD2	1
11932	PLCB1	1
11933	PLCB2	1
11934	PLCB3	1
11935	PLCB4	2.664942e-01
11936	PLCD1	1
11937	PLCD3	1
11938	PLCD4	2.440111e-01
11939	PLCE1	1
11940	PLCG1	1
11941	PLCG2	1
11942	PLCH1	1
11943	PLCH2	1.859032e-03
11944	PLCL1	1
11945	PLCL2	1
11946	PLCXD1	1
11947	PLCXD2	3.231242e-02
11948	PLCXD3	4.707465e-02
11949	PLCZ1	1
11950	PLD1	2.764368e-01
11951	PLD2	1
11952	PLD3	1
11953	PLD4	1
11954	PLD5	1
11955	PLD6	1
11956	PLDN	1
11957	PLEC	1
11958	PLEK	1
11959	PLEK2	1
11960	PLEKHA1	1
11961	PLEKHA2	3.233777e-02
11962	PLEKHA3	7.989119e-02
11963	PLEKHA4	1
11964	PLEKHA5	1.940135e-01
11965	PLEKHA6	1
11966	PLEKHA7	1
11967	PLEKHA8	1.173596e-01
11968	PLEKHA9	1
Done

Running MutSig 2:
Scatter job 132: processing genes 11879 - 11968
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PLCH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.882633e-02	ci left: 1.557113e-01	ci right 1.702856e-01	k: 1629	n:10000
Cons ci ratio: 2.072783e-02	ci left: 7.732695e-01	ci right 7.895662e-01	k: 7815	n:10000
KS ci ratio: 1.522044e-01	ci left: 5.744795e-02	ci right 6.700903e-02	k: 621	n:10000
PLCH2   10000 perm   2 sec   (4811 perm/sec)   p_kst 6.210000e-02   p_cons 7.815000e-01   p_joint 1.629000e-01

Joint ci ratio: 5.523804e-02	ci left: 1.955637e-01	ci right 2.067233e-01	k: 4022	n:20000
Cons ci ratio: 1.487317e-02	ci left: 7.706110e-01	ci right 7.822085e-01	k: 15529	n:20000
KS ci ratio: 1.064906e-01	ci left: 6.006147e-02	ci right 6.686612e-02	k: 1268	n:20000
PLCH2   20000 perm   7 sec   (3066 perm/sec)   p_kst 6.340000e-02   p_cons 7.764500e-01   p_joint 2.011000e-01

Joint ci ratio: 3.968304e-02	ci left: 2.405387e-01	ci right 2.503107e-01	k: 7362	n:30000
Cons ci ratio: 1.210131e-02	ci left: 7.729179e-01	ci right 7.823616e-01	k: 23330	n:30000
KS ci ratio: 8.782760e-02	ci left: 5.952549e-02	ci right 6.502633e-02	k: 1867	n:30000
PLCH2   30000 perm   9 sec   (3304 perm/sec)   p_kst 6.223333e-02   p_cons 7.776667e-01   p_joint 2.454000e-01

Outputting figure to mutsig2_images.part000000000132/PLCH2.3_4339_30000_0.062233_0.77767_0.2454.png
                gene_name: PLCH2
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.062 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.065 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000132
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 132 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1645>
Subject: Job 9877931: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1645>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000133> was used as the working directory.
Started at Fri Oct  5 22:51:42 2012
Results reported at Fri Oct  5 23:01:07 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000133.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000133.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 133  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000133.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    585.86 sec.
    Max Memory :      2108 MB
    Max Swap   :      4632 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
133
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 133
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 133: processing genes 11969 - 12059
Calculating significance of each gene.
Using projection method.
11969	PLEKHB1	1
11970	PLEKHB2	1
11971	PLEKHF1	1
11972	PLEKHF2	1
11973	PLEKHG1	2.715873e-01
11974	PLEKHG2	1
11975	PLEKHG3	1
11976	PLEKHG4	1
11977	PLEKHG4B	1
11978	PLEKHG5	1
11979	PLEKHG6	1
11980	PLEKHG7	1
11981	PLEKHH1	1
11982	PLEKHH2	1
11983	PLEKHH3	1
11984	PLEKHJ1	1
11985	PLEKHM1	1
11986	PLEKHM2	1
11987	PLEKHM3	1
11988	PLEKHN1	1
11989	PLEKHO1	1
11990	PLEKHO2	1
11991	PLG	1.010092e-01
11992	PLGLB1	1
11993	PLGLB2	1
11994	PLIN1	1
11995	PLIN2	1
11996	PLIN3	3.725289e-02
11997	PLIN4	1
11998	PLIN5	1
11999	PLK1	1
12000/18134 12000	PLK1S1	1
12001	PLK2	1
12002	PLK3	1.089677e-01
12003	PLK4	1.654521e-01
12004	PLLP	1
12005	PLN	1
12006	PLOD1	1
12007	PLOD2	1
12008	PLOD3	1
12009	PLP1	3.622571e-02
12010	PLP2	1
12011	PLRG1	1
12012	PLS1	1
12013	PLS3	1
12014	PLSCR1	1
12015	PLSCR2	1
12016	PLSCR3	1
12017	PLSCR4	1
12018	PLSCR5	1
12019	PLTP	1
12020	PLUNC	1
12021	PLVAP	1
12022	PLXDC1	1
12023	PLXDC2	1
12024	PLXNA1	1
12025	PLXNA2	2.874229e-02
12026	PLXNA3	1
12027	PLXNA4	3.530164e-01
12028	PLXNB1	1
12029	PLXNB2	4.276624e-02
12030	PLXNB3	1
12031	PLXNC1	1
12032	PLXND1	1
12033	PM20D1	1.672800e-01
12034	PM20D2	1
12035	PMAIP1	1
12036	PMCH	1
12037	PMEPA1	1
12038	PMF1	1
12039	PMFBP1	1
12040	PML	1
12041	PMM1	1
12042	PMM2	1
12043	PMP2	1
12044	PMP22	1
12045	PMPCA	1
12046	PMPCB	1
12047	PMS1	1
12048	PMS2	1
12049	PMVK	1
12050	PNCK	1
12051	PNKD	1
12052	PNKP	1
12053	PNLDC1	1
12054	PNLIP	1
12055	PNLIPRP1	1
12056	PNLIPRP2	8.586469e-02
12057	PNLIPRP3	1
12058	PNMA1	1
12059	PNMA2	1
Done

Running MutSig 2:
Scatter job 133: processing genes 11969 - 12059
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PLXNA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.498298e-02	ci left: 3.276348e-01	ci right 3.462602e-01	k: 3369	n:10000
Cons ci ratio: 4.640851e-02	ci left: 4.066140e-01	ci right 4.260348e-01	k: 4163	n:10000
KS ci ratio: 8.028430e-02	ci left: 1.847145e-01	ci right 2.002650e-01	k: 1924	n:10000
PLXNA2   10000 perm   2 sec   (4055 perm/sec)   p_kst 1.924000e-01   p_cons 4.163000e-01   p_joint 3.369000e-01

Outputting figure to mutsig2_images.part000000000133/PLXNA2.3_5809_10000_0.1924_0.4163_0.3369.png
                gene_name: PLXNA2
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 33 percent done.
PLXNB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.423184e-01	ci left: 2.240510e-02	ci right 2.867545e-02	k: 254	n:10000
Cons ci ratio: 7.268333e-01	ci left: 1.861361e-03	ci right 4.044256e-03	k: 28	n:10000
KS ci ratio: 3.076409e-02	ci left: 6.091973e-01	ci right 6.283334e-01	k: 6188	n:10000
PLXNB2   10000 perm   2 sec   (4373 perm/sec)   p_kst 6.188000e-01   p_cons 2.800000e-03   p_joint 2.540000e-02

Joint ci ratio: 2.227351e-01	ci left: 1.355014e-02	ci right 1.699289e-02	k: 304	n:20000
Cons ci ratio: 5.327106e-01	ci left: 1.985643e-03	ci right 3.464850e-03	k: 53	n:20000
KS ci ratio: 2.197649e-02	ci left: 6.072118e-01	ci right 6.207550e-01	k: 12280	n:20000
PLXNB2   20000 perm   5 sec   (4093 perm/sec)   p_kst 6.140000e-01   p_cons 2.650000e-03   p_joint 1.520000e-02

Joint ci ratio: 1.149234e-01	ci left: 3.518393e-02	ci right 3.950626e-02	k: 1119	n:30000
Cons ci ratio: 4.196513e-01	ci left: 2.293583e-03	ci right 3.539117e-03	k: 86	n:30000
KS ci ratio: 1.806539e-02	ci left: 6.052556e-01	ci right 6.163230e-01	k: 18324	n:30000
PLXNB2   30000 perm   8 sec   (3955 perm/sec)   p_kst 6.108000e-01   p_cons 2.866667e-03   p_joint 3.730000e-02

Joint ci ratio: 1.134127e-01	ci left: 2.735298e-02	ci right 3.066587e-02	k: 1159	n:40000
Cons ci ratio: 3.573038e-01	ci left: 2.465140e-03	ci right 3.558989e-03	k: 119	n:40000
KS ci ratio: 1.565756e-02	ci left: 6.056257e-01	ci right 6.152083e-01	k: 24417	n:40000
PLXNB2   40000 perm   11 sec   (3800 perm/sec)   p_kst 6.104250e-01   p_cons 2.975000e-03   p_joint 2.897500e-02

Joint ci ratio: 1.300740e-01	ci left: 1.667845e-02	ci right 1.901801e-02	k: 891	n:50000
Cons ci ratio: 3.217416e-01	ci left: 2.484493e-03	ci right 3.454640e-03	k: 147	n:50000
KS ci ratio: 1.403187e-02	ci left: 6.052075e-01	ci right 6.137798e-01	k: 30475	n:50000
PLXNB2   50000 perm   13 sec   (3708 perm/sec)   p_kst 6.095000e-01   p_cons 2.940000e-03   p_joint 1.782000e-02

Joint ci ratio: 1.295359e-01	ci left: 1.405871e-02	ci right 1.602194e-02	k: 901	n:60000
Cons ci ratio: 2.877571e-01	ci left: 2.640096e-03	ci right 3.542364e-03	k: 184	n:60000
KS ci ratio: 1.285198e-02	ci left: 6.039967e-01	ci right 6.118262e-01	k: 36475	n:60000
PLXNB2   60000 perm   16 sec   (3655 perm/sec)   p_kst 6.079167e-01   p_cons 3.066667e-03   p_joint 1.501667e-02

Joint ci ratio: 1.192577e-01	ci left: 1.429278e-02	ci right 1.611916e-02	k: 1063	n:70000
Cons ci ratio: 2.694550e-01	ci left: 2.608437e-03	ci right 3.433613e-03	k: 210	n:70000
KS ci ratio: 1.189550e-02	ci left: 6.044148e-01	ci right 6.116619e-01	k: 42563	n:70000
PLXNB2   70000 perm   19 sec   (3601 perm/sec)   p_kst 6.080429e-01   p_cons 3.000000e-03   p_joint 1.518571e-02

Joint ci ratio: 1.257553e-01	ci left: 1.124485e-02	ci right 1.276584e-02	k: 959	n:80000
Cons ci ratio: 2.510843e-01	ci left: 2.656324e-03	ci right 3.430411e-03	k: 242	n:80000
KS ci ratio: 1.113496e-02	ci left: 6.043190e-01	ci right 6.110982e-01	k: 48617	n:80000
PLXNB2   80000 perm   23 sec   (3539 perm/sec)   p_kst 6.077125e-01   p_cons 3.025000e-03   p_joint 1.198750e-02

Joint ci ratio: 1.051755e-01	ci left: 1.439995e-02	ci right 1.600929e-02	k: 1367	n:90000
Cons ci ratio: 2.386479e-01	ci left: 2.632345e-03	ci right 3.355833e-03	k: 268	n:90000
KS ci ratio: 1.049794e-02	ci left: 6.045233e-01	ci right 6.109142e-01	k: 54695	n:90000
PLXNB2   90000 perm   26 sec   (3480 perm/sec)   p_kst 6.077222e-01   p_cons 2.977778e-03   p_joint 1.518889e-02

Joint ci ratio: 8.219260e-02	ci left: 2.132511e-02	ci right 2.316275e-02	k: 2223	n:100000
Cons ci ratio: 2.259804e-01	ci left: 2.661084e-03	ci right 3.348245e-03	k: 299	n:100000
KS ci ratio: 9.956353e-03	ci left: 6.048259e-01	ci right 6.108878e-01	k: 60786	n:100000
PLXNB2   100000 perm   29 sec   (3432 perm/sec)   p_kst 6.078600e-01   p_cons 2.990000e-03   p_joint 2.223000e-02

Joint ci ratio: 8.267685e-02	ci left: 1.919861e-02	ci right 2.086320e-02	k: 2202	n:110000
Cons ci ratio: 2.171200e-01	ci left: 2.633828e-03	ci right 3.283727e-03	k: 324	n:110000
KS ci ratio: 9.502725e-03	ci left: 6.044796e-01	ci right 6.102602e-01	k: 66811	n:110000
PLXNB2   110000 perm   33 sec   (3352 perm/sec)   p_kst 6.073727e-01   p_cons 2.945455e-03   p_joint 2.001818e-02

Joint ci ratio: 7.922898e-02	ci left: 1.919900e-02	ci right 2.079099e-02	k: 2398	n:120000
Cons ci ratio: 2.095266e-01	ci left: 2.603655e-03	ci right 3.220756e-03	k: 348	n:120000
KS ci ratio: 9.104649e-03	ci left: 6.042632e-01	ci right 6.097983e-01	k: 72844	n:120000
PLXNB2   120000 perm   37 sec   (3255 perm/sec)   p_kst 6.070333e-01   p_cons 2.900000e-03   p_joint 1.998333e-02

Joint ci ratio: 7.649579e-02	ci left: 1.904203e-02	ci right 2.056411e-02	k: 2573	n:130000
Cons ci ratio: 2.029508e-01	ci left: 2.571157e-03	ci right 3.159059e-03	k: 371	n:130000
KS ci ratio: 8.759792e-03	ci left: 6.036996e-01	ci right 6.090188e-01	k: 78827	n:130000
PLXNB2   130000 perm   40 sec   (3223 perm/sec)   p_kst 6.063615e-01   p_cons 2.853846e-03   p_joint 1.979231e-02

Joint ci ratio: 7.413725e-02	ci left: 1.885221e-02	ci right 2.031064e-02	k: 2740	n:140000
Cons ci ratio: 1.969575e-01	ci left: 2.543561e-03	ci right 3.105916e-03	k: 394	n:140000
KS ci ratio: 8.447041e-03	ci left: 6.034633e-01	ci right 6.085895e-01	k: 84844	n:140000
PLXNB2   140000 perm   44 sec   (3185 perm/sec)   p_kst 6.060286e-01   p_cons 2.814286e-03   p_joint 1.957143e-02

Joint ci ratio: 8.078786e-02	ci left: 1.482863e-02	ci right 1.608353e-02	k: 2317	n:150000
Cons ci ratio: 1.894313e-01	ci left: 2.577012e-03	ci right 3.122487e-03	k: 426	n:150000
KS ci ratio: 8.171025e-03	ci left: 6.029412e-01	ci right 6.078947e-01	k: 90813	n:150000
PLXNB2   150000 perm   48 sec   (3137 perm/sec)   p_kst 6.054200e-01   p_cons 2.840000e-03   p_joint 1.544667e-02

Joint ci ratio: 8.414941e-02	ci left: 1.281783e-02	ci right 1.394990e-02	k: 2140	n:160000
Cons ci ratio: 1.829067e-01	ci left: 2.600674e-03	ci right 3.130096e-03	k: 457	n:160000
KS ci ratio: 7.908584e-03	ci left: 6.032003e-01	ci right 6.079959e-01	k: 96896	n:160000
PLXNB2   160000 perm   52 sec   (3107 perm/sec)   p_kst 6.056000e-01   p_cons 2.856250e-03   p_joint 1.337500e-02

Joint ci ratio: 7.384452e-02	ci left: 1.570338e-02	ci right 1.691319e-02	k: 2771	n:170000
Cons ci ratio: 1.768316e-01	ci left: 2.627458e-03	ci right 3.142668e-03	k: 489	n:170000
KS ci ratio: 7.679544e-03	ci left: 6.028305e-01	ci right 6.074836e-01	k: 102877	n:170000
PLXNB2   170000 perm   55 sec   (3066 perm/sec)   p_kst 6.051588e-01   p_cons 2.876471e-03   p_joint 1.630000e-02

Joint ci ratio: 6.928624e-02	ci left: 1.686648e-02	ci right 1.808246e-02	k: 3144	n:180000
Cons ci ratio: 1.721532e-01	ci left: 2.624937e-03	ci right 3.124621e-03	k: 516	n:180000
KS ci ratio: 7.462101e-03	ci left: 6.029652e-01	ci right 6.074870e-01	k: 108941	n:180000
PLXNB2   180000 perm   59 sec   (3027 perm/sec)   p_kst 6.052278e-01   p_cons 2.866667e-03   p_joint 1.746667e-02

Joint ci ratio: 7.555791e-02	ci left: 1.344035e-02	ci right 1.450088e-02	k: 2653	n:190000
Cons ci ratio: 1.667549e-01	ci left: 2.658146e-03	ci right 3.146691e-03	k: 550	n:190000
KS ci ratio: 7.270862e-03	ci left: 6.025132e-01	ci right 6.069152e-01	k: 114896	n:190000
PLXNB2   190000 perm   63 sec   (2997 perm/sec)   p_kst 6.047158e-01   p_cons 2.894737e-03   p_joint 1.396316e-02

Joint ci ratio: 7.429039e-02	ci left: 1.321965e-02	ci right 1.424451e-02	k: 2745	n:200000
Cons ci ratio: 1.632397e-01	ci left: 2.640281e-03	ci right 3.114309e-03	k: 574	n:200000
KS ci ratio: 7.085365e-03	ci left: 6.026634e-01	ci right 6.069536e-01	k: 120962	n:200000
PLXNB2   200000 perm   68 sec   (2960 perm/sec)   p_kst 6.048100e-01   p_cons 2.870000e-03   p_joint 1.372500e-02

Joint ci ratio: 6.821638e-02	ci left: 1.495257e-02	ci right 1.601325e-02	k: 3250	n:210000
Cons ci ratio: 1.595377e-01	ci left: 2.637932e-03	ci right 3.099769e-03	k: 601	n:210000
KS ci ratio: 6.915306e-03	ci left: 6.026671e-01	ci right 6.068539e-01	k: 127000	n:210000
PLXNB2   210000 perm   72 sec   (2926 perm/sec)   p_kst 6.047619e-01   p_cons 2.861905e-03   p_joint 1.547619e-02

Joint ci ratio: 6.457795e-02	ci left: 1.594048e-02	ci right 1.700868e-02	k: 3623	n:220000
Cons ci ratio: 1.543633e-01	ci left: 2.697078e-03	ci right 3.152539e-03	k: 642	n:220000
KS ci ratio: 6.755775e-03	ci left: 6.027534e-01	ci right 6.068438e-01	k: 133056	n:220000
PLXNB2   220000 perm   76 sec   (2892 perm/sec)   p_kst 6.048000e-01   p_cons 2.918182e-03   p_joint 1.646818e-02

Joint ci ratio: 6.442109e-02	ci left: 1.533281e-02	ci right 1.635770e-02	k: 3643	n:230000
Cons ci ratio: 1.506590e-01	ci left: 2.713637e-03	ci right 3.159905e-03	k: 674	n:230000
KS ci ratio: 6.607160e-03	ci left: 6.028072e-01	ci right 6.068075e-01	k: 139106	n:230000
PLXNB2   230000 perm   80 sec   (2861 perm/sec)   p_kst 6.048087e-01   p_cons 2.930435e-03   p_joint 1.583913e-02

Joint ci ratio: 6.427276e-02	ci left: 1.477170e-02	ci right 1.575672e-02	k: 3662	n:240000
Cons ci ratio: 1.484783e-01	ci left: 2.680780e-03	ci right 3.114697e-03	k: 694	n:240000
KS ci ratio: 6.464727e-03	ci left: 6.030951e-01	ci right 6.070107e-01	k: 145213	n:240000
PLXNB2   240000 perm   85 sec   (2813 perm/sec)   p_kst 6.050542e-01   p_cons 2.891667e-03   p_joint 1.525833e-02

Joint ci ratio: 6.342834e-02	ci left: 1.457046e-02	ci right 1.552883e-02	k: 3761	n:250000
Cons ci ratio: 1.454743e-01	ci left: 2.685283e-03	ci right 3.110371e-03	k: 723	n:250000
KS ci ratio: 6.331068e-03	ci left: 6.033648e-01	ci right 6.072008e-01	k: 151321	n:250000
PLXNB2   250000 perm   90 sec   (2776 perm/sec)   p_kst 6.052840e-01   p_cons 2.892000e-03   p_joint 1.504400e-02

Joint ci ratio: 6.972286e-02	ci left: 1.159255e-02	ci right 1.243377e-02	k: 3122	n:260000
Cons ci ratio: 1.647360e-01	ci left: 1.994047e-03	ci right 2.355655e-03	k: 564	n:260000
KS ci ratio: 6.209116e-03	ci left: 6.033257e-01	ci right 6.070873e-01	k: 157354	n:260000
PLXNB2   260000 perm   95 sec   (2739 perm/sec)   p_kst 6.052077e-01   p_cons 2.169231e-03   p_joint 1.200769e-02

Joint ci ratio: 6.855997e-02	ci left: 1.155263e-02	ci right 1.237641e-02	k: 3229	n:270000
Cons ci ratio: 1.623137e-01	ci left: 1.980578e-03	ci right 2.333948e-03	k: 581	n:270000
KS ci ratio: 6.092579e-03	ci left: 6.033977e-01	ci right 6.070889e-01	k: 163416	n:270000
PLXNB2   270000 perm   100 sec   (2703 perm/sec)   p_kst 6.052444e-01   p_cons 2.151852e-03   p_joint 1.195926e-02

Joint ci ratio: 6.750458e-02	ci left: 1.149811e-02	ci right 1.230489e-02	k: 3331	n:280000
Cons ci ratio: 1.601292e-01	ci left: 1.964680e-03	ci right 2.310041e-03	k: 597	n:280000
KS ci ratio: 5.981697e-03	ci left: 6.035188e-01	ci right 6.071433e-01	k: 169493	n:280000
PLXNB2   280000 perm   105 sec   (2675 perm/sec)   p_kst 6.053321e-01   p_cons 2.132143e-03   p_joint 1.189643e-02

Joint ci ratio: 6.230616e-02	ci left: 1.304578e-02	ci right 1.388812e-02	k: 3904	n:290000
Cons ci ratio: 1.568824e-01	ci left: 1.979721e-03	ci right 2.320006e-03	k: 622	n:290000
KS ci ratio: 5.876614e-03	ci left: 6.036356e-01	ci right 6.071968e-01	k: 175571	n:290000
PLXNB2   290000 perm   110 sec   (2644 perm/sec)   p_kst 6.054172e-01   p_cons 2.144828e-03   p_joint 1.346207e-02

Joint ci ratio: 6.025866e-02	ci left: 1.349066e-02	ci right 1.433210e-02	k: 4172	n:300000
Cons ci ratio: 1.550289e-01	ci left: 1.961777e-03	ci right 2.294624e-03	k: 637	n:300000
KS ci ratio: 5.775953e-03	ci left: 6.038218e-01	ci right 6.073228e-01	k: 181672	n:300000
PLXNB2   300000 perm   114 sec   (2622 perm/sec)   p_kst 6.055733e-01   p_cons 2.123333e-03   p_joint 1.390667e-02

Joint ci ratio: 5.944747e-02	ci left: 1.342088e-02	ci right 1.424631e-02	k: 4287	n:310000
Cons ci ratio: 1.524230e-01	ci left: 1.966733e-03	ci right 2.294299e-03	k: 659	n:310000
KS ci ratio: 5.679411e-03	ci left: 6.040707e-01	ci right 6.075144e-01	k: 187796	n:310000
PLXNB2   310000 perm   120 sec   (2591 perm/sec)   p_kst 6.057935e-01   p_cons 2.125806e-03   p_joint 1.382903e-02

Joint ci ratio: 6.032918e-02	ci left: 1.262886e-02	ci right 1.341750e-02	k: 4166	n:320000
Cons ci ratio: 1.501651e-01	ci left: 1.965406e-03	ci right 2.287467e-03	k: 679	n:320000
KS ci ratio: 5.590659e-03	ci left: 6.040387e-01	ci right 6.074282e-01	k: 193835	n:320000
PLXNB2   320000 perm   125 sec   (2567 perm/sec)   p_kst 6.057344e-01   p_cons 2.121875e-03   p_joint 1.301875e-02

Joint ci ratio: 5.947977e-02	ci left: 1.260435e-02	ci right 1.338000e-02	k: 4286	n:330000
Cons ci ratio: 1.480046e-01	ci left: 1.964193e-03	ci right 2.281015e-03	k: 699	n:330000
KS ci ratio: 5.503567e-03	ci left: 6.042152e-01	ci right 6.075527e-01	k: 199942	n:330000
PLXNB2   330000 perm   130 sec   (2547 perm/sec)   p_kst 6.058848e-01   p_cons 2.118182e-03   p_joint 1.298788e-02

Joint ci ratio: 5.906713e-02	ci left: 1.241035e-02	ci right 1.316858e-02	k: 4347	n:340000
Cons ci ratio: 1.460365e-01	ci left: 1.960249e-03	ci right 2.271863e-03	k: 718	n:340000
KS ci ratio: 5.423760e-03	ci left: 6.040873e-01	ci right 6.073756e-01	k: 205949	n:340000
PLXNB2   340000 perm   135 sec   (2522 perm/sec)   p_kst 6.057324e-01   p_cons 2.111765e-03   p_joint 1.278529e-02

Joint ci ratio: 6.638925e-02	ci left: 9.535293e-03	ci right 1.019286e-02	k: 3451	n:350000
Cons ci ratio: 1.441448e-01	ci left: 1.956557e-03	ci right 2.263208e-03	k: 737	n:350000
KS ci ratio: 5.345023e-03	ci left: 6.041730e-01	ci right 6.074138e-01	k: 212028	n:350000
PLXNB2   350000 perm   140 sec   (2501 perm/sec)   p_kst 6.057943e-01   p_cons 2.105714e-03   p_joint 9.860000e-03

Joint ci ratio: 6.676063e-02	ci left: 9.169299e-03	ci right 9.805300e-03	k: 3414	n:360000
Cons ci ratio: 1.414844e-01	ci left: 1.977208e-03	ci right 2.280895e-03	k: 765	n:360000
KS ci ratio: 5.271857e-03	ci left: 6.040513e-01	ci right 6.072470e-01	k: 218034	n:360000
PLXNB2   360000 perm   145 sec   (2479 perm/sec)   p_kst 6.056500e-01   p_cons 2.125000e-03   p_joint 9.483333e-03

Joint ci ratio: 6.844798e-02	ci left: 8.485627e-03	ci right 9.089672e-03	k: 3250	n:370000
Cons ci ratio: 1.398514e-01	ci left: 1.970706e-03	ci right 2.269609e-03	k: 783	n:370000
KS ci ratio: 5.201555e-03	ci left: 6.039420e-01	ci right 6.070942e-01	k: 224042	n:370000
PLXNB2   370000 perm   151 sec   (2457 perm/sec)   p_kst 6.055189e-01   p_cons 2.116216e-03   p_joint 8.783784e-03

Joint ci ratio: 6.758081e-02	ci left: 8.479613e-03	ci right 9.075283e-03	k: 3334	n:380000
Cons ci ratio: 1.378438e-01	ci left: 1.977270e-03	ci right 2.272510e-03	k: 806	n:380000
KS ci ratio: 5.132408e-03	ci left: 6.039861e-01	ci right 6.070965e-01	k: 230106	n:380000
PLXNB2   380000 perm   156 sec   (2432 perm/sec)   p_kst 6.055421e-01   p_cons 2.121053e-03   p_joint 8.773684e-03

Joint ci ratio: 6.681483e-02	ci left: 8.456301e-03	ci right 9.043340e-03	k: 3411	n:390000
Cons ci ratio: 1.365814e-01	ci left: 1.963711e-03	ci right 2.254022e-03	k: 821	n:390000
KS ci ratio: 5.067661e-03	ci left: 6.038665e-01	ci right 6.069370e-01	k: 236107	n:390000
PLXNB2   390000 perm   162 sec   (2409 perm/sec)   p_kst 6.054026e-01   p_cons 2.105128e-03   p_joint 8.746154e-03

Joint ci ratio: 5.428170e-02	ci left: 1.252052e-02	ci right 1.322156e-02	k: 5147	n:400000
Cons ci ratio: 1.348695e-01	ci left: 1.965336e-03	ci right 2.251953e-03	k: 842	n:400000
KS ci ratio: 5.002659e-03	ci left: 6.040059e-01	ci right 6.070376e-01	k: 242209	n:400000
PLXNB2   400000 perm   168 sec   (2382 perm/sec)   p_kst 6.055225e-01   p_cons 2.105000e-03   p_joint 1.286750e-02

Joint ci ratio: 5.426365e-02	ci left: 1.222712e-02	ci right 1.291150e-02	k: 5152	n:410000
Cons ci ratio: 1.334527e-01	ci left: 1.959829e-03	ci right 2.242403e-03	k: 860	n:410000
KS ci ratio: 4.939994e-03	ci left: 6.041485e-01	ci right 6.071427e-01	k: 248315	n:410000
PLXNB2   410000 perm   174 sec   (2363 perm/sec)   p_kst 6.056463e-01   p_cons 2.097561e-03   p_joint 1.256585e-02

Joint ci ratio: 5.419739e-02	ci left: 1.196884e-02	ci right 1.263792e-02	k: 5166	n:420000
Cons ci ratio: 1.316303e-01	ci left: 1.968415e-03	ci right 2.248049e-03	k: 884	n:420000
KS ci ratio: 4.879333e-03	ci left: 6.043130e-01	ci right 6.072712e-01	k: 254433	n:420000
PLXNB2   420000 perm   180 sec   (2339 perm/sec)   p_kst 6.057929e-01   p_cons 2.104762e-03   p_joint 1.230000e-02

Joint ci ratio: 5.397835e-02	ci left: 1.178911e-02	ci right 1.244540e-02	k: 5209	n:430000
Cons ci ratio: 1.306024e-01	ci left: 1.954127e-03	ci right 2.229395e-03	k: 898	n:430000
KS ci ratio: 4.823060e-03	ci left: 6.042514e-01	ci right 6.071751e-01	k: 260457	n:430000
PLXNB2   430000 perm   185 sec   (2318 perm/sec)   p_kst 6.057140e-01   p_cons 2.088372e-03   p_joint 1.211395e-02

Joint ci ratio: 5.336226e-02	ci left: 1.179249e-02	ci right 1.244124e-02	k: 5330	n:440000
Cons ci ratio: 1.291032e-01	ci left: 1.955892e-03	ci right 2.228004e-03	k: 919	n:440000
KS ci ratio: 4.769212e-03	ci left: 6.041405e-01	ci right 6.070309e-01	k: 266458	n:440000
PLXNB2   440000 perm   191 sec   (2299 perm/sec)   p_kst 6.055864e-01   p_cons 2.088636e-03   p_joint 1.211364e-02

Joint ci ratio: 5.336954e-02	ci left: 1.153039e-02	ci right 1.216481e-02	k: 5330	n:450000
Cons ci ratio: 1.278589e-01	ci left: 1.951142e-03	ci right 2.219778e-03	k: 937	n:450000
KS ci ratio: 4.715569e-03	ci left: 6.041925e-01	ci right 6.070506e-01	k: 272530	n:450000
PLXNB2   450000 perm   198 sec   (2278 perm/sec)   p_kst 6.056222e-01   p_cons 2.082222e-03   p_joint 1.184444e-02

Joint ci ratio: 5.192271e-02	ci left: 1.192123e-02	ci right 1.255885e-02	k: 5629	n:460000
Cons ci ratio: 1.268495e-01	ci left: 1.940295e-03	ci right 2.205170e-03	k: 952	n:460000
KS ci ratio: 4.665331e-03	ci left: 6.040750e-01	ci right 6.069019e-01	k: 278525	n:460000
PLXNB2   460000 perm   204 sec   (2255 perm/sec)   p_kst 6.054891e-01   p_cons 2.069565e-03   p_joint 1.223696e-02

Joint ci ratio: 5.215977e-02	ci left: 1.156464e-02	ci right 1.218608e-02	k: 5580	n:470000
Cons ci ratio: 1.257335e-01	ci left: 1.934039e-03	ci right 2.195564e-03	k: 969	n:470000
KS ci ratio: 4.615945e-03	ci left: 6.040372e-01	ci right 6.068339e-01	k: 284555	n:470000
PLXNB2   470000 perm   210 sec   (2238 perm/sec)   p_kst 6.054362e-01   p_cons 2.061702e-03   p_joint 1.187234e-02

Joint ci ratio: 4.992023e-02	ci left: 1.236661e-02	ci right 1.300180e-02	k: 6087	n:480000
Cons ci ratio: 1.241434e-01	ci left: 1.944203e-03	ci right 2.203533e-03	k: 994	n:480000
KS ci ratio: 4.567557e-03	ci left: 6.040573e-01	ci right 6.068247e-01	k: 290612	n:480000
PLXNB2   480000 perm   216 sec   (2220 perm/sec)   p_kst 6.054417e-01   p_cons 2.070833e-03   p_joint 1.268125e-02

Joint ci ratio: 4.932721e-02	ci left: 1.241051e-02	ci right 1.304017e-02	k: 6234	n:490000
Cons ci ratio: 1.232799e-01	ci left: 1.932212e-03	ci right 2.188019e-03	k: 1008	n:490000
KS ci ratio: 4.520389e-03	ci left: 6.041054e-01	ci right 6.068444e-01	k: 296683	n:490000
PLXNB2   490000 perm   223 sec   (2201 perm/sec)   p_kst 6.054755e-01   p_cons 2.057143e-03   p_joint 1.272245e-02

Joint ci ratio: 4.804307e-02	ci left: 1.282421e-02	ci right 1.345745e-02	k: 6569	n:500000
Cons ci ratio: 1.218982e-01	ci left: 1.938157e-03	ci right 2.191668e-03	k: 1031	n:500000
KS ci ratio: 4.475346e-03	ci left: 6.040777e-01	ci right 6.067891e-01	k: 302717	n:500000
PLXNB2   500000 perm   230 sec   (2178 perm/sec)   p_kst 6.054340e-01   p_cons 2.062000e-03   p_joint 1.313800e-02

Joint ci ratio: 4.683306e-02	ci left: 1.323352e-02	ci right 1.387007e-02	k: 6910	n:510000
Cons ci ratio: 1.206191e-01	ci left: 1.941983e-03	ci right 2.193139e-03	k: 1053	n:510000
KS ci ratio: 4.432186e-03	ci left: 6.039903e-01	ci right 6.066752e-01	k: 308720	n:510000
PLXNB2   510000 perm   236 sec   (2161 perm/sec)   p_kst 6.053333e-01   p_cons 2.064706e-03   p_joint 1.354902e-02

Joint ci ratio: 4.687707e-02	ci left: 1.295808e-02	ci right 1.358198e-02	k: 6899	n:520000
Cons ci ratio: 1.195466e-01	ci left: 1.940078e-03	ci right 2.188599e-03	k: 1072	n:520000
KS ci ratio: 4.390287e-03	ci left: 6.039026e-01	ci right 6.065616e-01	k: 314721	n:520000
PLXNB2   520000 perm   242 sec   (2145 perm/sec)   p_kst 6.052327e-01   p_cons 2.061538e-03   p_joint 1.326731e-02

Joint ci ratio: 4.648196e-02	ci left: 1.293362e-02	ci right 1.355096e-02	k: 7017	n:530000
Cons ci ratio: 1.182313e-01	ci left: 1.947410e-03	ci right 2.193933e-03	k: 1096	n:530000
KS ci ratio: 4.349073e-03	ci left: 6.038712e-01	ci right 6.065050e-01	k: 320750	n:530000
PLXNB2   530000 perm   249 sec   (2126 perm/sec)   p_kst 6.051887e-01   p_cons 2.067925e-03   p_joint 1.323962e-02

Joint ci ratio: 4.677215e-02	ci left: 1.254031e-02	ci right 1.314271e-02	k: 6933	n:540000
Cons ci ratio: 1.165425e-01	ci left: 1.968867e-03	ci right 2.214302e-03	k: 1128	n:540000
KS ci ratio: 4.307395e-03	ci left: 6.040189e-01	ci right 6.066281e-01	k: 326875	n:540000
PLXNB2   540000 perm   256 sec   (2107 perm/sec)   p_kst 6.053241e-01   p_cons 2.088889e-03   p_joint 1.283889e-02

Joint ci ratio: 5.159702e-02	ci left: 1.011741e-02	ci right 1.065504e-02	k: 5711	n:550000
Cons ci ratio: 1.154735e-01	ci left: 1.970144e-03	ci right 2.213331e-03	k: 1149	n:550000
KS ci ratio: 4.269296e-03	ci left: 6.038922e-01	ci right 6.064776e-01	k: 332852	n:550000
PLXNB2   550000 perm   264 sec   (2087 perm/sec)   p_kst 6.051855e-01   p_cons 2.089091e-03   p_joint 1.038364e-02

Joint ci ratio: 5.116918e-02	ci left: 1.010596e-02	ci right 1.063841e-02	k: 5807	n:560000
Cons ci ratio: 1.146297e-01	ci left: 1.964446e-03	ci right 2.205038e-03	k: 1166	n:560000
KS ci ratio: 4.230244e-03	ci left: 6.039898e-01	ci right 6.065520e-01	k: 338952	n:560000
PLXNB2   560000 perm   271 sec   (2070 perm/sec)   p_kst 6.052714e-01   p_cons 2.082143e-03   p_joint 1.036964e-02

Joint ci ratio: 4.630054e-02	ci left: 1.213166e-02	ci right 1.270840e-02	k: 7078	n:570000
Cons ci ratio: 1.137080e-01	ci left: 1.962363e-03	ci right 2.200638e-03	k: 1185	n:570000
KS ci ratio: 4.194677e-03	ci left: 6.038068e-01	ci right 6.063466e-01	k: 344894	n:570000
PLXNB2   570000 perm   278 sec   (2050 perm/sec)   p_kst 6.050772e-01   p_cons 2.078947e-03   p_joint 1.241754e-02

Joint ci ratio: 4.391204e-02	ci left: 1.325574e-02	ci right 1.385258e-02	k: 7860	n:580000
Cons ci ratio: 1.126210e-01	ci left: 1.967062e-03	ci right 2.203473e-03	k: 1208	n:580000
KS ci ratio: 4.156991e-03	ci left: 6.039751e-01	ci right 6.064928e-01	k: 351036	n:580000
PLXNB2   580000 perm   285 sec   (2034 perm/sec)   p_kst 6.052345e-01   p_cons 2.082759e-03   p_joint 1.355172e-02

Joint ci ratio: 4.356465e-02	ci left: 1.324229e-02	ci right 1.383369e-02	k: 7986	n:590000
Cons ci ratio: 1.114740e-01	ci left: 1.974908e-03	ci right 2.209685e-03	k: 1233	n:590000
KS ci ratio: 4.121412e-03	ci left: 6.040090e-01	ci right 6.065052e-01	k: 357102	n:590000
PLXNB2   590000 perm   293 sec   (2014 perm/sec)   p_kst 6.052576e-01   p_cons 2.089831e-03   p_joint 1.353559e-02

Joint ci ratio: 4.314995e-02	ci left: 1.327547e-02	ci right 1.386257e-02	k: 8140	n:600000
Cons ci ratio: 1.102297e-01	ci left: 1.987366e-03	ci right 2.220816e-03	k: 1261	n:600000
KS ci ratio: 4.086845e-03	ci left: 6.040285e-01	ci right 6.065038e-01	k: 363160	n:600000
PLXNB2   600000 perm   300 sec   (1997 perm/sec)   p_kst 6.052667e-01   p_cons 2.101667e-03   p_joint 1.356667e-02

Joint ci ratio: 4.288599e-02	ci left: 1.322162e-02	ci right 1.380268e-02	k: 8241	n:610000
Cons ci ratio: 1.093666e-01	ci left: 1.986673e-03	ci right 2.218096e-03	k: 1281	n:610000
KS ci ratio: 4.053273e-03	ci left: 6.040311e-01	ci right 6.064860e-01	k: 369208	n:610000
PLXNB2   610000 perm   308 sec   (1978 perm/sec)   p_kst 6.052590e-01   p_cons 2.100000e-03   p_joint 1.350984e-02

Joint ci ratio: 4.256736e-02	ci left: 1.320623e-02	ci right 1.378220e-02	k: 8365	n:620000
Cons ci ratio: 1.086071e-01	ci left: 1.982870e-03	ci right 2.212144e-03	k: 1299	n:620000
KS ci ratio: 4.021451e-03	ci left: 6.039223e-01	ci right 6.063574e-01	k: 375187	n:620000
PLXNB2   620000 perm   316 sec   (1962 perm/sec)   p_kst 6.051403e-01   p_cons 2.095161e-03   p_joint 1.349194e-02

Joint ci ratio: 4.225321e-02	ci left: 1.319292e-02	ci right 1.376395e-02	k: 8490	n:630000
Cons ci ratio: 1.078632e-01	ci left: 1.979194e-03	ci right 2.206376e-03	k: 1317	n:630000
KS ci ratio: 3.989625e-03	ci left: 6.039059e-01	ci right 6.063217e-01	k: 381222	n:630000
PLXNB2   630000 perm   323 sec   (1948 perm/sec)   p_kst 6.051143e-01   p_cons 2.090476e-03   p_joint 1.347619e-02

Joint ci ratio: 4.302952e-02	ci left: 1.252602e-02	ci right 1.307840e-02	k: 8192	n:640000
Cons ci ratio: 1.068941e-01	ci left: 1.984762e-03	ci right 2.210408e-03	k: 1341	n:640000
KS ci ratio: 3.958309e-03	ci left: 6.039183e-01	ci right 6.063151e-01	k: 387275	n:640000
PLXNB2   640000 perm   331 sec   (1935 perm/sec)   p_kst 6.051172e-01   p_cons 2.095312e-03   p_joint 1.280000e-02

Joint ci ratio: 4.371988e-02	ci left: 1.194975e-02	ci right 1.248538e-02	k: 7940	n:650000
Cons ci ratio: 1.062237e-01	ci left: 1.979684e-03	ci right 2.203252e-03	k: 1358	n:650000
KS ci ratio: 3.928099e-03	ci left: 6.038842e-01	ci right 6.062625e-01	k: 393298	n:650000
PLXNB2   650000 perm   338 sec   (1920 perm/sec)   p_kst 6.050738e-01   p_cons 2.089231e-03   p_joint 1.221538e-02

Joint ci ratio: 4.337697e-02	ci left: 1.195753e-02	ci right 1.248919e-02	k: 8066	n:660000
Cons ci ratio: 1.052978e-01	ci left: 1.985091e-03	ci right 2.207195e-03	k: 1382	n:660000
KS ci ratio: 3.898731e-03	ci left: 6.038315e-01	ci right 6.061918e-01	k: 399308	n:660000
PLXNB2   660000 perm   346 sec   (1906 perm/sec)   p_kst 6.050121e-01   p_cons 2.093939e-03   p_joint 1.222121e-02

Joint ci ratio: 4.400639e-02	ci left: 1.144684e-02	ci right 1.196337e-02	k: 7841	n:670000
Cons ci ratio: 1.047318e-01	ci left: 1.977262e-03	ci right 2.197228e-03	k: 1397	n:670000
KS ci ratio: 3.869033e-03	ci left: 6.039014e-01	ci right 6.062439e-01	k: 405399	n:670000
PLXNB2   670000 perm   354 sec   (1892 perm/sec)   p_kst 6.050731e-01   p_cons 2.085075e-03   p_joint 1.170299e-02

Joint ci ratio: 4.385771e-02	ci left: 1.135703e-02	ci right 1.186773e-02	k: 7895	n:680000
Cons ci ratio: 1.039173e-01	ci left: 1.979694e-03	ci right 2.198112e-03	k: 1419	n:680000
KS ci ratio: 3.840369e-03	ci left: 6.039237e-01	ci right 6.062489e-01	k: 411459	n:680000
PLXNB2   680000 perm   362 sec   (1878 perm/sec)   p_kst 6.050868e-01   p_cons 2.086765e-03   p_joint 1.161029e-02

Joint ci ratio: 4.383338e-02	ci left: 1.120675e-02	ci right 1.171041e-02	k: 7905	n:690000
Cons ci ratio: 1.033010e-01	ci left: 1.975002e-03	ci right 2.191532e-03	k: 1436	n:690000
KS ci ratio: 3.812530e-03	ci left: 6.039208e-01	ci right 6.062291e-01	k: 417502	n:690000
PLXNB2   690000 perm   370 sec   (1865 perm/sec)   p_kst 6.050754e-01   p_cons 2.081159e-03   p_joint 1.145652e-02

Joint ci ratio: 4.352349e-02	ci left: 1.120632e-02	ci right 1.170631e-02	k: 8018	n:700000
Cons ci ratio: 1.024840e-01	ci left: 1.978799e-03	ci right 2.193926e-03	k: 1459	n:700000
KS ci ratio: 3.785355e-03	ci left: 6.039094e-01	ci right 6.062011e-01	k: 423539	n:700000
PLXNB2   700000 perm   378 sec   (1853 perm/sec)   p_kst 6.050557e-01   p_cons 2.084286e-03   p_joint 1.145429e-02

Joint ci ratio: 4.290102e-02	ci left: 1.137313e-02	ci right 1.187312e-02	k: 8251	n:710000
Cons ci ratio: 1.017204e-01	ci left: 1.981123e-03	ci right 2.194803e-03	k: 1481	n:710000
KS ci ratio: 3.757003e-03	ci left: 6.041211e-01	ci right 6.063964e-01	k: 429734	n:710000
PLXNB2   710000 perm   386 sec   (1838 perm/sec)   p_kst 6.052592e-01   p_cons 2.085915e-03   p_joint 1.162113e-02

Joint ci ratio: 4.332877e-02	ci left: 1.099667e-02	ci right 1.148505e-02	k: 8092	n:720000
Cons ci ratio: 1.009736e-01	ci left: 1.983389e-03	ci right 2.195649e-03	k: 1503	n:720000
KS ci ratio: 3.731522e-03	ci left: 6.040392e-01	ci right 6.062988e-01	k: 435722	n:720000
PLXNB2   720000 perm   394 sec   (1826 perm/sec)   p_kst 6.051694e-01   p_cons 2.087500e-03   p_joint 1.123889e-02

Joint ci ratio: 4.331321e-02	ci left: 1.085550e-02	ci right 1.133744e-02	k: 8099	n:730000
Cons ci ratio: 1.002101e-01	ci left: 1.986934e-03	ci right 2.197871e-03	k: 1526	n:730000
KS ci ratio: 3.706627e-03	ci left: 6.039501e-01	ci right 6.061942e-01	k: 441703	n:730000
PLXNB2   730000 perm   403 sec   (1812 perm/sec)   p_kst 6.050726e-01   p_cons 2.090411e-03   p_joint 1.109452e-02

Joint ci ratio: 4.305924e-02	ci left: 1.083713e-02	ci right 1.131536e-02	k: 8195	n:740000
Cons ci ratio: 9.956030e-02	ci left: 1.986435e-03	ci right 2.195872e-03	k: 1546	n:740000
KS ci ratio: 3.681900e-03	ci left: 6.039054e-01	ci right 6.061343e-01	k: 447715	n:740000
PLXNB2   740000 perm   411 sec   (1798 perm/sec)   p_kst 6.050203e-01   p_cons 2.089189e-03   p_joint 1.107432e-02

Outputting figure to mutsig2_images.part000000000133/PLXNB2.3_5657_740000_0.60502_0.0020892_0.011074.png
                gene_name: PLXNB2
               theta_stop: 0.100 
                    nperm: 740000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.0021 
      ci_cons_bounds_left: 0.0020 
     ci_cons_bounds_right: 0.0022 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.011 

Current progress: 67 percent done.
PNLIPRP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.420057e-01	ci left: 6.575174e-02	ci right 7.590000e-02	k: 707	n:10000
Cons ci ratio: 1.889386e-02	ci left: 8.036941e-01	ci right 8.191241e-01	k: 8115	n:10000
KS ci ratio: 4.284655e-01	ci left: 6.526864e-03	ci right 1.016828e-02	k: 82	n:10000
PNLIPRP2   10000 perm   3 sec   (3848 perm/sec)   p_kst 8.200000e-03   p_cons 8.115000e-01   p_joint 7.070000e-02

Joint ci ratio: 1.109456e-01	ci left: 5.548160e-02	ci right 6.204742e-02	k: 1174	n:20000
Cons ci ratio: 1.340762e-02	ci left: 8.048975e-01	ci right 8.158121e-01	k: 16208	n:20000
KS ci ratio: 2.916733e-01	ci left: 7.645156e-03	ci right 1.030055e-02	k: 178	n:20000
PNLIPRP2   20000 perm   5 sec   (4147 perm/sec)   p_kst 8.900000e-03   p_cons 8.104000e-01   p_joint 5.870000e-02

Joint ci ratio: 9.676305e-02	ci left: 4.935155e-02	ci right 5.440235e-02	k: 1555	n:30000
Cons ci ratio: 1.092937e-02	ci left: 8.064222e-01	ci right 8.153176e-01	k: 24327	n:30000
KS ci ratio: 2.429929e-01	ci left: 7.554950e-03	ci right 9.675195e-03	k: 257	n:30000
PNLIPRP2   30000 perm   7 sec   (4259 perm/sec)   p_kst 8.566667e-03   p_cons 8.109000e-01   p_joint 5.183333e-02

Joint ci ratio: 7.267602e-02	ci left: 6.533066e-02	ci right 7.028230e-02	k: 2711	n:40000
Cons ci ratio: 9.415665e-03	ci left: 8.086399e-01	ci right 8.163147e-01	k: 32500	n:40000
KS ci ratio: 2.101310e-01	ci left: 7.718433e-03	ci right 9.553971e-03	k: 344	n:40000
PNLIPRP2   40000 perm   9 sec   (4322 perm/sec)   p_kst 8.600000e-03   p_cons 8.125000e-01   p_joint 6.777500e-02

Joint ci ratio: 4.909612e-02	ci left: 1.102969e-01	ci right 1.158681e-01	k: 5653	n:50000
Cons ci ratio: 8.416076e-03	ci left: 8.092521e-01	ci right 8.161115e-01	k: 40635	n:50000
KS ci ratio: 1.841619e-01	ci left: 8.152640e-03	ci right 9.825115e-03	k: 448	n:50000
PNLIPRP2   50000 perm   11 sec   (4362 perm/sec)   p_kst 8.960000e-03   p_cons 8.127000e-01   p_joint 1.130600e-01

Joint ci ratio: 4.472118e-02	ci left: 1.109723e-01	ci right 1.160652e-01	k: 6810	n:60000
Cons ci ratio: 7.710102e-03	ci left: 8.084646e-01	ci right 8.147386e-01	k: 48697	n:60000
KS ci ratio: 1.674590e-01	ci left: 8.291769e-03	ci right 9.822951e-03	k: 542	n:60000
PNLIPRP2   60000 perm   14 sec   (4337 perm/sec)   p_kst 9.033333e-03   p_cons 8.116167e-01   p_joint 1.135000e-01

Joint ci ratio: 4.141017e-02	ci left: 1.111308e-01	ci right 1.158442e-01	k: 7943	n:70000
Cons ci ratio: 7.152882e-03	ci left: 8.080653e-01	ci right 8.138803e-01	k: 56769	n:70000
KS ci ratio: 1.546067e-01	ci left: 8.396074e-03	ci right 9.816494e-03	k: 636	n:70000
PNLIPRP2   70000 perm   16 sec   (4316 perm/sec)   p_kst 9.085714e-03   p_cons 8.109857e-01   p_joint 1.134714e-01

Joint ci ratio: 3.871851e-02	ci left: 1.113717e-01	ci right 1.157814e-01	k: 9085	n:80000
Cons ci ratio: 6.666573e-03	ci left: 8.093756e-01	ci right 8.148018e-01	k: 64968	n:80000
KS ci ratio: 1.432379e-01	ci left: 8.610279e-03	ci right 9.950670e-03	k: 741	n:80000
PNLIPRP2   80000 perm   19 sec   (4268 perm/sec)   p_kst 9.262500e-03   p_cons 8.121000e-01   p_joint 1.135625e-01

Joint ci ratio: 3.643135e-02	ci left: 1.118975e-01	ci right 1.160607e-01	k: 10257	n:90000
Cons ci ratio: 6.293995e-03	ci left: 8.091079e-01	ci right 8.142275e-01	k: 73051	n:90000
KS ci ratio: 1.356006e-01	ci left: 8.575811e-03	ci right 9.833906e-03	k: 827	n:90000
PNLIPRP2   90000 perm   21 sec   (4212 perm/sec)   p_kst 9.188889e-03   p_cons 8.116778e-01   p_joint 1.139667e-01

Joint ci ratio: 3.455460e-02	ci left: 1.120464e-01	ci right 1.159961e-01	k: 11401	n:100000
Cons ci ratio: 5.971547e-03	ci left: 8.092126e-01	ci right 8.140693e-01	k: 81165	n:100000
KS ci ratio: 1.277343e-01	ci left: 8.733709e-03	ci right 9.935009e-03	k: 932	n:100000
PNLIPRP2   100000 perm   24 sec   (4144 perm/sec)   p_kst 9.320000e-03   p_cons 8.116500e-01   p_joint 1.140100e-01

Joint ci ratio: 3.300180e-02	ci left: 1.118026e-01	ci right 1.155632e-01	k: 12504	n:110000
Cons ci ratio: 5.693220e-03	ci left: 8.093495e-01	ci right 8.139795e-01	k: 89284	n:110000
KS ci ratio: 1.219881e-01	ci left: 8.732369e-03	ci right 9.875546e-03	k: 1022	n:110000
PNLIPRP2   110000 perm   27 sec   (4096 perm/sec)   p_kst 9.290909e-03   p_cons 8.116727e-01   p_joint 1.136727e-01

Joint ci ratio: 3.153143e-02	ci left: 1.122981e-01	ci right 1.159039e-01	k: 13691	n:120000
Cons ci ratio: 5.449018e-03	ci left: 8.095517e-01	ci right 8.139833e-01	k: 97413	n:120000
KS ci ratio: 1.164791e-01	ci left: 8.805091e-03	ci right 9.902150e-03	k: 1121	n:120000
PNLIPRP2   120000 perm   30 sec   (4054 perm/sec)   p_kst 9.341667e-03   p_cons 8.117750e-01   p_joint 1.140917e-01

Joint ci ratio: 2.935736e-02	ci left: 1.188343e-01	ci right 1.223826e-01	k: 15678	n:130000
Cons ci ratio: 5.236662e-03	ci left: 8.095563e-01	ci right 8.138144e-01	k: 105520	n:130000
KS ci ratio: 1.124006e-01	ci left: 8.747949e-03	ci right 9.797192e-03	k: 1204	n:130000
PNLIPRP2   130000 perm   32 sec   (4006 perm/sec)   p_kst 9.261538e-03   p_cons 8.116923e-01   p_joint 1.206000e-01

Joint ci ratio: 3.022758e-02	ci left: 1.056195e-01	ci right 1.088682e-01	k: 15013	n:140000
Cons ci ratio: 5.055004e-03	ci left: 8.090970e-01	ci right 8.132044e-01	k: 113562	n:140000
KS ci ratio: 1.075488e-01	ci left: 8.894185e-03	ci right 9.912004e-03	k: 1315	n:140000
PNLIPRP2   140000 perm   35 sec   (3953 perm/sec)   p_kst 9.392857e-03   p_cons 8.111571e-01   p_joint 1.072357e-01

Joint ci ratio: 2.927138e-02	ci left: 1.052280e-01	ci right 1.083605e-01	k: 16018	n:150000
Cons ci ratio: 4.893113e-03	ci left: 8.085676e-01	ci right 8.125404e-01	k: 121584	n:150000
KS ci ratio: 1.040512e-01	ci left: 8.885361e-03	ci right 9.867077e-03	k: 1405	n:150000
PNLIPRP2   150000 perm   39 sec   (3889 perm/sec)   p_kst 9.366667e-03   p_cons 8.105600e-01   p_joint 1.067867e-01

Joint ci ratio: 2.829089e-02	ci left: 1.056198e-01	ci right 1.086569e-01	k: 17141	n:160000
Cons ci ratio: 4.743577e-03	ci left: 8.082510e-01	ci right 8.121003e-01	k: 129629	n:160000
KS ci ratio: 1.005353e-01	ci left: 8.939050e-03	ci right 9.891354e-03	k: 1505	n:160000
PNLIPRP2   160000 perm   42 sec   (3842 perm/sec)   p_kst 9.406250e-03   p_cons 8.101812e-01   p_joint 1.071312e-01

Joint ci ratio: 1.905927e-02	ci left: 1.973505e-01	ci right 2.011539e-01	k: 33872	n:170000
Cons ci ratio: 4.603776e-03	ci left: 8.081860e-01	ci right 8.119211e-01	k: 137710	n:170000
KS ci ratio: 9.790878e-02	ci left: 8.883594e-03	ci right 9.803844e-03	k: 1587	n:170000
PNLIPRP2   170000 perm   45 sec   (3764 perm/sec)   p_kst 9.335294e-03   p_cons 8.100588e-01   p_joint 1.992471e-01

Outputting figure to mutsig2_images.part000000000133/PNLIPRP2.2_1464_170000_0.0093353_0.81006_0.19925.png
                gene_name: PNLIPRP2
               theta_stop: 0.098 
                    nperm: 170000 
                     p_ks: 0.0093 
        ci_ks_bounds_left: 0.0089 
       ci_ks_bounds_right: 0.0098 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.20 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000133
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 133 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1652>
Subject: Job 9877947: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1652>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000134> was used as the working directory.
Started at Fri Oct  5 22:51:42 2012
Results reported at Sat Oct  6 02:01:57 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000134.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000134.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 134  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000134.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  11414.96 sec.
    Max Memory :      2028 MB
    Max Swap   :      4771 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
134
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 134
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 134: processing genes 12060 - 12150
Calculating significance of each gene.
Using projection method.
12060	PNMA3	1
12061	PNMA5	1.409624e-01
12062	PNMAL1	1.167556e-01
12063	PNMAL2	1
12064	PNMT	1
12065	PNN	1
12066	PNO1	1
12067	PNOC	1
12068	PNP	1
12069	PNPLA1	1
12070	PNPLA2	1
12071	PNPLA3	1
12072	PNPLA4	1
12073	PNPLA5	1
12074	PNPLA6	1
12075	PNPLA7	1
12076	PNPLA8	1
12077	PNPO	1
12078	PNPT1	1
12079	PNRC1	1
12080	POC1A	8.734429e-02
12081	POC1B	1
12082	POC5	1
12083	PODN	1
12084	PODNL1	1
12085	PODXL	3.427794e-02
12086	PODXL2	1
12087	POF1B	6.132771e-02
12088	POFUT1	1
12089	POFUT2	1
12090	POGK	1
12091	POGZ	1
12092	POLA1	1
12093	POLA2	1
12094	POLB	1
12095	POLD1	2.801860e-01
12096	POLD2	1
12097	POLD3	1
12098	POLD4	1
12099	POLDIP2	1
12100	POLDIP3	1
12101	POLE	1
12102	POLE2	1
12103	POLE3	1
12104	POLE4	1
12105	POLG	1
12106	POLG2	1
12107	POLH	1.332509e-01
12108	POLI	5.524828e-02
12109	POLK	1
12110	POLL	1
12111	POLM	1
12112	POLN	1
12113	POLQ	1
12114	POLR1A	1
12115	POLR1B	1
12116	POLR1C	1
12117	POLR1D	1
12118	POLR1E	1
12119	POLR2A	1
12120	POLR2B	1
12121	POLR2C	1
12122	POLR2D	1
12123	POLR2E	1
12124	POLR2F	1
12125	POLR2G	1
12126	POLR2H	1
12127	POLR2I	1
12128	POLR2J	1
12129	POLR2K	1
12130	POLR2L	1
12131	POLR3A	1
12132	POLR3B	1
12133	POLR3C	1
12134	POLR3D	1
12135	POLR3E	1
12136	POLR3F	1
12137	POLR3G	1
12138	POLR3GL	1
12139	POLR3H	1
12140	POLR3K	1
12141	POLRMT	1
12142	POM121	3.741406e-03
12143	POM121C	1.095100e-01
12144	POM121L12	1
12145	POMC	1
12146	POMGNT1	1
12147	POMP	1
12148	POMT1	1
12149	POMT2	1
12150	POMZP3	1
Done

Running MutSig 2:
Scatter job 134: processing genes 12060 - 12150
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
POM121
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 5.213117e-02	ci left: 3.516775e-01	ci right 3.706035e-01	k: 3611	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
POM121   10000 perm   2 sec   (5126 perm/sec)   p_kst 1.000000e-04   p_cons 3.611000e-01   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 3.896161e-02	ci left: 3.294531e-01	ci right 3.425946e-01	k: 6720	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
POM121   20000 perm   7 sec   (2988 perm/sec)   p_kst 5.000000e-05   p_cons 3.360000e-01   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 3.201147e-02	ci left: 3.278991e-01	ci right 3.385999e-01	k: 9997	n:30000
KS ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
POM121   30000 perm   9 sec   (3316 perm/sec)   p_kst 3.333333e-05   p_cons 3.332333e-01   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 2.775032e-02	ci left: 3.281819e-01	ci right 3.374423e-01	k: 13312	n:40000
KS ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
POM121   40000 perm   11 sec   (3541 perm/sec)   p_kst 2.500000e-05   p_cons 3.328000e-01   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 2.480751e-02	ci left: 3.289087e-01	ci right 3.371907e-01	k: 16652	n:50000
KS ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
POM121   50000 perm   14 sec   (3635 perm/sec)   p_kst 2.000000e-05   p_cons 3.330400e-01   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 2.270873e-02	ci left: 3.280489e-01	ci right 3.356007e-01	k: 19909	n:60000
KS ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
POM121   60000 perm   16 sec   (3686 perm/sec)   p_kst 1.666667e-05   p_cons 3.318167e-01   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 2.106649e-02	ci left: 3.274427e-01	ci right 3.344285e-01	k: 23165	n:70000
KS ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
POM121   70000 perm   19 sec   (3685 perm/sec)   p_kst 1.428571e-05   p_cons 3.309286e-01   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 1.974234e-02	ci left: 3.268538e-01	ci right 3.333835e-01	k: 26409	n:80000
KS ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
POM121   80000 perm   22 sec   (3685 perm/sec)   p_kst 1.250000e-05   p_cons 3.301125e-01   p_joint 0

Joint ci ratio: 5.101704e-01	ci left: 4.893889e-04	ci right 8.330153e-04	k: 58	n:90000
Cons ci ratio: 1.860169e-02	ci left: 3.273159e-01	ci right 3.334728e-01	k: 29735	n:90000
KS ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
POM121   90000 perm   24 sec   (3677 perm/sec)   p_kst 1.111111e-05   p_cons 3.303889e-01   p_joint 6.444444e-04

Joint ci ratio: 4.937155e-01	ci left: 4.753825e-04	ci right 7.947425e-04	k: 62	n:100000
Cons ci ratio: 1.762122e-02	ci left: 3.281233e-01	ci right 3.339665e-01	k: 33104	n:100000
KS ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
POM121   100000 perm   27 sec   (3647 perm/sec)   p_kst 1.000000e-05   p_cons 3.310400e-01   p_joint 6.200000e-04

Joint ci ratio: 4.860703e-01	ci left: 4.480988e-04	ci right 7.429090e-04	k: 64	n:110000
Cons ci ratio: 1.679583e-02	ci left: 3.284005e-01	ci right 3.339720e-01	k: 36430	n:110000
KS ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
POM121   110000 perm   30 sec   (3619 perm/sec)   p_kst 9.090909e-06   p_cons 3.311818e-01   p_joint 5.818182e-04

Joint ci ratio: 4.860824e-01	ci left: 4.107551e-04	ci right 6.810045e-04	k: 64	n:120000
Cons ci ratio: 1.609378e-02	ci left: 3.281628e-01	ci right 3.334953e-01	k: 39699	n:120000
KS ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
POM121   120000 perm   34 sec   (3580 perm/sec)   p_kst 8.333333e-06   p_cons 3.308250e-01   p_joint 5.333333e-04

Joint ci ratio: 5.191008e-01	ci left: 3.254143e-04	ci right 5.593537e-04	k: 56	n:130000
Cons ci ratio: 1.546249e-02	ci left: 3.282654e-01	ci right 3.333883e-01	k: 43007	n:130000
KS ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
POM121   130000 perm   37 sec   (3539 perm/sec)   p_kst 7.692308e-06   p_cons 3.308231e-01   p_joint 4.307692e-04

Joint ci ratio: 5.017934e-01	ci left: 3.270606e-04	ci right 5.516224e-04	k: 60	n:140000
Cons ci ratio: 1.489145e-02	ci left: 3.286134e-01	ci right 3.335507e-01	k: 46351	n:140000
KS ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
POM121   140000 perm   40 sec   (3499 perm/sec)   p_kst 7.142857e-06   p_cons 3.310786e-01   p_joint 4.285714e-04

Joint ci ratio: 5.146200e-01	ci left: 2.878206e-04	ci right 4.923064e-04	k: 57	n:150000
Cons ci ratio: 1.439710e-02	ci left: 3.283724e-01	ci right 3.331409e-01	k: 49613	n:150000
KS ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
POM121   150000 perm   43 sec   (3470 perm/sec)   p_kst 6.666667e-06   p_cons 3.307533e-01   p_joint 3.800000e-04

Joint ci ratio: 3.919976e+00	ci left: 0	ci right 2.305523e-05	k: 0	n:160000
Cons ci ratio: 1.392235e-02	ci left: 3.290061e-01	ci right 3.336250e-01	k: 53010	n:160000
KS ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
POM121   160000 perm   46 sec   (3442 perm/sec)   p_kst 6.250000e-06   p_cons 3.313125e-01   p_joint 0

Joint ci ratio: 3.919977e+00	ci left: 0	ci right 2.169906e-05	k: 0	n:170000
Cons ci ratio: 1.349828e-02	ci left: 3.293503e-01	ci right 3.338320e-01	k: 56370	n:170000
KS ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
POM121   170000 perm   50 sec   (3419 perm/sec)   p_kst 5.882353e-06   p_cons 3.315882e-01   p_joint 0

Joint ci ratio: 3.919978e+00	ci left: 0	ci right 2.049356e-05	k: 0	n:180000
Cons ci ratio: 1.252644e-02	ci left: 3.501428e-01	ci right 3.545620e-01	k: 63423	n:180000
KS ci ratio: 2.771835e+00	ci left: 1.406545e-07	ci right 3.095318e-05	k: 1	n:180000
POM121   180000 perm   53 sec   (3388 perm/sec)   p_kst 5.555556e-06   p_cons 3.523500e-01   p_joint 0

Joint ci ratio: 5.191374e-01	ci left: 2.226485e-04	ci right 3.827235e-04	k: 56	n:190000
Cons ci ratio: 1.218343e-02	ci left: 3.505354e-01	ci right 3.548375e-01	k: 67010	n:190000
KS ci ratio: 2.771837e+00	ci left: 1.332516e-07	ci right 2.932409e-05	k: 1	n:190000
POM121   190000 perm   57 sec   (3362 perm/sec)   p_kst 5.263158e-06   p_cons 3.526842e-01   p_joint 2.947368e-04

Joint ci ratio: 5.488384e-01	ci left: 1.855603e-04	ci right 3.295807e-04	k: 50	n:200000
Cons ci ratio: 1.188390e-02	ci left: 3.502461e-01	ci right 3.544382e-01	k: 70468	n:200000
KS ci ratio: 2.771838e+00	ci left: 1.265890e-07	ci right 2.785790e-05	k: 1	n:200000
POM121   200000 perm   60 sec   (3334 perm/sec)   p_kst 5.000000e-06   p_cons 3.523400e-01   p_joint 2.500000e-04

Joint ci ratio: 5.333746e-01	ci left: 1.890562e-04	ci right 3.301077e-04	k: 53	n:210000
Cons ci ratio: 1.159211e-02	ci left: 3.505087e-01	ci right 3.546002e-01	k: 74036	n:210000
KS ci ratio: 2.771839e+00	ci left: 1.205610e-07	ci right 2.653135e-05	k: 1	n:210000
POM121   210000 perm   64 sec   (3307 perm/sec)   p_kst 4.761905e-06   p_cons 3.525524e-01   p_joint 2.523810e-04

Joint ci ratio: 5.333777e-01	ci left: 1.804625e-04	ci right 3.151033e-04	k: 53	n:220000
Cons ci ratio: 1.132193e-02	ci left: 3.507031e-01	ci right 3.547008e-01	k: 77594	n:220000
KS ci ratio: 2.771840e+00	ci left: 1.150809e-07	ci right 2.532539e-05	k: 1	n:220000
POM121   220000 perm   67 sec   (3267 perm/sec)   p_kst 4.545455e-06   p_cons 3.527000e-01   p_joint 2.409091e-04

Joint ci ratio: 5.543103e-01	ci left: 1.576148e-04	ci right 2.816451e-04	k: 49	n:230000
Cons ci ratio: 1.106117e-02	ci left: 3.512377e-01	ci right 3.551487e-01	k: 81234	n:230000
KS ci ratio: 2.771841e+00	ci left: 1.100774e-07	ci right 2.422430e-05	k: 1	n:230000
POM121   230000 perm   71 sec   (3224 perm/sec)   p_kst 4.347826e-06   p_cons 3.531913e-01   p_joint 2.130435e-04

Joint ci ratio: 5.435462e-01	ci left: 1.582242e-04	ci right 2.793889e-04	k: 51	n:240000
Cons ci ratio: 1.083054e-02	ci left: 3.511834e-01	ci right 3.550118e-01	k: 84743	n:240000
KS ci ratio: 2.771841e+00	ci left: 1.054909e-07	ci right 2.321496e-05	k: 1	n:240000
POM121   240000 perm   75 sec   (3195 perm/sec)   p_kst 4.166667e-06   p_cons 3.530958e-01   p_joint 2.125000e-04

Joint ci ratio: 5.285135e-01	ci left: 1.622699e-04	ci right 2.818239e-04	k: 54	n:250000
Cons ci ratio: 1.061479e-02	ci left: 3.510904e-01	ci right 3.548410e-01	k: 88241	n:250000
KS ci ratio: 2.771842e+00	ci left: 1.012712e-07	ci right 2.228637e-05	k: 1	n:250000
POM121   250000 perm   79 sec   (3158 perm/sec)   p_kst 4.000000e-06   p_cons 3.529640e-01   p_joint 2.160000e-04

Joint ci ratio: 5.102816e-01	ci left: 1.693959e-04	ci right 2.883692e-04	k: 58	n:260000
Cons ci ratio: 1.041371e-02	ci left: 3.509054e-01	ci right 3.545825e-01	k: 91713	n:260000
KS ci ratio: 2.771843e+00	ci left: 9.737618e-08	ci right 2.142921e-05	k: 1	n:260000
POM121   260000 perm   83 sec   (3120 perm/sec)   p_kst 3.846154e-06   p_cons 3.527423e-01   p_joint 2.230769e-04

Joint ci ratio: 7.407706e-01	ci left: 6.590163e-05	ci right 1.454914e-04	k: 27	n:270000
Cons ci ratio: 1.021933e-02	ci left: 3.509271e-01	ci right 3.545354e-01	k: 95237	n:270000
KS ci ratio: 2.771843e+00	ci left: 9.376965e-08	ci right 2.063554e-05	k: 1	n:270000
POM121   270000 perm   88 sec   (3073 perm/sec)   p_kst 3.703704e-06   p_cons 3.527296e-01   p_joint 1.000000e-04

Joint ci ratio: 7.278867e-01	ci left: 6.645027e-05	ci right 1.445246e-04	k: 28	n:280000
Cons ci ratio: 1.004102e-02	ci left: 3.506945e-01	ci right 3.542371e-01	k: 98690	n:280000
KS ci ratio: 2.771844e+00	ci left: 9.042074e-08	ci right 1.989856e-05	k: 1	n:280000
POM121   280000 perm   93 sec   (3021 perm/sec)   p_kst 3.571429e-06   p_cons 3.524643e-01   p_joint 1.000000e-04

Joint ci ratio: 7.156526e-01	ci left: 6.697256e-05	ci right 1.436135e-04	k: 29	n:290000
Cons ci ratio: 9.863380e-03	ci left: 3.508643e-01	ci right 3.543456e-01	k: 102255	n:290000
KS ci ratio: 2.771844e+00	ci left: 8.730278e-08	ci right 1.921241e-05	k: 1	n:290000
POM121   290000 perm   97 sec   (2991 perm/sec)   p_kst 3.448276e-06   p_cons 3.526034e-01   p_joint 1.000000e-04

Joint ci ratio: 6.929265e-01	ci left: 7.021103e-05	ci right 1.466702e-04	k: 31	n:300000
Cons ci ratio: 9.696186e-03	ci left: 3.509600e-01	ci right 3.543828e-01	k: 105801	n:300000
KS ci ratio: 2.771845e+00	ci left: 8.439269e-08	ci right 1.857200e-05	k: 1	n:300000
POM121   300000 perm   101 sec   (2962 perm/sec)   p_kst 3.333333e-06   p_cons 3.526700e-01   p_joint 1.033333e-04

Joint ci ratio: 6.929278e-01	ci left: 6.794613e-05	ci right 1.419390e-04	k: 31	n:310000
Cons ci ratio: 9.541260e-03	ci left: 3.508567e-01	ci right 3.542235e-01	k: 109287	n:310000
KS ci ratio: 2.771845e+00	ci left: 8.167035e-08	ci right 1.797291e-05	k: 1	n:310000
POM121   310000 perm   106 sec   (2926 perm/sec)   p_kst 3.225806e-06   p_cons 3.525387e-01   p_joint 1.000000e-04

Joint ci ratio: 6.722377e-01	ci left: 7.098753e-05	ci right 1.448228e-04	k: 33	n:320000
Cons ci ratio: 9.393400e-03	ci left: 3.507665e-01	ci right 3.540800e-01	k: 112775	n:320000
KS ci ratio: 2.771846e+00	ci left: 7.911815e-08	ci right 1.741126e-05	k: 1	n:320000
POM121   320000 perm   110 sec   (2896 perm/sec)   p_kst 3.125000e-06   p_cons 3.524219e-01   p_joint 1.031250e-04

Joint ci ratio: 7.687438e-01	ci left: 4.902689e-05	ci right 1.118311e-04	k: 25	n:330000
Cons ci ratio: 9.249628e-03	ci left: 3.508092e-01	ci right 3.540721e-01	k: 116305	n:330000
KS ci ratio: 2.771846e+00	ci left: 7.672063e-08	ci right 1.688365e-05	k: 1	n:330000
POM121   330000 perm   115 sec   (2863 perm/sec)   p_kst 3.030303e-06   p_cons 3.524394e-01   p_joint 7.575758e-05

Joint ci ratio: 7.543733e-01	ci left: 4.995372e-05	ci right 1.120451e-04	k: 26	n:340000
Cons ci ratio: 9.110031e-03	ci left: 3.509615e-01	ci right 3.541763e-01	k: 119873	n:340000
KS ci ratio: 2.771846e+00	ci left: 7.446414e-08	ci right 1.638708e-05	k: 1	n:340000
POM121   340000 perm   120 sec   (2834 perm/sec)   p_kst 2.941176e-06   p_cons 3.525676e-01   p_joint 7.647059e-05

Joint ci ratio: 7.407797e-01	ci left: 5.083822e-05	ci right 1.122368e-04	k: 27	n:350000
Cons ci ratio: 8.977692e-03	ci left: 3.510483e-01	ci right 3.542170e-01	k: 123421	n:350000
KS ci ratio: 2.771847e+00	ci left: 7.233659e-08	ci right 1.591888e-05	k: 1	n:350000
POM121   350000 perm   126 sec   (2787 perm/sec)   p_kst 2.857143e-06   p_cons 3.526314e-01   p_joint 7.714286e-05

Joint ci ratio: 7.278954e-01	ci left: 5.168337e-05	ci right 1.124086e-04	k: 28	n:360000
Cons ci ratio: 8.853111e-03	ci left: 3.510197e-01	ci right 3.541438e-01	k: 126929	n:360000
KS ci ratio: 2.771847e+00	ci left: 7.032724e-08	ci right 1.547669e-05	k: 1	n:360000
POM121   360000 perm   131 sec   (2758 perm/sec)   p_kst 2.777778e-06   p_cons 3.525806e-01   p_joint 7.777778e-05

Joint ci ratio: 7.156608e-01	ci left: 5.249184e-05	ci right 1.125625e-04	k: 29	n:370000
Cons ci ratio: 8.728822e-03	ci left: 3.512412e-01	ci right 3.543232e-01	k: 130529	n:370000
KS ci ratio: 2.771847e+00	ci left: 6.842651e-08	ci right 1.505840e-05	k: 1	n:370000
POM121   370000 perm   135 sec   (2731 perm/sec)   p_kst 2.702703e-06   p_cons 3.527811e-01   p_joint 7.837838e-05

Joint ci ratio: 7.156616e-01	ci left: 5.111046e-05	ci right 1.096004e-04	k: 29	n:380000
Cons ci ratio: 8.612898e-03	ci left: 3.512779e-01	ci right 3.543191e-01	k: 134063	n:380000
KS ci ratio: 2.771848e+00	ci left: 6.662581e-08	ci right 1.466213e-05	k: 1	n:380000
POM121   380000 perm   141 sec   (2701 perm/sec)   p_kst 2.631579e-06   p_cons 3.527974e-01   p_joint 7.631579e-05

Joint ci ratio: 8.765150e-01	ci left: 2.933163e-05	ci right 7.607807e-05	k: 19	n:390000
Cons ci ratio: 8.506152e-03	ci left: 3.510619e-01	ci right 3.540634e-01	k: 137499	n:390000
KS ci ratio: 2.771848e+00	ci left: 6.491745e-08	ci right 1.428618e-05	k: 1	n:390000
POM121   390000 perm   146 sec   (2676 perm/sec)   p_kst 2.564103e-06   p_cons 3.525615e-01   p_joint 4.871795e-05

Joint ci ratio: 9.239309e-01	ci left: 2.475800e-05	ci right 6.804575e-05	k: 17	n:400000
Cons ci ratio: 8.403185e-03	ci left: 3.508619e-01	ci right 3.538252e-01	k: 140937	n:400000
KS ci ratio: 2.771848e+00	ci left: 6.329452e-08	ci right 1.392903e-05	k: 1	n:400000
POM121   400000 perm   151 sec   (2650 perm/sec)   p_kst 2.500000e-06   p_cons 3.523425e-01   p_joint 4.250000e-05

Joint ci ratio: 8.992877e-01	ci left: 2.601957e-05	ci right 6.938390e-05	k: 18	n:410000
Cons ci ratio: 8.296370e-03	ci left: 3.510838e-01	ci right 3.540110e-01	k: 144544	n:410000
KS ci ratio: 2.263202e+00	ci left: 5.907549e-07	ci right 1.762108e-05	k: 2	n:410000
POM121   410000 perm   156 sec   (2626 perm/sec)   p_kst 4.878049e-06   p_cons 3.525463e-01   p_joint 4.390244e-05

Joint ci ratio: 8.992883e-01	ci left: 2.540005e-05	ci right 6.773192e-05	k: 18	n:420000
Cons ci ratio: 8.194850e-03	ci left: 3.512215e-01	ci right 3.541139e-01	k: 148120	n:420000
KS ci ratio: 2.263202e+00	ci left: 5.766893e-07	ci right 1.720153e-05	k: 2	n:420000
POM121   420000 perm   162 sec   (2600 perm/sec)   p_kst 4.761905e-06   p_cons 3.526667e-01   p_joint 4.285714e-05

Joint ci ratio: 8.992888e-01	ci left: 2.480935e-05	ci right 6.615678e-05	k: 18	n:430000
Cons ci ratio: 8.099028e-03	ci left: 3.512368e-01	ci right 3.540954e-01	k: 151646	n:430000
KS ci ratio: 2.263203e+00	ci left: 5.632779e-07	ci right 1.680150e-05	k: 2	n:430000
POM121   430000 perm   167 sec   (2574 perm/sec)   p_kst 4.651163e-06   p_cons 3.526651e-01   p_joint 4.186047e-05

Joint ci ratio: 1.012121e+00	ci left: 1.739540e-05	ci right 5.338493e-05	k: 14	n:440000
Cons ci ratio: 8.006612e-03	ci left: 3.512449e-01	ci right 3.540707e-01	k: 155169	n:440000
KS ci ratio: 2.263203e+00	ci left: 5.504761e-07	ci right 1.641965e-05	k: 2	n:440000
POM121   440000 perm   173 sec   (2544 perm/sec)   p_kst 4.545455e-06   p_cons 3.526568e-01   p_joint 3.181818e-05

Joint ci ratio: 1.012122e+00	ci left: 1.700883e-05	ci right 5.219861e-05	k: 14	n:450000
Cons ci ratio: 7.917635e-03	ci left: 3.512328e-01	ci right 3.540269e-01	k: 158683	n:450000
KS ci ratio: 2.263203e+00	ci left: 5.382433e-07	ci right 1.605477e-05	k: 2	n:450000
POM121   450000 perm   178 sec   (2521 perm/sec)   p_kst 4.444444e-06   p_cons 3.526289e-01   p_joint 3.111111e-05

Joint ci ratio: 1.047647e+00	ci left: 1.504781e-05	ci right 4.832646e-05	k: 13	n:460000
Cons ci ratio: 7.832193e-03	ci left: 3.511844e-01	ci right 3.539479e-01	k: 162180	n:460000
KS ci ratio: 2.263203e+00	ci left: 5.265423e-07	ci right 1.570575e-05	k: 2	n:460000
POM121   460000 perm   184 sec   (2499 perm/sec)   p_kst 4.347826e-06   p_cons 3.525652e-01   p_joint 2.826087e-05

Joint ci ratio: 1.047647e+00	ci left: 1.472764e-05	ci right 4.729825e-05	k: 13	n:470000
Cons ci ratio: 7.749568e-03	ci left: 3.511319e-01	ci right 3.538657e-01	k: 165674	n:470000
KS ci ratio: 2.263203e+00	ci left: 5.153393e-07	ci right 1.537159e-05	k: 2	n:470000
POM121   470000 perm   190 sec   (2473 perm/sec)   p_kst 4.255319e-06   p_cons 3.524979e-01   p_joint 2.765957e-05

Joint ci ratio: 1.012123e+00	ci left: 1.594578e-05	ci right 4.893623e-05	k: 14	n:480000
Cons ci ratio: 7.669644e-03	ci left: 3.510734e-01	ci right 3.537784e-01	k: 169164	n:480000
KS ci ratio: 2.263204e+00	ci left: 5.046031e-07	ci right 1.505135e-05	k: 2	n:480000
POM121   480000 perm   196 sec   (2447 perm/sec)   p_kst 4.166667e-06   p_cons 3.524250e-01   p_joint 2.916667e-05

Joint ci ratio: 9.799830e-01	ci left: 1.713354e-05	ci right 5.048974e-05	k: 15	n:490000
Cons ci ratio: 7.594757e-03	ci left: 3.508604e-01	ci right 3.535373e-01	k: 172577	n:490000
KS ci ratio: 2.263204e+00	ci left: 4.943050e-07	ci right 1.474418e-05	k: 2	n:490000
POM121   490000 perm   202 sec   (2424 perm/sec)   p_kst 4.081633e-06   p_cons 3.521980e-01   p_joint 3.061224e-05

Joint ci ratio: 9.799833e-01	ci left: 1.679087e-05	ci right 4.947996e-05	k: 15	n:500000
Cons ci ratio: 7.517437e-03	ci left: 3.509338e-01	ci right 3.535839e-01	k: 176129	n:500000
KS ci ratio: 2.263204e+00	ci left: 4.844189e-07	ci right 1.444930e-05	k: 2	n:500000
POM121   500000 perm   208 sec   (2404 perm/sec)   p_kst 4.000000e-06   p_cons 3.522580e-01   p_joint 3.000000e-05

Joint ci ratio: 9.799837e-01	ci left: 1.646163e-05	ci right 4.850977e-05	k: 15	n:510000
Cons ci ratio: 7.443007e-03	ci left: 3.509693e-01	ci right 3.535932e-01	k: 179663	n:510000
KS ci ratio: 2.263204e+00	ci left: 4.749205e-07	ci right 1.416598e-05	k: 2	n:510000
POM121   510000 perm   214 sec   (2384 perm/sec)   p_kst 3.921569e-06   p_cons 3.522804e-01   p_joint 2.941176e-05

Joint ci ratio: 9.507232e-01	ci left: 1.758737e-05	ci right 4.996682e-05	k: 16	n:520000
Cons ci ratio: 7.371304e-03	ci left: 3.509689e-01	ci right 3.535674e-01	k: 183179	n:520000
KS ci ratio: 2.263204e+00	ci left: 4.657874e-07	ci right 1.389356e-05	k: 2	n:520000
POM121   520000 perm   220 sec   (2365 perm/sec)   p_kst 3.846154e-06   p_cons 3.522673e-01   p_joint 3.076923e-05

Joint ci ratio: 9.507235e-01	ci left: 1.725553e-05	ci right 4.902406e-05	k: 16	n:530000
Cons ci ratio: 7.303476e-03	ci left: 3.508536e-01	ci right 3.534273e-01	k: 186634	n:530000
KS ci ratio: 2.263205e+00	ci left: 4.569990e-07	ci right 1.363142e-05	k: 2	n:530000
POM121   530000 perm   227 sec   (2333 perm/sec)   p_kst 3.773585e-06   p_cons 3.521396e-01   p_joint 3.018868e-05

Joint ci ratio: 9.507238e-01	ci left: 1.693599e-05	ci right 4.811622e-05	k: 16	n:540000
Cons ci ratio: 7.237105e-03	ci left: 3.507668e-01	ci right 3.533163e-01	k: 190102	n:540000
KS ci ratio: 2.263205e+00	ci left: 4.485360e-07	ci right 1.337899e-05	k: 2	n:540000
POM121   540000 perm   235 sec   (2301 perm/sec)   p_kst 3.703704e-06   p_cons 3.520407e-01   p_joint 2.962963e-05

Joint ci ratio: 9.507241e-01	ci left: 1.662806e-05	ci right 4.724139e-05	k: 16	n:550000
Cons ci ratio: 7.169909e-03	ci left: 3.508485e-01	ci right 3.533749e-01	k: 193661	n:550000
KS ci ratio: 2.263205e+00	ci left: 4.403808e-07	ci right 1.313573e-05	k: 2	n:550000
POM121   550000 perm   241 sec   (2281 perm/sec)   p_kst 3.636364e-06   p_cons 3.521109e-01   p_joint 2.909091e-05

Joint ci ratio: 9.507244e-01	ci left: 1.633113e-05	ci right 4.639780e-05	k: 16	n:560000
Cons ci ratio: 7.105468e-03	ci left: 3.508685e-01	ci right 3.533723e-01	k: 197187	n:560000
KS ci ratio: 2.263205e+00	ci left: 4.325169e-07	ci right 1.290117e-05	k: 2	n:560000
POM121   560000 perm   248 sec   (2256 perm/sec)   p_kst 3.571429e-06   p_cons 3.521196e-01   p_joint 2.857143e-05

Joint ci ratio: 9.239375e-01	ci left: 1.737400e-05	ci right 4.775158e-05	k: 17	n:570000
Cons ci ratio: 7.041434e-03	ci left: 3.509721e-01	ci right 3.534539e-01	k: 200761	n:570000
KS ci ratio: 2.263205e+00	ci left: 4.249288e-07	ci right 1.267483e-05	k: 2	n:570000
POM121   570000 perm   255 sec   (2234 perm/sec)   p_kst 3.508772e-06   p_cons 3.522123e-01   p_joint 2.982456e-05

Joint ci ratio: 9.239377e-01	ci left: 1.707445e-05	ci right 4.692829e-05	k: 17	n:580000
Cons ci ratio: 6.978652e-03	ci left: 3.511015e-01	ci right 3.535620e-01	k: 204352	n:580000
KS ci ratio: 2.263205e+00	ci left: 4.176025e-07	ci right 1.245630e-05	k: 2	n:580000
POM121   580000 perm   262 sec   (2212 perm/sec)   p_kst 3.448276e-06   p_cons 3.523310e-01   p_joint 2.931034e-05

Joint ci ratio: 9.239380e-01	ci left: 1.678505e-05	ci right 4.613290e-05	k: 17	n:590000
Cons ci ratio: 6.920346e-03	ci left: 3.510403e-01	ci right 3.534798e-01	k: 207833	n:590000
KS ci ratio: 2.263205e+00	ci left: 4.105245e-07	ci right 1.224518e-05	k: 2	n:590000
POM121   590000 perm   269 sec   (2192 perm/sec)   p_kst 3.389831e-06   p_cons 3.522593e-01   p_joint 2.881356e-05

Joint ci ratio: 8.992947e-01	ci left: 1.778000e-05	ci right 4.741252e-05	k: 18	n:600000
Cons ci ratio: 6.862174e-03	ci left: 3.510679e-01	ci right 3.534869e-01	k: 211366	n:600000
KS ci ratio: 2.263206e+00	ci left: 4.036824e-07	ci right 1.204109e-05	k: 2	n:600000
POM121   600000 perm   276 sec   (2172 perm/sec)   p_kst 3.333333e-06   p_cons 3.522767e-01   p_joint 3.000000e-05

Joint ci ratio: 8.765236e-01	ci left: 1.875296e-05	ci right 4.864032e-05	k: 19	n:610000
Cons ci ratio: 6.804980e-03	ci left: 3.511257e-01	ci right 3.535249e-01	k: 214918	n:610000
KS ci ratio: 2.263206e+00	ci left: 3.970646e-07	ci right 1.184370e-05	k: 2	n:610000
POM121   610000 perm   283 sec   (2153 perm/sec)   p_kst 3.278689e-06   p_cons 3.523246e-01   p_joint 3.114754e-05

Joint ci ratio: 8.765238e-01	ci left: 1.845049e-05	ci right 4.785580e-05	k: 19	n:620000
Cons ci ratio: 6.747666e-03	ci left: 3.512849e-01	ci right 3.536649e-01	k: 218534	n:620000
KS ci ratio: 2.263206e+00	ci left: 3.906604e-07	ci right 1.165267e-05	k: 2	n:620000
POM121   620000 perm   291 sec   (2133 perm/sec)   p_kst 3.225806e-06   p_cons 3.524742e-01   p_joint 3.064516e-05

Joint ci ratio: 8.765240e-01	ci left: 1.815762e-05	ci right 4.709619e-05	k: 19	n:630000
Cons ci ratio: 6.693521e-03	ci left: 3.513202e-01	ci right 3.536812e-01	k: 222075	n:630000
KS ci ratio: 2.263206e+00	ci left: 3.844594e-07	ci right 1.146771e-05	k: 2	n:630000
POM121   630000 perm   298 sec   (2116 perm/sec)   p_kst 3.174603e-06   p_cons 3.525000e-01   p_joint 3.015873e-05

Joint ci ratio: 8.765243e-01	ci left: 1.787391e-05	ci right 4.636032e-05	k: 19	n:640000
Cons ci ratio: 6.641204e-03	ci left: 3.513169e-01	ci right 3.536594e-01	k: 225592	n:640000
KS ci ratio: 2.263206e+00	ci left: 3.784522e-07	ci right 1.128853e-05	k: 2	n:640000
POM121   640000 perm   306 sec   (2094 perm/sec)   p_kst 3.125000e-06   p_cons 3.524875e-01   p_joint 2.968750e-05

Joint ci ratio: 8.553997e-01	ci left: 1.879474e-05	ci right 4.752018e-05	k: 20	n:650000
Cons ci ratio: 6.589585e-03	ci left: 3.513492e-01	ci right 3.536736e-01	k: 229132	n:650000
KS ci ratio: 2.263206e+00	ci left: 3.726299e-07	ci right 1.111486e-05	k: 2	n:650000
POM121   650000 perm   314 sec   (2071 perm/sec)   p_kst 3.076923e-06   p_cons 3.525108e-01   p_joint 3.076923e-05

Joint ci ratio: 8.553999e-01	ci left: 1.850997e-05	ci right 4.680019e-05	k: 20	n:660000
Cons ci ratio: 6.539888e-03	ci left: 3.513291e-01	ci right 3.536358e-01	k: 232638	n:660000
KS ci ratio: 2.263206e+00	ci left: 3.669840e-07	ci right 1.094645e-05	k: 2	n:660000
POM121   660000 perm   321 sec   (2055 perm/sec)   p_kst 3.030303e-06   p_cons 3.524818e-01   p_joint 3.030303e-05

Joint ci ratio: 7.543886e-01	ci left: 2.534950e-05	ci right 5.685922e-05	k: 26	n:670000
Cons ci ratio: 6.493274e-03	ci left: 3.511710e-01	ci right 3.534601e-01	k: 236051	n:670000
KS ci ratio: 2.263206e+00	ci left: 3.615066e-07	ci right 1.078307e-05	k: 2	n:670000
POM121   670000 perm   329 sec   (2038 perm/sec)   p_kst 2.985075e-06   p_cons 3.523149e-01   p_joint 3.880597e-05

Joint ci ratio: 7.543888e-01	ci left: 2.497671e-05	ci right 5.602307e-05	k: 26	n:680000
Cons ci ratio: 6.446706e-03	ci left: 3.510837e-01	ci right 3.533558e-01	k: 239509	n:680000
KS ci ratio: 2.263206e+00	ci left: 3.561903e-07	ci right 1.062450e-05	k: 2	n:680000
POM121   680000 perm   336 sec   (2021 perm/sec)   p_kst 2.941176e-06   p_cons 3.522191e-01   p_joint 3.823529e-05

Joint ci ratio: 7.543890e-01	ci left: 2.461473e-05	ci right 5.521115e-05	k: 26	n:690000
Cons ci ratio: 6.398076e-03	ci left: 3.512162e-01	ci right 3.534720e-01	k: 243117	n:690000
KS ci ratio: 2.263206e+00	ci left: 3.510281e-07	ci right 1.047052e-05	k: 2	n:690000
POM121   690000 perm   344 sec   (2006 perm/sec)   p_kst 2.898551e-06   p_cons 3.523435e-01   p_joint 3.768116e-05

Joint ci ratio: 7.543893e-01	ci left: 2.426309e-05	ci right 5.442242e-05	k: 26	n:700000
Cons ci ratio: 6.351087e-03	ci left: 3.513051e-01	ci right 3.535447e-01	k: 246697	n:700000
KS ci ratio: 2.263207e+00	ci left: 3.460134e-07	ci right 1.032094e-05	k: 2	n:700000
POM121   700000 perm   352 sec   (1988 perm/sec)   p_kst 2.857143e-06   p_cons 3.524243e-01   p_joint 3.714286e-05

Joint ci ratio: 7.407952e-01	ci left: 2.506095e-05	ci right 5.532851e-05	k: 27	n:710000
Cons ci ratio: 6.304924e-03	ci left: 3.514055e-01	ci right 3.536295e-01	k: 250287	n:710000
KS ci ratio: 2.263207e+00	ci left: 3.411400e-07	ci right 1.017558e-05	k: 2	n:710000
POM121   710000 perm   360 sec   (1972 perm/sec)   p_kst 2.816901e-06   p_cons 3.525169e-01   p_joint 3.802817e-05

Joint ci ratio: 7.279106e-01	ci left: 2.584153e-05	ci right 5.620479e-05	k: 28	n:720000
Cons ci ratio: 6.261523e-03	ci left: 3.513742e-01	ci right 3.535826e-01	k: 253784	n:720000
KS ci ratio: 2.263207e+00	ci left: 3.364020e-07	ci right 1.003425e-05	k: 2	n:720000
POM121   720000 perm   368 sec   (1959 perm/sec)   p_kst 2.777778e-06   p_cons 3.524778e-01   p_joint 3.888889e-05

Joint ci ratio: 7.279108e-01	ci left: 2.548754e-05	ci right 5.543486e-05	k: 28	n:730000
Cons ci ratio: 6.218036e-03	ci left: 3.514149e-01	ci right 3.536082e-01	k: 257333	n:730000
KS ci ratio: 2.263207e+00	ci left: 3.317937e-07	ci right 9.896797e-06	k: 2	n:730000
POM121   730000 perm   375 sec   (1946 perm/sec)   p_kst 2.739726e-06   p_cons 3.525110e-01   p_joint 3.835616e-05

Joint ci ratio: 7.279110e-01	ci left: 2.514311e-05	ci right 5.468575e-05	k: 28	n:740000
Cons ci ratio: 6.176284e-03	ci left: 3.513925e-01	ci right 3.535708e-01	k: 260836	n:740000
KS ci ratio: 2.263207e+00	ci left: 3.273100e-07	ci right 9.763057e-06	k: 2	n:740000
POM121   740000 perm   383 sec   (1933 perm/sec)   p_kst 2.702703e-06   p_cons 3.524811e-01   p_joint 3.783784e-05

Joint ci ratio: 7.156760e-01	ci left: 2.589582e-05	ci right 5.553131e-05	k: 29	n:750000
Cons ci ratio: 6.135774e-03	ci left: 3.513401e-01	ci right 3.535037e-01	k: 264316	n:750000
KS ci ratio: 2.263207e+00	ci left: 3.229459e-07	ci right 9.632883e-06	k: 2	n:750000
POM121   750000 perm   391 sec   (1919 perm/sec)   p_kst 2.666667e-06   p_cons 3.524213e-01   p_joint 3.866667e-05

Joint ci ratio: 7.839866e-01	ci left: 2.023333e-05	ci right 4.698661e-05	k: 24	n:760000
Cons ci ratio: 6.094873e-03	ci left: 3.513772e-01	ci right 3.535266e-01	k: 267863	n:760000
KS ci ratio: 2.263207e+00	ci left: 3.186966e-07	ci right 9.506135e-06	k: 2	n:760000
POM121   760000 perm   399 sec   (1906 perm/sec)   p_kst 2.631579e-06   p_cons 3.524513e-01   p_joint 3.157895e-05

Joint ci ratio: 7.839868e-01	ci left: 1.997056e-05	ci right 4.637640e-05	k: 24	n:770000
Cons ci ratio: 6.055469e-03	ci left: 3.513614e-01	ci right 3.534968e-01	k: 271370	n:770000
KS ci ratio: 2.263207e+00	ci left: 3.145577e-07	ci right 9.382679e-06	k: 2	n:770000
POM121   770000 perm   407 sec   (1891 perm/sec)   p_kst 2.597403e-06   p_cons 3.524286e-01   p_joint 3.116883e-05

Joint ci ratio: 7.839869e-01	ci left: 1.971452e-05	ci right 4.578183e-05	k: 24	n:780000
Cons ci ratio: 6.017258e-03	ci left: 3.513128e-01	ci right 3.534344e-01	k: 274851	n:780000
KS ci ratio: 2.263207e+00	ci left: 3.105249e-07	ci right 9.262389e-06	k: 2	n:780000
POM121   780000 perm   415 sec   (1877 perm/sec)   p_kst 2.564103e-06   p_cons 3.523731e-01   p_joint 3.076923e-05

Joint ci ratio: 8.765270e-01	ci left: 1.448011e-05	ci right 3.755779e-05	k: 19	n:790000
Cons ci ratio: 5.980873e-03	ci left: 3.511808e-01	ci right 3.532887e-01	k: 278265	n:790000
KS ci ratio: 2.263207e+00	ci left: 3.065942e-07	ci right 9.145144e-06	k: 2	n:790000
POM121   790000 perm   424 sec   (1861 perm/sec)   p_kst 2.531646e-06   p_cons 3.522342e-01   p_joint 2.405063e-05

Joint ci ratio: 8.765271e-01	ci left: 1.429911e-05	ci right 3.708832e-05	k: 19	n:800000
Cons ci ratio: 5.943772e-03	ci left: 3.511570e-01	ci right 3.532516e-01	k: 281763	n:800000
KS ci ratio: 2.263207e+00	ci left: 3.027617e-07	ci right 9.030830e-06	k: 2	n:800000
POM121   800000 perm   433 sec   (1848 perm/sec)   p_kst 2.500000e-06   p_cons 3.522037e-01   p_joint 2.375000e-05

Joint ci ratio: 8.765273e-01	ci left: 1.412258e-05	ci right 3.663044e-05	k: 19	n:810000
Cons ci ratio: 5.908343e-03	ci left: 3.510573e-01	ci right 3.531388e-01	k: 285199	n:810000
KS ci ratio: 2.263207e+00	ci left: 2.990239e-07	ci right 8.919339e-06	k: 2	n:810000
POM121   810000 perm   441 sec   (1835 perm/sec)   p_kst 2.469136e-06   p_cons 3.520975e-01   p_joint 2.345679e-05

Joint ci ratio: 8.765274e-01	ci left: 1.395035e-05	ci right 3.618373e-05	k: 19	n:820000
Cons ci ratio: 5.872300e-03	ci left: 3.510564e-01	ci right 3.531251e-01	k: 288714	n:820000
KS ci ratio: 2.263208e+00	ci left: 2.953773e-07	ci right 8.810567e-06	k: 2	n:820000
POM121   820000 perm   451 sec   (1817 perm/sec)   p_kst 2.439024e-06   p_cons 3.520902e-01   p_joint 2.317073e-05

Joint ci ratio: 8.765276e-01	ci left: 1.378227e-05	ci right 3.574779e-05	k: 19	n:830000
Cons ci ratio: 5.835892e-03	ci left: 3.511350e-01	ci right 3.531913e-01	k: 292295	n:830000
KS ci ratio: 2.263208e+00	ci left: 2.918185e-07	ci right 8.704416e-06	k: 2	n:830000
POM121   830000 perm   462 sec   (1797 perm/sec)   p_kst 2.409639e-06   p_cons 3.521627e-01   p_joint 2.289157e-05

Joint ci ratio: 8.765277e-01	ci left: 1.361820e-05	ci right 3.532222e-05	k: 19	n:840000
Cons ci ratio: 5.801000e-03	ci left: 3.511451e-01	ci right 3.531892e-01	k: 295820	n:840000
KS ci ratio: 2.263208e+00	ci left: 2.883445e-07	ci right 8.600792e-06	k: 2	n:840000
POM121   840000 perm   471 sec   (1785 perm/sec)   p_kst 2.380952e-06   p_cons 3.521667e-01   p_joint 2.261905e-05

Joint ci ratio: 8.765278e-01	ci left: 1.345798e-05	ci right 3.490667e-05	k: 19	n:850000
Cons ci ratio: 5.768302e-03	ci left: 3.510305e-01	ci right 3.530623e-01	k: 299239	n:850000
KS ci ratio: 2.263208e+00	ci left: 2.849522e-07	ci right 8.499606e-06	k: 2	n:850000
POM121   850000 perm   479 sec   (1774 perm/sec)   p_kst 2.352941e-06   p_cons 3.520459e-01   p_joint 2.235294e-05

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.289386e-06	k: 0	n:860000
Cons ci ratio: 5.734572e-03	ci left: 3.510440e-01	ci right 3.530640e-01	k: 302766	n:860000
KS ci ratio: 2.771854e+00	ci left: 2.943931e-08	ci right 6.478638e-06	k: 1	n:860000
POM121   860000 perm   488 sec   (1763 perm/sec)   p_kst 1.162791e-06   p_cons 3.520535e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.240082e-06	k: 0	n:870000
Cons ci ratio: 5.700910e-03	ci left: 3.510986e-01	ci right 3.531070e-01	k: 306329	n:870000
KS ci ratio: 2.771854e+00	ci left: 2.910093e-08	ci right 6.404171e-06	k: 1	n:870000
POM121   870000 perm   497 sec   (1751 perm/sec)   p_kst 1.149425e-06   p_cons 3.521023e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.191900e-06	k: 0	n:880000
Cons ci ratio: 5.669669e-03	ci left: 3.510043e-01	ci right 3.530012e-01	k: 309762	n:880000
KS ci ratio: 2.771854e+00	ci left: 2.877024e-08	ci right 6.331396e-06	k: 1	n:880000
POM121   880000 perm   506 sec   (1740 perm/sec)   p_kst 1.136364e-06   p_cons 3.520023e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.144800e-06	k: 0	n:890000
Cons ci ratio: 5.638991e-03	ci left: 3.509078e-01	ci right 3.528932e-01	k: 313191	n:890000
KS ci ratio: 2.771854e+00	ci left: 2.844697e-08	ci right 6.260257e-06	k: 1	n:890000
POM121   890000 perm   515 sec   (1729 perm/sec)   p_kst 1.123596e-06   p_cons 3.519000e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.098747e-06	k: 0	n:900000
Cons ci ratio: 5.608027e-03	ci left: 3.508766e-01	ci right 3.528510e-01	k: 316677	n:900000
KS ci ratio: 2.771854e+00	ci left: 2.813090e-08	ci right 6.190699e-06	k: 1	n:900000
POM121   900000 perm   524 sec   (1718 perm/sec)   p_kst 1.111111e-06   p_cons 3.518633e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.053705e-06	k: 0	n:910000
Cons ci ratio: 5.576411e-03	ci left: 3.509407e-01	ci right 3.529042e-01	k: 320249	n:910000
KS ci ratio: 2.771854e+00	ci left: 2.782177e-08	ci right 6.122670e-06	k: 1	n:910000
POM121   910000 perm   533 sec   (1706 perm/sec)   p_kst 1.098901e-06   p_cons 3.519220e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.009644e-06	k: 0	n:920000
Cons ci ratio: 5.545615e-03	ci left: 3.509795e-01	ci right 3.529323e-01	k: 323799	n:920000
KS ci ratio: 2.771854e+00	ci left: 2.751936e-08	ci right 6.056119e-06	k: 1	n:920000
POM121   920000 perm   543 sec   (1693 perm/sec)   p_kst 1.086957e-06   p_cons 3.519554e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.966529e-06	k: 0	n:930000
Cons ci ratio: 5.516143e-03	ci left: 3.509497e-01	ci right 3.528920e-01	k: 327286	n:930000
KS ci ratio: 2.771854e+00	ci left: 2.722345e-08	ci right 5.991000e-06	k: 1	n:930000
POM121   930000 perm   553 sec   (1682 perm/sec)   p_kst 1.075269e-06   p_cons 3.519204e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.924332e-06	k: 0	n:940000
Cons ci ratio: 5.487558e-03	ci left: 3.508856e-01	ci right 3.528174e-01	k: 330740	n:940000
KS ci ratio: 2.771854e+00	ci left: 2.693384e-08	ci right 5.927266e-06	k: 1	n:940000
POM121   940000 perm   563 sec   (1669 perm/sec)   p_kst 1.063830e-06   p_cons 3.518511e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.883023e-06	k: 0	n:950000
Cons ci ratio: 5.458342e-03	ci left: 3.509123e-01	ci right 3.528339e-01	k: 334279	n:950000
KS ci ratio: 2.771854e+00	ci left: 2.665032e-08	ci right 5.864874e-06	k: 1	n:950000
POM121   950000 perm   573 sec   (1658 perm/sec)   p_kst 1.052632e-06   p_cons 3.518726e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.842575e-06	k: 0	n:960000
Cons ci ratio: 5.430046e-03	ci left: 3.508999e-01	ci right 3.528115e-01	k: 337781	n:960000
KS ci ratio: 2.771854e+00	ci left: 2.637272e-08	ci right 5.803781e-06	k: 1	n:960000
POM121   960000 perm   586 sec   (1639 perm/sec)   p_kst 1.041667e-06   p_cons 3.518552e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.802961e-06	k: 0	n:970000
Cons ci ratio: 5.402320e-03	ci left: 3.508764e-01	ci right 3.527781e-01	k: 341272	n:970000
KS ci ratio: 2.771854e+00	ci left: 2.610083e-08	ci right 5.743949e-06	k: 1	n:970000
POM121   970000 perm   596 sec   (1628 perm/sec)   p_kst 1.030928e-06   p_cons 3.518268e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.764156e-06	k: 0	n:980000
Cons ci ratio: 5.373776e-03	ci left: 3.509585e-01	ci right 3.528505e-01	k: 344866	n:980000
KS ci ratio: 2.771854e+00	ci left: 2.583450e-08	ci right 5.685337e-06	k: 1	n:980000
POM121   980000 perm   606 sec   (1617 perm/sec)   p_kst 1.020408e-06   p_cons 3.519041e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.726134e-06	k: 0	n:990000
Cons ci ratio: 5.346473e-03	ci left: 3.509713e-01	ci right 3.528538e-01	k: 348393	n:990000
KS ci ratio: 2.771854e+00	ci left: 2.557354e-08	ci right 5.627910e-06	k: 1	n:990000
POM121   990000 perm   618 sec   (1601 perm/sec)   p_kst 1.010101e-06   p_cons 3.519121e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.688873e-06	k: 0	n:1000000
Cons ci ratio: 5.319278e-03	ci left: 3.510099e-01	ci right 3.528830e-01	k: 351946	n:1000000
KS ci ratio: 2.771854e+00	ci left: 2.531781e-08	ci right 5.571631e-06	k: 1	n:1000000
POM121   1000000 perm   632 sec   (1582 perm/sec)   p_kst 1.000000e-06   p_cons 3.519460e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.652349e-06	k: 0	n:1010000
Cons ci ratio: 5.292989e-03	ci left: 3.510052e-01	ci right 3.528689e-01	k: 355456	n:1010000
KS ci ratio: 2.771854e+00	ci left: 2.506714e-08	ci right 5.516466e-06	k: 1	n:1010000
POM121   1010000 perm   645 sec   (1565 perm/sec)   p_kst 9.900990e-07   p_cons 3.519366e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.616542e-06	k: 0	n:1020000
Cons ci ratio: 5.266621e-03	ci left: 3.510408e-01	ci right 3.528954e-01	k: 359007	n:1020000
KS ci ratio: 2.771855e+00	ci left: 2.482138e-08	ci right 5.462383e-06	k: 1	n:1020000
POM121   1020000 perm   656 sec   (1556 perm/sec)   p_kst 9.803922e-07   p_cons 3.519676e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.581430e-06	k: 0	n:1030000
Cons ci ratio: 5.241546e-03	ci left: 3.509971e-01	ci right 3.528426e-01	k: 362477	n:1030000
KS ci ratio: 2.771855e+00	ci left: 2.458040e-08	ci right 5.409351e-06	k: 1	n:1030000
POM121   1030000 perm   666 sec   (1548 perm/sec)   p_kst 9.708738e-07   p_cons 3.519194e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.546993e-06	k: 0	n:1040000
Cons ci ratio: 5.216002e-03	ci left: 3.510263e-01	ci right 3.528630e-01	k: 366022	n:1040000
KS ci ratio: 2.771855e+00	ci left: 2.434405e-08	ci right 5.357338e-06	k: 1	n:1040000
POM121   1040000 perm   675 sec   (1540 perm/sec)   p_kst 9.615385e-07   p_cons 3.519442e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.513212e-06	k: 0	n:1050000
Cons ci ratio: 5.191413e-03	ci left: 3.510036e-01	ci right 3.528315e-01	k: 369513	n:1050000
KS ci ratio: 2.771855e+00	ci left: 2.411220e-08	ci right 5.306315e-06	k: 1	n:1050000
POM121   1050000 perm   685 sec   (1532 perm/sec)   p_kst 9.523810e-07   p_cons 3.519171e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.480069e-06	k: 0	n:1060000
Cons ci ratio: 5.167361e-03	ci left: 3.509644e-01	ci right 3.527836e-01	k: 372986	n:1060000
KS ci ratio: 2.771855e+00	ci left: 2.388472e-08	ci right 5.256256e-06	k: 1	n:1060000
POM121   1060000 perm   695 sec   (1525 perm/sec)   p_kst 9.433962e-07   p_cons 3.518736e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.447545e-06	k: 0	n:1070000
Cons ci ratio: 5.143576e-03	ci left: 3.509315e-01	ci right 3.527421e-01	k: 376465	n:1070000
KS ci ratio: 2.771855e+00	ci left: 2.366150e-08	ci right 5.207132e-06	k: 1	n:1070000
POM121   1070000 perm   705 sec   (1517 perm/sec)   p_kst 9.345794e-07   p_cons 3.518364e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.415623e-06	k: 0	n:1080000
Cons ci ratio: 5.119535e-03	ci left: 3.509511e-01	ci right 3.527534e-01	k: 380000	n:1080000
KS ci ratio: 2.771855e+00	ci left: 2.344241e-08	ci right 5.158918e-06	k: 1	n:1080000
POM121   1080000 perm   715 sec   (1510 perm/sec)   p_kst 9.259259e-07   p_cons 3.518519e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.384287e-06	k: 0	n:1090000
Cons ci ratio: 5.096003e-03	ci left: 3.509548e-01	ci right 3.527487e-01	k: 383518	n:1090000
KS ci ratio: 2.771855e+00	ci left: 2.322735e-08	ci right 5.111589e-06	k: 1	n:1090000
POM121   1090000 perm   726 sec   (1501 perm/sec)   p_kst 9.174312e-07   p_cons 3.518514e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.353521e-06	k: 0	n:1100000
Cons ci ratio: 5.073186e-03	ci left: 3.509230e-01	ci right 3.527087e-01	k: 386997	n:1100000
KS ci ratio: 2.771855e+00	ci left: 2.301619e-08	ci right 5.065120e-06	k: 1	n:1100000
POM121   1100000 perm   736 sec   (1494 perm/sec)   p_kst 9.090909e-07   p_cons 3.518155e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.323309e-06	k: 0	n:1110000
Cons ci ratio: 5.049575e-03	ci left: 3.509908e-01	ci right 3.527685e-01	k: 390586	n:1110000
KS ci ratio: 2.771855e+00	ci left: 2.280884e-08	ci right 5.019488e-06	k: 1	n:1110000
POM121   1110000 perm   747 sec   (1487 perm/sec)   p_kst 9.009009e-07   p_cons 3.518793e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.293637e-06	k: 0	n:1120000
Cons ci ratio: 5.026950e-03	ci left: 3.509976e-01	ci right 3.527674e-01	k: 394108	n:1120000
KS ci ratio: 2.771855e+00	ci left: 2.260519e-08	ci right 4.974671e-06	k: 1	n:1120000
POM121   1120000 perm   757 sec   (1479 perm/sec)   p_kst 8.928571e-07   p_cons 3.518821e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.264490e-06	k: 0	n:1130000
Cons ci ratio: 5.005453e-03	ci left: 3.509292e-01	ci right 3.526910e-01	k: 397545	n:1130000
KS ci ratio: 2.771855e+00	ci left: 2.240514e-08	ci right 4.930648e-06	k: 1	n:1130000
POM121   1130000 perm   769 sec   (1469 perm/sec)   p_kst 8.849558e-07   p_cons 3.518097e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.235854e-06	k: 0	n:1140000
Cons ci ratio: 4.983212e-03	ci left: 3.509549e-01	ci right 3.527090e-01	k: 401088	n:1140000
KS ci ratio: 2.771855e+00	ci left: 2.220860e-08	ci right 4.887397e-06	k: 1	n:1140000
POM121   1140000 perm   780 sec   (1461 perm/sec)   p_kst 8.771930e-07   p_cons 3.518316e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.207716e-06	k: 0	n:1150000
Cons ci ratio: 4.961057e-03	ci left: 3.509993e-01	ci right 3.527458e-01	k: 404653	n:1150000
KS ci ratio: 2.771855e+00	ci left: 2.201548e-08	ci right 4.844898e-06	k: 1	n:1150000
POM121   1150000 perm   793 sec   (1449 perm/sec)   p_kst 8.695652e-07   p_cons 3.518722e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.180063e-06	k: 0	n:1160000
Cons ci ratio: 4.940091e-03	ci left: 3.509602e-01	ci right 3.526991e-01	k: 408122	n:1160000
KS ci ratio: 2.771855e+00	ci left: 2.182570e-08	ci right 4.803131e-06	k: 1	n:1160000
POM121   1160000 perm   806 sec   (1439 perm/sec)   p_kst 8.620690e-07   p_cons 3.518293e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.152883e-06	k: 0	n:1170000
Cons ci ratio: 4.918550e-03	ci left: 3.509996e-01	ci right 3.527311e-01	k: 411682	n:1170000
KS ci ratio: 2.771855e+00	ci left: 2.163915e-08	ci right 4.762079e-06	k: 1	n:1170000
POM121   1170000 perm   818 sec   (1430 perm/sec)   p_kst 8.547009e-07   p_cons 3.518650e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.126164e-06	k: 0	n:1180000
Cons ci ratio: 4.898225e-03	ci left: 3.509510e-01	ci right 3.526751e-01	k: 415139	n:1180000
KS ci ratio: 2.771855e+00	ci left: 2.145577e-08	ci right 4.721723e-06	k: 1	n:1180000
POM121   1180000 perm   833 sec   (1416 perm/sec)   p_kst 8.474576e-07   p_cons 3.518127e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.099894e-06	k: 0	n:1190000
Cons ci ratio: 4.877539e-03	ci left: 3.509604e-01	ci right 3.526773e-01	k: 418664	n:1190000
KS ci ratio: 2.771855e+00	ci left: 2.127547e-08	ci right 4.682044e-06	k: 1	n:1190000
POM121   1190000 perm   849 sec   (1402 perm/sec)   p_kst 8.403361e-07   p_cons 3.518185e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.074061e-06	k: 0	n:1200000
Cons ci ratio: 4.857397e-03	ci left: 3.509430e-01	ci right 3.526527e-01	k: 422157	n:1200000
KS ci ratio: 2.771855e+00	ci left: 2.109817e-08	ci right 4.643027e-06	k: 1	n:1200000
POM121   1200000 perm   862 sec   (1393 perm/sec)   p_kst 8.333333e-07   p_cons 3.517975e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.048656e-06	k: 0	n:1210000
Cons ci ratio: 4.838117e-03	ci left: 3.508681e-01	ci right 3.525706e-01	k: 425580	n:1210000
KS ci ratio: 2.771855e+00	ci left: 2.092381e-08	ci right 4.604655e-06	k: 1	n:1210000
POM121   1210000 perm   875 sec   (1383 perm/sec)   p_kst 8.264463e-07   p_cons 3.517190e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.023667e-06	k: 0	n:1220000
Cons ci ratio: 4.818076e-03	ci left: 3.508879e-01	ci right 3.525833e-01	k: 429117	n:1220000
KS ci ratio: 2.771855e+00	ci left: 2.075230e-08	ci right 4.566912e-06	k: 1	n:1220000
POM121   1220000 perm   887 sec   (1375 perm/sec)   p_kst 8.196721e-07   p_cons 3.517352e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.999084e-06	k: 0	n:1230000
Cons ci ratio: 4.797786e-03	ci left: 3.509544e-01	ci right 3.526430e-01	k: 432712	n:1230000
KS ci ratio: 2.771855e+00	ci left: 2.058358e-08	ci right 4.529783e-06	k: 1	n:1230000
POM121   1230000 perm   900 sec   (1366 perm/sec)   p_kst 8.130081e-07   p_cons 3.517984e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.974898e-06	k: 0	n:1240000
Cons ci ratio: 4.779212e-03	ci left: 3.508805e-01	ci right 3.525622e-01	k: 436134	n:1240000
KS ci ratio: 2.771855e+00	ci left: 2.041759e-08	ci right 4.493253e-06	k: 1	n:1240000
POM121   1240000 perm   914 sec   (1356 perm/sec)   p_kst 8.064516e-07   p_cons 3.517210e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.951099e-06	k: 0	n:1250000
Cons ci ratio: 4.759875e-03	ci left: 3.509012e-01	ci right 3.525762e-01	k: 439673	n:1250000
KS ci ratio: 2.771855e+00	ci left: 2.025425e-08	ci right 4.457307e-06	k: 1	n:1250000
POM121   1250000 perm   928 sec   (1347 perm/sec)   p_kst 8.000000e-07   p_cons 3.517384e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.927678e-06	k: 0	n:1260000
Cons ci ratio: 4.740540e-03	ci left: 3.509439e-01	ci right 3.526123e-01	k: 443240	n:1260000
KS ci ratio: 2.771855e+00	ci left: 2.009350e-08	ci right 4.421931e-06	k: 1	n:1260000
POM121   1260000 perm   942 sec   (1338 perm/sec)   p_kst 7.936508e-07   p_cons 3.517778e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.904625e-06	k: 0	n:1270000
Cons ci ratio: 4.721740e-03	ci left: 3.509568e-01	ci right 3.526186e-01	k: 446770	n:1270000
KS ci ratio: 2.771855e+00	ci left: 1.993528e-08	ci right 4.387113e-06	k: 1	n:1270000
POM121   1270000 perm   955 sec   (1330 perm/sec)   p_kst 7.874016e-07   p_cons 3.517874e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.881933e-06	k: 0	n:1280000
Cons ci ratio: 4.703315e-03	ci left: 3.509547e-01	ci right 3.526100e-01	k: 450281	n:1280000
KS ci ratio: 2.771855e+00	ci left: 1.977954e-08	ci right 4.352839e-06	k: 1	n:1280000
POM121   1280000 perm   973 sec   (1315 perm/sec)   p_kst 7.812500e-07   p_cons 3.517820e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.859592e-06	k: 0	n:1290000
Cons ci ratio: 4.906606e-03	ci left: 3.301965e-01	ci right 3.318213e-01	k: 427001	n:1290000
KS ci ratio: 2.771855e+00	ci left: 1.962621e-08	ci right 4.319096e-06	k: 1	n:1290000
POM121   1290000 perm   990 sec   (1303 perm/sec)   p_kst 7.751938e-07   p_cons 3.310085e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.837596e-06	k: 0	n:1300000
Cons ci ratio: 4.886833e-03	ci left: 3.302779e-01	ci right 3.318967e-01	k: 430413	n:1300000
KS ci ratio: 2.771855e+00	ci left: 1.947524e-08	ci right 4.285872e-06	k: 1	n:1300000
POM121   1300000 perm   1006 sec   (1293 perm/sec)   p_kst 7.692308e-07   p_cons 3.310869e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.815935e-06	k: 0	n:1310000
Cons ci ratio: 4.868437e-03	ci left: 3.302544e-01	ci right 3.318669e-01	k: 433689	n:1310000
KS ci ratio: 2.771855e+00	ci left: 1.932657e-08	ci right 4.253155e-06	k: 1	n:1310000
POM121   1310000 perm   1020 sec   (1284 perm/sec)   p_kst 7.633588e-07   p_cons 3.310603e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.794602e-06	k: 0	n:1320000
Cons ci ratio: 4.849585e-03	ci left: 3.302919e-01	ci right 3.318983e-01	k: 437045	n:1320000
KS ci ratio: 2.771855e+00	ci left: 1.918016e-08	ci right 4.220935e-06	k: 1	n:1320000
POM121   1320000 perm   1034 sec   (1277 perm/sec)   p_kst 7.575758e-07   p_cons 3.310947e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.773590e-06	k: 0	n:1330000
Cons ci ratio: 4.830991e-03	ci left: 3.303250e-01	ci right 3.319254e-01	k: 440396	n:1330000
KS ci ratio: 2.771855e+00	ci left: 1.903595e-08	ci right 4.189198e-06	k: 1	n:1330000
POM121   1330000 perm   1053 sec   (1263 perm/sec)   p_kst 7.518797e-07   p_cons 3.311248e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.752891e-06	k: 0	n:1340000
Cons ci ratio: 4.812754e-03	ci left: 3.303442e-01	ci right 3.319386e-01	k: 443729	n:1340000
KS ci ratio: 2.771855e+00	ci left: 1.889389e-08	ci right 4.157936e-06	k: 1	n:1340000
POM121   1340000 perm   1068 sec   (1255 perm/sec)   p_kst 7.462687e-07   p_cons 3.311410e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.732500e-06	k: 0	n:1350000
Cons ci ratio: 4.795381e-03	ci left: 3.303024e-01	ci right 3.318909e-01	k: 446980	n:1350000
KS ci ratio: 2.771856e+00	ci left: 1.875393e-08	ci right 4.127136e-06	k: 1	n:1350000
POM121   1350000 perm   1082 sec   (1248 perm/sec)   p_kst 7.407407e-07   p_cons 3.310963e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.712408e-06	k: 0	n:1360000
Cons ci ratio: 4.777424e-03	ci left: 3.303326e-01	ci right 3.319152e-01	k: 450328	n:1360000
KS ci ratio: 2.771856e+00	ci left: 1.861604e-08	ci right 4.096790e-06	k: 1	n:1360000
POM121   1360000 perm   1096 sec   (1241 perm/sec)   p_kst 7.352941e-07   p_cons 3.311235e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.692609e-06	k: 0	n:1370000
Cons ci ratio: 4.759700e-03	ci left: 3.303594e-01	ci right 3.319362e-01	k: 453672	n:1370000
KS ci ratio: 2.771856e+00	ci left: 1.848015e-08	ci right 4.066886e-06	k: 1	n:1370000
POM121   1370000 perm   1110 sec   (1234 perm/sec)   p_kst 7.299270e-07   p_cons 3.311474e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.673097e-06	k: 0	n:1380000
Cons ci ratio: 4.742140e-03	ci left: 3.303887e-01	ci right 3.319599e-01	k: 457020	n:1380000
KS ci ratio: 2.771856e+00	ci left: 1.834624e-08	ci right 4.037416e-06	k: 1	n:1380000
POM121   1380000 perm   1126 sec   (1226 perm/sec)   p_kst 7.246377e-07   p_cons 3.311739e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.653867e-06	k: 0	n:1390000
Cons ci ratio: 4.724803e-03	ci left: 3.304147e-01	ci right 3.319802e-01	k: 460364	n:1390000
KS ci ratio: 2.771856e+00	ci left: 1.821425e-08	ci right 4.008370e-06	k: 1	n:1390000
POM121   1390000 perm   1140 sec   (1219 perm/sec)   p_kst 7.194245e-07   p_cons 3.311971e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.634910e-06	k: 0	n:1400000
Cons ci ratio: 4.708149e-03	ci left: 3.303940e-01	ci right 3.319539e-01	k: 463643	n:1400000
KS ci ratio: 2.263210e+00	ci left: 1.730067e-07	ci right 5.160482e-06	k: 2	n:1400000
POM121   1400000 perm   1159 sec   (1208 perm/sec)   p_kst 1.428571e-06   p_cons 3.311736e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.616223e-06	k: 0	n:1410000
Cons ci ratio: 4.691009e-03	ci left: 3.304359e-01	ci right 3.319903e-01	k: 467010	n:1410000
KS ci ratio: 2.263210e+00	ci left: 1.717797e-07	ci right 5.123882e-06	k: 2	n:1410000
POM121   1410000 perm   1177 sec   (1198 perm/sec)   p_kst 1.418440e-06   p_cons 3.312128e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.597799e-06	k: 0	n:1420000
Cons ci ratio: 4.674604e-03	ci left: 3.304252e-01	ci right 3.319741e-01	k: 470303	n:1420000
KS ci ratio: 2.263210e+00	ci left: 1.705700e-07	ci right 5.087799e-06	k: 2	n:1420000
POM121   1420000 perm   1191 sec   (1193 perm/sec)   p_kst 1.408451e-06   p_cons 3.311993e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.579633e-06	k: 0	n:1430000
Cons ci ratio: 4.658569e-03	ci left: 3.303958e-01	ci right 3.319392e-01	k: 473569	n:1430000
KS ci ratio: 2.263210e+00	ci left: 1.693772e-07	ci right 5.052220e-06	k: 2	n:1430000
POM121   1430000 perm   1206 sec   (1185 perm/sec)   p_kst 1.398601e-06   p_cons 3.311671e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.561719e-06	k: 0	n:1440000
Cons ci ratio: 4.642247e-03	ci left: 3.304098e-01	ci right 3.319479e-01	k: 476897	n:1440000
KS ci ratio: 2.263210e+00	ci left: 1.682009e-07	ci right 5.017135e-06	k: 2	n:1440000
POM121   1440000 perm   1223 sec   (1177 perm/sec)   p_kst 1.388889e-06   p_cons 3.311785e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.544052e-06	k: 0	n:1450000
Cons ci ratio: 4.626332e-03	ci left: 3.304009e-01	ci right 3.319336e-01	k: 480192	n:1450000
KS ci ratio: 2.263210e+00	ci left: 1.670409e-07	ci right 4.982534e-06	k: 2	n:1450000
POM121   1450000 perm   1239 sec   (1170 perm/sec)   p_kst 1.379310e-06   p_cons 3.311669e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.526627e-06	k: 0	n:1460000
Cons ci ratio: 4.610537e-03	ci left: 3.303962e-01	ci right 3.319237e-01	k: 483493	n:1460000
KS ci ratio: 2.263210e+00	ci left: 1.658968e-07	ci right 4.948407e-06	k: 2	n:1460000
POM121   1460000 perm   1252 sec   (1166 perm/sec)   p_kst 1.369863e-06   p_cons 3.311596e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.509439e-06	k: 0	n:1470000
Cons ci ratio: 4.594163e-03	ci left: 3.304630e-01	ci right 3.319853e-01	k: 486899	n:1470000
KS ci ratio: 2.263210e+00	ci left: 1.647683e-07	ci right 4.914745e-06	k: 2	n:1470000
POM121   1470000 perm   1268 sec   (1159 perm/sec)   p_kst 1.360544e-06   p_cons 3.312238e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.492483e-06	k: 0	n:1480000
Cons ci ratio: 4.577675e-03	ci left: 3.305565e-01	ci right 3.320738e-01	k: 490346	n:1480000
KS ci ratio: 2.263210e+00	ci left: 1.636550e-07	ci right 4.881537e-06	k: 2	n:1480000
POM121   1480000 perm   1282 sec   (1154 perm/sec)   p_kst 1.351351e-06   p_cons 3.313149e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.475755e-06	k: 0	n:1490000
Cons ci ratio: 4.562323e-03	ci left: 3.305556e-01	ci right 3.320678e-01	k: 493654	n:1490000
KS ci ratio: 2.263210e+00	ci left: 1.625566e-07	ci right 4.848775e-06	k: 2	n:1490000
POM121   1490000 perm   1298 sec   (1148 perm/sec)   p_kst 1.342282e-06   p_cons 3.313114e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.459250e-06	k: 0	n:1500000
Cons ci ratio: 4.547693e-03	ci left: 3.304995e-01	ci right 3.320065e-01	k: 496879	n:1500000
KS ci ratio: 2.263210e+00	ci left: 1.614729e-07	ci right 4.816450e-06	k: 2	n:1500000
POM121   1500000 perm   1313 sec   (1143 perm/sec)   p_kst 1.333333e-06   p_cons 3.312527e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.442964e-06	k: 0	n:1510000
Cons ci ratio: 4.533270e-03	ci left: 3.304374e-01	ci right 3.319394e-01	k: 500094	n:1510000
KS ci ratio: 2.263210e+00	ci left: 1.604035e-07	ci right 4.784553e-06	k: 2	n:1510000
POM121   1510000 perm   1329 sec   (1137 perm/sec)   p_kst 1.324503e-06   p_cons 3.311881e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.426891e-06	k: 0	n:1520000
Cons ci ratio: 4.518178e-03	ci left: 3.304551e-01	ci right 3.319521e-01	k: 503429	n:1520000
KS ci ratio: 2.263210e+00	ci left: 1.593482e-07	ci right 4.753076e-06	k: 2	n:1520000
POM121   1520000 perm   1345 sec   (1130 perm/sec)   p_kst 1.315789e-06   p_cons 3.312033e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.411029e-06	k: 0	n:1530000
Cons ci ratio: 4.503861e-03	ci left: 3.304111e-01	ci right 3.319032e-01	k: 506670	n:1530000
KS ci ratio: 2.263210e+00	ci left: 1.583068e-07	ci right 4.722010e-06	k: 2	n:1530000
POM121   1530000 perm   1363 sec   (1122 perm/sec)   p_kst 1.307190e-06   p_cons 3.311569e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.395373e-06	k: 0	n:1540000
Cons ci ratio: 4.489146e-03	ci left: 3.304203e-01	ci right 3.319076e-01	k: 509992	n:1540000
KS ci ratio: 2.263210e+00	ci left: 1.572788e-07	ci right 4.691348e-06	k: 2	n:1540000
POM121   1540000 perm   1377 sec   (1118 perm/sec)   p_kst 1.298701e-06   p_cons 3.311636e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.379919e-06	k: 0	n:1550000
Cons ci ratio: 4.474482e-03	ci left: 3.304384e-01	ci right 3.319209e-01	k: 513328	n:1550000
KS ci ratio: 2.263210e+00	ci left: 1.562641e-07	ci right 4.661081e-06	k: 2	n:1550000
POM121   1550000 perm   1394 sec   (1112 perm/sec)   p_kst 1.290323e-06   p_cons 3.311794e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.364664e-06	k: 0	n:1560000
Cons ci ratio: 4.460201e-03	ci left: 3.304326e-01	ci right 3.319103e-01	k: 516627	n:1560000
KS ci ratio: 2.263210e+00	ci left: 1.552624e-07	ci right 4.631202e-06	k: 2	n:1560000
POM121   1560000 perm   1409 sec   (1107 perm/sec)   p_kst 1.282051e-06   p_cons 3.311712e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.349602e-06	k: 0	n:1570000
Cons ci ratio: 4.446119e-03	ci left: 3.304205e-01	ci right 3.318935e-01	k: 519916	n:1570000
KS ci ratio: 2.263210e+00	ci left: 1.542735e-07	ci right 4.601704e-06	k: 2	n:1570000
POM121   1570000 perm   1424 sec   (1102 perm/sec)   p_kst 1.273885e-06   p_cons 3.311567e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.334731e-06	k: 0	n:1580000
Cons ci ratio: 4.431777e-03	ci left: 3.304478e-01	ci right 3.319161e-01	k: 523267	n:1580000
KS ci ratio: 2.263210e+00	ci left: 1.532970e-07	ci right 4.572580e-06	k: 2	n:1580000
POM121   1580000 perm   1440 sec   (1097 perm/sec)   p_kst 1.265823e-06   p_cons 3.311816e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.320047e-06	k: 0	n:1590000
Cons ci ratio: 4.417980e-03	ci left: 3.304339e-01	ci right 3.318976e-01	k: 526553	n:1590000
KS ci ratio: 2.263210e+00	ci left: 1.523329e-07	ci right 4.543821e-06	k: 2	n:1590000
POM121   1590000 perm   1459 sec   (1090 perm/sec)   p_kst 1.257862e-06   p_cons 3.311654e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.305547e-06	k: 0	n:1600000
Cons ci ratio: 4.403970e-03	ci left: 3.304545e-01	ci right 3.319136e-01	k: 529894	n:1600000
KS ci ratio: 2.263210e+00	ci left: 1.513808e-07	ci right 4.515422e-06	k: 2	n:1600000
POM121   1600000 perm   1479 sec   (1082 perm/sec)   p_kst 1.250000e-06   p_cons 3.311837e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.291227e-06	k: 0	n:1610000
Cons ci ratio: 4.390055e-03	ci left: 3.304786e-01	ci right 3.319332e-01	k: 533241	n:1610000
KS ci ratio: 2.263210e+00	ci left: 1.504406e-07	ci right 4.487376e-06	k: 2	n:1610000
POM121   1610000 perm   1494 sec   (1078 perm/sec)   p_kst 1.242236e-06   p_cons 3.312056e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.277083e-06	k: 0	n:1620000
Cons ci ratio: 4.376534e-03	ci left: 3.304759e-01	ci right 3.319260e-01	k: 536545	n:1620000
KS ci ratio: 2.263210e+00	ci left: 1.495119e-07	ci right 4.459677e-06	k: 2	n:1620000
POM121   1620000 perm   1511 sec   (1072 perm/sec)   p_kst 1.234568e-06   p_cons 3.312006e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.263114e-06	k: 0	n:1630000
Cons ci ratio: 4.363300e-03	ci left: 3.304566e-01	ci right 3.319023e-01	k: 539822	n:1630000
KS ci ratio: 2.263210e+00	ci left: 1.485947e-07	ci right 4.432317e-06	k: 2	n:1630000
POM121   1630000 perm   1527 sec   (1067 perm/sec)   p_kst 1.226994e-06   p_cons 3.311791e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.249314e-06	k: 0	n:1640000
Cons ci ratio: 4.349389e-03	ci left: 3.305187e-01	ci right 3.319600e-01	k: 543232	n:1640000
KS ci ratio: 2.263210e+00	ci left: 1.476886e-07	ci right 4.405290e-06	k: 2	n:1640000
POM121   1640000 perm   1548 sec   (1060 perm/sec)   p_kst 1.219512e-06   p_cons 3.312390e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.235682e-06	k: 0	n:1650000
Cons ci ratio: 4.336203e-03	ci left: 3.305194e-01	ci right 3.319563e-01	k: 546542	n:1650000
KS ci ratio: 2.263210e+00	ci left: 1.467935e-07	ci right 4.378592e-06	k: 2	n:1650000
POM121   1650000 perm   1562 sec   (1056 perm/sec)   p_kst 1.212121e-06   p_cons 3.312376e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.222214e-06	k: 0	n:1660000
Cons ci ratio: 4.323313e-03	ci left: 3.305021e-01	ci right 3.319346e-01	k: 549822	n:1660000
KS ci ratio: 2.263210e+00	ci left: 1.459092e-07	ci right 4.352215e-06	k: 2	n:1660000
POM121   1660000 perm   1582 sec   (1049 perm/sec)   p_kst 1.204819e-06   p_cons 3.312181e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.208907e-06	k: 0	n:1670000
Cons ci ratio: 4.310333e-03	ci left: 3.305059e-01	ci right 3.319342e-01	k: 553137	n:1670000
KS ci ratio: 2.263210e+00	ci left: 1.450355e-07	ci right 4.326154e-06	k: 2	n:1670000
POM121   1670000 perm   1600 sec   (1043 perm/sec)   p_kst 1.197605e-06   p_cons 3.312198e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.195759e-06	k: 0	n:1680000
Cons ci ratio: 4.297550e-03	ci left: 3.305014e-01	ci right 3.319254e-01	k: 556438	n:1680000
KS ci ratio: 2.263210e+00	ci left: 1.441722e-07	ci right 4.300403e-06	k: 2	n:1680000
POM121   1680000 perm   1619 sec   (1038 perm/sec)   p_kst 1.190476e-06   p_cons 3.312131e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.182767e-06	k: 0	n:1690000
Cons ci ratio: 4.284732e-03	ci left: 3.305123e-01	ci right 3.319321e-01	k: 559765	n:1690000
KS ci ratio: 2.263210e+00	ci left: 1.433191e-07	ci right 4.274957e-06	k: 2	n:1690000
POM121   1690000 perm   1634 sec   (1034 perm/sec)   p_kst 1.183432e-06   p_cons 3.312219e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.169927e-06	k: 0	n:1700000
Cons ci ratio: 4.271988e-03	ci left: 3.305272e-01	ci right 3.319428e-01	k: 563099	n:1700000
KS ci ratio: 2.263210e+00	ci left: 1.424761e-07	ci right 4.249810e-06	k: 2	n:1700000
POM121   1700000 perm   1650 sec   (1031 perm/sec)   p_kst 1.176471e-06   p_cons 3.312347e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.157237e-06	k: 0	n:1710000
Cons ci ratio: 4.259547e-03	ci left: 3.305221e-01	ci right 3.319335e-01	k: 566399	n:1710000
KS ci ratio: 2.263210e+00	ci left: 1.416429e-07	ci right 4.224957e-06	k: 2	n:1710000
POM121   1710000 perm   1667 sec   (1026 perm/sec)   p_kst 1.169591e-06   p_cons 3.312275e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.144695e-06	k: 0	n:1720000
Cons ci ratio: 4.247583e-03	ci left: 3.304786e-01	ci right 3.318859e-01	k: 569633	n:1720000
KS ci ratio: 2.263210e+00	ci left: 1.408194e-07	ci right 4.200393e-06	k: 2	n:1720000
POM121   1720000 perm   1683 sec   (1022 perm/sec)   p_kst 1.162791e-06   p_cons 3.311820e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.132298e-06	k: 0	n:1730000
Cons ci ratio: 4.234736e-03	ci left: 3.305385e-01	ci right 3.319418e-01	k: 573045	n:1730000
KS ci ratio: 2.263210e+00	ci left: 1.400054e-07	ci right 4.176114e-06	k: 2	n:1730000
POM121   1730000 perm   1701 sec   (1017 perm/sec)   p_kst 1.156069e-06   p_cons 3.312399e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.120043e-06	k: 0	n:1740000
Cons ci ratio: 4.222815e-03	ci left: 3.305128e-01	ci right 3.319119e-01	k: 576309	n:1740000
KS ci ratio: 2.263210e+00	ci left: 1.392008e-07	ci right 4.152113e-06	k: 2	n:1740000
POM121   1740000 perm   1717 sec   (1013 perm/sec)   p_kst 1.149425e-06   p_cons 3.312121e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.107929e-06	k: 0	n:1750000
Cons ci ratio: 4.210689e-03	ci left: 3.305193e-01	ci right 3.319144e-01	k: 579629	n:1750000
KS ci ratio: 2.263210e+00	ci left: 1.384053e-07	ci right 4.128387e-06	k: 2	n:1750000
POM121   1750000 perm   1735 sec   (1009 perm/sec)   p_kst 1.142857e-06   p_cons 3.312166e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.095952e-06	k: 0	n:1760000
Cons ci ratio: 4.198646e-03	ci left: 3.305280e-01	ci right 3.319192e-01	k: 582953	n:1760000
KS ci ratio: 2.263210e+00	ci left: 1.376189e-07	ci right 4.104930e-06	k: 2	n:1760000
POM121   1760000 perm   1751 sec   (1005 perm/sec)   p_kst 1.136364e-06   p_cons 3.312233e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.084111e-06	k: 0	n:1770000
Cons ci ratio: 4.186749e-03	ci left: 3.305321e-01	ci right 3.319193e-01	k: 586269	n:1770000
KS ci ratio: 2.263210e+00	ci left: 1.368414e-07	ci right 4.081738e-06	k: 2	n:1770000
POM121   1770000 perm   1767 sec   (1001 perm/sec)   p_kst 1.129944e-06   p_cons 3.312254e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.072402e-06	k: 0	n:1780000
Cons ci ratio: 4.174730e-03	ci left: 3.305597e-01	ci right 3.319431e-01	k: 589627	n:1780000
KS ci ratio: 2.263211e+00	ci left: 1.360727e-07	ci right 4.058807e-06	k: 2	n:1780000
POM121   1780000 perm   1785 sec   (997 perm/sec)   p_kst 1.123596e-06   p_cons 3.312511e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.060824e-06	k: 0	n:1790000
Cons ci ratio: 4.163580e-03	ci left: 3.305055e-01	ci right 3.318850e-01	k: 592839	n:1790000
KS ci ratio: 2.263211e+00	ci left: 1.353125e-07	ci right 4.036132e-06	k: 2	n:1790000
POM121   1790000 perm   1805 sec   (992 perm/sec)   p_kst 1.117318e-06   p_cons 3.311950e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.049375e-06	k: 0	n:1800000
Cons ci ratio: 4.152165e-03	ci left: 3.304897e-01	ci right 3.318653e-01	k: 596119	n:1800000
KS ci ratio: 2.263211e+00	ci left: 1.345607e-07	ci right 4.013710e-06	k: 2	n:1800000
POM121   1800000 perm   1820 sec   (989 perm/sec)   p_kst 1.111111e-06   p_cons 3.311772e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.038053e-06	k: 0	n:1810000
Cons ci ratio: 4.140894e-03	ci left: 3.304685e-01	ci right 3.318403e-01	k: 599389	n:1810000
KS ci ratio: 2.263211e+00	ci left: 1.338173e-07	ci right 3.991534e-06	k: 2	n:1810000
POM121   1810000 perm   1839 sec   (984 perm/sec)   p_kst 1.104972e-06   p_cons 3.311541e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.026855e-06	k: 0	n:1820000
Cons ci ratio: 4.129075e-03	ci left: 3.305162e-01	ci right 3.318843e-01	k: 602784	n:1820000
KS ci ratio: 2.263211e+00	ci left: 1.330820e-07	ci right 3.969603e-06	k: 2	n:1820000
POM121   1820000 perm   1855 sec   (981 perm/sec)   p_kst 1.098901e-06   p_cons 3.312000e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.015779e-06	k: 0	n:1830000
Cons ci ratio: 4.118012e-03	ci left: 3.304930e-01	ci right 3.318573e-01	k: 606050	n:1830000
KS ci ratio: 2.263211e+00	ci left: 1.323548e-07	ci right 3.947911e-06	k: 2	n:1830000
POM121   1830000 perm   1871 sec   (978 perm/sec)   p_kst 1.092896e-06   p_cons 3.311749e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.004824e-06	k: 0	n:1840000
Cons ci ratio: 4.106619e-03	ci left: 3.305151e-01	ci right 3.318757e-01	k: 609399	n:1840000
KS ci ratio: 2.263211e+00	ci left: 1.316355e-07	ci right 3.926455e-06	k: 2	n:1840000
POM121   1840000 perm   1888 sec   (974 perm/sec)   p_kst 1.086957e-06   p_cons 3.311951e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.993987e-06	k: 0	n:1850000
Cons ci ratio: 4.095425e-03	ci left: 3.305256e-01	ci right 3.318825e-01	k: 612727	n:1850000
KS ci ratio: 2.263211e+00	ci left: 1.309240e-07	ci right 3.905231e-06	k: 2	n:1850000
POM121   1850000 perm   1907 sec   (970 perm/sec)   p_kst 1.081081e-06   p_cons 3.312038e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.983267e-06	k: 0	n:1860000
Cons ci ratio: 4.084326e-03	ci left: 3.305354e-01	ci right 3.318887e-01	k: 616054	n:1860000
KS ci ratio: 2.263211e+00	ci left: 1.302201e-07	ci right 3.884235e-06	k: 2	n:1860000
POM121   1860000 perm   1924 sec   (967 perm/sec)   p_kst 1.075269e-06   p_cons 3.312118e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.972661e-06	k: 0	n:1870000
Cons ci ratio: 4.073593e-03	ci left: 3.305153e-01	ci right 3.318649e-01	k: 619325	n:1870000
KS ci ratio: 2.263211e+00	ci left: 1.295237e-07	ci right 3.863464e-06	k: 2	n:1870000
POM121   1870000 perm   1943 sec   (962 perm/sec)   p_kst 1.069519e-06   p_cons 3.311898e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.962168e-06	k: 0	n:1880000
Cons ci ratio: 4.062822e-03	ci left: 3.305086e-01	ci right 3.318547e-01	k: 622621	n:1880000
KS ci ratio: 2.263211e+00	ci left: 1.288347e-07	ci right 3.842914e-06	k: 2	n:1880000
POM121   1880000 perm   1964 sec   (957 perm/sec)   p_kst 1.063830e-06   p_cons 3.311814e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.951786e-06	k: 0	n:1890000
Cons ci ratio: 4.052035e-03	ci left: 3.305131e-01	ci right 3.318556e-01	k: 625938	n:1890000
KS ci ratio: 2.263211e+00	ci left: 1.281531e-07	ci right 3.822581e-06	k: 2	n:1890000
POM121   1890000 perm   1981 sec   (954 perm/sec)   p_kst 1.058201e-06   p_cons 3.311841e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.941514e-06	k: 0	n:1900000
Cons ci ratio: 4.041194e-03	ci left: 3.305329e-01	ci right 3.318718e-01	k: 629284	n:1900000
KS ci ratio: 2.263211e+00	ci left: 1.274786e-07	ci right 3.802462e-06	k: 2	n:1900000
POM121   1900000 perm   2002 sec   (949 perm/sec)   p_kst 1.052632e-06   p_cons 3.312021e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.931349e-06	k: 0	n:1910000
Cons ci ratio: 4.031177e-03	ci left: 3.304713e-01	ci right 3.318067e-01	k: 632475	n:1910000
KS ci ratio: 2.263211e+00	ci left: 1.268112e-07	ci right 3.782554e-06	k: 2	n:1910000
POM121   1910000 perm   2021 sec   (945 perm/sec)   p_kst 1.047120e-06   p_cons 3.311387e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.921290e-06	k: 0	n:1920000
Cons ci ratio: 4.020592e-03	ci left: 3.304812e-01	ci right 3.318131e-01	k: 635802	n:1920000
KS ci ratio: 2.263211e+00	ci left: 1.261507e-07	ci right 3.762853e-06	k: 2	n:1920000
POM121   1920000 perm   2040 sec   (941 perm/sec)   p_kst 1.041667e-06   p_cons 3.311469e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.911335e-06	k: 0	n:1930000
Cons ci ratio: 4.010286e-03	ci left: 3.304692e-01	ci right 3.317976e-01	k: 639087	n:1930000
KS ci ratio: 2.263211e+00	ci left: 1.254971e-07	ci right 3.743356e-06	k: 2	n:1930000
POM121   1930000 perm   2057 sec   (938 perm/sec)   p_kst 1.036269e-06   p_cons 3.311332e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.901482e-06	k: 0	n:1940000
Cons ci ratio: 3.999729e-03	ci left: 3.304939e-01	ci right 3.318190e-01	k: 642443	n:1940000
KS ci ratio: 2.263211e+00	ci left: 1.248502e-07	ci right 3.724061e-06	k: 2	n:1940000
POM121   1940000 perm   2078 sec   (933 perm/sec)   p_kst 1.030928e-06   p_cons 3.311562e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.891731e-06	k: 0	n:1950000
Cons ci ratio: 3.989431e-03	ci left: 3.304989e-01	ci right 3.318206e-01	k: 645761	n:1950000
KS ci ratio: 2.263211e+00	ci left: 1.242099e-07	ci right 3.704963e-06	k: 2	n:1950000
POM121   1950000 perm   2104 sec   (927 perm/sec)   p_kst 1.025641e-06   p_cons 3.311595e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.882080e-06	k: 0	n:1960000
Cons ci ratio: 3.979133e-03	ci left: 3.305125e-01	ci right 3.318308e-01	k: 649096	n:1960000
KS ci ratio: 2.263211e+00	ci left: 1.235762e-07	ci right 3.686060e-06	k: 2	n:1960000
POM121   1960000 perm   2124 sec   (923 perm/sec)   p_kst 1.020408e-06   p_cons 3.311714e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.872526e-06	k: 0	n:1970000
Cons ci ratio: 3.969029e-03	ci left: 3.305134e-01	ci right 3.318283e-01	k: 652406	n:1970000
KS ci ratio: 2.263211e+00	ci left: 1.229489e-07	ci right 3.667349e-06	k: 2	n:1970000
POM121   1970000 perm   2150 sec   (916 perm/sec)   p_kst 1.015228e-06   p_cons 3.311706e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.863069e-06	k: 0	n:1980000
Cons ci ratio: 3.959385e-03	ci left: 3.304712e-01	ci right 3.317828e-01	k: 655631	n:1980000
KS ci ratio: 2.263211e+00	ci left: 1.223279e-07	ci right 3.648827e-06	k: 2	n:1980000
POM121   1980000 perm   2174 sec   (911 perm/sec)   p_kst 1.010101e-06   p_cons 3.311268e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.853707e-06	k: 0	n:1990000
Cons ci ratio: 3.949349e-03	ci left: 3.304813e-01	ci right 3.317895e-01	k: 658959	n:1990000
KS ci ratio: 2.263211e+00	ci left: 1.217132e-07	ci right 3.630492e-06	k: 2	n:1990000
POM121   1990000 perm   2198 sec   (905 perm/sec)   p_kst 1.005025e-06   p_cons 3.311352e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.844438e-06	k: 0	n:2000000
Cons ci ratio: 3.939318e-03	ci left: 3.304993e-01	ci right 3.318042e-01	k: 662303	n:2000000
KS ci ratio: 2.263211e+00	ci left: 1.211047e-07	ci right 3.612339e-06	k: 2	n:2000000
POM121   2000000 perm   2220 sec   (901 perm/sec)   p_kst 1.000000e-06   p_cons 3.311515e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.835262e-06	k: 0	n:2010000
Cons ci ratio: 3.929540e-03	ci left: 3.304971e-01	ci right 3.317989e-01	k: 665607	n:2010000
KS ci ratio: 2.263211e+00	ci left: 1.205022e-07	ci right 3.594367e-06	k: 2	n:2010000
POM121   2010000 perm   2241 sec   (897 perm/sec)   p_kst 9.950249e-07   p_cons 3.311478e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.826176e-06	k: 0	n:2020000
Cons ci ratio: 3.919922e-03	ci left: 3.304852e-01	ci right 3.317836e-01	k: 668891	n:2020000
KS ci ratio: 2.263211e+00	ci left: 1.199056e-07	ci right 3.576573e-06	k: 2	n:2020000
POM121   2020000 perm   2261 sec   (893 perm/sec)   p_kst 9.900990e-07   p_cons 3.311342e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.817180e-06	k: 0	n:2030000
Cons ci ratio: 3.910504e-03	ci left: 3.304585e-01	ci right 3.317538e-01	k: 672145	n:2030000
KS ci ratio: 2.263211e+00	ci left: 1.193149e-07	ci right 3.558955e-06	k: 2	n:2030000
POM121   2030000 perm   2279 sec   (891 perm/sec)   p_kst 9.852217e-07   p_cons 3.311059e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.808273e-06	k: 0	n:2040000
Cons ci ratio: 3.900943e-03	ci left: 3.304562e-01	ci right 3.317482e-01	k: 675448	n:2040000
KS ci ratio: 2.263211e+00	ci left: 1.187301e-07	ci right 3.541509e-06	k: 2	n:2040000
POM121   2040000 perm   2296 sec   (889 perm/sec)   p_kst 9.803922e-07   p_cons 3.311020e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.799452e-06	k: 0	n:2050000
Cons ci ratio: 3.891305e-03	ci left: 3.304704e-01	ci right 3.317593e-01	k: 678785	n:2050000
KS ci ratio: 2.263211e+00	ci left: 1.181509e-07	ci right 3.524233e-06	k: 2	n:2050000
POM121   2050000 perm   2317 sec   (885 perm/sec)   p_kst 9.756098e-07   p_cons 3.311146e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.790717e-06	k: 0	n:2060000
Cons ci ratio: 3.881952e-03	ci left: 3.304603e-01	ci right 3.317460e-01	k: 682072	n:2060000
KS ci ratio: 2.263211e+00	ci left: 1.175773e-07	ci right 3.507125e-06	k: 2	n:2060000
POM121   2060000 perm   2337 sec   (881 perm/sec)   p_kst 9.708738e-07   p_cons 3.311029e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.782066e-06	k: 0	n:2070000
Cons ci ratio: 3.872534e-03	ci left: 3.304652e-01	ci right 3.317479e-01	k: 685390	n:2070000
KS ci ratio: 2.263211e+00	ci left: 1.170093e-07	ci right 3.490183e-06	k: 2	n:2070000
POM121   2070000 perm   2361 sec   (877 perm/sec)   p_kst 9.661836e-07   p_cons 3.311063e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.773498e-06	k: 0	n:2080000
Cons ci ratio: 3.863265e-03	ci left: 3.304609e-01	ci right 3.317405e-01	k: 688689	n:2080000
KS ci ratio: 2.263211e+00	ci left: 1.164468e-07	ci right 3.473403e-06	k: 2	n:2080000
POM121   2080000 perm   2386 sec   (872 perm/sec)   p_kst 9.615385e-07   p_cons 3.311005e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.765013e-06	k: 0	n:2090000
Cons ci ratio: 3.854411e-03	ci left: 3.304165e-01	ci right 3.316930e-01	k: 691904	n:2090000
KS ci ratio: 2.263211e+00	ci left: 1.158896e-07	ci right 3.456784e-06	k: 2	n:2090000
POM121   2090000 perm   2405 sec   (869 perm/sec)   p_kst 9.569378e-07   p_cons 3.310545e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.756608e-06	k: 0	n:2100000
Cons ci ratio: 3.845134e-03	ci left: 3.304283e-01	ci right 3.317017e-01	k: 695236	n:2100000
KS ci ratio: 2.263211e+00	ci left: 1.153378e-07	ci right 3.440323e-06	k: 2	n:2100000
POM121   2100000 perm   2428 sec   (865 perm/sec)   p_kst 9.523810e-07   p_cons 3.310648e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.748283e-06	k: 0	n:2110000
Cons ci ratio: 3.836060e-03	ci left: 3.304243e-01	ci right 3.316947e-01	k: 698535	n:2110000
KS ci ratio: 2.263211e+00	ci left: 1.147911e-07	ci right 3.424018e-06	k: 2	n:2110000
POM121   2110000 perm   2449 sec   (862 perm/sec)   p_kst 9.478673e-07   p_cons 3.310592e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.740036e-06	k: 0	n:2120000
Cons ci ratio: 3.827033e-03	ci left: 3.304222e-01	ci right 3.316896e-01	k: 701838	n:2120000
KS ci ratio: 2.263211e+00	ci left: 1.142497e-07	ci right 3.407867e-06	k: 2	n:2120000
POM121   2120000 perm   2469 sec   (859 perm/sec)   p_kst 9.433962e-07   p_cons 3.310557e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.731867e-06	k: 0	n:2130000
Cons ci ratio: 3.817628e-03	ci left: 3.304713e-01	ci right 3.317358e-01	k: 705250	n:2130000
KS ci ratio: 2.263211e+00	ci left: 1.137133e-07	ci right 3.391868e-06	k: 2	n:2130000
POM121   2130000 perm   2490 sec   (855 perm/sec)   p_kst 9.389671e-07   p_cons 3.311033e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.723774e-06	k: 0	n:2140000
Cons ci ratio: 3.808734e-03	ci left: 3.304685e-01	ci right 3.317301e-01	k: 708552	n:2140000
KS ci ratio: 2.263211e+00	ci left: 1.131819e-07	ci right 3.376018e-06	k: 2	n:2140000
POM121   2140000 perm   2512 sec   (852 perm/sec)   p_kst 9.345794e-07   p_cons 3.310991e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.715756e-06	k: 0	n:2150000
Cons ci ratio: 3.799619e-03	ci left: 3.304988e-01	ci right 3.317574e-01	k: 711925	n:2150000
KS ci ratio: 2.263211e+00	ci left: 1.126555e-07	ci right 3.360316e-06	k: 2	n:2150000
POM121   2150000 perm   2534 sec   (848 perm/sec)   p_kst 9.302326e-07   p_cons 3.311279e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.707813e-06	k: 0	n:2160000
Cons ci ratio: 3.790688e-03	ci left: 3.305150e-01	ci right 3.317707e-01	k: 715268	n:2160000
KS ci ratio: 2.263211e+00	ci left: 1.121339e-07	ci right 3.344759e-06	k: 2	n:2160000
POM121   2160000 perm   2556 sec   (845 perm/sec)   p_kst 9.259259e-07   p_cons 3.311426e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.699943e-06	k: 0	n:2170000
Cons ci ratio: 3.781917e-03	ci left: 3.305194e-01	ci right 3.317722e-01	k: 718586	n:2170000
KS ci ratio: 2.263211e+00	ci left: 1.116172e-07	ci right 3.329345e-06	k: 2	n:2170000
POM121   2170000 perm   2577 sec   (842 perm/sec)   p_kst 9.216590e-07   p_cons 3.311456e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.692145e-06	k: 0	n:2180000
Cons ci ratio: 3.773309e-03	ci left: 3.305120e-01	ci right 3.317619e-01	k: 721878	n:2180000
KS ci ratio: 2.263211e+00	ci left: 1.111052e-07	ci right 3.314073e-06	k: 2	n:2180000
POM121   2180000 perm   2595 sec   (840 perm/sec)   p_kst 9.174312e-07   p_cons 3.311367e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.684418e-06	k: 0	n:2190000
Cons ci ratio: 3.764845e-03	ci left: 3.304945e-01	ci right 3.317416e-01	k: 725148	n:2190000
KS ci ratio: 2.263211e+00	ci left: 1.105979e-07	ci right 3.298940e-06	k: 2	n:2190000
POM121   2190000 perm   2615 sec   (838 perm/sec)   p_kst 9.132420e-07   p_cons 3.311178e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.676762e-06	k: 0	n:2200000
Cons ci ratio: 3.756522e-03	ci left: 3.304672e-01	ci right 3.317114e-01	k: 728396	n:2200000
KS ci ratio: 2.263211e+00	ci left: 1.100951e-07	ci right 3.283945e-06	k: 2	n:2200000
POM121   2200000 perm   2634 sec   (835 perm/sec)   p_kst 9.090909e-07   p_cons 3.310891e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.669175e-06	k: 0	n:2210000
Cons ci ratio: 3.748308e-03	ci left: 3.304339e-01	ci right 3.316752e-01	k: 731630	n:2210000
KS ci ratio: 2.263211e+00	ci left: 1.095970e-07	ci right 3.269086e-06	k: 2	n:2210000
POM121   2210000 perm   2657 sec   (832 perm/sec)   p_kst 9.049774e-07   p_cons 3.310543e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.661656e-06	k: 0	n:2220000
Cons ci ratio: 3.740037e-03	ci left: 3.304139e-01	ci right 3.316524e-01	k: 734893	n:2220000
KS ci ratio: 2.263211e+00	ci left: 1.091033e-07	ci right 3.254360e-06	k: 2	n:2220000
POM121   2220000 perm   2677 sec   (829 perm/sec)   p_kst 9.009009e-07   p_cons 3.310329e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.654205e-06	k: 0	n:2230000
Cons ci ratio: 3.732018e-03	ci left: 3.303707e-01	ci right 3.316064e-01	k: 738104	n:2230000
KS ci ratio: 2.263211e+00	ci left: 1.086140e-07	ci right 3.239766e-06	k: 2	n:2230000
POM121   2230000 perm   2697 sec   (827 perm/sec)   p_kst 8.968610e-07   p_cons 3.309883e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.646820e-06	k: 0	n:2240000
Cons ci ratio: 3.723640e-03	ci left: 3.303766e-01	ci right 3.316095e-01	k: 741424	n:2240000
KS ci ratio: 2.263211e+00	ci left: 1.081292e-07	ci right 3.225303e-06	k: 2	n:2240000
POM121   2240000 perm   2727 sec   (821 perm/sec)   p_kst 8.928571e-07   p_cons 3.309929e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.639501e-06	k: 0	n:2250000
Cons ci ratio: 3.715229e-03	ci left: 3.303931e-01	ci right 3.316233e-01	k: 744768	n:2250000
KS ci ratio: 2.263211e+00	ci left: 1.076486e-07	ci right 3.210969e-06	k: 2	n:2250000
POM121   2250000 perm   2758 sec   (816 perm/sec)   p_kst 8.888889e-07   p_cons 3.310080e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.632246e-06	k: 0	n:2260000
Cons ci ratio: 3.707127e-03	ci left: 3.303794e-01	ci right 3.316069e-01	k: 748044	n:2260000
KS ci ratio: 2.771857e+00	ci left: 1.120257e-08	ci right 2.465326e-06	k: 1	n:2260000
POM121   2260000 perm   2791 sec   (810 perm/sec)   p_kst 4.424779e-07   p_cons 3.309929e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.625056e-06	k: 0	n:2270000
Cons ci ratio: 3.699180e-03	ci left: 3.303535e-01	ci right 3.315782e-01	k: 751292	n:2270000
KS ci ratio: 2.771857e+00	ci left: 1.115322e-08	ci right 2.454466e-06	k: 1	n:2270000
POM121   2270000 perm   2819 sec   (805 perm/sec)   p_kst 4.405286e-07   p_cons 3.309656e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.617928e-06	k: 0	n:2280000
Cons ci ratio: 3.691138e-03	ci left: 3.303453e-01	ci right 3.315674e-01	k: 754580	n:2280000
KS ci ratio: 2.771857e+00	ci left: 1.110430e-08	ci right 2.443701e-06	k: 1	n:2280000
POM121   2280000 perm   2849 sec   (800 perm/sec)   p_kst 4.385965e-07   p_cons 3.309561e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.610863e-06	k: 0	n:2290000
Cons ci ratio: 3.683156e-03	ci left: 3.303364e-01	ci right 3.315557e-01	k: 757866	n:2290000
KS ci ratio: 2.771857e+00	ci left: 1.105581e-08	ci right 2.433030e-06	k: 1	n:2290000
POM121   2290000 perm   2880 sec   (795 perm/sec)   p_kst 4.366812e-07   p_cons 3.309459e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.603859e-06	k: 0	n:2300000
Cons ci ratio: 3.675286e-03	ci left: 3.303201e-01	ci right 3.315368e-01	k: 761135	n:2300000
KS ci ratio: 2.771857e+00	ci left: 1.100774e-08	ci right 2.422451e-06	k: 1	n:2300000
POM121   2300000 perm   2909 sec   (791 perm/sec)   p_kst 4.347826e-07   p_cons 3.309283e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.596916e-06	k: 0	n:2310000
Cons ci ratio: 3.667226e-03	ci left: 3.303330e-01	ci right 3.315471e-01	k: 764471	n:2310000
KS ci ratio: 2.771857e+00	ci left: 1.096009e-08	ci right 2.411964e-06	k: 1	n:2310000
POM121   2310000 perm   2935 sec   (787 perm/sec)   p_kst 4.329004e-07   p_cons 3.309398e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.590033e-06	k: 0	n:2320000
Cons ci ratio: 3.659205e-03	ci left: 3.303475e-01	ci right 3.315589e-01	k: 767811	n:2320000
KS ci ratio: 2.771857e+00	ci left: 1.091285e-08	ci right 2.401568e-06	k: 1	n:2320000
POM121   2320000 perm   2965 sec   (782 perm/sec)   p_kst 4.310345e-07   p_cons 3.309530e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.583209e-06	k: 0	n:2330000
Cons ci ratio: 3.651598e-03	ci left: 3.303181e-01	ci right 3.315269e-01	k: 771049	n:2330000
KS ci ratio: 2.771857e+00	ci left: 1.086601e-08	ci right 2.391261e-06	k: 1	n:2330000
POM121   2330000 perm   2993 sec   (778 perm/sec)   p_kst 4.291845e-07   p_cons 3.309223e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.576443e-06	k: 0	n:2340000
Cons ci ratio: 3.643942e-03	ci left: 3.303005e-01	ci right 3.315067e-01	k: 774314	n:2340000
KS ci ratio: 2.771857e+00	ci left: 1.081958e-08	ci right 2.381042e-06	k: 1	n:2340000
POM121   2340000 perm   3017 sec   (775 perm/sec)   p_kst 4.273504e-07   p_cons 3.309034e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.569735e-06	k: 0	n:2350000
Cons ci ratio: 3.636618e-03	ci left: 3.302486e-01	ci right 3.314522e-01	k: 777498	n:2350000
KS ci ratio: 2.771857e+00	ci left: 1.077354e-08	ci right 2.370910e-06	k: 1	n:2350000
POM121   2350000 perm   3044 sec   (772 perm/sec)   p_kst 4.255319e-07   p_cons 3.308502e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.563083e-06	k: 0	n:2360000
Cons ci ratio: 3.629008e-03	ci left: 3.302374e-01	ci right 3.314384e-01	k: 780777	n:2360000
KS ci ratio: 2.771857e+00	ci left: 1.072788e-08	ci right 2.360864e-06	k: 1	n:2360000
POM121   2360000 perm   3072 sec   (768 perm/sec)   p_kst 4.237288e-07   p_cons 3.308377e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.556488e-06	k: 0	n:2370000
Cons ci ratio: 3.621434e-03	ci left: 3.302276e-01	ci right 3.314260e-01	k: 784059	n:2370000
KS ci ratio: 2.771857e+00	ci left: 1.068262e-08	ci right 2.350902e-06	k: 1	n:2370000
POM121   2370000 perm   3100 sec   (764 perm/sec)   p_kst 4.219409e-07   p_cons 3.308266e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.549948e-06	k: 0	n:2380000
Cons ci ratio: 3.613579e-03	ci left: 3.302581e-01	ci right 3.314541e-01	k: 787437	n:2380000
KS ci ratio: 2.771857e+00	ci left: 1.063773e-08	ci right 2.341024e-06	k: 1	n:2380000
POM121   2380000 perm   3131 sec   (760 perm/sec)   p_kst 4.201681e-07   p_cons 3.308559e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.543463e-06	k: 0	n:2390000
Cons ci ratio: 3.605615e-03	ci left: 3.303081e-01	ci right 3.315016e-01	k: 790862	n:2390000
KS ci ratio: 2.771857e+00	ci left: 1.059323e-08	ci right 2.331229e-06	k: 1	n:2390000
POM121   2390000 perm   3158 sec   (757 perm/sec)   p_kst 4.184100e-07   p_cons 3.309046e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.537032e-06	k: 0	n:2400000
Cons ci ratio: 3.597974e-03	ci left: 3.303243e-01	ci right 3.315153e-01	k: 794207	n:2400000
KS ci ratio: 2.771857e+00	ci left: 1.054909e-08	ci right 2.321516e-06	k: 1	n:2400000
POM121   2400000 perm   3186 sec   (753 perm/sec)   p_kst 4.166667e-07   p_cons 3.309196e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.530654e-06	k: 0	n:2410000
Cons ci ratio: 3.590434e-03	ci left: 3.303337e-01	ci right 3.315223e-01	k: 797536	n:2410000
KS ci ratio: 2.771857e+00	ci left: 1.050531e-08	ci right 2.311883e-06	k: 1	n:2410000
POM121   2410000 perm   3213 sec   (750 perm/sec)   p_kst 4.149378e-07   p_cons 3.309278e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.524329e-06	k: 0	n:2420000
Cons ci ratio: 3.582983e-03	ci left: 3.303381e-01	ci right 3.315243e-01	k: 800853	n:2420000
KS ci ratio: 2.771857e+00	ci left: 1.046190e-08	ci right 2.302330e-06	k: 1	n:2420000
POM121   2420000 perm   3240 sec   (747 perm/sec)   p_kst 4.132231e-07   p_cons 3.309310e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.518056e-06	k: 0	n:2430000
Cons ci ratio: 3.575614e-03	ci left: 3.303380e-01	ci right 3.315217e-01	k: 804159	n:2430000
KS ci ratio: 2.771857e+00	ci left: 1.041885e-08	ci right 2.292855e-06	k: 1	n:2430000
POM121   2430000 perm   3263 sec   (745 perm/sec)   p_kst 4.115226e-07   p_cons 3.309296e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.511835e-06	k: 0	n:2440000
Cons ci ratio: 3.567976e-03	ci left: 3.303768e-01	ci right 3.315580e-01	k: 807560	n:2440000
KS ci ratio: 2.771857e+00	ci left: 1.037615e-08	ci right 2.283458e-06	k: 1	n:2440000
POM121   2440000 perm   3289 sec   (742 perm/sec)   p_kst 4.098361e-07   p_cons 3.309672e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.505664e-06	k: 0	n:2450000
Cons ci ratio: 3.560486e-03	ci left: 3.304030e-01	ci right 3.315819e-01	k: 810931	n:2450000
KS ci ratio: 2.771857e+00	ci left: 1.033380e-08	ci right 2.274138e-06	k: 1	n:2450000
POM121   2450000 perm   3313 sec   (739 perm/sec)   p_kst 4.081633e-07   p_cons 3.309922e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.499543e-06	k: 0	n:2460000
Cons ci ratio: 3.553173e-03	ci left: 3.304128e-01	ci right 3.315893e-01	k: 814262	n:2460000
KS ci ratio: 2.771857e+00	ci left: 1.029179e-08	ci right 2.264894e-06	k: 1	n:2460000
POM121   2460000 perm   3336 sec   (737 perm/sec)   p_kst 4.065041e-07   p_cons 3.310008e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.493472e-06	k: 0	n:2470000
Cons ci ratio: 3.546074e-03	ci left: 3.304014e-01	ci right 3.315755e-01	k: 817541	n:2470000
KS ci ratio: 2.771857e+00	ci left: 1.025012e-08	ci right 2.255724e-06	k: 1	n:2470000
POM121   2470000 perm   3360 sec   (735 perm/sec)   p_kst 4.048583e-07   p_cons 3.309883e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.487450e-06	k: 0	n:2480000
Cons ci ratio: 3.538859e-03	ci left: 3.304099e-01	ci right 3.315816e-01	k: 820869	n:2480000
KS ci ratio: 2.771857e+00	ci left: 1.020879e-08	ci right 2.246628e-06	k: 1	n:2480000
POM121   2480000 perm   3382 sec   (733 perm/sec)   p_kst 4.032258e-07   p_cons 3.309956e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.481477e-06	k: 0	n:2490000
Cons ci ratio: 3.531540e-03	ci left: 3.304368e-01	ci right 3.316062e-01	k: 824243	n:2490000
KS ci ratio: 2.771857e+00	ci left: 1.016779e-08	ci right 2.237606e-06	k: 1	n:2490000
POM121   2490000 perm   3407 sec   (731 perm/sec)   p_kst 4.016064e-07   p_cons 3.310213e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.475551e-06	k: 0	n:2500000
Cons ci ratio: 3.524426e-03	ci left: 3.304435e-01	ci right 3.316105e-01	k: 827567	n:2500000
KS ci ratio: 2.771857e+00	ci left: 1.012712e-08	ci right 2.228655e-06	k: 1	n:2500000
POM121   2500000 perm   3436 sec   (728 perm/sec)   p_kst 4.000000e-07   p_cons 3.310268e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.469672e-06	k: 0	n:2510000
Cons ci ratio: 3.517213e-03	ci left: 3.304680e-01	ci right 3.316328e-01	k: 830936	n:2510000
KS ci ratio: 2.771857e+00	ci left: 1.008678e-08	ci right 2.219776e-06	k: 1	n:2510000
POM121   2510000 perm   3463 sec   (725 perm/sec)   p_kst 3.984064e-07   p_cons 3.310502e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.463840e-06	k: 0	n:2520000
Cons ci ratio: 3.510279e-03	ci left: 3.304626e-01	ci right 3.316251e-01	k: 834230	n:2520000
KS ci ratio: 2.771857e+00	ci left: 1.004675e-08	ci right 2.210968e-06	k: 1	n:2520000
POM121   2520000 perm   3490 sec   (722 perm/sec)   p_kst 3.968254e-07   p_cons 3.310437e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.458054e-06	k: 0	n:2530000
Cons ci ratio: 3.503427e-03	ci left: 3.304521e-01	ci right 3.316123e-01	k: 837511	n:2530000
KS ci ratio: 2.771857e+00	ci left: 1.000704e-08	ci right 2.202229e-06	k: 1	n:2530000
POM121   2530000 perm   3514 sec   (720 perm/sec)   p_kst 3.952569e-07   p_cons 3.310320e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.452314e-06	k: 0	n:2540000
Cons ci ratio: 3.496422e-03	ci left: 3.304662e-01	ci right 3.316240e-01	k: 840854	n:2540000
KS ci ratio: 2.771857e+00	ci left: 9.967641e-09	ci right 2.193558e-06	k: 1	n:2540000
POM121   2540000 perm   3537 sec   (718 perm/sec)   p_kst 3.937008e-07   p_cons 3.310449e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.446618e-06	k: 0	n:2550000
Cons ci ratio: 3.489524e-03	ci left: 3.304718e-01	ci right 3.316274e-01	k: 844176	n:2550000
KS ci ratio: 2.771857e+00	ci left: 9.928552e-09	ci right 2.184956e-06	k: 1	n:2550000
POM121   2550000 perm   3561 sec   (716 perm/sec)   p_kst 3.921569e-07   p_cons 3.310494e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.440968e-06	k: 0	n:2560000
Cons ci ratio: 3.482507e-03	ci left: 3.304977e-01	ci right 3.316511e-01	k: 847550	n:2560000
KS ci ratio: 2.771857e+00	ci left: 9.889769e-09	ci right 2.176421e-06	k: 1	n:2560000
POM121   2560000 perm   3585 sec   (714 perm/sec)   p_kst 3.906250e-07   p_cons 3.310742e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.435361e-06	k: 0	n:2570000
Cons ci ratio: 3.475584e-03	ci left: 3.305169e-01	ci right 3.316680e-01	k: 850907	n:2570000
KS ci ratio: 2.771857e+00	ci left: 9.851287e-09	ci right 2.167953e-06	k: 1	n:2570000
POM121   2570000 perm   3609 sec   (712 perm/sec)   p_kst 3.891051e-07   p_cons 3.310922e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.429797e-06	k: 0	n:2580000
Cons ci ratio: 3.468814e-03	ci left: 3.305215e-01	ci right 3.316704e-01	k: 854227	n:2580000
KS ci ratio: 2.771857e+00	ci left: 9.813104e-09	ci right 2.159550e-06	k: 1	n:2580000
POM121   2580000 perm   3633 sec   (710 perm/sec)   p_kst 3.875969e-07   p_cons 3.310957e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.424277e-06	k: 0	n:2590000
Cons ci ratio: 3.462328e-03	ci left: 3.304948e-01	ci right 3.316415e-01	k: 857466	n:2590000
KS ci ratio: 2.771857e+00	ci left: 9.775216e-09	ci right 2.151212e-06	k: 1	n:2590000
POM121   2590000 perm   3657 sec   (708 perm/sec)   p_kst 3.861004e-07   p_cons 3.310680e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.418799e-06	k: 0	n:2600000
Cons ci ratio: 3.455317e-03	ci left: 3.305403e-01	ci right 3.316847e-01	k: 860892	n:2600000
KS ci ratio: 2.771857e+00	ci left: 9.737618e-09	ci right 2.142938e-06	k: 1	n:2600000
POM121   2600000 perm   3680 sec   (706 perm/sec)   p_kst 3.846154e-07   p_cons 3.311123e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.413363e-06	k: 0	n:2610000
Cons ci ratio: 3.448638e-03	ci left: 3.305482e-01	ci right 3.316905e-01	k: 864221	n:2610000
KS ci ratio: 2.771857e+00	ci left: 9.700310e-09	ci right 2.134727e-06	k: 1	n:2610000
POM121   2610000 perm   3705 sec   (704 perm/sec)   p_kst 3.831418e-07   p_cons 3.311192e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.407968e-06	k: 0	n:2620000
Cons ci ratio: 3.442241e-03	ci left: 3.305248e-01	ci right 3.316649e-01	k: 867468	n:2620000
KS ci ratio: 2.771857e+00	ci left: 9.663285e-09	ci right 2.126580e-06	k: 1	n:2620000
POM121   2620000 perm   3731 sec   (702 perm/sec)   p_kst 3.816794e-07   p_cons 3.310947e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.402615e-06	k: 0	n:2630000
Cons ci ratio: 3.435853e-03	ci left: 3.305050e-01	ci right 3.316429e-01	k: 870724	n:2630000
KS ci ratio: 2.771857e+00	ci left: 9.626543e-09	ci right 2.118494e-06	k: 1	n:2630000
POM121   2630000 perm   3756 sec   (700 perm/sec)   p_kst 3.802281e-07   p_cons 3.310738e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.397302e-06	k: 0	n:2640000
Cons ci ratio: 3.429180e-03	ci left: 3.305266e-01	ci right 3.316624e-01	k: 874089	n:2640000
KS ci ratio: 2.771857e+00	ci left: 9.590079e-09	ci right 2.110469e-06	k: 1	n:2640000
POM121   2640000 perm   3779 sec   (699 perm/sec)   p_kst 3.787879e-07   p_cons 3.310943e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.392029e-06	k: 0	n:2650000
Cons ci ratio: 3.422704e-03	ci left: 3.305277e-01	ci right 3.316613e-01	k: 877400	n:2650000
KS ci ratio: 2.771857e+00	ci left: 9.553890e-09	ci right 2.102505e-06	k: 1	n:2650000
POM121   2650000 perm   3803 sec   (697 perm/sec)   p_kst 3.773585e-07   p_cons 3.310943e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.386796e-06	k: 0	n:2660000
Cons ci ratio: 3.416276e-03	ci left: 3.305273e-01	ci right 3.316588e-01	k: 880707	n:2660000
KS ci ratio: 2.771857e+00	ci left: 9.517973e-09	ci right 2.094601e-06	k: 1	n:2660000
POM121   2660000 perm   3828 sec   (695 perm/sec)   p_kst 3.759398e-07   p_cons 3.310929e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.381602e-06	k: 0	n:2670000
Cons ci ratio: 3.409964e-03	ci left: 3.305164e-01	ci right 3.316457e-01	k: 883986	n:2670000
KS ci ratio: 2.771857e+00	ci left: 9.482325e-09	ci right 2.086756e-06	k: 1	n:2670000
POM121   2670000 perm   3852 sec   (693 perm/sec)   p_kst 3.745318e-07   p_cons 3.310809e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.376447e-06	k: 0	n:2680000
Cons ci ratio: 3.403579e-03	ci left: 3.305198e-01	ci right 3.316470e-01	k: 887303	n:2680000
KS ci ratio: 2.771857e+00	ci left: 9.446943e-09	ci right 2.078970e-06	k: 1	n:2680000
POM121   2680000 perm   3876 sec   (691 perm/sec)   p_kst 3.731343e-07   p_cons 3.310832e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.371330e-06	k: 0	n:2690000
Cons ci ratio: 3.397157e-03	ci left: 3.305324e-01	ci right 3.316575e-01	k: 890645	n:2690000
KS ci ratio: 2.771857e+00	ci left: 9.411825e-09	ci right 2.071241e-06	k: 1	n:2690000
POM121   2690000 perm   3900 sec   (690 perm/sec)   p_kst 3.717472e-07   p_cons 3.310948e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.366251e-06	k: 0	n:2700000
Cons ci ratio: 3.390954e-03	ci left: 3.305213e-01	ci right 3.316443e-01	k: 893923	n:2700000
KS ci ratio: 2.771857e+00	ci left: 9.376966e-09	ci right 2.063570e-06	k: 1	n:2700000
POM121   2700000 perm   3924 sec   (688 perm/sec)   p_kst 3.703704e-07   p_cons 3.310826e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.361209e-06	k: 0	n:2710000
Cons ci ratio: 3.384466e-03	ci left: 3.305519e-01	ci right 3.316729e-01	k: 897314	n:2710000
KS ci ratio: 2.771857e+00	ci left: 9.342365e-09	ci right 2.055955e-06	k: 1	n:2710000
POM121   2710000 perm   3949 sec   (686 perm/sec)   p_kst 3.690037e-07   p_cons 3.311122e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.356205e-06	k: 0	n:2720000
Cons ci ratio: 3.378160e-03	ci left: 3.305631e-01	ci right 3.316821e-01	k: 900653	n:2720000
KS ci ratio: 2.771857e+00	ci left: 9.308018e-09	ci right 2.048397e-06	k: 1	n:2720000
POM121   2720000 perm   3975 sec   (684 perm/sec)   p_kst 3.676471e-07   p_cons 3.311224e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.351237e-06	k: 0	n:2730000
Cons ci ratio: 3.372010e-03	ci left: 3.305586e-01	ci right 3.316755e-01	k: 903949	n:2730000
KS ci ratio: 2.771857e+00	ci left: 9.273922e-09	ci right 2.040893e-06	k: 1	n:2730000
POM121   2730000 perm   4000 sec   (682 perm/sec)   p_kst 3.663004e-07   p_cons 3.311168e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.346305e-06	k: 0	n:2740000
Cons ci ratio: 3.366051e-03	ci left: 3.305333e-01	ci right 3.316481e-01	k: 907188	n:2740000
KS ci ratio: 2.771857e+00	ci left: 9.240076e-09	ci right 2.033445e-06	k: 1	n:2740000
POM121   2740000 perm   4024 sec   (681 perm/sec)   p_kst 3.649635e-07   p_cons 3.310905e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.341410e-06	k: 0	n:2750000
Cons ci ratio: 3.359876e-03	ci left: 3.305409e-01	ci right 3.316537e-01	k: 910517	n:2750000
KS ci ratio: 2.771857e+00	ci left: 9.206476e-09	ci right 2.026050e-06	k: 1	n:2750000
POM121   2750000 perm   4051 sec   (679 perm/sec)   p_kst 3.636364e-07   p_cons 3.310971e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.336550e-06	k: 0	n:2760000
Cons ci ratio: 3.353825e-03	ci left: 3.305365e-01	ci right 3.316472e-01	k: 913813	n:2760000
KS ci ratio: 2.771857e+00	ci left: 9.173119e-09	ci right 2.018710e-06	k: 1	n:2760000
POM121   2760000 perm   4075 sec   (677 perm/sec)   p_kst 3.623188e-07   p_cons 3.310917e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.331725e-06	k: 0	n:2770000
Cons ci ratio: 3.347885e-03	ci left: 3.305216e-01	ci right 3.316304e-01	k: 917080	n:2770000
KS ci ratio: 2.771857e+00	ci left: 9.140003e-09	ci right 2.011422e-06	k: 1	n:2770000
POM121   2770000 perm   4100 sec   (676 perm/sec)   p_kst 3.610108e-07   p_cons 3.310758e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.326934e-06	k: 0	n:2780000
Cons ci ratio: 3.341877e-03	ci left: 3.305202e-01	ci right 3.316269e-01	k: 920384	n:2780000
KS ci ratio: 2.771857e+00	ci left: 9.107125e-09	ci right 2.004187e-06	k: 1	n:2780000
POM121   2780000 perm   4124 sec   (674 perm/sec)   p_kst 3.597122e-07   p_cons 3.310734e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.322178e-06	k: 0	n:2790000
Cons ci ratio: 3.335898e-03	ci left: 3.305191e-01	ci right 3.316239e-01	k: 923689	n:2790000
KS ci ratio: 2.771857e+00	ci left: 9.074483e-09	ci right 1.997003e-06	k: 1	n:2790000
POM121   2790000 perm   4151 sec   (672 perm/sec)   p_kst 3.584229e-07   p_cons 3.310713e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.317456e-06	k: 0	n:2800000
Cons ci ratio: 3.329698e-03	ci left: 3.305516e-01	ci right 3.316544e-01	k: 927088	n:2800000
KS ci ratio: 2.771857e+00	ci left: 9.042074e-09	ci right 1.989871e-06	k: 1	n:2800000
POM121   2800000 perm   4177 sec   (670 perm/sec)   p_kst 3.571429e-07   p_cons 3.311029e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.312768e-06	k: 0	n:2810000
Cons ci ratio: 3.323707e-03	ci left: 3.305608e-01	ci right 3.316616e-01	k: 930422	n:2810000
KS ci ratio: 2.771857e+00	ci left: 9.009896e-09	ci right 1.982790e-06	k: 1	n:2810000
POM121   2810000 perm   4202 sec   (669 perm/sec)   p_kst 3.558719e-07   p_cons 3.311110e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.308112e-06	k: 0	n:2820000
Cons ci ratio: 3.317913e-03	ci left: 3.305479e-01	ci right 3.316468e-01	k: 933694	n:2820000
KS ci ratio: 2.771857e+00	ci left: 8.977946e-09	ci right 1.975758e-06	k: 1	n:2820000
POM121   2820000 perm   4228 sec   (667 perm/sec)   p_kst 3.546099e-07   p_cons 3.310972e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.303490e-06	k: 0	n:2830000
Cons ci ratio: 3.312027e-03	ci left: 3.305513e-01	ci right 3.316483e-01	k: 937012	n:2830000
KS ci ratio: 2.771857e+00	ci left: 8.946222e-09	ci right 1.968777e-06	k: 1	n:2830000
POM121   2830000 perm   4254 sec   (665 perm/sec)   p_kst 3.533569e-07   p_cons 3.310996e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.298900e-06	k: 0	n:2840000
Cons ci ratio: 3.306285e-03	ci left: 3.305396e-01	ci right 3.316346e-01	k: 940287	n:2840000
KS ci ratio: 2.771857e+00	ci left: 8.914721e-09	ci right 1.961845e-06	k: 1	n:2840000
POM121   2840000 perm   4280 sec   (664 perm/sec)   p_kst 3.521127e-07   p_cons 3.310870e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.294343e-06	k: 0	n:2850000
Cons ci ratio: 3.300419e-03	ci left: 3.305487e-01	ci right 3.316418e-01	k: 943621	n:2850000
KS ci ratio: 2.771857e+00	ci left: 8.883441e-09	ci right 1.954961e-06	k: 1	n:2850000
POM121   2850000 perm   4304 sec   (662 perm/sec)   p_kst 3.508772e-07   p_cons 3.310951e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.289817e-06	k: 0	n:2860000
Cons ci ratio: 3.294644e-03	ci left: 3.305497e-01	ci right 3.316409e-01	k: 946932	n:2860000
KS ci ratio: 2.771857e+00	ci left: 8.852380e-09	ci right 1.948126e-06	k: 1	n:2860000
POM121   2860000 perm   4329 sec   (661 perm/sec)   p_kst 3.496503e-07   p_cons 3.310951e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.285323e-06	k: 0	n:2870000
Cons ci ratio: 3.288930e-03	ci left: 3.305465e-01	ci right 3.316357e-01	k: 950231	n:2870000
KS ci ratio: 2.771857e+00	ci left: 8.821536e-09	ci right 1.941338e-06	k: 1	n:2870000
POM121   2870000 perm   4353 sec   (659 perm/sec)   p_kst 3.484321e-07   p_cons 3.310909e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.280860e-06	k: 0	n:2880000
Cons ci ratio: 3.283156e-03	ci left: 3.305554e-01	ci right 3.316428e-01	k: 953565	n:2880000
KS ci ratio: 2.771857e+00	ci left: 8.790905e-09	ci right 1.934597e-06	k: 1	n:2880000
POM121   2880000 perm   4381 sec   (657 perm/sec)   p_kst 3.472222e-07   p_cons 3.310990e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.276428e-06	k: 0	n:2890000
Cons ci ratio: 3.277187e-03	ci left: 3.305948e-01	ci right 3.316803e-01	k: 956987	n:2890000
KS ci ratio: 2.771857e+00	ci left: 8.760487e-09	ci right 1.927903e-06	k: 1	n:2890000
POM121   2890000 perm   4405 sec   (656 perm/sec)   p_kst 3.460208e-07   p_cons 3.311374e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.272027e-06	k: 0	n:2900000
Cons ci ratio: 3.271568e-03	ci left: 3.305908e-01	ci right 3.316744e-01	k: 960284	n:2900000
KS ci ratio: 2.771857e+00	ci left: 8.730279e-09	ci right 1.921255e-06	k: 1	n:2900000
POM121   2900000 perm   4431 sec   (655 perm/sec)   p_kst 3.448276e-07   p_cons 3.311324e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.267655e-06	k: 0	n:2910000
Cons ci ratio: 3.265961e-03	ci left: 3.305892e-01	ci right 3.316710e-01	k: 963588	n:2910000
KS ci ratio: 2.771857e+00	ci left: 8.700278e-09	ci right 1.914653e-06	k: 1	n:2910000
POM121   2910000 perm   4457 sec   (653 perm/sec)   p_kst 3.436426e-07   p_cons 3.311299e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.263314e-06	k: 0	n:2920000
Cons ci ratio: 3.260205e-03	ci left: 3.306116e-01	ci right 3.316915e-01	k: 966962	n:2920000
KS ci ratio: 2.771857e+00	ci left: 8.670482e-09	ci right 1.908096e-06	k: 1	n:2920000
POM121   2920000 perm   4483 sec   (651 perm/sec)   p_kst 3.424658e-07   p_cons 3.311514e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.259002e-06	k: 0	n:2930000
Cons ci ratio: 3.254648e-03	ci left: 3.306109e-01	ci right 3.316890e-01	k: 970269	n:2930000
KS ci ratio: 2.771857e+00	ci left: 8.640890e-09	ci right 1.901583e-06	k: 1	n:2930000
POM121   2930000 perm   4508 sec   (650 perm/sec)   p_kst 3.412969e-07   p_cons 3.311498e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.254720e-06	k: 0	n:2940000
Cons ci ratio: 3.249337e-03	ci left: 3.305808e-01	ci right 3.316570e-01	k: 973489	n:2940000
KS ci ratio: 2.771857e+00	ci left: 8.611499e-09	ci right 1.895115e-06	k: 1	n:2940000
POM121   2940000 perm   4536 sec   (648 perm/sec)   p_kst 3.401361e-07   p_cons 3.311187e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.250467e-06	k: 0	n:2950000
Cons ci ratio: 3.243927e-03	ci left: 3.305677e-01	ci right 3.316421e-01	k: 976759	n:2950000
KS ci ratio: 2.771857e+00	ci left: 8.582308e-09	ci right 1.888691e-06	k: 1	n:2950000
POM121   2950000 perm   4561 sec   (647 perm/sec)   p_kst 3.389831e-07   p_cons 3.311047e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.246242e-06	k: 0	n:2960000
Cons ci ratio: 3.238413e-03	ci left: 3.305727e-01	ci right 3.316452e-01	k: 980082	n:2960000
KS ci ratio: 2.771857e+00	ci left: 8.553313e-09	ci right 1.882311e-06	k: 1	n:2960000
POM121   2960000 perm   4587 sec   (645 perm/sec)   p_kst 3.378378e-07   p_cons 3.311088e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.242046e-06	k: 0	n:2970000
Cons ci ratio: 3.232866e-03	ci left: 3.305860e-01	ci right 3.316568e-01	k: 983430	n:2970000
KS ci ratio: 2.771857e+00	ci left: 8.524514e-09	ci right 1.875973e-06	k: 1	n:2970000
POM121   2970000 perm   4613 sec   (644 perm/sec)   p_kst 3.367003e-07   p_cons 3.311212e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.237878e-06	k: 0	n:2980000
Cons ci ratio: 3.227482e-03	ci left: 3.305808e-01	ci right 3.316498e-01	k: 986723	n:2980000
KS ci ratio: 2.771857e+00	ci left: 8.495909e-09	ci right 1.869678e-06	k: 1	n:2980000
POM121   2980000 perm   4638 sec   (643 perm/sec)   p_kst 3.355705e-07   p_cons 3.311151e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.233738e-06	k: 0	n:2990000
Cons ci ratio: 3.222127e-03	ci left: 3.305753e-01	ci right 3.316425e-01	k: 990015	n:2990000
KS ci ratio: 2.771857e+00	ci left: 8.467494e-09	ci right 1.863424e-06	k: 1	n:2990000
POM121   2990000 perm   4663 sec   (641 perm/sec)   p_kst 3.344482e-07   p_cons 3.311087e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.229626e-06	k: 0	n:3000000
Cons ci ratio: 3.216842e-03	ci left: 3.305638e-01	ci right 3.316292e-01	k: 993289	n:3000000
KS ci ratio: 2.771857e+00	ci left: 8.439269e-09	ci right 1.857213e-06	k: 1	n:3000000
POM121   3000000 perm   4690 sec   (640 perm/sec)   p_kst 3.333333e-07   p_cons 3.310963e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.225541e-06	k: 0	n:3010000
Cons ci ratio: 3.211737e-03	ci left: 3.305312e-01	ci right 3.315948e-01	k: 996499	n:3010000
KS ci ratio: 2.771857e+00	ci left: 8.411232e-09	ci right 1.851043e-06	k: 1	n:3010000
POM121   3010000 perm   4720 sec   (638 perm/sec)   p_kst 3.322259e-07   p_cons 3.310628e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.221483e-06	k: 0	n:3020000
Cons ci ratio: 3.206664e-03	ci left: 3.304977e-01	ci right 3.315595e-01	k: 999706	n:3020000
KS ci ratio: 2.771857e+00	ci left: 8.383380e-09	ci right 1.844914e-06	k: 1	n:3020000
POM121   3020000 perm   4747 sec   (636 perm/sec)   p_kst 3.311258e-07   p_cons 3.310285e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.217451e-06	k: 0	n:3030000
Cons ci ratio: 3.201297e-03	ci left: 3.305084e-01	ci right 3.315685e-01	k: 1003046	n:3030000
KS ci ratio: 2.771857e+00	ci left: 8.355712e-09	ci right 1.838825e-06	k: 1	n:3030000
POM121   3030000 perm   4774 sec   (635 perm/sec)   p_kst 3.300330e-07   p_cons 3.310383e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.213446e-06	k: 0	n:3040000
Cons ci ratio: 3.196128e-03	ci left: 3.304954e-01	ci right 3.315537e-01	k: 1006314	n:3040000
KS ci ratio: 2.771857e+00	ci left: 8.328226e-09	ci right 1.832776e-06	k: 1	n:3040000
POM121   3040000 perm   4800 sec   (633 perm/sec)   p_kst 3.289474e-07   p_cons 3.310243e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.209468e-06	k: 0	n:3050000
Cons ci ratio: 3.190944e-03	ci left: 3.304879e-01	ci right 3.315445e-01	k: 1009599	n:3050000
KS ci ratio: 2.771857e+00	ci left: 8.300921e-09	ci right 1.826767e-06	k: 1	n:3050000
POM121   3050000 perm   4826 sec   (632 perm/sec)   p_kst 3.278689e-07   p_cons 3.310161e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.205515e-06	k: 0	n:3060000
Cons ci ratio: 3.185665e-03	ci left: 3.304972e-01	ci right 3.315521e-01	k: 1012935	n:3060000
KS ci ratio: 2.771857e+00	ci left: 8.273793e-09	ci right 1.820797e-06	k: 1	n:3060000
POM121   3060000 perm   4855 sec   (630 perm/sec)   p_kst 3.267974e-07   p_cons 3.310245e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.201589e-06	k: 0	n:3070000
Cons ci ratio: 3.180655e-03	ci left: 3.304726e-01	ci right 3.315257e-01	k: 1016167	n:3070000
KS ci ratio: 2.771857e+00	ci left: 8.246843e-09	ci right 1.814866e-06	k: 1	n:3070000
POM121   3070000 perm   4880 sec   (629 perm/sec)   p_kst 3.257329e-07   p_cons 3.309990e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.197687e-06	k: 0	n:3080000
Cons ci ratio: 3.175432e-03	ci left: 3.304813e-01	ci right 3.315327e-01	k: 1019501	n:3080000
KS ci ratio: 2.771857e+00	ci left: 8.220068e-09	ci right 1.808974e-06	k: 1	n:3080000
POM121   3080000 perm   4906 sec   (628 perm/sec)   p_kst 3.246753e-07   p_cons 3.310068e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.193811e-06	k: 0	n:3090000
Cons ci ratio: 3.170282e-03	ci left: 3.304831e-01	ci right 3.315328e-01	k: 1022814	n:3090000
KS ci ratio: 2.771857e+00	ci left: 8.193465e-09	ci right 1.803120e-06	k: 1	n:3090000
POM121   3090000 perm   4932 sec   (626 perm/sec)   p_kst 3.236246e-07   p_cons 3.310078e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.189960e-06	k: 0	n:3100000
Cons ci ratio: 3.165197e-03	ci left: 3.304794e-01	ci right 3.315274e-01	k: 1026110	n:3100000
KS ci ratio: 2.771857e+00	ci left: 8.167035e-09	ci right 1.797303e-06	k: 1	n:3100000
POM121   3100000 perm   4959 sec   (625 perm/sec)   p_kst 3.225806e-07   p_cons 3.310032e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.186134e-06	k: 0	n:3110000
Cons ci ratio: 3.160116e-03	ci left: 3.304786e-01	ci right 3.315249e-01	k: 1029415	n:3110000
KS ci ratio: 2.263212e+00	ci left: 7.788081e-08	ci right 2.323049e-06	k: 2	n:3110000
POM121   3110000 perm   4986 sec   (624 perm/sec)   p_kst 6.430868e-07   p_cons 3.310016e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.182332e-06	k: 0	n:3120000
Cons ci ratio: 3.155228e-03	ci left: 3.304541e-01	ci right 3.314987e-01	k: 1032646	n:3120000
KS ci ratio: 2.263212e+00	ci left: 7.763119e-08	ci right 2.315603e-06	k: 2	n:3120000
POM121   3120000 perm   5015 sec   (622 perm/sec)   p_kst 6.410256e-07   p_cons 3.309763e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.178555e-06	k: 0	n:3130000
Cons ci ratio: 3.150247e-03	ci left: 3.304461e-01	ci right 3.314890e-01	k: 1035928	n:3130000
KS ci ratio: 2.263212e+00	ci left: 7.738317e-08	ci right 2.308205e-06	k: 2	n:3130000
POM121   3130000 perm   5042 sec   (621 perm/sec)   p_kst 6.389776e-07   p_cons 3.309674e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.174802e-06	k: 0	n:3140000
Cons ci ratio: 3.145463e-03	ci left: 3.304136e-01	ci right 3.314549e-01	k: 1039133	n:3140000
KS ci ratio: 2.263212e+00	ci left: 7.713672e-08	ci right 2.300854e-06	k: 2	n:3140000
POM121   3140000 perm   5068 sec   (620 perm/sec)   p_kst 6.369427e-07   p_cons 3.309341e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.171072e-06	k: 0	n:3150000
Cons ci ratio: 3.140528e-03	ci left: 3.304058e-01	ci right 3.314453e-01	k: 1042415	n:3150000
KS ci ratio: 2.263212e+00	ci left: 7.689184e-08	ci right 2.293550e-06	k: 2	n:3150000
POM121   3150000 perm   5095 sec   (618 perm/sec)   p_kst 6.349206e-07   p_cons 3.309254e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.167366e-06	k: 0	n:3160000
Cons ci ratio: 3.135607e-03	ci left: 3.303992e-01	ci right 3.314372e-01	k: 1045701	n:3160000
KS ci ratio: 2.263212e+00	ci left: 7.664851e-08	ci right 2.286292e-06	k: 2	n:3160000
POM121   3160000 perm   5122 sec   (617 perm/sec)   p_kst 6.329114e-07   p_cons 3.309180e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.163684e-06	k: 0	n:3170000
Cons ci ratio: 3.130691e-03	ci left: 3.303953e-01	ci right 3.314315e-01	k: 1048995	n:3170000
KS ci ratio: 2.263212e+00	ci left: 7.640672e-08	ci right 2.279079e-06	k: 2	n:3170000
POM121   3170000 perm   5149 sec   (616 perm/sec)   p_kst 6.309148e-07   p_cons 3.309132e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.160024e-06	k: 0	n:3180000
Cons ci ratio: 3.125570e-03	ci left: 3.304237e-01	ci right 3.314584e-01	k: 1052392	n:3180000
KS ci ratio: 2.263212e+00	ci left: 7.616645e-08	ci right 2.271912e-06	k: 2	n:3180000
POM121   3180000 perm   5175 sec   (614 perm/sec)   p_kst 6.289308e-07   p_cons 3.309409e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.156388e-06	k: 0	n:3190000
Cons ci ratio: 3.120624e-03	ci left: 3.304306e-01	ci right 3.314637e-01	k: 1055721	n:3190000
KS ci ratio: 2.263212e+00	ci left: 7.592768e-08	ci right 2.264791e-06	k: 2	n:3190000
POM121   3190000 perm   5202 sec   (613 perm/sec)   p_kst 6.269592e-07   p_cons 3.309470e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.152774e-06	k: 0	n:3200000
Cons ci ratio: 3.115741e-03	ci left: 3.304319e-01	ci right 3.314634e-01	k: 1059032	n:3200000
KS ci ratio: 2.263212e+00	ci left: 7.569041e-08	ci right 2.257713e-06	k: 2	n:3200000
POM121   3200000 perm   5229 sec   (612 perm/sec)   p_kst 6.250000e-07   p_cons 3.309475e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.149183e-06	k: 0	n:3210000
Cons ci ratio: 3.111031e-03	ci left: 3.304117e-01	ci right 3.314415e-01	k: 1062274	n:3210000
KS ci ratio: 2.263212e+00	ci left: 7.545461e-08	ci right 2.250680e-06	k: 2	n:3210000
POM121   3210000 perm   5256 sec   (611 perm/sec)   p_kst 6.230530e-07   p_cons 3.309265e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.145614e-06	k: 0	n:3220000
Cons ci ratio: 3.106139e-03	ci left: 3.304208e-01	ci right 3.314490e-01	k: 1065610	n:3220000
KS ci ratio: 2.263212e+00	ci left: 7.522028e-08	ci right 2.243690e-06	k: 2	n:3220000
POM121   3220000 perm   5284 sec   (609 perm/sec)   p_kst 6.211180e-07   p_cons 3.309348e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.142067e-06	k: 0	n:3230000
Cons ci ratio: 3.101217e-03	ci left: 3.304373e-01	ci right 3.314639e-01	k: 1068970	n:3230000
KS ci ratio: 2.263212e+00	ci left: 7.498740e-08	ci right 2.236744e-06	k: 2	n:3230000
POM121   3230000 perm   5312 sec   (608 perm/sec)   p_kst 6.191950e-07   p_cons 3.309505e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.138542e-06	k: 0	n:3240000
Cons ci ratio: 3.096394e-03	ci left: 3.304429e-01	ci right 3.314679e-01	k: 1072295	n:3240000
KS ci ratio: 2.263212e+00	ci left: 7.475596e-08	ci right 2.229840e-06	k: 2	n:3240000
POM121   3240000 perm   5340 sec   (607 perm/sec)   p_kst 6.172840e-07   p_cons 3.309552e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.135039e-06	k: 0	n:3250000
Cons ci ratio: 3.091525e-03	ci left: 3.304583e-01	ci right 3.314817e-01	k: 1075652	n:3250000
KS ci ratio: 2.263212e+00	ci left: 7.452594e-08	ci right 2.222979e-06	k: 2	n:3250000
POM121   3250000 perm   5368 sec   (605 perm/sec)   p_kst 6.153846e-07   p_cons 3.309698e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.131557e-06	k: 0	n:3260000
Cons ci ratio: 3.086755e-03	ci left: 3.304625e-01	ci right 3.314844e-01	k: 1078973	n:3260000
KS ci ratio: 2.263212e+00	ci left: 7.429733e-08	ci right 2.216160e-06	k: 2	n:3260000
POM121   3260000 perm   5396 sec   (604 perm/sec)   p_kst 6.134969e-07   p_cons 3.309733e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.128097e-06	k: 0	n:3270000
Cons ci ratio: 3.082236e-03	ci left: 3.304340e-01	ci right 3.314544e-01	k: 1082187	n:3270000
KS ci ratio: 2.263212e+00	ci left: 7.407012e-08	ci right 2.209383e-06	k: 2	n:3270000
POM121   3270000 perm   5424 sec   (603 perm/sec)   p_kst 6.116208e-07   p_cons 3.309440e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.124658e-06	k: 0	n:3280000
Cons ci ratio: 3.077600e-03	ci left: 3.304252e-01	ci right 3.314440e-01	k: 1085465	n:3280000
KS ci ratio: 2.263212e+00	ci left: 7.384430e-08	ci right 2.202647e-06	k: 2	n:3280000
POM121   3280000 perm   5451 sec   (602 perm/sec)   p_kst 6.097561e-07   p_cons 3.309345e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.121239e-06	k: 0	n:3290000
Cons ci ratio: 3.072966e-03	ci left: 3.304192e-01	ci right 3.314364e-01	k: 1088752	n:3290000
KS ci ratio: 2.263212e+00	ci left: 7.361985e-08	ci right 2.195952e-06	k: 2	n:3290000
POM121   3290000 perm   5480 sec   (600 perm/sec)   p_kst 6.079027e-07   p_cons 3.309277e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.117842e-06	k: 0	n:3300000
Cons ci ratio: 3.068400e-03	ci left: 3.304066e-01	ci right 3.314222e-01	k: 1092017	n:3300000
KS ci ratio: 2.263212e+00	ci left: 7.339676e-08	ci right 2.189298e-06	k: 2	n:3300000
POM121   3300000 perm   5508 sec   (599 perm/sec)   p_kst 6.060606e-07   p_cons 3.309142e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.114464e-06	k: 0	n:3310000
Cons ci ratio: 3.063837e-03	ci left: 3.303964e-01	ci right 3.314105e-01	k: 1095290	n:3310000
KS ci ratio: 2.263212e+00	ci left: 7.317502e-08	ci right 2.182683e-06	k: 2	n:3310000
POM121   3310000 perm   5535 sec   (598 perm/sec)   p_kst 6.042296e-07   p_cons 3.309033e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.111108e-06	k: 0	n:3320000
Cons ci ratio: 3.059357e-03	ci left: 3.303773e-01	ci right 3.313899e-01	k: 1098533	n:3320000
KS ci ratio: 2.263212e+00	ci left: 7.295461e-08	ci right 2.176109e-06	k: 2	n:3320000
POM121   3320000 perm   5562 sec   (597 perm/sec)   p_kst 6.024096e-07   p_cons 3.308834e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.107771e-06	k: 0	n:3330000
Cons ci ratio: 3.054826e-03	ci left: 3.303685e-01	ci right 3.313795e-01	k: 1101810	n:3330000
KS ci ratio: 2.263212e+00	ci left: 7.273553e-08	ci right 2.169574e-06	k: 2	n:3330000
POM121   3330000 perm   5590 sec   (596 perm/sec)   p_kst 6.006006e-07   p_cons 3.308739e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.104454e-06	k: 0	n:3340000
Cons ci ratio: 3.050207e-03	ci left: 3.303753e-01	ci right 3.313849e-01	k: 1105139	n:3340000
KS ci ratio: 2.263212e+00	ci left: 7.251776e-08	ci right 2.163078e-06	k: 2	n:3340000
POM121   3340000 perm   5618 sec   (595 perm/sec)   p_kst 5.988024e-07   p_cons 3.308799e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.101157e-06	k: 0	n:3350000
Cons ci ratio: 3.045667e-03	ci left: 3.303737e-01	ci right 3.313818e-01	k: 1108440	n:3350000
KS ci ratio: 2.263212e+00	ci left: 7.230129e-08	ci right 2.156622e-06	k: 2	n:3350000
POM121   3350000 perm   5645 sec   (593 perm/sec)   p_kst 5.970149e-07   p_cons 3.308776e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.097880e-06	k: 0	n:3360000
Cons ci ratio: 3.041141e-03	ci left: 3.303731e-01	ci right 3.313796e-01	k: 1111744	n:3360000
KS ci ratio: 2.263212e+00	ci left: 7.208610e-08	ci right 2.150203e-06	k: 2	n:3360000
POM121   3360000 perm   5674 sec   (592 perm/sec)   p_kst 5.952381e-07   p_cons 3.308762e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.094622e-06	k: 0	n:3370000
Cons ci ratio: 3.036607e-03	ci left: 3.303766e-01	ci right 3.313816e-01	k: 1115062	n:3370000
KS ci ratio: 2.263212e+00	ci left: 7.187220e-08	ci right 2.143823e-06	k: 2	n:3370000
POM121   3370000 perm   5703 sec   (591 perm/sec)   p_kst 5.934718e-07   p_cons 3.308789e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.091384e-06	k: 0	n:3380000
Cons ci ratio: 3.032128e-03	ci left: 3.303750e-01	ci right 3.313785e-01	k: 1118363	n:3380000
KS ci ratio: 2.263212e+00	ci left: 7.165956e-08	ci right 2.137480e-06	k: 2	n:3380000
POM121   3380000 perm   5732 sec   (590 perm/sec)   p_kst 5.917160e-07   p_cons 3.308766e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.088164e-06	k: 0	n:3390000
Cons ci ratio: 3.027712e-03	ci left: 3.303670e-01	ci right 3.313690e-01	k: 1121642	n:3390000
KS ci ratio: 2.263212e+00	ci left: 7.144817e-08	ci right 2.131175e-06	k: 2	n:3390000
POM121   3390000 perm   5760 sec   (589 perm/sec)   p_kst 5.899705e-07   p_cons 3.308678e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.084964e-06	k: 0	n:3400000
Cons ci ratio: 3.023188e-03	ci left: 3.303778e-01	ci right 3.313784e-01	k: 1124985	n:3400000
KS ci ratio: 2.263212e+00	ci left: 7.123803e-08	ci right 2.124907e-06	k: 2	n:3400000
POM121   3400000 perm   5788 sec   (587 perm/sec)   p_kst 5.882353e-07   p_cons 3.308779e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.081782e-06	k: 0	n:3410000
Cons ci ratio: 3.018665e-03	ci left: 3.303912e-01	ci right 3.313903e-01	k: 1128337	n:3410000
KS ci ratio: 2.263212e+00	ci left: 7.102912e-08	ci right 2.118675e-06	k: 2	n:3410000
POM121   3410000 perm   5816 sec   (586 perm/sec)   p_kst 5.865103e-07   p_cons 3.308906e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.078619e-06	k: 0	n:3420000
Cons ci ratio: 3.014366e-03	ci left: 3.303747e-01	ci right 3.313724e-01	k: 1131587	n:3420000
KS ci ratio: 2.263212e+00	ci left: 7.082143e-08	ci right 2.112480e-06	k: 2	n:3420000
POM121   3420000 perm   5845 sec   (585 perm/sec)   p_kst 5.847953e-07   p_cons 3.308734e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.075474e-06	k: 0	n:3430000
Cons ci ratio: 3.009807e-03	ci left: 3.303991e-01	ci right 3.313953e-01	k: 1134977	n:3430000
KS ci ratio: 2.263212e+00	ci left: 7.061496e-08	ci right 2.106321e-06	k: 2	n:3430000
POM121   3430000 perm   5874 sec   (584 perm/sec)   p_kst 5.830904e-07   p_cons 3.308971e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.072348e-06	k: 0	n:3440000
Cons ci ratio: 3.005514e-03	ci left: 3.303874e-01	ci right 3.313821e-01	k: 1138243	n:3440000
KS ci ratio: 2.263212e+00	ci left: 7.040968e-08	ci right 2.100198e-06	k: 2	n:3440000
POM121   3440000 perm   5903 sec   (583 perm/sec)   p_kst 5.813953e-07   p_cons 3.308846e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.069240e-06	k: 0	n:3450000
Cons ci ratio: 3.001061e-03	ci left: 3.304020e-01	ci right 3.313954e-01	k: 1141600	n:3450000
KS ci ratio: 2.263212e+00	ci left: 7.020560e-08	ci right 2.094111e-06	k: 2	n:3450000
POM121   3450000 perm   5934 sec   (581 perm/sec)   p_kst 5.797101e-07   p_cons 3.308986e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.066150e-06	k: 0	n:3460000
Cons ci ratio: 2.996922e-03	ci left: 3.303730e-01	ci right 3.313649e-01	k: 1144806	n:3460000
KS ci ratio: 2.263212e+00	ci left: 7.000269e-08	ci right 2.088058e-06	k: 2	n:3460000
POM121   3460000 perm   5962 sec   (580 perm/sec)   p_kst 5.780347e-07   p_cons 3.308688e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.063077e-06	k: 0	n:3470000
Cons ci ratio: 2.992606e-03	ci left: 3.303729e-01	ci right 3.313634e-01	k: 1148112	n:3470000
KS ci ratio: 2.263212e+00	ci left: 6.980095e-08	ci right 2.082041e-06	k: 2	n:3470000
POM121   3470000 perm   5992 sec   (579 perm/sec)   p_kst 5.763689e-07   p_cons 3.308680e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.060022e-06	k: 0	n:3480000
Cons ci ratio: 2.988353e-03	ci left: 3.303663e-01	ci right 3.313553e-01	k: 1151395	n:3480000
KS ci ratio: 2.263212e+00	ci left: 6.960038e-08	ci right 2.076058e-06	k: 2	n:3480000
POM121   3480000 perm   6020 sec   (578 perm/sec)   p_kst 5.747126e-07   p_cons 3.308606e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.056985e-06	k: 0	n:3490000
Cons ci ratio: 2.983983e-03	ci left: 3.303797e-01	ci right 3.313673e-01	k: 1154748	n:3490000
KS ci ratio: 2.263212e+00	ci left: 6.940095e-08	ci right 2.070110e-06	k: 2	n:3490000
POM121   3490000 perm   6048 sec   (577 perm/sec)   p_kst 5.730659e-07   p_cons 3.308734e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.053965e-06	k: 0	n:3500000
Cons ci ratio: 2.979876e-03	ci left: 3.303568e-01	ci right 3.313429e-01	k: 1157974	n:3500000
KS ci ratio: 2.263212e+00	ci left: 6.920266e-08	ci right 2.064195e-06	k: 2	n:3500000
POM121   3500000 perm   6077 sec   (576 perm/sec)   p_kst 5.714286e-07   p_cons 3.308497e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.050962e-06	k: 0	n:3510000
Cons ci ratio: 2.975467e-03	ci left: 3.303815e-01	ci right 3.313663e-01	k: 1161367	n:3510000
KS ci ratio: 2.263212e+00	ci left: 6.900550e-08	ci right 2.058314e-06	k: 2	n:3510000
POM121   3510000 perm   6105 sec   (575 perm/sec)   p_kst 5.698006e-07   p_cons 3.308738e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.047977e-06	k: 0	n:3520000
Cons ci ratio: 2.971305e-03	ci left: 3.303721e-01	ci right 3.313555e-01	k: 1164640	n:3520000
KS ci ratio: 2.263212e+00	ci left: 6.880946e-08	ci right 2.052467e-06	k: 2	n:3520000
POM121   3520000 perm   6133 sec   (574 perm/sec)   p_kst 5.681818e-07   p_cons 3.308636e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.045008e-06	k: 0	n:3530000
Cons ci ratio: 2.967080e-03	ci left: 3.303749e-01	ci right 3.313568e-01	k: 1167956	n:3530000
KS ci ratio: 2.263212e+00	ci left: 6.861453e-08	ci right 2.046652e-06	k: 2	n:3530000
POM121   3530000 perm   6161 sec   (573 perm/sec)   p_kst 5.665722e-07   p_cons 3.308657e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.042056e-06	k: 0	n:3540000
Cons ci ratio: 2.962806e-03	ci left: 3.303875e-01	ci right 3.313681e-01	k: 1171307	n:3540000
KS ci ratio: 2.263212e+00	ci left: 6.842071e-08	ci right 2.040871e-06	k: 2	n:3540000
POM121   3540000 perm   6190 sec   (572 perm/sec)   p_kst 5.649718e-07   p_cons 3.308777e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.039120e-06	k: 0	n:3550000
Cons ci ratio: 2.958530e-03	ci left: 3.304032e-01	ci right 3.313824e-01	k: 1174669	n:3550000
KS ci ratio: 2.263212e+00	ci left: 6.822797e-08	ci right 2.035122e-06	k: 2	n:3550000
POM121   3550000 perm   6218 sec   (571 perm/sec)   p_kst 5.633803e-07   p_cons 3.308927e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.036202e-06	k: 0	n:3560000
Cons ci ratio: 2.954418e-03	ci left: 3.303969e-01	ci right 3.313747e-01	k: 1177953	n:3560000
KS ci ratio: 2.263212e+00	ci left: 6.803632e-08	ci right 2.029405e-06	k: 2	n:3560000
POM121   3560000 perm   6247 sec   (570 perm/sec)   p_kst 5.617978e-07   p_cons 3.308857e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.033299e-06	k: 0	n:3570000
Cons ci ratio: 2.950301e-03	ci left: 3.303940e-01	ci right 3.313704e-01	k: 1181249	n:3570000
KS ci ratio: 2.263212e+00	ci left: 6.784574e-08	ci right 2.023721e-06	k: 2	n:3570000
POM121   3570000 perm   6277 sec   (569 perm/sec)   p_kst 5.602241e-07   p_cons 3.308821e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.030413e-06	k: 0	n:3580000
Cons ci ratio: 2.946059e-03	ci left: 3.304126e-01	ci right 3.313877e-01	k: 1184622	n:3580000
KS ci ratio: 2.263212e+00	ci left: 6.765623e-08	ci right 2.018068e-06	k: 2	n:3580000
POM121   3580000 perm   6305 sec   (568 perm/sec)   p_kst 5.586592e-07   p_cons 3.309000e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.027542e-06	k: 0	n:3590000
Cons ci ratio: 2.941955e-03	ci left: 3.304130e-01	ci right 3.313867e-01	k: 1187930	n:3590000
KS ci ratio: 2.263212e+00	ci left: 6.746777e-08	ci right 2.012446e-06	k: 2	n:3590000
POM121   3590000 perm   6334 sec   (567 perm/sec)   p_kst 5.571031e-07   p_cons 3.308997e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.024688e-06	k: 0	n:3600000
Cons ci ratio: 2.938072e-03	ci left: 3.303826e-01	ci right 3.313549e-01	k: 1191127	n:3600000
KS ci ratio: 2.263212e+00	ci left: 6.728036e-08	ci right 2.006856e-06	k: 2	n:3600000
POM121   3600000 perm   6363 sec   (566 perm/sec)   p_kst 5.555556e-07   p_cons 3.308686e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.021850e-06	k: 0	n:3610000
Cons ci ratio: 2.933904e-03	ci left: 3.303977e-01	ci right 3.313688e-01	k: 1194488	n:3610000
KS ci ratio: 2.263212e+00	ci left: 6.709399e-08	ci right 2.001297e-06	k: 2	n:3610000
POM121   3610000 perm   6392 sec   (565 perm/sec)   p_kst 5.540166e-07   p_cons 3.308831e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.019027e-06	k: 0	n:3620000
Cons ci ratio: 2.929916e-03	ci left: 3.303882e-01	ci right 3.313579e-01	k: 1197760	n:3620000
KS ci ratio: 2.263212e+00	ci left: 6.690865e-08	ci right 1.995769e-06	k: 2	n:3620000
POM121   3620000 perm   6422 sec   (564 perm/sec)   p_kst 5.524862e-07   p_cons 3.308729e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.016220e-06	k: 0	n:3630000
Cons ci ratio: 2.925883e-03	ci left: 3.303881e-01	ci right 3.313565e-01	k: 1201066	n:3630000
KS ci ratio: 2.263212e+00	ci left: 6.672433e-08	ci right 1.990271e-06	k: 2	n:3630000
POM121   3630000 perm   6451 sec   (563 perm/sec)   p_kst 5.509642e-07   p_cons 3.308722e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.013428e-06	k: 0	n:3640000
Cons ci ratio: 2.921648e-03	ci left: 3.304210e-01	ci right 3.313881e-01	k: 1204492	n:3640000
KS ci ratio: 2.263212e+00	ci left: 6.654102e-08	ci right 1.984803e-06	k: 2	n:3640000
POM121   3640000 perm   6480 sec   (562 perm/sec)   p_kst 5.494505e-07   p_cons 3.309044e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.010651e-06	k: 0	n:3650000
Cons ci ratio: 2.917578e-03	ci left: 3.304315e-01	ci right 3.313972e-01	k: 1207837	n:3650000
KS ci ratio: 2.263212e+00	ci left: 6.635871e-08	ci right 1.979365e-06	k: 2	n:3650000
POM121   3650000 perm   6510 sec   (561 perm/sec)   p_kst 5.479452e-07   p_cons 3.309142e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.007890e-06	k: 0	n:3660000
Cons ci ratio: 2.913547e-03	ci left: 3.304387e-01	ci right 3.314031e-01	k: 1211170	n:3660000
KS ci ratio: 2.263212e+00	ci left: 6.617741e-08	ci right 1.973957e-06	k: 2	n:3660000
POM121   3660000 perm   6540 sec   (560 perm/sec)   p_kst 5.464481e-07   p_cons 3.309208e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.005144e-06	k: 0	n:3670000
Cons ci ratio: 2.909511e-03	ci left: 3.304491e-01	ci right 3.314122e-01	k: 1214515	n:3670000
KS ci ratio: 2.263212e+00	ci left: 6.599709e-08	ci right 1.968578e-06	k: 2	n:3670000
POM121   3670000 perm   6569 sec   (559 perm/sec)   p_kst 5.449591e-07   p_cons 3.309305e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.002412e-06	k: 0	n:3680000
Cons ci ratio: 2.905648e-03	ci left: 3.304355e-01	ci right 3.313973e-01	k: 1217772	n:3680000
KS ci ratio: 2.263212e+00	ci left: 6.581775e-08	ci right 1.963229e-06	k: 2	n:3680000
POM121   3680000 perm   6598 sec   (558 perm/sec)   p_kst 5.434783e-07   p_cons 3.309163e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.996958e-07	k: 0	n:3690000
Cons ci ratio: 2.901787e-03	ci left: 3.304242e-01	ci right 3.313847e-01	k: 1221037	n:3690000
KS ci ratio: 2.263212e+00	ci left: 6.563938e-08	ci right 1.957909e-06	k: 2	n:3690000
POM121   3690000 perm   6628 sec   (557 perm/sec)   p_kst 5.420054e-07   p_cons 3.309043e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.969940e-07	k: 0	n:3700000
Cons ci ratio: 2.897983e-03	ci left: 3.304065e-01	ci right 3.313657e-01	k: 1224278	n:3700000
KS ci ratio: 2.263212e+00	ci left: 6.546197e-08	ci right 1.952617e-06	k: 2	n:3700000
POM121   3700000 perm   6657 sec   (556 perm/sec)   p_kst 5.405405e-07   p_cons 3.308859e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.943066e-07	k: 0	n:3710000
Cons ci ratio: 2.894127e-03	ci left: 3.303991e-01	ci right 3.313570e-01	k: 1227557	n:3710000
KS ci ratio: 2.263212e+00	ci left: 6.528553e-08	ci right 1.947354e-06	k: 2	n:3710000
POM121   3710000 perm   6687 sec   (555 perm/sec)   p_kst 5.390836e-07   p_cons 3.308779e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.916338e-07	k: 0	n:3720000
Cons ci ratio: 2.890266e-03	ci left: 3.303950e-01	ci right 3.313515e-01	k: 1230848	n:3720000
KS ci ratio: 2.263212e+00	ci left: 6.511003e-08	ci right 1.942119e-06	k: 2	n:3720000
POM121   3720000 perm   6717 sec   (554 perm/sec)   p_kst 5.376344e-07   p_cons 3.308731e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.889752e-07	k: 0	n:3730000
Cons ci ratio: 2.886376e-03	ci left: 3.303976e-01	ci right 3.313528e-01	k: 1234164	n:3730000
KS ci ratio: 2.263212e+00	ci left: 6.493547e-08	ci right 1.936912e-06	k: 2	n:3730000
POM121   3730000 perm   6747 sec   (553 perm/sec)   p_kst 5.361930e-07   p_cons 3.308751e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.863309e-07	k: 0	n:3740000
Cons ci ratio: 2.882415e-03	ci left: 3.304135e-01	ci right 3.313675e-01	k: 1237530	n:3740000
KS ci ratio: 2.263212e+00	ci left: 6.476185e-08	ci right 1.931733e-06	k: 2	n:3740000
POM121   3740000 perm   6776 sec   (552 perm/sec)   p_kst 5.347594e-07   p_cons 3.308904e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.837007e-07	k: 0	n:3750000
Cons ci ratio: 2.878481e-03	ci left: 3.304278e-01	ci right 3.313805e-01	k: 1240890	n:3750000
KS ci ratio: 2.263212e+00	ci left: 6.458915e-08	ci right 1.926582e-06	k: 2	n:3750000
POM121   3750000 perm   6806 sec   (551 perm/sec)   p_kst 5.333333e-07   p_cons 3.309040e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.810845e-07	k: 0	n:3760000
Cons ci ratio: 2.874665e-03	ci left: 3.304263e-01	ci right 3.313777e-01	k: 1244191	n:3760000
KS ci ratio: 2.263212e+00	ci left: 6.441737e-08	ci right 1.921458e-06	k: 2	n:3760000
POM121   3760000 perm   6836 sec   (550 perm/sec)   p_kst 5.319149e-07   p_cons 3.309019e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.784821e-07	k: 0	n:3770000
Cons ci ratio: 2.870956e-03	ci left: 3.304104e-01	ci right 3.313606e-01	k: 1247438	n:3770000
KS ci ratio: 2.263212e+00	ci left: 6.424650e-08	ci right 1.916361e-06	k: 2	n:3770000
POM121   3770000 perm   6867 sec   (549 perm/sec)   p_kst 5.305040e-07   p_cons 3.308854e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.758936e-07	k: 0	n:3780000
Cons ci ratio: 2.867101e-03	ci left: 3.304196e-01	ci right 3.313685e-01	k: 1250779	n:3780000
KS ci ratio: 2.263212e+00	ci left: 6.407654e-08	ci right 1.911292e-06	k: 2	n:3780000
POM121   3780000 perm   6897 sec   (548 perm/sec)   p_kst 5.291005e-07   p_cons 3.308939e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.733186e-07	k: 0	n:3790000
Cons ci ratio: 2.863413e-03	ci left: 3.304052e-01	ci right 3.313529e-01	k: 1254031	n:3790000
KS ci ratio: 2.263212e+00	ci left: 6.390747e-08	ci right 1.906249e-06	k: 2	n:3790000
POM121   3790000 perm   6928 sec   (547 perm/sec)   p_kst 5.277045e-07   p_cons 3.308789e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.707573e-07	k: 0	n:3800000
Cons ci ratio: 2.859512e-03	ci left: 3.304261e-01	ci right 3.313726e-01	k: 1257417	n:3800000
KS ci ratio: 2.263212e+00	ci left: 6.373929e-08	ci right 1.901232e-06	k: 2	n:3800000
POM121   3800000 perm   6958 sec   (546 perm/sec)   p_kst 5.263158e-07   p_cons 3.308992e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.682094e-07	k: 0	n:3810000
Cons ci ratio: 2.855718e-03	ci left: 3.304328e-01	ci right 3.313780e-01	k: 1260749	n:3810000
KS ci ratio: 2.263212e+00	ci left: 6.357200e-08	ci right 1.896242e-06	k: 2	n:3810000
POM121   3810000 perm   6988 sec   (545 perm/sec)   p_kst 5.249344e-07   p_cons 3.309052e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.656748e-07	k: 0	n:3820000
Cons ci ratio: 2.851959e-03	ci left: 3.304363e-01	ci right 3.313802e-01	k: 1264069	n:3820000
KS ci ratio: 2.263212e+00	ci left: 6.340558e-08	ci right 1.891278e-06	k: 2	n:3820000
POM121   3820000 perm   7019 sec   (544 perm/sec)   p_kst 5.235602e-07   p_cons 3.309081e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.631534e-07	k: 0	n:3830000
Cons ci ratio: 2.848146e-03	ci left: 3.304504e-01	ci right 3.313932e-01	k: 1267430	n:3830000
KS ci ratio: 2.263212e+00	ci left: 6.324003e-08	ci right 1.886340e-06	k: 2	n:3830000
POM121   3830000 perm   7050 sec   (543 perm/sec)   p_kst 5.221932e-07   p_cons 3.309217e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.606452e-07	k: 0	n:3840000
Cons ci ratio: 2.844473e-03	ci left: 3.304453e-01	ci right 3.313868e-01	k: 1270717	n:3840000
KS ci ratio: 2.263212e+00	ci left: 6.307534e-08	ci right 1.881428e-06	k: 2	n:3840000
POM121   3840000 perm   7080 sec   (542 perm/sec)   p_kst 5.208333e-07   p_cons 3.309159e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.581500e-07	k: 0	n:3850000
Cons ci ratio: 2.840643e-03	ci left: 3.304666e-01	ci right 3.314069e-01	k: 1274106	n:3850000
KS ci ratio: 2.263212e+00	ci left: 6.291151e-08	ci right 1.876541e-06	k: 2	n:3850000
POM121   3850000 perm   7111 sec   (541 perm/sec)   p_kst 5.194805e-07   p_cons 3.309366e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.556678e-07	k: 0	n:3860000
Cons ci ratio: 2.837093e-03	ci left: 3.304466e-01	ci right 3.313857e-01	k: 1277336	n:3860000
KS ci ratio: 2.263212e+00	ci left: 6.274852e-08	ci right 1.871679e-06	k: 2	n:3860000
POM121   3860000 perm   7142 sec   (540 perm/sec)   p_kst 5.181347e-07   p_cons 3.309161e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.531984e-07	k: 0	n:3870000
Cons ci ratio: 2.833468e-03	ci left: 3.304405e-01	ci right 3.313784e-01	k: 1280619	n:3870000
KS ci ratio: 2.263212e+00	ci left: 6.258638e-08	ci right 1.866843e-06	k: 2	n:3870000
POM121   3870000 perm   7172 sec   (540 perm/sec)   p_kst 5.167959e-07   p_cons 3.309093e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.507417e-07	k: 0	n:3880000
Cons ci ratio: 2.829879e-03	ci left: 3.304310e-01	ci right 3.313677e-01	k: 1283889	n:3880000
KS ci ratio: 2.263212e+00	ci left: 6.242508e-08	ci right 1.862032e-06	k: 2	n:3880000
POM121   3880000 perm   7204 sec   (539 perm/sec)   p_kst 5.154639e-07   p_cons 3.308992e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.482976e-07	k: 0	n:3890000
Cons ci ratio: 2.826177e-03	ci left: 3.304414e-01	ci right 3.313768e-01	k: 1287236	n:3890000
KS ci ratio: 2.263212e+00	ci left: 6.226460e-08	ci right 1.857245e-06	k: 2	n:3890000
POM121   3890000 perm   7235 sec   (538 perm/sec)   p_kst 5.141388e-07   p_cons 3.309090e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.458661e-07	k: 0	n:3900000
Cons ci ratio: 2.822756e-03	ci left: 3.304099e-01	ci right 3.313442e-01	k: 1290420	n:3900000
KS ci ratio: 2.263212e+00	ci left: 6.210495e-08	ci right 1.852483e-06	k: 2	n:3900000
POM121   3900000 perm   7266 sec   (537 perm/sec)   p_kst 5.128205e-07   p_cons 3.308769e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.434470e-07	k: 0	n:3910000
Cons ci ratio: 2.819091e-03	ci left: 3.304188e-01	ci right 3.313518e-01	k: 1293761	n:3910000
KS ci ratio: 2.263212e+00	ci left: 6.194611e-08	ci right 1.847745e-06	k: 2	n:3910000
POM121   3910000 perm   7297 sec   (536 perm/sec)   p_kst 5.115090e-07   p_cons 3.308852e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.410402e-07	k: 0	n:3920000
Cons ci ratio: 2.815532e-03	ci left: 3.304133e-01	ci right 3.313451e-01	k: 1297046	n:3920000
KS ci ratio: 2.263212e+00	ci left: 6.178809e-08	ci right 1.843031e-06	k: 2	n:3920000
POM121   3920000 perm   7327 sec   (535 perm/sec)   p_kst 5.102041e-07   p_cons 3.308791e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.386457e-07	k: 0	n:3930000
Cons ci ratio: 2.811975e-03	ci left: 3.304096e-01	ci right 3.313403e-01	k: 1300338	n:3930000
KS ci ratio: 2.263212e+00	ci left: 6.163087e-08	ci right 1.838342e-06	k: 2	n:3930000
POM121   3930000 perm   7358 sec   (534 perm/sec)   p_kst 5.089059e-07   p_cons 3.308748e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.362634e-07	k: 0	n:3940000
Cons ci ratio: 2.808402e-03	ci left: 3.304105e-01	ci right 3.313400e-01	k: 1303648	n:3940000
KS ci ratio: 2.263212e+00	ci left: 6.147444e-08	ci right 1.833676e-06	k: 2	n:3940000
POM121   3940000 perm   7388 sec   (533 perm/sec)   p_kst 5.076142e-07   p_cons 3.308751e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.338931e-07	k: 0	n:3950000
Cons ci ratio: 2.804790e-03	ci left: 3.304198e-01	ci right 3.313481e-01	k: 1306991	n:3950000
KS ci ratio: 2.263212e+00	ci left: 6.131881e-08	ci right 1.829034e-06	k: 2	n:3950000
POM121   3950000 perm   7420 sec   (532 perm/sec)   p_kst 5.063291e-07   p_cons 3.308838e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.315348e-07	k: 0	n:3960000
Cons ci ratio: 2.801145e-03	ci left: 3.304363e-01	ci right 3.313634e-01	k: 1310363	n:3960000
KS ci ratio: 2.263212e+00	ci left: 6.116397e-08	ci right 1.824415e-06	k: 2	n:3960000
POM121   3960000 perm   7451 sec   (531 perm/sec)   p_kst 5.050505e-07   p_cons 3.308997e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.291883e-07	k: 0	n:3970000
Cons ci ratio: 2.797703e-03	ci left: 3.304230e-01	ci right 3.313490e-01	k: 1313617	n:3970000
KS ci ratio: 2.263212e+00	ci left: 6.100990e-08	ci right 1.819819e-06	k: 2	n:3970000
POM121   3970000 perm   7483 sec   (531 perm/sec)   p_kst 5.037783e-07   p_cons 3.308859e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.268537e-07	k: 0	n:3980000
Cons ci ratio: 2.794346e-03	ci left: 3.303983e-01	ci right 3.313231e-01	k: 1316825	n:3980000
KS ci ratio: 2.263212e+00	ci left: 6.085661e-08	ci right 1.815247e-06	k: 2	n:3980000
POM121   3980000 perm   7514 sec   (530 perm/sec)   p_kst 5.025126e-07   p_cons 3.308606e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.245308e-07	k: 0	n:3990000
Cons ci ratio: 2.790844e-03	ci left: 3.303985e-01	ci right 3.313221e-01	k: 1320132	n:3990000
KS ci ratio: 2.263212e+00	ci left: 6.070409e-08	ci right 1.810697e-06	k: 2	n:3990000
POM121   3990000 perm   7546 sec   (529 perm/sec)   p_kst 5.012531e-07   p_cons 3.308602e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.222194e-07	k: 0	n:4000000
Cons ci ratio: 2.787280e-03	ci left: 3.304106e-01	ci right 3.313331e-01	k: 1323487	n:4000000
KS ci ratio: 2.263212e+00	ci left: 6.055233e-08	ci right 1.806171e-06	k: 2	n:4000000
POM121   4000000 perm   7577 sec   (528 perm/sec)   p_kst 5.000000e-07   p_cons 3.308718e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.199196e-07	k: 0	n:4010000
Cons ci ratio: 2.783759e-03	ci left: 3.304183e-01	ci right 3.313396e-01	k: 1326824	n:4010000
KS ci ratio: 2.263212e+00	ci left: 6.040132e-08	ci right 1.801667e-06	k: 2	n:4010000
POM121   4010000 perm   7609 sec   (527 perm/sec)   p_kst 4.987531e-07   p_cons 3.308788e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.176313e-07	k: 0	n:4020000
Cons ci ratio: 2.780481e-03	ci left: 3.303891e-01	ci right 3.313092e-01	k: 1330013	n:4020000
KS ci ratio: 1.959999e+00	ci left: 1.538986e-07	ci right 2.180912e-06	k: 3	n:4020000
POM121   4020000 perm   7641 sec   (526 perm/sec)   p_kst 7.462687e-07   p_cons 3.308490e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.153543e-07	k: 0	n:4030000
Cons ci ratio: 2.777167e-03	ci left: 3.303677e-01	ci right 3.312867e-01	k: 1333233	n:4030000
KS ci ratio: 1.959999e+00	ci left: 1.535167e-07	ci right 2.175500e-06	k: 3	n:4030000
POM121   4030000 perm   7673 sec   (525 perm/sec)   p_kst 7.444169e-07   p_cons 3.308270e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.130886e-07	k: 0	n:4040000
Cons ci ratio: 2.773883e-03	ci left: 3.303434e-01	ci right 3.312613e-01	k: 1336441	n:4040000
KS ci ratio: 1.959999e+00	ci left: 1.531367e-07	ci right 2.170116e-06	k: 3	n:4040000
POM121   4040000 perm   7705 sec   (524 perm/sec)   p_kst 7.425743e-07   p_cons 3.308022e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.108340e-07	k: 0	n:4050000
Cons ci ratio: 2.770508e-03	ci left: 3.303358e-01	ci right 3.312525e-01	k: 1339716	n:4050000
KS ci ratio: 1.959999e+00	ci left: 1.527586e-07	ci right 2.164757e-06	k: 3	n:4050000
POM121   4050000 perm   7738 sec   (523 perm/sec)   p_kst 7.407407e-07   p_cons 3.307941e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.085906e-07	k: 0	n:4060000
Cons ci ratio: 2.767189e-03	ci left: 3.303212e-01	ci right 3.312367e-01	k: 1342962	n:4060000
KS ci ratio: 1.959999e+00	ci left: 1.523823e-07	ci right 2.159425e-06	k: 3	n:4060000
POM121   4060000 perm   7770 sec   (522 perm/sec)   p_kst 7.389163e-07   p_cons 3.307788e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.063582e-07	k: 0	n:4070000
Cons ci ratio: 2.763798e-03	ci left: 3.303201e-01	ci right 3.312345e-01	k: 1346263	n:4070000
KS ci ratio: 1.959999e+00	ci left: 1.520079e-07	ci right 2.154120e-06	k: 3	n:4070000
POM121   4070000 perm   7803 sec   (522 perm/sec)   p_kst 7.371007e-07   p_cons 3.307771e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.041367e-07	k: 0	n:4080000
Cons ci ratio: 2.760356e-03	ci left: 3.303290e-01	ci right 3.312423e-01	k: 1349605	n:4080000
KS ci ratio: 1.959999e+00	ci left: 1.516353e-07	ci right 2.148840e-06	k: 3	n:4080000
POM121   4080000 perm   7835 sec   (521 perm/sec)   p_kst 7.352941e-07   p_cons 3.307855e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.019261e-07	k: 0	n:4090000
Cons ci ratio: 2.756881e-03	ci left: 3.303455e-01	ci right 3.312577e-01	k: 1352978	n:4090000
KS ci ratio: 1.959999e+00	ci left: 1.512646e-07	ci right 2.143586e-06	k: 3	n:4090000
POM121   4090000 perm   7867 sec   (520 perm/sec)   p_kst 7.334963e-07   p_cons 3.308015e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.997263e-07	k: 0	n:4100000
Cons ci ratio: 2.753451e-03	ci left: 3.303565e-01	ci right 3.312676e-01	k: 1356329	n:4100000
KS ci ratio: 1.959999e+00	ci left: 1.508957e-07	ci right 2.138358e-06	k: 3	n:4100000
POM121   4100000 perm   7900 sec   (519 perm/sec)   p_kst 7.317073e-07   p_cons 3.308120e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.975372e-07	k: 0	n:4110000
Cons ci ratio: 2.750141e-03	ci left: 3.303505e-01	ci right 3.312605e-01	k: 1359610	n:4110000
KS ci ratio: 1.959999e+00	ci left: 1.505285e-07	ci right 2.133155e-06	k: 3	n:4110000
POM121   4110000 perm   7933 sec   (518 perm/sec)   p_kst 7.299270e-07   p_cons 3.308054e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.953587e-07	k: 0	n:4120000
Cons ci ratio: 2.746840e-03	ci left: 3.303447e-01	ci right 3.312536e-01	k: 1362892	n:4120000
KS ci ratio: 1.959999e+00	ci left: 1.501632e-07	ci right 2.127977e-06	k: 3	n:4120000
POM121   4120000 perm   7965 sec   (517 perm/sec)   p_kst 7.281553e-07   p_cons 3.307990e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.931908e-07	k: 0	n:4130000
Cons ci ratio: 2.743537e-03	ci left: 3.303414e-01	ci right 3.312492e-01	k: 1366184	n:4130000
KS ci ratio: 1.959999e+00	ci left: 1.497996e-07	ci right 2.122825e-06	k: 3	n:4130000
POM121   4130000 perm   7998 sec   (516 perm/sec)   p_kst 7.263923e-07   p_cons 3.307952e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.910333e-07	k: 0	n:4140000
Cons ci ratio: 2.740308e-03	ci left: 3.303279e-01	ci right 3.312346e-01	k: 1369434	n:4140000
KS ci ratio: 1.959999e+00	ci left: 1.494377e-07	ci right 2.117697e-06	k: 3	n:4140000
POM121   4140000 perm   8031 sec   (516 perm/sec)   p_kst 7.246377e-07   p_cons 3.307812e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.888862e-07	k: 0	n:4150000
Cons ci ratio: 2.737078e-03	ci left: 3.303165e-01	ci right 3.312221e-01	k: 1372692	n:4150000
KS ci ratio: 1.959999e+00	ci left: 1.490776e-07	ci right 2.112594e-06	k: 3	n:4150000
POM121   4150000 perm   8064 sec   (515 perm/sec)   p_kst 7.228916e-07   p_cons 3.307692e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.867495e-07	k: 0	n:4160000
Cons ci ratio: 2.733779e-03	ci left: 3.303183e-01	ci right 3.312228e-01	k: 1376005	n:4160000
KS ci ratio: 1.959999e+00	ci left: 1.487193e-07	ci right 2.107516e-06	k: 3	n:4160000
POM121   4160000 perm   8098 sec   (514 perm/sec)   p_kst 7.211538e-07   p_cons 3.307704e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.846230e-07	k: 0	n:4170000
Cons ci ratio: 2.730530e-03	ci left: 3.303139e-01	ci right 3.312173e-01	k: 1379292	n:4170000
KS ci ratio: 1.959999e+00	ci left: 1.483626e-07	ci right 2.102462e-06	k: 3	n:4170000
POM121   4170000 perm   8136 sec   (513 perm/sec)   p_kst 7.194245e-07   p_cons 3.307655e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.825067e-07	k: 0	n:4180000
Cons ci ratio: 2.727296e-03	ci left: 3.303088e-01	ci right 3.312111e-01	k: 1382576	n:4180000
KS ci ratio: 1.959999e+00	ci left: 1.480077e-07	ci right 2.097432e-06	k: 3	n:4180000
POM121   4180000 perm   8180 sec   (511 perm/sec)   p_kst 7.177033e-07   p_cons 3.307598e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.804004e-07	k: 0	n:4190000
Cons ci ratio: 2.724141e-03	ci left: 3.302929e-01	ci right 3.311942e-01	k: 1385815	n:4190000
KS ci ratio: 1.959999e+00	ci left: 1.476545e-07	ci right 2.092427e-06	k: 3	n:4190000
POM121   4190000 perm   8224 sec   (510 perm/sec)   p_kst 7.159905e-07   p_cons 3.307434e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.783042e-07	k: 0	n:4200000
Cons ci ratio: 2.720768e-03	ci left: 3.303143e-01	ci right 3.312145e-01	k: 1389210	n:4200000
KS ci ratio: 1.959999e+00	ci left: 1.473029e-07	ci right 2.087445e-06	k: 3	n:4200000
POM121   4200000 perm   8264 sec   (508 perm/sec)   p_kst 7.142857e-07   p_cons 3.307643e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.762180e-07	k: 0	n:4210000
Cons ci ratio: 2.717583e-03	ci left: 3.303069e-01	ci right 3.312060e-01	k: 1392484	n:4210000
KS ci ratio: 1.959999e+00	ci left: 1.469530e-07	ci right 2.082486e-06	k: 3	n:4210000
POM121   4210000 perm   8299 sec   (507 perm/sec)   p_kst 7.125891e-07   p_cons 3.307563e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.741417e-07	k: 0	n:4220000
Cons ci ratio: 2.714342e-03	ci left: 3.303106e-01	ci right 3.312086e-01	k: 1395805	n:4220000
KS ci ratio: 1.959999e+00	ci left: 1.466048e-07	ci right 2.077551e-06	k: 3	n:4220000
POM121   4220000 perm   8334 sec   (506 perm/sec)   p_kst 7.109005e-07   p_cons 3.307595e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.720751e-07	k: 0	n:4230000
Cons ci ratio: 2.711134e-03	ci left: 3.303107e-01	ci right 3.312077e-01	k: 1399111	n:4230000
KS ci ratio: 1.959999e+00	ci left: 1.462582e-07	ci right 2.072640e-06	k: 3	n:4230000
POM121   4230000 perm   8368 sec   (505 perm/sec)   p_kst 7.092199e-07   p_cons 3.307591e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.700184e-07	k: 0	n:4240000
Cons ci ratio: 2.707965e-03	ci left: 3.303064e-01	ci right 3.312023e-01	k: 1402398	n:4240000
KS ci ratio: 1.959999e+00	ci left: 1.459133e-07	ci right 2.067752e-06	k: 3	n:4240000
POM121   4240000 perm   8403 sec   (505 perm/sec)   p_kst 7.075472e-07   p_cons 3.307542e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.679713e-07	k: 0	n:4250000
Cons ci ratio: 2.704828e-03	ci left: 3.302986e-01	ci right 3.311934e-01	k: 1405670	n:4250000
KS ci ratio: 1.959999e+00	ci left: 1.455699e-07	ci right 2.062886e-06	k: 3	n:4250000
POM121   4250000 perm   8438 sec   (504 perm/sec)   p_kst 7.058824e-07   p_cons 3.307459e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.659338e-07	k: 0	n:4260000
Cons ci ratio: 2.701742e-03	ci left: 3.302842e-01	ci right 3.311780e-01	k: 1408914	n:4260000
KS ci ratio: 1.959999e+00	ci left: 1.452282e-07	ci right 2.058044e-06	k: 3	n:4260000
POM121   4260000 perm   8472 sec   (503 perm/sec)   p_kst 7.042254e-07   p_cons 3.307310e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.639058e-07	k: 0	n:4270000
Cons ci ratio: 2.698613e-03	ci left: 3.302788e-01	ci right 3.311715e-01	k: 1412196	n:4270000
KS ci ratio: 1.959999e+00	ci left: 1.448881e-07	ci right 2.053224e-06	k: 3	n:4270000
POM121   4270000 perm   8507 sec   (502 perm/sec)   p_kst 7.025761e-07   p_cons 3.307251e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.618874e-07	k: 0	n:4280000
Cons ci ratio: 2.695355e-03	ci left: 3.302963e-01	ci right 3.311880e-01	k: 1415576	n:4280000
KS ci ratio: 1.959999e+00	ci left: 1.445496e-07	ci right 2.048427e-06	k: 3	n:4280000
POM121   4280000 perm   8541 sec   (501 perm/sec)   p_kst 7.009346e-07   p_cons 3.307421e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.598783e-07	k: 0	n:4290000
Cons ci ratio: 2.692198e-03	ci left: 3.302991e-01	ci right 3.311897e-01	k: 1418893	n:4290000
KS ci ratio: 1.959999e+00	ci left: 1.442126e-07	ci right 2.043652e-06	k: 3	n:4290000
POM121   4290000 perm   8575 sec   (500 perm/sec)   p_kst 6.993007e-07   p_cons 3.307443e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.578786e-07	k: 0	n:4300000
Cons ci ratio: 2.689029e-03	ci left: 3.303058e-01	ci right 3.311954e-01	k: 1422227	n:4300000
KS ci ratio: 1.959999e+00	ci left: 1.438773e-07	ci right 2.038899e-06	k: 3	n:4300000
POM121   4300000 perm   8611 sec   (499 perm/sec)   p_kst 6.976744e-07   p_cons 3.307505e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.558881e-07	k: 0	n:4310000
Cons ci ratio: 2.685936e-03	ci left: 3.303015e-01	ci right 3.311901e-01	k: 1425514	n:4310000
KS ci ratio: 1.959999e+00	ci left: 1.435434e-07	ci right 2.034169e-06	k: 3	n:4310000
POM121   4310000 perm   8645 sec   (499 perm/sec)   p_kst 6.960557e-07   p_cons 3.307457e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.539069e-07	k: 0	n:4320000
Cons ci ratio: 2.682798e-03	ci left: 3.303066e-01	ci right 3.311941e-01	k: 1428841	n:4320000
KS ci ratio: 1.959999e+00	ci left: 1.432112e-07	ci right 2.029460e-06	k: 3	n:4320000
POM121   4320000 perm   8681 sec   (498 perm/sec)   p_kst 6.944444e-07   p_cons 3.307502e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.519348e-07	k: 0	n:4330000
Cons ci ratio: 2.679596e-03	ci left: 3.303241e-01	ci right 3.312106e-01	k: 1432222	n:4330000
KS ci ratio: 1.959999e+00	ci left: 1.428804e-07	ci right 2.024773e-06	k: 3	n:4330000
POM121   4330000 perm   8715 sec   (497 perm/sec)   p_kst 6.928406e-07   p_cons 3.307672e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.499719e-07	k: 0	n:4340000
Cons ci ratio: 2.676515e-03	ci left: 3.303233e-01	ci right 3.312088e-01	k: 1435524	n:4340000
KS ci ratio: 1.959999e+00	ci left: 1.425512e-07	ci right 2.020108e-06	k: 3	n:4340000
POM121   4340000 perm   8750 sec   (496 perm/sec)   p_kst 6.912442e-07   p_cons 3.307659e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.480179e-07	k: 0	n:4350000
Cons ci ratio: 2.673530e-03	ci left: 3.303082e-01	ci right 3.311927e-01	k: 1438764	n:4350000
KS ci ratio: 1.959999e+00	ci left: 1.422235e-07	ci right 2.015464e-06	k: 3	n:4350000
POM121   4350000 perm   8785 sec   (495 perm/sec)   p_kst 6.896552e-07   p_cons 3.307503e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.460729e-07	k: 0	n:4360000
Cons ci ratio: 2.670549e-03	ci left: 3.302944e-01	ci right 3.311779e-01	k: 1442009	n:4360000
KS ci ratio: 1.959999e+00	ci left: 1.418973e-07	ci right 2.010841e-06	k: 3	n:4360000
POM121   4360000 perm   8819 sec   (494 perm/sec)   p_kst 6.880734e-07   p_cons 3.307360e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.441368e-07	k: 0	n:4370000
Cons ci ratio: 2.667474e-03	ci left: 3.302978e-01	ci right 3.311802e-01	k: 1445329	n:4370000
KS ci ratio: 1.959999e+00	ci left: 1.415726e-07	ci right 2.006240e-06	k: 3	n:4370000
POM121   4370000 perm   8855 sec   (493 perm/sec)   p_kst 6.864989e-07   p_cons 3.307389e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.422096e-07	k: 0	n:4380000
Cons ci ratio: 2.664350e-03	ci left: 3.303112e-01	ci right 3.311927e-01	k: 1448693	n:4380000
KS ci ratio: 1.959999e+00	ci left: 1.412494e-07	ci right 2.001659e-06	k: 3	n:4380000
POM121   4380000 perm   8890 sec   (493 perm/sec)   p_kst 6.849315e-07   p_cons 3.307518e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.402911e-07	k: 0	n:4390000
Cons ci ratio: 2.661446e-03	ci left: 3.302897e-01	ci right 3.311702e-01	k: 1451904	n:4390000
KS ci ratio: 1.959999e+00	ci left: 1.409276e-07	ci right 1.997100e-06	k: 3	n:4390000
POM121   4390000 perm   8925 sec   (492 perm/sec)   p_kst 6.833713e-07   p_cons 3.307298e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.383813e-07	k: 0	n:4400000
Cons ci ratio: 2.658363e-03	ci left: 3.302997e-01	ci right 3.311791e-01	k: 1455253	n:4400000
KS ci ratio: 1.959999e+00	ci left: 1.406073e-07	ci right 1.992561e-06	k: 3	n:4400000
POM121   4400000 perm   8961 sec   (491 perm/sec)   p_kst 6.818182e-07   p_cons 3.307393e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.364803e-07	k: 0	n:4410000
Cons ci ratio: 2.655331e-03	ci left: 3.303028e-01	ci right 3.311813e-01	k: 1458572	n:4410000
KS ci ratio: 1.959999e+00	ci left: 1.402885e-07	ci right 1.988042e-06	k: 3	n:4410000
POM121   4410000 perm   8997 sec   (490 perm/sec)   p_kst 6.802721e-07   p_cons 3.307420e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.345878e-07	k: 0	n:4420000
Cons ci ratio: 2.652355e-03	ci left: 3.302985e-01	ci right 3.311759e-01	k: 1461858	n:4420000
KS ci ratio: 1.959999e+00	ci left: 1.399711e-07	ci right 1.983545e-06	k: 3	n:4420000
POM121   4420000 perm   9032 sec   (489 perm/sec)   p_kst 6.787330e-07   p_cons 3.307371e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.327038e-07	k: 0	n:4430000
Cons ci ratio: 2.649407e-03	ci left: 3.302910e-01	ci right 3.311675e-01	k: 1465130	n:4430000
KS ci ratio: 1.959999e+00	ci left: 1.396551e-07	ci right 1.979067e-06	k: 3	n:4430000
POM121   4430000 perm   9068 sec   (489 perm/sec)   p_kst 6.772009e-07   p_cons 3.307291e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.308284e-07	k: 0	n:4440000
Cons ci ratio: 2.646468e-03	ci left: 3.302838e-01	ci right 3.311592e-01	k: 1468403	n:4440000
KS ci ratio: 1.959999e+00	ci left: 1.393406e-07	ci right 1.974610e-06	k: 3	n:4440000
POM121   4440000 perm   9104 sec   (488 perm/sec)   p_kst 6.756757e-07   p_cons 3.307214e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.289613e-07	k: 0	n:4450000
Cons ci ratio: 2.643415e-03	ci left: 3.302973e-01	ci right 3.311717e-01	k: 1471768	n:4450000
KS ci ratio: 1.959999e+00	ci left: 1.390275e-07	ci right 1.970172e-06	k: 3	n:4450000
POM121   4450000 perm   9140 sec   (487 perm/sec)   p_kst 6.741573e-07   p_cons 3.307344e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.271027e-07	k: 0	n:4460000
Cons ci ratio: 2.640352e-03	ci left: 3.303143e-01	ci right 3.311878e-01	k: 1475149	n:4460000
KS ci ratio: 1.959999e+00	ci left: 1.387157e-07	ci right 1.965755e-06	k: 3	n:4460000
POM121   4460000 perm   9175 sec   (486 perm/sec)   p_kst 6.726457e-07   p_cons 3.307509e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.252523e-07	k: 0	n:4470000
Cons ci ratio: 2.637388e-03	ci left: 3.303162e-01	ci right 3.311887e-01	k: 1478463	n:4470000
KS ci ratio: 1.959999e+00	ci left: 1.384054e-07	ci right 1.961357e-06	k: 3	n:4470000
POM121   4470000 perm   9210 sec   (485 perm/sec)   p_kst 6.711409e-07   p_cons 3.307523e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.234103e-07	k: 0	n:4480000
Cons ci ratio: 2.634498e-03	ci left: 3.303074e-01	ci right 3.311790e-01	k: 1481729	n:4480000
KS ci ratio: 1.959999e+00	ci left: 1.380965e-07	ci right 1.956979e-06	k: 3	n:4480000
POM121   4480000 perm   9246 sec   (485 perm/sec)   p_kst 6.696429e-07   p_cons 3.307431e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.215764e-07	k: 0	n:4490000
Cons ci ratio: 2.631518e-03	ci left: 3.303154e-01	ci right 3.311860e-01	k: 1485070	n:4490000
KS ci ratio: 1.959999e+00	ci left: 1.377889e-07	ci right 1.952621e-06	k: 3	n:4490000
POM121   4490000 perm   9282 sec   (484 perm/sec)   p_kst 6.681514e-07   p_cons 3.307506e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.197507e-07	k: 0	n:4500000
Cons ci ratio: 2.628622e-03	ci left: 3.303109e-01	ci right 3.311805e-01	k: 1488355	n:4500000
KS ci ratio: 1.959999e+00	ci left: 1.374827e-07	ci right 1.948282e-06	k: 3	n:4500000
POM121   4500000 perm   9318 sec   (483 perm/sec)   p_kst 6.666667e-07   p_cons 3.307456e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.179330e-07	k: 0	n:4510000
Cons ci ratio: 2.625785e-03	ci left: 3.302982e-01	ci right 3.311668e-01	k: 1491603	n:4510000
KS ci ratio: 1.959999e+00	ci left: 1.371779e-07	ci right 1.943962e-06	k: 3	n:4510000
POM121   4510000 perm   9354 sec   (482 perm/sec)   p_kst 6.651885e-07   p_cons 3.307324e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.161234e-07	k: 0	n:4520000
Cons ci ratio: 2.622838e-03	ci left: 3.303054e-01	ci right 3.311731e-01	k: 1494941	n:4520000
KS ci ratio: 1.959999e+00	ci left: 1.368744e-07	ci right 1.939661e-06	k: 3	n:4520000
POM121   4520000 perm   9390 sec   (481 perm/sec)   p_kst 6.637168e-07   p_cons 3.307392e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.143218e-07	k: 0	n:4530000
Cons ci ratio: 2.619934e-03	ci left: 3.303071e-01	ci right 3.311739e-01	k: 1498254	n:4530000
KS ci ratio: 1.959999e+00	ci left: 1.365722e-07	ci right 1.935379e-06	k: 3	n:4530000
POM121   4530000 perm   9425 sec   (481 perm/sec)   p_kst 6.622517e-07   p_cons 3.307404e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.125282e-07	k: 0	n:4540000
Cons ci ratio: 2.617074e-03	ci left: 3.303031e-01	ci right 3.311689e-01	k: 1501541	n:4540000
KS ci ratio: 1.959999e+00	ci left: 1.362714e-07	ci right 1.931116e-06	k: 3	n:4540000
POM121   4540000 perm   9462 sec   (480 perm/sec)   p_kst 6.607930e-07   p_cons 3.307359e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.107424e-07	k: 0	n:4550000
Cons ci ratio: 2.614149e-03	ci left: 3.303117e-01	ci right 3.311765e-01	k: 1504885	n:4550000
KS ci ratio: 1.959999e+00	ci left: 1.359719e-07	ci right 1.926872e-06	k: 3	n:4550000
POM121   4550000 perm   9498 sec   (479 perm/sec)   p_kst 6.593407e-07   p_cons 3.307440e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.089645e-07	k: 0	n:4560000
Cons ci ratio: 2.611258e-03	ci left: 3.303160e-01	ci right 3.311799e-01	k: 1508210	n:4560000
KS ci ratio: 1.959999e+00	ci left: 1.356737e-07	ci right 1.922646e-06	k: 3	n:4560000
POM121   4560000 perm   9534 sec   (478 perm/sec)   p_kst 6.578947e-07   p_cons 3.307478e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.071943e-07	k: 0	n:4570000
Cons ci ratio: 2.608363e-03	ci left: 3.303227e-01	ci right 3.311856e-01	k: 1511546	n:4570000
KS ci ratio: 1.959999e+00	ci left: 1.353769e-07	ci right 1.918439e-06	k: 3	n:4570000
POM121   4570000 perm   9571 sec   (477 perm/sec)   p_kst 6.564551e-07   p_cons 3.307540e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.054319e-07	k: 0	n:4580000
Cons ci ratio: 2.605632e-03	ci left: 3.303032e-01	ci right 3.311652e-01	k: 1514762	n:4580000
KS ci ratio: 1.959999e+00	ci left: 1.350813e-07	ci right 1.914251e-06	k: 3	n:4580000
POM121   4580000 perm   9608 sec   (477 perm/sec)   p_kst 6.550218e-07   p_cons 3.307341e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.036771e-07	k: 0	n:4590000
Cons ci ratio: 2.602833e-03	ci left: 3.302966e-01	ci right 3.311576e-01	k: 1518037	n:4590000
KS ci ratio: 1.959999e+00	ci left: 1.347870e-07	ci right 1.910080e-06	k: 3	n:4590000
POM121   4590000 perm   9645 sec   (476 perm/sec)   p_kst 6.535948e-07   p_cons 3.307270e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.019300e-07	k: 0	n:4600000
Cons ci ratio: 2.599999e-03	ci left: 3.302977e-01	ci right 3.311578e-01	k: 1521347	n:4600000
KS ci ratio: 1.959999e+00	ci left: 1.344940e-07	ci right 1.905928e-06	k: 3	n:4600000
POM121   4600000 perm   9682 sec   (475 perm/sec)   p_kst 6.521739e-07   p_cons 3.307276e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.001904e-07	k: 0	n:4610000
Cons ci ratio: 2.597124e-03	ci left: 3.303072e-01	ci right 3.311663e-01	k: 1524696	n:4610000
KS ci ratio: 1.959999e+00	ci left: 1.342022e-07	ci right 1.901793e-06	k: 3	n:4610000
POM121   4610000 perm   9719 sec   (474 perm/sec)   p_kst 6.507592e-07   p_cons 3.307367e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.984584e-07	k: 0	n:4620000
Cons ci ratio: 2.594391e-03	ci left: 3.302942e-01	ci right 3.311524e-01	k: 1527941	n:4620000
KS ci ratio: 1.959999e+00	ci left: 1.339117e-07	ci right 1.897677e-06	k: 3	n:4620000
POM121   4620000 perm   9822 sec   (470 perm/sec)   p_kst 6.493506e-07   p_cons 3.307232e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.967339e-07	k: 0	n:4630000
Cons ci ratio: 2.591595e-03	ci left: 3.302935e-01	ci right 3.311508e-01	k: 1531243	n:4630000
KS ci ratio: 1.959999e+00	ci left: 1.336225e-07	ci right 1.893578e-06	k: 3	n:4630000
POM121   4630000 perm   9859 sec   (470 perm/sec)   p_kst 6.479482e-07   p_cons 3.307220e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.950168e-07	k: 0	n:4640000
Cons ci ratio: 2.588715e-03	ci left: 3.303086e-01	ci right 3.311649e-01	k: 1534618	n:4640000
KS ci ratio: 1.959999e+00	ci left: 1.333345e-07	ci right 1.889497e-06	k: 3	n:4640000
POM121   4640000 perm   9896 sec   (469 perm/sec)   p_kst 6.465517e-07   p_cons 3.307366e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.933071e-07	k: 0	n:4650000
Cons ci ratio: 2.585977e-03	ci left: 3.303010e-01	ci right 3.311564e-01	k: 1537888	n:4650000
KS ci ratio: 1.959999e+00	ci left: 1.330478e-07	ci right 1.885434e-06	k: 3	n:4650000
POM121   4650000 perm   9934 sec   (468 perm/sec)   p_kst 6.451613e-07   p_cons 3.307286e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.916047e-07	k: 0	n:4660000
Cons ci ratio: 2.583240e-03	ci left: 3.302947e-01	ci right 3.311493e-01	k: 1541164	n:4660000
KS ci ratio: 1.959999e+00	ci left: 1.327623e-07	ci right 1.881388e-06	k: 3	n:4660000
POM121   4660000 perm   9970 sec   (467 perm/sec)   p_kst 6.437768e-07   p_cons 3.307219e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.899096e-07	k: 0	n:4670000
Cons ci ratio: 2.580547e-03	ci left: 3.302825e-01	ci right 3.311361e-01	k: 1544412	n:4670000
KS ci ratio: 1.959999e+00	ci left: 1.324780e-07	ci right 1.877359e-06	k: 3	n:4670000
POM121   4670000 perm   10008 sec   (467 perm/sec)   p_kst 6.423983e-07   p_cons 3.307092e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.882218e-07	k: 0	n:4680000
Cons ci ratio: 2.577834e-03	ci left: 3.302750e-01	ci right 3.311277e-01	k: 1547682	n:4680000
KS ci ratio: 1.959999e+00	ci left: 1.321949e-07	ci right 1.873348e-06	k: 3	n:4680000
POM121   4680000 perm   10045 sec   (466 perm/sec)   p_kst 6.410256e-07   p_cons 3.307013e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.865412e-07	k: 0	n:4690000
Cons ci ratio: 2.574998e-03	ci left: 3.302904e-01	ci right 3.311422e-01	k: 1551059	n:4690000
KS ci ratio: 1.959999e+00	ci left: 1.319131e-07	ci right 1.869353e-06	k: 3	n:4690000
POM121   4690000 perm   10082 sec   (465 perm/sec)   p_kst 6.396588e-07   p_cons 3.307162e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.848677e-07	k: 0	n:4700000
Cons ci ratio: 2.572223e-03	ci left: 3.302968e-01	ci right 3.311477e-01	k: 1554394	n:4700000
KS ci ratio: 1.959999e+00	ci left: 1.316324e-07	ci right 1.865376e-06	k: 3	n:4700000
POM121   4700000 perm   10118 sec   (465 perm/sec)   p_kst 6.382979e-07   p_cons 3.307221e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.832013e-07	k: 0	n:4710000
Cons ci ratio: 2.569493e-03	ci left: 3.302968e-01	ci right 3.311468e-01	k: 1557699	n:4710000
KS ci ratio: 1.959999e+00	ci left: 1.313529e-07	ci right 1.861416e-06	k: 3	n:4710000
POM121   4710000 perm   10156 sec   (464 perm/sec)   p_kst 6.369427e-07   p_cons 3.307217e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.815419e-07	k: 0	n:4720000
Cons ci ratio: 2.566796e-03	ci left: 3.302927e-01	ci right 3.311418e-01	k: 1560985	n:4720000
KS ci ratio: 1.959999e+00	ci left: 1.310746e-07	ci right 1.857472e-06	k: 3	n:4720000
POM121   4720000 perm   10193 sec   (463 perm/sec)   p_kst 6.355932e-07   p_cons 3.307172e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.798896e-07	k: 0	n:4730000
Cons ci ratio: 2.564009e-03	ci left: 3.303056e-01	ci right 3.311538e-01	k: 1564351	n:4730000
KS ci ratio: 1.959999e+00	ci left: 1.307975e-07	ci right 1.853545e-06	k: 3	n:4730000
POM121   4730000 perm   10231 sec   (462 perm/sec)   p_kst 6.342495e-07   p_cons 3.307296e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.782443e-07	k: 0	n:4740000
Cons ci ratio: 2.561327e-03	ci left: 3.303020e-01	ci right 3.311493e-01	k: 1567639	n:4740000
KS ci ratio: 1.959999e+00	ci left: 1.305216e-07	ci right 1.849635e-06	k: 3	n:4740000
POM121   4740000 perm   10268 sec   (462 perm/sec)   p_kst 6.329114e-07   p_cons 3.307255e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.766059e-07	k: 0	n:4750000
Cons ci ratio: 2.558612e-03	ci left: 3.303053e-01	ci right 3.311517e-01	k: 1570960	n:4750000
KS ci ratio: 1.959999e+00	ci left: 1.302468e-07	ci right 1.845741e-06	k: 3	n:4750000
POM121   4750000 perm   10307 sec   (461 perm/sec)   p_kst 6.315789e-07   p_cons 3.307284e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.749744e-07	k: 0	n:4760000
Cons ci ratio: 2.555979e-03	ci left: 3.302960e-01	ci right 3.311416e-01	k: 1574221	n:4760000
KS ci ratio: 1.959999e+00	ci left: 1.299732e-07	ci right 1.841863e-06	k: 3	n:4760000
POM121   4760000 perm   10345 sec   (460 perm/sec)   p_kst 6.302521e-07   p_cons 3.307187e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.733497e-07	k: 0	n:4770000
Cons ci ratio: 2.553347e-03	ci left: 3.302881e-01	ci right 3.311327e-01	k: 1577488	n:4770000
KS ci ratio: 1.959999e+00	ci left: 1.297007e-07	ci right 1.838002e-06	k: 3	n:4770000
POM121   4770000 perm   10383 sec   (459 perm/sec)   p_kst 6.289308e-07   p_cons 3.307103e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.717318e-07	k: 0	n:4780000
Cons ci ratio: 2.550620e-03	ci left: 3.302981e-01	ci right 3.311418e-01	k: 1580841	n:4780000
KS ci ratio: 1.959999e+00	ci left: 1.294293e-07	ci right 1.834156e-06	k: 3	n:4780000
POM121   4780000 perm   10421 sec   (459 perm/sec)   p_kst 6.276151e-07   p_cons 3.307199e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.701207e-07	k: 0	n:4790000
Cons ci ratio: 2.547973e-03	ci left: 3.302956e-01	ci right 3.311384e-01	k: 1584134	n:4790000
KS ci ratio: 1.959999e+00	ci left: 1.291591e-07	ci right 1.830327e-06	k: 3	n:4790000
POM121   4790000 perm   10458 sec   (458 perm/sec)   p_kst 6.263048e-07   p_cons 3.307169e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.685163e-07	k: 0	n:4800000
Cons ci ratio: 2.545350e-03	ci left: 3.302904e-01	ci right 3.311323e-01	k: 1587414	n:4800000
KS ci ratio: 1.959999e+00	ci left: 1.288900e-07	ci right 1.826514e-06	k: 3	n:4800000
POM121   4800000 perm   10497 sec   (457 perm/sec)   p_kst 6.250000e-07   p_cons 3.307113e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.669185e-07	k: 0	n:4810000
Cons ci ratio: 2.542681e-03	ci left: 3.302945e-01	ci right 3.311356e-01	k: 1590739	n:4810000
KS ci ratio: 1.959999e+00	ci left: 1.286221e-07	ci right 1.822717e-06	k: 3	n:4810000
POM121   4810000 perm   10534 sec   (457 perm/sec)   p_kst 6.237006e-07   p_cons 3.307150e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.653274e-07	k: 0	n:4820000
Cons ci ratio: 2.540051e-03	ci left: 3.302935e-01	ci right 3.311337e-01	k: 1594039	n:4820000
KS ci ratio: 1.959999e+00	ci left: 1.283552e-07	ci right 1.818935e-06	k: 3	n:4820000
POM121   4820000 perm   10573 sec   (456 perm/sec)   p_kst 6.224066e-07   p_cons 3.307135e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.637429e-07	k: 0	n:4830000
Cons ci ratio: 2.537423e-03	ci left: 3.302935e-01	ci right 3.311328e-01	k: 1597344	n:4830000
KS ci ratio: 1.959999e+00	ci left: 1.280895e-07	ci right 1.815169e-06	k: 3	n:4830000
POM121   4830000 perm   10611 sec   (455 perm/sec)   p_kst 6.211180e-07   p_cons 3.307130e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.621649e-07	k: 0	n:4840000
Cons ci ratio: 2.534786e-03	ci left: 3.302964e-01	ci right 3.311348e-01	k: 1600663	n:4840000
KS ci ratio: 1.959999e+00	ci left: 1.278248e-07	ci right 1.811419e-06	k: 3	n:4840000
POM121   4840000 perm   10650 sec   (454 perm/sec)   p_kst 6.198347e-07   p_cons 3.307155e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.605934e-07	k: 0	n:4850000
Cons ci ratio: 2.532140e-03	ci left: 3.303023e-01	ci right 3.311399e-01	k: 1603997	n:4850000
KS ci ratio: 1.959999e+00	ci left: 1.275613e-07	ci right 1.807684e-06	k: 3	n:4850000
POM121   4850000 perm   10689 sec   (454 perm/sec)   p_kst 6.185567e-07   p_cons 3.307210e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.590284e-07	k: 0	n:4860000
Cons ci ratio: 2.529538e-03	ci left: 3.303019e-01	ci right 3.311386e-01	k: 1607300	n:4860000
KS ci ratio: 1.959999e+00	ci left: 1.272988e-07	ci right 1.803965e-06	k: 3	n:4860000
POM121   4860000 perm   10728 sec   (453 perm/sec)   p_kst 6.172840e-07   p_cons 3.307202e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.574698e-07	k: 0	n:4870000
Cons ci ratio: 2.526926e-03	ci left: 3.303047e-01	ci right 3.311406e-01	k: 1610619	n:4870000
KS ci ratio: 1.959999e+00	ci left: 1.270374e-07	ci right 1.800260e-06	k: 3	n:4870000
POM121   4870000 perm   10768 sec   (452 perm/sec)   p_kst 6.160164e-07   p_cons 3.307226e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.559176e-07	k: 0	n:4880000
Cons ci ratio: 2.524384e-03	ci left: 3.302967e-01	ci right 3.311318e-01	k: 1613885	n:4880000
KS ci ratio: 1.959999e+00	ci left: 1.267771e-07	ci right 1.796571e-06	k: 3	n:4880000
POM121   4880000 perm   10806 sec   (452 perm/sec)   p_kst 6.147541e-07   p_cons 3.307141e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.543718e-07	k: 0	n:4890000
Cons ci ratio: 2.521913e-03	ci left: 3.302775e-01	ci right 3.311117e-01	k: 1617096	n:4890000
KS ci ratio: 1.959999e+00	ci left: 1.265178e-07	ci right 1.792897e-06	k: 3	n:4890000
POM121   4890000 perm   10846 sec   (451 perm/sec)   p_kst 6.134969e-07   p_cons 3.306945e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.528323e-07	k: 0	n:4900000
Cons ci ratio: 2.519393e-03	ci left: 3.302683e-01	ci right 3.311017e-01	k: 1620356	n:4900000
KS ci ratio: 1.959999e+00	ci left: 1.262596e-07	ci right 1.789238e-06	k: 3	n:4900000
POM121   4900000 perm   10886 sec   (450 perm/sec)   p_kst 6.122449e-07   p_cons 3.306849e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.512990e-07	k: 0	n:4910000
Cons ci ratio: 2.516671e-03	ci left: 3.302961e-01	ci right 3.311286e-01	k: 1623797	n:4910000
KS ci ratio: 1.959999e+00	ci left: 1.260025e-07	ci right 1.785594e-06	k: 3	n:4910000
POM121   4910000 perm   10926 sec   (449 perm/sec)   p_kst 6.109980e-07   p_cons 3.307122e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.497720e-07	k: 0	n:4920000
Cons ci ratio: 2.514022e-03	ci left: 3.303123e-01	ci right 3.311440e-01	k: 1627182	n:4920000
KS ci ratio: 1.959999e+00	ci left: 1.257464e-07	ci right 1.781965e-06	k: 3	n:4920000
POM121   4920000 perm   10965 sec   (449 perm/sec)   p_kst 6.097561e-07   p_cons 3.307280e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.482511e-07	k: 0	n:4930000
Cons ci ratio: 2.511466e-03	ci left: 3.303137e-01	ci right 3.311445e-01	k: 1630494	n:4930000
KS ci ratio: 1.959999e+00	ci left: 1.254913e-07	ci right 1.778350e-06	k: 3	n:4930000
POM121   4930000 perm   11032 sec   (447 perm/sec)   p_kst 6.085193e-07   p_cons 3.307290e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.467365e-07	k: 0	n:4940000
Cons ci ratio: 2.508956e-03	ci left: 3.303082e-01	ci right 3.311382e-01	k: 1633772	n:4940000
KS ci ratio: 1.959999e+00	ci left: 1.252373e-07	ci right 1.774751e-06	k: 3	n:4940000
POM121   4940000 perm   11074 sec   (446 perm/sec)   p_kst 6.072874e-07   p_cons 3.307231e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.452279e-07	k: 0	n:4950000
Cons ci ratio: 2.506407e-03	ci left: 3.303110e-01	ci right 3.311401e-01	k: 1637091	n:4950000
KS ci ratio: 1.959999e+00	ci left: 1.249843e-07	ci right 1.771165e-06	k: 3	n:4950000
POM121   4950000 perm   11114 sec   (445 perm/sec)   p_kst 6.060606e-07   p_cons 3.307255e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.437254e-07	k: 0	n:4960000
Cons ci ratio: 2.503869e-03	ci left: 3.303132e-01	ci right 3.311415e-01	k: 1640407	n:4960000
KS ci ratio: 1.959999e+00	ci left: 1.247323e-07	ci right 1.767594e-06	k: 3	n:4960000
POM121   4960000 perm   11154 sec   (445 perm/sec)   p_kst 6.048387e-07   p_cons 3.307272e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.422290e-07	k: 0	n:4970000
Cons ci ratio: 2.501289e-03	ci left: 3.303242e-01	ci right 3.311517e-01	k: 1643767	n:4970000
KS ci ratio: 1.959999e+00	ci left: 1.244813e-07	ci right 1.764038e-06	k: 3	n:4970000
POM121   4970000 perm   11193 sec   (444 perm/sec)   p_kst 6.036217e-07   p_cons 3.307378e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.407386e-07	k: 0	n:4980000
Cons ci ratio: 2.498823e-03	ci left: 3.303163e-01	ci right 3.311429e-01	k: 1647033	n:4980000
KS ci ratio: 1.959999e+00	ci left: 1.242314e-07	ci right 1.760496e-06	k: 3	n:4980000
POM121   4980000 perm   11233 sec   (443 perm/sec)   p_kst 6.024096e-07   p_cons 3.307295e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.392541e-07	k: 0	n:4990000
Cons ci ratio: 2.496282e-03	ci left: 3.303231e-01	ci right 3.311489e-01	k: 1650372	n:4990000
KS ci ratio: 1.959999e+00	ci left: 1.239824e-07	ci right 1.756968e-06	k: 3	n:4990000
POM121   4990000 perm   11272 sec   (443 perm/sec)   p_kst 6.012024e-07   p_cons 3.307359e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.377756e-07	k: 0	n:5000000
Cons ci ratio: 2.493771e-03	ci left: 3.303260e-01	ci right 3.311510e-01	k: 1653692	n:5000000
KS ci ratio: 1.959999e+00	ci left: 1.237344e-07	ci right 1.753454e-06	k: 3	n:5000000
POM121   5000000 perm   11313 sec   (442 perm/sec)   p_kst 6.000000e-07   p_cons 3.307384e-01   p_joint 0

Outputting figure to mutsig2_images.part000000000134/POM121.3_3003_5000000_6e-07_0.33074_0.png
                gene_name: POM121
               theta_stop: 3.9 
                    nperm: 5000000 
                     p_ks: 6.00e-07 
        ci_ks_bounds_left: 1.24e-07 
       ci_ks_bounds_right: 1.75e-06 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0 
     ci_joint_bounds_left: 0 
    ci_joint_bounds_right: 7.38e-07 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000134
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 134 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1649>
Subject: Job 9877957: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1649>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000135> was used as the working directory.
Started at Fri Oct  5 22:51:42 2012
Results reported at Fri Oct  5 22:53:45 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000135.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000135.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 135  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000135.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    116.32 sec.
    Max Memory :      1901 MB
    Max Swap   :      4658 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
135
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 135
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 135: processing genes 12151 - 12240
Calculating significance of each gene.
Using projection method.
12151	PON1	8.662859e-02
12152	PON2	2.131981e-02
12153	PON3	1
12154	POP1	1
12155	POP4	1
12156	POP5	1
12157	POP7	1
12158	POPDC2	1
12159	POPDC3	1
12160	POR	1
12161	PORCN	1
12162	POSTN	1
12163	POT1	1.613404e-01
12164	POTEA	1
12165	POTEC	1.163922e-04
12166	POTED	2.179791e-02
12167	POTEE	2.138968e-02
12168	POTEF	1
12169	POTEG	1
12170	POTEH	1
12171	POTEM	1
12172	POU1F1	1
12173	POU2AF1	1
12174	POU2F1	2.355490e-01
12175	POU2F2	1
12176	POU2F3	8.365806e-02
12177	POU3F1	1
12178	POU3F2	1
12179	POU3F3	1
12180	POU3F4	1
12181	POU4F1	1
12182	POU4F2	2.158855e-02
12183	POU4F3	1
12184	POU5F1	1
12185	POU5F1B	1
12186	POU5F2	1
12187	POU6F1	1
12188	POU6F2	1
12189	PPA1	1
12190	PPA2	1
12191	PPAN	1
12192	PPAN-P2RY11	1
12193	PPAP2A	1
12194	PPAP2B	1
12195	PPAP2C	1
12196	PPAPDC1A	1
12197	PPAPDC1B	1
12198	PPAPDC2	1
12199	PPAPDC3	1
12200	PPARA	1
12201	PPARD	1.333520e-01
12202	PPARG	6.669451e-02
12203	PPARGC1A	1
12204	PPARGC1B	9.730941e-02
12205	PPAT	1
12206	PPBP	1
12207	PPCDC	1
12208	PPCS	1
12209	PPDPF	1
12210	PPEF1	1.114253e-01
12211	PPEF2	1.072820e-01
12212	PPFIA1	1
12213	PPFIA2	1
12214	PPFIA3	1
12215	PPFIA4	1
12216	PPFIBP1	1
12217	PPFIBP2	2.015672e-01
12218	PPHLN1	1
12219	PPIA	1
12220	PPIAL4E	1
12221	PPIAL4G	1
12222	PPIB	1
12223	PPIC	1
12224	PPID	1
12225	PPIE	1
12226	PPIF	1
12227	PPIG	1
12228	PPIH	1
12229	PPIL1	1
12230	PPIL2	1
12231	PPIL3	1
12232	PPIL4	1
12233	PPIL5	1
12234	PPIL6	1
12235	PPIP5K1	1
12236	PPIP5K2	1
12237	PPL	3.471503e-01
12238	PPM1A	1
12239	PPM1B	1
12240	PPM1D	1
Done

Running MutSig 2:
Scatter job 135: processing genes 12151 - 12240
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
POTEC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.414688e-01	ci left: 6.623521e-02	ci right 7.641622e-02	k: 712	n:10000
Cons ci ratio: 1.847290e-02	ci left: 8.106001e-01	ci right 8.258141e-01	k: 8183	n:10000
KS ci ratio: 2.980694e-01	ci left: 1.446512e-02	ci right 1.962175e-02	k: 169	n:10000
POTEC   10000 perm   2 sec   (5785 perm/sec)   p_kst 1.690000e-02   p_cons 8.183000e-01   p_joint 7.120000e-02

Joint ci ratio: 1.075349e-01	ci left: 5.894035e-02	ci right 6.568759e-02	k: 1245	n:20000
Cons ci ratio: 1.303114e-02	ci left: 8.135928e-01	ci right 8.243143e-01	k: 16380	n:20000
KS ci ratio: 2.201831e-01	ci left: 1.388097e-02	ci right 1.736192e-02	k: 311	n:20000
POTEC   20000 perm   6 sec   (3087 perm/sec)   p_kst 1.555000e-02   p_cons 8.190000e-01   p_joint 6.225000e-02

Joint ci ratio: 8.298165e-02	ci left: 6.635326e-02	ci right 7.213050e-02	k: 2076	n:30000
Cons ci ratio: 1.061823e-02	ci left: 8.152013e-01	ci right 8.239367e-01	k: 24588	n:30000
KS ci ratio: 1.771081e-01	ci left: 1.464237e-02	ci right 1.751912e-02	k: 481	n:30000
POTEC   30000 perm   9 sec   (3471 perm/sec)   p_kst 1.603333e-02   p_cons 8.196000e-01   p_joint 6.920000e-02

Joint ci ratio: 7.920598e-02	ci left: 5.541006e-02	ci right 6.000441e-02	k: 2307	n:40000
Cons ci ratio: 9.749539e-03	ci left: 7.977079e-01	ci right 8.055482e-01	k: 32066	n:40000
KS ci ratio: 1.543189e-01	ci left: 1.464879e-02	ci right 1.712221e-02	k: 634	n:40000
POTEC   40000 perm   11 sec   (3660 perm/sec)   p_kst 1.585000e-02   p_cons 8.016500e-01   p_joint 5.767500e-02

Joint ci ratio: 7.127777e-02	ci left: 5.500327e-02	ci right 5.908834e-02	k: 2851	n:50000
Cons ci ratio: 8.742439e-03	ci left: 7.973120e-01	ci right 8.043330e-01	k: 40042	n:50000
KS ci ratio: 1.367850e-01	ci left: 1.505362e-02	ci right 1.728307e-02	k: 807	n:50000
POTEC   50000 perm   13 sec   (3755 perm/sec)   p_kst 1.614000e-02   p_cons 8.008400e-01   p_joint 5.702000e-02

Joint ci ratio: 6.047192e-02	ci left: 6.346737e-02	ci right 6.744146e-02	k: 3926	n:60000
Cons ci ratio: 7.563939e-03	ci left: 8.142850e-01	ci right 8.204842e-01	k: 49044	n:60000
KS ci ratio: 1.251694e-01	ci left: 1.507575e-02	ci right 1.710479e-02	k: 964	n:60000
POTEC   60000 perm   16 sec   (3825 perm/sec)   p_kst 1.606667e-02   p_cons 8.174000e-01   p_joint 6.543333e-02

Joint ci ratio: 5.248783e-02	ci left: 7.185966e-02	ci right 7.574718e-02	k: 5165	n:70000
Cons ci ratio: 6.988759e-03	ci left: 8.151214e-01	ci right 8.208522e-01	k: 57260	n:70000
KS ci ratio: 1.160855e-01	ci left: 1.509732e-02	ci right 1.697168e-02	k: 1121	n:70000
POTEC   70000 perm   18 sec   (3853 perm/sec)   p_kst 1.601429e-02   p_cons 8.180000e-01   p_joint 7.378571e-02

Joint ci ratio: 4.900388e-02	ci left: 7.224471e-02	ci right 7.588625e-02	k: 5924	n:80000
Cons ci ratio: 6.540945e-03	ci left: 8.151451e-01	ci right 8.205068e-01	k: 65427	n:80000
KS ci ratio: 1.098702e-01	ci left: 1.480128e-02	ci right 1.653411e-02	k: 1252	n:80000
POTEC   80000 perm   21 sec   (3861 perm/sec)   p_kst 1.565000e-02   p_cons 8.178375e-01   p_joint 7.405000e-02

Joint ci ratio: 4.205026e-02	ci left: 8.620094e-02	ci right 8.991455e-02	k: 7924	n:90000
Cons ci ratio: 6.168322e-03	ci left: 8.152288e-01	ci right 8.202840e-01	k: 73599	n:90000
KS ci ratio: 1.032385e-01	ci left: 1.495207e-02	ci right 1.659047e-02	k: 1418	n:90000
POTEC   90000 perm   24 sec   (3828 perm/sec)   p_kst 1.575556e-02   p_cons 8.177667e-01   p_joint 8.804444e-02

Joint ci ratio: 4.373883e-02	ci left: 7.272149e-02	ci right 7.598325e-02	k: 7434	n:100000
Cons ci ratio: 5.856426e-03	ci left: 8.151220e-01	ci right 8.199196e-01	k: 81753	n:100000
KS ci ratio: 9.834280e-02	ci left: 1.487028e-02	ci right 1.641799e-02	k: 1563	n:100000
POTEC   100000 perm   26 sec   (3794 perm/sec)   p_kst 1.563000e-02   p_cons 8.175300e-01   p_joint 7.434000e-02

Outputting figure to mutsig2_images.part000000000135/POTEC.3_1673_100000_0.01563_0.81753_0.07434.png
                gene_name: POTEC
               theta_stop: 0.098 
                    nperm: 100000 
                     p_ks: 0.016 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.016 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.074 
     ci_joint_bounds_left: 0.073 
    ci_joint_bounds_right: 0.076 

Current progress: 50 percent done.
POTEE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.653018e-03	ci left: 9.381717e-01	ci right 9.473683e-01	k: 9429	n:10000
Cons ci ratio: 7.258412e-02	ci left: 2.175373e-01	ci right 2.340227e-01	k: 2257	n:10000
KS ci ratio: 5.066151e-02	ci left: 3.649021e-01	ci right 3.839711e-01	k: 3744	n:10000
POTEE   10000 perm   2 sec   (5554 perm/sec)   p_kst 3.744000e-01   p_cons 2.257000e-01   p_joint 9.429000e-01

Outputting figure to mutsig2_images.part000000000135/POTEE.2_3288_10000_0.3744_0.2257_0.9429.png
                gene_name: POTEE
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000135
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 135 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 9877966: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000136> was used as the working directory.
Started at Fri Oct  5 22:52:19 2012
Results reported at Fri Oct  5 22:53:16 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000136.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000136.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 136  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000136.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     52.63 sec.
    Max Memory :       883 MB
    Max Swap   :      3702 MB

    Max Processes  :         7
    Max Threads    :        67

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
136
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 136
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 136: processing genes 12241 - 12331
Calculating significance of each gene.
Using projection method.
12241	PPM1E	1
12242	PPM1F	1
12243	PPM1G	1
12244	PPM1H	1
12245	PPM1J	1
12246	PPM1K	1
12247	PPM1L	1
12248	PPM1M	1
12249	PPM1N	1
12250	PPME1	1
12251	PPOX	1
12252	PPP1CA	1
12253	PPP1CB	1
12254	PPP1CC	1
12255	PPP1R10	1
12256	PPP1R11	1
12257	PPP1R12A	1
12258	PPP1R12B	1
12259	PPP1R12C	1
12260	PPP1R13B	1.078489e-01
12261	PPP1R13L	1
12262	PPP1R14A	1
12263	PPP1R14B	1
12264	PPP1R14C	1
12265	PPP1R14D	1
12266	PPP1R15A	1
12267	PPP1R15B	1
12268	PPP1R16A	1
12269	PPP1R16B	1
12270	PPP1R1A	1
12271	PPP1R1B	1
12272	PPP1R1C	1
12273	PPP1R2	1
In gene PPP1R3A the following bins exceed PROBCAP:
    PRAD-CH-5789	categ 6	N = 3385    n = 1	mu =   1.98e-07
12274	PPP1R3A	9.679194e-02
12275	PPP1R3B	8.311335e-02
12276	PPP1R3C	1
12277	PPP1R3D	1
12278	PPP1R3F	1
12279	PPP1R7	1
12280	PPP1R8	1
12281	PPP1R9A	1
12282	PPP1R9B	1
12283	PPP2CA	1
12284	PPP2CB	1
12285	PPP2R1A	1
12286	PPP2R1B	1
12287	PPP2R2A	1
12288	PPP2R2B	6.611062e-03
12289	PPP2R2C	1.284629e-01
12290	PPP2R2D	1
12291	PPP2R3A	2.670532e-01
12292	PPP2R3B	1
12293	PPP2R3C	1
12294	PPP2R4	1
12295	PPP2R5A	1
12296	PPP2R5B	1
12297	PPP2R5C	1
12298	PPP2R5D	1
12299	PPP2R5E	9.977363e-02
12300	PPP3CA	1
12301	PPP3CB	1
12302	PPP3CC	1
12303	PPP3R1	1
12304	PPP3R2	1
12305	PPP4C	1
12306	PPP4R1	1.132178e-01
12307	PPP4R2	1
12308	PPP4R4	1
12309	PPP5C	3.543689e-02
12310	PPP6C	1
12311	PPPDE1	1
12312	PPPDE2	1
12313	PPRC1	1
12314	PPT1	1
12315	PPT2	1
12316	PPTC7	1
12317	PPWD1	1
12318	PPY	1
12319	PPYR1	1
12320	PQBP1	1
12321	PQLC1	1
12322	PQLC2	1
12323	PQLC3	1
12324	PRAC	1
12325	PRAF2	1
12326	PRAM1	1.850658e-01
12327	PRAME	9.322686e-02
12328	PRAMEF1	1.119084e-01
12329	PRAMEF10	1
12330	PRAMEF11	1
12331	PRAMEF12	1
Done

Running MutSig 2:
Scatter job 136: processing genes 12241 - 12331
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PPP2R2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.665473e-02	ci left: 6.745838e-01	ci right 6.929091e-01	k: 6838	n:10000
KS ci ratio: 3.725154e-02	ci left: 5.155566e-01	ci right 5.352286e-01	k: 5254	n:10000
PPP2R2B   10000 perm   1 sec   (7247 perm/sec)   p_kst 5.254000e-01   p_cons 6.838000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000136/PPP2R2B.2_1506_10000_0.5254_0.6838_1.png
                gene_name: PPP2R2B
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000136
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 136 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1532>
Subject: Job 9877970: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1532>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000137> was used as the working directory.
Started at Fri Oct  5 22:52:46 2012
Results reported at Fri Oct  5 22:56:31 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000137.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000137.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 137  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000137.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    191.80 sec.
    Max Memory :      2369 MB
    Max Swap   :      4676 MB

    Max Processes  :         7
    Max Threads    :        60

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
137
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 137
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 137: processing genes 12332 - 12422
Calculating significance of each gene.
Using projection method.
12332	PRAMEF13	1
12333	PRAMEF14	1
12334	PRAMEF16	1
12335	PRAMEF17	1
12336	PRAMEF18	1
12337	PRAMEF19	1
12338	PRAMEF2	1.130163e-02
12339	PRAMEF4	1.329101e-01
12340	PRAP1	1
12341	PRB1	7.022895e-05
12342	PRB2	1
12343	PRB3	1
12344	PRB4	1
12345	PRC1	1
12346	PRCC	1
12347	PRCD	1
12348	PRCP	1
12349	PRDM1	1
12350	PRDM10	1
12351	PRDM11	1
12352	PRDM12	1
12353	PRDM13	1
12354	PRDM14	1
12355	PRDM15	1
12356	PRDM16	1
12357	PRDM2	3.974568e-01
12358	PRDM4	1
12359	PRDM5	1.502978e-01
12360	PRDM7	1
12361	PRDM8	1
12362	PRDM9	2.714728e-02
12363	PRDX1	1
12364	PRDX2	1
12365	PRDX3	1
12366	PRDX4	1
12367	PRDX5	1
12368	PRDX6	1
12369	PREB	1
12370	PRELID1	1
12371	PRELID2	1
12372	PRELP	1
12373	PREP	1
12374	PREPL	1
12375	PREX1	1
12376	PREX2	9.393920e-02
12377	PRF1	1
12378	PRG2	1
12379	PRG3	3.807359e-02
12380	PRG4	1.073924e-03
12381	PRH1	1
12382	PRH2	1
12383	PRHOXNB	1
12384	PRIC285	1
12385	PRICKLE1	1
12386	PRICKLE2	5.208327e-02
12387	PRICKLE3	1
12388	PRICKLE4	1
12389	PRIM1	1
In gene PRIM2 the following bins exceed PROBCAP:
    PRAD-CH-5788	categ 6	N = 1412    n = 1	mu =   2.66e-07
12390	PRIM2	7.660032e-05
12391	PRIMA1	1
12392	PRKAA1	1
12393	PRKAA2	1.251220e-01
12394	PRKAB1	1
12395	PRKAB2	1
12396	PRKACA	1
12397	PRKACB	1
12398	PRKACG	1
12399	PRKAG1	1
12400	PRKAG2	1
12401	PRKAG3	5.841834e-02
12402	PRKAR1A	1
12403	PRKAR1B	1
12404	PRKAR2A	1
12405	PRKAR2B	1
12406	PRKCA	1
12407	PRKCB	1.852682e-01
12408	PRKCD	1
12409	PRKCDBP	1
12410	PRKCE	1
12411	PRKCG	1
12412	PRKCH	1
12413	PRKCI	1
12414	PRKCQ	1
12415	PRKCSH	2.499273e-02
12416	PRKCZ	1
12417	PRKD1	1
12418	PRKD2	1.860745e-01
12419	PRKD3	1
12420	PRKDC	1.345456e-01
12421	PRKG1	1
12422	PRKG2	1
Done

Running MutSig 2:
Scatter job 137: processing genes 12332 - 12422
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PRG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.064023e-01	ci left: 1.131062e-01	ci right 1.259164e-01	k: 1194	n:10000
Cons ci ratio: 1.176235e-03	ci left: 9.984243e-01	ci right 9.996546e-01	k: 9992	n:10000
KS ci ratio: 2.264156e-01	ci left: 2.579881e-02	ci right 3.247924e-02	k: 290	n:10000
PRG4   10000 perm   3 sec   (3592 perm/sec)   p_kst 2.900000e-02   p_cons 9.992000e-01   p_joint 1.194000e-01

Joint ci ratio: 7.002759e-02	ci left: 1.306864e-01	ci right 1.402199e-01	k: 2708	n:20000
Cons ci ratio: 9.804905e-04	ci left: 9.982150e-01	ci right 9.992310e-01	k: 19976	n:20000
KS ci ratio: 1.574756e-01	ci left: 2.767935e-02	ci right 3.245857e-02	k: 600	n:20000
PRG4   20000 perm   11 sec   (1779 perm/sec)   p_kst 3.000000e-02   p_cons 9.988000e-01   p_joint 1.354000e-01

Joint ci ratio: 6.138428e-02	ci left: 1.159813e-01	ci right 1.233592e-01	k: 3589	n:30000
Cons ci ratio: 8.771237e-04	ci left: 9.980316e-01	ci right 9.989341e-01	k: 29956	n:30000
KS ci ratio: 1.276696e-01	ci left: 2.851845e-02	ci right 3.243985e-02	k: 913	n:30000
PRG4   30000 perm   14 sec   (2152 perm/sec)   p_kst 3.043333e-02   p_cons 9.985333e-01   p_joint 1.196333e-01

Joint ci ratio: 5.900452e-02	ci left: 9.643522e-02	ci right 1.023231e-01	k: 3974	n:40000
Cons ci ratio: 7.338329e-04	ci left: 9.982106e-01	ci right 9.989640e-01	k: 39945	n:40000
KS ci ratio: 1.123204e-01	ci left: 2.788788e-02	ci right 3.123088e-02	k: 1181	n:40000
PRG4   40000 perm   17 sec   (2394 perm/sec)   p_kst 2.952500e-02   p_cons 9.986250e-01   p_joint 9.935000e-02

Joint ci ratio: 5.751732e-02	ci left: 8.254994e-02	ci right 8.745836e-02	k: 4249	n:50000
Cons ci ratio: 6.516565e-04	ci left: 9.982762e-01	ci right 9.989438e-01	k: 49932	n:50000
KS ci ratio: 1.006559e-01	ci left: 2.795622e-02	ci right 3.093875e-02	k: 1471	n:50000
PRG4   50000 perm   20 sec   (2557 perm/sec)   p_kst 2.942000e-02   p_cons 9.986400e-01   p_joint 8.498000e-02

Joint ci ratio: 5.293246e-02	ci left: 8.152885e-02	ci right 8.597818e-02	k: 5024	n:60000
Cons ci ratio: 5.956023e-04	ci left: 9.983039e-01	ci right 9.989129e-01	k: 59918	n:60000
KS ci ratio: 9.254666e-02	ci left: 2.768807e-02	ci right 3.039107e-02	k: 1741	n:60000
PRG4   60000 perm   22 sec   (2668 perm/sec)   p_kst 2.901667e-02   p_cons 9.986333e-01   p_joint 8.373333e-02

Outputting figure to mutsig2_images.part000000000137/PRG4.5_4263_60000_0.029017_0.99863_0.083733.png
                gene_name: PRG4
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.030 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.084 
     ci_joint_bounds_left: 0.082 
    ci_joint_bounds_right: 0.086 

Current progress: 14 percent done.
PRIM2
Processing conservation and coverage...
Processing mutations... 
Skipping 3 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 29 percent done.
PRB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.598517e-02	ci left: 6.855679e-01	ci right 7.037185e-01	k: 6947	n:10000
Cons ci ratio: 1.745238e-02	ci left: 8.271707e-01	ci right 8.418339e-01	k: 8346	n:10000
KS ci ratio: 4.194744e-02	ci left: 4.562838e-01	ci right 4.759360e-01	k: 4661	n:10000
PRB1   10000 perm   2 sec   (5749 perm/sec)   p_kst 4.661000e-01   p_cons 8.346000e-01   p_joint 6.947000e-01

Outputting figure to mutsig2_images.part000000000137/PRB1.3_1008_10000_0.4661_0.8346_0.6947.png
                gene_name: PRB1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 43 percent done.
PRDM9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.744543e-02	ci left: 3.959551e-01	ci right 4.152999e-01	k: 4056	n:10000
Cons ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
KS ci ratio: 9.723386e-02	ci left: 1.329609e-01	ci right 1.466496e-01	k: 1397	n:10000
PRDM9   10000 perm   2 sec   (4511 perm/sec)   p_kst 1.397000e-01   p_cons 1   p_joint 4.056000e-01

Outputting figure to mutsig2_images.part000000000137/PRDM9.3_2725_10000_0.1397_1_0.4056.png
                gene_name: PRDM9
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 1 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 57 percent done.
PRKDC
Processing conservation and coverage...
78% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.916568e-02	ci left: 1.890467e-01	ci right 2.047302e-01	k: 1968	n:10000
Cons ci ratio: 3.197654e-02	ci left: 5.907217e-01	ci right 6.100198e-01	k: 6004	n:10000
KS ci ratio: 9.276662e-02	ci left: 1.444270e-01	ci right 1.585767e-01	k: 1514	n:10000
PRKDC   10000 perm   4 sec   (2550 perm/sec)   p_kst 1.514000e-01   p_cons 6.004000e-01   p_joint 1.968000e-01

Outputting figure to mutsig2_images.part000000000137/PRKDC.3_12730_10000_0.1514_0.6004_0.1968.png
                gene_name: PRKDC
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 71 percent done.
PRAMEF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.385874e-03	ci left: 9.620496e-01	ci right 9.692759e-01	k: 9658	n:10000
Cons ci ratio: 2.209473e-02	ci left: 7.503916e-01	ci right 7.672574e-01	k: 7589	n:10000
KS ci ratio: 1.646289e-02	ci left: 8.429516e-01	ci right 8.570439e-01	k: 8501	n:10000
PRAMEF2   10000 perm   2 sec   (5690 perm/sec)   p_kst 8.501000e-01   p_cons 7.589000e-01   p_joint 9.658000e-01

Outputting figure to mutsig2_images.part000000000137/PRAMEF2.2_1437_10000_0.8501_0.7589_0.9658.png
                gene_name: PRAMEF2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 86 percent done.
PREX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.499009e-02	ci left: 5.466977e-01	ci right 5.662694e-01	k: 5565	n:10000
KS ci ratio: 4.191375e-02	ci left: 4.566832e-01	ci right 4.763364e-01	k: 4665	n:10000
PREX2   10000 perm   3 sec   (3750 perm/sec)   p_kst 4.665000e-01   p_cons 5.565000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000137/PREX2.2_5210_10000_0.4665_0.5565_1.png
                gene_name: PREX2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000137
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 137 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1711>
Subject: Job 9877973: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1711>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000138> was used as the working directory.
Started at Fri Oct  5 22:52:46 2012
Results reported at Fri Oct  5 22:54:31 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000138.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000138.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 138  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000138.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    121.32 sec.
    Max Memory :      2028 MB
    Max Swap   :      4652 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
138
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 138
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 138: processing genes 12423 - 12512
Calculating significance of each gene.
Using projection method.
12423	PRKRA	1
12424	PRKRIP1	1
12425	PRKRIR	1
12426	PRKX	1
12427	PRL	1
12428	PRLH	1
12429	PRLHR	1
12430	PRLR	1
12431	PRM1	1
12432	PRM2	1
12433	PRM3	8.032330e-03
12434	PRMT1	1
12435	PRMT10	1
12436	PRMT2	1
12437	PRMT3	1
12438	PRMT5	1
12439	PRMT6	1
12440	PRMT7	1
12441	PRMT8	1
12442	PRND	1
12443	PRNP	1
12444	PROC	1
12445	PROCA1	1
12446	PROCR	7.845460e-02
12447	PRODH	1
12448	PRODH2	4.073410e-02
12449	PROK1	1
12450	PROK2	1
12451	PROKR1	1.216816e-02
12452	PROKR2	1
12453	PROL1	1
12454	PROM1	1
12455	PROM2	2.063711e-01
12456	PROP1	1
12457	PROS1	1
12458	PROSC	1
12459	PROX1	1
12460	PROX2	1
12461	PROZ	9.139932e-03
12462	PRPF18	1
12463	PRPF19	1
12464	PRPF3	1
12465	PRPF31	1
12466	PRPF38A	1
12467	PRPF38B	1.689692e-01
12468	PRPF39	1
12469	PRPF4	1
12470	PRPF40A	1
12471	PRPF40B	1
12472	PRPF4B	1
12473	PRPF6	1
12474	PRPF8	5.003809e-01
12475	PRPH	1
12476	PRPH2	1.192725e-01
12477	PRPS1	1
12478	PRPS1L1	6.366391e-02
12479	PRPS2	1
12480	PRPSAP1	1
12481	PRPSAP2	1
12482	PRR11	1
12483	PRR12	1
12484	PRR13	1
12485	PRR14	1
12486	PRR15	1
12487	PRR15L	1
12488	PRR16	1
12489	PRR19	1
12490	PRR21	3.198645e-06
12491	PRR22	1
12492	PRR23A	1
12493	PRR23B	1
12494	PRR23C	1
12495	PRR25	1
12496	PRR3	1
12497	PRR4	1
12498	PRR5	1
12499	PRR5-ARHGAP8	1
12500	PRR5L	1
12501	PRR7	1
12502	PRRC1	1
12503	PRRG1	3.990520e-02
12504	PRRG2	1
12505	PRRG3	1
12506	PRRG4	4.699693e-02
12507	PRRT1	1
12508	PRRT2	1
12509	PRRT3	1
12510	PRRX1	6.746077e-02
12511	PRRX2	1
12512	PRSS1	1
Done

Running MutSig 2:
Scatter job 138: processing genes 12423 - 12512
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PRR21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.613224e-02	ci left: 6.831489e-01	ci right 7.013390e-01	k: 6923	n:10000
Cons ci ratio: 1.022202e-02	ci left: 9.314385e-01	ci right 9.411054e-01	k: 9364	n:10000
KS ci ratio: 6.956496e-02	ci left: 2.325450e-01	ci right 2.494061e-01	k: 2409	n:10000
PRR21   10000 perm   2 sec   (5780 perm/sec)   p_kst 2.409000e-01   p_cons 9.364000e-01   p_joint 6.923000e-01

Outputting figure to mutsig2_images.part000000000138/PRR21.4_1173_10000_0.2409_0.9364_0.6923.png
                gene_name: PRR21
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 33 percent done.
PROKR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.355196e-02	ci left: 1.728091e-01	ci right 1.879776e-01	k: 1803	n:10000
Cons ci ratio: 6.716099e-02	ci left: 2.454909e-01	ci right 2.626525e-01	k: 2540	n:10000
KS ci ratio: 1.168182e-01	ci left: 9.525826e-02	ci right 1.071752e-01	k: 1011	n:10000
PROKR1   10000 perm   2 sec   (6518 perm/sec)   p_kst 1.011000e-01   p_cons 2.540000e-01   p_joint 1.803000e-01

Joint ci ratio: 4.488786e-02	ci left: 2.698127e-01	ci right 2.822525e-01	k: 5520	n:20000
Cons ci ratio: 4.757194e-02	ci left: 2.473831e-01	ci right 2.594887e-01	k: 5068	n:20000
KS ci ratio: 8.168708e-02	ci left: 9.901670e-02	ci right 1.074990e-01	k: 2064	n:20000
PROKR1   20000 perm   3 sec   (5741 perm/sec)   p_kst 1.032000e-01   p_cons 2.534000e-01   p_joint 2.760000e-01

Outputting figure to mutsig2_images.part000000000138/PROKR1.2_1188_20000_0.1032_0.2534_0.276.png
                gene_name: PROKR1
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 67 percent done.
PROZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.161190e-02	ci left: 4.602776e-01	ci right 4.799398e-01	k: 4701	n:10000
Cons ci ratio: 4.325118e-02	ci left: 4.411130e-01	ci right 4.607156e-01	k: 4509	n:10000
KS ci ratio: 7.575520e-02	ci left: 2.031366e-01	ci right 2.192320e-01	k: 2111	n:10000
PROZ   10000 perm   2 sec   (6409 perm/sec)   p_kst 2.111000e-01   p_cons 4.509000e-01   p_joint 4.701000e-01

Outputting figure to mutsig2_images.part000000000138/PROZ.2_1235_10000_0.2111_0.4509_0.4701.png
                gene_name: PROZ
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000138
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 138 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1556>
Subject: Job 9877979: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1556>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000139> was used as the working directory.
Started at Fri Oct  5 22:52:46 2012
Results reported at Fri Oct  5 22:54:55 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000139.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000139.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 139  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000139.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    150.08 sec.
    Max Memory :      1898 MB
    Max Swap   :      4640 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
139
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 139
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 139: processing genes 12513 - 12603
Calculating significance of each gene.
Using projection method.
12513	PRSS12	1
12514	PRSS16	1
12515	PRSS2	1
12516	PRSS21	1
12517	PRSS22	1
12518	PRSS23	1
12519	PRSS27	1
12520	PRSS3	5.680109e-02
12521	PRSS33	1
12522	PRSS35	1
12523	PRSS36	1
12524	PRSS37	1
12525	PRSS38	1
12526	PRSS42	1
12527	PRSS45	1
12528	PRSS48	4.446455e-03
12529	PRSS50	5.496451e-03
12530	PRSS53	1
12531	PRSS54	1
12532	PRSS55	7.829639e-02
12533	PRSS8	1
12534	PRSSL1	1
12535	PRTFDC1	1
12536	PRTG	1
12537	PRTN3	1
12538	PRUNE	1
12539	PRUNE2	1
12540	PRX	1
12541	PSAP	1
12542	PSAT1	1
12543	PSCA	1
12544	PSD	1
12545	PSD2	1.452497e-01
12546	PSD3	1
12547	PSD4	1
12548	PSEN1	1.498451e-01
12549	PSEN2	1
12550	PSENEN	1
12551	PSG1	1
12552	PSG11	3.182373e-02
12553	PSG2	1
12554	PSG3	1.494136e-03
12555	PSG4	1
12556	PSG5	1
12557	PSG6	7.982997e-02
12558	PSG7	1
12559	PSG8	1.428066e-01
12560	PSG9	1.295017e-01
12561	PSIP1	1
12562	PSKH1	1
12563	PSKH2	1
12564	PSMA1	9.487369e-02
12565	PSMA2	1
12566	PSMA3	1
12567	PSMA4	1
12568	PSMA5	1
12569	PSMA6	1
12570	PSMA7	1
12571	PSMA8	1
12572	PSMB1	1
12573	PSMB10	1
12574	PSMB11	1
12575	PSMB2	1
12576	PSMB3	1
12577	PSMB4	1
12578	PSMB5	1
12579	PSMB6	1
12580	PSMB7	1
12581	PSMB8	1
12582	PSMB9	1
12583	PSMC1	1
12584	PSMC2	1
12585	PSMC3	1
12586	PSMC3IP	1
12587	PSMC4	1
12588	PSMC5	1
12589	PSMC6	1
12590	PSMD1	1
12591	PSMD10	1
12592	PSMD11	1
12593	PSMD12	1
12594	PSMD13	1
12595	PSMD14	1
12596	PSMD2	2.753797e-01
12597	PSMD3	1
12598	PSMD4	1
12599	PSMD5	1
12600	PSMD6	6.127173e-02
12601	PSMD7	1
12602	PSMD8	1
12603	PSMD9	1
Done

Running MutSig 2:
Scatter job 139: processing genes 12513 - 12603
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PRSS48
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.224974e-03	ci left: 9.430505e-01	ci right 9.518865e-01	k: 9476	n:10000
KS ci ratio: 8.732284e-03	ci left: 9.484598e-01	ci right 9.568740e-01	k: 9528	n:10000
PRSS48   10000 perm   2 sec   (6073 perm/sec)   p_kst 9.528000e-01   p_cons 9.476000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000139/PRSS48.2_1005_10000_0.9528_0.9476_1.png
                gene_name: PRSS48
               theta_stop: 0.0092 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
PRSS50
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.454149e-02	ci left: 7.094718e-01	ci right 7.272009e-01	k: 7184	n:10000
KS ci ratio: 1.780502e-02	ci left: 8.214750e-01	ci right 8.363328e-01	k: 8290	n:10000
PRSS50   10000 perm   2 sec   (6270 perm/sec)   p_kst 8.290000e-01   p_cons 7.184000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000139/PRSS50.2_1182_10000_0.829_0.7184_1.png
                gene_name: PRSS50
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
PSG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.212332e-02	ci left: 5.885136e-01	ci right 6.078292e-01	k: 5982	n:10000
Cons ci ratio: 5.111871e-02	ci left: 3.607251e-01	ci right 3.797506e-01	k: 3702	n:10000
KS ci ratio: 3.245844e-02	ci left: 5.834959e-01	ci right 6.028498e-01	k: 5932	n:10000
PSG3   10000 perm   1 sec   (6815 perm/sec)   p_kst 5.932000e-01   p_cons 3.702000e-01   p_joint 5.982000e-01

Outputting figure to mutsig2_images.part000000000139/PSG3.2_1311_10000_0.5932_0.3702_0.5982.png
                gene_name: PSG3
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000139
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 139 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1707>
Subject: Job 9877990: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1707>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000140> was used as the working directory.
Started at Fri Oct  5 22:52:46 2012
Results reported at Sat Oct  6 00:45:58 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000140.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000140.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 140  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000140.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   6885.63 sec.
    Max Memory :      2175 MB
    Max Swap   :      4795 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
140
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 140
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 140: processing genes 12604 - 12694
Calculating significance of each gene.
Using projection method.
12604	PSME1	1
12605	PSME2	1
12606	PSME3	1
12607	PSME4	1
12608	PSMF1	1
12609	PSMG1	1
12610	PSMG2	1
12611	PSMG3	1
12612	PSORS1C1	1
12613	PSORS1C2	1
12614	PSPC1	8.317665e-02
12615	PSPH	1
12616	PSPN	1
12617	PSRC1	5.344495e-03
12618	PSTK	1
12619	PSTPIP1	1
12620	PSTPIP2	1
12621	PTAFR	1
12622	PTAR1	1
12623	PTBP1	1
12624	PTBP2	1
12625	PTCD1	1
12626	PTCD2	1
12627	PTCD3	8.472401e-02
12628	PTCH1	1
12629	PTCH2	1
12630	PTCHD1	1
12631	PTCHD2	1
12632	PTCHD3	1
12633	PTCRA	1
12634	PTDSS1	1.478483e-01
12635	PTDSS2	1
12636	PTEN	2.385788e-04
12637	PTER	1
12638	PTF1A	1
12639	PTGDR	1
12640	PTGDS	1
12641	PTGER2	3.166877e-02
12642	PTGER3	1
12643	PTGER4	1
12644	PTGES	1
12645	PTGES2	1
12646	PTGES3	1
12647	PTGFR	1
12648	PTGFRN	2.360902e-01
12649	PTGIR	1
12650	PTGIS	1
12651	PTGR1	1
12652	PTGR2	1
12653	PTGS1	1
12654	PTGS2	1
12655	PTH	1
12656	PTH1R	1
12657	PTH2	1
12658	PTH2R	3.359465e-02
12659	PTHLH	1
12660	PTK2	1
12661	PTK2B	1
12662	PTK6	1
12663	PTK7	2.319578e-02
12664	PTMA	1
12665	PTMS	1
12666	PTN	1
12667	PTOV1	1
12668	PTP4A1	1
12669	PTP4A2	1
12670	PTP4A3	1
12671	PTPDC1	1
12672	PTPLA	1
12673	PTPLAD1	1
12674	PTPLAD2	1
12675	PTPLB	1
12676	PTPMT1	1
12677	PTPN1	1
12678	PTPN11	1
12679	PTPN12	1
12680	PTPN13	4.514302e-01
12681	PTPN14	1.198400e-01
12682	PTPN18	1
12683	PTPN2	1
12684	PTPN21	4.113386e-02
12685	PTPN22	1
12686	PTPN23	1
12687	PTPN3	1
12688	PTPN4	1
12689	PTPN5	1
12690	PTPN6	1
12691	PTPN7	1
12692	PTPN9	1
12693	PTPRA	1
In gene PTPRB the following bins exceed PROBCAP:
    PRAD-EJ-5510	categ 6	N = 6648    n = 1	mu =   1.34e-07
12694	PTPRB	2.072540e-01
Done

Running MutSig 2:
Scatter job 140: processing genes 12604 - 12694
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PTEN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.166204e-02	ci left: 4.596785e-01	ci right 4.793393e-01	k: 4695	n:10000
Cons ci ratio: 1.083685e-01	ci left: 1.093957e-01	ci right 1.220291e-01	k: 1156	n:10000
KS ci ratio: 2.102486e-02	ci left: 7.683064e-01	ci right 7.847323e-01	k: 7766	n:10000
PTEN   10000 perm   2 sec   (5847 perm/sec)   p_kst 7.766000e-01   p_cons 1.156000e-01   p_joint 4.695000e-01

Joint ci ratio: 2.963396e-02	ci left: 4.596662e-01	ci right 4.735435e-01	k: 9332	n:20000
Cons ci ratio: 7.713935e-02	ci left: 1.099217e-01	ci right 1.187908e-01	k: 2286	n:20000
KS ci ratio: 1.496738e-02	ci left: 7.683912e-01	ci right 7.800289e-01	k: 15485	n:20000
PTEN   20000 perm   6 sec   (3342 perm/sec)   p_kst 7.742500e-01   p_cons 1.143000e-01   p_joint 4.666000e-01

Outputting figure to mutsig2_images.part000000000140/PTEN.3_1248_20000_0.77425_0.1143_0.4666.png
                gene_name: PTEN
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.47 

Current progress: 25 percent done.
PSRC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.012206e-02	ci left: 4.784575e-01	ci right 4.981493e-01	k: 4883	n:10000
Cons ci ratio: 9.930804e-02	ci left: 1.280657e-01	ci right 1.415478e-01	k: 1347	n:10000
KS ci ratio: 2.977477e-02	ci left: 6.245712e-01	ci right 6.435506e-01	k: 6341	n:10000
PSRC1   10000 perm   2 sec   (4015 perm/sec)   p_kst 6.341000e-01   p_cons 1.347000e-01   p_joint 4.883000e-01

Outputting figure to mutsig2_images.part000000000140/PSRC1.2_1091_10000_0.6341_0.1347_0.4883.png
                gene_name: PSRC1
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 50 percent done.
PTK7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.086451e+00	ci left: 6.202064e-04	ci right 2.095219e-03	k: 12	n:10000
Cons ci ratio: 4.747495e-02	ci left: 3.956563e-01	ci right 4.149989e-01	k: 4053	n:10000
KS ci ratio: 2.262761e+00	ci left: 2.422185e-05	ci right 7.222801e-04	k: 2	n:10000
PTK7   10000 perm   2 sec   (5681 perm/sec)   p_kst 2.000000e-04   p_cons 4.053000e-01   p_joint 1.200000e-03

Joint ci ratio: 1.131239e+00	ci left: 2.745890e-04	ci right 9.838883e-04	k: 11	n:20000
Cons ci ratio: 3.546624e-02	ci left: 3.724189e-01	ci right 3.859162e-01	k: 7583	n:20000
KS ci ratio: 1.752814e+00	ci left: 5.449587e-05	ci right 5.119995e-04	k: 4	n:20000
PTK7   20000 perm   4 sec   (5101 perm/sec)   p_kst 2.000000e-04   p_cons 3.791500e-01   p_joint 5.500000e-04

Joint ci ratio: 1.239386e+00	ci left: 1.371880e-04	ci right 5.694167e-04	k: 9	n:30000
Cons ci ratio: 2.879469e-02	ci left: 3.763307e-01	ci right 3.873589e-01	k: 11455	n:30000
KS ci ratio: 1.481423e+00	ci left: 7.339990e-05	ci right 4.352646e-04	k: 6	n:30000
PTK7   30000 perm   6 sec   (4874 perm/sec)   p_kst 2.000000e-04   p_cons 3.818333e-01   p_joint 3.000000e-04

Joint ci ratio: 1.481473e+00	ci left: 5.504928e-05	ci right 3.264580e-04	k: 6	n:40000
Cons ci ratio: 2.501721e-02	ci left: 3.755638e-01	ci right 3.851035e-01	k: 15213	n:40000
KS ci ratio: 1.181747e+00	ci left: 1.198910e-04	ci right 4.597107e-04	k: 10	n:40000
PTK7   40000 perm   8 sec   (4726 perm/sec)   p_kst 2.500000e-04   p_cons 3.803250e-01   p_joint 1.500000e-04

Joint ci ratio: 1.131459e+00	ci left: 1.098282e-04	ci right 3.936066e-04	k: 11	n:50000
Cons ci ratio: 2.233860e-02	ci left: 3.768601e-01	ci right 3.853937e-01	k: 19056	n:50000
KS ci ratio: 9.505685e-01	ci left: 1.829184e-04	ci right 5.196081e-04	k: 16	n:50000
PTK7   50000 perm   11 sec   (4555 perm/sec)   p_kst 3.200000e-04   p_cons 3.811200e-01   p_joint 2.200000e-04

Joint ci ratio: 9.505970e-01	ci left: 1.524305e-04	ci right 4.330139e-04	k: 16	n:60000
Cons ci ratio: 2.042789e-02	ci left: 3.764131e-01	ci right 3.841985e-01	k: 22818	n:60000
KS ci ratio: 7.999999e-01	ci left: 2.430155e-04	ci right 5.751330e-04	k: 23	n:60000
PTK7   60000 perm   13 sec   (4450 perm/sec)   p_kst 3.833333e-04   p_cons 3.803000e-01   p_joint 2.666667e-04

Joint ci ratio: 7.542535e-01	ci left: 2.426434e-04	ci right 5.441819e-04	k: 26	n:70000
Cons ci ratio: 1.893559e-02	ci left: 3.761312e-01	ci right 3.833359e-01	k: 26581	n:70000
KS ci ratio: 7.542535e-01	ci left: 2.426434e-04	ci right 5.441819e-04	k: 26	n:70000
PTK7   70000 perm   16 sec   (4267 perm/sec)   p_kst 3.714286e-04   p_cons 3.797286e-01   p_joint 3.714286e-04

Joint ci ratio: 7.155521e-01	ci left: 2.427850e-04	ci right 5.205693e-04	k: 29	n:80000
Cons ci ratio: 1.770014e-02	ci left: 3.766970e-01	ci right 3.834367e-01	k: 30405	n:80000
KS ci ratio: 7.155521e-01	ci left: 2.427850e-04	ci right 5.205693e-04	k: 29	n:80000
PTK7   80000 perm   21 sec   (3796 perm/sec)   p_kst 3.625000e-04   p_cons 3.800625e-01   p_joint 3.625000e-04

Joint ci ratio: 6.357702e-01	ci left: 2.894762e-04	ci right 5.666184e-04	k: 37	n:90000
Cons ci ratio: 1.672993e-02	ci left: 3.757069e-01	ci right 3.820565e-01	k: 34099	n:90000
KS ci ratio: 6.357702e-01	ci left: 2.894762e-04	ci right 5.666184e-04	k: 37	n:90000
PTK7   90000 perm   26 sec   (3459 perm/sec)   p_kst 4.111111e-04   p_cons 3.788778e-01   p_joint 4.111111e-04

Joint ci ratio: 5.976629e-01	ci left: 3.027153e-04	ci right 5.676761e-04	k: 42	n:100000
Cons ci ratio: 1.586900e-02	ci left: 3.759418e-01	ci right 3.819653e-01	k: 37895	n:100000
KS ci ratio: 5.976629e-01	ci left: 3.027153e-04	ci right 5.676761e-04	k: 42	n:100000
PTK7   100000 perm   31 sec   (3248 perm/sec)   p_kst 4.200000e-04   p_cons 3.789500e-01   p_joint 4.200000e-04

Joint ci ratio: 5.656772e-01	ci left: 3.139603e-04	ci right 5.681421e-04	k: 47	n:110000
Cons ci ratio: 1.512746e-02	ci left: 3.761771e-01	ci right 3.819202e-01	k: 41695	n:110000
KS ci ratio: 5.656772e-01	ci left: 3.139603e-04	ci right 5.681421e-04	k: 47	n:110000
PTK7   110000 perm   35 sec   (3177 perm/sec)   p_kst 4.272727e-04   p_cons 3.790455e-01   p_joint 4.272727e-04

Joint ci ratio: 5.487909e-01	ci left: 3.092734e-04	ci right 5.492866e-04	k: 50	n:120000
Cons ci ratio: 1.446207e-02	ci left: 3.769945e-01	ci right 3.824946e-01	k: 45569	n:120000
KS ci ratio: 5.487909e-01	ci left: 3.092734e-04	ci right 5.492866e-04	k: 50	n:120000
PTK7   120000 perm   38 sec   (3154 perm/sec)   p_kst 4.166667e-04   p_cons 3.797417e-01   p_joint 4.166667e-04

Joint ci ratio: 5.383416e-01	ci left: 2.987531e-04	ci right 5.245141e-04	k: 52	n:130000
Cons ci ratio: 1.388212e-02	ci left: 3.775293e-01	ci right 3.828145e-01	k: 49422	n:130000
KS ci ratio: 5.383416e-01	ci left: 2.987531e-04	ci right 5.245141e-04	k: 52	n:130000
PTK7   130000 perm   41 sec   (3163 perm/sec)   p_kst 4.000000e-04   p_cons 3.801692e-01   p_joint 4.000000e-04

Joint ci ratio: 5.237254e-01	ci left: 2.959670e-04	ci right 5.113273e-04	k: 55	n:140000
Cons ci ratio: 1.337649e-02	ci left: 3.776490e-01	ci right 3.827417e-01	k: 53227	n:140000
KS ci ratio: 5.237254e-01	ci left: 2.959670e-04	ci right 5.113273e-04	k: 55	n:140000
PTK7   140000 perm   44 sec   (3170 perm/sec)   p_kst 3.928571e-04   p_cons 3.801929e-01   p_joint 3.928571e-04

Joint ci ratio: 5.059669e-01	ci left: 2.994366e-04	ci right 5.073424e-04	k: 59	n:150000
Cons ci ratio: 1.292164e-02	ci left: 3.777824e-01	ci right 3.827023e-01	k: 57036	n:150000
KS ci ratio: 5.059669e-01	ci left: 2.994366e-04	ci right 5.073424e-04	k: 59	n:150000
PTK7   150000 perm   47 sec   (3171 perm/sec)   p_kst 3.933333e-04   p_cons 3.802400e-01   p_joint 3.933333e-04

Joint ci ratio: 4.788024e-01	ci left: 3.190414e-04	ci right 5.247717e-04	k: 66	n:160000
Cons ci ratio: 1.250576e-02	ci left: 3.780702e-01	ci right 3.828342e-01	k: 60872	n:160000
KS ci ratio: 4.788024e-01	ci left: 3.190414e-04	ci right 5.247717e-04	k: 66	n:160000
PTK7   160000 perm   50 sec   (3169 perm/sec)   p_kst 4.125000e-04   p_cons 3.804500e-01   p_joint 4.125000e-04

Joint ci ratio: 4.587014e-01	ci left: 3.314000e-04	ci right 5.333359e-04	k: 72	n:170000
Cons ci ratio: 1.212685e-02	ci left: 3.783557e-01	ci right 3.829778e-01	k: 64713	n:170000
KS ci ratio: 4.587014e-01	ci left: 3.314000e-04	ci right 5.333359e-04	k: 72	n:170000
PTK7   170000 perm   54 sec   (3143 perm/sec)   p_kst 4.235294e-04   p_cons 3.806647e-01   p_joint 4.235294e-04

Joint ci ratio: 4.354563e-01	ci left: 3.524320e-04	ci right 5.531195e-04	k: 80	n:180000
Cons ci ratio: 1.177917e-02	ci left: 3.786614e-01	ci right 3.831536e-01	k: 68563	n:180000
KS ci ratio: 4.354563e-01	ci left: 3.524320e-04	ci right 5.531195e-04	k: 80	n:180000
PTK7   180000 perm   58 sec   (3118 perm/sec)   p_kst 4.444444e-04   p_cons 3.809056e-01   p_joint 4.444444e-04

Joint ci ratio: 4.154207e-01	ci left: 3.714822e-04	ci right 5.705928e-04	k: 88	n:190000
Cons ci ratio: 1.146067e-02	ci left: 3.788997e-01	ci right 3.832724e-01	k: 72406	n:190000
KS ci ratio: 4.154207e-01	ci left: 3.714822e-04	ci right 5.705928e-04	k: 88	n:190000
PTK7   190000 perm   61 sec   (3099 perm/sec)   p_kst 4.631579e-04   p_cons 3.810842e-01   p_joint 4.631579e-04

Joint ci ratio: 4.063895e-01	ci left: 3.708405e-04	ci right 5.641198e-04	k: 92	n:200000
Cons ci ratio: 1.117094e-02	ci left: 3.789358e-01	ci right 3.831976e-01	k: 76213	n:200000
KS ci ratio: 4.063895e-01	ci left: 3.708405e-04	ci right 5.641198e-04	k: 92	n:200000
PTK7   200000 perm   65 sec   (3083 perm/sec)   p_kst 4.600000e-04   p_cons 3.810650e-01   p_joint 4.600000e-04

Joint ci ratio: 3.999909e-01	ci left: 3.660181e-04	ci right 5.529844e-04	k: 95	n:210000
Cons ci ratio: 1.090411e-02	ci left: 3.788842e-01	ci right 3.830429e-01	k: 80002	n:210000
KS ci ratio: 3.999909e-01	ci left: 3.660181e-04	ci right 5.529844e-04	k: 95	n:210000
PTK7   210000 perm   68 sec   (3066 perm/sec)   p_kst 4.523810e-04   p_cons 3.809619e-01   p_joint 4.523810e-04

Joint ci ratio: 3.861578e-01	ci left: 3.780554e-04	ci right 5.627950e-04	k: 102	n:220000
Cons ci ratio: 1.065543e-02	ci left: 3.788429e-01	ci right 3.829057e-01	k: 83792	n:220000
KS ci ratio: 3.861578e-01	ci left: 3.780554e-04	ci right 5.627950e-04	k: 102	n:220000
PTK7   220000 perm   72 sec   (3039 perm/sec)   p_kst 4.636364e-04   p_cons 3.808727e-01   p_joint 4.636364e-04

Joint ci ratio: 3.771128e-01	ci left: 3.812721e-04	ci right 5.621403e-04	k: 107	n:230000
Cons ci ratio: 1.043071e-02	ci left: 3.784587e-01	ci right 3.824313e-01	k: 87502	n:230000
KS ci ratio: 3.771128e-01	ci left: 3.812721e-04	ci right 5.621403e-04	k: 107	n:230000
PTK7   230000 perm   76 sec   (3021 perm/sec)   p_kst 4.652174e-04   p_cons 3.804435e-01   p_joint 4.652174e-04

Joint ci ratio: 3.703180e-01	ci left: 3.804870e-04	ci right 5.569430e-04	k: 111	n:240000
Cons ci ratio: 1.021556e-02	ci left: 3.782947e-01	ci right 3.821832e-01	k: 91257	n:240000
KS ci ratio: 3.703180e-01	ci left: 3.804870e-04	ci right 5.569430e-04	k: 111	n:240000
PTK7   240000 perm   80 sec   (3003 perm/sec)   p_kst 4.625000e-04   p_cons 3.802375e-01   p_joint 4.625000e-04

Joint ci ratio: 3.592596e-01	ci left: 3.907020e-04	ci right 5.652197e-04	k: 118	n:250000
Cons ci ratio: 1.001259e-02	ci left: 3.781726e-01	ci right 3.819821e-01	k: 95019	n:250000
KS ci ratio: 3.592596e-01	ci left: 3.907020e-04	ci right 5.652197e-04	k: 118	n:250000
PTK7   250000 perm   84 sec   (2983 perm/sec)   p_kst 4.720000e-04   p_cons 3.800760e-01   p_joint 4.720000e-04

Joint ci ratio: 3.548162e-01	ci left: 3.861784e-04	ci right 5.560500e-04	k: 121	n:260000
Cons ci ratio: 9.817258e-03	ci left: 3.782528e-01	ci right 3.819883e-01	k: 98831	n:260000
KS ci ratio: 3.548162e-01	ci left: 3.861784e-04	ci right 5.560500e-04	k: 121	n:260000
PTK7   260000 perm   88 sec   (2962 perm/sec)   p_kst 4.653846e-04   p_cons 3.801192e-01   p_joint 4.653846e-04

Joint ci ratio: 3.533733e-01	ci left: 3.752493e-04	ci right 5.394881e-04	k: 122	n:270000
Cons ci ratio: 9.637015e-03	ci left: 3.781279e-01	ci right 3.817932e-01	k: 102589	n:270000
KS ci ratio: 3.533733e-01	ci left: 3.752493e-04	ci right 5.394881e-04	k: 122	n:270000
PTK7   270000 perm   92 sec   (2929 perm/sec)   p_kst 4.518519e-04   p_cons 3.799593e-01   p_joint 4.518519e-04

Joint ci ratio: 3.450566e-01	ci left: 3.813971e-04	ci right 5.435209e-04	k: 128	n:280000
Cons ci ratio: 9.457957e-03	ci left: 3.784300e-01	ci right 3.820297e-01	k: 106464	n:280000
KS ci ratio: 3.450566e-01	ci left: 3.813971e-04	ci right 5.435209e-04	k: 128	n:280000
PTK7   280000 perm   97 sec   (2901 perm/sec)   p_kst 4.571429e-04   p_cons 3.802286e-01   p_joint 4.571429e-04

Joint ci ratio: 3.411140e-01	ci left: 3.776989e-04	ci right 5.360118e-04	k: 131	n:290000
Cons ci ratio: 9.291237e-03	ci left: 3.785740e-01	ci right 3.821112e-01	k: 110299	n:290000
KS ci ratio: 3.411140e-01	ci left: 3.776989e-04	ci right 5.360118e-04	k: 131	n:290000
PTK7   290000 perm   101 sec   (2879 perm/sec)   p_kst 4.517241e-04   p_cons 3.803414e-01   p_joint 4.517241e-04

Joint ci ratio: 3.373034e-01	ci left: 3.742571e-04	ci right 5.289935e-04	k: 134	n:300000
Cons ci ratio: 9.134066e-03	ci left: 3.786556e-01	ci right 3.821334e-01	k: 114118	n:300000
KS ci ratio: 3.373034e-01	ci left: 3.742571e-04	ci right 5.289935e-04	k: 134	n:300000
PTK7   300000 perm   105 sec   (2855 perm/sec)   p_kst 4.466667e-04   p_cons 3.803933e-01   p_joint 4.466667e-04

Joint ci ratio: 3.336177e-01	ci left: 3.710465e-04	ci right 5.224190e-04	k: 137	n:310000
Cons ci ratio: 8.980738e-03	ci left: 3.789355e-01	ci right 3.823571e-01	k: 118000	n:310000
KS ci ratio: 3.336177e-01	ci left: 3.710465e-04	ci right 5.224190e-04	k: 137	n:310000
PTK7   310000 perm   109 sec   (2834 perm/sec)   p_kst 4.419355e-04   p_cons 3.806452e-01   p_joint 4.419355e-04

Joint ci ratio: 3.312275e-01	ci left: 3.651795e-04	ci right 5.128635e-04	k: 139	n:320000
Cons ci ratio: 8.841965e-03	ci left: 3.788205e-01	ci right 3.821879e-01	k: 121761	n:320000
KS ci ratio: 3.312275e-01	ci left: 3.651795e-04	ci right 5.128635e-04	k: 139	n:320000
PTK7   320000 perm   114 sec   (2810 perm/sec)   p_kst 4.343750e-04   p_cons 3.805031e-01   p_joint 4.343750e-04

Joint ci ratio: 3.288878e-01	ci left: 3.596718e-04	ci right 5.038835e-04	k: 141	n:330000
Cons ci ratio: 8.713128e-03	ci left: 3.785130e-01	ci right 3.818285e-01	k: 125456	n:330000
KS ci ratio: 3.288878e-01	ci left: 3.596718e-04	ci right 5.038835e-04	k: 141	n:330000
PTK7   330000 perm   118 sec   (2785 perm/sec)   p_kst 4.272727e-04   p_cons 3.801697e-01   p_joint 4.272727e-04

Joint ci ratio: 3.277374e-01	ci left: 3.517917e-04	ci right 4.922466e-04	k: 142	n:340000
Cons ci ratio: 8.587131e-03	ci left: 3.783680e-01	ci right 3.816340e-01	k: 129200	n:340000
KS ci ratio: 3.277374e-01	ci left: 3.517917e-04	ci right 4.922466e-04	k: 142	n:340000
PTK7   340000 perm   127 sec   (2681 perm/sec)   p_kst 4.176471e-04   p_cons 3.800000e-01   p_joint 4.176471e-04

Joint ci ratio: 3.243534e-01	ci left: 3.496104e-04	ci right 4.874530e-04	k: 145	n:350000
Cons ci ratio: 8.461261e-03	ci left: 3.785200e-01	ci right 3.817392e-01	k: 133045	n:350000
KS ci ratio: 3.243534e-01	ci left: 3.496104e-04	ci right 4.874530e-04	k: 145	n:350000
PTK7   350000 perm   136 sec   (2578 perm/sec)   p_kst 4.142857e-04   p_cons 3.801286e-01   p_joint 4.142857e-04

Joint ci ratio: 3.189377e-01	ci left: 3.526668e-04	ci right 4.889189e-04	k: 150	n:360000
Cons ci ratio: 8.341997e-03	ci left: 3.785944e-01	ci right 3.817686e-01	k: 136865	n:360000
KS ci ratio: 3.189377e-01	ci left: 3.526668e-04	ci right 4.889189e-04	k: 150	n:360000
PTK7   360000 perm   143 sec   (2519 perm/sec)   p_kst 4.166667e-04   p_cons 3.801806e-01   p_joint 4.166667e-04

Joint ci ratio: 3.158164e-01	ci left: 3.505975e-04	ci right 4.844568e-04	k: 153	n:370000
Cons ci ratio: 8.226223e-03	ci left: 3.787462e-01	ci right 3.818773e-01	k: 140715	n:370000
KS ci ratio: 3.158164e-01	ci left: 3.505975e-04	ci right 4.844568e-04	k: 153	n:370000
PTK7   370000 perm   149 sec   (2482 perm/sec)   p_kst 4.135135e-04   p_cons 3.803108e-01   p_joint 4.135135e-04

Joint ci ratio: 3.098376e-01	ci left: 3.559215e-04	ci right 4.887327e-04	k: 159	n:380000
Cons ci ratio: 8.119217e-03	ci left: 3.786535e-01	ci right 3.817430e-01	k: 144475	n:380000
KS ci ratio: 3.098376e-01	ci left: 3.559215e-04	ci right 4.887327e-04	k: 159	n:380000
PTK7   380000 perm   155 sec   (2457 perm/sec)   p_kst 4.184211e-04   p_cons 3.801974e-01   p_joint 4.184211e-04

Joint ci ratio: 3.069735e-01	ci left: 3.538924e-04	ci right 4.844869e-04	k: 162	n:390000
Cons ci ratio: 8.010917e-03	ci left: 3.788811e-01	ci right 3.819310e-01	k: 148358	n:390000
KS ci ratio: 3.069735e-01	ci left: 3.538924e-04	ci right 4.844869e-04	k: 162	n:390000
PTK7   390000 perm   160 sec   (2442 perm/sec)   p_kst 4.153846e-04   p_cons 3.804051e-01   p_joint 4.153846e-04

Joint ci ratio: 3.051083e-01	ci left: 3.496610e-04	ci right 4.777577e-04	k: 164	n:400000
Cons ci ratio: 7.909353e-03	ci left: 3.789476e-01	ci right 3.819592e-01	k: 152181	n:400000
KS ci ratio: 3.051083e-01	ci left: 3.496610e-04	ci right 4.777577e-04	k: 164	n:400000
PTK7   400000 perm   165 sec   (2424 perm/sec)   p_kst 4.100000e-04   p_cons 3.804525e-01   p_joint 4.100000e-04

Joint ci ratio: 3.005876e-01	ci left: 3.524014e-04	ci right 4.792239e-04	k: 169	n:410000
Cons ci ratio: 7.811476e-03	ci left: 3.790159e-01	ci right 3.819906e-01	k: 156006	n:410000
KS ci ratio: 3.005876e-01	ci left: 3.524014e-04	ci right 4.792239e-04	k: 169	n:410000
PTK7   410000 perm   170 sec   (2409 perm/sec)   p_kst 4.121951e-04   p_cons 3.805024e-01   p_joint 4.121951e-04

Joint ci ratio: 2.979703e-01	ci left: 3.506175e-04	ci right 4.754915e-04	k: 172	n:420000
Cons ci ratio: 7.720614e-03	ci left: 3.788695e-01	ci right 3.818083e-01	k: 159742	n:420000
KS ci ratio: 2.979703e-01	ci left: 3.506175e-04	ci right 4.754915e-04	k: 172	n:420000
PTK7   420000 perm   175 sec   (2395 perm/sec)   p_kst 4.095238e-04   p_cons 3.803381e-01   p_joint 4.095238e-04

Joint ci ratio: 2.954203e-01	ci left: 3.489210e-04	ci right 4.719281e-04	k: 175	n:430000
Cons ci ratio: 7.630251e-03	ci left: 3.788905e-01	ci right 3.817949e-01	k: 163547	n:430000
KS ci ratio: 2.954203e-01	ci left: 3.489210e-04	ci right 4.719281e-04	k: 175	n:430000
PTK7   430000 perm   181 sec   (2377 perm/sec)   p_kst 4.069767e-04   p_cons 3.803419e-01   p_joint 4.069767e-04

Joint ci ratio: 2.929346e-01	ci left: 3.473061e-04	ci right 4.685224e-04	k: 178	n:440000
Cons ci ratio: 7.546154e-03	ci left: 3.787131e-01	ci right 3.815840e-01	k: 167265	n:440000
KS ci ratio: 2.929346e-01	ci left: 3.473061e-04	ci right 4.685224e-04	k: 178	n:440000
PTK7   440000 perm   187 sec   (2357 perm/sec)   p_kst 4.045455e-04   p_cons 3.801477e-01   p_joint 4.045455e-04

Joint ci ratio: 2.921208e-01	ci left: 3.416472e-04	ci right 4.604959e-04	k: 179	n:450000
Cons ci ratio: 7.462065e-03	ci left: 3.787147e-01	ci right 3.815535e-01	k: 171060	n:450000
KS ci ratio: 2.921208e-01	ci left: 3.416472e-04	ci right 4.604959e-04	k: 179	n:450000
PTK7   450000 perm   192 sec   (2340 perm/sec)   p_kst 3.977778e-04   p_cons 3.801333e-01   p_joint 3.977778e-04

Joint ci ratio: 2.913137e-01	ci left: 3.362348e-04	ci right 4.528179e-04	k: 180	n:460000
Cons ci ratio: 7.381373e-03	ci left: 3.786752e-01	ci right 3.814828e-01	k: 174836	n:460000
KS ci ratio: 2.913137e-01	ci left: 3.362348e-04	ci right 4.528179e-04	k: 180	n:460000
PTK7   460000 perm   198 sec   (2327 perm/sec)   p_kst 3.913043e-04   p_cons 3.800783e-01   p_joint 3.913043e-04

Joint ci ratio: 2.889294e-01	ci left: 3.349993e-04	ci right 4.500297e-04	k: 183	n:470000
Cons ci ratio: 7.303178e-03	ci left: 3.786418e-01	ci right 3.814193e-01	k: 178614	n:470000
KS ci ratio: 2.889294e-01	ci left: 3.349993e-04	ci right 4.500297e-04	k: 183	n:470000
PTK7   470000 perm   203 sec   (2313 perm/sec)   p_kst 3.893617e-04   p_cons 3.800298e-01   p_joint 3.893617e-04

Joint ci ratio: 2.850816e-01	ci left: 3.376872e-04	ci right 4.518184e-04	k: 188	n:480000
Cons ci ratio: 7.227895e-03	ci left: 3.785787e-01	ci right 3.813270e-01	k: 182377	n:480000
KS ci ratio: 2.850816e-01	ci left: 3.376872e-04	ci right 4.518184e-04	k: 188	n:480000
PTK7   480000 perm   209 sec   (2299 perm/sec)   p_kst 3.916667e-04   p_cons 3.799521e-01   p_joint 3.916667e-04

Joint ci ratio: 2.850828e-01	ci left: 3.307954e-04	ci right 4.425979e-04	k: 188	n:490000
Cons ci ratio: 7.153251e-03	ci left: 3.786264e-01	ci right 3.813465e-01	k: 186193	n:490000
KS ci ratio: 2.850828e-01	ci left: 3.307954e-04	ci right 4.425979e-04	k: 188	n:490000
PTK7   490000 perm   215 sec   (2284 perm/sec)   p_kst 3.836735e-04   p_cons 3.799857e-01   p_joint 3.836735e-04

Joint ci ratio: 2.799448e-01	ci left: 3.371880e-04	ci right 4.487349e-04	k: 195	n:500000
Cons ci ratio: 7.083548e-03	ci left: 3.784944e-01	ci right 3.811870e-01	k: 189920	n:500000
KS ci ratio: 2.799448e-01	ci left: 3.371880e-04	ci right 4.487349e-04	k: 195	n:500000
PTK7   500000 perm   220 sec   (2269 perm/sec)   p_kst 3.900000e-04   p_cons 3.798400e-01   p_joint 3.900000e-04

Joint ci ratio: 2.764407e-01	ci left: 3.396966e-04	ci right 4.504221e-04	k: 200	n:510000
Cons ci ratio: 7.013099e-03	ci left: 3.785520e-01	ci right 3.812180e-01	k: 193741	n:510000
KS ci ratio: 2.764407e-01	ci left: 3.396966e-04	ci right 4.504221e-04	k: 200	n:510000
PTK7   510000 perm   226 sec   (2254 perm/sec)   p_kst 3.921569e-04   p_cons 3.798843e-01   p_joint 3.921569e-04

Joint ci ratio: 2.757564e-01	ci left: 3.349538e-04	ci right 4.438162e-04	k: 201	n:520000
Cons ci ratio: 6.944710e-03	ci left: 3.786074e-01	ci right 3.812478e-01	k: 197562	n:520000
KS ci ratio: 2.757564e-01	ci left: 3.349538e-04	ci right 4.438162e-04	k: 201	n:520000
PTK7   520000 perm   232 sec   (2239 perm/sec)   p_kst 3.865385e-04   p_cons 3.799269e-01   p_joint 3.865385e-04

Joint ci ratio: 2.724054e-01	ci left: 3.374197e-04	ci right 4.455229e-04	k: 206	n:530000
Cons ci ratio: 6.879303e-03	ci left: 3.785911e-01	ci right 3.812064e-01	k: 201346	n:530000
KS ci ratio: 2.724054e-01	ci left: 3.374197e-04	ci right 4.455229e-04	k: 206	n:530000
PTK7   530000 perm   239 sec   (2221 perm/sec)   p_kst 3.886792e-04   p_cons 3.798981e-01   p_joint 3.886792e-04

Joint ci ratio: 2.698110e-01	ci left: 3.380751e-04	ci right 4.451821e-04	k: 210	n:540000
Cons ci ratio: 6.814397e-03	ci left: 3.786662e-01	ci right 3.812573e-01	k: 205179	n:540000
KS ci ratio: 2.698110e-01	ci left: 3.380751e-04	ci right 4.451821e-04	k: 210	n:540000
PTK7   540000 perm   245 sec   (2207 perm/sec)   p_kst 3.888889e-04   p_cons 3.799611e-01   p_joint 3.888889e-04

Joint ci ratio: 2.679133e-01	ci left: 3.370152e-04	ci right 4.429093e-04	k: 213	n:550000
Cons ci ratio: 6.751738e-03	ci left: 3.787079e-01	ci right 3.812752e-01	k: 208995	n:550000
KS ci ratio: 2.679133e-01	ci left: 3.370152e-04	ci right 4.429093e-04	k: 213	n:550000
PTK7   550000 perm   251 sec   (2192 perm/sec)   p_kst 3.872727e-04   p_cons 3.799909e-01   p_joint 3.872727e-04

Joint ci ratio: 2.660551e-01	ci left: 3.359957e-04	ci right 4.407151e-04	k: 216	n:560000
Cons ci ratio: 6.692829e-03	ci left: 3.786035e-01	ci right 3.811477e-01	k: 212730	n:560000
KS ci ratio: 2.660551e-01	ci left: 3.359957e-04	ci right 4.407151e-04	k: 216	n:560000
PTK7   560000 perm   257 sec   (2178 perm/sec)   p_kst 3.857143e-04   p_cons 3.798750e-01   p_joint 3.857143e-04

Joint ci ratio: 2.630417e-01	ci left: 3.382913e-04	ci right 4.423355e-04	k: 221	n:570000
Cons ci ratio: 6.633336e-03	ci left: 3.786520e-01	ci right 3.811738e-01	k: 216550	n:570000
KS ci ratio: 2.630417e-01	ci left: 3.382913e-04	ci right 4.423355e-04	k: 221	n:570000
PTK7   570000 perm   263 sec   (2164 perm/sec)   p_kst 3.877193e-04   p_cons 3.799123e-01   p_joint 3.877193e-04

Joint ci ratio: 2.624519e-01	ci left: 3.340692e-04	ci right 4.365466e-04	k: 222	n:580000
Cons ci ratio: 6.576196e-03	ci left: 3.786420e-01	ci right 3.811419e-01	k: 220337	n:580000
KS ci ratio: 2.624519e-01	ci left: 3.340692e-04	ci right 4.365466e-04	k: 222	n:580000
PTK7   580000 perm   270 sec   (2150 perm/sec)   p_kst 3.827586e-04   p_cons 3.798914e-01   p_joint 3.827586e-04

Joint ci ratio: 2.601293e-01	ci left: 3.347427e-04	ci right 4.363702e-04	k: 226	n:590000
Cons ci ratio: 6.520038e-03	ci left: 3.786664e-01	ci right 3.811450e-01	k: 224144	n:590000
KS ci ratio: 2.601293e-01	ci left: 3.347427e-04	ci right 4.363702e-04	k: 226	n:590000
PTK7   590000 perm   276 sec   (2135 perm/sec)   p_kst 3.830508e-04   p_cons 3.799051e-01   p_joint 3.830508e-04

Joint ci ratio: 2.556623e-01	ci left: 3.416353e-04	ci right 4.432904e-04	k: 234	n:600000
Cons ci ratio: 6.463831e-03	ci left: 3.787966e-01	ci right 3.812546e-01	k: 228015	n:600000
KS ci ratio: 2.556623e-01	ci left: 3.416353e-04	ci right 4.432904e-04	k: 234	n:600000
PTK7   600000 perm   283 sec   (2120 perm/sec)   p_kst 3.900000e-04   p_cons 3.800250e-01   p_joint 3.900000e-04

Joint ci ratio: 2.524593e-01	ci left: 3.452446e-04	ci right 4.464843e-04	k: 240	n:610000
Cons ci ratio: 6.410725e-03	ci left: 3.787997e-01	ci right 3.812375e-01	k: 231811	n:610000
KS ci ratio: 2.524593e-01	ci left: 3.452446e-04	ci right 4.464843e-04	k: 240	n:610000
PTK7   610000 perm   290 sec   (2106 perm/sec)   p_kst 3.934426e-04   p_cons 3.800180e-01   p_joint 3.934426e-04

Joint ci ratio: 2.493737e-01	ci left: 3.487452e-04	ci right 4.495675e-04	k: 246	n:620000
Cons ci ratio: 6.358254e-03	ci left: 3.788512e-01	ci right 3.812693e-01	k: 235637	n:620000
KS ci ratio: 2.493737e-01	ci left: 3.487452e-04	ci right 4.495675e-04	k: 246	n:620000
PTK7   620000 perm   297 sec   (2091 perm/sec)   p_kst 3.967742e-04   p_cons 3.800597e-01   p_joint 3.967742e-04

Joint ci ratio: 2.463986e-01	ci left: 3.521419e-04	ci right 4.525456e-04	k: 252	n:630000
Cons ci ratio: 6.307964e-03	ci left: 3.788329e-01	ci right 3.812317e-01	k: 239420	n:630000
KS ci ratio: 2.463986e-01	ci left: 3.521419e-04	ci right 4.525456e-04	k: 252	n:630000
PTK7   630000 perm   303 sec   (2078 perm/sec)   p_kst 4.000000e-04   p_cons 3.800317e-01   p_joint 4.000000e-04

Joint ci ratio: 2.449508e-01	ci left: 3.510386e-04	ci right 4.504501e-04	k: 255	n:640000
Cons ci ratio: 6.258018e-03	ci left: 3.788777e-01	ci right 3.812577e-01	k: 243243	n:640000
KS ci ratio: 2.449508e-01	ci left: 3.510386e-04	ci right 4.504501e-04	k: 255	n:640000
PTK7   640000 perm   310 sec   (2065 perm/sec)   p_kst 3.984375e-04   p_cons 3.800672e-01   p_joint 3.984375e-04

Joint ci ratio: 2.435282e-01	ci left: 3.499709e-04	ci right 4.484174e-04	k: 258	n:650000
Cons ci ratio: 6.210883e-03	ci left: 3.787967e-01	ci right 3.811582e-01	k: 246985	n:650000
KS ci ratio: 2.435282e-01	ci left: 3.499709e-04	ci right 4.484174e-04	k: 258	n:650000
PTK7   650000 perm   317 sec   (2051 perm/sec)   p_kst 3.969231e-04   p_cons 3.799769e-01   p_joint 3.969231e-04

Joint ci ratio: 2.416692e-01	ci left: 3.503605e-04	ci right 4.480515e-04	k: 262	n:660000
Cons ci ratio: 6.162954e-03	ci left: 3.788590e-01	ci right 3.812026e-01	k: 250820	n:660000
KS ci ratio: 2.416692e-01	ci left: 3.503605e-04	ci right 4.480515e-04	k: 262	n:660000
PTK7   660000 perm   324 sec   (2038 perm/sec)   p_kst 3.969697e-04   p_cons 3.800303e-01   p_joint 3.969697e-04

Joint ci ratio: 2.416699e-01	ci left: 3.451311e-04	ci right 4.413644e-04	k: 262	n:670000
Cons ci ratio: 6.117938e-03	ci left: 3.787794e-01	ci right 3.811053e-01	k: 254561	n:670000
KS ci ratio: 2.416699e-01	ci left: 3.451311e-04	ci right 4.413644e-04	k: 262	n:670000
PTK7   670000 perm   331 sec   (2025 perm/sec)   p_kst 3.910448e-04   p_cons 3.799418e-01   p_joint 3.910448e-04

Joint ci ratio: 2.407566e-01	ci left: 3.428190e-04	ci right 4.379924e-04	k: 264	n:680000
Cons ci ratio: 6.073761e-03	ci left: 3.787124e-01	ci right 3.810210e-01	k: 258309	n:680000
KS ci ratio: 2.407566e-01	ci left: 3.428190e-04	ci right 4.379924e-04	k: 264	n:680000
PTK7   680000 perm   338 sec   (2012 perm/sec)   p_kst 3.882353e-04   p_cons 3.798662e-01   p_joint 3.882353e-04

Joint ci ratio: 2.389599e-01	ci left: 3.432994e-04	ci right 4.377895e-04	k: 268	n:690000
Cons ci ratio: 6.031363e-03	ci left: 3.785822e-01	ci right 3.808739e-01	k: 262012	n:690000
KS ci ratio: 2.389599e-01	ci left: 3.432994e-04	ci right 4.377895e-04	k: 268	n:690000
PTK7   690000 perm   345 sec   (1999 perm/sec)   p_kst 3.884058e-04   p_cons 3.797275e-01   p_joint 3.884058e-04

Joint ci ratio: 2.376386e-01	ci left: 3.424249e-04	ci right 4.360765e-04	k: 271	n:700000
Cons ci ratio: 5.989167e-03	ci left: 3.785086e-01	ci right 3.807838e-01	k: 265752	n:700000
KS ci ratio: 2.376386e-01	ci left: 3.424249e-04	ci right 4.360765e-04	k: 271	n:700000
PTK7   700000 perm   353 sec   (1986 perm/sec)   p_kst 3.871429e-04   p_cons 3.796457e-01   p_joint 3.871429e-04

Joint ci ratio: 2.354839e-01	ci left: 3.442270e-04	ci right 4.373934e-04	k: 276	n:710000
Cons ci ratio: 5.947133e-03	ci left: 3.784935e-01	ci right 3.807525e-01	k: 269532	n:710000
KS ci ratio: 2.354839e-01	ci left: 3.442270e-04	ci right 4.373934e-04	k: 276	n:710000
PTK7   710000 perm   360 sec   (1972 perm/sec)   p_kst 3.887324e-04   p_cons 3.796225e-01   p_joint 3.887324e-04

Joint ci ratio: 2.333867e-01	ci left: 3.459827e-04	ci right 4.386700e-04	k: 281	n:720000
Cons ci ratio: 5.906373e-03	ci left: 3.784469e-01	ci right 3.806902e-01	k: 273289	n:720000
KS ci ratio: 2.333867e-01	ci left: 3.459827e-04	ci right 4.386700e-04	k: 281	n:720000
PTK7   720000 perm   368 sec   (1956 perm/sec)   p_kst 3.902778e-04   p_cons 3.795681e-01   p_joint 3.902778e-04

Joint ci ratio: 2.329745e-01	ci left: 3.425330e-04	ci right 4.341107e-04	k: 282	n:730000
Cons ci ratio: 5.865398e-03	ci left: 3.784852e-01	ci right 3.807130e-01	k: 277107	n:730000
KS ci ratio: 2.329745e-01	ci left: 3.425330e-04	ci right 4.341107e-04	k: 282	n:730000
PTK7   730000 perm   376 sec   (1943 perm/sec)   p_kst 3.863014e-04   p_cons 3.795986e-01   p_joint 3.863014e-04

Joint ci ratio: 2.321559e-01	ci left: 3.404493e-04	ci right 4.311043e-04	k: 284	n:740000
Cons ci ratio: 5.826836e-03	ci left: 3.783955e-01	ci right 3.806081e-01	k: 280831	n:740000
KS ci ratio: 2.321559e-01	ci left: 3.404493e-04	ci right 4.311043e-04	k: 284	n:740000
PTK7   740000 perm   383 sec   (1930 perm/sec)   p_kst 3.837838e-04   p_cons 3.795014e-01   p_joint 3.837838e-04

Joint ci ratio: 2.313459e-01	ci left: 3.384218e-04	ci right 4.281775e-04	k: 286	n:750000
Cons ci ratio: 5.787926e-03	ci left: 3.783976e-01	ci right 3.805954e-01	k: 284622	n:750000
KS ci ratio: 2.313459e-01	ci left: 3.384218e-04	ci right 4.281775e-04	k: 286	n:750000
PTK7   750000 perm   391 sec   (1917 perm/sec)   p_kst 3.813333e-04   p_cons 3.794960e-01   p_joint 3.813333e-04

Joint ci ratio: 2.270348e-01	ci left: 3.476119e-04	ci right 4.378465e-04	k: 297	n:760000
Cons ci ratio: 5.749689e-03	ci left: 3.784075e-01	ci right 3.805908e-01	k: 288419	n:760000
KS ci ratio: 2.270348e-01	ci left: 3.476119e-04	ci right 4.378465e-04	k: 297	n:760000
PTK7   760000 perm   399 sec   (1905 perm/sec)   p_kst 3.907895e-04   p_cons 3.794987e-01   p_joint 3.907895e-04

Joint ci ratio: 2.255263e-01	ci left: 3.479978e-04	ci right 4.376490e-04	k: 301	n:770000
Cons ci ratio: 5.713633e-03	ci left: 3.782991e-01	ci right 3.804680e-01	k: 292125	n:770000
KS ci ratio: 2.255263e-01	ci left: 3.479978e-04	ci right 4.376490e-04	k: 301	n:770000
PTK7   770000 perm   407 sec   (1893 perm/sec)   p_kst 3.909091e-04   p_cons 3.793831e-01   p_joint 3.909091e-04

Joint ci ratio: 2.244145e-01	ci left: 3.471657e-04	ci right 4.361006e-04	k: 304	n:780000
Cons ci ratio: 5.676949e-03	ci left: 3.783012e-01	ci right 3.804561e-01	k: 295915	n:780000
KS ci ratio: 2.244145e-01	ci left: 3.471657e-04	ci right 4.361006e-04	k: 304	n:780000
PTK7   780000 perm   415 sec   (1881 perm/sec)   p_kst 3.897436e-04   p_cons 3.793782e-01   p_joint 3.897436e-04

Joint ci ratio: 2.233190e-01	ci left: 3.463557e-04	ci right 4.345905e-04	k: 307	n:790000
Cons ci ratio: 5.640173e-03	ci left: 3.783690e-01	ci right 3.805103e-01	k: 299757	n:790000
KS ci ratio: 2.233190e-01	ci left: 3.463557e-04	ci right 4.345905e-04	k: 307	n:790000
PTK7   790000 perm   423 sec   (1869 perm/sec)   p_kst 3.886076e-04   p_cons 3.794392e-01   p_joint 3.886076e-04

Joint ci ratio: 2.201254e-01	ci left: 3.526517e-04	ci right 4.410317e-04	k: 316	n:800000
Cons ci ratio: 5.605145e-03	ci left: 3.783478e-01	ci right 3.804756e-01	k: 303529	n:800000
KS ci ratio: 2.201254e-01	ci left: 3.526517e-04	ci right 4.410317e-04	k: 316	n:800000
PTK7   800000 perm   431 sec   (1854 perm/sec)   p_kst 3.950000e-04   p_cons 3.794112e-01   p_joint 3.950000e-04

Joint ci ratio: 2.187496e-01	ci left: 3.529648e-04	ci right 4.407961e-04	k: 320	n:810000
Cons ci ratio: 5.569885e-03	ci left: 3.784011e-01	ci right 3.805158e-01	k: 307361	n:810000
KS ci ratio: 2.187496e-01	ci left: 3.529648e-04	ci right 4.407961e-04	k: 320	n:810000
PTK7   810000 perm   439 sec   (1843 perm/sec)   p_kst 3.950617e-04   p_cons 3.794580e-01   p_joint 3.950617e-04

Joint ci ratio: 2.177346e-01	ci left: 3.521189e-04	ci right 4.392787e-04	k: 323	n:820000
Cons ci ratio: 5.535654e-03	ci left: 3.784215e-01	ci right 3.805233e-01	k: 311167	n:820000
KS ci ratio: 2.177346e-01	ci left: 3.521189e-04	ci right 4.392787e-04	k: 323	n:820000
PTK7   820000 perm   448 sec   (1832 perm/sec)   p_kst 3.939024e-04   p_cons 3.794720e-01   p_joint 3.939024e-04

Joint ci ratio: 2.164029e-01	ci left: 3.524338e-04	ci right 4.390671e-04	k: 327	n:830000
Cons ci ratio: 5.502188e-03	ci left: 3.784294e-01	ci right 3.805185e-01	k: 314963	n:830000
KS ci ratio: 2.164029e-01	ci left: 3.524338e-04	ci right 4.390671e-04	k: 327	n:830000
PTK7   830000 perm   456 sec   (1821 perm/sec)   p_kst 3.939759e-04   p_cons 3.794735e-01   p_joint 3.939759e-04

Joint ci ratio: 2.144501e-01	ci left: 3.549957e-04	ci right 4.413677e-04	k: 333	n:840000
Cons ci ratio: 5.468547e-03	ci left: 3.785037e-01	ci right 3.805804e-01	k: 318815	n:840000
KS ci ratio: 2.144501e-01	ci left: 3.549957e-04	ci right 4.413677e-04	k: 333	n:840000
PTK7   840000 perm   464 sec   (1810 perm/sec)   p_kst 3.964286e-04   p_cons 3.795417e-01   p_joint 3.964286e-04

Joint ci ratio: 2.128626e-01	ci left: 3.563869e-04	ci right 4.423717e-04	k: 338	n:850000
Cons ci ratio: 5.436738e-03	ci left: 3.784706e-01	ci right 3.805350e-01	k: 322577	n:850000
KS ci ratio: 2.128626e-01	ci left: 3.563869e-04	ci right 4.423717e-04	k: 338	n:850000
PTK7   850000 perm   472 sec   (1799 perm/sec)   p_kst 3.976471e-04   p_cons 3.795024e-01   p_joint 3.976471e-04

Joint ci ratio: 2.122377e-01	ci left: 3.544446e-04	ci right 4.396771e-04	k: 340	n:860000
Cons ci ratio: 5.406092e-03	ci left: 3.783847e-01	ci right 3.804370e-01	k: 326293	n:860000
KS ci ratio: 2.122377e-01	ci left: 3.544446e-04	ci right 4.396771e-04	k: 340	n:860000
PTK7   860000 perm   481 sec   (1788 perm/sec)   p_kst 3.953488e-04   p_cons 3.794105e-01   p_joint 3.953488e-04

Joint ci ratio: 2.119275e-01	ci left: 3.514589e-04	ci right 4.358338e-04	k: 341	n:870000
Cons ci ratio: 5.375590e-03	ci left: 3.783331e-01	ci right 3.803735e-01	k: 330037	n:870000
KS ci ratio: 2.119275e-01	ci left: 3.514589e-04	ci right 4.358338e-04	k: 341	n:870000
PTK7   870000 perm   490 sec   (1777 perm/sec)   p_kst 3.919540e-04   p_cons 3.793529e-01   p_joint 3.919540e-04

Joint ci ratio: 2.100924e-01	ci left: 3.539230e-04	ci right 4.380591e-04	k: 347	n:880000
Cons ci ratio: 5.344760e-03	ci left: 3.783565e-01	ci right 3.803852e-01	k: 333846	n:880000
KS ci ratio: 2.100924e-01	ci left: 3.539230e-04	ci right 4.380591e-04	k: 347	n:880000
PTK7   880000 perm   498 sec   (1766 perm/sec)   p_kst 3.943182e-04   p_cons 3.793705e-01   p_joint 3.943182e-04

Joint ci ratio: 2.085991e-01	ci left: 3.552698e-04	ci right 4.390491e-04	k: 352	n:890000
Cons ci ratio: 5.313922e-03	ci left: 3.784265e-01	ci right 3.804439e-01	k: 337697	n:890000
KS ci ratio: 2.085991e-01	ci left: 3.552698e-04	ci right 4.390491e-04	k: 352	n:890000
PTK7   890000 perm   507 sec   (1755 perm/sec)   p_kst 3.955056e-04   p_cons 3.794348e-01   p_joint 3.955056e-04

Joint ci ratio: 2.065607e-01	ci left: 3.586959e-04	ci right 4.423522e-04	k: 359	n:900000
Cons ci ratio: 5.284696e-03	ci left: 3.783985e-01	ci right 3.804045e-01	k: 341461	n:900000
KS ci ratio: 2.065607e-01	ci left: 3.586959e-04	ci right 4.423522e-04	k: 359	n:900000
PTK7   900000 perm   516 sec   (1744 perm/sec)   p_kst 3.988889e-04   p_cons 3.794011e-01   p_joint 3.988889e-04

Joint ci ratio: 2.062747e-01	ci left: 3.557963e-04	ci right 4.386469e-04	k: 360	n:910000
Cons ci ratio: 5.255261e-03	ci left: 3.784325e-01	ci right 3.804276e-01	k: 345281	n:910000
KS ci ratio: 2.062747e-01	ci left: 3.557963e-04	ci right 4.386469e-04	k: 360	n:910000
PTK7   910000 perm   525 sec   (1733 perm/sec)   p_kst 3.956044e-04   p_cons 3.794297e-01   p_joint 3.956044e-04

Joint ci ratio: 2.057059e-01	ci left: 3.539906e-04	ci right 4.361649e-04	k: 362	n:920000
Cons ci ratio: 5.226517e-03	ci left: 3.784474e-01	ci right 3.804316e-01	k: 349084	n:920000
KS ci ratio: 2.057059e-01	ci left: 3.539906e-04	ci right 4.361649e-04	k: 362	n:920000
PTK7   920000 perm   534 sec   (1723 perm/sec)   p_kst 3.934783e-04   p_cons 3.794391e-01   p_joint 3.934783e-04

Joint ci ratio: 2.043036e-01	ci left: 3.552847e-04	ci right 4.371269e-04	k: 367	n:930000
Cons ci ratio: 5.198975e-03	ci left: 3.783954e-01	ci right 3.803688e-01	k: 352825	n:930000
KS ci ratio: 2.043036e-01	ci left: 3.552847e-04	ci right 4.371269e-04	k: 367	n:930000
PTK7   930000 perm   543 sec   (1713 perm/sec)   p_kst 3.946237e-04   p_cons 3.793817e-01   p_joint 3.946237e-04

Joint ci ratio: 2.029295e-01	ci left: 3.565530e-04	ci right 4.380665e-04	k: 372	n:940000
Cons ci ratio: 5.170988e-03	ci left: 3.784242e-01	ci right 3.803872e-01	k: 356641	n:940000
KS ci ratio: 2.029295e-01	ci left: 3.565530e-04	ci right 4.380665e-04	k: 372	n:940000
PTK7   940000 perm   552 sec   (1702 perm/sec)   p_kst 3.957447e-04   p_cons 3.794053e-01   p_joint 3.957447e-04

Joint ci ratio: 2.015828e-01	ci left: 3.577965e-04	ci right 4.389846e-04	k: 377	n:950000
Cons ci ratio: 5.143827e-03	ci left: 3.784178e-01	ci right 3.803703e-01	k: 360424	n:950000
KS ci ratio: 2.015828e-01	ci left: 3.577965e-04	ci right 4.389846e-04	k: 377	n:950000
PTK7   950000 perm   561 sec   (1692 perm/sec)   p_kst 3.968421e-04   p_cons 3.793937e-01   p_joint 3.968421e-04

Joint ci ratio: 2.007877e-01	ci left: 3.570370e-04	ci right 4.376941e-04	k: 380	n:960000
Cons ci ratio: 5.116242e-03	ci left: 3.784896e-01	ci right 3.804320e-01	k: 364282	n:960000
KS ci ratio: 2.007877e-01	ci left: 3.570370e-04	ci right 4.376941e-04	k: 380	n:960000
PTK7   960000 perm   571 sec   (1682 perm/sec)   p_kst 3.958333e-04   p_cons 3.794604e-01   p_joint 3.958333e-04

Joint ci ratio: 1.997419e-01	ci left: 3.572732e-04	ci right 4.375120e-04	k: 384	n:970000
Cons ci ratio: 5.089774e-03	ci left: 3.784971e-01	ci right 3.804294e-01	k: 368079	n:970000
KS ci ratio: 1.997419e-01	ci left: 3.572732e-04	ci right 4.375120e-04	k: 384	n:970000
PTK7   970000 perm   580 sec   (1672 perm/sec)   p_kst 3.958763e-04   p_cons 3.794629e-01   p_joint 3.958763e-04

Joint ci ratio: 1.989683e-01	ci left: 3.565359e-04	ci right 4.362614e-04	k: 387	n:980000
Cons ci ratio: 5.063395e-03	ci left: 3.785340e-01	ci right 3.804565e-01	k: 371905	n:980000
KS ci ratio: 1.989683e-01	ci left: 3.565359e-04	ci right 4.362614e-04	k: 387	n:980000
PTK7   980000 perm   589 sec   (1663 perm/sec)   p_kst 3.948980e-04   p_cons 3.794949e-01   p_joint 3.948980e-04

Joint ci ratio: 1.987127e-01	ci left: 3.538943e-04	ci right 4.329152e-04	k: 388	n:990000
Cons ci ratio: 5.037347e-03	ci left: 3.785773e-01	ci right 3.804901e-01	k: 375738	n:990000
KS ci ratio: 1.987127e-01	ci left: 3.538943e-04	ci right 4.329152e-04	k: 388	n:990000
PTK7   990000 perm   599 sec   (1653 perm/sec)   p_kst 3.919192e-04   p_cons 3.795333e-01   p_joint 3.919192e-04

Joint ci ratio: 1.971975e-01	ci left: 3.560580e-04	ci right 4.348830e-04	k: 394	n:1000000
Cons ci ratio: 5.011696e-03	ci left: 3.786197e-01	ci right 3.805230e-01	k: 379571	n:1000000
KS ci ratio: 1.971975e-01	ci left: 3.560580e-04	ci right 4.348830e-04	k: 394	n:1000000
PTK7   1000000 perm   609 sec   (1642 perm/sec)   p_kst 3.940000e-04   p_cons 3.795710e-01   p_joint 3.940000e-04

Joint ci ratio: 1.954728e-01	ci left: 3.591228e-04	ci right 4.378481e-04	k: 401	n:1010000
Cons ci ratio: 4.986643e-03	ci left: 3.786416e-01	ci right 3.805354e-01	k: 383384	n:1010000
KS ci ratio: 1.954728e-01	ci left: 3.591228e-04	ci right 4.378481e-04	k: 401	n:1010000
PTK7   1010000 perm   619 sec   (1633 perm/sec)   p_kst 3.970297e-04   p_cons 3.795881e-01   p_joint 3.970297e-04

Joint ci ratio: 1.945075e-01	ci left: 3.593321e-04	ci right 4.376682e-04	k: 405	n:1020000
Cons ci ratio: 4.962323e-03	ci left: 3.786287e-01	ci right 3.805132e-01	k: 387162	n:1020000
KS ci ratio: 1.945075e-01	ci left: 3.593321e-04	ci right 4.376682e-04	k: 405	n:1020000
PTK7   1020000 perm   629 sec   (1623 perm/sec)   p_kst 3.970588e-04   p_cons 3.795706e-01   p_joint 3.970588e-04

Joint ci ratio: 1.928518e-01	ci left: 3.623101e-04	ci right 4.405442e-04	k: 412	n:1030000
Cons ci ratio: 4.937928e-03	ci left: 3.786568e-01	ci right 3.805322e-01	k: 390982	n:1030000
KS ci ratio: 1.928518e-01	ci left: 3.623101e-04	ci right 4.405442e-04	k: 412	n:1030000
PTK7   1030000 perm   638 sec   (1614 perm/sec)   p_kst 4.000000e-04   p_cons 3.795942e-01   p_joint 4.000000e-04

Joint ci ratio: 1.926190e-01	ci left: 3.597414e-04	ci right 4.373161e-04	k: 413	n:1040000
Cons ci ratio: 4.913839e-03	ci left: 3.786893e-01	ci right 3.805556e-01	k: 394807	n:1040000
KS ci ratio: 1.926190e-01	ci left: 3.597414e-04	ci right 4.373161e-04	k: 413	n:1040000
PTK7   1040000 perm   648 sec   (1604 perm/sec)   p_kst 3.971154e-04   p_cons 3.796221e-01   p_joint 3.971154e-04

Joint ci ratio: 1.914662e-01	ci left: 3.608483e-04	ci right 4.381418e-04	k: 418	n:1050000
Cons ci ratio: 4.891069e-03	ci left: 3.786278e-01	ci right 3.804852e-01	k: 398534	n:1050000
KS ci ratio: 1.914662e-01	ci left: 3.608483e-04	ci right 4.381418e-04	k: 418	n:1050000
PTK7   1050000 perm   658 sec   (1596 perm/sec)   p_kst 3.980952e-04   p_cons 3.795562e-01   p_joint 3.980952e-04

Joint ci ratio: 1.907845e-01	ci left: 3.601388e-04	ci right 4.369738e-04	k: 421	n:1060000
Cons ci ratio: 4.868300e-03	ci left: 3.785978e-01	ci right 3.804463e-01	k: 402293	n:1060000
KS ci ratio: 1.907845e-01	ci left: 3.601388e-04	ci right 4.369738e-04	k: 421	n:1060000
PTK7   1060000 perm   668 sec   (1586 perm/sec)   p_kst 3.971698e-04   p_cons 3.795217e-01   p_joint 3.971698e-04

Joint ci ratio: 1.901101e-01	ci left: 3.594431e-04	ci right 4.358272e-04	k: 424	n:1070000
Cons ci ratio: 4.845442e-03	ci left: 3.786075e-01	ci right 3.804474e-01	k: 406094	n:1070000
KS ci ratio: 1.901101e-01	ci left: 3.594431e-04	ci right 4.358272e-04	k: 424	n:1070000
PTK7   1070000 perm   678 sec   (1577 perm/sec)   p_kst 3.962617e-04   p_cons 3.795271e-01   p_joint 3.962617e-04

Joint ci ratio: 1.898871e-01	ci left: 3.569968e-04	ci right 4.327618e-04	k: 425	n:1080000
Cons ci ratio: 4.823576e-03	ci left: 3.785513e-01	ci right 3.803826e-01	k: 409824	n:1080000
KS ci ratio: 1.898871e-01	ci left: 3.569968e-04	ci right 4.327618e-04	k: 425	n:1080000
PTK7   1080000 perm   689 sec   (1568 perm/sec)   p_kst 3.935185e-04   p_cons 3.794667e-01   p_joint 3.935185e-04

Joint ci ratio: 1.890018e-01	ci left: 3.572173e-04	ci right 4.326350e-04	k: 429	n:1090000
Cons ci ratio: 4.801087e-03	ci left: 3.785861e-01	ci right 3.804090e-01	k: 413652	n:1090000
KS ci ratio: 1.890018e-01	ci left: 3.572173e-04	ci right 4.326350e-04	k: 429	n:1090000
PTK7   1090000 perm   699 sec   (1559 perm/sec)   p_kst 3.935780e-04   p_cons 3.794972e-01   p_joint 3.935780e-04

Joint ci ratio: 1.881288e-01	ci left: 3.574345e-04	ci right 4.325098e-04	k: 433	n:1100000
Cons ci ratio: 4.779177e-03	ci left: 3.785939e-01	ci right 3.804085e-01	k: 417451	n:1100000
KS ci ratio: 1.881288e-01	ci left: 3.574345e-04	ci right 4.325098e-04	k: 433	n:1100000
PTK7   1100000 perm   710 sec   (1550 perm/sec)   p_kst 3.936364e-04   p_cons 3.795009e-01   p_joint 3.936364e-04

Joint ci ratio: 1.870543e-01	ci left: 3.585074e-04	ci right 4.333291e-04	k: 438	n:1110000
Cons ci ratio: 4.756982e-03	ci left: 3.786593e-01	ci right 3.804657e-01	k: 421314	n:1110000
KS ci ratio: 1.870543e-01	ci left: 3.585074e-04	ci right 4.333291e-04	k: 438	n:1110000
PTK7   1110000 perm   720 sec   (1542 perm/sec)   p_kst 3.945946e-04   p_cons 3.795622e-01   p_joint 3.945946e-04

Joint ci ratio: 1.862079e-01	ci left: 3.587110e-04	ci right 4.331982e-04	k: 442	n:1120000
Cons ci ratio: 4.735254e-03	ci left: 3.787074e-01	ci right 3.805058e-01	k: 425159	n:1120000
KS ci ratio: 1.862079e-01	ci left: 3.587110e-04	ci right 4.331982e-04	k: 442	n:1120000
PTK7   1120000 perm   730 sec   (1533 perm/sec)   p_kst 3.946429e-04   p_cons 3.796062e-01   p_joint 3.946429e-04

Joint ci ratio: 1.851658e-01	ci left: 3.597557e-04	ci right 4.339948e-04	k: 447	n:1130000
Cons ci ratio: 4.714646e-03	ci left: 3.786724e-01	ci right 3.804628e-01	k: 428911	n:1130000
KS ci ratio: 1.851658e-01	ci left: 3.597557e-04	ci right 4.339948e-04	k: 447	n:1130000
PTK7   1130000 perm   741 sec   (1525 perm/sec)   p_kst 3.955752e-04   p_cons 3.795673e-01   p_joint 3.955752e-04

Joint ci ratio: 1.839380e-01	ci left: 3.616200e-04	ci right 4.356938e-04	k: 453	n:1140000
Cons ci ratio: 4.693700e-03	ci left: 3.786985e-01	ci right 3.804810e-01	k: 432732	n:1140000
KS ci ratio: 1.839380e-01	ci left: 3.616200e-04	ci right 4.356938e-04	k: 453	n:1140000
PTK7   1140000 perm   752 sec   (1516 perm/sec)   p_kst 3.973684e-04   p_cons 3.795895e-01   p_joint 3.973684e-04

Joint ci ratio: 1.829333e-01	ci left: 3.626237e-04	ci right 4.364524e-04	k: 458	n:1150000
Cons ci ratio: 4.672454e-03	ci left: 3.787825e-01	ci right 3.805573e-01	k: 436620	n:1150000
KS ci ratio: 1.829333e-01	ci left: 3.626237e-04	ci right 4.364524e-04	k: 458	n:1150000
PTK7   1150000 perm   763 sec   (1507 perm/sec)   p_kst 3.982609e-04   p_cons 3.796696e-01   p_joint 3.982609e-04

Joint ci ratio: 1.817491e-01	ci left: 3.644340e-04	ci right 4.380980e-04	k: 464	n:1160000
Cons ci ratio: 4.651817e-03	ci left: 3.788322e-01	ci right 3.805994e-01	k: 440470	n:1160000
KS ci ratio: 1.817491e-01	ci left: 3.644340e-04	ci right 4.380980e-04	k: 464	n:1160000
PTK7   1160000 perm   774 sec   (1499 perm/sec)   p_kst 4.000000e-04   p_cons 3.797155e-01   p_joint 4.000000e-04

Joint ci ratio: 1.815542e-01	ci left: 3.621349e-04	ci right 4.352472e-04	k: 465	n:1170000
Cons ci ratio: 4.632316e-03	ci left: 3.787932e-01	ci right 3.805527e-01	k: 444217	n:1170000
KS ci ratio: 1.815542e-01	ci left: 3.621349e-04	ci right 4.352472e-04	k: 465	n:1170000
PTK7   1170000 perm   785 sec   (1491 perm/sec)   p_kst 3.974359e-04   p_cons 3.796726e-01   p_joint 3.974359e-04

Joint ci ratio: 1.805879e-01	ci left: 3.631113e-04	ci right 4.359878e-04	k: 470	n:1180000
Cons ci ratio: 4.613167e-03	ci left: 3.787438e-01	ci right 3.804958e-01	k: 447951	n:1180000
KS ci ratio: 1.805879e-01	ci left: 3.631113e-04	ci right 4.359878e-04	k: 470	n:1180000
PTK7   1180000 perm   796 sec   (1483 perm/sec)   p_kst 3.983051e-04   p_cons 3.796195e-01   p_joint 3.983051e-04

Joint ci ratio: 1.800156e-01	ci left: 3.624671e-04	ci right 4.349587e-04	k: 473	n:1190000
Cons ci ratio: 4.593212e-03	ci left: 3.788019e-01	ci right 3.805466e-01	k: 451812	n:1190000
KS ci ratio: 1.800156e-01	ci left: 3.624671e-04	ci right 4.349587e-04	k: 473	n:1190000
PTK7   1190000 perm   807 sec   (1475 perm/sec)   p_kst 3.974790e-04   p_cons 3.796739e-01   p_joint 3.974790e-04

Joint ci ratio: 1.792608e-01	ci left: 3.626300e-04	ci right 4.348171e-04	k: 477	n:1200000
Cons ci ratio: 4.574379e-03	ci left: 3.787699e-01	ci right 3.805073e-01	k: 455566	n:1200000
KS ci ratio: 1.792608e-01	ci left: 3.626300e-04	ci right 4.348171e-04	k: 477	n:1200000
PTK7   1200000 perm   818 sec   (1467 perm/sec)   p_kst 3.975000e-04   p_cons 3.796383e-01   p_joint 3.975000e-04

Joint ci ratio: 1.783305e-01	ci left: 3.635804e-04	ci right 4.355405e-04	k: 482	n:1210000
Cons ci ratio: 4.556512e-03	ci left: 3.786625e-01	ci right 3.803926e-01	k: 459228	n:1210000
KS ci ratio: 1.783305e-01	ci left: 3.635804e-04	ci right 4.355405e-04	k: 482	n:1210000
PTK7   1210000 perm   829 sec   (1459 perm/sec)   p_kst 3.983471e-04   p_cons 3.795273e-01   p_joint 3.983471e-04

Joint ci ratio: 1.774145e-01	ci left: 3.645161e-04	ci right 4.362511e-04	k: 487	n:1220000
Cons ci ratio: 4.537391e-03	ci left: 3.787084e-01	ci right 3.804315e-01	k: 463075	n:1220000
KS ci ratio: 1.774145e-01	ci left: 3.645161e-04	ci right 4.362511e-04	k: 487	n:1220000
PTK7   1220000 perm   840 sec   (1452 perm/sec)   p_kst 3.991803e-04   p_cons 3.795697e-01   p_joint 3.991803e-04

Joint ci ratio: 1.770522e-01	ci left: 3.631065e-04	ci right 4.344025e-04	k: 489	n:1230000
Cons ci ratio: 4.519031e-03	ci left: 3.786992e-01	ci right 3.804152e-01	k: 466855	n:1230000
KS ci ratio: 1.770522e-01	ci left: 3.631065e-04	ci right 4.344025e-04	k: 489	n:1230000
PTK7   1230000 perm   852 sec   (1444 perm/sec)   p_kst 3.975610e-04   p_cons 3.795569e-01   p_joint 3.975610e-04

Joint ci ratio: 1.761557e-01	ci left: 3.640322e-04	ci right 4.351095e-04	k: 494	n:1240000
Cons ci ratio: 4.500638e-03	ci left: 3.787167e-01	ci right 3.804258e-01	k: 470668	n:1240000
KS ci ratio: 1.761557e-01	ci left: 3.640322e-04	ci right 4.351095e-04	k: 494	n:1240000
PTK7   1240000 perm   863 sec   (1436 perm/sec)   p_kst 3.983871e-04   p_cons 3.795710e-01   p_joint 3.983871e-04

Joint ci ratio: 1.756243e-01	ci left: 3.634143e-04	ci right 4.341342e-04	k: 497	n:1250000
Cons ci ratio: 4.482582e-03	ci left: 3.787220e-01	ci right 3.804242e-01	k: 474466	n:1250000
KS ci ratio: 1.756243e-01	ci left: 3.634143e-04	ci right 4.341342e-04	k: 497	n:1250000
PTK7   1250000 perm   875 sec   (1428 perm/sec)   p_kst 3.976000e-04   p_cons 3.795728e-01   p_joint 3.976000e-04

Joint ci ratio: 1.754485e-01	ci left: 3.612888e-04	ci right 4.315172e-04	k: 498	n:1260000
Cons ci ratio: 4.465419e-03	ci left: 3.786557e-01	ci right 3.803512e-01	k: 478174	n:1260000
KS ci ratio: 1.754485e-01	ci left: 3.612888e-04	ci right 4.315172e-04	k: 498	n:1260000
PTK7   1260000 perm   887 sec   (1420 perm/sec)   p_kst 3.952381e-04   p_cons 3.795032e-01   p_joint 3.952381e-04

Joint ci ratio: 1.749235e-01	ci left: 3.607026e-04	ci right 4.305852e-04	k: 501	n:1270000
Cons ci ratio: 4.447447e-03	ci left: 3.786968e-01	ci right 3.803856e-01	k: 482017	n:1270000
KS ci ratio: 1.749235e-01	ci left: 3.607026e-04	ci right 4.305852e-04	k: 501	n:1270000
PTK7   1270000 perm   899 sec   (1413 perm/sec)   p_kst 3.944882e-04   p_cons 3.795409e-01   p_joint 3.944882e-04

Joint ci ratio: 1.744032e-01	ci left: 3.601259e-04	ci right 4.296673e-04	k: 504	n:1280000
Cons ci ratio: 4.430102e-03	ci left: 3.786936e-01	ci right 3.803757e-01	k: 485804	n:1280000
KS ci ratio: 1.744032e-01	ci left: 3.601259e-04	ci right 4.296673e-04	k: 504	n:1280000
PTK7   1280000 perm   911 sec   (1406 perm/sec)   p_kst 3.937500e-04   p_cons 3.795344e-01   p_joint 3.937500e-04

Joint ci ratio: 1.740590e-01	ci left: 3.588170e-04	ci right 4.279545e-04	k: 506	n:1290000
Cons ci ratio: 4.412747e-03	ci left: 3.787129e-01	ci right 3.803885e-01	k: 489620	n:1290000
KS ci ratio: 1.740590e-01	ci left: 3.588170e-04	ci right 4.279545e-04	k: 506	n:1290000
PTK7   1290000 perm   923 sec   (1398 perm/sec)   p_kst 3.922481e-04   p_cons 3.795504e-01   p_joint 3.922481e-04

Joint ci ratio: 1.737169e-01	ci left: 3.575283e-04	ci right 4.262680e-04	k: 508	n:1300000
Cons ci ratio: 4.395746e-03	ci left: 3.787157e-01	ci right 3.803848e-01	k: 493415	n:1300000
KS ci ratio: 1.737169e-01	ci left: 3.575283e-04	ci right 4.262680e-04	k: 508	n:1300000
PTK7   1300000 perm   935 sec   (1391 perm/sec)   p_kst 3.907692e-04   p_cons 3.795500e-01   p_joint 3.907692e-04

Joint ci ratio: 1.732072e-01	ci left: 3.569898e-04	ci right 4.254034e-04	k: 511	n:1310000
Cons ci ratio: 4.379188e-03	ci left: 3.786918e-01	ci right 3.803545e-01	k: 497175	n:1310000
KS ci ratio: 1.732072e-01	ci left: 3.569898e-04	ci right 4.254034e-04	k: 511	n:1310000
PTK7   1310000 perm   947 sec   (1383 perm/sec)   p_kst 3.900763e-04   p_cons 3.795229e-01   p_joint 3.900763e-04

Joint ci ratio: 1.722010e-01	ci left: 3.586343e-04	ci right 4.269224e-04	k: 517	n:1320000
Cons ci ratio: 4.361960e-03	ci left: 3.787607e-01	ci right 3.804171e-01	k: 501057	n:1320000
KS ci ratio: 1.722010e-01	ci left: 3.586343e-04	ci right 4.269224e-04	k: 517	n:1320000
PTK7   1320000 perm   959 sec   (1376 perm/sec)   p_kst 3.916667e-04   p_cons 3.795886e-01   p_joint 3.916667e-04

Joint ci ratio: 1.717046e-01	ci left: 3.580964e-04	ci right 4.260651e-04	k: 520	n:1330000
Cons ci ratio: 4.345912e-03	ci left: 3.787225e-01	ci right 3.803727e-01	k: 504798	n:1330000
KS ci ratio: 1.717046e-01	ci left: 3.580964e-04	ci right 4.260651e-04	k: 520	n:1330000
PTK7   1330000 perm   971 sec   (1370 perm/sec)   p_kst 3.909774e-04   p_cons 3.795474e-01   p_joint 3.909774e-04

Joint ci ratio: 1.705624e-01	ci left: 3.604242e-04	ci right 4.283329e-04	k: 527	n:1340000
Cons ci ratio: 4.329120e-03	ci left: 3.787849e-01	ci right 3.804290e-01	k: 508673	n:1340000
KS ci ratio: 1.705624e-01	ci left: 3.604242e-04	ci right 4.283329e-04	k: 527	n:1340000
PTK7   1340000 perm   984 sec   (1362 perm/sec)   p_kst 3.932836e-04   p_cons 3.796067e-01   p_joint 3.932836e-04

Joint ci ratio: 1.694427e-01	ci left: 3.627190e-04	ci right 4.305656e-04	k: 534	n:1350000
Cons ci ratio: 4.313165e-03	ci left: 3.787761e-01	ci right 3.804141e-01	k: 512453	n:1350000
KS ci ratio: 1.694427e-01	ci left: 3.627190e-04	ci right 4.305656e-04	k: 534	n:1350000
PTK7   1350000 perm   996 sec   (1356 perm/sec)   p_kst 3.955556e-04   p_cons 3.795948e-01   p_joint 3.955556e-04

Joint ci ratio: 1.688128e-01	ci left: 3.628686e-04	ci right 4.304652e-04	k: 538	n:1360000
Cons ci ratio: 4.297520e-03	ci left: 3.787527e-01	ci right 3.803846e-01	k: 516213	n:1360000
KS ci ratio: 1.688128e-01	ci left: 3.628686e-04	ci right 4.304652e-04	k: 538	n:1360000
PTK7   1360000 perm   1008 sec   (1349 perm/sec)   p_kst 3.955882e-04   p_cons 3.795684e-01   p_joint 3.955882e-04

Joint ci ratio: 1.686566e-01	ci left: 3.609190e-04	ci right 4.280839e-04	k: 539	n:1370000
Cons ci ratio: 4.281885e-03	ci left: 3.787471e-01	ci right 3.803731e-01	k: 519997	n:1370000
KS ci ratio: 1.686566e-01	ci left: 3.609190e-04	ci right 4.280839e-04	k: 539	n:1370000
PTK7   1370000 perm   1021 sec   (1342 perm/sec)   p_kst 3.934307e-04   p_cons 3.795599e-01   p_joint 3.934307e-04

Joint ci ratio: 1.685009e-01	ci left: 3.589977e-04	ci right 4.257370e-04	k: 540	n:1380000
Cons ci ratio: 4.266464e-03	ci left: 3.787366e-01	ci right 3.803566e-01	k: 523774	n:1380000
KS ci ratio: 1.685009e-01	ci left: 3.589977e-04	ci right 4.257370e-04	k: 540	n:1380000
PTK7   1380000 perm   1034 sec   (1335 perm/sec)   p_kst 3.913043e-04   p_cons 3.795464e-01   p_joint 3.913043e-04

Joint ci ratio: 1.678814e-01	ci left: 3.591715e-04	ci right 4.256729e-04	k: 544	n:1390000
Cons ci ratio: 4.251547e-03	ci left: 3.786889e-01	ci right 3.803030e-01	k: 527499	n:1390000
KS ci ratio: 1.678814e-01	ci left: 3.591715e-04	ci right 4.256729e-04	k: 544	n:1390000
PTK7   1390000 perm   1046 sec   (1329 perm/sec)   p_kst 3.913669e-04   p_cons 3.794957e-01   p_joint 3.913669e-04

Joint ci ratio: 1.668133e-01	ci left: 3.613967e-04	ci right 4.278416e-04	k: 551	n:1400000
Cons ci ratio: 4.236516e-03	ci left: 3.786718e-01	ci right 3.802801e-01	k: 531266	n:1400000
KS ci ratio: 1.668133e-01	ci left: 3.613967e-04	ci right 4.278416e-04	k: 551	n:1400000
PTK7   1400000 perm   1059 sec   (1322 perm/sec)   p_kst 3.935714e-04   p_cons 3.794757e-01   p_joint 3.935714e-04

Joint ci ratio: 1.662122e-01	ci left: 3.615522e-04	ci right 4.277622e-04	k: 555	n:1410000
Cons ci ratio: 4.221026e-03	ci left: 3.787237e-01	ci right 3.803264e-01	k: 535130	n:1410000
KS ci ratio: 1.662122e-01	ci left: 3.615522e-04	ci right 4.277622e-04	k: 555	n:1410000
PTK7   1410000 perm   1071 sec   (1316 perm/sec)   p_kst 3.936170e-04   p_cons 3.795248e-01   p_joint 3.936170e-04

Joint ci ratio: 1.654698e-01	ci left: 3.623811e-04	ci right 4.284169e-04	k: 560	n:1420000
Cons ci ratio: 4.206038e-03	ci left: 3.787377e-01	ci right 3.803347e-01	k: 538941	n:1420000
KS ci ratio: 1.654698e-01	ci left: 3.623811e-04	ci right 4.284169e-04	k: 560	n:1420000
PTK7   1420000 perm   1084 sec   (1310 perm/sec)   p_kst 3.943662e-04   p_cons 3.795359e-01   p_joint 3.943662e-04

Joint ci ratio: 1.648830e-01	ci left: 3.625285e-04	ci right 4.283337e-04	k: 564	n:1430000
Cons ci ratio: 4.191463e-03	ci left: 3.787227e-01	ci right 3.803141e-01	k: 542711	n:1430000
KS ci ratio: 1.648830e-01	ci left: 3.625285e-04	ci right 4.283337e-04	k: 564	n:1430000
PTK7   1430000 perm   1097 sec   (1303 perm/sec)   p_kst 3.944056e-04   p_cons 3.795182e-01   p_joint 3.944056e-04

Joint ci ratio: 1.643024e-01	ci left: 3.626743e-04	ci right 4.282513e-04	k: 568	n:1440000
Cons ci ratio: 4.176719e-03	ci left: 3.787441e-01	ci right 3.803300e-01	k: 546533	n:1440000
KS ci ratio: 1.643024e-01	ci left: 3.626743e-04	ci right 4.282513e-04	k: 568	n:1440000
PTK7   1440000 perm   1110 sec   (1297 perm/sec)   p_kst 3.944444e-04   p_cons 3.795368e-01   p_joint 3.944444e-04

Joint ci ratio: 1.637279e-01	ci left: 3.628185e-04	ci right 4.281696e-04	k: 572	n:1450000
Cons ci ratio: 4.162349e-03	ci left: 3.787404e-01	ci right 3.803208e-01	k: 550319	n:1450000
KS ci ratio: 1.637279e-01	ci left: 3.628185e-04	ci right 4.281696e-04	k: 572	n:1450000
PTK7   1450000 perm   1124 sec   (1290 perm/sec)   p_kst 3.944828e-04   p_cons 3.795303e-01   p_joint 3.944828e-04

Joint ci ratio: 1.627368e-01	ci left: 3.649322e-04	ci right 4.302271e-04	k: 579	n:1460000
Cons ci ratio: 4.147969e-03	ci left: 3.787545e-01	ci right 3.803295e-01	k: 554131	n:1460000
KS ci ratio: 1.627368e-01	ci left: 3.649322e-04	ci right 4.302271e-04	k: 579	n:1460000
PTK7   1460000 perm   1137 sec   (1284 perm/sec)   p_kst 3.965753e-04   p_cons 3.795418e-01   p_joint 3.965753e-04

Joint ci ratio: 1.624570e-01	ci left: 3.637548e-04	ci right 4.287162e-04	k: 581	n:1470000
Cons ci ratio: 4.133648e-03	ci left: 3.787787e-01	ci right 3.803483e-01	k: 557958	n:1470000
KS ci ratio: 1.624570e-01	ci left: 3.637548e-04	ci right 4.287162e-04	k: 581	n:1470000
PTK7   1470000 perm   1150 sec   (1278 perm/sec)   p_kst 3.952381e-04   p_cons 3.795633e-01   p_joint 3.952381e-04

Joint ci ratio: 1.619016e-01	ci left: 3.638900e-04	ci right 4.286318e-04	k: 585	n:1480000
Cons ci ratio: 4.120017e-03	ci left: 3.787404e-01	ci right 3.803047e-01	k: 561693	n:1480000
KS ci ratio: 1.619016e-01	ci left: 3.638900e-04	ci right 4.286318e-04	k: 585	n:1480000
PTK7   1480000 perm   1163 sec   (1272 perm/sec)   p_kst 3.952703e-04   p_cons 3.795223e-01   p_joint 3.952703e-04

Joint ci ratio: 1.613518e-01	ci left: 3.640238e-04	ci right 4.285481e-04	k: 589	n:1490000
Cons ci ratio: 4.105983e-03	ci left: 3.787643e-01	ci right 3.803234e-01	k: 565520	n:1490000
KS ci ratio: 1.613518e-01	ci left: 3.640238e-04	ci right 4.285481e-04	k: 589	n:1490000
PTK7   1490000 perm   1177 sec   (1266 perm/sec)   p_kst 3.953020e-04   p_cons 3.795436e-01   p_joint 3.953020e-04

Joint ci ratio: 1.604029e-01	ci left: 3.660758e-04	ci right 4.305455e-04	k: 596	n:1500000
Cons ci ratio: 4.092235e-03	ci left: 3.787713e-01	ci right 3.803252e-01	k: 569322	n:1500000
KS ci ratio: 1.604029e-01	ci left: 3.660758e-04	ci right 4.305455e-04	k: 596	n:1500000
PTK7   1500000 perm   1190 sec   (1261 perm/sec)   p_kst 3.973333e-04   p_cons 3.795480e-01   p_joint 3.973333e-04

Joint ci ratio: 1.597354e-01	ci left: 3.668301e-04	ci right 4.311380e-04	k: 601	n:1510000
Cons ci ratio: 4.078287e-03	ci left: 3.788173e-01	ci right 3.803660e-01	k: 573183	n:1510000
KS ci ratio: 1.597354e-01	ci left: 3.668301e-04	ci right 4.311380e-04	k: 601	n:1510000
PTK7   1510000 perm   1204 sec   (1255 perm/sec)   p_kst 3.980132e-04   p_cons 3.795914e-01   p_joint 3.980132e-04

Joint ci ratio: 1.586843e-01	ci left: 3.694702e-04	ci right 4.337741e-04	k: 609	n:1520000
Cons ci ratio: 4.064230e-03	ci left: 3.788916e-01	ci right 3.804352e-01	k: 577088	n:1520000
KS ci ratio: 1.586843e-01	ci left: 3.694702e-04	ci right 4.337741e-04	k: 609	n:1520000
PTK7   1520000 perm   1217 sec   (1249 perm/sec)   p_kst 4.006579e-04   p_cons 3.796632e-01   p_joint 4.006579e-04

Joint ci ratio: 1.581665e-01	ci left: 3.695661e-04	ci right 4.336570e-04	k: 613	n:1530000
Cons ci ratio: 4.050924e-03	ci left: 3.788943e-01	ci right 3.804329e-01	k: 580885	n:1530000
KS ci ratio: 1.581665e-01	ci left: 3.695661e-04	ci right 4.336570e-04	k: 613	n:1530000
PTK7   1530000 perm   1231 sec   (1243 perm/sec)   p_kst 4.006536e-04   p_cons 3.796634e-01   p_joint 4.006536e-04

Joint ci ratio: 1.579097e-01	ci left: 3.684137e-04	ci right 4.321910e-04	k: 615	n:1540000
Cons ci ratio: 4.037988e-03	ci left: 3.788691e-01	ci right 3.804027e-01	k: 584639	n:1540000
KS ci ratio: 1.579097e-01	ci left: 3.684137e-04	ci right 4.321910e-04	k: 615	n:1540000
PTK7   1540000 perm   1244 sec   (1237 perm/sec)   p_kst 3.993506e-04   p_cons 3.796357e-01   p_joint 3.993506e-04

Joint ci ratio: 1.575266e-01	ci left: 3.678959e-04	ci right 4.314145e-04	k: 618	n:1550000
Cons ci ratio: 4.024574e-03	ci left: 3.789146e-01	ci right 3.804433e-01	k: 588502	n:1550000
KS ci ratio: 1.575266e-01	ci left: 3.678959e-04	ci right 4.314145e-04	k: 618	n:1550000
PTK7   1550000 perm   1258 sec   (1232 perm/sec)   p_kst 3.987097e-04   p_cons 3.796787e-01   p_joint 3.987097e-04

Joint ci ratio: 1.570201e-01	ci left: 3.680008e-04	ci right 4.313140e-04	k: 622	n:1560000
Cons ci ratio: 4.011571e-03	ci left: 3.789268e-01	ci right 3.804506e-01	k: 592314	n:1560000
KS ci ratio: 1.570201e-01	ci left: 3.680008e-04	ci right 4.313140e-04	k: 622	n:1560000
PTK7   1560000 perm   1272 sec   (1226 perm/sec)   p_kst 3.987179e-04   p_cons 3.796885e-01   p_joint 3.987179e-04

Joint ci ratio: 1.567687e-01	ci left: 3.668807e-04	ci right 4.298906e-04	k: 624	n:1570000
Cons ci ratio: 3.998758e-03	ci left: 3.789312e-01	ci right 3.804501e-01	k: 596114	n:1570000
KS ci ratio: 1.567687e-01	ci left: 3.668807e-04	ci right 4.298906e-04	k: 624	n:1570000
PTK7   1570000 perm   1286 sec   (1221 perm/sec)   p_kst 3.974522e-04   p_cons 3.796904e-01   p_joint 3.974522e-04

Joint ci ratio: 1.561453e-01	ci left: 3.675993e-04	ci right 4.304582e-04	k: 629	n:1580000
Cons ci ratio: 3.986024e-03	ci left: 3.789406e-01	ci right 3.804547e-01	k: 599922	n:1580000
KS ci ratio: 1.561453e-01	ci left: 3.675993e-04	ci right 4.304582e-04	k: 629	n:1580000
PTK7   1580000 perm   1300 sec   (1215 perm/sec)   p_kst 3.981013e-04   p_cons 3.796975e-01   p_joint 3.981013e-04

Joint ci ratio: 1.557749e-01	ci left: 3.671005e-04	ci right 4.297113e-04	k: 632	n:1590000
Cons ci ratio: 3.973172e-03	ci left: 3.789783e-01	ci right 3.804876e-01	k: 603775	n:1590000
KS ci ratio: 1.557749e-01	ci left: 3.671005e-04	ci right 4.297113e-04	k: 632	n:1590000
PTK7   1590000 perm   1315 sec   (1209 perm/sec)   p_kst 3.974843e-04   p_cons 3.797327e-01   p_joint 3.974843e-04

Joint ci ratio: 1.551633e-01	ci left: 3.678096e-04	ci right 4.302720e-04	k: 637	n:1600000
Cons ci ratio: 3.960660e-03	ci left: 3.789898e-01	ci right 3.804944e-01	k: 607587	n:1600000
KS ci ratio: 1.551633e-01	ci left: 3.678096e-04	ci right 4.302720e-04	k: 637	n:1600000
PTK7   1600000 perm   1329 sec   (1204 perm/sec)   p_kst 3.981250e-04   p_cons 3.797419e-01   p_joint 3.981250e-04

Joint ci ratio: 1.544387e-01	ci left: 3.691074e-04	ci right 4.314705e-04	k: 643	n:1610000
Cons ci ratio: 3.948676e-03	ci left: 3.789521e-01	ci right 3.804520e-01	k: 611320	n:1610000
KS ci ratio: 1.544387e-01	ci left: 3.691074e-04	ci right 4.314705e-04	k: 643	n:1610000
PTK7   1610000 perm   1344 sec   (1198 perm/sec)   p_kst 3.993789e-04   p_cons 3.797019e-01   p_joint 3.993789e-04

Joint ci ratio: 1.541995e-01	ci left: 3.680159e-04	ci right 4.300893e-04	k: 645	n:1620000
Cons ci ratio: 3.936434e-03	ci left: 3.789587e-01	ci right 3.804540e-01	k: 615124	n:1620000
KS ci ratio: 1.541995e-01	ci left: 3.680159e-04	ci right 4.300893e-04	k: 645	n:1620000
PTK7   1620000 perm   1358 sec   (1193 perm/sec)   p_kst 3.981481e-04   p_cons 3.797062e-01   p_joint 3.981481e-04

Joint ci ratio: 1.537243e-01	ci left: 3.681176e-04	ci right 4.299992e-04	k: 649	n:1630000
Cons ci ratio: 3.923901e-03	ci left: 3.790137e-01	ci right 3.805045e-01	k: 619007	n:1630000
KS ci ratio: 1.537243e-01	ci left: 3.681176e-04	ci right 4.299992e-04	k: 649	n:1630000
PTK7   1630000 perm   1373 sec   (1188 perm/sec)   p_kst 3.981595e-04   p_cons 3.797589e-01   p_joint 3.981595e-04

Joint ci ratio: 1.533709e-01	ci left: 3.676319e-04	ci right 4.292767e-04	k: 652	n:1640000
Cons ci ratio: 3.911922e-03	ci left: 3.790157e-01	ci right 3.805018e-01	k: 622804	n:1640000
KS ci ratio: 1.533709e-01	ci left: 3.676319e-04	ci right 4.292767e-04	k: 652	n:1640000
PTK7   1640000 perm   1387 sec   (1182 perm/sec)   p_kst 3.975610e-04   p_cons 3.797585e-01   p_joint 3.975610e-04

Joint ci ratio: 1.532537e-01	ci left: 3.659866e-04	ci right 4.273044e-04	k: 653	n:1650000
Cons ci ratio: 3.900434e-03	ci left: 3.789715e-01	ci right 3.804531e-01	k: 626525	n:1650000
KS ci ratio: 1.532537e-01	ci left: 3.659866e-04	ci right 4.273044e-04	k: 653	n:1650000
PTK7   1650000 perm   1402 sec   (1177 perm/sec)   p_kst 3.957576e-04   p_cons 3.797121e-01   p_joint 3.957576e-04

Joint ci ratio: 1.525554e-01	ci left: 3.672581e-04	ci right 4.284829e-04	k: 659	n:1660000
Cons ci ratio: 3.888709e-03	ci left: 3.789689e-01	ci right 3.804460e-01	k: 630314	n:1660000
KS ci ratio: 1.525554e-01	ci left: 3.672581e-04	ci right 4.284829e-04	k: 659	n:1660000
PTK7   1660000 perm   1418 sec   (1171 perm/sec)   p_kst 3.969880e-04   p_cons 3.797072e-01   p_joint 3.969880e-04

Joint ci ratio: 1.520952e-01	ci left: 3.673628e-04	ci right 4.284035e-04	k: 663	n:1670000
Cons ci ratio: 3.876945e-03	ci left: 3.789836e-01	ci right 3.804563e-01	k: 634132	n:1670000
KS ci ratio: 1.520952e-01	ci left: 3.673628e-04	ci right 4.284035e-04	k: 663	n:1670000
PTK7   1670000 perm   1435 sec   (1164 perm/sec)   p_kst 3.970060e-04   p_cons 3.797198e-01   p_joint 3.970060e-04

Joint ci ratio: 1.515257e-01	ci left: 3.680393e-04	ci right 4.289426e-04	k: 668	n:1680000
Cons ci ratio: 3.865532e-03	ci left: 3.789684e-01	ci right 3.804367e-01	k: 637900	n:1680000
KS ci ratio: 1.515257e-01	ci left: 3.680393e-04	ci right 4.289426e-04	k: 668	n:1680000
PTK7   1680000 perm   1450 sec   (1158 perm/sec)   p_kst 3.976190e-04   p_cons 3.797024e-01   p_joint 3.976190e-04

Joint ci ratio: 1.510748e-01	ci left: 3.681388e-04	ci right 4.288609e-04	k: 672	n:1690000
Cons ci ratio: 3.854277e-03	ci left: 3.789463e-01	ci right 3.804103e-01	k: 641656	n:1690000
KS ci ratio: 1.510748e-01	ci left: 3.681388e-04	ci right 4.288609e-04	k: 672	n:1690000
PTK7   1690000 perm   1465 sec   (1153 perm/sec)   p_kst 3.976331e-04   p_cons 3.796781e-01   p_joint 3.976331e-04

Joint ci ratio: 1.506278e-01	ci left: 3.682374e-04	ci right 4.287799e-04	k: 676	n:1700000
Cons ci ratio: 3.842909e-03	ci left: 3.789504e-01	ci right 3.804100e-01	k: 645456	n:1700000
KS ci ratio: 1.506278e-01	ci left: 3.682374e-04	ci right 4.287799e-04	k: 676	n:1700000
PTK7   1700000 perm   1480 sec   (1148 perm/sec)   p_kst 3.976471e-04   p_cons 3.796800e-01   p_joint 3.976471e-04

Joint ci ratio: 1.501848e-01	ci left: 3.683351e-04	ci right 4.286996e-04	k: 680	n:1710000
Cons ci ratio: 3.831498e-03	ci left: 3.789719e-01	ci right 3.804273e-01	k: 649286	n:1710000
KS ci ratio: 1.501848e-01	ci left: 3.683351e-04	ci right 4.286996e-04	k: 680	n:1710000
PTK7   1710000 perm   1496 sec   (1143 perm/sec)   p_kst 3.976608e-04   p_cons 3.796994e-01   p_joint 3.976608e-04

Joint ci ratio: 1.496364e-01	ci left: 3.689916e-04	ci right 4.292231e-04	k: 685	n:1720000
Cons ci ratio: 3.820264e-03	ci left: 3.789839e-01	ci right 3.804351e-01	k: 653100	n:1720000
KS ci ratio: 1.496364e-01	ci left: 3.689916e-04	ci right 4.292231e-04	k: 685	n:1720000
PTK7   1720000 perm   1511 sec   (1139 perm/sec)   p_kst 3.982558e-04   p_cons 3.797093e-01   p_joint 3.982558e-04

Joint ci ratio: 1.492020e-01	ci left: 3.690844e-04	ci right 4.291405e-04	k: 689	n:1730000
Cons ci ratio: 3.808987e-03	ci left: 3.790131e-01	ci right 3.804601e-01	k: 656944	n:1730000
KS ci ratio: 1.492020e-01	ci left: 3.690844e-04	ci right 4.291405e-04	k: 689	n:1730000
PTK7   1730000 perm   1526 sec   (1134 perm/sec)   p_kst 3.982659e-04   p_cons 3.797364e-01   p_joint 3.982659e-04

Joint ci ratio: 1.489864e-01	ci left: 3.680698e-04	ci right 4.278665e-04	k: 691	n:1740000
Cons ci ratio: 3.798213e-03	ci left: 3.789920e-01	ci right 3.804348e-01	k: 660701	n:1740000
KS ci ratio: 1.489864e-01	ci left: 3.680698e-04	ci right 4.278665e-04	k: 691	n:1740000
PTK7   1740000 perm   1541 sec   (1129 perm/sec)   p_kst 3.971264e-04   p_cons 3.797132e-01   p_joint 3.971264e-04

Joint ci ratio: 1.484510e-01	ci left: 3.687173e-04	ci right 4.283849e-04	k: 696	n:1750000
Cons ci ratio: 3.787360e-03	ci left: 3.789923e-01	ci right 3.804310e-01	k: 664495	n:1750000
KS ci ratio: 1.484510e-01	ci left: 3.687173e-04	ci right 4.283849e-04	k: 696	n:1750000
PTK7   1750000 perm   1557 sec   (1124 perm/sec)   p_kst 3.977143e-04   p_cons 3.797114e-01   p_joint 3.977143e-04

Joint ci ratio: 1.479213e-01	ci left: 3.693579e-04	ci right 4.288971e-04	k: 701	n:1760000
Cons ci ratio: 3.776558e-03	ci left: 3.789977e-01	ci right 3.804322e-01	k: 668298	n:1760000
KS ci ratio: 1.479213e-01	ci left: 3.693579e-04	ci right 4.288971e-04	k: 701	n:1760000
PTK7   1760000 perm   1573 sec   (1119 perm/sec)   p_kst 3.982955e-04   p_cons 3.797148e-01   p_joint 3.982955e-04

Joint ci ratio: 1.473973e-01	ci left: 3.699917e-04	ci right 4.294030e-04	k: 706	n:1770000
Cons ci ratio: 3.765925e-03	ci left: 3.789934e-01	ci right 3.804239e-01	k: 672084	n:1770000
KS ci ratio: 1.473973e-01	ci left: 3.699917e-04	ci right 4.294030e-04	k: 706	n:1770000
PTK7   1770000 perm   1589 sec   (1114 perm/sec)   p_kst 3.988701e-04   p_cons 3.797085e-01   p_joint 3.988701e-04

Joint ci ratio: 1.465702e-01	ci left: 3.722422e-04	ci right 4.316502e-04	k: 714	n:1780000
Cons ci ratio: 3.755064e-03	ci left: 3.790291e-01	ci right 3.804556e-01	k: 675941	n:1780000
KS ci ratio: 1.465702e-01	ci left: 3.722422e-04	ci right 4.316502e-04	k: 714	n:1780000
PTK7   1780000 perm   1604 sec   (1110 perm/sec)   p_kst 4.011236e-04   p_cons 3.797421e-01   p_joint 4.011236e-04

Joint ci ratio: 1.461619e-01	ci left: 3.723154e-04	ci right 4.315551e-04	k: 718	n:1790000
Cons ci ratio: 3.744247e-03	ci left: 3.790705e-01	ci right 3.804930e-01	k: 679809	n:1790000
KS ci ratio: 1.461619e-01	ci left: 3.723154e-04	ci right 4.315551e-04	k: 718	n:1790000
PTK7   1790000 perm   1620 sec   (1105 perm/sec)   p_kst 4.011173e-04   p_cons 3.797816e-01   p_joint 4.011173e-04

Joint ci ratio: 1.459591e-01	ci left: 3.713175e-04	ci right 4.303093e-04	k: 720	n:1800000
Cons ci ratio: 3.733791e-03	ci left: 3.790776e-01	ci right 3.804961e-01	k: 683616	n:1800000
KS ci ratio: 1.459591e-01	ci left: 3.713175e-04	ci right 4.303093e-04	k: 720	n:1800000
PTK7   1800000 perm   1636 sec   (1101 perm/sec)   p_kst 4.000000e-04   p_cons 3.797867e-01   p_joint 4.000000e-04

Joint ci ratio: 1.455559e-01	ci left: 3.713954e-04	ci right 4.302224e-04	k: 724	n:1810000
Cons ci ratio: 3.723466e-03	ci left: 3.790791e-01	ci right 3.804937e-01	k: 687413	n:1810000
KS ci ratio: 1.455559e-01	ci left: 3.713954e-04	ci right 4.302224e-04	k: 724	n:1810000
PTK7   1810000 perm   1652 sec   (1096 perm/sec)   p_kst 4.000000e-04   p_cons 3.797862e-01   p_joint 4.000000e-04

Joint ci ratio: 1.450566e-01	ci left: 3.720021e-04	ci right 4.307056e-04	k: 729	n:1820000
Cons ci ratio: 3.713192e-03	ci left: 3.790849e-01	ci right 3.804957e-01	k: 691218	n:1820000
KS ci ratio: 1.450566e-01	ci left: 3.720021e-04	ci right 4.307056e-04	k: 729	n:1820000
PTK7   1820000 perm   1668 sec   (1091 perm/sec)   p_kst 4.005495e-04   p_cons 3.797901e-01   p_joint 4.005495e-04

Joint ci ratio: 1.448583e-01	ci left: 3.710226e-04	ci right 4.294845e-04	k: 731	n:1830000
Cons ci ratio: 3.702925e-03	ci left: 3.791006e-01	ci right 3.805075e-01	k: 695041	n:1830000
KS ci ratio: 1.448583e-01	ci left: 3.710226e-04	ci right 4.294845e-04	k: 731	n:1830000
PTK7   1830000 perm   1684 sec   (1086 perm/sec)   p_kst 3.994536e-04   p_cons 3.798038e-01   p_joint 3.994536e-04

Joint ci ratio: 1.442682e-01	ci left: 3.721491e-04	ci right 4.305291e-04	k: 737	n:1840000
Cons ci ratio: 3.692628e-03	ci left: 3.791307e-01	ci right 3.805338e-01	k: 698891	n:1840000
KS ci ratio: 1.442682e-01	ci left: 3.721491e-04	ci right 4.305291e-04	k: 737	n:1840000
PTK7   1840000 perm   1702 sec   (1081 perm/sec)   p_kst 4.005435e-04   p_cons 3.798321e-01   p_joint 4.005435e-04

Joint ci ratio: 1.439759e-01	ci left: 3.717006e-04	ci right 4.298820e-04	k: 740	n:1850000
Cons ci ratio: 3.682572e-03	ci left: 3.791405e-01	ci right 3.805398e-01	k: 702704	n:1850000
KS ci ratio: 1.439759e-01	ci left: 3.717006e-04	ci right 4.298820e-04	k: 740	n:1850000
PTK7   1850000 perm   1719 sec   (1076 perm/sec)   p_kst 4.000000e-04   p_cons 3.798400e-01   p_joint 4.000000e-04

Joint ci ratio: 1.437821e-01	ci left: 3.707388e-04	ci right 4.286848e-04	k: 742	n:1860000
Cons ci ratio: 3.672954e-03	ci left: 3.791046e-01	ci right 3.805001e-01	k: 706432	n:1860000
KS ci ratio: 1.437821e-01	ci left: 3.707388e-04	ci right 4.286848e-04	k: 742	n:1860000
PTK7   1860000 perm   1736 sec   (1072 perm/sec)   p_kst 3.989247e-04   p_cons 3.798022e-01   p_joint 3.989247e-04

Joint ci ratio: 1.434927e-01	ci left: 3.703028e-04	ci right 4.280542e-04	k: 745	n:1870000
Cons ci ratio: 3.662929e-03	ci left: 3.791310e-01	ci right 3.805228e-01	k: 710276	n:1870000
KS ci ratio: 1.434927e-01	ci left: 3.703028e-04	ci right 4.280542e-04	k: 745	n:1870000
PTK7   1870000 perm   1752 sec   (1067 perm/sec)   p_kst 3.983957e-04   p_cons 3.798267e-01   p_joint 3.983957e-04

Joint ci ratio: 1.433008e-01	ci left: 3.693588e-04	ci right 4.268793e-04	k: 747	n:1880000
Cons ci ratio: 3.653056e-03	ci left: 3.791482e-01	ci right 3.805363e-01	k: 714103	n:1880000
KS ci ratio: 1.433008e-01	ci left: 3.693588e-04	ci right 4.268793e-04	k: 747	n:1880000
PTK7   1880000 perm   1768 sec   (1063 perm/sec)   p_kst 3.973404e-04   p_cons 3.798420e-01   p_joint 3.973404e-04

Joint ci ratio: 1.430144e-01	ci left: 3.689350e-04	ci right 4.262648e-04	k: 750	n:1890000
Cons ci ratio: 3.643295e-03	ci left: 3.791609e-01	ci right 3.805453e-01	k: 717922	n:1890000
KS ci ratio: 1.430144e-01	ci left: 3.689350e-04	ci right 4.262648e-04	k: 750	n:1890000
PTK7   1890000 perm   1785 sec   (1059 perm/sec)   p_kst 3.968254e-04   p_cons 3.798529e-01   p_joint 3.968254e-04

Joint ci ratio: 1.428244e-01	ci left: 3.680082e-04	ci right 4.251116e-04	k: 752	n:1900000
Cons ci ratio: 3.633725e-03	ci left: 3.791587e-01	ci right 3.805395e-01	k: 721713	n:1900000
KS ci ratio: 1.428244e-01	ci left: 3.680082e-04	ci right 4.251116e-04	k: 752	n:1900000
PTK7   1900000 perm   1801 sec   (1055 perm/sec)   p_kst 3.957895e-04   p_cons 3.798489e-01   p_joint 3.957895e-04

Joint ci ratio: 1.426352e-01	ci left: 3.670911e-04	ci right 4.239704e-04	k: 754	n:1910000
Cons ci ratio: 3.624468e-03	ci left: 3.791258e-01	ci right 3.805029e-01	k: 725445	n:1910000
KS ci ratio: 1.426352e-01	ci left: 3.670911e-04	ci right 4.239704e-04	k: 754	n:1910000
PTK7   1910000 perm   1817 sec   (1051 perm/sec)   p_kst 3.947644e-04   p_cons 3.798141e-01   p_joint 3.947644e-04

Joint ci ratio: 1.423527e-01	ci left: 3.666860e-04	ci right 4.233804e-04	k: 757	n:1920000
Cons ci ratio: 3.614786e-03	ci left: 3.791577e-01	ci right 3.805312e-01	k: 729301	n:1920000
KS ci ratio: 1.423527e-01	ci left: 3.666860e-04	ci right 4.233804e-04	k: 757	n:1920000
PTK7   1920000 perm   1835 sec   (1047 perm/sec)   p_kst 3.942708e-04   p_cons 3.798443e-01   p_joint 3.942708e-04

Joint ci ratio: 1.419785e-01	ci left: 3.667849e-04	ci right 4.233329e-04	k: 761	n:1930000
Cons ci ratio: 3.605296e-03	ci left: 3.791742e-01	ci right 3.805442e-01	k: 733128	n:1930000
KS ci ratio: 1.419785e-01	ci left: 3.667849e-04	ci right 4.233329e-04	k: 761	n:1930000
PTK7   1930000 perm   1851 sec   (1042 perm/sec)   p_kst 3.943005e-04   p_cons 3.798591e-01   p_joint 3.943005e-04

Joint ci ratio: 1.417927e-01	ci left: 3.658886e-04	ci right 4.222183e-04	k: 763	n:1940000
Cons ci ratio: 3.596148e-03	ci left: 3.791556e-01	ci right 3.805221e-01	k: 736887	n:1940000
KS ci ratio: 1.417927e-01	ci left: 3.658886e-04	ci right 4.222183e-04	k: 763	n:1940000
PTK7   1940000 perm   1868 sec   (1038 perm/sec)   p_kst 3.932990e-04   p_cons 3.798387e-01   p_joint 3.932990e-04

Joint ci ratio: 1.414229e-01	ci left: 3.659908e-04	ci right 4.221770e-04	k: 767	n:1950000
Cons ci ratio: 3.587198e-03	ci left: 3.791203e-01	ci right 3.804832e-01	k: 740613	n:1950000
KS ci ratio: 1.414229e-01	ci left: 3.659908e-04	ci right 4.221770e-04	k: 767	n:1950000
PTK7   1950000 perm   1885 sec   (1034 perm/sec)   p_kst 3.933333e-04   p_cons 3.798015e-01   p_joint 3.933333e-04

Joint ci ratio: 1.409648e-01	ci left: 3.665844e-04	ci right 4.226641e-04	k: 772	n:1960000
Cons ci ratio: 3.578310e-03	ci left: 3.790858e-01	ci right 3.804452e-01	k: 744340	n:1960000
KS ci ratio: 1.409648e-01	ci left: 3.665844e-04	ci right 4.226641e-04	k: 772	n:1960000
PTK7   1960000 perm   1902 sec   (1031 perm/sec)   p_kst 3.938776e-04   p_cons 3.797653e-01   p_joint 3.938776e-04

Joint ci ratio: 1.406920e-01	ci left: 3.661928e-04	ci right 4.220950e-04	k: 775	n:1970000
Cons ci ratio: 3.569050e-03	ci left: 3.791095e-01	ci right 3.804655e-01	k: 748181	n:1970000
KS ci ratio: 1.406920e-01	ci left: 3.661928e-04	ci right 4.220950e-04	k: 775	n:1970000
PTK7   1970000 perm   1919 sec   (1027 perm/sec)   p_kst 3.934010e-04   p_cons 3.797873e-01   p_joint 3.934010e-04

Joint ci ratio: 1.403308e-01	ci left: 3.662925e-04	ci right 4.220544e-04	k: 779	n:1980000
Cons ci ratio: 3.559659e-03	ci left: 3.791598e-01	ci right 3.805123e-01	k: 752075	n:1980000
KS ci ratio: 1.403308e-01	ci left: 3.662925e-04	ci right 4.220544e-04	k: 779	n:1980000
PTK7   1980000 perm   1936 sec   (1023 perm/sec)   p_kst 3.934343e-04   p_cons 3.798359e-01   p_joint 3.934343e-04

Joint ci ratio: 1.401513e-01	ci left: 3.654216e-04	ci right 4.209738e-04	k: 781	n:1990000
Cons ci ratio: 3.550978e-03	ci left: 3.791251e-01	ci right 3.804742e-01	k: 755801	n:1990000
KS ci ratio: 1.401513e-01	ci left: 3.654216e-04	ci right 4.209738e-04	k: 781	n:1990000
PTK7   1990000 perm   1954 sec   (1019 perm/sec)   p_kst 3.924623e-04   p_cons 3.797995e-01   p_joint 3.924623e-04

Joint ci ratio: 1.398833e-01	ci left: 3.650419e-04	ci right 4.204215e-04	k: 784	n:2000000
Cons ci ratio: 3.542100e-03	ci left: 3.791253e-01	ci right 3.804711e-01	k: 759596	n:2000000
KS ci ratio: 1.398833e-01	ci left: 3.650419e-04	ci right 4.204215e-04	k: 784	n:2000000
PTK7   2000000 perm   1971 sec   (1015 perm/sec)   p_kst 3.920000e-04   p_cons 3.797980e-01   p_joint 3.920000e-04

Joint ci ratio: 1.396168e-01	ci left: 3.646662e-04	ci right 4.198745e-04	k: 787	n:2010000
Cons ci ratio: 3.533435e-03	ci left: 3.791061e-01	ci right 3.804485e-01	k: 763352	n:2010000
KS ci ratio: 1.396168e-01	ci left: 3.646662e-04	ci right 4.198745e-04	k: 787	n:2010000
PTK7   2010000 perm   1988 sec   (1011 perm/sec)   p_kst 3.915423e-04   p_cons 3.797771e-01   p_joint 3.915423e-04

Joint ci ratio: 1.395284e-01	ci left: 3.633386e-04	ci right 4.183083e-04	k: 788	n:2020000
Cons ci ratio: 3.524666e-03	ci left: 3.791094e-01	ci right 3.804484e-01	k: 767153	n:2020000
KS ci ratio: 1.395284e-01	ci left: 3.633386e-04	ci right 4.183083e-04	k: 788	n:2020000
PTK7   2020000 perm   2006 sec   (1007 perm/sec)   p_kst 3.900990e-04   p_cons 3.797787e-01   p_joint 3.900990e-04

Joint ci ratio: 1.394402e-01	ci left: 3.620242e-04	ci right 4.167575e-04	k: 789	n:2030000
Cons ci ratio: 3.516172e-03	ci left: 3.790845e-01	ci right 3.804203e-01	k: 770897	n:2030000
KS ci ratio: 1.394402e-01	ci left: 3.620242e-04	ci right 4.167575e-04	k: 789	n:2030000
PTK7   2030000 perm   2023 sec   (1003 perm/sec)   p_kst 3.886700e-04   p_cons 3.797522e-01   p_joint 3.886700e-04

Joint ci ratio: 1.392641e-01	ci left: 3.611958e-04	ci right 4.157291e-04	k: 791	n:2040000
Cons ci ratio: 3.507844e-03	ci left: 3.790457e-01	ci right 3.803782e-01	k: 774612	n:2040000
KS ci ratio: 1.392641e-01	ci left: 3.611958e-04	ci right 4.157291e-04	k: 791	n:2040000
PTK7   2040000 perm   2041 sec   (1000 perm/sec)   p_kst 3.877451e-04   p_cons 3.797118e-01   p_joint 3.877451e-04

Joint ci ratio: 1.391763e-01	ci left: 3.599046e-04	ci right 4.142060e-04	k: 792	n:2050000
Cons ci ratio: 3.499163e-03	ci left: 3.790629e-01	ci right 3.803921e-01	k: 778441	n:2050000
KS ci ratio: 1.391763e-01	ci left: 3.599046e-04	ci right 4.142060e-04	k: 792	n:2050000
PTK7   2050000 perm   2058 sec   (996 perm/sec)   p_kst 3.863415e-04   p_cons 3.797273e-01   p_joint 3.863415e-04

Joint ci ratio: 1.389138e-01	ci left: 3.595632e-04	ci right 4.137022e-04	k: 795	n:2060000
Cons ci ratio: 3.490840e-03	ci left: 3.790401e-01	ci right 3.803661e-01	k: 782188	n:2060000
KS ci ratio: 1.389138e-01	ci left: 3.595632e-04	ci right 4.137022e-04	k: 795	n:2060000
PTK7   2060000 perm   2076 sec   (992 perm/sec)   p_kst 3.859223e-04   p_cons 3.797029e-01   p_joint 3.859223e-04

Joint ci ratio: 1.384796e-01	ci left: 3.601578e-04	ci right 4.142028e-04	k: 800	n:2070000
Cons ci ratio: 3.482219e-03	ci left: 3.790658e-01	ci right 3.803886e-01	k: 786035	n:2070000
KS ci ratio: 1.384796e-01	ci left: 3.601578e-04	ci right 4.142028e-04	k: 800	n:2070000
PTK7   2070000 perm   2093 sec   (989 perm/sec)   p_kst 3.864734e-04   p_cons 3.797271e-01   p_joint 3.864734e-04

Joint ci ratio: 1.378783e-01	ci left: 3.616753e-04	ci right 4.156931e-04	k: 807	n:2080000
Cons ci ratio: 3.473574e-03	ci left: 3.791034e-01	ci right 3.804229e-01	k: 789907	n:2080000
KS ci ratio: 1.378783e-01	ci left: 3.616753e-04	ci right 4.156931e-04	k: 807	n:2080000
PTK7   2080000 perm   2111 sec   (985 perm/sec)   p_kst 3.879808e-04   p_cons 3.797630e-01   p_joint 3.879808e-04

Joint ci ratio: 1.371166e-01	ci left: 3.641029e-04	ci right 4.181584e-04	k: 816	n:2090000
Cons ci ratio: 3.465411e-03	ci left: 3.790836e-01	ci right 3.804000e-01	k: 793660	n:2090000
KS ci ratio: 1.371166e-01	ci left: 3.641029e-04	ci right 4.181584e-04	k: 816	n:2090000
PTK7   2090000 perm   2129 sec   (982 perm/sec)   p_kst 3.904306e-04   p_cons 3.797416e-01   p_joint 3.904306e-04

Joint ci ratio: 1.363674e-01	ci left: 3.665083e-04	ci right 4.205993e-04	k: 825	n:2100000
Cons ci ratio: 3.457172e-03	ci left: 3.790821e-01	ci right 3.803954e-01	k: 797451	n:2100000
KS ci ratio: 1.363674e-01	ci left: 3.665083e-04	ci right 4.205993e-04	k: 825	n:2100000
PTK7   2100000 perm   2148 sec   (978 perm/sec)   p_kst 3.928571e-04   p_cons 3.797386e-01   p_joint 3.928571e-04

Joint ci ratio: 1.362850e-01	ci left: 3.652290e-04	ci right 4.190961e-04	k: 826	n:2110000
Cons ci ratio: 3.448611e-03	ci left: 3.791327e-01	ci right 3.804429e-01	k: 801352	n:2110000
KS ci ratio: 1.362850e-01	ci left: 3.652290e-04	ci right 4.190961e-04	k: 826	n:2110000
PTK7   2110000 perm   2166 sec   (974 perm/sec)   p_kst 3.914692e-04   p_cons 3.797877e-01   p_joint 3.914692e-04

Joint ci ratio: 1.362028e-01	ci left: 3.639618e-04	ci right 4.176070e-04	k: 827	n:2120000
Cons ci ratio: 3.440457e-03	ci left: 3.791358e-01	ci right 3.804429e-01	k: 805153	n:2120000
KS ci ratio: 1.362028e-01	ci left: 3.639618e-04	ci right 4.176070e-04	k: 827	n:2120000
PTK7   2120000 perm   2184 sec   (971 perm/sec)   p_kst 3.900943e-04   p_cons 3.797892e-01   p_joint 3.900943e-04

Joint ci ratio: 1.360386e-01	ci left: 3.631601e-04	ci right 4.166173e-04	k: 829	n:2130000
Cons ci ratio: 3.432385e-03	ci left: 3.791355e-01	ci right 3.804395e-01	k: 808947	n:2130000
KS ci ratio: 1.360386e-01	ci left: 3.631601e-04	ci right 4.166173e-04	k: 829	n:2130000
PTK7   2130000 perm   2203 sec   (967 perm/sec)   p_kst 3.892019e-04   p_cons 3.797873e-01   p_joint 3.892019e-04

Joint ci ratio: 1.356307e-01	ci left: 3.637201e-04	ci right 4.170863e-04	k: 834	n:2140000
Cons ci ratio: 3.424196e-03	ci left: 3.791590e-01	ci right 3.804600e-01	k: 812792	n:2140000
KS ci ratio: 1.356307e-01	ci left: 3.637201e-04	ci right 4.170863e-04	k: 834	n:2140000
PTK7   2140000 perm   2221 sec   (963 perm/sec)   p_kst 3.897196e-04   p_cons 3.798093e-01   p_joint 3.897196e-04

Joint ci ratio: 1.347458e-01	ci left: 3.669717e-04	ci right 4.204356e-04	k: 845	n:2150000
Cons ci ratio: 3.416051e-03	ci left: 3.791842e-01	ci right 3.804822e-01	k: 816641	n:2150000
KS ci ratio: 1.347458e-01	ci left: 3.669717e-04	ci right 4.204356e-04	k: 845	n:2150000
PTK7   2150000 perm   2240 sec   (960 perm/sec)   p_kst 3.930233e-04   p_cons 3.798330e-01   p_joint 3.930233e-04

Joint ci ratio: 1.343494e-01	ci left: 3.675096e-04	ci right 4.208818e-04	k: 850	n:2160000
Cons ci ratio: 3.408206e-03	ci left: 3.791758e-01	ci right 3.804708e-01	k: 820418	n:2160000
KS ci ratio: 1.343494e-01	ci left: 3.675096e-04	ci right 4.208818e-04	k: 850	n:2160000
PTK7   2160000 perm   2259 sec   (956 perm/sec)   p_kst 3.935185e-04   p_cons 3.798231e-01   p_joint 3.935185e-04

Joint ci ratio: 1.342706e-01	ci left: 3.662614e-04	ci right 4.194185e-04	k: 851	n:2170000
Cons ci ratio: 3.400238e-03	ci left: 3.791920e-01	ci right 3.804839e-01	k: 824248	n:2170000
KS ci ratio: 1.342706e-01	ci left: 3.662614e-04	ci right 4.194185e-04	k: 851	n:2170000
PTK7   2170000 perm   2277 sec   (953 perm/sec)   p_kst 3.921659e-04   p_cons 3.798378e-01   p_joint 3.921659e-04

Joint ci ratio: 1.334893e-01	ci left: 3.690148e-04	ci right 4.222353e-04	k: 861	n:2180000
Cons ci ratio: 3.392660e-03	ci left: 3.791616e-01	ci right 3.804506e-01	k: 827977	n:2180000
KS ci ratio: 1.334893e-01	ci left: 3.690148e-04	ci right 4.222353e-04	k: 861	n:2180000
PTK7   2180000 perm   2296 sec   (949 perm/sec)   p_kst 3.949541e-04   p_cons 3.798060e-01   p_joint 3.949541e-04

Joint ci ratio: 1.333348e-01	ci left: 3.682126e-04	ci right 4.212510e-04	k: 863	n:2190000
Cons ci ratio: 3.384909e-03	ci left: 3.791626e-01	ci right 3.804487e-01	k: 831774	n:2190000
KS ci ratio: 1.333348e-01	ci left: 3.682126e-04	ci right 4.212510e-04	k: 863	n:2190000
PTK7   2190000 perm   2315 sec   (946 perm/sec)   p_kst 3.940639e-04   p_cons 3.798055e-01   p_joint 3.940639e-04

Joint ci ratio: 1.329506e-01	ci left: 3.687359e-04	ci right 4.216846e-04	k: 868	n:2200000
Cons ci ratio: 3.376960e-03	ci left: 3.791986e-01	ci right 3.804817e-01	k: 835648	n:2200000
KS ci ratio: 1.329506e-01	ci left: 3.687359e-04	ci right 4.216846e-04	k: 868	n:2200000
PTK7   2200000 perm   2334 sec   (943 perm/sec)   p_kst 3.945455e-04   p_cons 3.798400e-01   p_joint 3.945455e-04

Joint ci ratio: 1.327217e-01	ci left: 3.683798e-04	ci right 4.211790e-04	k: 871	n:2210000
Cons ci ratio: 3.369267e-03	ci left: 3.792062e-01	ci right 3.804864e-01	k: 839460	n:2210000
KS ci ratio: 1.327217e-01	ci left: 3.683798e-04	ci right 4.211790e-04	k: 871	n:2210000
PTK7   2210000 perm   2354 sec   (939 perm/sec)   p_kst 3.941176e-04   p_cons 3.798462e-01   p_joint 3.941176e-04

Joint ci ratio: 1.326458e-01	ci left: 3.671559e-04	ci right 4.197473e-04	k: 872	n:2220000
Cons ci ratio: 3.361858e-03	ci left: 3.791813e-01	ci right 3.804586e-01	k: 843200	n:2220000
KS ci ratio: 1.326458e-01	ci left: 3.671559e-04	ci right 4.197473e-04	k: 872	n:2220000
PTK7   2220000 perm   2372 sec   (936 perm/sec)   p_kst 3.927928e-04   p_cons 3.798198e-01   p_joint 3.927928e-04

Joint ci ratio: 1.323429e-01	ci left: 3.672437e-04	ci right 4.197181e-04	k: 876	n:2230000
Cons ci ratio: 3.354328e-03	ci left: 3.791804e-01	ci right 3.804549e-01	k: 846993	n:2230000
KS ci ratio: 1.323429e-01	ci left: 3.672437e-04	ci right 4.197181e-04	k: 876	n:2230000
PTK7   2230000 perm   2391 sec   (932 perm/sec)   p_kst 3.928251e-04   p_cons 3.798175e-01   p_joint 3.928251e-04

Joint ci ratio: 1.321923e-01	ci left: 3.664676e-04	ci right 4.187668e-04	k: 878	n:2240000
Cons ci ratio: 3.346957e-03	ci left: 3.791644e-01	ci right 3.804360e-01	k: 850752	n:2240000
KS ci ratio: 1.321923e-01	ci left: 3.664676e-04	ci right 4.187668e-04	k: 878	n:2240000
PTK7   2240000 perm   2410 sec   (929 perm/sec)   p_kst 3.919643e-04   p_cons 3.798000e-01   p_joint 3.919643e-04

Joint ci ratio: 1.315947e-01	ci left: 3.682771e-04	ci right 4.205784e-04	k: 886	n:2250000
Cons ci ratio: 3.339208e-03	ci left: 3.792084e-01	ci right 3.804772e-01	k: 854646	n:2250000
KS ci ratio: 1.315947e-01	ci left: 3.682771e-04	ci right 4.205784e-04	k: 886	n:2250000
PTK7   2250000 perm   2429 sec   (926 perm/sec)   p_kst 3.937778e-04   p_cons 3.798427e-01   p_joint 3.937778e-04

Joint ci ratio: 1.313728e-01	ci left: 3.679313e-04	ci right 4.200885e-04	k: 889	n:2260000
Cons ci ratio: 3.331707e-03	ci left: 3.792247e-01	ci right 3.804907e-01	k: 858478	n:2260000
KS ci ratio: 1.313728e-01	ci left: 3.679313e-04	ci right 4.200885e-04	k: 889	n:2260000
PTK7   2260000 perm   2449 sec   (923 perm/sec)   p_kst 3.933628e-04   p_cons 3.798575e-01   p_joint 3.933628e-04

Joint ci ratio: 1.312255e-01	ci left: 3.671626e-04	ci right 4.191479e-04	k: 891	n:2270000
Cons ci ratio: 3.324384e-03	ci left: 3.792227e-01	ci right 3.804859e-01	k: 862269	n:2270000
KS ci ratio: 1.312255e-01	ci left: 3.671626e-04	ci right 4.191479e-04	k: 891	n:2270000
PTK7   2270000 perm   2469 sec   (920 perm/sec)   p_kst 3.925110e-04   p_cons 3.798542e-01   p_joint 3.925110e-04

Joint ci ratio: 1.310054e-01	ci left: 3.668248e-04	ci right 4.186684e-04	k: 894	n:2280000
Cons ci ratio: 3.317177e-03	ci left: 3.792112e-01	ci right 3.804716e-01	k: 866038	n:2280000
KS ci ratio: 1.310054e-01	ci left: 3.668248e-04	ci right 4.186684e-04	k: 894	n:2280000
PTK7   2280000 perm   2488 sec   (916 perm/sec)   p_kst 3.921053e-04   p_cons 3.798412e-01   p_joint 3.921053e-04

Joint ci ratio: 1.307864e-01	ci left: 3.664901e-04	ci right 4.181931e-04	k: 897	n:2290000
Cons ci ratio: 3.309937e-03	ci left: 3.792111e-01	ci right 3.804687e-01	k: 869833	n:2290000
KS ci ratio: 1.307864e-01	ci left: 3.664901e-04	ci right 4.181931e-04	k: 897	n:2290000
PTK7   2290000 perm   2507 sec   (913 perm/sec)   p_kst 3.917031e-04   p_cons 3.798397e-01   p_joint 3.917031e-04

Joint ci ratio: 1.305685e-01	ci left: 3.661584e-04	ci right 4.177218e-04	k: 900	n:2300000
Cons ci ratio: 3.302570e-03	ci left: 3.792357e-01	ci right 3.804907e-01	k: 873685	n:2300000
KS ci ratio: 1.305685e-01	ci left: 3.661584e-04	ci right 4.177218e-04	k: 900	n:2300000
PTK7   2300000 perm   2527 sec   (910 perm/sec)   p_kst 3.913043e-04   p_cons 3.798630e-01   p_joint 3.913043e-04

Joint ci ratio: 1.304962e-01	ci left: 3.649920e-04	ci right 4.163606e-04	k: 901	n:2310000
Cons ci ratio: 3.295449e-03	ci left: 3.792321e-01	ci right 3.804843e-01	k: 877472	n:2310000
KS ci ratio: 1.304962e-01	ci left: 3.649920e-04	ci right 4.163606e-04	k: 901	n:2310000
PTK7   2310000 perm   2547 sec   (907 perm/sec)   p_kst 3.900433e-04   p_cons 3.798580e-01   p_joint 3.900433e-04

Joint ci ratio: 1.302798e-01	ci left: 3.646697e-04	ci right 4.159012e-04	k: 904	n:2320000
Cons ci ratio: 3.288534e-03	ci left: 3.792056e-01	ci right 3.804551e-01	k: 881206	n:2320000
KS ci ratio: 1.302798e-01	ci left: 3.646697e-04	ci right 4.159012e-04	k: 904	n:2320000
PTK7   2320000 perm   2566 sec   (904 perm/sec)   p_kst 3.896552e-04   p_cons 3.798302e-01   p_joint 3.896552e-04

Joint ci ratio: 1.299213e-01	ci left: 3.651807e-04	ci right 4.163319e-04	k: 909	n:2330000
Cons ci ratio: 3.281506e-03	ci left: 3.792016e-01	ci right 3.804484e-01	k: 884992	n:2330000
KS ci ratio: 1.299213e-01	ci left: 3.651807e-04	ci right 4.163319e-04	k: 909	n:2330000
PTK7   2330000 perm   2586 sec   (901 perm/sec)   p_kst 3.901288e-04   p_cons 3.798249e-01   p_joint 3.901288e-04

Joint ci ratio: 1.294244e-01	ci left: 3.665145e-04	ci right 4.176411e-04	k: 916	n:2340000
Cons ci ratio: 3.274621e-03	ci left: 3.791836e-01	ci right 3.804278e-01	k: 888745	n:2340000
KS ci ratio: 1.294244e-01	ci left: 3.665145e-04	ci right 4.176411e-04	k: 916	n:2340000
PTK7   2340000 perm   2606 sec   (898 perm/sec)   p_kst 3.914530e-04   p_cons 3.798056e-01   p_joint 3.914530e-04

Joint ci ratio: 1.291431e-01	ci left: 3.666020e-04	ci right 4.176211e-04	k: 920	n:2350000
Cons ci ratio: 3.267759e-03	ci left: 3.791688e-01	ci right 3.804102e-01	k: 892505	n:2350000
KS ci ratio: 1.291431e-01	ci left: 3.666020e-04	ci right 4.176211e-04	k: 920	n:2350000
PTK7   2350000 perm   2626 sec   (895 perm/sec)   p_kst 3.914894e-04   p_cons 3.797894e-01   p_joint 3.914894e-04

Joint ci ratio: 1.288635e-01	ci left: 3.666888e-04	ci right 4.176011e-04	k: 924	n:2360000
Cons ci ratio: 3.260637e-03	ci left: 3.791977e-01	ci right 3.804365e-01	k: 896368	n:2360000
KS ci ratio: 1.288635e-01	ci left: 3.666888e-04	ci right 4.176011e-04	k: 924	n:2360000
PTK7   2360000 perm   2647 sec   (892 perm/sec)   p_kst 3.915254e-04   p_cons 3.798169e-01   p_joint 3.915254e-04

Joint ci ratio: 1.282410e-01	ci left: 3.688170e-04	ci right 4.197585e-04	k: 933	n:2370000
Cons ci ratio: 3.253667e-03	ci left: 3.792111e-01	ci right 3.804474e-01	k: 900195	n:2370000
KS ci ratio: 1.282410e-01	ci left: 3.688170e-04	ci right 4.197585e-04	k: 933	n:2370000
PTK7   2370000 perm   2670 sec   (887 perm/sec)   p_kst 3.936709e-04   p_cons 3.798291e-01   p_joint 3.936709e-04

Joint ci ratio: 1.281040e-01	ci left: 3.680807e-04	ci right 4.188621e-04	k: 935	n:2380000
Cons ci ratio: 3.246918e-03	ci left: 3.791989e-01	ci right 3.804325e-01	k: 903961	n:2380000
KS ci ratio: 1.281040e-01	ci left: 3.680807e-04	ci right 4.188621e-04	k: 935	n:2380000
PTK7   2380000 perm   2691 sec   (884 perm/sec)   p_kst 3.928571e-04   p_cons 3.798155e-01   p_joint 3.928571e-04

Joint ci ratio: 1.278311e-01	ci left: 3.681607e-04	ci right 4.188368e-04	k: 939	n:2390000
Cons ci ratio: 3.240018e-03	ci left: 3.792147e-01	ci right 3.804458e-01	k: 907794	n:2390000
KS ci ratio: 1.278311e-01	ci left: 3.681607e-04	ci right 4.188368e-04	k: 939	n:2390000
PTK7   2390000 perm   2711 sec   (882 perm/sec)   p_kst 3.928870e-04   p_cons 3.798301e-01   p_joint 3.928870e-04

Joint ci ratio: 1.272905e-01	ci left: 3.698537e-04	ci right 4.205312e-04	k: 947	n:2400000
Cons ci ratio: 3.233356e-03	ci left: 3.792022e-01	ci right 3.804306e-01	k: 911559	n:2400000
KS ci ratio: 1.272905e-01	ci left: 3.698537e-04	ci right 4.205312e-04	k: 947	n:2400000
PTK7   2400000 perm   2731 sec   (879 perm/sec)   p_kst 3.945833e-04   p_cons 3.798163e-01   p_joint 3.945833e-04

Joint ci ratio: 1.269561e-01	ci left: 3.703277e-04	ci right 4.209269e-04	k: 952	n:2410000
Cons ci ratio: 3.226638e-03	ci left: 3.792038e-01	ci right 3.804297e-01	k: 915358	n:2410000
KS ci ratio: 1.269561e-01	ci left: 3.703277e-04	ci right 4.209269e-04	k: 952	n:2410000
PTK7   2410000 perm   2752 sec   (876 perm/sec)   p_kst 3.950207e-04   p_cons 3.798166e-01   p_joint 3.950207e-04

Joint ci ratio: 1.268232e-01	ci left: 3.695976e-04	ci right 4.200402e-04	k: 954	n:2420000
Cons ci ratio: 3.220019e-03	ci left: 3.791971e-01	ci right 3.804205e-01	k: 919137	n:2420000
KS ci ratio: 1.268232e-01	ci left: 3.695976e-04	ci right 4.200402e-04	k: 954	n:2420000
PTK7   2420000 perm   2773 sec   (873 perm/sec)   p_kst 3.942149e-04   p_cons 3.798087e-01   p_joint 3.942149e-04

Joint ci ratio: 1.263608e-01	ci left: 3.708661e-04	ci right 4.212835e-04	k: 961	n:2430000
Cons ci ratio: 3.213364e-03	ci left: 3.792016e-01	ci right 3.804225e-01	k: 922943	n:2430000
KS ci ratio: 1.263608e-01	ci left: 3.708661e-04	ci right 4.212835e-04	k: 961	n:2430000
PTK7   2430000 perm   2794 sec   (870 perm/sec)   p_kst 3.954733e-04   p_cons 3.798119e-01   p_joint 3.954733e-04

Joint ci ratio: 1.261643e-01	ci left: 3.705368e-04	ci right 4.208252e-04	k: 964	n:2440000
Cons ci ratio: 3.206695e-03	ci left: 3.792143e-01	ci right 3.804327e-01	k: 926769	n:2440000
KS ci ratio: 1.261643e-01	ci left: 3.705368e-04	ci right 4.208252e-04	k: 964	n:2440000
PTK7   2440000 perm   2815 sec   (867 perm/sec)   p_kst 3.950820e-04   p_cons 3.798234e-01   p_joint 3.950820e-04

Joint ci ratio: 1.260338e-01	ci left: 3.698150e-04	ci right 4.199496e-04	k: 966	n:2450000
Cons ci ratio: 3.200017e-03	ci left: 3.792342e-01	ci right 3.804501e-01	k: 930613	n:2450000
KS ci ratio: 1.260338e-01	ci left: 3.698150e-04	ci right 4.199496e-04	k: 966	n:2450000
PTK7   2450000 perm   2836 sec   (864 perm/sec)   p_kst 3.942857e-04   p_cons 3.798420e-01   p_joint 3.942857e-04

Joint ci ratio: 1.258388e-01	ci left: 3.694928e-04	ci right 4.195004e-04	k: 969	n:2460000
Cons ci ratio: 3.193659e-03	ci left: 3.792130e-01	ci right 3.804264e-01	k: 934356	n:2460000
KS ci ratio: 1.258388e-01	ci left: 3.694928e-04	ci right 4.195004e-04	k: 969	n:2460000
PTK7   2460000 perm   2856 sec   (861 perm/sec)   p_kst 3.939024e-04   p_cons 3.798195e-01   p_joint 3.939024e-04

Joint ci ratio: 1.257093e-01	ci left: 3.687811e-04	ci right 4.186372e-04	k: 971	n:2470000
Cons ci ratio: 3.187079e-03	ci left: 3.792303e-01	ci right 3.804412e-01	k: 938194	n:2470000
KS ci ratio: 1.257093e-01	ci left: 3.687811e-04	ci right 4.186372e-04	k: 971	n:2470000
PTK7   2470000 perm   2877 sec   (858 perm/sec)   p_kst 3.931174e-04   p_cons 3.798356e-01   p_joint 3.931174e-04

Joint ci ratio: 1.254514e-01	ci left: 3.688563e-04	ci right 4.186127e-04	k: 975	n:2480000
Cons ci ratio: 3.180531e-03	ci left: 3.792487e-01	ci right 3.804572e-01	k: 942035	n:2480000
KS ci ratio: 1.254514e-01	ci left: 3.688563e-04	ci right 4.186127e-04	k: 975	n:2480000
PTK7   2480000 perm   2898 sec   (856 perm/sec)   p_kst 3.931452e-04   p_cons 3.798528e-01   p_joint 3.931452e-04

Joint ci ratio: 1.251313e-01	ci left: 3.693201e-04	ci right 4.190025e-04	k: 980	n:2490000
Cons ci ratio: 3.174272e-03	ci left: 3.792300e-01	ci right 3.804361e-01	k: 945784	n:2490000
KS ci ratio: 1.251313e-01	ci left: 3.693201e-04	ci right 4.190025e-04	k: 980	n:2490000
PTK7   2490000 perm   2919 sec   (853 perm/sec)   p_kst 3.935743e-04   p_cons 3.798329e-01   p_joint 3.935743e-04

Joint ci ratio: 1.250040e-01	ci left: 3.686178e-04	ci right 4.181515e-04	k: 982	n:2500000
Cons ci ratio: 3.168111e-03	ci left: 3.792023e-01	ci right 3.804060e-01	k: 949510	n:2500000
KS ci ratio: 1.250040e-01	ci left: 3.686178e-04	ci right 4.181515e-04	k: 982	n:2500000
PTK7   2500000 perm   2940 sec   (850 perm/sec)   p_kst 3.928000e-04   p_cons 3.798040e-01   p_joint 3.928000e-04

Joint ci ratio: 1.245612e-01	ci left: 3.698510e-04	ci right 4.193614e-04	k: 989	n:2510000
Cons ci ratio: 3.161997e-03	ci left: 3.791732e-01	ci right 3.803745e-01	k: 953232	n:2510000
KS ci ratio: 1.245612e-01	ci left: 3.698510e-04	ci right 4.193614e-04	k: 989	n:2510000
PTK7   2510000 perm   2962 sec   (847 perm/sec)   p_kst 3.940239e-04   p_cons 3.797737e-01   p_joint 3.940239e-04

Joint ci ratio: 1.241854e-01	ci left: 3.706902e-04	ci right 4.201522e-04	k: 995	n:2520000
Cons ci ratio: 3.155778e-03	ci left: 3.791654e-01	ci right 3.803642e-01	k: 957007	n:2520000
KS ci ratio: 1.241854e-01	ci left: 3.706902e-04	ci right 4.201522e-04	k: 995	n:2520000
PTK7   2520000 perm   2983 sec   (845 perm/sec)   p_kst 3.948413e-04   p_cons 3.797647e-01   p_joint 3.948413e-04

Joint ci ratio: 1.241232e-01	ci left: 3.696080e-04	ci right 4.188991e-04	k: 996	n:2530000
Cons ci ratio: 3.149563e-03	ci left: 3.791624e-01	ci right 3.803588e-01	k: 960794	n:2530000
KS ci ratio: 1.241232e-01	ci left: 3.696080e-04	ci right 4.188991e-04	k: 996	n:2530000
PTK7   2530000 perm   3004 sec   (842 perm/sec)   p_kst 3.936759e-04   p_cons 3.797605e-01   p_joint 3.936759e-04

Joint ci ratio: 1.238131e-01	ci left: 3.700603e-04	ci right 4.192794e-04	k: 1001	n:2540000
Cons ci ratio: 3.143277e-03	ci left: 3.791755e-01	ci right 3.803696e-01	k: 964622	n:2540000
KS ci ratio: 1.238131e-01	ci left: 3.700603e-04	ci right 4.192794e-04	k: 1001	n:2540000
PTK7   2540000 perm   3026 sec   (839 perm/sec)   p_kst 3.940945e-04   p_cons 3.797724e-01   p_joint 3.940945e-04

Joint ci ratio: 1.236897e-01	ci left: 3.693691e-04	ci right 4.184438e-04	k: 1003	n:2550000
Cons ci ratio: 3.137457e-03	ci left: 3.791243e-01	ci right 3.803160e-01	k: 968286	n:2550000
KS ci ratio: 1.236897e-01	ci left: 3.693691e-04	ci right 4.184438e-04	k: 1003	n:2550000
PTK7   2550000 perm   3050 sec   (836 perm/sec)   p_kst 3.933333e-04   p_cons 3.797200e-01   p_joint 3.933333e-04

Joint ci ratio: 1.235054e-01	ci left: 3.690619e-04	ci right 4.180173e-04	k: 1006	n:2560000
Cons ci ratio: 3.131487e-03	ci left: 3.791008e-01	ci right 3.802901e-01	k: 972020	n:2560000
KS ci ratio: 1.235054e-01	ci left: 3.690619e-04	ci right 4.180173e-04	k: 1006	n:2560000
PTK7   2560000 perm   3073 sec   (833 perm/sec)   p_kst 3.929687e-04   p_cons 3.796953e-01   p_joint 3.929687e-04

Joint ci ratio: 1.230782e-01	ci left: 3.702656e-04	ci right 4.191985e-04	k: 1013	n:2570000
Cons ci ratio: 3.125441e-03	ci left: 3.790942e-01	ci right 3.802812e-01	k: 975797	n:2570000
KS ci ratio: 1.230782e-01	ci left: 3.702656e-04	ci right 4.191985e-04	k: 1013	n:2570000
PTK7   2570000 perm   3095 sec   (830 perm/sec)   p_kst 3.941634e-04   p_cons 3.796875e-01   p_joint 3.941634e-04

Joint ci ratio: 1.228966e-01	ci left: 3.699575e-04	ci right 4.187722e-04	k: 1016	n:2580000
Cons ci ratio: 3.119521e-03	ci left: 3.790737e-01	ci right 3.802584e-01	k: 979538	n:2580000
KS ci ratio: 1.228966e-01	ci left: 3.699575e-04	ci right 4.187722e-04	k: 1016	n:2580000
PTK7   2580000 perm   3117 sec   (828 perm/sec)   p_kst 3.937984e-04   p_cons 3.796659e-01   p_joint 3.937984e-04

Joint ci ratio: 1.227158e-01	ci left: 3.696518e-04	ci right 4.183492e-04	k: 1019	n:2590000
Cons ci ratio: 3.113367e-03	ci left: 3.790938e-01	ci right 3.802763e-01	k: 983384	n:2590000
KS ci ratio: 1.227158e-01	ci left: 3.696518e-04	ci right 4.183492e-04	k: 1019	n:2590000
PTK7   2590000 perm   3139 sec   (825 perm/sec)   p_kst 3.934363e-04   p_cons 3.796849e-01   p_joint 3.934363e-04

Joint ci ratio: 1.225357e-01	ci left: 3.693485e-04	ci right 4.179294e-04	k: 1022	n:2600000
Cons ci ratio: 3.107450e-03	ci left: 3.790835e-01	ci right 3.802637e-01	k: 987151	n:2600000
KS ci ratio: 1.225357e-01	ci left: 3.693485e-04	ci right 4.179294e-04	k: 1022	n:2600000
PTK7   2600000 perm   3161 sec   (823 perm/sec)   p_kst 3.930769e-04   p_cons 3.796735e-01   p_joint 3.930769e-04

Joint ci ratio: 1.224162e-01	ci left: 3.686762e-04	ci right 4.171179e-04	k: 1024	n:2610000
Cons ci ratio: 3.101268e-03	ci left: 3.791184e-01	ci right 3.802964e-01	k: 991036	n:2610000
KS ci ratio: 1.224162e-01	ci left: 3.686762e-04	ci right 4.171179e-04	k: 1024	n:2610000
PTK7   2610000 perm   3183 sec   (820 perm/sec)   p_kst 3.923372e-04   p_cons 3.797073e-01   p_joint 3.923372e-04

Joint ci ratio: 1.222970e-01	ci left: 3.680090e-04	ci right 4.163126e-04	k: 1026	n:2620000
Cons ci ratio: 3.095309e-03	ci left: 3.791249e-01	ci right 3.803006e-01	k: 994847	n:2620000
KS ci ratio: 1.222970e-01	ci left: 3.680090e-04	ci right 4.163126e-04	k: 1026	n:2620000
PTK7   2620000 perm   3206 sec   (817 perm/sec)   p_kst 3.916031e-04   p_cons 3.797126e-01   p_joint 3.916031e-04

Joint ci ratio: 1.221781e-01	ci left: 3.673469e-04	ci right 4.155133e-04	k: 1028	n:2630000
Cons ci ratio: 3.089482e-03	ci left: 3.791165e-01	ci right 3.802899e-01	k: 998619	n:2630000
KS ci ratio: 1.221781e-01	ci left: 3.673469e-04	ci right 4.155133e-04	k: 1028	n:2630000
PTK7   2630000 perm   3228 sec   (815 perm/sec)   p_kst 3.908745e-04   p_cons 3.797030e-01   p_joint 3.908745e-04

Joint ci ratio: 1.219413e-01	ci left: 3.674243e-04	ci right 4.155008e-04	k: 1032	n:2640000
Cons ci ratio: 3.083680e-03	ci left: 3.791092e-01	ci right 3.802804e-01	k: 1002394	n:2640000
KS ci ratio: 1.219413e-01	ci left: 3.674243e-04	ci right 4.155008e-04	k: 1032	n:2640000
PTK7   2640000 perm   3250 sec   (812 perm/sec)   p_kst 3.909091e-04   p_cons 3.796947e-01   p_joint 3.909091e-04

Joint ci ratio: 1.217059e-01	ci left: 3.675013e-04	ci right 4.154883e-04	k: 1036	n:2650000
Cons ci ratio: 3.077794e-03	ci left: 3.791198e-01	ci right 3.802888e-01	k: 1006216	n:2650000
KS ci ratio: 1.217059e-01	ci left: 3.675013e-04	ci right 4.154883e-04	k: 1036	n:2650000
PTK7   2650000 perm   3273 sec   (810 perm/sec)   p_kst 3.909434e-04   p_cons 3.797042e-01   p_joint 3.909434e-04

Joint ci ratio: 1.213553e-01	ci left: 3.683068e-04	ci right 4.162505e-04	k: 1042	n:2660000
Cons ci ratio: 3.071871e-03	ci left: 3.791412e-01	ci right 3.803080e-01	k: 1010067	n:2660000
KS ci ratio: 1.213553e-01	ci left: 3.683068e-04	ci right 4.162505e-04	k: 1042	n:2660000
PTK7   2660000 perm   3295 sec   (807 perm/sec)   p_kst 3.917293e-04   p_cons 3.797244e-01   p_joint 3.917293e-04

Joint ci ratio: 1.209500e-01	ci left: 3.694696e-04	ci right 4.173926e-04	k: 1049	n:2670000
Cons ci ratio: 3.066002e-03	ci left: 3.791594e-01	ci right 3.803240e-01	k: 1013910	n:2670000
KS ci ratio: 1.209500e-01	ci left: 3.694696e-04	ci right 4.173926e-04	k: 1049	n:2670000
PTK7   2670000 perm   3318 sec   (805 perm/sec)   p_kst 3.928839e-04   p_cons 3.797416e-01   p_joint 3.928839e-04

Joint ci ratio: 1.207203e-01	ci left: 3.695384e-04	ci right 4.173728e-04	k: 1053	n:2680000
Cons ci ratio: 3.060192e-03	ci left: 3.791734e-01	ci right 3.803358e-01	k: 1017742	n:2680000
KS ci ratio: 1.207203e-01	ci left: 3.695384e-04	ci right 4.173728e-04	k: 1053	n:2680000
PTK7   2680000 perm   3340 sec   (802 perm/sec)   p_kst 3.929104e-04   p_cons 3.797545e-01   p_joint 3.929104e-04

Joint ci ratio: 1.205489e-01	ci left: 3.692463e-04	ci right 4.169701e-04	k: 1056	n:2690000
Cons ci ratio: 3.054466e-03	ci left: 3.791795e-01	ci right 3.803398e-01	k: 1021553	n:2690000
KS ci ratio: 1.205489e-01	ci left: 3.692463e-04	ci right 4.169701e-04	k: 1056	n:2690000
PTK7   2690000 perm   3363 sec   (800 perm/sec)   p_kst 3.925651e-04   p_cons 3.797595e-01   p_joint 3.925651e-04

Joint ci ratio: 1.200388e-01	ci left: 3.711118e-04	ci right 4.188593e-04	k: 1065	n:2700000
Cons ci ratio: 3.048833e-03	ci left: 3.791762e-01	ci right 3.803344e-01	k: 1025339	n:2700000
KS ci ratio: 1.200388e-01	ci left: 3.711118e-04	ci right 4.188593e-04	k: 1065	n:2700000
PTK7   2700000 perm   3386 sec   (797 perm/sec)   p_kst 3.944444e-04   p_cons 3.797552e-01   p_joint 3.944444e-04

Joint ci ratio: 1.198142e-01	ci left: 3.711741e-04	ci right 4.188340e-04	k: 1069	n:2710000
Cons ci ratio: 3.043332e-03	ci left: 3.791572e-01	ci right 3.803132e-01	k: 1029082	n:2710000
KS ci ratio: 1.198142e-01	ci left: 3.711741e-04	ci right 4.188340e-04	k: 1069	n:2710000
PTK7   2710000 perm   3409 sec   (795 perm/sec)   p_kst 3.944649e-04   p_cons 3.797351e-01   p_joint 3.944649e-04

Joint ci ratio: 1.197024e-01	ci left: 3.705227e-04	ci right 4.180515e-04	k: 1071	n:2720000
Cons ci ratio: 3.037534e-03	ci left: 3.791890e-01	ci right 3.803429e-01	k: 1032963	n:2720000
KS ci ratio: 1.197024e-01	ci left: 3.705227e-04	ci right 4.180515e-04	k: 1071	n:2720000
PTK7   2720000 perm   3432 sec   (792 perm/sec)   p_kst 3.937500e-04   p_cons 3.797658e-01   p_joint 3.937500e-04

Joint ci ratio: 1.195910e-01	ci left: 3.698762e-04	ci right 4.172747e-04	k: 1073	n:2730000
Cons ci ratio: 3.031812e-03	ci left: 3.792140e-01	ci right 3.803658e-01	k: 1036826	n:2730000
KS ci ratio: 1.195910e-01	ci left: 3.698762e-04	ci right 4.172747e-04	k: 1073	n:2730000
PTK7   2730000 perm   3463 sec   (788 perm/sec)   p_kst 3.930403e-04   p_cons 3.797897e-01   p_joint 3.930403e-04

Joint ci ratio: 1.194243e-01	ci left: 3.695884e-04	ci right 4.168794e-04	k: 1076	n:2740000
Cons ci ratio: 3.026183e-03	ci left: 3.792293e-01	ci right 3.803790e-01	k: 1040663	n:2740000
KS ci ratio: 1.194243e-01	ci left: 3.695884e-04	ci right 4.168794e-04	k: 1076	n:2740000
PTK7   2740000 perm   3486 sec   (786 perm/sec)   p_kst 3.927007e-04   p_cons 3.798040e-01   p_joint 3.927007e-04

Joint ci ratio: 1.190380e-01	ci left: 3.707140e-04	ci right 4.179848e-04	k: 1083	n:2750000
Cons ci ratio: 3.020590e-03	ci left: 3.792438e-01	ci right 3.803914e-01	k: 1044498	n:2750000
KS ci ratio: 1.190380e-01	ci left: 3.707140e-04	ci right 4.179848e-04	k: 1083	n:2750000
PTK7   2750000 perm   3509 sec   (784 perm/sec)   p_kst 3.938182e-04   p_cons 3.798175e-01   p_joint 3.938182e-04

Joint ci ratio: 1.187644e-01	ci left: 3.711286e-04	ci right 4.183358e-04	k: 1088	n:2760000
Cons ci ratio: 3.015162e-03	ci left: 3.792371e-01	ci right 3.803827e-01	k: 1048275	n:2760000
KS ci ratio: 1.187644e-01	ci left: 3.711286e-04	ci right 4.183358e-04	k: 1088	n:2760000
PTK7   2760000 perm   3532 sec   (781 perm/sec)   p_kst 3.942029e-04   p_cons 3.798098e-01   p_joint 3.942029e-04

Joint ci ratio: 1.186556e-01	ci left: 3.704893e-04	ci right 4.175690e-04	k: 1090	n:2770000
Cons ci ratio: 3.009751e-03	ci left: 3.792324e-01	ci right 3.803758e-01	k: 1052057	n:2770000
KS ci ratio: 1.186556e-01	ci left: 3.704893e-04	ci right 4.175690e-04	k: 1090	n:2770000
PTK7   2770000 perm   3556 sec   (779 perm/sec)   p_kst 3.935018e-04   p_cons 3.798040e-01   p_joint 3.935018e-04

Joint ci ratio: 1.183846e-01	ci left: 3.709019e-04	ci right 4.179188e-04	k: 1095	n:2780000
Cons ci ratio: 3.004278e-03	ci left: 3.792420e-01	ci right 3.803834e-01	k: 1055879	n:2780000
KS ci ratio: 1.183846e-01	ci left: 3.709019e-04	ci right 4.179188e-04	k: 1095	n:2780000
PTK7   2780000 perm   3579 sec   (777 perm/sec)   p_kst 3.938849e-04   p_cons 3.798126e-01   p_joint 3.938849e-04

Joint ci ratio: 1.182229e-01	ci left: 3.706159e-04	ci right 4.175280e-04	k: 1098	n:2790000
Cons ci ratio: 2.998938e-03	ci left: 3.792355e-01	ci right 3.803748e-01	k: 1059656	n:2790000
KS ci ratio: 1.182229e-01	ci left: 3.706159e-04	ci right 4.175280e-04	k: 1098	n:2790000
PTK7   2790000 perm   3602 sec   (775 perm/sec)   p_kst 3.935484e-04   p_cons 3.798050e-01   p_joint 3.935484e-04

Joint ci ratio: 1.181692e-01	ci left: 3.696389e-04	ci right 4.164045e-04	k: 1099	n:2800000
Cons ci ratio: 2.993625e-03	ci left: 3.792290e-01	ci right 3.803663e-01	k: 1063433	n:2800000
KS ci ratio: 1.181692e-01	ci left: 3.696389e-04	ci right 4.164045e-04	k: 1099	n:2800000
PTK7   2800000 perm   3626 sec   (772 perm/sec)   p_kst 3.925000e-04   p_cons 3.797975e-01   p_joint 3.925000e-04

Joint ci ratio: 1.180084e-01	ci left: 3.693595e-04	ci right 4.160218e-04	k: 1102	n:2810000
Cons ci ratio: 2.988093e-03	ci left: 3.792617e-01	ci right 3.803970e-01	k: 1067320	n:2810000
KS ci ratio: 1.180084e-01	ci left: 3.693595e-04	ci right 4.160218e-04	k: 1102	n:2810000
PTK7   2810000 perm   3650 sec   (770 perm/sec)   p_kst 3.921708e-04   p_cons 3.798292e-01   p_joint 3.921708e-04

Joint ci ratio: 1.178483e-01	ci left: 3.690822e-04	ci right 4.156417e-04	k: 1105	n:2820000
Cons ci ratio: 2.982926e-03	ci left: 3.792413e-01	ci right 3.803746e-01	k: 1071058	n:2820000
KS ci ratio: 1.178483e-01	ci left: 3.690822e-04	ci right 4.156417e-04	k: 1105	n:2820000
PTK7   2820000 perm   3673 sec   (768 perm/sec)   p_kst 3.918440e-04   p_cons 3.798078e-01   p_joint 3.918440e-04

Joint ci ratio: 1.178484e-01	ci left: 3.677780e-04	ci right 4.141730e-04	k: 1105	n:2830000
Cons ci ratio: 2.977682e-03	ci left: 3.792373e-01	ci right 3.803686e-01	k: 1074842	n:2830000
KS ci ratio: 1.178484e-01	ci left: 3.677780e-04	ci right 4.141730e-04	k: 1105	n:2830000
PTK7   2830000 perm   3697 sec   (765 perm/sec)   p_kst 3.904594e-04   p_cons 3.798028e-01   p_joint 3.904594e-04

Joint ci ratio: 1.176889e-01	ci left: 3.675082e-04	ci right 4.138021e-04	k: 1108	n:2840000
Cons ci ratio: 2.972355e-03	ci left: 3.792510e-01	ci right 3.803803e-01	k: 1078676	n:2840000
KS ci ratio: 1.176889e-01	ci left: 3.675082e-04	ci right 4.138021e-04	k: 1108	n:2840000
PTK7   2840000 perm   3721 sec   (763 perm/sec)   p_kst 3.901408e-04   p_cons 3.798155e-01   p_joint 3.901408e-04

Joint ci ratio: 1.175829e-01	ci left: 3.668998e-04	ci right 4.130726e-04	k: 1110	n:2850000
Cons ci ratio: 2.967108e-03	ci left: 3.792565e-01	ci right 3.803838e-01	k: 1082487	n:2850000
KS ci ratio: 1.175829e-01	ci left: 3.668998e-04	ci right 4.130726e-04	k: 1110	n:2850000
PTK7   2850000 perm   3745 sec   (761 perm/sec)   p_kst 3.894737e-04   p_cons 3.798200e-01   p_joint 3.894737e-04

Joint ci ratio: 1.173192e-01	ci left: 3.673138e-04	ci right 4.134279e-04	k: 1115	n:2860000
Cons ci ratio: 2.961938e-03	ci left: 3.792539e-01	ci right 3.803792e-01	k: 1086275	n:2860000
KS ci ratio: 1.173192e-01	ci left: 3.673138e-04	ci right 4.134279e-04	k: 1115	n:2860000
PTK7   2860000 perm   3768 sec   (759 perm/sec)   p_kst 3.898601e-04   p_cons 3.798164e-01   p_joint 3.898601e-04

Joint ci ratio: 1.169529e-01	ci left: 3.684016e-04	ci right 4.144978e-04	k: 1122	n:2870000
Cons ci ratio: 2.956846e-03	ci left: 3.792433e-01	ci right 3.803667e-01	k: 1090040	n:2870000
KS ci ratio: 1.169529e-01	ci left: 3.684016e-04	ci right 4.144978e-04	k: 1122	n:2870000
PTK7   2870000 perm   3792 sec   (757 perm/sec)   p_kst 3.909408e-04   p_cons 3.798049e-01   p_joint 3.909408e-04

Joint ci ratio: 1.168490e-01	ci left: 3.677965e-04	ci right 4.137733e-04	k: 1124	n:2880000
Cons ci ratio: 2.951752e-03	ci left: 3.792373e-01	ci right 3.803587e-01	k: 1093818	n:2880000
KS ci ratio: 1.168490e-01	ci left: 3.677965e-04	ci right 4.137733e-04	k: 1124	n:2880000
PTK7   2880000 perm   3816 sec   (755 perm/sec)   p_kst 3.902778e-04   p_cons 3.797979e-01   p_joint 3.902778e-04

Joint ci ratio: 1.166935e-01	ci left: 3.675316e-04	ci right 4.134099e-04	k: 1127	n:2890000
Cons ci ratio: 2.946723e-03	ci left: 3.792252e-01	ci right 3.803446e-01	k: 1097578	n:2890000
KS ci ratio: 1.166935e-01	ci left: 3.675316e-04	ci right 4.134099e-04	k: 1127	n:2890000
PTK7   2890000 perm   3840 sec   (753 perm/sec)   p_kst 3.899654e-04   p_cons 3.797848e-01   p_joint 3.899654e-04

Joint ci ratio: 1.164357e-01	ci left: 3.679381e-04	ci right 4.137588e-04	k: 1132	n:2900000
Cons ci ratio: 2.941547e-03	ci left: 3.792407e-01	ci right 3.803582e-01	k: 1101418	n:2900000
KS ci ratio: 1.164357e-01	ci left: 3.679381e-04	ci right 4.137588e-04	k: 1132	n:2900000
PTK7   2900000 perm   3863 sec   (751 perm/sec)   p_kst 3.903448e-04   p_cons 3.797993e-01   p_joint 3.903448e-04

Joint ci ratio: 1.162307e-01	ci left: 3.680083e-04	ci right 4.137515e-04	k: 1136	n:2910000
Cons ci ratio: 2.936720e-03	ci left: 3.792045e-01	ci right 3.803201e-01	k: 1105108	n:2910000
KS ci ratio: 1.162307e-01	ci left: 3.680083e-04	ci right 4.137515e-04	k: 1136	n:2910000
PTK7   2910000 perm   3887 sec   (749 perm/sec)   p_kst 3.903780e-04   p_cons 3.797622e-01   p_joint 3.903780e-04

Joint ci ratio: 1.160777e-01	ci left: 3.677456e-04	ci right 4.133918e-04	k: 1139	n:2920000
Cons ci ratio: 2.931869e-03	ci left: 3.791762e-01	ci right 3.802898e-01	k: 1108820	n:2920000
KS ci ratio: 1.160777e-01	ci left: 3.677456e-04	ci right 4.133918e-04	k: 1139	n:2920000
PTK7   2920000 perm   3911 sec   (747 perm/sec)   p_kst 3.900685e-04   p_cons 3.797329e-01   p_joint 3.900685e-04

Joint ci ratio: 1.159253e-01	ci left: 3.674846e-04	ci right 4.130344e-04	k: 1142	n:2930000
Cons ci ratio: 2.926778e-03	ci left: 3.791907e-01	ci right 3.803024e-01	k: 1112657	n:2930000
KS ci ratio: 1.159253e-01	ci left: 3.674846e-04	ci right 4.130344e-04	k: 1142	n:2930000
PTK7   2930000 perm   3936 sec   (744 perm/sec)   p_kst 3.897611e-04   p_cons 3.797464e-01   p_joint 3.897611e-04

Joint ci ratio: 1.157735e-01	ci left: 3.672255e-04	ci right 4.126795e-04	k: 1145	n:2940000
Cons ci ratio: 2.921820e-03	ci left: 3.791877e-01	ci right 3.802976e-01	k: 1116443	n:2940000
KS ci ratio: 1.157735e-01	ci left: 3.672255e-04	ci right 4.126795e-04	k: 1145	n:2940000
PTK7   2940000 perm   3960 sec   (742 perm/sec)   p_kst 3.894558e-04   p_cons 3.797425e-01   p_joint 3.894558e-04

Joint ci ratio: 1.155217e-01	ci left: 3.676266e-04	ci right 4.130245e-04	k: 1150	n:2950000
Cons ci ratio: 2.916926e-03	ci left: 3.791787e-01	ci right 3.802866e-01	k: 1120211	n:2950000
KS ci ratio: 1.155217e-01	ci left: 3.676266e-04	ci right 4.130245e-04	k: 1150	n:2950000
PTK7   2950000 perm   3984 sec   (740 perm/sec)   p_kst 3.898305e-04   p_cons 3.797325e-01   p_joint 3.898305e-04

Joint ci ratio: 1.151720e-01	ci left: 3.686812e-04	ci right 4.140622e-04	k: 1157	n:2960000
Cons ci ratio: 2.911880e-03	ci left: 3.791981e-01	ci right 3.803042e-01	k: 1124063	n:2960000
KS ci ratio: 1.151720e-01	ci left: 3.686812e-04	ci right 4.140622e-04	k: 1157	n:2960000
PTK7   2960000 perm   4009 sec   (738 perm/sec)   p_kst 3.908784e-04   p_cons 3.797510e-01   p_joint 3.908784e-04

Joint ci ratio: 1.149736e-01	ci left: 3.687479e-04	ci right 4.140536e-04	k: 1161	n:2970000
Cons ci ratio: 2.906956e-03	ci left: 3.792019e-01	ci right 3.803061e-01	k: 1127869	n:2970000
KS ci ratio: 1.149736e-01	ci left: 3.687479e-04	ci right 4.140536e-04	k: 1161	n:2970000
PTK7   2970000 perm   4034 sec   (736 perm/sec)   p_kst 3.909091e-04   p_cons 3.797539e-01   p_joint 3.909091e-04

Joint ci ratio: 1.147270e-01	ci left: 3.691402e-04	ci right 4.143902e-04	k: 1166	n:2980000
Cons ci ratio: 2.902074e-03	ci left: 3.792029e-01	ci right 3.803053e-01	k: 1131667	n:2980000
KS ci ratio: 1.147270e-01	ci left: 3.691402e-04	ci right 4.143902e-04	k: 1166	n:2980000
PTK7   2980000 perm   4058 sec   (734 perm/sec)   p_kst 3.912752e-04   p_cons 3.797540e-01   p_joint 3.912752e-04

Joint ci ratio: 1.143844e-01	ci left: 3.701797e-04	ci right 4.154125e-04	k: 1173	n:2990000
Cons ci ratio: 2.896994e-03	ci left: 3.792401e-01	ci right 3.803407e-01	k: 1135573	n:2990000
KS ci ratio: 1.143844e-01	ci left: 3.701797e-04	ci right 4.154125e-04	k: 1173	n:2990000
PTK7   2990000 perm   4083 sec   (732 perm/sec)   p_kst 3.923077e-04   p_cons 3.797903e-01   p_joint 3.923077e-04

Joint ci ratio: 1.141415e-01	ci left: 3.705648e-04	ci right 4.157420e-04	k: 1178	n:3000000
Cons ci ratio: 2.892061e-03	ci left: 3.792574e-01	ci right 3.803562e-01	k: 1139420	n:3000000
KS ci ratio: 1.141415e-01	ci left: 3.705648e-04	ci right 4.157420e-04	k: 1178	n:3000000
PTK7   3000000 perm   4108 sec   (730 perm/sec)   p_kst 3.926667e-04   p_cons 3.798067e-01   p_joint 3.926667e-04

Joint ci ratio: 1.139966e-01	ci left: 3.703019e-04	ci right 4.153859e-04	k: 1181	n:3010000
Cons ci ratio: 2.887202e-03	ci left: 3.792666e-01	ci right 3.803635e-01	k: 1143243	n:3010000
KS ci ratio: 1.139966e-01	ci left: 3.703019e-04	ci right 4.153859e-04	k: 1181	n:3010000
PTK7   3010000 perm   4133 sec   (728 perm/sec)   p_kst 3.923588e-04   p_cons 3.798150e-01   p_joint 3.923588e-04

Joint ci ratio: 1.136605e-01	ci left: 3.713276e-04	ci right 4.163943e-04	k: 1188	n:3020000
Cons ci ratio: 2.882276e-03	ci left: 3.792906e-01	ci right 3.803857e-01	k: 1147111	n:3020000
KS ci ratio: 1.136605e-01	ci left: 3.713276e-04	ci right 4.163943e-04	k: 1188	n:3020000
PTK7   3020000 perm   4157 sec   (726 perm/sec)   p_kst 3.933775e-04   p_cons 3.798381e-01   p_joint 3.933775e-04

Joint ci ratio: 1.135651e-01	ci left: 3.707434e-04	ci right 4.156989e-04	k: 1190	n:3030000
Cons ci ratio: 2.877533e-03	ci left: 3.792888e-01	ci right 3.803821e-01	k: 1150901	n:3030000
KS ci ratio: 1.135651e-01	ci left: 3.707434e-04	ci right 4.156989e-04	k: 1190	n:3030000
PTK7   3030000 perm   4182 sec   (725 perm/sec)   p_kst 3.927393e-04   p_cons 3.798353e-01   p_joint 3.927393e-04

Joint ci ratio: 1.135175e-01	ci left: 3.698435e-04	ci right 4.146698e-04	k: 1191	n:3040000
Cons ci ratio: 2.872821e-03	ci left: 3.792856e-01	ci right 3.803771e-01	k: 1154687	n:3040000
KS ci ratio: 1.135175e-01	ci left: 3.698435e-04	ci right 4.146698e-04	k: 1191	n:3040000
PTK7   3040000 perm   4208 sec   (722 perm/sec)   p_kst 3.917763e-04   p_cons 3.798313e-01   p_joint 3.917763e-04

Joint ci ratio: 1.133275e-01	ci left: 3.699051e-04	ci right 4.146589e-04	k: 1195	n:3050000
Cons ci ratio: 2.868142e-03	ci left: 3.792808e-01	ci right 3.803705e-01	k: 1158468	n:3050000
KS ci ratio: 1.133275e-01	ci left: 3.699051e-04	ci right 4.146589e-04	k: 1195	n:3050000
PTK7   3050000 perm   4233 sec   (721 perm/sec)   p_kst 3.918033e-04   p_cons 3.798256e-01   p_joint 3.918033e-04

Joint ci ratio: 1.132329e-01	ci left: 3.693314e-04	ci right 4.139759e-04	k: 1197	n:3060000
Cons ci ratio: 2.863468e-03	ci left: 3.792790e-01	ci right 3.803669e-01	k: 1162258	n:3060000
KS ci ratio: 1.132329e-01	ci left: 3.693314e-04	ci right 4.139759e-04	k: 1197	n:3060000
PTK7   3060000 perm   4259 sec   (719 perm/sec)   p_kst 3.911765e-04   p_cons 3.798229e-01   p_joint 3.911765e-04

Joint ci ratio: 1.131385e-01	ci left: 3.687614e-04	ci right 4.132973e-04	k: 1199	n:3070000
Cons ci ratio: 2.858874e-03	ci left: 3.792678e-01	ci right 3.803539e-01	k: 1166019	n:3070000
KS ci ratio: 1.131385e-01	ci left: 3.687614e-04	ci right 4.132973e-04	k: 1199	n:3070000
PTK7   3070000 perm   4285 sec   (716 perm/sec)   p_kst 3.905537e-04   p_cons 3.798107e-01   p_joint 3.905537e-04

Joint ci ratio: 1.129974e-01	ci left: 3.685106e-04	ci right 4.129570e-04	k: 1202	n:3080000
Cons ci ratio: 2.854137e-03	ci left: 3.792839e-01	ci right 3.803683e-01	k: 1169864	n:3080000
KS ci ratio: 1.129974e-01	ci left: 3.685106e-04	ci right 4.129570e-04	k: 1202	n:3080000
PTK7   3080000 perm   4311 sec   (714 perm/sec)   p_kst 3.902597e-04   p_cons 3.798260e-01   p_joint 3.902597e-04

Joint ci ratio: 1.127166e-01	ci left: 3.692049e-04	ci right 4.136171e-04	k: 1208	n:3090000
Cons ci ratio: 2.849406e-03	ci left: 3.793028e-01	ci right 3.803854e-01	k: 1173718	n:3090000
KS ci ratio: 1.127166e-01	ci left: 3.692049e-04	ci right 4.136171e-04	k: 1208	n:3090000
PTK7   3090000 perm   4336 sec   (713 perm/sec)   p_kst 3.909385e-04   p_cons 3.798440e-01   p_joint 3.909385e-04

Joint ci ratio: 1.124379e-01	ci left: 3.698949e-04	ci right 4.142728e-04	k: 1214	n:3100000
Cons ci ratio: 2.844854e-03	ci left: 3.792958e-01	ci right 3.803767e-01	k: 1177492	n:3100000
KS ci ratio: 1.124379e-01	ci left: 3.698949e-04	ci right 4.142728e-04	k: 1214	n:3100000
PTK7   3100000 perm   4362 sec   (711 perm/sec)   p_kst 3.916129e-04   p_cons 3.798361e-01   p_joint 3.916129e-04

Joint ci ratio: 1.123917e-01	ci left: 3.690180e-04	ci right 4.132714e-04	k: 1215	n:3110000
Cons ci ratio: 2.840344e-03	ci left: 3.792856e-01	ci right 3.803648e-01	k: 1181256	n:3110000
KS ci ratio: 1.123917e-01	ci left: 3.690180e-04	ci right 4.132714e-04	k: 1215	n:3110000
PTK7   3110000 perm   4387 sec   (709 perm/sec)   p_kst 3.906752e-04   p_cons 3.798251e-01   p_joint 3.906752e-04

Joint ci ratio: 1.122994e-01	ci left: 3.684583e-04	ci right 4.126058e-04	k: 1217	n:3120000
Cons ci ratio: 2.835872e-03	ci left: 3.792726e-01	ci right 3.803500e-01	k: 1185011	n:3120000
KS ci ratio: 1.122994e-01	ci left: 3.684583e-04	ci right 4.126058e-04	k: 1217	n:3120000
PTK7   3120000 perm   4413 sec   (707 perm/sec)   p_kst 3.900641e-04   p_cons 3.798112e-01   p_joint 3.900641e-04

Joint ci ratio: 1.122074e-01	ci left: 3.679021e-04	ci right 4.119445e-04	k: 1219	n:3130000
Cons ci ratio: 2.831230e-03	ci left: 3.792913e-01	ci right 3.803670e-01	k: 1188865	n:3130000
KS ci ratio: 1.122074e-01	ci left: 3.679021e-04	ci right 4.119445e-04	k: 1219	n:3130000
PTK7   3130000 perm   4439 sec   (705 perm/sec)   p_kst 3.894569e-04   p_cons 3.798291e-01   p_joint 3.894569e-04

Joint ci ratio: 1.120697e-01	ci left: 3.676591e-04	ci right 4.116148e-04	k: 1222	n:3140000
Cons ci ratio: 2.826744e-03	ci left: 3.792880e-01	ci right 3.803619e-01	k: 1192650	n:3140000
KS ci ratio: 1.120697e-01	ci left: 3.676591e-04	ci right 4.116148e-04	k: 1222	n:3140000
PTK7   3140000 perm   4465 sec   (703 perm/sec)   p_kst 3.891720e-04   p_cons 3.798248e-01   p_joint 3.891720e-04

Joint ci ratio: 1.117503e-01	ci left: 3.686520e-04	ci right 4.125924e-04	k: 1229	n:3150000
Cons ci ratio: 2.822176e-03	ci left: 3.793018e-01	ci right 3.803740e-01	k: 1196489	n:3150000
KS ci ratio: 1.117503e-01	ci left: 3.686520e-04	ci right 4.125924e-04	k: 1229	n:3150000
PTK7   3150000 perm   4492 sec   (701 perm/sec)   p_kst 3.901587e-04   p_cons 3.798378e-01   p_joint 3.901587e-04

Joint ci ratio: 1.115238e-01	ci left: 3.690234e-04	ci right 4.129132e-04	k: 1234	n:3160000
Cons ci ratio: 2.817804e-03	ci left: 3.792863e-01	ci right 3.803569e-01	k: 1200236	n:3160000
KS ci ratio: 1.115238e-01	ci left: 3.690234e-04	ci right 4.129132e-04	k: 1234	n:3160000
PTK7   3160000 perm   4517 sec   (700 perm/sec)   p_kst 3.905063e-04   p_cons 3.798215e-01   p_joint 3.905063e-04

Joint ci ratio: 1.113437e-01	ci left: 3.690860e-04	ci right 4.129076e-04	k: 1238	n:3170000
Cons ci ratio: 2.813409e-03	ci left: 3.792783e-01	ci right 3.803472e-01	k: 1204006	n:3170000
KS ci ratio: 1.113437e-01	ci left: 3.690860e-04	ci right 4.129076e-04	k: 1238	n:3170000
PTK7   3170000 perm   4543 sec   (698 perm/sec)   p_kst 3.905363e-04   p_cons 3.798126e-01   p_joint 3.905363e-04

Joint ci ratio: 1.111196e-01	ci left: 3.694539e-04	ci right 4.132252e-04	k: 1243	n:3180000
Cons ci ratio: 2.808996e-03	ci left: 3.792769e-01	ci right 3.803441e-01	k: 1207797	n:3180000
KS ci ratio: 1.111196e-01	ci left: 3.694539e-04	ci right 4.132252e-04	k: 1243	n:3180000
PTK7   3180000 perm   4571 sec   (696 perm/sec)   p_kst 3.908805e-04   p_cons 3.798104e-01   p_joint 3.908805e-04

Joint ci ratio: 1.110751e-01	ci left: 3.686005e-04	ci right 4.122520e-04	k: 1244	n:3190000
Cons ci ratio: 2.804677e-03	ci left: 3.792630e-01	ci right 3.803285e-01	k: 1211548	n:3190000
KS ci ratio: 1.110751e-01	ci left: 3.686005e-04	ci right 4.122520e-04	k: 1244	n:3190000
PTK7   3190000 perm   4599 sec   (694 perm/sec)   p_kst 3.899687e-04   p_cons 3.797956e-01   p_joint 3.899687e-04

Joint ci ratio: 1.109860e-01	ci left: 3.680563e-04	ci right 4.116061e-04	k: 1246	n:3200000
Cons ci ratio: 2.800329e-03	ci left: 3.792576e-01	ci right 3.803214e-01	k: 1215326	n:3200000
KS ci ratio: 1.109860e-01	ci left: 3.680563e-04	ci right 4.116061e-04	k: 1246	n:3200000
PTK7   3200000 perm   4625 sec   (692 perm/sec)   p_kst 3.893750e-04   p_cons 3.797894e-01   p_joint 3.893750e-04

Joint ci ratio: 1.105875e-01	ci left: 3.696358e-04	ci right 4.132052e-04	k: 1255	n:3210000
Cons ci ratio: 2.795802e-03	ci left: 3.792855e-01	ci right 3.803477e-01	k: 1219211	n:3210000
KS ci ratio: 1.105875e-01	ci left: 3.696358e-04	ci right 4.132052e-04	k: 1255	n:3210000
PTK7   3210000 perm   4652 sec   (690 perm/sec)   p_kst 3.909657e-04   p_cons 3.798165e-01   p_joint 3.909657e-04

Joint ci ratio: 1.102370e-01	ci left: 3.709037e-04	ci right 4.144750e-04	k: 1263	n:3220000
Cons ci ratio: 2.791526e-03	ci left: 3.792748e-01	ci right 3.803353e-01	k: 1222972	n:3220000
KS ci ratio: 1.102370e-01	ci left: 3.709037e-04	ci right 4.144750e-04	k: 1263	n:3220000
PTK7   3220000 perm   4678 sec   (688 perm/sec)   p_kst 3.922360e-04   p_cons 3.798050e-01   p_joint 3.922360e-04

Joint ci ratio: 1.101064e-01	ci left: 3.706586e-04	ci right 4.141462e-04	k: 1266	n:3230000
Cons ci ratio: 2.787158e-03	ci left: 3.792830e-01	ci right 3.803419e-01	k: 1226794	n:3230000
KS ci ratio: 1.101064e-01	ci left: 3.706586e-04	ci right 4.141462e-04	k: 1266	n:3230000
PTK7   3230000 perm   4705 sec   (687 perm/sec)   p_kst 3.919505e-04   p_cons 3.798124e-01   p_joint 3.919505e-04

Joint ci ratio: 1.098034e-01	ci left: 3.716157e-04	ci right 4.150878e-04	k: 1273	n:3240000
Cons ci ratio: 2.782795e-03	ci left: 3.792937e-01	ci right 3.803510e-01	k: 1230624	n:3240000
KS ci ratio: 1.098034e-01	ci left: 3.716157e-04	ci right 4.150878e-04	k: 1273	n:3240000
PTK7   3240000 perm   4732 sec   (685 perm/sec)   p_kst 3.929012e-04   p_cons 3.798222e-01   p_joint 3.929012e-04

Joint ci ratio: 1.096744e-01	ci left: 3.713700e-04	ci right 4.147591e-04	k: 1276	n:3250000
Cons ci ratio: 2.778565e-03	ci left: 3.792852e-01	ci right 3.803408e-01	k: 1234392	n:3250000
KS ci ratio: 1.096744e-01	ci left: 3.713700e-04	ci right 4.147591e-04	k: 1276	n:3250000
PTK7   3250000 perm   4758 sec   (683 perm/sec)   p_kst 3.926154e-04   p_cons 3.798129e-01   p_joint 3.926154e-04

Joint ci ratio: 1.095886e-01	ci left: 3.708275e-04	ci right 4.141171e-04	k: 1278	n:3260000
Cons ci ratio: 2.774245e-03	ci left: 3.792955e-01	ci right 3.803495e-01	k: 1238221	n:3260000
KS ci ratio: 1.095886e-01	ci left: 3.708275e-04	ci right 4.141171e-04	k: 1278	n:3260000
PTK7   3260000 perm   4785 sec   (681 perm/sec)   p_kst 3.920245e-04   p_cons 3.798224e-01   p_joint 3.920245e-04

Joint ci ratio: 1.091626e-01	ci left: 3.726679e-04	ci right 4.159924e-04	k: 1288	n:3270000
Cons ci ratio: 2.770180e-03	ci left: 3.792657e-01	ci right 3.803180e-01	k: 1241919	n:3270000
KS ci ratio: 1.091626e-01	ci left: 3.726679e-04	ci right 4.159924e-04	k: 1288	n:3270000
PTK7   3270000 perm   4812 sec   (680 perm/sec)   p_kst 3.938838e-04   p_cons 3.797917e-01   p_joint 3.938838e-04

Joint ci ratio: 1.089515e-01	ci left: 3.730145e-04	ci right 4.162901e-04	k: 1293	n:3280000
Cons ci ratio: 2.765998e-03	ci left: 3.792589e-01	ci right 3.803096e-01	k: 1245692	n:3280000
KS ci ratio: 1.089515e-01	ci left: 3.730145e-04	ci right 4.162901e-04	k: 1293	n:3280000
PTK7   3280000 perm   4839 sec   (678 perm/sec)   p_kst 3.942073e-04   p_cons 3.797841e-01   p_joint 3.942073e-04

Joint ci ratio: 1.086997e-01	ci left: 3.736548e-04	ci right 4.168981e-04	k: 1299	n:3290000
Cons ci ratio: 2.761681e-03	ci left: 3.792786e-01	ci right 3.803277e-01	k: 1249552	n:3290000
KS ci ratio: 1.086997e-01	ci left: 3.736548e-04	ci right 4.168981e-04	k: 1299	n:3290000
PTK7   3290000 perm   4866 sec   (676 perm/sec)   p_kst 3.948328e-04   p_cons 3.798030e-01   p_joint 3.948328e-04

Joint ci ratio: 1.085745e-01	ci left: 3.734069e-04	ci right 4.165685e-04	k: 1302	n:3300000
Cons ci ratio: 2.757552e-03	ci left: 3.792693e-01	ci right 3.803169e-01	k: 1253317	n:3300000
KS ci ratio: 1.085745e-01	ci left: 3.734069e-04	ci right 4.165685e-04	k: 1302	n:3300000
PTK7   3300000 perm   4892 sec   (675 perm/sec)   p_kst 3.945455e-04   p_cons 3.797930e-01   p_joint 3.945455e-04

Joint ci ratio: 1.083254e-01	ci left: 3.740423e-04	ci right 4.171719e-04	k: 1308	n:3310000
Cons ci ratio: 2.753160e-03	ci left: 3.793082e-01	ci right 3.803542e-01	k: 1257241	n:3310000
KS ci ratio: 1.083254e-01	ci left: 3.740423e-04	ci right 4.171719e-04	k: 1308	n:3310000
PTK7   3310000 perm   4920 sec   (673 perm/sec)   p_kst 3.951662e-04   p_cons 3.798311e-01   p_joint 3.951662e-04

Joint ci ratio: 1.080780e-01	ci left: 3.746740e-04	ci right 4.177714e-04	k: 1314	n:3320000
Cons ci ratio: 2.749026e-03	ci left: 3.793065e-01	ci right 3.803509e-01	k: 1261031	n:3320000
KS ci ratio: 1.080780e-01	ci left: 3.746740e-04	ci right 4.177714e-04	k: 1314	n:3320000
PTK7   3320000 perm   4947 sec   (671 perm/sec)   p_kst 3.957831e-04   p_cons 3.798286e-01   p_joint 3.957831e-04

Joint ci ratio: 1.078730e-01	ci left: 3.750098e-04	ci right 4.180589e-04	k: 1319	n:3330000
Cons ci ratio: 2.744901e-03	ci left: 3.793063e-01	ci right 3.803492e-01	k: 1264826	n:3330000
KS ci ratio: 1.078730e-01	ci left: 3.750098e-04	ci right 4.180589e-04	k: 1319	n:3330000
PTK7   3330000 perm   4974 sec   (669 perm/sec)   p_kst 3.960961e-04   p_cons 3.798276e-01   p_joint 3.960961e-04

Joint ci ratio: 1.077914e-01	ci left: 3.744697e-04	ci right 4.174222e-04	k: 1321	n:3340000
Cons ci ratio: 2.740691e-03	ci left: 3.793238e-01	ci right 3.803651e-01	k: 1268680	n:3340000
KS ci ratio: 1.077914e-01	ci left: 3.744697e-04	ci right 4.174222e-04	k: 1321	n:3340000
PTK7   3340000 perm   5002 sec   (668 perm/sec)   p_kst 3.955090e-04   p_cons 3.798443e-01   p_joint 3.955090e-04

Joint ci ratio: 1.075882e-01	ci left: 3.748042e-04	ci right 4.177089e-04	k: 1326	n:3350000
Cons ci ratio: 2.736645e-03	ci left: 3.793163e-01	ci right 3.803561e-01	k: 1272451	n:3350000
KS ci ratio: 1.075882e-01	ci left: 3.748042e-04	ci right 4.177089e-04	k: 1326	n:3350000
PTK7   3350000 perm   5029 sec   (666 perm/sec)   p_kst 3.958209e-04   p_cons 3.798361e-01   p_joint 3.958209e-04

Joint ci ratio: 1.075072e-01	ci left: 3.742680e-04	ci right 4.170769e-04	k: 1328	n:3360000
Cons ci ratio: 2.732614e-03	ci left: 3.793096e-01	ci right 3.803478e-01	k: 1276224	n:3360000
KS ci ratio: 1.075072e-01	ci left: 3.742680e-04	ci right 4.170769e-04	k: 1328	n:3360000
PTK7   3360000 perm   5056 sec   (665 perm/sec)   p_kst 3.952381e-04   p_cons 3.798286e-01   p_joint 3.952381e-04

Joint ci ratio: 1.074264e-01	ci left: 3.737349e-04	ci right 4.164487e-04	k: 1330	n:3370000
Cons ci ratio: 2.728519e-03	ci left: 3.793168e-01	ci right 3.803535e-01	k: 1280044	n:3370000
KS ci ratio: 1.074264e-01	ci left: 3.737349e-04	ci right 4.164487e-04	k: 1330	n:3370000
PTK7   3370000 perm   5083 sec   (663 perm/sec)   p_kst 3.946588e-04   p_cons 3.798350e-01   p_joint 3.946588e-04

Joint ci ratio: 1.073459e-01	ci left: 3.732050e-04	ci right 4.158242e-04	k: 1332	n:3380000
Cons ci ratio: 2.724443e-03	ci left: 3.793240e-01	ci right 3.803591e-01	k: 1283864	n:3380000
KS ci ratio: 1.073459e-01	ci left: 3.732050e-04	ci right 4.158242e-04	k: 1332	n:3380000
PTK7   3380000 perm   5111 sec   (661 perm/sec)   p_kst 3.940828e-04   p_cons 3.798414e-01   p_joint 3.940828e-04

Joint ci ratio: 1.071852e-01	ci left: 3.732524e-04	ci right 4.158092e-04	k: 1336	n:3390000
Cons ci ratio: 2.720414e-03	ci left: 3.793261e-01	ci right 3.803597e-01	k: 1287667	n:3390000
KS ci ratio: 1.071852e-01	ci left: 3.732524e-04	ci right 4.158092e-04	k: 1336	n:3390000
PTK7   3390000 perm   5139 sec   (660 perm/sec)   p_kst 3.941003e-04   p_cons 3.798428e-01   p_joint 3.941003e-04

Joint ci ratio: 1.071852e-01	ci left: 3.721546e-04	ci right 4.145862e-04	k: 1336	n:3400000
Cons ci ratio: 2.716362e-03	ci left: 3.793352e-01	ci right 3.803673e-01	k: 1291494	n:3400000
KS ci ratio: 1.071852e-01	ci left: 3.721546e-04	ci right 4.145862e-04	k: 1336	n:3400000
PTK7   3400000 perm   5166 sec   (658 perm/sec)   p_kst 3.929412e-04   p_cons 3.798512e-01   p_joint 3.929412e-04

Joint ci ratio: 1.070652e-01	ci left: 3.719194e-04	ci right 4.142738e-04	k: 1339	n:3410000
Cons ci ratio: 2.712269e-03	ci left: 3.793546e-01	ci right 3.803852e-01	k: 1295356	n:3410000
KS ci ratio: 1.070652e-01	ci left: 3.719194e-04	ci right 4.142738e-04	k: 1339	n:3410000
PTK7   3410000 perm   5194 sec   (657 perm/sec)   p_kst 3.926686e-04   p_cons 3.798698e-01   p_joint 3.926686e-04

Joint ci ratio: 1.069057e-01	ci left: 3.719702e-04	ci right 4.142633e-04	k: 1343	n:3420000
Cons ci ratio: 2.708275e-03	ci left: 3.793598e-01	ci right 3.803889e-01	k: 1299170	n:3420000
KS ci ratio: 1.069057e-01	ci left: 3.719702e-04	ci right 4.142633e-04	k: 1343	n:3420000
PTK7   3420000 perm   5221 sec   (655 perm/sec)   p_kst 3.926901e-04   p_cons 3.798743e-01   p_joint 3.926901e-04

Joint ci ratio: 1.066679e-01	ci left: 3.725883e-04	ci right 4.148515e-04	k: 1349	n:3430000
Cons ci ratio: 2.704198e-03	ci left: 3.793825e-01	ci right 3.804101e-01	k: 1303044	n:3430000
KS ci ratio: 1.066679e-01	ci left: 3.725883e-04	ci right 4.148515e-04	k: 1349	n:3430000
PTK7   3430000 perm   5249 sec   (653 perm/sec)   p_kst 3.932945e-04   p_cons 3.798962e-01   p_joint 3.932945e-04

Joint ci ratio: 1.065890e-01	ci left: 3.720711e-04	ci right 4.142425e-04	k: 1351	n:3440000
Cons ci ratio: 2.700264e-03	ci left: 3.793833e-01	ci right 3.804094e-01	k: 1306843	n:3440000
KS ci ratio: 1.065890e-01	ci left: 3.720711e-04	ci right 4.142425e-04	k: 1351	n:3440000
PTK7   3440000 perm   5277 sec   (652 perm/sec)   p_kst 3.927326e-04   p_cons 3.798962e-01   p_joint 3.927326e-04

Joint ci ratio: 1.063924e-01	ci left: 3.724033e-04	ci right 4.145296e-04	k: 1356	n:3450000
Cons ci ratio: 2.696333e-03	ci left: 3.793866e-01	ci right 3.804112e-01	k: 1310651	n:3450000
KS ci ratio: 1.063924e-01	ci left: 3.724033e-04	ci right 4.145296e-04	k: 1356	n:3450000
PTK7   3450000 perm   5306 sec   (650 perm/sec)   p_kst 3.930435e-04   p_cons 3.798988e-01   p_joint 3.930435e-04

Joint ci ratio: 1.062750e-01	ci left: 3.721710e-04	ci right 4.142217e-04	k: 1359	n:3460000
Cons ci ratio: 2.692294e-03	ci left: 3.794119e-01	ci right 3.804351e-01	k: 1314535	n:3460000
KS ci ratio: 1.062750e-01	ci left: 3.721710e-04	ci right 4.142217e-04	k: 1359	n:3460000
PTK7   3460000 perm   5335 sec   (649 perm/sec)   p_kst 3.927746e-04   p_cons 3.799234e-01   p_joint 3.927746e-04

Joint ci ratio: 1.061970e-01	ci left: 3.716595e-04	ci right 4.136196e-04	k: 1361	n:3470000
Cons ci ratio: 2.688509e-03	ci left: 3.793956e-01	ci right 3.804173e-01	k: 1318275	n:3470000
KS ci ratio: 1.061970e-01	ci left: 3.716595e-04	ci right 4.136196e-04	k: 1361	n:3470000
PTK7   3470000 perm   5363 sec   (647 perm/sec)   p_kst 3.922190e-04   p_cons 3.799063e-01   p_joint 3.922190e-04

Joint ci ratio: 1.060414e-01	ci left: 3.717104e-04	ci right 4.136110e-04	k: 1365	n:3480000
Cons ci ratio: 2.684740e-03	ci left: 3.793794e-01	ci right 3.803996e-01	k: 1322015	n:3480000
KS ci ratio: 1.060414e-01	ci left: 3.717104e-04	ci right 4.136110e-04	k: 1365	n:3480000
PTK7   3480000 perm   5392 sec   (645 perm/sec)   p_kst 3.922414e-04   p_cons 3.798894e-01   p_joint 3.922414e-04

Joint ci ratio: 1.058865e-01	ci left: 3.717611e-04	ci right 4.136023e-04	k: 1369	n:3490000
Cons ci ratio: 2.680905e-03	ci left: 3.793776e-01	ci right 3.803963e-01	k: 1325805	n:3490000
KS ci ratio: 1.058865e-01	ci left: 3.717611e-04	ci right 4.136023e-04	k: 1369	n:3490000
PTK7   3490000 perm   5421 sec   (644 perm/sec)   p_kst 3.922636e-04   p_cons 3.798868e-01   p_joint 3.922636e-04

Joint ci ratio: 1.058865e-01	ci left: 3.706989e-04	ci right 4.124206e-04	k: 1369	n:3500000
Cons ci ratio: 2.677105e-03	ci left: 3.793726e-01	ci right 3.803899e-01	k: 1329584	n:3500000
KS ci ratio: 1.058865e-01	ci left: 3.706989e-04	ci right 4.124206e-04	k: 1369	n:3500000
PTK7   3500000 perm   5449 sec   (642 perm/sec)   p_kst 3.911429e-04   p_cons 3.798811e-01   p_joint 3.911429e-04

Joint ci ratio: 1.058094e-01	ci left: 3.701975e-04	ci right 4.118305e-04	k: 1371	n:3510000
Cons ci ratio: 2.673397e-03	ci left: 3.793543e-01	ci right 3.803701e-01	k: 1333316	n:3510000
KS ci ratio: 1.058094e-01	ci left: 3.701975e-04	ci right 4.118305e-04	k: 1371	n:3510000
PTK7   3510000 perm   5478 sec   (641 perm/sec)   p_kst 3.905983e-04   p_cons 3.798621e-01   p_joint 3.905983e-04

Joint ci ratio: 1.055787e-01	ci left: 3.708053e-04	ci right 4.124101e-04	k: 1377	n:3520000
Cons ci ratio: 2.669622e-03	ci left: 3.793506e-01	ci right 3.803649e-01	k: 1337099	n:3520000
KS ci ratio: 1.055787e-01	ci left: 3.708053e-04	ci right 4.124101e-04	k: 1377	n:3520000
PTK7   3520000 perm   5506 sec   (639 perm/sec)   p_kst 3.911932e-04   p_cons 3.798577e-01   p_joint 3.911932e-04

Joint ci ratio: 1.054640e-01	ci left: 3.705823e-04	ci right 4.121141e-04	k: 1380	n:3530000
Cons ci ratio: 2.665805e-03	ci left: 3.793571e-01	ci right 3.803700e-01	k: 1340918	n:3530000
KS ci ratio: 1.054640e-01	ci left: 3.705823e-04	ci right 4.121141e-04	k: 1380	n:3530000
PTK7   3530000 perm   5534 sec   (638 perm/sec)   p_kst 3.909348e-04   p_cons 3.798635e-01   p_joint 3.909348e-04

Joint ci ratio: 1.053496e-01	ci left: 3.703605e-04	ci right 4.118198e-04	k: 1383	n:3540000
Cons ci ratio: 2.662006e-03	ci left: 3.793633e-01	ci right 3.803748e-01	k: 1344736	n:3540000
KS ci ratio: 1.053496e-01	ci left: 3.703605e-04	ci right 4.118198e-04	k: 1383	n:3540000
PTK7   3540000 perm   5563 sec   (636 perm/sec)   p_kst 3.906780e-04   p_cons 3.798689e-01   p_joint 3.906780e-04

Joint ci ratio: 1.050464e-01	ci left: 3.715115e-04	ci right 4.129725e-04	k: 1391	n:3550000
Cons ci ratio: 2.658278e-03	ci left: 3.793599e-01	ci right 3.803699e-01	k: 1348520	n:3550000
KS ci ratio: 1.050464e-01	ci left: 3.715115e-04	ci right 4.129725e-04	k: 1391	n:3550000
PTK7   3550000 perm   5591 sec   (635 perm/sec)   p_kst 3.918310e-04   p_cons 3.798648e-01   p_joint 3.918310e-04

Joint ci ratio: 1.048582e-01	ci left: 3.718356e-04	ci right 4.132538e-04	k: 1396	n:3560000
Cons ci ratio: 2.654555e-03	ci left: 3.793581e-01	ci right 3.803668e-01	k: 1352310	n:3560000
KS ci ratio: 1.048582e-01	ci left: 3.718356e-04	ci right 4.132538e-04	k: 1396	n:3560000
PTK7   3560000 perm   5621 sec   (633 perm/sec)   p_kst 3.921348e-04   p_cons 3.798624e-01   p_joint 3.921348e-04

Joint ci ratio: 1.047458e-01	ci left: 3.716123e-04	ci right 4.129586e-04	k: 1399	n:3570000
Cons ci ratio: 2.650878e-03	ci left: 3.793511e-01	ci right 3.803583e-01	k: 1356081	n:3570000
KS ci ratio: 1.047458e-01	ci left: 3.716123e-04	ci right 4.129586e-04	k: 1399	n:3570000
PTK7   3570000 perm   5650 sec   (632 perm/sec)   p_kst 3.918768e-04   p_cons 3.798546e-01   p_joint 3.918768e-04

Joint ci ratio: 1.045593e-01	ci left: 3.719344e-04	ci right 4.132382e-04	k: 1404	n:3580000
Cons ci ratio: 2.647034e-03	ci left: 3.793765e-01	ci right 3.803823e-01	k: 1359968	n:3580000
KS ci ratio: 1.045593e-01	ci left: 3.719344e-04	ci right 4.132382e-04	k: 1404	n:3580000
PTK7   3580000 perm   5679 sec   (630 perm/sec)   p_kst 3.921788e-04   p_cons 3.798793e-01   p_joint 3.921788e-04

Joint ci ratio: 1.045593e-01	ci left: 3.708984e-04	ci right 4.120872e-04	k: 1404	n:3590000
Cons ci ratio: 2.643307e-03	ci left: 3.793840e-01	ci right 3.803884e-01	k: 1363791	n:3590000
KS ci ratio: 1.045593e-01	ci left: 3.708984e-04	ci right 4.120872e-04	k: 1404	n:3590000
PTK7   3590000 perm   5709 sec   (629 perm/sec)   p_kst 3.910864e-04   p_cons 3.798861e-01   p_joint 3.910864e-04

Joint ci ratio: 1.043368e-01	ci left: 3.714912e-04	ci right 4.126527e-04	k: 1410	n:3600000
Cons ci ratio: 2.639604e-03	ci left: 3.793900e-01	ci right 3.803930e-01	k: 1367609	n:3600000
KS ci ratio: 1.043368e-01	ci left: 3.714912e-04	ci right 4.126527e-04	k: 1410	n:3600000
PTK7   3600000 perm   5738 sec   (627 perm/sec)   p_kst 3.916667e-04   p_cons 3.798914e-01   p_joint 3.916667e-04

Joint ci ratio: 1.042629e-01	ci left: 3.710017e-04	ci right 4.120781e-04	k: 1412	n:3610000
Cons ci ratio: 2.635885e-03	ci left: 3.794015e-01	ci right 3.804031e-01	k: 1371447	n:3610000
KS ci ratio: 1.042629e-01	ci left: 3.710017e-04	ci right 4.120781e-04	k: 1412	n:3610000
PTK7   3610000 perm   5768 sec   (626 perm/sec)   p_kst 3.911357e-04   p_cons 3.799022e-01   p_joint 3.911357e-04

Joint ci ratio: 1.041157e-01	ci left: 3.710530e-04	ci right 4.120735e-04	k: 1416	n:3620000
Cons ci ratio: 2.632377e-03	ci left: 3.793779e-01	ci right 3.803781e-01	k: 1375158	n:3620000
KS ci ratio: 1.041157e-01	ci left: 3.710530e-04	ci right 4.120735e-04	k: 1416	n:3620000
PTK7   3620000 perm   5797 sec   (624 perm/sec)   p_kst 3.911602e-04   p_cons 3.798779e-01   p_joint 3.911602e-04

Joint ci ratio: 1.038959e-01	ci left: 3.716408e-04	ci right 4.126342e-04	k: 1422	n:3630000
Cons ci ratio: 2.628832e-03	ci left: 3.793638e-01	ci right 3.803626e-01	k: 1378903	n:3630000
KS ci ratio: 1.038959e-01	ci left: 3.716408e-04	ci right 4.126342e-04	k: 1422	n:3630000
PTK7   3630000 perm   5827 sec   (623 perm/sec)   p_kst 3.917355e-04   p_cons 3.798631e-01   p_joint 3.917355e-04

Joint ci ratio: 1.036050e-01	ci left: 3.727605e-04	ci right 4.137553e-04	k: 1430	n:3640000
Cons ci ratio: 2.625270e-03	ci left: 3.793552e-01	ci right 3.803527e-01	k: 1382668	n:3640000
KS ci ratio: 1.036050e-01	ci left: 3.727605e-04	ci right 4.137553e-04	k: 1430	n:3640000
PTK7   3640000 perm   5856 sec   (622 perm/sec)   p_kst 3.928571e-04   p_cons 3.798538e-01   p_joint 3.928571e-04

Joint ci ratio: 1.034605e-01	ci left: 3.728068e-04	ci right 4.137460e-04	k: 1434	n:3650000
Cons ci ratio: 2.621539e-03	ci left: 3.793796e-01	ci right 3.803757e-01	k: 1386553	n:3650000
KS ci ratio: 1.034605e-01	ci left: 3.728068e-04	ci right 4.137460e-04	k: 1434	n:3650000
PTK7   3650000 perm   5886 sec   (620 perm/sec)   p_kst 3.928767e-04   p_cons 3.798775e-01   p_joint 3.928767e-04

Joint ci ratio: 1.033885e-01	ci left: 3.723205e-04	ci right 4.131761e-04	k: 1436	n:3660000
Cons ci ratio: 2.617934e-03	ci left: 3.793841e-01	ci right 3.803789e-01	k: 1390366	n:3660000
KS ci ratio: 1.033885e-01	ci left: 3.723205e-04	ci right 4.131761e-04	k: 1436	n:3660000
PTK7   3660000 perm   5917 sec   (619 perm/sec)   p_kst 3.923497e-04   p_cons 3.798814e-01   p_joint 3.923497e-04

Joint ci ratio: 1.033167e-01	ci left: 3.718369e-04	ci right 4.126094e-04	k: 1438	n:3670000
Cons ci ratio: 2.614394e-03	ci left: 3.793794e-01	ci right 3.803728e-01	k: 1394145	n:3670000
KS ci ratio: 1.033167e-01	ci left: 3.718369e-04	ci right 4.126094e-04	k: 1438	n:3670000
PTK7   3670000 perm   5947 sec   (617 perm/sec)   p_kst 3.918256e-04   p_cons 3.798760e-01   p_joint 3.918256e-04

Joint ci ratio: 1.032092e-01	ci left: 3.716206e-04	ci right 4.123244e-04	k: 1441	n:3680000
Cons ci ratio: 2.610818e-03	ci left: 3.793840e-01	ci right 3.803760e-01	k: 1397958	n:3680000
KS ci ratio: 1.032092e-01	ci left: 3.716206e-04	ci right 4.123244e-04	k: 1441	n:3680000
PTK7   3680000 perm   5977 sec   (616 perm/sec)   p_kst 3.915761e-04   p_cons 3.798799e-01   p_joint 3.915761e-04

Joint ci ratio: 1.030307e-01	ci left: 3.719336e-04	ci right 4.125970e-04	k: 1446	n:3690000
Cons ci ratio: 2.607262e-03	ci left: 3.793877e-01	ci right 3.803784e-01	k: 1401768	n:3690000
KS ci ratio: 1.030307e-01	ci left: 3.719336e-04	ci right 4.125970e-04	k: 1446	n:3690000
PTK7   3690000 perm   6007 sec   (614 perm/sec)   p_kst 3.918699e-04   p_cons 3.798829e-01   p_joint 3.918699e-04

Joint ci ratio: 1.029951e-01	ci left: 3.711917e-04	ci right 4.117591e-04	k: 1447	n:3700000
Cons ci ratio: 2.603698e-03	ci left: 3.793951e-01	ci right 3.803845e-01	k: 1405592	n:3700000
KS ci ratio: 1.029951e-01	ci left: 3.711917e-04	ci right 4.117591e-04	k: 1447	n:3700000
PTK7   3700000 perm   6038 sec   (613 perm/sec)   p_kst 3.910811e-04   p_cons 3.798897e-01   p_joint 3.910811e-04

Joint ci ratio: 1.028532e-01	ci left: 3.712416e-04	ci right 4.117551e-04	k: 1451	n:3710000
Cons ci ratio: 2.600222e-03	ci left: 3.793894e-01	ci right 3.803774e-01	k: 1409367	n:3710000
KS ci ratio: 1.028532e-01	ci left: 3.712416e-04	ci right 4.117551e-04	k: 1451	n:3710000
PTK7   3710000 perm   6068 sec   (611 perm/sec)   p_kst 3.911051e-04   p_cons 3.798833e-01   p_joint 3.911051e-04

Joint ci ratio: 1.027118e-01	ci left: 3.712912e-04	ci right 4.117511e-04	k: 1455	n:3720000
Cons ci ratio: 2.596790e-03	ci left: 3.793783e-01	ci right 3.803649e-01	k: 1413122	n:3720000
KS ci ratio: 1.027118e-01	ci left: 3.712912e-04	ci right 4.117511e-04	k: 1455	n:3720000
PTK7   3720000 perm   6098 sec   (610 perm/sec)   p_kst 3.911290e-04   p_cons 3.798715e-01   p_joint 3.911290e-04

Joint ci ratio: 1.026413e-01	ci left: 3.708182e-04	ci right 4.111972e-04	k: 1457	n:3730000
Cons ci ratio: 2.593382e-03	ci left: 3.793653e-01	ci right 3.803507e-01	k: 1416870	n:3730000
KS ci ratio: 1.026413e-01	ci left: 3.708182e-04	ci right 4.111972e-04	k: 1457	n:3730000
PTK7   3730000 perm   6128 sec   (609 perm/sec)   p_kst 3.906166e-04   p_cons 3.798579e-01   p_joint 3.906166e-04

Joint ci ratio: 1.023958e-01	ci left: 3.716504e-04	ci right 4.120174e-04	k: 1464	n:3740000
Cons ci ratio: 2.589979e-03	ci left: 3.793538e-01	ci right 3.803378e-01	k: 1420623	n:3740000
KS ci ratio: 1.023958e-01	ci left: 3.716504e-04	ci right 4.120174e-04	k: 1464	n:3740000
PTK7   3740000 perm   6158 sec   (607 perm/sec)   p_kst 3.914439e-04   p_cons 3.798457e-01   p_joint 3.914439e-04

Joint ci ratio: 1.021867e-01	ci left: 3.722184e-04	ci right 4.125596e-04	k: 1470	n:3750000
Cons ci ratio: 2.586552e-03	ci left: 3.793493e-01	ci right 3.803320e-01	k: 1424402	n:3750000
KS ci ratio: 1.021867e-01	ci left: 3.722184e-04	ci right 4.125596e-04	k: 1470	n:3750000
PTK7   3750000 perm   6189 sec   (606 perm/sec)   p_kst 3.920000e-04   p_cons 3.798405e-01   p_joint 3.920000e-04

Joint ci ratio: 1.020481e-01	ci left: 3.722651e-04	ci right 4.125533e-04	k: 1474	n:3760000
Cons ci ratio: 2.583060e-03	ci left: 3.793591e-01	ci right 3.803405e-01	k: 1428235	n:3760000
KS ci ratio: 1.020481e-01	ci left: 3.722651e-04	ci right 4.125533e-04	k: 1474	n:3760000
PTK7   3760000 perm   6220 sec   (605 perm/sec)   p_kst 3.920213e-04   p_cons 3.798497e-01   p_joint 3.920213e-04

Joint ci ratio: 1.019790e-01	ci left: 3.717947e-04	ci right 4.120031e-04	k: 1476	n:3770000
Cons ci ratio: 2.579672e-03	ci left: 3.793525e-01	ci right 3.803326e-01	k: 1432006	n:3770000
KS ci ratio: 1.019790e-01	ci left: 3.717947e-04	ci right 4.120031e-04	k: 1476	n:3770000
PTK7   3770000 perm   6251 sec   (603 perm/sec)   p_kst 3.915119e-04   p_cons 3.798424e-01   p_joint 3.915119e-04

Joint ci ratio: 1.018756e-01	ci left: 3.715845e-04	ci right 4.117270e-04	k: 1479	n:3780000
Cons ci ratio: 2.576295e-03	ci left: 3.793461e-01	ci right 3.803249e-01	k: 1435778	n:3780000
KS ci ratio: 1.018756e-01	ci left: 3.715845e-04	ci right 4.117270e-04	k: 1479	n:3780000
PTK7   3780000 perm   6282 sec   (602 perm/sec)   p_kst 3.912698e-04   p_cons 3.798354e-01   p_joint 3.912698e-04

Joint ci ratio: 1.018068e-01	ci left: 3.711183e-04	ci right 4.111818e-04	k: 1481	n:3790000
Cons ci ratio: 2.572814e-03	ci left: 3.793615e-01	ci right 3.803390e-01	k: 1439632	n:3790000
KS ci ratio: 1.018068e-01	ci left: 3.711183e-04	ci right 4.111818e-04	k: 1481	n:3790000
PTK7   3790000 perm   6313 sec   (600 perm/sec)   p_kst 3.907652e-04   p_cons 3.798501e-01   p_joint 3.907652e-04

Joint ci ratio: 1.016355e-01	ci left: 3.714240e-04	ci right 4.114490e-04	k: 1486	n:3800000
Cons ci ratio: 2.569383e-03	ci left: 3.793701e-01	ci right 3.803464e-01	k: 1443461	n:3800000
KS ci ratio: 1.016355e-01	ci left: 3.714240e-04	ci right 4.114490e-04	k: 1486	n:3800000
PTK7   3800000 perm   6343 sec   (599 perm/sec)   p_kst 3.910526e-04   p_cons 3.798582e-01   p_joint 3.910526e-04

Joint ci ratio: 1.014991e-01	ci left: 3.714723e-04	ci right 4.114456e-04	k: 1490	n:3810000
Cons ci ratio: 2.566037e-03	ci left: 3.793656e-01	ci right 3.803406e-01	k: 1447240	n:3810000
KS ci ratio: 1.014991e-01	ci left: 3.714723e-04	ci right 4.114456e-04	k: 1490	n:3810000
PTK7   3810000 perm   6375 sec   (598 perm/sec)   p_kst 3.910761e-04   p_cons 3.798530e-01   p_joint 3.910761e-04

Joint ci ratio: 1.012955e-01	ci left: 3.720308e-04	ci right 4.119790e-04	k: 1496	n:3820000
Cons ci ratio: 2.562699e-03	ci left: 3.793619e-01	ci right 3.803356e-01	k: 1451022	n:3820000
KS ci ratio: 1.012955e-01	ci left: 3.720308e-04	ci right 4.119790e-04	k: 1496	n:3820000
PTK7   3820000 perm   6405 sec   (596 perm/sec)   p_kst 3.916230e-04   p_cons 3.798487e-01   p_joint 3.916230e-04

Joint ci ratio: 1.009923e-01	ci left: 3.733498e-04	ci right 4.133126e-04	k: 1505	n:3830000
Cons ci ratio: 2.559480e-03	ci left: 3.793390e-01	ci right 3.803114e-01	k: 1454730	n:3830000
KS ci ratio: 1.009923e-01	ci left: 3.733498e-04	ci right 4.133126e-04	k: 1505	n:3830000
PTK7   3830000 perm   6436 sec   (595 perm/sec)   p_kst 3.929504e-04   p_cons 3.798251e-01   p_joint 3.929504e-04

Joint ci ratio: 1.008584e-01	ci left: 3.733929e-04	ci right 4.133042e-04	k: 1509	n:3840000
Cons ci ratio: 2.556138e-03	ci left: 3.793408e-01	ci right 3.803120e-01	k: 1458533	n:3840000
KS ci ratio: 1.008584e-01	ci left: 3.733929e-04	ci right 4.133042e-04	k: 1509	n:3840000
PTK7   3840000 perm   6467 sec   (594 perm/sec)   p_kst 3.929687e-04   p_cons 3.798263e-01   p_joint 3.929687e-04

Joint ci ratio: 1.007584e-01	ci left: 3.731827e-04	ci right 4.130296e-04	k: 1512	n:3850000
Cons ci ratio: 2.552785e-03	ci left: 3.793474e-01	ci right 3.803172e-01	k: 1462354	n:3850000
KS ci ratio: 1.007584e-01	ci left: 3.731827e-04	ci right 4.130296e-04	k: 1512	n:3850000
PTK7   3850000 perm   6499 sec   (592 perm/sec)   p_kst 3.927273e-04   p_cons 3.798322e-01   p_joint 3.927273e-04

Joint ci ratio: 1.005592e-01	ci left: 3.737312e-04	ci right 4.135531e-04	k: 1518	n:3860000
Cons ci ratio: 2.549556e-03	ci left: 3.793331e-01	ci right 3.803018e-01	k: 1466095	n:3860000
KS ci ratio: 1.005592e-01	ci left: 3.737312e-04	ci right 4.135531e-04	k: 1518	n:3860000
PTK7   3860000 perm   6530 sec   (591 perm/sec)   p_kst 3.932642e-04   p_cons 3.798174e-01   p_joint 3.932642e-04

Joint ci ratio: 1.004600e-01	ci left: 3.735211e-04	ci right 4.132791e-04	k: 1521	n:3870000
Cons ci ratio: 2.546207e-03	ci left: 3.793435e-01	ci right 3.803109e-01	k: 1469931	n:3870000
KS ci ratio: 1.004600e-01	ci left: 3.735211e-04	ci right 4.132791e-04	k: 1521	n:3870000
PTK7   3870000 perm   6561 sec   (590 perm/sec)   p_kst 3.930233e-04   p_cons 3.798271e-01   p_joint 3.930233e-04

Joint ci ratio: 1.003283e-01	ci left: 3.735635e-04	ci right 4.132708e-04	k: 1525	n:3880000
Cons ci ratio: 2.542998e-03	ci left: 3.793304e-01	ci right 3.802965e-01	k: 1473676	n:3880000
KS ci ratio: 1.003283e-01	ci left: 3.735635e-04	ci right 4.132708e-04	k: 1525	n:3880000
PTK7   3880000 perm   6592 sec   (589 perm/sec)   p_kst 3.930412e-04   p_cons 3.798134e-01   p_joint 3.930412e-04

Joint ci ratio: 1.002298e-01	ci left: 3.733551e-04	ci right 4.129989e-04	k: 1528	n:3890000
Cons ci ratio: 2.539761e-03	ci left: 3.793249e-01	ci right 3.802897e-01	k: 1477450	n:3890000
KS ci ratio: 1.002298e-01	ci left: 3.733551e-04	ci right 4.129989e-04	k: 1528	n:3890000
PTK7   3890000 perm   6624 sec   (587 perm/sec)   p_kst 3.928021e-04   p_cons 3.798072e-01   p_joint 3.928021e-04

Joint ci ratio: 1.000990e-01	ci left: 3.733977e-04	ci right 4.129913e-04	k: 1532	n:3900000
Cons ci ratio: 2.536441e-03	ci left: 3.793370e-01	ci right 3.803006e-01	k: 1481293	n:3900000
KS ci ratio: 1.000990e-01	ci left: 3.733977e-04	ci right 4.129913e-04	k: 1532	n:3900000
PTK7   3900000 perm   6656 sec   (586 perm/sec)   p_kst 3.928205e-04   p_cons 3.798187e-01   p_joint 3.928205e-04

Joint ci ratio: 9.996862e-02	ci left: 3.734401e-04	ci right 4.129836e-04	k: 1536	n:3910000
Cons ci ratio: 2.533213e-03	ci left: 3.793342e-01	ci right 3.802966e-01	k: 1485078	n:3910000
KS ci ratio: 9.996862e-02	ci left: 3.734401e-04	ci right 4.129836e-04	k: 1536	n:3910000
PTK7   3910000 perm   6687 sec   (585 perm/sec)   p_kst 3.928389e-04   p_cons 3.798153e-01   p_joint 3.928389e-04

Outputting figure to mutsig2_images.part000000000140/PTK7.2_3293_3910000_0.00039284_0.37982_0.00039284.png
                gene_name: PTK7
               theta_stop: 0.100 
                    nperm: 3910000 
                     p_ks: 0.00039 
        ci_ks_bounds_left: 0.00037 
       ci_ks_bounds_right: 0.00041 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.00039 
     ci_joint_bounds_left: 0.00037 
    ci_joint_bounds_right: 0.00041 

Current progress: 75 percent done.
PTPN21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.739085e-02	ci left: 6.625985e-01	ci right 6.811013e-01	k: 6719	n:10000
KS ci ratio: 1.939234e-02	ci left: 7.954727e-01	ci right 8.111502e-01	k: 8034	n:10000
PTPN21   10000 perm   2 sec   (5614 perm/sec)   p_kst 8.034000e-01   p_cons 6.719000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000140/PTPN21.2_3597_10000_0.8034_0.6719_1.png
                gene_name: PTPN21
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000140
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 140 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1724>
Subject: Job 9877998: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1724>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000141> was used as the working directory.
Started at Fri Oct  5 22:52:58 2012
Results reported at Fri Oct  5 22:54:06 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000141.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000141.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 141  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000141.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     58.87 sec.
    Max Memory :      2030 MB
    Max Swap   :      4670 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
141
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 141
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 141: processing genes 12695 - 12784
Calculating significance of each gene.
Using projection method.
12695	PTPRC	1
12696	PTPRCAP	1
12697	PTPRD	9.910817e-02
12698	PTPRE	1
12699	PTPRF	1
12700	PTPRG	1
12701	PTPRH	3.181913e-01
12702	PTPRJ	2.360389e-01
12703	PTPRK	1
12704	PTPRM	1
12705	PTPRN	1
12706	PTPRN2	1
12707	PTPRO	1.100413e-01
12708	PTPRR	1
12709	PTPRS	1
12710	PTPRT	2.232830e-01
12711	PTPRU	1
12712	PTPRZ1	1
12713	PTRF	1
12714	PTRH1	1
12715	PTRH2	1
12716	PTS	1
12717	PTTG1	1
12718	PTTG1IP	1
12719	PTTG2	1
12720	PTX3	1
12721	PTX4	1
12722	PUF60	1
12723	PUM1	9.476549e-02
12724	PUM2	3.761649e-02
12725	PURA	1
12726	PURB	1
12727	PURG	1
12728	PUS1	1
12729	PUS10	1
12730	PUS3	8.936390e-02
12731	PUS7	1
12732	PUS7L	1
12733	PUSL1	1
12734	PVALB	1
12735	PVR	1
12736	PVRIG	2.099716e-02
12737	PVRL1	1
12738	PVRL2	1
12739	PVRL3	1
12740	PVRL4	1
12741	PWP1	1
12742	PWP2	1
12743	PWWP2A	1
12744	PWWP2B	1
12745	PXDN	1
12746	PXDNL	1
12747	PXK	1
12748	PXMP2	1
12749	PXMP4	1
12750	PXN	1
12751	PXT1	1
12752	PYCARD	1
12753	PYCR1	1
12754	PYCR2	1
12755	PYCRL	1
12756	PYDC1	1
12757	PYDC2	1
12758	PYGB	1
12759	PYGL	1
12760	PYGM	1
12761	PYGO1	1
12762	PYGO2	1
12763	PYHIN1	1
12764	PYROXD1	1
12765	PYROXD2	1
12766	PYY	1
12767	PZP	1
12768	ProSAPiP1	1
12769	QARS	1
12770	QDPR	1
12771	QKI	5.477662e-02
12772	QPCT	1
12773	QPCTL	1
12774	QPRT	1
12775	QRFP	1
12776	QRFPR	8.042708e-02
12777	QRICH1	1
12778	QRICH2	1
12779	QRSL1	1
12780	QSER1	1
12781	QSOX1	1
12782	QSOX2	1
12783	QTRT1	1
12784	QTRTD1	1
Done

Running MutSig 2:
Scatter job 141: processing genes 12695 - 12784
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PTPRD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.184452e-02	ci left: 9.108030e-01	ci right 9.217531e-01	k: 9164	n:10000
Cons ci ratio: 1.503491e-02	ci left: 8.650892e-01	ci right 8.782934e-01	k: 8718	n:10000
KS ci ratio: 6.073045e-02	ci left: 2.850816e-01	ci right 3.030385e-01	k: 2940	n:10000
PTPRD   10000 perm   2 sec   (4561 perm/sec)   p_kst 2.940000e-01   p_cons 8.718000e-01   p_joint 9.164000e-01

Outputting figure to mutsig2_images.part000000000141/PTPRD.2_5947_10000_0.294_0.8718_0.9164.png
                gene_name: PTPRD
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 50 percent done.
PUM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.530929e-02	ci left: 8.609022e-01	ci right 8.742829e-01	k: 8677	n:10000
Cons ci ratio: 1.943528e-02	ci left: 7.947624e-01	ci right 8.104609e-01	k: 8027	n:10000
KS ci ratio: 2.969142e-02	ci left: 6.258780e-01	ci right 6.448431e-01	k: 6354	n:10000
PUM2   10000 perm   2 sec   (6472 perm/sec)   p_kst 6.354000e-01   p_cons 8.027000e-01   p_joint 8.677000e-01

Outputting figure to mutsig2_images.part000000000141/PUM2.2_3275_10000_0.6354_0.8027_0.8677.png
                gene_name: PUM2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000141
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 141 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 9878010: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000142> was used as the working directory.
Started at Fri Oct  5 22:53:25 2012
Results reported at Fri Oct  5 22:54:16 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000142.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000142.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 142  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000142.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     46.70 sec.
    Max Memory :       867 MB
    Max Swap   :      3733 MB

    Max Processes  :         7
    Max Threads    :        67

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
142
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 142
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 142: processing genes 12785 - 12875
Calculating significance of each gene.
Using projection method.
12785	R3HDM1	1
12786	R3HDM2	1.681971e-01
12787	R3HDML	1
12788	RAB10	1
12789	RAB11A	7.751905e-02
12790	RAB11B	1
12791	RAB11FIP1	1
12792	RAB11FIP2	1
12793	RAB11FIP3	1
12794	RAB11FIP4	1
12795	RAB11FIP5	1
12796	RAB12	1
12797	RAB13	1
12798	RAB14	1
12799	RAB15	1
12800	RAB17	1
12801	RAB18	1
12802	RAB19	1
12803	RAB1A	1
12804	RAB1B	1
12805	RAB20	1
12806	RAB21	1
12807	RAB22A	1
12808	RAB23	1
12809	RAB24	1
12810	RAB25	1
12811	RAB26	1
12812	RAB27A	1
12813	RAB27B	1
12814	RAB28	1
12815	RAB2A	1
12816	RAB2B	1
12817	RAB30	1
12818	RAB31	1
12819	RAB32	1
12820	RAB33A	1
12821	RAB33B	1
12822	RAB34	1
12823	RAB35	1
12824	RAB36	1
12825	RAB37	1
12826	RAB38	1
12827	RAB39	1
12828	RAB39B	1
12829	RAB3A	1
12830	RAB3B	8.184103e-02
12831	RAB3C	1
12832	RAB3D	1
12833	RAB3GAP1	1.994439e-01
12834	RAB3GAP2	1.078331e-01
12835	RAB3IL1	1
12836	RAB3IP	1
12837	RAB40A	1
12838	RAB40AL	1
12839	RAB40B	1
12840	RAB40C	1
12841	RAB41	1
12842	RAB42	1
12843	RAB43	1
12844	RAB4A	1
12845	RAB4B	1
12846	RAB5A	1
12847	RAB5B	1
12848	RAB5C	4.085308e-02
12849	RAB6A	1
12850	RAB6B	1
12851	RAB6C	1
12852	RAB7A	1
12853	RAB7L1	1
12854	RAB8A	1
12855	RAB8B	1
12856	RAB9A	1
12857	RAB9B	1
12858	RABAC1	4.905756e-02
12859	RABEP1	1
12860	RABEP2	1
12861	RABEPK	1
In gene RABGAP1 the following bins exceed PROBCAP:
    PRAD-G9-6370	categ 6	N = 3310    n = 1	mu =   3.36e-08
12862	RABGAP1	5.919808e-02
12863	RABGAP1L	1
12864	RABGEF1	1
12865	RABGGTA	1
12866	RABGGTB	1
12867	RABIF	1
12868	RABL2A	1
12869	RABL2B	1
12870	RABL3	1
12871	RABL5	1
12872	RAC1	4.261594e-02
12873	RAC2	1
12874	RAC3	1
12875	RACGAP1	1
Done

Running MutSig 2:
Scatter job 142: processing genes 12785 - 12875
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000142
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 142 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1640>
Subject: Job 9878020: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1640>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000143> was used as the working directory.
Started at Fri Oct  5 22:53:51 2012
Results reported at Fri Oct  5 22:55:50 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000143.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000143.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 143  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000143.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    113.42 sec.
    Max Memory :      1904 MB
    Max Swap   :      4651 MB

    Max Processes  :         7
    Max Threads    :        60

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
143
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 143
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 143: processing genes 12876 - 12966
Calculating significance of each gene.
Using projection method.
12876	RAD1	1
12877	RAD17	1
12878	RAD18	1
12879	RAD21	1
12880	RAD23A	1
12881	RAD23B	1
12882	RAD50	1
12883	RAD51	1
12884	RAD51AP1	1
12885	RAD51AP2	1
12886	RAD51C	1
12887	RAD51L1	1
12888	RAD51L3	1
12889	RAD52	1
12890	RAD54B	1
12891	RAD54L	1
12892	RAD54L2	1
12893	RAD9A	1
12894	RAD9B	1
12895	RADIL	1
12896	RAE1	4.565658e-03
12897	RAET1E	1
12898	RAET1G	1
12899	RAET1L	1
12900	RAF1	1
12901	RAG1	5.984112e-02
12902	RAG1AP1	1
12903	RAG2	1
12904	RAGE	1
12905	RAI1	4.165511e-01
In gene RAI14 the following bins exceed PROBCAP:
    PRAD-CH-5794	categ 6	N = 3011    n = 1	mu =   2.02e-07
12906	RAI14	9.702327e-02
12907	RAI2	1
12908	RALA	1
12909	RALB	1
12910	RALBP1	1
12911	RALGAPA1	5.051984e-01
In gene RALGAPA2 the following bins exceed PROBCAP:
    PRAD-EJ-5505	categ 6	N = 5280    n = 1	mu =   1.33e-07
12912	RALGAPA2	1.502871e-01
12913	RALGAPB	1
12914	RALGDS	1
12915	RALGPS1	1
12916	RALGPS2	1
12917	RALY	1
12918	RALYL	1
12919	RAMP1	1
12920	RAMP2	1
12921	RAMP3	1
12922	RAN	1
12923	RANBP1	1
12924	RANBP10	1
12925	RANBP17	2.417159e-01
12926	RANBP2	1
12927	RANBP3	1
12928	RANBP3L	1
12929	RANBP6	1
12930	RANBP9	1
12931	RANGAP1	1
12932	RANGRF	1
12933	RAP1A	1
12934	RAP1B	1
12935	RAP1GAP	1
12936	RAP1GAP2	1
12937	RAP1GDS1	1
12938	RAP2A	1
12939	RAP2B	1
12940	RAP2C	1
12941	RAPGEF1	3.438056e-01
12942	RAPGEF2	2.233312e-01
12943	RAPGEF3	1
12944	RAPGEF4	1
12945	RAPGEF5	1
12946	RAPGEF6	3.547953e-01
12947	RAPGEFL1	1
12948	RAPH1	2.137891e-01
12949	RAPSN	1
12950	RARA	1
12951	RARB	1
12952	RARG	1
12953	RARRES1	1
12954	RARRES2	1
12955	RARRES3	1
12956	RARS	1
12957	RARS2	1
12958	RASA1	1
12959	RASA2	1
12960	RASA3	1
12961	RASAL1	3.106970e-02
12962	RASAL2	5.103376e-02
12963	RASAL3	1
12964	RASD1	1
12965	RASD2	1
12966	RASEF	5.174797e-02
Done

Running MutSig 2:
Scatter job 143: processing genes 12876 - 12966
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
RAE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.126282e-02	ci left: 4.644718e-01	ci right 4.841432e-01	k: 4743	n:10000
Cons ci ratio: 1.749028e-02	ci left: 8.265603e-01	ci right 8.412446e-01	k: 8340	n:10000
KS ci ratio: 2.252227e-01	ci left: 2.608227e-02	ci right 3.279558e-02	k: 293	n:10000
RAE1   10000 perm   2 sec   (6107 perm/sec)   p_kst 2.930000e-02   p_cons 8.340000e-01   p_joint 4.743000e-01

Joint ci ratio: 3.398741e-02	ci left: 3.926022e-01	ci right 4.062270e-01	k: 7988	n:20000
Cons ci ratio: 1.247839e-02	ci left: 8.262393e-01	ci right 8.366641e-01	k: 16630	n:20000
KS ci ratio: 1.589819e-01	ci left: 2.715054e-02	ci right 3.188756e-02	k: 589	n:20000
RAE1   20000 perm   6 sec   (3522 perm/sec)   p_kst 2.945000e-02   p_cons 8.315000e-01   p_joint 3.994000e-01

Joint ci ratio: 5.278585e-03	ci left: 9.458704e-01	ci right 9.509090e-01	k: 28453	n:30000
Cons ci ratio: 1.014234e-02	ci left: 8.284949e-01	ci right 8.369739e-01	k: 24983	n:30000
KS ci ratio: 1.299606e-01	ci left: 2.751748e-02	ci right 3.137436e-02	k: 882	n:30000
RAE1   30000 perm   8 sec   (3899 perm/sec)   p_kst 2.940000e-02   p_cons 8.327667e-01   p_joint 9.484333e-01

Joint ci ratio: 2.644101e-02	ci left: 3.499100e-01	ci right 3.593111e-01	k: 14184	n:40000
Cons ci ratio: 9.074900e-03	ci left: 8.197027e-01	ci right 8.272003e-01	k: 32939	n:40000
KS ci ratio: 1.117373e-01	ci left: 2.817971e-02	ci right 3.153900e-02	k: 1193	n:40000
RAE1   40000 perm   10 sec   (4086 perm/sec)   p_kst 2.982500e-02   p_cons 8.234750e-01   p_joint 3.546000e-01

Joint ci ratio: 2.192476e-02	ci left: 3.857013e-01	ci right 3.942715e-01	k: 19499	n:50000
Cons ci ratio: 8.169102e-03	ci left: 8.182156e-01	ci right 8.249470e-01	k: 41080	n:50000
KS ci ratio: 9.927462e-02	ci left: 2.873679e-02	ci right 3.175808e-02	k: 1511	n:50000
RAE1   50000 perm   12 sec   (4176 perm/sec)   p_kst 3.022000e-02   p_cons 8.216000e-01   p_joint 3.899800e-01

Outputting figure to mutsig2_images.part000000000143/RAE1.2_1151_50000_0.03022_0.8216_0.38998.png
                gene_name: RAE1
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.39 

Current progress: 33 percent done.
RASAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.771208e-02	ci left: 3.932662e-01	ci right 4.125904e-01	k: 4029	n:10000
Cons ci ratio: 6.393634e-02	ci left: 2.643844e-01	ci right 2.819479e-01	k: 2731	n:10000
KS ci ratio: 1.513557e-02	ci left: 8.635571e-01	ci right 8.768264e-01	k: 8703	n:10000
RASAL1   10000 perm   2 sec   (6141 perm/sec)   p_kst 8.703000e-01   p_cons 2.731000e-01   p_joint 4.029000e-01

Outputting figure to mutsig2_images.part000000000143/RASAL1.2_2499_10000_0.8703_0.2731_0.4029.png
                gene_name: RASAL1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 67 percent done.
RASAL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.002234e-02	ci left: 7.850257e-01	ci right 8.010033e-01	k: 7931	n:10000
KS ci ratio: 9.454540e-03	ci left: 9.404542e-01	ci right 9.494843e-01	k: 9451	n:10000
RASAL2   10000 perm   2 sec   (5385 perm/sec)   p_kst 9.451000e-01   p_cons 7.931000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000143/RASAL2.2_3953_10000_0.9451_0.7931_1.png
                gene_name: RASAL2
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000143
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 143 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1644>
Subject: Job 9878026: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1644>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000144> was used as the working directory.
Started at Fri Oct  5 22:53:51 2012
Results reported at Fri Oct  5 22:55:34 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000144.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000144.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 144  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000144.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    101.43 sec.
    Max Memory :      1976 MB
    Max Swap   :      4681 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
144
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 144
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 144: processing genes 12967 - 13056
Calculating significance of each gene.
Using projection method.
12967	RASGEF1A	1
12968	RASGEF1B	1
12969	RASGEF1C	1
12970	RASGRF1	3.101023e-02
12971	RASGRF2	7.080812e-02
12972	RASGRP1	1
12973	RASGRP2	1
12974	RASGRP3	1
12975	RASGRP4	1
12976	RASIP1	1
12977	RASL10A	1
12978	RASL10B	1
12979	RASL11A	1
12980	RASL11B	2.218293e-02
12981	RASL12	1
12982	RASSF1	1
12983	RASSF10	1
12984	RASSF2	1
12985	RASSF3	1
12986	RASSF4	1
12987	RASSF5	1
12988	RASSF6	1
12989	RASSF7	1
12990	RASSF8	1
12991	RASSF9	1
12992	RAVER1	1
12993	RAVER2	1
12994	RAX	1
12995	RAX2	1
12996	RB1	1
12997	RB1CC1	1
12998	RBAK	1
12999	RBBP4	1
13000/18134 13000	RBBP5	1
13001	RBBP6	1
13002	RBBP7	1
13003	RBBP8	1
13004	RBBP9	1
13005	RBCK1	1
13006	RBKS	1
13007	RBL1	1
13008	RBL2	1
13009	RBM10	1
13010	RBM11	1
13011	RBM12	1
13012	RBM12B	2.132698e-01
13013	RBM14	1
13014	RBM15	1.353251e-01
13015	RBM15B	1
13016	RBM16	1
13017	RBM17	1
13018	RBM18	1
13019	RBM19	1
13020	RBM22	1
13021	RBM23	1
13022	RBM24	1.345208e-02
13023	RBM25	1
13024	RBM26	1
13025	RBM27	2.195269e-01
13026	RBM28	1
13027	RBM3	1
13028	RBM33	1
13029	RBM34	1
13030	RBM38	1
13031	RBM39	1
13032	RBM4	1
13033	RBM41	1
13034	RBM42	1
13035	RBM43	1
13036	RBM44	1
13037	RBM45	1
13038	RBM46	1
13039	RBM47	1
13040	RBM4B	1
13041	RBM5	1
13042	RBM6	1
13043	RBM7	1
13044	RBM8A	1
13045	RBM9	1
13046	RBMS1	1
13047	RBMS2	1.105911e-01
13048	RBMS3	1
13049	RBMX	8.393739e-02
13050	RBMX2	1
13051	RBMXL1	1
13052	RBMXL2	1
13053	RBP1	1
13054	RBP2	1
13055	RBP3	1
13056	RBP4	1
Done

Running MutSig 2:
Scatter job 144: processing genes 12967 - 13056
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
RASGRF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.107859e-02	ci left: 9.207974e-01	ci right 9.311528e-01	k: 9261	n:10000
Cons ci ratio: 6.237935e-02	ci left: 2.741854e-01	ci right 2.919411e-01	k: 2830	n:10000
KS ci ratio: 1.239972e-02	ci left: 9.032959e-01	ci right 9.146645e-01	k: 9091	n:10000
RASGRF1   10000 perm   2 sec   (5151 perm/sec)   p_kst 9.091000e-01   p_cons 2.830000e-01   p_joint 9.261000e-01

Outputting figure to mutsig2_images.part000000000144/RASGRF1.2_3934_10000_0.9091_0.283_0.9261.png
                gene_name: RASGRF1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 50 percent done.
RASGRF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.040082e-02	ci left: 9.292663e-01	ci right 9.390789e-01	k: 9343	n:10000
KS ci ratio: 2.995464e-02	ci left: 6.217570e-01	ci right 6.407665e-01	k: 6313	n:10000
RASGRF2   10000 perm   2 sec   (5562 perm/sec)   p_kst 6.313000e-01   p_cons 9.343000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000144/RASGRF2.2_3822_10000_0.6313_0.9343_1.png
                gene_name: RASGRF2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000144
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 144 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1707>
Subject: Job 9878037: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1707>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000145> was used as the working directory.
Started at Fri Oct  5 22:53:51 2012
Results reported at Fri Oct  5 22:55:26 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000145.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000145.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 145  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000145.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    107.75 sec.
    Max Memory :      1127 MB
    Max Swap   :      3953 MB

    Max Processes  :         7
    Max Threads    :        55

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
145
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 145
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 145: processing genes 13057 - 13147
Calculating significance of each gene.
Using projection method.
13057	RBP5	1
13058	RBP7	1
13059	RBPJ	1
13060	RBPJL	1
13061	RBPMS	1
13062	RBPMS2	1
13063	RBX1	1
In gene RC3H1 the following bins exceed PROBCAP:
    PRAD-G9-6494	categ 6	N = 3478    n = 1	mu =   2.35e-07
13064	RC3H1	1.290515e-01
13065	RC3H2	7.320377e-02
13066	RCAN1	1
13067	RCAN2	1
13068	RCAN3	1
13069	RCBTB1	1
13070	RCBTB2	1.049826e-03
13071	RCC1	1
13072	RCC2	1
13073	RCCD1	1
13074	RCE1	1
13075	RCHY1	1
13076	RCL1	1
13077	RCN1	1
13078	RCN2	1
13079	RCN3	1
13080	RCOR1	1
13081	RCOR2	1
13082	RCOR3	1
13083	RCSD1	1
13084	RCVRN	1
13085	RD3	1
13086	RDBP	1
13087	RDH10	1
13088	RDH11	1
13089	RDH12	1
13090	RDH13	1
13091	RDH14	1
13092	RDH16	1
13093	RDH5	1
13094	RDH8	3.760326e-02
13095	RDM1	1
13096	RDX	1
13097	REC8	1
13098	RECK	1
13099	RECQL	1
13100	RECQL4	1
13101	RECQL5	1
13102	REEP1	1
13103	REEP2	1
13104	REEP3	1
13105	REEP4	4.737917e-02
13106	REEP5	1
13107	REEP6	1
13108	REG1A	1
13109	REG1B	1
13110	REG3A	1
13111	REG3G	5.600876e-02
13112	REG4	1
13113	REL	1
13114	RELA	1
13115	RELB	1
13116	RELL1	1
13117	RELL2	1
13118	RELN	5.823903e-01
13119	RELT	1
13120	REM1	1
13121	REM2	1
13122	REN	1
In gene RENBP the following bins exceed PROBCAP:
    PRAD-CH-5745	categ 6	N = 1163    n = 1	mu =   1.32e-07
13123	RENBP	1.896913e-02
13124	REP15	1
13125	REPIN1	1
13126	REPS1	1
13127	REPS2	1
13128	RER1	1
13129	RERE	1.787292e-01
13130	RERG	1
13131	RERGL	1
13132	REST	2.928385e-01
13133	RET	1
13134	RETN	1
13135	RETNLB	1
13136	RETSAT	2.099296e-01
13137	REV1	2.269054e-01
13138	REV3L	1
13139	REXO1	1
13140	REXO2	1
13141	REXO4	1
13142	RFC1	1
13143	RFC2	1
13144	RFC3	1
13145	RFC4	1
13146	RFC5	1
13147	RFESD	1
Done

Running MutSig 2:
Scatter job 145: processing genes 13057 - 13147
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
RCBTB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.218348e-02	ci left: 5.876103e-01	ci right 6.069330e-01	k: 5973	n:10000
Cons ci ratio: 1.307051e-02	ci left: 8.939531e-01	ci right 9.058128e-01	k: 9000	n:10000
KS ci ratio: 5.058591e-02	ci left: 3.655984e-01	ci right 3.846744e-01	k: 3751	n:10000
RCBTB2   10000 perm   2 sec   (6157 perm/sec)   p_kst 3.751000e-01   p_cons 9.000000e-01   p_joint 5.973000e-01

Outputting figure to mutsig2_images.part000000000145/RCBTB2.3_1704_10000_0.3751_0.9_0.5973.png
                gene_name: RCBTB2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000145
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 145 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1649>
Subject: Job 9878054: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1649>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000146> was used as the working directory.
Started at Fri Oct  5 22:53:51 2012
Results reported at Fri Oct  5 22:55:36 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000146.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000146.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 146  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000146.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    101.12 sec.
    Max Memory :      1935 MB
    Max Swap   :      4631 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
146
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 146
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 146: processing genes 13148 - 13238
Calculating significance of each gene.
Using projection method.
13148	RFFL	1
13149	RFK	1.950066e-02
13150	RFNG	1
13151	RFPL1	9.231229e-03
13152	RFPL2	1
13153	RFPL3	1
13154	RFPL4B	1
13155	RFT1	1
13156	RFTN1	1
13157	RFTN2	1
13158	RFWD2	1
13159	RFWD3	1
13160	RFX1	1
13161	RFX2	1
13162	RFX3	1
13163	RFX4	1
13164	RFX5	1
13165	RFX6	1
13166	RFX7	1
13167	RFXANK	1
13168	RFXAP	1
13169	RG9MTD1	1
13170	RG9MTD2	3.946057e-02
13171	RG9MTD3	1
13172	RGAG1	1
13173	RGAG4	1
13174	RGL1	1
13175	RGL2	1
13176	RGL3	1
13177	RGL4	1
13178	RGMA	1
13179	RGMB	1
13180	RGN	1
13181	RGNEF	1
13182	RGP1	1
13183	RGPD3	1
13184	RGPD4	1
13185	RGPD8	1
13186	RGR	1
13187	RGS1	1
13188	RGS10	1
13189	RGS11	1
13190	RGS12	1
13191	RGS13	1
13192	RGS14	1
13193	RGS16	1
13194	RGS17	1
13195	RGS18	1
13196	RGS19	1
13197	RGS2	1
13198	RGS20	1
13199	RGS21	1
13200	RGS22	1
13201	RGS3	1
13202	RGS4	1
13203	RGS5	1
13204	RGS6	1
13205	RGS7	1
13206	RGS7BP	1
13207	RGS8	1
13208	RGS9	1
13209	RGS9BP	1
13210	RHAG	1
In gene RHBDD1 the following bins exceed PROBCAP:
    PRAD-CH-5761	categ 6	N = 972     n = 1	mu =   2.99e-07
13211	RHBDD1	3.814820e-02
13212	RHBDD2	1
13213	RHBDD3	1
13214	RHBDF1	1
13215	RHBDF2	1
13216	RHBDL1	1
13217	RHBDL2	1
13218	RHBDL3	1
13219	RHBG	1
13220	RHCE	1
13221	RHCG	1
13222	RHD	1
13223	RHEB	1
13224	RHEBL1	1
13225	RHO	1.303845e-01
13226	RHOA	1
13227	RHOB	1
13228	RHOBTB1	1
13229	RHOBTB2	1
13230	RHOBTB3	1
13231	RHOC	1
13232	RHOD	1
13233	RHOF	1
13234	RHOG	1
13235	RHOH	1
13236	RHOJ	1
13237	RHOQ	1
13238	RHOT1	1
Done

Running MutSig 2:
Scatter job 146: processing genes 13148 - 13238
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
RHBDD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.014497e-01	ci left: 1.232714e-01	ci right 1.365450e-01	k: 1298	n:10000
Cons ci ratio: 7.110101e-02	ci left: 2.247431e-01	ci right 2.414127e-01	k: 2330	n:10000
KS ci ratio: 1.795348e-01	ci left: 4.140268e-02	ci right 4.966468e-02	k: 454	n:10000
RHBDD1   10000 perm   2 sec   (6249 perm/sec)   p_kst 4.540000e-02   p_cons 2.330000e-01   p_joint 1.298000e-01

Joint ci ratio: 7.270505e-02	ci left: 1.222671e-01	ci right 1.315416e-01	k: 2537	n:20000
Cons ci ratio: 4.968611e-02	ci left: 2.314175e-01	ci right 2.432590e-01	k: 4746	n:20000
KS ci ratio: 1.245349e-01	ci left: 4.425346e-02	ci right 5.017908e-02	k: 943	n:20000
RHBDD1   20000 perm   6 sec   (3395 perm/sec)   p_kst 4.715000e-02   p_cons 2.373000e-01   p_joint 1.268500e-01

Joint ci ratio: 8.735481e-02	ci left: 6.014581e-02	ci right 6.567254e-02	k: 1886	n:30000
Cons ci ratio: 4.047736e-02	ci left: 2.333223e-01	ci right 2.429951e-01	k: 7144	n:30000
KS ci ratio: 1.013455e-01	ci left: 4.508777e-02	ci right 4.993367e-02	k: 1424	n:30000
RHBDD1   30000 perm   8 sec   (3761 perm/sec)   p_kst 4.746667e-02   p_cons 2.381333e-01   p_joint 6.286667e-02

Joint ci ratio: 5.059200e-02	ci left: 1.271886e-01	ci right 1.338152e-01	k: 5219	n:40000
Cons ci ratio: 3.504402e-02	ci left: 2.340818e-01	ci right 2.424563e-01	k: 9530	n:40000
KS ci ratio: 8.750253e-02	ci left: 4.568071e-02	ci right 4.988525e-02	k: 1910	n:40000
RHBDD1   40000 perm   10 sec   (3946 perm/sec)   p_kst 4.775000e-02   p_cons 2.382500e-01   p_joint 1.304750e-01

Outputting figure to mutsig2_images.part000000000146/RHBDD1.2_972_40000_0.04775_0.23825_0.13048.png
                gene_name: RHBDD1
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.048 
        ci_ks_bounds_left: 0.046 
       ci_ks_bounds_right: 0.050 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000146
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 146 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 9878078: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000147> was used as the working directory.
Started at Fri Oct  5 22:54:28 2012
Results reported at Fri Oct  5 23:11:59 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000147.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000147.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 147  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000147.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1049.47 sec.
    Max Memory :      1954 MB
    Max Swap   :      4638 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
147
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 147
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 147: processing genes 13239 - 13328
Calculating significance of each gene.
Using projection method.
13239	RHOT2	1
13240	RHOU	1
13241	RHOV	1
13242	RHOXF1	1
13243	RHOXF2	1
13244	RHOXF2B	1
13245	RHPN1	1
13246	RHPN2	1.748805e-01
13247	RIBC1	1
13248	RIBC2	1
13249	RIC3	1
13250	RIC8A	1
13251	RIC8B	1
13252	RICH2	1
13253	RICTOR	1
13254	RIF1	1
13255	RILP	1
13256	RILPL1	1
13257	RILPL2	1
13258	RIMBP2	1
13259	RIMBP3	1.172680e-01
13260	RIMKLA	1
13261	RIMKLB	1
13262	RIMS1	1
13263	RIMS2	1
13264	RIMS3	1
13265	RIMS4	1
13266	RIN1	1
13267	RIN2	1
13268	RIN3	1
13269	RING1	1
13270	RINL	1
13271	RINT1	2.441530e-01
13272	RIOK1	8.976954e-02
13273	RIOK2	1
13274	RIOK3	1
13275	RIPK1	1.435791e-01
13276	RIPK2	1.706908e-02
13277	RIPK3	1
13278	RIPK4	1
13279	RIPPLY1	1
13280	RIPPLY2	1
13281	RIT1	1
13282	RIT2	1
13283	RLBP1	1
13284	RLF	1
13285	RLIM	1.450469e-02
13286	RLN1	1
13287	RLN2	1
13288	RLN3	1
13289	RLTPR	1
13290	RMI1	1
13291	RMND1	1
13292	RMND5A	1
13293	RMND5B	1
13294	RNASE1	1
13295	RNASE10	1
13296	RNASE11	1
13297	RNASE12	1
13298	RNASE13	1
13299	RNASE2	1
13300	RNASE3	1
13301	RNASE4	1
13302	RNASE6	1
13303	RNASE7	1
13304	RNASE8	1
13305	RNASE9	1
13306	RNASEH1	1
13307	RNASEH2A	1
13308	RNASEH2B	1
13309	RNASEH2C	2.146769e-02
13310	RNASEK	1
13311	RNASEL	1
13312	RNASEN	1
13313	RNASET2	1
13314	RND1	1
13315	RND2	1
13316	RND3	1
13317	RNF10	1
13318	RNF103	1
13319	RNF11	1
13320	RNF111	1
13321	RNF112	1
13322	RNF113A	1
13323	RNF113B	1
13324	RNF114	1
13325	RNF115	1
13326	RNF121	1
13327	RNF122	1
13328	RNF123	1
Done

Running MutSig 2:
Scatter job 147: processing genes 13239 - 13328
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
RLIM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.264461e-01	ci left: 2.690467e-03	ci right 5.212103e-03	k: 38	n:10000
Cons ci ratio: 2.102486e-02	ci left: 7.683064e-01	ci right 7.847323e-01	k: 7766	n:10000
KS ci ratio: 9.230750e-01	ci left: 9.906147e-04	ci right 2.720474e-03	k: 17	n:10000
RLIM   10000 perm   1 sec   (7084 perm/sec)   p_kst 1.700000e-03   p_cons 7.766000e-01   p_joint 3.800000e-03

Joint ci ratio: 7.151360e-01	ci left: 9.712961e-04	ci right 2.081783e-03	k: 29	n:20000
Cons ci ratio: 1.486247e-02	ci left: 7.708633e-01	ci right 7.824562e-01	k: 15534	n:20000
KS ci ratio: 7.538762e-01	ci left: 8.493734e-04	ci right 1.904225e-03	k: 26	n:20000
RLIM   20000 perm   5 sec   (4156 perm/sec)   p_kst 1.300000e-03   p_cons 7.767000e-01   p_joint 1.450000e-03

Joint ci ratio: 5.775196e-01	ci left: 1.094314e-03	ci right 2.006609e-03	k: 45	n:30000
Cons ci ratio: 1.218060e-02	ci left: 7.706345e-01	ci right 7.801121e-01	k: 23262	n:30000
KS ci ratio: 6.272838e-01	ci left: 8.965198e-04	ci right 1.738189e-03	k: 38	n:30000
RLIM   30000 perm   7 sec   (4572 perm/sec)   p_kst 1.266667e-03   p_cons 7.754000e-01   p_joint 1.500000e-03

Joint ci ratio: 5.234587e-01	ci left: 1.036001e-03	ci right 1.789380e-03	k: 55	n:40000
Cons ci ratio: 1.047675e-02	ci left: 7.736682e-01	ci right 7.818414e-01	k: 31111	n:40000
KS ci ratio: 5.596499e-01	ci left: 8.849137e-04	ci right 1.590715e-03	k: 48	n:40000
RLIM   40000 perm   8 sec   (4784 perm/sec)   p_kst 1.200000e-03   p_cons 7.777750e-01   p_joint 1.375000e-03

Joint ci ratio: 4.648834e-01	ci left: 1.091526e-03	ci right 1.768490e-03	k: 70	n:50000
Cons ci ratio: 9.374347e-03	ci left: 7.739691e-01	ci right 7.812787e-01	k: 38882	n:50000
KS ci ratio: 4.935574e-01	ci left: 9.508290e-04	ci right 1.589346e-03	k: 62	n:50000
RLIM   50000 perm   10 sec   (4880 perm/sec)   p_kst 1.240000e-03   p_cons 7.776400e-01   p_joint 1.400000e-03

Joint ci ratio: 4.325921e-01	ci left: 1.072235e-03	ci right 1.677652e-03	k: 81	n:60000
Cons ci ratio: 8.546595e-03	ci left: 7.747367e-01	ci right 7.814031e-01	k: 46685	n:60000
KS ci ratio: 4.616953e-01	ci left: 9.243052e-04	ci right 1.492383e-03	k: 71	n:60000
RLIM   60000 perm   12 sec   (4927 perm/sec)   p_kst 1.183333e-03   p_cons 7.780833e-01   p_joint 1.350000e-03

Joint ci ratio: 4.152520e-01	ci left: 1.008384e-03	ci right 1.548609e-03	k: 88	n:70000
Cons ci ratio: 7.919426e-03	ci left: 7.746873e-01	ci right 7.808610e-01	k: 54445	n:70000
KS ci ratio: 4.464765e-01	ci left: 8.555118e-04	ci right 1.358748e-03	k: 76	n:70000
RLIM   70000 perm   14 sec   (4932 perm/sec)   p_kst 1.085714e-03   p_cons 7.777857e-01   p_joint 1.257143e-03

Joint ci ratio: 3.937285e-01	ci left: 9.946227e-04	ci right 1.492683e-03	k: 98	n:80000
Cons ci ratio: 7.403619e-03	ci left: 7.750913e-01	ci right 7.808635e-01	k: 62239	n:80000
KS ci ratio: 4.224746e-01	ci left: 8.487727e-04	ci right 1.313633e-03	k: 85	n:80000
RLIM   80000 perm   16 sec   (4912 perm/sec)   p_kst 1.062500e-03   p_cons 7.779875e-01   p_joint 1.225000e-03

Joint ci ratio: 2.559236e-01	ci left: 2.267470e-03	ci right 2.943003e-03	k: 233	n:90000
Cons ci ratio: 6.979047e-03	ci left: 7.753150e-01	ci right 7.807560e-01	k: 70024	n:90000
KS ci ratio: 4.084770e-01	ci left: 8.141593e-04	ci right 1.241277e-03	k: 91	n:90000
RLIM   90000 perm   18 sec   (4885 perm/sec)   p_kst 1.011111e-03   p_cons 7.780444e-01   p_joint 2.588889e-03

Joint ci ratio: 3.561462e-01	ci left: 9.950163e-04	ci right 1.434737e-03	k: 120	n:100000
Cons ci ratio: 6.623290e-03	ci left: 7.753308e-01	ci right 7.804931e-01	k: 77792	n:100000
KS ci ratio: 3.841858e-01	ci left: 8.407948e-04	ci right 1.249038e-03	k: 103	n:100000
RLIM   100000 perm   21 sec   (4812 perm/sec)   p_kst 1.030000e-03   p_cons 7.779200e-01   p_joint 1.200000e-03

Joint ci ratio: 3.449328e-01	ci left: 9.708832e-04	ci right 1.383415e-03	k: 128	n:110000
Cons ci ratio: 6.323731e-03	ci left: 7.749755e-01	ci right 7.799008e-01	k: 85519	n:110000
KS ci ratio: 3.718805e-01	ci left: 8.219479e-04	ci right 1.205147e-03	k: 110	n:110000
RLIM   110000 perm   23 sec   (4766 perm/sec)   p_kst 1.000000e-03   p_cons 7.774455e-01   p_joint 1.163636e-03

Joint ci ratio: 3.384459e-01	ci left: 9.280642e-04	ci right 1.313366e-03	k: 133	n:120000
Cons ci ratio: 6.049912e-03	ci left: 7.753450e-01	ci right 7.800583e-01	k: 93325	n:120000
KS ci ratio: 3.669657e-01	ci left: 7.761277e-04	ci right 1.132035e-03	k: 113	n:120000
RLIM   120000 perm   26 sec   (4699 perm/sec)   p_kst 9.416667e-04   p_cons 7.777083e-01   p_joint 1.108333e-03

Joint ci ratio: 3.242380e-01	ci left: 9.413080e-04	ci right 1.312292e-03	k: 145	n:130000
Cons ci ratio: 5.802232e-03	ci left: 7.760551e-01	ci right 7.805787e-01	k: 101182	n:130000
KS ci ratio: 3.518571e-01	ci left: 7.864062e-04	ci right 1.128792e-03	k: 123	n:130000
RLIM   130000 perm   28 sec   (4645 perm/sec)   p_kst 9.461538e-04   p_cons 7.783231e-01   p_joint 1.115385e-03

Joint ci ratio: 3.146865e-01	ci left: 9.332034e-04	ci right 1.287981e-03	k: 154	n:140000
Cons ci ratio: 5.586914e-03	ci left: 7.764015e-01	ci right 7.807584e-01	k: 109002	n:140000
KS ci ratio: 3.410301e-01	ci left: 7.824059e-04	ci right 1.110260e-03	k: 131	n:140000
RLIM   140000 perm   31 sec   (4585 perm/sec)   p_kst 9.357143e-04   p_cons 7.785857e-01   p_joint 1.100000e-03

Joint ci ratio: 3.031688e-01	ci left: 9.447914e-04	ci right 1.288295e-03	k: 166	n:150000
Cons ci ratio: 5.392343e-03	ci left: 7.768046e-01	ci right 7.810113e-01	k: 116837	n:150000
KS ci ratio: 3.311447e-01	ci left: 7.790789e-04	ci right 1.094060e-03	k: 139	n:150000
RLIM   150000 perm   33 sec   (4515 perm/sec)   p_kst 9.266667e-04   p_cons 7.789133e-01   p_joint 1.106667e-03

Joint ci ratio: 1.933462e-01	ci left: 2.314758e-03	ci right 2.816038e-03	k: 409	n:160000
Cons ci ratio: 5.217620e-03	ci left: 7.771030e-01	ci right 7.811744e-01	k: 124663	n:160000
KS ci ratio: 3.167607e-01	ci left: 8.050345e-04	ci right 1.113510e-03	k: 152	n:160000
RLIM   160000 perm   36 sec   (4460 perm/sec)   p_kst 9.500000e-04   p_cons 7.791438e-01   p_joint 2.556250e-03

Joint ci ratio: 1.870628e-01	ci left: 2.335463e-03	ci right 2.822924e-03	k: 437	n:170000
Cons ci ratio: 5.062132e-03	ci left: 7.771439e-01	ci right 7.810937e-01	k: 132451	n:170000
KS ci ratio: 3.087920e-01	ci left: 8.010450e-04	ci right 1.098751e-03	k: 160	n:170000
RLIM   170000 perm   39 sec   (4407 perm/sec)   p_kst 9.411765e-04   p_cons 7.791235e-01   p_joint 2.570588e-03

Joint ci ratio: 1.819429e-01	ci left: 2.338190e-03	ci right 2.811391e-03	k: 462	n:180000
Cons ci ratio: 4.925244e-03	ci left: 7.767973e-01	ci right 7.806382e-01	k: 140170	n:180000
KS ci ratio: 3.022926e-01	ci left: 7.924499e-04	ci right 1.079571e-03	k: 167	n:180000
RLIM   180000 perm   41 sec   (4354 perm/sec)   p_kst 9.277778e-04   p_cons 7.787222e-01   p_joint 2.566667e-03

Joint ci ratio: 2.928557e-01	ci left: 8.043168e-04	ci right 1.084954e-03	k: 178	n:190000
Cons ci ratio: 4.792359e-03	ci left: 7.769585e-01	ci right 7.806961e-01	k: 147978	n:190000
KS ci ratio: 2.928557e-01	ci left: 8.043168e-04	ci right 1.084954e-03	k: 178	n:190000
RLIM   190000 perm   44 sec   (4299 perm/sec)   p_kst 9.368421e-04   p_cons 7.788316e-01   p_joint 9.368421e-04

Joint ci ratio: 1.708577e-01	ci left: 2.400702e-03	ci right 2.853905e-03	k: 524	n:200000
Cons ci ratio: 4.669747e-03	ci left: 7.770998e-01	ci right 7.807421e-01	k: 155785	n:200000
KS ci ratio: 2.827651e-01	ci left: 8.244117e-04	ci right 1.100382e-03	k: 191	n:200000
RLIM   200000 perm   47 sec   (4238 perm/sec)   p_kst 9.550000e-04   p_cons 7.789250e-01   p_joint 2.620000e-03

Joint ci ratio: 1.936422e-01	ci left: 1.759044e-03	ci right 2.140628e-03	k: 408	n:210000
Cons ci ratio: 4.558167e-03	ci left: 7.770711e-01	ci right 7.806259e-01	k: 163559	n:210000
KS ci ratio: 2.743209e-01	ci left: 8.383075e-04	ci right 1.109105e-03	k: 203	n:210000
RLIM   210000 perm   50 sec   (4182 perm/sec)   p_kst 9.666667e-04   p_cons 7.788524e-01   p_joint 1.942857e-03

Joint ci ratio: 1.886343e-01	ci left: 1.774304e-03	ci right 2.148104e-03	k: 430	n:220000
Cons ci ratio: 4.454515e-03	ci left: 7.770232e-01	ci right 7.804967e-01	k: 171328	n:220000
KS ci ratio: 2.665906e-01	ci left: 8.510511e-04	ci right 1.116925e-03	k: 215	n:220000
RLIM   220000 perm   53 sec   (4130 perm/sec)   p_kst 9.772727e-04   p_cons 7.787636e-01   p_joint 1.954545e-03

Joint ci ratio: 1.846093e-01	ci left: 1.775910e-03	ci right 2.141171e-03	k: 449	n:230000
Cons ci ratio: 4.357131e-03	ci left: 7.770196e-01	ci right 7.804169e-01	k: 179106	n:230000
KS ci ratio: 2.577870e-01	ci left: 8.749827e-04	ci right 1.137854e-03	k: 230	n:230000
RLIM   230000 perm   56 sec   (4078 perm/sec)   p_kst 1.000000e-03   p_cons 7.787217e-01   p_joint 1.952174e-03

Joint ci ratio: 1.802547e-01	ci left: 1.789396e-03	ci right 2.147802e-03	k: 471	n:240000
Cons ci ratio: 4.269889e-03	ci left: 7.766912e-01	ci right 7.800188e-01	k: 186806	n:240000
KS ci ratio: 2.508242e-01	ci left: 8.892408e-04	ci right 1.148053e-03	k: 243	n:240000
RLIM   240000 perm   60 sec   (4028 perm/sec)   p_kst 1.012500e-03   p_cons 7.783583e-01   p_joint 1.962500e-03

Joint ci ratio: 1.781934e-01	ci left: 1.759844e-03	ci right 2.107865e-03	k: 482	n:250000
Cons ci ratio: 4.185733e-03	ci left: 7.765502e-01	ci right 7.798114e-01	k: 194546	n:250000
KS ci ratio: 2.468118e-01	ci left: 8.836757e-04	ci right 1.136123e-03	k: 251	n:250000
RLIM   250000 perm   63 sec   (3979 perm/sec)   p_kst 1.004000e-03   p_cons 7.781840e-01   p_joint 1.928000e-03

Joint ci ratio: 1.488173e-01	ci left: 2.463436e-03	ci right 2.863163e-03	k: 691	n:260000
Cons ci ratio: 4.103070e-03	ci left: 7.766983e-01	ci right 7.798955e-01	k: 202358	n:260000
KS ci ratio: 2.411363e-01	ci left: 8.930213e-04	ci right 1.141395e-03	k: 263	n:260000
RLIM   260000 perm   66 sec   (3929 perm/sec)   p_kst 1.011538e-03   p_cons 7.783000e-01   p_joint 2.657692e-03

Joint ci ratio: 1.464052e-01	ci left: 2.454236e-03	ci right 2.845451e-03	k: 714	n:270000
Cons ci ratio: 4.027753e-03	ci left: 7.766095e-01	ci right 7.797475e-01	k: 210109	n:270000
KS ci ratio: 2.375647e-01	ci left: 8.877990e-04	ci right 1.130525e-03	k: 271	n:270000
RLIM   270000 perm   70 sec   (3883 perm/sec)   p_kst 1.003704e-03   p_cons 7.781815e-01   p_joint 2.644444e-03

Joint ci ratio: 1.442046e-01	ci left: 2.442298e-03	ci right 2.825255e-03	k: 736	n:280000
Cons ci ratio: 3.956722e-03	ci left: 7.765025e-01	ci right 7.795846e-01	k: 217853	n:280000
KS ci ratio: 2.337298e-01	ci left: 8.863371e-04	ci right 1.124186e-03	k: 280	n:280000
RLIM   280000 perm   73 sec   (3835 perm/sec)   p_kst 1.000000e-03   p_cons 7.780464e-01   p_joint 2.628571e-03

Joint ci ratio: 1.408957e-01	ci left: 2.474469e-03	ci right 2.852820e-03	k: 771	n:290000
Cons ci ratio: 3.887301e-03	ci left: 7.765832e-01	ci right 7.796113e-01	k: 225649	n:290000
KS ci ratio: 2.285027e-01	ci left: 8.980068e-04	ci right 1.132838e-03	k: 293	n:290000
RLIM   290000 perm   77 sec   (3789 perm/sec)   p_kst 1.010345e-03   p_cons 7.781000e-01   p_joint 2.658621e-03

Joint ci ratio: 1.384078e-01	ci left: 2.482060e-03	ci right 2.854317e-03	k: 799	n:300000
Cons ci ratio: 3.820967e-03	ci left: 7.766990e-01	ci right 7.796757e-01	k: 233457	n:300000
KS ci ratio: 2.258313e-01	ci left: 8.900784e-04	ci right 1.119737e-03	k: 300	n:300000
RLIM   300000 perm   80 sec   (3737 perm/sec)   p_kst 1.000000e-03   p_cons 7.781900e-01   p_joint 2.663333e-03

Joint ci ratio: 1.367109e-01	ci left: 2.464288e-03	ci right 2.828980e-03	k: 819	n:310000
Cons ci ratio: 3.758338e-03	ci left: 7.767689e-01	ci right 7.796969e-01	k: 241253	n:310000
KS ci ratio: 2.218142e-01	ci left: 8.948611e-04	ci right 1.121086e-03	k: 311	n:310000
RLIM   310000 perm   84 sec   (3694 perm/sec)   p_kst 1.003226e-03   p_cons 7.782355e-01   p_joint 2.641935e-03

Joint ci ratio: 1.340390e-01	ci left: 2.486913e-03	ci right 2.847187e-03	k: 852	n:320000
Cons ci ratio: 3.698658e-03	ci left: 7.768379e-01	ci right 7.797196e-01	k: 249050	n:320000
KS ci ratio: 2.183428e-01	ci left: 8.964242e-04	ci right 1.119022e-03	k: 321	n:320000
RLIM   320000 perm   88 sec   (3649 perm/sec)   p_kst 1.003125e-03   p_cons 7.782813e-01   p_joint 2.662500e-03

Joint ci ratio: 1.318915e-01	ci left: 2.493579e-03	ci right 2.848577e-03	k: 880	n:330000
Cons ci ratio: 3.643907e-03	ci left: 7.766966e-01	ci right 7.795349e-01	k: 256779	n:330000
KS ci ratio: 2.147059e-01	ci left: 9.007859e-04	ci right 1.120250e-03	k: 332	n:330000
RLIM   330000 perm   91 sec   (3608 perm/sec)   p_kst 1.006061e-03   p_cons 7.781182e-01   p_joint 2.666667e-03

Joint ci ratio: 1.295586e-01	ci left: 2.511280e-03	ci right 2.861988e-03	k: 912	n:340000
Cons ci ratio: 3.590782e-03	ci left: 7.766346e-01	ci right 7.794312e-01	k: 264532	n:340000
KS ci ratio: 2.115530e-01	ci left: 9.021342e-04	ci right 1.118280e-03	k: 342	n:340000
RLIM   340000 perm   95 sec   (3566 perm/sec)   p_kst 1.005882e-03   p_cons 7.780353e-01   p_joint 2.682353e-03

Joint ci ratio: 1.270758e-01	ci left: 2.539087e-03	ci right 2.886371e-03	k: 948	n:350000
Cons ci ratio: 3.541349e-03	ci left: 7.764362e-01	ci right 7.791935e-01	k: 272236	n:350000
KS ci ratio: 2.082400e-01	ci left: 9.061358e-04	ci right 1.119407e-03	k: 353	n:350000
RLIM   350000 perm   99 sec   (3525 perm/sec)   p_kst 1.008571e-03   p_cons 7.778171e-01   p_joint 2.708571e-03

Joint ci ratio: 1.251772e-01	ci left: 2.546571e-03	ci right 2.889289e-03	k: 977	n:360000
Cons ci ratio: 3.491850e-03	ci left: 7.764523e-01	ci right 7.791710e-01	k: 280013	n:360000
KS ci ratio: 2.050779e-01	ci left: 9.099399e-04	ci right 1.120447e-03	k: 364	n:360000
RLIM   360000 perm   103 sec   (3485 perm/sec)   p_kst 1.011111e-03   p_cons 7.778139e-01   p_joint 2.713889e-03

Joint ci ratio: 1.238556e-01	ci left: 2.532732e-03	ci right 2.869725e-03	k: 998	n:370000
Cons ci ratio: 3.441919e-03	ci left: 7.767143e-01	ci right 7.793949e-01	k: 287881	n:370000
KS ci ratio: 2.028673e-01	ci left: 9.058641e-04	ci right 1.112890e-03	k: 372	n:370000
RLIM   370000 perm   107 sec   (3446 perm/sec)   p_kst 1.005405e-03   p_cons 7.780568e-01   p_joint 2.697297e-03

Joint ci ratio: 1.219175e-01	ci left: 2.547705e-03	ci right 2.881003e-03	k: 1030	n:380000
Cons ci ratio: 3.396757e-03	ci left: 7.766884e-01	ci right 7.793337e-01	k: 295645	n:380000
KS ci ratio: 1.991630e-01	ci left: 9.170140e-04	ci right 1.122296e-03	k: 386	n:380000
RLIM   380000 perm   112 sec   (3405 perm/sec)   p_kst 1.015789e-03   p_cons 7.780132e-01   p_joint 2.710526e-03

Joint ci ratio: 1.403081e-01	ci left: 1.857266e-03	ci right 2.139959e-03	k: 778	n:390000
Cons ci ratio: 3.354100e-03	ci left: 7.765844e-01	ci right 7.791961e-01	k: 303378	n:390000
KS ci ratio: 1.971364e-01	ci left: 9.129957e-04	ci right 1.115049e-03	k: 394	n:390000
RLIM   390000 perm   116 sec   (3368 perm/sec)   p_kst 1.010256e-03   p_cons 7.778923e-01   p_joint 1.994872e-03

Joint ci ratio: 1.388022e-01	ci left: 1.851850e-03	ci right 2.130443e-03	k: 795	n:400000
Cons ci ratio: 3.311906e-03	ci left: 7.766011e-01	ci right 7.791799e-01	k: 311157	n:400000
KS ci ratio: 1.949285e-01	ci left: 9.115665e-04	ci right 1.110776e-03	k: 403	n:400000
RLIM   400000 perm   120 sec   (3330 perm/sec)   p_kst 1.007500e-03   p_cons 7.778925e-01   p_joint 1.987500e-03

Joint ci ratio: 1.372593e-01	ci left: 1.849069e-03	ci right 2.123899e-03	k: 813	n:410000
Cons ci ratio: 3.268495e-03	ci left: 7.769105e-01	ci right 7.794563e-01	k: 319056	n:410000
KS ci ratio: 1.930272e-01	ci left: 9.078976e-04	ci right 1.104142e-03	k: 411	n:410000
RLIM   410000 perm   124 sec   (3293 perm/sec)   p_kst 1.002439e-03   p_cons 7.781854e-01   p_joint 1.982927e-03

Joint ci ratio: 1.356850e-01	ci left: 1.848737e-03	ci right 2.120112e-03	k: 832	n:420000
Cons ci ratio: 3.229480e-03	ci left: 7.769118e-01	ci right 7.794272e-01	k: 326832	n:420000
KS ci ratio: 1.907265e-01	ci left: 9.089468e-04	ci right 1.102805e-03	k: 421	n:420000
RLIM   420000 perm   129 sec   (3249 perm/sec)   p_kst 1.002381e-03   p_cons 7.781714e-01   p_joint 1.980952e-03

Joint ci ratio: 1.333817e-01	ci left: 1.870917e-03	ci right 2.140516e-03	k: 861	n:430000
Cons ci ratio: 3.190884e-03	ci left: 7.770158e-01	ci right 7.795014e-01	k: 334652	n:430000
KS ci ratio: 1.882881e-01	ci left: 9.121764e-04	ci right 1.103952e-03	k: 432	n:430000
RLIM   430000 perm   134 sec   (3214 perm/sec)   p_kst 1.004651e-03   p_cons 7.782605e-01   p_joint 2.002326e-03

Joint ci ratio: 1.318608e-01	ci left: 1.872342e-03	ci right 2.138829e-03	k: 881	n:440000
Cons ci ratio: 3.153494e-03	ci left: 7.771311e-01	ci right 7.795879e-01	k: 342479	n:440000
KS ci ratio: 1.865729e-01	ci left: 9.087737e-04	ci right 1.097896e-03	k: 440	n:440000
RLIM   440000 perm   138 sec   (3180 perm/sec)   p_kst 1.000000e-03   p_cons 7.783614e-01   p_joint 2.002273e-03

Joint ci ratio: 1.308274e-01	ci left: 1.860823e-03	ci right 2.123433e-03	k: 895	n:450000
Cons ci ratio: 3.117547e-03	ci left: 7.772237e-01	ci right 7.796527e-01	k: 350298	n:450000
KS ci ratio: 1.846979e-01	ci left: 9.076493e-04	ci right 1.094427e-03	k: 449	n:450000
RLIM   450000 perm   143 sec   (3139 perm/sec)   p_kst 9.977778e-04   p_cons 7.784400e-01   p_joint 1.988889e-03

Joint ci ratio: 1.293913e-01	ci left: 1.862433e-03	ci right 2.122164e-03	k: 915	n:460000
Cons ci ratio: 3.084201e-03	ci left: 7.771556e-01	ci right 7.795583e-01	k: 358045	n:460000
KS ci ratio: 1.826793e-01	ci left: 9.086574e-04	ci right 1.093373e-03	k: 459	n:460000
RLIM   460000 perm   148 sec   (3103 perm/sec)   p_kst 9.978261e-04   p_cons 7.783587e-01   p_joint 1.989130e-03

Joint ci ratio: 1.332383e-01	ci left: 1.715794e-03	ci right 1.962753e-03	k: 863	n:470000
Cons ci ratio: 3.049475e-03	ci left: 7.773655e-01	ci right 7.797417e-01	k: 365921	n:470000
KS ci ratio: 1.805333e-01	ci left: 9.116647e-04	ci right 1.094576e-03	k: 470	n:470000
RLIM   470000 perm   153 sec   (3071 perm/sec)   p_kst 1.000000e-03   p_cons 7.785553e-01   p_joint 1.836170e-03

Joint ci ratio: 1.316477e-01	ci left: 1.722349e-03	ci right 1.967060e-03	k: 884	n:480000
Cons ci ratio: 3.017863e-03	ci left: 7.773413e-01	ci right 7.796928e-01	k: 373689	n:480000
KS ci ratio: 1.779079e-01	ci left: 9.205304e-04	ci right 1.102246e-03	k: 484	n:480000
RLIM   480000 perm   158 sec   (3040 perm/sec)   p_kst 1.008333e-03   p_cons 7.785188e-01   p_joint 1.841667e-03

Joint ci ratio: 1.302568e-01	ci left: 1.724704e-03	ci right 1.966961e-03	k: 903	n:490000
Cons ci ratio: 2.986824e-03	ci left: 7.773633e-01	ci right 7.796906e-01	k: 381479	n:490000
KS ci ratio: 1.759239e-01	ci left: 9.231990e-04	ci right 1.103193e-03	k: 495	n:490000
RLIM   490000 perm   163 sec   (3010 perm/sec)   p_kst 1.010204e-03   p_cons 7.785286e-01   p_joint 1.842857e-03

Joint ci ratio: 1.288392e-01	ci left: 1.728914e-03	ci right 1.968917e-03	k: 923	n:500000
Cons ci ratio: 2.956742e-03	ci left: 7.773824e-01	ci right 7.796863e-01	k: 389268	n:500000
KS ci ratio: 1.738333e-01	ci left: 9.276848e-04	ci right 1.106178e-03	k: 507	n:500000
RLIM   500000 perm   168 sec   (2980 perm/sec)   p_kst 1.014000e-03   p_cons 7.785360e-01   p_joint 1.846000e-03

Joint ci ratio: 1.278747e-01	ci left: 1.721583e-03	ci right 1.958643e-03	k: 937	n:510000
Cons ci ratio: 2.927350e-03	ci left: 7.774246e-01	ci right 7.797056e-01	k: 397069	n:510000
KS ci ratio: 1.721473e-01	ci left: 9.282538e-04	ci right 1.104945e-03	k: 517	n:510000
RLIM   510000 perm   173 sec   (2949 perm/sec)   p_kst 1.013725e-03   p_cons 7.785667e-01   p_joint 1.837255e-03

Joint ci ratio: 1.265988e-01	ci left: 1.723851e-03	ci right 1.958678e-03	k: 956	n:520000
Cons ci ratio: 2.898834e-03	ci left: 7.774632e-01	ci right 7.797221e-01	k: 404869	n:520000
KS ci ratio: 1.708335e-01	ci left: 9.251269e-04	ci right 1.099740e-03	k: 525	n:520000
RLIM   520000 perm   178 sec   (2916 perm/sec)   p_kst 1.009615e-03   p_cons 7.785942e-01   p_joint 1.838462e-03

Joint ci ratio: 1.256186e-01	ci left: 1.718734e-03	ci right 1.950916e-03	k: 971	n:530000
Cons ci ratio: 2.870837e-03	ci left: 7.775365e-01	ci right 7.797737e-01	k: 412688	n:530000
KS ci ratio: 1.693907e-01	ci left: 9.239298e-04	ci right 1.096694e-03	k: 534	n:530000
RLIM   530000 perm   184 sec   (2888 perm/sec)   p_kst 1.007547e-03   p_cons 7.786566e-01   p_joint 1.832075e-03

Joint ci ratio: 1.245976e-01	ci left: 1.715608e-03	ci right 1.945345e-03	k: 987	n:540000
Cons ci ratio: 2.844277e-03	ci left: 7.775292e-01	ci right 7.797456e-01	k: 420465	n:540000
KS ci ratio: 1.679838e-01	ci left: 9.227829e-04	ci right 1.093754e-03	k: 543	n:540000
RLIM   540000 perm   189 sec   (2860 perm/sec)   p_kst 1.005556e-03   p_cons 7.786389e-01   p_joint 1.827778e-03

Joint ci ratio: 1.179131e-01	ci left: 1.887178e-03	ci right 2.125389e-03	k: 1102	n:550000
Cons ci ratio: 2.818976e-03	ci left: 7.774566e-01	ci right 7.796531e-01	k: 428206	n:550000
KS ci ratio: 1.663106e-01	ci left: 9.251685e-04	ci right 1.094704e-03	k: 554	n:550000
RLIM   550000 perm   194 sec   (2830 perm/sec)   p_kst 1.007273e-03   p_cons 7.785564e-01   p_joint 2.003636e-03

Joint ci ratio: 1.171725e-01	ci left: 1.877743e-03	ci right 2.113171e-03	k: 1116	n:560000
Cons ci ratio: 2.794960e-03	ci left: 7.773099e-01	ci right 7.794872e-01	k: 435904	n:560000
KS ci ratio: 1.651251e-01	ci left: 9.223408e-04	ci right 1.090033e-03	k: 562	n:560000
RLIM   560000 perm   200 sec   (2804 perm/sec)   p_kst 1.003571e-03   p_cons 7.784000e-01   p_joint 1.992857e-03

Joint ci ratio: 1.217365e-01	ci left: 1.705228e-03	ci right 1.927954e-03	k: 1034	n:570000
Cons ci ratio: 2.770968e-03	ci left: 7.772404e-01	ci right 7.793988e-01	k: 443643	n:570000
KS ci ratio: 1.641085e-01	ci left: 9.179340e-04	ci right 1.083696e-03	k: 569	n:570000
RLIM   570000 perm   205 sec   (2778 perm/sec)   p_kst 9.982456e-04   p_cons 7.783211e-01   p_joint 1.814035e-03

Joint ci ratio: 1.154797e-01	ci left: 1.868234e-03	ci right 2.098855e-03	k: 1149	n:580000
Cons ci ratio: 2.747199e-03	ci left: 7.772218e-01	ci right 7.793616e-01	k: 451410	n:580000
KS ci ratio: 1.626876e-01	ci left: 9.186439e-04	ci right 1.082958e-03	k: 579	n:580000
RLIM   580000 perm   211 sec   (2753 perm/sec)   p_kst 9.982759e-04   p_cons 7.782931e-01   p_joint 1.981034e-03

Joint ci ratio: 1.143417e-01	ci left: 1.874432e-03	ci right 2.103384e-03	k: 1172	n:590000
Cons ci ratio: 2.724005e-03	ci left: 7.772073e-01	ci right 7.793290e-01	k: 459179	n:590000
KS ci ratio: 1.614400e-01	ci left: 9.177092e-04	ci right 1.080475e-03	k: 588	n:590000
RLIM   590000 perm   216 sec   (2727 perm/sec)   p_kst 9.966102e-04   p_cons 7.782695e-01   p_joint 1.986441e-03

Joint ci ratio: 1.182456e-01	ci left: 1.720200e-03	ci right 1.937988e-03	k: 1096	n:600000
Cons ci ratio: 2.700984e-03	ci left: 7.772451e-01	ci right 7.793489e-01	k: 466979	n:600000
KS ci ratio: 1.595544e-01	ci left: 9.248105e-04	ci right 1.086736e-03	k: 602	n:600000
RLIM   600000 perm   222 sec   (2701 perm/sec)   p_kst 1.003333e-03   p_cons 7.782983e-01   p_joint 1.826667e-03

Joint ci ratio: 1.170771e-01	ci left: 1.727005e-03	ci right 1.943344e-03	k: 1118	n:610000
Cons ci ratio: 2.679007e-03	ci left: 7.772210e-01	ci right 7.793075e-01	k: 474742	n:610000
KS ci ratio: 1.582476e-01	ci left: 9.253913e-04	ci right 1.085966e-03	k: 612	n:610000
RLIM   610000 perm   228 sec   (2674 perm/sec)   p_kst 1.003279e-03   p_cons 7.782656e-01   p_joint 1.832787e-03

Joint ci ratio: 1.163005e-01	ci left: 1.722637e-03	ci right 1.936900e-03	k: 1133	n:620000
Cons ci ratio: 2.656888e-03	ci left: 7.772849e-01	ci right 7.793544e-01	k: 482559	n:620000
KS ci ratio: 1.572253e-01	ci left: 9.228595e-04	ci right 1.081862e-03	k: 620	n:620000
RLIM   620000 perm   234 sec   (2651 perm/sec)   p_kst 1.000000e-03   p_cons 7.783210e-01   p_joint 1.827419e-03

Joint ci ratio: 1.155896e-01	ci left: 1.716871e-03	ci right 1.929022e-03	k: 1147	n:630000
Cons ci ratio: 2.635671e-03	ci left: 7.772992e-01	ci right 7.793522e-01	k: 490346	n:630000
KS ci ratio: 1.559744e-01	ci left: 9.234619e-04	ci right 1.081185e-03	k: 630	n:630000
RLIM   630000 perm   240 sec   (2626 perm/sec)   p_kst 1.000000e-03   p_cons 7.783270e-01   p_joint 1.820635e-03

Joint ci ratio: 1.149907e-01	ci left: 1.708254e-03	ci right 1.918172e-03	k: 1159	n:640000
Cons ci ratio: 2.614185e-03	ci left: 7.774149e-01	ci right 7.794514e-01	k: 498198	n:640000
KS ci ratio: 1.551168e-01	ci left: 9.195445e-04	ci right 1.075654e-03	k: 637	n:640000
RLIM   640000 perm   246 sec   (2600 perm/sec)   p_kst 9.953125e-04   p_cons 7.784344e-01   p_joint 1.810938e-03

Joint ci ratio: 1.136267e-01	ci left: 1.723819e-03	ci right 1.932969e-03	k: 1187	n:650000
Cons ci ratio: 2.594314e-03	ci left: 7.773806e-01	ci right 7.794015e-01	k: 505955	n:650000
KS ci ratio: 1.534419e-01	ci left: 9.261048e-04	ci right 1.081475e-03	k: 651	n:650000
RLIM   650000 perm   252 sec   (2578 perm/sec)   p_kst 1.001538e-03   p_cons 7.783923e-01   p_joint 1.826154e-03

Joint ci ratio: 1.124027e-01	ci left: 1.735981e-03	ci right 1.944188e-03	k: 1213	n:660000
Cons ci ratio: 2.574754e-03	ci left: 7.773657e-01	ci right 7.793713e-01	k: 513724	n:660000
KS ci ratio: 1.513658e-01	ci left: 9.383061e-04	ci right 1.093400e-03	k: 669	n:660000
RLIM   660000 perm   258 sec   (2555 perm/sec)   p_kst 1.013636e-03   p_cons 7.783697e-01   p_joint 1.837879e-03

Joint ci ratio: 1.117149e-01	ci left: 1.731832e-03	ci right 1.938186e-03	k: 1228	n:670000
Cons ci ratio: 2.555575e-03	ci left: 7.773587e-01	ci right 7.793493e-01	k: 521498	n:670000
KS ci ratio: 1.504704e-01	ci left: 9.357909e-04	ci right 1.089472e-03	k: 677	n:670000
RLIM   670000 perm   264 sec   (2533 perm/sec)   p_kst 1.010448e-03   p_cons 7.783552e-01   p_joint 1.832836e-03

Joint ci ratio: 1.111740e-01	ci left: 1.723518e-03	ci right 1.927822e-03	k: 1240	n:680000
Cons ci ratio: 2.537196e-03	ci left: 7.773005e-01	ci right 7.792766e-01	k: 529237	n:680000
KS ci ratio: 1.499192e-01	ci left: 9.291056e-04	ci right 1.081079e-03	k: 682	n:680000
RLIM   680000 perm   271 sec   (2510 perm/sec)   p_kst 1.002941e-03   p_cons 7.782897e-01   p_joint 1.823529e-03

Joint ci ratio: 1.102012e-01	ci left: 1.729541e-03	ci right 1.932649e-03	k: 1262	n:690000
Cons ci ratio: 2.518837e-03	ci left: 7.772948e-01	ci right 7.792565e-01	k: 537011	n:690000
KS ci ratio: 1.484055e-01	ci left: 9.351731e-04	ci right 1.086458e-03	k: 696	n:690000
RLIM   690000 perm   277 sec   (2490 perm/sec)   p_kst 1.008696e-03   p_cons 7.782768e-01   p_joint 1.828986e-03

Joint ci ratio: 1.096388e-01	ci left: 1.722894e-03	ci right 1.924122e-03	k: 1275	n:700000
Cons ci ratio: 2.500768e-03	ci left: 7.773036e-01	ci right 7.792513e-01	k: 544795	n:700000
KS ci ratio: 1.475613e-01	ci left: 9.328188e-04	ci right 1.082789e-03	k: 704	n:700000
RLIM   700000 perm   284 sec   (2469 perm/sec)   p_kst 1.005714e-03   p_cons 7.782786e-01   p_joint 1.821429e-03

Joint ci ratio: 1.089580e-01	ci left: 1.720547e-03	ci right 1.920173e-03	k: 1291	n:710000
Cons ci ratio: 2.483569e-03	ci left: 7.772445e-01	ci right 7.791786e-01	k: 552531	n:710000
KS ci ratio: 1.468344e-01	ci left: 9.291764e-04	ci right 1.077760e-03	k: 711	n:710000
RLIM   710000 perm   290 sec   (2449 perm/sec)   p_kst 1.001408e-03   p_cons 7.782127e-01   p_joint 1.818310e-03

Joint ci ratio: 1.083727e-01	ci left: 1.715566e-03	ci right 1.913477e-03	k: 1305	n:720000
Cons ci ratio: 2.466600e-03	ci left: 7.772038e-01	ci right 7.791245e-01	k: 560279	n:720000
KS ci ratio: 1.460166e-01	ci left: 9.269752e-04	ci right 1.074309e-03	k: 719	n:720000
RLIM   720000 perm   296 sec   (2429 perm/sec)   p_kst 9.986111e-04   p_cons 7.781653e-01   p_joint 1.812500e-03

Joint ci ratio: 1.078787e-01	ci left: 1.708059e-03	ci right 1.904148e-03	k: 1317	n:730000
Cons ci ratio: 2.449556e-03	ci left: 7.772232e-01	ci right 7.791307e-01	k: 568070	n:730000
KS ci ratio: 1.455127e-01	ci left: 9.208762e-04	ci right 1.066692e-03	k: 724	n:730000
RLIM   730000 perm   303 sec   (2409 perm/sec)   p_kst 9.917808e-04   p_cons 7.781781e-01   p_joint 1.804110e-03

Joint ci ratio: 1.072702e-01	ci left: 1.704702e-03	ci right 1.899232e-03	k: 1332	n:740000
Cons ci ratio: 2.433052e-03	ci left: 7.772151e-01	ci right 7.791097e-01	k: 575841	n:740000
KS ci ratio: 1.448156e-01	ci left: 9.175477e-04	ci right 1.062080e-03	k: 731	n:740000
RLIM   740000 perm   310 sec   (2390 perm/sec)   p_kst 9.878378e-04   p_cons 7.781635e-01   p_joint 1.800000e-03

Joint ci ratio: 1.063170e-01	ci left: 1.713118e-03	ci right 1.906762e-03	k: 1356	n:750000
Cons ci ratio: 2.416624e-03	ci left: 7.772433e-01	ci right 7.791252e-01	k: 583639	n:750000
KS ci ratio: 1.432578e-01	ci left: 9.258785e-04	ci right 1.070020e-03	k: 747	n:750000
RLIM   750000 perm   316 sec   (2370 perm/sec)   p_kst 9.960000e-04   p_cons 7.781853e-01   p_joint 1.808000e-03

Joint ci ratio: 1.053887e-01	ci left: 1.721320e-03	ci right 1.914088e-03	k: 1380	n:760000
Cons ci ratio: 2.400790e-03	ci left: 7.772326e-01	ci right 7.791021e-01	k: 591408	n:760000
KS ci ratio: 1.419353e-01	ci left: 9.314599e-04	ci right 1.075019e-03	k: 761	n:760000
RLIM   760000 perm   323 sec   (2351 perm/sec)   p_kst 1.001316e-03   p_cons 7.781684e-01   p_joint 1.815789e-03

Joint ci ratio: 1.045216e-01	ci left: 1.728052e-03	ci right 1.919883e-03	k: 1403	n:770000
Cons ci ratio: 2.384725e-03	ci left: 7.773003e-01	ci right 7.791574e-01	k: 599237	n:770000
KS ci ratio: 1.406488e-01	ci left: 9.369023e-04	ci right 1.079881e-03	k: 775	n:770000
RLIM   770000 perm   330 sec   (2330 perm/sec)   p_kst 1.006494e-03   p_cons 7.782299e-01   p_joint 1.822078e-03

Joint ci ratio: 1.040046e-01	ci left: 1.723378e-03	ci right 1.913686e-03	k: 1417	n:780000
Cons ci ratio: 2.369585e-03	ci left: 7.772776e-01	ci right 7.791229e-01	k: 606997	n:780000
KS ci ratio: 1.396623e-01	ci left: 9.384989e-04	ci right 1.080633e-03	k: 786	n:780000
RLIM   780000 perm   337 sec   (2312 perm/sec)   p_kst 1.007692e-03   p_cons 7.782013e-01   p_joint 1.816667e-03

Joint ci ratio: 1.034952e-01	ci left: 1.718824e-03	ci right 1.907644e-03	k: 1431	n:790000
Cons ci ratio: 2.354713e-03	ci left: 7.772581e-01	ci right 7.790917e-01	k: 614759	n:790000
KS ci ratio: 1.391333e-01	ci left: 9.339491e-04	ci right 1.074814e-03	k: 792	n:790000
RLIM   790000 perm   345 sec   (2293 perm/sec)   p_kst 1.002532e-03   p_cons 7.781759e-01   p_joint 1.811392e-03

Joint ci ratio: 1.026030e-01	ci left: 1.727784e-03	ci right 1.915853e-03	k: 1456	n:800000
Cons ci ratio: 2.339194e-03	ci left: 7.773756e-01	ci right 7.791974e-01	k: 622630	n:800000
KS ci ratio: 1.378354e-01	ci left: 9.403753e-04	ci right 1.080778e-03	k: 807	n:800000
RLIM   800000 perm   352 sec   (2276 perm/sec)   p_kst 1.008750e-03   p_cons 7.782875e-01   p_joint 1.820000e-03

Joint ci ratio: 1.021487e-01	ci left: 1.722091e-03	ci right 1.908661e-03	k: 1469	n:810000
Cons ci ratio: 2.324625e-03	ci left: 7.773938e-01	ci right 7.792042e-01	k: 630423	n:810000
KS ci ratio: 1.372424e-01	ci left: 9.371102e-04	ci right 1.076374e-03	k: 814	n:810000
RLIM   810000 perm   359 sec   (2257 perm/sec)   p_kst 1.004938e-03   p_cons 7.783000e-01   p_joint 1.813580e-03

Joint ci ratio: 1.015290e-01	ci left: 1.722482e-03	ci right 1.907894e-03	k: 1487	n:820000
Cons ci ratio: 2.310505e-03	ci left: 7.773847e-01	ci right 7.791841e-01	k: 638194	n:820000
KS ci ratio: 1.361605e-01	ci left: 9.409936e-04	ci right 1.079643e-03	k: 827	n:820000
RLIM   820000 perm   366 sec   (2239 perm/sec)   p_kst 1.008537e-03   p_cons 7.782854e-01   p_joint 1.813415e-03

Joint ci ratio: 9.632000e-02	ci left: 1.895618e-03	ci right 2.088607e-03	k: 1652	n:830000
Cons ci ratio: 2.296904e-03	ci left: 7.773360e-01	ci right 7.791247e-01	k: 645932	n:830000
KS ci ratio: 1.353457e-01	ci left: 9.412954e-04	ci right 1.079093e-03	k: 837	n:830000
RLIM   830000 perm   373 sec   (2223 perm/sec)   p_kst 1.008434e-03   p_cons 7.782313e-01   p_joint 1.990361e-03

Joint ci ratio: 9.999452e-02	ci left: 1.734853e-03	ci right 1.918609e-03	k: 1533	n:840000
Cons ci ratio: 2.283241e-03	ci left: 7.773338e-01	ci right 7.791119e-01	k: 653708	n:840000
KS ci ratio: 1.339928e-01	ci left: 9.496460e-04	ci right 1.087166e-03	k: 854	n:840000
RLIM   840000 perm   381 sec   (2206 perm/sec)   p_kst 1.016667e-03   p_cons 7.782238e-01   p_joint 1.825000e-03

Joint ci ratio: 9.703060e-02	ci left: 1.823459e-03	ci right 2.010550e-03	k: 1628	n:850000
Cons ci ratio: 2.269470e-03	ci left: 7.773848e-01	ci right 7.791522e-01	k: 661529	n:850000
KS ci ratio: 1.330622e-01	ci left: 9.521198e-04	ci right 1.088964e-03	k: 866	n:850000
RLIM   850000 perm   388 sec   (2191 perm/sec)   p_kst 1.018824e-03   p_cons 7.782694e-01   p_joint 1.915294e-03

Joint ci ratio: 9.409664e-02	ci left: 1.919166e-03	ci right 2.109794e-03	k: 1731	n:860000
Cons ci ratio: 2.256402e-03	ci left: 7.773647e-01	ci right 7.791218e-01	k: 669290	n:860000
KS ci ratio: 1.323014e-01	ci left: 9.522906e-04	ci right 1.088316e-03	k: 876	n:860000
RLIM   860000 perm   396 sec   (2174 perm/sec)   p_kst 1.018605e-03   p_cons 7.782442e-01   p_joint 2.012791e-03

Joint ci ratio: 9.345119e-02	ci left: 1.924046e-03	ci right 2.113777e-03	k: 1755	n:870000
Cons ci ratio: 2.242847e-03	ci left: 7.774544e-01	ci right 7.792012e-01	k: 677146	n:870000
KS ci ratio: 1.316278e-01	ci left: 9.513480e-04	ci right 1.086492e-03	k: 885	n:870000
RLIM   870000 perm   403 sec   (2159 perm/sec)   p_kst 1.017241e-03   p_cons 7.783287e-01   p_joint 2.017241e-03

Joint ci ratio: 9.700395e-02	ci left: 1.762402e-03	ci right 1.943175e-03	k: 1629	n:880000
Cons ci ratio: 2.230561e-03	ci left: 7.773828e-01	ci right 7.791199e-01	k: 684862	n:880000
KS ci ratio: 1.304547e-01	ci left: 9.581233e-04	ci right 1.092923e-03	k: 901	n:880000
RLIM   880000 perm   411 sec   (2143 perm/sec)   p_kst 1.023864e-03   p_cons 7.782523e-01   p_joint 1.851136e-03

Joint ci ratio: 9.659028e-02	ci left: 1.757949e-03	ci right 1.937453e-03	k: 1643	n:890000
Cons ci ratio: 2.218374e-03	ci left: 7.773286e-01	ci right 7.790561e-01	k: 692592	n:890000
KS ci ratio: 1.299517e-01	ci left: 9.549667e-04	ci right 1.088764e-03	k: 908	n:890000
RLIM   890000 perm   419 sec   (2126 perm/sec)   p_kst 1.020225e-03   p_cons 7.781933e-01   p_joint 1.846067e-03

Joint ci ratio: 9.609480e-02	ci left: 1.756850e-03	ci right 1.935270e-03	k: 1660	n:900000
Cons ci ratio: 2.205830e-03	ci left: 7.773625e-01	ci right 7.790802e-01	k: 700400	n:900000
KS ci ratio: 1.293132e-01	ci left: 9.540317e-04	ci right 1.086991e-03	k: 917	n:900000
RLIM   900000 perm   426 sec   (2110 perm/sec)   p_kst 1.018889e-03   p_cons 7.782222e-01   p_joint 1.844444e-03

Joint ci ratio: 9.566400e-02	ci left: 1.753632e-03	ci right 1.930882e-03	k: 1675	n:910000
Cons ci ratio: 2.193587e-03	ci left: 7.773813e-01	ci right 7.790895e-01	k: 708195	n:910000
KS ci ratio: 1.287536e-01	ci left: 9.520552e-04	ci right 1.084121e-03	k: 925	n:910000
RLIM   910000 perm   434 sec   (2096 perm/sec)   p_kst 1.016484e-03   p_cons 7.782363e-01   p_joint 1.840659e-03

Joint ci ratio: 9.504206e-02	ci left: 1.757914e-03	ci right 1.934377e-03	k: 1697	n:920000
Cons ci ratio: 2.181931e-03	ci left: 7.773388e-01	ci right 7.790378e-01	k: 715934	n:920000
KS ci ratio: 1.279955e-01	ci left: 9.532793e-04	ci right 1.084677e-03	k: 936	n:920000
RLIM   920000 perm   442 sec   (2080 perm/sec)   p_kst 1.017391e-03   p_cons 7.781891e-01   p_joint 1.844565e-03

Joint ci ratio: 9.454230e-02	ci left: 1.757907e-03	ci right 1.933391e-03	k: 1715	n:930000
Cons ci ratio: 2.170141e-03	ci left: 7.773478e-01	ci right 7.790376e-01	k: 723720	n:930000
KS ci ratio: 1.273853e-01	ci left: 9.523973e-04	ci right 1.083001e-03	k: 945	n:930000
RLIM   930000 perm   450 sec   (2065 perm/sec)   p_kst 1.016129e-03   p_cons 7.781935e-01   p_joint 1.844086e-03

Joint ci ratio: 8.988740e-02	ci left: 1.928368e-03	ci right 2.110892e-03	k: 1897	n:940000
Cons ci ratio: 2.159251e-03	ci left: 7.772426e-01	ci right 7.789237e-01	k: 731399	n:940000
KS ci ratio: 1.269168e-01	ci left: 9.494753e-04	ci right 1.079163e-03	k: 952	n:940000
RLIM   940000 perm   459 sec   (2050 perm/sec)   p_kst 1.012766e-03   p_cons 7.780840e-01   p_joint 2.018085e-03

Joint ci ratio: 9.364634e-02	ci left: 1.754818e-03	ci right 1.928242e-03	k: 1748	n:950000
Cons ci ratio: 2.147620e-03	ci left: 7.772852e-01	ci right 7.789573e-01	k: 739216	n:950000
KS ci ratio: 1.266517e-01	ci left: 9.435576e-04	ci right 1.072148e-03	k: 956	n:950000
RLIM   950000 perm   467 sec   (2036 perm/sec)   p_kst 1.006316e-03   p_cons 7.781221e-01   p_joint 1.840000e-03

Joint ci ratio: 8.907016e-02	ci left: 1.923836e-03	ci right 2.104190e-03	k: 1932	n:960000
Cons ci ratio: 2.136316e-03	ci left: 7.773039e-01	ci right 7.789673e-01	k: 747011	n:960000
KS ci ratio: 1.259300e-01	ci left: 9.448252e-04	ci right 1.072800e-03	k: 967	n:960000
RLIM   960000 perm   475 sec   (2022 perm/sec)   p_kst 1.007292e-03   p_cons 7.781365e-01   p_joint 2.012500e-03

Joint ci ratio: 8.856750e-02	ci left: 1.926180e-03	ci right 2.105681e-03	k: 1954	n:970000
Cons ci ratio: 2.125164e-03	ci left: 7.773265e-01	ci right 7.789812e-01	k: 754810	n:970000
KS ci ratio: 1.250288e-01	ci left: 9.490649e-04	ci right 1.076625e-03	k: 981	n:970000
RLIM   970000 perm   483 sec   (2009 perm/sec)   p_kst 1.011340e-03   p_cons 7.781546e-01   p_joint 2.014433e-03

Joint ci ratio: 8.802864e-02	ci left: 1.930474e-03	ci right 2.109225e-03	k: 1978	n:980000
Cons ci ratio: 2.114360e-03	ci left: 7.773199e-01	ci right 7.789662e-01	k: 762581	n:980000
KS ci ratio: 1.242092e-01	ci left: 9.522324e-04	ci right 1.079318e-03	k: 994	n:980000
RLIM   980000 perm   491 sec   (1996 perm/sec)   p_kst 1.014286e-03   p_cons 7.781439e-01   p_joint 2.018367e-03

Joint ci ratio: 8.780753e-02	ci left: 1.920853e-03	ci right 2.098243e-03	k: 1988	n:990000
Cons ci ratio: 2.104284e-03	ci left: 7.772205e-01	ci right 7.788587e-01	k: 770260	n:990000
KS ci ratio: 1.237748e-01	ci left: 9.494652e-04	ci right 1.075706e-03	k: 1001	n:990000
RLIM   990000 perm   499 sec   (1982 perm/sec)   p_kst 1.011111e-03   p_cons 7.780404e-01   p_joint 2.008081e-03

Joint ci ratio: 7.471672e-02	ci left: 2.642414e-03	ci right 2.848483e-03	k: 2744	n:1000000
Cons ci ratio: 2.093605e-03	ci left: 7.772462e-01	ci right 7.788762e-01	k: 778062	n:1000000
KS ci ratio: 1.231008e-01	ci left: 9.506309e-04	ci right 1.076288e-03	k: 1012	n:1000000
RLIM   1000000 perm   508 sec   (1969 perm/sec)   p_kst 1.012000e-03   p_cons 7.780620e-01   p_joint 2.744000e-03

Joint ci ratio: 7.424461e-02	ci left: 2.650260e-03	ci right 2.855578e-03	k: 2779	n:1010000
Cons ci ratio: 2.083171e-03	ci left: 7.772576e-01	ci right 7.788794e-01	k: 785850	n:1010000
KS ci ratio: 1.223183e-01	ci left: 9.536950e-04	ci right 1.078898e-03	k: 1025	n:1010000
RLIM   1010000 perm   516 sec   (1956 perm/sec)   p_kst 1.014851e-03   p_cons 7.780693e-01   p_joint 2.751485e-03

Joint ci ratio: 8.630161e-02	ci left: 1.931491e-03	ci right 2.106650e-03	k: 2058	n:1020000
Cons ci ratio: 2.073209e-03	ci left: 7.772158e-01	ci right 7.788297e-01	k: 793584	n:1020000
KS ci ratio: 1.215505e-01	ci left: 9.567015e-04	ci right 1.081454e-03	k: 1038	n:1020000
RLIM   1020000 perm   525 sec   (1941 perm/sec)   p_kst 1.017647e-03   p_cons 7.780235e-01   p_joint 2.017647e-03

Joint ci ratio: 7.346895e-02	ci left: 2.655023e-03	ci right 2.858469e-03	k: 2838	n:1030000
Cons ci ratio: 2.063070e-03	ci left: 7.772282e-01	ci right 7.788343e-01	k: 801373	n:1030000
KS ci ratio: 1.210854e-01	ci left: 9.549444e-04	ci right 1.078957e-03	k: 1046	n:1030000
RLIM   1030000 perm   534 sec   (1929 perm/sec)   p_kst 1.015534e-03   p_cons 7.780320e-01   p_joint 2.755340e-03

Joint ci ratio: 7.325034e-02	ci left: 2.645540e-03	ci right 2.847630e-03	k: 2855	n:1040000
Cons ci ratio: 2.053615e-03	ci left: 7.771500e-01	ci right 7.787485e-01	k: 809068	n:1040000
KS ci ratio: 1.204542e-01	ci left: 9.560197e-04	ci right 1.079479e-03	k: 1057	n:1040000
RLIM   1040000 perm   543 sec   (1915 perm/sec)   p_kst 1.016346e-03   p_cons 7.779500e-01   p_joint 2.745192e-03

Joint ci ratio: 7.293191e-02	ci left: 2.643718e-03	ci right 2.844755e-03	k: 2880	n:1050000
Cons ci ratio: 2.043748e-03	ci left: 7.771647e-01	ci right 7.787556e-01	k: 816859	n:1050000
KS ci ratio: 1.194976e-01	ci left: 9.626195e-04	ci right 1.085874e-03	k: 1074	n:1050000
RLIM   1050000 perm   552 sec   (1902 perm/sec)   p_kst 1.022857e-03   p_cons 7.779610e-01   p_joint 2.742857e-03

Joint ci ratio: 7.264268e-02	ci left: 2.640081e-03	ci right 2.840011e-03	k: 2903	n:1060000
Cons ci ratio: 2.034016e-03	ci left: 7.771802e-01	ci right 7.787635e-01	k: 824651	n:1060000
KS ci ratio: 1.191106e-01	ci left: 9.599448e-04	ci right 1.082431e-03	k: 1081	n:1060000
RLIM   1060000 perm   561 sec   (1890 perm/sec)   p_kst 1.019811e-03   p_cons 7.779726e-01   p_joint 2.738679e-03

Joint ci ratio: 7.228260e-02	ci left: 2.642019e-03	ci right 2.841062e-03	k: 2932	n:1070000
Cons ci ratio: 2.024684e-03	ci left: 7.771505e-01	ci right 7.787265e-01	k: 832395	n:1070000
KS ci ratio: 1.184555e-01	ci left: 9.618552e-04	ci right 1.083862e-03	k: 1093	n:1070000
RLIM   1070000 perm   570 sec   (1878 perm/sec)   p_kst 1.021495e-03   p_cons 7.779393e-01   p_joint 2.740187e-03

Joint ci ratio: 7.195220e-02	ci left: 2.642105e-03	ci right 2.840207e-03	k: 2959	n:1080000
Cons ci ratio: 2.015226e-03	ci left: 7.771649e-01	ci right 7.787336e-01	k: 840186	n:1080000
KS ci ratio: 1.180785e-01	ci left: 9.592388e-04	ci right 1.080500e-03	k: 1100	n:1080000
RLIM   1080000 perm   579 sec   (1866 perm/sec)   p_kst 1.018519e-03   p_cons 7.779500e-01   p_joint 2.739815e-03

Joint ci ratio: 7.157823e-02	ci left: 2.645795e-03	ci right 2.843100e-03	k: 2990	n:1090000
Cons ci ratio: 2.006171e-03	ci left: 7.771323e-01	ci right 7.786938e-01	k: 847926	n:1090000
KS ci ratio: 1.174930e-01	ci left: 9.602329e-04	ci right 1.080976e-03	k: 1111	n:1090000
RLIM   1090000 perm   588 sec   (1855 perm/sec)   p_kst 1.019266e-03   p_cons 7.779138e-01   p_joint 2.743119e-03

Joint ci ratio: 7.124551e-02	ci left: 2.646743e-03	ci right 2.843163e-03	k: 3018	n:1100000
Cons ci ratio: 1.996601e-03	ci left: 7.772103e-01	ci right 7.787646e-01	k: 855787	n:1100000
KS ci ratio: 1.169682e-01	ci left: 9.603278e-04	ci right 1.080506e-03	k: 1121	n:1100000
RLIM   1100000 perm   597 sec   (1843 perm/sec)   p_kst 1.019091e-03   p_cons 7.779882e-01   p_joint 2.743636e-03

Joint ci ratio: 7.095242e-02	ci left: 2.645020e-03	ci right 2.840472e-03	k: 3043	n:1110000
Cons ci ratio: 1.987659e-03	ci left: 7.772013e-01	ci right 7.787486e-01	k: 863553	n:1110000
KS ci ratio: 1.163476e-01	ci left: 9.621716e-04	ci right 1.081898e-03	k: 1133	n:1110000
RLIM   1110000 perm   606 sec   (1831 perm/sec)   p_kst 1.020721e-03   p_cons 7.779757e-01   p_joint 2.741441e-03

Joint ci ratio: 7.060527e-02	ci left: 2.647716e-03	ci right 2.842370e-03	k: 3073	n:1120000
Cons ci ratio: 1.978754e-03	ci left: 7.772068e-01	ci right 7.787471e-01	k: 871335	n:1120000
KS ci ratio: 1.159395e-01	ci left: 9.605161e-04	ci right 1.079589e-03	k: 1141	n:1120000
RLIM   1120000 perm   616 sec   (1819 perm/sec)   p_kst 1.018750e-03   p_cons 7.779777e-01   p_joint 2.743750e-03

Joint ci ratio: 7.021781e-02	ci left: 2.653844e-03	ci right 2.847834e-03	k: 3107	n:1130000
Cons ci ratio: 1.969403e-03	ci left: 7.773114e-01	ci right 7.788447e-01	k: 879229	n:1130000
KS ci ratio: 1.154352e-01	ci left: 9.606094e-04	ci right 1.079140e-03	k: 1151	n:1130000
RLIM   1130000 perm   625 sec   (1807 perm/sec)   p_kst 1.018584e-03   p_cons 7.780788e-01   p_joint 2.749558e-03

Joint ci ratio: 6.983666e-02	ci left: 2.659867e-03	ci right 2.853199e-03	k: 3141	n:1140000
Cons ci ratio: 1.960964e-03	ci left: 7.772764e-01	ci right 7.788029e-01	k: 886966	n:1140000
KS ci ratio: 1.147399e-01	ci left: 9.641103e-04	ci right 1.082308e-03	k: 1165	n:1140000
RLIM   1140000 perm   635 sec   (1794 perm/sec)   p_kst 1.021930e-03   p_cons 7.780404e-01   p_joint 2.755263e-03

Joint ci ratio: 6.947262e-02	ci left: 2.664934e-03	ci right 2.857584e-03	k: 3174	n:1150000
Cons ci ratio: 1.952574e-03	ci left: 7.772524e-01	ci right 7.787723e-01	k: 894715	n:1150000
KS ci ratio: 1.142024e-01	ci left: 9.650181e-04	ci right 1.082736e-03	k: 1176	n:1150000
RLIM   1150000 perm   645 sec   (1783 perm/sec)   p_kst 1.022609e-03   p_cons 7.780130e-01   p_joint 2.760000e-03

Joint ci ratio: 6.917911e-02	ci left: 2.664833e-03	ci right 2.856629e-03	k: 3201	n:1160000
Cons ci ratio: 1.944494e-03	ci left: 7.771925e-01	ci right 7.787061e-01	k: 902422	n:1160000
KS ci ratio: 1.139126e-01	ci left: 9.617238e-04	ci right 1.078722e-03	k: 1182	n:1160000
RLIM   1160000 perm   654 sec   (1773 perm/sec)   p_kst 1.018966e-03   p_cons 7.779500e-01   p_joint 2.759483e-03

Joint ci ratio: 6.896429e-02	ci left: 2.658855e-03	ci right 2.849603e-03	k: 3221	n:1170000
Cons ci ratio: 1.936198e-03	ci left: 7.771902e-01	ci right 7.786973e-01	k: 910195	n:1170000
KS ci ratio: 1.136251e-01	ci left: 9.584861e-04	ci right 1.074776e-03	k: 1188	n:1170000
RLIM   1170000 perm   664 sec   (1762 perm/sec)   p_kst 1.015385e-03   p_cons 7.779444e-01   p_joint 2.752991e-03

Joint ci ratio: 6.861366e-02	ci left: 2.663807e-03	ci right 2.853901e-03	k: 3254	n:1180000
Cons ci ratio: 1.928148e-03	ci left: 7.771625e-01	ci right 7.786633e-01	k: 917938	n:1180000
KS ci ratio: 1.130088e-01	ci left: 9.610681e-04	ci right 1.076997e-03	k: 1201	n:1180000
RLIM   1180000 perm   674 sec   (1752 perm/sec)   p_kst 1.017797e-03   p_cons 7.779136e-01   p_joint 2.757627e-03

Joint ci ratio: 6.828914e-02	ci left: 2.667027e-03	ci right 2.856414e-03	k: 3285	n:1190000
Cons ci ratio: 1.920357e-03	ci left: 7.771067e-01	ci right 7.786012e-01	k: 925647	n:1190000
KS ci ratio: 1.124952e-01	ci left: 9.619749e-04	ci right 1.077451e-03	k: 1212	n:1190000
RLIM   1190000 perm   683 sec   (1742 perm/sec)   p_kst 1.018487e-03   p_cons 7.778546e-01   p_joint 2.760504e-03

Joint ci ratio: 6.803092e-02	ci left: 2.665280e-03	ci right 2.853799e-03	k: 3310	n:1200000
Cons ci ratio: 1.913010e-03	ci left: 7.769884e-01	ci right 7.784770e-01	k: 933280	n:1200000
KS ci ratio: 1.119885e-01	ci left: 9.628678e-04	ci right 1.077896e-03	k: 1223	n:1200000
RLIM   1200000 perm   693 sec   (1731 perm/sec)   p_kst 1.019167e-03   p_cons 7.777333e-01   p_joint 2.758333e-03

Joint ci ratio: 6.779598e-02	ci left: 2.661938e-03	ci right 2.849545e-03	k: 3333	n:1210000
Cons ci ratio: 1.905122e-03	ci left: 7.769854e-01	ci right 7.784678e-01	k: 941050	n:1210000
KS ci ratio: 1.115791e-01	ci left: 9.621403e-04	ci right 1.076633e-03	k: 1232	n:1210000
RLIM   1210000 perm   703 sec   (1721 perm/sec)   p_kst 1.018182e-03   p_cons 7.777273e-01   p_joint 2.754545e-03

Joint ci ratio: 6.750300e-02	ci left: 2.663488e-03	ci right 2.850361e-03	k: 3362	n:1220000
Cons ci ratio: 1.897479e-03	ci left: 7.769554e-01	ci right 7.784318e-01	k: 948787	n:1220000
KS ci ratio: 1.109508e-01	ci left: 9.654100e-04	ci right 1.079603e-03	k: 1246	n:1220000
RLIM   1220000 perm   713 sec   (1711 perm/sec)   p_kst 1.021311e-03   p_cons 7.776943e-01   p_joint 2.755738e-03

Joint ci ratio: 6.715425e-02	ci left: 2.669810e-03	ci right 2.856121e-03	k: 3397	n:1230000
Cons ci ratio: 1.890190e-03	ci left: 7.768779e-01	ci right 7.783485e-01	k: 956465	n:1230000
KS ci ratio: 1.102893e-01	ci left: 9.694190e-04	ci right 1.083358e-03	k: 1261	n:1230000
RLIM   1230000 perm   724 sec   (1700 perm/sec)   p_kst 1.025203e-03   p_cons 7.776138e-01   p_joint 2.761789e-03

Joint ci ratio: 6.687925e-02	ci left: 2.670481e-03	ci right 2.856047e-03	k: 3425	n:1240000
Cons ci ratio: 1.882698e-03	ci left: 7.768541e-01	ci right 7.783188e-01	k: 964208	n:1240000
KS ci ratio: 1.096824e-01	ci left: 9.725809e-04	ci right 1.086222e-03	k: 1275	n:1240000
RLIM   1240000 perm   734 sec   (1689 perm/sec)   p_kst 1.028226e-03   p_cons 7.775871e-01   p_joint 2.762097e-03

Joint ci ratio: 6.661728e-02	ci left: 2.670357e-03	ci right 2.855159e-03	k: 3452	n:1250000
Cons ci ratio: 1.875286e-03	ci left: 7.768323e-01	ci right 7.782912e-01	k: 971953	n:1250000
KS ci ratio: 1.092551e-01	ci left: 9.725812e-04	ci right 1.085751e-03	k: 1285	n:1250000
RLIM   1250000 perm   744 sec   (1679 perm/sec)   p_kst 1.028000e-03   p_cons 7.775624e-01   p_joint 2.761600e-03

Joint ci ratio: 6.635837e-02	ci left: 2.670236e-03	ci right 2.854284e-03	k: 3479	n:1260000
Cons ci ratio: 1.867910e-03	ci left: 7.768204e-01	ci right 7.782736e-01	k: 979710	n:1260000
KS ci ratio: 1.087070e-01	ci left: 9.748986e-04	ci right 1.087733e-03	k: 1298	n:1260000
RLIM   1260000 perm   755 sec   (1670 perm/sec)   p_kst 1.030159e-03   p_cons 7.775476e-01   p_joint 2.761111e-03

Joint ci ratio: 6.609300e-02	ci left: 2.670893e-03	ci right 2.854221e-03	k: 3507	n:1270000
Cons ci ratio: 1.860573e-03	ci left: 7.768174e-01	ci right 7.782648e-01	k: 987478	n:1270000
KS ci ratio: 1.082909e-01	ci left: 9.748826e-04	ci right 1.087255e-03	k: 1308	n:1270000
RLIM   1270000 perm   765 sec   (1661 perm/sec)   p_kst 1.029921e-03   p_cons 7.775417e-01   p_joint 2.761417e-03

Joint ci ratio: 6.587751e-02	ci left: 2.667698e-03	ci right 2.850188e-03	k: 3530	n:1280000
Cons ci ratio: 1.853075e-03	ci left: 7.768606e-01	ci right 7.783022e-01	k: 995305	n:1280000
KS ci ratio: 1.080027e-01	ci left: 9.725871e-04	ci right 1.084378e-03	k: 1315	n:1280000
RLIM   1280000 perm   775 sec   (1651 perm/sec)   p_kst 1.027344e-03   p_cons 7.775820e-01   p_joint 2.757812e-03

Joint ci ratio: 6.553481e-02	ci left: 2.675230e-03	ci right 2.857247e-03	k: 3567	n:1290000
Cons ci ratio: 1.846072e-03	ci left: 7.768270e-01	ci right 7.782632e-01	k: 1003034	n:1290000
KS ci ratio: 1.075947e-01	ci left: 9.725906e-04	ci right 1.083933e-03	k: 1325	n:1290000
RLIM   1290000 perm   786 sec   (1642 perm/sec)   p_kst 1.027132e-03   p_cons 7.775457e-01   p_joint 2.765116e-03

Joint ci ratio: 6.528826e-02	ci left: 2.675081e-03	ci right 2.856377e-03	k: 3594	n:1300000
Cons ci ratio: 1.839017e-03	ci left: 7.768187e-01	ci right 7.782493e-01	k: 1010795	n:1300000
KS ci ratio: 1.072314e-01	ci left: 9.718462e-04	ci right 1.082704e-03	k: 1334	n:1300000
RLIM   1300000 perm   796 sec   (1633 perm/sec)   p_kst 1.026154e-03   p_cons 7.775346e-01   p_joint 2.764615e-03

Joint ci ratio: 6.498155e-02	ci left: 2.680192e-03	ci right 2.860949e-03	k: 3628	n:1310000
Cons ci ratio: 1.831752e-03	ci left: 7.768655e-01	ci right 7.782905e-01	k: 1018628	n:1310000
KS ci ratio: 1.067130e-01	ci left: 9.740857e-04	ci right 1.084628e-03	k: 1347	n:1310000
RLIM   1310000 perm   807 sec   (1624 perm/sec)   p_kst 1.028244e-03   p_cons 7.775786e-01   p_joint 2.769466e-03

Joint ci ratio: 6.464372e-02	ci left: 2.688209e-03	ci right 2.868529e-03	k: 3666	n:1320000
Cons ci ratio: 1.824419e-03	ci left: 7.769404e-01	ci right 7.783599e-01	k: 1026499	n:1320000
KS ci ratio: 1.062411e-01	ci left: 9.755551e-04	ci right 1.085744e-03	k: 1359	n:1320000
RLIM   1320000 perm   818 sec   (1614 perm/sec)   p_kst 1.029545e-03   p_cons 7.776508e-01   p_joint 2.777273e-03

Joint ci ratio: 6.437212e-02	ci left: 2.690929e-03	ci right 2.870645e-03	k: 3697	n:1330000
Cons ci ratio: 1.817601e-03	ci left: 7.769329e-01	ci right 7.783471e-01	k: 1034262	n:1330000
KS ci ratio: 1.056983e-01	ci left: 9.784675e-04	ci right 1.088386e-03	k: 1373	n:1330000
RLIM   1330000 perm   829 sec   (1605 perm/sec)   p_kst 1.032331e-03   p_cons 7.776406e-01   p_joint 2.779699e-03

Joint ci ratio: 6.416434e-02	ci left: 2.688470e-03	ci right 2.867421e-03	k: 3721	n:1340000
Cons ci ratio: 1.810777e-03	ci left: 7.769412e-01	ci right 7.783501e-01	k: 1042046	n:1340000
KS ci ratio: 1.054302e-01	ci left: 9.762514e-04	ci right 1.085625e-03	k: 1380	n:1340000
RLIM   1340000 perm   839 sec   (1597 perm/sec)   p_kst 1.029851e-03   p_cons 7.776463e-01   p_joint 2.776866e-03

Joint ci ratio: 6.389871e-02	ci left: 2.691151e-03	ci right 2.869511e-03	k: 3752	n:1350000
Cons ci ratio: 1.804214e-03	ci left: 7.769139e-01	ci right 7.783176e-01	k: 1049782	n:1350000
KS ci ratio: 1.048621e-01	ci left: 9.798389e-04	ci right 1.088987e-03	k: 1395	n:1350000
RLIM   1350000 perm   850 sec   (1589 perm/sec)   p_kst 1.033333e-03   p_cons 7.776163e-01   p_joint 2.779259e-03

Joint ci ratio: 6.357742e-02	ci left: 2.698860e-03	ci right 2.876798e-03	k: 3790	n:1360000
Cons ci ratio: 1.797313e-03	ci left: 7.769656e-01	ci right 7.783641e-01	k: 1057625	n:1360000
KS ci ratio: 1.042661e-01	ci left: 9.840914e-04	ci right 1.093051e-03	k: 1411	n:1360000
RLIM   1360000 perm   861 sec   (1580 perm/sec)   p_kst 1.037500e-03   p_cons 7.776654e-01   p_joint 2.786765e-03

Joint ci ratio: 6.335224e-02	ci left: 2.698555e-03	ci right 2.875820e-03	k: 3817	n:1370000
Cons ci ratio: 1.790922e-03	ci left: 7.769334e-01	ci right 7.783268e-01	k: 1065354	n:1370000
KS ci ratio: 1.039720e-01	ci left: 9.825955e-04	ci right 1.091064e-03	k: 1419	n:1370000
RLIM   1370000 perm   872 sec   (1572 perm/sec)   p_kst 1.035766e-03   p_cons 7.776307e-01   p_joint 2.786131e-03

Joint ci ratio: 6.308831e-02	ci left: 2.701822e-03	ci right 2.878535e-03	k: 3849	n:1380000
Cons ci ratio: 1.784628e-03	ci left: 7.768958e-01	ci right 7.782842e-01	k: 1073075	n:1380000
KS ci ratio: 1.037168e-01	ci left: 9.804160e-04	ci right 1.088362e-03	k: 1426	n:1380000
RLIM   1380000 perm   882 sec   (1564 perm/sec)   p_kst 1.033333e-03   p_cons 7.775906e-01   p_joint 2.789130e-03

Joint ci ratio: 6.287640e-02	ci left: 2.700795e-03	ci right 2.876826e-03	k: 3875	n:1390000
Cons ci ratio: 1.778152e-03	ci left: 7.769070e-01	ci right 7.782904e-01	k: 1080863	n:1390000
KS ci ratio: 1.033194e-01	ci left: 9.810714e-04	ci right 1.088651e-03	k: 1437	n:1390000
RLIM   1390000 perm   894 sec   (1556 perm/sec)   p_kst 1.033813e-03   p_cons 7.775993e-01   p_joint 2.787770e-03

Joint ci ratio: 6.261835e-02	ci left: 2.704002e-03	ci right 2.879493e-03	k: 3907	n:1400000
Cons ci ratio: 1.771892e-03	ci left: 7.768895e-01	ci right 7.782679e-01	k: 1088611	n:1400000
KS ci ratio: 1.028554e-01	ci left: 9.831101e-04	ci right 1.090400e-03	k: 1450	n:1400000
RLIM   1400000 perm   905 sec   (1547 perm/sec)   p_kst 1.035714e-03   p_cons 7.775793e-01   p_joint 2.790714e-03

Joint ci ratio: 6.233966e-02	ci left: 2.709260e-03	ci right 2.884281e-03	k: 3942	n:1410000
Cons ci ratio: 1.765702e-03	ci left: 7.768715e-01	ci right 7.782451e-01	k: 1096358	n:1410000
KS ci ratio: 1.025028e-01	ci left: 9.830478e-04	ci right 1.089941e-03	k: 1460	n:1410000
RLIM   1410000 perm   917 sec   (1538 perm/sec)   p_kst 1.035461e-03   p_cons 7.775589e-01   p_joint 2.795745e-03

Joint ci ratio: 6.215089e-02	ci left: 2.706819e-03	ci right 2.881134e-03	k: 3966	n:1420000
Cons ci ratio: 1.759290e-03	ci left: 7.769102e-01	ci right 7.782789e-01	k: 1104185	n:1420000
KS ci ratio: 1.022582e-01	ci left: 9.809282e-04	ci right 1.087321e-03	k: 1467	n:1420000
RLIM   1420000 perm   929 sec   (1529 perm/sec)   p_kst 1.033099e-03   p_cons 7.775951e-01   p_joint 2.792958e-03

Joint ci ratio: 6.196382e-02	ci left: 2.704413e-03	ci right 2.878030e-03	k: 3990	n:1430000
Cons ci ratio: 1.753032e-03	ci left: 7.769315e-01	ci right 7.782954e-01	k: 1111988	n:1430000
KS ci ratio: 1.018772e-01	ci left: 9.815645e-04	ci right 1.087606e-03	k: 1478	n:1430000
RLIM   1430000 perm   940 sec   (1521 perm/sec)   p_kst 1.033566e-03   p_cons 7.776140e-01   p_joint 2.790210e-03

Joint ci ratio: 6.174759e-02	ci left: 2.704776e-03	ci right 2.877789e-03	k: 4018	n:1440000
Cons ci ratio: 1.746812e-03	ci left: 7.769581e-01	ci right 7.783172e-01	k: 1119799	n:1440000
KS ci ratio: 1.013983e-01	ci left: 9.842232e-04	ci right 1.090022e-03	k: 1492	n:1440000
RLIM   1440000 perm   951 sec   (1514 perm/sec)   p_kst 1.036111e-03   p_cons 7.776382e-01   p_joint 2.790278e-03

Joint ci ratio: 6.157940e-02	ci left: 2.701061e-03	ci right 2.873348e-03	k: 4040	n:1450000
Cons ci ratio: 1.740731e-03	ci left: 7.769699e-01	ci right 7.783242e-01	k: 1127589	n:1450000
KS ci ratio: 1.011953e-01	ci left: 9.814685e-04	ci right 1.086748e-03	k: 1498	n:1450000
RLIM   1450000 perm   963 sec   (1506 perm/sec)   p_kst 1.033103e-03   p_cons 7.776476e-01   p_joint 2.786207e-03

Joint ci ratio: 6.136716e-02	ci left: 2.701444e-03	ci right 2.873141e-03	k: 4068	n:1460000
Cons ci ratio: 1.734750e-03	ci left: 7.769739e-01	ci right 7.783236e-01	k: 1135368	n:1460000
KS ci ratio: 1.007926e-01	ci left: 9.827578e-04	ci right 1.087731e-03	k: 1510	n:1460000
RLIM   1460000 perm   974 sec   (1498 perm/sec)   p_kst 1.034247e-03   p_cons 7.776493e-01   p_joint 2.786301e-03

Joint ci ratio: 6.117957e-02	ci left: 2.699813e-03	ci right 2.870863e-03	k: 4093	n:1470000
Cons ci ratio: 1.728848e-03	ci left: 7.769745e-01	ci right 7.783196e-01	k: 1143142	n:1470000
KS ci ratio: 1.003617e-01	ci left: 9.846935e-04	ci right 1.089397e-03	k: 1523	n:1470000
RLIM   1470000 perm   986 sec   (1491 perm/sec)   p_kst 1.036054e-03   p_cons 7.776476e-01   p_joint 2.784354e-03

Joint ci ratio: 6.099368e-02	ci left: 2.698205e-03	ci right 2.868615e-03	k: 4118	n:1480000
Cons ci ratio: 1.723046e-03	ci left: 7.769670e-01	ci right 7.783076e-01	k: 1150904	n:1480000
KS ci ratio: 9.990379e-02	ci left: 9.872628e-04	ci right 1.091733e-03	k: 1537	n:1480000
RLIM   1480000 perm   997 sec   (1484 perm/sec)   p_kst 1.038514e-03   p_cons 7.776378e-01   p_joint 2.782432e-03

Outputting figure to mutsig2_images.part000000000147/RLIM.2_1887_1480000_0.0010385_0.77764_0.0027824.png
                gene_name: RLIM
               theta_stop: 0.100 
                    nperm: 1480000 
                     p_ks: 0.0010 
        ci_ks_bounds_left: 0.00099 
       ci_ks_bounds_right: 0.0011 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.0028 
     ci_joint_bounds_left: 0.0027 
    ci_joint_bounds_right: 0.0029 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000147
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 147 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1711>
Subject: Job 9878092: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1711>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000148> was used as the working directory.
Started at Fri Oct  5 22:54:55 2012
Results reported at Fri Oct  5 22:57:10 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000148.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000148.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 148  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000148.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    148.14 sec.
    Max Memory :      1898 MB
    Max Swap   :      4635 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
148
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 148
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 148: processing genes 13329 - 13419
Calculating significance of each gene.
Using projection method.
13329	RNF125	1
13330	RNF126	1
13331	RNF128	1
13332	RNF13	1
13333	RNF130	1
13334	RNF133	1
13335	RNF135	1
13336	RNF138	1
13337	RNF139	1
13338	RNF14	1
13339	RNF141	1
13340	RNF144A	1
13341	RNF144B	1
13342	RNF145	1
13343	RNF146	1
13344	RNF148	1
13345	RNF149	1.182030e-01
13346	RNF150	1
13347	RNF151	1
13348	RNF152	1
13349	RNF157	1
13350	RNF160	5.712955e-02
13351	RNF165	1
13352	RNF166	1
13353	RNF167	1
13354	RNF168	1
13355	RNF169	1
13356	RNF17	5.066980e-03
13357	RNF170	1
13358	RNF175	1
13359	RNF180	1
13360	RNF181	1
13361	RNF182	1
13362	RNF183	1
13363	RNF185	1
13364	RNF186	1
13365	RNF19A	1
13366	RNF19B	1
13367	RNF2	1
13368	RNF20	2.295091e-01
13369	RNF207	1
13370	RNF208	1
13371	RNF212	1
13372	RNF213	1
13373	RNF214	3.452196e-02
13374	RNF215	1
13375	RNF216	1
13376	RNF217	1
13377	RNF219	1
13378	RNF220	1
13379	RNF24	1
13380	RNF25	1
13381	RNF26	9.100092e-02
13382	RNF31	1.654061e-01
13383	RNF32	1
13384	RNF34	1
13385	RNF38	1
13386	RNF39	1
13387	RNF4	1
13388	RNF40	1
13389	RNF41	1
13390	RNF43	1.531477e-01
13391	RNF44	1
13392	RNF5	1
13393	RNF6	1.822760e-01
13394	RNF7	1
13395	RNF8	1
13396	RNFT1	1
13397	RNFT2	1
13398	RNGTT	1
13399	RNH1	1
13400	RNLS	7.462037e-02
13401	RNMT	1
13402	RNMTL1	1
13403	RNPC3	1
13404	RNPEP	1
13405	RNPEPL1	1.094532e-01
13406	RNPS1	1
13407	ROBLD3	1
13408	ROBO1	1
13409	ROBO2	1.872967e-01
13410	ROBO3	1
13411	ROBO4	1.119689e-02
In gene ROCK1 the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 4139    n = 1	mu =   6.75e-07
13412	ROCK1	1.128844e-02
13413	ROCK2	1
13414	ROD1	1
13415	ROGDI	1
13416	ROM1	1
13417	ROMO1	1
13418	ROPN1	1
13419	ROPN1B	1
Done

Running MutSig 2:
Scatter job 148: processing genes 13329 - 13419
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
RNF17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.211259e-01	ci left: 8.902986e-02	ci right 1.006074e-01	k: 947	n:10000
Cons ci ratio: 6.093584e-02	ci left: 2.836945e-01	ci right 3.016265e-01	k: 2926	n:10000
KS ci ratio: 1.771017e-01	ci left: 4.255135e-02	ci right 5.091525e-02	k: 466	n:10000
RNF17   10000 perm   2 sec   (4751 perm/sec)   p_kst 4.660000e-02   p_cons 2.926000e-01   p_joint 9.470000e-02

Joint ci ratio: 7.676089e-02	ci left: 1.109048e-01	ci right 1.198074e-01	k: 2306	n:20000
Cons ci ratio: 4.120428e-02	ci left: 3.050846e-01	ci right 3.179703e-01	k: 6230	n:20000
KS ci ratio: 1.282881e-01	ci left: 4.173208e-02	ci right 4.750125e-02	k: 891	n:20000
RNF17   20000 perm   7 sec   (2968 perm/sec)   p_kst 4.455000e-02   p_cons 3.115000e-01   p_joint 1.153000e-01

Joint ci ratio: 6.699348e-02	ci left: 9.899128e-02	ci right 1.058859e-01	k: 3072	n:30000
Cons ci ratio: 3.520420e-02	ci left: 2.872564e-01	ci right 2.975838e-01	k: 8772	n:30000
KS ci ratio: 1.062952e-01	ci left: 4.105701e-02	ci right 4.569861e-02	k: 1300	n:30000
RNF17   30000 perm   9 sec   (3223 perm/sec)   p_kst 4.333333e-02   p_cons 2.924000e-01   p_joint 1.024000e-01

Joint ci ratio: 6.268765e-02	ci left: 8.625161e-02	ci right 9.185821e-02	k: 3561	n:40000
Cons ci ratio: 3.050864e-02	ci left: 2.876714e-01	ci right 2.966088e-01	k: 11685	n:40000
KS ci ratio: 9.171438e-02	ci left: 4.166844e-02	ci right 4.569814e-02	k: 1746	n:40000
RNF17   40000 perm   12 sec   (3349 perm/sec)   p_kst 4.365000e-02   p_cons 2.921250e-01   p_joint 8.902500e-02

Outputting figure to mutsig2_images.part000000000148/RNF17.3_5012_40000_0.04365_0.29213_0.089025.png
                gene_name: RNF17
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.046 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.089 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.092 

Current progress: 25 percent done.
ROCK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.714711e-02	ci left: 5.169577e-01	ci right 5.366267e-01	k: 5268	n:10000
Cons ci ratio: 6.971741e-02	ci left: 2.317548e-01	ci right 2.485968e-01	k: 2401	n:10000
KS ci ratio: 5.122836e-03	ci left: 9.805929e-01	ci right 9.857201e-01	k: 9833	n:10000
ROCK1   10000 perm   2 sec   (5114 perm/sec)   p_kst 9.833000e-01   p_cons 2.401000e-01   p_joint 5.268000e-01

Outputting figure to mutsig2_images.part000000000148/ROCK1.3_4197_10000_0.9833_0.2401_0.5268.png
                gene_name: ROCK1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 50 percent done.
RNF160
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.548400e-02	ci left: 6.938352e-01	ci right 7.118465e-01	k: 7029	n:10000
Cons ci ratio: 1.650160e-02	ci left: 8.423403e-01	ci right 8.564555e-01	k: 8495	n:10000
KS ci ratio: 2.187888e-01	ci left: 2.769020e-02	ci right 3.458650e-02	k: 310	n:10000
RNF160   10000 perm   2 sec   (4782 perm/sec)   p_kst 3.100000e-02   p_cons 8.495000e-01   p_joint 7.029000e-01

Joint ci ratio: 1.925486e-02	ci left: 6.679562e-01	ci right 6.809931e-01	k: 13490	n:20000
Cons ci ratio: 1.152821e-02	ci left: 8.475600e-01	ci right 8.574373e-01	k: 17051	n:20000
KS ci ratio: 1.528191e-01	ci left: 2.941145e-02	ci right 3.432589e-02	k: 636	n:20000
RNF160   20000 perm   5 sec   (4348 perm/sec)   p_kst 3.180000e-02   p_cons 8.525500e-01   p_joint 6.745000e-01

Joint ci ratio: 2.280820e-02	ci left: 4.904262e-01	ci right 5.017746e-01	k: 14883	n:30000
Cons ci ratio: 9.369453e-03	ci left: 8.496500e-01	ci right 8.576814e-01	k: 25611	n:30000
KS ci ratio: 1.262519e-01	ci left: 2.916455e-02	ci right 3.312694e-02	k: 933	n:30000
RNF160   30000 perm   7 sec   (4195 perm/sec)   p_kst 3.110000e-02   p_cons 8.537000e-01   p_joint 4.961000e-01

Joint ci ratio: 3.381954e-02	ci left: 2.471543e-01	ci right 2.556818e-01	k: 10056	n:40000
Cons ci ratio: 8.520927e-03	ci left: 8.374297e-01	ci right 8.446208e-01	k: 33642	n:40000
KS ci ratio: 1.105032e-01	ci left: 2.881216e-02	ci right 3.220645e-02	k: 1219	n:40000
RNF160   40000 perm   10 sec   (4075 perm/sec)   p_kst 3.047500e-02   p_cons 8.410500e-01   p_joint 2.514000e-01

Joint ci ratio: 2.141454e-02	ci left: 3.969396e-01	ci right 4.055519e-01	k: 20062	n:50000
Cons ci ratio: 7.593644e-03	ci left: 8.387933e-01	ci right 8.452070e-01	k: 42101	n:50000
KS ci ratio: 9.893775e-02	ci left: 2.893197e-02	ci right 3.196287e-02	k: 1521	n:50000
RNF160   50000 perm   13 sec   (3977 perm/sec)   p_kst 3.042000e-02   p_cons 8.420200e-01   p_joint 4.012400e-01

Outputting figure to mutsig2_images.part000000000148/RNF160.2_5559_50000_0.03042_0.84202_0.40124.png
                gene_name: RNF160
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 75 percent done.
ROBO4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.564171e-02	ci left: 2.036295e-01	ci right 2.197388e-01	k: 2116	n:10000
Cons ci ratio: 8.994959e-02	ci left: 1.523737e-01	ci right 1.668252e-01	k: 1595	n:10000
KS ci ratio: 1.328709e-02	ci left: 8.908764e-01	ci right 9.028912e-01	k: 8970	n:10000
ROBO4   10000 perm   2 sec   (5751 perm/sec)   p_kst 8.970000e-01   p_cons 1.595000e-01   p_joint 2.116000e-01

Outputting figure to mutsig2_images.part000000000148/ROBO4.2_3096_10000_0.897_0.1595_0.2116.png
                gene_name: ROBO4
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000148
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 148 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1647>
Subject: Job 9878101: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1647>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000149> was used as the working directory.
Started at Fri Oct  5 22:55:02 2012
Results reported at Fri Oct  5 22:57:10 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000149.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000149.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 149  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000149.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    140.30 sec.
    Max Memory :      2150 MB
    Max Swap   :      4653 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
149
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 149
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 149: processing genes 13420 - 13510
Calculating significance of each gene.
Using projection method.
13420	ROPN1L	1
13421	ROR1	1
13422	ROR2	3.018194e-02
13423	RORA	1
13424	RORB	4.919192e-02
13425	RORC	1
13426	ROS1	3.291756e-01
13427	RP1	3.325956e-03
13428	RP1L1	1.443646e-01
13429	RP2	1
13430	RP9	1
13431	RPA1	1
13432	RPA2	1
13433	RPA3	1
13434	RPA4	1
13435	RPAIN	1
13436	RPAP1	1
13437	RPAP2	1
13438	RPAP3	1
13439	RPE	1
13440	RPE65	7.487037e-03
13441	RPF1	1
13442	RPF2	1
13443	RPGR	1
13444	RPGRIP1	1.143554e-01
13445	RPGRIP1L	1
13446	RPH3A	1.187781e-01
13447	RPH3AL	1
13448	RPIA	1
13449	RPL10	1
13450	RPL10A	1
13451	RPL10L	1
13452	RPL11	1
13453	RPL12	1
13454	RPL13	1
13455	RPL13A	1
13456	RPL14	1
13457	RPL15	1
13458	RPL17	1
13459	RPL18	1
13460	RPL18A	1
13461	RPL19	7.099861e-02
13462	RPL21	1
13463	RPL22	1
13464	RPL22L1	1
13465	RPL23	1
13466	RPL23A	1
13467	RPL24	1
13468	RPL26	1
13469	RPL26L1	1
13470	RPL27	1
13471	RPL27A	1
13472	RPL28	1
13473	RPL29	1
13474	RPL3	1
13475	RPL30	1
13476	RPL31	1
13477	RPL32	1
13478	RPL34	1
13479	RPL35	1
13480	RPL35A	1
13481	RPL36	1
13482	RPL36A	1
13483	RPL36AL	1
13484	RPL37	1
13485	RPL37A	1
13486	RPL38	1
13487	RPL39	1
13488	RPL39L	1
13489	RPL3L	1
13490	RPL4	1
13491	RPL41	1
13492	RPL5	1
13493	RPL6	1
13494	RPL7	1
13495	RPL7A	1
13496	RPL7L1	1
13497	RPL8	1.209341e-01
13498	RPL9	1
13499	RPLP0	1
13500	RPLP1	1
13501	RPLP2	1
13502	RPN1	1
13503	RPN2	1
13504	RPP14	1
13505	RPP21	1
13506	RPP25	1
13507	RPP30	1
13508	RPP38	1
13509	RPP40	1
13510	RPRD1A	1
Done

Running MutSig 2:
Scatter job 149: processing genes 13420 - 13510
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
RP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.383989e-02	ci left: 2.649783e-01	ci right 2.825537e-01	k: 2737	n:10000
Cons ci ratio: 1.244153e-01	ci left: 8.465526e-02	ci right 9.598471e-02	k: 902	n:10000
KS ci ratio: 2.696950e-02	ci left: 6.694464e-01	ci right 6.878494e-01	k: 6787	n:10000
RP1   10000 perm   3 sec   (3977 perm/sec)   p_kst 6.787000e-01   p_cons 9.020000e-02   p_joint 2.737000e-01

Joint ci ratio: 4.198552e-02	ci left: 2.971320e-01	ci right 3.099252e-01	k: 6070	n:20000
Cons ci ratio: 8.956675e-02	ci left: 8.347212e-02	ci right 9.134831e-02	k: 1747	n:20000
KS ci ratio: 1.930749e-02	ci left: 6.667502e-01	ci right 6.797994e-01	k: 13466	n:20000
RP1   20000 perm   8 sec   (2513 perm/sec)   p_kst 6.733000e-01   p_cons 8.735000e-02   p_joint 3.035000e-01

Outputting figure to mutsig2_images.part000000000149/RP1.4_6483_20000_0.6733_0.08735_0.3035.png
                gene_name: RP1
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 25 percent done.
ROR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.618961e-02	ci left: 4.089058e-01	ci right 4.283416e-01	k: 4186	n:10000
Cons ci ratio: 5.651887e-02	ci left: 3.155244e-01	ci right 3.339778e-01	k: 3247	n:10000
KS ci ratio: 4.026683e-02	ci left: 4.766589e-01	ci right 4.963490e-01	k: 4865	n:10000
ROR2   10000 perm   2 sec   (5561 perm/sec)   p_kst 4.865000e-01   p_cons 3.247000e-01   p_joint 4.186000e-01

Outputting figure to mutsig2_images.part000000000149/ROR2.2_2868_10000_0.4865_0.3247_0.4186.png
                gene_name: ROR2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 50 percent done.
RP1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.686859e-02	ci left: 3.128451e-01	ci right 3.312586e-01	k: 3220	n:10000
Cons ci ratio: 1.161915e-02	ci left: 9.137886e-01	ci right 9.245657e-01	k: 9193	n:10000
KS ci ratio: 2.040185e-01	ci left: 3.195912e-02	ci right 3.931460e-02	k: 355	n:10000
RP1L1   10000 perm   2 sec   (4321 perm/sec)   p_kst 3.550000e-02   p_cons 9.193000e-01   p_joint 3.220000e-01

Joint ci ratio: 2.860082e-02	ci left: 4.773516e-01	ci right 4.912530e-01	k: 9686	n:20000
Cons ci ratio: 7.985238e-03	ci left: 9.196272e-01	ci right 9.270491e-01	k: 18468	n:20000
KS ci ratio: 1.403283e-01	ci left: 3.490943e-02	ci right 4.022610e-02	k: 750	n:20000
RP1L1   20000 perm   5 sec   (4010 perm/sec)   p_kst 3.750000e-02   p_cons 9.234000e-01   p_joint 4.843000e-01

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 6.530175e-03	ci left: 9.200951e-01	ci right 9.261560e-01	k: 27695	n:30000
KS ci ratio: 1.156222e-01	ci left: 3.476265e-02	ci right 3.906096e-02	k: 1106	n:30000
RP1L1   30000 perm   8 sec   (3859 perm/sec)   p_kst 3.686667e-02   p_cons 9.231667e-01   p_joint 1

Joint ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
Cons ci ratio: 5.702441e-03	ci left: 9.193033e-01	ci right 9.245852e-01	k: 36879	n:40000
KS ci ratio: 9.940024e-02	ci left: 3.556173e-02	ci right 3.930581e-02	k: 1496	n:40000
RP1L1   40000 perm   11 sec   (3734 perm/sec)   p_kst 3.740000e-02   p_cons 9.219750e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000149/RP1L1.2_7215_40000_0.0374_0.92197_1.png
                gene_name: RP1L1
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.037 
        ci_ks_bounds_left: 0.036 
       ci_ks_bounds_right: 0.039 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
RPE65
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.440563e-02	ci left: 5.550151e-01	ci right 5.745471e-01	k: 5648	n:10000
Cons ci ratio: 1.101379e-02	ci left: 9.216228e-01	ci right 9.319269e-01	k: 9269	n:10000
KS ci ratio: 1.086875e-01	ci left: 1.088101e-01	ci right 1.214151e-01	k: 1150	n:10000
RPE65   10000 perm   2 sec   (6167 perm/sec)   p_kst 1.150000e-01   p_cons 9.269000e-01   p_joint 5.648000e-01

Joint ci ratio: 2.866961e-02	ci left: 4.761523e-01	ci right 4.900526e-01	k: 9662	n:20000
Cons ci ratio: 7.734256e-03	ci left: 9.241254e-01	ci right 9.313496e-01	k: 18556	n:20000
KS ci ratio: 7.672330e-02	ci left: 1.110031e-01	ci right 1.199090e-01	k: 2308	n:20000
RPE65   20000 perm   4 sec   (5555 perm/sec)   p_kst 1.154000e-01   p_cons 9.278000e-01   p_joint 4.831000e-01

Outputting figure to mutsig2_images.part000000000149/RPE65.2_1658_20000_0.1154_0.9278_0.4831.png
                gene_name: RPE65
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.49 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000149
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 149 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1708>
Subject: Job 9878112: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1708>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000150> was used as the working directory.
Started at Fri Oct  5 22:55:02 2012
Results reported at Fri Oct  5 22:58:12 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000150.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000150.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 150  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000150.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    205.33 sec.
    Max Memory :      1909 MB
    Max Swap   :      4650 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
150
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 150
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 150: processing genes 13511 - 13601
Calculating significance of each gene.
Using projection method.
13511	RPRD1B	1
13512	RPRD2	1
13513	RPRM	1
13514	RPRML	1
13515	RPS10	1
13516	RPS11	1
13517	RPS12	1
13518	RPS13	1
13519	RPS14	1
13520	RPS15	1
13521	RPS15A	1
13522	RPS16	1
13523	RPS18	9.871709e-04
13524	RPS19	1
13525	RPS19BP1	1
13526	RPS2	1
13527	RPS20	1
13528	RPS21	1
13529	RPS23	1
13530	RPS24	1
13531	RPS25	1
13532	RPS26	1
13533	RPS27	1
13534	RPS27A	1
13535	RPS27L	1
13536	RPS28	1
13537	RPS29	1
13538	RPS3	1
13539	RPS3A	1
13540	RPS4X	1
13541	RPS4Y1	1
13542	RPS4Y2	1
13543	RPS5	1
13544	RPS6	1
13545	RPS6KA1	1
13546	RPS6KA2	1
13547	RPS6KA3	1
13548	RPS6KA4	1
13549	RPS6KA5	1.281136e-01
13550	RPS6KA6	1
13551	RPS6KB1	1
13552	RPS6KB2	8.899338e-02
13553	RPS6KC1	1
13554	RPS6KL1	1
13555	RPS7	1
13556	RPS8	1
13557	RPS9	1
13558	RPSA	1
13559	RPTN	1
13560	RPTOR	1
13561	RPUSD1	1
13562	RPUSD2	1
13563	RPUSD3	1
13564	RPUSD4	1
13565	RQCD1	1
13566	RRAD	3.611034e-02
13567	RRAGA	1
13568	RRAGB	1
13569	RRAGC	3.203896e-02
13570	RRAGD	1
13571	RRAS	1
13572	RRAS2	1
13573	RRBP1	1.145409e-01
13574	RREB1	3.692515e-01
13575	RRH	1
13576	RRM1	1
13577	RRM2	1
13578	RRM2B	1
13579	RRN3	1
13580	RRP1	1.107064e-01
13581	RRP12	1
13582	RRP15	1
13583	RRP1B	1
13584	RRP7A	1
13585	RRP8	1
13586	RRP9	1
13587	RRS1	1
13588	RS1	1
13589	RSAD1	1
13590	RSAD2	1
13591	RSBN1	1.948477e-01
13592	RSBN1L	1
13593	RSC1A1	1
13594	RSF1	1
13595	RSL1D1	1
13596	RSL24D1	1
13597	RSPH1	1
13598	RSPH10B	1
13599	RSPH10B2	1
13600	RSPH3	1
13601	RSPH4A	3.651906e-02
Done

Running MutSig 2:
Scatter job 150: processing genes 13511 - 13601
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
RPS18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.874410e-01	ci left: 3.796147e-02	ci right 4.590818e-02	k: 418	n:10000
Cons ci ratio: 3.556785e-02	ci left: 5.385833e-01	ci right 5.581885e-01	k: 5484	n:10000
KS ci ratio: 5.585987e-01	ci left: 3.541199e-03	ci right 6.359123e-03	k: 48	n:10000
RPS18   10000 perm   1 sec   (6835 perm/sec)   p_kst 4.800000e-03   p_cons 5.484000e-01   p_joint 4.180000e-02

Joint ci ratio: 1.619766e-01	ci left: 2.614160e-02	ci right 3.079684e-02	k: 568	n:20000
Cons ci ratio: 2.515191e-02	ci left: 5.414714e-01	ci right 5.553145e-01	k: 10968	n:20000
KS ci ratio: 4.242687e-01	ci left: 3.351426e-03	ci right 5.197284e-03	k: 84	n:20000
RPS18   20000 perm   5 sec   (3859 perm/sec)   p_kst 4.200000e-03   p_cons 5.484000e-01   p_joint 2.840000e-02

Joint ci ratio: 8.308915e-02	ci left: 6.618981e-02	ci right 7.196065e-02	k: 2071	n:30000
Cons ci ratio: 2.044722e-02	ci left: 5.449164e-01	ci right 5.562071e-01	k: 16517	n:30000
KS ci ratio: 3.471010e-01	ci left: 3.499882e-03	ci right 4.998632e-03	k: 126	n:30000
RPS18   30000 perm   7 sec   (4264 perm/sec)   p_kst 4.200000e-03   p_cons 5.505667e-01   p_joint 6.903333e-02

Joint ci ratio: 6.011915e-02	ci left: 9.317928e-02	ci right 9.897951e-02	k: 3842	n:40000
Cons ci ratio: 1.776503e-02	ci left: 5.440827e-01	ci right 5.538601e-01	k: 21959	n:40000
KS ci ratio: 2.991247e-01	ci left: 3.636202e-03	ci right 4.937384e-03	k: 170	n:40000
RPS18   40000 perm   9 sec   (4465 perm/sec)   p_kst 4.250000e-03   p_cons 5.489750e-01   p_joint 9.605000e-02

Joint ci ratio: 5.492946e-02	ci left: 8.989515e-02	ci right 9.499229e-02	k: 4621	n:50000
Cons ci ratio: 1.588498e-02	ci left: 5.447458e-01	ci right 5.534885e-01	k: 27456	n:50000
KS ci ratio: 2.649139e-01	ci left: 3.782748e-03	ci right 4.955943e-03	k: 217	n:50000
RPS18   50000 perm   11 sec   (4560 perm/sec)   p_kst 4.340000e-03   p_cons 5.491200e-01   p_joint 9.242000e-02

Joint ci ratio: 4.918878e-02	ci left: 9.335738e-02	ci right 9.808181e-02	k: 5742	n:60000
Cons ci ratio: 1.453969e-02	ci left: 5.438070e-01	ci right 5.517884e-01	k: 32868	n:60000
KS ci ratio: 2.375827e-01	ci left: 3.980202e-03	ci right 5.068579e-03	k: 270	n:60000
RPS18   60000 perm   13 sec   (4600 perm/sec)   p_kst 4.500000e-03   p_cons 5.478000e-01   p_joint 9.570000e-02

Joint ci ratio: 4.549934e-02	ci left: 9.368591e-02	ci right 9.806194e-02	k: 6710	n:70000
Cons ci ratio: 1.345381e-02	ci left: 5.443755e-01	ci right 5.517633e-01	k: 38365	n:70000
KS ci ratio: 2.269768e-01	ci left: 3.761374e-03	ci right 4.737567e-03	k: 296	n:70000
RPS18   70000 perm   15 sec   (4567 perm/sec)   p_kst 4.228571e-03   p_cons 5.480714e-01   p_joint 9.585714e-02

Joint ci ratio: 4.336497e-02	ci left: 9.066177e-02	ci right 9.469282e-02	k: 7413	n:80000
Cons ci ratio: 1.260834e-02	ci left: 5.436928e-01	ci right 5.506038e-01	k: 43772	n:80000
KS ci ratio: 2.099784e-01	ci left: 3.882072e-03	ci right 4.804442e-03	k: 346	n:80000
RPS18   80000 perm   18 sec   (4523 perm/sec)   p_kst 4.325000e-03   p_cons 5.471500e-01   p_joint 9.266250e-02

Joint ci ratio: 4.088423e-02	ci left: 9.077986e-02	ci right 9.457978e-02	k: 8340	n:90000
Cons ci ratio: 1.189168e-02	ci left: 5.437075e-01	ci right 5.502228e-01	k: 49227	n:90000
KS ci ratio: 1.960558e-01	ci left: 3.988641e-03	ci right 4.865995e-03	k: 397	n:90000
RPS18   90000 perm   20 sec   (4492 perm/sec)   p_kst 4.411111e-03   p_cons 5.469667e-01   p_joint 9.266667e-02

Joint ci ratio: 3.874194e-02	ci left: 9.106796e-02	ci right 9.467570e-02	k: 9286	n:100000
Cons ci ratio: 1.128752e-02	ci left: 5.436083e-01	ci right 5.497890e-01	k: 54670	n:100000
KS ci ratio: 1.849939e-01	ci left: 4.056433e-03	ci right 4.892709e-03	k: 446	n:100000
RPS18   100000 perm   22 sec   (4450 perm/sec)   p_kst 4.460000e-03   p_cons 5.467000e-01   p_joint 9.286000e-02

Joint ci ratio: 3.631095e-02	ci left: 9.405784e-02	ci right 9.754532e-02	k: 10537	n:110000
Cons ci ratio: 1.077054e-02	ci left: 5.433704e-01	ci right 5.492635e-01	k: 60095	n:110000
KS ci ratio: 1.765111e-01	ci left: 4.069577e-03	ci right 4.865988e-03	k: 490	n:110000
RPS18   110000 perm   25 sec   (4410 perm/sec)   p_kst 4.454545e-03   p_cons 5.463182e-01   p_joint 9.579091e-02

Joint ci ratio: 3.479356e-02	ci left: 9.399156e-02	ci right 9.732801e-02	k: 11478	n:120000
Cons ci ratio: 1.031274e-02	ci left: 5.434613e-01	ci right 5.491032e-01	k: 65554	n:120000
KS ci ratio: 1.710350e-01	ci left: 3.985500e-03	ci right 4.738761e-03	k: 522	n:120000
RPS18   120000 perm   28 sec   (4357 perm/sec)   p_kst 4.350000e-03   p_cons 5.462833e-01   p_joint 9.565000e-02

Joint ci ratio: 3.344134e-02	ci left: 9.399152e-02	ci right 9.719578e-02	k: 12426	n:130000
Cons ci ratio: 9.904915e-03	ci left: 5.437351e-01	ci right 5.491552e-01	k: 71038	n:130000
KS ci ratio: 1.638298e-01	ci left: 4.025324e-03	ci right 4.750903e-03	k: 569	n:130000
RPS18   130000 perm   30 sec   (4294 perm/sec)   p_kst 4.376923e-03   p_cons 5.464462e-01   p_joint 9.558462e-02

Joint ci ratio: 3.226880e-02	ci left: 9.381636e-02	ci right 9.690042e-02	k: 13349	n:140000
Cons ci ratio: 9.546748e-03	ci left: 5.437234e-01	ci right 5.489461e-01	k: 76487	n:140000
KS ci ratio: 1.577215e-01	ci left: 4.046303e-03	ci right 4.745897e-03	k: 614	n:140000
RPS18   140000 perm   33 sec   (4241 perm/sec)   p_kst 4.385714e-03   p_cons 5.463357e-01   p_joint 9.535000e-02

Joint ci ratio: 3.116087e-02	ci left: 9.394434e-02	ci right 9.692465e-02	k: 14314	n:150000
Cons ci ratio: 9.229289e-03	ci left: 5.434762e-01	ci right 5.485220e-01	k: 81900	n:150000
KS ci ratio: 1.505405e-01	ci left: 4.161146e-03	ci right 4.844891e-03	k: 674	n:150000
RPS18   150000 perm   36 sec   (4190 perm/sec)   p_kst 4.493333e-03   p_cons 5.460000e-01   p_joint 9.542667e-02

Joint ci ratio: 3.077826e-02	ci left: 9.063152e-02	ci right 9.347078e-02	k: 14727	n:160000
Cons ci ratio: 8.937465e-03	ci left: 5.434877e-01	ci right 5.483731e-01	k: 87349	n:160000
KS ci ratio: 1.457603e-01	ci left: 4.171902e-03	ci right 4.833750e-03	k: 719	n:160000
RPS18   160000 perm   39 sec   (4141 perm/sec)   p_kst 4.493750e-03   p_cons 5.459312e-01   p_joint 9.204375e-02

Joint ci ratio: 2.980532e-02	ci left: 9.097483e-02	ci right 9.373320e-02	k: 15699	n:170000
Cons ci ratio: 8.670856e-03	ci left: 5.435472e-01	ci right 5.482865e-01	k: 92806	n:170000
KS ci ratio: 1.402164e-01	ci left: 4.255482e-03	ci right 4.902768e-03	k: 777	n:170000
RPS18   170000 perm   42 sec   (4093 perm/sec)   p_kst 4.570588e-03   p_cons 5.459176e-01   p_joint 9.234706e-02

Joint ci ratio: 2.464742e-02	ci left: 1.216905e-01	ci right 1.247328e-01	k: 22177	n:180000
Cons ci ratio: 8.430545e-03	ci left: 5.433797e-01	ci right 5.479855e-01	k: 98223	n:180000
KS ci ratio: 1.359979e-01	ci left: 4.281888e-03	ci right 4.912009e-03	k: 826	n:180000
RPS18   180000 perm   45 sec   (4044 perm/sec)   p_kst 4.588889e-03   p_cons 5.456833e-01   p_joint 1.232056e-01

Joint ci ratio: 2.435155e-02	ci left: 1.185525e-01	ci right 1.214802e-01	k: 22802	n:190000
Cons ci ratio: 8.203849e-03	ci left: 5.435526e-01	ci right 5.480354e-01	k: 103701	n:190000
KS ci ratio: 1.322143e-01	ci left: 4.300684e-03	ci right 4.914581e-03	k: 874	n:190000
RPS18   190000 perm   48 sec   (3995 perm/sec)   p_kst 4.600000e-03   p_cons 5.457947e-01   p_joint 1.200105e-01

Joint ci ratio: 2.374967e-02	ci left: 1.184595e-01	ci right 1.213116e-01	k: 23976	n:200000
Cons ci ratio: 8.001364e-03	ci left: 5.432846e-01	ci right 5.476541e-01	k: 109094	n:200000
KS ci ratio: 1.285203e-01	ci left: 4.332339e-03	ci right 4.932158e-03	k: 925	n:200000
RPS18   200000 perm   51 sec   (3945 perm/sec)   p_kst 4.625000e-03   p_cons 5.454700e-01   p_joint 1.198800e-01

Joint ci ratio: 2.283738e-02	ci left: 1.216313e-01	ci right 1.244458e-01	k: 25837	n:210000
Cons ci ratio: 7.809037e-03	ci left: 5.433055e-01	ci right 5.475695e-01	k: 114542	n:210000
KS ci ratio: 1.257026e-01	ci left: 4.319676e-03	ci right 4.903652e-03	k: 967	n:210000
RPS18   210000 perm   54 sec   (3895 perm/sec)   p_kst 4.604762e-03   p_cons 5.454381e-01   p_joint 1.230333e-01

Joint ci ratio: 2.232001e-02	ci left: 1.215896e-01	ci right 1.243386e-01	k: 27051	n:220000
Cons ci ratio: 7.634700e-03	ci left: 5.430163e-01	ci right 5.471825e-01	k: 119922	n:220000
KS ci ratio: 1.220348e-01	ci left: 4.383208e-03	ci right 4.957235e-03	k: 1026	n:220000
RPS18   220000 perm   57 sec   (3845 perm/sec)   p_kst 4.663636e-03   p_cons 5.451000e-01   p_joint 1.229591e-01

Joint ci ratio: 2.181474e-02	ci left: 1.217642e-01	ci right 1.244540e-01	k: 28314	n:230000
Cons ci ratio: 7.466624e-03	ci left: 5.430796e-01	ci right 5.471541e-01	k: 125377	n:230000
KS ci ratio: 1.188906e-01	ci left: 4.424565e-03	ci right 4.988029e-03	k: 1081	n:230000
RPS18   230000 perm   61 sec   (3796 perm/sec)   p_kst 4.700000e-03   p_cons 5.451174e-01   p_joint 1.231043e-01

Joint ci ratio: 2.135011e-02	ci left: 1.218461e-01	ci right 1.244797e-01	k: 29558	n:240000
Cons ci ratio: 7.311945e-03	ci left: 5.429509e-01	ci right 5.469396e-01	k: 130787	n:240000
KS ci ratio: 1.163379e-01	ci left: 4.434325e-03	ci right 4.986074e-03	k: 1129	n:240000
RPS18   240000 perm   64 sec   (3747 perm/sec)   p_kst 4.704167e-03   p_cons 5.449458e-01   p_joint 1.231583e-01

Joint ci ratio: 2.091783e-02	ci left: 1.218822e-01	ci right 1.244626e-01	k: 30792	n:250000
Cons ci ratio: 7.165051e-03	ci left: 5.429334e-01	ci right 5.468415e-01	k: 136222	n:250000
KS ci ratio: 1.138943e-01	ci left: 4.447310e-03	ci right 4.988270e-03	k: 1178	n:250000
RPS18   250000 perm   68 sec   (3700 perm/sec)   p_kst 4.712000e-03   p_cons 5.448880e-01   p_joint 1.231680e-01

Joint ci ratio: 2.049255e-02	ci left: 1.221074e-01	ci right 1.246394e-01	k: 32076	n:260000
Cons ci ratio: 7.021221e-03	ci left: 5.433028e-01	ci right 5.471347e-01	k: 141757	n:260000
KS ci ratio: 1.117356e-01	ci left: 4.448191e-03	ci right 4.978327e-03	k: 1224	n:260000
RPS18   260000 perm   71 sec   (3655 perm/sec)   p_kst 4.707692e-03   p_cons 5.452192e-01   p_joint 1.233692e-01

Joint ci ratio: 2.011249e-02	ci left: 1.220989e-01	ci right 1.245832e-01	k: 33301	n:270000
Cons ci ratio: 6.894667e-03	ci left: 5.430008e-01	ci right 5.467612e-01	k: 147118	n:270000
KS ci ratio: 1.100438e-01	ci left: 4.420277e-03	ci right 4.938592e-03	k: 1262	n:270000
RPS18   270000 perm   75 sec   (3609 perm/sec)   p_kst 4.674074e-03   p_cons 5.448815e-01   p_joint 1.233370e-01

Joint ci ratio: 1.972740e-02	ci left: 1.223688e-01	ci right 1.248104e-01	k: 34604	n:280000
Cons ci ratio: 6.762527e-03	ci left: 5.436141e-01	ci right 5.473063e-01	k: 152729	n:280000
KS ci ratio: 1.082594e-01	ci left: 4.408313e-03	ci right 4.916309e-03	k: 1304	n:280000
RPS18   280000 perm   79 sec   (3564 perm/sec)   p_kst 4.657143e-03   p_cons 5.454607e-01   p_joint 1.235857e-01

Joint ci ratio: 1.939445e-02	ci left: 1.222771e-01	ci right 1.246752e-01	k: 35807	n:290000
Cons ci ratio: 6.647295e-03	ci left: 5.434683e-01	ci right 5.470963e-01	k: 158132	n:290000
KS ci ratio: 1.061246e-01	ci left: 4.434164e-03	ci right 4.934434e-03	k: 1357	n:290000
RPS18   290000 perm   82 sec   (3515 perm/sec)   p_kst 4.679310e-03   p_cons 5.452828e-01   p_joint 1.234724e-01

Joint ci ratio: 1.907780e-02	ci left: 1.221919e-01	ci right 1.245488e-01	k: 37010	n:300000
Cons ci ratio: 6.534023e-03	ci left: 5.436161e-01	ci right 5.471830e-01	k: 163620	n:300000
KS ci ratio: 1.045590e-01	ci left: 4.419423e-03	ci right 4.910222e-03	k: 1398	n:300000
RPS18   300000 perm   86 sec   (3470 perm/sec)   p_kst 4.660000e-03   p_cons 5.454000e-01   p_joint 1.233667e-01

Joint ci ratio: 1.875518e-02	ci left: 1.223534e-01	ci right 1.246730e-01	k: 38288	n:310000
Cons ci ratio: 6.428442e-03	ci left: 5.435935e-01	ci right 5.471024e-01	k: 169058	n:310000
KS ci ratio: 1.027743e-01	ci left: 4.430828e-03	ci right 4.913987e-03	k: 1447	n:310000
RPS18   310000 perm   90 sec   (3428 perm/sec)   p_kst 4.667742e-03   p_cons 5.453484e-01   p_joint 1.235097e-01

Joint ci ratio: 1.845931e-02	ci left: 1.223775e-01	ci right 1.246606e-01	k: 39525	n:320000
Cons ci ratio: 6.324111e-03	ci left: 5.438635e-01	ci right 5.473169e-01	k: 174589	n:320000
KS ci ratio: 1.010779e-01	ci left: 4.441587e-03	ci right 4.917451e-03	k: 1496	n:320000
RPS18   320000 perm   95 sec   (3386 perm/sec)   p_kst 4.675000e-03   p_cons 5.455906e-01   p_joint 1.235156e-01

Joint ci ratio: 1.817625e-02	ci left: 1.224094e-01	ci right 1.246578e-01	k: 40765	n:330000
Cons ci ratio: 6.226638e-03	ci left: 5.439629e-01	ci right 5.473635e-01	k: 180069	n:330000
KS ci ratio: 9.946287e-02	ci left: 4.451756e-03	ci right 4.920643e-03	k: 1545	n:330000
RPS18   330000 perm   99 sec   (3346 perm/sec)   p_kst 4.681818e-03   p_cons 5.456636e-01   p_joint 1.235303e-01

Outputting figure to mutsig2_images.part000000000150/RPS18.2_483_330000_0.0046818_0.54566_0.12353.png
                gene_name: RPS18
               theta_stop: 0.099 
                    nperm: 330000 
                     p_ks: 0.0047 
        ci_ks_bounds_left: 0.0045 
       ci_ks_bounds_right: 0.0049 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000150
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 150 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 9878125: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000151> was used as the working directory.
Started at Fri Oct  5 22:55:36 2012
Results reported at Fri Oct  5 22:56:36 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000151.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000151.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 151  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000151.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     53.96 sec.
    Max Memory :       886 MB
    Max Swap   :      3711 MB

    Max Processes  :         7
    Max Threads    :        67

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
151
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 151
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 151: processing genes 13602 - 13691
Calculating significance of each gene.
Using projection method.
13602	RSPH6A	6.965393e-02
13603	RSPH9	1
13604	RSPO1	1
13605	RSPO2	1.514063e-02
13606	RSPO3	1
13607	RSPO4	1
13608	RSPRY1	1.708170e-01
13609	RSRC1	1
13610	RSRC2	1
13611	RSU1	1
13612	RTBDN	8.486816e-03
13613	RTCD1	1
13614	RTDR1	1
13615	RTEL1	1
13616	RTF1	1
13617	RTKN	1
13618	RTKN2	1
13619	RTL1	1.592953e-03
13620	RTN1	1
13621	RTN2	1
13622	RTN3	1.568528e-01
13623	RTN4	1
13624	RTN4IP1	1
13625	RTN4R	6.359489e-02
13626	RTN4RL1	7.847743e-02
13627	RTN4RL2	1
13628	RTP1	1
13629	RTP2	1
13630	RTP3	5.706624e-02
13631	RTP4	1
13632	RTTN	1
13633	RUFY1	1
13634	RUFY2	1
13635	RUFY3	1
13636	RUFY4	1
13637	RUNDC1	1
13638	RUNDC2A	1.413249e-01
13639	RUNDC3A	1
13640	RUNDC3B	1
13641	RUNX1	1
13642	RUNX1T1	1
13643	RUNX2	1
13644	RUNX3	1.193434e-01
13645	RUSC1	1
13646	RUSC2	1
13647	RUVBL1	1
13648	RUVBL2	1
13649	RWDD1	1
13650	RWDD2A	7.892160e-02
13651	RWDD2B	1
13652	RWDD3	1
13653	RWDD4A	4.362218e-02
13654	RXFP1	5.019339e-02
13655	RXFP2	1
13656	RXFP3	1
13657	RXFP4	1
13658	RXRA	1
13659	RXRB	9.169196e-02
13660	RXRG	1
13661	RYBP	4.688533e-02
13662	RYK	1
13663	RYR1	8.328389e-01
13664	RYR2	1
13665	RYR3	1
13666	S100A1	1
13667	S100A10	1
13668	S100A11	1
13669	S100A12	1
13670	S100A13	1
13671	S100A14	1
13672	S100A16	1
13673	S100A2	1
13674	S100A3	1
13675	S100A4	1
13676	S100A5	1
13677	S100A6	1
13678	S100A7	1
13679	S100A7A	1
13680	S100A7L2	4.829571e-03
13681	S100A8	1
13682	S100A9	1
13683	S100B	1
13684	S100G	1
13685	S100P	1
13686	S100PBP	6.945931e-02
13687	S100Z	1
13688	S1PR1	1
13689	S1PR2	1
13690	S1PR3	1
13691	S1PR4	1
Done

Running MutSig 2:
Scatter job 151: processing genes 13602 - 13691
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
RTL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.042605e-02	ci left: 6.144213e-01	ci right 6.335064e-01	k: 6240	n:10000
Cons ci ratio: 3.945361e-02	ci left: 4.868526e-01	ci right 5.065494e-01	k: 4967	n:10000
KS ci ratio: 1.647580e-02	ci left: 8.427478e-01	ci right 8.568478e-01	k: 8499	n:10000
RTL1   10000 perm   2 sec   (5811 perm/sec)   p_kst 8.499000e-01   p_cons 4.967000e-01   p_joint 6.240000e-01

Outputting figure to mutsig2_images.part000000000151/RTL1.2_4081_10000_0.8499_0.4967_0.624.png
                gene_name: RTL1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000151
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 151 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1649>
Subject: Job 9878135: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1649>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000152> was used as the working directory.
Started at Fri Oct  5 22:55:44 2012
Results reported at Fri Oct  5 22:58:05 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000152.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000152.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 152  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000152.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    145.33 sec.
    Max Memory :      1936 MB
    Max Swap   :      4704 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
152
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 152
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 152: processing genes 13692 - 13782
Calculating significance of each gene.
Using projection method.
13692	S1PR5	1
13693	SAA1	1
13694	SAA2	1
13695	SAA4	1
13696	SAAL1	1
13697	SAC3D1	1
13698	SACM1L	1
13699	SACS	7.791726e-01
13700	SAE1	1
13701	SAFB	1
13702	SAFB2	1
13703	SAG	1
13704	SAGE1	1
13705	SALL1	2.499835e-03
13706	SALL2	1
13707	SALL3	8.911604e-04
13708	SALL4	3.266696e-01
13709	SAMD1	1
13710	SAMD10	1
13711	SAMD11	1
13712	SAMD12	1
13713	SAMD13	1
13714	SAMD14	1
13715	SAMD3	1
13716	SAMD4A	1
13717	SAMD4B	1
13718	SAMD5	1
13719	SAMD7	1
13720	SAMD8	1
13721	SAMD9	1
13722	SAMD9L	1
13723	SAMHD1	1
13724	SAMM50	1
13725	SAMSN1	3.809712e-02
13726	SAP130	1
13727	SAP18	1
13728	SAP30	1
13729	SAP30BP	1
13730	SAP30L	1
13731	SAPS1	1
13732	SAPS2	1
13733	SAPS3	1
13734	SAR1A	1
13735	SAR1B	1
13736	SARDH	3.264094e-02
13737	SARM1	1
13738	SARNP	1
13739	SARS	1.849116e-01
13740	SARS2	1
13741	SART1	1
13742	SART3	1
13743	SASH1	1
13744	SASH3	1
13745	SASS6	1
13746	SAT1	1
13747	SAT2	1
13748	SATB1	1
13749	SATB2	1
13750	SATL1	1
13751	SAV1	1
13752	SBDS	1
13753	SBF1	1
13754	SBF2	1
13755	SBK1	1
13756	SBK2	6.022174e-02
13757	SBNO1	1
13758	SBNO2	1
13759	SBSN	1
13760	SC4MOL	1
13761	SC5DL	1
13762	SC65	1
13763	SCAF1	6.619007e-02
13764	SCAI	3.204566e-06
13765	SCAMP1	2.749224e-02
13766	SCAMP2	1
13767	SCAMP3	1
13768	SCAMP4	1
13769	SCAMP5	1
13770	SCAND1	1
13771	SCAND3	1
13772	SCAP	1
13773	SCAPER	1
13774	SCARA3	1
13775	SCARA5	1.257747e-01
13776	SCARB1	1.692078e-01
13777	SCARB2	1
13778	SCARF1	1
13779	SCARF2	1
13780	SCCPDH	1
13781	SCD	1
13782	SCD5	1
Done

Running MutSig 2:
Scatter job 152: processing genes 13692 - 13782
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SCAI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.988626e-01	ci left: 3.367125e-02	ci right 4.120130e-02	k: 373	n:10000
Cons ci ratio: 4.900521e-02	ci left: 3.805230e-01	ci right 3.997410e-01	k: 3901	n:10000
KS ci ratio: 3.402247e-01	ci left: 1.087258e-02	ci right 1.541759e-02	k: 130	n:10000
SCAI   10000 perm   2 sec   (5821 perm/sec)   p_kst 1.300000e-02   p_cons 3.901000e-01   p_joint 3.730000e-02

Joint ci ratio: 1.435362e-01	ci left: 3.336431e-02	ci right 3.857172e-02	k: 718	n:20000
Cons ci ratio: 3.472824e-02	ci left: 3.823346e-01	ci right 3.958976e-01	k: 7782	n:20000
KS ci ratio: 2.463622e-01	ci left: 1.095946e-02	ci right 1.408466e-02	k: 249	n:20000
SCAI   20000 perm   6 sec   (3132 perm/sec)   p_kst 1.245000e-02   p_cons 3.891000e-01   p_joint 3.590000e-02

Joint ci ratio: 1.400009e-01	ci left: 2.368120e-02	ci right 2.727816e-02	k: 763	n:30000
Cons ci ratio: 2.849208e-02	ci left: 3.813167e-01	ci right 3.923718e-01	k: 11605	n:30000
KS ci ratio: 1.995451e-01	ci left: 1.143190e-02	ci right 1.399710e-02	k: 380	n:30000
SCAI   30000 perm   9 sec   (3486 perm/sec)   p_kst 1.266667e-02   p_cons 3.868333e-01   p_joint 2.543333e-02

Joint ci ratio: 1.089023e-01	ci left: 2.966386e-02	ci right 3.310462e-02	k: 1254	n:40000
Cons ci ratio: 2.459139e-02	ci left: 3.836693e-01	ci right 3.932469e-01	k: 15538	n:40000
KS ci ratio: 1.740303e-01	ci left: 1.143422e-02	ci right 1.363740e-02	k: 500	n:40000
SCAI   40000 perm   11 sec   (3712 perm/sec)   p_kst 1.250000e-02   p_cons 3.884500e-01   p_joint 3.135000e-02

Joint ci ratio: 8.695190e-02	ci left: 3.735907e-02	ci right 4.077471e-02	k: 1952	n:50000
Cons ci ratio: 2.251579e-02	ci left: 3.731484e-01	ci right 3.816658e-01	k: 18870	n:50000
KS ci ratio: 1.553129e-01	ci left: 1.160224e-02	ci right 1.357496e-02	k: 628	n:50000
SCAI   50000 perm   13 sec   (3801 perm/sec)   p_kst 1.256000e-02   p_cons 3.774000e-01   p_joint 3.904000e-02

Joint ci ratio: 8.053819e-02	ci left: 3.645150e-02	ci right 3.952673e-02	k: 2278	n:60000
Cons ci ratio: 2.050321e-02	ci left: 3.746833e-01	ci right 3.824618e-01	k: 22714	n:60000
KS ci ratio: 1.435043e-01	ci left: 1.140123e-02	ci right 1.317975e-02	k: 736	n:60000
SCAI   60000 perm   16 sec   (3871 perm/sec)   p_kst 1.226667e-02   p_cons 3.785667e-01   p_joint 3.796667e-02

Joint ci ratio: 8.217324e-02	ci left: 3.019039e-02	ci right 3.279149e-02	k: 2203	n:70000
Cons ci ratio: 1.943028e-02	ci left: 3.640837e-01	ci right 3.712416e-01	k: 25736	n:70000
KS ci ratio: 1.329246e-01	ci left: 1.145516e-02	ci right 1.309993e-02	k: 858	n:70000
SCAI   70000 perm   18 sec   (3914 perm/sec)   p_kst 1.225714e-02   p_cons 3.676571e-01   p_joint 3.147143e-02

Joint ci ratio: 7.830370e-02	ci left: 2.918432e-02	ci right 3.157490e-02	k: 2429	n:80000
Cons ci ratio: 1.814789e-02	ci left: 3.650185e-01	ci right 3.717160e-01	k: 29469	n:80000
KS ci ratio: 1.254251e-01	ci left: 1.130541e-02	ci right 1.283028e-02	k: 964	n:80000
SCAI   80000 perm   20 sec   (3921 perm/sec)   p_kst 1.205000e-02   p_cons 3.683625e-01   p_joint 3.036250e-02

Joint ci ratio: 7.393364e-02	ci left: 2.916791e-02	ci right 3.141805e-02	k: 2725	n:90000
Cons ci ratio: 1.631619e-02	ci left: 3.875437e-01	ci right 3.939300e-01	k: 35166	n:90000
KS ci ratio: 1.191228e-01	ci left: 1.118021e-02	ci right 1.260707e-02	k: 1069	n:90000
SCAI   90000 perm   23 sec   (3921 perm/sec)   p_kst 1.187778e-02   p_cons 3.907333e-01   p_joint 3.027778e-02

Joint ci ratio: 8.072000e-02	ci left: 2.210917e-02	ci right 2.397864e-02	k: 2303	n:100000
Cons ci ratio: 1.583467e-02	ci left: 3.769602e-01	ci right 3.829868e-01	k: 37997	n:100000
KS ci ratio: 1.131973e-01	ci left: 1.117878e-02	ci right 1.252975e-02	k: 1184	n:100000
SCAI   100000 perm   26 sec   (3904 perm/sec)   p_kst 1.184000e-02   p_cons 3.799700e-01   p_joint 2.303000e-02

Joint ci ratio: 7.090258e-02	ci left: 2.607691e-02	ci right 2.800268e-02	k: 2973	n:110000
Cons ci ratio: 1.439747e-02	ci left: 3.996908e-01	ci right 4.054961e-01	k: 44285	n:110000
KS ci ratio: 1.079924e-01	ci left: 1.119676e-02	ci right 1.248372e-02	k: 1301	n:110000
SCAI   110000 perm   28 sec   (3877 perm/sec)   p_kst 1.182727e-02   p_cons 4.025909e-01   p_joint 2.702727e-02

Joint ci ratio: 7.272091e-02	ci left: 2.278123e-02	ci right 2.450856e-02	k: 2836	n:120000
Cons ci ratio: 1.378954e-02	ci left: 3.996403e-01	ci right 4.051977e-01	k: 48290	n:120000
KS ci ratio: 1.034083e-01	ci left: 1.122104e-02	ci right 1.245272e-02	k: 1419	n:120000
SCAI   120000 perm   32 sec   (3808 perm/sec)   p_kst 1.182500e-02   p_cons 4.024167e-01   p_joint 2.363333e-02

Joint ci ratio: 6.448664e-02	ci left: 2.674645e-02	ci right 2.853624e-02	k: 3592	n:130000
Cons ci ratio: 1.323358e-02	ci left: 4.002936e-01	ci right 4.056338e-01	k: 52385	n:130000
KS ci ratio: 9.972388e-02	ci left: 1.116004e-02	ci right 1.233882e-02	k: 1526	n:130000
SCAI   130000 perm   34 sec   (3787 perm/sec)   p_kst 1.173846e-02   p_cons 4.029615e-01   p_joint 2.763077e-02

Outputting figure to mutsig2_images.part000000000152/SCAI.5_1966_130000_0.011738_0.40296_0.027631.png
                gene_name: SCAI
               theta_stop: 0.100 
                    nperm: 130000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.029 

Current progress: 25 percent done.
SALL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.446865e-02	ci left: 5.541131e-01	ci right 5.736497e-01	k: 5639	n:10000
Cons ci ratio: 3.056233e-02	ci left: 6.123115e-01	ci right 6.314175e-01	k: 6219	n:10000
KS ci ratio: 6.511594e-02	ci left: 2.572598e-01	ci right 2.746767e-01	k: 2659	n:10000
SALL3   10000 perm   2 sec   (4398 perm/sec)   p_kst 2.659000e-01   p_cons 6.219000e-01   p_joint 5.639000e-01

Outputting figure to mutsig2_images.part000000000152/SALL3.4_3915_10000_0.2659_0.6219_0.5639.png
                gene_name: SALL3
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 50 percent done.
SALL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.397830e-02	ci left: 7.188599e-01	ci right 7.364073e-01	k: 7277	n:10000
Cons ci ratio: 1.009287e-02	ci left: 9.329910e-01	ci right 9.425521e-01	k: 9379	n:10000
KS ci ratio: 4.814106e-02	ci left: 3.889845e-01	ci right 4.082746e-01	k: 3986	n:10000
SALL1   10000 perm   2 sec   (4791 perm/sec)   p_kst 3.986000e-01   p_cons 9.379000e-01   p_joint 7.277000e-01

Outputting figure to mutsig2_images.part000000000152/SALL1.3_3987_10000_0.3986_0.9379_0.7277.png
                gene_name: SALL1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 75 percent done.
SARDH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.081274e-02	ci left: 7.718513e-01	ci right 7.881853e-01	k: 7801	n:10000
KS ci ratio: 3.077061e-02	ci left: 6.090969e-01	ci right 6.282339e-01	k: 6187	n:10000
SARDH   10000 perm   2 sec   (4928 perm/sec)   p_kst 6.187000e-01   p_cons 7.801000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000152/SARDH.2_2837_10000_0.6187_0.7801_1.png
                gene_name: SARDH
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000152
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 152 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1724>
Subject: Job 9878148: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1724>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000153> was used as the working directory.
Started at Fri Oct  5 22:55:44 2012
Results reported at Fri Oct  5 22:57:01 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000153.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000153.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 153  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000153.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     71.99 sec.
    Max Memory :      2141 MB
    Max Swap   :      4715 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
153
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 153
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 153: processing genes 13783 - 13873
Calculating significance of each gene.
Using projection method.
13783	SCEL	1
13784	SCFD1	1
13785	SCFD2	1
13786	SCG2	1
13787	SCG3	1
13788	SCG5	1
13789	SCGB1A1	1
13790	SCGB1C1	1
13791	SCGB1D1	1
13792	SCGB1D2	1
13793	SCGB1D4	1
13794	SCGB2A1	1
13795	SCGB2A2	1
13796	SCGB3A1	1
13797	SCGB3A2	1
13798	SCGBL	1
13799	SCGN	1
In gene SCHIP1 the following bins exceed PROBCAP:
    PRAD-CH-5794	categ 6	N = 872     n = 1	mu =   2.02e-07
13800	SCHIP1	1.807171e-02
13801	SCIN	1
13802	SCLT1	1
13803	SCLY	1
13804	SCMH1	1
13805	SCML1	1
13806	SCML2	1
13807	SCML4	4.155404e-02
13808	SCN10A	1.019174e-01
13809	SCN11A	2.437017e-02
13810	SCN1A	1
13811	SCN1B	1
13812	SCN2A	1
13813	SCN2B	1
13814	SCN3A	4.644826e-01
13815	SCN3B	1
13816	SCN4A	4.995971e-01
13817	SCN4B	1
13818	SCN5A	3.587036e-02
13819	SCN7A	5.246078e-03
13820	SCN8A	1
13821	SCN9A	1
13822	SCNM1	1
13823	SCNN1A	1
13824	SCNN1B	1.286680e-01
13825	SCNN1D	1
13826	SCNN1G	1
13827	SCO1	1
13828	SCO2	1
13829	SCOC	1
13830	SCP2	1
13831	SCPEP1	1
13832	SCRG1	1
13833	SCRIB	1
13834	SCRN1	1
13835	SCRN2	1
13836	SCRN3	1
13837	SCRT1	1
13838	SCRT2	1
13839	SCTR	1
13840	SCUBE1	1
13841	SCUBE2	1
13842	SCUBE3	1
13843	SCYL1	1
13844	SCYL2	1
13845	SCYL3	1
13846	SDAD1	1.838145e-02
13847	SDC1	1
13848	SDC2	1
13849	SDC3	1
13850	SDC4	1
13851	SDCBP	1
13852	SDCBP2	1
13853	SDCCAG1	1
13854	SDCCAG3	1
13855	SDCCAG8	1
13856	SDF2	2.001870e-02
13857	SDF2L1	1.170884e-02
13858	SDF4	1
13859	SDHA	1
13860	SDHAF2	1
13861	SDHB	1
13862	SDHC	1
13863	SDHD	3.781018e-02
13864	SDK1	1
13865	SDK2	1
13866	SDPR	1
13867	SDR16C5	1
13868	SDR39U1	1
13869	SDR42E1	1
13870	SDR9C7	1
13871	SDS	1
13872	SDSL	1
13873	SEBOX	1
Done

Running MutSig 2:
Scatter job 153: processing genes 13783 - 13873
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SCN11A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.948178e-02	ci left: 2.937039e-01	ci right 3.118111e-01	k: 3027	n:10000
Cons ci ratio: 2.184117e-02	ci left: 7.546407e-01	ci right 7.714058e-01	k: 7631	n:10000
KS ci ratio: 8.795749e-02	ci left: 1.583626e-01	ci right 1.730327e-01	k: 1656	n:10000
SCN11A   10000 perm   2 sec   (5308 perm/sec)   p_kst 1.656000e-01   p_cons 7.631000e-01   p_joint 3.027000e-01

Outputting figure to mutsig2_images.part000000000153/SCN11A.3_5480_10000_0.1656_0.7631_0.3027.png
                gene_name: SCN11A
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 20 percent done.
SCN5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.862612e-02	ci left: 4.974503e-01	ci right 5.171454e-01	k: 5073	n:10000
KS ci ratio: 2.531941e-02	ci left: 6.965581e-01	ci right 7.145221e-01	k: 7056	n:10000
SCN5A   10000 perm   2 sec   (4955 perm/sec)   p_kst 7.056000e-01   p_cons 5.073000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000153/SCN5A.3_6255_10000_0.7056_0.5073_1.png
                gene_name: SCN5A
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
SCN7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.218526e-02	ci left: 7.488743e-01	ci right 7.657756e-01	k: 7574	n:10000
Cons ci ratio: 3.673940e-02	ci left: 5.224624e-01	ci right 5.421187e-01	k: 5323	n:10000
KS ci ratio: 2.031471e-02	ci left: 7.801599e-01	ci right 7.962719e-01	k: 7883	n:10000
SCN7A   10000 perm   2 sec   (5542 perm/sec)   p_kst 7.883000e-01   p_cons 5.323000e-01   p_joint 7.574000e-01

Outputting figure to mutsig2_images.part000000000153/SCN7A.3_5145_10000_0.7883_0.5323_0.7574.png
                gene_name: SCN7A
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 60 percent done.
SCN10A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.703343e-03	ci left: 9.590082e-01	ci right 9.665191e-01	k: 9629	n:10000
KS ci ratio: 2.591782e-02	ci left: 6.866768e-01	ci right 7.048091e-01	k: 6958	n:10000
SCN10A   10000 perm   2 sec   (5561 perm/sec)   p_kst 6.958000e-01   p_cons 9.629000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000153/SCN10A.2_5979_10000_0.6958_0.9629_1.png
                gene_name: SCN10A
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
SDAD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.454149e-02	ci left: 7.094718e-01	ci right 7.272009e-01	k: 7184	n:10000
KS ci ratio: 2.890169e-02	ci left: 6.383461e-01	ci right 6.571677e-01	k: 6478	n:10000
SDAD1   10000 perm   1 sec   (7090 perm/sec)   p_kst 6.478000e-01   p_cons 7.184000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000153/SDAD1.2_2152_10000_0.6478_0.7184_1.png
                gene_name: SDAD1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000153
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 153 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1727>
Subject: Job 9878151: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1727>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000154> was used as the working directory.
Started at Fri Oct  5 22:55:44 2012
Results reported at Fri Oct  5 22:56:55 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000154.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000154.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 154  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000154.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     60.96 sec.
    Max Memory :      1953 MB
    Max Swap   :      4681 MB

    Max Processes  :         7
    Max Threads    :        71

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
154
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 154
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 154: processing genes 13874 - 13963
Calculating significance of each gene.
Using projection method.
13874	SEC11A	1
13875	SEC11C	1
13876	SEC13	1
13877	SEC14L1	1
13878	SEC14L2	1
13879	SEC14L3	1
13880	SEC14L4	1
13881	SEC14L5	1
13882	SEC16A	1
13883	SEC16B	1
13884	SEC22A	1
13885	SEC22B	1
13886	SEC22C	1
13887	SEC23A	1
13888	SEC23B	1
13889	SEC23IP	1.699624e-01
13890	SEC24A	1
13891	SEC24B	2.781142e-01
13892	SEC24C	1
13893	SEC24D	1
13894	SEC31A	1
13895	SEC31B	1
13896	SEC61A1	9.358573e-02
13897	SEC61A2	3.375952e-02
13898	SEC61B	1
13899	SEC61G	1
13900	SEC62	1
13901	SEC63	6.884428e-02
13902	SECISBP2	1
13903	SECISBP2L	4.576178e-03
13904	SECTM1	1
13905	SEH1L	1
13906	SEL1L	1.641034e-01
13907	SEL1L2	1
13908	SEL1L3	1.874469e-01
13909	SELE	1
13910	SELENBP1	6.449449e-02
13911	SELK	1
13912	SELL	1
13913	SELM	1
13914	SELO	1.813445e-01
13915	SELP	1
13916	SELPLG	1
13917	SELS	1
13918	SELT	1
13919	SELV	1
13920	SEMA3A	1
13921	SEMA3B	1
13922	SEMA3C	1
13923	SEMA3D	1
13924	SEMA3E	1
13925	SEMA3F	1
13926	SEMA3G	1
13927	SEMA4A	1.252452e-01
13928	SEMA4B	1
13929	SEMA4C	1
13930	SEMA4D	1
13931	SEMA4F	1
13932	SEMA4G	1
13933	SEMA5A	1
13934	SEMA5B	1
13935	SEMA6A	1
13936	SEMA6B	1
13937	SEMA6C	1.930763e-01
13938	SEMA6D	1
13939	SEMA7A	1
13940	SEMG1	1
13941	SEMG2	1.278163e-01
13942	SENP1	1
13943	SENP2	1
13944	SENP3	1
13945	SENP5	1
13946	SENP6	1
13947	SENP7	2.991685e-01
13948	SENP8	1
13949	SEP15	1
13950	SEPHS1	1
13951	SEPHS2	1
13952	SEPN1	1
13953	SEPP1	1
13954	SEPSECS	5.014830e-02
13955	SEPT1	1
13956	SEPT10	1
13957	SEPT11	1
13958	SEPT12	1
13959	SEPT14	1
13960	SEPT2	1
13961	SEPT3	1
In gene SEPT4 the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 1570    n = 1	mu =   6.75e-07
13962	SEPT4	1.462470e-01
13963	SEPT5	1
Done

Running MutSig 2:
Scatter job 154: processing genes 13874 - 13963
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SECISBP2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.682802e-02	ci left: 5.212613e-01	ci right 5.409206e-01	k: 5311	n:10000
Cons ci ratio: 2.945480e-02	ci left: 6.295976e-01	ci right 6.485213e-01	k: 6391	n:10000
KS ci ratio: 5.176048e-02	ci left: 3.549581e-01	ci right 3.739210e-01	k: 3644	n:10000
SECISBP2L   10000 perm   2 sec   (5545 perm/sec)   p_kst 3.644000e-01   p_cons 6.391000e-01   p_joint 5.311000e-01

Outputting figure to mutsig2_images.part000000000154/SECISBP2L.3_3239_10000_0.3644_0.6391_0.5311.png
                gene_name: SECISBP2L
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 50 percent done.
SEL1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.383922e-02	ci left: 7.211824e-01	ci right 7.386835e-01	k: 7300	n:10000
Cons ci ratio: 1.837970e-02	ci left: 8.121240e-01	ci right 8.272893e-01	k: 8198	n:10000
KS ci ratio: 1.535246e-01	ci left: 5.648398e-02	ci right 6.597362e-02	k: 611	n:10000
SEL1L   10000 perm   2 sec   (6385 perm/sec)   p_kst 6.110000e-02   p_cons 8.198000e-01   p_joint 7.300000e-01

Joint ci ratio: 3.460076e-02	ci left: 3.840789e-01	ci right 3.976529e-01	k: 7817	n:20000
Cons ci ratio: 1.353180e-02	ci left: 8.020169e-01	ci right 8.129936e-01	k: 16151	n:20000
KS ci ratio: 1.063564e-01	ci left: 6.020772e-02	ci right 6.701982e-02	k: 1271	n:20000
SEL1L   20000 perm   3 sec   (5819 perm/sec)   p_kst 6.355000e-02   p_cons 8.075500e-01   p_joint 3.908500e-01

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 1.115332e-02	ci left: 8.000671e-01	ci right 8.090738e-01	k: 24138	n:30000
KS ci ratio: 8.698645e-02	ci left: 6.063560e-02	ci right 6.618266e-02	k: 1901	n:30000
SEL1L   30000 perm   5 sec   (5586 perm/sec)   p_kst 6.336667e-02   p_cons 8.046000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000154/SEL1L.2_2469_30000_0.063367_0.8046_1.png
                gene_name: SEL1L
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.061 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000154
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 154 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1707>
Subject: Job 9878153: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1707>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000155> was used as the working directory.
Started at Fri Oct  5 22:56:02 2012
Results reported at Sat Oct  6 02:00:14 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000155.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000155.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 155  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000155.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  11184.55 sec.
    Max Memory :      2016 MB
    Max Swap   :      4761 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
155
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 155
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 155: processing genes 13964 - 14054
Calculating significance of each gene.
Using projection method.
13964	SEPT6	1
13965	SEPT7	1
13966	SEPT8	1
13967	SEPT9	3.197893e-02
13968	SEPW1	1
13969	SEPX1	1
13970	SERAC1	1
13971	SERBP1	1
13972	SERF2	1
13973	SERGEF	1
13974	SERHL2	1
In gene SERINC1 the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 1402    n = 1	mu =   6.75e-07
13975	SERINC1	1.193507e-01
13976	SERINC2	1
13977	SERINC3	1
13978	SERINC4	1
13979	SERINC5	1
13980	SERP1	1
13981	SERP2	1
13982	SERPINA1	1
13983	SERPINA10	1
13984	SERPINA11	1
13985	SERPINA12	1
13986	SERPINA3	1
13987	SERPINA4	1
13988	SERPINA5	1
13989	SERPINA6	1
13990	SERPINA7	1
13991	SERPINA9	1
13992	SERPINB1	1
13993	SERPINB10	1
13994	SERPINB11	1
13995	SERPINB12	1
13996	SERPINB13	1
13997	SERPINB2	1.261954e-01
13998	SERPINB3	1
13999	SERPINB4	1
14000/18134 14000	SERPINB5	1
14001	SERPINB6	1
14002	SERPINB7	1
14003	SERPINB8	1
14004	SERPINB9	4.390461e-02
14005	SERPINC1	1
14006	SERPIND1	1
14007	SERPINE1	1
14008	SERPINE2	1
14009	SERPINE3	1
14010	SERPINF1	1
14011	SERPINF2	1
14012	SERPING1	1
14013	SERPINH1	1
14014	SERPINI1	1
14015	SERPINI2	1
14016	SERTAD1	1
14017	SERTAD2	1
14018	SERTAD3	1
14019	SERTAD4	1
14020	SESN1	1
14021	SESN2	1
14022	SESN3	1
14023	SESTD1	1
14024	SET	1
14025	SETBP1	1
14026	SETD1A	4.740448e-01
14027	SETD2	4.167132e-01
14028	SETD3	1
14029	SETD4	1
14030	SETD5	2.744326e-01
14031	SETD6	1
14032	SETD7	1
14033	SETD8	1
14034	SETDB1	1
14035	SETDB2	1
14036	SETMAR	1
14037	SETX	1
14038	SEZ6	1
14039	SEZ6L	9.320982e-02
14040	SEZ6L2	1
14041	SF1	1
14042	SF3A1	1
14043	SF3A2	1
14044	SF3A3	1
14045	SF3B1	3.534208e-01
14046	SF3B14	1
14047	SF3B2	1
14048	SF3B3	1
14049	SF3B4	1
14050	SF3B5	1
14051	SF4	1
In gene SFI1 the following bins exceed PROBCAP:
    PRAD-G9-6494	categ 6	N = 3673    n = 1	mu =   2.35e-07
14052	SFI1	1.438146e-02
14053	SFMBT1	1
14054	SFMBT2	1
Done

Running MutSig 2:
Scatter job 155: processing genes 13964 - 14054
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SETD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.289572e-01	ci left: 1.169777e-02	ci right 1.639161e-02	k: 139	n:10000
Cons ci ratio: 4.513363e-02	ci left: 4.201686e-01	ci right 4.396723e-01	k: 4299	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
SETD5   10000 perm   2 sec   (4910 perm/sec)   p_kst 1.000000e-04   p_cons 4.299000e-01   p_joint 1.390000e-02

Joint ci ratio: 3.970395e-01	ci left: 3.889694e-03	ci right 5.858508e-03	k: 96	n:20000
Cons ci ratio: 3.235061e-02	ci left: 4.164391e-01	ci right 4.301832e-01	k: 8466	n:20000
KS ci ratio: 2.262987e+00	ci left: 1.211069e-05	ci right 3.611872e-04	k: 2	n:20000
SETD5   20000 perm   7 sec   (3064 perm/sec)   p_kst 1.000000e-04   p_cons 4.233000e-01   p_joint 4.800000e-03

Joint ci ratio: 4.015396e-01	ci left: 2.532772e-03	ci right 3.833062e-03	k: 94	n:30000
Cons ci ratio: 2.625868e-02	ci left: 4.205947e-01	ci right 4.318195e-01	k: 12786	n:30000
KS ci ratio: 1.752902e+00	ci left: 3.633000e-05	ci right 3.413508e-04	k: 4	n:30000
SETD5   30000 perm   9 sec   (3307 perm/sec)   p_kst 1.333333e-04   p_cons 4.262000e-01   p_joint 3.133333e-03

Joint ci ratio: 3.618692e-01	ci left: 2.396900e-03	ci right 3.477268e-03	k: 116	n:40000
Cons ci ratio: 2.276429e-02	ci left: 4.208475e-01	ci right 4.305633e-01	k: 17028	n:40000
KS ci ratio: 1.600193e+00	ci left: 4.058837e-05	ci right 2.916840e-04	k: 5	n:40000
SETD5   40000 perm   12 sec   (3431 perm/sec)   p_kst 1.250000e-04   p_cons 4.257000e-01   p_joint 2.900000e-03

Joint ci ratio: 3.667192e-01	ci left: 1.862912e-03	ci right 2.716522e-03	k: 113	n:50000
Cons ci ratio: 2.029553e-02	ci left: 4.229383e-01	ci right 4.316301e-01	k: 21364	n:50000
KS ci ratio: 1.385805e+00	ci left: 5.628905e-05	ci right 2.884321e-04	k: 7	n:50000
SETD5   50000 perm   14 sec   (3494 perm/sec)   p_kst 1.400000e-04   p_cons 4.272800e-01   p_joint 2.260000e-03

Joint ci ratio: 3.997598e-01	ci left: 1.281194e-03	ci right 1.935202e-03	k: 95	n:60000
Cons ci ratio: 1.850827e-02	ci left: 4.238198e-01	ci right 4.317539e-01	k: 25667	n:60000
KS ci ratio: 1.385825e+00	ci left: 4.690730e-05	ci right 2.403631e-04	k: 7	n:60000
SETD5   60000 perm   17 sec   (3520 perm/sec)   p_kst 1.166667e-04   p_cons 4.277833e-01   p_joint 1.583333e-03

Joint ci ratio: 5.656052e-01	ci left: 4.933809e-04	ci right 8.927588e-04	k: 47	n:70000
Cons ci ratio: 1.717889e-02	ci left: 4.228750e-01	ci right 4.302168e-01	k: 29858	n:70000
KS ci ratio: 1.239515e+00	ci left: 5.879268e-05	ci right 2.440545e-04	k: 9	n:70000
SETD5   70000 perm   20 sec   (3527 perm/sec)   p_kst 1.285714e-04   p_cons 4.265429e-01   p_joint 6.714286e-04

Joint ci ratio: 5.236454e-01	ci left: 5.179598e-04	ci right 8.947830e-04	k: 55	n:80000
Cons ci ratio: 1.608645e-02	ci left: 4.225949e-01	ci right 4.294605e-01	k: 34082	n:80000
KS ci ratio: 1.181836e+00	ci left: 5.994393e-05	ci right 2.298674e-04	k: 10	n:80000
SETD5   80000 perm   23 sec   (3522 perm/sec)   p_kst 1.250000e-04   p_cons 4.260250e-01   p_joint 6.875000e-04

Joint ci ratio: 5.101704e-01	ci left: 4.893889e-04	ci right 8.330153e-04	k: 58	n:90000
Cons ci ratio: 1.516037e-02	ci left: 4.229882e-01	ci right 4.294610e-01	k: 38360	n:90000
KS ci ratio: 1.131525e+00	ci left: 6.101442e-05	ci right 2.186788e-04	k: 11	n:90000
SETD5   90000 perm   26 sec   (3515 perm/sec)   p_kst 1.222222e-04   p_cons 4.262222e-01   p_joint 6.444444e-04

Joint ci ratio: 4.787414e-01	ci left: 5.104796e-04	ci right 8.396064e-04	k: 66	n:100000
Cons ci ratio: 1.440987e-02	ci left: 4.222230e-01	ci right 4.283613e-01	k: 42529	n:100000
KS ci ratio: 1.181854e+00	ci left: 4.795490e-05	ci right 1.838958e-04	k: 10	n:100000
SETD5   100000 perm   29 sec   (3499 perm/sec)   p_kst 1.000000e-04   p_cons 4.252900e-01   p_joint 6.600000e-04

Joint ci ratio: 4.436932e-01	ci left: 5.524673e-04	ci right 8.748034e-04	k: 77	n:110000
Cons ci ratio: 1.373569e-02	ci left: 4.224939e-01	ci right 4.283464e-01	k: 46796	n:110000
KS ci ratio: 1.047593e+00	ci left: 6.292829e-05	ci right 2.020860e-04	k: 13	n:110000
SETD5   110000 perm   32 sec   (3479 perm/sec)   p_kst 1.181818e-04   p_cons 4.254182e-01   p_joint 7.000000e-04

Joint ci ratio: 4.650788e-01	ci left: 4.547643e-04	ci right 7.369499e-04	k: 70	n:120000
Cons ci ratio: 1.316377e-02	ci left: 4.221424e-01	ci right 4.277445e-01	k: 50993	n:120000
KS ci ratio: 1.047599e+00	ci left: 5.768416e-05	ci right 1.852462e-04	k: 13	n:120000
SETD5   120000 perm   35 sec   (3454 perm/sec)   p_kst 1.083333e-04   p_cons 4.249417e-01   p_joint 5.833333e-04

Joint ci ratio: 4.555593e-01	ci left: 4.401815e-04	ci right 7.059993e-04	k: 73	n:130000
Cons ci ratio: 1.264525e-02	ci left: 4.223337e-01	ci right 4.277158e-01	k: 55253	n:130000
KS ci ratio: 1.047604e+00	ci left: 5.324683e-05	ci right 1.709970e-04	k: 13	n:130000
SETD5   130000 perm   38 sec   (3427 perm/sec)   p_kst 1.000000e-04   p_cons 4.250231e-01   p_joint 5.615385e-04

Joint ci ratio: 3.958398e-01	ci left: 5.618953e-04	ci right 8.451626e-04	k: 97	n:140000
Cons ci ratio: 1.185738e-02	ci left: 4.358057e-01	ci right 4.410111e-01	k: 61377	n:140000
KS ci ratio: 9.799405e-01	ci left: 5.996824e-05	ci right 1.767097e-04	k: 15	n:140000
SETD5   140000 perm   41 sec   (3397 perm/sec)   p_kst 1.071429e-04   p_cons 4.384071e-01   p_joint 6.928571e-04

Joint ci ratio: 3.880046e-01	ci left: 5.484735e-04	ci right 8.181018e-04	k: 101	n:150000
Cons ci ratio: 1.146573e-02	ci left: 4.354471e-01	ci right 4.404753e-01	k: 65694	n:150000
KS ci ratio: 9.799445e-01	ci left: 5.597029e-05	ci right 1.649294e-04	k: 15	n:150000
SETD5   150000 perm   45 sec   (3365 perm/sec)   p_kst 1.000000e-04   p_cons 4.379600e-01   p_joint 6.733333e-04

Joint ci ratio: 4.108095e-01	ci left: 4.523399e-04	ci right 6.913634e-04	k: 90	n:160000
Cons ci ratio: 1.108963e-02	ci left: 4.360604e-01	ci right 4.409293e-01	k: 70159	n:160000
KS ci ratio: 9.799479e-01	ci left: 5.247208e-05	ci right 1.546217e-04	k: 15	n:160000
SETD5   160000 perm   48 sec   (3328 perm/sec)   p_kst 9.375000e-05   p_cons 4.384938e-01   p_joint 5.625000e-04

Joint ci ratio: 3.999692e-01	ci left: 4.521444e-04	ci right 6.830903e-04	k: 95	n:170000
Cons ci ratio: 1.076224e-02	ci left: 4.359630e-01	ci right 4.406862e-01	k: 74515	n:170000
KS ci ratio: 9.239012e-01	ci left: 5.825473e-05	ci right 1.601049e-04	k: 17	n:170000
SETD5   170000 perm   52 sec   (3274 perm/sec)   p_kst 1.000000e-04   p_cons 4.383235e-01   p_joint 5.588235e-04

Joint ci ratio: 4.495587e-01	ci left: 3.277484e-04	ci right 5.222677e-04	k: 75	n:180000
Cons ci ratio: 1.045540e-02	ci left: 4.362004e-01	ci right 4.407905e-01	k: 78929	n:180000
KS ci ratio: 9.239041e-01	ci left: 5.501830e-05	ci right 1.512104e-04	k: 17	n:180000
SETD5   180000 perm   56 sec   (3239 perm/sec)   p_kst 9.444444e-05   p_cons 4.384944e-01   p_joint 4.166667e-04

Joint ci ratio: 4.525521e-01	ci left: 3.058326e-04	ci right 4.889242e-04	k: 74	n:190000
Cons ci ratio: 1.018296e-02	ci left: 4.359516e-01	ci right 4.404188e-01	k: 83255	n:190000
KS ci ratio: 8.992623e-01	ci left: 5.614799e-05	ci right 1.497209e-04	k: 18	n:190000
SETD5   190000 perm   59 sec   (3203 perm/sec)   p_kst 9.473684e-05   p_cons 4.381842e-01   p_joint 3.894737e-04

Joint ci ratio: 4.495683e-01	ci left: 2.949724e-04	ci right 4.700434e-04	k: 75	n:200000
Cons ci ratio: 9.929341e-03	ci left: 4.357990e-01	ci right 4.401528e-01	k: 87595	n:200000
KS ci ratio: 8.764926e-01	ci left: 5.719714e-05	ci right 1.483503e-04	k: 19	n:200000
SETD5   200000 perm   63 sec   (3168 perm/sec)   p_kst 9.500000e-05   p_cons 4.379750e-01   p_joint 3.750000e-04

Joint ci ratio: 4.381848e-01	ci left: 2.978445e-04	ci right 4.688239e-04	k: 79	n:210000
Cons ci ratio: 9.689369e-03	ci left: 4.358860e-01	ci right 4.401347e-01	k: 91982	n:210000
KS ci ratio: 8.357010e-01	ci left: 6.190261e-05	ci right 1.528566e-04	k: 21	n:210000
SETD5   210000 perm   67 sec   (3134 perm/sec)   p_kst 1.000000e-04   p_cons 4.380095e-01   p_joint 3.761905e-04

Joint ci ratio: 4.177889e-01	ci left: 3.167546e-04	ci right 4.877692e-04	k: 87	n:220000
Cons ci ratio: 9.722258e-03	ci left: 4.228694e-01	ci right 4.270053e-01	k: 93486	n:220000
KS ci ratio: 8.173319e-01	ci left: 6.267049e-05	ci right 1.513973e-04	k: 22	n:220000
SETD5   220000 perm   71 sec   (3100 perm/sec)   p_kst 1.000000e-04   p_cons 4.249364e-01   p_joint 3.954545e-04

Joint ci ratio: 4.409577e-01	ci left: 2.680775e-04	ci right 4.232323e-04	k: 78	n:230000
Cons ci ratio: 9.507576e-03	ci left: 4.229655e-01	ci right 4.270103e-01	k: 97747	n:230000
KS ci ratio: 8.001232e-01	ci left: 6.339244e-05	ci right 1.500453e-04	k: 23	n:230000
SETD5   230000 perm   75 sec   (3066 perm/sec)   p_kst 1.000000e-04   p_cons 4.249870e-01   p_joint 3.391304e-04

Joint ci ratio: 4.302006e-01	ci left: 2.717466e-04	ci right 4.240809e-04	k: 82	n:240000
Cons ci ratio: 9.313896e-03	ci left: 4.226671e-01	ci right 4.266263e-01	k: 101915	n:240000
KS ci ratio: 7.687320e-01	ci left: 6.741227e-05	ci right 1.537667e-04	k: 25	n:240000
SETD5   240000 perm   79 sec   (3033 perm/sec)   p_kst 1.041667e-04   p_cons 4.246458e-01   p_joint 3.416667e-04

Joint ci ratio: 4.276343e-01	ci left: 2.644446e-04	ci right 4.115476e-04	k: 83	n:250000
Cons ci ratio: 9.129565e-03	ci left: 4.225014e-01	ci right 4.263803e-01	k: 106110	n:250000
KS ci ratio: 7.543621e-01	ci left: 6.793734e-05	ci right 1.523804e-04	k: 26	n:250000
SETD5   250000 perm   83 sec   (3000 perm/sec)   p_kst 1.040000e-04   p_cons 4.244400e-01   p_joint 3.320000e-04

Joint ci ratio: 4.251134e-01	ci left: 2.577067e-04	ci right 3.999758e-04	k: 84	n:260000
Cons ci ratio: 8.948923e-03	ci left: 4.227221e-01	ci right 4.265258e-01	k: 110402	n:260000
KS ci ratio: 7.407691e-01	ci left: 6.843635e-05	ci right 1.510871e-04	k: 27	n:260000
SETD5   260000 perm   88 sec   (2968 perm/sec)   p_kst 1.038462e-04   p_cons 4.246231e-01   p_joint 3.230769e-04

Joint ci ratio: 4.651564e-01	ci left: 2.021107e-04	ci right 3.275473e-04	k: 70	n:270000
Cons ci ratio: 8.780858e-03	ci left: 4.228012e-01	ci right 4.265338e-01	k: 114660	n:270000
KS ci ratio: 7.407706e-01	ci left: 6.590163e-05	ci right 1.454914e-04	k: 27	n:270000
SETD5   270000 perm   92 sec   (2938 perm/sec)   p_kst 1.000000e-04   p_cons 4.246667e-01   p_joint 2.592593e-04

Joint ci ratio: 4.651586e-01	ci left: 1.948923e-04	ci right 3.158496e-04	k: 70	n:280000
Cons ci ratio: 8.624440e-03	ci left: 4.227325e-01	ci right 4.263976e-01	k: 118878	n:280000
KS ci ratio: 7.278867e-01	ci left: 6.645027e-05	ci right 1.445246e-04	k: 28	n:280000
SETD5   280000 perm   96 sec   (2909 perm/sec)   p_kst 1.000000e-04   p_cons 4.245643e-01   p_joint 2.500000e-04

Joint ci ratio: 5.717434e-01	ci left: 1.161325e-04	ci right 2.115722e-04	k: 46	n:290000
Cons ci ratio: 8.465455e-03	ci left: 4.232826e-01	ci right 4.268845e-01	k: 123274	n:290000
KS ci ratio: 7.278881e-01	ci left: 6.415885e-05	ci right 1.395411e-04	k: 28	n:290000
SETD5   290000 perm   101 sec   (2876 perm/sec)   p_kst 9.655172e-05   p_cons 4.250828e-01   p_joint 1.586207e-04

Joint ci ratio: 7.543691e-01	ci left: 5.661430e-05	ci right 1.269842e-04	k: 26	n:300000
Cons ci ratio: 8.320776e-03	ci left: 4.234533e-01	ci right 4.269948e-01	k: 127567	n:300000
KS ci ratio: 7.278893e-01	ci left: 6.202019e-05	ci right 1.348899e-04	k: 28	n:300000
SETD5   300000 perm   105 sec   (2847 perm/sec)   p_kst 9.333333e-05   p_cons 4.252233e-01   p_joint 8.666667e-05

Joint ci ratio: 7.543703e-01	ci left: 5.478801e-05	ci right 1.228880e-04	k: 26	n:310000
Cons ci ratio: 8.187645e-03	ci left: 4.233524e-01	ci right 4.268361e-01	k: 131779	n:310000
KS ci ratio: 7.156550e-01	ci left: 6.265169e-05	ci right 1.343483e-04	k: 29	n:310000
SETD5   310000 perm   110 sec   (2818 perm/sec)   p_kst 9.354839e-05   p_cons 4.250935e-01   p_joint 8.387097e-05

Joint ci ratio: 7.543713e-01	ci left: 5.307586e-05	ci right 1.190478e-04	k: 26	n:320000
Cons ci ratio: 8.060397e-03	ci left: 4.232770e-01	ci right 4.267056e-01	k: 135997	n:320000
KS ci ratio: 7.156561e-01	ci left: 6.069380e-05	ci right 1.301500e-04	k: 29	n:320000
SETD5   320000 perm   115 sec   (2785 perm/sec)   p_kst 9.062500e-05   p_cons 4.249906e-01   p_joint 8.125000e-05

Joint ci ratio: 4.409810e-01	ci left: 1.868400e-04	ci right 2.949839e-04	k: 78	n:330000
Cons ci ratio: 7.938606e-03	ci left: 4.232247e-01	ci right 4.266009e-01	k: 140221	n:330000
KS ci ratio: 6.444069e-01	ci left: 7.640706e-05	ci right 1.510246e-04	k: 36	n:330000
SETD5   330000 perm   120 sec   (2756 perm/sec)   p_kst 1.090909e-04   p_cons 4.249121e-01   p_joint 2.363636e-04

Joint ci ratio: 4.382171e-01	ci left: 1.839602e-04	ci right 2.895728e-04	k: 79	n:340000
Cons ci ratio: 7.819633e-03	ci left: 4.233346e-01	ci right 4.266608e-01	k: 144499	n:340000
KS ci ratio: 6.444080e-01	ci left: 7.415977e-05	ci right 1.465828e-04	k: 36	n:340000
SETD5   340000 perm   125 sec   (2728 perm/sec)   p_kst 1.058824e-04   p_cons 4.249971e-01   p_joint 2.323529e-04

Joint ci ratio: 4.276551e-01	ci left: 1.888873e-04	ci right 2.939659e-04	k: 83	n:350000
Cons ci ratio: 7.706258e-03	ci left: 4.234129e-01	ci right 4.266912e-01	k: 148768	n:350000
KS ci ratio: 6.276665e-01	ci left: 7.683271e-05	ci right 1.490198e-04	k: 38	n:350000
SETD5   350000 perm   130 sec   (2700 perm/sec)   p_kst 1.085714e-04   p_cons 4.250514e-01   p_joint 2.371429e-04

Joint ci ratio: 4.226534e-01	ci left: 1.886014e-04	ci right 2.919469e-04	k: 85	n:360000
Cons ci ratio: 7.601779e-03	ci left: 4.232234e-01	ci right 4.264556e-01	k: 152942	n:360000
KS ci ratio: 6.121654e-01	ci left: 7.938056e-05	ci right 1.512988e-04	k: 40	n:360000
SETD5   360000 perm   135 sec   (2673 perm/sec)   p_kst 1.111111e-04   p_cons 4.248389e-01   p_joint 2.361111e-04

Joint ci ratio: 2.710751e-01	ci left: 4.883734e-04	ci right 6.439461e-04	k: 208	n:370000
Cons ci ratio: 7.500772e-03	ci left: 4.230876e-01	ci right 4.262757e-01	k: 157132	n:370000
KS ci ratio: 6.048340e-01	ci left: 7.952089e-05	ci right 1.503244e-04	k: 41	n:370000
SETD5   370000 perm   140 sec   (2646 perm/sec)   p_kst 1.108108e-04   p_cons 4.246811e-01   p_joint 5.621622e-04

Joint ci ratio: 2.642095e-01	ci left: 5.025274e-04	ci right 6.578843e-04	k: 219	n:380000
Cons ci ratio: 7.202742e-03	ci left: 4.364506e-01	ci right 4.396082e-01	k: 166451	n:380000
KS ci ratio: 6.048349e-01	ci left: 7.742820e-05	ci right 1.463686e-04	k: 41	n:380000
SETD5   380000 perm   145 sec   (2619 perm/sec)   p_kst 1.078947e-04   p_cons 4.380289e-01   p_joint 5.763158e-04

Joint ci ratio: 2.624272e-01	ci left: 4.968265e-04	ci right 6.492147e-04	k: 222	n:390000
Cons ci ratio: 7.107552e-03	ci left: 4.366266e-01	ci right 4.397435e-01	k: 170892	n:390000
KS ci ratio: 5.977607e-01	ci left: 7.761621e-05	ci right 1.455660e-04	k: 42	n:390000
SETD5   390000 perm   150 sec   (2595 perm/sec)   p_kst 1.076923e-04   p_cons 4.381846e-01   p_joint 5.692308e-04

Joint ci ratio: 2.636146e-01	ci left: 4.797349e-04	ci right 6.276562e-04	k: 220	n:400000
Cons ci ratio: 7.018426e-03	ci left: 4.366266e-01	ci right 4.397043e-01	k: 175266	n:400000
KS ci ratio: 5.909290e-01	ci left: 7.779934e-05	ci right 1.447991e-04	k: 43	n:400000
SETD5   400000 perm   156 sec   (2571 perm/sec)   p_kst 1.075000e-04   p_cons 4.381650e-01   p_joint 5.500000e-04

Joint ci ratio: 2.691568e-01	ci left: 4.475475e-04	ci right 5.889355e-04	k: 211	n:410000
Cons ci ratio: 6.929927e-03	ci left: 4.368146e-01	ci right 4.398546e-01	k: 179717	n:410000
KS ci ratio: 5.909298e-01	ci left: 7.590177e-05	ci right 1.412675e-04	k: 43	n:410000
SETD5   410000 perm   161 sec   (2547 perm/sec)   p_kst 1.048780e-04   p_cons 4.383341e-01   p_joint 5.146341e-04

Joint ci ratio: 2.672730e-01	ci left: 4.435541e-04	ci right 5.825355e-04	k: 214	n:420000
Cons ci ratio: 6.845718e-03	ci left: 4.369200e-01	ci right 4.399237e-01	k: 184137	n:420000
KS ci ratio: 5.909306e-01	ci left: 7.409456e-05	ci right 1.379040e-04	k: 43	n:420000
SETD5   420000 perm   167 sec   (2522 perm/sec)   p_kst 1.023810e-04   p_cons 4.384214e-01   p_joint 5.095238e-04

Joint ci ratio: 2.799359e-01	ci left: 3.920806e-04	ci right 5.217822e-04	k: 195	n:430000
Cons ci ratio: 6.765911e-03	ci left: 4.369185e-01	ci right 4.398870e-01	k: 188513	n:430000
KS ci ratio: 5.717589e-01	ci left: 7.832145e-05	ci right 1.426894e-04	k: 46	n:430000
SETD5   430000 perm   172 sec   (2499 perm/sec)   p_kst 1.069767e-04   p_cons 4.384023e-01   p_joint 4.534884e-04

Joint ci ratio: 2.905093e-01	ci left: 3.536255e-04	ci right 4.758378e-04	k: 181	n:440000
Cons ci ratio: 6.689357e-03	ci left: 4.368786e-01	ci right 4.398131e-01	k: 192872	n:440000
KS ci ratio: 5.717596e-01	ci left: 7.654140e-05	ci right 1.394466e-04	k: 46	n:440000
SETD5   440000 perm   178 sec   (2474 perm/sec)   p_kst 1.045455e-04   p_cons 4.383455e-01   p_joint 4.113636e-04

Joint ci ratio: 2.858353e-01	ci left: 3.581371e-04	ci right 4.795578e-04	k: 187	n:450000
Cons ci ratio: 6.612926e-03	ci left: 4.370206e-01	ci right 4.399224e-01	k: 197312	n:450000
KS ci ratio: 5.599689e-01	ci left: 7.864859e-05	ci right 1.414221e-04	k: 48	n:450000
SETD5   450000 perm   184 sec   (2452 perm/sec)   p_kst 1.066667e-04   p_cons 4.384711e-01   p_joint 4.155556e-04

Joint ci ratio: 2.806572e-01	ci left: 3.644883e-04	ci right 4.854278e-04	k: 194	n:460000
Cons ci ratio: 6.539460e-03	ci left: 4.371262e-01	ci right 4.399963e-01	k: 201738	n:460000
KS ci ratio: 5.543410e-01	ci left: 7.880638e-05	ci right 1.408250e-04	k: 49	n:460000
SETD5   460000 perm   189 sec   (2430 perm/sec)   p_kst 1.065217e-04   p_cons 4.385609e-01   p_joint 4.217391e-04

Joint ci ratio: 2.778223e-01	ci left: 3.646480e-04	ci right 4.842046e-04	k: 198	n:470000
Cons ci ratio: 6.467690e-03	ci left: 4.372807e-01	ci right 4.401201e-01	k: 206189	n:470000
KS ci ratio: 5.543416e-01	ci left: 7.712962e-05	ci right 1.378287e-04	k: 49	n:470000
SETD5   470000 perm   195 sec   (2408 perm/sec)   p_kst 1.042553e-04   p_cons 4.387000e-01   p_joint 4.212766e-04

Joint ci ratio: 2.771278e-01	ci left: 3.589894e-04	ci right 4.763452e-04	k: 199	n:480000
Cons ci ratio: 6.396040e-03	ci left: 4.375975e-01	ci right 4.404074e-01	k: 210721	n:480000
KS ci ratio: 5.488801e-01	ci left: 7.731547e-05	ci right 1.373285e-04	k: 50	n:480000
SETD5   480000 perm   201 sec   (2387 perm/sec)   p_kst 1.041667e-04   p_cons 4.390021e-01   p_joint 4.145833e-04

Joint ci ratio: 2.757531e-01	ci left: 3.554617e-04	ci right 4.709878e-04	k: 201	n:490000
Cons ci ratio: 6.332669e-03	ci left: 4.374385e-01	ci right 4.402194e-01	k: 215026	n:490000
KS ci ratio: 5.435768e-01	ci left: 7.749656e-05	ci right 1.368459e-04	k: 51	n:490000
SETD5   490000 perm   207 sec   (2363 perm/sec)   p_kst 1.040816e-04   p_cons 4.388286e-01   p_joint 4.102041e-04

Joint ci ratio: 2.757542e-01	ci left: 3.483523e-04	ci right 4.615683e-04	k: 201	n:500000
Cons ci ratio: 6.271246e-03	ci left: 4.372779e-01	ci right 4.400308e-01	k: 219327	n:500000
KS ci ratio: 5.435774e-01	ci left: 7.594661e-05	ci right 1.341090e-04	k: 51	n:500000
SETD5   500000 perm   214 sec   (2342 perm/sec)   p_kst 1.020000e-04   p_cons 4.386540e-01   p_joint 4.020000e-04

Joint ci ratio: 2.717474e-01	ci left: 3.524793e-04	ci right 4.650880e-04	k: 207	n:510000
Cons ci ratio: 6.209225e-03	ci left: 4.373100e-01	ci right 4.400358e-01	k: 223723	n:510000
KS ci ratio: 5.384249e-01	ci left: 7.615010e-05	ci right 1.337059e-04	k: 52	n:510000
SETD5   510000 perm   220 sec   (2321 perm/sec)   p_kst 1.019608e-04   p_cons 4.386725e-01   p_joint 4.058824e-04

Joint ci ratio: 2.685387e-01	ci left: 3.546651e-04	ci right 4.664090e-04	k: 212	n:520000
Cons ci ratio: 6.147784e-03	ci left: 4.374391e-01	ci right 4.401385e-01	k: 228170	n:520000
KS ci ratio: 5.384255e-01	ci left: 7.468566e-05	ci right 1.311347e-04	k: 52	n:520000
SETD5   520000 perm   226 sec   (2300 perm/sec)   p_kst 1.000000e-04   p_cons 4.387885e-01   p_joint 4.076923e-04

Joint ci ratio: 2.672873e-01	ci left: 3.514933e-04	ci right 4.616354e-04	k: 214	n:530000
Cons ci ratio: 6.092588e-03	ci left: 4.372031e-01	ci right 4.398768e-01	k: 232426	n:530000
KS ci ratio: 5.384260e-01	ci left: 7.327648e-05	ci right 1.286605e-04	k: 52	n:530000
SETD5   530000 perm   232 sec   (2280 perm/sec)   p_kst 9.811321e-05   p_cons 4.385396e-01   p_joint 4.037736e-04

Joint ci ratio: 2.666686e-01	ci left: 3.467120e-04	ci right 4.550623e-04	k: 215	n:540000
Cons ci ratio: 6.035059e-03	ci left: 4.372852e-01	ci right 4.399340e-01	k: 236849	n:540000
KS ci ratio: 5.334173e-01	ci left: 7.352054e-05	ci right 1.283783e-04	k: 53	n:540000
SETD5   540000 perm   239 sec   (2260 perm/sec)   p_kst 9.814815e-05   p_cons 4.386093e-01   p_joint 3.981481e-04

Joint ci ratio: 2.630398e-01	ci left: 3.505931e-04	ci right 4.584200e-04	k: 221	n:550000
Cons ci ratio: 5.978555e-03	ci left: 4.374116e-01	ci right 4.400363e-01	k: 241298	n:550000
KS ci ratio: 5.238049e-01	ci left: 7.533455e-05	ci right 1.301618e-04	k: 55	n:550000
SETD5   550000 perm   246 sec   (2234 perm/sec)   p_kst 1.000000e-04   p_cons 4.387236e-01   p_joint 4.018182e-04

Joint ci ratio: 2.654440e-01	ci left: 3.376625e-04	ci right 4.426195e-04	k: 217	n:560000
Cons ci ratio: 5.925305e-03	ci left: 4.373926e-01	ci right 4.399937e-01	k: 245668	n:560000
KS ci ratio: 5.191898e-01	ci left: 7.553978e-05	ci right 1.298564e-04	k: 56	n:560000
SETD5   560000 perm   253 sec   (2214 perm/sec)   p_kst 1.000000e-04   p_cons 4.386929e-01   p_joint 3.875000e-04

Joint ci ratio: 2.685435e-01	ci left: 3.235534e-04	ci right 4.254970e-04	k: 212	n:570000
Cons ci ratio: 5.872616e-03	ci left: 4.374445e-01	ci right 4.400228e-01	k: 250078	n:570000
KS ci ratio: 5.018773e-01	ci left: 8.032781e-05	ci right 1.354925e-04	k: 60	n:570000
SETD5   570000 perm   260 sec   (2196 perm/sec)   p_kst 1.052632e-04   p_cons 4.387333e-01   p_joint 3.719298e-04

Joint ci ratio: 2.654458e-01	ci left: 3.260186e-04	ci right 4.273571e-04	k: 217	n:580000
Cons ci ratio: 5.818965e-03	ci left: 4.376930e-01	ci right 4.402490e-01	k: 254603	n:580000
KS ci ratio: 4.899725e-01	ci left: 8.346810e-05	ci right 1.389709e-04	k: 63	n:580000
SETD5   580000 perm   266 sec   (2178 perm/sec)   p_kst 1.086207e-04   p_cons 4.389707e-01   p_joint 3.741379e-04

Joint ci ratio: 2.642368e-01	ci left: 3.236576e-04	ci right 4.237282e-04	k: 219	n:590000
Cons ci ratio: 5.769178e-03	ci left: 4.377264e-01	ci right 4.402607e-01	k: 259006	n:590000
KS ci ratio: 4.861890e-01	ci left: 8.353961e-05	ci right 1.385175e-04	k: 64	n:590000
SETD5   590000 perm   273 sec   (2161 perm/sec)   p_kst 1.084746e-04   p_cons 4.389932e-01   p_joint 3.711864e-04

Joint ci ratio: 2.612841e-01	ci left: 3.260479e-04	ci right 4.255470e-04	k: 224	n:600000
Cons ci ratio: 5.723009e-03	ci left: 4.375555e-01	ci right 4.400684e-01	k: 263287	n:600000
KS ci ratio: 4.861894e-01	ci left: 8.214727e-05	ci right 1.362089e-04	k: 64	n:600000
SETD5   600000 perm   280 sec   (2143 perm/sec)   p_kst 1.066667e-04   p_cons 4.388117e-01   p_joint 3.733333e-04

Joint ci ratio: 2.607060e-01	ci left: 3.222349e-04	ci right 4.203173e-04	k: 225	n:610000
Cons ci ratio: 5.674774e-03	ci left: 4.376640e-01	ci right 4.401563e-01	k: 267735	n:610000
KS ci ratio: 4.861899e-01	ci left: 8.080058e-05	ci right 1.339760e-04	k: 64	n:610000
SETD5   610000 perm   287 sec   (2126 perm/sec)   p_kst 1.049180e-04   p_cons 4.389098e-01   p_joint 3.688525e-04

Joint ci ratio: 2.601317e-01	ci left: 3.185451e-04	ci right 4.152560e-04	k: 226	n:620000
Cons ci ratio: 5.628900e-03	ci left: 4.376675e-01	ci right 4.401396e-01	k: 272120	n:620000
KS ci ratio: 4.861903e-01	ci left: 7.949733e-05	ci right 1.318152e-04	k: 64	n:620000
SETD5   620000 perm   294 sec   (2109 perm/sec)   p_kst 1.032258e-04   p_cons 4.389032e-01   p_joint 3.645161e-04

Joint ci ratio: 2.595612e-01	ci left: 3.149726e-04	ci right 4.103553e-04	k: 227	n:630000
Cons ci ratio: 5.584264e-03	ci left: 4.376582e-01	ci right 4.401106e-01	k: 276497	n:630000
KS ci ratio: 4.824930e-01	ci left: 7.962885e-05	ci right 1.315026e-04	k: 65	n:630000
SETD5   630000 perm   301 sec   (2092 perm/sec)   p_kst 1.031746e-04   p_cons 4.388841e-01   p_joint 3.603175e-04

Joint ci ratio: 2.666770e-01	ci left: 2.925371e-04	ci right 3.839605e-04	k: 215	n:640000
Cons ci ratio: 5.539232e-03	ci left: 4.377774e-01	ci right 4.402106e-01	k: 280956	n:640000
KS ci ratio: 4.824934e-01	ci left: 7.838464e-05	ci right 1.294479e-04	k: 65	n:640000
SETD5   640000 perm   309 sec   (2074 perm/sec)   p_kst 1.015625e-04   p_cons 4.389938e-01   p_joint 3.359375e-04

Joint ci ratio: 2.648442e-01	ci left: 2.923445e-04	ci right 3.829756e-04	k: 218	n:650000
Cons ci ratio: 5.497401e-03	ci left: 4.377023e-01	ci right 4.401167e-01	k: 285291	n:650000
KS ci ratio: 4.824938e-01	ci left: 7.717871e-05	ci right 1.274565e-04	k: 65	n:650000
SETD5   650000 perm   316 sec   (2056 perm/sec)   p_kst 1.000000e-04   p_cons 4.389092e-01   p_joint 3.353846e-04

Joint ci ratio: 2.624581e-01	ci left: 2.935751e-04	ci right 3.836331e-04	k: 222	n:660000
Cons ci ratio: 5.455412e-03	ci left: 4.377280e-01	ci right 4.401240e-01	k: 289691	n:660000
KS ci ratio: 4.718875e-01	ci left: 8.000792e-05	ci right 1.306137e-04	k: 68	n:660000
SETD5   660000 perm   323 sec   (2040 perm/sec)   p_kst 1.030303e-04   p_cons 4.389258e-01   p_joint 3.363636e-04

Joint ci ratio: 2.612893e-01	ci left: 2.919825e-04	ci right 3.810879e-04	k: 224	n:670000
Cons ci ratio: 5.413945e-03	ci left: 4.377918e-01	ci right 4.401699e-01	k: 294117	n:670000
KS ci ratio: 4.718879e-01	ci left: 7.881376e-05	ci right 1.286642e-04	k: 68	n:670000
SETD5   670000 perm   331 sec   (2024 perm/sec)   p_kst 1.014925e-04   p_cons 4.389806e-01   p_joint 3.343284e-04

Joint ci ratio: 2.612899e-01	ci left: 2.876885e-04	ci right 3.754838e-04	k: 224	n:680000
Cons ci ratio: 5.374307e-03	ci left: 4.377715e-01	ci right 4.401320e-01	k: 298487	n:680000
KS ci ratio: 4.651938e-01	ci left: 8.024855e-05	ci right 1.300582e-04	k: 70	n:680000
SETD5   680000 perm   338 sec   (2009 perm/sec)   p_kst 1.029412e-04   p_cons 4.389515e-01   p_joint 3.294118e-04

Joint ci ratio: 2.589977e-01	ci left: 2.889383e-04	ci right 3.762162e-04	k: 228	n:690000
Cons ci ratio: 5.337003e-03	ci left: 4.376156e-01	ci right 4.399588e-01	k: 302763	n:690000
KS ci ratio: 4.651941e-01	ci left: 7.908551e-05	ci right 1.281733e-04	k: 70	n:690000
SETD5   690000 perm   346 sec   (1994 perm/sec)   p_kst 1.014493e-04   p_cons 4.387870e-01   p_joint 3.304348e-04

Joint ci ratio: 2.578743e-01	ci left: 2.874826e-04	ci right 3.738836e-04	k: 230	n:700000
Cons ci ratio: 5.298958e-03	ci left: 4.376042e-01	ci right 4.399306e-01	k: 307137	n:700000
KS ci ratio: 4.651945e-01	ci left: 7.795571e-05	ci right 1.263423e-04	k: 70	n:700000
SETD5   700000 perm   354 sec   (1979 perm/sec)   p_kst 1.000000e-04   p_cons 4.387671e-01   p_joint 3.285714e-04

Joint ci ratio: 2.578749e-01	ci left: 2.834335e-04	ci right 3.686177e-04	k: 230	n:710000
Cons ci ratio: 5.262166e-03	ci left: 4.375509e-01	ci right 4.398608e-01	k: 311481	n:710000
KS ci ratio: 4.651948e-01	ci left: 7.685773e-05	ci right 1.245629e-04	k: 70	n:710000
SETD5   710000 perm   361 sec   (1965 perm/sec)   p_kst 9.859155e-05   p_cons 4.387056e-01   p_joint 3.239437e-04

Joint ci ratio: 2.551283e-01	ci left: 2.859950e-04	ci right 3.708879e-04	k: 235	n:720000
Cons ci ratio: 5.225836e-03	ci left: 4.375270e-01	ci right 4.398208e-01	k: 315845	n:720000
KS ci ratio: 4.587777e-01	ci left: 7.824464e-05	ci right 1.259318e-04	k: 72	n:720000
SETD5   720000 perm   369 sec   (1950 perm/sec)   p_kst 1.000000e-04   p_cons 4.386736e-01   p_joint 3.263889e-04

Joint ci ratio: 2.971388e-01	ci left: 2.029903e-04	ci right 2.750461e-04	k: 173	n:730000
Cons ci ratio: 5.190435e-03	ci left: 4.374859e-01	ci right 4.397639e-01	k: 320196	n:730000
KS ci ratio: 4.556673e-01	ci left: 7.838483e-05	ci right 1.257334e-04	k: 73	n:730000
SETD5   730000 perm   377 sec   (1936 perm/sec)   p_kst 1.000000e-04   p_cons 4.386247e-01   p_joint 2.369863e-04

Joint ci ratio: 2.937809e-01	ci left: 2.052521e-04	ci right 2.771340e-04	k: 177	n:740000
Cons ci ratio: 5.153778e-03	ci left: 4.376338e-01	ci right 4.398964e-01	k: 324686	n:740000
KS ci ratio: 4.526194e-01	ci left: 7.852230e-05	ci right 1.255392e-04	k: 74	n:740000
SETD5   740000 perm   385 sec   (1922 perm/sec)   p_kst 1.000000e-04   p_cons 4.387649e-01   p_joint 2.391892e-04

Joint ci ratio: 2.744174e-01	ci left: 2.347156e-04	ci right 3.105654e-04	k: 203	n:750000
Cons ci ratio: 5.259735e-03	ci left: 4.243647e-01	ci right 4.266039e-01	k: 319113	n:750000
KS ci ratio: 4.496318e-01	ci left: 7.865713e-05	ci right 1.253493e-04	k: 75	n:750000
SETD5   750000 perm   393 sec   (1908 perm/sec)   p_kst 1.000000e-04   p_cons 4.254840e-01   p_joint 2.706667e-04

Joint ci ratio: 2.744179e-01	ci left: 2.316272e-04	ci right 3.064791e-04	k: 203	n:760000
Cons ci ratio: 5.224846e-03	ci left: 4.243881e-01	ci right 4.266125e-01	k: 323380	n:760000
KS ci ratio: 4.496321e-01	ci left: 7.762216e-05	ci right 1.237000e-04	k: 75	n:760000
SETD5   760000 perm   401 sec   (1894 perm/sec)   p_kst 9.868421e-05   p_cons 4.255000e-01   p_joint 2.671053e-04

Joint ci ratio: 2.858603e-01	ci left: 2.092985e-04	ci right 2.802648e-04	k: 187	n:770000
Cons ci ratio: 5.190339e-03	ci left: 4.244394e-01	ci right 4.266494e-01	k: 327669	n:770000
KS ci ratio: 4.496324e-01	ci left: 7.661407e-05	ci right 1.220935e-04	k: 75	n:770000
SETD5   770000 perm   409 sec   (1881 perm/sec)   p_kst 9.740260e-05   p_cons 4.255442e-01   p_joint 2.428571e-04

Joint ci ratio: 2.851033e-01	ci left: 2.078054e-04	ci right 2.780453e-04	k: 188	n:780000
Cons ci ratio: 5.157061e-03	ci left: 4.244370e-01	ci right 4.266328e-01	k: 331917	n:780000
KS ci ratio: 4.467031e-01	ci left: 7.676915e-05	ci right 1.219541e-04	k: 76	n:780000
SETD5   780000 perm   418 sec   (1867 perm/sec)   p_kst 9.743590e-05   p_cons 4.255346e-01   p_joint 2.410256e-04

Joint ci ratio: 2.828671e-01	ci left: 2.087020e-04	ci right 2.785929e-04	k: 191	n:790000
Cons ci ratio: 5.123805e-03	ci left: 4.244929e-01	ci right 4.266747e-01	k: 336211	n:790000
KS ci ratio: 4.410121e-01	ci left: 7.804603e-05	ci right 1.232232e-04	k: 78	n:790000
SETD5   790000 perm   426 sec   (1853 perm/sec)   p_kst 9.873418e-05   p_cons 4.255835e-01   p_joint 2.417722e-04

Joint ci ratio: 2.881706e-01	ci left: 1.979695e-04	ci right 2.657359e-04	k: 184	n:800000
Cons ci ratio: 5.091717e-03	ci left: 4.244962e-01	ci right 4.266643e-01	k: 340464	n:800000
KS ci ratio: 4.410124e-01	ci left: 7.707044e-05	ci right 1.216829e-04	k: 78	n:800000
SETD5   800000 perm   435 sec   (1839 perm/sec)   p_kst 9.750000e-05   p_cons 4.255800e-01   p_joint 2.300000e-04

Joint ci ratio: 2.866255e-01	ci left: 1.978167e-04	ci right 2.651019e-04	k: 186	n:810000
Cons ci ratio: 5.060762e-03	ci left: 4.244476e-01	ci right 4.266023e-01	k: 344675	n:810000
KS ci ratio: 4.382474e-01	ci left: 7.721684e-05	ci right 1.215511e-04	k: 79	n:810000
SETD5   810000 perm   444 sec   (1826 perm/sec)   p_kst 9.753086e-05   p_cons 4.255247e-01   p_joint 2.296296e-04

Joint ci ratio: 2.851050e-01	ci left: 1.976684e-04	ci right 2.644824e-04	k: 188	n:820000
Cons ci ratio: 5.029624e-03	ci left: 4.244722e-01	ci right 4.266137e-01	k: 348945	n:820000
KS ci ratio: 4.328697e-01	ci left: 7.844672e-05	ci right 1.227737e-04	k: 81	n:820000
SETD5   820000 perm   452 sec   (1813 perm/sec)   p_kst 9.878049e-05   p_cons 4.255427e-01   p_joint 2.292683e-04

Joint ci ratio: 2.828687e-01	ci left: 1.986440e-04	ci right 2.651670e-04	k: 191	n:830000
Cons ci ratio: 5.000335e-03	ci left: 4.243710e-01	ci right 4.264994e-01	k: 353111	n:830000
KS ci ratio: 4.276852e-01	ci left: 7.965020e-05	ci right 1.239636e-04	k: 83	n:830000
SETD5   830000 perm   461 sec   (1801 perm/sec)   p_kst 1.000000e-04   p_cons 4.254349e-01   p_joint 2.301205e-04

Joint ci ratio: 2.905381e-01	ci left: 1.852300e-04	ci right 2.492522e-04	k: 181	n:840000
Cons ci ratio: 4.970777e-03	ci left: 4.243483e-01	ci right 4.264641e-01	k: 357341	n:840000
KS ci ratio: 4.251619e-01	ci left: 7.976468e-05	ci right 1.238053e-04	k: 84	n:840000
SETD5   840000 perm   470 sec   (1788 perm/sec)   p_kst 1.000000e-04   p_cons 4.254060e-01   p_joint 2.154762e-04

Joint ci ratio: 2.889548e-01	ci left: 1.852328e-04	ci right 2.488433e-04	k: 183	n:850000
Cons ci ratio: 4.941356e-03	ci left: 4.243639e-01	ci right 4.264672e-01	k: 361603	n:850000
KS ci ratio: 4.251622e-01	ci left: 7.882626e-05	ci right 1.223488e-04	k: 84	n:850000
SETD5   850000 perm   479 sec   (1776 perm/sec)   p_kst 9.882353e-05   p_cons 4.254153e-01   p_joint 2.152941e-04

Joint ci ratio: 2.873971e-01	ci left: 1.852364e-04	ci right 2.484430e-04	k: 185	n:860000
Cons ci ratio: 4.912487e-03	ci left: 4.243757e-01	ci right 4.264667e-01	k: 365862	n:860000
KS ci ratio: 4.251624e-01	ci left: 7.790967e-05	ci right 1.209262e-04	k: 84	n:860000
SETD5   860000 perm   488 sec   (1764 perm/sec)   p_kst 9.767442e-05   p_cons 4.254209e-01   p_joint 2.151163e-04

Joint ci ratio: 2.889555e-01	ci left: 1.809745e-04	ci right 2.431229e-04	k: 183	n:870000
Cons ci ratio: 4.883762e-03	ci left: 4.244228e-01	ci right 4.265018e-01	k: 370152	n:870000
KS ci ratio: 4.226833e-01	ci left: 7.804093e-05	ci right 1.208076e-04	k: 85	n:870000
SETD5   870000 perm   497 sec   (1752 perm/sec)   p_kst 9.770115e-05   p_cons 4.254621e-01   p_joint 2.103448e-04

Joint ci ratio: 1.992209e-01	ci left: 3.959725e-04	ci right 4.846426e-04	k: 386	n:880000
Cons ci ratio: 4.856223e-03	ci left: 4.243997e-01	ci right 4.264667e-01	k: 374381	n:880000
KS ci ratio: 4.154979e-01	ci left: 8.020367e-05	ci right 1.232014e-04	k: 88	n:880000
SETD5   880000 perm   506 sec   (1740 perm/sec)   p_kst 1.000000e-04   p_cons 4.254330e-01   p_joint 4.386364e-04

Joint ci ratio: 1.974429e-01	ci left: 3.989980e-04	ci right 4.874523e-04	k: 393	n:890000
Cons ci ratio: 4.828635e-03	ci left: 4.244287e-01	ci right 4.264842e-01	k: 378656	n:890000
KS ci ratio: 4.131832e-01	ci left: 8.030896e-05	ci right 1.230572e-04	k: 89	n:890000
SETD5   890000 perm   515 sec   (1729 perm/sec)   p_kst 1.000000e-04   p_cons 4.254562e-01   p_joint 4.415730e-04

Joint ci ratio: 1.999989e-01	ci left: 3.840061e-04	ci right 4.703733e-04	k: 383	n:900000
Cons ci ratio: 4.801784e-03	ci left: 4.244294e-01	ci right 4.264734e-01	k: 382906	n:900000
KS ci ratio: 4.109067e-01	ci left: 8.041255e-05	ci right 1.229156e-04	k: 90	n:900000
SETD5   900000 perm   524 sec   (1716 perm/sec)   p_kst 1.000000e-04   p_cons 4.254511e-01   p_joint 4.255556e-04

Joint ci ratio: 1.982002e-01	ci left: 3.870952e-04	ci right 4.732796e-04	k: 390	n:910000
Cons ci ratio: 4.776074e-03	ci left: 4.243586e-01	ci right 4.263913e-01	k: 387091	n:910000
KS ci ratio: 4.021623e-01	ci left: 8.347503e-05	ci right 1.264075e-04	k: 94	n:910000
SETD5   910000 perm   534 sec   (1705 perm/sec)   p_kst 1.032967e-04   p_cons 4.253747e-01   p_joint 4.285714e-04

Joint ci ratio: 1.971942e-01	ci left: 3.870202e-04	ci right 4.726980e-04	k: 394	n:920000
Cons ci ratio: 4.749325e-03	ci left: 4.244383e-01	ci right 4.264600e-01	k: 391413	n:920000
KS ci ratio: 4.000622e-01	ci left: 8.354499e-05	ci right 1.262296e-04	k: 95	n:920000
SETD5   920000 perm   543 sec   (1694 perm/sec)   p_kst 1.032609e-04   p_cons 4.254489e-01   p_joint 4.282609e-04

Joint ci ratio: 1.959577e-01	ci left: 3.879705e-04	ci right 4.732558e-04	k: 399	n:930000
Cons ci ratio: 4.724392e-03	ci left: 4.243745e-01	ci right 4.263852e-01	k: 395603	n:930000
KS ci ratio: 3.979947e-01	ci left: 8.361401e-05	ci right 1.260549e-04	k: 96	n:930000
SETD5   930000 perm   552 sec   (1683 perm/sec)   p_kst 1.032258e-04   p_cons 4.253796e-01   p_joint 4.290323e-04

Joint ci ratio: 1.969458e-01	ci left: 3.797970e-04	ci right 4.637571e-04	k: 395	n:940000
Cons ci ratio: 4.699459e-03	ci left: 4.243524e-01	ci right 4.263523e-01	k: 399831	n:940000
KS ci ratio: 3.939539e-01	ci left: 8.464029e-05	ci right 1.270524e-04	k: 98	n:940000
SETD5   940000 perm   562 sec   (1672 perm/sec)   p_kst 1.042553e-04   p_cons 4.253521e-01   p_joint 4.202128e-04

Joint ci ratio: 1.954704e-01	ci left: 3.818047e-04	ci right 4.655010e-04	k: 401	n:950000
Cons ci ratio: 4.674776e-03	ci left: 4.243455e-01	ci right 4.263349e-01	k: 404073	n:950000
KS ci ratio: 3.939541e-01	ci left: 8.374933e-05	ci right 1.257150e-04	k: 98	n:950000
SETD5   950000 perm   572 sec   (1661 perm/sec)   p_kst 1.031579e-04   p_cons 4.253400e-01   p_joint 4.221053e-04

Joint ci ratio: 1.952280e-01	ci left: 3.788182e-04	ci right 4.617447e-04	k: 402	n:960000
Cons ci ratio: 4.649933e-03	ci left: 4.243961e-01	ci right 4.263752e-01	k: 408370	n:960000
KS ci ratio: 3.939543e-01	ci left: 8.287694e-05	ci right 1.244055e-04	k: 98	n:960000
SETD5   960000 perm   581 sec   (1651 perm/sec)   p_kst 1.020833e-04   p_cons 4.253854e-01   p_joint 4.187500e-04

Joint ci ratio: 1.937906e-01	ci left: 3.807972e-04	ci right 4.634708e-04	k: 408	n:970000
Cons ci ratio: 4.625871e-03	ci left: 4.244045e-01	ci right 4.263733e-01	k: 412627	n:970000
KS ci ratio: 3.900341e-01	ci left: 8.388117e-05	ci right 1.253870e-04	k: 100	n:970000
SETD5   970000 perm   591 sec   (1641 perm/sec)   p_kst 1.030928e-04   p_cons 4.253887e-01   p_joint 4.206186e-04

Joint ci ratio: 1.940284e-01	ci left: 3.759406e-04	ci right 4.576717e-04	k: 407	n:980000
Cons ci ratio: 4.601718e-03	ci left: 4.244617e-01	ci right 4.264204e-01	k: 416932	n:980000
KS ci ratio: 3.881174e-01	ci left: 8.394582e-05	ci right 1.252273e-04	k: 101	n:980000
SETD5   980000 perm   601 sec   (1630 perm/sec)   p_kst 1.030612e-04   p_cons 4.254408e-01   p_joint 4.153061e-04

Joint ci ratio: 1.921533e-01	ci left: 3.798335e-04	ci right 4.615197e-04	k: 415	n:990000
Cons ci ratio: 4.579340e-03	ci left: 4.243683e-01	ci right 4.263170e-01	k: 421089	n:990000
KS ci ratio: 3.843672e-01	ci left: 8.492192e-05	ci right 1.261779e-04	k: 103	n:990000
SETD5   990000 perm   612 sec   (1619 perm/sec)   p_kst 1.040404e-04   p_cons 4.253424e-01   p_joint 4.191919e-04

Joint ci ratio: 1.446367e-01	ci left: 6.809068e-04	ci right 7.880192e-04	k: 733	n:1000000
Cons ci ratio: 4.556530e-03	ci left: 4.243577e-01	ci right 4.262967e-01	k: 425327	n:1000000
KS ci ratio: 3.807237e-01	ci left: 8.588038e-05	ci right 1.271075e-04	k: 105	n:1000000
SETD5   1000000 perm   622 sec   (1608 perm/sec)   p_kst 1.050000e-04   p_cons 4.253270e-01   p_joint 7.330000e-04

Joint ci ratio: 1.528839e-01	ci left: 6.007611e-04	ci right 7.011484e-04	k: 656	n:1010000
Cons ci ratio: 4.533809e-03	ci left: 4.243741e-01	ci right 4.263035e-01	k: 429592	n:1010000
KS ci ratio: 3.789404e-01	ci left: 8.592564e-05	ci right 1.269332e-04	k: 106	n:1010000
SETD5   1010000 perm   633 sec   (1597 perm/sec)   p_kst 1.049505e-04   p_cons 4.253386e-01   p_joint 6.495050e-04

Joint ci ratio: 1.525363e-01	ci left: 5.977000e-04	ci right 6.973279e-04	k: 659	n:1020000
Cons ci ratio: 4.510954e-03	ci left: 4.244412e-01	ci right 4.263611e-01	k: 433909	n:1020000
KS ci ratio: 3.789406e-01	ci left: 8.508323e-05	ci right 1.256888e-04	k: 106	n:1020000
SETD5   1020000 perm   643 sec   (1587 perm/sec)   p_kst 1.039216e-04   p_cons 4.254010e-01   p_joint 6.460784e-04

Joint ci ratio: 1.638578e-01	ci left: 5.098361e-04	ci right 6.017482e-04	k: 571	n:1030000
Cons ci ratio: 4.488486e-03	ci left: 4.245022e-01	ci right 4.264128e-01	k: 438221	n:1030000
KS ci ratio: 3.771822e-01	ci left: 8.513579e-05	ci right 1.255312e-04	k: 107	n:1030000
SETD5   1030000 perm   653 sec   (1576 perm/sec)   p_kst 1.038835e-04   p_cons 4.254573e-01   p_joint 5.543689e-04

Joint ci ratio: 1.628642e-01	ci left: 5.113894e-04	ci right 6.029678e-04	k: 578	n:1040000
Cons ci ratio: 4.466649e-03	ci left: 4.245293e-01	ci right 4.264307e-01	k: 442499	n:1040000
KS ci ratio: 3.754480e-01	ci left: 8.518777e-05	ci right 1.253763e-04	k: 108	n:1040000
SETD5   1040000 perm   664 sec   (1567 perm/sec)   p_kst 1.038462e-04   p_cons 4.254798e-01   p_joint 5.557692e-04

Joint ci ratio: 1.699104e-01	ci left: 4.636192e-04	ci right 5.506032e-04	k: 531	n:1050000
Cons ci ratio: 4.445275e-03	ci left: 4.245398e-01	ci right 4.264321e-01	k: 446760	n:1050000
KS ci ratio: 3.754482e-01	ci left: 8.437645e-05	ci right 1.241822e-04	k: 108	n:1050000
SETD5   1050000 perm   674 sec   (1557 perm/sec)   p_kst 1.028571e-04   p_cons 4.254857e-01   p_joint 5.057143e-04

Joint ci ratio: 1.691176e-01	ci left: 4.637623e-04	ci right 5.503258e-04	k: 536	n:1060000
Cons ci ratio: 4.424315e-03	ci left: 4.245378e-01	ci right 4.264211e-01	k: 451008	n:1060000
KS ci ratio: 3.687428e-01	ci left: 8.700120e-05	ci right 1.271355e-04	k: 112	n:1060000
SETD5   1060000 perm   685 sec   (1548 perm/sec)   p_kst 1.056604e-04   p_cons 4.254792e-01   p_joint 5.056604e-04

Joint ci ratio: 1.686473e-01	ci left: 4.621133e-04	ci right 5.481047e-04	k: 539	n:1070000
Cons ci ratio: 4.403624e-03	ci left: 4.245386e-01	ci right 4.264132e-01	k: 455259	n:1070000
KS ci ratio: 3.687429e-01	ci left: 8.618810e-05	ci right 1.259474e-04	k: 112	n:1070000
SETD5   1070000 perm   696 sec   (1538 perm/sec)   p_kst 1.046729e-04   p_cons 4.254757e-01   p_joint 5.037383e-04

Joint ci ratio: 1.681809e-01	ci left: 4.604951e-04	ci right 5.459245e-04	k: 542	n:1080000
Cons ci ratio: 4.383263e-03	ci left: 4.245349e-01	ci right 4.264007e-01	k: 459505	n:1080000
KS ci ratio: 3.687431e-01	ci left: 8.539005e-05	ci right 1.247812e-04	k: 112	n:1080000
SETD5   1080000 perm   706 sec   (1529 perm/sec)   p_kst 1.037037e-04   p_cons 4.254676e-01   p_joint 5.018519e-04

Joint ci ratio: 1.678723e-01	ci left: 4.580281e-04	ci right 5.428280e-04	k: 544	n:1090000
Cons ci ratio: 4.364114e-03	ci left: 4.244267e-01	ci right 4.262838e-01	k: 463637	n:1090000
KS ci ratio: 3.687433e-01	ci left: 8.460665e-05	ci right 1.236364e-04	k: 112	n:1090000
SETD5   1090000 perm   717 sec   (1520 perm/sec)   p_kst 1.027523e-04   p_cons 4.253550e-01   p_joint 4.990826e-04

Joint ci ratio: 1.786975e-01	ci left: 3.982021e-04	ci right 4.771944e-04	k: 480	n:1100000
Cons ci ratio: 4.343978e-03	ci left: 4.244595e-01	ci right 4.263082e-01	k: 467922	n:1100000
KS ci ratio: 3.687435e-01	ci left: 8.383749e-05	ci right 1.225125e-04	k: 112	n:1100000
SETD5   1100000 perm   728 sec   (1511 perm/sec)   p_kst 1.018182e-04   p_cons 4.253836e-01   p_joint 4.363636e-04

Joint ci ratio: 1.785123e-01	ci left: 3.954753e-04	ci right 4.738365e-04	k: 481	n:1110000
Cons ci ratio: 4.324293e-03	ci left: 4.244719e-01	ci right 4.263123e-01	k: 472185	n:1110000
KS ci ratio: 3.687436e-01	ci left: 8.308219e-05	ci right 1.214088e-04	k: 112	n:1110000
SETD5   1110000 perm   739 sec   (1502 perm/sec)   p_kst 1.009009e-04   p_cons 4.253919e-01   p_joint 4.333333e-04

Joint ci ratio: 1.774113e-01	ci left: 3.970628e-04	ci right 4.752013e-04	k: 487	n:1120000
Cons ci ratio: 4.304952e-03	ci left: 4.244752e-01	ci right 4.263073e-01	k: 476438	n:1120000
KS ci ratio: 3.639439e-01	ci left: 8.477241e-05	ci right 1.232488e-04	k: 115	n:1120000
SETD5   1120000 perm   750 sec   (1493 perm/sec)   p_kst 1.026786e-04   p_cons 4.253911e-01   p_joint 4.348214e-04

Joint ci ratio: 1.759745e-01	ci left: 4.003156e-04	ci right 4.783884e-04	k: 495	n:1130000
Cons ci ratio: 4.285264e-03	ci left: 4.245475e-01	ci right 4.263715e-01	k: 480769	n:1130000
KS ci ratio: 3.578262e-01	ci left: 8.724113e-05	ci right 1.260175e-04	k: 119	n:1130000
SETD5   1130000 perm   761 sec   (1484 perm/sec)   p_kst 1.053097e-04   p_cons 4.254593e-01   p_joint 4.380531e-04

Joint ci ratio: 1.752692e-01	ci left: 4.001586e-04	ci right 4.778548e-04	k: 499	n:1140000
Cons ci ratio: 4.266309e-03	ci left: 4.245650e-01	ci right 4.263810e-01	k: 485039	n:1140000
KS ci ratio: 3.534353e-01	ci left: 8.887237e-05	ci right 1.277778e-04	k: 122	n:1140000
SETD5   1140000 perm   772 sec   (1476 perm/sec)   p_kst 1.070175e-04   p_cons 4.254728e-01   p_joint 4.377193e-04

Joint ci ratio: 1.740549e-01	ci left: 4.024999e-04	ci right 4.800523e-04	k: 506	n:1150000
Cons ci ratio: 4.248874e-03	ci left: 4.244362e-01	ci right 4.262442e-01	k: 489141	n:1150000
KS ci ratio: 3.520073e-01	ci left: 8.889209e-05	ci right 1.276130e-04	k: 123	n:1150000
SETD5   1150000 perm   784 sec   (1467 perm/sec)   p_kst 1.069565e-04   p_cons 4.253400e-01   p_joint 4.400000e-04

Joint ci ratio: 1.809721e-01	ci left: 3.677258e-04	ci right 4.417026e-04	k: 468	n:1160000
Cons ci ratio: 4.230844e-03	ci left: 4.244027e-01	ci right 4.262029e-01	k: 493351	n:1160000
KS ci ratio: 3.520074e-01	ci left: 8.812577e-05	ci right 1.265129e-04	k: 123	n:1160000
SETD5   1160000 perm   795 sec   (1459 perm/sec)   p_kst 1.060345e-04   p_cons 4.253026e-01   p_joint 4.034483e-04

Joint ci ratio: 1.805876e-01	ci left: 3.662148e-04	ci right 4.397141e-04	k: 470	n:1170000
Cons ci ratio: 4.212997e-03	ci left: 4.243749e-01	ci right 4.261674e-01	k: 497567	n:1170000
KS ci ratio: 3.505966e-01	ci left: 8.815185e-05	ci right 1.263614e-04	k: 124	n:1170000
SETD5   1170000 perm   806 sec   (1451 perm/sec)   p_kst 1.059829e-04   p_cons 4.252709e-01   p_joint 4.017094e-04

Joint ci ratio: 1.800153e-01	ci left: 3.655389e-04	ci right 4.386447e-04	k: 473	n:1180000
Cons ci ratio: 4.194771e-03	ci left: 4.244179e-01	ci right 4.262028e-01	k: 501866	n:1180000
KS ci ratio: 3.492026e-01	ci left: 8.817778e-05	ci right 1.262122e-04	k: 125	n:1180000
SETD5   1180000 perm   818 sec   (1442 perm/sec)   p_kst 1.059322e-04   p_cons 4.253102e-01   p_joint 4.008475e-04

Joint ci ratio: 1.829346e-01	ci left: 3.504344e-04	ci right 4.217820e-04	k: 458	n:1190000
Cons ci ratio: 4.176866e-03	ci left: 4.244501e-01	ci right 4.262275e-01	k: 506153	n:1190000
KS ci ratio: 3.478250e-01	ci left: 8.820357e-05	ci right 1.260652e-04	k: 126	n:1190000
SETD5   1190000 perm   830 sec   (1434 perm/sec)   p_kst 1.058824e-04   p_cons 4.253387e-01   p_joint 3.848739e-04

Joint ci ratio: 1.823397e-01	ci left: 3.498999e-04	ci right 4.208813e-04	k: 461	n:1200000
Cons ci ratio: 4.159542e-03	ci left: 4.244402e-01	ci right 4.262102e-01	k: 510390	n:1200000
KS ci ratio: 3.478252e-01	ci left: 8.746853e-05	ci right 1.250146e-04	k: 126	n:1200000
SETD5   1200000 perm   842 sec   (1426 perm/sec)   p_kst 1.050000e-04   p_cons 4.253250e-01   p_joint 3.841667e-04

Joint ci ratio: 1.811669e-01	ci left: 3.517412e-04	ci right 4.225869e-04	k: 467	n:1210000
Cons ci ratio: 4.142180e-03	ci left: 4.244602e-01	ci right 4.262228e-01	k: 514663	n:1210000
KS ci ratio: 3.451182e-01	ci left: 8.825473e-05	ci right 1.257776e-04	k: 128	n:1210000
SETD5   1210000 perm   853 sec   (1418 perm/sec)   p_kst 1.057851e-04   p_cons 4.253413e-01   p_joint 3.859504e-04

Joint ci ratio: 1.805891e-01	ci left: 3.512058e-04	ci right 4.216934e-04	k: 470	n:1220000
Cons ci ratio: 4.125607e-03	ci left: 4.244118e-01	ci right 4.261672e-01	k: 518853	n:1220000
KS ci ratio: 3.437883e-01	ci left: 8.828010e-05	ci right 1.256369e-04	k: 129	n:1220000
SETD5   1220000 perm   865 sec   (1411 perm/sec)   p_kst 1.057377e-04   p_cons 4.252893e-01   p_joint 3.852459e-04

Joint ci ratio: 1.785160e-01	ci left: 3.568917e-04	ci right 4.276094e-04	k: 481	n:1230000
Cons ci ratio: 4.108638e-03	ci left: 4.244350e-01	ci right 4.261832e-01	k: 523130	n:1230000
KS ci ratio: 3.386178e-01	ci left: 9.053582e-05	ci right 1.281451e-04	k: 133	n:1230000
SETD5   1230000 perm   877 sec   (1403 perm/sec)   p_kst 1.081301e-04   p_cons 4.253089e-01   p_joint 3.910569e-04

Joint ci ratio: 1.809745e-01	ci left: 3.440011e-04	ci right 4.132062e-04	k: 468	n:1240000
Cons ci ratio: 4.092875e-03	ci left: 4.243385e-01	ci right 4.260796e-01	k: 527259	n:1240000
KS ci ratio: 3.348896e-01	ci left: 9.202050e-05	ci right 1.297348e-04	k: 136	n:1240000
SETD5   1240000 perm   888 sec   (1396 perm/sec)   p_kst 1.096774e-04   p_cons 4.252089e-01   p_joint 3.774194e-04

Joint ci ratio: 1.796386e-01	ci left: 3.465964e-04	ci right 4.157530e-04	k: 475	n:1250000
Cons ci ratio: 4.076398e-03	ci left: 4.243507e-01	ci right 4.260848e-01	k: 531522	n:1250000
KS ci ratio: 3.312818e-01	ci left: 9.348366e-05	ci right 1.312969e-04	k: 139	n:1250000
SETD5   1250000 perm   901 sec   (1388 perm/sec)   p_kst 1.112000e-04   p_cons 4.252176e-01   p_joint 3.800000e-04

Joint ci ratio: 1.787024e-01	ci left: 3.476360e-04	ci right 4.165994e-04	k: 480	n:1260000
Cons ci ratio: 4.060481e-03	ci left: 4.243191e-01	ci right 4.260463e-01	k: 535730	n:1260000
KS ci ratio: 3.289404e-01	ci left: 9.419750e-05	ci right 1.319732e-04	k: 141	n:1260000
SETD5   1260000 perm   913 sec   (1380 perm/sec)   p_kst 1.119048e-04   p_cons 4.251825e-01   p_joint 3.809524e-04

Joint ci ratio: 1.781478e-01	ci left: 3.471554e-04	ci right 4.157866e-04	k: 483	n:1270000
Cons ci ratio: 4.044410e-03	ci left: 4.243289e-01	ci right 4.260493e-01	k: 539990	n:1270000
KS ci ratio: 3.289406e-01	ci left: 9.345578e-05	ci right 1.309341e-04	k: 141	n:1270000
SETD5   1270000 perm   925 sec   (1373 perm/sec)   p_kst 1.110236e-04   p_cons 4.251890e-01   p_joint 3.803150e-04

Joint ci ratio: 1.783325e-01	ci left: 3.436968e-04	ci right 4.117223e-04	k: 482	n:1280000
Cons ci ratio: 4.028509e-03	ci left: 4.243410e-01	ci right 4.260547e-01	k: 544253	n:1280000
KS ci ratio: 3.277884e-01	ci left: 9.344251e-05	ci right 1.307566e-04	k: 142	n:1280000
SETD5   1280000 perm   937 sec   (1366 perm/sec)   p_kst 1.109375e-04   p_cons 4.251977e-01   p_joint 3.765625e-04

Joint ci ratio: 1.774164e-01	ci left: 3.447359e-04	ci right 4.125790e-04	k: 487	n:1290000
Cons ci ratio: 4.012705e-03	ci left: 4.243637e-01	ci right 4.260707e-01	k: 548530	n:1290000
KS ci ratio: 3.266483e-01	ci left: 9.342967e-05	ci right 1.305816e-04	k: 143	n:1290000
SETD5   1290000 perm   950 sec   (1358 perm/sec)   p_kst 1.108527e-04   p_cons 4.252171e-01   p_joint 3.775194e-04

Joint ci ratio: 1.766937e-01	ci left: 3.450246e-04	ci right 4.126185e-04	k: 491	n:1300000
Cons ci ratio: 3.997362e-03	ci left: 4.243523e-01	ci right 4.260527e-01	k: 552763	n:1300000
KS ci ratio: 3.255200e-01	ci left: 9.341725e-05	ci right 1.304091e-04	k: 144	n:1300000
SETD5   1300000 perm   962 sec   (1351 perm/sec)   p_kst 1.107692e-04   p_cons 4.252023e-01   p_joint 3.776923e-04

Joint ci ratio: 1.346492e-01	ci left: 6.030244e-04	ci right 6.908108e-04	k: 846	n:1310000
Cons ci ratio: 3.982343e-03	ci left: 4.243227e-01	ci right 4.260166e-01	k: 556972	n:1310000
KS ci ratio: 3.211205e-01	ci left: 9.550982e-05	ci right 1.327140e-04	k: 148	n:1310000
SETD5   1310000 perm   975 sec   (1344 perm/sec)   p_kst 1.129771e-04   p_cons 4.251695e-01   p_joint 6.458015e-04

Joint ci ratio: 1.340177e-01	ci left: 6.043130e-04	ci right 6.918415e-04	k: 854	n:1320000
Cons ci ratio: 3.967659e-03	ci left: 4.242731e-01	ci right 4.259606e-01	k: 561154	n:1320000
KS ci ratio: 3.158641e-01	ci left: 9.827142e-05	ci right 1.357982e-04	k: 153	n:1320000
SETD5   1320000 perm   987 sec   (1337 perm/sec)   p_kst 1.159091e-04   p_cons 4.251167e-01   p_joint 6.469697e-04

Joint ci ratio: 1.335499e-01	ci left: 6.041295e-04	ci right 6.913019e-04	k: 860	n:1330000
Cons ci ratio: 3.952849e-03	ci left: 4.242596e-01	ci right 4.259407e-01	k: 565383	n:1330000
KS ci ratio: 3.138327e-01	ci left: 9.891749e-05	ci right 1.363993e-04	k: 155	n:1330000
SETD5   1330000 perm   1000 sec   (1330 perm/sec)   p_kst 1.165414e-04   p_cons 4.251000e-01   p_joint 6.466165e-04

Joint ci ratio: 1.163578e-01	ci left: 7.970188e-04	ci right 8.962038e-04	k: 1133	n:1340000
Cons ci ratio: 3.938343e-03	ci left: 4.242292e-01	ci right 4.259040e-01	k: 569589	n:1340000
KS ci ratio: 3.118400e-01	ci left: 9.955468e-05	ci right 1.369907e-04	k: 157	n:1340000
SETD5   1340000 perm   1012 sec   (1324 perm/sec)   p_kst 1.171642e-04   p_cons 4.250664e-01   p_joint 8.455224e-04

Joint ci ratio: 1.159496e-01	ci left: 7.968687e-04	ci right 8.956633e-04	k: 1141	n:1350000
Cons ci ratio: 3.924066e-03	ci left: 4.241903e-01	ci right 4.258589e-01	k: 573783	n:1350000
KS ci ratio: 3.098847e-01	ci left: 1.001832e-04	ci right 1.375727e-04	k: 159	n:1350000
SETD5   1350000 perm   1026 sec   (1316 perm/sec)   p_kst 1.177778e-04   p_cons 4.250244e-01   p_joint 8.451852e-04

Joint ci ratio: 1.155959e-01	ci left: 7.960074e-04	ci right 8.943736e-04	k: 1148	n:1360000
Cons ci ratio: 3.909750e-03	ci left: 4.241763e-01	ci right 4.258387e-01	k: 578010	n:1360000
KS ci ratio: 3.079658e-01	ci left: 1.008031e-04	ci right 1.381453e-04	k: 161	n:1360000
SETD5   1360000 perm   1038 sec   (1310 perm/sec)   p_kst 1.183824e-04   p_cons 4.250074e-01   p_joint 8.441176e-04

Joint ci ratio: 1.151956e-01	ci left: 7.958680e-04	ci right 8.938533e-04	k: 1156	n:1370000
Cons ci ratio: 3.895036e-03	ci left: 4.242319e-01	ci right 4.258882e-01	k: 582332	n:1370000
KS ci ratio: 3.060821e-01	ci left: 1.014148e-04	ci right 1.387089e-04	k: 163	n:1370000
SETD5   1370000 perm   1052 sec   (1303 perm/sec)   p_kst 1.189781e-04   p_cons 4.250599e-01   p_joint 8.437956e-04

Joint ci ratio: 1.162567e-01	ci left: 7.753234e-04	ci right 8.717189e-04	k: 1135	n:1380000
Cons ci ratio: 3.881201e-03	ci left: 4.241968e-01	ci right 4.258470e-01	k: 586530	n:1380000
KS ci ratio: 3.051532e-01	ci left: 1.013489e-04	ci right 1.384838e-04	k: 164	n:1380000
SETD5   1380000 perm   1065 sec   (1296 perm/sec)   p_kst 1.188406e-04   p_cons 4.250217e-01   p_joint 8.224638e-04

Joint ci ratio: 1.155969e-01	ci left: 7.788270e-04	ci right 8.750711e-04	k: 1148	n:1390000
Cons ci ratio: 3.867455e-03	ci left: 4.241694e-01	ci right 4.258137e-01	k: 590738	n:1390000
KS ci ratio: 3.024162e-01	ci left: 1.026136e-04	ci right 1.398098e-04	k: 167	n:1390000
SETD5   1390000 perm   1078 sec   (1289 perm/sec)   p_kst 1.201439e-04   p_cons 4.249914e-01   p_joint 8.258993e-04

Joint ci ratio: 1.153964e-01	ci left: 7.760385e-04	ci right 8.717603e-04	k: 1152	n:1400000
Cons ci ratio: 3.853848e-03	ci left: 4.241431e-01	ci right 4.257815e-01	k: 594947	n:1400000
KS ci ratio: 3.024163e-01	ci left: 1.018806e-04	ci right 1.388112e-04	k: 167	n:1400000
SETD5   1400000 perm   1091 sec   (1283 perm/sec)   p_kst 1.192857e-04   p_cons 4.249621e-01   p_joint 8.228571e-04

Joint ci ratio: 1.149486e-01	ci left: 7.767338e-04	ci right 8.721444e-04	k: 1161	n:1410000
Cons ci ratio: 3.840373e-03	ci left: 4.241186e-01	ci right 4.257512e-01	k: 599158	n:1410000
KS ci ratio: 3.015203e-01	ci left: 1.018136e-04	ci right 1.385895e-04	k: 168	n:1410000
SETD5   1410000 perm   1105 sec   (1276 perm/sec)   p_kst 1.191489e-04   p_cons 4.249348e-01   p_joint 8.234043e-04

Joint ci ratio: 1.146040e-01	ci left: 7.760518e-04	ci right 8.710736e-04	k: 1168	n:1420000
Cons ci ratio: 3.827485e-03	ci left: 4.240375e-01	ci right 4.256642e-01	k: 603288	n:1420000
KS ci ratio: 3.015204e-01	ci left: 1.010966e-04	ci right 1.376135e-04	k: 168	n:1420000
SETD5   1420000 perm   1118 sec   (1270 perm/sec)   p_kst 1.183099e-04   p_cons 4.248507e-01   p_joint 8.225352e-04

Joint ci ratio: 1.141654e-01	ci left: 7.767386e-04	ci right 8.714558e-04	k: 1177	n:1430000
Cons ci ratio: 3.813836e-03	ci left: 4.240714e-01	ci right 4.256925e-01	k: 607581	n:1430000
KS ci ratio: 2.997519e-01	ci left: 1.016827e-04	ci right 1.381549e-04	k: 170	n:1430000
SETD5   1430000 perm   1131 sec   (1264 perm/sec)   p_kst 1.188811e-04   p_cons 4.248818e-01   p_joint 8.230769e-04

Joint ci ratio: 1.148014e-01	ci left: 7.625750e-04	ci right 8.561182e-04	k: 1164	n:1440000
Cons ci ratio: 3.800499e-03	ci left: 4.240834e-01	ci right 4.256989e-01	k: 611843	n:1440000
KS ci ratio: 2.997520e-01	ci left: 1.009766e-04	ci right 1.371955e-04	k: 170	n:1440000
SETD5   1440000 perm   1145 sec   (1258 perm/sec)   p_kst 1.180556e-04   p_cons 4.248910e-01   p_joint 8.083333e-04

Joint ci ratio: 1.144581e-01	ci left: 7.620050e-04	ci right 8.551799e-04	k: 1171	n:1450000
Cons ci ratio: 3.787590e-03	ci left: 4.240580e-01	ci right 4.256678e-01	k: 616051	n:1450000
KS ci ratio: 2.988794e-01	ci left: 1.009181e-04	ci right 1.369907e-04	k: 171	n:1450000
SETD5   1450000 perm   1158 sec   (1252 perm/sec)   p_kst 1.179310e-04   p_cons 4.248628e-01   p_joint 8.075862e-04

Joint ci ratio: 1.189624e-01	ci left: 6.989343e-04	ci right 7.879970e-04	k: 1084	n:1460000
Cons ci ratio: 3.774541e-03	ci left: 4.240678e-01	ci right 4.256722e-01	k: 620310	n:1460000
KS ci ratio: 2.988795e-01	ci left: 1.002269e-04	ci right 1.360524e-04	k: 171	n:1460000
SETD5   1460000 perm   1172 sec   (1246 perm/sec)   p_kst 1.171233e-04   p_cons 4.248699e-01   p_joint 7.424658e-04

Joint ci ratio: 1.218633e-01	ci left: 6.605298e-04	ci right 7.468992e-04	k: 1033	n:1470000
Cons ci ratio: 3.761669e-03	ci left: 4.240721e-01	ci right 4.256710e-01	k: 624561	n:1470000
KS ci ratio: 2.971567e-01	ci left: 1.008039e-04	ci right 1.365888e-04	k: 173	n:1470000
SETD5   1470000 perm   1186 sec   (1240 perm/sec)   p_kst 1.176871e-04   p_cons 4.248714e-01   p_joint 7.027211e-04

Joint ci ratio: 1.246071e-01	ci left: 6.265978e-04	ci right 7.105113e-04	k: 988	n:1480000
Cons ci ratio: 3.749580e-03	ci left: 4.239913e-01	ci right 4.255847e-01	k: 628686	n:1480000
KS ci ratio: 2.963065e-01	ci left: 1.007482e-04	ci right 1.363917e-04	k: 174	n:1480000
SETD5   1480000 perm   1199 sec   (1234 perm/sec)   p_kst 1.175676e-04   p_cons 4.247878e-01   p_joint 6.675676e-04

Joint ci ratio: 1.241061e-01	ci left: 6.275946e-04	ci right 7.112788e-04	k: 996	n:1490000
Cons ci ratio: 3.737217e-03	ci left: 4.239625e-01	ci right 4.255505e-01	k: 632887	n:1490000
KS ci ratio: 2.963066e-01	ci left: 1.000720e-04	ci right 1.354764e-04	k: 174	n:1490000
SETD5   1490000 perm   1213 sec   (1228 perm/sec)   p_kst 1.167785e-04   p_cons 4.247564e-01   p_joint 6.684564e-04

Joint ci ratio: 1.237961e-01	ci left: 6.266406e-04	ci right 7.099736e-04	k: 1001	n:1500000
Cons ci ratio: 3.724569e-03	ci left: 4.239874e-01	ci right 4.255702e-01	k: 637168	n:1500000
KS ci ratio: 2.963068e-01	ci left: 9.940485e-05	ci right 1.345732e-04	k: 174	n:1500000
SETD5   1500000 perm   1228 sec   (1222 perm/sec)   p_kst 1.160000e-04   p_cons 4.247787e-01   p_joint 6.673333e-04

Joint ci ratio: 1.236729e-01	ci left: 6.237741e-04	ci right 7.066373e-04	k: 1003	n:1510000
Cons ci ratio: 3.712295e-03	ci left: 4.239796e-01	ci right 4.255571e-01	k: 641400	n:1510000
KS ci ratio: 2.963069e-01	ci left: 9.874653e-05	ci right 1.336820e-04	k: 174	n:1510000
SETD5   1510000 perm   1245 sec   (1213 perm/sec)   p_kst 1.152318e-04   p_cons 4.247682e-01   p_joint 6.642384e-04

Joint ci ratio: 1.231831e-01	ci left: 6.247710e-04	ci right 7.074140e-04	k: 1011	n:1520000
Cons ci ratio: 3.700246e-03	ci left: 4.239581e-01	ci right 4.255304e-01	k: 645611	n:1520000
KS ci ratio: 2.946280e-01	ci left: 9.931516e-05	ci right 1.342155e-04	k: 176	n:1520000
SETD5   1520000 perm   1259 sec   (1207 perm/sec)   p_kst 1.157895e-04   p_cons 4.247441e-01   p_joint 6.651316e-04

Joint ci ratio: 1.228800e-01	ci left: 6.238549e-04	ci right 7.061589e-04	k: 1016	n:1530000
Cons ci ratio: 3.687766e-03	ci left: 4.240094e-01	ci right 4.255765e-01	k: 649933	n:1530000
KS ci ratio: 2.946281e-01	ci left: 9.866604e-05	ci right 1.333383e-04	k: 176	n:1530000
SETD5   1530000 perm   1273 sec   (1202 perm/sec)   p_kst 1.150327e-04   p_cons 4.247928e-01   p_joint 6.640523e-04

Joint ci ratio: 1.225191e-01	ci left: 6.235804e-04	ci right 7.055890e-04	k: 1022	n:1540000
Cons ci ratio: 3.675720e-03	ci left: 4.240191e-01	ci right 4.255812e-01	k: 654192	n:1540000
KS ci ratio: 2.921624e-01	ci left: 9.983006e-05	ci right 1.345635e-04	k: 179	n:1540000
SETD5   1540000 perm   1288 sec   (1196 perm/sec)   p_kst 1.162338e-04   p_cons 4.248000e-01   p_joint 6.636364e-04

Joint ci ratio: 1.221614e-01	ci left: 6.233098e-04	ci right 7.050262e-04	k: 1028	n:1550000
Cons ci ratio: 3.663853e-03	ci left: 4.240203e-01	ci right 4.255774e-01	k: 658438	n:1550000
KS ci ratio: 2.921625e-01	ci left: 9.918599e-05	ci right 1.336953e-04	k: 179	n:1550000
SETD5   1550000 perm   1302 sec   (1190 perm/sec)   p_kst 1.154839e-04   p_cons 4.247987e-01   p_joint 6.632258e-04

Joint ci ratio: 1.251804e-01	ci left: 5.888749e-04	ci right 6.681263e-04	k: 979	n:1560000
Cons ci ratio: 3.652278e-03	ci left: 4.239979e-01	ci right 4.255499e-01	k: 662647	n:1560000
KS ci ratio: 2.913543e-01	ci left: 9.914430e-05	ci right 1.335261e-04	k: 180	n:1560000
SETD5   1560000 perm   1317 sec   (1185 perm/sec)   p_kst 1.153846e-04   p_cons 4.247737e-01   p_joint 6.275641e-04

Joint ci ratio: 1.245465e-01	ci left: 5.912946e-04	ci right 6.704389e-04	k: 989	n:1570000
Cons ci ratio: 3.640888e-03	ci left: 4.239655e-01	ci right 4.255125e-01	k: 666840	n:1570000
KS ci ratio: 2.889692e-01	ci left: 1.002846e-04	ci right 1.347251e-04	k: 183	n:1570000
SETD5   1570000 perm   1331 sec   (1179 perm/sec)   p_kst 1.165605e-04   p_cons 4.247389e-01   p_joint 6.299363e-04

Joint ci ratio: 1.241708e-01	ci left: 5.912316e-04	ci right 6.701112e-04	k: 995	n:1580000
Cons ci ratio: 3.629556e-03	ci left: 4.239398e-01	ci right 4.254820e-01	k: 671043	n:1580000
KS ci ratio: 2.858783e-01	ci left: 1.019991e-04	ci right 1.365861e-04	k: 187	n:1580000
SETD5   1580000 perm   1346 sec   (1174 perm/sec)   p_kst 1.183544e-04   p_cons 4.247108e-01   p_joint 6.297468e-04

Joint ci ratio: 1.262819e-01	ci left: 5.674081e-04	ci right 6.444927e-04	k: 962	n:1590000
Cons ci ratio: 3.617678e-03	ci left: 4.240026e-01	ci right 4.255398e-01	k: 675386	n:1590000
KS ci ratio: 2.858784e-01	ci left: 1.013575e-04	ci right 1.357270e-04	k: 187	n:1590000
SETD5   1590000 perm   1360 sec   (1169 perm/sec)   p_kst 1.176101e-04   p_cons 4.247711e-01   p_joint 6.050314e-04

Joint ci ratio: 1.269434e-01	ci left: 5.578095e-04	ci right 6.340170e-04	k: 952	n:1600000
Cons ci ratio: 3.606215e-03	ci left: 4.240239e-01	ci right 4.255564e-01	k: 679664	n:1600000
KS ci ratio: 2.828846e-01	ci left: 1.030458e-04	ci right 1.375565e-04	k: 191	n:1600000
SETD5   1600000 perm   1376 sec   (1163 perm/sec)   p_kst 1.193750e-04   p_cons 4.247900e-01   p_joint 5.950000e-04

Joint ci ratio: 1.264797e-01	ci left: 5.585549e-04	ci right 6.345645e-04	k: 959	n:1610000
Cons ci ratio: 3.595227e-03	ci left: 4.239953e-01	ci right 4.255230e-01	k: 683862	n:1610000
KS ci ratio: 2.821508e-01	ci left: 1.029829e-04	ci right 1.373672e-04	k: 192	n:1610000
SETD5   1610000 perm   1391 sec   (1157 perm/sec)   p_kst 1.192547e-04   p_cons 4.247590e-01   p_joint 5.956522e-04

Joint ci ratio: 1.258908e-01	ci left: 5.604873e-04	ci right 6.363783e-04	k: 968	n:1620000
Cons ci ratio: 3.584319e-03	ci left: 4.239695e-01	ci right 4.254925e-01	k: 688064	n:1620000
KS ci ratio: 2.807000e-01	ci left: 1.034946e-04	ci right 1.378407e-04	k: 194	n:1620000
SETD5   1620000 perm   1406 sec   (1152 perm/sec)   p_kst 1.197531e-04   p_cons 4.247309e-01   p_joint 5.975309e-04

Joint ci ratio: 1.256965e-01	ci left: 5.588312e-04	ci right 6.343725e-04	k: 971	n:1630000
Cons ci ratio: 3.572991e-03	ci left: 4.240152e-01	ci right 4.255335e-01	k: 692382	n:1630000
KS ci ratio: 2.799831e-01	ci left: 1.034301e-04	ci right 1.376515e-04	k: 195	n:1630000
SETD5   1630000 perm   1421 sec   (1147 perm/sec)   p_kst 1.196319e-04   p_cons 4.247742e-01   p_joint 5.957055e-04

Joint ci ratio: 1.259563e-01	ci left: 5.530614e-04	ci right 6.279888e-04	k: 967	n:1640000
Cons ci ratio: 3.561822e-03	ci left: 4.240530e-01	ci right 4.255667e-01	k: 696688	n:1640000
KS ci ratio: 2.792716e-01	ci left: 1.033664e-04	ci right 1.374646e-04	k: 196	n:1640000
SETD5   1640000 perm   1436 sec   (1142 perm/sec)   p_kst 1.195122e-04   p_cons 4.248098e-01   p_joint 5.896341e-04

Joint ci ratio: 1.253747e-01	ci left: 5.549926e-04	ci right 6.298086e-04	k: 976	n:1650000
Cons ci ratio: 3.550792e-03	ci left: 4.240856e-01	ci right 4.255947e-01	k: 700986	n:1650000
KS ci ratio: 2.744378e-01	ci left: 1.066879e-04	ci right 1.411676e-04	k: 203	n:1650000
SETD5   1650000 perm   1452 sec   (1137 perm/sec)   p_kst 1.230303e-04   p_cons 4.248400e-01   p_joint 5.915152e-04

Joint ci ratio: 1.287832e-01	ci left: 5.219023e-04	ci right 5.943165e-04	k: 925	n:1660000
Cons ci ratio: 3.540139e-03	ci left: 4.240798e-01	ci right 4.255843e-01	k: 705221	n:1660000
KS ci ratio: 2.731023e-01	ci left: 1.071674e-04	ci right 1.416045e-04	k: 205	n:1660000
SETD5   1660000 perm   1467 sec   (1131 perm/sec)   p_kst 1.234940e-04   p_cons 4.248319e-01   p_joint 5.572289e-04

Joint ci ratio: 1.301979e-01	ci left: 5.071888e-04	ci right 5.783942e-04	k: 905	n:1670000
Cons ci ratio: 3.529543e-03	ci left: 4.240795e-01	ci right 4.255795e-01	k: 709465	n:1670000
KS ci ratio: 2.717861e-01	ci left: 1.076414e-04	ci right 1.420358e-04	k: 207	n:1670000
SETD5   1670000 perm   1483 sec   (1126 perm/sec)   p_kst 1.239521e-04   p_cons 4.248293e-01   p_joint 5.419162e-04

Joint ci ratio: 1.297689e-01	ci left: 5.076251e-04	ci right 5.786389e-04	k: 911	n:1680000
Cons ci ratio: 3.519037e-03	ci left: 4.240797e-01	ci right 4.255753e-01	k: 713710	n:1680000
KS ci ratio: 2.711351e-01	ci left: 1.075554e-04	ci right 1.418260e-04	k: 208	n:1680000
SETD5   1680000 perm   1499 sec   (1121 perm/sec)   p_kst 1.238095e-04   p_cons 4.248274e-01   p_joint 5.422619e-04

Joint ci ratio: 1.294146e-01	ci left: 5.074840e-04	ci right 5.782694e-04	k: 916	n:1690000
Cons ci ratio: 3.508938e-03	ci left: 4.240362e-01	ci right 4.255273e-01	k: 717881	n:1690000
KS ci ratio: 2.704888e-01	ci left: 1.074706e-04	ci right 1.416186e-04	k: 209	n:1690000
SETD5   1690000 perm   1514 sec   (1116 perm/sec)   p_kst 1.236686e-04   p_cons 4.247817e-01   p_joint 5.420118e-04

Joint ci ratio: 1.287841e-01	ci left: 5.096220e-04	ci right 5.803328e-04	k: 925	n:1700000
Cons ci ratio: 3.498581e-03	ci left: 4.240415e-01	ci right 4.255282e-01	k: 722134	n:1700000
KS ci ratio: 2.698471e-01	ci left: 1.073868e-04	ci right 1.414135e-04	k: 210	n:1700000
SETD5   1700000 perm   1530 sec   (1111 perm/sec)   p_kst 1.235294e-04   p_cons 4.247847e-01   p_joint 5.441176e-04

Joint ci ratio: 1.324862e-01	ci left: 4.777912e-04	ci right 5.461412e-04	k: 874	n:1710000
Cons ci ratio: 3.488432e-03	ci left: 4.240303e-01	ci right 4.255126e-01	k: 726359	n:1710000
KS ci ratio: 2.692099e-01	ci left: 1.073041e-04	ci right 1.412108e-04	k: 211	n:1710000
SETD5   1710000 perm   1546 sec   (1106 perm/sec)   p_kst 1.233918e-04   p_cons 4.247713e-01   p_joint 5.111111e-04

Joint ci ratio: 1.321845e-01	ci left: 4.772619e-04	ci right 5.453685e-04	k: 878	n:1720000
Cons ci ratio: 3.478213e-03	ci left: 4.240413e-01	ci right 4.255194e-01	k: 730622	n:1720000
KS ci ratio: 2.685773e-01	ci left: 1.072224e-04	ci right 1.410103e-04	k: 212	n:1720000
SETD5   1720000 perm   1562 sec   (1101 perm/sec)   p_kst 1.232558e-04   p_cons 4.247802e-01   p_joint 5.104651e-04

Joint ci ratio: 1.319596e-01	ci left: 4.761799e-04	ci right 5.440074e-04	k: 881	n:1730000
Cons ci ratio: 3.468128e-03	ci left: 4.240459e-01	ci right 4.255197e-01	k: 734874	n:1730000
KS ci ratio: 2.685774e-01	ci left: 1.066026e-04	ci right 1.401952e-04	k: 212	n:1730000
SETD5   1730000 perm   1578 sec   (1096 perm/sec)   p_kst 1.225434e-04   p_cons 4.247827e-01   p_joint 5.092486e-04

Joint ci ratio: 1.315130e-01	ci left: 4.767779e-04	ci right 5.444428e-04	k: 887	n:1740000
Cons ci ratio: 3.458461e-03	ci left: 4.240039e-01	ci right 4.254734e-01	k: 739045	n:1740000
KS ci ratio: 2.667056e-01	ci left: 1.075984e-04	ci right 1.412290e-04	k: 215	n:1740000
SETD5   1740000 perm   1594 sec   (1092 perm/sec)   p_kst 1.235632e-04   p_cons 4.247385e-01   p_joint 5.097701e-04

Joint ci ratio: 1.312915e-01	ci left: 4.757114e-04	ci right 5.431023e-04	k: 890	n:1750000
Cons ci ratio: 3.448720e-03	ci left: 4.239841e-01	ci right 4.254493e-01	k: 743254	n:1750000
KS ci ratio: 2.660904e-01	ci left: 1.075169e-04	ci right 1.410315e-04	k: 216	n:1750000
SETD5   1750000 perm   1610 sec   (1087 perm/sec)   p_kst 1.234286e-04   p_cons 4.247166e-01   p_joint 5.085714e-04

Joint ci ratio: 1.310711e-01	ci left: 4.746571e-04	ci right 5.417770e-04	k: 893	n:1760000
Cons ci ratio: 3.438745e-03	ci left: 4.240093e-01	ci right 4.254705e-01	k: 747542	n:1760000
KS ci ratio: 2.648725e-01	ci left: 1.079667e-04	ci right 1.414420e-04	k: 218	n:1760000
SETD5   1760000 perm   1626 sec   (1083 perm/sec)   p_kst 1.238636e-04   p_cons 4.247398e-01   p_joint 5.073864e-04

Joint ci ratio: 1.309248e-01	ci left: 4.730683e-04	ci right 5.398831e-04	k: 895	n:1770000
Cons ci ratio: 3.428674e-03	ci left: 4.240603e-01	ci right 4.255173e-01	k: 751876	n:1770000
KS ci ratio: 2.648726e-01	ci left: 1.073567e-04	ci right 1.406429e-04	k: 218	n:1770000
SETD5   1770000 perm   1642 sec   (1078 perm/sec)   p_kst 1.231638e-04   p_cons 4.247887e-01   p_joint 5.056497e-04

Joint ci ratio: 1.306336e-01	ci left: 4.725843e-04	ci right 5.391707e-04	k: 899	n:1780000
Cons ci ratio: 3.419257e-03	ci left: 4.240299e-01	ci right 4.254827e-01	k: 756066	n:1780000
KS ci ratio: 2.636713e-01	ci left: 1.078028e-04	ci right 1.410506e-04	k: 220	n:1780000
SETD5   1780000 perm   1658 sec   (1074 perm/sec)   p_kst 1.235955e-04   p_cons 4.247562e-01   p_joint 5.050562e-04

Joint ci ratio: 1.302722e-01	ci left: 4.726463e-04	ci right 5.390430e-04	k: 904	n:1790000
Cons ci ratio: 3.409718e-03	ci left: 4.240282e-01	ci right 4.254770e-01	k: 760307	n:1790000
KS ci ratio: 2.630768e-01	ci left: 1.077223e-04	ci right 1.408581e-04	k: 221	n:1790000
SETD5   1790000 perm   1674 sec   (1069 perm/sec)   p_kst 1.234637e-04   p_cons 4.247525e-01   p_joint 5.050279e-04

Joint ci ratio: 1.300569e-01	ci left: 4.716328e-04	ci right 5.377692e-04	k: 907	n:1800000
Cons ci ratio: 3.400429e-03	ci left: 4.240022e-01	ci right 4.254470e-01	k: 764504	n:1800000
KS ci ratio: 2.618996e-01	ci left: 1.081618e-04	ci right 1.412596e-04	k: 223	n:1800000
SETD5   1800000 perm   1691 sec   (1065 perm/sec)   p_kst 1.238889e-04   p_cons 4.247244e-01   p_joint 5.038889e-04

Joint ci ratio: 1.305616e-01	ci left: 4.652857e-04	ci right 5.308049e-04	k: 900	n:1810000
Cons ci ratio: 3.390839e-03	ci left: 4.240306e-01	ci right 4.254713e-01	k: 768799	n:1810000
KS ci ratio: 2.613170e-01	ci left: 1.080805e-04	ci right 1.410678e-04	k: 224	n:1810000
SETD5   1810000 perm   1707 sec   (1060 perm/sec)   p_kst 1.237569e-04   p_cons 4.247508e-01   p_joint 4.972376e-04

Joint ci ratio: 1.301290e-01	ci left: 4.659184e-04	ci right 5.312925e-04	k: 906	n:1820000
Cons ci ratio: 3.381209e-03	ci left: 4.240762e-01	ci right 4.255130e-01	k: 773126	n:1820000
KS ci ratio: 2.607383e-01	ci left: 1.080002e-04	ci right 1.408780e-04	k: 225	n:1820000
SETD5   1820000 perm   1723 sec   (1056 perm/sec)   p_kst 1.236264e-04   p_cons 4.247945e-01   p_joint 4.978022e-04

Joint ci ratio: 1.299859e-01	ci left: 4.644297e-04	ci right 5.295177e-04	k: 908	n:1830000
Cons ci ratio: 3.372207e-03	ci left: 4.240421e-01	ci right 4.254750e-01	k: 777308	n:1830000
KS ci ratio: 2.601633e-01	ci left: 1.079208e-04	ci right 1.406902e-04	k: 226	n:1830000
SETD5   1830000 perm   1740 sec   (1052 perm/sec)   p_kst 1.234973e-04   p_cons 4.247585e-01   p_joint 4.961749e-04

Joint ci ratio: 1.292765e-01	ci left: 4.671642e-04	ci right 5.322508e-04	k: 918	n:1840000
Cons ci ratio: 3.362954e-03	ci left: 4.240552e-01	ci right 4.254842e-01	k: 781576	n:1840000
KS ci ratio: 2.579008e-01	ci left: 1.093671e-04	ci right 1.422403e-04	k: 230	n:1840000
SETD5   1840000 perm   1756 sec   (1048 perm/sec)   p_kst 1.250000e-04   p_cons 4.247696e-01   p_joint 4.989130e-04

Joint ci ratio: 1.286480e-01	ci left: 4.693470e-04	ci right 5.343954e-04	k: 927	n:1850000
Cons ci ratio: 3.353792e-03	ci left: 4.240659e-01	ci right 4.254911e-01	k: 785840	n:1850000
KS ci ratio: 2.573444e-01	ci left: 1.092815e-04	ci right 1.420468e-04	k: 231	n:1850000
SETD5   1850000 perm   1773 sec   (1043 perm/sec)   p_kst 1.248649e-04   p_cons 4.247784e-01   p_joint 5.010811e-04

Joint ci ratio: 1.283717e-01	ci left: 4.689050e-04	ci right 5.337420e-04	k: 931	n:1860000
Cons ci ratio: 3.344595e-03	ci left: 4.240927e-01	ci right 4.255140e-01	k: 790134	n:1860000
KS ci ratio: 2.567916e-01	ci left: 1.091970e-04	ci right 1.418553e-04	k: 232	n:1860000
SETD5   1860000 perm   1790 sec   (1039 perm/sec)   p_kst 1.247312e-04   p_cons 4.248032e-01   p_joint 5.005376e-04

Joint ci ratio: 1.280287e-01	ci left: 4.689855e-04	ci right 5.336472e-04	k: 936	n:1870000
Cons ci ratio: 3.335549e-03	ci left: 4.241079e-01	ci right 4.255254e-01	k: 794407	n:1870000
KS ci ratio: 2.556965e-01	ci left: 1.096139e-04	ci right 1.422348e-04	k: 234	n:1870000
SETD5   1870000 perm   1807 sec   (1035 perm/sec)   p_kst 1.251337e-04   p_cons 4.248166e-01   p_joint 5.005348e-04

Joint ci ratio: 1.275531e-01	ci left: 4.700953e-04	ci right 5.346510e-04	k: 943	n:1880000
Cons ci ratio: 3.326887e-03	ci left: 4.240773e-01	ci right 4.254910e-01	k: 798594	n:1880000
KS ci ratio: 2.546152e-01	ci left: 1.100266e-04	ci right 1.426099e-04	k: 236	n:1880000
SETD5   1880000 perm   1824 sec   (1030 perm/sec)   p_kst 1.255319e-04   p_cons 4.247840e-01   p_joint 5.015957e-04

Joint ci ratio: 1.269492e-01	ci left: 4.722184e-04	ci right 5.367356e-04	k: 952	n:1890000
Cons ci ratio: 3.318361e-03	ci left: 4.240369e-01	ci right 4.254469e-01	k: 802762	n:1890000
KS ci ratio: 2.530188e-01	ci left: 1.109308e-04	ci right 1.435434e-04	k: 239	n:1890000
SETD5   1890000 perm   1841 sec   (1026 perm/sec)   p_kst 1.264550e-04   p_cons 4.247418e-01   p_joint 5.037037e-04

Joint ci ratio: 1.264196e-01	ci left: 4.738102e-04	ci right 5.382545e-04	k: 960	n:1900000
Cons ci ratio: 3.309522e-03	ci left: 4.240528e-01	ci right 4.254590e-01	k: 807036	n:1900000
KS ci ratio: 2.519710e-01	ci left: 1.113330e-04	ci right 1.439070e-04	k: 241	n:1900000
SETD5   1900000 perm   1858 sec   (1022 perm/sec)   p_kst 1.268421e-04   p_cons 4.247558e-01   p_joint 5.052632e-04

Joint ci ratio: 1.258966e-01	ci left: 4.753858e-04	ci right 5.397570e-04	k: 968	n:1910000
Cons ci ratio: 3.300924e-03	ci left: 4.240433e-01	ci right 4.254459e-01	k: 811262	n:1910000
KS ci ratio: 2.509362e-01	ci left: 1.117312e-04	ci right 1.442666e-04	k: 243	n:1910000
SETD5   1910000 perm   1876 sec   (1018 perm/sec)   p_kst 1.272251e-04   p_cons 4.247445e-01   p_joint 5.068063e-04

Joint ci ratio: 1.256376e-01	ci left: 4.749276e-04	ci right 5.390946e-04	k: 972	n:1920000
Cons ci ratio: 3.292483e-03	ci left: 4.240205e-01	ci right 4.254193e-01	k: 815462	n:1920000
KS ci ratio: 2.504236e-01	ci left: 1.116374e-04	ci right 1.440687e-04	k: 244	n:1920000
SETD5   1920000 perm   1893 sec   (1014 perm/sec)   p_kst 1.270833e-04   p_cons 4.247198e-01   p_joint 5.062500e-04

Joint ci ratio: 1.251241e-01	ci left: 4.764819e-04	ci right 5.405763e-04	k: 980	n:1930000
Cons ci ratio: 3.283755e-03	ci left: 4.240502e-01	ci right 4.254454e-01	k: 819763	n:1930000
KS ci ratio: 2.494076e-01	ci left: 1.120304e-04	ci right 1.444232e-04	k: 246	n:1930000
SETD5   1930000 perm   1910 sec   (1010 perm/sec)   p_kst 1.274611e-04   p_cons 4.247477e-01   p_joint 5.077720e-04

Joint ci ratio: 1.247432e-01	ci left: 4.770220e-04	ci right 5.409793e-04	k: 986	n:1940000
Cons ci ratio: 3.275306e-03	ci left: 4.240481e-01	ci right 4.254398e-01	k: 824003	n:1940000
KS ci ratio: 2.494077e-01	ci left: 1.114529e-04	ci right 1.436788e-04	k: 246	n:1940000
SETD5   1940000 perm   1928 sec   (1006 perm/sec)   p_kst 1.268041e-04   p_cons 4.247438e-01   p_joint 5.082474e-04

Joint ci ratio: 1.243031e-01	ci left: 4.780537e-04	ci right 5.419065e-04	k: 993	n:1950000
Cons ci ratio: 3.266628e-03	ci left: 4.240902e-01	ci right 4.254783e-01	k: 828329	n:1950000
KS ci ratio: 2.479066e-01	ci left: 1.123239e-04	ci right 1.445761e-04	k: 249	n:1950000
SETD5   1950000 perm   1945 sec   (1002 perm/sec)   p_kst 1.276923e-04   p_cons 4.247841e-01   p_joint 5.092308e-04

Joint ci ratio: 1.242408e-01	ci left: 4.761089e-04	ci right 5.396677e-04	k: 994	n:1960000
Cons ci ratio: 3.258270e-03	ci left: 4.240941e-01	ci right 4.254786e-01	k: 832581	n:1960000
KS ci ratio: 2.479067e-01	ci left: 1.117509e-04	ci right 1.438385e-04	k: 249	n:1960000
SETD5   1960000 perm   1963 sec   (998 perm/sec)   p_kst 1.270408e-04   p_cons 4.247862e-01   p_joint 5.071429e-04

Joint ci ratio: 1.257677e-01	ci left: 4.618901e-04	ci right 5.243651e-04	k: 970	n:1970000
Cons ci ratio: 3.249780e-03	ci left: 4.241274e-01	ci right 4.255084e-01	k: 836891	n:1970000
KS ci ratio: 2.459468e-01	ci left: 1.130884e-04	ci right 1.452642e-04	k: 253	n:1970000
SETD5   1970000 perm   1981 sec   (995 perm/sec)   p_kst 1.284264e-04   p_cons 4.248178e-01   p_joint 4.923858e-04

Joint ci ratio: 1.255095e-01	ci left: 4.615140e-04	ci right 5.238005e-04	k: 974	n:1980000
Cons ci ratio: 3.241520e-03	ci left: 4.241356e-01	ci right 4.255131e-01	k: 841152	n:1980000
KS ci ratio: 2.459468e-01	ci left: 1.125173e-04	ci right 1.445305e-04	k: 253	n:1980000
SETD5   1980000 perm   1998 sec   (991 perm/sec)   p_kst 1.277778e-04   p_cons 4.248242e-01   p_joint 4.919192e-04

Joint ci ratio: 1.249341e-01	ci left: 4.635758e-04	ci right 5.258325e-04	k: 983	n:1990000
Cons ci ratio: 3.233290e-03	ci left: 4.241487e-01	ci right 4.255228e-01	k: 845423	n:1990000
KS ci ratio: 2.445070e-01	ci left: 1.133668e-04	ci right 1.454042e-04	k: 256	n:1990000
SETD5   1990000 perm   2016 sec   (987 perm/sec)   p_kst 1.286432e-04   p_cons 4.248357e-01   p_joint 4.939698e-04

Joint ci ratio: 1.308556e-01	ci left: 4.191483e-04	ci right 4.783138e-04	k: 896	n:2000000
Cons ci ratio: 3.225164e-03	ci left: 4.241553e-01	ci right 4.255259e-01	k: 849681	n:2000000
KS ci ratio: 2.440327e-01	ci left: 1.132693e-04	ci right 1.452077e-04	k: 257	n:2000000
SETD5   2000000 perm   2035 sec   (983 perm/sec)   p_kst 1.285000e-04   p_cons 4.248405e-01   p_joint 4.480000e-04

Joint ci ratio: 1.304201e-01	ci left: 4.199505e-04	ci right 4.790167e-04	k: 902	n:2010000
Cons ci ratio: 3.217110e-03	ci left: 4.241603e-01	ci right 4.255275e-01	k: 853936	n:2010000
KS ci ratio: 2.440328e-01	ci left: 1.127058e-04	ci right 1.444853e-04	k: 257	n:2010000
SETD5   2010000 perm   2053 sec   (979 perm/sec)   p_kst 1.278607e-04   p_cons 4.248438e-01   p_joint 4.487562e-04

Joint ci ratio: 1.299174e-01	ci left: 4.212241e-04	ci right 4.802235e-04	k: 909	n:2020000
Cons ci ratio: 3.208953e-03	ci left: 4.241900e-01	ci right 4.255538e-01	k: 858241	n:2020000
KS ci ratio: 2.426262e-01	ci left: 1.135425e-04	ci right 1.453455e-04	k: 260	n:2020000
SETD5   2020000 perm   2071 sec   (975 perm/sec)   p_kst 1.287129e-04   p_cons 4.248718e-01   p_joint 4.500000e-04

Joint ci ratio: 1.297750e-01	ci left: 4.201023e-04	ci right 4.788751e-04	k: 911	n:2030000
Cons ci ratio: 3.201084e-03	ci left: 4.241849e-01	ci right 4.255454e-01	k: 862476	n:2030000
KS ci ratio: 2.426262e-01	ci left: 1.129831e-04	ci right 1.446296e-04	k: 260	n:2030000
SETD5   2030000 perm   2089 sec   (972 perm/sec)   p_kst 1.280788e-04   p_cons 4.248650e-01   p_joint 4.487685e-04

Joint ci ratio: 1.295621e-01	ci left: 4.194658e-04	ci right 4.780459e-04	k: 914	n:2040000
Cons ci ratio: 3.193304e-03	ci left: 4.241750e-01	ci right 4.255321e-01	k: 866701	n:2040000
KS ci ratio: 2.426263e-01	ci left: 1.124293e-04	ci right 1.439206e-04	k: 260	n:2040000
SETD5   2040000 perm   2107 sec   (968 perm/sec)   p_kst 1.274510e-04   p_cons 4.248534e-01   p_joint 4.480392e-04

Joint ci ratio: 1.293503e-01	ci left: 4.188357e-04	ci right 4.772248e-04	k: 917	n:2050000
Cons ci ratio: 3.185667e-03	ci left: 4.241520e-01	ci right 4.255058e-01	k: 870899	n:2050000
KS ci ratio: 2.426264e-01	ci left: 1.118808e-04	ci right 1.432186e-04	k: 260	n:2050000
SETD5   2050000 perm   2126 sec   (964 perm/sec)   p_kst 1.268293e-04   p_cons 4.248288e-01   p_joint 4.473171e-04

Joint ci ratio: 1.290694e-01	ci left: 4.186815e-04	ci right 4.769126e-04	k: 921	n:2060000
Cons ci ratio: 3.178176e-03	ci left: 4.241151e-01	ci right 4.254657e-01	k: 875068	n:2060000
KS ci ratio: 2.421629e-01	ci left: 1.117937e-04	ci right 1.430382e-04	k: 261	n:2060000
SETD5   2060000 perm   2145 sec   (960 perm/sec)   p_kst 1.266990e-04   p_cons 4.247903e-01   p_joint 4.470874e-04

Joint ci ratio: 1.287208e-01	ci left: 4.189964e-04	ci right 4.771020e-04	k: 926	n:2070000
Cons ci ratio: 3.170624e-03	ci left: 4.240960e-01	ci right 4.254433e-01	k: 879273	n:2070000
KS ci ratio: 2.412439e-01	ci left: 1.121613e-04	ci right 1.433718e-04	k: 263	n:2070000
SETD5   2070000 perm   2164 sec   (957 perm/sec)   p_kst 1.270531e-04   p_cons 4.247696e-01   p_joint 4.473430e-04

Joint ci ratio: 1.285131e-01	ci left: 4.183779e-04	ci right 4.762969e-04	k: 929	n:2080000
Cons ci ratio: 3.162675e-03	ci left: 4.241468e-01	ci right 4.254909e-01	k: 883623	n:2080000
KS ci ratio: 2.407883e-01	ci left: 1.120738e-04	ci right 1.431922e-04	k: 264	n:2080000
SETD5   2080000 perm   2182 sec   (953 perm/sec)   p_kst 1.269231e-04   p_cons 4.248188e-01   p_joint 4.466346e-04

Joint ci ratio: 1.282376e-01	ci left: 4.182285e-04	ci right 4.759933e-04	k: 933	n:2090000
Cons ci ratio: 3.154757e-03	ci left: 4.242015e-01	ci right 4.255423e-01	k: 887982	n:2090000
KS ci ratio: 2.398847e-01	ci left: 1.124369e-04	ci right 1.435215e-04	k: 266	n:2090000
SETD5   2090000 perm   2201 sec   (950 perm/sec)   p_kst 1.272727e-04   p_cons 4.248718e-01   p_joint 4.464115e-04

Joint ci ratio: 1.297048e-01	ci left: 4.065594e-04	ci right 4.634044e-04	k: 912	n:2100000
Cons ci ratio: 3.147531e-03	ci left: 4.241575e-01	ci right 4.254951e-01	k: 892135	n:2100000
KS ci ratio: 2.394368e-01	ci left: 1.123491e-04	ci right 1.433428e-04	k: 267	n:2100000
SETD5   2100000 perm   2220 sec   (946 perm/sec)   p_kst 1.271429e-04   p_cons 4.248262e-01   p_joint 4.342857e-04

Joint ci ratio: 1.292104e-01	ci left: 4.078427e-04	ci right 4.646331e-04	k: 919	n:2110000
Cons ci ratio: 3.139857e-03	ci left: 4.241912e-01	ci right 4.255256e-01	k: 896451	n:2110000
KS ci ratio: 2.376695e-01	ci left: 1.135990e-04	ci right 1.446723e-04	k: 271	n:2110000
SETD5   2110000 perm   2239 sec   (942 perm/sec)   p_kst 1.284360e-04   p_cons 4.248583e-01   p_joint 4.355450e-04

Joint ci ratio: 1.307116e-01	ci left: 3.963351e-04	ci right 4.522141e-04	k: 898	n:2120000
Cons ci ratio: 3.132859e-03	ci left: 4.241279e-01	ci right 4.254591e-01	k: 900562	n:2120000
KS ci ratio: 2.376696e-01	ci left: 1.130632e-04	ci right 1.439899e-04	k: 271	n:2120000
SETD5   2120000 perm   2258 sec   (939 perm/sec)   p_kst 1.278302e-04   p_cons 4.247934e-01   p_joint 4.235849e-04

Joint ci ratio: 1.305665e-01	ci left: 3.953827e-04	ci right 4.510607e-04	k: 900	n:2130000
Cons ci ratio: 3.125694e-03	ci left: 4.240985e-01	ci right 4.254266e-01	k: 904744	n:2130000
KS ci ratio: 2.368006e-01	ci left: 1.134155e-04	ci right 1.443086e-04	k: 273	n:2130000
SETD5   2130000 perm   2277 sec   (936 perm/sec)   p_kst 1.281690e-04   p_cons 4.247624e-01   p_joint 4.225352e-04

Joint ci ratio: 1.350655e-01	ci left: 3.668804e-04	ci right 4.204680e-04	k: 841	n:2140000
Cons ci ratio: 3.118471e-03	ci left: 4.240862e-01	ci right 4.254112e-01	k: 908962	n:2140000
KS ci ratio: 2.363697e-01	ci left: 1.133252e-04	ci right 1.441292e-04	k: 274	n:2140000
SETD5   2140000 perm   2296 sec   (932 perm/sec)   p_kst 1.280374e-04   p_cons 4.247486e-01   p_joint 3.929907e-04

Joint ci ratio: 1.345075e-01	ci left: 3.683201e-04	ci right 4.218778e-04	k: 848	n:2150000
Cons ci ratio: 3.111034e-03	ci left: 4.241154e-01	ci right 4.254373e-01	k: 913269	n:2150000
KS ci ratio: 2.355147e-01	ci left: 1.136733e-04	ci right 1.444439e-04	k: 276	n:2150000
SETD5   2150000 perm   2315 sec   (929 perm/sec)   p_kst 1.283721e-04   p_cons 4.247763e-01   p_joint 3.944186e-04

Joint ci ratio: 1.341917e-01	ci left: 3.684045e-04	ci right 4.218388e-04	k: 852	n:2160000
Cons ci ratio: 3.103964e-03	ci left: 4.240948e-01	ci right 4.254137e-01	k: 917469	n:2160000
KS ci ratio: 2.346690e-01	ci left: 1.140184e-04	ci right 1.447555e-04	k: 278	n:2160000
SETD5   2160000 perm   2334 sec   (925 perm/sec)   p_kst 1.287037e-04   p_cons 4.247542e-01   p_joint 3.944444e-04

Joint ci ratio: 1.338782e-01	ci left: 3.684883e-04	ci right 4.217999e-04	k: 856	n:2170000
Cons ci ratio: 3.096899e-03	ci left: 4.240814e-01	ci right 4.253972e-01	k: 921684	n:2170000
KS ci ratio: 2.338324e-01	ci left: 1.143606e-04	ci right 1.450641e-04	k: 280	n:2170000
SETD5   2170000 perm   2354 sec   (922 perm/sec)   p_kst 1.290323e-04   p_cons 4.247392e-01   p_joint 3.944700e-04

Joint ci ratio: 1.338002e-01	ci left: 3.672413e-04	ci right 4.203391e-04	k: 857	n:2180000
Cons ci ratio: 3.089792e-03	ci left: 4.240822e-01	ci right 4.253950e-01	k: 925930	n:2180000
KS ci ratio: 2.338325e-01	ci left: 1.138360e-04	ci right 1.443987e-04	k: 280	n:2180000
SETD5   2180000 perm   2374 sec   (918 perm/sec)   p_kst 1.284404e-04   p_cons 4.247385e-01   p_joint 3.931193e-04

Joint ci ratio: 1.336446e-01	ci left: 3.664471e-04	ci right 4.193636e-04	k: 859	n:2190000
Cons ci ratio: 3.082814e-03	ci left: 4.240703e-01	ci right 4.253801e-01	k: 930148	n:2190000
KS ci ratio: 2.338325e-01	ci left: 1.133162e-04	ci right 1.437393e-04	k: 280	n:2190000
SETD5   2190000 perm   2393 sec   (915 perm/sec)   p_kst 1.278539e-04   p_cons 4.247251e-01   p_joint 3.922374e-04

Joint ci ratio: 1.335671e-01	ci left: 3.652207e-04	ci right 4.179271e-04	k: 860	n:2200000
Cons ci ratio: 3.075827e-03	ci left: 4.240676e-01	ci right 4.253744e-01	k: 934386	n:2200000
KS ci ratio: 2.334176e-01	ci left: 1.132291e-04	ci right 1.435671e-04	k: 281	n:2200000
SETD5   2200000 perm   2413 sec   (912 perm/sec)   p_kst 1.277273e-04   p_cons 4.247209e-01   p_joint 3.909091e-04

Joint ci ratio: 1.334123e-01	ci left: 3.644429e-04	ci right 4.169712e-04	k: 862	n:2210000
Cons ci ratio: 3.068656e-03	ci left: 4.241016e-01	ci right 4.254054e-01	k: 938705	n:2210000
KS ci ratio: 2.325942e-01	ci left: 1.135689e-04	ci right 1.438752e-04	k: 283	n:2210000
SETD5   2210000 perm   2433 sec   (908 perm/sec)   p_kst 1.280543e-04   p_cons 4.247534e-01   p_joint 3.900452e-04

Joint ci ratio: 1.333351e-01	ci left: 3.632367e-04	ci right 4.155585e-04	k: 863	n:2220000
Cons ci ratio: 3.061831e-03	ci left: 4.240879e-01	ci right 4.253888e-01	k: 942919	n:2220000
KS ci ratio: 2.325943e-01	ci left: 1.130573e-04	ci right 1.432271e-04	k: 283	n:2220000
SETD5   2220000 perm   2453 sec   (905 perm/sec)   p_kst 1.274775e-04   p_cons 4.247383e-01   p_joint 3.887387e-04

Joint ci ratio: 1.331043e-01	ci left: 3.629083e-04	ci right 4.150851e-04	k: 866	n:2230000
Cons ci ratio: 3.054957e-03	ci left: 4.240897e-01	ci right 4.253877e-01	k: 947167	n:2230000
KS ci ratio: 2.325943e-01	ci left: 1.125503e-04	ci right 1.425848e-04	k: 283	n:2230000
SETD5   2230000 perm   2475 sec   (901 perm/sec)   p_kst 1.269058e-04   p_cons 4.247386e-01   p_joint 3.883408e-04

Joint ci ratio: 1.327221e-01	ci left: 3.634461e-04	ci right 4.155383e-04	k: 871	n:2240000
Cons ci ratio: 3.048326e-03	ci left: 4.240597e-01	ci right 4.253548e-01	k: 951344	n:2240000
KS ci ratio: 2.317796e-01	ci left: 1.128888e-04	ci right 1.428930e-04	k: 285	n:2240000
SETD5   2240000 perm   2498 sec   (897 perm/sec)   p_kst 1.272321e-04   p_cons 4.247071e-01   p_joint 3.888393e-04

Joint ci ratio: 1.321925e-01	ci left: 3.648388e-04	ci right 4.169056e-04	k: 878	n:2250000
Cons ci ratio: 3.041417e-03	ci left: 4.240816e-01	ci right 4.253737e-01	k: 955637	n:2250000
KS ci ratio: 2.305734e-01	ci left: 1.136432e-04	ci right 1.436683e-04	k: 288	n:2250000
SETD5   2250000 perm   2519 sec   (893 perm/sec)   p_kst 1.280000e-04   p_cons 4.247276e-01   p_joint 3.902222e-04

Joint ci ratio: 1.385684e-01	ci left: 3.294515e-04	ci right 3.789231e-04	k: 799	n:2260000
Cons ci ratio: 3.034745e-03	ci left: 4.240727e-01	ci right 4.253620e-01	k: 959861	n:2260000
KS ci ratio: 2.289939e-01	ci left: 1.148084e-04	ci right 1.449042e-04	k: 292	n:2260000
SETD5   2260000 perm   2539 sec   (890 perm/sec)   p_kst 1.292035e-04   p_cons 4.247173e-01   p_joint 3.535398e-04

Joint ci ratio: 1.383955e-01	ci left: 3.288507e-04	ci right 3.781654e-04	k: 801	n:2270000
Cons ci ratio: 3.028157e-03	ci left: 4.240573e-01	ci right 4.253438e-01	k: 964070	n:2270000
KS ci ratio: 2.286042e-01	ci left: 1.147179e-04	ci right 1.447316e-04	k: 293	n:2270000
SETD5   2270000 perm   2559 sec   (887 perm/sec)   p_kst 1.290749e-04   p_cons 4.247004e-01   p_joint 3.528634e-04

Joint ci ratio: 1.381374e-01	ci left: 3.286787e-04	ci right 3.778681e-04	k: 804	n:2280000
Cons ci ratio: 3.021599e-03	ci left: 4.240442e-01	ci right 4.253279e-01	k: 968284	n:2280000
KS ci ratio: 2.278305e-01	ci left: 1.150418e-04	ci right 1.450241e-04	k: 295	n:2280000
SETD5   2280000 perm   2579 sec   (884 perm/sec)   p_kst 1.293860e-04   p_cons 4.246860e-01   p_joint 3.526316e-04

Joint ci ratio: 1.386554e-01	ci left: 3.247140e-04	ci right 3.735073e-04	k: 798	n:2290000
Cons ci ratio: 3.014757e-03	ci left: 4.240841e-01	ci right 4.253650e-01	k: 972619	n:2290000
KS ci ratio: 2.278306e-01	ci left: 1.145394e-04	ci right 1.443908e-04	k: 295	n:2290000
SETD5   2290000 perm   2600 sec   (881 perm/sec)   p_kst 1.288210e-04   p_cons 4.247245e-01   p_joint 3.484716e-04

Joint ci ratio: 1.383958e-01	ci left: 3.245613e-04	ci right 3.732329e-04	k: 801	n:2300000
Cons ci ratio: 3.008197e-03	ci left: 4.240854e-01	ci right 4.253635e-01	k: 976866	n:2300000
KS ci ratio: 2.274467e-01	ci left: 1.144514e-04	ci right 1.442225e-04	k: 296	n:2300000
SETD5   2300000 perm   2620 sec   (878 perm/sec)   p_kst 1.286957e-04   p_cons 4.247243e-01   p_joint 3.482609e-04

Joint ci ratio: 1.379664e-01	ci left: 3.252460e-04	ci right 3.738565e-04	k: 806	n:2310000
Cons ci ratio: 3.001751e-03	ci left: 4.240750e-01	ci right 4.253503e-01	k: 981086	n:2310000
KS ci ratio: 2.259303e-01	ci left: 1.155892e-04	ci right 1.454279e-04	k: 300	n:2310000
SETD5   2310000 perm   2641 sec   (875 perm/sec)   p_kst 1.298701e-04   p_cons 4.247126e-01   p_joint 3.489177e-04

Joint ci ratio: 1.376257e-01	ci left: 3.255088e-04	ci right 3.740285e-04	k: 810	n:2320000
Cons ci ratio: 2.995233e-03	ci left: 4.240832e-01	ci right 4.253558e-01	k: 985349	n:2320000
KS ci ratio: 2.255559e-01	ci left: 1.154977e-04	ci right 1.452565e-04	k: 301	n:2320000
SETD5   2320000 perm   2661 sec   (872 perm/sec)   p_kst 1.297414e-04   p_cons 4.247194e-01   p_joint 3.491379e-04

Joint ci ratio: 1.439819e-01	ci left: 2.951263e-04	ci right 3.413237e-04	k: 740	n:2330000
Cons ci ratio: 2.988922e-03	ci left: 4.240643e-01	ci right 4.253341e-01	k: 989549	n:2330000
KS ci ratio: 2.248127e-01	ci left: 1.158119e-04	ci right 1.455397e-04	k: 303	n:2330000
SETD5   2330000 perm   2682 sec   (869 perm/sec)   p_kst 1.300429e-04   p_cons 4.246991e-01   p_joint 3.175966e-04

Joint ci ratio: 1.438849e-01	ci left: 2.942770e-04	ci right 3.403077e-04	k: 741	n:2340000
Cons ci ratio: 2.982604e-03	ci left: 4.240533e-01	ci right 4.253204e-01	k: 993767	n:2340000
KS ci ratio: 2.248128e-01	ci left: 1.153170e-04	ci right 1.449178e-04	k: 303	n:2340000
SETD5   2340000 perm   2703 sec   (866 perm/sec)   p_kst 1.294872e-04   p_cons 4.246868e-01   p_joint 3.166667e-04

Joint ci ratio: 1.434986e-01	ci left: 2.946657e-04	ci right 3.406229e-04	k: 745	n:2350000
Cons ci ratio: 2.976212e-03	ci left: 4.240611e-01	ci right 4.253255e-01	k: 998029	n:2350000
KS ci ratio: 2.237116e-01	ci left: 1.160312e-04	ci right 1.456493e-04	k: 306	n:2350000
SETD5   2350000 perm   2724 sec   (863 perm/sec)   p_kst 1.302128e-04   p_cons 4.246932e-01   p_joint 3.170213e-04

Joint ci ratio: 1.431154e-01	ci left: 2.950512e-04	ci right 3.409352e-04	k: 749	n:2360000
Cons ci ratio: 2.969897e-03	ci left: 4.240629e-01	ci right 4.253246e-01	k: 1002277	n:2360000
KS ci ratio: 2.237116e-01	ci left: 1.155395e-04	ci right 1.450321e-04	k: 306	n:2360000
SETD5   2360000 perm   2744 sec   (860 perm/sec)   p_kst 1.296610e-04   p_cons 4.246936e-01   p_joint 3.173729e-04

Joint ci ratio: 1.427352e-01	ci left: 2.954337e-04	ci right 3.412447e-04	k: 753	n:2370000
Cons ci ratio: 2.963597e-03	ci left: 4.240689e-01	ci right 4.253279e-01	k: 1006535	n:2370000
KS ci ratio: 2.233482e-01	ci left: 1.154503e-04	ci right 1.448657e-04	k: 307	n:2370000
SETD5   2370000 perm   2765 sec   (857 perm/sec)   p_kst 1.295359e-04   p_cons 4.246983e-01   p_joint 3.177215e-04

Joint ci ratio: 1.424521e-01	ci left: 2.954079e-04	ci right 3.411164e-04	k: 756	n:2380000
Cons ci ratio: 2.957204e-03	ci left: 4.240967e-01	ci right 4.253531e-01	k: 1010845	n:2380000
KS ci ratio: 2.229865e-01	ci left: 1.153619e-04	ci right 1.447006e-04	k: 308	n:2380000
SETD5   2380000 perm   2786 sec   (854 perm/sec)   p_kst 1.294118e-04   p_cons 4.247248e-01   p_joint 3.176471e-04

Joint ci ratio: 1.421707e-01	ci left: 2.953825e-04	ci right 3.409890e-04	k: 759	n:2390000
Cons ci ratio: 2.951044e-03	ci left: 4.240925e-01	ci right 4.253462e-01	k: 1015079	n:2390000
KS ci ratio: 2.222683e-01	ci left: 1.156694e-04	ci right 1.449786e-04	k: 310	n:2390000
SETD5   2390000 perm   2807 sec   (851 perm/sec)   p_kst 1.297071e-04   p_cons 4.247192e-01   p_joint 3.175732e-04

Joint ci ratio: 1.420773e-01	ci left: 2.945535e-04	ci right 3.399997e-04	k: 760	n:2400000
Cons ci ratio: 2.944840e-03	ci left: 4.241020e-01	ci right 4.253532e-01	k: 1019346	n:2400000
KS ci ratio: 2.222684e-01	ci left: 1.151874e-04	ci right 1.443745e-04	k: 310	n:2400000
SETD5   2400000 perm   2828 sec   (849 perm/sec)   p_kst 1.291667e-04   p_cons 4.247275e-01   p_joint 3.166667e-04

Joint ci ratio: 1.417054e-01	ci left: 2.949322e-04	ci right 3.403076e-04	k: 764	n:2410000
Cons ci ratio: 2.938598e-03	ci left: 4.241244e-01	ci right 4.253729e-01	k: 1023644	n:2410000
KS ci ratio: 2.212039e-01	ci left: 1.158852e-04	ci right 1.450893e-04	k: 313	n:2410000
SETD5   2410000 perm   2850 sec   (845 perm/sec)   p_kst 1.298755e-04   p_cons 4.247485e-01   p_joint 3.170124e-04

Joint ci ratio: 1.415205e-01	ci left: 2.945106e-04	ci right 3.397570e-04	k: 766	n:2420000
Cons ci ratio: 2.932229e-03	ci left: 4.241742e-01	ci right 4.254202e-01	k: 1028009	n:2420000
KS ci ratio: 2.205028e-01	ci left: 1.161870e-04	ci right 1.453619e-04	k: 315	n:2420000
SETD5   2420000 perm   2877 sec   (841 perm/sec)   p_kst 1.301653e-04   p_cons 4.247971e-01   p_joint 3.165289e-04

Joint ci ratio: 1.411529e-01	ci left: 2.948865e-04	ci right 3.400631e-04	k: 770	n:2430000
Cons ci ratio: 2.926512e-03	ci left: 4.241216e-01	ci right 4.253650e-01	k: 1032126	n:2430000
KS ci ratio: 2.201547e-01	ci left: 1.160977e-04	ci right 1.451979e-04	k: 316	n:2430000
SETD5   2430000 perm   2899 sec   (838 perm/sec)   p_kst 1.300412e-04   p_cons 4.247432e-01   p_joint 3.168724e-04

Joint ci ratio: 1.407882e-01	ci left: 2.952595e-04	ci right 3.403665e-04	k: 774	n:2440000
Cons ci ratio: 2.920451e-03	ci left: 4.241325e-01	ci right 4.253734e-01	k: 1036397	n:2440000
KS ci ratio: 2.198083e-01	ci left: 1.160092e-04	ci right 1.450352e-04	k: 317	n:2440000
SETD5   2440000 perm   2921 sec   (835 perm/sec)   p_kst 1.299180e-04   p_cons 4.247529e-01   p_joint 3.172131e-04

Joint ci ratio: 1.404262e-01	ci left: 2.956296e-04	ci right 3.406673e-04	k: 778	n:2450000
Cons ci ratio: 2.914170e-03	ci left: 4.241866e-01	ci right 4.254250e-01	k: 1040774	n:2450000
KS ci ratio: 2.187787e-01	ci left: 1.166929e-04	ci right 1.457348e-04	k: 320	n:2450000
SETD5   2450000 perm   2943 sec   (833 perm/sec)   p_kst 1.306122e-04   p_cons 4.248057e-01   p_joint 3.175510e-04

Joint ci ratio: 1.402463e-01	ci left: 2.952123e-04	ci right 3.401240e-04	k: 780	n:2460000
Cons ci ratio: 2.908272e-03	ci left: 4.241826e-01	ci right 4.254184e-01	k: 1045009	n:2460000
KS ci ratio: 2.187787e-01	ci left: 1.162185e-04	ci right 1.451424e-04	k: 320	n:2460000
SETD5   2460000 perm   2964 sec   (830 perm/sec)   p_kst 1.300813e-04   p_cons 4.248004e-01   p_joint 3.170732e-04

Joint ci ratio: 1.399778e-01	ci left: 2.951891e-04	ci right 3.400042e-04	k: 783	n:2470000
Cons ci ratio: 2.902345e-03	ci left: 4.241895e-01	ci right 4.254228e-01	k: 1049271	n:2470000
KS ci ratio: 2.187788e-01	ci left: 1.157480e-04	ci right 1.445548e-04	k: 320	n:2470000
SETD5   2470000 perm   2986 sec   (827 perm/sec)   p_kst 1.295547e-04   p_cons 4.248061e-01   p_joint 3.170040e-04

Joint ci ratio: 1.397996e-01	ci left: 2.947770e-04	ci right 3.394678e-04	k: 785	n:2480000
Cons ci ratio: 2.896349e-03	ci left: 4.242141e-01	ci right 4.254449e-01	k: 1053577	n:2480000
KS ci ratio: 2.187789e-01	ci left: 1.152813e-04	ci right 1.439719e-04	k: 320	n:2480000
SETD5   2480000 perm   3009 sec   (824 perm/sec)   p_kst 1.290323e-04   p_cons 4.248294e-01   p_joint 3.165323e-04

Joint ci ratio: 1.398887e-01	ci left: 2.932056e-04	ci right 3.376889e-04	k: 784	n:2490000
Cons ci ratio: 2.890609e-03	ci left: 4.242016e-01	ci right 4.254299e-01	k: 1057791	n:2490000
KS ci ratio: 2.187789e-01	ci left: 1.148183e-04	ci right 1.433937e-04	k: 320	n:2490000
SETD5   2490000 perm   3031 sec   (822 perm/sec)   p_kst 1.285141e-04   p_cons 4.248157e-01   p_joint 3.148594e-04

Joint ci ratio: 1.394453e-01	ci left: 2.939629e-04	ci right 3.384080e-04	k: 789	n:2500000
Cons ci ratio: 2.884969e-03	ci left: 4.241779e-01	ci right 4.254038e-01	k: 1061977	n:2500000
KS ci ratio: 2.184389e-01	ci left: 1.147371e-04	ci right 1.432420e-04	k: 321	n:2500000
SETD5   2500000 perm   3053 sec   (819 perm/sec)   p_kst 1.284000e-04   p_cons 4.247908e-01   p_joint 3.156000e-04

Joint ci ratio: 1.390936e-01	ci left: 2.943298e-04	ci right 3.387088e-04	k: 793	n:2510000
Cons ci ratio: 2.879124e-03	ci left: 4.241947e-01	ci right 4.254182e-01	k: 1066264	n:2510000
KS ci ratio: 2.174284e-01	ci left: 1.154100e-04	ci right 1.439317e-04	k: 324	n:2510000
SETD5   2510000 perm   3074 sec   (816 perm/sec)   p_kst 1.290837e-04   p_cons 4.248064e-01   p_joint 3.159363e-04

Joint ci ratio: 1.389187e-01	ci left: 2.939279e-04	ci right 3.381860e-04	k: 795	n:2520000
Cons ci ratio: 2.873432e-03	ci left: 4.241916e-01	ci right 4.254126e-01	k: 1070501	n:2520000
KS ci ratio: 2.170946e-01	ci left: 1.153272e-04	ci right 1.437789e-04	k: 325	n:2520000
SETD5   2520000 perm   3097 sec   (814 perm/sec)   p_kst 1.289683e-04   p_cons 4.248020e-01   p_joint 3.154762e-04

Joint ci ratio: 1.385710e-01	ci left: 2.942923e-04	ci right 3.384852e-04	k: 799	n:2530000
Cons ci ratio: 2.867836e-03	ci left: 4.241777e-01	ci right 4.253963e-01	k: 1074711	n:2530000
KS ci ratio: 2.167624e-01	ci left: 1.152452e-04	ci right 1.436273e-04	k: 326	n:2530000
SETD5   2530000 perm   3119 sec   (811 perm/sec)   p_kst 1.288538e-04   p_cons 4.247870e-01   p_joint 3.158103e-04

Joint ci ratio: 1.383981e-01	ci left: 2.938938e-04	ci right 3.379672e-04	k: 801	n:2540000
Cons ci ratio: 2.862159e-03	ci left: 4.241833e-01	ci right 4.253995e-01	k: 1078970	n:2540000
KS ci ratio: 2.164318e-01	ci left: 1.151638e-04	ci right 1.434769e-04	k: 327	n:2540000
SETD5   2540000 perm   3141 sec   (809 perm/sec)   p_kst 1.287402e-04   p_cons 4.247913e-01   p_joint 3.153543e-04

Joint ci ratio: 1.382259e-01	ci left: 2.934984e-04	ci right 3.374533e-04	k: 803	n:2550000
Cons ci ratio: 2.856475e-03	ci left: 4.241959e-01	ci right 4.254097e-01	k: 1083247	n:2550000
KS ci ratio: 2.161026e-01	ci left: 1.150831e-04	ci right 1.433276e-04	k: 328	n:2550000
SETD5   2550000 perm   3163 sec   (806 perm/sec)   p_kst 1.286275e-04   p_cons 4.248027e-01   p_joint 3.149020e-04

Joint ci ratio: 1.381401e-01	ci left: 2.927291e-04	ci right 3.365392e-04	k: 804	n:2560000
Cons ci ratio: 2.850802e-03	ci left: 4.242123e-01	ci right 4.254238e-01	k: 1087534	n:2560000
KS ci ratio: 2.157749e-01	ci left: 1.150031e-04	ci right 1.431794e-04	k: 329	n:2560000
SETD5   2560000 perm   3186 sec   (804 perm/sec)   p_kst 1.285156e-04   p_cons 4.248180e-01   p_joint 3.140625e-04

Joint ci ratio: 1.379688e-01	ci left: 2.923414e-04	ci right 3.360348e-04	k: 806	n:2570000
Cons ci ratio: 2.845142e-03	ci left: 4.242321e-01	ci right 4.254412e-01	k: 1091830	n:2570000
KS ci ratio: 2.157750e-01	ci left: 1.145556e-04	ci right 1.426223e-04	k: 329	n:2570000
SETD5   2570000 perm   3208 sec   (801 perm/sec)   p_kst 1.280156e-04   p_cons 4.248366e-01   p_joint 3.136187e-04

Joint ci ratio: 1.375434e-01	ci left: 2.930795e-04	ci right 3.367371e-04	k: 811	n:2580000
Cons ci ratio: 2.839819e-03	ci left: 4.241994e-01	ci right 4.254062e-01	k: 1095991	n:2580000
KS ci ratio: 2.151241e-01	ci left: 1.148449e-04	ci right 1.428865e-04	k: 331	n:2580000
SETD5   2580000 perm   3231 sec   (798 perm/sec)   p_kst 1.282946e-04   p_cons 4.248027e-01   p_joint 3.143411e-04

Joint ci ratio: 1.369542e-01	ci left: 2.945578e-04	ci right 3.382324e-04	k: 818	n:2590000
Cons ci ratio: 2.834410e-03	ci left: 4.241871e-01	ci right 4.253915e-01	k: 1100204	n:2590000
KS ci ratio: 2.141586e-01	ci left: 1.154976e-04	ci right 1.435552e-04	k: 334	n:2590000
SETD5   2590000 perm   3254 sec   (796 perm/sec)   p_kst 1.289575e-04   p_cons 4.247892e-01   p_joint 3.158301e-04

Joint ci ratio: 1.364552e-01	ci left: 2.956537e-04	ci right 3.393180e-04	k: 824	n:2600000
Cons ci ratio: 2.828903e-03	ci left: 4.241971e-01	ci right 4.253992e-01	k: 1104475	n:2600000
KS ci ratio: 2.138397e-01	ci left: 1.154173e-04	ci right 1.434083e-04	k: 335	n:2600000
SETD5   2600000 perm   3278 sec   (793 perm/sec)   p_kst 1.288462e-04   p_cons 4.247981e-01   p_joint 3.169231e-04

Joint ci ratio: 1.362078e-01	ci left: 2.956311e-04	ci right 3.392066e-04	k: 827	n:2610000
Cons ci ratio: 2.823449e-03	ci left: 4.242033e-01	ci right 4.254030e-01	k: 1108736	n:2610000
KS ci ratio: 2.132060e-01	ci left: 1.157004e-04	ci right 1.436660e-04	k: 337	n:2610000
SETD5   2610000 perm   3303 sec   (790 perm/sec)   p_kst 1.291188e-04   p_cons 4.248031e-01   p_joint 3.168582e-04

Joint ci ratio: 1.357983e-01	ci left: 2.963462e-04	ci right 3.398852e-04	k: 832	n:2620000
Cons ci ratio: 2.818005e-03	ci left: 4.242132e-01	ci right 4.254107e-01	k: 1113007	n:2620000
KS ci ratio: 2.128914e-01	ci left: 1.156201e-04	ci right 1.435197e-04	k: 338	n:2620000
SETD5   2620000 perm   3326 sec   (788 perm/sec)   p_kst 1.290076e-04   p_cons 4.248118e-01   p_joint 3.175573e-04

Joint ci ratio: 1.357169e-01	ci left: 2.955867e-04	ci right 3.389860e-04	k: 833	n:2630000
Cons ci ratio: 2.812560e-03	ci left: 4.242287e-01	ci right 4.254239e-01	k: 1117293	n:2630000
KS ci ratio: 2.128914e-01	ci left: 1.151805e-04	ci right 1.429740e-04	k: 338	n:2630000
SETD5   2630000 perm   3349 sec   (785 perm/sec)   p_kst 1.285171e-04   p_cons 4.248262e-01   p_joint 3.167300e-04

Joint ci ratio: 1.354735e-01	ci left: 2.955649e-04	ci right 3.388768e-04	k: 836	n:2640000
Cons ci ratio: 2.807207e-03	ci left: 4.242335e-01	ci right 4.254265e-01	k: 1121551	n:2640000
KS ci ratio: 2.125781e-01	ci left: 1.151028e-04	ci right 1.428314e-04	k: 339	n:2640000
SETD5   2640000 perm   3372 sec   (783 perm/sec)   p_kst 1.284091e-04   p_cons 4.248299e-01   p_joint 3.166667e-04

Joint ci ratio: 1.353927e-01	ci left: 2.948141e-04	ci right 3.379882e-04	k: 837	n:2650000
Cons ci ratio: 2.801966e-03	ci left: 4.242240e-01	ci right 4.254147e-01	k: 1125771	n:2650000
KS ci ratio: 2.125782e-01	ci left: 1.146685e-04	ci right 1.422924e-04	k: 339	n:2650000
SETD5   2650000 perm   3395 sec   (781 perm/sec)   p_kst 1.279245e-04   p_cons 4.248192e-01   p_joint 3.158491e-04

Joint ci ratio: 1.362082e-01	ci left: 2.900741e-04	ci right 3.328306e-04	k: 827	n:2660000
Cons ci ratio: 2.796719e-03	ci left: 4.242209e-01	ci right 4.254093e-01	k: 1130008	n:2660000
KS ci ratio: 2.125782e-01	ci left: 1.142374e-04	ci right 1.417575e-04	k: 339	n:2660000
SETD5   2660000 perm   3418 sec   (778 perm/sec)   p_kst 1.274436e-04   p_cons 4.248150e-01   p_joint 3.109023e-04

Joint ci ratio: 1.360440e-01	ci left: 2.897112e-04	ci right 3.323586e-04	k: 829	n:2670000
Cons ci ratio: 2.791436e-03	ci left: 4.242291e-01	ci right 4.254153e-01	k: 1134275	n:2670000
KS ci ratio: 2.119557e-01	ci left: 1.145188e-04	ci right 1.420154e-04	k: 341	n:2670000
SETD5   2670000 perm   3442 sec   (776 perm/sec)   p_kst 1.277154e-04   p_cons 4.248221e-01   p_joint 3.104869e-04

Joint ci ratio: 1.357174e-01	ci left: 2.900720e-04	ci right 3.326617e-04	k: 833	n:2680000
Cons ci ratio: 2.786003e-03	ci left: 4.242689e-01	ci right 4.254529e-01	k: 1138627	n:2680000
KS ci ratio: 2.116465e-01	ci left: 1.144448e-04	ci right 1.418784e-04	k: 342	n:2680000
SETD5   2680000 perm   3465 sec   (773 perm/sec)   p_kst 1.276119e-04   p_cons 4.248608e-01   p_joint 3.108209e-04

Joint ci ratio: 1.351513e-01	ci left: 2.915077e-04	ci right 3.341153e-04	k: 840	n:2690000
Cons ci ratio: 2.780719e-03	ci left: 4.242876e-01	ci right 4.254694e-01	k: 1142923	n:2690000
KS ci ratio: 2.110321e-01	ci left: 1.147235e-04	ci right 1.421337e-04	k: 344	n:2690000
SETD5   2690000 perm   3488 sec   (771 perm/sec)   p_kst 1.278810e-04   p_cons 4.248784e-01   p_joint 3.122677e-04

Joint ci ratio: 1.349108e-01	ci left: 2.915017e-04	ci right 3.340265e-04	k: 843	n:2700000
Cons ci ratio: 2.775537e-03	ci left: 4.242936e-01	ci right 4.254732e-01	k: 1147185	n:2700000
KS ci ratio: 2.104231e-01	ci left: 1.150003e-04	ci right 1.423871e-04	k: 346	n:2700000
SETD5   2700000 perm   3511 sec   (769 perm/sec)   p_kst 1.281481e-04   p_cons 4.248833e-01   p_joint 3.122222e-04

Joint ci ratio: 1.345923e-01	ci left: 2.918523e-04	ci right 3.343197e-04	k: 847	n:2710000
Cons ci ratio: 2.770298e-03	ci left: 4.243147e-01	ci right 4.254921e-01	k: 1151488	n:2710000
KS ci ratio: 2.101205e-01	ci left: 1.149255e-04	ci right 1.422501e-04	k: 347	n:2710000
SETD5   2710000 perm   3535 sec   (767 perm/sec)   p_kst 1.280443e-04   p_cons 4.249033e-01   p_joint 3.125461e-04

Joint ci ratio: 1.341972e-01	ci left: 2.925557e-04	ci right 3.349906e-04	k: 852	n:2720000
Cons ci ratio: 2.765320e-03	ci left: 4.242948e-01	ci right 4.254701e-01	k: 1155680	n:2720000
KS ci ratio: 2.092206e-01	ci left: 1.155480e-04	ci right 1.428878e-04	k: 350	n:2720000
SETD5   2720000 perm   3559 sec   (764 perm/sec)   p_kst 1.286765e-04   p_cons 4.248824e-01   p_joint 3.132353e-04

Joint ci ratio: 1.340402e-01	ci left: 2.921921e-04	ci right 3.345207e-04	k: 854	n:2730000
Cons ci ratio: 2.760229e-03	ci left: 4.242996e-01	ci right 4.254727e-01	k: 1159939	n:2730000
KS ci ratio: 2.092206e-01	ci left: 1.151248e-04	ci right 1.423644e-04	k: 350	n:2730000
SETD5   2730000 perm   3583 sec   (762 perm/sec)   p_kst 1.282051e-04   p_cons 4.248861e-01   p_joint 3.128205e-04

Joint ci ratio: 1.336499e-01	ci left: 2.928894e-04	ci right 3.351856e-04	k: 859	n:2740000
Cons ci ratio: 2.755078e-03	ci left: 4.243201e-01	ci right 4.254910e-01	k: 1164241	n:2740000
KS ci ratio: 2.086271e-01	ci left: 1.153963e-04	ci right 1.426129e-04	k: 352	n:2740000
SETD5   2740000 perm   3606 sec   (760 perm/sec)   p_kst 1.284672e-04   p_cons 4.249055e-01   p_joint 3.135036e-04

Joint ci ratio: 1.334948e-01	ci left: 2.925274e-04	ci right 3.347184e-04	k: 861	n:2750000
Cons ci ratio: 2.749915e-03	ci left: 4.243476e-01	ci right 4.255165e-01	k: 1168563	n:2750000
KS ci ratio: 2.083322e-01	ci left: 1.153214e-04	ci right 1.424769e-04	k: 353	n:2750000
SETD5   2750000 perm   3630 sec   (758 perm/sec)   p_kst 1.283636e-04   p_cons 4.249320e-01   p_joint 3.130909e-04

Joint ci ratio: 1.340404e-01	ci left: 2.890161e-04	ci right 3.308846e-04	k: 854	n:2760000
Cons ci ratio: 2.744879e-03	ci left: 4.243576e-01	ci right 4.255244e-01	k: 1172837	n:2760000
KS ci ratio: 2.083322e-01	ci left: 1.149035e-04	ci right 1.419607e-04	k: 353	n:2760000
SETD5   2760000 perm   3655 sec   (755 perm/sec)   p_kst 1.278986e-04   p_cons 4.249409e-01   p_joint 3.094203e-04

Joint ci ratio: 1.337279e-01	ci left: 2.893684e-04	ci right 3.311824e-04	k: 858	n:2770000
Cons ci ratio: 2.739868e-03	ci left: 4.243679e-01	ci right 4.255326e-01	k: 1177112	n:2770000
KS ci ratio: 2.080386e-01	ci left: 1.148309e-04	ci right 1.418280e-04	k: 354	n:2770000
SETD5   2770000 perm   3679 sec   (753 perm/sec)   p_kst 1.277978e-04   p_cons 4.249502e-01   p_joint 3.097473e-04

Joint ci ratio: 1.334950e-01	ci left: 2.893706e-04	ci right 3.311063e-04	k: 861	n:2780000
Cons ci ratio: 2.734906e-03	ci left: 4.243742e-01	ci right 4.255367e-01	k: 1181376	n:2780000
KS ci ratio: 2.080387e-01	ci left: 1.144178e-04	ci right 1.413179e-04	k: 354	n:2780000
SETD5   2780000 perm   3703 sec   (751 perm/sec)   p_kst 1.273381e-04   p_cons 4.249554e-01   p_joint 3.097122e-04

Joint ci ratio: 1.333404e-01	ci left: 2.890263e-04	ci right 3.306603e-04	k: 863	n:2790000
Cons ci ratio: 2.729930e-03	ci left: 4.243879e-01	ci right 4.255484e-01	k: 1185661	n:2790000
KS ci ratio: 2.077463e-01	ci left: 1.143475e-04	ci right 1.411884e-04	k: 355	n:2790000
SETD5   2790000 perm   3727 sec   (749 perm/sec)   p_kst 1.272401e-04   p_cons 4.249681e-01   p_joint 3.093190e-04

Joint ci ratio: 1.330328e-01	ci left: 2.893750e-04	ci right 3.309555e-04	k: 867	n:2800000
Cons ci ratio: 2.724917e-03	ci left: 4.244130e-01	ci right 4.255714e-01	k: 1189978	n:2800000
KS ci ratio: 2.074551e-01	ci left: 1.142777e-04	ci right 1.410598e-04	k: 356	n:2800000
SETD5   2800000 perm   3752 sec   (746 perm/sec)   p_kst 1.271429e-04   p_cons 4.249921e-01   p_joint 3.096429e-04

Joint ci ratio: 1.326513e-01	ci left: 2.900655e-04	ci right 3.316162e-04	k: 872	n:2810000
Cons ci ratio: 2.720093e-03	ci left: 4.244087e-01	ci right 4.255651e-01	k: 1194213	n:2810000
KS ci ratio: 2.065889e-01	ci left: 1.148833e-04	ci right 1.416807e-04	k: 359	n:2810000
SETD5   2810000 perm   3776 sec   (744 perm/sec)   p_kst 1.277580e-04   p_cons 4.249868e-01   p_joint 3.103203e-04

Joint ci ratio: 1.324239e-01	ci left: 2.900654e-04	ci right 3.315393e-04	k: 875	n:2820000
Cons ci ratio: 2.715402e-03	ci left: 4.243853e-01	ci right 4.255396e-01	k: 1198394	n:2820000
KS ci ratio: 2.060174e-01	ci left: 1.151485e-04	ci right 1.419241e-04	k: 361	n:2820000
SETD5   2820000 perm   3801 sec   (742 perm/sec)   p_kst 1.280142e-04   p_cons 4.249624e-01   p_joint 3.102837e-04

Joint ci ratio: 1.322730e-01	ci left: 2.897238e-04	ci right 3.310979e-04	k: 877	n:2830000
Cons ci ratio: 2.710523e-03	ci left: 4.244003e-01	ci right 4.255525e-01	k: 1202683	n:2830000
KS ci ratio: 2.057334e-01	ci left: 1.150767e-04	ci right 1.417942e-04	k: 362	n:2830000
SETD5   2830000 perm   3826 sec   (740 perm/sec)   p_kst 1.279152e-04   p_cons 4.249763e-01   p_joint 3.098940e-04

Joint ci ratio: 1.318980e-01	ci left: 2.904060e-04	ci right 3.317508e-04	k: 882	n:2840000
Cons ci ratio: 2.705690e-03	ci left: 4.244116e-01	ci right 4.255618e-01	k: 1206962	n:2840000
KS ci ratio: 2.054506e-01	ci left: 1.150055e-04	ci right 1.416651e-04	k: 363	n:2840000
SETD5   2840000 perm   3851 sec   (738 perm/sec)   p_kst 1.278169e-04   p_cons 4.249866e-01   p_joint 3.105634e-04

Joint ci ratio: 1.314521e-01	ci left: 2.914230e-04	ci right 3.327613e-04	k: 888	n:2850000
Cons ci ratio: 2.700989e-03	ci left: 4.244035e-01	ci right 4.255517e-01	k: 1211186	n:2850000
KS ci ratio: 2.051690e-01	ci left: 1.149348e-04	ci right 1.415369e-04	k: 364	n:2850000
SETD5   2850000 perm   3876 sec   (735 perm/sec)   p_kst 1.277193e-04   p_cons 4.249775e-01   p_joint 3.115789e-04

Joint ci ratio: 1.312308e-01	ci left: 2.914185e-04	ci right 3.326812e-04	k: 891	n:2860000
Cons ci ratio: 2.696195e-03	ci left: 4.244168e-01	ci right 4.255630e-01	k: 1215471	n:2860000
KS ci ratio: 2.046092e-01	ci left: 1.151964e-04	ci right 1.417772e-04	k: 366	n:2860000
SETD5   2860000 perm   3900 sec   (733 perm/sec)   p_kst 1.279720e-04   p_cons 4.249899e-01   p_joint 3.115385e-04

Joint ci ratio: 1.310840e-01	ci left: 2.910771e-04	ci right 3.322418e-04	k: 893	n:2870000
Cons ci ratio: 2.691503e-03	ci left: 4.244161e-01	ci right 4.255603e-01	k: 1219716	n:2870000
KS ci ratio: 2.040539e-01	ci left: 1.154562e-04	ci right 1.420156e-04	k: 368	n:2870000
SETD5   2870000 perm   3925 sec   (731 perm/sec)   p_kst 1.282230e-04   p_cons 4.249882e-01   p_joint 3.111498e-04

Joint ci ratio: 1.308646e-01	ci left: 2.910739e-04	ci right 3.321639e-04	k: 896	n:2880000
Cons ci ratio: 2.686977e-03	ci left: 4.243897e-01	ci right 4.255319e-01	k: 1223887	n:2880000
KS ci ratio: 2.040539e-01	ci left: 1.150553e-04	ci right 1.415225e-04	k: 368	n:2880000
SETD5   2880000 perm   3951 sec   (729 perm/sec)   p_kst 1.277778e-04   p_cons 4.249608e-01   p_joint 3.111111e-04

Joint ci ratio: 1.305738e-01	ci left: 2.914056e-04	ci right 3.324439e-04	k: 900	n:2890000
Cons ci ratio: 2.682315e-03	ci left: 4.243923e-01	ci right 4.255325e-01	k: 1228141	n:2890000
KS ci ratio: 2.037780e-01	ci left: 1.149856e-04	ci right 1.413965e-04	k: 369	n:2890000
SETD5   2890000 perm   3976 sec   (727 perm/sec)   p_kst 1.276817e-04   p_cons 4.249623e-01   p_joint 3.114187e-04

Joint ci ratio: 1.303569e-01	ci left: 2.914015e-04	ci right 3.323658e-04	k: 903	n:2900000
Cons ci ratio: 2.677669e-03	ci left: 4.243965e-01	ci right 4.255347e-01	k: 1232400	n:2900000
KS ci ratio: 2.032295e-01	ci left: 1.152436e-04	ci right 1.416337e-04	k: 371	n:2900000
SETD5   2900000 perm   4001 sec   (725 perm/sec)   p_kst 1.279310e-04   p_cons 4.249655e-01   p_joint 3.113793e-04

Joint ci ratio: 1.303570e-01	ci left: 2.904001e-04	ci right 3.312236e-04	k: 903	n:2910000
Cons ci ratio: 2.672840e-03	ci left: 4.244385e-01	ci right 4.255748e-01	k: 1236769	n:2910000
KS ci ratio: 2.032295e-01	ci left: 1.148476e-04	ci right 1.411470e-04	k: 371	n:2910000
SETD5   2910000 perm   4026 sec   (723 perm/sec)   p_kst 1.274914e-04   p_cons 4.250065e-01   p_joint 3.103093e-04

Joint ci ratio: 1.318239e-01	ci left: 2.827808e-04	ci right 3.230156e-04	k: 883	n:2920000
Cons ci ratio: 2.668104e-03	ci left: 4.244678e-01	ci right 4.256022e-01	k: 1241102	n:2920000
KS ci ratio: 2.032296e-01	ci left: 1.144542e-04	ci right 1.406636e-04	k: 371	n:2920000
SETD5   2920000 perm   4051 sec   (721 perm/sec)   p_kst 1.270548e-04   p_cons 4.250349e-01   p_joint 3.023973e-04

Joint ci ratio: 1.317494e-01	ci left: 2.821457e-04	ci right 3.222657e-04	k: 884	n:2930000
Cons ci ratio: 2.663667e-03	ci left: 4.244468e-01	ci right 4.255793e-01	k: 1245288	n:2930000
KS ci ratio: 2.029570e-01	ci left: 1.143875e-04	ci right 1.405421e-04	k: 372	n:2930000
SETD5   2930000 perm   4076 sec   (719 perm/sec)   p_kst 1.269625e-04   p_cons 4.250130e-01   p_joint 3.017065e-04

Joint ci ratio: 1.313788e-01	ci left: 2.828307e-04	ci right 3.229262e-04	k: 889	n:2940000
Cons ci ratio: 2.659065e-03	ci left: 4.244603e-01	ci right 4.255908e-01	k: 1249575	n:2940000
KS ci ratio: 2.021456e-01	ci left: 1.149671e-04	ci right 1.411362e-04	k: 375	n:2940000
SETD5   2940000 perm   4104 sec   (716 perm/sec)   p_kst 1.275510e-04   p_cons 4.250255e-01   p_joint 3.023810e-04

Joint ci ratio: 1.311579e-01	ci left: 2.828555e-04	ci right 3.228818e-04	k: 892	n:2950000
Cons ci ratio: 2.654641e-03	ci left: 4.244453e-01	ci right 4.255738e-01	k: 1253778	n:2950000
KS ci ratio: 2.016101e-01	ci left: 1.152211e-04	ci right 1.413700e-04	k: 377	n:2950000
SETD5   2950000 perm   4129 sec   (714 perm/sec)   p_kst 1.277966e-04   p_cons 4.250095e-01   p_joint 3.023729e-04

Joint ci ratio: 1.308651e-01	ci left: 2.832070e-04	ci right 3.231866e-04	k: 896	n:2960000
Cons ci ratio: 2.650034e-03	ci left: 4.244682e-01	ci right 4.255948e-01	k: 1258093	n:2960000
KS ci ratio: 2.016101e-01	ci left: 1.148319e-04	ci right 1.408924e-04	k: 377	n:2960000
SETD5   2960000 perm   4155 sec   (712 perm/sec)   p_kst 1.273649e-04   p_cons 4.250314e-01   p_joint 3.027027e-04

Joint ci ratio: 1.305019e-01	ci left: 2.838819e-04	ci right 3.238369e-04	k: 901	n:2970000
Cons ci ratio: 2.645610e-03	ci left: 4.244616e-01	ci right 4.255864e-01	k: 1262321	n:2970000
KS ci ratio: 2.010789e-01	ci left: 1.150847e-04	ci right 1.411253e-04	k: 379	n:2970000
SETD5   2970000 perm   4180 sec   (711 perm/sec)   p_kst 1.276094e-04   p_cons 4.250239e-01   p_joint 3.033670e-04

Joint ci ratio: 1.302135e-01	ci left: 2.842278e-04	ci right 3.241363e-04	k: 905	n:2980000
Cons ci ratio: 2.641079e-03	ci left: 4.244789e-01	ci right 4.256018e-01	k: 1266620	n:2980000
KS ci ratio: 2.008148e-01	ci left: 1.150172e-04	ci right 1.410041e-04	k: 380	n:2980000
SETD5   2980000 perm   4205 sec   (709 perm/sec)   p_kst 1.275168e-04   p_cons 4.250403e-01   p_joint 3.036913e-04

Joint ci ratio: 1.300700e-01	ci left: 2.839243e-04	ci right 3.237429e-04	k: 907	n:2990000
Cons ci ratio: 2.636710e-03	ci left: 4.244703e-01	ci right 4.255913e-01	k: 1270842	n:2990000
KS ci ratio: 2.005518e-01	ci left: 1.149501e-04	ci right 1.408838e-04	k: 381	n:2990000
SETD5   2990000 perm   4231 sec   (707 perm/sec)   p_kst 1.274247e-04   p_cons 4.250308e-01   p_joint 3.033445e-04

Joint ci ratio: 1.297844e-01	ci left: 2.842679e-04	ci right 3.240404e-04	k: 911	n:3000000
Cons ci ratio: 2.632335e-03	ci left: 4.244668e-01	ci right 4.255860e-01	k: 1275079	n:3000000
KS ci ratio: 2.002898e-01	ci left: 1.148836e-04	ci right 1.407642e-04	k: 382	n:3000000
SETD5   3000000 perm   4256 sec   (705 perm/sec)   p_kst 1.273333e-04   p_cons 4.250263e-01   p_joint 3.036667e-04

Joint ci ratio: 1.296424e-01	ci left: 2.839664e-04	ci right 3.236498e-04	k: 913	n:3010000
Cons ci ratio: 2.627847e-03	ci left: 4.244886e-01	ci right 4.256059e-01	k: 1279392	n:3010000
KS ci ratio: 2.000289e-01	ci left: 1.148175e-04	ci right 1.406454e-04	k: 383	n:3010000
SETD5   3010000 perm   4282 sec   (703 perm/sec)   p_kst 1.272425e-04   p_cons 4.250472e-01   p_joint 3.033223e-04

Joint ci ratio: 1.295008e-01	ci left: 2.836669e-04	ci right 3.232618e-04	k: 915	n:3020000
Cons ci ratio: 2.623485e-03	ci left: 4.244910e-01	ci right 4.256065e-01	k: 1283647	n:3020000
KS ci ratio: 1.997689e-01	ci left: 1.147518e-04	ci right 1.405274e-04	k: 384	n:3020000
SETD5   3020000 perm   4309 sec   (701 perm/sec)   p_kst 1.271523e-04   p_cons 4.250487e-01   p_joint 3.029801e-04

Joint ci ratio: 1.291487e-01	ci left: 2.843275e-04	ci right 3.238985e-04	k: 920	n:3030000
Cons ci ratio: 2.619011e-03	ci left: 4.245182e-01	ci right 4.256318e-01	k: 1287977	n:3030000
KS ci ratio: 1.992520e-01	ci left: 1.150002e-04	ci right 1.407566e-04	k: 386	n:3030000
SETD5   3030000 perm   4334 sec   (699 perm/sec)   p_kst 1.273927e-04   p_cons 4.250749e-01   p_joint 3.036304e-04

Joint ci ratio: 1.290088e-01	ci left: 2.840288e-04	ci right 3.235122e-04	k: 922	n:3040000
Cons ci ratio: 2.614724e-03	ci left: 4.245146e-01	ci right 4.256263e-01	k: 1292214	n:3040000
KS ci ratio: 1.989951e-01	ci left: 1.149345e-04	ci right 1.406389e-04	k: 387	n:3040000
SETD5   3040000 perm   4360 sec   (697 perm/sec)   p_kst 1.273026e-04   p_cons 4.250704e-01   p_joint 3.032895e-04

Joint ci ratio: 1.289390e-01	ci left: 2.834149e-04	ci right 3.227899e-04	k: 923	n:3050000
Cons ci ratio: 2.610509e-03	ci left: 4.245015e-01	ci right 4.256114e-01	k: 1296422	n:3050000
KS ci ratio: 1.987392e-01	ci left: 1.148692e-04	ci right 1.405219e-04	k: 388	n:3050000
SETD5   3050000 perm   4387 sec   (695 perm/sec)   p_kst 1.272131e-04   p_cons 4.250564e-01   p_joint 3.026230e-04

Joint ci ratio: 1.333423e-01	ci left: 2.635237e-04	ci right 3.014847e-04	k: 863	n:3060000
Cons ci ratio: 2.606356e-03	ci left: 4.244807e-01	ci right 4.255888e-01	k: 1300606	n:3060000
KS ci ratio: 1.984842e-01	ci left: 1.148043e-04	ci right 1.404058e-04	k: 389	n:3060000
SETD5   3060000 perm   4420 sec   (692 perm/sec)   p_kst 1.271242e-04   p_cons 4.250346e-01   p_joint 2.820261e-04

Joint ci ratio: 1.333423e-01	ci left: 2.626654e-04	ci right 3.005027e-04	k: 863	n:3070000
Cons ci ratio: 2.602148e-03	ci left: 4.244740e-01	ci right 4.255803e-01	k: 1304833	n:3070000
KS ci ratio: 1.984843e-01	ci left: 1.144304e-04	ci right 1.399484e-04	k: 389	n:3070000
SETD5   3070000 perm   4446 sec   (691 perm/sec)   p_kst 1.267101e-04   p_cons 4.250270e-01   p_joint 2.811075e-04

Joint ci ratio: 1.330347e-01	ci left: 2.630680e-04	ci right 3.008690e-04	k: 867	n:3080000
Cons ci ratio: 2.597833e-03	ci left: 4.244913e-01	ci right 4.255958e-01	k: 1309134	n:3080000
KS ci ratio: 1.979773e-01	ci left: 1.146760e-04	ci right 1.401756e-04	k: 391	n:3080000
SETD5   3080000 perm   4472 sec   (689 perm/sec)   p_kst 1.269481e-04   p_cons 4.250435e-01   p_joint 2.814935e-04

Joint ci ratio: 1.326531e-01	ci left: 2.637810e-04	ci right 3.015671e-04	k: 872	n:3090000
Cons ci ratio: 2.593496e-03	ci left: 4.245167e-01	ci right 4.256194e-01	k: 1313460	n:3090000
KS ci ratio: 1.967265e-01	ci left: 1.158430e-04	ci right 1.414199e-04	k: 396	n:3090000
SETD5   3090000 perm   4498 sec   (687 perm/sec)   p_kst 1.281553e-04   p_cons 4.250680e-01   p_joint 2.822006e-04

Joint ci ratio: 1.325015e-01	ci left: 2.635538e-04	ci right 3.012609e-04	k: 874	n:3100000
Cons ci ratio: 2.589275e-03	ci left: 4.245241e-01	ci right 4.256251e-01	k: 1317731	n:3100000
KS ci ratio: 1.962328e-01	ci left: 1.160828e-04	ci right 1.416406e-04	k: 398	n:3100000
SETD5   3100000 perm   4526 sec   (685 perm/sec)   p_kst 1.283871e-04   p_cons 4.250745e-01   p_joint 2.819355e-04

Joint ci ratio: 1.321996e-01	ci left: 2.639500e-04	ci right 3.016209e-04	k: 878	n:3110000
Cons ci ratio: 2.585127e-03	ci left: 4.245215e-01	ci right 4.256207e-01	k: 1321971	n:3110000
KS ci ratio: 1.959874e-01	ci left: 1.160153e-04	ci right 1.415224e-04	k: 399	n:3110000
SETD5   3110000 perm   4552 sec   (683 perm/sec)   p_kst 1.282958e-04   p_cons 4.250711e-01   p_joint 2.823151e-04

Joint ci ratio: 1.319746e-01	ci left: 2.640338e-04	ci right 3.016475e-04	k: 881	n:3120000
Cons ci ratio: 2.580903e-03	ci left: 4.245373e-01	ci right 4.256347e-01	k: 1326268	n:3120000
KS ci ratio: 1.957428e-01	ci left: 1.159482e-04	ci right 1.414050e-04	k: 400	n:3120000
SETD5   3120000 perm   4579 sec   (681 perm/sec)   p_kst 1.282051e-04   p_cons 4.250859e-01   p_joint 2.823718e-04

Joint ci ratio: 1.317507e-01	ci left: 2.641171e-04	ci right 3.016738e-04	k: 884	n:3130000
Cons ci ratio: 2.576827e-03	ci left: 4.245286e-01	ci right 4.256243e-01	k: 1330489	n:3130000
KS ci ratio: 1.952565e-01	ci left: 1.161855e-04	ci right 1.416235e-04	k: 402	n:3130000
SETD5   3130000 perm   4606 sec   (680 perm/sec)   p_kst 1.284345e-04   p_cons 4.250764e-01   p_joint 2.824281e-04

Joint ci ratio: 1.316764e-01	ci left: 2.635839e-04	ci right 3.010420e-04	k: 885	n:3140000
Cons ci ratio: 2.572633e-03	ci left: 4.245461e-01	ci right 4.256400e-01	k: 1334792	n:3140000
KS ci ratio: 1.952565e-01	ci left: 1.158155e-04	ci right 1.411725e-04	k: 402	n:3140000
SETD5   3140000 perm   4633 sec   (678 perm/sec)   p_kst 1.280255e-04   p_cons 4.250930e-01   p_joint 2.818471e-04

Joint ci ratio: 1.315280e-01	ci left: 2.633611e-04	ci right 3.007422e-04	k: 887	n:3150000
Cons ci ratio: 2.568564e-03	ci left: 4.245435e-01	ci right 4.256357e-01	k: 1339032	n:3150000
KS ci ratio: 1.947738e-01	ci left: 1.160517e-04	ci right 1.413902e-04	k: 404	n:3150000
SETD5   3150000 perm   4660 sec   (676 perm/sec)   p_kst 1.282540e-04   p_cons 4.250895e-01   p_joint 2.815873e-04

Joint ci ratio: 1.313064e-01	ci left: 2.634459e-04	ci right 3.007710e-04	k: 890	n:3160000
Cons ci ratio: 2.564568e-03	ci left: 4.245308e-01	ci right 4.256212e-01	k: 1343240	n:3160000
KS ci ratio: 1.940564e-01	ci left: 1.165876e-04	ci right 1.419382e-04	k: 407	n:3160000
SETD5   3160000 perm   4687 sec   (674 perm/sec)   p_kst 1.287975e-04   p_cons 4.250759e-01   p_joint 2.816456e-04

Joint ci ratio: 1.311593e-01	ci left: 2.632250e-04	ci right 3.004738e-04	k: 892	n:3170000
Cons ci ratio: 2.560521e-03	ci left: 4.245314e-01	ci right 4.256201e-01	k: 1347490	n:3170000
KS ci ratio: 1.940564e-01	ci left: 1.162198e-04	ci right 1.414905e-04	k: 407	n:3170000
SETD5   3170000 perm   4714 sec   (673 perm/sec)   p_kst 1.283912e-04   p_cons 4.250757e-01   p_joint 2.813880e-04

Joint ci ratio: 1.308665e-01	ci left: 2.636139e-04	ci right 3.008280e-04	k: 896	n:3180000
Cons ci ratio: 2.556599e-03	ci left: 4.245119e-01	ci right 4.255989e-01	k: 1351676	n:3180000
KS ci ratio: 1.938190e-01	ci left: 1.161536e-04	ci right 1.413753e-04	k: 408	n:3180000
SETD5   3180000 perm   4742 sec   (671 perm/sec)   p_kst 1.283019e-04   p_cons 4.250553e-01   p_joint 2.817610e-04

Joint ci ratio: 1.307937e-01	ci left: 2.630907e-04	ci right 3.002087e-04	k: 897	n:3190000
Cons ci ratio: 2.552656e-03	ci left: 4.244997e-01	ci right 4.255850e-01	k: 1355885	n:3190000
KS ci ratio: 1.938191e-01	ci left: 1.157894e-04	ci right 1.409321e-04	k: 408	n:3190000
SETD5   3190000 perm   4769 sec   (669 perm/sec)   p_kst 1.278997e-04   p_cons 4.250423e-01   p_joint 2.811912e-04

Joint ci ratio: 1.305033e-01	ci left: 2.634777e-04	ci right 3.005614e-04	k: 901	n:3200000
Cons ci ratio: 2.548633e-03	ci left: 4.245067e-01	ci right 4.255903e-01	k: 1360155	n:3200000
KS ci ratio: 1.935826e-01	ci left: 1.157250e-04	ci right 1.408193e-04	k: 409	n:3200000
SETD5   3200000 perm   4796 sec   (667 perm/sec)   p_kst 1.278125e-04   p_cons 4.250484e-01   p_joint 2.815625e-04

Joint ci ratio: 1.300713e-01	ci left: 2.644652e-04	ci right 3.015551e-04	k: 907	n:3210000
Cons ci ratio: 2.544758e-03	ci left: 4.244887e-01	ci right 4.255706e-01	k: 1364345	n:3210000
KS ci ratio: 1.931121e-01	ci left: 1.159573e-04	ci right 1.410338e-04	k: 411	n:3210000
SETD5   3210000 perm   4823 sec   (666 perm/sec)   p_kst 1.280374e-04   p_cons 4.250296e-01   p_joint 2.825545e-04

Joint ci ratio: 1.297858e-01	ci left: 2.648457e-04	ci right 3.019012e-04	k: 911	n:3220000
Cons ci ratio: 2.540796e-03	ci left: 4.244910e-01	ci right 4.255712e-01	k: 1368600	n:3220000
KS ci ratio: 1.926451e-01	ci left: 1.161883e-04	ci right 1.412469e-04	k: 413	n:3220000
SETD5   3220000 perm   4850 sec   (664 perm/sec)   p_kst 1.282609e-04   p_cons 4.250311e-01   p_joint 2.829193e-04

Joint ci ratio: 1.296437e-01	ci left: 2.646249e-04	ci right 3.016058e-04	k: 913	n:3230000
Cons ci ratio: 2.536857e-03	ci left: 4.244924e-01	ci right 4.255709e-01	k: 1372852	n:3230000
KS ci ratio: 1.921814e-01	ci left: 1.164180e-04	ci right 1.414586e-04	k: 415	n:3230000
SETD5   3230000 perm   4878 sec   (662 perm/sec)   p_kst 1.284830e-04   p_cons 4.250316e-01   p_joint 2.826625e-04

Joint ci ratio: 1.295729e-01	ci left: 2.641067e-04	ci right 3.009935e-04	k: 914	n:3240000
Cons ci ratio: 2.533005e-03	ci left: 4.244805e-01	ci right 4.255573e-01	k: 1377061	n:3240000
KS ci ratio: 1.921814e-01	ci left: 1.160587e-04	ci right 1.410220e-04	k: 415	n:3240000
SETD5   3240000 perm   4906 sec   (660 perm/sec)   p_kst 1.280864e-04   p_cons 4.250188e-01   p_joint 2.820988e-04

Joint ci ratio: 1.295022e-01	ci left: 2.635918e-04	ci right 3.003851e-04	k: 915	n:3250000
Cons ci ratio: 2.529059e-03	ci left: 4.244902e-01	ci right 4.255654e-01	k: 1381340	n:3250000
KS ci ratio: 1.919509e-01	ci left: 1.159945e-04	ci right 1.409105e-04	k: 416	n:3250000
SETD5   3250000 perm   4934 sec   (659 perm/sec)   p_kst 1.280000e-04   p_cons 4.250277e-01   p_joint 2.815385e-04

Joint ci ratio: 1.294316e-01	ci left: 2.630801e-04	ci right 2.997803e-04	k: 916	n:3260000
Cons ci ratio: 2.525197e-03	ci left: 4.244872e-01	ci right 4.255608e-01	k: 1385578	n:3260000
KS ci ratio: 1.917211e-01	ci left: 1.159307e-04	ci right 1.407997e-04	k: 417	n:3260000
SETD5   3260000 perm   4962 sec   (657 perm/sec)   p_kst 1.279141e-04   p_cons 4.250239e-01   p_joint 2.809816e-04

Joint ci ratio: 1.293611e-01	ci left: 2.625715e-04	ci right 2.991793e-04	k: 917	n:3270000
Cons ci ratio: 2.521256e-03	ci left: 4.245029e-01	ci right 4.255749e-01	k: 1389877	n:3270000
KS ci ratio: 1.917212e-01	ci left: 1.155761e-04	ci right 1.403692e-04	k: 417	n:3270000
SETD5   3270000 perm   4990 sec   (655 perm/sec)   p_kst 1.275229e-04   p_cons 4.250388e-01   p_joint 2.804281e-04

Joint ci ratio: 1.290802e-01	ci left: 2.629510e-04	ci right 2.995261e-04	k: 921	n:3280000
Cons ci ratio: 2.517467e-03	ci left: 4.244927e-01	ci right 4.255629e-01	k: 1394091	n:3280000
KS ci ratio: 1.912641e-01	ci left: 1.158043e-04	ci right 1.405802e-04	k: 419	n:3280000
SETD5   3280000 perm   5018 sec   (654 perm/sec)   p_kst 1.277439e-04   p_cons 4.250277e-01   p_joint 2.807927e-04

Joint ci ratio: 1.289404e-01	ci left: 2.627401e-04	ci right 2.992432e-04	k: 923	n:3290000
Cons ci ratio: 2.513641e-03	ci left: 4.244928e-01	ci right 4.255614e-01	k: 1398339	n:3290000
KS ci ratio: 1.910369e-01	ci left: 1.157417e-04	ci right 1.404714e-04	k: 420	n:3290000
SETD5   3290000 perm   5046 sec   (652 perm/sec)   p_kst 1.276596e-04   p_cons 4.250271e-01   p_joint 2.805471e-04

Joint ci ratio: 1.288011e-01	ci left: 2.625304e-04	ci right 2.989619e-04	k: 925	n:3300000
Cons ci ratio: 2.509830e-03	ci left: 4.244935e-01	ci right 4.255606e-01	k: 1402589	n:3300000
KS ci ratio: 1.910369e-01	ci left: 1.153910e-04	ci right 1.400457e-04	k: 420	n:3300000
SETD5   3300000 perm   5075 sec   (650 perm/sec)   p_kst 1.272727e-04   p_cons 4.250270e-01   p_joint 2.803030e-04

Joint ci ratio: 1.285930e-01	ci left: 2.626144e-04	ci right 2.989942e-04	k: 928	n:3310000
Cons ci ratio: 2.506038e-03	ci left: 4.244939e-01	ci right 4.255594e-01	k: 1406838	n:3310000
KS ci ratio: 1.910369e-01	ci left: 1.150424e-04	ci right 1.396226e-04	k: 420	n:3310000
SETD5   3310000 perm   5103 sec   (649 perm/sec)   p_kst 1.268882e-04   p_cons 4.250266e-01   p_joint 2.803625e-04

Joint ci ratio: 1.283858e-01	ci left: 2.626980e-04	ci right 2.990263e-04	k: 931	n:3320000
Cons ci ratio: 2.502178e-03	ci left: 4.245109e-01	ci right 4.255747e-01	k: 1411142	n:3320000
KS ci ratio: 1.903598e-01	ci left: 1.155563e-04	ci right 1.401487e-04	k: 423	n:3320000
SETD5   3320000 perm   5132 sec   (647 perm/sec)   p_kst 1.274096e-04   p_cons 4.250428e-01   p_joint 2.804217e-04

Joint ci ratio: 1.364600e-01	ci left: 2.308402e-04	ci right 2.649336e-04	k: 824	n:3330000
Cons ci ratio: 2.498391e-03	ci left: 4.245170e-01	ci right 4.255792e-01	k: 1415410	n:3330000
KS ci ratio: 1.899124e-01	ci left: 1.157813e-04	ci right 1.403570e-04	k: 425	n:3330000
SETD5   3330000 perm   5161 sec   (645 perm/sec)   p_kst 1.276276e-04   p_cons 4.250480e-01   p_joint 2.474474e-04

Joint ci ratio: 1.364600e-01	ci left: 2.301490e-04	ci right 2.641404e-04	k: 824	n:3340000
Cons ci ratio: 2.494810e-03	ci left: 4.244862e-01	ci right 4.255468e-01	k: 1419555	n:3340000
KS ci ratio: 1.894682e-01	ci left: 1.160051e-04	ci right 1.405640e-04	k: 427	n:3340000
SETD5   3340000 perm   5189 sec   (644 perm/sec)   p_kst 1.278443e-04   p_cons 4.250165e-01   p_joint 2.467066e-04

Joint ci ratio: 1.359664e-01	ci left: 2.311920e-04	ci right 2.652040e-04	k: 830	n:3350000
Cons ci ratio: 2.491198e-03	ci left: 4.244646e-01	ci right 4.255236e-01	k: 1423730	n:3350000
KS ci ratio: 1.890270e-01	ci left: 1.162275e-04	ci right 1.407697e-04	k: 429	n:3350000
SETD5   3350000 perm   5217 sec   (642 perm/sec)   p_kst 1.280597e-04   p_cons 4.249940e-01   p_joint 2.477612e-04

Joint ci ratio: 1.358847e-01	ci left: 2.307915e-04	ci right 2.647224e-04	k: 831	n:3360000
Cons ci ratio: 2.487473e-03	ci left: 4.244684e-01	ci right 4.255258e-01	k: 1427990	n:3360000
KS ci ratio: 1.890271e-01	ci left: 1.158816e-04	ci right 1.403507e-04	k: 429	n:3360000
SETD5   3360000 perm   5246 sec   (640 perm/sec)   p_kst 1.276786e-04   p_cons 4.249970e-01   p_joint 2.473214e-04

Joint ci ratio: 1.358848e-01	ci left: 2.301066e-04	ci right 2.639369e-04	k: 831	n:3370000
Cons ci ratio: 2.483876e-03	ci left: 4.244502e-01	ci right 4.255060e-01	k: 1432176	n:3370000
KS ci ratio: 1.888077e-01	ci left: 1.158204e-04	ci right 1.402450e-04	k: 430	n:3370000
SETD5   3370000 perm   5275 sec   (639 perm/sec)   p_kst 1.275964e-04   p_cons 4.249780e-01   p_joint 2.465875e-04

Joint ci ratio: 1.358032e-01	ci left: 2.297116e-04	ci right 2.634619e-04	k: 832	n:3380000
Cons ci ratio: 2.480287e-03	ci left: 4.244336e-01	ci right 4.254879e-01	k: 1436367	n:3380000
KS ci ratio: 1.885890e-01	ci left: 1.157596e-04	ci right 1.401399e-04	k: 431	n:3380000
SETD5   3380000 perm   5304 sec   (637 perm/sec)   p_kst 1.275148e-04   p_cons 4.249607e-01   p_joint 2.461538e-04

Joint ci ratio: 1.355593e-01	ci left: 2.298889e-04	ci right 2.635997e-04	k: 835	n:3390000
Cons ci ratio: 2.476586e-03	ci left: 4.244421e-01	ci right 4.254949e-01	k: 1440643	n:3390000
KS ci ratio: 1.883711e-01	ci left: 1.156992e-04	ci right 1.400354e-04	k: 432	n:3390000
SETD5   3390000 perm   5333 sec   (636 perm/sec)   p_kst 1.274336e-04   p_cons 4.249684e-01   p_joint 2.463127e-04

Joint ci ratio: 1.354783e-01	ci left: 2.294969e-04	ci right 2.631285e-04	k: 836	n:3400000
Cons ci ratio: 2.472974e-03	ci left: 4.244365e-01	ci right 4.254877e-01	k: 1444871	n:3400000
KS ci ratio: 1.879376e-01	ci left: 1.159195e-04	ci right 1.402394e-04	k: 434	n:3400000
SETD5   3400000 perm   5362 sec   (634 perm/sec)   p_kst 1.276471e-04   p_cons 4.249621e-01   p_joint 2.458824e-04

Joint ci ratio: 1.352362e-01	ci left: 2.296739e-04	ci right 2.632664e-04	k: 839	n:3410000
Cons ci ratio: 2.469420e-03	ci left: 4.244225e-01	ci right 4.254721e-01	k: 1449070	n:3410000
KS ci ratio: 1.872928e-01	ci left: 1.164180e-04	ci right 1.407492e-04	k: 437	n:3410000
SETD5   3410000 perm   5391 sec   (633 perm/sec)   p_kst 1.281525e-04   p_cons 4.249472e-01   p_joint 2.460411e-04

Joint ci ratio: 1.351558e-01	ci left: 2.292848e-04	ci right 2.627989e-04	k: 840	n:3420000
Cons ci ratio: 2.465852e-03	ci left: 4.244143e-01	ci right 4.254624e-01	k: 1453289	n:3420000
KS ci ratio: 1.872928e-01	ci left: 1.160776e-04	ci right 1.403377e-04	k: 437	n:3420000
SETD5   3420000 perm   5420 sec   (631 perm/sec)   p_kst 1.277778e-04   p_cons 4.249383e-01   p_joint 2.456140e-04

Joint ci ratio: 1.349954e-01	ci left: 2.291798e-04	ci right 2.626355e-04	k: 842	n:3430000
Cons ci ratio: 2.462273e-03	ci left: 4.244115e-01	ci right 4.254580e-01	k: 1457526	n:3430000
KS ci ratio: 1.868667e-01	ci left: 1.162949e-04	ci right 1.405389e-04	k: 439	n:3430000
SETD5   3430000 perm   5449 sec   (629 perm/sec)   p_kst 1.279883e-04   p_cons 4.249347e-01   p_joint 2.454810e-04

Joint ci ratio: 1.348355e-01	ci left: 2.290753e-04	ci right 2.624731e-04	k: 844	n:3440000
Cons ci ratio: 2.458662e-03	ci left: 4.244182e-01	ci right 4.254633e-01	k: 1461796	n:3440000
KS ci ratio: 1.864434e-01	ci left: 1.165111e-04	ci right 1.407389e-04	k: 441	n:3440000
SETD5   3440000 perm   5478 sec   (628 perm/sec)   p_kst 1.281977e-04   p_cons 4.249407e-01   p_joint 2.453488e-04

Joint ci ratio: 1.346762e-01	ci left: 2.289715e-04	ci right 2.623115e-04	k: 846	n:3450000
Cons ci ratio: 2.455146e-03	ci left: 4.244090e-01	ci right 4.254526e-01	k: 1466011	n:3450000
KS ci ratio: 1.864434e-01	ci left: 1.161734e-04	ci right 1.403309e-04	k: 441	n:3450000
SETD5   3450000 perm   5507 sec   (626 perm/sec)   p_kst 1.278261e-04   p_cons 4.249307e-01   p_joint 2.452174e-04

Joint ci ratio: 1.345175e-01	ci left: 2.288683e-04	ci right 2.621509e-04	k: 848	n:3460000
Cons ci ratio: 2.451438e-03	ci left: 4.244412e-01	ci right 4.254832e-01	k: 1470369	n:3460000
KS ci ratio: 1.864434e-01	ci left: 1.158376e-04	ci right 1.399253e-04	k: 441	n:3460000
SETD5   3460000 perm   5536 sec   (625 perm/sec)   p_kst 1.274566e-04   p_cons 4.249621e-01   p_joint 2.450867e-04

Joint ci ratio: 1.344384e-01	ci left: 2.284872e-04	ci right 2.616933e-04	k: 849	n:3470000
Cons ci ratio: 2.447895e-03	ci left: 4.244435e-01	ci right 4.254840e-01	k: 1474624	n:3470000
KS ci ratio: 1.860230e-01	ci left: 1.160533e-04	ci right 1.401253e-04	k: 443	n:3470000
SETD5   3470000 perm   5565 sec   (624 perm/sec)   p_kst 1.276657e-04   p_cons 4.249637e-01   p_joint 2.446686e-04

Joint ci ratio: 1.343594e-01	ci left: 2.281083e-04	ci right 2.612383e-04	k: 850	n:3480000
Cons ci ratio: 2.444358e-03	ci left: 4.244478e-01	ci right 4.254868e-01	k: 1478886	n:3480000
KS ci ratio: 1.860231e-01	ci left: 1.157198e-04	ci right 1.397227e-04	k: 443	n:3480000
SETD5   3480000 perm   5595 sec   (622 perm/sec)   p_kst 1.272989e-04   p_cons 4.249672e-01   p_joint 2.442529e-04

Joint ci ratio: 1.341232e-01	ci left: 2.282855e-04	ci right 2.613782e-04	k: 853	n:3490000
Cons ci ratio: 2.440913e-03	ci left: 4.244366e-01	ci right 4.254741e-01	k: 1483094	n:3490000
KS ci ratio: 1.858139e-01	ci left: 1.156614e-04	ci right 1.396222e-04	k: 444	n:3490000
SETD5   3490000 perm   5624 sec   (621 perm/sec)   p_kst 1.272206e-04   p_cons 4.249553e-01   p_joint 2.444126e-04

Joint ci ratio: 1.339664e-01	ci left: 2.281855e-04	ci right 2.612220e-04	k: 855	n:3500000
Cons ci ratio: 2.437516e-03	ci left: 4.244189e-01	ci right 4.254549e-01	k: 1487279	n:3500000
KS ci ratio: 1.856055e-01	ci left: 1.156034e-04	ci right 1.395222e-04	k: 445	n:3500000
SETD5   3500000 perm   5654 sec   (619 perm/sec)   p_kst 1.271429e-04   p_cons 4.249369e-01   p_joint 2.442857e-04

Joint ci ratio: 1.348358e-01	ci left: 2.245068e-04	ci right 2.572386e-04	k: 844	n:3510000
Cons ci ratio: 2.434030e-03	ci left: 4.244218e-01	ci right 4.254564e-01	k: 1491536	n:3510000
KS ci ratio: 1.856056e-01	ci left: 1.152741e-04	ci right 1.391247e-04	k: 445	n:3510000
SETD5   3510000 perm   5683 sec   (618 perm/sec)   p_kst 1.267806e-04   p_cons 4.249390e-01   p_joint 2.404558e-04

Joint ci ratio: 1.347562e-01	ci left: 2.241435e-04	ci right 2.568015e-04	k: 845	n:3520000
Cons ci ratio: 2.430458e-03	ci left: 4.244452e-01	ci right 4.254783e-01	k: 1495865	n:3520000
KS ci ratio: 1.856056e-01	ci left: 1.149466e-04	ci right 1.387295e-04	k: 445	n:3520000
SETD5   3520000 perm   5714 sec   (616 perm/sec)   p_kst 1.264205e-04   p_cons 4.249616e-01   p_joint 2.400568e-04

Joint ci ratio: 1.345972e-01	ci left: 2.240560e-04	ci right 2.566597e-04	k: 847	n:3530000
Cons ci ratio: 2.427053e-03	ci left: 4.244378e-01	ci right 4.254694e-01	k: 1500086	n:3530000
KS ci ratio: 1.851908e-01	ci left: 1.151612e-04	ci right 1.389293e-04	k: 447	n:3530000
SETD5   3530000 perm   5744 sec   (615 perm/sec)   p_kst 1.266289e-04   p_cons 4.249535e-01   p_joint 2.399433e-04

Joint ci ratio: 1.475164e-01	ci left: 1.847225e-04	ci right 2.144103e-04	k: 705	n:3540000
Cons ci ratio: 2.423629e-03	ci left: 4.244372e-01	ci right 4.254674e-01	k: 1504331	n:3540000
KS ci ratio: 1.847788e-01	ci left: 1.153747e-04	ci right 1.391280e-04	k: 449	n:3540000
SETD5   3540000 perm   5774 sec   (613 perm/sec)   p_kst 1.268362e-04   p_cons 4.249523e-01   p_joint 1.991525e-04

Joint ci ratio: 1.475165e-01	ci left: 1.842021e-04	ci right 2.138063e-04	k: 705	n:3550000
Cons ci ratio: 2.420130e-03	ci left: 4.244547e-01	ci right 4.254834e-01	k: 1508640	n:3550000
KS ci ratio: 1.841659e-01	ci left: 1.158558e-04	ci right 1.396201e-04	k: 452	n:3550000
SETD5   3550000 perm   5804 sec   (612 perm/sec)   p_kst 1.273239e-04   p_cons 4.249690e-01   p_joint 1.985915e-04

Joint ci ratio: 1.473080e-01	ci left: 1.842258e-04	ci right 2.137882e-04	k: 707	n:3560000
Cons ci ratio: 2.416777e-03	ci left: 4.244457e-01	ci right 4.254730e-01	k: 1512855	n:3560000
KS ci ratio: 1.837607e-01	ci left: 1.160663e-04	ci right 1.398155e-04	k: 454	n:3560000
SETD5   3560000 perm   5834 sec   (610 perm/sec)   p_kst 1.275281e-04   p_cons 4.249593e-01   p_joint 1.985955e-04

Joint ci ratio: 1.473080e-01	ci left: 1.837097e-04	ci right 2.131894e-04	k: 707	n:3570000
Cons ci ratio: 2.413423e-03	ci left: 4.244395e-01	ci right 4.254654e-01	k: 1517080	n:3570000
KS ci ratio: 1.835591e-01	ci left: 1.160084e-04	ci right 1.397169e-04	k: 455	n:3570000
SETD5   3570000 perm   5864 sec   (609 perm/sec)   p_kst 1.274510e-04   p_cons 4.249524e-01   p_joint 1.980392e-04

Joint ci ratio: 1.483597e-01	ci left: 1.805066e-04	ci right 2.096974e-04	k: 697	n:3580000
Cons ci ratio: 2.410081e-03	ci left: 4.244339e-01	ci right 4.254584e-01	k: 1521307	n:3580000
KS ci ratio: 1.835591e-01	ci left: 1.156843e-04	ci right 1.393266e-04	k: 455	n:3580000
SETD5   3580000 perm   5894 sec   (607 perm/sec)   p_kst 1.270950e-04   p_cons 4.249461e-01   p_joint 1.946927e-04

Joint ci ratio: 1.483597e-01	ci left: 1.800038e-04	ci right 2.091133e-04	k: 697	n:3590000
Cons ci ratio: 2.406702e-03	ci left: 4.244387e-01	ci right 4.254617e-01	k: 1525571	n:3590000
KS ci ratio: 1.835591e-01	ci left: 1.153621e-04	ci right 1.389385e-04	k: 455	n:3590000
SETD5   3590000 perm   5925 sec   (606 perm/sec)   p_kst 1.267409e-04   p_cons 4.249501e-01   p_joint 1.941504e-04

Joint ci ratio: 1.478311e-01	ci left: 1.808412e-04	ci right 2.099727e-04	k: 702	n:3600000
Cons ci ratio: 2.403461e-03	ci left: 4.244184e-01	ci right 4.254400e-01	k: 1529745	n:3600000
KS ci ratio: 1.829582e-01	ci left: 1.158367e-04	ci right 1.394241e-04	k: 458	n:3600000
SETD5   3600000 perm   5955 sec   (605 perm/sec)   p_kst 1.272222e-04   p_cons 4.249292e-01   p_joint 1.950000e-04

Joint ci ratio: 1.476213e-01	ci left: 1.808738e-04	ci right 2.099655e-04	k: 704	n:3610000
Cons ci ratio: 2.400060e-03	ci left: 4.244332e-01	ci right 4.254533e-01	k: 1534045	n:3610000
KS ci ratio: 1.829583e-01	ci left: 1.155159e-04	ci right 1.390379e-04	k: 458	n:3610000
SETD5   3610000 perm   5985 sec   (603 perm/sec)   p_kst 1.268698e-04   p_cons 4.249432e-01   p_joint 1.950139e-04

Joint ci ratio: 1.474124e-01	ci left: 1.809062e-04	ci right 2.099584e-04	k: 706	n:3620000
Cons ci ratio: 2.396647e-03	ci left: 4.244534e-01	ci right 4.254721e-01	k: 1538365	n:3620000
KS ci ratio: 1.829583e-01	ci left: 1.151968e-04	ci right 1.386538e-04	k: 458	n:3620000
SETD5   3620000 perm   6015 sec   (602 perm/sec)   p_kst 1.265193e-04   p_cons 4.249627e-01   p_joint 1.950276e-04

Joint ci ratio: 1.473082e-01	ci left: 1.806732e-04	ci right 2.096656e-04	k: 707	n:3630000
Cons ci ratio: 2.393299e-03	ci left: 4.244633e-01	ci right 4.254806e-01	k: 1542648	n:3630000
KS ci ratio: 1.829583e-01	ci left: 1.148794e-04	ci right 1.382718e-04	k: 458	n:3630000
SETD5   3630000 perm   6046 sec   (600 perm/sec)   p_kst 1.261708e-04   p_cons 4.249719e-01   p_joint 1.947658e-04

Joint ci ratio: 1.472043e-01	ci left: 1.804414e-04	ci right 2.093745e-04	k: 708	n:3640000
Cons ci ratio: 2.390034e-03	ci left: 4.244588e-01	ci right 4.254748e-01	k: 1546879	n:3640000
KS ci ratio: 1.827594e-01	ci left: 1.148260e-04	ci right 1.381793e-04	k: 459	n:3640000
SETD5   3640000 perm   6077 sec   (599 perm/sec)   p_kst 1.260989e-04   p_cons 4.249668e-01   p_joint 1.945055e-04

Joint ci ratio: 1.471006e-01	ci left: 1.802110e-04	ci right 2.090849e-04	k: 709	n:3650000
Cons ci ratio: 2.386754e-03	ci left: 4.244605e-01	ci right 4.254750e-01	k: 1551132	n:3650000
KS ci ratio: 1.821663e-01	ci left: 1.152958e-04	ci right 1.386601e-04	k: 462	n:3650000
SETD5   3650000 perm   6108 sec   (598 perm/sec)   p_kst 1.265753e-04   p_cons 4.249677e-01   p_joint 1.942466e-04

Joint ci ratio: 1.467908e-01	ci left: 1.805081e-04	ci right 2.093634e-04	k: 712	n:3660000
Cons ci ratio: 2.383457e-03	ci left: 4.244681e-01	ci right 4.254812e-01	k: 1555407	n:3660000
KS ci ratio: 1.817741e-01	ci left: 1.155023e-04	ci right 1.388526e-04	k: 464	n:3660000
SETD5   3660000 perm   6139 sec   (596 perm/sec)   p_kst 1.267760e-04   p_cons 4.249746e-01   p_joint 1.945355e-04

Joint ci ratio: 1.464830e-01	ci left: 1.808037e-04	ci right 2.096403e-04	k: 715	n:3670000
Cons ci ratio: 2.380231e-03	ci left: 4.244639e-01	ci right 4.254757e-01	k: 1559639	n:3670000
KS ci ratio: 1.813844e-01	ci left: 1.157078e-04	ci right 1.390439e-04	k: 466	n:3670000
SETD5   3670000 perm   6170 sec   (595 perm/sec)   p_kst 1.269755e-04   p_cons 4.249698e-01   p_joint 1.948229e-04

Joint ci ratio: 1.460755e-01	ci left: 1.813596e-04	ci right 2.101974e-04	k: 719	n:3680000
Cons ci ratio: 2.376933e-03	ci left: 4.244775e-01	ci right 4.254879e-01	k: 1563936	n:3680000
KS ci ratio: 1.811905e-01	ci left: 1.156527e-04	ci right 1.389501e-04	k: 467	n:3680000
SETD5   3680000 perm   6201 sec   (593 perm/sec)   p_kst 1.269022e-04   p_cons 4.249826e-01   p_joint 1.953804e-04

Joint ci ratio: 1.455708e-01	ci left: 1.821737e-04	ci right 2.110321e-04	k: 724	n:3690000
Cons ci ratio: 2.373736e-03	ci left: 4.244728e-01	ci right 4.254818e-01	k: 1568166	n:3690000
KS ci ratio: 1.806125e-01	ci left: 1.161155e-04	ci right 1.394234e-04	k: 470	n:3690000
SETD5   3690000 perm   6232 sec   (592 perm/sec)   p_kst 1.273713e-04   p_cons 4.249772e-01   p_joint 1.962060e-04

Joint ci ratio: 1.454706e-01	ci left: 1.819417e-04	ci right 2.107419e-04	k: 725	n:3700000
Cons ci ratio: 2.370571e-03	ci left: 4.244641e-01	ci right 4.254717e-01	k: 1572381	n:3700000
KS ci ratio: 1.806125e-01	ci left: 1.158017e-04	ci right 1.390465e-04	k: 470	n:3700000
SETD5   3700000 perm   6264 sec   (591 perm/sec)   p_kst 1.270270e-04   p_cons 4.249678e-01   p_joint 1.959459e-04

Joint ci ratio: 1.449721e-01	ci left: 1.827501e-04	ci right 2.115705e-04	k: 730	n:3710000
Cons ci ratio: 2.367301e-03	ci left: 4.244799e-01	ci right 4.254862e-01	k: 1576687	n:3710000
KS ci ratio: 1.802303e-01	ci left: 1.160043e-04	ci right 1.392351e-04	k: 472	n:3710000
SETD5   3710000 perm   6295 sec   (589 perm/sec)   p_kst 1.272237e-04   p_cons 4.249830e-01   p_joint 1.967655e-04

Joint ci ratio: 1.449722e-01	ci left: 1.822588e-04	ci right 2.110017e-04	k: 730	n:3720000
Cons ci ratio: 2.363964e-03	ci left: 4.245121e-01	ci right 4.255171e-01	k: 1581054	n:3720000
KS ci ratio: 1.802303e-01	ci left: 1.156925e-04	ci right 1.388609e-04	k: 472	n:3720000
SETD5   3720000 perm   6327 sec   (588 perm/sec)   p_kst 1.268817e-04   p_cons 4.250145e-01   p_joint 1.962366e-04

Joint ci ratio: 1.447743e-01	ci left: 1.822869e-04	ci right 2.109917e-04	k: 732	n:3730000
Cons ci ratio: 2.360833e-03	ci left: 4.245047e-01	ci right 4.255083e-01	k: 1585274	n:3730000
KS ci ratio: 1.802303e-01	ci left: 1.153823e-04	ci right 1.384886e-04	k: 472	n:3730000
SETD5   3730000 perm   6358 sec   (587 perm/sec)   p_kst 1.265416e-04   p_cons 4.250064e-01   p_joint 1.962466e-04

Joint ci ratio: 1.457723e-01	ci left: 1.792229e-04	ci right 2.076566e-04	k: 722	n:3740000
Cons ci ratio: 2.357633e-03	ci left: 4.245139e-01	ci right 4.255162e-01	k: 1589556	n:3740000
KS ci ratio: 1.796614e-01	ci left: 1.158398e-04	ci right 1.389565e-04	k: 475	n:3740000
SETD5   3740000 perm   6390 sec   (585 perm/sec)   p_kst 1.270053e-04   p_cons 4.250150e-01   p_joint 1.930481e-04

Joint ci ratio: 1.455711e-01	ci left: 1.792589e-04	ci right 2.076556e-04	k: 724	n:3750000
Cons ci ratio: 2.354493e-03	ci left: 4.245135e-01	ci right 4.255144e-01	k: 1593802	n:3750000
KS ci ratio: 1.792852e-01	ci left: 1.160403e-04	ci right 1.391432e-04	k: 477	n:3750000
SETD5   3750000 perm   6421 sec   (584 perm/sec)   p_kst 1.272000e-04   p_cons 4.250139e-01   p_joint 1.930667e-04

Joint ci ratio: 1.454708e-01	ci left: 1.790384e-04	ci right 2.073790e-04	k: 725	n:3760000
Cons ci ratio: 2.351419e-03	ci left: 4.245019e-01	ci right 4.255015e-01	k: 1598006	n:3760000
KS ci ratio: 1.790979e-01	ci left: 1.159857e-04	ci right 1.390510e-04	k: 478	n:3760000
SETD5   3760000 perm   6452 sec   (583 perm/sec)   p_kst 1.271277e-04   p_cons 4.250016e-01   p_joint 1.928191e-04

Joint ci ratio: 1.452708e-01	ci left: 1.790747e-04	ci right 2.073787e-04	k: 727	n:3770000
Cons ci ratio: 2.348232e-03	ci left: 4.245163e-01	ci right 4.255146e-01	k: 1602308	n:3770000
KS ci ratio: 1.787252e-01	ci left: 1.161848e-04	ci right 1.392364e-04	k: 480	n:3770000
SETD5   3770000 perm   6483 sec   (581 perm/sec)   p_kst 1.273210e-04   p_cons 4.250154e-01   p_joint 1.928382e-04

Joint ci ratio: 1.447744e-01	ci left: 1.798757e-04	ci right 2.082008e-04	k: 732	n:3780000
Cons ci ratio: 2.345095e-03	ci left: 4.245230e-01	ci right 4.255200e-01	k: 1606581	n:3780000
KS ci ratio: 1.787252e-01	ci left: 1.158774e-04	ci right 1.388681e-04	k: 480	n:3780000
SETD5   3780000 perm   6514 sec   (580 perm/sec)   p_kst 1.269841e-04   p_cons 4.250214e-01   p_joint 1.936508e-04

Joint ci ratio: 1.445773e-01	ci left: 1.799097e-04	ci right 2.081982e-04	k: 734	n:3790000
Cons ci ratio: 2.341943e-03	ci left: 4.245352e-01	ci right 4.255309e-01	k: 1610875	n:3790000
KS ci ratio: 1.787252e-01	ci left: 1.155717e-04	ci right 1.385017e-04	k: 480	n:3790000
SETD5   3790000 perm   6546 sec   (579 perm/sec)   p_kst 1.266491e-04   p_cons 4.250330e-01   p_joint 1.936675e-04

Joint ci ratio: 1.442832e-01	ci left: 1.801972e-04	ci right 2.084683e-04	k: 737	n:3800000
Cons ci ratio: 2.338875e-03	ci left: 4.245326e-01	ci right 4.255270e-01	k: 1615113	n:3800000
KS ci ratio: 1.785398e-01	ci left: 1.155189e-04	ci right 1.384121e-04	k: 481	n:3800000
SETD5   3800000 perm   6579 sec   (578 perm/sec)   p_kst 1.265789e-04   p_cons 4.250297e-01   p_joint 1.939474e-04

Joint ci ratio: 1.440881e-01	ci left: 1.802303e-04	ci right 2.084650e-04	k: 739	n:3810000
Cons ci ratio: 2.335722e-03	ci left: 4.245505e-01	ci right 4.255436e-01	k: 1619429	n:3810000
KS ci ratio: 1.785398e-01	ci left: 1.152157e-04	ci right 1.380488e-04	k: 481	n:3810000
SETD5   3810000 perm   6610 sec   (576 perm/sec)   p_kst 1.262467e-04   p_cons 4.250470e-01   p_joint 1.939633e-04

Joint ci ratio: 1.440881e-01	ci left: 1.797584e-04	ci right 2.079193e-04	k: 739	n:3820000
Cons ci ratio: 2.332692e-03	ci left: 4.245450e-01	ci right 4.255368e-01	k: 1623656	n:3820000
KS ci ratio: 1.783549e-01	ci left: 1.151642e-04	ci right 1.379609e-04	k: 482	n:3820000
SETD5   3820000 perm   6641 sec   (575 perm/sec)   p_kst 1.261780e-04   p_cons 4.250408e-01   p_joint 1.934555e-04

Joint ci ratio: 1.438938e-01	ci left: 1.797925e-04	ci right 2.079174e-04	k: 741	n:3830000
Cons ci ratio: 2.329604e-03	ci left: 4.245542e-01	ci right 4.255446e-01	k: 1627939	n:3830000
KS ci ratio: 1.781705e-01	ci left: 1.151129e-04	ci right 1.378734e-04	k: 483	n:3830000
SETD5   3830000 perm   6672 sec   (574 perm/sec)   p_kst 1.261097e-04   p_cons 4.250493e-01   p_joint 1.934726e-04

Joint ci ratio: 1.437002e-01	ci left: 1.798264e-04	ci right 2.079155e-04	k: 743	n:3840000
Cons ci ratio: 2.326579e-03	ci left: 4.245526e-01	ci right 4.255418e-01	k: 1632181	n:3840000
KS ci ratio: 1.779868e-01	ci left: 1.150620e-04	ci right 1.377864e-04	k: 484	n:3840000
SETD5   3840000 perm   6704 sec   (573 perm/sec)   p_kst 1.260417e-04   p_cons 4.250471e-01   p_joint 1.934896e-04

Joint ci ratio: 1.437003e-01	ci left: 1.793593e-04	ci right 2.073755e-04	k: 743	n:3850000
Cons ci ratio: 2.323532e-03	ci left: 4.245583e-01	ci right 4.255462e-01	k: 1636451	n:3850000
KS ci ratio: 1.779868e-01	ci left: 1.147631e-04	ci right 1.374285e-04	k: 484	n:3850000
SETD5   3850000 perm   6735 sec   (572 perm/sec)   p_kst 1.257143e-04   p_cons 4.250522e-01   p_joint 1.929870e-04

Joint ci ratio: 1.434114e-01	ci left: 1.796439e-04	ci right 2.076434e-04	k: 746	n:3860000
Cons ci ratio: 2.320407e-03	ci left: 4.245827e-01	ci right 4.255693e-01	k: 1640793	n:3860000
KS ci ratio: 1.778036e-01	ci left: 1.147133e-04	ci right 1.373431e-04	k: 485	n:3860000
SETD5   3860000 perm   6767 sec   (570 perm/sec)   p_kst 1.256477e-04   p_cons 4.250759e-01   p_joint 1.932642e-04

Joint ci ratio: 1.432198e-01	ci left: 1.796780e-04	ci right 2.076421e-04	k: 748	n:3870000
Cons ci ratio: 2.317388e-03	ci left: 4.245875e-01	ci right 4.255728e-01	k: 1645060	n:3870000
KS ci ratio: 1.778036e-01	ci left: 1.144169e-04	ci right 1.369882e-04	k: 485	n:3870000
SETD5   3870000 perm   6798 sec   (569 perm/sec)   p_kst 1.253230e-04   p_cons 4.250801e-01   p_joint 1.932817e-04

Joint ci ratio: 1.148800e-01	ci left: 2.827632e-04	ci right 3.174743e-04	k: 1163	n:3880000
Cons ci ratio: 2.314458e-03	ci left: 4.245758e-01	ci right 4.255599e-01	k: 1649263	n:3880000
KS ci ratio: 1.776210e-01	ci left: 1.143683e-04	ci right 1.369043e-04	k: 486	n:3880000
SETD5   3880000 perm   6830 sec   (568 perm/sec)   p_kst 1.252577e-04   p_cons 4.250678e-01   p_joint 2.997423e-04

Joint ci ratio: 1.148307e-01	ci left: 2.822859e-04	ci right 3.169226e-04	k: 1164	n:3890000
Cons ci ratio: 2.311456e-03	ci left: 4.245817e-01	ci right 4.255645e-01	k: 1653534	n:3890000
KS ci ratio: 1.776210e-01	ci left: 1.140743e-04	ci right 1.365524e-04	k: 486	n:3890000
SETD5   3890000 perm   6861 sec   (567 perm/sec)   p_kst 1.249357e-04   p_cons 4.250730e-01   p_joint 2.992288e-04

Joint ci ratio: 1.145850e-01	ci left: 2.828074e-04	ci right 3.174288e-04	k: 1169	n:3900000
Cons ci ratio: 2.308541e-03	ci left: 4.245716e-01	ci right 4.255531e-01	k: 1657743	n:3900000
KS ci ratio: 1.770764e-01	ci left: 1.145169e-04	ci right 1.370056e-04	k: 489	n:3900000
SETD5   3900000 perm   6894 sec   (566 perm/sec)   p_kst 1.253846e-04   p_cons 4.250623e-01   p_joint 2.997436e-04

Joint ci ratio: 1.143410e-01	ci left: 2.833263e-04	ci right 3.179323e-04	k: 1174	n:3910000
Cons ci ratio: 2.305518e-03	ci left: 4.245869e-01	ci right 4.255672e-01	k: 1662051	n:3910000
KS ci ratio: 1.767161e-01	ci left: 1.147129e-04	ci right 1.371893e-04	k: 491	n:3910000
SETD5   3910000 perm   6926 sec   (565 perm/sec)   p_kst 1.255754e-04   p_cons 4.250770e-01   p_joint 3.002558e-04

Joint ci ratio: 1.142924e-01	ci left: 2.828513e-04	ci right 3.173836e-04	k: 1175	n:3920000
Cons ci ratio: 2.302586e-03	ci left: 4.245853e-01	ci right 4.255643e-01	k: 1666293	n:3920000
KS ci ratio: 1.765368e-01	ci left: 1.146640e-04	ci right 1.371057e-04	k: 492	n:3920000
SETD5   3920000 perm   6958 sec   (563 perm/sec)   p_kst 1.255102e-04   p_cons 4.250747e-01   p_joint 2.997449e-04

Joint ci ratio: 1.141953e-01	ci left: 2.826260e-04	ci right 3.170995e-04	k: 1177	n:3930000
Cons ci ratio: 2.299584e-03	ci left: 4.246010e-01	ci right 4.255788e-01	k: 1670603	n:3930000
KS ci ratio: 1.763580e-01	ci left: 1.146155e-04	ci right 1.370225e-04	k: 493	n:3930000
SETD5   3930000 perm   6990 sec   (562 perm/sec)   p_kst 1.254453e-04   p_cons 4.250898e-01   p_joint 2.994911e-04

Joint ci ratio: 1.150782e-01	ci left: 2.774711e-04	ci right 3.115953e-04	k: 1159	n:3940000
Cons ci ratio: 2.296683e-03	ci left: 4.245976e-01	ci right 4.255741e-01	k: 1674838	n:3940000
KS ci ratio: 1.761798e-01	ci left: 1.145672e-04	ci right 1.369398e-04	k: 494	n:3940000
SETD5   3940000 perm   7023 sec   (561 perm/sec)   p_kst 1.253807e-04   p_cons 4.250858e-01   p_joint 2.941624e-04

Joint ci ratio: 1.148803e-01	ci left: 2.777521e-04	ci right 3.118482e-04	k: 1163	n:3950000
Cons ci ratio: 2.293788e-03	ci left: 4.245952e-01	ci right 4.255705e-01	k: 1679077	n:3950000
KS ci ratio: 1.761798e-01	ci left: 1.142772e-04	ci right 1.365931e-04	k: 494	n:3950000
SETD5   3950000 perm   7055 sec   (560 perm/sec)   p_kst 1.250633e-04   p_cons 4.250828e-01   p_joint 2.944304e-04

Joint ci ratio: 1.147817e-01	ci left: 2.775413e-04	ci right 3.115802e-04	k: 1165	n:3960000
Cons ci ratio: 2.290740e-03	ci left: 4.246277e-01	ci right 4.256017e-01	k: 1683454	n:3960000
KS ci ratio: 1.760022e-01	ci left: 1.142300e-04	ci right 1.365118e-04	k: 495	n:3960000
SETD5   3960000 perm   7087 sec   (559 perm/sec)   p_kst 1.250000e-04   p_cons 4.251146e-01   p_joint 2.941919e-04

Joint ci ratio: 1.145853e-01	ci left: 2.778208e-04	ci right 3.118318e-04	k: 1169	n:3970000
Cons ci ratio: 2.287894e-03	ci left: 4.246197e-01	ci right 4.255925e-01	k: 1687671	n:3970000
KS ci ratio: 1.758250e-01	ci left: 1.141830e-04	ci right 1.364309e-04	k: 496	n:3970000
SETD5   3970000 perm   7120 sec   (558 perm/sec)   p_kst 1.249370e-04   p_cons 4.251060e-01   p_joint 2.944584e-04

Joint ci ratio: 1.144875e-01	ci left: 2.776109e-04	ci right 3.115652e-04	k: 1171	n:3980000
Cons ci ratio: 2.284987e-03	ci left: 4.246268e-01	ci right 4.255984e-01	k: 1691948	n:3980000
KS ci ratio: 1.756484e-01	ci left: 1.141363e-04	ci right 1.363504e-04	k: 497	n:3980000
SETD5   3980000 perm   7153 sec   (556 perm/sec)   p_kst 1.248744e-04   p_cons 4.251126e-01   p_joint 2.942211e-04

Joint ci ratio: 1.144388e-01	ci left: 2.771586e-04	ci right 3.110422e-04	k: 1172	n:3990000
Cons ci ratio: 2.282087e-03	ci left: 4.246349e-01	ci right 4.256053e-01	k: 1696229	n:3990000
KS ci ratio: 1.756484e-01	ci left: 1.138503e-04	ci right 1.360087e-04	k: 497	n:3990000
SETD5   3990000 perm   7187 sec   (555 perm/sec)   p_kst 1.245614e-04   p_cons 4.251201e-01   p_joint 2.937343e-04

Joint ci ratio: 1.143413e-01	ci left: 2.769514e-04	ci right 3.107789e-04	k: 1174	n:4000000
Cons ci ratio: 2.279317e-03	ci left: 4.246175e-01	ci right 4.255866e-01	k: 1700408	n:4000000
KS ci ratio: 1.756484e-01	ci left: 1.135657e-04	ci right 1.356687e-04	k: 497	n:4000000
SETD5   4000000 perm   7220 sec   (554 perm/sec)   p_kst 1.242500e-04   p_cons 4.251020e-01   p_joint 2.935000e-04

Joint ci ratio: 1.142442e-01	ci left: 2.767452e-04	ci right 3.105169e-04	k: 1176	n:4010000
Cons ci ratio: 2.276565e-03	ci left: 4.245984e-01	ci right 4.255663e-01	k: 1704580	n:4010000
KS ci ratio: 1.754724e-01	ci left: 1.135209e-04	ci right 1.355906e-04	k: 498	n:4010000
SETD5   4010000 perm   7253 sec   (553 perm/sec)   p_kst 1.241895e-04   p_cons 4.250823e-01   p_joint 2.932668e-04

Joint ci ratio: 1.140988e-01	ci left: 2.767818e-04	ci right 3.105120e-04	k: 1179	n:4020000
Cons ci ratio: 2.273688e-03	ci left: 4.246082e-01	ci right 4.255750e-01	k: 1708868	n:4020000
KS ci ratio: 1.752968e-01	ci left: 1.134763e-04	ci right 1.355130e-04	k: 499	n:4020000
SETD5   4020000 perm   7285 sec   (552 perm/sec)   p_kst 1.241294e-04   p_cons 4.250915e-01   p_joint 2.932836e-04

Joint ci ratio: 1.140506e-01	ci left: 2.763360e-04	ci right 3.099967e-04	k: 1180	n:4030000
Cons ci ratio: 2.270837e-03	ci left: 4.246150e-01	ci right 4.255806e-01	k: 1713144	n:4030000
KS ci ratio: 1.752968e-01	ci left: 1.131947e-04	ci right 1.351768e-04	k: 499	n:4030000
SETD5   4030000 perm   7318 sec   (551 perm/sec)   p_kst 1.238213e-04   p_cons 4.250978e-01   p_joint 2.928040e-04

Joint ci ratio: 1.140506e-01	ci left: 2.756520e-04	ci right 3.092294e-04	k: 1180	n:4040000
Cons ci ratio: 2.267964e-03	ci left: 4.246288e-01	ci right 4.255931e-01	k: 1717448	n:4040000
KS ci ratio: 1.752969e-01	ci left: 1.129146e-04	ci right 1.348422e-04	k: 499	n:4040000
SETD5   4040000 perm   7352 sec   (550 perm/sec)   p_kst 1.235149e-04   p_cons 4.251109e-01   p_joint 2.920792e-04

Joint ci ratio: 1.139542e-01	ci left: 2.754511e-04	ci right 3.089738e-04	k: 1182	n:4050000
Cons ci ratio: 2.265239e-03	ci left: 4.246128e-01	ci right 4.255760e-01	k: 1721632	n:4050000
KS ci ratio: 1.751218e-01	ci left: 1.128718e-04	ci right 1.347670e-04	k: 500	n:4050000
SETD5   4050000 perm   7386 sec   (548 perm/sec)   p_kst 1.234568e-04   p_cons 4.250943e-01   p_joint 2.918519e-04

Joint ci ratio: 1.146838e-01	ci left: 2.711837e-04	ci right 3.044126e-04	k: 1167	n:4060000
Cons ci ratio: 2.262455e-03	ci left: 4.246117e-01	ci right 4.255737e-01	k: 1725876	n:4060000
KS ci ratio: 1.749473e-01	ci left: 1.128293e-04	ci right 1.346921e-04	k: 501	n:4060000
SETD5   4060000 perm   7419 sec   (547 perm/sec)   p_kst 1.233990e-04   p_cons 4.250926e-01   p_joint 2.874384e-04

Joint ci ratio: 1.145368e-01	ci left: 2.712334e-04	ci right 3.044229e-04	k: 1170	n:4070000
Cons ci ratio: 2.259596e-03	ci left: 4.246292e-01	ci right 4.255900e-01	k: 1730196	n:4070000
KS ci ratio: 1.749474e-01	ci left: 1.125521e-04	ci right 1.343612e-04	k: 501	n:4070000
SETD5   4070000 perm   7453 sec   (546 perm/sec)   p_kst 1.230958e-04   p_cons 4.251096e-01   p_joint 2.874693e-04

Joint ci ratio: 1.143904e-01	ci left: 2.712828e-04	ci right 3.044331e-04	k: 1173	n:4080000
Cons ci ratio: 2.256904e-03	ci left: 4.246126e-01	ci right 4.255723e-01	k: 1734377	n:4080000
KS ci ratio: 1.745999e-01	ci left: 1.127450e-04	ci right 1.345435e-04	k: 503	n:4080000
SETD5   4080000 perm   7488 sec   (545 perm/sec)   p_kst 1.232843e-04   p_cons 4.250924e-01   p_joint 2.875000e-04

Joint ci ratio: 1.142445e-01	ci left: 2.713321e-04	ci right 3.044432e-04	k: 1176	n:4090000
Cons ci ratio: 2.254101e-03	ci left: 4.246225e-01	ci right 4.255810e-01	k: 1738666	n:4090000
KS ci ratio: 1.744269e-01	ci left: 1.127032e-04	ci right 1.344697e-04	k: 504	n:4090000
SETD5   4090000 perm   7522 sec   (544 perm/sec)   p_kst 1.232274e-04   p_cons 4.251017e-01   p_joint 2.875306e-04

Joint ci ratio: 1.141476e-01	ci left: 2.711442e-04	ci right 3.042024e-04	k: 1178	n:4100000
Cons ci ratio: 2.251410e-03	ci left: 4.246102e-01	ci right 4.255675e-01	k: 1742864	n:4100000
KS ci ratio: 1.744269e-01	ci left: 1.124283e-04	ci right 1.341417e-04	k: 504	n:4100000
SETD5   4100000 perm   7556 sec   (543 perm/sec)   p_kst 1.229268e-04   p_cons 4.250888e-01   p_joint 2.873171e-04

Joint ci ratio: 1.140509e-01	ci left: 2.709572e-04	ci right 3.039628e-04	k: 1180	n:4110000
Cons ci ratio: 2.248715e-03	ci left: 4.246008e-01	ci right 4.255569e-01	k: 1747074	n:4110000
KS ci ratio: 1.742545e-01	ci left: 1.123874e-04	ci right 1.340692e-04	k: 505	n:4110000
SETD5   4110000 perm   7591 sec   (541 perm/sec)   p_kst 1.228710e-04   p_cons 4.250788e-01   p_joint 2.871046e-04

Joint ci ratio: 1.138102e-01	ci left: 2.714785e-04	ci right 3.044732e-04	k: 1185	n:4120000
Cons ci ratio: 2.245955e-03	ci left: 4.246078e-01	ci right 4.255627e-01	k: 1751351	n:4120000
KS ci ratio: 1.739111e-01	ci left: 1.125789e-04	ci right 1.342504e-04	k: 507	n:4120000
SETD5   4120000 perm   7626 sec   (540 perm/sec)   p_kst 1.230583e-04   p_cons 4.250852e-01   p_joint 2.876214e-04

Joint ci ratio: 1.116194e-01	ci left: 2.818806e-04	ci right 3.154367e-04	k: 1232	n:4130000
Cons ci ratio: 2.243318e-03	ci left: 4.245900e-01	ci right 4.255438e-01	k: 1755526	n:4130000
KS ci ratio: 1.733998e-01	ci left: 1.130012e-04	ci right 1.346833e-04	k: 510	n:4130000
SETD5   4130000 perm   7660 sec   (539 perm/sec)   p_kst 1.234867e-04   p_cons 4.250668e-01   p_joint 2.983051e-04

Joint ci ratio: 1.114838e-01	ci left: 2.819042e-04	ci right 3.154196e-04	k: 1235	n:4140000
Cons ci ratio: 2.240530e-03	ci left: 4.246076e-01	ci right 4.255602e-01	k: 1759847	n:4140000
KS ci ratio: 1.732304e-01	ci left: 1.129593e-04	ci right 1.346100e-04	k: 511	n:4140000
SETD5   4140000 perm   7695 sec   (538 perm/sec)   p_kst 1.234300e-04   p_cons 4.250838e-01   p_joint 2.983092e-04

Joint ci ratio: 1.113039e-01	ci left: 2.821619e-04	ci right 3.156502e-04	k: 1239	n:4150000
Cons ci ratio: 2.237793e-03	ci left: 4.246159e-01	ci right 4.255674e-01	k: 1764130	n:4150000
KS ci ratio: 1.730615e-01	ci left: 1.129176e-04	ci right 1.345370e-04	k: 512	n:4150000
SETD5   4150000 perm   7729 sec   (537 perm/sec)   p_kst 1.233735e-04   p_cons 4.250916e-01   p_joint 2.985542e-04

Joint ci ratio: 1.111248e-01	ci left: 2.824184e-04	ci right 3.158797e-04	k: 1243	n:4160000
Cons ci ratio: 2.235075e-03	ci left: 4.246222e-01	ci right 4.255726e-01	k: 1768405	n:4160000
KS ci ratio: 1.727251e-01	ci left: 1.131061e-04	ci right 1.347151e-04	k: 514	n:4160000
SETD5   4160000 perm   7764 sec   (536 perm/sec)   p_kst 1.235577e-04   p_cons 4.250974e-01   p_joint 2.987981e-04

Joint ci ratio: 1.108134e-01	ci left: 2.833732e-04	ci right 3.168474e-04	k: 1250	n:4170000
Cons ci ratio: 2.232366e-03	ci left: 4.246288e-01	ci right 4.255780e-01	k: 1772681	n:4170000
KS ci ratio: 1.723907e-01	ci left: 1.132938e-04	ci right 1.348924e-04	k: 516	n:4170000
SETD5   4170000 perm   7799 sec   (535 perm/sec)   p_kst 1.237410e-04   p_cons 4.251034e-01   p_joint 2.997602e-04

Joint ci ratio: 1.106807e-01	ci left: 2.833931e-04	ci right 3.168270e-04	k: 1253	n:4180000
Cons ci ratio: 2.229633e-03	ci left: 4.246428e-01	ci right 4.255908e-01	k: 1776988	n:4180000
KS ci ratio: 1.722242e-01	ci left: 1.132517e-04	ci right 1.348192e-04	k: 517	n:4180000
SETD5   4180000 perm   7834 sec   (534 perm/sec)   p_kst 1.236842e-04   p_cons 4.251167e-01   p_joint 2.997608e-04

Joint ci ratio: 1.105926e-01	ci left: 2.831809e-04	ci right 3.165614e-04	k: 1255	n:4190000
Cons ci ratio: 2.227029e-03	ci left: 4.246306e-01	ci right 4.255776e-01	k: 1781186	n:4190000
KS ci ratio: 1.720582e-01	ci left: 1.132098e-04	ci right 1.347464e-04	k: 518	n:4190000
SETD5   4190000 perm   7870 sec   (532 perm/sec)   p_kst 1.236277e-04   p_cons 4.251041e-01   p_joint 2.995227e-04

Joint ci ratio: 1.104169e-01	ci left: 2.834327e-04	ci right 3.167864e-04	k: 1259	n:4200000
Cons ci ratio: 2.224438e-03	ci left: 4.246176e-01	ci right 4.255634e-01	k: 1785380	n:4200000
KS ci ratio: 1.717276e-01	ci left: 1.133959e-04	ci right 1.349222e-04	k: 520	n:4200000
SETD5   4200000 perm   7906 sec   (531 perm/sec)   p_kst 1.238095e-04   p_cons 4.250905e-01   p_joint 2.997619e-04

Joint ci ratio: 1.103731e-01	ci left: 2.829904e-04	ci right 3.162780e-04	k: 1260	n:4210000
Cons ci ratio: 2.221712e-03	ci left: 4.246363e-01	ci right 4.255809e-01	k: 1789707	n:4210000
KS ci ratio: 1.717277e-01	ci left: 1.131266e-04	ci right 1.346017e-04	k: 520	n:4210000
SETD5   4210000 perm   7940 sec   (530 perm/sec)   p_kst 1.235154e-04   p_cons 4.251086e-01   p_joint 2.992874e-04

Joint ci ratio: 1.102421e-01	ci left: 2.830111e-04	ci right 3.162590e-04	k: 1263	n:4220000
Cons ci ratio: 2.219046e-03	ci left: 4.246439e-01	ci right 4.255875e-01	k: 1793988	n:4220000
KS ci ratio: 1.715631e-01	ci left: 1.130853e-04	ci right 1.345299e-04	k: 521	n:4220000
SETD5   4220000 perm   7976 sec   (529 perm/sec)   p_kst 1.234597e-04   p_cons 4.251156e-01   p_joint 2.992891e-04

Joint ci ratio: 1.111698e-01	ci left: 2.775149e-04	ci right 3.104095e-04	k: 1242	n:4230000
Cons ci ratio: 2.216411e-03	ci left: 4.246468e-01	ci right 4.255892e-01	k: 1798249	n:4230000
KS ci ratio: 1.713990e-01	ci left: 1.130442e-04	ci right 1.344584e-04	k: 522	n:4230000
SETD5   4230000 perm   8011 sec   (528 perm/sec)   p_kst 1.234043e-04   p_cons 4.251180e-01   p_joint 2.936170e-04

Joint ci ratio: 1.110804e-01	ci left: 2.773190e-04	ci right 3.101622e-04	k: 1244	n:4240000
Cons ci ratio: 2.213865e-03	ci left: 4.246322e-01	ci right 4.255736e-01	k: 1802436	n:4240000
KS ci ratio: 1.712354e-01	ci left: 1.130033e-04	ci right 1.343873e-04	k: 523	n:4240000
SETD5   4240000 perm   8047 sec   (527 perm/sec)   p_kst 1.233491e-04   p_cons 4.251028e-01   p_joint 2.933962e-04

Joint ci ratio: 1.109468e-01	ci left: 2.773528e-04	ci right 3.101579e-04	k: 1247	n:4250000
Cons ci ratio: 2.211339e-03	ci left: 4.246149e-01	ci right 4.255551e-01	k: 1806611	n:4250000
KS ci ratio: 1.710722e-01	ci left: 1.129627e-04	ci right 1.343164e-04	k: 524	n:4250000
SETD5   4250000 perm   8082 sec   (526 perm/sec)   p_kst 1.232941e-04   p_cons 4.250849e-01   p_joint 2.934118e-04

Joint ci ratio: 1.107695e-01	ci left: 2.776146e-04	ci right 3.103948e-04	k: 1251	n:4260000
Cons ci ratio: 2.208604e-03	ci left: 4.246460e-01	ci right 4.255851e-01	k: 1810992	n:4260000
KS ci ratio: 1.707473e-01	ci left: 1.131469e-04	ci right 1.344907e-04	k: 526	n:4260000
SETD5   4260000 perm   8118 sec   (525 perm/sec)   p_kst 1.234742e-04   p_cons 4.251155e-01   p_joint 2.936620e-04

Joint ci ratio: 1.084131e-01	ci left: 2.894921e-04	ci right 3.229012e-04	k: 1306	n:4270000
Cons ci ratio: 2.205994e-03	ci left: 4.246516e-01	ci right 4.255897e-01	k: 1815265	n:4270000
KS ci ratio: 1.705855e-01	ci left: 1.131061e-04	ci right 1.344199e-04	k: 527	n:4270000
SETD5   4270000 perm   8153 sec   (524 perm/sec)   p_kst 1.234192e-04   p_cons 4.251206e-01   p_joint 3.058548e-04

Joint ci ratio: 1.081651e-01	ci left: 2.901797e-04	ci right 3.235866e-04	k: 1312	n:4280000
Cons ci ratio: 2.203454e-03	ci left: 4.246435e-01	ci right 4.255804e-01	k: 1819479	n:4280000
KS ci ratio: 1.699430e-01	ci left: 1.137366e-04	ci right 1.350802e-04	k: 531	n:4280000
SETD5   4280000 perm   8189 sec   (523 perm/sec)   p_kst 1.240654e-04   p_cons 4.251119e-01   p_joint 3.065421e-04

Joint ci ratio: 1.079597e-01	ci left: 2.906373e-04	ci right 3.240293e-04	k: 1317	n:4290000
Cons ci ratio: 2.200939e-03	ci left: 4.246319e-01	ci right 4.255677e-01	k: 1823678	n:4290000
KS ci ratio: 1.693076e-01	ci left: 1.143643e-04	ci right 1.357373e-04	k: 535	n:4290000
SETD5   4290000 perm   8225 sec   (522 perm/sec)   p_kst 1.247086e-04   p_cons 4.250998e-01   p_joint 3.069930e-04

Joint ci ratio: 1.078370e-01	ci left: 2.906402e-04	ci right 3.239922e-04	k: 1320	n:4300000
Cons ci ratio: 2.198352e-03	ci left: 4.246383e-01	ci right 4.255730e-01	k: 1827954	n:4300000
KS ci ratio: 1.691499e-01	ci left: 1.143210e-04	ci right 1.356640e-04	k: 536	n:4300000
SETD5   4300000 perm   8261 sec   (521 perm/sec)   p_kst 1.246512e-04   p_cons 4.251056e-01   p_joint 3.069767e-04

Joint ci ratio: 1.076741e-01	ci left: 2.908689e-04	ci right 3.241936e-04	k: 1324	n:4310000
Cons ci ratio: 2.195671e-03	ci left: 4.246676e-01	ci right 4.256012e-01	k: 1832329	n:4310000
KS ci ratio: 1.686794e-01	ci left: 1.147224e-04	ci right 1.360747e-04	k: 539	n:4310000
SETD5   4310000 perm   8297 sec   (519 perm/sec)   p_kst 1.250580e-04   p_cons 4.251343e-01   p_joint 3.071926e-04

Joint ci ratio: 1.076335e-01	ci left: 2.904209e-04	ci right 3.236808e-04	k: 1325	n:4320000
Cons ci ratio: 2.193177e-03	ci left: 4.246574e-01	ci right 4.255900e-01	k: 1836534	n:4320000
KS ci ratio: 1.686794e-01	ci left: 1.144569e-04	ci right 1.357597e-04	k: 539	n:4320000
SETD5   4320000 perm   8333 sec   (518 perm/sec)   p_kst 1.247685e-04   p_cons 4.251236e-01   p_joint 3.067130e-04

Joint ci ratio: 1.074312e-01	ci left: 2.908738e-04	ci right 3.241191e-04	k: 1330	n:4330000
Cons ci ratio: 2.190696e-03	ci left: 4.246461e-01	ci right 4.255776e-01	k: 1840734	n:4330000
KS ci ratio: 1.682127e-01	ci left: 1.148562e-04	ci right 1.361682e-04	k: 542	n:4330000
SETD5   4330000 perm   8369 sec   (517 perm/sec)   p_kst 1.251732e-04   p_cons 4.251118e-01   p_joint 3.071594e-04

Joint ci ratio: 1.073103e-01	ci left: 2.908763e-04	ci right 3.240821e-04	k: 1333	n:4340000
Cons ci ratio: 2.188170e-03	ci left: 4.246468e-01	ci right 4.255772e-01	k: 1844986	n:4340000
KS ci ratio: 1.682128e-01	ci left: 1.145915e-04	ci right 1.358544e-04	k: 542	n:4340000
SETD5   4340000 perm   8406 sec   (516 perm/sec)   p_kst 1.248848e-04   p_cons 4.251120e-01   p_joint 3.071429e-04

Joint ci ratio: 1.072299e-01	ci left: 2.906550e-04	ci right 3.238091e-04	k: 1335	n:4350000
Cons ci ratio: 2.185727e-03	ci left: 4.246308e-01	ci right 4.255601e-01	k: 1849165	n:4350000
KS ci ratio: 1.680581e-01	ci left: 1.145483e-04	ci right 1.357817e-04	k: 543	n:4350000
SETD5   4350000 perm   8442 sec   (515 perm/sec)   p_kst 1.248276e-04   p_cons 4.250954e-01   p_joint 3.068966e-04

Joint ci ratio: 1.072300e-01	ci left: 2.899884e-04	ci right 3.230665e-04	k: 1335	n:4360000
Cons ci ratio: 2.183267e-03	ci left: 4.246205e-01	ci right 4.255488e-01	k: 1853369	n:4360000
KS ci ratio: 1.680581e-01	ci left: 1.142856e-04	ci right 1.354702e-04	k: 543	n:4360000
SETD5   4360000 perm   8478 sec   (514 perm/sec)   p_kst 1.245413e-04   p_cons 4.250846e-01   p_joint 3.061927e-04

Joint ci ratio: 1.071098e-01	ci left: 2.899929e-04	ci right 3.230321e-04	k: 1338	n:4370000
Cons ci ratio: 2.180721e-03	ci left: 4.246316e-01	ci right 4.255589e-01	k: 1857666	n:4370000
KS ci ratio: 1.675966e-01	ci left: 1.146817e-04	ci right 1.358755e-04	k: 546	n:4370000
SETD5   4370000 perm   8515 sec   (513 perm/sec)   p_kst 1.249428e-04   p_cons 4.250952e-01   p_joint 3.061785e-04

Joint ci ratio: 1.070698e-01	ci left: 2.895530e-04	ci right 3.225290e-04	k: 1339	n:4380000
Cons ci ratio: 2.178164e-03	ci left: 4.246470e-01	ci right 4.255732e-01	k: 1861982	n:4380000
KS ci ratio: 1.675966e-01	ci left: 1.144199e-04	ci right 1.355653e-04	k: 546	n:4380000
SETD5   4380000 perm   8552 sec   (512 perm/sec)   p_kst 1.246575e-04   p_cons 4.251100e-01   p_joint 3.057078e-04

Joint ci ratio: 1.068706e-01	ci left: 2.900019e-04	ci right 3.229637e-04	k: 1344	n:4390000
Cons ci ratio: 2.175643e-03	ci left: 4.246562e-01	ci right 4.255813e-01	k: 1866271	n:4390000
KS ci ratio: 1.672910e-01	ci left: 1.145957e-04	ci right 1.357312e-04	k: 548	n:4390000
SETD5   4390000 perm   8588 sec   (511 perm/sec)   p_kst 1.248292e-04   p_cons 4.251187e-01   p_joint 3.061503e-04

Joint ci ratio: 1.066330e-01	ci left: 2.906701e-04	ci right 3.236297e-04	k: 1350	n:4400000
Cons ci ratio: 2.173145e-03	ci left: 4.246621e-01	ci right 4.255862e-01	k: 1870546	n:4400000
KS ci ratio: 1.669871e-01	ci left: 1.147708e-04	ci right 1.358962e-04	k: 550	n:4400000
SETD5   4400000 perm   8625 sec   (510 perm/sec)   p_kst 1.250000e-04   p_cons 4.251241e-01   p_joint 3.068182e-04

Joint ci ratio: 1.065542e-01	ci left: 2.904524e-04	ci right 3.233615e-04	k: 1352	n:4410000
Cons ci ratio: 2.170718e-03	ci left: 4.246540e-01	ci right 4.255770e-01	k: 1874759	n:4410000
KS ci ratio: 1.666849e-01	ci left: 1.149452e-04	ci right 1.360605e-04	k: 552	n:4410000
SETD5   4410000 perm   8662 sec   (509 perm/sec)   p_kst 1.251701e-04   p_cons 4.251154e-01   p_joint 3.065760e-04

Joint ci ratio: 1.064755e-01	ci left: 2.902357e-04	ci right 3.230944e-04	k: 1354	n:4420000
Cons ci ratio: 2.168260e-03	ci left: 4.246549e-01	ci right 4.255769e-01	k: 1879012	n:4420000
KS ci ratio: 1.666849e-01	ci left: 1.146851e-04	ci right 1.357527e-04	k: 552	n:4420000
SETD5   4420000 perm   8699 sec   (508 perm/sec)   p_kst 1.248869e-04   p_cons 4.251158e-01   p_joint 3.063348e-04

Joint ci ratio: 1.063579e-01	ci left: 2.902397e-04	ci right 3.230603e-04	k: 1357	n:4430000
Cons ci ratio: 2.165901e-03	ci left: 4.246351e-01	ci right 4.255560e-01	k: 1883173	n:4430000
KS ci ratio: 1.665344e-01	ci left: 1.146425e-04	ci right 1.356814e-04	k: 553	n:4430000
SETD5   4430000 perm   8736 sec   (507 perm/sec)   p_kst 1.248307e-04   p_cons 4.250955e-01   p_joint 3.063205e-04

Joint ci ratio: 1.061236e-01	ci left: 2.909014e-04	ci right 3.237199e-04	k: 1363	n:4440000
Cons ci ratio: 2.163430e-03	ci left: 4.246426e-01	ci right 4.255625e-01	k: 1887455	n:4440000
KS ci ratio: 1.665344e-01	ci left: 1.143843e-04	ci right 1.353758e-04	k: 553	n:4440000
SETD5   4440000 perm   8773 sec   (506 perm/sec)   p_kst 1.245495e-04   p_cons 4.251025e-01   p_joint 3.069820e-04

Joint ci ratio: 1.060071e-01	ci left: 2.909040e-04	ci right 3.236845e-04	k: 1366	n:4450000
Cons ci ratio: 2.160997e-03	ci left: 4.246433e-01	ci right 4.255622e-01	k: 1891707	n:4450000
KS ci ratio: 1.663843e-01	ci left: 1.143426e-04	ci right 1.353057e-04	k: 554	n:4450000
SETD5   4450000 perm   8811 sec   (505 perm/sec)   p_kst 1.244944e-04   p_cons 4.251027e-01   p_joint 3.069663e-04

Joint ci ratio: 9.853845e-02	ci left: 3.372270e-04	ci right 3.723956e-04	k: 1581	n:4460000
Cons ci ratio: 2.158431e-03	ci left: 4.246759e-01	ci right 4.255937e-01	k: 1896101	n:4460000
KS ci ratio: 1.659364e-01	ci left: 1.147310e-04	ci right 1.357029e-04	k: 557	n:4460000
SETD5   4460000 perm   8848 sec   (504 perm/sec)   p_kst 1.248879e-04   p_cons 4.251348e-01   p_joint 3.544843e-04

Joint ci ratio: 9.838309e-02	ci left: 3.375636e-04	ci right 3.727086e-04	k: 1586	n:4470000
Cons ci ratio: 2.156119e-03	ci left: 4.246528e-01	ci right 4.255696e-01	k: 1900247	n:4470000
KS ci ratio: 1.657879e-01	ci left: 1.146887e-04	ci right 1.356323e-04	k: 558	n:4470000
SETD5   4470000 perm   8885 sec   (503 perm/sec)   p_kst 1.248322e-04   p_cons 4.251112e-01   p_joint 3.548098e-04

Joint ci ratio: 9.832117e-02	ci left: 3.372456e-04	ci right 3.723340e-04	k: 1588	n:4480000
Cons ci ratio: 2.153683e-03	ci left: 4.246598e-01	ci right 4.255756e-01	k: 1904527	n:4480000
KS ci ratio: 1.657880e-01	ci left: 1.144327e-04	ci right 1.353295e-04	k: 558	n:4480000
SETD5   4480000 perm   8922 sec   (502 perm/sec)   p_kst 1.245536e-04   p_cons 4.251176e-01   p_joint 3.544643e-04

Joint ci ratio: 9.829027e-02	ci left: 3.367117e-04	ci right 3.717330e-04	k: 1589	n:4490000
Cons ci ratio: 2.151366e-03	ci left: 4.246416e-01	ci right 4.255563e-01	k: 1908694	n:4490000
KS ci ratio: 1.657880e-01	ci left: 1.141778e-04	ci right 1.350281e-04	k: 558	n:4490000
SETD5   4490000 perm   8959 sec   (501 perm/sec)   p_kst 1.242762e-04   p_cons 4.250989e-01   p_joint 3.538976e-04

Joint ci ratio: 9.813608e-02	ci left: 3.370473e-04	ci right 3.720453e-04	k: 1594	n:4500000
Cons ci ratio: 2.149050e-03	ci left: 4.246250e-01	ci right 4.255387e-01	k: 1912868	n:4500000
KS ci ratio: 1.653449e-01	ci left: 1.145632e-04	ci right 1.354223e-04	k: 561	n:4500000
SETD5   4500000 perm   8996 sec   (500 perm/sec)   p_kst 1.246667e-04   p_cons 4.250818e-01   p_joint 3.542222e-04

Joint ci ratio: 9.792140e-02	ci left: 3.378140e-04	ci right 3.728105e-04	k: 1601	n:4510000
Cons ci ratio: 2.146679e-03	ci left: 4.246224e-01	ci right 4.255351e-01	k: 1917105	n:4510000
KS ci ratio: 1.653449e-01	ci left: 1.143091e-04	ci right 1.351221e-04	k: 561	n:4510000
SETD5   4510000 perm   9033 sec   (499 perm/sec)   p_kst 1.243902e-04   p_cons 4.250787e-01   p_joint 3.549889e-04

Joint ci ratio: 1.151797e-01	ci left: 2.414364e-04	ci right 2.711569e-04	k: 1157	n:4520000
Cons ci ratio: 2.144256e-03	ci left: 4.246336e-01	ci right 4.255453e-01	k: 1921404	n:4520000
KS ci ratio: 2.029615e-01	ci left: 7.414929e-05	ci right 9.110386e-05	k: 372	n:4520000
SETD5   4520000 perm   9070 sec   (498 perm/sec)   p_kst 8.230088e-05   p_cons 4.250894e-01   p_joint 2.559735e-04

Joint ci ratio: 1.147839e-01	ci left: 2.426186e-04	ci right 2.723751e-04	k: 1165	n:4530000
Cons ci ratio: 2.141825e-03	ci left: 4.246484e-01	ci right 4.255592e-01	k: 1925720	n:4530000
KS ci ratio: 2.021502e-01	ci left: 7.461427e-05	ci right 9.159854e-05	k: 375	n:4530000
SETD5   4530000 perm   9107 sec   (497 perm/sec)   p_kst 8.278146e-05   p_cons 4.251038e-01   p_joint 2.571744e-04

Joint ci ratio: 1.146365e-01	ci left: 2.427260e-04	ci right 2.724549e-04	k: 1168	n:4540000
Cons ci ratio: 2.139416e-03	ci left: 4.246602e-01	ci right 4.255699e-01	k: 1930022	n:4540000
KS ci ratio: 2.018819e-01	ci left: 7.465905e-05	ci right 9.162817e-05	k: 376	n:4540000
SETD5   4540000 perm   9144 sec   (496 perm/sec)   p_kst 8.281938e-05   p_cons 4.251150e-01   p_joint 2.572687e-04

Joint ci ratio: 1.144408e-01	ci left: 2.430465e-04	ci right 2.727604e-04	k: 1172	n:4550000
Cons ci ratio: 2.137074e-03	ci left: 4.246584e-01	ci right 4.255671e-01	k: 1934263	n:4550000
KS ci ratio: 2.018819e-01	ci left: 7.449496e-05	ci right 9.142679e-05	k: 376	n:4550000
SETD5   4550000 perm   9181 sec   (496 perm/sec)   p_kst 8.263736e-05   p_cons 4.251127e-01   p_joint 2.575824e-04

Joint ci ratio: 1.141977e-01	ci left: 2.435787e-04	ci right 2.732900e-04	k: 1177	n:4560000
Cons ci ratio: 2.134770e-03	ci left: 4.246495e-01	ci right 4.255572e-01	k: 1938471	n:4560000
KS ci ratio: 2.013485e-01	ci left: 7.474805e-05	ci right 9.168700e-05	k: 378	n:4560000
SETD5   4560000 perm   9219 sec   (495 perm/sec)   p_kst 8.289474e-05   p_cons 4.251033e-01   p_joint 2.581140e-04

Joint ci ratio: 1.141009e-01	ci left: 2.434708e-04	ci right 2.731421e-04	k: 1179	n:4570000
Cons ci ratio: 2.132399e-03	ci left: 4.246579e-01	ci right 4.255646e-01	k: 1942758	n:4570000
KS ci ratio: 2.013485e-01	ci left: 7.458449e-05	ci right 9.148638e-05	k: 378	n:4570000
SETD5   4570000 perm   9256 sec   (494 perm/sec)   p_kst 8.271335e-05   p_cons 4.251112e-01   p_joint 2.579869e-04

Joint ci ratio: 1.140526e-01	ci left: 2.431513e-04	ci right 2.727703e-04	k: 1180	n:4580000
Cons ci ratio: 2.129998e-03	ci left: 4.246749e-01	ci right 4.255806e-01	k: 1947085	n:4580000
KS ci ratio: 2.013485e-01	ci left: 7.442164e-05	ci right 9.128662e-05	k: 378	n:4580000
SETD5   4580000 perm   9294 sec   (493 perm/sec)   p_kst 8.253275e-05   p_cons 4.251277e-01   p_joint 2.576419e-04

Joint ci ratio: 1.140526e-01	ci left: 2.426216e-04	ci right 2.721761e-04	k: 1180	n:4590000
Cons ci ratio: 2.127691e-03	ci left: 4.246721e-01	ci right 4.255768e-01	k: 1951321	n:4590000
KS ci ratio: 2.013485e-01	ci left: 7.425950e-05	ci right 9.108774e-05	k: 378	n:4590000
SETD5   4590000 perm   9333 sec   (492 perm/sec)   p_kst 8.235294e-05   p_cons 4.251244e-01   p_joint 2.570806e-04

Joint ci ratio: 1.139080e-01	ci left: 2.427277e-04	ci right 2.722551e-04	k: 1183	n:4600000
Cons ci ratio: 2.125388e-03	ci left: 4.246699e-01	ci right 4.255737e-01	k: 1955560	n:4600000
KS ci ratio: 2.010834e-01	ci left: 7.430450e-05	ci right 9.111806e-05	k: 379	n:4600000
SETD5   4600000 perm   9372 sec   (491 perm/sec)   p_kst 8.239130e-05   p_cons 4.251217e-01   p_joint 2.571739e-04

Joint ci ratio: 1.138600e-01	ci left: 2.424119e-04	ci right 2.718877e-04	k: 1184	n:4610000
Cons ci ratio: 2.123180e-03	ci left: 4.246478e-01	ci right 4.255506e-01	k: 1959707	n:4610000
KS ci ratio: 2.010834e-01	ci left: 7.414332e-05	ci right 9.092040e-05	k: 379	n:4610000
SETD5   4610000 perm   9410 sec   (490 perm/sec)   p_kst 8.221258e-05   p_cons 4.250991e-01   p_joint 2.568330e-04

Joint ci ratio: 1.138120e-01	ci left: 2.420975e-04	ci right 2.715218e-04	k: 1185	n:4620000
Cons ci ratio: 2.120831e-03	ci left: 4.246598e-01	ci right 4.255615e-01	k: 1964011	n:4620000
KS ci ratio: 2.010835e-01	ci left: 7.398284e-05	ci right 9.072361e-05	k: 379	n:4620000
SETD5   4620000 perm   9450 sec   (489 perm/sec)   p_kst 8.203463e-05   p_cons 4.251106e-01   p_joint 2.564935e-04

Joint ci ratio: 1.138120e-01	ci left: 2.415746e-04	ci right 2.709353e-04	k: 1185	n:4630000
Cons ci ratio: 2.118510e-03	ci left: 4.246671e-01	ci right 4.255679e-01	k: 1968294	n:4630000
KS ci ratio: 2.010835e-01	ci left: 7.382305e-05	ci right 9.052766e-05	k: 379	n:4630000
SETD5   4630000 perm   9488 sec   (488 perm/sec)   p_kst 8.185745e-05   p_cons 4.251175e-01   p_joint 2.559395e-04

Joint ci ratio: 1.137641e-01	ci left: 2.412634e-04	ci right 2.705731e-04	k: 1186	n:4640000
Cons ci ratio: 2.116228e-03	ci left: 4.246672e-01	ci right 4.255670e-01	k: 1972543	n:4640000
KS ci ratio: 2.010835e-01	ci left: 7.366395e-05	ci right 9.033256e-05	k: 379	n:4640000
SETD5   4640000 perm   9527 sec   (487 perm/sec)   p_kst 8.168103e-05   p_cons 4.251170e-01   p_joint 2.556034e-04

Joint ci ratio: 1.132878e-01	ci left: 2.428340e-04	ci right 2.722028e-04	k: 1196	n:4650000
Cons ci ratio: 2.113938e-03	ci left: 4.246706e-01	ci right 4.255695e-01	k: 1976808	n:4650000
KS ci ratio: 2.005564e-01	ci left: 7.391401e-05	ci right 9.059000e-05	k: 381	n:4650000
SETD5   4650000 perm   9566 sec   (486 perm/sec)   p_kst 8.193548e-05   p_cons 4.251200e-01   p_joint 2.572043e-04

Joint ci ratio: 1.131933e-01	ci left: 2.427299e-04	ci right 2.720600e-04	k: 1198	n:4660000
Cons ci ratio: 2.111631e-03	ci left: 4.246798e-01	ci right 4.255778e-01	k: 1981100	n:4660000
KS ci ratio: 2.002944e-01	ci left: 7.395922e-05	ci right 9.062095e-05	k: 382	n:4660000
SETD5   4660000 perm   9604 sec   (485 perm/sec)   p_kst 8.197425e-05   p_cons 4.251288e-01   p_joint 2.570815e-04

Joint ci ratio: 1.129579e-01	ci left: 2.432506e-04	ci right 2.725783e-04	k: 1203	n:4670000
Cons ci ratio: 2.109362e-03	ci left: 4.246820e-01	ci right 4.255789e-01	k: 1985359	n:4670000
KS ci ratio: 2.000334e-01	ci left: 7.400425e-05	ci right 9.065175e-05	k: 383	n:4670000
SETD5   4670000 perm   9642 sec   (484 perm/sec)   p_kst 8.201285e-05   p_cons 4.251304e-01   p_joint 2.576017e-04

Joint ci ratio: 1.131933e-01	ci left: 2.416926e-04	ci right 2.708973e-04	k: 1198	n:4680000
Cons ci ratio: 2.107005e-03	ci left: 4.247061e-01	ci right 4.256021e-01	k: 1989721	n:4680000
KS ci ratio: 2.000334e-01	ci left: 7.384612e-05	ci right 9.045805e-05	k: 383	n:4680000
SETD5   4680000 perm   9681 sec   (483 perm/sec)   p_kst 8.183761e-05   p_cons 4.251541e-01   p_joint 2.559829e-04

Joint ci ratio: 1.130520e-01	ci left: 2.417988e-04	ci right 2.709775e-04	k: 1201	n:4690000
Cons ci ratio: 2.104766e-03	ci left: 4.247046e-01	ci right 4.255996e-01	k: 1993963	n:4690000
KS ci ratio: 1.997735e-01	ci left: 7.389122e-05	ci right 9.048905e-05	k: 384	n:4690000
SETD5   4690000 perm   9720 sec   (483 perm/sec)   p_kst 8.187633e-05   p_cons 4.251520e-01   p_joint 2.560768e-04

Joint ci ratio: 1.129111e-01	ci left: 2.419046e-04	ci right 2.710573e-04	k: 1204	n:4700000
Cons ci ratio: 2.102461e-03	ci left: 4.247200e-01	ci right 4.256141e-01	k: 1998285	n:4700000
KS ci ratio: 1.997735e-01	ci left: 7.373400e-05	ci right 9.029652e-05	k: 384	n:4700000
SETD5   4700000 perm   9759 sec   (482 perm/sec)   p_kst 8.170213e-05   p_cons 4.251670e-01   p_joint 2.561702e-04

Joint ci ratio: 1.128176e-01	ci left: 2.418037e-04	ci right 2.709184e-04	k: 1206	n:4710000
Cons ci ratio: 2.100252e-03	ci left: 4.247150e-01	ci right 4.256082e-01	k: 2002511	n:4710000
KS ci ratio: 1.997735e-01	ci left: 7.357745e-05	ci right 9.010481e-05	k: 384	n:4710000
SETD5   4710000 perm   9797 sec   (481 perm/sec)   p_kst 8.152866e-05   p_cons 4.251616e-01   p_joint 2.560510e-04

Joint ci ratio: 1.126776e-01	ci left: 2.419091e-04	ci right 2.709979e-04	k: 1209	n:4720000
Cons ci ratio: 2.098069e-03	ci left: 4.247054e-01	ci right 4.255976e-01	k: 2006715	n:4720000
KS ci ratio: 1.995146e-01	ci left: 7.362284e-05	ci right 9.013635e-05	k: 385	n:4720000
SETD5   4720000 perm   9836 sec   (480 perm/sec)   p_kst 8.156780e-05   p_cons 4.251515e-01   p_joint 2.561441e-04

Joint ci ratio: 1.125846e-01	ci left: 2.418085e-04	ci right 2.708597e-04	k: 1211	n:4730000
Cons ci ratio: 2.095879e-03	ci left: 4.246992e-01	ci right 4.255905e-01	k: 2010935	n:4730000
KS ci ratio: 1.995146e-01	ci left: 7.346719e-05	ci right 8.994579e-05	k: 385	n:4730000
SETD5   4730000 perm   9875 sec   (479 perm/sec)   p_kst 8.139535e-05   p_cons 4.251448e-01   p_joint 2.560254e-04

Joint ci ratio: 1.125846e-01	ci left: 2.412984e-04	ci right 2.702883e-04	k: 1211	n:4740000
Cons ci ratio: 2.093675e-03	ci left: 4.246977e-01	ci right 4.255880e-01	k: 2015177	n:4740000
KS ci ratio: 1.995146e-01	ci left: 7.331219e-05	ci right 8.975603e-05	k: 385	n:4740000
SETD5   4740000 perm   9914 sec   (478 perm/sec)   p_kst 8.122363e-05   p_cons 4.251428e-01   p_joint 2.554852e-04

Joint ci ratio: 1.124456e-01	ci left: 2.414042e-04	ci right 2.703686e-04	k: 1214	n:4750000
Cons ci ratio: 2.091527e-03	ci left: 4.246848e-01	ci right 4.255742e-01	k: 2019365	n:4750000
KS ci ratio: 1.992567e-01	ci left: 7.335787e-05	ci right 8.978810e-05	k: 386	n:4750000
SETD5   4750000 perm   9952 sec   (477 perm/sec)   p_kst 8.126316e-05   p_cons 4.251295e-01   p_joint 2.555789e-04

Joint ci ratio: 1.122609e-01	ci left: 2.417138e-04	ci right 2.706645e-04	k: 1218	n:4760000
Cons ci ratio: 2.089305e-03	ci left: 4.246909e-01	ci right 4.255793e-01	k: 2023643	n:4760000
KS ci ratio: 1.987437e-01	ci left: 7.360299e-05	ci right 9.004054e-05	k: 388	n:4760000
SETD5   4760000 perm   9991 sec   (476 perm/sec)   p_kst 8.151261e-05   p_cons 4.251351e-01   p_joint 2.558824e-04

Joint ci ratio: 1.121230e-01	ci left: 2.418183e-04	ci right 2.707437e-04	k: 1221	n:4770000
Cons ci ratio: 2.087188e-03	ci left: 4.246741e-01	ci right 4.255616e-01	k: 2027812	n:4770000
KS ci ratio: 1.987438e-01	ci left: 7.344869e-05	ci right 8.985178e-05	k: 388	n:4770000
SETD5   4770000 perm   10030 sec   (476 perm/sec)   p_kst 8.134172e-05   p_cons 4.251178e-01   p_joint 2.559748e-04

Joint ci ratio: 1.119856e-01	ci left: 2.419225e-04	ci right 2.708225e-04	k: 1224	n:4780000
Cons ci ratio: 2.085068e-03	ci left: 4.246593e-01	ci right 4.255458e-01	k: 2031990	n:4780000
KS ci ratio: 1.984888e-01	ci left: 7.349383e-05	ci right 8.988340e-05	k: 389	n:4780000
SETD5   4780000 perm   10069 sec   (475 perm/sec)   p_kst 8.138075e-05   p_cons 4.251025e-01   p_joint 2.560669e-04

Joint ci ratio: 1.118488e-01	ci left: 2.420262e-04	ci right 2.709009e-04	k: 1227	n:4790000
Cons ci ratio: 2.082849e-03	ci left: 4.246695e-01	ci right 4.255552e-01	k: 2036288	n:4790000
KS ci ratio: 1.982348e-01	ci left: 7.353880e-05	ci right 8.991487e-05	k: 390	n:4790000
SETD5   4790000 perm   10109 sec   (474 perm/sec)   p_kst 8.141962e-05   p_cons 4.251123e-01   p_joint 2.561587e-04

Joint ci ratio: 1.118033e-01	ci left: 2.417245e-04	ci right 2.705507e-04	k: 1228	n:4800000
Cons ci ratio: 2.080744e-03	ci left: 4.246546e-01	ci right 4.255393e-01	k: 2040465	n:4800000
KS ci ratio: 1.979818e-01	ci left: 7.358359e-05	ci right 8.994620e-05	k: 391	n:4800000
SETD5   4800000 perm   10148 sec   (473 perm/sec)   p_kst 8.145833e-05   p_cons 4.250969e-01   p_joint 2.558333e-04

Joint ci ratio: 1.116217e-01	ci left: 2.420303e-04	ci right 2.708430e-04	k: 1232	n:4810000
Cons ci ratio: 2.078564e-03	ci left: 4.246588e-01	ci right 4.255426e-01	k: 2044734	n:4810000
KS ci ratio: 1.977297e-01	ci left: 7.362821e-05	ci right 8.997739e-05	k: 392	n:4810000
SETD5   4810000 perm   10188 sec   (472 perm/sec)   p_kst 8.149688e-05   p_cons 4.251006e-01   p_joint 2.561331e-04

Joint ci ratio: 1.114411e-01	ci left: 2.423349e-04	ci right 2.711341e-04	k: 1236	n:4820000
Cons ci ratio: 2.076413e-03	ci left: 4.246578e-01	ci right 4.255407e-01	k: 2048978	n:4820000
KS ci ratio: 1.974787e-01	ci left: 7.367266e-05	ci right 9.000844e-05	k: 393	n:4820000
SETD5   4820000 perm   10227 sec   (471 perm/sec)   p_kst 8.153527e-05   p_cons 4.250992e-01   p_joint 2.564315e-04

Joint ci ratio: 1.113511e-01	ci left: 2.422357e-04	ci right 2.709984e-04	k: 1238	n:4830000
Cons ci ratio: 2.074314e-03	ci left: 4.246460e-01	ci right 4.255280e-01	k: 2053170	n:4830000
KS ci ratio: 1.972285e-01	ci left: 7.371694e-05	ci right 9.003934e-05	k: 394	n:4830000
SETD5   4830000 perm   10266 sec   (470 perm/sec)   p_kst 8.157350e-05   p_cons 4.250870e-01   p_joint 2.563147e-04

Joint ci ratio: 1.112614e-01	ci left: 2.421369e-04	ci right 2.708632e-04	k: 1240	n:4840000
Cons ci ratio: 2.072181e-03	ci left: 4.246438e-01	ci right 4.255249e-01	k: 2057408	n:4840000
KS ci ratio: 1.972285e-01	ci left: 7.356463e-05	ci right 8.985331e-05	k: 394	n:4840000
SETD5   4840000 perm   10305 sec   (470 perm/sec)   p_kst 8.140496e-05   p_cons 4.250843e-01   p_joint 2.561983e-04

Joint ci ratio: 1.110379e-01	ci left: 2.426399e-04	ci right 2.713643e-04	k: 1245	n:4850000
Cons ci ratio: 2.069999e-03	ci left: 4.246550e-01	ci right 4.255352e-01	k: 2061711	n:4850000
KS ci ratio: 1.969793e-01	ci left: 7.360896e-05	ci right 8.988439e-05	k: 395	n:4850000
SETD5   4850000 perm   10345 sec   (469 perm/sec)   p_kst 8.144330e-05   p_cons 4.250951e-01   p_joint 2.567010e-04

Joint ci ratio: 1.116672e-01	ci left: 2.393402e-04	ci right 2.678451e-04	k: 1231	n:4860000
Cons ci ratio: 2.067802e-03	ci left: 4.246709e-01	ci right 4.255502e-01	k: 2066037	n:4860000
KS ci ratio: 1.967311e-01	ci left: 7.365313e-05	ci right 8.991533e-05	k: 396	n:4860000
SETD5   4860000 perm   10384 sec   (468 perm/sec)   p_kst 8.148148e-05   p_cons 4.251105e-01   p_joint 2.532922e-04

Joint ci ratio: 1.115767e-01	ci left: 2.392480e-04	ci right 2.677172e-04	k: 1233	n:4870000
Cons ci ratio: 2.065705e-03	ci left: 4.246652e-01	ci right 4.255435e-01	k: 2070258	n:4870000
KS ci ratio: 1.967311e-01	ci left: 7.350189e-05	ci right 8.973070e-05	k: 396	n:4870000
SETD5   4870000 perm   10423 sec   (467 perm/sec)   p_kst 8.131417e-05   p_cons 4.251043e-01   p_joint 2.531828e-04

Joint ci ratio: 1.113963e-01	ci left: 2.395545e-04	ci right 2.680112e-04	k: 1237	n:4880000
Cons ci ratio: 2.063622e-03	ci left: 4.246574e-01	ci right 4.255349e-01	k: 2074469	n:4880000
KS ci ratio: 1.967311e-01	ci left: 7.335127e-05	ci right 8.954683e-05	k: 396	n:4880000
SETD5   4880000 perm   10463 sec   (466 perm/sec)   p_kst 8.114754e-05   p_cons 4.250961e-01   p_joint 2.534836e-04

Joint ci ratio: 1.112615e-01	ci left: 2.396611e-04	ci right 2.680937e-04	k: 1240	n:4890000
Cons ci ratio: 2.061569e-03	ci left: 4.246440e-01	ci right 4.255205e-01	k: 2078652	n:4890000
KS ci ratio: 1.964838e-01	ci left: 7.339570e-05	ci right 8.957826e-05	k: 397	n:4890000
SETD5   4890000 perm   10503 sec   (466 perm/sec)   p_kst 8.118609e-05   p_cons 4.250822e-01   p_joint 2.535787e-04

Joint ci ratio: 1.110826e-01	ci left: 2.399656e-04	ci right 2.683855e-04	k: 1244	n:4900000
Cons ci ratio: 2.059442e-03	ci left: 4.246498e-01	ci right 4.255254e-01	k: 2082929	n:4900000
KS ci ratio: 1.962375e-01	ci left: 7.343996e-05	ci right 8.960955e-05	k: 398	n:4900000
SETD5   4900000 perm   10543 sec   (465 perm/sec)   p_kst 8.122449e-05   p_cons 4.250876e-01   p_joint 2.538776e-04

Joint ci ratio: 1.110381e-01	ci left: 2.396749e-04	ci right 2.680483e-04	k: 1245	n:4910000
Cons ci ratio: 2.057369e-03	ci left: 4.246441e-01	ci right 4.255189e-01	k: 2087150	n:4910000
KS ci ratio: 1.962375e-01	ci left: 7.329039e-05	ci right 8.942704e-05	k: 398	n:4910000
SETD5   4910000 perm   10583 sec   (464 perm/sec)   p_kst 8.105906e-05   p_cons 4.250815e-01   p_joint 2.535642e-04

Joint ci ratio: 1.109936e-01	ci left: 2.393853e-04	ci right 2.677123e-04	k: 1246	n:4920000
Cons ci ratio: 2.055257e-03	ci left: 4.246495e-01	ci right 4.255234e-01	k: 2091425	n:4920000
KS ci ratio: 1.959920e-01	ci left: 7.333470e-05	ci right 8.945850e-05	k: 399	n:4920000
SETD5   4920000 perm   10623 sec   (463 perm/sec)   p_kst 8.109756e-05   p_cons 4.250864e-01   p_joint 2.532520e-04

Joint ci ratio: 1.109047e-01	ci left: 2.392942e-04	ci right 2.675862e-04	k: 1248	n:4930000
Cons ci ratio: 2.053108e-03	ci left: 4.246650e-01	ci right 4.255379e-01	k: 2095750	n:4930000
KS ci ratio: 1.959920e-01	ci left: 7.318594e-05	ci right 8.927705e-05	k: 399	n:4930000
SETD5   4930000 perm   10664 sec   (462 perm/sec)   p_kst 8.093306e-05   p_cons 4.251014e-01   p_joint 2.531440e-04

Joint ci ratio: 1.108160e-01	ci left: 2.392034e-04	ci right 2.674606e-04	k: 1250	n:4940000
Cons ci ratio: 2.051065e-03	ci left: 4.246569e-01	ci right 4.255290e-01	k: 2099959	n:4940000
KS ci ratio: 1.957475e-01	ci left: 7.323030e-05	ci right 8.930867e-05	k: 400	n:4940000
SETD5   4940000 perm   10704 sec   (462 perm/sec)   p_kst 8.097166e-05   p_cons 4.250929e-01   p_joint 2.530364e-04

Joint ci ratio: 1.106392e-01	ci left: 2.395059e-04	ci right 2.677508e-04	k: 1254	n:4950000
Cons ci ratio: 2.049010e-03	ci left: 4.246529e-01	ci right 4.255241e-01	k: 2104188	n:4950000
KS ci ratio: 1.955039e-01	ci left: 7.327448e-05	ci right 8.934015e-05	k: 401	n:4950000
SETD5   4950000 perm   10744 sec   (461 perm/sec)   p_kst 8.101010e-05   p_cons 4.250885e-01   p_joint 2.533333e-04

Joint ci ratio: 1.105072e-01	ci left: 2.396111e-04	ci right 2.678325e-04	k: 1257	n:4960000
Cons ci ratio: 2.046949e-03	ci left: 4.246522e-01	ci right 4.255225e-01	k: 2108433	n:4960000
KS ci ratio: 1.952612e-01	ci left: 7.331850e-05	ci right 8.937149e-05	k: 402	n:4960000
SETD5   4960000 perm   10784 sec   (460 perm/sec)   p_kst 8.104839e-05   p_cons 4.250873e-01   p_joint 2.534274e-04

Joint ci ratio: 1.103757e-01	ci left: 2.397159e-04	ci right 2.679139e-04	k: 1260	n:4970000
Cons ci ratio: 2.044891e-03	ci left: 4.246520e-01	ci right 4.255215e-01	k: 2112681	n:4970000
KS ci ratio: 1.950193e-01	ci left: 7.336236e-05	ci right 8.940269e-05	k: 403	n:4970000
SETD5   4970000 perm   10825 sec   (459 perm/sec)   p_kst 8.108652e-05   p_cons 4.250867e-01   p_joint 2.535211e-04

Joint ci ratio: 1.102446e-01	ci left: 2.398204e-04	ci right 2.679949e-04	k: 1263	n:4980000
Cons ci ratio: 2.042918e-03	ci left: 4.246330e-01	ci right 4.255016e-01	k: 2116835	n:4980000
KS ci ratio: 1.945384e-01	ci left: 7.359707e-05	ci right 8.964433e-05	k: 405	n:4980000
SETD5   4980000 perm   10865 sec   (458 perm/sec)   p_kst 8.132530e-05   p_cons 4.250673e-01   p_joint 2.536145e-04

Joint ci ratio: 1.104195e-01	ci left: 2.385603e-04	ci right 2.666342e-04	k: 1259	n:4990000
Cons ci ratio: 2.040829e-03	ci left: 4.246432e-01	ci right 4.255108e-01	k: 2121134	n:4990000
KS ci ratio: 1.938236e-01	ci left: 7.402155e-05	ci right 9.009508e-05	k: 408	n:4990000
SETD5   4990000 perm   10906 sec   (458 perm/sec)   p_kst 8.176353e-05   p_cons 4.250770e-01   p_joint 2.523046e-04

Joint ci ratio: 1.102883e-01	ci left: 2.386666e-04	ci right 2.667175e-04	k: 1262	n:5000000
Cons ci ratio: 2.038779e-03	ci left: 4.246456e-01	ci right 4.255125e-01	k: 2125395	n:5000000
KS ci ratio: 1.938236e-01	ci left: 7.387351e-05	ci right 8.991489e-05	k: 408	n:5000000
SETD5   5000000 perm   10946 sec   (457 perm/sec)   p_kst 8.160000e-05   p_cons 4.250790e-01   p_joint 2.524000e-04

Outputting figure to mutsig2_images.part000000000155/SETD5.4_4413_5000000_8.16e-05_0.42508_0.0002524.png
                gene_name: SETD5
               theta_stop: 0.19 
                    nperm: 5000000 
                     p_ks: 8.16e-05 
        ci_ks_bounds_left: 7.39e-05 
       ci_ks_bounds_right: 8.99e-05 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.00025 
     ci_joint_bounds_left: 0.00024 
    ci_joint_bounds_right: 0.00027 

Current progress: 33 percent done.
SEPT9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.121293e-01	ci left: 1.027615e-01	ci right 1.150674e-01	k: 1088	n:10000
Cons ci ratio: 1.137175e-01	ci left: 1.001293e-01	ci right 1.123011e-01	k: 1061	n:10000
KS ci ratio: 3.186340e-02	ci left: 5.924281e-01	ci right 6.117124e-01	k: 6021	n:10000
SEPT9   10000 perm   2 sec   (5917 perm/sec)   p_kst 6.021000e-01   p_cons 1.061000e-01   p_joint 1.088000e-01

Joint ci ratio: 7.023766e-02	ci left: 1.299968e-01	ci right 1.395096e-01	k: 2694	n:20000
Cons ci ratio: 7.888301e-02	ci left: 1.055482e-01	ci right 1.142656e-01	k: 2197	n:20000
KS ci ratio: 2.225095e-02	ci left: 6.012941e-01	ci right 6.148745e-01	k: 12162	n:20000
SEPT9   20000 perm   4 sec   (5318 perm/sec)   p_kst 6.081000e-01   p_cons 1.098500e-01   p_joint 1.347000e-01

Outputting figure to mutsig2_images.part000000000155/SEPT9.2_2283_20000_0.6081_0.10985_0.1347.png
                gene_name: SEPT9
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 67 percent done.
SFI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.062157e-02	ci left: 1.834349e-01	ci right 1.989455e-01	k: 1911	n:10000
Cons ci ratio: 1.293583e-01	ci left: 7.863503e-02	ci right 8.960867e-02	k: 840	n:10000
KS ci ratio: 2.934637e-02	ci left: 6.313068e-01	ci right 6.502111e-01	k: 6408	n:10000
SFI1   10000 perm   2 sec   (5404 perm/sec)   p_kst 6.408000e-01   p_cons 8.400000e-02   p_joint 1.911000e-01

Joint ci ratio: 7.970010e-02	ci left: 1.035833e-01	ci right 1.122311e-01	k: 2157	n:20000
Cons ci ratio: 9.470588e-02	ci left: 7.515134e-02	ci right 8.267162e-02	k: 1577	n:20000
KS ci ratio: 2.113892e-02	ci left: 6.255234e-01	ci right 6.389381e-01	k: 12645	n:20000
SFI1   20000 perm   4 sec   (4884 perm/sec)   p_kst 6.322500e-01   p_cons 7.885000e-02   p_joint 1.078500e-01

Outputting figure to mutsig2_images.part000000000155/SFI1.2_3857_20000_0.63225_0.07885_0.10785.png
                gene_name: SFI1
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.083 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000155
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 155 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1538>
Subject: Job 9878157: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1538>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000156> was used as the working directory.
Started at Fri Oct  5 22:56:03 2012
Results reported at Fri Oct  5 23:44:01 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000156.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000156.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 156  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000156.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   3129.59 sec.
    Max Memory :      1953 MB
    Max Swap   :      4756 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
156
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 156
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 156: processing genes 14055 - 14145
Calculating significance of each gene.
Using projection method.
14055	SFN	1
14056	SFPQ	1
14057	SFRP1	1
14058	SFRP2	3.185553e-02
14059	SFRP4	1
14060	SFRP5	1
14061	SFRS1	3.169280e-02
14062	SFRS11	1.041599e-02
14063	SFRS12	1
14064	SFRS12IP1	1
14065	SFRS13B	1
14066	SFRS14	1
14067	SFRS15	1
14068	SFRS16	1.067671e-01
14069	SFRS17A	1.226272e-01
14070	SFRS18	2.423187e-01
In gene SFRS2 the following bins exceed PROBCAP:
    PRAD-CH-5792	categ 6	N = 639     n = 1	mu =   2.67e-07
14071	SFRS2	1.432077e-03
14072	SFRS2B	1
14073	SFRS2IP	2.847062e-01
14074	SFRS3	1
14075	SFRS4	9.491116e-02
14076	SFRS5	1
14077	SFRS6	1
14078	SFRS7	9.029092e-02
14079	SFRS8	1
14080	SFRS9	4.015491e-02
14081	SFT2D1	1
14082	SFT2D2	1
14083	SFTA2	1
14084	SFTA3	1
14085	SFTPA1	1
14086	SFTPA2	1
14087	SFTPB	1
14088	SFTPC	1
14089	SFTPD	1
14090	SFXN1	1
14091	SFXN2	1
14092	SFXN3	1
14093	SFXN4	1
14094	SFXN5	1
14095	SGCA	1
14096	SGCB	1
14097	SGCD	1
14098	SGCE	1
14099	SGCG	1
14100	SGCZ	1
14101	SGEF	1
14102	SGIP1	1.332794e-01
14103	SGK1	1
14104	SGK196	1
14105	SGK2	1
14106	SGK223	1
14107	SGK269	3.089353e-01
14108	SGK3	1
14109	SGK494	1
14110	SGMS1	1
14111	SGMS2	1
14112	SGOL1	1
14113	SGOL2	8.289178e-02
14114	SGPL1	1
14115	SGPP1	1
14116	SGPP2	1
14117	SGSH	1.764954e-03
14118	SGSM1	1.599547e-01
14119	SGSM2	1.460866e-01
14120	SGSM3	1
14121	SGTA	1
14122	SGTB	1
14123	SH2B1	1
14124	SH2B2	1
14125	SH2B3	1
14126	SH2D1A	1
14127	SH2D1B	1
14128	SH2D2A	1
14129	SH2D3A	1
14130	SH2D3C	1
14131	SH2D4A	1
14132	SH2D4B	1
14133	SH2D5	1
14134	SH2D6	1
14135	SH2D7	1
14136	SH3BGR	1
14137	SH3BGRL	1
14138	SH3BGRL2	1
14139	SH3BGRL3	1
14140	SH3BP1	1.029805e-01
14141	SH3BP2	1
14142	SH3BP4	1
14143	SH3BP5	1
14144	SH3BP5L	4.433795e-02
14145	SH3D19	1
Done

Running MutSig 2:
Scatter job 156: processing genes 14055 - 14145
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SFRS11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.046878e+00	ci left: 6.923711e-04	ci right 2.222014e-03	k: 13	n:10000
Cons ci ratio: 2.007721e-02	ci left: 7.841132e-01	ci right 8.001162e-01	k: 7922	n:10000
KS ci ratio: 1.385306e+00	ci left: 2.814811e-04	ci right 1.441732e-03	k: 7	n:10000
SFRS11   10000 perm   2 sec   (5713 perm/sec)   p_kst 7.000000e-04   p_cons 7.922000e-01   p_joint 1.300000e-03

Joint ci ratio: 1.306340e+00	ci left: 1.727069e-04	ci right 7.880065e-04	k: 8	n:20000
Cons ci ratio: 1.423102e-02	ci left: 7.857018e-01	ci right 7.970134e-01	k: 15828	n:20000
KS ci ratio: 1.047271e+00	ci left: 3.461416e-04	ci right 1.111263e-03	k: 13	n:20000
SFRS11   20000 perm   7 sec   (2741 perm/sec)   p_kst 6.500000e-04   p_cons 7.914000e-01   p_joint 4.000000e-04

Joint ci ratio: 8.354264e-01	ci left: 4.333616e-04	ci right 1.069826e-03	k: 21	n:30000
Cons ci ratio: 1.165588e-02	ci left: 7.857159e-01	ci right 7.949611e-01	k: 23711	n:30000
KS ci ratio: 8.354264e-01	ci left: 4.333616e-04	ci right 1.069826e-03	k: 21	n:30000
SFRS11   30000 perm   9 sec   (3210 perm/sec)   p_kst 7.000000e-04   p_cons 7.903667e-01   p_joint 7.000000e-04

Joint ci ratio: 7.154134e-01	ci left: 4.855960e-04	ci right 1.041056e-03	k: 29	n:40000
Cons ci ratio: 1.006354e-02	ci left: 7.873595e-01	ci right 7.953482e-01	k: 31655	n:40000
KS ci ratio: 7.154134e-01	ci left: 4.855960e-04	ci right 1.041056e-03	k: 29	n:40000
SFRS11   40000 perm   11 sec   (3489 perm/sec)   p_kst 7.250000e-04   p_cons 7.913750e-01   p_joint 7.250000e-04

Joint ci ratio: 6.821524e-01	ci left: 4.377994e-04	ci right 9.033700e-04	k: 32	n:50000
Cons ci ratio: 9.018946e-03	ci left: 7.871275e-01	ci right 7.942787e-01	k: 39536	n:50000
KS ci ratio: 6.821524e-01	ci left: 4.377994e-04	ci right 9.033700e-04	k: 32	n:50000
SFRS11   50000 perm   14 sec   (3662 perm/sec)   p_kst 6.400000e-04   p_cons 7.907200e-01   p_joint 6.400000e-04

Joint ci ratio: 6.821911e-01	ci left: 3.648273e-04	ci right 7.528249e-04	k: 32	n:60000
Cons ci ratio: 8.248547e-03	ci left: 7.868192e-01	ci right 7.933528e-01	k: 47406	n:60000
KS ci ratio: 6.821911e-01	ci left: 3.648273e-04	ci right 7.528249e-04	k: 32	n:60000
SFRS11   60000 perm   16 sec   (3763 perm/sec)   p_kst 5.333333e-04   p_cons 7.901000e-01   p_joint 5.333333e-04

Joint ci ratio: 6.442691e-01	ci left: 3.602246e-04	ci right 7.119178e-04	k: 36	n:70000
Cons ci ratio: 7.644887e-03	ci left: 7.867051e-01	ci right 7.927566e-01	k: 55282	n:70000
KS ci ratio: 6.442691e-01	ci left: 3.602246e-04	ci right 7.119178e-04	k: 36	n:70000
SFRS11   70000 perm   18 sec   (3822 perm/sec)   p_kst 5.142857e-04   p_cons 7.897429e-01   p_joint 5.142857e-04

Joint ci ratio: 6.357530e-01	ci left: 3.256629e-04	ci right 6.374395e-04	k: 37	n:80000
Cons ci ratio: 7.150442e-03	ci left: 7.869347e-01	ci right 7.925943e-01	k: 63182	n:80000
KS ci ratio: 6.357530e-01	ci left: 3.256629e-04	ci right 6.374395e-04	k: 37	n:80000
SFRS11   80000 perm   21 sec   (3854 perm/sec)   p_kst 4.625000e-04   p_cons 7.897750e-01   p_joint 4.625000e-04

Joint ci ratio: 5.656492e-01	ci left: 3.837337e-04	ci right 6.943850e-04	k: 47	n:90000
Cons ci ratio: 6.568956e-03	ci left: 7.956186e-01	ci right 8.008733e-01	k: 71843	n:90000
KS ci ratio: 5.656492e-01	ci left: 3.837337e-04	ci right 6.943850e-04	k: 47	n:90000
SFRS11   90000 perm   23 sec   (3866 perm/sec)   p_kst 5.222222e-04   p_cons 7.982556e-01   p_joint 5.222222e-04

Joint ci ratio: 5.284247e-01	ci left: 4.056898e-04	ci right 7.045249e-04	k: 54	n:100000
Cons ci ratio: 6.246471e-03	ci left: 7.949957e-01	ci right 7.999871e-01	k: 79750	n:100000
KS ci ratio: 5.284247e-01	ci left: 4.056898e-04	ci right 7.045249e-04	k: 54	n:100000
SFRS11   100000 perm   26 sec   (3860 perm/sec)   p_kst 5.400000e-04   p_cons 7.975000e-01   p_joint 5.400000e-04

Joint ci ratio: 4.976979e-01	ci left: 4.242091e-04	ci right 7.122806e-04	k: 61	n:110000
Cons ci ratio: 5.941355e-03	ci left: 7.958980e-01	ci right 8.006499e-01	k: 87811	n:110000
KS ci ratio: 4.976979e-01	ci left: 4.242091e-04	ci right 7.122806e-04	k: 61	n:110000
SFRS11   110000 perm   29 sec   (3844 perm/sec)   p_kst 5.545455e-04   p_cons 7.982818e-01   p_joint 5.545455e-04

Joint ci ratio: 4.752331e-01	ci left: 4.327260e-04	ci right 7.090102e-04	k: 67	n:120000
Cons ci ratio: 5.690594e-03	ci left: 7.958760e-01	ci right 8.004262e-01	k: 95779	n:120000
KS ci ratio: 4.752331e-01	ci left: 4.327260e-04	ci right 7.090102e-04	k: 67	n:120000
SFRS11   120000 perm   31 sec   (3815 perm/sec)   p_kst 5.583333e-04   p_cons 7.981583e-01   p_joint 5.583333e-04

Joint ci ratio: 4.495217e-01	ci left: 4.538128e-04	ci right 7.231252e-04	k: 75	n:130000
Cons ci ratio: 5.466899e-03	ci left: 7.959924e-01	ci right 8.003635e-01	k: 103764	n:130000
KS ci ratio: 4.495217e-01	ci left: 4.538128e-04	ci right 7.231252e-04	k: 75	n:130000
SFRS11   130000 perm   34 sec   (3775 perm/sec)   p_kst 5.769231e-04   p_cons 7.981846e-01   p_joint 5.769231e-04

Joint ci ratio: 4.301468e-01	ci left: 4.658622e-04	ci right 7.269745e-04	k: 82	n:140000
Cons ci ratio: 5.258671e-03	ci left: 7.966472e-01	ci right 8.008547e-01	k: 111826	n:140000
KS ci ratio: 4.301468e-01	ci left: 4.658622e-04	ci right 7.269745e-04	k: 82	n:140000
SFRS11   140000 perm   37 sec   (3748 perm/sec)   p_kst 5.857143e-04   p_cons 7.987571e-01   p_joint 5.857143e-04

Joint ci ratio: 4.201448e-01	ci left: 4.586174e-04	ci right 7.080143e-04	k: 86	n:150000
Cons ci ratio: 5.085475e-03	ci left: 7.963941e-01	ci right 8.004610e-01	k: 119765	n:150000
KS ci ratio: 4.201448e-01	ci left: 4.586174e-04	ci right 7.080143e-04	k: 86	n:150000
SFRS11   150000 perm   40 sec   (3713 perm/sec)   p_kst 5.733333e-04   p_cons 7.984333e-01   p_joint 5.733333e-04

Joint ci ratio: 4.041971e-01	ci left: 4.691686e-04	ci right 7.120239e-04	k: 93	n:160000
Cons ci ratio: 4.924786e-03	ci left: 7.964068e-01	ci right 8.003448e-01	k: 127741	n:160000
KS ci ratio: 4.041971e-01	ci left: 4.691686e-04	ci right 7.120239e-04	k: 93	n:160000
SFRS11   160000 perm   44 sec   (3676 perm/sec)   p_kst 5.812500e-04   p_cons 7.983813e-01   p_joint 5.812500e-04

Joint ci ratio: 3.861309e-01	ci left: 4.892540e-04	ci right 7.283123e-04	k: 102	n:170000
Cons ci ratio: 4.782004e-03	ci left: 7.961779e-01	ci right 8.000002e-01	k: 135676	n:170000
KS ci ratio: 3.861309e-01	ci left: 4.892540e-04	ci right 7.283123e-04	k: 102	n:170000
SFRS11   170000 perm   47 sec   (3639 perm/sec)   p_kst 6.000000e-04   p_cons 7.980941e-01   p_joint 6.000000e-04

Joint ci ratio: 3.770880e-01	ci left: 4.871864e-04	ci right 7.182808e-04	k: 107	n:180000
Cons ci ratio: 4.646787e-03	ci left: 7.962659e-01	ci right 7.999801e-01	k: 143663	n:180000
KS ci ratio: 3.770880e-01	ci left: 4.871864e-04	ci right 7.182808e-04	k: 107	n:180000
SFRS11   180000 perm   50 sec   (3600 perm/sec)   p_kst 5.944444e-04   p_cons 7.981278e-01   p_joint 5.944444e-04

Joint ci ratio: 3.670305e-01	ci left: 4.901717e-04	ci right 7.149947e-04	k: 113	n:190000
Cons ci ratio: 4.524347e-03	ci left: 7.962087e-01	ci right 7.998244e-01	k: 151624	n:190000
KS ci ratio: 3.670305e-01	ci left: 4.901717e-04	ci right 7.149947e-04	k: 113	n:190000
SFRS11   190000 perm   53 sec   (3561 perm/sec)   p_kst 5.947368e-04   p_cons 7.980211e-01   p_joint 5.947368e-04

Joint ci ratio: 3.607579e-01	ci left: 4.838342e-04	ci right 7.010664e-04	k: 117	n:200000
Cons ci ratio: 4.407956e-03	ci left: 7.963891e-01	ci right 7.999123e-01	k: 159631	n:200000
KS ci ratio: 3.607579e-01	ci left: 4.838342e-04	ci right 7.010664e-04	k: 117	n:200000
SFRS11   200000 perm   57 sec   (3520 perm/sec)   p_kst 5.850000e-04   p_cons 7.981550e-01   p_joint 5.850000e-04

Joint ci ratio: 3.519216e-01	ci left: 4.868088e-04	ci right 6.988006e-04	k: 123	n:210000
Cons ci ratio: 4.298453e-03	ci left: 7.966776e-01	ci right 8.001142e-01	k: 167664	n:210000
KS ci ratio: 3.519216e-01	ci left: 4.868088e-04	ci right 6.988006e-04	k: 123	n:210000
SFRS11   210000 perm   60 sec   (3477 perm/sec)   p_kst 5.857143e-04   p_cons 7.984000e-01   p_joint 5.857143e-04

Joint ci ratio: 3.360326e-01	ci left: 5.145184e-04	ci right 7.262720e-04	k: 135	n:220000
Cons ci ratio: 4.199209e-03	ci left: 7.967493e-01	ci right 8.001065e-01	k: 175655	n:220000
KS ci ratio: 3.360326e-01	ci left: 5.145184e-04	ci right 7.262720e-04	k: 135	n:220000
SFRS11   220000 perm   64 sec   (3438 perm/sec)   p_kst 6.136364e-04   p_cons 7.984318e-01   p_joint 6.136364e-04

Joint ci ratio: 3.265637e-01	ci left: 5.240387e-04	ci right 7.323592e-04	k: 143	n:230000
Cons ci ratio: 4.104650e-03	ci left: 7.969638e-01	ci right 8.002461e-01	k: 183680	n:230000
KS ci ratio: 3.265637e-01	ci left: 5.240387e-04	ci right 7.323592e-04	k: 143	n:230000
SFRS11   230000 perm   68 sec   (3399 perm/sec)   p_kst 6.217391e-04   p_cons 7.986087e-01   p_joint 6.217391e-04

Joint ci ratio: 3.168115e-01	ci left: 5.366772e-04	ci right 7.423605e-04	k: 152	n:240000
Cons ci ratio: 4.015733e-03	ci left: 7.971988e-01	ci right 8.004107e-01	k: 191714	n:240000
KS ci ratio: 3.168115e-01	ci left: 5.366772e-04	ci right 7.423605e-04	k: 152	n:240000
SFRS11   240000 perm   71 sec   (3359 perm/sec)   p_kst 6.333333e-04   p_cons 7.988083e-01   p_joint 6.333333e-04

Joint ci ratio: 3.069374e-01	ci left: 5.520812e-04	ci right 7.557850e-04	k: 162	n:250000
Cons ci ratio: 3.932644e-03	ci left: 7.973915e-01	ci right 8.005375e-01	k: 199742	n:250000
KS ci ratio: 3.069374e-01	ci left: 5.520812e-04	ci right 7.557850e-04	k: 162	n:250000
SFRS11   250000 perm   75 sec   (3318 perm/sec)   p_kst 6.480000e-04   p_cons 7.989680e-01   p_joint 6.480000e-04

Joint ci ratio: 3.014399e-01	ci left: 5.521632e-04	ci right 7.515491e-04	k: 168	n:260000
Cons ci ratio: 3.855013e-03	ci left: 7.975276e-01	ci right 8.006118e-01	k: 207759	n:260000
KS ci ratio: 3.014399e-01	ci left: 5.521632e-04	ci right 7.515491e-04	k: 168	n:260000
SFRS11   260000 perm   79 sec   (3279 perm/sec)   p_kst 6.461538e-04   p_cons 7.990731e-01   p_joint 6.461538e-04

Joint ci ratio: 2.988014e-01	ci left: 5.419868e-04	ci right 7.356599e-04	k: 171	n:270000
Cons ci ratio: 3.781542e-03	ci left: 7.976765e-01	ci right 8.007023e-01	k: 215782	n:270000
KS ci ratio: 2.988014e-01	ci left: 5.419868e-04	ci right 7.356599e-04	k: 171	n:270000
SFRS11   270000 perm   83 sec   (3239 perm/sec)   p_kst 6.333333e-04   p_cons 7.991926e-01   p_joint 6.333333e-04

Joint ci ratio: 2.920851e-01	ci left: 5.490848e-04	ci right 7.400686e-04	k: 179	n:280000
Cons ci ratio: 3.712860e-03	ci left: 7.977507e-01	ci right 8.007217e-01	k: 223787	n:280000
KS ci ratio: 2.920851e-01	ci left: 5.490848e-04	ci right 7.400686e-04	k: 179	n:280000
SFRS11   280000 perm   87 sec   (3201 perm/sec)   p_kst 6.392857e-04   p_cons 7.992393e-01   p_joint 6.392857e-04

Joint ci ratio: 2.881117e-01	ci left: 5.461377e-04	ci right 7.330416e-04	k: 184	n:290000
Cons ci ratio: 3.650494e-03	ci left: 7.975817e-01	ci right 8.005020e-01	k: 231723	n:290000
KS ci ratio: 2.881117e-01	ci left: 5.461377e-04	ci right 7.330416e-04	k: 184	n:290000
SFRS11   290000 perm   92 sec   (3163 perm/sec)   p_kst 6.344828e-04   p_cons 7.990448e-01   p_joint 6.344828e-04

Joint ci ratio: 2.828106e-01	ci left: 5.495963e-04	ci right 7.336059e-04	k: 191	n:300000
Cons ci ratio: 3.592171e-03	ci left: 7.973341e-01	ci right 8.002067e-01	k: 239632	n:300000
KS ci ratio: 2.828106e-01	ci left: 5.495963e-04	ci right 7.336059e-04	k: 191	n:300000
SFRS11   300000 perm   96 sec   (3126 perm/sec)   p_kst 6.366667e-04   p_cons 7.987733e-01   p_joint 6.366667e-04

Joint ci ratio: 2.770960e-01	ci left: 5.558627e-04	ci right 7.375542e-04	k: 199	n:310000
Cons ci ratio: 3.532294e-03	ci left: 7.974911e-01	ci right 8.003162e-01	k: 247661	n:310000
KS ci ratio: 2.770960e-01	ci left: 5.558627e-04	ci right 7.375542e-04	k: 199	n:310000
SFRS11   310000 perm   100 sec   (3090 perm/sec)   p_kst 6.419355e-04   p_cons 7.989065e-01   p_joint 6.419355e-04

Joint ci ratio: 2.750424e-01	ci left: 5.472177e-04	ci right 7.245285e-04	k: 202	n:320000
Cons ci ratio: 3.478762e-03	ci left: 7.973190e-01	ci right 8.001006e-01	k: 255588	n:320000
KS ci ratio: 2.750424e-01	ci left: 5.472177e-04	ci right 7.245285e-04	k: 202	n:320000
SFRS11   320000 perm   105 sec   (3052 perm/sec)   p_kst 6.312500e-04   p_cons 7.987125e-01   p_joint 6.312500e-04

Joint ci ratio: 2.697772e-01	ci left: 5.532225e-04	ci right 7.284668e-04	k: 210	n:330000
Cons ci ratio: 3.422972e-03	ci left: 7.975921e-01	ci right 8.003299e-01	k: 263658	n:330000
KS ci ratio: 2.697772e-01	ci left: 5.532225e-04	ci right 7.284668e-04	k: 210	n:330000
SFRS11   330000 perm   109 sec   (3017 perm/sec)   p_kst 6.363636e-04   p_cons 7.989636e-01   p_joint 6.363636e-04

Joint ci ratio: 2.666371e-01	ci left: 5.506683e-04	ci right 7.227338e-04	k: 215	n:340000
Cons ci ratio: 3.370426e-03	ci left: 7.977875e-01	ci right 8.004838e-01	k: 271707	n:340000
KS ci ratio: 2.666371e-01	ci left: 5.506683e-04	ci right 7.227338e-04	k: 215	n:340000
SFRS11   340000 perm   114 sec   (2984 perm/sec)   p_kst 6.323529e-04   p_cons 7.991382e-01   p_joint 6.323529e-04

Joint ci ratio: 2.630093e-01	ci left: 5.509398e-04	ci right 7.203626e-04	k: 221	n:350000
Cons ci ratio: 3.322767e-03	ci left: 7.977257e-01	ci right 8.003836e-01	k: 279670	n:350000
KS ci ratio: 2.630093e-01	ci left: 5.509398e-04	ci right 7.203626e-04	k: 221	n:350000
SFRS11   350000 perm   119 sec   (2945 perm/sec)   p_kst 6.314286e-04   p_cons 7.990571e-01   p_joint 6.314286e-04

Joint ci ratio: 2.612513e-01	ci left: 5.434214e-04	ci right 7.092326e-04	k: 224	n:360000
Cons ci ratio: 3.277810e-03	ci left: 7.975952e-01	ci right 8.002166e-01	k: 287607	n:360000
KS ci ratio: 2.612513e-01	ci left: 5.434214e-04	ci right 7.092326e-04	k: 224	n:360000
SFRS11   360000 perm   124 sec   (2911 perm/sec)   p_kst 6.222222e-04   p_cons 7.989083e-01   p_joint 6.222222e-04

Joint ci ratio: 2.589604e-01	ci left: 5.388402e-04	ci right 7.015785e-04	k: 228	n:370000
Cons ci ratio: 3.231446e-03	ci left: 7.977890e-01	ci right 8.003739e-01	k: 295661	n:370000
KS ci ratio: 2.589604e-01	ci left: 5.388402e-04	ci right 7.015785e-04	k: 228	n:370000
SFRS11   370000 perm   129 sec   (2878 perm/sec)   p_kst 6.162162e-04   p_cons 7.990838e-01   p_joint 6.162162e-04

Joint ci ratio: 2.556332e-01	ci left: 5.394315e-04	ci right 6.999214e-04	k: 234	n:380000
Cons ci ratio: 3.190443e-03	ci left: 7.976246e-01	ci right 8.001761e-01	k: 303583	n:380000
KS ci ratio: 2.556332e-01	ci left: 5.394315e-04	ci right 6.999214e-04	k: 234	n:380000
SFRS11   380000 perm   134 sec   (2846 perm/sec)   p_kst 6.157895e-04   p_cons 7.989026e-01   p_joint 6.157895e-04

Joint ci ratio: 2.524310e-01	ci left: 5.400051e-04	ci right 6.983367e-04	k: 240	n:390000
Cons ci ratio: 3.150104e-03	ci left: 7.975563e-01	ci right 8.000752e-01	k: 311539	n:390000
KS ci ratio: 2.524310e-01	ci left: 5.400051e-04	ci right 6.983367e-04	k: 240	n:390000
SFRS11   390000 perm   139 sec   (2814 perm/sec)   p_kst 6.153846e-04   p_cons 7.988179e-01   p_joint 6.153846e-04

Joint ci ratio: 2.488428e-01	ci left: 5.429060e-04	ci right 6.994751e-04	k: 247	n:400000
Cons ci ratio: 3.110434e-03	ci left: 7.975768e-01	ci right 8.000639e-01	k: 319529	n:400000
KS ci ratio: 2.488428e-01	ci left: 5.429060e-04	ci right 6.994751e-04	k: 247	n:400000
SFRS11   400000 perm   144 sec   (2781 perm/sec)   p_kst 6.175000e-04   p_cons 7.988225e-01   p_joint 6.175000e-04

Joint ci ratio: 2.458862e-01	ci left: 5.433914e-04	ci right 6.979542e-04	k: 253	n:410000
Cons ci ratio: 3.072460e-03	ci left: 7.975720e-01	ci right 8.000287e-01	k: 327509	n:410000
KS ci ratio: 2.458862e-01	ci left: 5.433914e-04	ci right 6.979542e-04	k: 253	n:410000
SFRS11   410000 perm   149 sec   (2751 perm/sec)   p_kst 6.170732e-04   p_cons 7.988024e-01   p_joint 6.170732e-04

Joint ci ratio: 2.416416e-01	ci left: 5.505736e-04	ci right 7.040707e-04	k: 262	n:420000
Cons ci ratio: 3.035865e-03	ci left: 7.975652e-01	ci right 7.999926e-01	k: 335488	n:420000
KS ci ratio: 2.416416e-01	ci left: 5.505736e-04	ci right 7.040707e-04	k: 262	n:420000
SFRS11   420000 perm   154 sec   (2723 perm/sec)   p_kst 6.238095e-04   p_cons 7.987810e-01   p_joint 6.238095e-04

Joint ci ratio: 2.367401e-01	ci left: 5.618184e-04	ci right 7.148079e-04	k: 273	n:430000
Cons ci ratio: 3.000005e-03	ci left: 7.976172e-01	ci right 8.000160e-01	k: 343492	n:430000
KS ci ratio: 2.367401e-01	ci left: 5.618184e-04	ci right 7.148079e-04	k: 273	n:430000
SFRS11   430000 perm   160 sec   (2691 perm/sec)   p_kst 6.348837e-04   p_cons 7.988186e-01   p_joint 6.348837e-04

Joint ci ratio: 2.350314e-01	ci left: 5.576034e-04	ci right 7.081897e-04	k: 277	n:440000
Cons ci ratio: 2.964066e-03	ci left: 7.978105e-01	ci right 8.001810e-01	k: 351559	n:440000
KS ci ratio: 2.350314e-01	ci left: 5.576034e-04	ci right 7.081897e-04	k: 277	n:440000
SFRS11   440000 perm   165 sec   (2662 perm/sec)   p_kst 6.295455e-04   p_cons 7.989977e-01   p_joint 6.295455e-04

Joint ci ratio: 2.309140e-01	ci left: 5.661378e-04	ci right 7.159686e-04	k: 287	n:450000
Cons ci ratio: 2.930439e-03	ci left: 7.978795e-01	ci right 8.002233e-01	k: 359574	n:450000
KS ci ratio: 2.309140e-01	ci left: 5.661378e-04	ci right 7.159686e-04	k: 287	n:450000
SFRS11   450000 perm   171 sec   (2632 perm/sec)   p_kst 6.377778e-04   p_cons 7.990533e-01   p_joint 6.377778e-04

Joint ci ratio: 2.285457e-01	ci left: 5.661233e-04	ci right 7.141969e-04	k: 293	n:460000
Cons ci ratio: 2.898912e-03	ci left: 7.978368e-01	ci right 8.001551e-01	k: 367539	n:460000
KS ci ratio: 2.285457e-01	ci left: 5.661233e-04	ci right 7.141969e-04	k: 293	n:460000
SFRS11   460000 perm   177 sec   (2605 perm/sec)   p_kst 6.369565e-04   p_cons 7.989978e-01   p_joint 6.369565e-04

Joint ci ratio: 2.273893e-01	ci left: 5.600964e-04	ci right 7.057484e-04	k: 296	n:470000
Cons ci ratio: 2.867888e-03	ci left: 7.978514e-01	ci right 8.001449e-01	k: 375530	n:470000
KS ci ratio: 2.273893e-01	ci left: 5.600964e-04	ci right 7.057484e-04	k: 296	n:470000
SFRS11   470000 perm   182 sec   (2579 perm/sec)   p_kst 6.297872e-04   p_cons 7.990000e-01   p_joint 6.297872e-04

Joint ci ratio: 2.254994e-01	ci left: 5.582535e-04	ci right 7.020520e-04	k: 301	n:480000
Cons ci ratio: 2.838648e-03	ci left: 7.977737e-01	ci right 8.000435e-01	k: 383477	n:480000
KS ci ratio: 2.254994e-01	ci left: 5.582535e-04	ci right 7.020520e-04	k: 301	n:480000
SFRS11   480000 perm   188 sec   (2554 perm/sec)   p_kst 6.270833e-04   p_cons 7.989104e-01   p_joint 6.270833e-04

Joint ci ratio: 2.243885e-01	ci left: 5.526379e-04	ci right 6.941915e-04	k: 304	n:490000
Cons ci ratio: 2.809285e-03	ci left: 7.978138e-01	ci right 8.000602e-01	k: 391480	n:490000
KS ci ratio: 2.243885e-01	ci left: 5.526379e-04	ci right 6.941915e-04	k: 304	n:490000
SFRS11   490000 perm   194 sec   (2529 perm/sec)   p_kst 6.204082e-04   p_cons 7.989388e-01   p_joint 6.204082e-04

Joint ci ratio: 2.211487e-01	ci left: 5.585810e-04	ci right 6.993101e-04	k: 313	n:500000
Cons ci ratio: 2.779637e-03	ci left: 7.979887e-01	ci right 8.002119e-01	k: 399551	n:500000
KS ci ratio: 2.211487e-01	ci left: 5.585810e-04	ci right 6.993101e-04	k: 313	n:500000
SFRS11   500000 perm   200 sec   (2504 perm/sec)   p_kst 6.260000e-04   p_cons 7.991020e-01   p_joint 6.260000e-04

Joint ci ratio: 2.197539e-01	ci left: 5.550384e-04	ci right 6.938739e-04	k: 317	n:510000
Cons ci ratio: 2.752184e-03	ci left: 7.980075e-01	ci right 8.002087e-01	k: 407546	n:510000
KS ci ratio: 2.197539e-01	ci left: 5.550384e-04	ci right 6.938739e-04	k: 317	n:510000
SFRS11   510000 perm   206 sec   (2479 perm/sec)   p_kst 6.215686e-04   p_cons 7.991098e-01   p_joint 6.215686e-04

Joint ci ratio: 2.180467e-01	ci left: 5.534527e-04	ci right 6.906719e-04	k: 322	n:520000
Cons ci ratio: 2.724826e-03	ci left: 7.981086e-01	ci right 8.002881e-01	k: 415584	n:520000
KS ci ratio: 2.180467e-01	ci left: 5.534527e-04	ci right 6.906719e-04	k: 322	n:520000
SFRS11   520000 perm   212 sec   (2455 perm/sec)   p_kst 6.192308e-04   p_cons 7.992000e-01   p_joint 6.192308e-04

Joint ci ratio: 2.167094e-01	ci left: 5.501464e-04	ci right 6.855980e-04	k: 326	n:530000
Cons ci ratio: 2.698919e-03	ci left: 7.981284e-01	ci right 8.002872e-01	k: 423581	n:530000
KS ci ratio: 2.167094e-01	ci left: 5.501464e-04	ci right 6.855980e-04	k: 326	n:530000
SFRS11   530000 perm   218 sec   (2432 perm/sec)   p_kst 6.150943e-04   p_cons 7.992094e-01   p_joint 6.150943e-04

Joint ci ratio: 2.137868e-01	ci left: 5.557269e-04	ci right 6.904652e-04	k: 335	n:540000
Cons ci ratio: 2.673397e-03	ci left: 7.981884e-01	ci right 8.003269e-01	k: 431600	n:540000
KS ci ratio: 2.137868e-01	ci left: 5.557269e-04	ci right 6.904652e-04	k: 335	n:540000
SFRS11   540000 perm   224 sec   (2409 perm/sec)   p_kst 6.203704e-04   p_cons 7.992593e-01   p_joint 6.203704e-04

Joint ci ratio: 2.112859e-01	ci left: 5.593942e-04	ci right 6.932297e-04	k: 343	n:550000
Cons ci ratio: 2.648840e-03	ci left: 7.982153e-01	ci right 8.003343e-01	k: 439602	n:550000
KS ci ratio: 2.112859e-01	ci left: 5.593942e-04	ci right 6.932297e-04	k: 343	n:550000
SFRS11   550000 perm   231 sec   (2386 perm/sec)   p_kst 6.236364e-04   p_cons 7.992764e-01   p_joint 6.236364e-04

Joint ci ratio: 2.106752e-01	ci left: 5.527875e-04	ci right 6.846107e-04	k: 345	n:560000
Cons ci ratio: 2.625255e-03	ci left: 7.982038e-01	ci right 8.003038e-01	k: 447583	n:560000
KS ci ratio: 2.106752e-01	ci left: 5.527875e-04	ci right 6.846107e-04	k: 345	n:560000
SFRS11   560000 perm   237 sec   (2363 perm/sec)   p_kst 6.160714e-04   p_cons 7.992554e-01   p_joint 6.160714e-04

Joint ci ratio: 2.079870e-01	ci left: 5.580515e-04	ci right 6.892158e-04	k: 354	n:570000
Cons ci ratio: 2.601862e-03	ci left: 7.982455e-01	ci right 8.003269e-01	k: 455594	n:570000
KS ci ratio: 2.079870e-01	ci left: 5.580515e-04	ci right 6.892158e-04	k: 354	n:570000
SFRS11   570000 perm   243 sec   (2341 perm/sec)   p_kst 6.210526e-04   p_cons 7.992877e-01   p_joint 6.210526e-04

Joint ci ratio: 2.059661e-01	ci left: 5.598734e-04	ci right 6.900263e-04	k: 361	n:580000
Cons ci ratio: 2.580109e-03	ci left: 7.981580e-01	ci right 8.002217e-01	k: 463531	n:580000
KS ci ratio: 2.059661e-01	ci left: 5.598734e-04	ci right 6.900263e-04	k: 361	n:580000
SFRS11   580000 perm   250 sec   (2319 perm/sec)   p_kst 6.224138e-04   p_cons 7.991914e-01   p_joint 6.224138e-04

Joint ci ratio: 2.042802e-01	ci left: 5.600312e-04	ci right 6.890221e-04	k: 367	n:590000
Cons ci ratio: 2.558190e-03	ci left: 7.981619e-01	ci right 8.002080e-01	k: 471520	n:590000
KS ci ratio: 2.042802e-01	ci left: 5.600312e-04	ci right 6.890221e-04	k: 367	n:590000
SFRS11   590000 perm   257 sec   (2297 perm/sec)   p_kst 6.220339e-04   p_cons 7.991864e-01   p_joint 6.220339e-04

Joint ci ratio: 2.020950e-01	ci left: 5.633524e-04	ci right 6.915490e-04	k: 375	n:600000
Cons ci ratio: 2.537004e-03	ci left: 7.981423e-01	ci right 8.001714e-01	k: 479495	n:600000
KS ci ratio: 2.020950e-01	ci left: 5.633524e-04	ci right 6.915490e-04	k: 375	n:600000
SFRS11   600000 perm   264 sec   (2275 perm/sec)   p_kst 6.250000e-04   p_cons 7.991583e-01   p_joint 6.250000e-04

Joint ci ratio: 2.005017e-01	ci left: 5.634574e-04	ci right 6.905433e-04	k: 381	n:610000
Cons ci ratio: 2.516503e-03	ci left: 7.981021e-01	ci right 8.001147e-01	k: 487457	n:610000
KS ci ratio: 2.005017e-01	ci left: 5.634574e-04	ci right 6.905433e-04	k: 381	n:610000
SFRS11   610000 perm   271 sec   (2253 perm/sec)   p_kst 6.245902e-04   p_cons 7.991098e-01   p_joint 6.245902e-04

Joint ci ratio: 1.992024e-01	ci left: 5.620303e-04	ci right 6.878731e-04	k: 386	n:620000
Cons ci ratio: 2.495852e-03	ci left: 7.981457e-01	ci right 8.001418e-01	k: 495470	n:620000
KS ci ratio: 1.992024e-01	ci left: 5.620303e-04	ci right 6.878731e-04	k: 386	n:620000
SFRS11   620000 perm   278 sec   (2232 perm/sec)   p_kst 6.225806e-04   p_cons 7.991452e-01   p_joint 6.225806e-04

Joint ci ratio: 1.979281e-01	ci left: 5.606511e-04	ci right 6.852851e-04	k: 391	n:630000
Cons ci ratio: 2.476215e-03	ci left: 7.981212e-01	ci right 8.001015e-01	k: 503441	n:630000
KS ci ratio: 1.979281e-01	ci left: 5.606511e-04	ci right 6.852851e-04	k: 391	n:630000
SFRS11   630000 perm   285 sec   (2211 perm/sec)   p_kst 6.206349e-04   p_cons 7.991127e-01   p_joint 6.206349e-04

Joint ci ratio: 1.966780e-01	ci left: 5.593175e-04	ci right 6.827756e-04	k: 396	n:640000
Cons ci ratio: 2.455922e-03	ci left: 7.982430e-01	ci right 8.002074e-01	k: 511505	n:640000
KS ci ratio: 1.966780e-01	ci left: 5.593175e-04	ci right 6.827756e-04	k: 396	n:640000
SFRS11   640000 perm   292 sec   (2191 perm/sec)   p_kst 6.187500e-04   p_cons 7.992266e-01   p_joint 6.187500e-04

Joint ci ratio: 1.949665e-01	ci left: 5.609539e-04	ci right 6.835678e-04	k: 403	n:650000
Cons ci ratio: 2.437591e-03	ci left: 7.981670e-01	ci right 8.001165e-01	k: 519443	n:650000
KS ci ratio: 1.949665e-01	ci left: 5.609539e-04	ci right 6.835678e-04	k: 403	n:650000
SFRS11   650000 perm   299 sec   (2172 perm/sec)   p_kst 6.200000e-04   p_cons 7.991431e-01   p_joint 6.200000e-04

Joint ci ratio: 1.921331e-01	ci left: 5.697557e-04	ci right 6.922722e-04	k: 415	n:660000
Cons ci ratio: 2.419275e-03	ci left: 7.981449e-01	ci right 8.000797e-01	k: 527415	n:660000
KS ci ratio: 1.921331e-01	ci left: 5.697557e-04	ci right 6.922722e-04	k: 415	n:660000
SFRS11   660000 perm   306 sec   (2154 perm/sec)   p_kst 6.287879e-04   p_cons 7.991136e-01   p_joint 6.287879e-04

Joint ci ratio: 1.914445e-01	ci left: 5.655144e-04	ci right 6.866323e-04	k: 418	n:670000
Cons ci ratio: 2.401344e-03	ci left: 7.981266e-01	ci right 8.000469e-01	k: 535389	n:670000
KS ci ratio: 1.914445e-01	ci left: 5.655144e-04	ci right 6.866323e-04	k: 418	n:670000
SFRS11   670000 perm   314 sec   (2136 perm/sec)   p_kst 6.238806e-04   p_cons 7.990881e-01   p_joint 6.238806e-04

Joint ci ratio: 1.898650e-01	ci left: 5.670008e-04	ci right 6.873196e-04	k: 425	n:680000
Cons ci ratio: 2.383850e-03	ci left: 7.981029e-01	ci right 8.000092e-01	k: 543359	n:680000
KS ci ratio: 1.898650e-01	ci left: 5.670008e-04	ci right 6.873196e-04	k: 425	n:680000
SFRS11   680000 perm   321 sec   (2117 perm/sec)   p_kst 6.250000e-04   p_cons 7.990574e-01   p_joint 6.250000e-04

Joint ci ratio: 1.883239e-01	ci left: 5.684481e-04	ci right 6.879830e-04	k: 432	n:690000
Cons ci ratio: 2.365793e-03	ci left: 7.982078e-01	ci right 8.000998e-01	k: 551417	n:690000
KS ci ratio: 1.883239e-01	ci left: 5.684481e-04	ci right 6.879830e-04	k: 432	n:690000
SFRS11   690000 perm   329 sec   (2099 perm/sec)   p_kst 6.260870e-04   p_cons 7.991551e-01   p_joint 6.260870e-04

Joint ci ratio: 1.859758e-01	ci left: 5.753057e-04	ci right 6.946040e-04	k: 443	n:700000
Cons ci ratio: 2.349205e-03	ci left: 7.981637e-01	ci right 8.000424e-01	k: 559373	n:700000
KS ci ratio: 1.859758e-01	ci left: 5.753057e-04	ci right 6.946040e-04	k: 443	n:700000
SFRS11   700000 perm   336 sec   (2082 perm/sec)   p_kst 6.328571e-04   p_cons 7.991043e-01   p_joint 6.328571e-04

Joint ci ratio: 1.847319e-01	ci left: 5.752614e-04	ci right 6.936633e-04	k: 449	n:710000
Cons ci ratio: 2.332511e-03	ci left: 7.981830e-01	ci right 8.000483e-01	k: 567373	n:710000
KS ci ratio: 1.847319e-01	ci left: 5.752614e-04	ci right 6.936633e-04	k: 449	n:710000
SFRS11   710000 perm   344 sec   (2063 perm/sec)   p_kst 6.323944e-04   p_cons 7.991169e-01   p_joint 6.323944e-04

Joint ci ratio: 1.835126e-01	ci left: 5.752209e-04	ci right 6.927461e-04	k: 455	n:720000
Cons ci ratio: 2.315947e-03	ci left: 7.982324e-01	ci right 8.000846e-01	k: 575395	n:720000
KS ci ratio: 1.835126e-01	ci left: 5.752209e-04	ci right 6.927461e-04	k: 455	n:720000
SFRS11   720000 perm   352 sec   (2044 perm/sec)   p_kst 6.319444e-04   p_cons 7.991597e-01   p_joint 6.319444e-04

Joint ci ratio: 1.825148e-01	ci left: 5.738767e-04	ci right 6.904192e-04	k: 460	n:730000
Cons ci ratio: 2.299839e-03	ci left: 7.982654e-01	ci right 8.001048e-01	k: 583406	n:730000
KS ci ratio: 1.825148e-01	ci left: 5.738767e-04	ci right 6.904192e-04	k: 460	n:730000
SFRS11   730000 perm   360 sec   (2027 perm/sec)   p_kst 6.301370e-04   p_cons 7.991863e-01   p_joint 6.301370e-04

Joint ci ratio: 1.813386e-01	ci left: 5.738605e-04	ci right 6.895662e-04	k: 466	n:740000
Cons ci ratio: 2.284169e-03	ci left: 7.982827e-01	ci right 8.001095e-01	k: 591406	n:740000
KS ci ratio: 1.813386e-01	ci left: 5.738605e-04	ci right 6.895662e-04	k: 466	n:740000
SFRS11   740000 perm   368 sec   (2011 perm/sec)   p_kst 6.297297e-04   p_cons 7.991973e-01   p_joint 6.297297e-04

Joint ci ratio: 1.801848e-01	ci left: 5.738470e-04	ci right 6.887335e-04	k: 472	n:750000
Cons ci ratio: 2.268541e-03	ci left: 7.983383e-01	ci right 8.001527e-01	k: 599435	n:750000
KS ci ratio: 1.801848e-01	ci left: 5.738470e-04	ci right 6.887335e-04	k: 472	n:750000
SFRS11   750000 perm   376 sec   (1994 perm/sec)   p_kst 6.293333e-04   p_cons 7.992467e-01   p_joint 6.293333e-04

Joint ci ratio: 1.786799e-01	ci left: 5.763500e-04	ci right 6.906698e-04	k: 480	n:760000
Cons ci ratio: 2.253442e-03	ci left: 7.983621e-01	ci right 8.001645e-01	k: 607441	n:760000
KS ci ratio: 1.786799e-01	ci left: 5.763500e-04	ci right 6.906698e-04	k: 480	n:760000
SFRS11   760000 perm   384 sec   (1978 perm/sec)   p_kst 6.315789e-04   p_cons 7.992645e-01   p_joint 6.315789e-04

Joint ci ratio: 1.772121e-01	ci left: 5.787919e-04	ci right 6.925518e-04	k: 488	n:770000
Cons ci ratio: 2.238667e-03	ci left: 7.983815e-01	ci right 8.001721e-01	k: 615444	n:770000
KS ci ratio: 1.772121e-01	ci left: 5.787919e-04	ci right 6.925518e-04	k: 488	n:770000
SFRS11   770000 perm   392 sec   (1962 perm/sec)   p_kst 6.337662e-04   p_cons 7.992779e-01   p_joint 6.337662e-04

Joint ci ratio: 1.768513e-01	ci left: 5.738218e-04	ci right 6.863508e-04	k: 490	n:780000
Cons ci ratio: 2.224278e-03	ci left: 7.983863e-01	ci right 8.001653e-01	k: 623436	n:780000
KS ci ratio: 1.768513e-01	ci left: 5.738218e-04	ci right 6.863508e-04	k: 490	n:780000
SFRS11   780000 perm   401 sec   (1947 perm/sec)   p_kst 6.282051e-04   p_cons 7.992769e-01   p_joint 6.282051e-04

Joint ci ratio: 1.757806e-01	ci left: 5.738180e-04	ci right 6.855925e-04	k: 496	n:790000
Cons ci ratio: 2.209970e-03	ci left: 7.984189e-01	ci right 8.001865e-01	k: 631450	n:790000
KS ci ratio: 1.757806e-01	ci left: 5.738180e-04	ci right 6.855925e-04	k: 496	n:790000
SFRS11   790000 perm   409 sec   (1931 perm/sec)   p_kst 6.278481e-04   p_cons 7.993038e-01   p_joint 6.278481e-04

Joint ci ratio: 1.745556e-01	ci left: 5.750117e-04	ci right 6.861558e-04	k: 503	n:800000
Cons ci ratio: 2.195738e-03	ci left: 7.984795e-01	ci right 8.002359e-01	k: 639487	n:800000
KS ci ratio: 1.745556e-01	ci left: 5.750117e-04	ci right 6.861558e-04	k: 503	n:800000
SFRS11   800000 perm   417 sec   (1916 perm/sec)   p_kst 6.287500e-04   p_cons 7.993588e-01   p_joint 6.287500e-04

Joint ci ratio: 1.738672e-01	ci left: 5.726357e-04	ci right 6.828383e-04	k: 507	n:810000
Cons ci ratio: 2.181996e-03	ci left: 7.985065e-01	ci right 8.002519e-01	k: 647498	n:810000
KS ci ratio: 1.738672e-01	ci left: 5.726357e-04	ci right 6.828383e-04	k: 507	n:810000
SFRS11   810000 perm   426 sec   (1902 perm/sec)   p_kst 6.259259e-04   p_cons 7.993802e-01   p_joint 6.259259e-04

Joint ci ratio: 1.723469e-01	ci left: 5.761525e-04	ci right 6.859615e-04	k: 516	n:820000
Cons ci ratio: 2.168327e-03	ci left: 7.985597e-01	ci right 8.002943e-01	k: 655531	n:820000
KS ci ratio: 1.723469e-01	ci left: 5.761525e-04	ci right 6.859615e-04	k: 516	n:820000
SFRS11   820000 perm   434 sec   (1887 perm/sec)   p_kst 6.292683e-04   p_cons 7.994280e-01   p_joint 6.292683e-04

Joint ci ratio: 1.715197e-01	ci left: 5.749757e-04	ci right 6.839801e-04	k: 521	n:830000
Cons ci ratio: 2.155211e-03	ci left: 7.985670e-01	ci right 8.002911e-01	k: 663527	n:830000
KS ci ratio: 1.715197e-01	ci left: 5.749757e-04	ci right 6.839801e-04	k: 521	n:830000
SFRS11   830000 perm   443 sec   (1873 perm/sec)   p_kst 6.277108e-04   p_cons 7.994301e-01   p_joint 6.277108e-04

Joint ci ratio: 1.694223e-01	ci left: 5.829469e-04	ci right 6.919730e-04	k: 534	n:840000
Cons ci ratio: 2.142529e-03	ci left: 7.985444e-01	ci right 8.002583e-01	k: 671498	n:840000
KS ci ratio: 1.694223e-01	ci left: 5.829469e-04	ci right 6.919730e-04	k: 534	n:840000
SFRS11   840000 perm   452 sec   (1858 perm/sec)   p_kst 6.357143e-04   p_cons 7.994024e-01   p_joint 6.357143e-04

Joint ci ratio: 1.687927e-01	ci left: 5.805953e-04	ci right 6.887371e-04	k: 538	n:850000
Cons ci ratio: 2.129366e-03	ci left: 7.986284e-01	ci right 8.003319e-01	k: 679559	n:850000
KS ci ratio: 1.687927e-01	ci left: 5.805953e-04	ci right 6.887371e-04	k: 538	n:850000
SFRS11   850000 perm   461 sec   (1843 perm/sec)   p_kst 6.329412e-04   p_cons 7.994812e-01   p_joint 6.329412e-04

Joint ci ratio: 1.672480e-01	ci left: 5.849833e-04	ci right 6.928448e-04	k: 548	n:860000
Cons ci ratio: 2.117148e-03	ci left: 7.986033e-01	ci right 8.002970e-01	k: 687528	n:860000
KS ci ratio: 1.672480e-01	ci left: 5.849833e-04	ci right 6.928448e-04	k: 548	n:860000
SFRS11   860000 perm   470 sec   (1829 perm/sec)   p_kst 6.372093e-04   p_cons 7.994512e-01   p_joint 6.372093e-04

Joint ci ratio: 1.663416e-01	ci left: 5.848680e-04	ci right 6.920653e-04	k: 554	n:870000
Cons ci ratio: 2.105175e-03	ci left: 7.985731e-01	ci right 8.002571e-01	k: 695492	n:870000
KS ci ratio: 1.663416e-01	ci left: 5.848680e-04	ci right 6.920653e-04	k: 554	n:870000
SFRS11   870000 perm   479 sec   (1816 perm/sec)   p_kst 6.367816e-04   p_cons 7.994161e-01   p_joint 6.367816e-04

Joint ci ratio: 1.655974e-01	ci left: 5.836676e-04	ci right 6.901185e-04	k: 559	n:880000
Cons ci ratio: 2.092840e-03	ci left: 7.986301e-01	ci right 8.003043e-01	k: 703532	n:880000
KS ci ratio: 1.655974e-01	ci left: 5.836676e-04	ci right 6.901185e-04	k: 559	n:880000
SFRS11   880000 perm   488 sec   (1802 perm/sec)   p_kst 6.352273e-04   p_cons 7.994682e-01   p_joint 6.352273e-04

Joint ci ratio: 1.648632e-01	ci left: 5.824952e-04	ci right 6.882145e-04	k: 564	n:890000
Cons ci ratio: 2.081156e-03	ci left: 7.986183e-01	ci right 8.002831e-01	k: 711512	n:890000
KS ci ratio: 1.648632e-01	ci left: 5.824952e-04	ci right 6.882145e-04	k: 564	n:890000
SFRS11   890000 perm   498 sec   (1789 perm/sec)   p_kst 6.337079e-04   p_cons 7.994517e-01   p_joint 6.337079e-04

Joint ci ratio: 1.637081e-01	ci left: 5.845465e-04	ci right 6.898216e-04	k: 572	n:900000
Cons ci ratio: 2.069178e-03	ci left: 7.986824e-01	ci right 8.003379e-01	k: 719560	n:900000
KS ci ratio: 1.637081e-01	ci left: 5.845465e-04	ci right 6.898216e-04	k: 572	n:900000
SFRS11   900000 perm   507 sec   (1776 perm/sec)   p_kst 6.355556e-04   p_cons 7.995111e-01   p_joint 6.355556e-04

Joint ci ratio: 1.628577e-01	ci left: 5.844469e-04	ci right 6.891038e-04	k: 578	n:910000
Cons ci ratio: 2.057962e-03	ci left: 7.986583e-01	ci right 8.003046e-01	k: 727529	n:910000
KS ci ratio: 1.628577e-01	ci left: 5.844469e-04	ci right 6.891038e-04	k: 578	n:910000
SFRS11   910000 perm   516 sec   (1762 perm/sec)   p_kst 6.351648e-04   p_cons 7.994824e-01   p_joint 6.351648e-04

Joint ci ratio: 1.616063e-01	ci left: 5.874797e-04	ci right 6.917929e-04	k: 587	n:920000
Cons ci ratio: 2.046912e-03	ci left: 7.986368e-01	ci right 8.002743e-01	k: 735500	n:920000
KS ci ratio: 1.616063e-01	ci left: 5.874797e-04	ci right 6.917929e-04	k: 587	n:920000
SFRS11   920000 perm   526 sec   (1749 perm/sec)   p_kst 6.380435e-04   p_cons 7.994565e-01   p_joint 6.380435e-04

Joint ci ratio: 1.598484e-01	ci left: 5.945792e-04	ci right 6.988943e-04	k: 600	n:930000
Cons ci ratio: 2.036031e-03	ci left: 7.986170e-01	ci right 8.002457e-01	k: 743472	n:930000
KS ci ratio: 1.598484e-01	ci left: 5.945792e-04	ci right 6.988943e-04	k: 600	n:930000
SFRS11   930000 perm   535 sec   (1737 perm/sec)   p_kst 6.451613e-04   p_cons 7.994323e-01   p_joint 6.451613e-04

Joint ci ratio: 1.590564e-01	ci left: 5.943821e-04	ci right 6.980967e-04	k: 606	n:940000
Cons ci ratio: 2.025369e-03	ci left: 7.985901e-01	ci right 8.002102e-01	k: 751437	n:940000
KS ci ratio: 1.590564e-01	ci left: 5.943821e-04	ci right 6.980967e-04	k: 606	n:940000
SFRS11   940000 perm   545 sec   (1724 perm/sec)   p_kst 6.446809e-04   p_cons 7.994011e-01   p_joint 6.446809e-04

Joint ci ratio: 1.582761e-01	ci left: 5.941905e-04	ci right 6.973147e-04	k: 612	n:950000
Cons ci ratio: 2.014734e-03	ci left: 7.985859e-01	ci right 8.001975e-01	k: 759423	n:950000
KS ci ratio: 1.582761e-01	ci left: 5.941905e-04	ci right 6.973147e-04	k: 612	n:950000
SFRS11   950000 perm   555 sec   (1712 perm/sec)   p_kst 6.442105e-04   p_cons 7.993926e-01   p_joint 6.442105e-04

Joint ci ratio: 1.576347e-01	ci left: 5.930035e-04	ci right 6.954650e-04	k: 617	n:960000
Cons ci ratio: 2.003979e-03	ci left: 7.986278e-01	ci right 8.002308e-01	k: 767453	n:960000
KS ci ratio: 1.576347e-01	ci left: 5.930035e-04	ci right 6.954650e-04	k: 617	n:960000
SFRS11   960000 perm   565 sec   (1699 perm/sec)   p_kst 6.427083e-04   p_cons 7.994302e-01   p_joint 6.427083e-04

Joint ci ratio: 1.562499e-01	ci left: 5.977850e-04	ci right 7.000804e-04	k: 628	n:970000
Cons ci ratio: 1.993656e-03	ci left: 7.986265e-01	ci right 8.002212e-01	k: 775442	n:970000
KS ci ratio: 1.562499e-01	ci left: 5.977850e-04	ci right 7.000804e-04	k: 628	n:970000
SFRS11   970000 perm   575 sec   (1686 perm/sec)   p_kst 6.474227e-04   p_cons 7.994247e-01   p_joint 6.474227e-04

Joint ci ratio: 1.550222e-01	ci left: 6.014919e-04	ci right 7.035377e-04	k: 638	n:980000
Cons ci ratio: 1.983454e-03	ci left: 7.986313e-01	ci right 8.002179e-01	k: 783437	n:980000
KS ci ratio: 1.550222e-01	ci left: 6.014919e-04	ci right 7.035377e-04	k: 638	n:980000
SFRS11   980000 perm   587 sec   (1671 perm/sec)   p_kst 6.510204e-04   p_cons 7.994255e-01   p_joint 6.510204e-04

Joint ci ratio: 1.539417e-01	ci left: 6.041558e-04	ci right 7.058733e-04	k: 647	n:990000
Cons ci ratio: 1.973120e-03	ci left: 7.986826e-01	ci right 8.002611e-01	k: 791478	n:990000
KS ci ratio: 1.539417e-01	ci left: 6.041558e-04	ci right 7.058733e-04	k: 647	n:990000
SFRS11   990000 perm   597 sec   (1658 perm/sec)   p_kst 6.535354e-04   p_cons 7.994727e-01   p_joint 6.535354e-04

Joint ci ratio: 1.535868e-01	ci left: 6.009987e-04	ci right 7.019300e-04	k: 650	n:1000000
Cons ci ratio: 1.963387e-03	ci left: 7.986608e-01	ci right 8.002314e-01	k: 799447	n:1000000
KS ci ratio: 1.535868e-01	ci left: 6.009987e-04	ci right 7.019300e-04	k: 650	n:1000000
SFRS11   1000000 perm   608 sec   (1646 perm/sec)   p_kst 6.500000e-04   p_cons 7.994470e-01   p_joint 6.500000e-04

Joint ci ratio: 1.524204e-01	ci left: 6.045703e-04	ci right 7.052598e-04	k: 660	n:1010000
Cons ci ratio: 1.953326e-03	ci left: 7.987168e-01	ci right 8.002795e-01	k: 807494	n:1010000
KS ci ratio: 1.524204e-01	ci left: 6.045703e-04	ci right 7.052598e-04	k: 660	n:1010000
SFRS11   1010000 perm   618 sec   (1635 perm/sec)   p_kst 6.534653e-04   p_cons 7.994990e-01   p_joint 6.534653e-04

Joint ci ratio: 1.516196e-01	ci left: 6.052448e-04	ci right 7.054691e-04	k: 667	n:1020000
Cons ci ratio: 1.944084e-03	ci left: 7.986618e-01	ci right 8.002169e-01	k: 815429	n:1020000
KS ci ratio: 1.516196e-01	ci left: 6.052448e-04	ci right 7.054691e-04	k: 667	n:1020000
SFRS11   1020000 perm   629 sec   (1623 perm/sec)   p_kst 6.539216e-04   p_cons 7.994402e-01   p_joint 6.539216e-04

Joint ci ratio: 1.507197e-01	ci left: 6.068419e-04	ci right 7.066804e-04	k: 675	n:1030000
Cons ci ratio: 1.934574e-03	ci left: 7.986739e-01	ci right 8.002215e-01	k: 823432	n:1030000
KS ci ratio: 1.507197e-01	ci left: 6.068419e-04	ci right 7.066804e-04	k: 675	n:1030000
SFRS11   1030000 perm   639 sec   (1612 perm/sec)   p_kst 6.553398e-04   p_cons 7.994485e-01   p_joint 6.553398e-04

Joint ci ratio: 1.499453e-01	ci left: 6.074845e-04	ci right 7.068691e-04	k: 682	n:1040000
Cons ci ratio: 1.925501e-03	ci left: 7.986358e-01	ci right 8.001760e-01	k: 831383	n:1040000
KS ci ratio: 1.499453e-01	ci left: 6.074845e-04	ci right 7.068691e-04	k: 682	n:1040000
SFRS11   1040000 perm   650 sec   (1600 perm/sec)   p_kst 6.557692e-04   p_cons 7.994067e-01   p_joint 6.557692e-04

Joint ci ratio: 1.490747e-01	ci left: 6.090330e-04	ci right 7.080409e-04	k: 690	n:1050000
Cons ci ratio: 1.916140e-03	ci left: 7.986680e-01	ci right 8.002008e-01	k: 839407	n:1050000
KS ci ratio: 1.490747e-01	ci left: 6.090330e-04	ci right 7.080409e-04	k: 690	n:1050000
SFRS11   1050000 perm   661 sec   (1589 perm/sec)   p_kst 6.571429e-04   p_cons 7.994352e-01   p_joint 6.571429e-04

Joint ci ratio: 1.486453e-01	ci left: 6.069204e-04	ci right 7.052753e-04	k: 694	n:1060000
Cons ci ratio: 1.907222e-03	ci left: 7.986477e-01	ci right 8.001733e-01	k: 847376	n:1060000
KS ci ratio: 1.486453e-01	ci left: 6.069204e-04	ci right 7.052753e-04	k: 694	n:1060000
SFRS11   1060000 perm   672 sec   (1577 perm/sec)   p_kst 6.547170e-04   p_cons 7.994113e-01   p_joint 6.547170e-04

Joint ci ratio: 1.476919e-01	ci left: 6.093477e-04	ci right 7.074067e-04	k: 703	n:1070000
Cons ci ratio: 1.898760e-03	ci left: 7.985716e-01	ci right 8.000903e-01	k: 855285	n:1070000
KS ci ratio: 1.476919e-01	ci left: 6.093477e-04	ci right 7.074067e-04	k: 703	n:1070000
SFRS11   1070000 perm   683 sec   (1567 perm/sec)   p_kst 6.570093e-04   p_cons 7.993318e-01   p_joint 6.570093e-04

Joint ci ratio: 1.472743e-01	ci left: 6.072725e-04	ci right 7.046970e-04	k: 707	n:1080000
Cons ci ratio: 1.889967e-03	ci left: 7.985721e-01	ci right 8.000837e-01	k: 863275	n:1080000
KS ci ratio: 1.472743e-01	ci left: 6.072725e-04	ci right 7.046970e-04	k: 707	n:1080000
SFRS11   1080000 perm   694 sec   (1557 perm/sec)   p_kst 6.546296e-04   p_cons 7.993287e-01   p_joint 6.546296e-04

Joint ci ratio: 1.466542e-01	ci left: 6.070034e-04	ci right 7.039388e-04	k: 713	n:1090000
Cons ci ratio: 1.881650e-03	ci left: 7.985119e-01	ci right 8.000168e-01	k: 871199	n:1090000
KS ci ratio: 1.466542e-01	ci left: 6.070034e-04	ci right 7.039388e-04	k: 713	n:1090000
SFRS11   1090000 perm   705 sec   (1547 perm/sec)   p_kst 6.541284e-04   p_cons 7.992651e-01   p_joint 6.541284e-04

Joint ci ratio: 1.459405e-01	ci left: 6.076159e-04	ci right 7.041357e-04	k: 720	n:1100000
Cons ci ratio: 1.872837e-03	ci left: 7.985567e-01	ci right 8.000545e-01	k: 879237	n:1100000
KS ci ratio: 1.459405e-01	ci left: 6.076159e-04	ci right 7.041357e-04	k: 720	n:1100000
SFRS11   1100000 perm   716 sec   (1537 perm/sec)   p_kst 6.545455e-04   p_cons 7.993064e-01   p_joint 6.545455e-04

Joint ci ratio: 1.451374e-01	ci left: 6.090867e-04	ci right 7.052616e-04	k: 728	n:1110000
Cons ci ratio: 1.864361e-03	ci left: 7.985636e-01	ci right 8.000547e-01	k: 887234	n:1110000
KS ci ratio: 1.451374e-01	ci left: 6.090867e-04	ci right 7.052616e-04	k: 728	n:1110000
SFRS11   1110000 perm   727 sec   (1526 perm/sec)   p_kst 6.558559e-04   p_cons 7.993099e-01   p_joint 6.558559e-04

Joint ci ratio: 1.445439e-01	ci left: 6.088114e-04	ci right 7.045158e-04	k: 734	n:1120000
Cons ci ratio: 1.856129e-03	ci left: 7.985481e-01	ci right 8.000325e-01	k: 895206	n:1120000
KS ci ratio: 1.445439e-01	ci left: 6.088114e-04	ci right 7.045158e-04	k: 734	n:1120000
SFRS11   1120000 perm   738 sec   (1517 perm/sec)   p_kst 6.553571e-04   p_cons 7.992911e-01   p_joint 6.553571e-04

Joint ci ratio: 1.443479e-01	ci left: 6.051296e-04	ci right 7.001151e-04	k: 736	n:1130000
Cons ci ratio: 1.848284e-03	ci left: 7.984841e-01	ci right 7.999622e-01	k: 903123	n:1130000
KS ci ratio: 1.443479e-01	ci left: 6.051296e-04	ci right 7.001151e-04	k: 736	n:1130000
SFRS11   1130000 perm   750 sec   (1507 perm/sec)   p_kst 6.513274e-04   p_cons 7.992239e-01   p_joint 6.513274e-04

Joint ci ratio: 1.436672e-01	ci left: 6.057405e-04	ci right 7.003351e-04	k: 743	n:1140000
Cons ci ratio: 1.840262e-03	ci left: 7.984696e-01	ci right 7.999412e-01	k: 911095	n:1140000
KS ci ratio: 1.436672e-01	ci left: 6.057405e-04	ci right 7.003351e-04	k: 743	n:1140000
SFRS11   1140000 perm   762 sec   (1496 perm/sec)   p_kst 6.517544e-04   p_cons 7.992061e-01   p_joint 6.517544e-04

Joint ci ratio: 1.435711e-01	ci left: 6.013114e-04	ci right 6.951462e-04	k: 744	n:1150000
Cons ci ratio: 1.832372e-03	ci left: 7.984501e-01	ci right 7.999153e-01	k: 919061	n:1150000
KS ci ratio: 1.435711e-01	ci left: 6.013114e-04	ci right 6.951462e-04	k: 744	n:1150000
SFRS11   1150000 perm   774 sec   (1487 perm/sec)   p_kst 6.469565e-04   p_cons 7.991835e-01   p_joint 6.469565e-04

Joint ci ratio: 1.431874e-01	ci left: 5.994523e-04	ci right 6.927255e-04	k: 748	n:1160000
Cons ci ratio: 1.824579e-03	ci left: 7.984318e-01	ci right 7.998908e-01	k: 927028	n:1160000
KS ci ratio: 1.431874e-01	ci left: 5.994523e-04	ci right 6.927255e-04	k: 748	n:1160000
SFRS11   1160000 perm   786 sec   (1476 perm/sec)   p_kst 6.448276e-04   p_cons 7.991621e-01   p_joint 6.448276e-04

Joint ci ratio: 1.426173e-01	ci left: 5.992736e-04	ci right 6.921162e-04	k: 754	n:1170000
Cons ci ratio: 1.816376e-03	ci left: 7.985038e-01	ci right 7.999563e-01	k: 935100	n:1170000
KS ci ratio: 1.426173e-01	ci left: 5.992736e-04	ci right 6.921162e-04	k: 754	n:1170000
SFRS11   1170000 perm   800 sec   (1463 perm/sec)   p_kst 6.444444e-04   p_cons 7.992308e-01   p_joint 6.444444e-04

Joint ci ratio: 1.420540e-01	ci left: 5.990987e-04	ci right 6.915165e-04	k: 760	n:1180000
Cons ci ratio: 1.808469e-03	ci left: 7.985414e-01	ci right 7.999877e-01	k: 943133	n:1180000
KS ci ratio: 1.420540e-01	ci left: 5.990987e-04	ci right 6.915165e-04	k: 760	n:1180000
SFRS11   1180000 perm   812 sec   (1452 perm/sec)   p_kst 6.440678e-04   p_cons 7.992653e-01   p_joint 6.440678e-04

Joint ci ratio: 1.413131e-01	ci left: 6.005486e-04	ci right 6.926662e-04	k: 768	n:1190000
Cons ci ratio: 1.801135e-03	ci left: 7.984942e-01	ci right 7.999346e-01	k: 951066	n:1190000
KS ci ratio: 1.413131e-01	ci left: 6.005486e-04	ci right 6.926662e-04	k: 768	n:1190000
SFRS11   1190000 perm   824 sec   (1444 perm/sec)   p_kst 6.453782e-04   p_cons 7.992151e-01   p_joint 6.453782e-04

Joint ci ratio: 1.407650e-01	ci left: 6.003676e-04	ci right 6.920704e-04	k: 774	n:1200000
Cons ci ratio: 1.793998e-03	ci left: 7.984287e-01	ci right 7.998632e-01	k: 958976	n:1200000
KS ci ratio: 1.407650e-01	ci left: 6.003676e-04	ci right 6.920704e-04	k: 774	n:1200000
SFRS11   1200000 perm   836 sec   (1435 perm/sec)   p_kst 6.450000e-04   p_cons 7.991467e-01   p_joint 6.450000e-04

Joint ci ratio: 1.401336e-01	ci left: 6.009878e-04	ci right 6.923390e-04	k: 781	n:1210000
Cons ci ratio: 1.786599e-03	ci left: 7.984263e-01	ci right 7.998549e-01	k: 966961	n:1210000
KS ci ratio: 1.401336e-01	ci left: 6.009878e-04	ci right 6.923390e-04	k: 781	n:1210000
SFRS11   1210000 perm   848 sec   (1427 perm/sec)   p_kst 6.454545e-04   p_cons 7.991413e-01   p_joint 6.454545e-04

Joint ci ratio: 1.395105e-01	ci left: 6.015986e-04	ci right 6.926024e-04	k: 788	n:1220000
Cons ci ratio: 1.779332e-03	ci left: 7.984166e-01	ci right 7.998393e-01	k: 974937	n:1220000
KS ci ratio: 1.395105e-01	ci left: 6.015986e-04	ci right 6.926024e-04	k: 788	n:1220000
SFRS11   1220000 perm   860 sec   (1418 perm/sec)   p_kst 6.459016e-04   p_cons 7.991287e-01   p_joint 6.459016e-04

Joint ci ratio: 1.385478e-01	ci left: 6.053397e-04	ci right 6.962253e-04	k: 799	n:1230000
Cons ci ratio: 1.772089e-03	ci left: 7.984185e-01	ci right 7.998354e-01	k: 982927	n:1230000
KS ci ratio: 1.385478e-01	ci left: 6.053397e-04	ci right 6.962253e-04	k: 799	n:1230000
SFRS11   1230000 perm   873 sec   (1410 perm/sec)   p_kst 6.495935e-04   p_cons 7.991276e-01   p_joint 6.495935e-04

Joint ci ratio: 1.381169e-01	ci left: 6.043506e-04	ci right 6.947824e-04	k: 804	n:1240000
Cons ci ratio: 1.764944e-03	ci left: 7.984187e-01	ci right 7.998299e-01	k: 990915	n:1240000
KS ci ratio: 1.381169e-01	ci left: 6.043506e-04	ci right 6.947824e-04	k: 804	n:1240000
SFRS11   1240000 perm   885 sec   (1401 perm/sec)   p_kst 6.483871e-04   p_cons 7.991250e-01   p_joint 6.483871e-04

Joint ci ratio: 1.371826e-01	ci left: 6.080128e-04	ci right 6.983269e-04	k: 815	n:1250000
Cons ci ratio: 1.757854e-03	ci left: 7.984245e-01	ci right 7.998301e-01	k: 998910	n:1250000
KS ci ratio: 1.371826e-01	ci left: 6.080128e-04	ci right 6.983269e-04	k: 815	n:1250000
SFRS11   1250000 perm   897 sec   (1393 perm/sec)   p_kst 6.520000e-04   p_cons 7.991280e-01   p_joint 6.520000e-04

Joint ci ratio: 1.366810e-01	ci left: 6.077861e-04	ci right 6.977095e-04	k: 821	n:1260000
Cons ci ratio: 1.750497e-03	ci left: 7.984947e-01	ci right 7.998944e-01	k: 1006986	n:1260000
KS ci ratio: 1.366810e-01	ci left: 6.077861e-04	ci right 6.977095e-04	k: 821	n:1260000
SFRS11   1260000 perm   910 sec   (1384 perm/sec)   p_kst 6.515873e-04   p_cons 7.991952e-01   p_joint 6.515873e-04

Joint ci ratio: 1.361027e-01	ci left: 6.083241e-04	ci right 6.979155e-04	k: 828	n:1270000
Cons ci ratio: 1.743639e-03	ci left: 7.984888e-01	ci right 7.998831e-01	k: 1014967	n:1270000
KS ci ratio: 1.361027e-01	ci left: 6.083241e-04	ci right 6.979155e-04	k: 828	n:1270000
SFRS11   1270000 perm   923 sec   (1376 perm/sec)   p_kst 6.519685e-04   p_cons 7.991866e-01   p_joint 6.519685e-04

Joint ci ratio: 1.357757e-01	ci left: 6.065903e-04	ci right 6.956943e-04	k: 832	n:1280000
Cons ci ratio: 1.736734e-03	ci left: 7.985065e-01	ci right 7.998953e-01	k: 1022978	n:1280000
KS ci ratio: 1.357757e-01	ci left: 6.065903e-04	ci right 6.956943e-04	k: 832	n:1280000
SFRS11   1280000 perm   935 sec   (1368 perm/sec)   p_kst 6.500000e-04   p_cons 7.992016e-01   p_joint 6.500000e-04

Joint ci ratio: 1.354510e-01	ci left: 6.048836e-04	ci right 6.935073e-04	k: 836	n:1290000
Cons ci ratio: 1.730231e-03	ci left: 7.984642e-01	ci right 7.998477e-01	k: 1030912	n:1290000
KS ci ratio: 1.354510e-01	ci left: 6.048836e-04	ci right 6.935073e-04	k: 836	n:1290000
SFRS11   1290000 perm   948 sec   (1361 perm/sec)   p_kst 6.480620e-04   p_cons 7.991566e-01   p_joint 6.480620e-04

Joint ci ratio: 1.348082e-01	ci left: 6.061765e-04	ci right 6.945344e-04	k: 844	n:1300000
Cons ci ratio: 1.723640e-03	ci left: 7.984526e-01	ci right 7.998307e-01	k: 1038885	n:1300000
KS ci ratio: 1.348082e-01	ci left: 6.061765e-04	ci right 6.945344e-04	k: 844	n:1300000
SFRS11   1300000 perm   961 sec   (1353 perm/sec)   p_kst 6.492308e-04   p_cons 7.991423e-01   p_joint 6.492308e-04

Joint ci ratio: 1.341745e-01	ci left: 6.074506e-04	ci right 6.955448e-04	k: 852	n:1310000
Cons ci ratio: 1.716990e-03	ci left: 7.984663e-01	ci right 7.998392e-01	k: 1046891	n:1310000
KS ci ratio: 1.341745e-01	ci left: 6.074506e-04	ci right 6.955448e-04	k: 852	n:1310000
SFRS11   1310000 perm   974 sec   (1345 perm/sec)   p_kst 6.503817e-04   p_cons 7.991534e-01   p_joint 6.503817e-04

Joint ci ratio: 1.336273e-01	ci left: 6.079741e-04	ci right 6.957560e-04	k: 859	n:1320000
Cons ci ratio: 1.710451e-03	ci left: 7.984731e-01	ci right 7.998407e-01	k: 1054888	n:1320000
KS ci ratio: 1.336273e-01	ci left: 6.079741e-04	ci right 6.957560e-04	k: 859	n:1320000
SFRS11   1320000 perm   987 sec   (1338 perm/sec)   p_kst 6.507576e-04   p_cons 7.991576e-01   p_joint 6.507576e-04

Joint ci ratio: 1.328569e-01	ci left: 6.106711e-04	ci right 6.982940e-04	k: 869	n:1330000
Cons ci ratio: 1.704211e-03	ci left: 7.984376e-01	ci right 7.998002e-01	k: 1062829	n:1330000
KS ci ratio: 1.328569e-01	ci left: 6.106711e-04	ci right 6.982940e-04	k: 869	n:1330000
SFRS11   1330000 perm   1000 sec   (1330 perm/sec)   p_kst 6.533835e-04   p_cons 7.991195e-01   p_joint 6.533835e-04

Joint ci ratio: 1.327047e-01	ci left: 6.075567e-04	ci right 6.946250e-04	k: 871	n:1340000
Cons ci ratio: 1.697821e-03	ci left: 7.984437e-01	ci right 7.998012e-01	k: 1070825	n:1340000
KS ci ratio: 1.327047e-01	ci left: 6.075567e-04	ci right 6.946250e-04	k: 871	n:1340000
SFRS11   1340000 perm   1013 sec   (1323 perm/sec)   p_kst 6.500000e-04   p_cons 7.991231e-01   p_joint 6.500000e-04

Joint ci ratio: 1.321000e-01	ci left: 6.087860e-04	ci right 6.956017e-04	k: 879	n:1350000
Cons ci ratio: 1.691389e-03	ci left: 7.984713e-01	ci right 7.998237e-01	k: 1078850	n:1350000
KS ci ratio: 1.321000e-01	ci left: 6.087860e-04	ci right 6.956017e-04	k: 879	n:1350000
SFRS11   1350000 perm   1027 sec   (1315 perm/sec)   p_kst 6.511111e-04   p_cons 7.991481e-01   p_joint 6.511111e-04

Joint ci ratio: 1.315036e-01	ci left: 6.099980e-04	ci right 6.965632e-04	k: 887	n:1360000
Cons ci ratio: 1.685211e-03	ci left: 7.984639e-01	ci right 7.998113e-01	k: 1086828	n:1360000
KS ci ratio: 1.315036e-01	ci left: 6.099980e-04	ci right 6.965632e-04	k: 887	n:1360000
SFRS11   1360000 perm   1040 sec   (1308 perm/sec)   p_kst 6.522059e-04   p_cons 7.991382e-01   p_joint 6.522059e-04

Joint ci ratio: 1.312085e-01	ci left: 6.083692e-04	ci right 6.944944e-04	k: 891	n:1370000
Cons ci ratio: 1.679025e-03	ci left: 7.984712e-01	ci right 7.998137e-01	k: 1094826	n:1370000
KS ci ratio: 1.312085e-01	ci left: 6.083692e-04	ci right 6.944944e-04	k: 891	n:1370000
SFRS11   1370000 perm   1053 sec   (1301 perm/sec)   p_kst 6.503650e-04   p_cons 7.991431e-01   p_joint 6.503650e-04

Joint ci ratio: 1.305514e-01	ci left: 6.102690e-04	ci right 6.961969e-04	k: 900	n:1380000
Cons ci ratio: 1.672826e-03	ci left: 7.984936e-01	ci right 7.998312e-01	k: 1102845	n:1380000
KS ci ratio: 1.305514e-01	ci left: 6.102690e-04	ci right 6.961969e-04	k: 900	n:1380000
SFRS11   1380000 perm   1067 sec   (1293 perm/sec)   p_kst 6.521739e-04   p_cons 7.991630e-01   p_joint 6.521739e-04

Joint ci ratio: 1.301908e-01	ci left: 6.093584e-04	ci right 6.949027e-04	k: 905	n:1390000
Cons ci ratio: 1.666927e-03	ci left: 7.984711e-01	ci right 7.998039e-01	k: 1110802	n:1390000
KS ci ratio: 1.301908e-01	ci left: 6.093584e-04	ci right 6.949027e-04	k: 905	n:1390000
SFRS11   1390000 perm   1081 sec   (1286 perm/sec)   p_kst 6.510791e-04   p_cons 7.991381e-01   p_joint 6.510791e-04

Joint ci ratio: 1.297618e-01	ci left: 6.091522e-04	ci right 6.943641e-04	k: 911	n:1400000
Cons ci ratio: 1.661031e-03	ci left: 7.984604e-01	ci right 7.997884e-01	k: 1118775	n:1400000
KS ci ratio: 1.297618e-01	ci left: 6.091522e-04	ci right 6.943641e-04	k: 911	n:1400000
SFRS11   1400000 perm   1095 sec   (1279 perm/sec)   p_kst 6.507143e-04   p_cons 7.991250e-01   p_joint 6.507143e-04

Joint ci ratio: 1.294077e-01	ci left: 6.082631e-04	ci right 6.931006e-04	k: 916	n:1410000
Cons ci ratio: 1.655270e-03	ci left: 7.984356e-01	ci right 7.997590e-01	k: 1126728	n:1410000
KS ci ratio: 1.294077e-01	ci left: 6.082631e-04	ci right 6.931006e-04	k: 916	n:1410000
SFRS11   1410000 perm   1109 sec   (1272 perm/sec)   p_kst 6.496454e-04   p_cons 7.990979e-01   p_joint 6.496454e-04

Joint ci ratio: 1.289165e-01	ci left: 6.087498e-04	ci right 6.933083e-04	k: 923	n:1420000
Cons ci ratio: 1.649515e-03	ci left: 7.984217e-01	ci right 7.997405e-01	k: 1134696	n:1420000
KS ci ratio: 1.289165e-01	ci left: 6.087498e-04	ci right 6.933083e-04	k: 923	n:1420000
SFRS11   1420000 perm   1122 sec   (1265 perm/sec)   p_kst 6.500000e-04   p_cons 7.990817e-01   p_joint 6.500000e-04

Joint ci ratio: 1.284309e-01	ci left: 6.092304e-04	ci right 6.935126e-04	k: 930	n:1430000
Cons ci ratio: 1.643772e-03	ci left: 7.984171e-01	ci right 7.997313e-01	k: 1142677	n:1430000
KS ci ratio: 1.284309e-01	ci left: 6.092304e-04	ci right 6.935126e-04	k: 930	n:1430000
SFRS11   1430000 perm   1136 sec   (1259 perm/sec)   p_kst 6.503497e-04   p_cons 7.990748e-01   p_joint 6.503497e-04

Joint ci ratio: 1.276787e-01	ci left: 6.123939e-04	ci right 6.965799e-04	k: 941	n:1440000
Cons ci ratio: 1.637785e-03	ci left: 7.984724e-01	ci right 7.997819e-01	k: 1150744	n:1440000
KS ci ratio: 1.276787e-01	ci left: 6.123939e-04	ci right 6.965799e-04	k: 941	n:1440000
SFRS11   1440000 perm   1150 sec   (1252 perm/sec)   p_kst 6.534722e-04   p_cons 7.991278e-01   p_joint 6.534722e-04

Joint ci ratio: 1.274086e-01	ci left: 6.108410e-04	ci right 6.946226e-04	k: 945	n:1450000
Cons ci ratio: 1.632479e-03	ci left: 7.984055e-01	ci right 7.997106e-01	k: 1158635	n:1450000
KS ci ratio: 1.274086e-01	ci left: 6.108410e-04	ci right 6.946226e-04	k: 945	n:1450000
SFRS11   1450000 perm   1165 sec   (1245 perm/sec)   p_kst 6.517241e-04   p_cons 7.990586e-01   p_joint 6.517241e-04

Joint ci ratio: 1.267403e-01	ci left: 6.132888e-04	ci right 6.969317e-04	k: 955	n:1460000
Cons ci ratio: 1.626756e-03	ci left: 7.984320e-01	ci right 7.997326e-01	k: 1166661	n:1460000
KS ci ratio: 1.267403e-01	ci left: 6.132888e-04	ci right 6.969317e-04	k: 955	n:1460000
SFRS11   1460000 perm   1179 sec   (1239 perm/sec)   p_kst 6.541096e-04   p_cons 7.990829e-01   p_joint 6.541096e-04

Joint ci ratio: 1.259520e-01	ci left: 6.170221e-04	ci right 7.006118e-04	k: 967	n:1470000
Cons ci ratio: 1.621120e-03	ci left: 7.984527e-01	ci right 7.997488e-01	k: 1174679	n:1470000
KS ci ratio: 1.259520e-01	ci left: 6.170221e-04	ci right 7.006118e-04	k: 967	n:1470000
SFRS11   1470000 perm   1193 sec   (1232 perm/sec)   p_kst 6.578231e-04   p_cons 7.991014e-01   p_joint 6.578231e-04

Joint ci ratio: 1.255635e-01	ci left: 6.167796e-04	ci right 7.000594e-04	k: 973	n:1480000
Cons ci ratio: 1.615685e-03	ci left: 7.984448e-01	ci right 7.997365e-01	k: 1182655	n:1480000
KS ci ratio: 1.255635e-01	ci left: 6.167796e-04	ci right 7.000594e-04	k: 973	n:1480000
SFRS11   1480000 perm   1207 sec   (1226 perm/sec)   p_kst 6.574324e-04   p_cons 7.990912e-01   p_joint 6.574324e-04

Joint ci ratio: 1.251786e-01	ci left: 6.165407e-04	ci right 6.995141e-04	k: 979	n:1490000
Cons ci ratio: 1.610344e-03	ci left: 7.984289e-01	ci right 7.997163e-01	k: 1190619	n:1490000
KS ci ratio: 1.251786e-01	ci left: 6.165407e-04	ci right 6.995141e-04	k: 979	n:1490000
SFRS11   1490000 perm   1222 sec   (1219 perm/sec)   p_kst 6.570470e-04   p_cons 7.990732e-01   p_joint 6.570470e-04

Joint ci ratio: 1.249876e-01	ci left: 6.143678e-04	ci right 6.969133e-04	k: 982	n:1500000
Cons ci ratio: 1.604887e-03	ci left: 7.984472e-01	ci right 7.997303e-01	k: 1198634	n:1500000
KS ci ratio: 1.249876e-01	ci left: 6.143678e-04	ci right 6.969133e-04	k: 982	n:1500000
SFRS11   1500000 perm   1236 sec   (1213 perm/sec)   p_kst 6.546667e-04   p_cons 7.990893e-01   p_joint 6.546667e-04

Joint ci ratio: 1.246710e-01	ci left: 6.135070e-04	ci right 6.957126e-04	k: 987	n:1510000
Cons ci ratio: 1.599379e-03	ci left: 7.984865e-01	ci right 7.997653e-01	k: 1206681	n:1510000
KS ci ratio: 1.246710e-01	ci left: 6.135070e-04	ci right 6.957126e-04	k: 987	n:1510000
SFRS11   1510000 perm   1253 sec   (1205 perm/sec)   p_kst 6.536424e-04   p_cons 7.991265e-01   p_joint 6.536424e-04

Joint ci ratio: 1.242941e-01	ci left: 6.132952e-04	ci right 6.952058e-04	k: 993	n:1520000
Cons ci ratio: 1.594397e-03	ci left: 7.984305e-01	ci right 7.997052e-01	k: 1214584	n:1520000
KS ci ratio: 1.242941e-01	ci left: 6.132952e-04	ci right 6.952058e-04	k: 993	n:1520000
SFRS11   1520000 perm   1268 sec   (1199 perm/sec)   p_kst 6.532895e-04   p_cons 7.990684e-01   p_joint 6.532895e-04

Joint ci ratio: 1.240449e-01	ci left: 6.118199e-04	ci right 6.933575e-04	k: 997	n:1530000
Cons ci ratio: 1.589077e-03	ci left: 7.984531e-01	ci right 7.997235e-01	k: 1222606	n:1530000
KS ci ratio: 1.240449e-01	ci left: 6.118199e-04	ci right 6.933575e-04	k: 997	n:1530000
SFRS11   1530000 perm   1283 sec   (1192 perm/sec)   p_kst 6.516340e-04   p_cons 7.990889e-01   p_joint 6.516340e-04

Joint ci ratio: 1.234892e-01	ci left: 6.135103e-04	ci right 6.948802e-04	k: 1006	n:1540000
Cons ci ratio: 1.583854e-03	ci left: 7.984663e-01	ci right 7.997326e-01	k: 1230614	n:1540000
KS ci ratio: 1.234892e-01	ci left: 6.135103e-04	ci right 6.948802e-04	k: 1006	n:1540000
SFRS11   1540000 perm   1298 sec   (1187 perm/sec)   p_kst 6.532468e-04   p_cons 7.991000e-01   p_joint 6.532468e-04

Joint ci ratio: 1.230622e-01	ci left: 6.139290e-04	ci right 6.950524e-04	k: 1013	n:1550000
Cons ci ratio: 1.578696e-03	ci left: 7.984767e-01	ci right 7.997389e-01	k: 1238618	n:1550000
KS ci ratio: 1.230622e-01	ci left: 6.139290e-04	ci right 6.950524e-04	k: 1013	n:1550000
SFRS11   1550000 perm   1313 sec   (1181 perm/sec)   p_kst 6.535484e-04   p_cons 7.991084e-01   p_joint 6.535484e-04

Joint ci ratio: 1.224000e-01	ci left: 6.168284e-04	ci right 6.978645e-04	k: 1024	n:1560000
Cons ci ratio: 1.573584e-03	ci left: 7.984877e-01	ci right 7.997458e-01	k: 1246623	n:1560000
KS ci ratio: 1.224000e-01	ci left: 6.168284e-04	ci right 6.978645e-04	k: 1024	n:1560000
SFRS11   1560000 perm   1328 sec   (1175 perm/sec)   p_kst 6.564103e-04   p_cons 7.991173e-01   p_joint 6.564103e-04

Joint ci ratio: 1.219250e-01	ci left: 6.178394e-04	ci right 6.986706e-04	k: 1032	n:1570000
Cons ci ratio: 1.568727e-03	ci left: 7.984564e-01	ci right 7.997106e-01	k: 1254562	n:1570000
KS ci ratio: 1.219250e-01	ci left: 6.178394e-04	ci right 6.986706e-04	k: 1032	n:1570000
SFRS11   1570000 perm   1343 sec   (1169 perm/sec)   p_kst 6.573248e-04   p_cons 7.990841e-01   p_joint 6.573248e-04

Joint ci ratio: 1.216311e-01	ci left: 6.169972e-04	ci right 6.975096e-04	k: 1037	n:1580000
Cons ci ratio: 1.564102e-03	ci left: 7.983869e-01	ci right 7.996373e-01	k: 1262440	n:1580000
KS ci ratio: 1.216311e-01	ci left: 6.169972e-04	ci right 6.975096e-04	k: 1037	n:1580000
SFRS11   1580000 perm   1359 sec   (1163 perm/sec)   p_kst 6.563291e-04   p_cons 7.990127e-01   p_joint 6.563291e-04

Joint ci ratio: 1.211650e-01	ci left: 6.179954e-04	ci right 6.983069e-04	k: 1045	n:1590000
Cons ci ratio: 1.559073e-03	ci left: 7.984102e-01	ci right 7.996566e-01	k: 1270464	n:1590000
KS ci ratio: 1.211650e-01	ci left: 6.179954e-04	ci right 6.983069e-04	k: 1045	n:1590000
SFRS11   1590000 perm   1375 sec   (1156 perm/sec)   p_kst 6.572327e-04   p_cons 7.990340e-01   p_joint 6.572327e-04

Joint ci ratio: 1.207616e-01	ci left: 6.183756e-04	ci right 6.984498e-04	k: 1052	n:1600000
Cons ci ratio: 1.554124e-03	ci left: 7.984264e-01	ci right 7.996688e-01	k: 1278477	n:1600000
KS ci ratio: 1.207616e-01	ci left: 6.183756e-04	ci right 6.984498e-04	k: 1052	n:1600000
SFRS11   1600000 perm   1390 sec   (1151 perm/sec)   p_kst 6.575000e-04   p_cons 7.990481e-01   p_joint 6.575000e-04

Joint ci ratio: 1.204759e-01	ci left: 6.175466e-04	ci right 6.973109e-04	k: 1057	n:1610000
Cons ci ratio: 1.549166e-03	ci left: 7.984541e-01	ci right 7.996926e-01	k: 1286509	n:1610000
KS ci ratio: 1.204759e-01	ci left: 6.175466e-04	ci right 6.973109e-04	k: 1057	n:1610000
SFRS11   1610000 perm   1406 sec   (1145 perm/sec)   p_kst 6.565217e-04   p_cons 7.990739e-01   p_joint 6.565217e-04

Joint ci ratio: 1.200793e-01	ci left: 6.179256e-04	ci right 6.974574e-04	k: 1064	n:1620000
Cons ci ratio: 1.544385e-03	ci left: 7.984544e-01	ci right 7.996890e-01	k: 1294497	n:1620000
KS ci ratio: 1.200793e-01	ci left: 6.179256e-04	ci right 6.974574e-04	k: 1064	n:1620000
SFRS11   1620000 perm   1421 sec   (1140 perm/sec)   p_kst 6.567901e-04   p_cons 7.990722e-01   p_joint 6.567901e-04

Joint ci ratio: 1.199107e-01	ci left: 6.159198e-04	ci right 6.950743e-04	k: 1067	n:1630000
Cons ci ratio: 1.539510e-03	ci left: 7.984834e-01	ci right 7.997143e-01	k: 1302532	n:1630000
KS ci ratio: 1.199107e-01	ci left: 6.159198e-04	ci right 6.950743e-04	k: 1067	n:1630000
SFRS11   1630000 perm   1438 sec   (1134 perm/sec)   p_kst 6.546012e-04   p_cons 7.990994e-01   p_joint 6.546012e-04

Joint ci ratio: 1.194086e-01	ci left: 6.174878e-04	ci right 6.964880e-04	k: 1076	n:1640000
Cons ci ratio: 1.534917e-03	ci left: 7.984627e-01	ci right 7.996899e-01	k: 1310486	n:1640000
KS ci ratio: 1.194086e-01	ci left: 6.174878e-04	ci right 6.964880e-04	k: 1076	n:1640000
SFRS11   1640000 perm   1454 sec   (1128 perm/sec)   p_kst 6.560976e-04   p_cons 7.990768e-01   p_joint 6.560976e-04

Joint ci ratio: 1.188579e-01	ci left: 6.196255e-04	ci right 6.985079e-04	k: 1086	n:1650000
Cons ci ratio: 1.530166e-03	ci left: 7.984842e-01	ci right 7.997075e-01	k: 1318509	n:1650000
KS ci ratio: 1.188579e-01	ci left: 6.196255e-04	ci right 6.985079e-04	k: 1086	n:1650000
SFRS11   1650000 perm   1470 sec   (1123 perm/sec)   p_kst 6.581818e-04   p_cons 7.990964e-01   p_joint 6.581818e-04

Joint ci ratio: 1.186944e-01	ci left: 6.176463e-04	ci right 6.961610e-04	k: 1089	n:1660000
Cons ci ratio: 1.525593e-03	ci left: 7.984770e-01	ci right 7.996967e-01	k: 1326485	n:1660000
KS ci ratio: 1.186944e-01	ci left: 6.176463e-04	ci right 6.961610e-04	k: 1089	n:1660000
SFRS11   1660000 perm   1486 sec   (1117 perm/sec)   p_kst 6.560241e-04   p_cons 7.990873e-01   p_joint 6.560241e-04

Joint ci ratio: 1.182611e-01	ci left: 6.185963e-04	ci right 6.969246e-04	k: 1097	n:1670000
Cons ci ratio: 1.520958e-03	ci left: 7.984915e-01	ci right 7.997075e-01	k: 1334497	n:1670000
KS ci ratio: 1.182611e-01	ci left: 6.185963e-04	ci right 6.969246e-04	k: 1097	n:1670000
SFRS11   1670000 perm   1502 sec   (1112 perm/sec)   p_kst 6.568862e-04   p_cons 7.991000e-01   p_joint 6.568862e-04

Joint ci ratio: 1.179393e-01	ci left: 6.183801e-04	ci right 6.964532e-04	k: 1103	n:1680000
Cons ci ratio: 1.516315e-03	ci left: 7.985166e-01	ci right 7.997288e-01	k: 1342527	n:1680000
KS ci ratio: 1.179393e-01	ci left: 6.183801e-04	ci right 6.964532e-04	k: 1103	n:1680000
SFRS11   1680000 perm   1518 sec   (1107 perm/sec)   p_kst 6.565476e-04   p_cons 7.991232e-01   p_joint 6.565476e-04

Joint ci ratio: 1.177263e-01	ci left: 6.170181e-04	ci right 6.947688e-04	k: 1107	n:1690000
Cons ci ratio: 1.511843e-03	ci left: 7.985141e-01	ci right 7.997228e-01	k: 1350511	n:1690000
KS ci ratio: 1.177263e-01	ci left: 6.170181e-04	ci right 6.947688e-04	k: 1107	n:1690000
SFRS11   1690000 perm   1534 sec   (1102 perm/sec)   p_kst 6.550296e-04   p_cons 7.991189e-01   p_joint 6.550296e-04

Joint ci ratio: 1.173036e-01	ci left: 6.179562e-04	ci right 6.955260e-04	k: 1115	n:1700000
Cons ci ratio: 1.507310e-03	ci left: 7.985328e-01	ci right 7.997379e-01	k: 1358531	n:1700000
KS ci ratio: 1.173036e-01	ci left: 6.179562e-04	ci right 6.955260e-04	k: 1115	n:1700000
SFRS11   1700000 perm   1550 sec   (1097 perm/sec)   p_kst 6.558824e-04   p_cons 7.991359e-01   p_joint 6.558824e-04

Joint ci ratio: 1.169895e-01	ci left: 6.177484e-04	ci right 6.950701e-04	k: 1121	n:1710000
Cons ci ratio: 1.502834e-03	ci left: 7.985478e-01	ci right 7.997494e-01	k: 1366545	n:1710000
KS ci ratio: 1.169895e-01	ci left: 6.177484e-04	ci right 6.950701e-04	k: 1121	n:1710000
SFRS11   1710000 perm   1566 sec   (1092 perm/sec)   p_kst 6.555556e-04   p_cons 7.991491e-01   p_joint 6.555556e-04

Joint ci ratio: 1.166263e-01	ci left: 6.181077e-04	ci right 6.952177e-04	k: 1128	n:1720000
Cons ci ratio: 1.498471e-03	ci left: 7.985470e-01	ci right 7.997450e-01	k: 1374532	n:1720000
KS ci ratio: 1.166263e-01	ci left: 6.181077e-04	ci right 6.952177e-04	k: 1128	n:1720000
SFRS11   1720000 perm   1582 sec   (1087 perm/sec)   p_kst 6.558140e-04   p_cons 7.991465e-01   p_joint 6.558140e-04

Joint ci ratio: 1.163176e-01	ci left: 6.179019e-04	ci right 6.947683e-04	k: 1134	n:1730000
Cons ci ratio: 1.494273e-03	ci left: 7.985189e-01	ci right 7.997136e-01	k: 1382472	n:1730000
KS ci ratio: 1.163176e-01	ci left: 6.179019e-04	ci right 6.947683e-04	k: 1134	n:1730000
SFRS11   1730000 perm   1601 sec   (1081 perm/sec)   p_kst 6.554913e-04   p_cons 7.991168e-01   p_joint 6.554913e-04

Joint ci ratio: 1.160114e-01	ci left: 6.176989e-04	ci right 6.943238e-04	k: 1140	n:1740000
Cons ci ratio: 1.489954e-03	ci left: 7.985246e-01	ci right 7.997158e-01	k: 1390470	n:1740000
KS ci ratio: 1.160114e-01	ci left: 6.176989e-04	ci right 6.943238e-04	k: 1140	n:1740000
SFRS11   1740000 perm   1618 sec   (1076 perm/sec)   p_kst 6.551724e-04   p_cons 7.991207e-01   p_joint 6.551724e-04

Joint ci ratio: 1.157076e-01	ci left: 6.174984e-04	ci right 6.938841e-04	k: 1146	n:1750000
Cons ci ratio: 1.485681e-03	ci left: 7.985285e-01	ci right 7.997163e-01	k: 1398465	n:1750000
KS ci ratio: 1.157076e-01	ci left: 6.174984e-04	ci right 6.938841e-04	k: 1146	n:1750000
SFRS11   1750000 perm   1634 sec   (1071 perm/sec)   p_kst 6.548571e-04   p_cons 7.991229e-01   p_joint 6.548571e-04

Joint ci ratio: 1.155064e-01	ci left: 6.161968e-04	ci right 6.922800e-04	k: 1150	n:1760000
Cons ci ratio: 1.481397e-03	ci left: 7.985425e-01	ci right 7.997269e-01	k: 1406478	n:1760000
KS ci ratio: 1.155064e-01	ci left: 6.161968e-04	ci right 6.922800e-04	k: 1150	n:1760000
SFRS11   1760000 perm   1650 sec   (1066 perm/sec)   p_kst 6.534091e-04   p_cons 7.991352e-01   p_joint 6.534091e-04

Joint ci ratio: 1.151568e-01	ci left: 6.165562e-04	ci right 6.924377e-04	k: 1157	n:1770000
Cons ci ratio: 1.477153e-03	ci left: 7.985559e-01	ci right 7.997369e-01	k: 1414490	n:1770000
KS ci ratio: 1.151568e-01	ci left: 6.165562e-04	ci right 6.924377e-04	k: 1157	n:1770000
SFRS11   1770000 perm   1667 sec   (1062 perm/sec)   p_kst 6.536723e-04   p_cons 7.991469e-01   p_joint 6.536723e-04

Joint ci ratio: 1.148103e-01	ci left: 6.169119e-04	ci right 6.925932e-04	k: 1164	n:1780000
Cons ci ratio: 1.472989e-03	ci left: 7.985596e-01	ci right 7.997372e-01	k: 1422485	n:1780000
KS ci ratio: 1.148103e-01	ci left: 6.169119e-04	ci right 6.925932e-04	k: 1164	n:1780000
SFRS11   1780000 perm   1684 sec   (1057 perm/sec)   p_kst 6.539326e-04   p_cons 7.991489e-01   p_joint 6.539326e-04

Joint ci ratio: 1.145158e-01	ci left: 6.167213e-04	ci right 6.921720e-04	k: 1170	n:1790000
Cons ci ratio: 1.469021e-03	ci left: 7.985279e-01	ci right 7.997024e-01	k: 1430417	n:1790000
KS ci ratio: 1.145158e-01	ci left: 6.167213e-04	ci right 6.921720e-04	k: 1170	n:1790000
SFRS11   1790000 perm   1702 sec   (1052 perm/sec)   p_kst 6.536313e-04   p_cons 7.991156e-01   p_joint 6.536313e-04

Joint ci ratio: 1.142236e-01	ci left: 6.165330e-04	ci right 6.917553e-04	k: 1176	n:1800000
Cons ci ratio: 1.465051e-03	ci left: 7.985039e-01	ci right 7.996751e-01	k: 1438362	n:1800000
KS ci ratio: 1.142236e-01	ci left: 6.165330e-04	ci right 6.917553e-04	k: 1176	n:1800000
SFRS11   1800000 perm   1718 sec   (1048 perm/sec)   p_kst 6.533333e-04   p_cons 7.990900e-01   p_joint 6.533333e-04

Joint ci ratio: 1.138854e-01	ci left: 6.168839e-04	ci right 6.919111e-04	k: 1183	n:1810000
Cons ci ratio: 1.460978e-03	ci left: 7.985100e-01	ci right 7.996780e-01	k: 1446361	n:1810000
KS ci ratio: 1.138854e-01	ci left: 6.168839e-04	ci right 6.919111e-04	k: 1183	n:1810000
SFRS11   1810000 perm   1736 sec   (1043 perm/sec)   p_kst 6.535912e-04   p_cons 7.990945e-01   p_joint 6.535912e-04

Joint ci ratio: 1.133124e-01	ci left: 6.199005e-04	ci right 6.948900e-04	k: 1195	n:1820000
Cons ci ratio: 1.456919e-03	ci left: 7.985204e-01	ci right 7.996852e-01	k: 1454368	n:1820000
KS ci ratio: 1.133124e-01	ci left: 6.199005e-04	ci right 6.948900e-04	k: 1195	n:1820000
SFRS11   1820000 perm   1753 sec   (1038 perm/sec)   p_kst 6.565934e-04   p_cons 7.991033e-01   p_joint 6.565934e-04

Joint ci ratio: 1.130764e-01	ci left: 6.191679e-04	ci right 6.939024e-04	k: 1200	n:1830000
Cons ci ratio: 1.452780e-03	ci left: 7.985559e-01	ci right 7.997174e-01	k: 1462421	n:1830000
KS ci ratio: 1.130764e-01	ci left: 6.191679e-04	ci right 6.939024e-04	k: 1200	n:1830000
SFRS11   1830000 perm   1770 sec   (1034 perm/sec)   p_kst 6.557377e-04   p_cons 7.991372e-01   p_joint 6.557377e-04

Joint ci ratio: 1.127016e-01	ci left: 6.200280e-04	ci right 6.946017e-04	k: 1208	n:1840000
Cons ci ratio: 1.448825e-03	ci left: 7.985579e-01	ci right 7.997162e-01	k: 1470413	n:1840000
KS ci ratio: 1.127016e-01	ci left: 6.200280e-04	ci right 6.946017e-04	k: 1208	n:1840000
SFRS11   1840000 perm   1788 sec   (1029 perm/sec)   p_kst 6.565217e-04   p_cons 7.991375e-01   p_joint 6.565217e-04

Joint ci ratio: 1.123305e-01	ci left: 6.208791e-04	ci right 6.952930e-04	k: 1216	n:1850000
Cons ci ratio: 1.444844e-03	ci left: 7.985728e-01	ci right 7.997279e-01	k: 1478429	n:1850000
KS ci ratio: 1.123305e-01	ci left: 6.208791e-04	ci right 6.952930e-04	k: 1216	n:1850000
SFRS11   1850000 perm   1805 sec   (1025 perm/sec)   p_kst 6.572973e-04   p_cons 7.991508e-01   p_joint 6.572973e-04

Joint ci ratio: 1.119174e-01	ci left: 6.222441e-04	ci right 6.965292e-04	k: 1225	n:1860000
Cons ci ratio: 1.440983e-03	ci left: 7.985681e-01	ci right 7.997202e-01	k: 1486409	n:1860000
KS ci ratio: 1.119174e-01	ci left: 6.222441e-04	ci right 6.965292e-04	k: 1225	n:1860000
SFRS11   1860000 perm   1822 sec   (1021 perm/sec)   p_kst 6.586022e-04   p_cons 7.991446e-01   p_joint 6.586022e-04

Joint ci ratio: 1.117808e-01	ci left: 6.204759e-04	ci right 6.944536e-04	k: 1228	n:1870000
Cons ci ratio: 1.437051e-03	ci left: 7.985860e-01	ci right 7.997350e-01	k: 1494431	n:1870000
KS ci ratio: 1.117808e-01	ci left: 6.204759e-04	ci right 6.944536e-04	k: 1228	n:1870000
SFRS11   1870000 perm   1840 sec   (1016 perm/sec)   p_kst 6.566845e-04   p_cons 7.991610e-01   p_joint 6.566845e-04

Joint ci ratio: 1.115090e-01	ci left: 6.202779e-04	ci right 6.940403e-04	k: 1234	n:1880000
Cons ci ratio: 1.433254e-03	ci left: 7.985808e-01	ci right 7.997267e-01	k: 1502410	n:1880000
KS ci ratio: 1.115090e-01	ci left: 6.202779e-04	ci right 6.940403e-04	k: 1234	n:1880000
SFRS11   1880000 perm   1858 sec   (1012 perm/sec)   p_kst 6.563830e-04   p_cons 7.991543e-01   p_joint 6.563830e-04

Joint ci ratio: 1.111495e-01	ci left: 6.211110e-04	ci right 6.947187e-04	k: 1242	n:1890000
Cons ci ratio: 1.429676e-03	ci left: 7.985333e-01	ci right 7.996763e-01	k: 1510309	n:1890000
KS ci ratio: 1.111495e-01	ci left: 6.211110e-04	ci right 6.947187e-04	k: 1242	n:1890000
SFRS11   1890000 perm   1875 sec   (1008 perm/sec)   p_kst 6.571429e-04   p_cons 7.991053e-01   p_joint 6.571429e-04

Joint ci ratio: 1.108822e-01	ci left: 6.209122e-04	ci right 6.943079e-04	k: 1248	n:1900000
Cons ci ratio: 1.425848e-03	ci left: 7.985485e-01	ci right 7.996885e-01	k: 1518326	n:1900000
KS ci ratio: 1.108822e-01	ci left: 6.209122e-04	ci right 6.943079e-04	k: 1248	n:1900000
SFRS11   1900000 perm   1893 sec   (1004 perm/sec)   p_kst 6.568421e-04   p_cons 7.991189e-01   p_joint 6.568421e-04

Joint ci ratio: 1.106169e-01	ci left: 6.207157e-04	ci right 6.939011e-04	k: 1254	n:1910000
Cons ci ratio: 1.422032e-03	ci left: 7.985677e-01	ci right 7.997046e-01	k: 1526351	n:1910000
KS ci ratio: 1.106169e-01	ci left: 6.207157e-04	ci right 6.939011e-04	k: 1254	n:1910000
SFRS11   1910000 perm   1911 sec   (999 perm/sec)   p_kst 6.565445e-04   p_cons 7.991366e-01   p_joint 6.565445e-04

Joint ci ratio: 1.104850e-01	ci left: 6.190020e-04	ci right 6.918928e-04	k: 1257	n:1920000
Cons ci ratio: 1.418180e-03	ci left: 7.986019e-01	ci right 7.997358e-01	k: 1534405	n:1920000
KS ci ratio: 1.104850e-01	ci left: 6.190020e-04	ci right 6.918928e-04	k: 1257	n:1920000
SFRS11   1920000 perm   1930 sec   (995 perm/sec)   p_kst 6.546875e-04   p_cons 7.991693e-01   p_joint 6.546875e-04

Joint ci ratio: 1.103098e-01	ci left: 6.178101e-04	ci right 6.904376e-04	k: 1261	n:1930000
Cons ci ratio: 1.414591e-03	ci left: 7.985828e-01	ci right 7.997137e-01	k: 1542357	n:1930000
KS ci ratio: 1.103098e-01	ci left: 6.178101e-04	ci right 6.904376e-04	k: 1261	n:1930000
SFRS11   1930000 perm   1948 sec   (991 perm/sec)   p_kst 6.533679e-04   p_cons 7.991487e-01   p_joint 6.533679e-04

Joint ci ratio: 1.100052e-01	ci left: 6.181343e-04	ci right 6.905863e-04	k: 1268	n:1940000
Cons ci ratio: 1.411057e-03	ci left: 7.985577e-01	ci right 7.996858e-01	k: 1550297	n:1940000
KS ci ratio: 1.100052e-01	ci left: 6.181343e-04	ci right 6.905863e-04	k: 1268	n:1940000
SFRS11   1940000 perm   1966 sec   (987 perm/sec)   p_kst 6.536082e-04   p_cons 7.991222e-01   p_joint 6.536082e-04

Joint ci ratio: 1.097030e-01	ci left: 6.184555e-04	ci right 6.907331e-04	k: 1275	n:1950000
Cons ci ratio: 1.407460e-03	ci left: 7.985534e-01	ci right 7.996786e-01	k: 1558277	n:1950000
KS ci ratio: 1.097030e-01	ci left: 6.184555e-04	ci right 6.907331e-04	k: 1275	n:1950000
SFRS11   1950000 perm   1985 sec   (982 perm/sec)   p_kst 6.538462e-04   p_cons 7.991164e-01   p_joint 6.538462e-04

Joint ci ratio: 1.094460e-01	ci left: 6.182774e-04	ci right 6.903541e-04	k: 1281	n:1960000
Cons ci ratio: 1.403798e-03	ci left: 7.985700e-01	ci right 7.996923e-01	k: 1566298	n:1960000
KS ci ratio: 1.094460e-01	ci left: 6.182774e-04	ci right 6.903541e-04	k: 1281	n:1960000
SFRS11   1960000 perm   2004 sec   (978 perm/sec)   p_kst 6.535714e-04   p_cons 7.991316e-01   p_joint 6.535714e-04

Joint ci ratio: 1.091908e-01	ci left: 6.181014e-04	ci right 6.899787e-04	k: 1287	n:1970000
Cons ci ratio: 1.400141e-03	ci left: 7.985921e-01	ci right 7.997116e-01	k: 1574330	n:1970000
KS ci ratio: 1.091908e-01	ci left: 6.181014e-04	ci right 6.899787e-04	k: 1287	n:1970000
SFRS11   1970000 perm   2022 sec   (974 perm/sec)   p_kst 6.532995e-04   p_cons 7.991523e-01   p_joint 6.532995e-04

Joint ci ratio: 1.088112e-01	ci left: 6.194012e-04	ci right 6.911632e-04	k: 1296	n:1980000
Cons ci ratio: 1.396496e-03	ci left: 7.986176e-01	ci right 7.997341e-01	k: 1582369	n:1980000
KS ci ratio: 1.088112e-01	ci left: 6.194012e-04	ci right 6.911632e-04	k: 1296	n:1980000
SFRS11   1980000 perm   2041 sec   (970 perm/sec)   p_kst 6.545455e-04   p_cons 7.991763e-01   p_joint 6.545455e-04

Joint ci ratio: 1.085188e-01	ci left: 6.197106e-04	ci right 6.913032e-04	k: 1303	n:1990000
Cons ci ratio: 1.393037e-03	ci left: 7.986065e-01	ci right 7.997203e-01	k: 1590336	n:1990000
KS ci ratio: 1.085188e-01	ci left: 6.197106e-04	ci right 6.913032e-04	k: 1303	n:1990000
SFRS11   1990000 perm   2060 sec   (966 perm/sec)   p_kst 6.547739e-04   p_cons 7.991638e-01   p_joint 6.547739e-04

Joint ci ratio: 1.080638e-01	ci left: 6.219632e-04	ci right 6.934955e-04	k: 1314	n:2000000
Cons ci ratio: 1.389409e-03	ci left: 7.986406e-01	ci right 7.997515e-01	k: 1598393	n:2000000
KS ci ratio: 1.080638e-01	ci left: 6.219632e-04	ci right 6.934955e-04	k: 1314	n:2000000
SFRS11   2000000 perm   2079 sec   (962 perm/sec)   p_kst 6.570000e-04   p_cons 7.991965e-01   p_joint 6.570000e-04

Joint ci ratio: 1.077773e-01	ci left: 6.222574e-04	ci right 6.936219e-04	k: 1321	n:2010000
Cons ci ratio: 1.386051e-03	ci left: 7.986181e-01	ci right 7.997263e-01	k: 1606337	n:2010000
KS ci ratio: 1.077773e-01	ci left: 6.222574e-04	ci right 6.936219e-04	k: 1321	n:2010000
SFRS11   2010000 perm   2097 sec   (958 perm/sec)   p_kst 6.572139e-04   p_cons 7.991726e-01   p_joint 6.572139e-04

Joint ci ratio: 1.076960e-01	ci left: 6.201403e-04	ci right 6.912049e-04	k: 1323	n:2020000
Cons ci ratio: 1.382686e-03	ci left: 7.986033e-01	ci right 7.997087e-01	k: 1614296	n:2020000
KS ci ratio: 1.076960e-01	ci left: 6.201403e-04	ci right 6.912049e-04	k: 1323	n:2020000
SFRS11   2020000 perm   2116 sec   (954 perm/sec)   p_kst 6.549505e-04   p_cons 7.991564e-01   p_joint 6.549505e-04

Joint ci ratio: 1.074528e-01	ci left: 6.199616e-04	ci right 6.908351e-04	k: 1329	n:2030000
Cons ci ratio: 1.379284e-03	ci left: 7.986029e-01	ci right 7.997056e-01	k: 1622284	n:2030000
KS ci ratio: 1.074528e-01	ci left: 6.199616e-04	ci right 6.908351e-04	k: 1329	n:2030000
SFRS11   2030000 perm   2136 sec   (950 perm/sec)   p_kst 6.546798e-04   p_cons 7.991547e-01   p_joint 6.546798e-04

Joint ci ratio: 1.072515e-01	ci left: 6.193077e-04	ci right 6.899654e-04	k: 1334	n:2040000
Cons ci ratio: 1.375952e-03	ci left: 7.985917e-01	ci right 7.996918e-01	k: 1630250	n:2040000
KS ci ratio: 1.072515e-01	ci left: 6.193077e-04	ci right 6.899654e-04	k: 1334	n:2040000
SFRS11   2040000 perm   2155 sec   (946 perm/sec)   p_kst 6.539216e-04   p_cons 7.991422e-01   p_joint 6.539216e-04

Joint ci ratio: 1.071713e-01	ci left: 6.172361e-04	ci right 6.876016e-04	k: 1336	n:2050000
Cons ci ratio: 1.372658e-03	ci left: 7.985777e-01	ci right 7.996751e-01	k: 1638210	n:2050000
KS ci ratio: 1.071713e-01	ci left: 6.172361e-04	ci right 6.876016e-04	k: 1336	n:2050000
SFRS11   2050000 perm   2175 sec   (943 perm/sec)   p_kst 6.517073e-04   p_cons 7.991268e-01   p_joint 6.517073e-04

Joint ci ratio: 1.070514e-01	ci left: 6.156571e-04	ci right 6.857590e-04	k: 1339	n:2060000
Cons ci ratio: 1.369199e-03	ci left: 7.986081e-01	ci right 7.997027e-01	k: 1646261	n:2060000
KS ci ratio: 1.070514e-01	ci left: 6.156571e-04	ci right 6.857590e-04	k: 1339	n:2060000
SFRS11   2060000 perm   2194 sec   (939 perm/sec)   p_kst 6.500000e-04   p_cons 7.991558e-01   p_joint 6.500000e-04

Joint ci ratio: 1.064177e-01	ci left: 6.202061e-04	ci right 6.903818e-04	k: 1355	n:2070000
Cons ci ratio: 1.365977e-03	ci left: 7.985883e-01	ci right 7.996804e-01	k: 1654209	n:2070000
KS ci ratio: 1.064177e-01	ci left: 6.202061e-04	ci right 6.903818e-04	k: 1355	n:2070000
SFRS11   2070000 perm   2214 sec   (935 perm/sec)   p_kst 6.545894e-04   p_cons 7.991348e-01   p_joint 6.545894e-04

Joint ci ratio: 1.061830e-01	ci left: 6.200323e-04	ci right 6.900240e-04	k: 1361	n:2080000
Cons ci ratio: 1.362755e-03	ci left: 7.985741e-01	ci right 7.996635e-01	k: 1662168	n:2080000
KS ci ratio: 1.061830e-01	ci left: 6.200323e-04	ci right 6.900240e-04	k: 1361	n:2080000
SFRS11   2080000 perm   2234 sec   (931 perm/sec)   p_kst 6.543269e-04   p_cons 7.991192e-01   p_joint 6.543269e-04

Joint ci ratio: 1.059887e-01	ci left: 6.193945e-04	ci right 6.891782e-04	k: 1366	n:2090000
Cons ci ratio: 1.359411e-03	ci left: 7.985945e-01	ci right 7.996813e-01	k: 1670199	n:2090000
KS ci ratio: 1.059887e-01	ci left: 6.193945e-04	ci right 6.891782e-04	k: 1366	n:2090000
SFRS11   2090000 perm   2253 sec   (927 perm/sec)   p_kst 6.535885e-04   p_cons 7.991383e-01   p_joint 6.535885e-04

Joint ci ratio: 1.057184e-01	ci left: 6.196901e-04	ci right 6.893180e-04	k: 1373	n:2100000
Cons ci ratio: 1.356133e-03	ci left: 7.986046e-01	ci right 7.996888e-01	k: 1678209	n:2100000
KS ci ratio: 1.057184e-01	ci left: 6.196901e-04	ci right 6.893180e-04	k: 1373	n:2100000
SFRS11   2100000 perm   2274 sec   (924 perm/sec)   p_kst 6.538095e-04   p_cons 7.991471e-01   p_joint 6.538095e-04

Joint ci ratio: 1.053357e-01	ci left: 6.213674e-04	ci right 6.909154e-04	k: 1383	n:2110000
Cons ci ratio: 1.352908e-03	ci left: 7.986076e-01	ci right 7.996892e-01	k: 1686204	n:2110000
KS ci ratio: 1.053357e-01	ci left: 6.213674e-04	ci right 6.909154e-04	k: 1383	n:2110000
SFRS11   2110000 perm   2293 sec   (920 perm/sec)   p_kst 6.554502e-04   p_cons 7.991488e-01   p_joint 6.554502e-04

Joint ci ratio: 1.050703e-01	ci left: 6.216514e-04	ci right 6.910451e-04	k: 1390	n:2120000
Cons ci ratio: 1.349768e-03	ci left: 7.985959e-01	ci right 7.996750e-01	k: 1694168	n:2120000
KS ci ratio: 1.050703e-01	ci left: 6.216514e-04	ci right 6.910451e-04	k: 1390	n:2120000
SFRS11   2120000 perm   2315 sec   (916 perm/sec)   p_kst 6.556604e-04   p_cons 7.991358e-01   p_joint 6.556604e-04

Joint ci ratio: 1.046572e-01	ci left: 6.237618e-04	ci right 6.931004e-04	k: 1401	n:2130000
Cons ci ratio: 1.346699e-03	ci left: 7.985726e-01	ci right 7.996492e-01	k: 1702107	n:2130000
KS ci ratio: 1.046572e-01	ci left: 6.237618e-04	ci right 6.931004e-04	k: 1401	n:2130000
SFRS11   2130000 perm   2337 sec   (911 perm/sec)   p_kst 6.577465e-04   p_cons 7.991113e-01   p_joint 6.577465e-04

Joint ci ratio: 1.041751e-01	ci left: 6.267632e-04	ci right 6.960949e-04	k: 1414	n:2140000
Cons ci ratio: 1.343570e-03	ci left: 7.985686e-01	ci right 7.996427e-01	k: 1710087	n:2140000
KS ci ratio: 1.041751e-01	ci left: 6.267632e-04	ci right 6.960949e-04	k: 1414	n:2140000
SFRS11   2140000 perm   2357 sec   (908 perm/sec)   p_kst 6.607477e-04   p_cons 7.991061e-01   p_joint 6.607477e-04

Joint ci ratio: 1.039184e-01	ci left: 6.270191e-04	ci right 6.961978e-04	k: 1421	n:2150000
Cons ci ratio: 1.340400e-03	ci left: 7.985801e-01	ci right 7.996517e-01	k: 1718100	n:2150000
KS ci ratio: 1.039184e-01	ci left: 6.270191e-04	ci right 6.961978e-04	k: 1421	n:2150000
SFRS11   2150000 perm   2377 sec   (905 perm/sec)   p_kst 6.609302e-04   p_cons 7.991163e-01   p_joint 6.609302e-04

Joint ci ratio: 1.035911e-01	ci left: 6.281748e-04	ci right 6.972494e-04	k: 1430	n:2160000
Cons ci ratio: 1.337220e-03	ci left: 7.985989e-01	ci right 7.996679e-01	k: 1726129	n:2160000
KS ci ratio: 1.035911e-01	ci left: 6.281748e-04	ci right 6.972494e-04	k: 1430	n:2160000
SFRS11   2160000 perm   2397 sec   (901 perm/sec)   p_kst 6.620370e-04   p_cons 7.991338e-01   p_joint 6.620370e-04

Joint ci ratio: 1.034827e-01	ci left: 6.266267e-04	ci right 6.954545e-04	k: 1433	n:2170000
Cons ci ratio: 1.334140e-03	ci left: 7.985990e-01	ci right 7.996656e-01	k: 1734118	n:2170000
KS ci ratio: 1.034827e-01	ci left: 6.266267e-04	ci right 6.954545e-04	k: 1433	n:2170000
SFRS11   2170000 perm   2418 sec   (897 perm/sec)   p_kst 6.603687e-04   p_cons 7.991327e-01   p_joint 6.603687e-04

Joint ci ratio: 1.033388e-01	ci left: 6.255396e-04	ci right 6.941467e-04	k: 1437	n:2180000
Cons ci ratio: 1.331279e-03	ci left: 7.985514e-01	ci right 7.996157e-01	k: 1742003	n:2180000
KS ci ratio: 1.033388e-01	ci left: 6.255396e-04	ci right 6.941467e-04	k: 1437	n:2180000
SFRS11   2180000 perm   2438 sec   (894 perm/sec)   p_kst 6.591743e-04   p_cons 7.990839e-01   p_joint 6.591743e-04

Joint ci ratio: 1.031239e-01	ci left: 6.253523e-04	ci right 6.937875e-04	k: 1443	n:2190000
Cons ci ratio: 1.328239e-03	ci left: 7.985518e-01	ci right 7.996136e-01	k: 1749992	n:2190000
KS ci ratio: 1.031239e-01	ci left: 6.253523e-04	ci right 6.937875e-04	k: 1443	n:2190000
SFRS11   2190000 perm   2458 sec   (891 perm/sec)   p_kst 6.589041e-04   p_cons 7.990831e-01   p_joint 6.589041e-04

Joint ci ratio: 1.029103e-01	ci left: 6.251668e-04	ci right 6.934315e-04	k: 1449	n:2200000
Cons ci ratio: 1.325260e-03	ci left: 7.985426e-01	ci right 7.996020e-01	k: 1757960	n:2200000
KS ci ratio: 1.029103e-01	ci left: 6.251668e-04	ci right 6.934315e-04	k: 1449	n:2200000
SFRS11   2200000 perm   2480 sec   (887 perm/sec)   p_kst 6.586364e-04   p_cons 7.990727e-01   p_joint 6.586364e-04

Joint ci ratio: 1.025220e-01	ci left: 6.271875e-04	ci right 6.953989e-04	k: 1460	n:2210000
Cons ci ratio: 1.322191e-03	ci left: 7.985603e-01	ci right 7.996172e-01	k: 1765987	n:2210000
KS ci ratio: 1.025220e-01	ci left: 6.271875e-04	ci right 6.953989e-04	k: 1460	n:2210000
SFRS11   2210000 perm   2500 sec   (884 perm/sec)   p_kst 6.606335e-04   p_cons 7.990891e-01   p_joint 6.606335e-04

Joint ci ratio: 1.023820e-01	ci left: 6.261179e-04	ci right 6.941145e-04	k: 1464	n:2220000
Cons ci ratio: 1.319218e-03	ci left: 7.985592e-01	ci right 7.996138e-01	k: 1773973	n:2220000
KS ci ratio: 1.023820e-01	ci left: 6.261179e-04	ci right 6.941145e-04	k: 1464	n:2220000
SFRS11   2220000 perm   2521 sec   (881 perm/sec)   p_kst 6.594595e-04   p_cons 7.990869e-01   p_joint 6.594595e-04

Joint ci ratio: 1.022426e-01	ci left: 6.250580e-04	ci right 6.928415e-04	k: 1468	n:2230000
Cons ci ratio: 1.316345e-03	ci left: 7.985389e-01	ci right 7.995912e-01	k: 1781916	n:2230000
KS ci ratio: 1.022426e-01	ci left: 6.250580e-04	ci right 6.928415e-04	k: 1468	n:2230000
SFRS11   2230000 perm   2542 sec   (877 perm/sec)   p_kst 6.582960e-04   p_cons 7.990655e-01   p_joint 6.582960e-04

Joint ci ratio: 1.017244e-01	ci left: 6.287933e-04	ci right 6.966155e-04	k: 1483	n:2240000
Cons ci ratio: 1.313315e-03	ci left: 7.985617e-01	ci right 7.996116e-01	k: 1789955	n:2240000
KS ci ratio: 1.017244e-01	ci left: 6.287933e-04	ci right 6.966155e-04	k: 1483	n:2240000
SFRS11   2240000 perm   2563 sec   (874 perm/sec)   p_kst 6.620536e-04   p_cons 7.990871e-01   p_joint 6.620536e-04

Joint ci ratio: 1.015876e-01	ci left: 6.277312e-04	ci right 6.953425e-04	k: 1487	n:2250000
Cons ci ratio: 1.310335e-03	ci left: 7.985772e-01	ci right 7.996247e-01	k: 1797978	n:2250000
KS ci ratio: 1.015876e-01	ci left: 6.277312e-04	ci right 6.953425e-04	k: 1487	n:2250000
SFRS11   2250000 perm   2585 sec   (871 perm/sec)   p_kst 6.608889e-04   p_cons 7.991013e-01   p_joint 6.608889e-04

Joint ci ratio: 1.014174e-01	ci left: 6.271099e-04	ci right 6.945343e-04	k: 1492	n:2260000
Cons ci ratio: 1.307484e-03	ci left: 7.985659e-01	ci right 7.996112e-01	k: 1805941	n:2260000
KS ci ratio: 1.014174e-01	ci left: 6.271099e-04	ci right 6.945343e-04	k: 1492	n:2260000
SFRS11   2260000 perm   2606 sec   (867 perm/sec)   p_kst 6.601770e-04   p_cons 7.990889e-01   p_joint 6.601770e-04

Joint ci ratio: 1.011805e-01	ci left: 6.273529e-04	ci right 6.946364e-04	k: 1499	n:2270000
Cons ci ratio: 1.304541e-03	ci left: 7.985817e-01	ci right 7.996246e-01	k: 1813965	n:2270000
KS ci ratio: 1.011805e-01	ci left: 6.273529e-04	ci right 6.946364e-04	k: 1499	n:2270000
SFRS11   2270000 perm   2628 sec   (864 perm/sec)   p_kst 6.603524e-04   p_cons 7.991035e-01   p_joint 6.603524e-04

Joint ci ratio: 1.010123e-01	ci left: 6.267388e-04	ci right 6.938382e-04	k: 1504	n:2280000
Cons ci ratio: 1.301658e-03	ci left: 7.985877e-01	ci right 7.996282e-01	k: 1821967	n:2280000
KS ci ratio: 1.010123e-01	ci left: 6.267388e-04	ci right 6.938382e-04	k: 1504	n:2280000
SFRS11   2280000 perm   2650 sec   (860 perm/sec)   p_kst 6.596491e-04   p_cons 7.991083e-01   p_joint 6.596491e-04

Joint ci ratio: 1.008116e-01	ci left: 6.265559e-04	ci right 6.934945e-04	k: 1510	n:2290000
Cons ci ratio: 1.298862e-03	ci left: 7.985765e-01	ci right 7.996149e-01	k: 1829930	n:2290000
KS ci ratio: 1.008116e-01	ci left: 6.265559e-04	ci right 6.934945e-04	k: 1510	n:2290000
SFRS11   2290000 perm   2672 sec   (857 perm/sec)   p_kst 6.593886e-04   p_cons 7.990961e-01   p_joint 6.593886e-04

Joint ci ratio: 1.006120e-01	ci left: 6.263748e-04	ci right 6.931537e-04	k: 1516	n:2300000
Cons ci ratio: 1.295885e-03	ci left: 7.986151e-01	ci right 7.996511e-01	k: 1838007	n:2300000
KS ci ratio: 1.006120e-01	ci left: 6.263748e-04	ci right 6.931537e-04	k: 1516	n:2300000
SFRS11   2300000 perm   2693 sec   (854 perm/sec)   p_kst 6.591304e-04   p_cons 7.991335e-01   p_joint 6.591304e-04

Joint ci ratio: 1.003807e-01	ci left: 6.266173e-04	ci right 6.932595e-04	k: 1523	n:2310000
Cons ci ratio: 1.293096e-03	ci left: 7.986113e-01	ci right 7.996451e-01	k: 1845987	n:2310000
KS ci ratio: 1.003807e-01	ci left: 6.266173e-04	ci right 6.932595e-04	k: 1523	n:2310000
SFRS11   2310000 perm   2714 sec   (851 perm/sec)   p_kst 6.593074e-04   p_cons 7.991286e-01   p_joint 6.593074e-04

Joint ci ratio: 1.001509e-01	ci left: 6.268580e-04	ci right 6.933642e-04	k: 1530	n:2320000
Cons ci ratio: 1.290264e-03	ci left: 7.986231e-01	ci right 7.996546e-01	k: 1854003	n:2320000
KS ci ratio: 1.001509e-01	ci left: 6.268580e-04	ci right 6.933642e-04	k: 1530	n:2320000
SFRS11   2320000 perm   2736 sec   (848 perm/sec)   p_kst 6.594828e-04   p_cons 7.991392e-01   p_joint 6.594828e-04

Joint ci ratio: 9.982538e-02	ci left: 6.283521e-04	ci right 6.947875e-04	k: 1540	n:2330000
Cons ci ratio: 1.287551e-03	ci left: 7.986094e-01	ci right 7.996388e-01	k: 1861960	n:2330000
KS ci ratio: 9.982538e-02	ci left: 6.283521e-04	ci right 6.947875e-04	k: 1540	n:2330000
SFRS11   2330000 perm   2759 sec   (844 perm/sec)   p_kst 6.609442e-04   p_cons 7.991245e-01   p_joint 6.609442e-04

Outputting figure to mutsig2_images.part000000000156/SFRS11.2_1503_2330000_0.00066094_0.79912_0.00066094.png
                gene_name: SFRS11
               theta_stop: 0.100 
                    nperm: 2330000 
                     p_ks: 0.00066 
        ci_ks_bounds_left: 0.00063 
       ci_ks_bounds_right: 0.00069 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.00066 
     ci_joint_bounds_left: 0.00063 
    ci_joint_bounds_right: 0.00069 

Current progress: 33 percent done.
SFRS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.518543e-02	ci left: 6.987770e-01	ci right 7.167018e-01	k: 7078	n:10000
KS ci ratio: 5.060749e-02	ci left: 3.653994e-01	ci right 3.844735e-01	k: 3749	n:10000
SFRS2   10000 perm   2 sec   (5903 perm/sec)   p_kst 3.749000e-01   p_cons 7.078000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000156/SFRS2.2_674_10000_0.3749_0.7078_1.png
                gene_name: SFRS2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
SGSH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.386620e-01	ci left: 6.884722e-02	ci right 7.920257e-02	k: 739	n:10000
Cons ci ratio: 8.446737e-02	ci left: 1.696626e-01	ci right 1.847259e-01	k: 1771	n:10000
KS ci ratio: 1.739975e-01	ci left: 4.408409e-02	ci right 5.258151e-02	k: 482	n:10000
SGSH   10000 perm   2 sec   (6304 perm/sec)   p_kst 4.820000e-02   p_cons 1.771000e-01   p_joint 7.390000e-02

Joint ci ratio: 4.346067e-02	ci left: 2.828231e-01	ci right 2.954383e-01	k: 5782	n:20000
Cons ci ratio: 6.211766e-02	ci left: 1.608671e-01	ci right 1.712301e-01	k: 3320	n:20000
KS ci ratio: 1.241901e-01	ci left: 4.449603e-02	ci right 5.043643e-02	k: 948	n:20000
SGSH   20000 perm   4 sec   (5543 perm/sec)   p_kst 4.740000e-02   p_cons 1.660000e-01   p_joint 2.891000e-01

Joint ci ratio: 3.165229e-02	ci left: 3.329121e-01	ci right 3.436526e-01	k: 10148	n:30000
Cons ci ratio: 5.080168e-02	ci left: 1.613765e-01	ci right 1.698217e-01	k: 4967	n:30000
KS ci ratio: 1.009003e-01	ci left: 4.547813e-02	ci right 5.034324e-02	k: 1436	n:30000
SGSH   30000 perm   6 sec   (5214 perm/sec)   p_kst 4.786667e-02   p_cons 1.655667e-01   p_joint 3.382667e-01

Joint ci ratio: 2.739945e-02	ci left: 3.338372e-01	ci right 3.431363e-01	k: 13539	n:40000
Cons ci ratio: 4.399565e-02	ci left: 1.619443e-01	ci right 1.692543e-01	k: 6623	n:40000
KS ci ratio: 8.667222e-02	ci left: 4.653756e-02	ci right 5.077827e-02	k: 1945	n:40000
SGSH   40000 perm   8 sec   (4946 perm/sec)   p_kst 4.862500e-02   p_cons 1.655750e-01   p_joint 3.384750e-01

Outputting figure to mutsig2_images.part000000000156/SGSH.2_1541_40000_0.048625_0.16557_0.33848.png
                gene_name: SGSH
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.049 
        ci_ks_bounds_left: 0.047 
       ci_ks_bounds_right: 0.051 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000156
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 156 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1431>
Subject: Job 9878161: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1431>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000157> was used as the working directory.
Started at Fri Oct  5 22:56:03 2012
Results reported at Fri Oct  5 22:59:50 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000157.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000157.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 157  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000157.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    196.00 sec.
    Max Memory :      2091 MB
    Max Swap   :      4620 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
157
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 157
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 157: processing genes 14146 - 14235
Calculating significance of each gene.
Using projection method.
14146	SH3GL1	1
14147	SH3GL2	1
14148	SH3GL3	1
14149	SH3GLB1	1
14150	SH3GLB2	1.839726e-02
14151	SH3KBP1	1
14152	SH3PXD2A	1
14153	SH3PXD2B	1
14154	SH3RF1	1
14155	SH3RF2	1
14156	SH3RF3	1
14157	SH3TC1	1
14158	SH3TC2	2.131352e-01
14159	SH3YL1	1
14160	SHANK1	1
14161	SHANK2	1.828568e-01
14162	SHANK3	1
14163	SHARPIN	1
14164	SHB	1
14165	SHBG	1
14166	SHC1	1
14167	SHC2	1
14168	SHC3	1
14169	SHC4	1
14170	SHCBP1	2.097851e-01
14171	SHD	1
14172	SHE	1
14173	SHF	1
In gene SHFM1 the following bins exceed PROBCAP:
    PRAD-CH-5788	categ 6	N = 225     n = 1	mu =   2.66e-07
14174	SHFM1	7.432052e-03
14175	SHH	1
14176	SHISA2	1
14177	SHISA3	1
14178	SHISA4	1
14179	SHISA5	1
14180	SHKBP1	1
14181	SHMT1	1
14182	SHMT2	1
14183	SHOC2	1
14184	SHOX	7.735783e-02
14185	SHOX2	1
14186	SHPK	1
14187	SHPRH	1.056106e-01
14188	SHQ1	1
14189	SHROOM1	1
14190	SHROOM2	1
14191	SHROOM3	1
14192	SHROOM4	1.270033e-01
14193	SI	1
14194	SIAE	1
14195	SIAH1	1
14196	SIAH2	1
14197	SIAH3	1
14198	SIDT1	1
14199	SIDT2	2.625479e-01
14200	SIGIRR	1
14201	SIGLEC1	1.253148e-01
14202	SIGLEC10	1
14203	SIGLEC11	9.786890e-02
14204	SIGLEC12	1
14205	SIGLEC14	1
14206	SIGLEC15	1
14207	SIGLEC5	1.006655e-01
14208	SIGLEC6	1
14209	SIGLEC7	1
14210	SIGLEC8	1
14211	SIGLEC9	1.253604e-01
14212	SIGMAR1	1
14213	SIK1	1
14214	SIK2	1
14215	SIK3	3.005349e-01
14216	SIKE1	1
14217	SIL1	1
14218	SILV	6.901256e-02
14219	SIM1	2.108556e-01
14220	SIM2	1
14221	SIN3A	1
14222	SIN3B	1
14223	SIP1	6.428333e-02
14224	SIPA1	1
14225	SIPA1L1	5.477055e-02
14226	SIPA1L2	1
14227	SIPA1L3	1.465630e-02
14228	SIRPA	1
14229	SIRPB1	1
14230	SIRPB2	1
14231	SIRPD	1
14232	SIRPG	1
14233	SIRT1	1
14234	SIRT2	1
14235	SIRT3	1
Done

Running MutSig 2:
Scatter job 157: processing genes 14146 - 14235
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SIPA1L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.886136e-02	ci left: 3.819165e-01	ci right 4.011468e-01	k: 3915	n:10000
Cons ci ratio: 1.805555e-02	ci left: 8.174085e-01	ci right 8.324018e-01	k: 8250	n:10000
KS ci ratio: 7.492393e-02	ci left: 2.067847e-01	ci right 2.229817e-01	k: 2148	n:10000
SIPA1L3   10000 perm   3 sec   (3712 perm/sec)   p_kst 2.148000e-01   p_cons 8.250000e-01   p_joint 3.915000e-01

Outputting figure to mutsig2_images.part000000000157/SIPA1L3.3_5426_10000_0.2148_0.825_0.3915.png
                gene_name: SIPA1L3
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 20 percent done.
SHPRH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.215091e-02	ci left: 2.196098e-01	ci right 2.361490e-01	k: 2278	n:10000
Cons ci ratio: 1.077377e-01	ci left: 1.105672e-01	ci right 1.232569e-01	k: 1168	n:10000
KS ci ratio: 9.244324e-02	ci left: 1.453096e-01	ci right 1.594935e-01	k: 1523	n:10000
SHPRH   10000 perm   2 sec   (4482 perm/sec)   p_kst 1.523000e-01   p_cons 1.168000e-01   p_joint 2.278000e-01

Joint ci ratio: 3.208701e-02	ci left: 4.204301e-01	ci right 4.341910e-01	k: 8546	n:20000
Cons ci ratio: 7.170532e-02	ci left: 1.253190e-01	ci right 1.346889e-01	k: 2599	n:20000
KS ci ratio: 6.536829e-02	ci left: 1.473954e-01	ci right 1.574059e-01	k: 3047	n:20000
SHPRH   20000 perm   5 sec   (4035 perm/sec)   p_kst 1.523500e-01   p_cons 1.299500e-01   p_joint 4.273000e-01

Outputting figure to mutsig2_images.part000000000157/SHPRH.2_5212_20000_0.15235_0.12995_0.4273.png
                gene_name: SHPRH
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.43 

Current progress: 40 percent done.
SIGLEC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.211988e-02	ci left: 3.517769e-01	ci right 3.707040e-01	k: 3612	n:10000
Cons ci ratio: 7.512432e-02	ci left: 2.058972e-01	ci right 2.220697e-01	k: 2139	n:10000
KS ci ratio: 2.846609e-02	ci left: 6.452870e-01	ci right 6.640228e-01	k: 6547	n:10000
SIGLEC1   10000 perm   2 sec   (4449 perm/sec)   p_kst 6.547000e-01   p_cons 2.139000e-01   p_joint 3.612000e-01

Outputting figure to mutsig2_images.part000000000157/SIGLEC1.2_5214_10000_0.6547_0.2139_0.3612.png
                gene_name: SIGLEC1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 60 percent done.
SIK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.629469e-02	ci left: 8.456012e-01	ci right 8.595928e-01	k: 8527	n:10000
Cons ci ratio: 1.008422e-02	ci left: 9.330945e-01	ci right 9.426485e-01	k: 9380	n:10000
KS ci ratio: 2.230595e-02	ci left: 7.468514e-01	ci right 7.637996e-01	k: 7554	n:10000
SIK3   10000 perm   2 sec   (5062 perm/sec)   p_kst 7.554000e-01   p_cons 9.380000e-01   p_joint 8.527000e-01

Outputting figure to mutsig2_images.part000000000157/SIK3.2_3884_10000_0.7554_0.938_0.8527.png
                gene_name: SIK3
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 80 percent done.
SIPA1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.658696e-02	ci left: 6.756920e-01	ci right 6.940002e-01	k: 6849	n:10000
KS ci ratio: 1.902955e-02	ci left: 8.014606e-01	ci right 8.169589e-01	k: 8093	n:10000
SIPA1L1   10000 perm   2 sec   (4082 perm/sec)   p_kst 8.093000e-01   p_cons 6.849000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000157/SIPA1L1.2_5499_10000_0.8093_0.6849_1.png
                gene_name: SIPA1L1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000157
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 157 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1430>
Subject: Job 9878164: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1430>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000158> was used as the working directory.
Started at Fri Oct  5 22:56:03 2012
Results reported at Sat Oct  6 02:00:18 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000158.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000158.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 158  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000158.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  11746.90 sec.
    Max Memory :      2198 MB
    Max Swap   :      4740 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
158
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 158
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 158: processing genes 14236 - 14326
Calculating significance of each gene.
Using projection method.
14236	SIRT4	1
14237	SIRT5	1
14238	SIRT6	1
14239	SIRT7	1
14240	SIT1	1
14241	SIVA1	1
14242	SIX1	7.988945e-02
14243	SIX2	1
14244	SIX3	1
14245	SIX4	1
14246	SIX5	1
14247	SIX6	1
14248	SKA1	2.895985e-02
14249	SKA2	1
14250	SKA3	1
14251	SKAP1	3.476571e-02
14252	SKAP2	1
14253	SKI	1
14254	SKIL	1
14255	SKIV2L	2.963872e-01
14256	SKIV2L2	5.586153e-03
14257	SKP1	1
14258	SKP2	1
14259	SLA	1
14260	SLA2	1
14261	SLAIN1	1
In gene SLAIN2 the following bins exceed PROBCAP:
    PRAD-CH-5772	categ 6	N = 1385    n = 1	mu =   3.94e-07
14262	SLAIN2	7.346664e-02
14263	SLAMF1	1
14264	SLAMF6	1
14265	SLAMF7	1
14266	SLAMF8	1
14267	SLAMF9	1
14268	SLBP	1
14269	SLC10A1	1
14270	SLC10A2	7.898537e-03
14271	SLC10A3	1
14272	SLC10A4	1
14273	SLC10A5	1
14274	SLC10A6	1
14275	SLC10A7	1
14276	SLC11A1	1
14277	SLC11A2	1
14278	SLC12A1	2.448732e-01
14279	SLC12A2	1
14280	SLC12A3	1
14281	SLC12A4	1
14282	SLC12A5	1
14283	SLC12A6	1
14284	SLC12A7	1
14285	SLC12A8	1
14286	SLC12A9	1
14287	SLC13A1	1
14288	SLC13A2	1
14289	SLC13A3	1
14290	SLC13A4	1
14291	SLC13A5	4.989941e-02
14292	SLC14A1	1
14293	SLC14A2	7.253162e-02
14294	SLC15A1	1
14295	SLC15A2	1
14296	SLC15A3	7.922648e-03
14297	SLC15A4	1
14298	SLC16A1	1
14299	SLC16A10	1
14300	SLC16A11	1
14301	SLC16A12	1
14302	SLC16A13	1
14303	SLC16A14	1
14304	SLC16A2	1
14305	SLC16A3	1
14306	SLC16A4	1.020280e-01
14307	SLC16A5	1
14308	SLC16A6	1
14309	SLC16A7	1
14310	SLC16A8	1
14311	SLC16A9	1
14312	SLC17A1	1
14313	SLC17A2	1
14314	SLC17A3	1
14315	SLC17A4	1
14316	SLC17A5	1
14317	SLC17A6	1
14318	SLC17A7	1
14319	SLC17A8	1
14320	SLC17A9	1
14321	SLC18A1	1.182642e-01
14322	SLC18A2	1
14323	SLC18A3	1
14324	SLC19A1	1
14325	SLC19A2	1
14326	SLC19A3	1
Done

Running MutSig 2:
Scatter job 158: processing genes 14236 - 14326
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SKIV2L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.110596e-02	ci left: 4.663694e-01	ci right 4.860444e-01	k: 4762	n:10000
Cons ci ratio: 1.520250e-02	ci left: 8.625359e-01	ci right 8.758482e-01	k: 8693	n:10000
KS ci ratio: 5.701213e-02	ci left: 3.117537e-01	ci right 3.301507e-01	k: 3209	n:10000
SKIV2L2   10000 perm   2 sec   (4644 perm/sec)   p_kst 3.209000e-01   p_cons 8.693000e-01   p_joint 4.762000e-01

Outputting figure to mutsig2_images.part000000000158/SKIV2L2.3_3237_10000_0.3209_0.8693_0.4762.png
                gene_name: SKIV2L2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 33 percent done.
SLC10A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.106476e-02	ci left: 6.045771e-01	ci right 6.237564e-01	k: 6142	n:10000
Cons ci ratio: 4.372585e-02	ci left: 4.357256e-01	ci right 4.553061e-01	k: 4455	n:10000
KS ci ratio: 1.769821e-02	ci left: 8.232038e-01	ci right 8.380031e-01	k: 8307	n:10000
SLC10A2   10000 perm   2 sec   (5770 perm/sec)   p_kst 8.307000e-01   p_cons 4.455000e-01   p_joint 6.142000e-01

Outputting figure to mutsig2_images.part000000000158/SLC10A2.2_1071_10000_0.8307_0.4455_0.6142.png
                gene_name: SLC10A2
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 67 percent done.
SLC15A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.181215e+00	ci left: 4.796397e-04	ci right 1.838264e-03	k: 10	n:10000
Cons ci ratio: 1.460418e-01	ci left: 6.227288e-02	ci right 7.218104e-02	k: 671	n:10000
KS ci ratio: 1.238931e+00	ci left: 4.116173e-04	ci right 1.707790e-03	k: 9	n:10000
SLC15A3   10000 perm   2 sec   (5628 perm/sec)   p_kst 9.000000e-04   p_cons 6.710000e-02   p_joint 1.000000e-03

Joint ci ratio: 1.086832e+00	ci left: 3.100660e-04	ci right 1.047844e-03	k: 12	n:20000
Cons ci ratio: 1.045681e-01	ci left: 6.220709e-02	ci right 6.911984e-02	k: 1312	n:20000
KS ci ratio: 1.011735e+00	ci left: 3.827477e-04	ci right 1.174202e-03	k: 14	n:20000
SLC15A3   20000 perm   4 sec   (4989 perm/sec)   p_kst 7.000000e-04   p_cons 6.560000e-02   p_joint 6.000000e-04

Joint ci ratio: 1.011870e+00	ci left: 2.551537e-04	ci right 7.828635e-04	k: 14	n:30000
Cons ci ratio: 8.597733e-02	ci left: 6.200726e-02	ci right 6.761072e-02	k: 1943	n:30000
KS ci ratio: 7.836602e-01	ci left: 5.126402e-04	ci right 1.190104e-03	k: 24	n:30000
SLC15A3   30000 perm   6 sec   (4709 perm/sec)   p_kst 8.000000e-04   p_cons 6.476667e-02   p_joint 4.666667e-04

Joint ci ratio: 1.047468e+00	ci left: 1.730598e-04	ci right 5.556958e-04	k: 13	n:40000
Cons ci ratio: 7.410786e-02	ci left: 6.294717e-02	ci right 6.781616e-02	k: 2614	n:40000
KS ci ratio: 7.154134e-01	ci left: 4.855960e-04	ci right 1.041056e-03	k: 29	n:40000
SLC15A3   40000 perm   9 sec   (4584 perm/sec)   p_kst 7.250000e-04   p_cons 6.535000e-02   p_joint 3.250000e-04

Joint ci ratio: 1.239476e+00	ci left: 8.231066e-05	ci right 3.416684e-04	k: 9	n:50000
Cons ci ratio: 6.595827e-02	ci left: 6.379961e-02	ci right 6.817095e-02	k: 3298	n:50000
KS ci ratio: 6.821524e-01	ci left: 4.377994e-04	ci right 9.033700e-04	k: 32	n:50000
SLC15A3   50000 perm   11 sec   (4513 perm/sec)   p_kst 6.400000e-04   p_cons 6.596000e-02   p_joint 1.800000e-04

Joint ci ratio: 1.047533e+00	ci left: 1.153708e-04	ci right 3.704781e-04	k: 13	n:60000
Cons ci ratio: 6.007997e-02	ci left: 6.425612e-02	ci right 6.825263e-02	k: 3974	n:60000
KS ci ratio: 6.119868e-01	ci left: 4.763178e-04	ci right 9.077013e-04	k: 40	n:60000
SLC15A3   60000 perm   13 sec   (4462 perm/sec)   p_kst 6.666667e-04   p_cons 6.623333e-02   p_joint 2.166667e-04

Joint ci ratio: 9.506174e-01	ci left: 1.306538e-04	ci right 3.711592e-04	k: 16	n:70000
Cons ci ratio: 5.531417e-02	ci left: 6.508817e-02	ci right 6.880497e-02	k: 4685	n:70000
KS ci ratio: 5.434004e-01	ci left: 5.425159e-04	ci right 9.578270e-04	k: 51	n:70000
SLC15A3   70000 perm   16 sec   (4399 perm/sec)   p_kst 7.285714e-04   p_cons 6.692857e-02   p_joint 2.285714e-04

Joint ci ratio: 6.275454e-01	ci left: 3.361595e-04	ci right 6.519169e-04	k: 38	n:80000
Cons ci ratio: 5.157895e-02	ci left: 6.559804e-02	ci right 6.908342e-02	k: 5386	n:80000
KS ci ratio: 4.976444e-01	ci left: 5.833007e-04	ci right 9.793569e-04	k: 61	n:80000
SLC15A3   80000 perm   18 sec   (4336 perm/sec)   p_kst 7.625000e-04   p_cons 6.732500e-02   p_joint 4.750000e-04

Joint ci ratio: 6.047246e-01	ci left: 3.269337e-04	ci right 6.179623e-04	k: 41	n:90000
Cons ci ratio: 4.876028e-02	ci left: 6.536399e-02	ci right 6.864177e-02	k: 6029	n:90000
KS ci ratio: 4.823390e-01	ci left: 5.574387e-04	ci right 9.204402e-04	k: 65	n:90000
SLC15A3   90000 perm   21 sec   (4270 perm/sec)   p_kst 7.222222e-04   p_cons 6.698889e-02   p_joint 4.555556e-04

Joint ci ratio: 5.656646e-01	ci left: 3.453581e-04	ci right 6.249519e-04	k: 47	n:100000
Cons ci ratio: 4.625068e-02	ci left: 6.546784e-02	ci right 6.857733e-02	k: 6701	n:100000
KS ci ratio: 4.650509e-01	ci left: 5.457237e-04	ci right 8.843263e-04	k: 70	n:100000
SLC15A3   100000 perm   24 sec   (4199 perm/sec)   p_kst 7.000000e-04   p_cons 6.701000e-02   p_joint 4.700000e-04

Joint ci ratio: 6.047509e-01	ci left: 2.674884e-04	ci right 5.056130e-04	k: 41	n:110000
Cons ci ratio: 4.424387e-02	ci left: 6.513349e-02	ci right 6.808941e-02	k: 7326	n:110000
KS ci ratio: 4.353932e-01	ci left: 5.767229e-04	ci right 9.050733e-04	k: 80	n:110000
SLC15A3   110000 perm   27 sec   (4133 perm/sec)   p_kst 7.272727e-04   p_cons 6.660000e-02   p_joint 3.727273e-04

Joint ci ratio: 5.598833e-01	ci left: 2.949427e-04	ci right 5.303074e-04	k: 48	n:120000
Cons ci ratio: 4.230670e-02	ci left: 6.535241e-02	ci right 6.818523e-02	k: 8011	n:120000
KS ci ratio: 4.225512e-01	ci left: 5.658295e-04	ci right 8.757918e-04	k: 85	n:120000
SLC15A3   120000 perm   30 sec   (4066 perm/sec)   p_kst 7.083333e-04   p_cons 6.675833e-02   p_joint 4.000000e-04

Joint ci ratio: 4.937520e-01	ci left: 3.656731e-04	ci right 6.113528e-04	k: 62	n:130000
Cons ci ratio: 4.065869e-02	ci left: 6.537241e-02	ci right 6.809311e-02	k: 8674	n:130000
KS ci ratio: 4.177303e-01	ci left: 5.360601e-04	ci right 8.254292e-04	k: 87	n:130000
SLC15A3   130000 perm   32 sec   (4004 perm/sec)   p_kst 6.692308e-04   p_cons 6.672308e-02   p_joint 4.769231e-04

Joint ci ratio: 4.787879e-01	ci left: 3.646210e-04	ci right 5.997342e-04	k: 66	n:140000
Cons ci ratio: 3.922540e-02	ci left: 6.527815e-02	ci right 6.789698e-02	k: 9321	n:140000
KS ci ratio: 3.978764e-01	ci left: 5.554650e-04	ci right 8.373110e-04	k: 96	n:140000
SLC15A3   140000 perm   36 sec   (3939 perm/sec)   p_kst 6.857143e-04   p_cons 6.657857e-02   p_joint 4.714286e-04

Joint ci ratio: 4.586881e-01	ci left: 3.755888e-04	ci right 6.044429e-04	k: 72	n:150000
Cons ci ratio: 3.793373e-02	ci left: 6.519793e-02	ci right 6.772553e-02	k: 9968	n:150000
KS ci ratio: 3.770651e-01	ci left: 5.846296e-04	ci right 8.619262e-04	k: 107	n:150000
SLC15A3   150000 perm   39 sec   (3873 perm/sec)   p_kst 7.133333e-04   p_cons 6.645333e-02   p_joint 4.800000e-04

Joint ci ratio: 4.381584e-01	ci left: 3.909254e-04	ci right 6.153224e-04	k: 79	n:160000
Cons ci ratio: 3.673769e-02	ci left: 6.520955e-02	ci right 6.765619e-02	k: 10628	n:160000
KS ci ratio: 3.638298e-01	ci left: 5.934372e-04	ci right 8.626884e-04	k: 115	n:160000
SLC15A3   160000 perm   42 sec   (3809 perm/sec)   p_kst 7.187500e-04   p_cons 6.642500e-02   p_joint 4.937500e-04

Joint ci ratio: 4.618772e-01	ci left: 3.261998e-04	ci right 5.267762e-04	k: 71	n:170000
Cons ci ratio: 3.568196e-02	ci left: 6.510424e-02	ci right 6.747529e-02	k: 11268	n:170000
KS ci ratio: 3.607389e-01	ci left: 5.692216e-04	ci right 8.247756e-04	k: 117	n:170000
SLC15A3   170000 perm   45 sec   (3750 perm/sec)   p_kst 6.882353e-04   p_cons 6.628235e-02   p_joint 4.176471e-04

Joint ci ratio: 4.618827e-01	ci left: 3.080768e-04	ci right 4.975123e-04	k: 71	n:180000
Cons ci ratio: 3.473260e-02	ci left: 6.493989e-02	ci right 6.724077e-02	k: 11895	n:180000
KS ci ratio: 3.477201e-01	ci left: 5.831512e-04	ci right 8.333836e-04	k: 126	n:180000
SLC15A3   180000 perm   49 sec   (3695 perm/sec)   p_kst 7.000000e-04   p_cons 6.608333e-02   p_joint 3.944444e-04

Joint ci ratio: 5.059886e-01	ci left: 2.363952e-04	ci right 4.005383e-04	k: 59	n:190000
Cons ci ratio: 3.378016e-02	ci left: 6.506514e-02	ci right 6.730601e-02	k: 12574	n:190000
KS ci ratio: 3.372591e-01	ci left: 5.909441e-04	ci right 8.352330e-04	k: 134	n:190000
SLC15A3   190000 perm   52 sec   (3637 perm/sec)   p_kst 7.052632e-04   p_cons 6.617895e-02   p_joint 3.105263e-04

Joint ci ratio: 4.977621e-01	ci left: 2.333086e-04	ci right 3.917683e-04	k: 61	n:200000
Cons ci ratio: 3.295663e-02	ci left: 6.497521e-02	ci right 6.715739e-02	k: 13212	n:200000
KS ci ratio: 3.243023e-01	ci left: 6.118324e-04	ci right 8.530194e-04	k: 145	n:200000
SLC15A3   200000 perm   56 sec   (3582 perm/sec)   p_kst 7.250000e-04   p_cons 6.606000e-02   p_joint 3.050000e-04

Joint ci ratio: 4.718339e-01	ci left: 2.514593e-04	ci right 4.104879e-04	k: 68	n:210000
Cons ci ratio: 3.216070e-02	ci left: 6.500788e-02	ci right 6.713745e-02	k: 13874	n:210000
KS ci ratio: 3.137338e-01	ci left: 6.265056e-04	ci right 8.638167e-04	k: 155	n:210000
SLC15A3   210000 perm   60 sec   (3528 perm/sec)   p_kst 7.380952e-04   p_cons 6.606667e-02   p_joint 3.238095e-04

Joint ci ratio: 4.587241e-01	ci left: 2.560793e-04	ci right 4.121283e-04	k: 72	n:220000
Cons ci ratio: 3.140129e-02	ci left: 6.511035e-02	ci right 6.719200e-02	k: 14552	n:220000
KS ci ratio: 3.078702e-01	ci left: 6.231739e-04	ci right 8.539456e-04	k: 161	n:220000
SLC15A3   220000 perm   63 sec   (3473 perm/sec)   p_kst 7.318182e-04   p_cons 6.614545e-02   p_joint 3.272727e-04

Joint ci ratio: 4.556164e-01	ci left: 2.487921e-04	ci right 3.990556e-04	k: 73	n:230000
Cons ci ratio: 3.070189e-02	ci left: 6.516992e-02	ci right 6.720625e-02	k: 15222	n:230000
KS ci ratio: 3.005385e-01	ci left: 6.282079e-04	ci right 8.542463e-04	k: 169	n:230000
SLC15A3   230000 perm   67 sec   (3421 perm/sec)   p_kst 7.347826e-04   p_cons 6.618261e-02   p_joint 3.173913e-04

Joint ci ratio: 3.880545e-01	ci left: 3.427883e-04	ci right 5.113275e-04	k: 101	n:240000
Cons ci ratio: 3.005938e-02	ci left: 6.517534e-02	ci right 6.716848e-02	k: 15880	n:240000
KS ci ratio: 2.904589e-01	ci left: 6.483285e-04	ci right 8.723459e-04	k: 181	n:240000
SLC15A3   240000 perm   71 sec   (3371 perm/sec)   p_kst 7.541667e-04   p_cons 6.616667e-02   p_joint 4.208333e-04

Joint ci ratio: 4.201941e-01	ci left: 2.751645e-04	ci right 4.248200e-04	k: 86	n:250000
Cons ci ratio: 2.947564e-02	ci left: 6.509732e-02	ci right 6.704875e-02	k: 16517	n:250000
KS ci ratio: 2.850297e-01	ci left: 6.483749e-04	ci right 8.674673e-04	k: 188	n:250000
SLC15A3   250000 perm   75 sec   (3324 perm/sec)   p_kst 7.520000e-04   p_cons 6.606800e-02   p_joint 3.440000e-04

Joint ci ratio: 4.201970e-01	ci left: 2.645809e-04	ci right 4.084814e-04	k: 86	n:260000
Cons ci ratio: 2.891471e-02	ci left: 6.506767e-02	ci right 6.698048e-02	k: 17165	n:260000
KS ci ratio: 2.784756e-01	ci left: 6.556078e-04	ci right 8.711572e-04	k: 197	n:260000
SLC15A3   260000 perm   79 sec   (3276 perm/sec)   p_kst 7.576923e-04   p_cons 6.601923e-02   p_joint 3.307692e-04

Joint ci ratio: 4.131346e-01	ci left: 2.647278e-04	ci right 4.056222e-04	k: 89	n:270000
Cons ci ratio: 2.838122e-02	ci left: 6.505526e-02	ci right 6.693184e-02	k: 17817	n:270000
KS ci ratio: 2.730146e-01	ci left: 6.589074e-04	ci right 8.705650e-04	k: 205	n:270000
SLC15A3   270000 perm   84 sec   (3230 perm/sec)   p_kst 7.592593e-04   p_cons 6.598889e-02   p_joint 3.296296e-04

Joint ci ratio: 4.000140e-01	ci left: 2.745108e-04	ci right 4.147435e-04	k: 95	n:280000
Cons ci ratio: 2.786813e-02	ci left: 6.507953e-02	ci right 6.692232e-02	k: 18479	n:280000
KS ci ratio: 2.672386e-01	ci left: 6.653417e-04	ci right 8.737872e-04	k: 214	n:280000
SLC15A3   280000 perm   88 sec   (3186 perm/sec)   p_kst 7.642857e-04   p_cons 6.599643e-02   p_joint 3.392857e-04

Joint ci ratio: 4.000164e-01	ci left: 2.650446e-04	ci right 4.004426e-04	k: 95	n:290000
Cons ci ratio: 2.739800e-02	ci left: 6.503045e-02	ci right 6.684030e-02	k: 19120	n:290000
KS ci ratio: 2.653956e-01	ci left: 6.520524e-04	ci right 8.546915e-04	k: 217	n:290000
SLC15A3   290000 perm   92 sec   (3139 perm/sec)   p_kst 7.482759e-04   p_cons 6.593103e-02   p_joint 3.275862e-04

Joint ci ratio: 4.788499e-01	ci left: 1.701519e-04	ci right 2.798856e-04	k: 66	n:300000
Cons ci ratio: 2.692682e-02	ci left: 6.509420e-02	ci right 6.687419e-02	k: 19794	n:300000
KS ci ratio: 2.612349e-01	ci left: 6.521107e-04	ci right 8.510717e-04	k: 224	n:300000
SLC15A3   300000 perm   97 sec   (3098 perm/sec)   p_kst 7.466667e-04   p_cons 6.598000e-02   p_joint 2.200000e-04

Joint ci ratio: 3.533838e-01	ci left: 3.268285e-04	ci right 4.698794e-04	k: 122	n:310000
Cons ci ratio: 2.648537e-02	ci left: 6.512524e-02	ci right 6.687643e-02	k: 20459	n:310000
KS ci ratio: 2.589448e-01	ci left: 6.431365e-04	ci right 8.373610e-04	k: 228	n:310000
SLC15A3   310000 perm   101 sec   (3056 perm/sec)   p_kst 7.354839e-04   p_cons 6.599677e-02   p_joint 3.935484e-04

Joint ci ratio: 3.505464e-01	ci left: 3.223125e-04	ci right 4.619963e-04	k: 124	n:320000
Cons ci ratio: 2.605703e-02	ci left: 6.519183e-02	ci right 6.691604e-02	k: 21136	n:320000
KS ci ratio: 2.540010e-01	ci left: 6.493560e-04	ci right 8.411220e-04	k: 237	n:320000
SLC15A3   320000 perm   106 sec   (3016 perm/sec)   p_kst 7.406250e-04   p_cons 6.605000e-02   p_joint 3.875000e-04

Joint ci ratio: 3.477763e-01	ci left: 3.180744e-04	ci right 4.545866e-04	k: 126	n:330000
Cons ci ratio: 2.563498e-02	ci left: 6.532087e-02	ci right 6.702009e-02	k: 21835	n:330000
KS ci ratio: 2.483258e-01	ci left: 6.609145e-04	ci right 8.510597e-04	k: 248	n:330000
SLC15A3   330000 perm   111 sec   (2976 perm/sec)   p_kst 7.515152e-04   p_cons 6.616667e-02   p_joint 3.818182e-04

Joint ci ratio: 3.411255e-01	ci left: 3.221533e-04	ci right 4.571893e-04	k: 131	n:340000
Cons ci ratio: 2.526642e-02	ci left: 6.527878e-02	ci right 6.695215e-02	k: 22478	n:340000
KS ci ratio: 2.453875e-01	ci left: 6.580312e-04	ci right 8.447653e-04	k: 254	n:340000
SLC15A3   340000 perm   116 sec   (2938 perm/sec)   p_kst 7.470588e-04   p_cons 6.611176e-02   p_joint 3.852941e-04

Joint ci ratio: 3.373143e-01	ci left: 3.207902e-04	ci right 4.534257e-04	k: 134	n:350000
Cons ci ratio: 2.492718e-02	ci left: 6.517110e-02	ci right 6.681895e-02	k: 23097	n:350000
KS ci ratio: 2.420874e-01	ci left: 6.580089e-04	ci right 8.418483e-04	k: 261	n:350000
SLC15A3   350000 perm   121 sec   (2900 perm/sec)   p_kst 7.457143e-04   p_cons 6.599143e-02   p_joint 3.828571e-04

Joint ci ratio: 3.312356e-01	ci left: 3.246028e-04	ci right 4.558806e-04	k: 139	n:360000
Cons ci ratio: 2.459679e-02	ci left: 6.509164e-02	ci right 6.671536e-02	k: 23724	n:360000
KS ci ratio: 2.393626e-01	ci left: 6.553922e-04	ci right 8.361338e-04	k: 267	n:360000
SLC15A3   360000 perm   126 sec   (2864 perm/sec)   p_kst 7.416667e-04   p_cons 6.590000e-02   p_joint 3.861111e-04

Joint ci ratio: 3.277431e-01	ci left: 3.232672e-04	ci right 4.523360e-04	k: 142	n:370000
Cons ci ratio: 2.425629e-02	ci left: 6.513217e-02	ci right 6.673409e-02	k: 24394	n:370000
KS ci ratio: 2.354415e-01	ci left: 6.605567e-04	ci right 8.393037e-04	k: 276	n:370000
SLC15A3   370000 perm   131 sec   (2827 perm/sec)   p_kst 7.459459e-04   p_cons 6.592973e-02   p_joint 3.837838e-04

Joint ci ratio: 3.232532e-01	ci left: 3.244265e-04	ci right 4.518158e-04	k: 146	n:380000
Cons ci ratio: 2.394898e-02	ci left: 6.507127e-02	ci right 6.665114e-02	k: 25026	n:380000
KS ci ratio: 2.350197e-01	ci left: 6.456496e-04	ci right 8.200040e-04	k: 277	n:380000
SLC15A3   380000 perm   136 sec   (2789 perm/sec)   p_kst 7.289474e-04   p_cons 6.585789e-02   p_joint 3.842105e-04

Joint ci ratio: 3.592905e-01	ci left: 2.504465e-04	ci right 3.623264e-04	k: 118	n:390000
Cons ci ratio: 2.361320e-02	ci left: 6.522017e-02	ci right 6.678116e-02	k: 25739	n:390000
KS ci ratio: 2.317092e-01	ci left: 6.484082e-04	ci right 8.206881e-04	k: 285	n:390000
SLC15A3   390000 perm   142 sec   (2747 perm/sec)   p_kst 7.307692e-04   p_cons 6.599744e-02   p_joint 3.025641e-04

Joint ci ratio: 3.577913e-01	ci left: 2.464601e-04	ci right 3.559927e-04	k: 119	n:400000
Cons ci ratio: 2.331333e-02	ci left: 6.524491e-02	ci right 6.678639e-02	k: 26405	n:400000
KS ci ratio: 2.254852e-01	ci left: 6.699087e-04	ci right 8.424560e-04	k: 301	n:400000
SLC15A3   400000 perm   148 sec   (2703 perm/sec)   p_kst 7.525000e-04   p_cons 6.601250e-02   p_joint 2.975000e-04

Joint ci ratio: 3.505616e-01	ci left: 2.515592e-04	ci right 3.605854e-04	k: 124	n:410000
Cons ci ratio: 2.301368e-02	ci left: 6.532678e-02	ci right 6.685009e-02	k: 27095	n:410000
KS ci ratio: 2.197372e-01	ci left: 6.904190e-04	ci right 8.631038e-04	k: 317	n:410000
SLC15A3   410000 perm   154 sec   (2662 perm/sec)   p_kst 7.731707e-04   p_cons 6.608537e-02   p_joint 3.024390e-04

Joint ci ratio: 3.477907e-01	ci left: 2.499140e-04	ci right 3.571780e-04	k: 126	n:420000
Cons ci ratio: 2.272529e-02	ci left: 6.540487e-02	ci right 6.691064e-02	k: 27785	n:420000
KS ci ratio: 2.190509e-01	ci left: 6.784802e-04	ci right 8.475775e-04	k: 319	n:420000
SLC15A3   420000 perm   160 sec   (2621 perm/sec)   p_kst 7.595238e-04   p_cons 6.615476e-02   p_joint 3.000000e-04

Joint ci ratio: 3.477920e-01	ci left: 2.441019e-04	ci right 3.488718e-04	k: 126	n:430000
Cons ci ratio: 2.246523e-02	ci left: 6.538228e-02	ci right 6.687008e-02	k: 28433	n:430000
KS ci ratio: 2.187111e-01	ci left: 6.648992e-04	ci right 8.303200e-04	k: 320	n:430000
SLC15A3   430000 perm   166 sec   (2590 perm/sec)   p_kst 7.441860e-04   p_cons 6.612326e-02   p_joint 2.930233e-04

Joint ci ratio: 3.450858e-01	ci left: 2.427041e-04	ci right 3.458824e-04	k: 128	n:440000
Cons ci ratio: 2.220695e-02	ci left: 6.539925e-02	ci right 6.687011e-02	k: 29098	n:440000
KS ci ratio: 2.160355e-01	ci left: 6.669799e-04	ci right 8.306191e-04	k: 328	n:440000
SLC15A3   440000 perm   172 sec   (2560 perm/sec)   p_kst 7.454545e-04   p_cons 6.613182e-02   p_joint 2.909091e-04

Joint ci ratio: 3.398565e-01	ci left: 2.454352e-04	ci right 3.478464e-04	k: 132	n:450000
Cons ci ratio: 2.196488e-02	ci left: 6.537355e-02	ci right 6.682760e-02	k: 29744	n:450000
KS ci ratio: 2.137734e-01	ci left: 6.668765e-04	ci right 8.285525e-04	k: 335	n:450000
SLC15A3   450000 perm   178 sec   (2533 perm/sec)   p_kst 7.444444e-04   p_cons 6.609778e-02   p_joint 2.933333e-04

Joint ci ratio: 3.373300e-01	ci left: 2.440778e-04	ci right 3.450007e-04	k: 134	n:460000
Cons ci ratio: 2.172712e-02	ci left: 6.536851e-02	ci right 6.680652e-02	k: 30399	n:460000
KS ci ratio: 2.118903e-01	ci left: 6.647274e-04	ci right 8.242783e-04	k: 341	n:460000
SLC15A3   460000 perm   184 sec   (2503 perm/sec)   p_kst 7.413043e-04   p_cons 6.608478e-02   p_joint 2.913043e-04

Joint ci ratio: 3.312508e-01	ci left: 2.486303e-04	ci right 3.491880e-04	k: 139	n:470000
Cons ci ratio: 2.149469e-02	ci left: 6.537648e-02	ci right 6.679909e-02	k: 31060	n:470000
KS ci ratio: 2.094546e-01	ci left: 6.667076e-04	ci right 8.246583e-04	k: 349	n:470000
SLC15A3   470000 perm   190 sec   (2476 perm/sec)   p_kst 7.425532e-04   p_cons 6.608511e-02   p_joint 2.957447e-04

Joint ci ratio: 3.243718e-01	ci left: 2.549221e-04	ci right 3.554380e-04	k: 145	n:480000
Cons ci ratio: 2.125450e-02	ci left: 6.547126e-02	ci right 6.687982e-02	k: 31763	n:480000
KS ci ratio: 2.071009e-01	ci left: 6.686153e-04	ci right 8.250126e-04	k: 357	n:480000
SLC15A3   480000 perm   196 sec   (2448 perm/sec)   p_kst 7.437500e-04   p_cons 6.617292e-02   p_joint 3.020833e-04

Joint ci ratio: 2.850828e-01	ci left: 3.307954e-04	ci right 4.425979e-04	k: 188	n:490000
Cons ci ratio: 2.105310e-02	ci left: 6.538151e-02	ci right 6.677465e-02	k: 32377	n:490000
KS ci ratio: 2.051055e-01	ci left: 6.685186e-04	ci right 8.231976e-04	k: 364	n:490000
SLC15A3   490000 perm   202 sec   (2423 perm/sec)   p_kst 7.428571e-04   p_cons 6.607551e-02   p_joint 3.836735e-04

Joint ci ratio: 3.210907e-01	ci left: 2.502391e-04	ci right 3.477051e-04	k: 148	n:500000
Cons ci ratio: 2.084751e-02	ci left: 6.535313e-02	ci right 6.673190e-02	k: 33020	n:500000
KS ci ratio: 2.039915e-01	ci left: 6.627382e-04	ci right 8.151431e-04	k: 368	n:500000
SLC15A3   500000 perm   209 sec   (2398 perm/sec)   p_kst 7.360000e-04   p_cons 6.604000e-02   p_joint 2.960000e-04

Joint ci ratio: 2.806631e-01	ci left: 3.287533e-04	ci right 4.378382e-04	k: 194	n:510000
Cons ci ratio: 2.066493e-02	ci left: 6.522446e-02	ci right 6.658832e-02	k: 33611	n:510000
KS ci ratio: 2.018154e-01	ci left: 6.646328e-04	ci right 8.156420e-04	k: 376	n:510000
SLC15A3   510000 perm   215 sec   (2373 perm/sec)   p_kst 7.372549e-04   p_cons 6.590392e-02   p_joint 3.803922e-04

Joint ci ratio: 2.778280e-01	ci left: 3.295848e-04	ci right 4.376478e-04	k: 198	n:520000
Cons ci ratio: 2.046081e-02	ci left: 6.525773e-02	ci right 6.660865e-02	k: 34284	n:520000
KS ci ratio: 1.999676e-01	ci left: 6.646358e-04	ci right 8.140944e-04	k: 383	n:520000
SLC15A3   520000 perm   221 sec   (2349 perm/sec)   p_kst 7.365385e-04   p_cons 6.593077e-02   p_joint 3.807692e-04

Joint ci ratio: 2.750771e-01	ci left: 3.303903e-04	ci right 4.374593e-04	k: 202	n:530000
Cons ci ratio: 2.027442e-02	ci left: 6.521845e-02	ci right 6.655611e-02	k: 34919	n:530000
KS ci ratio: 1.979165e-01	ci left: 6.664380e-04	ci right 8.145793e-04	k: 391	n:530000
SLC15A3   530000 perm   228 sec   (2323 perm/sec)   p_kst 7.377358e-04   p_cons 6.588491e-02   p_joint 3.811321e-04

Joint ci ratio: 2.737324e-01	ci left: 3.277208e-04	ci right 4.333162e-04	k: 204	n:540000
Cons ci ratio: 2.008849e-02	ci left: 6.520832e-02	ci right 6.653337e-02	k: 35569	n:540000
KS ci ratio: 1.969150e-01	ci left: 6.611377e-04	ci right 8.072678e-04	k: 395	n:540000
SLC15A3   540000 perm   235 sec   (2300 perm/sec)   p_kst 7.314815e-04   p_cons 6.586852e-02   p_joint 3.777778e-04

Joint ci ratio: 2.717514e-01	ci left: 3.268438e-04	ci right 4.312644e-04	k: 207	n:550000
Cons ci ratio: 1.989877e-02	ci left: 6.525292e-02	ci right 6.656621e-02	k: 36249	n:550000
KS ci ratio: 1.951974e-01	ci left: 6.612195e-04	ci right 8.059414e-04	k: 402	n:550000
SLC15A3   550000 perm   241 sec   (2278 perm/sec)   p_kst 7.309091e-04   p_cons 6.590727e-02   p_joint 3.763636e-04

Joint ci ratio: 2.660551e-01	ci left: 3.359957e-04	ci right 4.407151e-04	k: 216	n:560000
Cons ci ratio: 1.970804e-02	ci left: 6.533508e-02	ci right 6.663727e-02	k: 36951	n:560000
KS ci ratio: 1.930533e-01	ci left: 6.647025e-04	ci right 8.084010e-04	k: 411	n:560000
SLC15A3   560000 perm   248 sec   (2254 perm/sec)   p_kst 7.339286e-04   p_cons 6.598393e-02   p_joint 3.857143e-04

Joint ci ratio: 2.624510e-01	ci left: 3.399302e-04	ci right 4.442051e-04	k: 222	n:570000
Cons ci ratio: 1.953798e-02	ci left: 6.531836e-02	ci right 6.660886e-02	k: 37598	n:570000
KS ci ratio: 1.914340e-01	ci left: 6.647307e-04	ci right 8.070896e-04	k: 418	n:570000
SLC15A3   570000 perm   255 sec   (2233 perm/sec)   p_kst 7.333333e-04   p_cons 6.596140e-02   p_joint 3.894737e-04

Joint ci ratio: 2.785345e-01	ci left: 2.938852e-04	ci right 3.905310e-04	k: 197	n:580000
Cons ci ratio: 1.936303e-02	ci left: 6.536062e-02	ci right 6.664027e-02	k: 38279	n:580000
KS ci ratio: 1.889689e-01	ci left: 6.713325e-04	ci right 8.130415e-04	k: 429	n:580000
SLC15A3   580000 perm   262 sec   (2211 perm/sec)   p_kst 7.396552e-04   p_cons 6.599828e-02   p_joint 3.396552e-04

Joint ci ratio: 2.744072e-01	ci left: 2.983687e-04	ci right 3.947844e-04	k: 203	n:590000
Cons ci ratio: 1.920008e-02	ci left: 6.535426e-02	ci right 6.662289e-02	k: 38932	n:590000
KS ci ratio: 1.872351e-01	ci left: 6.728749e-04	ci right 8.134582e-04	k: 437	n:590000
SLC15A3   590000 perm   269 sec   (2190 perm/sec)   p_kst 7.406780e-04   p_cons 6.598644e-02   p_joint 3.440678e-04

Joint ci ratio: 2.698162e-01	ci left: 3.042669e-04	ci right 4.006651e-04	k: 210	n:600000
Cons ci ratio: 1.904041e-02	ci left: 6.535312e-02	ci right 6.661107e-02	k: 39588	n:600000
KS ci ratio: 1.847211e-01	ci left: 6.807295e-04	ci right 8.208303e-04	k: 449	n:600000
SLC15A3   600000 perm   277 sec   (2169 perm/sec)   p_kst 7.483333e-04   p_cons 6.598000e-02   p_joint 3.500000e-04

Joint ci ratio: 2.685469e-01	ci left: 3.023363e-04	ci right 3.975963e-04	k: 212	n:610000
Cons ci ratio: 1.887862e-02	ci left: 6.539124e-02	ci right 6.663911e-02	k: 40268	n:610000
KS ci ratio: 1.823057e-01	ci left: 6.883387e-04	ci right 8.279485e-04	k: 461	n:610000
SLC15A3   610000 perm   284 sec   (2149 perm/sec)   p_kst 7.557377e-04   p_cons 6.601311e-02   p_joint 3.475410e-04

Joint ci ratio: 2.672952e-01	ci left: 3.004690e-04	ci right 3.946255e-04	k: 214	n:620000
Cons ci ratio: 1.871943e-02	ci left: 6.543781e-02	ci right 6.667593e-02	k: 40954	n:620000
KS ci ratio: 1.807474e-01	ci left: 6.895534e-04	ci right 8.280834e-04	k: 469	n:620000
SLC15A3   620000 perm   291 sec   (2130 perm/sec)   p_kst 7.564516e-04   p_cons 6.605484e-02   p_joint 3.451613e-04

Joint ci ratio: 2.660609e-01	ci left: 2.986620e-04	ci right 3.917480e-04	k: 216	n:630000
Cons ci ratio: 1.857232e-02	ci left: 6.542921e-02	ci right 6.665733e-02	k: 41606	n:630000
KS ci ratio: 1.794164e-01	ci left: 6.892184e-04	ci right 8.265506e-04	k: 476	n:630000
SLC15A3   630000 perm   299 sec   (2110 perm/sec)   p_kst 7.555556e-04   p_cons 6.604127e-02   p_joint 3.428571e-04

Joint ci ratio: 2.642407e-01	ci left: 2.983714e-04	ci right 3.906253e-04	k: 219	n:640000
Cons ci ratio: 1.842278e-02	ci left: 6.545980e-02	ci right 6.667850e-02	k: 42283	n:640000
KS ci ratio: 1.779304e-01	ci left: 6.903904e-04	ci right 8.266942e-04	k: 484	n:640000
SLC15A3   640000 perm   306 sec   (2092 perm/sec)   p_kst 7.562500e-04   p_cons 6.606719e-02   p_joint 3.421875e-04

Joint ci ratio: 2.630480e-01	ci left: 2.966546e-04	ci right 3.878955e-04	k: 221	n:650000
Cons ci ratio: 1.828364e-02	ci left: 6.544354e-02	ci right 6.665264e-02	k: 42930	n:650000
KS ci ratio: 1.768402e-01	ci left: 6.885898e-04	ci right 8.236161e-04	k: 490	n:650000
SLC15A3   650000 perm   314 sec   (2072 perm/sec)   p_kst 7.538462e-04   p_cons 6.604615e-02   p_joint 3.400000e-04

Joint ci ratio: 2.624581e-01	ci left: 2.935751e-04	ci right 3.836331e-04	k: 222	n:660000
Cons ci ratio: 1.814092e-02	ci left: 6.547307e-02	ci right 6.667317e-02	k: 43607	n:660000
KS ci ratio: 1.764818e-01	ci left: 6.810527e-04	ci right 8.143016e-04	k: 492	n:660000
SLC15A3   660000 perm   321 sec   (2054 perm/sec)   p_kst 7.454545e-04   p_cons 6.607121e-02   p_joint 3.363636e-04

Joint ci ratio: 2.601353e-01	ci left: 2.947726e-04	ci right 3.842675e-04	k: 226	n:670000
Cons ci ratio: 1.800388e-02	ci left: 6.548540e-02	ci right 6.667657e-02	k: 44273	n:670000
KS ci ratio: 1.750671e-01	ci left: 6.823028e-04	ci right 8.146128e-04	k: 500	n:670000
SLC15A3   670000 perm   329 sec   (2036 perm/sec)   p_kst 7.462687e-04   p_cons 6.607910e-02   p_joint 3.373134e-04

Joint ci ratio: 2.595646e-01	ci left: 2.918124e-04	ci right 3.801828e-04	k: 227	n:680000
Cons ci ratio: 1.787012e-02	ci left: 6.549594e-02	ci right 6.667835e-02	k: 44938	n:680000
KS ci ratio: 1.745458e-01	ci left: 6.764875e-04	ci right 8.072381e-04	k: 503	n:680000
SLC15A3   680000 perm   337 sec   (2018 perm/sec)   p_kst 7.397059e-04   p_cons 6.608529e-02   p_joint 3.338235e-04

Joint ci ratio: 2.573172e-01	ci left: 2.930049e-04	ci right 3.808446e-04	k: 231	n:690000
Cons ci ratio: 1.773762e-02	ci left: 6.551775e-02	ci right 6.669170e-02	k: 45611	n:690000
KS ci ratio: 1.728393e-01	ci left: 6.805461e-04	ci right 8.106610e-04	k: 513	n:690000
SLC15A3   690000 perm   345 sec   (2000 perm/sec)   p_kst 7.434783e-04   p_cons 6.610290e-02   p_joint 3.347826e-04

Joint ci ratio: 2.545881e-01	ci left: 2.955038e-04	ci right 3.830040e-04	k: 236	n:700000
Cons ci ratio: 1.761109e-02	ci left: 6.551762e-02	ci right 6.668311e-02	k: 46269	n:700000
KS ci ratio: 1.720050e-01	ci left: 6.776586e-04	ci right 8.065311e-04	k: 518	n:700000
SLC15A3   700000 perm   353 sec   (1982 perm/sec)   p_kst 7.400000e-04   p_cons 6.609857e-02   p_joint 3.371429e-04

Joint ci ratio: 2.529920e-01	ci left: 2.952984e-04	ci right 3.821032e-04	k: 239	n:710000
Cons ci ratio: 1.748483e-02	ci left: 6.553437e-02	ci right 6.669171e-02	k: 46939	n:710000
KS ci ratio: 1.710194e-01	ci left: 6.762020e-04	ci right 8.039846e-04	k: 524	n:710000
SLC15A3   710000 perm   361 sec   (1965 perm/sec)   p_kst 7.380282e-04   p_cons 6.611127e-02   p_joint 3.366197e-04

Joint ci ratio: 2.509096e-01	ci left: 2.964018e-04	ci right 3.827018e-04	k: 243	n:720000
Cons ci ratio: 1.737494e-02	ci left: 6.545384e-02	ci right 6.660243e-02	k: 47539	n:720000
KS ci ratio: 1.700507e-01	ci left: 6.747879e-04	ci right 8.015069e-04	k: 530	n:720000
SLC15A3   720000 perm   370 sec   (1948 perm/sec)   p_kst 7.361111e-04   p_cons 6.602639e-02   p_joint 3.375000e-04

Joint ci ratio: 2.488778e-01	ci left: 2.974779e-04	ci right 3.832811e-04	k: 247	n:730000
Cons ci ratio: 1.725979e-02	ci left: 6.542739e-02	ci right 6.656783e-02	k: 48177	n:730000
KS ci ratio: 1.686274e-01	ci left: 6.773506e-04	ci right 8.033781e-04	k: 539	n:730000
SLC15A3   730000 perm   378 sec   (1931 perm/sec)   p_kst 7.383562e-04   p_cons 6.599589e-02   p_joint 3.383562e-04

Joint ci ratio: 2.464060e-01	ci left: 2.997954e-04	ci right 3.852768e-04	k: 252	n:740000
Cons ci ratio: 1.714615e-02	ci left: 6.540707e-02	ci right 6.653957e-02	k: 48819	n:740000
KS ci ratio: 1.673920e-01	ci left: 6.785535e-04	ci right 8.037865e-04	k: 547	n:740000
SLC15A3   740000 perm   387 sec   (1911 perm/sec)   p_kst 7.391892e-04   p_cons 6.597162e-02   p_joint 3.405405e-04

Joint ci ratio: 2.449580e-01	ci left: 2.995519e-04	ci right 3.843856e-04	k: 255	n:750000
Cons ci ratio: 1.702938e-02	ci left: 6.542582e-02	ci right 6.655086e-02	k: 49490	n:750000
KS ci ratio: 1.657364e-01	ci left: 6.835615e-04	ci right 8.083467e-04	k: 558	n:750000
SLC15A3   750000 perm   397 sec   (1891 perm/sec)   p_kst 7.440000e-04   p_cons 6.598667e-02   p_joint 3.400000e-04

Joint ci ratio: 2.435353e-01	ci left: 2.993162e-04	ci right 3.835164e-04	k: 258	n:760000
Cons ci ratio: 1.690505e-02	ci left: 6.551620e-02	ci right 6.663448e-02	k: 50216	n:760000
KS ci ratio: 1.647084e-01	ci left: 6.833970e-04	ci right 8.073016e-04	k: 565	n:760000
SLC15A3   760000 perm   406 sec   (1870 perm/sec)   p_kst 7.434211e-04   p_cons 6.607368e-02   p_joint 3.394737e-04

Joint ci ratio: 2.426006e-01	ci left: 2.978682e-04	ci right 3.812910e-04	k: 260	n:770000
Cons ci ratio: 1.679452e-02	ci left: 6.552275e-02	ci right 6.663377e-02	k: 50879	n:770000
KS ci ratio: 1.635565e-01	ci left: 6.844846e-04	ci right 8.076331e-04	k: 573	n:770000
SLC15A3   770000 perm   416 sec   (1851 perm/sec)   p_kst 7.441558e-04   p_cons 6.607662e-02   p_joint 3.376623e-04

Joint ci ratio: 2.412183e-01	ci left: 2.976624e-04	ci right 3.804815e-04	k: 263	n:780000
Cons ci ratio: 1.668769e-02	ci left: 6.551766e-02	ci right 6.662146e-02	k: 51533	n:780000
KS ci ratio: 1.628491e-01	ci left: 6.818575e-04	ci right 8.039508e-04	k: 578	n:780000
SLC15A3   780000 perm   426 sec   (1833 perm/sec)   p_kst 7.410256e-04   p_cons 6.606795e-02   p_joint 3.371795e-04

Joint ci ratio: 2.380820e-01	ci left: 3.022233e-04	ci right 3.850569e-04	k: 270	n:790000
Cons ci ratio: 1.657539e-02	ci left: 6.556821e-02	ci right 6.666535e-02	k: 52231	n:790000
KS ci ratio: 1.615978e-01	ci left: 6.841564e-04	ci right 8.056286e-04	k: 587	n:790000
SLC15A3   790000 perm   435 sec   (1817 perm/sec)   p_kst 7.430380e-04   p_cons 6.611519e-02   p_joint 3.417722e-04

Joint ci ratio: 2.359154e-01	ci left: 3.043245e-04	ci right 3.868641e-04	k: 275	n:800000
Cons ci ratio: 1.647917e-02	ci left: 6.551416e-02	ci right 6.660398e-02	k: 52846	n:800000
KS ci ratio: 1.605095e-01	ci left: 6.852014e-04	ci right 8.059609e-04	k: 595	n:800000
SLC15A3   800000 perm   444 sec   (1802 perm/sec)   p_kst 7.437500e-04   p_cons 6.605750e-02   p_joint 3.437500e-04

Joint ci ratio: 2.350655e-01	ci left: 3.028908e-04	ci right 3.847026e-04	k: 277	n:810000
Cons ci ratio: 1.638395e-02	ci left: 6.546639e-02	ci right 6.654906e-02	k: 53465	n:810000
KS ci ratio: 1.591794e-01	ci left: 6.885941e-04	ci right 8.088498e-04	k: 605	n:810000
SLC15A3   810000 perm   453 sec   (1787 perm/sec)   p_kst 7.469136e-04   p_cons 6.600617e-02   p_joint 3.419753e-04

Joint ci ratio: 2.329795e-01	ci left: 3.049372e-04	ci right 3.864654e-04	k: 282	n:820000
Cons ci ratio: 1.628424e-02	ci left: 6.546597e-02	ci right 6.654198e-02	k: 54122	n:820000
KS ci ratio: 1.578819e-01	ci left: 6.919080e-04	ci right 8.116642e-04	k: 615	n:820000
SLC15A3   820000 perm   463 sec   (1771 perm/sec)   p_kst 7.500000e-04   p_cons 6.600244e-02   p_joint 3.439024e-04

Joint ci ratio: 2.317544e-01	ci left: 3.046673e-04	ci right 3.856337e-04	k: 285	n:830000
Cons ci ratio: 1.619012e-02	ci left: 6.543677e-02	ci right 6.650602e-02	k: 54755	n:830000
KS ci ratio: 1.568665e-01	ci left: 6.928308e-04	ci right 8.119029e-04	k: 623	n:830000
SLC15A3   830000 perm   473 sec   (1756 perm/sec)   p_kst 7.506024e-04   p_cons 6.596988e-02   p_joint 3.433735e-04

Joint ci ratio: 2.309485e-01	ci left: 3.032832e-04	ci right 3.835616e-04	k: 287	n:840000
Cons ci ratio: 1.608845e-02	ci left: 6.547825e-02	ci right 6.654141e-02	k: 55447	n:840000
KS ci ratio: 1.557472e-01	ci left: 6.948781e-04	ci right 8.133703e-04	k: 632	n:840000
SLC15A3   840000 perm   483 sec   (1739 perm/sec)   p_kst 7.523810e-04   p_cons 6.600833e-02   p_joint 3.416667e-04

Joint ci ratio: 2.301509e-01	ci left: 3.019322e-04	ci right 3.815377e-04	k: 289	n:850000
Cons ci ratio: 1.599629e-02	ci left: 6.546018e-02	ci right 6.651690e-02	k: 56089	n:850000
KS ci ratio: 1.544110e-01	ci left: 6.991422e-04	ci right 8.172441e-04	k: 643	n:850000
SLC15A3   850000 perm   493 sec   (1724 perm/sec)   p_kst 7.564706e-04   p_cons 6.598706e-02   p_joint 3.400000e-04

Joint ci ratio: 2.297555e-01	ci left: 2.995171e-04	ci right 3.783310e-04	k: 290	n:860000
Cons ci ratio: 1.589910e-02	ci left: 6.549352e-02	ci right 6.654429e-02	k: 56775	n:860000
KS ci ratio: 1.536968e-01	ci left: 6.977204e-04	ci right 8.149868e-04	k: 649	n:860000
SLC15A3   860000 perm   502 sec   (1712 perm/sec)   p_kst 7.546512e-04   p_cons 6.601744e-02   p_joint 3.372093e-04

Joint ci ratio: 2.281924e-01	ci left: 3.004084e-04	ci right 3.788433e-04	k: 294	n:870000
Cons ci ratio: 1.580837e-02	ci left: 6.548946e-02	ci right 6.653412e-02	k: 57429	n:870000
KS ci ratio: 1.528759e-01	ci left: 6.974380e-04	ci right 8.139735e-04	k: 656	n:870000
SLC15A3   870000 perm   512 sec   (1699 perm/sec)   p_kst 7.540230e-04   p_cons 6.601034e-02   p_joint 3.379310e-04

Joint ci ratio: 2.278069e-01	ci left: 2.980661e-04	ci right 3.757395e-04	k: 295	n:880000
Cons ci ratio: 1.571137e-02	ci left: 6.554665e-02	ci right 6.658575e-02	k: 58137	n:880000
KS ci ratio: 1.519535e-01	ci left: 6.982567e-04	ci right 8.141611e-04	k: 664	n:880000
SLC15A3   880000 perm   522 sec   (1686 perm/sec)   p_kst 7.545455e-04   p_cons 6.606477e-02   p_joint 3.352273e-04

Joint ci ratio: 2.266612e-01	ci left: 2.978960e-04	ci right 3.750800e-04	k: 298	n:890000
Cons ci ratio: 1.562337e-02	ci left: 6.554548e-02	ci right 6.657869e-02	k: 58794	n:890000
KS ci ratio: 1.510477e-01	ci left: 6.990592e-04	ci right 8.143425e-04	k: 672	n:890000
SLC15A3   890000 perm   532 sec   (1673 perm/sec)   p_kst 7.550562e-04   p_cons 6.606067e-02   p_joint 3.348315e-04

Joint ci ratio: 2.255327e-01	ci left: 2.977306e-04	ci right 3.744343e-04	k: 301	n:900000
Cons ci ratio: 1.553824e-02	ci left: 6.553329e-02	ci right 6.656062e-02	k: 59441	n:900000
KS ci ratio: 1.499376e-01	ci left: 7.019847e-04	ci right 8.168233e-04	k: 682	n:900000
SLC15A3   900000 perm   542 sec   (1661 perm/sec)   p_kst 7.577778e-04   p_cons 6.604556e-02   p_joint 3.344444e-04

Joint ci ratio: 2.247897e-01	ci left: 2.965326e-04	ci right 3.726412e-04	k: 303	n:910000
Cons ci ratio: 1.545544e-02	ci left: 6.551371e-02	ci right 6.653521e-02	k: 60081	n:910000
KS ci ratio: 1.493920e-01	ci left: 6.995592e-04	ci right 8.135474e-04	k: 687	n:910000
SLC15A3   910000 perm   552 sec   (1649 perm/sec)   p_kst 7.549451e-04   p_cons 6.602308e-02   p_joint 3.329670e-04

Joint ci ratio: 2.244212e-01	ci left: 2.943352e-04	ci right 3.697388e-04	k: 304	n:920000
Cons ci ratio: 1.537125e-02	ci left: 6.551623e-02	ci right 6.653216e-02	k: 60741	n:920000
KS ci ratio: 1.488523e-01	ci left: 6.971873e-04	ci right 8.103420e-04	k: 692	n:920000
SLC15A3   920000 perm   562 sec   (1637 perm/sec)   p_kst 7.521739e-04   p_cons 6.602283e-02   p_joint 3.304348e-04

Joint ci ratio: 2.236892e-01	ci left: 2.932001e-04	ci right 3.680342e-04	k: 306	n:930000
Cons ci ratio: 1.529068e-02	ci left: 6.550049e-02	ci right 6.651081e-02	k: 61384	n:930000
KS ci ratio: 1.482122e-01	ci left: 6.959024e-04	ci right 8.083199e-04	k: 698	n:930000
SLC15A3   930000 perm   572 sec   (1626 perm/sec)   p_kst 7.505376e-04   p_cons 6.600430e-02   p_joint 3.290323e-04

Joint ci ratio: 2.222459e-01	ci left: 2.940987e-04	ci right 3.686115e-04	k: 310	n:940000
Cons ci ratio: 1.520770e-02	ci left: 6.551479e-02	ci right 6.651980e-02	k: 62055	n:940000
KS ci ratio: 1.474757e-01	ci left: 6.956705e-04	ci right 8.074429e-04	k: 705	n:940000
SLC15A3   940000 perm   582 sec   (1615 perm/sec)   p_kst 7.500000e-04   p_cons 6.601596e-02   p_joint 3.297872e-04

Joint ci ratio: 2.215349e-01	ci left: 2.929911e-04	ci right 3.669535e-04	k: 312	n:950000
Cons ci ratio: 1.512501e-02	ci left: 6.553720e-02	ci right 6.653703e-02	k: 62734	n:950000
KS ci ratio: 1.468531e-01	ci left: 6.944309e-04	ci right 8.054917e-04	k: 711	n:950000
SLC15A3   950000 perm   592 sec   (1604 perm/sec)   p_kst 7.484211e-04   p_cons 6.603579e-02   p_joint 3.284211e-04

Joint ci ratio: 2.208306e-01	ci left: 2.919070e-04	ci right 3.653296e-04	k: 314	n:960000
Cons ci ratio: 1.504773e-02	ci left: 6.552593e-02	ci right 6.652044e-02	k: 63381	n:960000
KS ci ratio: 1.461365e-01	ci left: 6.942216e-04	ci right 8.046599e-04	k: 718	n:960000
SLC15A3   960000 perm   603 sec   (1592 perm/sec)   p_kst 7.479167e-04   p_cons 6.602187e-02   p_joint 3.270833e-04

Joint ci ratio: 2.194417e-01	ci left: 2.927941e-04	ci right 3.659141e-04	k: 318	n:970000
Cons ci ratio: 1.496724e-02	ci left: 6.555086e-02	ci right 6.654039e-02	k: 64063	n:970000
KS ci ratio: 1.456312e-01	ci left: 6.920311e-04	ci right 8.017072e-04	k: 723	n:970000
SLC15A3   970000 perm   614 sec   (1581 perm/sec)   p_kst 7.453608e-04   p_cons 6.604433e-02   p_joint 3.278351e-04

Joint ci ratio: 2.190988e-01	ci left: 2.907707e-04	ci right 3.632566e-04	k: 319	n:980000
Cons ci ratio: 1.489579e-02	ci left: 6.551124e-02	ci right 6.649541e-02	k: 64682	n:980000
KS ci ratio: 1.451311e-01	ci left: 6.898860e-04	ci right 7.988141e-04	k: 728	n:980000
SLC15A3   980000 perm   624 sec   (1570 perm/sec)   p_kst 7.428571e-04   p_cons 6.600204e-02   p_joint 3.255102e-04

Joint ci ratio: 2.177420e-01	ci left: 2.916530e-04	ci right 3.638485e-04	k: 323	n:990000
Cons ci ratio: 1.482353e-02	ci left: 6.548753e-02	ci right 6.646653e-02	k: 65316	n:990000
KS ci ratio: 1.441456e-01	ci left: 6.926530e-04	ci right 8.012115e-04	k: 738	n:990000
SLC15A3   990000 perm   635 sec   (1559 perm/sec)   p_kst 7.454545e-04   p_cons 6.597576e-02   p_joint 3.262626e-04

Joint ci ratio: 2.174070e-01	ci left: 2.896820e-04	ci right 3.612644e-04	k: 324	n:1000000
Cons ci ratio: 1.474944e-02	ci left: 6.548822e-02	ci right 6.646229e-02	k: 65974	n:1000000
KS ci ratio: 1.432757e-01	ci left: 6.944029e-04	ci right 8.025227e-04	k: 747	n:1000000
SLC15A3   1000000 perm   646 sec   (1548 perm/sec)   p_kst 7.470000e-04   p_cons 6.597400e-02   p_joint 3.240000e-04

Joint ci ratio: 2.151025e-01	ci left: 2.933692e-04	ci right 3.649930e-04	k: 331	n:1010000
Cons ci ratio: 1.467491e-02	ci left: 6.550174e-02	ci right 6.647105e-02	k: 66645	n:1010000
KS ci ratio: 1.423273e-01	ci left: 6.970749e-04	ci right 8.048313e-04	k: 757	n:1010000
SLC15A3   1010000 perm   657 sec   (1536 perm/sec)   p_kst 7.495050e-04   p_cons 6.598515e-02   p_joint 3.277228e-04

Joint ci ratio: 2.141372e-01	ci left: 2.932761e-04	ci right 3.645136e-04	k: 334	n:1020000
Cons ci ratio: 1.459976e-02	ci left: 6.552966e-02	ci right 6.649437e-02	k: 67331	n:1020000
KS ci ratio: 1.415821e-01	ci left: 6.978055e-04	ci right 8.050623e-04	k: 765	n:1020000
SLC15A3   1020000 perm   668 sec   (1526 perm/sec)   p_kst 7.500000e-04   p_cons 6.601078e-02   p_joint 3.274510e-04

Joint ci ratio: 2.128700e-01	ci left: 2.941047e-04	ci right 3.650655e-04	k: 338	n:1030000
Cons ci ratio: 1.452702e-02	ci left: 6.554641e-02	ci right 6.650652e-02	k: 68006	n:1030000
KS ci ratio: 1.409396e-01	ci left: 6.975866e-04	ci right 8.042824e-04	k: 772	n:1030000
SLC15A3   1030000 perm   679 sec   (1516 perm/sec)   p_kst 7.495146e-04   p_cons 6.602524e-02   p_joint 3.281553e-04

Joint ci ratio: 2.113172e-01	ci left: 2.958291e-04	ci right 3.666179e-04	k: 343	n:1040000
Cons ci ratio: 1.445974e-02	ci left: 6.552547e-02	ci right 6.648079e-02	k: 68642	n:1040000
KS ci ratio: 1.402159e-01	ci left: 6.983008e-04	ci right 8.045115e-04	k: 780	n:1040000
SLC15A3   1040000 perm   692 sec   (1504 perm/sec)   p_kst 7.500000e-04   p_cons 6.600192e-02   p_joint 3.298077e-04

Joint ci ratio: 2.104018e-01	ci left: 2.957180e-04	ci right 3.661341e-04	k: 346	n:1050000
Cons ci ratio: 1.438828e-02	ci left: 6.554861e-02	ci right 6.649950e-02	k: 69324	n:1050000
KS ci ratio: 1.396805e-01	ci left: 6.971645e-04	ci right 8.027638e-04	k: 786	n:1050000
SLC15A3   1050000 perm   703 sec   (1494 perm/sec)   p_kst 7.485714e-04   p_cons 6.602286e-02   p_joint 3.295238e-04

Joint ci ratio: 2.091994e-01	ci left: 2.965035e-04	ci right 3.666515e-04	k: 350	n:1060000
Cons ci ratio: 1.432203e-02	ci left: 6.553559e-02	ci right 6.648188e-02	k: 69968	n:1060000
KS ci ratio: 1.391511e-01	ci left: 6.960504e-04	ci right 8.010483e-04	k: 792	n:1060000
SLC15A3   1060000 perm   714 sec   (1484 perm/sec)   p_kst 7.471698e-04   p_cons 6.600755e-02   p_joint 3.301887e-04

Joint ci ratio: 2.083111e-01	ci left: 2.963896e-04	ci right 3.661750e-04	k: 353	n:1070000
Cons ci ratio: 1.425949e-02	ci left: 6.549860e-02	ci right 6.644020e-02	k: 70586	n:1070000
KS ci ratio: 1.386278e-01	ci left: 6.949579e-04	ci right 7.993641e-04	k: 798	n:1070000
SLC15A3   1070000 perm   726 sec   (1475 perm/sec)   p_kst 7.457944e-04   p_cons 6.596822e-02   p_joint 3.299065e-04

Joint ci ratio: 2.074340e-01	ci left: 2.962785e-04	ci right 3.657066e-04	k: 356	n:1080000
Cons ci ratio: 1.419287e-02	ci left: 6.550476e-02	ci right 6.644201e-02	k: 71250	n:1080000
KS ci ratio: 1.381103e-01	ci left: 6.938863e-04	ci right 7.977103e-04	k: 804	n:1080000
SLC15A3   1080000 perm   737 sec   (1466 perm/sec)   p_kst 7.444444e-04   p_cons 6.597222e-02   p_joint 3.296296e-04

Joint ci ratio: 2.071443e-01	ci left: 2.944301e-04	ci right 3.633166e-04	k: 357	n:1090000
Cons ci ratio: 1.412432e-02	ci left: 6.553551e-02	ci right 6.646863e-02	k: 71941	n:1090000
KS ci ratio: 1.376835e-01	ci left: 6.919492e-04	ci right 7.951373e-04	k: 809	n:1090000
SLC15A3   1090000 perm   748 sec   (1457 perm/sec)   p_kst 7.422018e-04   p_cons 6.600092e-02   p_joint 3.275229e-04

Joint ci ratio: 2.059966e-01	ci left: 2.952017e-04	ci right 3.638379e-04	k: 361	n:1100000
Cons ci ratio: 1.406101e-02	ci left: 6.552856e-02	ci right 6.645737e-02	k: 72591	n:1100000
KS ci ratio: 1.372607e-01	ci left: 6.900478e-04	ci right 7.926105e-04	k: 814	n:1100000
SLC15A3   1100000 perm   760 sec   (1447 perm/sec)   p_kst 7.400000e-04   p_cons 6.599182e-02   p_joint 3.281818e-04

Joint ci ratio: 2.059969e-01	ci left: 2.925422e-04	ci right 3.605601e-04	k: 361	n:1110000
Cons ci ratio: 1.399599e-02	ci left: 6.554419e-02	ci right 6.646889e-02	k: 73266	n:1110000
KS ci ratio: 1.369253e-01	ci left: 6.873111e-04	ci right 7.891971e-04	k: 818	n:1110000
SLC15A3   1110000 perm   772 sec   (1437 perm/sec)   p_kst 7.369369e-04   p_cons 6.600541e-02   p_joint 3.252252e-04

Joint ci ratio: 2.048681e-01	ci left: 2.933180e-04	ci right 3.610957e-04	k: 365	n:1120000
Cons ci ratio: 1.393085e-02	ci left: 6.556845e-02	ci right 6.648915e-02	k: 73951	n:1120000
KS ci ratio: 1.359328e-01	ci left: 6.915231e-04	ci right 7.932303e-04	k: 830	n:1120000
SLC15A3   1120000 perm   785 sec   (1427 perm/sec)   p_kst 7.410714e-04   p_cons 6.602768e-02   p_joint 3.258929e-04

Joint ci ratio: 2.040336e-01	ci left: 2.932412e-04	ci right 3.606908e-04	k: 368	n:1130000
Cons ci ratio: 1.386811e-02	ci left: 6.557906e-02	ci right 6.649573e-02	k: 74621	n:1130000
KS ci ratio: 1.356070e-01	ci left: 6.888230e-04	ci right 7.898706e-04	k: 834	n:1130000
SLC15A3   1130000 perm   797 sec   (1417 perm/sec)   p_kst 7.380531e-04   p_cons 6.603628e-02   p_joint 3.256637e-04

Joint ci ratio: 2.034831e-01	ci left: 2.923337e-04	ci right 3.593706e-04	k: 370	n:1140000
Cons ci ratio: 1.381082e-02	ci left: 6.554840e-02	ci right 6.646083e-02	k: 75244	n:1140000
KS ci ratio: 1.349620e-01	ci left: 6.895607e-04	ci right 7.901968e-04	k: 842	n:1140000
SLC15A3   1140000 perm   809 sec   (1408 perm/sec)   p_kst 7.385965e-04   p_cons 6.600351e-02   p_joint 3.245614e-04

Joint ci ratio: 2.021254e-01	ci left: 2.939188e-04	ci right 3.608139e-04	k: 375	n:1150000
Cons ci ratio: 1.374754e-02	ci left: 6.557808e-02	ci right 6.648671e-02	k: 75936	n:1150000
KS ci ratio: 1.340898e-01	ci left: 6.928079e-04	ci right 7.932124e-04	k: 853	n:1150000
SLC15A3   1150000 perm   822 sec   (1400 perm/sec)   p_kst 7.417391e-04   p_cons 6.603130e-02   p_joint 3.260870e-04

Joint ci ratio: 2.015901e-01	ci left: 2.930220e-04	ci right 3.595146e-04	k: 377	n:1160000
Cons ci ratio: 1.368838e-02	ci left: 6.557805e-02	ci right 6.648274e-02	k: 76594	n:1160000
KS ci ratio: 1.338551e-01	ci left: 6.893349e-04	ci right 7.890473e-04	k: 856	n:1160000
SLC15A3   1160000 perm   834 sec   (1391 perm/sec)   p_kst 7.379310e-04   p_cons 6.602931e-02   p_joint 3.250000e-04

Joint ci ratio: 1.994897e-01	ci left: 2.970119e-04	ci right 3.636223e-04	k: 385	n:1170000
Cons ci ratio: 1.362884e-02	ci left: 6.558825e-02	ci right 6.648911e-02	k: 77264	n:1170000
KS ci ratio: 1.332347e-01	ci left: 6.900523e-04	ci right 7.893692e-04	k: 864	n:1170000
SLC15A3   1170000 perm   847 sec   (1381 perm/sec)   p_kst 7.384615e-04   p_cons 6.603761e-02   p_joint 3.290598e-04

Joint ci ratio: 1.987190e-01	ci left: 2.969105e-04	ci right 3.632097e-04	k: 388	n:1180000
Cons ci ratio: 1.356840e-02	ci left: 6.561349e-02	ci right 6.651067e-02	k: 77952	n:1180000
KS ci ratio: 1.328514e-01	ci left: 6.883006e-04	ci right 7.870579e-04	k: 869	n:1180000
SLC15A3   1180000 perm   860 sec   (1372 perm/sec)   p_kst 7.364407e-04   p_cons 6.606102e-02   p_joint 3.288136e-04

Joint ci ratio: 1.977051e-01	ci left: 2.976099e-04	ci right 3.636854e-04	k: 392	n:1190000
Cons ci ratio: 1.351206e-02	ci left: 6.560816e-02	ci right 6.650152e-02	k: 78604	n:1190000
KS ci ratio: 1.326992e-01	ci left: 6.841413e-04	ci right 7.821806e-04	k: 871	n:1190000
SLC15A3   1190000 perm   873 sec   (1363 perm/sec)   p_kst 7.319328e-04   p_cons 6.605378e-02   p_joint 3.294118e-04

Joint ci ratio: 1.964592e-01	ci left: 2.990910e-04	ci right 3.650267e-04	k: 397	n:1200000
Cons ci ratio: 1.345651e-02	ci left: 6.560210e-02	ci right 6.649167e-02	k: 79255	n:1200000
KS ci ratio: 1.318699e-01	ci left: 6.873035e-04	ci right 7.851322e-04	k: 882	n:1200000
SLC15A3   1200000 perm   887 sec   (1353 perm/sec)   p_kst 7.350000e-04   p_cons 6.604583e-02   p_joint 3.308333e-04

Joint ci ratio: 1.952365e-01	ci left: 3.005488e-04	ci right 3.663445e-04	k: 402	n:1210000
Cons ci ratio: 1.340182e-02	ci left: 6.559449e-02	ci right 6.648032e-02	k: 79904	n:1210000
KS ci ratio: 1.314242e-01	ci left: 6.864187e-04	ci right 7.837654e-04	k: 888	n:1210000
SLC15A3   1210000 perm   900 sec   (1345 perm/sec)   p_kst 7.338843e-04   p_cons 6.603636e-02   p_joint 3.322314e-04

Joint ci ratio: 1.947540e-01	ci left: 2.996446e-04	ci right 3.650610e-04	k: 404	n:1220000
Cons ci ratio: 1.334717e-02	ci left: 6.559274e-02	ci right 6.647490e-02	k: 80560	n:1220000
KS ci ratio: 1.308368e-01	ci left: 6.871346e-04	ci right 7.841134e-04	k: 896	n:1220000
SLC15A3   1220000 perm   913 sec   (1336 perm/sec)   p_kst 7.344262e-04   p_cons 6.603279e-02   p_joint 3.311475e-04

Joint ci ratio: 1.942750e-01	ci left: 2.987552e-04	ci right 3.637981e-04	k: 406	n:1230000
Cons ci ratio: 1.329300e-02	ci left: 6.559264e-02	ci right 6.647119e-02	k: 81218	n:1230000
KS ci ratio: 1.297560e-01	ci left: 6.933459e-04	ci right 7.903308e-04	k: 911	n:1230000
SLC15A3   1230000 perm   926 sec   (1328 perm/sec)   p_kst 7.406504e-04   p_cons 6.603089e-02   p_joint 3.300813e-04

Joint ci ratio: 1.933272e-01	ci left: 2.994152e-04	ci right 3.642464e-04	k: 410	n:1240000
Cons ci ratio: 1.324002e-02	ci left: 6.558773e-02	ci right 6.646269e-02	k: 81870	n:1240000
KS ci ratio: 1.291204e-01	ci left: 6.947775e-04	ci right 7.914500e-04	k: 920	n:1240000
SLC15A3   1240000 perm   940 sec   (1320 perm/sec)   p_kst 7.419355e-04   p_cons 6.602419e-02   p_joint 3.306452e-04

Joint ci ratio: 1.926255e-01	ci left: 2.993040e-04	ci right 3.638482e-04	k: 413	n:1250000
Cons ci ratio: 1.319108e-02	ci left: 6.555100e-02	ci right 6.642221e-02	k: 82482	n:1250000
KS ci ratio: 1.288411e-01	ci left: 6.923160e-04	ci right 7.884217e-04	k: 924	n:1250000
SLC15A3   1250000 perm   952 sec   (1312 perm/sec)   p_kst 7.392000e-04   p_cons 6.598560e-02   p_joint 3.304000e-04

Joint ci ratio: 1.919314e-01	ci left: 2.991949e-04	ci right 3.634560e-04	k: 416	n:1260000
Cons ci ratio: 1.313743e-02	ci left: 6.556392e-02	ci right 6.643173e-02	k: 83156	n:1260000
KS ci ratio: 1.281501e-01	ci left: 6.945028e-04	ci right 7.903558e-04	k: 934	n:1260000
SLC15A3   1260000 perm   966 sec   (1305 perm/sec)   p_kst 7.412698e-04   p_cons 6.599683e-02   p_joint 3.301587e-04

Joint ci ratio: 1.917018e-01	ci left: 2.975886e-04	ci right 3.614193e-04	k: 417	n:1270000
Cons ci ratio: 1.308394e-02	ci left: 6.558135e-02	ci right 6.644583e-02	k: 83836	n:1270000
KS ci ratio: 1.279452e-01	ci left: 6.913208e-04	ci right 7.865705e-04	k: 937	n:1270000
SLC15A3   1270000 perm   979 sec   (1297 perm/sec)   p_kst 7.377953e-04   p_cons 6.601260e-02   p_joint 3.283465e-04

Joint ci ratio: 1.912450e-01	ci left: 2.967512e-04	ci right 3.602331e-04	k: 419	n:1280000
Cons ci ratio: 1.303530e-02	ci left: 6.555879e-02	ci right 6.641974e-02	k: 84465	n:1280000
KS ci ratio: 1.275380e-01	ci left: 6.904575e-04	ci right 7.852626e-04	k: 943	n:1280000
SLC15A3   1280000 perm   992 sec   (1290 perm/sec)   p_kst 7.367187e-04   p_cons 6.598828e-02   p_joint 3.273437e-04

Joint ci ratio: 1.898932e-01	ci left: 2.988801e-04	ci right 3.623133e-04	k: 425	n:1290000
Cons ci ratio: 1.298173e-02	ci left: 6.558837e-02	ci right 6.644614e-02	k: 85161	n:1290000
KS ci ratio: 1.269343e-01	ci left: 6.918598e-04	ci right 7.863740e-04	k: 952	n:1290000
SLC15A3   1290000 perm   1006 sec   (1283 perm/sec)   p_kst 7.379845e-04   p_cons 6.601628e-02   p_joint 3.294574e-04

Joint ci ratio: 1.894491e-01	ci left: 2.980465e-04	ci right 3.611377e-04	k: 427	n:1300000
Cons ci ratio: 1.293042e-02	ci left: 6.560216e-02	ci right 6.645670e-02	k: 85837	n:1300000
KS ci ratio: 1.264707e-01	ci left: 6.917518e-04	ci right 7.858801e-04	k: 959	n:1300000
SLC15A3   1300000 perm   1019 sec   (1275 perm/sec)   p_kst 7.376923e-04   p_cons 6.602846e-02   p_joint 3.284615e-04

Joint ci ratio: 1.890081e-01	ci left: 2.972257e-04	ci right 3.599799e-04	k: 429	n:1310000
Cons ci ratio: 1.287765e-02	ci left: 6.563554e-02	ci right 6.648699e-02	k: 86539	n:1310000
KS ci ratio: 1.262737e-01	ci left: 6.886889e-04	ci right 7.822436e-04	k: 962	n:1310000
SLC15A3   1310000 perm   1033 sec   (1268 perm/sec)   p_kst 7.343511e-04   p_cons 6.606031e-02   p_joint 3.274809e-04

Joint ci ratio: 1.874879e-01	ci left: 3.000271e-04	ci right 3.628054e-04	k: 436	n:1320000
Cons ci ratio: 1.282907e-02	ci left: 6.563443e-02	ci right 6.648263e-02	k: 87196	n:1320000
KS ci ratio: 1.257525e-01	ci left: 6.893411e-04	ci right 7.825690e-04	k: 970	n:1320000
SLC15A3   1320000 perm   1049 sec   (1259 perm/sec)   p_kst 7.348485e-04   p_cons 6.605758e-02   p_joint 3.303030e-04

Joint ci ratio: 1.866356e-01	ci left: 3.006380e-04	ci right 3.632257e-04	k: 440	n:1330000
Cons ci ratio: 1.277939e-02	ci left: 6.564908e-02	ci right 6.649416e-02	k: 87874	n:1330000
KS ci ratio: 1.251098e-01	ci left: 6.914410e-04	ci right 7.844396e-04	k: 980	n:1330000
SLC15A3   1330000 perm   1065 sec   (1249 perm/sec)   p_kst 7.368421e-04   p_cons 6.607068e-02   p_joint 3.308271e-04

Joint ci ratio: 1.853786e-01	ci left: 3.026636e-04	ci right 3.652009e-04	k: 446	n:1340000
Cons ci ratio: 1.273175e-02	ci left: 6.564938e-02	ci right 6.649130e-02	k: 88533	n:1340000
KS ci ratio: 1.244140e-01	ci left: 6.942338e-04	ci right 7.870505e-04	k: 991	n:1340000
SLC15A3   1340000 perm   1081 sec   (1239 perm/sec)   p_kst 7.395522e-04   p_cons 6.606940e-02   p_joint 3.328358e-04

Joint ci ratio: 1.845547e-01	ci left: 3.032474e-04	ci right 3.655957e-04	k: 450	n:1350000
Cons ci ratio: 1.268387e-02	ci left: 6.565707e-02	ci right 6.649590e-02	k: 89202	n:1350000
KS ci ratio: 1.238534e-01	ci left: 6.955510e-04	ci right 7.880940e-04	k: 1000	n:1350000
SLC15A3   1350000 perm   1096 sec   (1231 perm/sec)   p_kst 7.407407e-04   p_cons 6.607556e-02   p_joint 3.333333e-04

Joint ci ratio: 1.839439e-01	ci left: 3.031218e-04	ci right 3.652150e-04	k: 453	n:1360000
Cons ci ratio: 1.263789e-02	ci left: 6.565146e-02	ci right 6.648715e-02	k: 89853	n:1360000
KS ci ratio: 1.234839e-01	ci left: 6.947120e-04	ci right 7.868474e-04	k: 1006	n:1360000
SLC15A3   1360000 perm   1110 sec   (1225 perm/sec)   p_kst 7.397059e-04   p_cons 6.606838e-02   p_joint 3.330882e-04

Joint ci ratio: 1.837418e-01	ci left: 3.016055e-04	ci right 3.633127e-04	k: 454	n:1370000
Cons ci ratio: 1.259151e-02	ci left: 6.565467e-02	ci right 6.648731e-02	k: 90516	n:1370000
KS ci ratio: 1.229963e-01	ci left: 6.953005e-04	ci right 7.871233e-04	k: 1014	n:1370000
SLC15A3   1370000 perm   1124 sec   (1218 perm/sec)   p_kst 7.401460e-04   p_cons 6.607007e-02   p_joint 3.313869e-04

Joint ci ratio: 1.829394e-01	ci left: 3.021855e-04	ci right 3.637115e-04	k: 458	n:1380000
Cons ci ratio: 1.254520e-02	ci left: 6.566217e-02	ci right 6.649182e-02	k: 91185	n:1380000
KS ci ratio: 1.225743e-01	ci left: 6.951787e-04	ci right 7.866477e-04	k: 1021	n:1380000
SLC15A3   1380000 perm   1138 sec   (1212 perm/sec)   p_kst 7.398551e-04   p_cons 6.607609e-02   p_joint 3.318841e-04

Joint ci ratio: 1.823445e-01	ci left: 3.020711e-04	ci right 3.633517e-04	k: 461	n:1390000
Cons ci ratio: 1.249997e-02	ci left: 6.566383e-02	ci right 6.649049e-02	k: 91846	n:1390000
KS ci ratio: 1.223353e-01	ci left: 6.929670e-04	ci right 7.839543e-04	k: 1025	n:1390000
SLC15A3   1390000 perm   1153 sec   (1205 perm/sec)   p_kst 7.374101e-04   p_cons 6.607626e-02   p_joint 3.316547e-04

Joint ci ratio: 1.802113e-01	ci left: 3.074142e-04	ci right 3.689695e-04	k: 472	n:1400000
Cons ci ratio: 1.245545e-02	ci left: 6.566334e-02	ci right 6.648703e-02	k: 92504	n:1400000
KS ci ratio: 1.216846e-01	ci left: 6.956346e-04	ci right 7.864513e-04	k: 1036	n:1400000
SLC15A3   1400000 perm   1169 sec   (1198 perm/sec)   p_kst 7.400000e-04   p_cons 6.607429e-02   p_joint 3.371429e-04

Joint ci ratio: 1.974591e-01	ci left: 2.518479e-04	ci right 3.076853e-04	k: 393	n:1410000
Cons ci ratio: 1.240947e-02	ci left: 6.568195e-02	ci right 6.650281e-02	k: 93189	n:1410000
KS ci ratio: 1.207562e-01	ci left: 7.017046e-04	ci right 7.925649e-04	k: 1052	n:1410000
SLC15A3   1410000 perm   1183 sec   (1192 perm/sec)   p_kst 7.460993e-04   p_cons 6.609149e-02   p_joint 2.787234e-04

Joint ci ratio: 1.964642e-01	ci left: 2.527523e-04	ci right 3.084741e-04	k: 397	n:1420000
Cons ci ratio: 1.236710e-02	ci left: 6.566941e-02	ci right 6.648729e-02	k: 93830	n:1420000
KS ci ratio: 1.200738e-01	ci left: 7.049592e-04	ci right 7.956885e-04	k: 1064	n:1420000
SLC15A3   1420000 perm   1199 sec   (1184 perm/sec)   p_kst 7.492958e-04   p_cons 6.607746e-02   p_joint 2.795775e-04

Joint ci ratio: 1.779678e-01	ci left: 3.089804e-04	ci right 3.699962e-04	k: 484	n:1430000
Cons ci ratio: 1.232433e-02	ci left: 6.566542e-02	ci right 6.648040e-02	k: 94483	n:1430000
KS ci ratio: 1.195696e-01	ci left: 7.061346e-04	ci right 7.966065e-04	k: 1073	n:1430000
SLC15A3   1430000 perm   1214 sec   (1178 perm/sec)   p_kst 7.503497e-04   p_cons 6.607203e-02   p_joint 3.384615e-04

Joint ci ratio: 1.774199e-01	ci left: 3.088254e-04	ci right 3.696027e-04	k: 487	n:1440000
Cons ci ratio: 1.228151e-02	ci left: 6.566633e-02	ci right 6.647847e-02	k: 95143	n:1440000
KS ci ratio: 1.188522e-01	ci left: 7.099895e-04	ci right 8.003713e-04	k: 1086	n:1440000
SLC15A3   1440000 perm   1229 sec   (1172 perm/sec)   p_kst 7.541667e-04   p_cons 6.607153e-02   p_joint 3.381944e-04

Joint ci ratio: 1.952419e-01	ci left: 2.508021e-04	ci right 3.057090e-04	k: 402	n:1450000
Cons ci ratio: 1.223709e-02	ci left: 6.568787e-02	ci right 6.649732e-02	k: 95833	n:1450000
KS ci ratio: 1.186343e-01	ci left: 7.077697e-04	ci right 7.976920e-04	k: 1090	n:1450000
SLC15A3   1450000 perm   1244 sec   (1165 perm/sec)   p_kst 7.517241e-04   p_cons 6.609172e-02   p_joint 2.772414e-04

Joint ci ratio: 1.947593e-01	ci left: 2.503873e-04	ci right 3.050518e-04	k: 404	n:1460000
Cons ci ratio: 1.219361e-02	ci left: 6.570433e-02	ci right 6.651109e-02	k: 96516	n:1460000
KS ci ratio: 1.181479e-01	ci left: 7.089038e-04	ci right 7.985752e-04	k: 1099	n:1460000
SLC15A3   1460000 perm   1260 sec   (1158 perm/sec)   p_kst 7.527397e-04   p_cons 6.610685e-02   p_joint 2.767123e-04

Joint ci ratio: 1.935679e-01	ci left: 2.519200e-04	ci right 3.065431e-04	k: 409	n:1470000
Cons ci ratio: 1.215341e-02	ci left: 6.569209e-02	ci right 6.649602e-02	k: 97157	n:1470000
KS ci ratio: 1.178270e-01	ci left: 7.080425e-04	ci right 7.973448e-04	k: 1105	n:1470000
SLC15A3   1470000 perm   1276 sec   (1152 perm/sec)   p_kst 7.517007e-04   p_cons 6.609320e-02   p_joint 2.782313e-04

Joint ci ratio: 1.930976e-01	ci left: 2.515038e-04	ci right 3.058886e-04	k: 411	n:1480000
Cons ci ratio: 1.211341e-02	ci left: 6.568204e-02	ci right 6.648318e-02	k: 97801	n:1480000
KS ci ratio: 1.173505e-01	ci left: 7.091606e-04	ci right 7.982172e-04	k: 1114	n:1480000
SLC15A3   1480000 perm   1292 sec   (1146 perm/sec)   p_kst 7.527027e-04   p_cons 6.608176e-02   p_joint 2.777027e-04

Joint ci ratio: 1.926307e-01	ci left: 2.510933e-04	ci right 3.052426e-04	k: 413	n:1490000
Cons ci ratio: 1.207058e-02	ci left: 6.570492e-02	ci right 6.650348e-02	k: 98494	n:1490000
KS ci ratio: 1.169839e-01	ci left: 7.089615e-04	ci right 7.976956e-04	k: 1121	n:1490000
SLC15A3   1490000 perm   1308 sec   (1140 perm/sec)   p_kst 7.523490e-04   p_cons 6.610336e-02   p_joint 2.771812e-04

Joint ci ratio: 1.923985e-01	ci left: 2.500539e-04	ci right 3.039065e-04	k: 414	n:1500000
Cons ci ratio: 1.202937e-02	ci left: 6.571553e-02	ci right 6.651148e-02	k: 99169	n:1500000
KS ci ratio: 1.165690e-01	ci left: 7.094126e-04	ci right 7.978667e-04	k: 1129	n:1500000
SLC15A3   1500000 perm   1324 sec   (1133 perm/sec)   p_kst 7.526667e-04   p_cons 6.611267e-02   p_joint 2.760000e-04

Joint ci ratio: 1.917069e-01	ci left: 2.502891e-04	ci right 3.039760e-04	k: 417	n:1510000
Cons ci ratio: 1.198929e-02	ci left: 6.571874e-02	ci right 6.651206e-02	k: 99833	n:1510000
KS ci ratio: 1.161075e-01	ci left: 7.105014e-04	ci right 7.987164e-04	k: 1138	n:1510000
SLC15A3   1510000 perm   1339 sec   (1128 perm/sec)   p_kst 7.536424e-04   p_cons 6.611457e-02   p_joint 2.761589e-04

Joint ci ratio: 1.907961e-01	ci left: 2.511481e-04	ci right 3.047336e-04	k: 421	n:1520000
Cons ci ratio: 1.194935e-02	ci left: 6.572454e-02	ci right 6.651527e-02	k: 100501	n:1520000
KS ci ratio: 1.156010e-01	ci left: 7.122154e-04	ci right 8.002312e-04	k: 1148	n:1520000
SLC15A3   1520000 perm   1354 sec   (1122 perm/sec)   p_kst 7.552632e-04   p_cons 6.611908e-02   p_joint 2.769737e-04

Joint ci ratio: 1.730432e-01	ci left: 3.062825e-04	ci right 3.649171e-04	k: 512	n:1530000
Cons ci ratio: 1.191031e-02	ci left: 6.572506e-02	ci right 6.651319e-02	k: 101161	n:1530000
KS ci ratio: 1.152007e-01	ci left: 7.126382e-04	ci right 8.003805e-04	k: 1156	n:1530000
SLC15A3   1530000 perm   1370 sec   (1117 perm/sec)   p_kst 7.555556e-04   p_cons 6.611830e-02   p_joint 3.346405e-04

Joint ci ratio: 1.722059e-01	ci left: 3.074001e-04	ci right 3.659344e-04	k: 517	n:1540000
Cons ci ratio: 1.187078e-02	ci left: 6.573463e-02	ci right 6.652025e-02	k: 101835	n:1540000
KS ci ratio: 1.145097e-01	ci left: 7.168405e-04	ci right 8.045351e-04	k: 1170	n:1540000
SLC15A3   1540000 perm   1385 sec   (1112 perm/sec)   p_kst 7.597403e-04   p_cons 6.612662e-02   p_joint 3.357143e-04

Joint ci ratio: 1.715448e-01	ci left: 3.078865e-04	ci right 3.662651e-04	k: 521	n:1550000
Cons ci ratio: 1.183281e-02	ci left: 6.573187e-02	ci right 6.651492e-02	k: 102490	n:1550000
KS ci ratio: 1.141690e-01	ci left: 7.166027e-04	ci right 8.039898e-04	k: 1177	n:1550000
SLC15A3   1550000 perm   1401 sec   (1106 perm/sec)   p_kst 7.593548e-04   p_cons 6.612258e-02   p_joint 3.361290e-04

Joint ci ratio: 1.713808e-01	ci left: 3.065264e-04	ci right 3.645858e-04	k: 522	n:1560000
Cons ci ratio: 1.179618e-02	ci left: 6.571891e-02	ci right 6.649937e-02	k: 103129	n:1560000
KS ci ratio: 1.138794e-01	ci left: 7.157455e-04	ci right 8.027918e-04	k: 1183	n:1560000
SLC15A3   1560000 perm   1418 sec   (1100 perm/sec)   p_kst 7.583333e-04   p_cons 6.610833e-02   p_joint 3.346154e-04

Joint ci ratio: 1.710542e-01	ci left: 3.057933e-04	ci right 3.635920e-04	k: 524	n:1570000
Cons ci ratio: 1.175978e-02	ci left: 6.570739e-02	ci right 6.648529e-02	k: 103770	n:1570000
KS ci ratio: 1.134966e-01	ci left: 7.161373e-04	ci right 8.029189e-04	k: 1191	n:1570000
SLC15A3   1570000 perm   1435 sec   (1094 perm/sec)   p_kst 7.585987e-04   p_cons 6.609554e-02   p_joint 3.337580e-04

Joint ci ratio: 1.708916e-01	ci left: 3.044637e-04	ci right 3.619508e-04	k: 525	n:1580000
Cons ci ratio: 1.172352e-02	ci left: 6.569792e-02	ci right 6.647329e-02	k: 104414	n:1580000
KS ci ratio: 1.130234e-01	ci left: 7.177546e-04	ci right 8.043454e-04	k: 1201	n:1580000
SLC15A3   1580000 perm   1452 sec   (1088 perm/sec)   p_kst 7.601266e-04   p_cons 6.608481e-02   p_joint 3.322785e-04

Joint ci ratio: 1.699251e-01	ci left: 3.061615e-04	ci right 3.636087e-04	k: 531	n:1590000
Cons ci ratio: 1.168433e-02	ci left: 6.572307e-02	ci right 6.649612e-02	k: 105113	n:1590000
KS ci ratio: 1.127424e-01	ci left: 7.169075e-04	ci right 8.031667e-04	k: 1207	n:1590000
SLC15A3   1590000 perm   1468 sec   (1083 perm/sec)   p_kst 7.591195e-04   p_cons 6.610881e-02   p_joint 3.339623e-04

Joint ci ratio: 1.696066e-01	ci left: 3.054449e-04	ci right 3.626392e-04	k: 533	n:1600000
Cons ci ratio: 1.164800e-02	ci left: 6.572173e-02	ci right 6.649235e-02	k: 105770	n:1600000
KS ci ratio: 1.122786e-01	ci left: 7.185009e-04	ci right 8.045727e-04	k: 1217	n:1600000
SLC15A3   1600000 perm   1484 sec   (1078 perm/sec)   p_kst 7.606250e-04   p_cons 6.610625e-02   p_joint 3.331250e-04

Joint ci ratio: 1.691322e-01	ci left: 3.053321e-04	ci right 3.623291e-04	k: 536	n:1610000
Cons ci ratio: 1.161043e-02	ci left: 6.573713e-02	ci right 6.650543e-02	k: 106454	n:1610000
KS ci ratio: 1.118660e-01	ci left: 7.194716e-04	ci right 8.053220e-04	k: 1226	n:1610000
SLC15A3   1610000 perm   1500 sec   (1073 perm/sec)   p_kst 7.614907e-04   p_cons 6.612050e-02   p_joint 3.329193e-04

Joint ci ratio: 1.688182e-01	ci left: 3.046297e-04	ci right 3.613792e-04	k: 538	n:1620000
Cons ci ratio: 1.157397e-02	ci left: 6.574434e-02	ci right 6.651030e-02	k: 107125	n:1620000
KS ci ratio: 1.114579e-01	ci left: 7.204308e-04	ci right 8.060615e-04	k: 1235	n:1620000
SLC15A3   1620000 perm   1517 sec   (1068 perm/sec)   p_kst 7.623457e-04   p_cons 6.612654e-02   p_joint 3.320988e-04

Joint ci ratio: 1.678862e-01	ci left: 3.062867e-04	ci right 3.629981e-04	k: 544	n:1630000
Cons ci ratio: 1.153740e-02	ci left: 6.575637e-02	ci right 6.652002e-02	k: 107804	n:1630000
KS ci ratio: 1.110543e-01	ci left: 7.213788e-04	ci right 8.067914e-04	k: 1244	n:1630000
SLC15A3   1630000 perm   1533 sec   (1063 perm/sec)   p_kst 7.631902e-04   p_cons 6.613742e-02   p_joint 3.337423e-04

Joint ci ratio: 1.674261e-01	ci left: 3.061716e-04	ci right 3.626906e-04	k: 547	n:1640000
Cons ci ratio: 1.150088e-02	ci left: 6.577129e-02	ci right 6.653268e-02	k: 108488	n:1640000
KS ci ratio: 1.106550e-01	ci left: 7.223159e-04	ci right 8.075118e-04	k: 1253	n:1640000
SLC15A3   1640000 perm   1554 sec   (1055 perm/sec)   p_kst 7.640244e-04   p_cons 6.615122e-02   p_joint 3.335366e-04

Joint ci ratio: 1.674262e-01	ci left: 3.043160e-04	ci right 3.604925e-04	k: 547	n:1650000
Cons ci ratio: 1.146331e-02	ci left: 6.580114e-02	ci right 6.656038e-02	k: 109197	n:1650000
KS ci ratio: 1.103913e-01	ci left: 7.214740e-04	ci right 8.063547e-04	k: 1259	n:1650000
SLC15A3   1650000 perm   1572 sec   (1049 perm/sec)   p_kst 7.630303e-04   p_cons 6.618000e-02   p_joint 3.315152e-04

Joint ci ratio: 1.672738e-01	ci left: 3.030599e-04	ci right 3.589485e-04	k: 548	n:1660000
Cons ci ratio: 1.142794e-02	ci left: 6.581082e-02	ci right 6.656781e-02	k: 109873	n:1660000
KS ci ratio: 1.101730e-01	ci left: 7.200567e-04	ci right 8.045923e-04	k: 1264	n:1660000
SLC15A3   1660000 perm   1589 sec   (1045 perm/sec)   p_kst 7.614458e-04   p_cons 6.618855e-02   p_joint 3.301205e-04

Joint ci ratio: 1.666677e-01	ci left: 3.035403e-04	ci right 3.592943e-04	k: 552	n:1670000
Cons ci ratio: 1.139466e-02	ci left: 6.580127e-02	ci right 6.655593e-02	k: 110517	n:1670000
KS ci ratio: 1.099127e-01	ci left: 7.192389e-04	ci right 8.034660e-04	k: 1270	n:1670000
SLC15A3   1670000 perm   1606 sec   (1040 perm/sec)   p_kst 7.604790e-04   p_cons 6.617784e-02   p_joint 3.305389e-04

Joint ci ratio: 1.663672e-01	ci left: 3.028744e-04	ci right 3.583957e-04	k: 554	n:1680000
Cons ci ratio: 1.136101e-02	ci left: 6.579896e-02	ci right 6.655135e-02	k: 111173	n:1680000
KS ci ratio: 1.097403e-01	ci left: 7.172732e-04	ci right 8.011299e-04	k: 1274	n:1680000
SLC15A3   1680000 perm   1623 sec   (1035 perm/sec)   p_kst 7.583333e-04   p_cons 6.617440e-02   p_joint 3.297619e-04

Joint ci ratio: 1.662176e-01	ci left: 3.016493e-04	ci right 3.568914e-04	k: 555	n:1690000
Cons ci ratio: 1.132761e-02	ci left: 6.579727e-02	ci right 6.654742e-02	k: 111830	n:1690000
KS ci ratio: 1.095258e-01	ci left: 7.159064e-04	ci right 7.994292e-04	k: 1279	n:1690000
SLC15A3   1690000 perm   1641 sec   (1030 perm/sec)   p_kst 7.568047e-04   p_cons 6.617160e-02   p_joint 3.284024e-04

Joint ci ratio: 1.654752e-01	ci left: 3.026940e-04	ci right 3.578551e-04	k: 560	n:1700000
Cons ci ratio: 1.129391e-02	ci left: 6.580206e-02	ci right 6.655001e-02	k: 112498	n:1700000
KS ci ratio: 1.092276e-01	ci left: 7.157002e-04	ci right 7.989569e-04	k: 1286	n:1700000
SLC15A3   1700000 perm   1658 sec   (1025 perm/sec)   p_kst 7.564706e-04   p_cons 6.617529e-02   p_joint 3.294118e-04

Joint ci ratio: 1.650345e-01	ci left: 3.026057e-04	ci right 3.575893e-04	k: 563	n:1710000
Cons ci ratio: 1.125997e-02	ci left: 6.581262e-02	ci right 6.655844e-02	k: 113176	n:1710000
KS ci ratio: 1.089739e-01	ci left: 7.149279e-04	ci right 7.978891e-04	k: 1292	n:1710000
SLC15A3   1710000 perm   1676 sec   (1020 perm/sec)   p_kst 7.555556e-04   p_cons 6.618480e-02   p_joint 3.292398e-04

Joint ci ratio: 1.644523e-01	ci left: 3.030761e-04	ci right 3.579317e-04	k: 567	n:1720000
Cons ci ratio: 1.122623e-02	ci left: 6.582423e-02	ci right 6.656793e-02	k: 113856	n:1720000
KS ci ratio: 1.086383e-01	ci left: 7.152959e-04	ci right 7.980279e-04	k: 1300	n:1720000
SLC15A3   1720000 perm   1694 sec   (1016 perm/sec)   p_kst 7.558140e-04   p_cons 6.619535e-02   p_joint 3.296512e-04

Joint ci ratio: 1.641636e-01	ci left: 3.024327e-04	ci right 3.570663e-04	k: 569	n:1730000
Cons ci ratio: 1.119269e-02	ci left: 6.583686e-02	ci right 6.657846e-02	k: 114538	n:1730000
KS ci ratio: 1.085134e-01	ci left: 7.128482e-04	ci right 7.951963e-04	k: 1303	n:1730000
SLC15A3   1730000 perm   1714 sec   (1009 perm/sec)   p_kst 7.531792e-04   p_cons 6.620694e-02   p_joint 3.289017e-04

Joint ci ratio: 1.634482e-01	ci left: 3.034504e-04	ci right 3.580054e-04	k: 574	n:1740000
Cons ci ratio: 1.116121e-02	ci left: 6.582986e-02	ci right 6.656929e-02	k: 115186	n:1740000
KS ci ratio: 1.082647e-01	ci left: 7.121062e-04	ci right 7.941679e-04	k: 1309	n:1740000
SLC15A3   1740000 perm   1732 sec   (1005 perm/sec)   p_kst 7.522989e-04   p_cons 6.619885e-02   p_joint 3.298851e-04

Joint ci ratio: 1.630235e-01	ci left: 3.033606e-04	ci right 3.577439e-04	k: 577	n:1750000
Cons ci ratio: 1.112778e-02	ci left: 6.584745e-02	ci right 6.658484e-02	k: 115877	n:1750000
KS ci ratio: 1.079356e-01	ci left: 7.124848e-04	ci right 7.943248e-04	k: 1317	n:1750000
SLC15A3   1750000 perm   1751 sec   (1000 perm/sec)   p_kst 7.525714e-04   p_cons 6.621543e-02   p_joint 3.297143e-04

Joint ci ratio: 1.626021e-01	ci left: 3.032721e-04	ci right 3.574852e-04	k: 580	n:1760000
Cons ci ratio: 1.109522e-02	ci left: 6.585861e-02	ci right 6.659396e-02	k: 116557	n:1760000
KS ci ratio: 1.076095e-01	ci left: 7.128595e-04	ci right 7.944795e-04	k: 1325	n:1760000
SLC15A3   1760000 perm   1770 sec   (995 perm/sec)   p_kst 7.528409e-04   p_cons 6.622557e-02   p_joint 3.295455e-04

Joint ci ratio: 1.620452e-01	ci left: 3.037268e-04	ci right 3.578171e-04	k: 584	n:1770000
Cons ci ratio: 1.106359e-02	ci left: 6.586232e-02	ci right 6.659560e-02	k: 117224	n:1770000
KS ci ratio: 1.073669e-01	ci left: 7.121308e-04	ci right 7.934719e-04	k: 1331	n:1770000
SLC15A3   1770000 perm   1788 sec   (990 perm/sec)   p_kst 7.519774e-04   p_cons 6.622825e-02   p_joint 3.299435e-04

Joint ci ratio: 1.616313e-01	ci left: 3.036376e-04	ci right 3.575605e-04	k: 587	n:1780000
Cons ci ratio: 1.103063e-02	ci left: 6.588392e-02	ci right 6.661524e-02	k: 117923	n:1780000
KS ci ratio: 1.070459e-01	ci left: 7.125039e-04	ci right 7.936290e-04	k: 1339	n:1780000
SLC15A3   1780000 perm   1806 sec   (986 perm/sec)   p_kst 7.522472e-04   p_cons 6.624888e-02   p_joint 3.297753e-04

Joint ci ratio: 1.609484e-01	ci left: 3.046218e-04	ci right 3.584689e-04	k: 592	n:1790000
Cons ci ratio: 1.099856e-02	ci left: 6.589860e-02	ci right 6.662794e-02	k: 118610	n:1790000
KS ci ratio: 1.067278e-01	ci left: 7.128733e-04	ci right 7.937840e-04	k: 1347	n:1790000
SLC15A3   1790000 perm   1824 sec   (981 perm/sec)   p_kst 7.525140e-04   p_cons 6.626257e-02   p_joint 3.307263e-04

Joint ci ratio: 1.605428e-01	ci left: 3.045291e-04	ci right 3.582111e-04	k: 595	n:1800000
Cons ci ratio: 1.096691e-02	ci left: 6.591146e-02	ci right 6.663883e-02	k: 119294	n:1800000
KS ci ratio: 1.064911e-01	ci left: 7.121573e-04	ci right 7.927963e-04	k: 1353	n:1800000
SLC15A3   1800000 perm   1844 sec   (976 perm/sec)   p_kst 7.516667e-04   p_cons 6.627444e-02   p_joint 3.305556e-04

Joint ci ratio: 1.602742e-01	ci left: 3.039072e-04	ci right 3.573813e-04	k: 597	n:1810000
Cons ci ratio: 1.093588e-02	ci left: 6.592032e-02	ci right 6.664571e-02	k: 119971	n:1810000
KS ci ratio: 1.062951e-01	ci left: 7.109116e-04	ci right 7.912522e-04	k: 1358	n:1810000
SLC15A3   1810000 perm   1863 sec   (972 perm/sec)   p_kst 7.502762e-04   p_cons 6.628232e-02   p_joint 3.298343e-04

Joint ci ratio: 1.594760e-01	ci left: 3.054023e-04	ci right 3.588461e-04	k: 603	n:1820000
Cons ci ratio: 1.090356e-02	ci left: 6.594662e-02	ci right 6.667015e-02	k: 120680	n:1820000
KS ci ratio: 1.059448e-01	ci left: 7.118193e-04	ci right 7.919809e-04	k: 1367	n:1820000
SLC15A3   1820000 perm   1882 sec   (967 perm/sec)   p_kst 7.510989e-04   p_cons 6.630769e-02   p_joint 3.313187e-04

Joint ci ratio: 1.589505e-01	ci left: 3.058321e-04	ci right 3.591580e-04	k: 607	n:1830000
Cons ci ratio: 1.087459e-02	ci left: 6.593775e-02	ci right 6.665925e-02	k: 121325	n:1830000
KS ci ratio: 1.054448e-01	ci left: 7.148457e-04	ci right 7.949446e-04	k: 1380	n:1830000
SLC15A3   1830000 perm   1900 sec   (963 perm/sec)   p_kst 7.540984e-04   p_cons 6.629781e-02   p_joint 3.316940e-04

Joint ci ratio: 1.584302e-01	ci left: 3.062576e-04	ci right 3.594662e-04	k: 611	n:1840000
Cons ci ratio: 1.084519e-02	ci left: 6.593657e-02	ci right 6.665610e-02	k: 121984	n:1840000
KS ci ratio: 1.049895e-01	ci left: 7.173108e-04	ci right 7.973175e-04	k: 1392	n:1840000
SLC15A3   1840000 perm   1921 sec   (958 perm/sec)   p_kst 7.565217e-04   p_cons 6.629565e-02   p_joint 3.320652e-04

Joint ci ratio: 1.579150e-01	ci left: 3.066787e-04	ci right 3.597708e-04	k: 615	n:1850000
Cons ci ratio: 1.081509e-02	ci left: 6.594619e-02	ci right 6.666381e-02	k: 122663	n:1850000
KS ci ratio: 1.046146e-01	ci left: 7.186972e-04	ci right 7.985546e-04	k: 1402	n:1850000
SLC15A3   1850000 perm   1940 sec   (954 perm/sec)   p_kst 7.578378e-04   p_cons 6.630432e-02   p_joint 3.324324e-04

Joint ci ratio: 1.574047e-01	ci left: 3.070956e-04	ci right 3.600719e-04	k: 619	n:1860000
Cons ci ratio: 1.078438e-02	ci left: 6.596537e-02	ci right 6.668114e-02	k: 123360	n:1860000
KS ci ratio: 1.043176e-01	ci left: 7.190220e-04	ci right 7.986747e-04	k: 1410	n:1860000
SLC15A3   1860000 perm   1960 sec   (949 perm/sec)   p_kst 7.580645e-04   p_cons 6.632258e-02   p_joint 3.327957e-04

Joint ci ratio: 1.574048e-01	ci left: 3.054534e-04	ci right 3.581464e-04	k: 619	n:1870000
Cons ci ratio: 1.075719e-02	ci left: 6.594700e-02	ci right 6.666076e-02	k: 123987	n:1870000
KS ci ratio: 1.040231e-01	ci left: 7.193436e-04	ci right 7.987932e-04	k: 1418	n:1870000
SLC15A3   1870000 perm   1979 sec   (945 perm/sec)   p_kst 7.582888e-04   p_cons 6.630321e-02   p_joint 3.310160e-04

Joint ci ratio: 1.568995e-01	ci left: 3.058726e-04	ci right 3.584526e-04	k: 623	n:1880000
Cons ci ratio: 1.072942e-02	ci left: 6.593785e-02	ci right 6.664966e-02	k: 124631	n:1880000
KS ci ratio: 1.037675e-01	ci left: 7.191439e-04	ci right 7.983645e-04	k: 1425	n:1880000
SLC15A3   1880000 perm   2000 sec   (940 perm/sec)   p_kst 7.579787e-04   p_cons 6.629309e-02   p_joint 3.313830e-04

Joint ci ratio: 1.565237e-01	ci left: 3.057793e-04	ci right 3.582055e-04	k: 626	n:1890000
Cons ci ratio: 1.070214e-02	ci left: 6.592563e-02	ci right 6.663549e-02	k: 125269	n:1890000
KS ci ratio: 1.034055e-01	ci left: 7.204929e-04	ci right 7.995683e-04	k: 1435	n:1890000
SLC15A3   1890000 perm   2019 sec   (936 perm/sec)   p_kst 7.592593e-04   p_cons 6.627989e-02   p_joint 3.312169e-04

Joint ci ratio: 1.563991e-01	ci left: 3.046756e-04	ci right 3.568672e-04	k: 627	n:1900000
Cons ci ratio: 1.067402e-02	ci left: 6.592562e-02	ci right 6.663360e-02	k: 125930	n:1900000
KS ci ratio: 1.030829e-01	ci left: 7.213153e-04	ci right 8.002192e-04	k: 1444	n:1900000
SLC15A3   1900000 perm   2038 sec   (932 perm/sec)   p_kst 7.600000e-04   p_cons 6.627895e-02   p_joint 3.300000e-04

Joint ci ratio: 1.560269e-01	ci left: 3.045897e-04	ci right 3.566308e-04	k: 630	n:1910000
Cons ci ratio: 1.064486e-02	ci left: 6.594023e-02	ci right 6.664642e-02	k: 126619	n:1910000
KS ci ratio: 1.027988e-01	ci left: 7.216195e-04	ci right 8.003258e-04	k: 1452	n:1910000
SLC15A3   1910000 perm   2057 sec   (929 perm/sec)   p_kst 7.602094e-04   p_cons 6.629267e-02   p_joint 3.298429e-04

Joint ci ratio: 1.557803e-01	ci left: 3.040043e-04	ci right 3.558556e-04	k: 632	n:1920000
Cons ci ratio: 1.061755e-02	ci left: 6.593599e-02	ci right 6.664032e-02	k: 127272	n:1920000
KS ci ratio: 1.025872e-01	ci left: 7.209058e-04	ci right 7.993627e-04	k: 1458	n:1920000
SLC15A3   1920000 perm   2077 sec   (925 perm/sec)   p_kst 7.593750e-04   p_cons 6.628750e-02   p_joint 3.291667e-04

Joint ci ratio: 1.552904e-01	ci left: 3.044211e-04	ci right 3.561649e-04	k: 636	n:1930000
Cons ci ratio: 1.058934e-02	ci left: 6.594472e-02	ci right 6.664725e-02	k: 127950	n:1930000
KS ci ratio: 1.024470e-01	ci left: 7.191899e-04	ci right 7.973466e-04	k: 1462	n:1930000
SLC15A3   1930000 perm   2097 sec   (920 perm/sec)   p_kst 7.575130e-04   p_cons 6.629534e-02   p_joint 3.295337e-04

Joint ci ratio: 1.549260e-01	ci left: 3.043383e-04	ci right 3.559354e-04	k: 639	n:1940000
Cons ci ratio: 1.056271e-02	ci left: 6.593742e-02	ci right 6.663810e-02	k: 128597	n:1940000
KS ci ratio: 1.021333e-01	ci left: 7.200032e-04	ci right 7.979944e-04	k: 1471	n:1940000
SLC15A3   1940000 perm   2116 sec   (917 perm/sec)   p_kst 7.582474e-04   p_cons 6.628711e-02   p_joint 3.293814e-04

Joint ci ratio: 1.543243e-01	ci left: 3.052425e-04	ci right 3.567733e-04	k: 644	n:1950000
Cons ci ratio: 1.053432e-02	ci left: 6.595322e-02	ci right 6.665217e-02	k: 129289	n:1950000
KS ci ratio: 1.019949e-01	ci left: 7.183098e-04	ci right 7.960058e-04	k: 1475	n:1950000
SLC15A3   1950000 perm   2136 sec   (913 perm/sec)   p_kst 7.564103e-04   p_cons 6.630205e-02   p_joint 3.302564e-04

Joint ci ratio: 1.538479e-01	ci left: 3.056472e-04	ci right 3.570725e-04	k: 648	n:1960000
Cons ci ratio: 1.050923e-02	ci left: 6.593272e-02	ci right 6.662978e-02	k: 129910	n:1960000
KS ci ratio: 1.017882e-01	ci left: 7.176281e-04	ci right 7.950837e-04	k: 1481	n:1960000
SLC15A3   1960000 perm   2155 sec   (910 perm/sec)   p_kst 7.556122e-04   p_cons 6.628061e-02   p_joint 3.306122e-04

Joint ci ratio: 1.532586e-01	ci left: 3.065363e-04	ci right 3.578954e-04	k: 653	n:1970000
Cons ci ratio: 1.048338e-02	ci left: 6.592358e-02	ci right 6.661881e-02	k: 130553	n:1970000
KS ci ratio: 1.013107e-01	ci left: 7.209115e-04	ci right 7.983347e-04	k: 1495	n:1970000
SLC15A3   1970000 perm   2175 sec   (906 perm/sec)   p_kst 7.588832e-04   p_cons 6.627056e-02   p_joint 3.314721e-04

Joint ci ratio: 1.530249e-01	ci left: 3.059595e-04	ci right 3.571367e-04	k: 655	n:1980000
Cons ci ratio: 1.045729e-02	ci left: 6.591956e-02	ci right 6.661302e-02	k: 131206	n:1980000
KS ci ratio: 1.010745e-01	ci left: 7.207164e-04	ci right 7.979275e-04	k: 1502	n:1980000
SLC15A3   1980000 perm   2194 sec   (902 perm/sec)   p_kst 7.585859e-04   p_cons 6.626566e-02   p_joint 3.308081e-04

Joint ci ratio: 1.530250e-01	ci left: 3.044220e-04	ci right 3.553420e-04	k: 655	n:1990000
Cons ci ratio: 1.043096e-02	ci left: 6.592061e-02	ci right 6.661232e-02	k: 131869	n:1990000
KS ci ratio: 1.009404e-01	ci left: 7.190540e-04	ci right 7.959787e-04	k: 1506	n:1990000
SLC15A3   1990000 perm   2215 sec   (899 perm/sec)   p_kst 7.567839e-04   p_cons 6.626583e-02   p_joint 3.291457e-04

Joint ci ratio: 1.526763e-01	ci left: 3.043425e-04	ci right 3.551226e-04	k: 658	n:2000000
Cons ci ratio: 1.040366e-02	ci left: 6.593561e-02	ci right 6.662565e-02	k: 132560	n:2000000
KS ci ratio: 1.007067e-01	ci left: 7.188705e-04	ci right 7.955870e-04	k: 1513	n:2000000
SLC15A3   2000000 perm   2236 sec   (895 perm/sec)   p_kst 7.565000e-04   p_cons 6.628000e-02   p_joint 3.290000e-04

Joint ci ratio: 1.524452e-01	ci left: 3.037854e-04	ci right 3.543889e-04	k: 660	n:2010000
Cons ci ratio: 1.037941e-02	ci left: 6.591671e-02	ci right 6.660494e-02	k: 133183	n:2010000
KS ci ratio: 1.004087e-01	ci left: 7.196590e-04	ci right 7.962191e-04	k: 1522	n:2010000
SLC15A3   2010000 perm   2256 sec   (891 perm/sec)   p_kst 7.572139e-04   p_cons 6.626020e-02   p_joint 3.283582e-04

Joint ci ratio: 1.522152e-01	ci left: 3.032339e-04	ci right 3.536623e-04	k: 662	n:2020000
Cons ci ratio: 1.035405e-02	ci left: 6.591331e-02	ci right 6.659981e-02	k: 133837	n:2020000
KS ci ratio: 1.002772e-01	ci left: 7.180268e-04	ci right 7.943073e-04	k: 1526	n:2020000
SLC15A3   2020000 perm   2275 sec   (888 perm/sec)   p_kst 7.554455e-04   p_cons 6.625594e-02   p_joint 3.277228e-04

Joint ci ratio: 1.518720e-01	ci left: 3.031617e-04	ci right 3.534541e-04	k: 665	n:2030000
Cons ci ratio: 1.032726e-02	ci left: 6.592911e-02	ci right 6.661400e-02	k: 134530	n:2030000
KS ci ratio: 1.001135e-01	ci left: 7.168911e-04	ci right 7.929192e-04	k: 1531	n:2030000
SLC15A3   2030000 perm   2297 sec   (884 perm/sec)   p_kst 7.541872e-04   p_cons 6.627094e-02   p_joint 3.275862e-04

Joint ci ratio: 1.516445e-01	ci left: 3.026188e-04	ci right 3.527391e-04	k: 667	n:2040000
Cons ci ratio: 1.030244e-02	ci left: 6.592374e-02	ci right 6.660691e-02	k: 135180	n:2040000
KS ci ratio: 9.998314e-02	ci left: 7.152886e-04	ci right 7.910422e-04	k: 1535	n:2040000
SLC15A3   2040000 perm   2318 sec   (880 perm/sec)   p_kst 7.524510e-04   p_cons 6.626471e-02   p_joint 3.269608e-04

Joint ci ratio: 1.511925e-01	ci left: 3.030199e-04	ci right 3.530435e-04	k: 671	n:2050000
Cons ci ratio: 1.027787e-02	ci left: 6.591744e-02	ci right 6.659891e-02	k: 135828	n:2050000
KS ci ratio: 9.975611e-02	ci left: 7.151287e-04	ci right 7.906834e-04	k: 1542	n:2050000
SLC15A3   2050000 perm   2338 sec   (877 perm/sec)   p_kst 7.521951e-04   p_cons 6.625756e-02   p_joint 3.273171e-04

Joint ci ratio: 1.508561e-01	ci left: 3.029502e-04	ci right 3.528410e-04	k: 674	n:2060000
Cons ci ratio: 1.025336e-02	ci left: 6.591266e-02	ci right 6.659244e-02	k: 136479	n:2060000
KS ci ratio: 9.962714e-02	ci left: 7.135505e-04	ci right 7.888353e-04	k: 1546	n:2060000
SLC15A3   2060000 perm   2359 sec   (873 perm/sec)   p_kst 7.504854e-04   p_cons 6.625194e-02   p_joint 3.271845e-04

Joint ci ratio: 1.507446e-01	ci left: 3.019515e-04	ci right 3.516378e-04	k: 675	n:2070000
Cons ci ratio: 1.022739e-02	ci left: 6.592769e-02	ci right 6.660589e-02	k: 137171	n:2070000
KS ci ratio: 9.946659e-02	ci left: 7.124587e-04	ci right 7.875001e-04	k: 1551	n:2070000
SLC15A3   2070000 perm   2380 sec   (870 perm/sec)   p_kst 7.492754e-04   p_cons 6.626618e-02   p_joint 3.260870e-04

Joint ci ratio: 1.503005e-01	ci left: 3.023505e-04	ci right 3.519427e-04	k: 679	n:2080000
Cons ci ratio: 1.020288e-02	ci left: 6.592723e-02	ci right 6.660379e-02	k: 137831	n:2080000
KS ci ratio: 9.924305e-02	ci left: 7.123152e-04	ci right 7.871630e-04	k: 1558	n:2080000
SLC15A3   2080000 perm   2402 sec   (866 perm/sec)   p_kst 7.490385e-04   p_cons 6.626490e-02   p_joint 3.264423e-04

Joint ci ratio: 1.495327e-01	ci left: 3.041275e-04	ci right 3.537335e-04	k: 686	n:2090000
Cons ci ratio: 1.017902e-02	ci left: 6.592104e-02	ci right 6.659595e-02	k: 138479	n:2090000
KS ci ratio: 9.883171e-02	ci left: 7.149731e-04	ci right 7.897707e-04	k: 1571	n:2090000
SLC15A3   2090000 perm   2424 sec   (862 perm/sec)   p_kst 7.516746e-04   p_cons 6.625789e-02   p_joint 3.282297e-04

Joint ci ratio: 1.490993e-01	ci left: 3.045129e-04	ci right 3.540249e-04	k: 690	n:2100000
Cons ci ratio: 1.015407e-02	ci left: 6.593012e-02	ci right 6.660346e-02	k: 139159	n:2100000
KS ci ratio: 9.851879e-02	ci left: 7.162128e-04	ci right 7.908893e-04	k: 1581	n:2100000
SLC15A3   2100000 perm   2448 sec   (858 perm/sec)   p_kst 7.528571e-04   p_cons 6.626619e-02   p_joint 3.285714e-04

Joint ci ratio: 1.486695e-01	ci left: 3.048948e-04	ci right 3.543134e-04	k: 694	n:2110000
Cons ci ratio: 1.012884e-02	ci left: 6.594479e-02	ci right 6.661659e-02	k: 139851	n:2110000
KS ci ratio: 9.802414e-02	ci left: 7.202151e-04	ci right 7.949102e-04	k: 1597	n:2110000
SLC15A3   2110000 perm   2469 sec   (854 perm/sec)   p_kst 7.568720e-04   p_cons 6.628009e-02   p_joint 3.289100e-04

Joint ci ratio: 1.483497e-01	ci left: 3.048192e-04	ci right 3.541098e-04	k: 697	n:2120000
Cons ci ratio: 1.010527e-02	ci left: 6.594144e-02	ci right 6.661164e-02	k: 140505	n:2120000
KS ci ratio: 9.774923e-02	ci left: 7.209592e-04	ci right 7.955097e-04	k: 1606	n:2120000
SLC15A3   2120000 perm   2490 sec   (851 perm/sec)   p_kst 7.575472e-04   p_cons 6.627594e-02   p_joint 3.287736e-04

Joint ci ratio: 1.480320e-01	ci left: 3.047443e-04	ci right 3.539079e-04	k: 700	n:2130000
Cons ci ratio: 1.008250e-02	ci left: 6.593016e-02	ci right 6.659872e-02	k: 141142	n:2130000
KS ci ratio: 9.762789e-02	ci left: 7.194065e-04	ci right 7.936988e-04	k: 1610	n:2130000
SLC15A3   2130000 perm   2511 sec   (848 perm/sec)   p_kst 7.558685e-04   p_cons 6.626385e-02   p_joint 3.286385e-04

Joint ci ratio: 1.475068e-01	ci left: 3.055703e-04	ci right 3.546769e-04	k: 705	n:2140000
Cons ci ratio: 1.005921e-02	ci left: 6.592738e-02	ci right 6.659436e-02	k: 141797	n:2140000
KS ci ratio: 9.747680e-02	ci left: 7.183242e-04	ci right 7.923834e-04	k: 1615	n:2140000
SLC15A3   2140000 perm   2532 sec   (845 perm/sec)   p_kst 7.546729e-04   p_cons 6.626028e-02   p_joint 3.294393e-04

Joint ci ratio: 1.472983e-01	ci left: 3.050450e-04	ci right 3.539918e-04	k: 707	n:2150000
Cons ci ratio: 1.003690e-02	ci left: 6.591441e-02	ci right 6.657978e-02	k: 142430	n:2150000
KS ci ratio: 9.738655e-02	ci left: 7.163445e-04	ci right 7.901272e-04	k: 1618	n:2150000
SLC15A3   2150000 perm   2554 sec   (842 perm/sec)   p_kst 7.525581e-04   p_cons 6.624651e-02   p_joint 3.288372e-04

Joint ci ratio: 1.471945e-01	ci left: 3.040787e-04	ci right 3.528329e-04	k: 708	n:2160000
Cons ci ratio: 1.001501e-02	ci left: 6.589834e-02	ci right 6.656208e-02	k: 143056	n:2160000
KS ci ratio: 9.711695e-02	ci left: 7.170934e-04	ci right 7.907372e-04	k: 1627	n:2160000
SLC15A3   2160000 perm   2576 sec   (838 perm/sec)   p_kst 7.532407e-04   p_cons 6.622963e-02   p_joint 3.277778e-04

Joint ci ratio: 1.469874e-01	ci left: 3.035651e-04	ci right 3.521625e-04	k: 710	n:2170000
Cons ci ratio: 9.991918e-03	ci left: 6.589897e-02	ci right 6.656118e-02	k: 143718	n:2170000
KS ci ratio: 9.687920e-02	ci left: 7.173860e-04	ci right 7.908693e-04	k: 1635	n:2170000
SLC15A3   2170000 perm   2600 sec   (835 perm/sec)   p_kst 7.534562e-04   p_cons 6.622949e-02   p_joint 3.271889e-04

Joint ci ratio: 1.468842e-01	ci left: 3.026144e-04	ci right 3.510227e-04	k: 711	n:2180000
Cons ci ratio: 9.970021e-03	ci left: 6.588678e-02	ci right 6.654740e-02	k: 144352	n:2180000
KS ci ratio: 9.664319e-02	ci left: 7.176762e-04	ci right 7.910000e-04	k: 1643	n:2180000
SLC15A3   2180000 perm   2621 sec   (832 perm/sec)   p_kst 7.536697e-04   p_cons 6.621651e-02   p_joint 3.261468e-04

Joint ci ratio: 1.464733e-01	ci left: 3.029921e-04	ci right 3.513133e-04	k: 715	n:2190000
Cons ci ratio: 9.944888e-03	ci left: 6.591661e-02	ci right 6.657586e-02	k: 145078	n:2190000
KS ci ratio: 9.655523e-02	ci left: 7.157359e-04	ci right 7.887911e-04	k: 1646	n:2190000
SLC15A3   2190000 perm   2643 sec   (829 perm/sec)   p_kst 7.515982e-04   p_cons 6.624566e-02   p_joint 3.264840e-04

Joint ci ratio: 1.463712e-01	ci left: 3.020527e-04	ci right 3.501876e-04	k: 716	n:2200000
Cons ci ratio: 9.921111e-03	ci left: 6.593166e-02	ci right 6.658948e-02	k: 145772	n:2200000
KS ci ratio: 9.626338e-02	ci left: 7.169184e-04	ci right 7.898606e-04	k: 1656	n:2200000
SLC15A3   2200000 perm   2664 sec   (826 perm/sec)   p_kst 7.527273e-04   p_cons 6.626000e-02   p_joint 3.254545e-04

Joint ci ratio: 1.456618e-01	ci left: 3.037377e-04	ci right 3.518861e-04	k: 723	n:2210000
Cons ci ratio: 9.899205e-03	ci left: 6.592536e-02	ci right 6.658166e-02	k: 146419	n:2210000
KS ci ratio: 9.597416e-02	ci left: 7.180906e-04	ci right 7.909202e-04	k: 1666	n:2210000
SLC15A3   2210000 perm   2686 sec   (823 perm/sec)   p_kst 7.538462e-04   p_cons 6.625294e-02   p_joint 3.271493e-04

Joint ci ratio: 1.454610e-01	ci left: 3.032376e-04	ci right 3.512347e-04	k: 725	n:2220000
Cons ci ratio: 9.876436e-03	ci left: 6.593170e-02	ci right 6.658654e-02	k: 147094	n:2220000
KS ci ratio: 9.574468e-02	ci left: 7.183731e-04	ci right 7.910475e-04	k: 1674	n:2220000
SLC15A3   2220000 perm   2708 sec   (820 perm/sec)   p_kst 7.540541e-04   p_cons 6.625856e-02   p_joint 3.265766e-04

Joint ci ratio: 1.453610e-01	ci left: 3.023099e-04	ci right 3.501244e-04	k: 726	n:2230000
Cons ci ratio: 9.854287e-03	ci left: 6.593218e-02	ci right 6.658554e-02	k: 147756	n:2230000
KS ci ratio: 9.557369e-02	ci left: 7.177779e-04	ci right 7.902551e-04	k: 1680	n:2230000
SLC15A3   2230000 perm   2730 sec   (817 perm/sec)   p_kst 7.533632e-04   p_cons 6.625830e-02   p_joint 3.255605e-04

Joint ci ratio: 1.452612e-01	ci left: 3.013905e-04	ci right 3.490240e-04	k: 727	n:2240000
Cons ci ratio: 9.833103e-03	ci left: 6.592240e-02	ci right 6.657426e-02	k: 148395	n:2240000
KS ci ratio: 9.531884e-02	ci left: 7.184955e-04	ci right 7.908409e-04	k: 1689	n:2240000
SLC15A3   2240000 perm   2753 sec   (814 perm/sec)   p_kst 7.540179e-04   p_cons 6.624777e-02   p_joint 3.245536e-04

Joint ci ratio: 1.445677e-01	ci left: 3.030493e-04	ci right 3.506966e-04	k: 734	n:2250000
Cons ci ratio: 9.811633e-03	ci left: 6.591803e-02	ci right 6.656842e-02	k: 149046	n:2250000
KS ci ratio: 9.501006e-02	ci left: 7.200748e-04	ci right 7.923312e-04	k: 1700	n:2250000
SLC15A3   2250000 perm   2776 sec   (811 perm/sec)   p_kst 7.555556e-04   p_cons 6.624267e-02   p_joint 3.262222e-04

Joint ci ratio: 1.442736e-01	ci left: 3.029879e-04	ci right 3.505202e-04	k: 737	n:2260000
Cons ci ratio: 9.789461e-03	ci left: 6.592430e-02	ci right 6.657327e-02	k: 149721	n:2260000
KS ci ratio: 9.481518e-02	ci left: 7.199124e-04	ci right 7.919962e-04	k: 1707	n:2260000
SLC15A3   2260000 perm   2798 sec   (808 perm/sec)   p_kst 7.553097e-04   p_cons 6.624823e-02   p_joint 3.261062e-04

Joint ci ratio: 1.439813e-01	ci left: 3.029270e-04	ci right 3.503453e-04	k: 740	n:2270000
Cons ci ratio: 9.769492e-03	ci left: 6.590459e-02	ci right 6.655203e-02	k: 150337	n:2270000
KS ci ratio: 9.473211e-02	ci left: 7.180313e-04	ci right 7.898602e-04	k: 1710	n:2270000
SLC15A3   2270000 perm   2820 sec   (805 perm/sec)   p_kst 7.533040e-04   p_cons 6.622775e-02   p_joint 3.259912e-04

Joint ci ratio: 1.437874e-01	ci left: 3.024440e-04	ci right 3.497175e-04	k: 742	n:2280000
Cons ci ratio: 9.747535e-03	ci left: 6.591174e-02	ci right 6.655779e-02	k: 151014	n:2280000
KS ci ratio: 9.467691e-02	ci left: 7.157384e-04	ci right 7.872939e-04	k: 1712	n:2280000
SLC15A3   2280000 perm   2843 sec   (802 perm/sec)   p_kst 7.508772e-04   p_cons 6.623421e-02   p_joint 3.254386e-04

Joint ci ratio: 1.434980e-01	ci left: 3.023863e-04	ci right 3.495474e-04	k: 745	n:2290000
Cons ci ratio: 9.725657e-03	ci left: 6.591970e-02	ci right 6.656437e-02	k: 151693	n:2290000
KS ci ratio: 9.448407e-02	ci left: 7.155973e-04	ci right 7.869850e-04	k: 1719	n:2290000
SLC15A3   2290000 perm   2866 sec   (799 perm/sec)   p_kst 7.506550e-04   p_cons 6.624148e-02   p_joint 3.253275e-04

Joint ci ratio: 1.431148e-01	ci left: 3.027483e-04	ci right 3.498291e-04	k: 749	n:2300000
Cons ci ratio: 9.703653e-03	ci left: 6.593106e-02	ci right 6.657438e-02	k: 152380	n:2300000
KS ci ratio: 9.429240e-02	ci left: 7.154577e-04	ci right 7.866786e-04	k: 1726	n:2300000
SLC15A3   2300000 perm   2888 sec   (796 perm/sec)   p_kst 7.504348e-04   p_cons 6.625217e-02   p_joint 3.256522e-04

Joint ci ratio: 1.427346e-01	ci left: 3.031074e-04	ci right 3.501081e-04	k: 753	n:2310000
Cons ci ratio: 9.683085e-03	ci left: 6.592592e-02	ci right 6.656781e-02	k: 153029	n:2310000
KS ci ratio: 9.404763e-02	ci left: 7.161648e-04	ci right 7.872609e-04	k: 1735	n:2310000
SLC15A3   2310000 perm   2911 sec   (794 perm/sec)   p_kst 7.510823e-04   p_cons 6.624632e-02   p_joint 3.259740e-04

Joint ci ratio: 1.424515e-01	ci left: 3.030479e-04	ci right 3.499383e-04	k: 756	n:2320000
Cons ci ratio: 9.662378e-03	ci left: 6.592426e-02	ci right 6.656476e-02	k: 153686	n:2320000
KS ci ratio: 9.396657e-02	ci left: 7.143406e-04	ci right 7.851910e-04	k: 1738	n:2320000
SLC15A3   2320000 perm   2934 sec   (791 perm/sec)   p_kst 7.491379e-04   p_cons 6.624397e-02   p_joint 3.258621e-04

Joint ci ratio: 1.419834e-01	ci left: 3.038168e-04	ci right 3.506586e-04	k: 761	n:2330000
Cons ci ratio: 9.642807e-03	ci left: 6.590977e-02	ci right 6.654882e-02	k: 154313	n:2330000
KS ci ratio: 9.364393e-02	ci left: 7.163042e-04	ci right 7.870921e-04	k: 1750	n:2330000
SLC15A3   2330000 perm   2957 sec   (788 perm/sec)   p_kst 7.510730e-04   p_cons 6.622876e-02   p_joint 3.266094e-04

Joint ci ratio: 1.417974e-01	ci left: 3.033428e-04	ci right 3.500451e-04	k: 763	n:2340000
Cons ci ratio: 9.623055e-03	ci left: 6.589924e-02	ci right 6.653687e-02	k: 154949	n:2340000
KS ci ratio: 9.348394e-02	ci left: 7.157471e-04	ci right 7.863525e-04	k: 1756	n:2340000
SLC15A3   2340000 perm   2980 sec   (785 perm/sec)   p_kst 7.504274e-04   p_cons 6.621752e-02   p_joint 3.260684e-04

Joint ci ratio: 1.414277e-01	ci left: 3.036938e-04	ci right 3.503179e-04	k: 767	n:2350000
Cons ci ratio: 9.604085e-03	ci left: 6.588031e-02	ci right 6.651650e-02	k: 155565	n:2350000
KS ci ratio: 9.332475e-02	ci left: 7.151949e-04	ci right 7.856192e-04	k: 1762	n:2350000
SLC15A3   2350000 perm   3004 sec   (782 perm/sec)   p_kst 7.497872e-04   p_cons 6.619787e-02   p_joint 3.263830e-04

Joint ci ratio: 1.412439e-01	ci left: 3.032245e-04	ci right 3.497109e-04	k: 769	n:2360000
Cons ci ratio: 9.582533e-03	ci left: 6.589622e-02	ci right 6.653112e-02	k: 156263	n:2360000
KS ci ratio: 9.308742e-02	ci left: 7.158891e-04	ci right 7.861927e-04	k: 1771	n:2360000
SLC15A3   2360000 perm   3027 sec   (780 perm/sec)   p_kst 7.504237e-04   p_cons 6.621314e-02   p_joint 3.258475e-04

Joint ci ratio: 1.411524e-01	ci left: 3.023521e-04	ci right 3.486722e-04	k: 770	n:2370000
Cons ci ratio: 9.563017e-03	ci left: 6.588757e-02	ci right 6.652109e-02	k: 156903	n:2370000
KS ci ratio: 9.293026e-02	ci left: 7.153413e-04	ci right 7.854660e-04	k: 1777	n:2370000
SLC15A3   2370000 perm   3050 sec   (777 perm/sec)   p_kst 7.497890e-04   p_cons 6.620380e-02   p_joint 3.248945e-04

Joint ci ratio: 1.409697e-01	ci left: 3.018924e-04	ci right 3.480772e-04	k: 772	n:2380000
Cons ci ratio: 9.541934e-03	ci left: 6.590079e-02	ci right 6.653304e-02	k: 157595	n:2380000
KS ci ratio: 9.277388e-02	ci left: 7.147981e-04	ci right 7.847452e-04	k: 1783	n:2380000
SLC15A3   2380000 perm   3075 sec   (774 perm/sec)   p_kst 7.491597e-04   p_cons 6.621639e-02   p_joint 3.243697e-04

Joint ci ratio: 1.404257e-01	ci left: 3.030513e-04	ci right 3.492196e-04	k: 778	n:2390000
Cons ci ratio: 9.522182e-03	ci left: 6.589846e-02	ci right 6.652937e-02	k: 158250	n:2390000
KS ci ratio: 9.261829e-02	ci left: 7.142596e-04	ci right 7.840304e-04	k: 1789	n:2390000
SLC15A3   2390000 perm   3100 sec   (771 perm/sec)   p_kst 7.485356e-04   p_cons 6.621339e-02   p_joint 3.255230e-04

Joint ci ratio: 1.402458e-01	ci left: 3.025927e-04	ci right 3.486270e-04	k: 780	n:2400000
Cons ci ratio: 9.502776e-03	ci left: 6.589324e-02	ci right 6.652280e-02	k: 158898	n:2400000
KS ci ratio: 9.243773e-02	ci left: 7.141326e-04	ci right 7.837478e-04	k: 1796	n:2400000
SLC15A3   2400000 perm   3123 sec   (768 perm/sec)   p_kst 7.483333e-04   p_cons 6.620750e-02   p_joint 3.250000e-04

Joint ci ratio: 1.399772e-01	ci left: 3.025383e-04	ci right 3.484689e-04	k: 783	n:2410000
Cons ci ratio: 9.482343e-03	ci left: 6.590297e-02	ci right 6.653127e-02	k: 159582	n:2410000
KS ci ratio: 9.225823e-02	ci left: 7.140069e-04	ci right 7.834673e-04	k: 1803	n:2410000
SLC15A3   2410000 perm   3146 sec   (766 perm/sec)   p_kst 7.481328e-04   p_cons 6.621660e-02   p_joint 3.248963e-04

Joint ci ratio: 1.397990e-01	ci left: 3.020856e-04	ci right 3.478843e-04	k: 785	n:2420000
Cons ci ratio: 9.462642e-03	ci left: 6.590479e-02	ci right 6.653179e-02	k: 160247	n:2420000
KS ci ratio: 9.200353e-02	ci left: 7.150935e-04	ci right 7.844573e-04	k: 1813	n:2420000
SLC15A3   2420000 perm   3170 sec   (763 perm/sec)   p_kst 7.491736e-04   p_cons 6.621777e-02   p_joint 3.243802e-04

Joint ci ratio: 1.391805e-01	ci left: 3.036226e-04	ci right 3.494338e-04	k: 792	n:2430000
Cons ci ratio: 9.442811e-03	ci left: 6.590988e-02	ci right 6.653560e-02	k: 160920	n:2430000
KS ci ratio: 9.182654e-02	ci left: 7.149652e-04	ci right 7.841759e-04	k: 1820	n:2430000
SLC15A3   2430000 perm   3193 sec   (761 perm/sec)   p_kst 7.489712e-04   p_cons 6.622222e-02   p_joint 3.259259e-04

Joint ci ratio: 1.390929e-01	ci left: 3.027738e-04	ci right 3.484258e-04	k: 793	n:2440000
Cons ci ratio: 9.425135e-03	ci left: 6.588834e-02	ci right 6.651269e-02	k: 161528	n:2440000
KS ci ratio: 9.162549e-02	ci left: 7.152385e-04	ci right 7.843159e-04	k: 1828	n:2440000
SLC15A3   2440000 perm   3217 sec   (759 perm/sec)   p_kst 7.491803e-04   p_cons 6.620000e-02   p_joint 3.250000e-04

Joint ci ratio: 1.388309e-01	ci left: 3.027199e-04	ci right 3.482707e-04	k: 796	n:2450000
Cons ci ratio: 9.405291e-03	ci left: 6.589672e-02	ci right 6.651982e-02	k: 162209	n:2450000
KS ci ratio: 9.157553e-02	ci left: 7.131167e-04	ci right 7.819497e-04	k: 1830	n:2450000
SLC15A3   2450000 perm   3240 sec   (756 perm/sec)   p_kst 7.469388e-04   p_cons 6.620776e-02   p_joint 3.248980e-04

Joint ci ratio: 1.383974e-01	ci left: 3.034514e-04	ci right 3.489579e-04	k: 801	n:2460000
Cons ci ratio: 9.384245e-03	ci left: 6.592247e-02	ci right 6.654441e-02	k: 162933	n:2460000
KS ci ratio: 9.145080e-02	ci left: 7.122039e-04	ci right 7.808501e-04	k: 1835	n:2460000
SLC15A3   2460000 perm   3264 sec   (754 perm/sec)   p_kst 7.459350e-04   p_cons 6.623293e-02   p_joint 3.256098e-04

Joint ci ratio: 1.383975e-01	ci left: 3.022229e-04	ci right 3.475451e-04	k: 801	n:2470000
Cons ci ratio: 9.364810e-03	ci left: 6.592862e-02	ci right 6.654932e-02	k: 163609	n:2470000
KS ci ratio: 9.132658e-02	ci left: 7.112985e-04	ci right 7.797593e-04	k: 1840	n:2470000
SLC15A3   2470000 perm   3289 sec   (751 perm/sec)   p_kst 7.449393e-04   p_cons 6.623846e-02   p_joint 3.242915e-04

Joint ci ratio: 1.382253e-01	ci left: 3.017828e-04	ci right 3.469781e-04	k: 803	n:2480000
Cons ci ratio: 9.344399e-03	ci left: 6.594920e-02	ci right 6.656874e-02	k: 164321	n:2480000
KS ci ratio: 9.115345e-02	ci left: 7.111885e-04	ci right 7.795021e-04	k: 1847	n:2480000
SLC15A3   2480000 perm   3313 sec   (749 perm/sec)   p_kst 7.447581e-04   p_cons 6.625847e-02   p_joint 3.237903e-04

Joint ci ratio: 1.377123e-01	ci left: 3.028972e-04	ci right 3.480773e-04	k: 809	n:2490000
Cons ci ratio: 9.326300e-03	ci left: 6.594078e-02	ci right 6.655903e-02	k: 164961	n:2490000
KS ci ratio: 9.085885e-02	ci left: 7.130420e-04	ci right 7.813004e-04	k: 1859	n:2490000
SLC15A3   2490000 perm   3337 sec   (746 perm/sec)   p_kst 7.465863e-04   p_cons 6.624940e-02   p_joint 3.248996e-04

Joint ci ratio: 1.375427e-01	ci left: 3.024581e-04	ci right 3.475125e-04	k: 811	n:2500000
Cons ci ratio: 9.306561e-03	ci left: 6.595556e-02	ci right 6.657264e-02	k: 165659	n:2500000
KS ci ratio: 9.078575e-02	ci left: 7.113625e-04	ci right 7.794025e-04	k: 1862	n:2500000
SLC15A3   2500000 perm   3361 sec   (744 perm/sec)   p_kst 7.448000e-04   p_cons 6.626360e-02   p_joint 3.244000e-04

Joint ci ratio: 1.368699e-01	ci left: 3.043310e-04	ci right 3.494246e-04	k: 819	n:2510000
Cons ci ratio: 9.287903e-03	ci left: 6.595751e-02	ci right 6.657337e-02	k: 166325	n:2510000
KS ci ratio: 9.059144e-02	ci left: 7.116434e-04	ci right 7.795568e-04	k: 1870	n:2510000
SLC15A3   2510000 perm   3385 sec   (741 perm/sec)   p_kst 7.450199e-04   p_cons 6.626494e-02   p_joint 3.262948e-04

Joint ci ratio: 1.367866e-01	ci left: 3.035065e-04	ci right 3.484484e-04	k: 820	n:2520000
Cons ci ratio: 9.269684e-03	ci left: 6.595510e-02	ci right 6.656971e-02	k: 166980	n:2520000
KS ci ratio: 9.037431e-02	ci left: 7.123100e-04	ci right 7.801156e-04	k: 1879	n:2520000
SLC15A3   2520000 perm   3410 sec   (739 perm/sec)   p_kst 7.456349e-04   p_cons 6.626190e-02   p_joint 3.253968e-04

Joint ci ratio: 1.364546e-01	ci left: 3.038339e-04	ci right 3.487062e-04	k: 824	n:2530000
Cons ci ratio: 9.251246e-03	ci left: 6.595704e-02	ci right 6.657044e-02	k: 167646	n:2530000
KS ci ratio: 9.030237e-02	ci left: 7.106535e-04	ci right 7.782447e-04	k: 1882	n:2530000
SLC15A3   2530000 perm   3436 sec   (736 perm/sec)   p_kst 7.438735e-04   p_cons 6.626324e-02   p_joint 3.256917e-04

Joint ci ratio: 1.362895e-01	ci left: 3.033982e-04	ci right 3.481476e-04	k: 826	n:2540000
Cons ci ratio: 9.233535e-03	ci left: 6.595071e-02	ci right 6.656288e-02	k: 168291	n:2540000
KS ci ratio: 9.023060e-02	ci left: 7.090101e-04	ci right 7.763885e-04	k: 1885	n:2540000
SLC15A3   2540000 perm   3461 sec   (734 perm/sec)   p_kst 7.421260e-04   p_cons 6.625630e-02   p_joint 3.251969e-04

Joint ci ratio: 1.360430e-01	ci left: 3.033448e-04	ci right 3.479988e-04	k: 829	n:2550000
Cons ci ratio: 9.216568e-03	ci left: 6.593583e-02	ci right 6.654672e-02	k: 168914	n:2550000
KS ci ratio: 9.001605e-02	ci left: 7.096795e-04	ci right 7.769528e-04	k: 1894	n:2550000
SLC15A3   2550000 perm   3486 sec   (732 perm/sec)   p_kst 7.427451e-04   p_cons 6.624078e-02   p_joint 3.250980e-04

Joint ci ratio: 1.356350e-01	ci left: 3.040466e-04	ci right 3.486589e-04	k: 834	n:2560000
Cons ci ratio: 9.197342e-03	ci left: 6.595264e-02	ci right 6.656241e-02	k: 169618	n:2560000
KS ci ratio: 8.977943e-02	ci left: 7.107258e-04	ci right 7.779118e-04	k: 1904	n:2560000
SLC15A3   2560000 perm   3510 sec   (729 perm/sec)   p_kst 7.437500e-04   p_cons 6.625703e-02   p_joint 3.257813e-04

Joint ci ratio: 1.353113e-01	ci left: 3.043673e-04	ci right 3.489114e-04	k: 838	n:2570000
Cons ci ratio: 9.180689e-03	ci left: 6.593631e-02	ci right 6.654482e-02	k: 170237	n:2570000
KS ci ratio: 8.959150e-02	ci left: 7.110034e-04	ci right 7.780676e-04	k: 1912	n:2570000
SLC15A3   2570000 perm   3535 sec   (727 perm/sec)   p_kst 7.439689e-04   p_cons 6.624008e-02   p_joint 3.260700e-04

Joint ci ratio: 1.349899e-01	ci left: 3.046855e-04	ci right 3.491618e-04	k: 842	n:2580000
Cons ci ratio: 9.162575e-03	ci left: 6.594100e-02	ci right 6.654835e-02	k: 170910	n:2580000
KS ci ratio: 8.935820e-02	ci left: 7.120368e-04	ci right 7.790145e-04	k: 1922	n:2580000
SLC15A3   2580000 perm   3561 sec   (725 perm/sec)   p_kst 7.449612e-04   p_cons 6.624419e-02   p_joint 3.263566e-04

Joint ci ratio: 1.345120e-01	ci left: 3.057476e-04	ci right 3.502083e-04	k: 848	n:2590000
Cons ci ratio: 9.144883e-03	ci left: 6.594142e-02	ci right 6.654759e-02	k: 171572	n:2590000
KS ci ratio: 8.912672e-02	ci left: 7.130625e-04	ci right 7.799538e-04	k: 1932	n:2590000
SLC15A3   2590000 perm   3588 sec   (722 perm/sec)   p_kst 7.459459e-04   p_cons 6.624402e-02   p_joint 3.274131e-04

Joint ci ratio: 1.342750e-01	ci left: 3.056867e-04	ci right 3.500540e-04	k: 851	n:2600000
Cons ci ratio: 9.128228e-03	ci left: 6.592916e-02	ci right 6.653411e-02	k: 172201	n:2600000
KS ci ratio: 8.894285e-02	ci left: 7.133283e-04	ci right 7.800994e-04	k: 1940	n:2600000
SLC15A3   2600000 perm   3613 sec   (720 perm/sec)   p_kst 7.461538e-04   p_cons 6.623115e-02   p_joint 3.273077e-04

Joint ci ratio: 1.341177e-01	ci left: 3.052561e-04	ci right 3.495048e-04	k: 853	n:2610000
Cons ci ratio: 9.109605e-03	ci left: 6.594492e-02	ci right 6.654877e-02	k: 172903	n:2610000
KS ci ratio: 8.885141e-02	ci left: 7.120937e-04	ci right 7.786772e-04	k: 1944	n:2610000
SLC15A3   2610000 perm   3640 sec   (717 perm/sec)   p_kst 7.448276e-04   p_cons 6.624636e-02   p_joint 3.268199e-04

Joint ci ratio: 1.340393e-01	ci left: 3.044598e-04	ci right 3.485653e-04	k: 854	n:2620000
Cons ci ratio: 9.092890e-03	ci left: 6.593617e-02	ci right 6.653883e-02	k: 173541	n:2620000
KS ci ratio: 8.882868e-02	ci left: 7.097490e-04	ci right 7.760953e-04	k: 1945	n:2620000
SLC15A3   2620000 perm   3667 sec   (714 perm/sec)   p_kst 7.423664e-04   p_cons 6.623702e-02   p_joint 3.259542e-04

Joint ci ratio: 1.338047e-01	ci left: 3.044047e-04	ci right 3.484188e-04	k: 857	n:2630000
Cons ci ratio: 9.075932e-03	ci left: 6.593205e-02	ci right 6.653354e-02	k: 174191	n:2630000
KS ci ratio: 8.864665e-02	ci left: 7.100247e-04	ci right 7.762537e-04	k: 1953	n:2630000
SLC15A3   2630000 perm   3693 sec   (712 perm/sec)   p_kst 7.425856e-04   p_cons 6.623232e-02   p_joint 3.258555e-04

Joint ci ratio: 1.335714e-01	ci left: 3.043500e-04	ci right 3.482734e-04	k: 860	n:2640000
Cons ci ratio: 9.058680e-03	ci left: 6.593325e-02	ci right 6.653361e-02	k: 174855	n:2640000
KS ci ratio: 8.846573e-02	ci left: 7.102984e-04	ci right 7.764107e-04	k: 1961	n:2640000
SLC15A3   2640000 perm   3719 sec   (710 perm/sec)   p_kst 7.428030e-04   p_cons 6.623295e-02   p_joint 3.257576e-04

Joint ci ratio: 1.334166e-01	ci left: 3.039310e-04	ci right 3.477390e-04	k: 862	n:2650000
Cons ci ratio: 9.042767e-03	ci left: 6.591750e-02	ci right 6.651665e-02	k: 175474	n:2650000
KS ci ratio: 8.839824e-02	ci left: 7.087250e-04	ci right 7.746380e-04	k: 1964	n:2650000
SLC15A3   2650000 perm   3745 sec   (708 perm/sec)   p_kst 7.411321e-04   p_cons 6.621660e-02   p_joint 3.252830e-04

Joint ci ratio: 1.331085e-01	ci left: 3.042420e-04	ci right 3.479856e-04	k: 866	n:2660000
Cons ci ratio: 9.025731e-03	ci left: 6.591838e-02	ci right 6.651640e-02	k: 176137	n:2660000
KS ci ratio: 8.824122e-02	ci left: 7.086341e-04	ci right 7.744155e-04	k: 1971	n:2660000
SLC15A3   2660000 perm   3771 sec   (705 perm/sec)   p_kst 7.409774e-04   p_cons 6.621692e-02   p_joint 3.255639e-04

Joint ci ratio: 1.329552e-01	ci left: 3.038267e-04	ci right 3.474563e-04	k: 868	n:2670000
Cons ci ratio: 9.009036e-03	ci left: 6.591588e-02	ci right 6.651277e-02	k: 176791	n:2670000
KS ci ratio: 8.801829e-02	ci left: 7.096428e-04	ci right 7.753429e-04	k: 1981	n:2670000
SLC15A3   2670000 perm   3798 sec   (703 perm/sec)   p_kst 7.419476e-04   p_cons 6.621386e-02   p_joint 3.250936e-04

Joint ci ratio: 1.328788e-01	ci left: 3.030537e-04	ci right 3.465453e-04	k: 869	n:2680000
Cons ci ratio: 8.991809e-03	ci left: 6.592197e-02	ci right 6.651777e-02	k: 177468	n:2680000
KS ci ratio: 8.777499e-02	ci left: 7.110092e-04	ci right 7.766445e-04	k: 1992	n:2680000
SLC15A3   2680000 perm   3824 sec   (701 perm/sec)   p_kst 7.432836e-04   p_cons 6.621940e-02   p_joint 3.242537e-04

Joint ci ratio: 1.324986e-01	ci left: 3.037242e-04	ci right 3.471775e-04	k: 874	n:2690000
Cons ci ratio: 8.974573e-03	ci left: 6.592950e-02	ci right 6.652422e-02	k: 178149	n:2690000
KS ci ratio: 8.766513e-02	ci left: 7.101840e-04	ci right 7.756569e-04	k: 1997	n:2690000
SLC15A3   2690000 perm   3851 sec   (699 perm/sec)   p_kst 7.423792e-04   p_cons 6.622639e-02   p_joint 3.249071e-04

Joint ci ratio: 1.322721e-01	ci left: 3.036736e-04	ci right 3.470395e-04	k: 877	n:2700000
Cons ci ratio: 8.958213e-03	ci left: 6.592626e-02	ci right 6.651986e-02	k: 178801	n:2700000
KS ci ratio: 8.744653e-02	ci left: 7.111763e-04	ci right 7.765688e-04	k: 2007	n:2700000
SLC15A3   2700000 perm   3877 sec   (696 perm/sec)   p_kst 7.433333e-04   p_cons 6.622259e-02   p_joint 3.248148e-04

Joint ci ratio: 1.318970e-01	ci left: 3.043371e-04	ci right 3.476649e-04	k: 882	n:2710000
Cons ci ratio: 8.941463e-03	ci left: 6.592967e-02	ci right 6.652218e-02	k: 179471	n:2710000
KS ci ratio: 8.731620e-02	ci left: 7.107177e-04	ci right 7.759656e-04	k: 2013	n:2710000
SLC15A3   2710000 perm   3903 sec   (694 perm/sec)   p_kst 7.428044e-04   p_cons 6.622546e-02   p_joint 3.254613e-04

Joint ci ratio: 1.318224e-01	ci left: 3.035737e-04	ci right 3.467665e-04	k: 883	n:2720000
Cons ci ratio: 8.924726e-03	ci left: 6.593415e-02	ci right 6.652559e-02	k: 180144	n:2720000
KS ci ratio: 8.716486e-02	ci left: 7.106221e-04	ci right 7.757425e-04	k: 2020	n:2720000
SLC15A3   2720000 perm   3929 sec   (692 perm/sec)   p_kst 7.426471e-04   p_cons 6.622941e-02   p_joint 3.246324e-04

Joint ci ratio: 1.316736e-01	ci left: 3.031702e-04	ci right 3.462530e-04	k: 885	n:2730000
Cons ci ratio: 8.908558e-03	ci left: 6.593203e-02	ci right 6.652237e-02	k: 180799	n:2730000
KS ci ratio: 8.692855e-02	ci left: 7.119607e-04	ci right 7.770179e-04	k: 2031	n:2730000
SLC15A3   2730000 perm   3956 sec   (690 perm/sec)   p_kst 7.439560e-04   p_cons 6.622674e-02   p_joint 3.241758e-04

Joint ci ratio: 1.312299e-01	ci left: 3.041815e-04	ci right 3.472510e-04	k: 891	n:2740000
Cons ci ratio: 8.892189e-03	ci left: 6.593393e-02	ci right 6.652320e-02	k: 181465	n:2740000
KS ci ratio: 8.677922e-02	ci left: 7.118616e-04	ci right 7.767923e-04	k: 2038	n:2740000
SLC15A3   2740000 perm   3982 sec   (688 perm/sec)   p_kst 7.437956e-04   p_cons 6.622810e-02   p_joint 3.251825e-04

Joint ci ratio: 1.310098e-01	ci left: 3.041305e-04	ci right 3.471150e-04	k: 894	n:2750000
Cons ci ratio: 8.875257e-03	ci left: 6.594488e-02	ci right 6.653312e-02	k: 182156	n:2750000
KS ci ratio: 8.663065e-02	ci left: 7.117632e-04	ci right 7.765682e-04	k: 2045	n:2750000
SLC15A3   2750000 perm   4009 sec   (686 perm/sec)   p_kst 7.436364e-04   p_cons 6.623855e-02   p_joint 3.250909e-04

Joint ci ratio: 1.307908e-01	ci left: 3.040799e-04	ci right 3.469798e-04	k: 897	n:2760000
Cons ci ratio: 8.858967e-03	ci left: 6.594817e-02	ci right 6.653535e-02	k: 182826	n:2760000
KS ci ratio: 8.648284e-02	ci left: 7.116657e-04	ci right 7.763457e-04	k: 2052	n:2760000
SLC15A3   2760000 perm   4036 sec   (684 perm/sec)   p_kst 7.434783e-04   p_cons 6.624130e-02   p_joint 3.250000e-04

Joint ci ratio: 1.303560e-01	ci left: 3.050775e-04	ci right 3.479640e-04	k: 903	n:2770000
Cons ci ratio: 8.843540e-03	ci left: 6.594062e-02	ci right 6.652671e-02	k: 183466	n:2770000
KS ci ratio: 8.627294e-02	ci left: 7.126287e-04	ci right 7.772311e-04	k: 2062	n:2770000
SLC15A3   2770000 perm   4063 sec   (682 perm/sec)   p_kst 7.444043e-04   p_cons 6.623321e-02   p_joint 3.259928e-04

Joint ci ratio: 1.298541e-01	ci left: 3.064161e-04	ci right 3.493122e-04	k: 910	n:2780000
Cons ci ratio: 8.827346e-03	ci left: 6.594498e-02	ci right 6.653003e-02	k: 184139	n:2780000
KS ci ratio: 8.606456e-02	ci left: 7.135849e-04	ci right 7.781099e-04	k: 2072	n:2780000
SLC15A3   2780000 perm   4089 sec   (680 perm/sec)   p_kst 7.453237e-04   p_cons 6.623705e-02   p_joint 3.273381e-04

Joint ci ratio: 1.293580e-01	ci left: 3.077455e-04	ci right 3.506504e-04	k: 917	n:2790000
Cons ci ratio: 8.811471e-03	ci left: 6.594608e-02	ci right 6.653009e-02	k: 184803	n:2790000
KS ci ratio: 8.585768e-02	ci left: 7.145344e-04	ci right 7.789822e-04	k: 2082	n:2790000
SLC15A3   2790000 perm   4117 sec   (678 perm/sec)   p_kst 7.462366e-04   p_cons 6.623763e-02   p_joint 3.286738e-04

Joint ci ratio: 1.290071e-01	ci left: 3.083744e-04	ci right 3.512415e-04	k: 922	n:2800000
Cons ci ratio: 8.795884e-03	ci left: 6.594433e-02	ci right 6.652728e-02	k: 185459	n:2800000
KS ci ratio: 8.567278e-02	ci left: 7.151279e-04	ci right 7.794833e-04	k: 2091	n:2800000
SLC15A3   2800000 perm   4145 sec   (676 perm/sec)   p_kst 7.467857e-04   p_cons 6.623536e-02   p_joint 3.292857e-04

Joint ci ratio: 1.289373e-01	ci left: 3.076214e-04	ci right 3.503589e-04	k: 923	n:2810000
Cons ci ratio: 8.780355e-03	ci left: 6.594295e-02	ci right 6.652485e-02	k: 186116	n:2810000
KS ci ratio: 8.550943e-02	ci left: 7.153690e-04	ci right 7.796172e-04	k: 2099	n:2810000
SLC15A3   2810000 perm   4172 sec   (673 perm/sec)   p_kst 7.469751e-04   p_cons 6.623345e-02   p_joint 3.284698e-04

Joint ci ratio: 1.287285e-01	ci left: 3.075601e-04	ci right 3.502145e-04	k: 926	n:2820000
Cons ci ratio: 8.763776e-03	ci left: 6.595750e-02	ci right 6.653843e-02	k: 186818	n:2820000
KS ci ratio: 8.542816e-02	ci left: 7.142203e-04	ci right 7.783014e-04	k: 2103	n:2820000
SLC15A3   2820000 perm   4200 sec   (671 perm/sec)   p_kst 7.457447e-04   p_cons 6.624752e-02   p_joint 3.283688e-04

Joint ci ratio: 1.285207e-01	ci left: 3.074993e-04	ci right 3.500712e-04	k: 929	n:2830000
Cons ci ratio: 8.747941e-03	ci left: 6.596278e-02	ci right 6.654270e-02	k: 187494	n:2830000
KS ci ratio: 8.534712e-02	ci left: 7.130798e-04	ci right 7.769948e-04	k: 2107	n:2830000
SLC15A3   2830000 perm   4229 sec   (669 perm/sec)   p_kst 7.445230e-04   p_cons 6.625230e-02   p_joint 3.282686e-04

Joint ci ratio: 1.281766e-01	ci left: 3.081206e-04	ci right 3.506556e-04	k: 934	n:2840000
Cons ci ratio: 8.732291e-03	ci left: 6.596662e-02	ci right 6.654553e-02	k: 188166	n:2840000
KS ci ratio: 8.516549e-02	ci left: 7.136704e-04	ci right 7.774955e-04	k: 2116	n:2840000
SLC15A3   2840000 perm   4257 sec   (667 perm/sec)   p_kst 7.450704e-04   p_cons 6.625563e-02   p_joint 3.288732e-04

Joint ci ratio: 1.280397e-01	ci left: 3.077187e-04	ci right 3.501495e-04	k: 936	n:2850000
Cons ci ratio: 8.716798e-03	ci left: 6.596939e-02	ci right 6.654728e-02	k: 188835	n:2850000
KS ci ratio: 8.500502e-02	ci left: 7.139136e-04	ci right 7.776342e-04	k: 2124	n:2850000
SLC15A3   2850000 perm   4285 sec   (665 perm/sec)   p_kst 7.452632e-04   p_cons 6.625789e-02   p_joint 3.284211e-04

Joint ci ratio: 1.279715e-01	ci left: 3.069812e-04	ci right 3.492860e-04	k: 937	n:2860000
Cons ci ratio: 8.701536e-03	ci left: 6.597004e-02	ci right 6.654693e-02	k: 189498	n:2860000
KS ci ratio: 8.480567e-02	ci left: 7.148397e-04	ci right 7.784859e-04	k: 2134	n:2860000
SLC15A3   2860000 perm   4313 sec   (663 perm/sec)   p_kst 7.461538e-04   p_cons 6.625804e-02   p_joint 3.276224e-04

Joint ci ratio: 1.278353e-01	ci left: 3.065861e-04	ci right 3.487882e-04	k: 939	n:2870000
Cons ci ratio: 8.686230e-03	ci left: 6.597242e-02	ci right 6.654831e-02	k: 190166	n:2870000
KS ci ratio: 8.458799e-02	ci left: 7.161006e-04	ci right 7.796873e-04	k: 2145	n:2870000
SLC15A3   2870000 perm   4341 sec   (661 perm/sec)   p_kst 7.473868e-04   p_cons 6.625993e-02   p_joint 3.271777e-04

Joint ci ratio: 1.276318e-01	ci left: 3.065300e-04	ci right 3.486520e-04	k: 942	n:2880000
Cons ci ratio: 8.671882e-03	ci left: 6.596232e-02	ci right 6.653716e-02	k: 190798	n:2880000
KS ci ratio: 8.441115e-02	ci left: 7.166731e-04	ci right 7.801710e-04	k: 2154	n:2880000
SLC15A3   2880000 perm   4369 sec   (659 perm/sec)   p_kst 7.479167e-04   p_cons 6.624931e-02   p_joint 3.270833e-04

Joint ci ratio: 1.271607e-01	ci left: 3.078143e-04	ci right 3.499449e-04	k: 949	n:2890000
Cons ci ratio: 8.656974e-03	ci left: 6.596126e-02	ci right 6.653511e-02	k: 191456	n:2890000
KS ci ratio: 8.429391e-02	ci left: 7.162256e-04	ci right 7.795914e-04	k: 2160	n:2890000
SLC15A3   2890000 perm   4398 sec   (657 perm/sec)   p_kst 7.474048e-04   p_cons 6.624775e-02   p_joint 3.283737e-04

Joint ci ratio: 1.270938e-01	ci left: 3.070867e-04	ci right 3.490940e-04	k: 950	n:2900000
Cons ci ratio: 8.641349e-03	ci left: 6.597157e-02	ci right 6.654446e-02	k: 192147	n:2900000
KS ci ratio: 8.419659e-02	ci left: 7.154436e-04	ci right 7.786636e-04	k: 2165	n:2900000
SLC15A3   2900000 perm   4426 sec   (655 perm/sec)   p_kst 7.465517e-04   p_cons 6.625759e-02   p_joint 3.275862e-04

Joint ci ratio: 1.268274e-01	ci left: 3.073624e-04	ci right 3.493125e-04	k: 954	n:2910000
Cons ci ratio: 8.626239e-03	ci left: 6.597564e-02	ci right 6.654756e-02	k: 192820	n:2910000
KS ci ratio: 8.400287e-02	ci left: 7.163492e-04	ci right 7.794965e-04	k: 2175	n:2910000
SLC15A3   2910000 perm   4455 sec   (653 perm/sec)   p_kst 7.474227e-04   p_cons 6.626117e-02   p_joint 3.278351e-04

Joint ci ratio: 1.265626e-01	ci left: 3.076362e-04	ci right 3.495295e-04	k: 958	n:2920000
Cons ci ratio: 8.611398e-03	ci left: 6.597695e-02	ci right 6.654789e-02	k: 193485	n:2920000
KS ci ratio: 8.392582e-02	ci left: 7.152370e-04	ci right 7.782256e-04	k: 2179	n:2920000
SLC15A3   2920000 perm   4483 sec   (651 perm/sec)   p_kst 7.462329e-04   p_cons 6.626199e-02   p_joint 3.280822e-04

Joint ci ratio: 1.264309e-01	ci left: 3.072472e-04	ci right 3.490408e-04	k: 960	n:2930000
Cons ci ratio: 8.596895e-03	ci left: 6.597450e-02	ci right 6.654445e-02	k: 194139	n:2930000
KS ci ratio: 8.384897e-02	ci left: 7.141325e-04	ci right 7.769634e-04	k: 2183	n:2930000
SLC15A3   2930000 perm   4511 sec   (650 perm/sec)   p_kst 7.450512e-04   p_cons 6.625904e-02   p_joint 3.276451e-04

Joint ci ratio: 1.263652e-01	ci left: 3.065316e-04	ci right 3.482045e-04	k: 961	n:2940000
Cons ci ratio: 8.583031e-03	ci left: 6.596392e-02	ci right 6.653286e-02	k: 194769	n:2940000
KS ci ratio: 8.371493e-02	ci left: 7.140345e-04	ci right 7.767515e-04	k: 2190	n:2940000
SLC15A3   2940000 perm   4540 sec   (648 perm/sec)   p_kst 7.448980e-04   p_cons 6.624796e-02   p_joint 3.268707e-04

Joint ci ratio: 1.261033e-01	ci left: 3.068056e-04	ci right 3.484228e-04	k: 965	n:2950000
Cons ci ratio: 8.568083e-03	ci left: 6.596999e-02	ci right 6.653798e-02	k: 195448	n:2950000
KS ci ratio: 8.363867e-02	ci left: 7.129416e-04	ci right 7.755027e-04	k: 2194	n:2950000
SLC15A3   2950000 perm   4569 sec   (646 perm/sec)   p_kst 7.437288e-04   p_cons 6.625356e-02   p_joint 3.271186e-04

Joint ci ratio: 1.259729e-01	ci left: 3.064234e-04	ci right 3.479427e-04	k: 967	n:2960000
Cons ci ratio: 8.553330e-03	ci left: 6.597433e-02	ci right 6.654138e-02	k: 196122	n:2960000
KS ci ratio: 8.348666e-02	ci left: 7.131793e-04	ci right 7.756419e-04	k: 2202	n:2960000
SLC15A3   2960000 perm   4597 sec   (644 perm/sec)   p_kst 7.439189e-04   p_cons 6.625743e-02   p_joint 3.266892e-04

Joint ci ratio: 1.257782e-01	ci left: 3.063700e-04	ci right 3.478131e-04	k: 970	n:2970000
Cons ci ratio: 8.538491e-03	ci left: 6.598100e-02	ci right 6.654712e-02	k: 196803	n:2970000
KS ci ratio: 8.335434e-02	ci left: 7.130857e-04	ci right 7.754364e-04	k: 2209	n:2970000
SLC15A3   2970000 perm   4626 sec   (642 perm/sec)   p_kst 7.437710e-04   p_cons 6.626364e-02   p_joint 3.265993e-04

Joint ci ratio: 1.255844e-01	ci left: 3.063170e-04	ci right 3.476843e-04	k: 973	n:2980000
Cons ci ratio: 8.523728e-03	ci left: 6.598762e-02	ci right 6.655282e-02	k: 197484	n:2980000
KS ci ratio: 8.318511e-02	ci left: 7.136501e-04	ci right 7.759173e-04	k: 2218	n:2980000
SLC15A3   2980000 perm   4655 sec   (640 perm/sec)   p_kst 7.442953e-04   p_cons 6.626980e-02   p_joint 3.265101e-04

Joint ci ratio: 1.253914e-01	ci left: 3.062644e-04	ci right 3.475563e-04	k: 976	n:2990000
Cons ci ratio: 8.509708e-03	ci left: 6.598452e-02	ci right 6.654876e-02	k: 198136	n:2990000
KS ci ratio: 8.307289e-02	ci left: 7.132283e-04	ci right 7.753706e-04	k: 2224	n:2990000
SLC15A3   2990000 perm   4685 sec   (638 perm/sec)   p_kst 7.438127e-04   p_cons 6.626622e-02   p_joint 3.264214e-04

Joint ci ratio: 1.251993e-01	ci left: 3.062121e-04	ci right 3.474291e-04	k: 979	n:3000000
Cons ci ratio: 8.495414e-03	ci left: 6.598644e-02	ci right 6.654973e-02	k: 198803	n:3000000
KS ci ratio: 8.284972e-02	ci left: 7.147679e-04	ci right 7.768690e-04	k: 2236	n:3000000
SLC15A3   3000000 perm   4714 sec   (636 perm/sec)   p_kst 7.453333e-04   p_cons 6.626767e-02   p_joint 3.263333e-04

Joint ci ratio: 1.251356e-01	ci left: 3.055166e-04	ci right 3.466174e-04	k: 980	n:3010000
Cons ci ratio: 8.481648e-03	ci left: 6.598171e-02	ci right 6.654405e-02	k: 199450	n:3010000
KS ci ratio: 8.268353e-02	ci left: 7.153214e-04	ci right 7.773399e-04	k: 2245	n:3010000
SLC15A3   3010000 perm   4743 sec   (635 perm/sec)   p_kst 7.458472e-04   p_cons 6.626246e-02   p_joint 3.255814e-04

Joint ci ratio: 1.247546e-01	ci left: 3.064297e-04	ci right 3.475185e-04	k: 986	n:3020000
Cons ci ratio: 8.468242e-03	ci left: 6.597271e-02	ci right 6.653408e-02	k: 200084	n:3020000
KS ci ratio: 8.255499e-02	ci left: 7.152228e-04	ci right 7.771317e-04	k: 2252	n:3020000
SLC15A3   3020000 perm   4772 sec   (633 perm/sec)   p_kst 7.456954e-04   p_cons 6.625298e-02   p_joint 3.264901e-04

Joint ci ratio: 1.246284e-01	ci left: 3.060578e-04	ci right 3.470522e-04	k: 988	n:3030000
Cons ci ratio: 8.454517e-03	ci left: 6.596938e-02	ci right 6.652980e-02	k: 200735	n:3030000
KS ci ratio: 8.239057e-02	ci left: 7.157713e-04	ci right 7.775985e-04	k: 2261	n:3030000
SLC15A3   3030000 perm   4802 sec   (631 perm/sec)   p_kst 7.462046e-04   p_cons 6.624917e-02   p_joint 3.260726e-04

Joint ci ratio: 1.243145e-01	ci left: 3.066446e-04	ci right 3.476065e-04	k: 993	n:3040000
Cons ci ratio: 8.440544e-03	ci left: 6.597066e-02	ci right 6.653017e-02	k: 201400	n:3040000
KS ci ratio: 8.228154e-02	ci left: 7.153499e-04	ci right 7.770549e-04	k: 2267	n:3040000
SLC15A3   3040000 perm   4833 sec   (629 perm/sec)   p_kst 7.457237e-04   p_cons 6.625000e-02   p_joint 3.266447e-04

Joint ci ratio: 1.242521e-01	ci left: 3.059569e-04	ci right 3.468049e-04	k: 994	n:3050000
Cons ci ratio: 8.426148e-03	ci left: 6.597914e-02	ci right 6.653775e-02	k: 202087	n:3050000
KS ci ratio: 8.222723e-02	ci left: 7.139678e-04	ci right 7.755110e-04	k: 2270	n:3050000
SLC15A3   3050000 perm   4862 sec   (627 perm/sec)   p_kst 7.442623e-04   p_cons 6.625803e-02   p_joint 3.259016e-04

Joint ci ratio: 1.240652e-01	ci left: 3.059069e-04	ci right 3.466824e-04	k: 997	n:3060000
Cons ci ratio: 8.411693e-03	ci left: 6.598951e-02	ci right 6.654726e-02	k: 202780	n:3060000
KS ci ratio: 8.211885e-02	ci left: 7.135551e-04	ci right 7.749778e-04	k: 2276	n:3060000
SLC15A3   3060000 perm   4892 sec   (626 perm/sec)   p_kst 7.437908e-04   p_cons 6.626797e-02   p_joint 3.258170e-04

Joint ci ratio: 1.238791e-01	ci left: 3.058574e-04	ci right 3.465606e-04	k: 1000	n:3070000
Cons ci ratio: 8.398351e-03	ci left: 6.598454e-02	ci right 6.654136e-02	k: 203426	n:3070000
KS ci ratio: 8.195701e-02	ci left: 7.141023e-04	ci right 7.754451e-04	k: 2285	n:3070000
SLC15A3   3070000 perm   4921 sec   (624 perm/sec)   p_kst 7.442997e-04   p_cons 6.626254e-02   p_joint 3.257329e-04

Joint ci ratio: 1.236323e-01	ci left: 3.061229e-04	ci right 3.467743e-04	k: 1004	n:3080000
Cons ci ratio: 8.384060e-03	ci left: 6.599451e-02	ci right 6.655046e-02	k: 204118	n:3080000
KS ci ratio: 8.184969e-02	ci left: 7.136919e-04	ci right 7.749154e-04	k: 2291	n:3080000
SLC15A3   3080000 perm   4951 sec   (622 perm/sec)   p_kst 7.438312e-04   p_cons 6.627208e-02   p_joint 3.259740e-04

Joint ci ratio: 1.234482e-01	ci left: 3.060730e-04	ci right 3.466529e-04	k: 1007	n:3090000
Cons ci ratio: 8.370542e-03	ci left: 6.599408e-02	ci right 6.654912e-02	k: 204778	n:3090000
KS ci ratio: 8.167168e-02	ci left: 7.145523e-04	ci right 7.757099e-04	k: 2301	n:3090000
SLC15A3   3090000 perm   4980 sec   (620 perm/sec)   p_kst 7.446602e-04   p_cons 6.627120e-02   p_joint 3.258900e-04

Joint ci ratio: 1.233260e-01	ci left: 3.057109e-04	ci right 3.461997e-04	k: 1009	n:3100000
Cons ci ratio: 8.356567e-03	ci left: 6.600138e-02	ci right 6.655556e-02	k: 205462	n:3100000
KS ci ratio: 8.158316e-02	ci left: 7.138273e-04	ci right 7.748535e-04	k: 2306	n:3100000
SLC15A3   3100000 perm   5011 sec   (619 perm/sec)   p_kst 7.438710e-04   p_cons 6.627806e-02   p_joint 3.254839e-04

Joint ci ratio: 1.231432e-01	ci left: 3.056628e-04	ci right 3.460809e-04	k: 1012	n:3110000
Cons ci ratio: 8.342553e-03	ci left: 6.601024e-02	ci right 6.656355e-02	k: 206151	n:3110000
KS ci ratio: 8.140689e-02	ci left: 7.146819e-04	ci right 7.756429e-04	k: 2316	n:3110000
SLC15A3   3110000 perm   5042 sec   (617 perm/sec)   p_kst 7.446945e-04   p_cons 6.628650e-02   p_joint 3.254019e-04

Joint ci ratio: 1.230825e-01	ci left: 3.049938e-04	ci right 3.453021e-04	k: 1013	n:3120000
Cons ci ratio: 8.329817e-03	ci left: 6.600113e-02	ci right 6.655352e-02	k: 206784	n:3120000
KS ci ratio: 8.124922e-02	ci left: 7.152172e-04	ci right 7.761002e-04	k: 2325	n:3120000
SLC15A3   3120000 perm   5073 sec   (615 perm/sec)   p_kst 7.451923e-04   p_cons 6.627692e-02   p_joint 3.246795e-04

Joint ci ratio: 1.228405e-01	ci left: 3.052580e-04	ci right 3.455161e-04	k: 1017	n:3130000
Cons ci ratio: 8.315637e-03	ci left: 6.601440e-02	ci right 6.656595e-02	k: 207487	n:3130000
KS ci ratio: 8.110985e-02	ci left: 7.154362e-04	ci right 7.762284e-04	k: 2333	n:3130000
SLC15A3   3130000 perm   5104 sec   (613 perm/sec)   p_kst 7.453674e-04   p_cons 6.628978e-02   p_joint 3.249201e-04

Joint ci ratio: 1.226599e-01	ci left: 3.052119e-04	ci right 3.454005e-04	k: 1020	n:3140000
Cons ci ratio: 8.303451e-03	ci left: 6.599898e-02	ci right 6.654959e-02	k: 208100	n:3140000
KS ci ratio: 8.104048e-02	ci left: 7.144058e-04	ci right 7.750560e-04	k: 2337	n:3140000
SLC15A3   3140000 perm   5135 sec   (611 perm/sec)   p_kst 7.442675e-04   p_cons 6.627389e-02   p_joint 3.248408e-04

Joint ci ratio: 1.224801e-01	ci left: 3.051662e-04	ci right 3.452855e-04	k: 1023	n:3150000
Cons ci ratio: 8.289872e-03	ci left: 6.600520e-02	ci right 6.655496e-02	k: 208781	n:3150000
KS ci ratio: 8.085046e-02	ci left: 7.155592e-04	ci right 7.761583e-04	k: 2348	n:3150000
SLC15A3   3150000 perm   5166 sec   (610 perm/sec)   p_kst 7.453968e-04   p_cons 6.627968e-02   p_joint 3.247619e-04

Joint ci ratio: 1.221228e-01	ci left: 3.060411e-04	ci right 3.461496e-04	k: 1029	n:3160000
Cons ci ratio: 8.276190e-03	ci left: 6.601391e-02	ci right 6.656283e-02	k: 209470	n:3160000
KS ci ratio: 8.066177e-02	ci left: 7.167056e-04	ci right 7.772533e-04	k: 2359	n:3160000
SLC15A3   3160000 perm   5196 sec   (608 perm/sec)   p_kst 7.465190e-04   p_cons 6.628797e-02   p_joint 3.256329e-04

Joint ci ratio: 1.215341e-01	ci left: 3.081342e-04	ci right 3.483083e-04	k: 1039	n:3170000
Cons ci ratio: 8.262702e-03	ci left: 6.602068e-02	ci right 6.656876e-02	k: 210153	n:3170000
KS ci ratio: 8.040655e-02	ci left: 7.190813e-04	ci right 7.796285e-04	k: 2374	n:3170000
SLC15A3   3170000 perm   5227 sec   (607 perm/sec)   p_kst 7.488959e-04   p_cons 6.629432e-02   p_joint 3.277603e-04

Joint ci ratio: 1.213010e-01	ci left: 3.083849e-04	ci right 3.485090e-04	k: 1043	n:3180000
Cons ci ratio: 8.249951e-03	ci left: 6.601736e-02	ci right 6.656456e-02	k: 210804	n:3180000
KS ci ratio: 8.027147e-02	ci left: 7.192852e-04	ci right 7.797431e-04	k: 2382	n:3180000
SLC15A3   3180000 perm   5258 sec   (605 perm/sec)   p_kst 7.490566e-04   p_cons 6.629057e-02   p_joint 3.279874e-04

Joint ci ratio: 1.212430e-01	ci left: 3.077221e-04	ci right 3.477395e-04	k: 1044	n:3190000
Cons ci ratio: 8.237300e-03	ci left: 6.601344e-02	ci right 6.655976e-02	k: 211453	n:3190000
KS ci ratio: 8.022104e-02	ci left: 7.179519e-04	ci right 7.782581e-04	k: 2385	n:3190000
SLC15A3   3190000 perm   5288 sec   (603 perm/sec)   p_kst 7.476489e-04   p_cons 6.628621e-02   p_joint 3.272727e-04

Joint ci ratio: 1.209540e-01	ci left: 3.082756e-04	ci right 3.482626e-04	k: 1049	n:3200000
Cons ci ratio: 8.224914e-03	ci left: 6.600642e-02	ci right 6.655186e-02	k: 212092	n:3200000
KS ci ratio: 8.013715e-02	ci left: 7.172395e-04	ci right 7.774199e-04	k: 2390	n:3200000
SLC15A3   3200000 perm   5320 sec   (602 perm/sec)   p_kst 7.468750e-04   p_cons 6.627875e-02   p_joint 3.278125e-04

Joint ci ratio: 1.209540e-01	ci left: 3.073153e-04	ci right 3.471777e-04	k: 1049	n:3210000
Cons ci ratio: 8.211882e-03	ci left: 6.601002e-02	ci right 6.655462e-02	k: 212765	n:3210000
KS ci ratio: 8.002011e-02	ci left: 7.171421e-04	ci right 7.772224e-04	k: 2397	n:3210000
SLC15A3   3210000 perm   5350 sec   (600 perm/sec)   p_kst 7.467290e-04   p_cons 6.628193e-02   p_joint 3.267913e-04

Joint ci ratio: 1.204388e-01	ci left: 3.090715e-04	ci right 3.489789e-04	k: 1058	n:3220000
Cons ci ratio: 8.198829e-03	ci left: 6.601484e-02	ci right 6.655861e-02	k: 213442	n:3220000
KS ci ratio: 7.988696e-02	ci left: 7.173498e-04	ci right 7.773428e-04	k: 2405	n:3220000
SLC15A3   3220000 perm   5382 sec   (598 perm/sec)   p_kst 7.468944e-04   p_cons 6.628634e-02   p_joint 3.285714e-04

Joint ci ratio: 1.203821e-01	ci left: 3.084149e-04	ci right 3.482174e-04	k: 1059	n:3230000
Cons ci ratio: 8.186534e-03	ci left: 6.600912e-02	ci right 6.655203e-02	k: 214085	n:3230000
KS ci ratio: 7.970492e-02	ci left: 7.184665e-04	ci right 7.784096e-04	k: 2416	n:3230000
SLC15A3   3230000 perm   5413 sec   (597 perm/sec)   p_kst 7.479876e-04   p_cons 6.628019e-02   p_joint 3.278638e-04

Joint ci ratio: 1.200428e-01	ci left: 3.092592e-04	ci right 3.490501e-04	k: 1065	n:3240000
Cons ci ratio: 8.173398e-03	ci left: 6.601699e-02	ci right 6.655909e-02	k: 214772	n:3240000
KS ci ratio: 7.947500e-02	ci left: 7.204840e-04	ci right 7.804141e-04	k: 2430	n:3240000
SLC15A3   3240000 perm   5445 sec   (595 perm/sec)   p_kst 7.500000e-04   p_cons 6.628765e-02   p_joint 3.287037e-04

Joint ci ratio: 1.199303e-01	ci left: 3.089045e-04	ci right 3.486100e-04	k: 1067	n:3250000
Cons ci ratio: 8.160345e-03	ci left: 6.602451e-02	ci right 6.656580e-02	k: 215458	n:3250000
KS ci ratio: 7.936083e-02	ci left: 7.203782e-04	ci right 7.802094e-04	k: 2437	n:3250000
SLC15A3   3250000 perm   5476 sec   (594 perm/sec)   p_kst 7.498462e-04   p_cons 6.629477e-02   p_joint 3.283077e-04

Joint ci ratio: 1.197064e-01	ci left: 3.091472e-04	ci right 3.488044e-04	k: 1071	n:3260000
Cons ci ratio: 8.147980e-03	ci left: 6.602249e-02	ci right 6.656294e-02	k: 216113	n:3260000
KS ci ratio: 7.910159e-02	ci left: 7.229792e-04	ci right 7.828213e-04	k: 2453	n:3260000
SLC15A3   3260000 perm   5507 sec   (592 perm/sec)   p_kst 7.524540e-04   p_cons 6.629233e-02   p_joint 3.285276e-04

Joint ci ratio: 1.194836e-01	ci left: 3.093885e-04	ci right 3.489975e-04	k: 1075	n:3270000
Cons ci ratio: 8.136033e-03	ci left: 6.601499e-02	ci right 6.655458e-02	k: 216750	n:3270000
KS ci ratio: 7.900508e-02	ci left: 7.225669e-04	ci right 7.822984e-04	k: 2459	n:3270000
SLC15A3   3270000 perm   5539 sec   (590 perm/sec)   p_kst 7.519878e-04   p_cons 6.628440e-02   p_joint 3.287462e-04

Joint ci ratio: 1.193174e-01	ci left: 3.093325e-04	ci right 3.488754e-04	k: 1078	n:3280000
Cons ci ratio: 8.124278e-03	ci left: 6.600541e-02	ci right 6.654414e-02	k: 217380	n:3280000
KS ci ratio: 7.889292e-02	ci left: 7.224560e-04	ci right 7.820897e-04	k: 2466	n:3280000
SLC15A3   3280000 perm   5572 sec   (589 perm/sec)   p_kst 7.518293e-04   p_cons 6.627439e-02   p_joint 3.286585e-04

Joint ci ratio: 1.190969e-01	ci left: 3.095719e-04	ci right 3.490671e-04	k: 1082	n:3290000
Cons ci ratio: 8.112295e-03	ci left: 6.600013e-02	ci right 6.653802e-02	k: 218024	n:3290000
KS ci ratio: 7.881313e-02	ci left: 7.217498e-04	ci right 7.812622e-04	k: 2471	n:3290000
SLC15A3   3290000 perm   5604 sec   (587 perm/sec)   p_kst 7.510638e-04   p_cons 6.626869e-02   p_joint 3.288754e-04

Joint ci ratio: 1.189871e-01	ci left: 3.092218e-04	ci right 3.486334e-04	k: 1084	n:3300000
Cons ci ratio: 8.100365e-03	ci left: 6.599489e-02	ci right 6.653194e-02	k: 218668	n:3300000
KS ci ratio: 7.871767e-02	ci left: 7.213451e-04	ci right 7.807487e-04	k: 2477	n:3300000
SLC15A3   3300000 perm   5635 sec   (586 perm/sec)   p_kst 7.506061e-04   p_cons 6.626303e-02   p_joint 3.284848e-04

Joint ci ratio: 1.187683e-01	ci left: 3.094601e-04	ci right 3.488245e-04	k: 1088	n:3310000
Cons ci ratio: 8.088172e-03	ci left: 6.599450e-02	ci right 6.653073e-02	k: 219328	n:3310000
KS ci ratio: 7.854349e-02	ci left: 7.224237e-04	ci right 7.817786e-04	k: 2488	n:3310000
SLC15A3   3310000 perm   5667 sec   (584 perm/sec)   p_kst 7.516616e-04   p_cons 6.626224e-02   p_joint 3.287009e-04

Joint ci ratio: 1.185508e-01	ci left: 3.096970e-04	ci right 3.490144e-04	k: 1092	n:3320000
Cons ci ratio: 8.075404e-03	ci left: 6.600373e-02	ci right 6.653919e-02	k: 220020	n:3320000
KS ci ratio: 7.840186e-02	ci left: 7.229054e-04	ci right 7.821878e-04	k: 2497	n:3320000
SLC15A3   3320000 perm   5699 sec   (583 perm/sec)   p_kst 7.521084e-04   p_cons 6.627108e-02   p_joint 3.289157e-04

Joint ci ratio: 1.183884e-01	ci left: 3.096412e-04	ci right 3.488939e-04	k: 1095	n:3330000
Cons ci ratio: 8.062756e-03	ci left: 6.601201e-02	ci right 6.654670e-02	k: 220709	n:3330000
KS ci ratio: 7.829224e-02	ci left: 7.227954e-04	ci right 7.819822e-04	k: 2504	n:3330000
SLC15A3   3330000 perm   5731 sec   (581 perm/sec)   p_kst 7.519520e-04   p_cons 6.627898e-02   p_joint 3.288288e-04

Joint ci ratio: 1.181730e-01	ci left: 3.098763e-04	ci right 3.490823e-04	k: 1099	n:3340000
Cons ci ratio: 8.051004e-03	ci left: 6.600740e-02	ci right 6.654126e-02	k: 221355	n:3340000
KS ci ratio: 7.810533e-02	ci left: 7.241539e-04	ci right 7.833040e-04	k: 2516	n:3340000
SLC15A3   3340000 perm   5763 sec   (580 perm/sec)   p_kst 7.532934e-04   p_cons 6.627395e-02   p_joint 3.290419e-04

Joint ci ratio: 1.180122e-01	ci left: 3.098204e-04	ci right 3.489622e-04	k: 1102	n:3350000
Cons ci ratio: 8.038935e-03	ci left: 6.600847e-02	ci right 6.654154e-02	k: 222020	n:3350000
KS ci ratio: 7.802790e-02	ci left: 7.234557e-04	ci right 7.824874e-04	k: 2521	n:3350000
SLC15A3   3350000 perm   5796 sec   (578 perm/sec)   p_kst 7.525373e-04   p_cons 6.627463e-02   p_joint 3.289552e-04

Joint ci ratio: 1.176924e-01	ci left: 3.106314e-04	ci right 3.497620e-04	k: 1108	n:3360000
Cons ci ratio: 8.026341e-03	ci left: 6.601845e-02	ci right 6.655075e-02	k: 222715	n:3360000
KS ci ratio: 7.796614e-02	ci left: 7.224698e-04	ci right 7.813723e-04	k: 2525	n:3360000
SLC15A3   3360000 perm   5829 sec   (576 perm/sec)   p_kst 7.514881e-04   p_cons 6.628423e-02   p_joint 3.297619e-04

Joint ci ratio: 1.174807e-01	ci left: 3.108617e-04	ci right 3.499459e-04	k: 1112	n:3370000
Cons ci ratio: 8.014862e-03	ci left: 6.601207e-02	ci right 6.654357e-02	k: 223355	n:3370000
KS ci ratio: 7.782760e-02	ci left: 7.229446e-04	ci right 7.817763e-04	k: 2534	n:3370000
SLC15A3   3370000 perm   5863 sec   (575 perm/sec)   p_kst 7.519288e-04   p_cons 6.627745e-02   p_joint 3.299703e-04

Joint ci ratio: 1.171653e-01	ci left: 3.116650e-04	ci right 3.507378e-04	k: 1118	n:3380000
Cons ci ratio: 8.003203e-03	ci left: 6.600929e-02	ci right 6.653998e-02	k: 224007	n:3380000
KS ci ratio: 7.770508e-02	ci left: 7.231265e-04	ci right 7.818762e-04	k: 2542	n:3380000
SLC15A3   3380000 perm   5895 sec   (573 perm/sec)   p_kst 7.520710e-04   p_cons 6.627426e-02   p_joint 3.307692e-04

Joint ci ratio: 1.170608e-01	ci left: 3.113183e-04	ci right 3.503104e-04	k: 1120	n:3390000
Cons ci ratio: 7.990529e-03	ci left: 6.602300e-02	ci right 6.655296e-02	k: 224715	n:3390000
KS ci ratio: 7.756792e-02	ci left: 7.235967e-04	ci right 7.822762e-04	k: 2551	n:3390000
SLC15A3   3390000 perm   5928 sec   (572 perm/sec)   p_kst 7.525074e-04   p_cons 6.628761e-02   p_joint 3.303835e-04

Joint ci ratio: 1.168525e-01	ci left: 3.115448e-04	ci right 3.504910e-04	k: 1124	n:3400000
Cons ci ratio: 7.979430e-03	ci left: 6.601315e-02	ci right 6.654229e-02	k: 225343	n:3400000
KS ci ratio: 7.740125e-02	ci left: 7.246411e-04	ci right 7.832734e-04	k: 2562	n:3400000
SLC15A3   3400000 perm   5962 sec   (570 perm/sec)   p_kst 7.535294e-04   p_cons 6.627735e-02   p_joint 3.305882e-04

Joint ci ratio: 1.166970e-01	ci left: 3.114852e-04	ci right 3.503686e-04	k: 1127	n:3410000
Cons ci ratio: 7.968095e-03	ci left: 6.600775e-02	ci right 6.653609e-02	k: 225986	n:3410000
KS ci ratio: 7.737113e-02	ci left: 7.230912e-04	ci right 7.815742e-04	k: 2564	n:3410000
SLC15A3   3410000 perm   5995 sec   (569 perm/sec)   p_kst 7.519062e-04   p_cons 6.627155e-02   p_joint 3.304985e-04

Joint ci ratio: 1.164906e-01	ci left: 3.117099e-04	ci right 3.505478e-04	k: 1131	n:3420000
Cons ci ratio: 7.956714e-03	ci left: 6.600384e-02	ci right 6.653140e-02	k: 226634	n:3420000
KS ci ratio: 7.723573e-02	ci left: 7.235576e-04	ci right 7.819714e-04	k: 2573	n:3420000
SLC15A3   3420000 perm   6028 sec   (567 perm/sec)   p_kst 7.523392e-04   p_cons 6.626725e-02   p_joint 3.307018e-04

Joint ci ratio: 1.163879e-01	ci left: 3.113672e-04	ci right 3.501259e-04	k: 1133	n:3430000
Cons ci ratio: 7.945213e-03	ci left: 6.600258e-02	ci right 6.652935e-02	k: 227291	n:3430000
KS ci ratio: 7.714588e-02	ci left: 7.231636e-04	ci right 7.814746e-04	k: 2579	n:3430000
SLC15A3   3430000 perm   6061 sec   (566 perm/sec)   p_kst 7.518950e-04   p_cons 6.626560e-02   p_joint 3.303207e-04

Joint ci ratio: 1.162342e-01	ci left: 3.113088e-04	ci right 3.500055e-04	k: 1136	n:3440000
Cons ci ratio: 7.934135e-03	ci left: 6.599551e-02	ci right 6.652150e-02	k: 227928	n:3440000
KS ci ratio: 7.708619e-02	ci left: 7.222018e-04	ci right 7.803881e-04	k: 2583	n:3440000
SLC15A3   3440000 perm   6095 sec   (564 perm/sec)   p_kst 7.508721e-04   p_cons 6.625814e-02   p_joint 3.302326e-04

Joint ci ratio: 1.160812e-01	ci left: 3.112508e-04	ci right 3.498858e-04	k: 1139	n:3450000
Cons ci ratio: 7.922768e-03	ci left: 6.599370e-02	ci right 6.651891e-02	k: 228583	n:3450000
KS ci ratio: 7.693743e-02	ci left: 7.229512e-04	ci right 7.810805e-04	k: 2593	n:3450000
SLC15A3   3450000 perm   6129 sec   (563 perm/sec)   p_kst 7.515942e-04   p_cons 6.625594e-02   p_joint 3.301449e-04

Joint ci ratio: 1.158274e-01	ci left: 3.117544e-04	ci right 3.503616e-04	k: 1144	n:3460000
Cons ci ratio: 7.910545e-03	ci left: 6.600603e-02	ci right 6.653053e-02	k: 229287	n:3460000
KS ci ratio: 7.683384e-02	ci left: 7.228459e-04	ci right 7.808850e-04	k: 2600	n:3460000
SLC15A3   3460000 perm   6163 sec   (561 perm/sec)   p_kst 7.514451e-04   p_cons 6.626792e-02   p_joint 3.306358e-04

Joint ci ratio: 1.156256e-01	ci left: 3.119753e-04	ci right 3.505380e-04	k: 1148	n:3470000
Cons ci ratio: 7.898618e-03	ci left: 6.601456e-02	ci right 6.653833e-02	k: 229978	n:3470000
KS ci ratio: 7.673066e-02	ci left: 7.227414e-04	ci right 7.806906e-04	k: 2607	n:3470000
SLC15A3   3470000 perm   6196 sec   (560 perm/sec)   p_kst 7.512968e-04   p_cons 6.627608e-02   p_joint 3.308357e-04

Joint ci ratio: 1.154750e-01	ci left: 3.119160e-04	ci right 3.504176e-04	k: 1151	n:3480000
Cons ci ratio: 7.886762e-03	ci left: 6.602275e-02	ci right 6.654579e-02	k: 230668	n:3480000
KS ci ratio: 7.665724e-02	ci left: 7.220737e-04	ci right 7.799116e-04	k: 2612	n:3480000
SLC15A3   3480000 perm   6230 sec   (559 perm/sec)   p_kst 7.505747e-04   p_cons 6.628391e-02   p_joint 3.307471e-04

Joint ci ratio: 1.153749e-01	ci left: 3.115788e-04	ci right 3.500032e-04	k: 1153	n:3490000
Cons ci ratio: 7.875124e-03	ci left: 6.602832e-02	ci right 6.655063e-02	k: 231349	n:3490000
KS ci ratio: 7.658403e-02	ci left: 7.214100e-04	ci right 7.791370e-04	k: 2617	n:3490000
SLC15A3   3490000 perm   6263 sec   (557 perm/sec)   p_kst 7.498567e-04   p_cons 6.628911e-02   p_joint 3.303725e-04

Joint ci ratio: 1.152751e-01	ci left: 3.112435e-04	ci right 3.495911e-04	k: 1155	n:3500000
Cons ci ratio: 7.864209e-03	ci left: 6.602330e-02	ci right 6.654485e-02	k: 231993	n:3500000
KS ci ratio: 7.642361e-02	ci left: 7.224316e-04	ci right 7.801139e-04	k: 2628	n:3500000
SLC15A3   3500000 perm   6297 sec   (556 perm/sec)   p_kst 7.508571e-04   p_cons 6.628371e-02   p_joint 3.300000e-04

Joint ci ratio: 1.152253e-01	ci left: 3.106335e-04	ci right 3.488882e-04	k: 1156	n:3510000
Cons ci ratio: 7.853321e-03	ci left: 6.601860e-02	ci right 6.653938e-02	k: 232638	n:3510000
KS ci ratio: 7.630759e-02	ci left: 7.226090e-04	ci right 7.802140e-04	k: 2636	n:3510000
SLC15A3   3510000 perm   6331 sec   (554 perm/sec)   p_kst 7.509972e-04   p_cons 6.627863e-02   p_joint 3.293447e-04

Joint ci ratio: 1.149276e-01	ci left: 3.114065e-04	ci right 3.496506e-04	k: 1162	n:3520000
Cons ci ratio: 7.842064e-03	ci left: 6.602045e-02	ci right 6.654049e-02	k: 233306	n:3520000
KS ci ratio: 7.623538e-02	ci left: 7.219495e-04	ci right 7.794451e-04	k: 2641	n:3520000
SLC15A3   3520000 perm   6364 sec   (553 perm/sec)   p_kst 7.502841e-04   p_cons 6.628011e-02   p_joint 3.301136e-04

Joint ci ratio: 1.147305e-01	ci left: 3.116249e-04	ci right 3.498258e-04	k: 1166	n:3530000
Cons ci ratio: 7.831106e-03	ci left: 6.601833e-02	ci right 6.653763e-02	k: 233960	n:3530000
KS ci ratio: 7.613459e-02	ci left: 7.218496e-04	ci right 7.792578e-04	k: 2648	n:3530000
SLC15A3   3530000 perm   6397 sec   (552 perm/sec)   p_kst 7.501416e-04   p_cons 6.627762e-02   p_joint 3.303116e-04

Joint ci ratio: 1.144855e-01	ci left: 3.121165e-04	ci right 3.502905e-04	k: 1171	n:3540000
Cons ci ratio: 7.820301e-03	ci left: 6.601452e-02	ci right 6.653308e-02	k: 234608	n:3540000
KS ci ratio: 7.594840e-02	ci left: 7.234129e-04	ci right 7.807986e-04	k: 2661	n:3540000
SLC15A3   3540000 perm   6432 sec   (550 perm/sec)   p_kst 7.516949e-04   p_cons 6.627345e-02   p_joint 3.307910e-04

Joint ci ratio: 1.142906e-01	ci left: 3.123319e-04	ci right 3.504627e-04	k: 1175	n:3550000
Cons ci ratio: 7.809630e-03	ci left: 6.600934e-02	ci right 6.652714e-02	k: 235251	n:3550000
KS ci ratio: 7.580612e-02	ci left: 7.241386e-04	ci right 7.814695e-04	k: 2671	n:3550000
SLC15A3   3550000 perm   6467 sec   (549 perm/sec)   p_kst 7.523944e-04   p_cons 6.626789e-02   p_joint 3.309859e-04

Joint ci ratio: 1.140001e-01	ci left: 3.130918e-04	ci right 3.512118e-04	k: 1181	n:3560000
Cons ci ratio: 7.798842e-03	ci left: 6.600671e-02	ci right 6.652377e-02	k: 235903	n:3560000
KS ci ratio: 7.566464e-02	ci left: 7.248603e-04	ci right 7.821365e-04	k: 2681	n:3560000
SLC15A3   3560000 perm   6502 sec   (548 perm/sec)   p_kst 7.530899e-04   p_cons 6.626489e-02   p_joint 3.317416e-04

Joint ci ratio: 1.138557e-01	ci left: 3.130312e-04	ci right 3.510923e-04	k: 1184	n:3570000
Cons ci ratio: 7.787994e-03	ci left: 6.600577e-02	ci right 6.652210e-02	k: 236561	n:3570000
KS ci ratio: 7.548187e-02	ci left: 7.264026e-04	ci right 7.836559e-04	k: 2694	n:3570000
SLC15A3   3570000 perm   6535 sec   (546 perm/sec)   p_kst 7.546218e-04   p_cons 6.626359e-02   p_joint 3.316527e-04

Joint ci ratio: 1.136640e-01	ci left: 3.132423e-04	ci right 3.512607e-04	k: 1188	n:3580000
Cons ci ratio: 7.777261e-03	ci left: 6.600372e-02	ci right 6.651932e-02	k: 237215	n:3580000
KS ci ratio: 7.541197e-02	ci left: 7.257438e-04	ci right 7.828899e-04	k: 2699	n:3580000
SLC15A3   3580000 perm   6570 sec   (545 perm/sec)   p_kst 7.539106e-04   p_cons 6.626117e-02   p_joint 3.318436e-04

Joint ci ratio: 1.135685e-01	ci left: 3.129111e-04	ci right 3.508551e-04	k: 1190	n:3590000
Cons ci ratio: 7.766327e-03	ci left: 6.600558e-02	ci right 6.652047e-02	k: 237883	n:3590000
KS ci ratio: 7.525879e-02	ci left: 7.267286e-04	ci right 7.838309e-04	k: 2710	n:3590000
SLC15A3   3590000 perm   6604 sec   (544 perm/sec)   p_kst 7.548747e-04   p_cons 6.626267e-02   p_joint 3.314763e-04

Joint ci ratio: 1.134258e-01	ci left: 3.128515e-04	ci right 3.507375e-04	k: 1193	n:3600000
Cons ci ratio: 7.755126e-03	ci left: 6.601242e-02	ci right 6.652661e-02	k: 238569	n:3600000
KS ci ratio: 7.512034e-02	ci left: 7.274355e-04	ci right 7.844836e-04	k: 2720	n:3600000
SLC15A3   3600000 perm   6639 sec   (542 perm/sec)   p_kst 7.555556e-04   p_cons 6.626917e-02   p_joint 3.313889e-04

Joint ci ratio: 1.132836e-01	ci left: 3.127924e-04	ci right 3.506205e-04	k: 1196	n:3610000
Cons ci ratio: 7.744355e-03	ci left: 6.601314e-02	ci right 6.652662e-02	k: 239233	n:3610000
KS ci ratio: 7.505144e-02	ci left: 7.267794e-04	ci right 7.837216e-04	k: 2725	n:3610000
SLC15A3   3610000 perm   6673 sec   (541 perm/sec)   p_kst 7.548476e-04   p_cons 6.626953e-02   p_joint 3.313019e-04

Joint ci ratio: 1.131419e-01	ci left: 3.127336e-04	ci right 3.505042e-04	k: 1199	n:3620000
Cons ci ratio: 7.733801e-03	ci left: 6.601109e-02	ci right 6.652386e-02	k: 239887	n:3620000
KS ci ratio: 7.494155e-02	ci left: 7.269403e-04	ci right 7.838080e-04	k: 2733	n:3620000
SLC15A3   3620000 perm   6708 sec   (540 perm/sec)   p_kst 7.549724e-04   p_cons 6.626713e-02   p_joint 3.312155e-04

Joint ci ratio: 1.130007e-01	ci left: 3.126751e-04	ci right 3.503884e-04	k: 1202	n:3630000
Cons ci ratio: 7.722826e-03	ci left: 6.601648e-02	ci right 6.652856e-02	k: 240568	n:3630000
KS ci ratio: 7.487315e-02	ci left: 7.262893e-04	ci right 7.830519e-04	k: 2738	n:3630000
SLC15A3   3630000 perm   6743 sec   (538 perm/sec)   p_kst 7.542700e-04   p_cons 6.627218e-02   p_joint 3.311295e-04

Joint ci ratio: 1.128133e-01	ci left: 3.128840e-04	ci right 3.505557e-04	k: 1206	n:3640000
Cons ci ratio: 7.711812e-03	ci left: 6.602322e-02	ci right 6.653461e-02	k: 241254	n:3640000
KS ci ratio: 7.473681e-02	ci left: 7.269899e-04	ci right 7.836993e-04	k: 2748	n:3640000
SLC15A3   3640000 perm   6779 sec   (537 perm/sec)   p_kst 7.549451e-04   p_cons 6.627857e-02   p_joint 3.313187e-04

Joint ci ratio: 1.124875e-01	ci left: 3.138906e-04	ci right 3.515671e-04	k: 1213	n:3650000
Cons ci ratio: 7.700641e-03	ci left: 6.603320e-02	ci right 6.654393e-02	k: 241952	n:3650000
KS ci ratio: 7.466897e-02	ci left: 7.263424e-04	ci right 7.829476e-04	k: 2753	n:3650000
SLC15A3   3650000 perm   6813 sec   (536 perm/sec)   p_kst 7.542466e-04   p_cons 6.628822e-02   p_joint 3.323288e-04

Joint ci ratio: 1.123950e-01	ci left: 3.135640e-04	ci right 3.511683e-04	k: 1215	n:3660000
Cons ci ratio: 7.689959e-03	ci left: 6.603603e-02	ci right 6.654607e-02	k: 242624	n:3660000
KS ci ratio: 7.454724e-02	ci left: 7.267710e-04	ci right 7.833133e-04	k: 2762	n:3660000
SLC15A3   3660000 perm   6847 sec   (535 perm/sec)   p_kst 7.546448e-04   p_cons 6.629071e-02   p_joint 3.319672e-04

Joint ci ratio: 1.122106e-01	ci left: 3.137689e-04	ci right 3.513320e-04	k: 1219	n:3670000
Cons ci ratio: 7.678966e-03	ci left: 6.604457e-02	ci right 6.655394e-02	k: 243317	n:3670000
KS ci ratio: 7.445299e-02	ci left: 7.266625e-04	ci right 7.831218e-04	k: 2769	n:3670000
SLC15A3   3670000 perm   6882 sec   (533 perm/sec)   p_kst 7.544959e-04   p_cons 6.629891e-02   p_joint 3.321526e-04

Joint ci ratio: 1.121188e-01	ci left: 3.134445e-04	ci right 3.509360e-04	k: 1221	n:3680000
Cons ci ratio: 7.668862e-03	ci left: 6.603949e-02	ci right 6.654815e-02	k: 243960	n:3680000
KS ci ratio: 7.435910e-02	ci left: 7.265546e-04	ci right 7.829314e-04	k: 2776	n:3680000
SLC15A3   3680000 perm   6917 sec   (532 perm/sec)   p_kst 7.543478e-04   p_cons 6.629348e-02   p_joint 3.317935e-04

Joint ci ratio: 1.119814e-01	ci left: 3.133853e-04	ci right 3.508207e-04	k: 1224	n:3690000
Cons ci ratio: 7.658664e-03	ci left: 6.603661e-02	ci right 6.654456e-02	k: 244611	n:3690000
KS ci ratio: 7.430564e-02	ci left: 7.256495e-04	ci right 7.819138e-04	k: 2780	n:3690000
SLC15A3   3690000 perm   6952 sec   (531 perm/sec)   p_kst 7.533875e-04   p_cons 6.629024e-02   p_joint 3.317073e-04

Joint ci ratio: 1.117990e-01	ci left: 3.135891e-04	ci right 3.509839e-04	k: 1228	n:3700000
Cons ci ratio: 7.648440e-03	ci left: 6.603482e-02	ci right 6.654208e-02	k: 245266	n:3700000
KS ci ratio: 7.423896e-02	ci left: 7.250145e-04	ci right 7.811769e-04	k: 2785	n:3700000
SLC15A3   3700000 perm   6988 sec   (529 perm/sec)   p_kst 7.527027e-04   p_cons 6.628811e-02   p_joint 3.318919e-04

Joint ci ratio: 1.116628e-01	ci left: 3.135299e-04	ci right 3.508691e-04	k: 1231	n:3710000
Cons ci ratio: 7.638821e-03	ci left: 6.602389e-02	ci right 6.653043e-02	k: 245887	n:3710000
KS ci ratio: 7.414588e-02	ci left: 7.249121e-04	ci right 7.809931e-04	k: 2792	n:3710000
SLC15A3   3710000 perm   7023 sec   (528 perm/sec)   p_kst 7.525606e-04   p_cons 6.627682e-02   p_joint 3.318059e-04

Joint ci ratio: 1.115723e-01	ci left: 3.132097e-04	ci right 3.504785e-04	k: 1233	n:3720000
Cons ci ratio: 7.628312e-03	ci left: 6.602805e-02	ci right 6.653392e-02	k: 246564	n:3720000
KS ci ratio: 7.405314e-02	ci left: 7.248103e-04	ci right 7.808103e-04	k: 2799	n:3720000
SLC15A3   3720000 perm   7058 sec   (527 perm/sec)   p_kst 7.524194e-04   p_cons 6.628065e-02   p_joint 3.314516e-04

Joint ci ratio: 1.114820e-01	ci left: 3.128912e-04	ci right 3.500900e-04	k: 1235	n:3730000
Cons ci ratio: 7.618191e-03	ci left: 6.602656e-02	ci right 6.653175e-02	k: 247220	n:3730000
KS ci ratio: 7.388177e-02	ci left: 7.262879e-04	ci right 7.822666e-04	k: 2812	n:3730000
SLC15A3   3730000 perm   7093 sec   (526 perm/sec)   p_kst 7.538874e-04   p_cons 6.627882e-02   p_joint 3.310992e-04

Joint ci ratio: 1.113919e-01	ci left: 3.125745e-04	ci right 3.497036e-04	k: 1237	n:3740000
Cons ci ratio: 7.608292e-03	ci left: 6.602215e-02	ci right 6.652665e-02	k: 247865	n:3740000
KS ci ratio: 7.384245e-02	ci left: 7.251333e-04	ci right 7.809920e-04	k: 2815	n:3740000
SLC15A3   3740000 perm   7128 sec   (525 perm/sec)   p_kst 7.526738e-04   p_cons 6.627406e-02   p_joint 3.307487e-04

Joint ci ratio: 1.113470e-01	ci left: 3.120002e-04	ci right 3.490452e-04	k: 1238	n:3750000
Cons ci ratio: 7.598939e-03	ci left: 6.600952e-02	ci right 6.651329e-02	k: 248479	n:3750000
KS ci ratio: 7.379010e-02	ci left: 7.242465e-04	ci right 7.799957e-04	k: 2819	n:3750000
SLC15A3   3750000 perm   7164 sec   (523 perm/sec)   p_kst 7.517333e-04   p_cons 6.626107e-02   p_joint 3.301333e-04

Joint ci ratio: 1.112125e-01	ci left: 3.119461e-04	ci right 3.489369e-04	k: 1241	n:3760000
Cons ci ratio: 7.588968e-03	ci left: 6.600756e-02	ci right 6.651066e-02	k: 249133	n:3760000
KS ci ratio: 7.365959e-02	ci left: 7.249309e-04	ci right 7.806298e-04	k: 2829	n:3760000
SLC15A3   3760000 perm   7200 sec   (522 perm/sec)   p_kst 7.523936e-04   p_cons 6.625878e-02   p_joint 3.300532e-04

Joint ci ratio: 1.109893e-01	ci left: 3.124080e-04	ci right 3.493745e-04	k: 1246	n:3770000
Cons ci ratio: 7.579361e-03	ci left: 6.600033e-02	ci right 6.650273e-02	k: 249767	n:3770000
KS ci ratio: 7.356866e-02	ci left: 7.248306e-04	ci right 7.804501e-04	k: 2836	n:3770000
SLC15A3   3770000 perm   7235 sec   (521 perm/sec)   p_kst 7.522546e-04   p_cons 6.625119e-02   p_joint 3.305040e-04

Joint ci ratio: 1.108117e-01	ci left: 3.126104e-04	ci right 3.495377e-04	k: 1250	n:3780000
Cons ci ratio: 7.569483e-03	ci left: 6.599815e-02	ci right 6.649987e-02	k: 250420	n:3780000
KS ci ratio: 7.350395e-02	ci left: 7.242115e-04	ci right 7.797325e-04	k: 2841	n:3780000
SLC15A3   3780000 perm   7272 sec   (520 perm/sec)   p_kst 7.515873e-04   p_cons 6.624868e-02   p_joint 3.306878e-04

Joint ci ratio: 1.107232e-01	ci left: 3.122986e-04	ci right 3.491578e-04	k: 1252	n:3790000
Cons ci ratio: 7.560207e-03	ci left: 6.598676e-02	ci right 6.648778e-02	k: 251038	n:3790000
KS ci ratio: 7.346522e-02	ci left: 7.230776e-04	ci right 7.784813e-04	k: 2844	n:3790000
SLC15A3   3790000 perm   7308 sec   (519 perm/sec)   p_kst 7.503958e-04   p_cons 6.623694e-02   p_joint 3.303430e-04

Joint ci ratio: 1.103714e-01	ci left: 3.135239e-04	ci right 3.504024e-04	k: 1260	n:3800000
Cons ci ratio: 7.549617e-03	ci left: 6.599750e-02	ci right 6.649790e-02	k: 251740	n:3800000
KS ci ratio: 7.332358e-02	ci left: 7.240164e-04	ci right 7.793805e-04	k: 2855	n:3800000
SLC15A3   3800000 perm   7345 sec   (517 perm/sec)   p_kst 7.513158e-04   p_cons 6.624737e-02   p_joint 3.315789e-04

Joint ci ratio: 1.102840e-01	ci left: 3.132114e-04	ci right 3.500221e-04	k: 1262	n:3810000
Cons ci ratio: 7.539438e-03	ci left: 6.600216e-02	ci right 6.650191e-02	k: 252419	n:3810000
KS ci ratio: 7.318275e-02	ci left: 7.249504e-04	ci right 7.802749e-04	k: 2866	n:3810000
SLC15A3   3810000 perm   7382 sec   (516 perm/sec)   p_kst 7.522310e-04   p_cons 6.625171e-02   p_joint 3.312336e-04

Joint ci ratio: 1.101097e-01	ci left: 3.134098e-04	ci right 3.501818e-04	k: 1266	n:3820000
Cons ci ratio: 7.529890e-03	ci left: 6.599712e-02	ci right 6.649620e-02	k: 253061	n:3820000
KS ci ratio: 7.306813e-02	ci left: 7.253655e-04	ci right 7.806314e-04	k: 2875	n:3820000
SLC15A3   3820000 perm   7418 sec   (515 perm/sec)   p_kst 7.526178e-04   p_cons 6.624634e-02   p_joint 3.314136e-04

Joint ci ratio: 1.098499e-01	ci left: 3.141150e-04	ci right 3.508771e-04	k: 1272	n:3830000
Cons ci ratio: 7.519696e-03	ci left: 6.600332e-02	ci right 6.650177e-02	k: 253746	n:3830000
KS ci ratio: 7.301741e-02	ci left: 7.244969e-04	ci right 7.796566e-04	k: 2879	n:3830000
SLC15A3   3830000 perm   7454 sec   (514 perm/sec)   p_kst 7.516971e-04   p_cons 6.625222e-02   p_joint 3.321149e-04

Joint ci ratio: 1.098499e-01	ci left: 3.132969e-04	ci right 3.499634e-04	k: 1272	n:3840000
Cons ci ratio: 7.509938e-03	ci left: 6.600299e-02	ci right 6.650079e-02	k: 254406	n:3840000
KS ci ratio: 7.292884e-02	ci left: 7.243999e-04	ci right 7.794824e-04	k: 2886	n:3840000
SLC15A3   3840000 perm   7491 sec   (513 perm/sec)   p_kst 7.515625e-04   p_cons 6.625156e-02   p_joint 3.312500e-04

Joint ci ratio: 1.098068e-01	ci left: 3.127358e-04	ci right 3.493213e-04	k: 1273	n:3850000
Cons ci ratio: 7.500030e-03	ci left: 6.600577e-02	ci right 6.650293e-02	k: 255078	n:3850000
KS ci ratio: 7.284059e-02	ci left: 7.243034e-04	ci right 7.793091e-04	k: 2893	n:3850000
SLC15A3   3850000 perm   7528 sec   (511 perm/sec)   p_kst 7.514286e-04   p_cons 6.625403e-02   p_joint 3.306494e-04

Joint ci ratio: 1.097638e-01	ci left: 3.121775e-04	ci right 3.486825e-04	k: 1274	n:3860000
Cons ci ratio: 7.490662e-03	ci left: 6.600027e-02	ci right 6.649676e-02	k: 255718	n:3860000
KS ci ratio: 7.276521e-02	ci left: 7.239530e-04	ci right 7.788729e-04	k: 2899	n:3860000
SLC15A3   3860000 perm   7565 sec   (510 perm/sec)   p_kst 7.510363e-04   p_cons 6.624819e-02   p_joint 3.300518e-04

Joint ci ratio: 1.097639e-01	ci left: 3.113709e-04	ci right 3.477815e-04	k: 1274	n:3870000
Cons ci ratio: 7.481688e-03	ci left: 6.598885e-02	ci right 6.648466e-02	k: 256335	n:3870000
KS ci ratio: 7.265255e-02	ci left: 7.243657e-04	ci right 7.792281e-04	k: 2908	n:3870000
SLC15A3   3870000 perm   7601 sec   (509 perm/sec)   p_kst 7.514212e-04   p_cons 6.623643e-02   p_joint 3.291990e-04

Joint ci ratio: 1.096350e-01	ci left: 3.113203e-04	ci right 3.476796e-04	k: 1277	n:3880000
Cons ci ratio: 7.471953e-03	ci left: 6.599062e-02	ci right 6.648580e-02	k: 257003	n:3880000
KS ci ratio: 7.255285e-02	ci left: 7.245232e-04	ci right 7.793191e-04	k: 2916	n:3880000
SLC15A3   3880000 perm   7638 sec   (508 perm/sec)   p_kst 7.515464e-04   p_cons 6.623789e-02   p_joint 3.291237e-04

Joint ci ratio: 1.095921e-01	ci left: 3.107701e-04	ci right 3.470499e-04	k: 1278	n:3890000
Cons ci ratio: 7.461775e-03	ci left: 6.600034e-02	ci right 6.649491e-02	k: 257702	n:3890000
KS ci ratio: 7.246596e-02	ci left: 7.244275e-04	ci right 7.791478e-04	k: 2923	n:3890000
SLC15A3   3890000 perm   7675 sec   (507 perm/sec)   p_kst 7.514139e-04   p_cons 6.624730e-02   p_joint 3.285347e-04

Joint ci ratio: 1.092934e-01	ci left: 3.117190e-04	ci right 3.480040e-04	k: 1285	n:3900000
Cons ci ratio: 7.452256e-03	ci left: 6.599977e-02	ci right 6.649370e-02	k: 258361	n:3900000
KS ci ratio: 7.235468e-02	ci left: 7.248359e-04	ci right 7.794995e-04	k: 2932	n:3900000
SLC15A3   3900000 perm   7713 sec   (506 perm/sec)   p_kst 7.517949e-04   p_cons 6.624641e-02   p_joint 3.294872e-04

Joint ci ratio: 1.091238e-01	ci left: 3.119168e-04	ci right 3.481649e-04	k: 1289	n:3910000
Cons ci ratio: 7.443297e-03	ci left: 6.599052e-02	ci right 6.648378e-02	k: 258986	n:3910000
KS ci ratio: 7.224391e-02	ci left: 7.252423e-04	ci right 7.798493e-04	k: 2941	n:3910000
SLC15A3   3910000 perm   7750 sec   (505 perm/sec)   p_kst 7.521739e-04   p_cons 6.623683e-02   p_joint 3.296675e-04

Joint ci ratio: 1.089129e-01	ci left: 3.123618e-04	ci right 3.485870e-04	k: 1294	n:3920000
Cons ci ratio: 7.433527e-03	ci left: 6.599532e-02	ci right 6.648797e-02	k: 259666	n:3920000
KS ci ratio: 7.215812e-02	ci left: 7.251457e-04	ci right 7.796778e-04	k: 2948	n:3920000
SLC15A3   3920000 perm   7788 sec   (503 perm/sec)   p_kst 7.520408e-04   p_cons 6.624133e-02   p_joint 3.301020e-04

Joint ci ratio: 1.088289e-01	ci left: 3.120621e-04	ci right 3.482228e-04	k: 1296	n:3930000
Cons ci ratio: 7.423673e-03	ci left: 6.600213e-02	ci right 6.649418e-02	k: 260354	n:3930000
KS ci ratio: 7.204825e-02	ci left: 7.255493e-04	ci right 7.800252e-04	k: 2957	n:3930000
SLC15A3   3930000 perm   7825 sec   (502 perm/sec)   p_kst 7.524173e-04   p_cons 6.624784e-02   p_joint 3.297710e-04

Joint ci ratio: 1.087451e-01	ci left: 3.117638e-04	ci right 3.478604e-04	k: 1298	n:3940000
Cons ci ratio: 7.413432e-03	ci left: 6.601600e-02	ci right 6.650748e-02	k: 261070	n:3940000
KS ci ratio: 7.190251e-02	ci left: 7.266987e-04	ci right 7.811459e-04	k: 2969	n:3940000
SLC15A3   3940000 perm   7863 sec   (501 perm/sec)   p_kst 7.535533e-04   p_cons 6.626142e-02   p_joint 3.294416e-04

Joint ci ratio: 1.086615e-01	ci left: 3.114671e-04	ci right 3.474998e-04	k: 1300	n:3950000
Cons ci ratio: 7.404566e-03	ci left: 6.600757e-02	ci right 6.649839e-02	k: 261698	n:3950000
KS ci ratio: 7.183000e-02	ci left: 7.263506e-04	ci right 7.807146e-04	k: 2975	n:3950000
SLC15A3   3950000 perm   7901 sec   (500 perm/sec)   p_kst 7.531646e-04   p_cons 6.625266e-02   p_joint 3.291139e-04

Joint ci ratio: 1.084533e-01	ci left: 3.119089e-04	ci right 3.479192e-04	k: 1305	n:3960000
Cons ci ratio: 7.395642e-03	ci left: 6.600069e-02	ci right 6.649086e-02	k: 262332	n:3960000
KS ci ratio: 7.174568e-02	ci left: 7.262524e-04	ci right 7.805425e-04	k: 2982	n:3960000
SLC15A3   3960000 perm   7937 sec   (499 perm/sec)   p_kst 7.530303e-04   p_cons 6.624545e-02   p_joint 3.295455e-04

Joint ci ratio: 1.082876e-01	ci left: 3.121035e-04	ci right 3.480777e-04	k: 1309	n:3970000
Cons ci ratio: 7.386043e-03	ci left: 6.600566e-02	ci right 6.649523e-02	k: 263013	n:3970000
KS ci ratio: 7.167365e-02	ci left: 7.259072e-04	ci right 7.801149e-04	k: 2988	n:3970000
SLC15A3   3970000 perm   7975 sec   (498 perm/sec)   p_kst 7.526448e-04   p_cons 6.625013e-02   p_joint 3.297229e-04

Joint ci ratio: 1.080404e-01	ci left: 3.127861e-04	ci right 3.487514e-04	k: 1315	n:3980000
Cons ci ratio: 7.375687e-03	ci left: 6.602390e-02	ci right 6.651291e-02	k: 263747	n:3980000
KS ci ratio: 7.161380e-02	ci left: 7.253171e-04	ci right 7.794336e-04	k: 2993	n:3980000
SLC15A3   3980000 perm   8013 sec   (497 perm/sec)   p_kst 7.520101e-04   p_cons 6.626809e-02   p_joint 3.304020e-04

Joint ci ratio: 1.079584e-01	ci left: 3.124899e-04	ci right 3.483922e-04	k: 1317	n:3990000
Cons ci ratio: 7.366299e-03	ci left: 6.602654e-02	ci right 6.651495e-02	k: 264419	n:3990000
KS ci ratio: 7.145878e-02	ci left: 7.266992e-04	ci right 7.807965e-04	k: 3006	n:3990000
SLC15A3   3990000 perm   8052 sec   (496 perm/sec)   p_kst 7.533835e-04   p_cons 6.627043e-02   p_joint 3.300752e-04

Joint ci ratio: 1.077950e-01	ci left: 3.126817e-04	ci right 3.485481e-04	k: 1321	n:4000000
Cons ci ratio: 7.356517e-03	ci left: 6.603640e-02	ci right 6.652423e-02	k: 265120	n:4000000
KS ci ratio: 7.136391e-02	ci left: 7.268467e-04	ci right 7.808802e-04	k: 3014	n:4000000
SLC15A3   4000000 perm   8089 sec   (494 perm/sec)   p_kst 7.535000e-04   p_cons 6.628000e-02   p_joint 3.302500e-04

Joint ci ratio: 1.076323e-01	ci left: 3.128725e-04	ci right 3.487033e-04	k: 1325	n:4010000
Cons ci ratio: 7.348046e-03	ci left: 6.602480e-02	ci right 6.651198e-02	k: 265735	n:4010000
KS ci ratio: 7.130483e-02	ci left: 7.262588e-04	ci right 7.802020e-04	k: 3019	n:4010000
SLC15A3   4010000 perm   8127 sec   (493 perm/sec)   p_kst 7.528678e-04   p_cons 6.626808e-02   p_joint 3.304239e-04

Joint ci ratio: 1.074299e-01	ci left: 3.133046e-04	ci right 3.491131e-04	k: 1330	n:4020000
Cons ci ratio: 7.338911e-03	ci left: 6.602494e-02	ci right 6.651151e-02	k: 266397	n:4020000
KS ci ratio: 7.122234e-02	ci left: 7.261624e-04	ci right 7.800335e-04	k: 3026	n:4020000
SLC15A3   4020000 perm   8165 sec   (492 perm/sec)   p_kst 7.527363e-04   p_cons 6.626791e-02   p_joint 3.308458e-04

Joint ci ratio: 1.073090e-01	ci left: 3.132516e-04	ci right 3.490112e-04	k: 1333	n:4030000
Cons ci ratio: 7.330001e-03	ci left: 6.602185e-02	ci right 6.650781e-02	k: 267046	n:4030000
KS ci ratio: 7.116361e-02	ci left: 7.255791e-04	ci right 7.793608e-04	k: 3031	n:4030000
SLC15A3   4030000 perm   8203 sec   (491 perm/sec)   p_kst 7.521092e-04   p_cons 6.626452e-02   p_joint 3.307692e-04

Joint ci ratio: 1.072287e-01	ci left: 3.129580e-04	ci right 3.486557e-04	k: 1335	n:4040000
Cons ci ratio: 7.320904e-03	ci left: 6.602248e-02	ci right 6.650784e-02	k: 267710	n:4040000
KS ci ratio: 7.104653e-02	ci left: 7.262144e-04	ci right 7.799509e-04	k: 3041	n:4040000
SLC15A3   4040000 perm   8242 sec   (490 perm/sec)   p_kst 7.527228e-04   p_cons 6.626485e-02   p_joint 3.304455e-04

Joint ci ratio: 1.071485e-01	ci left: 3.126658e-04	ci right 3.483018e-04	k: 1337	n:4050000
Cons ci ratio: 7.311709e-03	ci left: 6.602533e-02	ci right 6.651010e-02	k: 268383	n:4050000
KS ci ratio: 7.095328e-02	ci left: 7.263615e-04	ci right 7.800355e-04	k: 3049	n:4050000
SLC15A3   4050000 perm   8280 sec   (489 perm/sec)   p_kst 7.528395e-04   p_cons 6.626741e-02   p_joint 3.301235e-04

Joint ci ratio: 1.071486e-01	ci left: 3.118957e-04	ci right 3.474440e-04	k: 1337	n:4060000
Cons ci ratio: 7.303029e-03	ci left: 6.602006e-02	ci right 6.650421e-02	k: 269023	n:4060000
KS ci ratio: 7.089522e-02	ci left: 7.257821e-04	ci right 7.793676e-04	k: 3054	n:4060000
SLC15A3   4060000 perm   8318 sec   (488 perm/sec)   p_kst 7.522167e-04   p_cons 6.626182e-02   p_joint 3.293103e-04

Joint ci ratio: 1.069888e-01	ci left: 3.120859e-04	ci right 3.475994e-04	k: 1341	n:4070000
Cons ci ratio: 7.293727e-03	ci left: 6.602584e-02	ci right 6.650942e-02	k: 269708	n:4070000
KS ci ratio: 7.081414e-02	ci left: 7.256883e-04	ci right 7.792030e-04	k: 3061	n:4070000
SLC15A3   4070000 perm   8357 sec   (487 perm/sec)   p_kst 7.520885e-04   p_cons 6.626732e-02   p_joint 3.294840e-04

Joint ci ratio: 1.069091e-01	ci left: 3.117980e-04	ci right 3.472508e-04	k: 1343	n:4080000
Cons ci ratio: 7.285356e-03	ci left: 6.601643e-02	ci right 6.649938e-02	k: 270331	n:4080000
KS ci ratio: 7.072181e-02	ci left: 7.258357e-04	ci right 7.792887e-04	k: 3069	n:4080000
SLC15A3   4080000 perm   8395 sec   (486 perm/sec)   p_kst 7.522059e-04   p_cons 6.625760e-02   p_joint 3.291667e-04

Joint ci ratio: 1.069092e-01	ci left: 3.110357e-04	ci right 3.464017e-04	k: 1343	n:4090000
Cons ci ratio: 7.276481e-03	ci left: 6.601610e-02	ci right 6.649845e-02	k: 270991	n:4090000
KS ci ratio: 7.065282e-02	ci left: 7.255021e-04	ci right 7.788763e-04	k: 3075	n:4090000
SLC15A3   4090000 perm   8434 sec   (485 perm/sec)   p_kst 7.518337e-04   p_cons 6.625697e-02   p_joint 3.283619e-04

Joint ci ratio: 1.068297e-01	ci left: 3.107518e-04	ci right 3.460577e-04	k: 1345	n:4100000
Cons ci ratio: 7.267754e-03	ci left: 6.601382e-02	ci right 6.649558e-02	k: 271643	n:4100000
KS ci ratio: 7.058402e-02	ci left: 7.251702e-04	ci right 7.784658e-04	k: 3081	n:4100000
SLC15A3   4100000 perm   8473 sec   (484 perm/sec)   p_kst 7.514634e-04   p_cons 6.625439e-02   p_joint 3.280488e-04

Joint ci ratio: 1.067109e-01	ci left: 3.107062e-04	ci right 3.459651e-04	k: 1348	n:4110000
Cons ci ratio: 7.258115e-03	ci left: 6.602758e-02	ci right 6.650880e-02	k: 272361	n:4110000
KS ci ratio: 7.053829e-02	ci left: 7.243618e-04	ci right 7.775621e-04	k: 3085	n:4110000
SLC15A3   4110000 perm   8513 sec   (483 perm/sec)   p_kst 7.506083e-04   p_cons 6.626788e-02   p_joint 3.279805e-04

Joint ci ratio: 1.065530e-01	ci left: 3.108970e-04	ci right 3.461222e-04	k: 1352	n:4120000
Cons ci ratio: 7.248956e-03	ci left: 6.603377e-02	ci right 6.651442e-02	k: 273048	n:4120000
KS ci ratio: 7.041288e-02	ci left: 7.252265e-04	ci right 7.783918e-04	k: 3096	n:4120000
SLC15A3   4120000 perm   8552 sec   (482 perm/sec)   p_kst 7.514563e-04   p_cons 6.627379e-02   p_joint 3.281553e-04

Joint ci ratio: 1.063567e-01	ci left: 3.113227e-04	ci right 3.465270e-04	k: 1357	n:4130000
Cons ci ratio: 7.239887e-03	ci left: 6.603895e-02	ci right 6.651904e-02	k: 273731	n:4130000
KS ci ratio: 7.032211e-02	ci left: 7.253735e-04	ci right 7.784782e-04	k: 3104	n:4130000
SLC15A3   4130000 perm   8592 sec   (481 perm/sec)   p_kst 7.515738e-04   p_cons 6.627869e-02   p_joint 3.285714e-04

Joint ci ratio: 1.062394e-01	ci left: 3.112760e-04	ci right 3.464338e-04	k: 1360	n:4140000
Cons ci ratio: 7.231135e-03	ci left: 6.603930e-02	ci right 6.651880e-02	k: 274394	n:4140000
KS ci ratio: 7.020912e-02	ci left: 7.259944e-04	ci right 7.790557e-04	k: 3114	n:4140000
SLC15A3   4140000 perm   8631 sec   (480 perm/sec)   p_kst 7.521739e-04   p_cons 6.627874e-02   p_joint 3.285024e-04

Joint ci ratio: 1.062004e-01	ci left: 3.107605e-04	ci right 3.458464e-04	k: 1361	n:4150000
Cons ci ratio: 7.223118e-03	ci left: 6.602761e-02	ci right 6.650649e-02	k: 275007	n:4150000
KS ci ratio: 7.011914e-02	ci left: 7.261389e-04	ci right 7.791400e-04	k: 3122	n:4150000
SLC15A3   4150000 perm   8670 sec   (479 perm/sec)   p_kst 7.522892e-04   p_cons 6.626675e-02   p_joint 3.279518e-04

Joint ci ratio: 1.060448e-01	ci left: 3.109495e-04	ci right 3.460021e-04	k: 1365	n:4160000
Cons ci ratio: 7.215155e-03	ci left: 6.601549e-02	ci right 6.649376e-02	k: 275618	n:4160000
KS ci ratio: 7.007430e-02	ci left: 7.253381e-04	ci right 7.782454e-04	k: 3126	n:4160000
SLC15A3   4160000 perm   8709 sec   (478 perm/sec)   p_kst 7.514423e-04   p_cons 6.625433e-02   p_joint 3.281250e-04

Joint ci ratio: 1.059285e-01	ci left: 3.109042e-04	ci right 3.459108e-04	k: 1368	n:4170000
Cons ci ratio: 7.206227e-03	ci left: 6.602044e-02	ci right 6.649815e-02	k: 276300	n:4170000
KS ci ratio: 6.999601e-02	ci left: 7.252479e-04	ci right 7.780872e-04	k: 3133	n:4170000
SLC15A3   4170000 perm   8748 sec   (477 perm/sec)   p_kst 7.513189e-04   p_cons 6.625899e-02   p_joint 3.280576e-04

Joint ci ratio: 1.058513e-01	ci left: 3.106262e-04	ci right 3.455745e-04	k: 1370	n:4180000
Cons ci ratio: 7.197360e-03	ci left: 6.602488e-02	ci right 6.650203e-02	k: 276980	n:4180000
KS ci ratio: 6.992911e-02	ci left: 7.249232e-04	ci right 7.776863e-04	k: 3139	n:4180000
SLC15A3   4180000 perm   8787 sec   (476 perm/sec)   p_kst 7.509569e-04   p_cons 6.626316e-02   p_joint 3.277512e-04

Joint ci ratio: 1.056972e-01	ci left: 3.108143e-04	ci right 3.457296e-04	k: 1374	n:4190000
Cons ci ratio: 7.188914e-03	ci left: 6.602263e-02	ci right 6.649921e-02	k: 277632	n:4190000
KS ci ratio: 6.980692e-02	ci left: 7.257725e-04	ci right 7.785013e-04	k: 3150	n:4190000
SLC15A3   4190000 perm   8826 sec   (475 perm/sec)   p_kst 7.517900e-04   p_cons 6.626062e-02   p_joint 3.279236e-04

Joint ci ratio: 1.056972e-01	ci left: 3.100742e-04	ci right 3.449064e-04	k: 1374	n:4200000
Cons ci ratio: 7.180967e-03	ci left: 6.601231e-02	ci right 6.648828e-02	k: 278250	n:4200000
KS ci ratio: 6.972951e-02	ci left: 7.256820e-04	ci right 7.783435e-04	k: 3157	n:4200000
SLC15A3   4200000 perm   8867 sec   (474 perm/sec)   p_kst 7.516667e-04   p_cons 6.625000e-02   p_joint 3.271429e-04

Joint ci ratio: 1.056973e-01	ci left: 3.093377e-04	ci right 3.440872e-04	k: 1374	n:4210000
Cons ci ratio: 7.172275e-03	ci left: 6.601532e-02	ci right 6.649074e-02	k: 278924	n:4210000
KS ci ratio: 6.967440e-02	ci left: 7.251253e-04	ci right 7.777031e-04	k: 3162	n:4210000
SLC15A3   4210000 perm   8907 sec   (473 perm/sec)   p_kst 7.510689e-04   p_cons 6.625273e-02   p_joint 3.263658e-04

Joint ci ratio: 1.056973e-01	ci left: 3.086047e-04	ci right 3.432718e-04	k: 1374	n:4220000
Cons ci ratio: 7.163258e-03	ci left: 6.602447e-02	ci right 6.649935e-02	k: 279624	n:4220000
KS ci ratio: 6.956450e-02	ci left: 7.257354e-04	ci right 7.782711e-04	k: 3172	n:4220000
SLC15A3   4220000 perm   8946 sec   (472 perm/sec)   p_kst 7.516588e-04   p_cons 6.626161e-02   p_joint 3.255924e-04

Joint ci ratio: 1.055439e-01	ci left: 3.087957e-04	ci right 3.434309e-04	k: 1378	n:4230000
Cons ci ratio: 7.155300e-03	ci left: 6.601587e-02	ci right 6.649016e-02	k: 280249	n:4230000
KS ci ratio: 6.946604e-02	ci left: 7.261104e-04	ci right 7.785958e-04	k: 3181	n:4230000
SLC15A3   4230000 perm   8987 sec   (471 perm/sec)   p_kst 7.520095e-04   p_cons 6.625272e-02   p_joint 3.257683e-04

Joint ci ratio: 1.054293e-01	ci left: 3.087563e-04	ci right 3.433471e-04	k: 1381	n:4240000
Cons ci ratio: 7.146510e-03	ci left: 6.602215e-02	ci right 6.649590e-02	k: 280937	n:4240000
KS ci ratio: 6.940065e-02	ci left: 7.257884e-04	ci right 7.781992e-04	k: 3187	n:4240000
SLC15A3   4240000 perm   9026 sec   (470 perm/sec)   p_kst 7.516509e-04   p_cons 6.625873e-02   p_joint 3.257075e-04

Joint ci ratio: 1.053150e-01	ci left: 3.087171e-04	ci right 3.432637e-04	k: 1384	n:4250000
Cons ci ratio: 7.138540e-03	ci left: 6.601477e-02	ci right 6.648794e-02	k: 281567	n:4250000
KS ci ratio: 6.932459e-02	ci left: 7.256991e-04	ci right 7.780437e-04	k: 3194	n:4250000
SLC15A3   4250000 perm   9066 sec   (469 perm/sec)   p_kst 7.515294e-04   p_cons 6.625106e-02   p_joint 3.256471e-04

Joint ci ratio: 1.050876e-01	ci left: 3.093638e-04	ci right 3.439034e-04	k: 1390	n:4260000
Cons ci ratio: 7.130366e-03	ci left: 6.601142e-02	ci right 6.648401e-02	k: 282214	n:4260000
KS ci ratio: 6.925960e-02	ci left: 7.253797e-04	ci right 7.776502e-04	k: 3200	n:4260000
SLC15A3   4260000 perm   9105 sec   (468 perm/sec)   p_kst 7.511737e-04   p_cons 6.624742e-02   p_joint 3.262911e-04

Joint ci ratio: 1.048992e-01	ci left: 3.097796e-04	ci right 3.442997e-04	k: 1395	n:4270000
Cons ci ratio: 7.122396e-03	ci left: 6.600503e-02	ci right 6.647705e-02	k: 282848	n:4270000
KS ci ratio: 6.922720e-02	ci left: 7.243713e-04	ci right 7.765438e-04	k: 3203	n:4270000
SLC15A3   4270000 perm   9145 sec   (467 perm/sec)   p_kst 7.501171e-04   p_cons 6.624075e-02   p_joint 3.266979e-04

Joint ci ratio: 1.047119e-01	ci left: 3.101934e-04	ci right 3.446941e-04	k: 1400	n:4280000
Cons ci ratio: 7.114452e-03	ci left: 6.599868e-02	ci right 6.647013e-02	k: 283482	n:4280000
KS ci ratio: 6.910864e-02	ci left: 7.252045e-04	ci right 7.773439e-04	k: 3214	n:4280000
SLC15A3   4280000 perm   9185 sec   (466 perm/sec)   p_kst 7.509346e-04   p_cons 6.623411e-02   p_joint 3.271028e-04

Joint ci ratio: 1.045627e-01	ci left: 3.103783e-04	ci right 3.448474e-04	k: 1404	n:4290000
Cons ci ratio: 7.105906e-03	ci left: 6.600330e-02	ci right 6.647421e-02	k: 284163	n:4290000
KS ci ratio: 6.901210e-02	ci left: 7.255757e-04	ci right 7.776661e-04	k: 3223	n:4290000
SLC15A3   4290000 perm   9225 sec   (465 perm/sec)   p_kst 7.512821e-04   p_cons 6.623846e-02   p_joint 3.272727e-04

Joint ci ratio: 1.043771e-01	ci left: 3.107889e-04	ci right 3.452386e-04	k: 1409	n:4300000
Cons ci ratio: 7.097670e-03	ci left: 6.600302e-02	ci right 6.647338e-02	k: 284823	n:4300000
KS ci ratio: 6.890530e-02	ci left: 7.261738e-04	ci right 7.782232e-04	k: 3233	n:4300000
SLC15A3   4300000 perm   9266 sec   (464 perm/sec)   p_kst 7.518605e-04   p_cons 6.623791e-02   p_joint 3.276744e-04

Joint ci ratio: 1.043401e-01	ci left: 3.102938e-04	ci right 3.446757e-04	k: 1410	n:4310000
Cons ci ratio: 7.089436e-03	ci left: 6.600320e-02	ci right 6.647302e-02	k: 285485	n:4310000
KS ci ratio: 6.884148e-02	ci left: 7.258571e-04	ci right 7.778337e-04	k: 3239	n:4310000
SLC15A3   4310000 perm   9306 sec   (463 perm/sec)   p_kst 7.515081e-04   p_cons 6.623782e-02   p_joint 3.271462e-04

Joint ci ratio: 1.042294e-01	ci left: 3.102518e-04	ci right 3.445904e-04	k: 1413	n:4320000
Cons ci ratio: 7.081019e-03	ci left: 6.600709e-02	ci right 6.647637e-02	k: 286163	n:4320000
KS ci ratio: 6.877784e-02	ci left: 7.255419e-04	ci right 7.774459e-04	k: 3245	n:4320000
SLC15A3   4320000 perm   9346 sec   (462 perm/sec)   p_kst 7.511574e-04   p_cons 6.624144e-02   p_joint 3.270833e-04

Joint ci ratio: 1.041190e-01	ci left: 3.102101e-04	ci right 3.445054e-04	k: 1416	n:4330000
Cons ci ratio: 7.072817e-03	ci left: 6.600772e-02	ci right 6.647646e-02	k: 286827	n:4330000
KS ci ratio: 6.872495e-02	ci left: 7.250011e-04	ci right 7.768250e-04	k: 3250	n:4330000
SLC15A3   4330000 perm   9387 sec   (461 perm/sec)   p_kst 7.505774e-04   p_cons 6.624180e-02   p_joint 3.270208e-04

Joint ci ratio: 1.039724e-01	ci left: 3.103930e-04	ci right 3.446573e-04	k: 1420	n:4340000
Cons ci ratio: 7.064748e-03	ci left: 6.600652e-02	ci right 6.647471e-02	k: 287483	n:4340000
KS ci ratio: 6.866163e-02	ci left: 7.246893e-04	ci right 7.764413e-04	k: 3256	n:4340000
SLC15A3   4340000 perm   9427 sec   (460 perm/sec)   p_kst 7.502304e-04   p_cons 6.624032e-02   p_joint 3.271889e-04

Joint ci ratio: 1.038263e-01	ci left: 3.105751e-04	ci right 3.448084e-04	k: 1424	n:4350000
Cons ci ratio: 7.056681e-03	ci left: 6.600577e-02	ci right 6.647343e-02	k: 288141	n:4350000
KS ci ratio: 6.854595e-02	ci left: 7.255088e-04	ci right 7.772285e-04	k: 3267	n:4350000
SLC15A3   4350000 perm   9469 sec   (459 perm/sec)   p_kst 7.510345e-04   p_cons 6.623931e-02   p_joint 3.273563e-04

Joint ci ratio: 1.037172e-01	ci left: 3.105330e-04	ci right 3.447235e-04	k: 1427	n:4360000
Cons ci ratio: 7.048746e-03	ci left: 6.600320e-02	ci right 6.647031e-02	k: 288791	n:4360000
KS ci ratio: 6.849359e-02	ci left: 7.249719e-04	ci right 7.766123e-04	k: 3272	n:4360000
SLC15A3   4360000 perm   9511 sec   (458 perm/sec)   p_kst 7.504587e-04   p_cons 6.623647e-02   p_joint 3.272936e-04

Joint ci ratio: 1.035722e-01	ci left: 3.107140e-04	ci right 3.448737e-04	k: 1431	n:4370000
Cons ci ratio: 7.040928e-03	ci left: 6.599905e-02	ci right 6.646560e-02	k: 289434	n:4370000
KS ci ratio: 6.838918e-02	ci left: 7.255621e-04	ci right 7.771626e-04	k: 3282	n:4370000
SLC15A3   4370000 perm   9552 sec   (458 perm/sec)   p_kst 7.510297e-04   p_cons 6.623204e-02   p_joint 3.274600e-04

Joint ci ratio: 1.035361e-01	ci left: 3.102270e-04	ci right 3.443205e-04	k: 1432	n:4380000
Cons ci ratio: 7.033280e-03	ci left: 6.599240e-02	ci right 6.645840e-02	k: 290066	n:4380000
KS ci ratio: 6.828524e-02	ci left: 7.261496e-04	ci right 7.777104e-04	k: 3292	n:4380000
SLC15A3   4380000 perm   9593 sec   (457 perm/sec)   p_kst 7.515982e-04   p_cons 6.622511e-02   p_joint 3.269406e-04

Joint ci ratio: 1.034640e-01	ci left: 3.099641e-04	ci right 3.440036e-04	k: 1434	n:4390000
Cons ci ratio: 7.024880e-03	ci left: 6.599943e-02	ci right 6.646492e-02	k: 290758	n:4390000
KS ci ratio: 6.823348e-02	ci left: 7.256151e-04	ci right 7.770972e-04	k: 3297	n:4390000
SLC15A3   4390000 perm   9634 sec   (456 perm/sec)   p_kst 7.510251e-04   p_cons 6.623189e-02   p_joint 3.266515e-04

Joint ci ratio: 1.033200e-01	ci left: 3.101453e-04	ci right 3.441543e-04	k: 1438	n:4400000
Cons ci ratio: 7.017000e-03	ci left: 6.599781e-02	ci right 6.646276e-02	k: 291412	n:4400000
KS ci ratio: 6.815087e-02	ci left: 7.257531e-04	ci right 7.771803e-04	k: 3305	n:4400000
SLC15A3   4400000 perm   9675 sec   (455 perm/sec)   p_kst 7.511364e-04   p_cons 6.623000e-02   p_joint 3.268182e-04

Joint ci ratio: 1.032483e-01	ci left: 3.098838e-04	ci right 3.438392e-04	k: 1440	n:4410000
Cons ci ratio: 7.009043e-03	ci left: 6.599800e-02	ci right 6.646243e-02	k: 292074	n:4410000
KS ci ratio: 6.808912e-02	ci left: 7.254448e-04	ci right 7.768017e-04	k: 3311	n:4410000
SLC15A3   4410000 perm   9716 sec   (454 perm/sec)   p_kst 7.507937e-04   p_cons 6.622993e-02   p_joint 3.265306e-04

Joint ci ratio: 1.030697e-01	ci left: 3.102847e-04	ci right 3.442216e-04	k: 1445	n:4420000
Cons ci ratio: 7.000948e-03	ci left: 6.600113e-02	ci right 6.646505e-02	k: 292749	n:4420000
KS ci ratio: 6.797630e-02	ci left: 7.262499e-04	ci right 7.775752e-04	k: 3322	n:4420000
SLC15A3   4420000 perm   9757 sec   (453 perm/sec)   p_kst 7.515837e-04   p_cons 6.623281e-02   p_joint 3.269231e-04

Joint ci ratio: 1.030341e-01	ci left: 3.098042e-04	ci right 3.436762e-04	k: 1446	n:4430000
Cons ci ratio: 6.992892e-03	ci left: 6.600403e-02	ci right 6.646742e-02	k: 293423	n:4430000
KS ci ratio: 6.790482e-02	ci left: 7.261638e-04	ci right 7.774270e-04	k: 3329	n:4430000
SLC15A3   4430000 perm   9798 sec   (452 perm/sec)   p_kst 7.514673e-04   p_cons 6.623544e-02   p_joint 3.264108e-04

Joint ci ratio: 1.029274e-01	ci left: 3.097647e-04	ci right 3.435952e-04	k: 1449	n:4440000
Cons ci ratio: 6.985043e-03	ci left: 6.600376e-02	ci right 6.646663e-02	k: 294083	n:4440000
KS ci ratio: 6.780307e-02	ci left: 7.267423e-04	ci right 7.779664e-04	k: 3339	n:4440000
SLC15A3   4440000 perm   9840 sec   (451 perm/sec)   p_kst 7.520270e-04   p_cons 6.623491e-02   p_joint 3.263514e-04

Joint ci ratio: 1.027857e-01	ci left: 3.099444e-04	ci right 3.437451e-04	k: 1453	n:4450000
Cons ci ratio: 6.977385e-03	ci left: 6.600057e-02	ci right 6.646291e-02	k: 294730	n:4450000
KS ci ratio: 6.776254e-02	ci left: 7.259928e-04	ci right 7.771323e-04	k: 3343	n:4450000
SLC15A3   4450000 perm   9882 sec   (450 perm/sec)   p_kst 7.512360e-04   p_cons 6.623146e-02   p_joint 3.265169e-04

Joint ci ratio: 1.026446e-01	ci left: 3.101233e-04	ci right 3.438942e-04	k: 1457	n:4460000
Cons ci ratio: 6.969802e-03	ci left: 6.599651e-02	ci right 6.645832e-02	k: 295373	n:4460000
KS ci ratio: 6.769173e-02	ci left: 7.259080e-04	ci right 7.769860e-04	k: 3350	n:4460000
SLC15A3   4460000 perm   9924 sec   (449 perm/sec)   p_kst 7.511211e-04   p_cons 6.622713e-02   p_joint 3.266816e-04

Joint ci ratio: 1.025041e-01	ci left: 3.103014e-04	ci right 3.440427e-04	k: 1461	n:4470000
Cons ci ratio: 6.961867e-03	ci left: 6.599916e-02	ci right 6.646046e-02	k: 296046	n:4470000
KS ci ratio: 6.765139e-02	ci left: 7.251637e-04	ci right 7.761577e-04	k: 3354	n:4470000
SLC15A3   4470000 perm   9966 sec   (449 perm/sec)   p_kst 7.503356e-04   p_cons 6.622953e-02   p_joint 3.268456e-04

Joint ci ratio: 1.023991e-01	ci left: 3.102612e-04	ci right 3.439615e-04	k: 1464	n:4480000
Cons ci ratio: 6.954736e-03	ci left: 6.598799e-02	ci right 6.644873e-02	k: 296657	n:4480000
KS ci ratio: 6.760105e-02	ci left: 7.246422e-04	ci right 7.755602e-04	k: 3359	n:4480000
SLC15A3   4480000 perm   10008 sec   (448 perm/sec)   p_kst 7.497768e-04   p_cons 6.621808e-02   p_joint 3.267857e-04

Joint ci ratio: 1.022944e-01	ci left: 3.102213e-04	ci right 3.438807e-04	k: 1467	n:4490000
Cons ci ratio: 6.947352e-03	ci left: 6.598176e-02	ci right 6.644197e-02	k: 297290	n:4490000
KS ci ratio: 6.752071e-02	ci left: 7.247800e-04	ci right 7.756447e-04	k: 3367	n:4490000
SLC15A3   4490000 perm   10051 sec   (447 perm/sec)   p_kst 7.498886e-04   p_cons 6.621158e-02   p_joint 3.267261e-04

Joint ci ratio: 1.021206e-01	ci left: 3.106146e-04	ci right 3.442560e-04	k: 1472	n:4500000
Cons ci ratio: 6.939605e-03	ci left: 6.598243e-02	ci right 6.644213e-02	k: 297954	n:4500000
KS ci ratio: 6.745066e-02	ci left: 7.246986e-04	ci right 7.755029e-04	k: 3374	n:4500000
SLC15A3   4500000 perm   10094 sec   (446 perm/sec)   p_kst 7.497778e-04   p_cons 6.621200e-02   p_joint 3.271111e-04

Joint ci ratio: 1.019823e-01	ci left: 3.107902e-04	ci right 3.444023e-04	k: 1476	n:4510000
Cons ci ratio: 6.932394e-03	ci left: 6.597402e-02	ci right 6.643319e-02	k: 298577	n:4510000
KS ci ratio: 6.735094e-02	ci left: 7.252717e-04	ci right 7.760380e-04	k: 3384	n:4510000
SLC15A3   4510000 perm   10136 sec   (445 perm/sec)   p_kst 7.503326e-04   p_cons 6.620333e-02   p_joint 3.272727e-04

Joint ci ratio: 1.017757e-01	ci left: 3.113962e-04	ci right 3.450015e-04	k: 1482	n:4520000
Cons ci ratio: 6.924585e-03	ci left: 6.597670e-02	ci right 6.643536e-02	k: 299250	n:4520000
KS ci ratio: 6.727149e-02	ci left: 7.254072e-04	ci right 7.761208e-04	k: 3392	n:4520000
SLC15A3   4520000 perm   10178 sec   (444 perm/sec)   p_kst 7.504425e-04   p_cons 6.620575e-02   p_joint 3.278761e-04

Joint ci ratio: 1.016387e-01	ci left: 3.115693e-04	ci right 3.451454e-04	k: 1486	n:4530000
Cons ci ratio: 6.916791e-03	ci left: 6.597958e-02	ci right 6.643775e-02	k: 299924	n:4530000
KS ci ratio: 6.721210e-02	ci left: 7.251081e-04	ci right 7.757543e-04	k: 3398	n:4530000
SLC15A3   4530000 perm   10221 sec   (443 perm/sec)   p_kst 7.501104e-04   p_cons 6.620839e-02   p_joint 3.280353e-04

Joint ci ratio: 1.015023e-01	ci left: 3.117417e-04	ci right 3.452886e-04	k: 1490	n:4540000
Cons ci ratio: 6.908887e-03	ci left: 6.598488e-02	ci right 6.644255e-02	k: 300609	n:4540000
KS ci ratio: 6.715286e-02	ci left: 7.248104e-04	ci right 7.753893e-04	k: 3404	n:4540000
SLC15A3   4540000 perm   10263 sec   (442 perm/sec)   p_kst 7.497797e-04   p_cons 6.621344e-02   p_joint 3.281938e-04

Joint ci ratio: 1.014003e-01	ci left: 3.116992e-04	ci right 3.452058e-04	k: 1493	n:4550000
Cons ci ratio: 6.901709e-03	ci left: 6.597764e-02	ci right 6.643478e-02	k: 301237	n:4550000
KS ci ratio: 6.705445e-02	ci left: 7.253783e-04	ci right 7.759199e-04	k: 3414	n:4550000
SLC15A3   4550000 perm   10306 sec   (442 perm/sec)   p_kst 7.503297e-04   p_cons 6.620593e-02   p_joint 3.281319e-04

Joint ci ratio: 1.013325e-01	ci left: 3.114431e-04	ci right 3.448985e-04	k: 1495	n:4560000
Cons ci ratio: 6.894040e-03	ci left: 6.597963e-02	ci right 6.643628e-02	k: 301907	n:4560000
KS ci ratio: 6.696626e-02	ci left: 7.257282e-04	ci right 7.762250e-04	k: 3423	n:4560000
SLC15A3   4560000 perm   10348 sec   (441 perm/sec)   p_kst 7.506579e-04   p_cons 6.620768e-02   p_joint 3.278509e-04

Joint ci ratio: 1.012311e-01	ci left: 3.114014e-04	ci right 3.448169e-04	k: 1498	n:4570000
Cons ci ratio: 6.886604e-03	ci left: 6.597789e-02	ci right 6.643404e-02	k: 302560	n:4570000
KS ci ratio: 6.688816e-02	ci left: 7.258614e-04	ci right 7.763063e-04	k: 3431	n:4570000
SLC15A3   4570000 perm   10391 sec   (440 perm/sec)   p_kst 7.507659e-04   p_cons 6.620569e-02   p_joint 3.277899e-04

Joint ci ratio: 1.011637e-01	ci left: 3.111472e-04	ci right 3.445117e-04	k: 1500	n:4580000
Cons ci ratio: 6.879022e-03	ci left: 6.597922e-02	ci right 6.643487e-02	k: 303227	n:4580000
KS ci ratio: 6.677149e-02	ci left: 7.268529e-04	ci right 7.772752e-04	k: 3443	n:4580000
SLC15A3   4580000 perm   10434 sec   (439 perm/sec)   p_kst 7.517467e-04   p_cons 6.620677e-02   p_joint 3.275109e-04

Joint ci ratio: 1.010963e-01	ci left: 3.108940e-04	ci right 3.442079e-04	k: 1502	n:4590000
Cons ci ratio: 6.871380e-03	ci left: 6.598206e-02	ci right 6.643722e-02	k: 303901	n:4590000
KS ci ratio: 6.673278e-02	ci left: 7.261262e-04	ci right 7.764678e-04	k: 3447	n:4590000
SLC15A3   4590000 perm   10477 sec   (438 perm/sec)   p_kst 7.509804e-04   p_cons 6.620937e-02   p_joint 3.272331e-04

Joint ci ratio: 1.009956e-01	ci left: 3.108538e-04	ci right 3.441283e-04	k: 1505	n:4600000
Cons ci ratio: 6.863787e-03	ci left: 6.598446e-02	ci right 6.643913e-02	k: 304573	n:4600000
KS ci ratio: 6.666515e-02	ci left: 7.260441e-04	ci right 7.763269e-04	k: 3454	n:4600000
SLC15A3   4600000 perm   10520 sec   (437 perm/sec)   p_kst 7.508696e-04   p_cons 6.621152e-02   p_joint 3.271739e-04

Joint ci ratio: 1.009956e-01	ci left: 3.101795e-04	ci right 3.433818e-04	k: 1505	n:4610000
Cons ci ratio: 6.856316e-03	ci left: 6.598511e-02	ci right 6.643929e-02	k: 305237	n:4610000
KS ci ratio: 6.662661e-02	ci left: 7.253223e-04	ci right 7.755251e-04	k: 3458	n:4610000
SLC15A3   4610000 perm   10566 sec   (436 perm/sec)   p_kst 7.501085e-04   p_cons 6.621193e-02   p_joint 3.264642e-04

Joint ci ratio: 1.008618e-01	ci left: 3.103521e-04	ci right 3.435262e-04	k: 1509	n:4620000
Cons ci ratio: 6.848714e-03	ci left: 6.598857e-02	ci right 6.644227e-02	k: 305914	n:4620000
KS ci ratio: 6.654009e-02	ci left: 7.256680e-04	ci right 7.758269e-04	k: 3467	n:4620000
SLC15A3   4620000 perm   10610 sec   (435 perm/sec)   p_kst 7.504329e-04   p_cons 6.621515e-02   p_joint 3.266234e-04

Joint ci ratio: 1.007617e-01	ci left: 3.103134e-04	ci right 3.434485e-04	k: 1512	n:4630000
Cons ci ratio: 6.841686e-03	ci left: 6.598210e-02	ci right 6.643529e-02	k: 306545	n:4630000
KS ci ratio: 6.646348e-02	ci left: 7.257998e-04	ci right 7.759079e-04	k: 3475	n:4630000
SLC15A3   4630000 perm   10654 sec   (435 perm/sec)   p_kst 7.505400e-04   p_cons 6.620842e-02   p_joint 3.265659e-04

Joint ci ratio: 1.006288e-01	ci left: 3.104850e-04	ci right 3.435921e-04	k: 1516	n:4640000
Cons ci ratio: 6.834501e-03	ci left: 6.597888e-02	ci right 6.643157e-02	k: 307191	n:4640000
KS ci ratio: 6.637759e-02	ci left: 7.261430e-04	ci right 7.762075e-04	k: 3484	n:4640000
SLC15A3   4640000 perm   10696 sec   (434 perm/sec)   p_kst 7.508621e-04   p_cons 6.620496e-02   p_joint 3.267241e-04

Joint ci ratio: 1.004964e-01	ci left: 3.106558e-04	ci right 3.437350e-04	k: 1520	n:4650000
Cons ci ratio: 6.827042e-03	ci left: 6.598105e-02	ci right 6.643325e-02	k: 307862	n:4650000
KS ci ratio: 6.631103e-02	ci left: 7.260618e-04	ci right 7.760686e-04	k: 3491	n:4650000
SLC15A3   4650000 perm   10740 sec   (433 perm/sec)   p_kst 7.507527e-04   p_cons 6.620688e-02   p_joint 3.268817e-04

Joint ci ratio: 1.002659e-01	ci left: 3.114536e-04	ci right 3.445372e-04	k: 1527	n:4660000
Cons ci ratio: 6.819832e-03	ci left: 6.597913e-02	ci right 6.643085e-02	k: 308514	n:4660000
KS ci ratio: 6.620681e-02	ci left: 7.268252e-04	ci right 7.768028e-04	k: 3502	n:4660000
SLC15A3   4660000 perm   10784 sec   (432 perm/sec)   p_kst 7.515021e-04   p_cons 6.620472e-02   p_joint 3.276824e-04

Joint ci ratio: 1.001349e-01	ci left: 3.116218e-04	ci right 3.446774e-04	k: 1531	n:4670000
Cons ci ratio: 6.812527e-03	ci left: 6.597937e-02	ci right 6.643059e-02	k: 309176	n:4670000
KS ci ratio: 6.614076e-02	ci left: 7.267429e-04	ci right 7.766632e-04	k: 3509	n:4670000
SLC15A3   4670000 perm   10827 sec   (431 perm/sec)   p_kst 7.513919e-04   p_cons 6.620471e-02   p_joint 3.278373e-04

Joint ci ratio: 1.000370e-01	ci left: 3.115809e-04	ci right 3.445980e-04	k: 1534	n:4680000
Cons ci ratio: 6.805375e-03	ci left: 6.597725e-02	ci right 6.642799e-02	k: 309827	n:4680000
KS ci ratio: 6.600920e-02	ci left: 7.281321e-04	ci right 7.780445e-04	k: 3523	n:4680000
SLC15A3   4680000 perm   10871 sec   (431 perm/sec)   p_kst 7.527778e-04   p_cons 6.620235e-02   p_joint 3.277778e-04

Joint ci ratio: 9.984202e-02	ci left: 3.121639e-04	ci right 3.451745e-04	k: 1540	n:4690000
Cons ci ratio: 6.797963e-03	ci left: 6.598025e-02	ci right 6.643052e-02	k: 310502	n:4690000
KS ci ratio: 6.595309e-02	ci left: 7.278378e-04	ci right 7.776860e-04	k: 3529	n:4690000
SLC15A3   4690000 perm   10915 sec   (430 perm/sec)   p_kst 7.524520e-04   p_cons 6.620512e-02   p_joint 3.283582e-04

Outputting figure to mutsig2_images.part000000000158/SLC15A3.2_1778_4690000_0.00075245_0.066205_0.00032836.png
                gene_name: SLC15A3
               theta_stop: 0.100 
                    nperm: 4690000 
                     p_ks: 0.00075 
        ci_ks_bounds_left: 0.00073 
       ci_ks_bounds_right: 0.00078 
                   p_cons: 0.066 
      ci_cons_bounds_left: 0.066 
     ci_cons_bounds_right: 0.066 
                  p_joint: 0.00033 
     ci_joint_bounds_left: 0.00031 
    ci_joint_bounds_right: 0.00035 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000158
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 158 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1730>
Subject: Job 9878169: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1730>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000159> was used as the working directory.
Started at Fri Oct  5 22:56:41 2012
Results reported at Fri Oct  5 22:57:29 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000159.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000159.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 159  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000159.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     46.69 sec.
    Max Memory :       878 MB
    Max Swap   :      3674 MB

    Max Processes  :         7
    Max Threads    :        67

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
159
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 159
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 159: processing genes 14327 - 14417
Calculating significance of each gene.
Using projection method.
14327	SLC1A1	1
14328	SLC1A2	1
14329	SLC1A3	1
14330	SLC1A4	1
14331	SLC1A5	1
14332	SLC1A6	1.266997e-01
14333	SLC1A7	1
14334	SLC20A1	1.300609e-01
14335	SLC20A2	1
14336	SLC22A1	1
14337	SLC22A10	1.128027e-01
14338	SLC22A11	1
14339	SLC22A12	1
14340	SLC22A13	1
14341	SLC22A14	1
14342	SLC22A15	1.807765e-01
14343	SLC22A16	1
14344	SLC22A17	1
14345	SLC22A18	1
14346	SLC22A2	1
14347	SLC22A20	1
14348	SLC22A23	1
14349	SLC22A25	1
14350	SLC22A3	1
In gene SLC22A4 the following bins exceed PROBCAP:
    PRAD-EJ-5517	categ 6	N = 1680    n = 1	mu =   1.98e-07
14351	SLC22A4	4.019126e-02
14352	SLC22A5	1
14353	SLC22A6	1
14354	SLC22A7	7.275655e-02
14355	SLC22A8	1
14356	SLC22A9	1
14357	SLC23A1	1
14358	SLC23A2	1
14359	SLC23A3	1
14360	SLC24A1	1
14361	SLC24A2	1
14362	SLC24A3	1
14363	SLC24A4	1
14364	SLC24A5	1
14365	SLC24A6	1.781539e-01
14366	SLC25A1	1
14367	SLC25A10	1
14368	SLC25A11	1
14369	SLC25A12	1
14370	SLC25A13	1
14371	SLC25A14	1
14372	SLC25A15	1
14373	SLC25A16	1
14374	SLC25A17	1
14375	SLC25A18	1
14376	SLC25A19	1
14377	SLC25A2	6.165559e-02
14378	SLC25A20	7.480015e-02
14379	SLC25A21	1
14380	SLC25A22	1
14381	SLC25A23	1
14382	SLC25A24	1
In gene SLC25A25 the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 1747    n = 1	mu =   9.08e-07
14383	SLC25A25	2.055018e-01
14384	SLC25A26	1
14385	SLC25A27	1
14386	SLC25A28	1
14387	SLC25A29	1
14388	SLC25A3	1.040735e-01
14389	SLC25A30	1
14390	SLC25A31	1
14391	SLC25A32	1
14392	SLC25A33	1
14393	SLC25A34	1
14394	SLC25A35	1
14395	SLC25A36	1
14396	SLC25A37	1
14397	SLC25A38	1
14398	SLC25A39	1
14399	SLC25A4	1
14400	SLC25A40	1
14401	SLC25A41	1
14402	SLC25A42	1
14403	SLC25A43	1
14404	SLC25A44	1
14405	SLC25A45	1
14406	SLC25A46	1
14407	SLC25A5	1
14408	SLC25A6	1
14409	SLC26A1	1
14410	SLC26A10	1
14411	SLC26A11	1
14412	SLC26A2	1
14413	SLC26A3	1
14414	SLC26A4	1
14415	SLC26A5	1
14416	SLC26A6	1
14417	SLC26A7	1
Done

Running MutSig 2:
Scatter job 159: processing genes 14327 - 14417
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000159
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 159 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 9878176: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000160> was used as the working directory.
Started at Fri Oct  5 22:56:41 2012
Results reported at Sat Oct  6 01:40:41 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000160.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000160.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 160  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000160.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   9828.69 sec.
    Max Memory :      2087 MB
    Max Swap   :      4782 MB

    Max Processes  :         7
    Max Threads    :        71

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
160
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 160
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 160: processing genes 14418 - 14507
Calculating significance of each gene.
Using projection method.
14418	SLC26A8	1
14419	SLC26A9	1
14420	SLC27A1	1
14421	SLC27A2	1
14422	SLC27A3	1
14423	SLC27A4	1
14424	SLC27A5	1
14425	SLC27A6	1.692716e-01
14426	SLC28A1	1.840374e-02
14427	SLC28A2	1
14428	SLC28A3	1
14429	SLC29A1	1
14430	SLC29A2	1
14431	SLC29A3	1
14432	SLC29A4	1
14433	SLC2A1	1
14434	SLC2A10	1
14435	SLC2A11	1
14436	SLC2A12	1
14437	SLC2A13	1
14438	SLC2A14	7.391913e-02
14439	SLC2A2	1
14440	SLC2A3	1
14441	SLC2A4	1
14442	SLC2A4RG	1
14443	SLC2A5	1
14444	SLC2A6	2.567100e-03
14445	SLC2A7	3.465475e-02
14446	SLC2A8	1
14447	SLC2A9	1
14448	SLC30A1	1
14449	SLC30A10	1
14450	SLC30A2	1
14451	SLC30A3	1
In gene SLC30A4 the following bins exceed PROBCAP:
    PRAD-G9-6371	categ 6	N = 1318    n = 1	mu =   1.34e-07
14452	SLC30A4	1.951063e-02
14453	SLC30A5	1
14454	SLC30A6	1
14455	SLC30A7	1
14456	SLC30A8	1
14457	SLC30A9	1
14458	SLC31A1	1
14459	SLC31A2	1
14460	SLC32A1	1
14461	SLC33A1	1.336874e-01
14462	SLC34A1	1
14463	SLC34A2	1
14464	SLC34A3	1
14465	SLC35A1	1
14466	SLC35A2	1
14467	SLC35A3	1
14468	SLC35A4	1
14469	SLC35A5	1
14470	SLC35B1	1
14471	SLC35B2	1
14472	SLC35B3	1
14473	SLC35B4	1
14474	SLC35C1	1
14475	SLC35C2	1.402756e-01
14476	SLC35D1	1
14477	SLC35D2	1
14478	SLC35D3	1
14479	SLC35E1	1
14480	SLC35E2	1
14481	SLC35E3	1
14482	SLC35E4	1
14483	SLC35F1	1
14484	SLC35F2	1
14485	SLC35F3	1
14486	SLC35F4	1
14487	SLC35F5	1.262493e-01
14488	SLC36A1	1
14489	SLC36A2	5.326485e-02
14490	SLC36A3	1
14491	SLC36A4	1
14492	SLC37A1	1
14493	SLC37A2	1
14494	SLC37A3	1
14495	SLC37A4	8.072235e-02
14496	SLC38A1	5.721816e-02
14497	SLC38A10	1
14498	SLC38A11	1
14499	SLC38A2	1
14500	SLC38A3	1
14501	SLC38A4	1
14502	SLC38A5	1
14503	SLC38A6	1
14504	SLC38A7	1
14505	SLC38A8	1
14506	SLC38A9	1
14507	SLC39A1	1
Done

Running MutSig 2:
Scatter job 160: processing genes 14418 - 14507
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SLC28A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.843345e-02	ci left: 4.999504e-01	ci right 5.196439e-01	k: 5098	n:10000
Cons ci ratio: 4.668649e-02	ci left: 4.037247e-01	ci right 4.231258e-01	k: 4134	n:10000
KS ci ratio: 5.090022e-02	ci left: 3.627141e-01	ci right 3.817604e-01	k: 3722	n:10000
SLC28A1   10000 perm   2 sec   (6512 perm/sec)   p_kst 3.722000e-01   p_cons 4.134000e-01   p_joint 5.098000e-01

Outputting figure to mutsig2_images.part000000000160/SLC28A1.2_2089_10000_0.3722_0.4134_0.5098.png
                gene_name: SLC28A1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 50 percent done.
SLC2A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 1.752551e+00	ci left: 1.089969e-04	ci right 1.023839e-03	k: 4	n:10000
KS ci ratio: 1.752551e+00	ci left: 1.089969e-04	ci right 1.023839e-03	k: 4	n:10000
SLC2A6   10000 perm   1 sec   (7369 perm/sec)   p_kst 4.000000e-04   p_cons 4.000000e-04   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 1.481324e+00	ci left: 1.101024e-04	ci right 6.528585e-04	k: 6	n:20000
KS ci ratio: 1.131239e+00	ci left: 2.745890e-04	ci right 9.838883e-04	k: 11	n:20000
SLC2A6   20000 perm   3 sec   (6401 perm/sec)   p_kst 5.500000e-04   p_cons 3.000000e-04   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 1.181688e+00	ci left: 1.598575e-04	ci right 6.129261e-04	k: 10	n:30000
KS ci ratio: 9.236603e-01	ci left: 3.301378e-04	ci right 9.071337e-04	k: 17	n:30000
SLC2A6   30000 perm   5 sec   (6097 perm/sec)   p_kst 5.666667e-04   p_cons 3.333333e-04   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 1.131423e+00	ci left: 1.372867e-04	ci right 4.919976e-04	k: 11	n:40000
KS ci ratio: 7.999166e-01	ci left: 3.645345e-04	ci right 8.626582e-04	k: 23	n:40000
SLC2A6   40000 perm   7 sec   (5909 perm/sec)   p_kst 5.750000e-04   p_cons 2.750000e-04   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 1.087060e+00	ci left: 1.240175e-04	ci right 4.191941e-04	k: 12	n:50000
KS ci ratio: 7.038275e-01	ci left: 4.048529e-04	ci right 8.564274e-04	k: 30	n:50000
SLC2A6   50000 perm   9 sec   (5751 perm/sec)   p_kst 6.000000e-04   p_cons 2.400000e-04   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
KS ci ratio: 6.720784e-01	ci left: 3.786240e-04	ci right 7.723186e-04	k: 33	n:60000
SLC2A6   60000 perm   11 sec   (5619 perm/sec)   p_kst 5.500000e-04   p_cons 1.666667e-05   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
KS ci ratio: 6.275230e-01	ci left: 3.841858e-04	ci right 7.450385e-04	k: 38	n:70000
SLC2A6   70000 perm   13 sec   (5499 perm/sec)   p_kst 5.428571e-04   p_cons 1.428571e-05   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
KS ci ratio: 5.841911e-01	ci left: 3.996584e-04	ci right 7.382798e-04	k: 44	n:80000
SLC2A6   80000 perm   15 sec   (5382 perm/sec)   p_kst 5.500000e-04   p_cons 1.250000e-05   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
KS ci ratio: 5.382919e-01	ci left: 4.315412e-04	ci right 7.576105e-04	k: 52	n:90000
SLC2A6   90000 perm   17 sec   (5269 perm/sec)   p_kst 5.777778e-04   p_cons 1.111111e-05   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
KS ci ratio: 5.059155e-01	ci left: 4.491647e-04	ci right 7.609919e-04	k: 59	n:100000
SLC2A6   100000 perm   19 sec   (5167 perm/sec)   p_kst 5.900000e-04   p_cons 1.000000e-05   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 2.263172e+00	ci left: 2.201910e-06	ci right 6.567742e-05	k: 2	n:110000
KS ci ratio: 4.937299e-01	ci left: 4.321632e-04	ci right 7.224990e-04	k: 62	n:110000
SLC2A6   110000 perm   22 sec   (5072 perm/sec)   p_kst 5.636364e-04   p_cons 1.818182e-05   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 2.263175e+00	ci left: 2.018417e-06	ci right 6.020442e-05	k: 2	n:120000
KS ci ratio: 4.618359e-01	ci left: 4.621246e-04	ci right 7.462493e-04	k: 71	n:120000
SLC2A6   120000 perm   24 sec   (4985 perm/sec)   p_kst 5.916667e-04   p_cons 1.666667e-05   p_joint 0

Joint ci ratio: 3.919970e+00	ci left: 0	ci right 2.837559e-05	k: 0	n:130000
Cons ci ratio: 2.263178e+00	ci left: 1.863154e-06	ci right 5.557340e-05	k: 2	n:130000
KS ci ratio: 4.275672e-01	ci left: 5.085621e-04	ci right 7.914086e-04	k: 83	n:130000
SLC2A6   130000 perm   27 sec   (4902 perm/sec)   p_kst 6.384615e-04   p_cons 1.538462e-05   p_joint 0

Joint ci ratio: 3.919972e+00	ci left: 0	ci right 2.634879e-05	k: 0	n:140000
Cons ci ratio: 2.263181e+00	ci left: 1.730071e-06	ci right 5.160395e-05	k: 2	n:140000
KS ci ratio: 4.153856e-01	ci left: 5.041622e-04	ci right 7.743611e-04	k: 88	n:140000
SLC2A6   140000 perm   29 sec   (4820 perm/sec)   p_kst 6.285714e-04   p_cons 1.428571e-05   p_joint 0

Joint ci ratio: 3.919974e+00	ci left: 0	ci right 2.459223e-05	k: 0	n:150000
Cons ci ratio: 2.263183e+00	ci left: 1.614733e-06	ci right 4.816375e-05	k: 2	n:150000
KS ci ratio: 3.978857e-01	ci left: 5.184319e-04	ci right 7.814942e-04	k: 96	n:150000
SLC2A6   150000 perm   32 sec   (4739 perm/sec)   p_kst 6.400000e-04   p_cons 1.333333e-05   p_joint 0

Joint ci ratio: 3.919976e+00	ci left: 0	ci right 2.305523e-05	k: 0	n:160000
Cons ci ratio: 2.263185e+00	ci left: 1.513812e-06	ci right 4.515356e-05	k: 2	n:160000
KS ci ratio: 3.806167e-01	ci left: 5.367779e-04	ci right 7.943757e-04	k: 105	n:160000
SLC2A6   160000 perm   34 sec   (4664 perm/sec)   p_kst 6.562500e-04   p_cons 1.250000e-05   p_joint 0

Joint ci ratio: 3.919977e+00	ci left: 0	ci right 2.169906e-05	k: 0	n:170000
Cons ci ratio: 2.263186e+00	ci left: 1.424764e-06	ci right 4.249751e-05	k: 2	n:170000
KS ci ratio: 3.562357e-01	ci left: 5.852802e-04	ci right 8.440039e-04	k: 120	n:170000
SLC2A6   170000 perm   37 sec   (4595 perm/sec)   p_kst 7.058824e-04   p_cons 1.176471e-05   p_joint 0

Joint ci ratio: 3.919978e+00	ci left: 0	ci right 2.049356e-05	k: 0	n:180000
Cons ci ratio: 2.263188e+00	ci left: 1.345610e-06	ci right 4.013657e-05	k: 2	n:180000
KS ci ratio: 3.410661e-01	ci left: 6.085281e-04	ci right 8.635522e-04	k: 131	n:180000
SLC2A6   180000 perm   40 sec   (4520 perm/sec)   p_kst 7.277778e-04   p_cons 1.111111e-05   p_joint 0

Joint ci ratio: 3.919979e+00	ci left: 0	ci right 1.941497e-05	k: 0	n:190000
Cons ci ratio: 2.263189e+00	ci left: 1.274788e-06	ci right 3.802415e-05	k: 2	n:190000
KS ci ratio: 3.335705e-01	ci left: 6.054047e-04	ci right 8.523461e-04	k: 137	n:190000
SLC2A6   190000 perm   43 sec   (4448 perm/sec)   p_kst 7.210526e-04   p_cons 1.052632e-05   p_joint 0

Joint ci ratio: 3.919980e+00	ci left: 0	ci right 1.844423e-05	k: 0	n:200000
Cons ci ratio: 2.263190e+00	ci left: 1.211049e-06	ci right 3.612297e-05	k: 2	n:200000
KS ci ratio: 3.210185e-01	ci left: 6.256183e-04	ci right 8.692290e-04	k: 148	n:200000
SLC2A6   200000 perm   46 sec   (4380 perm/sec)   p_kst 7.400000e-04   p_cons 1.000000e-05   p_joint 0

Joint ci ratio: 3.919981e+00	ci left: 0	ci right 1.756594e-05	k: 0	n:210000
Cons ci ratio: 1.959977e+00	ci left: 2.946067e-06	ci right 4.174835e-05	k: 3	n:210000
KS ci ratio: 3.041300e-01	ci left: 6.704367e-04	ci right 9.151111e-04	k: 165	n:210000
SLC2A6   210000 perm   49 sec   (4306 perm/sec)   p_kst 7.857143e-04   p_cons 1.428571e-05   p_joint 0

Joint ci ratio: 3.919982e+00	ci left: 0	ci right 1.676749e-05	k: 0	n:220000
Cons ci ratio: 1.959978e+00	ci left: 2.812155e-06	ci right 3.985072e-05	k: 3	n:220000
KS ci ratio: 2.945260e-01	ci left: 6.862096e-04	ci right 9.272568e-04	k: 176	n:220000
SLC2A6   220000 perm   52 sec   (4226 perm/sec)   p_kst 8.000000e-04   p_cons 1.363636e-05   p_joint 0

Joint ci ratio: 3.919983e+00	ci left: 0	ci right 1.603848e-05	k: 0	n:230000
Cons ci ratio: 1.959979e+00	ci left: 2.689887e-06	ci right 3.811810e-05	k: 3	n:230000
KS ci ratio: 2.880876e-01	ci left: 6.886160e-04	ci right 9.242580e-04	k: 184	n:230000
SLC2A6   230000 perm   55 sec   (4162 perm/sec)   p_kst 8.000000e-04   p_cons 1.304348e-05   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.537021e-05	k: 0	n:240000
Cons ci ratio: 1.959980e+00	ci left: 2.577808e-06	ci right 3.652987e-05	k: 3	n:240000
KS ci ratio: 2.820537e-01	ci left: 6.908743e-04	ci right 9.214570e-04	k: 192	n:240000
SLC2A6   240000 perm   59 sec   (4099 perm/sec)   p_kst 8.000000e-04   p_cons 1.250000e-05   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.475541e-05	k: 0	n:250000
Cons ci ratio: 1.959980e+00	ci left: 2.474695e-06	ci right 3.506869e-05	k: 3	n:250000
KS ci ratio: 2.730062e-01	ci left: 7.116228e-04	ci right 9.402060e-04	k: 205	n:250000
SLC2A6   250000 perm   62 sec   (4041 perm/sec)   p_kst 8.200000e-04   p_cons 1.200000e-05   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.418790e-05	k: 0	n:260000
Cons ci ratio: 1.959981e+00	ci left: 2.379514e-06	ci right 3.371991e-05	k: 3	n:260000
KS ci ratio: 2.710425e-01	ci left: 6.950034e-04	ci right 9.163690e-04	k: 208	n:260000
SLC2A6   260000 perm   65 sec   (3984 perm/sec)   p_kst 8.000000e-04   p_cons 1.153846e-05   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.366242e-05	k: 0	n:270000
Cons ci ratio: 1.959982e+00	ci left: 2.291384e-06	ci right 3.247103e-05	k: 3	n:270000
KS ci ratio: 2.653882e-01	ci left: 7.003550e-04	ci right 9.179983e-04	k: 217	n:270000
SLC2A6   270000 perm   69 sec   (3929 perm/sec)   p_kst 8.037037e-04   p_cons 1.111111e-05   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.317448e-05	k: 0	n:280000
Cons ci ratio: 1.959983e+00	ci left: 2.209549e-06	ci right 3.131137e-05	k: 3	n:280000
KS ci ratio: 2.606488e-01	ci left: 7.020303e-04	ci right 9.156634e-04	k: 225	n:280000
SLC2A6   280000 perm   72 sec   (3873 perm/sec)   p_kst 8.035714e-04   p_cons 1.071429e-05   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.272019e-05	k: 0	n:290000
Cons ci ratio: 1.959983e+00	ci left: 2.133357e-06	ci right 3.023168e-05	k: 3	n:290000
KS ci ratio: 2.556085e-01	ci left: 7.068494e-04	ci right 9.171264e-04	k: 234	n:290000
SLC2A6   290000 perm   76 sec   (3818 perm/sec)   p_kst 8.068966e-04   p_cons 1.034483e-05   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.229619e-05	k: 0	n:300000
Cons ci ratio: 1.959984e+00	ci left: 2.062245e-06	ci right 2.922396e-05	k: 3	n:300000
KS ci ratio: 2.508498e-01	ci left: 7.113842e-04	ci right 9.184551e-04	k: 243	n:300000
SLC2A6   300000 perm   80 sec   (3756 perm/sec)   p_kst 8.100000e-04   p_cons 1.000000e-05   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.189954e-05	k: 0	n:310000
Cons ci ratio: 1.959984e+00	ci left: 1.995721e-06	ci right 2.828126e-05	k: 3	n:310000
KS ci ratio: 2.468360e-01	ci left: 7.126336e-04	ci right 9.162399e-04	k: 251	n:310000
SLC2A6   310000 perm   84 sec   (3705 perm/sec)   p_kst 8.096774e-04   p_cons 9.677419e-06   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.152768e-05	k: 0	n:320000
Cons ci ratio: 1.959985e+00	ci left: 1.933355e-06	ci right 2.739748e-05	k: 3	n:320000
KS ci ratio: 2.430089e-01	ci left: 7.138297e-04	ci right 9.141387e-04	k: 259	n:320000
SLC2A6   320000 perm   88 sec   (3657 perm/sec)   p_kst 8.093750e-04   p_cons 9.375000e-06   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.117836e-05	k: 0	n:330000
Cons ci ratio: 1.959985e+00	ci left: 1.874768e-06	ci right 2.656726e-05	k: 3	n:330000
KS ci ratio: 2.384656e-01	ci left: 7.206741e-04	ci right 9.185644e-04	k: 269	n:330000
SLC2A6   330000 perm   91 sec   (3611 perm/sec)   p_kst 8.151515e-04   p_cons 9.090909e-06   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.084959e-05	k: 0	n:340000
Cons ci ratio: 1.959986e+00	ci left: 1.819628e-06	ci right 2.578588e-05	k: 3	n:340000
KS ci ratio: 2.350095e-01	ci left: 7.216118e-04	ci right 9.164702e-04	k: 277	n:340000
SLC2A6   340000 perm   95 sec   (3564 perm/sec)   p_kst 8.147059e-04   p_cons 8.823529e-06   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.053960e-05	k: 0	n:350000
Cons ci ratio: 1.959986e+00	ci left: 1.767638e-06	ci right 2.504915e-05	k: 3	n:350000
KS ci ratio: 2.325145e-01	ci left: 7.171330e-04	ci right 9.084307e-04	k: 283	n:350000
SLC2A6   350000 perm   100 sec   (3515 perm/sec)   p_kst 8.085714e-04   p_cons 8.571429e-06   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.024683e-05	k: 0	n:360000
Cons ci ratio: 1.959986e+00	ci left: 1.718537e-06	ci right 2.435334e-05	k: 3	n:360000
KS ci ratio: 2.300973e-01	ci left: 7.129134e-04	ci right 9.008275e-04	k: 289	n:360000
SLC2A6   360000 perm   104 sec   (3475 perm/sec)   p_kst 8.027778e-04   p_cons 8.333333e-06   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 9.969895e-06	k: 0	n:370000
Cons ci ratio: 1.959987e+00	ci left: 1.672090e-06	ci right 2.369515e-05	k: 3	n:370000
KS ci ratio: 2.273699e-01	ci left: 7.114803e-04	ci right 8.964820e-04	k: 296	n:370000
SLC2A6   370000 perm   108 sec   (3435 perm/sec)   p_kst 8.000000e-04   p_cons 8.108108e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.707530e-06	k: 0	n:380000
Cons ci ratio: 1.959987e+00	ci left: 1.628087e-06	ci right 2.307160e-05	k: 3	n:380000
KS ci ratio: 2.247372e-01	ci left: 7.101351e-04	ci right 8.923529e-04	k: 303	n:380000
SLC2A6   380000 perm   112 sec   (3396 perm/sec)   p_kst 7.973684e-04   p_cons 7.894737e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.458621e-06	k: 0	n:390000
Cons ci ratio: 1.959987e+00	ci left: 1.586342e-06	ci right 2.248002e-05	k: 3	n:390000
KS ci ratio: 2.214823e-01	ci left: 7.137140e-04	ci right 8.938363e-04	k: 312	n:390000
SLC2A6   390000 perm   116 sec   (3357 perm/sec)   p_kst 8.000000e-04   p_cons 7.692308e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.222156e-06	k: 0	n:400000
Cons ci ratio: 1.959988e+00	ci left: 1.546683e-06	ci right 2.191802e-05	k: 3	n:400000
KS ci ratio: 2.200816e-01	ci left: 7.053178e-04	ci right 8.820430e-04	k: 316	n:400000
SLC2A6   400000 perm   120 sec   (3320 perm/sec)   p_kst 7.900000e-04   p_cons 7.500000e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 8.997226e-06	k: 0	n:410000
Cons ci ratio: 1.959988e+00	ci left: 1.508959e-06	ci right 2.138344e-05	k: 3	n:410000
KS ci ratio: 2.153754e-01	ci left: 7.204000e-04	ci right 8.965343e-04	k: 330	n:410000
SLC2A6   410000 perm   125 sec   (3282 perm/sec)   p_kst 8.048780e-04   p_cons 7.317073e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.783008e-06	k: 0	n:420000
Cons ci ratio: 1.959988e+00	ci left: 1.473031e-06	ci right 2.087432e-05	k: 3	n:420000
KS ci ratio: 2.125055e-01	ci left: 7.235283e-04	ci right 8.977631e-04	k: 339	n:420000
SLC2A6   420000 perm   129 sec   (3247 perm/sec)   p_kst 8.071429e-04   p_cons 7.142857e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.578753e-06	k: 0	n:430000
Cons ci ratio: 1.959989e+00	ci left: 1.438775e-06	ci right 2.038887e-05	k: 3	n:430000
KS ci ratio: 2.115754e-01	ci left: 7.133079e-04	ci right 8.842321e-04	k: 342	n:430000
SLC2A6   430000 perm   134 sec   (3209 perm/sec)   p_kst 7.953488e-04   p_cons 6.976744e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.383782e-06	k: 0	n:440000
Cons ci ratio: 1.959989e+00	ci left: 1.406075e-06	ci right 1.992549e-05	k: 3	n:440000
KS ci ratio: 2.091504e-01	ci left: 7.143204e-04	ci right 8.832741e-04	k: 350	n:440000
SLC2A6   440000 perm   139 sec   (3172 perm/sec)   p_kst 7.954545e-04   p_cons 6.818182e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.197476e-06	k: 0	n:450000
Cons ci ratio: 1.959989e+00	ci left: 1.374829e-06	ci right 1.948270e-05	k: 3	n:450000
KS ci ratio: 2.073859e-01	ci left: 7.110844e-04	ci right 8.776738e-04	k: 356	n:450000
SLC2A6   450000 perm   143 sec   (3137 perm/sec)   p_kst 7.911111e-04   p_cons 6.666667e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.019271e-06	k: 0	n:460000
Cons ci ratio: 1.959989e+00	ci left: 1.344941e-06	ci right 1.905917e-05	k: 3	n:460000
KS ci ratio: 2.056652e-01	ci left: 7.079949e-04	ci right 8.723112e-04	k: 362	n:460000
SLC2A6   460000 perm   148 sec   (3102 perm/sec)   p_kst 7.869565e-04   p_cons 6.521739e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.848649e-06	k: 0	n:470000
Cons ci ratio: 1.959990e+00	ci left: 1.316326e-06	ci right 1.865366e-05	k: 3	n:470000
KS ci ratio: 2.034357e-01	ci left: 7.090807e-04	ci right 8.716432e-04	k: 370	n:470000
SLC2A6   470000 perm   153 sec   (3068 perm/sec)   p_kst 7.872340e-04   p_cons 6.382979e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.685136e-06	k: 0	n:480000
Cons ci ratio: 1.959990e+00	ci left: 1.288902e-06	ci right 1.826504e-05	k: 3	n:480000
KS ci ratio: 2.010119e-01	ci left: 7.121089e-04	ci right 8.731820e-04	k: 379	n:480000
SLC2A6   480000 perm   158 sec   (3036 perm/sec)   p_kst 7.895833e-04   p_cons 6.250000e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.528297e-06	k: 0	n:490000
Cons ci ratio: 1.959990e+00	ci left: 1.262598e-06	ci right 1.789229e-05	k: 3	n:490000
KS ci ratio: 1.989288e-01	ci left: 7.130852e-04	ci right 8.725048e-04	k: 387	n:490000
SLC2A6   490000 perm   163 sec   (3006 perm/sec)   p_kst 7.897959e-04   p_cons 6.122449e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.377732e-06	k: 0	n:500000
Cons ci ratio: 1.959990e+00	ci left: 1.237346e-06	ci right 1.753445e-05	k: 3	n:500000
KS ci ratio: 1.966608e-01	ci left: 7.159322e-04	ci right 8.739449e-04	k: 396	n:500000
SLC2A6   500000 perm   168 sec   (2976 perm/sec)   p_kst 7.920000e-04   p_cons 6.000000e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.233071e-06	k: 0	n:510000
Cons ci ratio: 1.959990e+00	ci left: 1.213084e-06	ci right 1.719063e-05	k: 3	n:510000
KS ci ratio: 1.939911e-01	ci left: 7.224084e-04	ci right 8.794305e-04	k: 407	n:510000
SLC2A6   510000 perm   173 sec   (2948 perm/sec)   p_kst 7.980392e-04   p_cons 5.882353e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.093974e-06	k: 0	n:520000
Cons ci ratio: 1.959991e+00	ci left: 1.189756e-06	ci right 1.686005e-05	k: 3	n:520000
KS ci ratio: 1.930478e-01	ci left: 7.158353e-04	ci right 8.705832e-04	k: 411	n:520000
SLC2A6   520000 perm   178 sec   (2916 perm/sec)   p_kst 7.903846e-04   p_cons 5.769231e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.960126e-06	k: 0	n:530000
Cons ci ratio: 1.959991e+00	ci left: 1.167307e-06	ci right 1.654193e-05	k: 3	n:530000
KS ci ratio: 1.909730e-01	ci left: 7.184940e-04	ci right 8.719535e-04	k: 420	n:530000
SLC2A6   530000 perm   184 sec   (2884 perm/sec)   p_kst 7.924528e-04   p_cons 5.660377e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.831235e-06	k: 0	n:540000
Cons ci ratio: 1.959991e+00	ci left: 1.145691e-06	ci right 1.623560e-05	k: 3	n:540000
KS ci ratio: 1.894051e-01	ci left: 7.175342e-04	ci right 8.693857e-04	k: 427	n:540000
SLC2A6   540000 perm   189 sec   (2854 perm/sec)   p_kst 7.907407e-04   p_cons 5.555556e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.707031e-06	k: 0	n:550000
Cons ci ratio: 1.959991e+00	ci left: 1.124860e-06	ci right 1.594041e-05	k: 3	n:550000
KS ci ratio: 1.889651e-01	ci left: 7.079520e-04	ci right 8.573875e-04	k: 429	n:550000
SLC2A6   550000 perm   195 sec   (2823 perm/sec)   p_kst 7.800000e-04   p_cons 5.454545e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.587263e-06	k: 0	n:560000
Cons ci ratio: 1.959991e+00	ci left: 1.104773e-06	ci right 1.565576e-05	k: 3	n:560000
KS ci ratio: 1.872314e-01	ci left: 7.089230e-04	ci right 8.570346e-04	k: 437	n:560000
SLC2A6   560000 perm   201 sec   (2791 perm/sec)   p_kst 7.803571e-04   p_cons 5.357143e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.471697e-06	k: 0	n:570000
Cons ci ratio: 1.959991e+00	ci left: 1.085391e-06	ci right 1.538110e-05	k: 3	n:570000
KS ci ratio: 1.853368e-01	ci left: 7.115390e-04	ci right 8.585238e-04	k: 446	n:570000
SLC2A6   570000 perm   206 sec   (2764 perm/sec)   p_kst 7.824561e-04   p_cons 5.263158e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.360117e-06	k: 0	n:580000
Cons ci ratio: 1.959992e+00	ci left: 1.066677e-06	ci right 1.511591e-05	k: 3	n:580000
KS ci ratio: 1.841056e-01	ci left: 7.091375e-04	ci right 8.545444e-04	k: 452	n:580000
SLC2A6   580000 perm   212 sec   (2737 perm/sec)   p_kst 7.793103e-04   p_cons 5.172414e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.252319e-06	k: 0	n:590000
Cons ci ratio: 1.959992e+00	ci left: 1.048598e-06	ci right 1.485971e-05	k: 3	n:590000
KS ci ratio: 1.817138e-01	ci left: 7.165263e-04	ci right 8.613295e-04	k: 464	n:590000
SLC2A6   590000 perm   218 sec   (2710 perm/sec)   p_kst 7.864407e-04   p_cons 5.084746e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.148114e-06	k: 0	n:600000
Cons ci ratio: 1.959992e+00	ci left: 1.031121e-06	ci right 1.461205e-05	k: 3	n:600000
KS ci ratio: 1.803615e-01	ci left: 7.157221e-04	ci right 8.591688e-04	k: 471	n:600000
SLC2A6   600000 perm   224 sec   (2683 perm/sec)   p_kst 7.850000e-04   p_cons 5.000000e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 6.047325e-06	k: 0	n:610000
Cons ci ratio: 1.959992e+00	ci left: 1.014218e-06	ci right 1.437251e-05	k: 3	n:610000
KS ci ratio: 1.788521e-01	ci left: 7.165141e-04	ci right 8.587878e-04	k: 479	n:610000
SLC2A6   610000 perm   230 sec   (2656 perm/sec)   p_kst 7.852459e-04   p_cons 4.918033e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.949788e-06	k: 0	n:620000
Cons ci ratio: 1.959992e+00	ci left: 9.978594e-07	ci right 1.414070e-05	k: 3	n:620000
KS ci ratio: 1.766570e-01	ci left: 7.234514e-04	ci right 8.651512e-04	k: 491	n:620000
SLC2A6   620000 perm   236 sec   (2630 perm/sec)   p_kst 7.919355e-04   p_cons 4.838710e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.855347e-06	k: 0	n:630000
Cons ci ratio: 1.959992e+00	ci left: 9.820203e-07	ci right 1.391624e-05	k: 3	n:630000
KS ci ratio: 1.748883e-01	ci left: 7.271429e-04	ci right 8.679891e-04	k: 501	n:630000
SLC2A6   630000 perm   242 sec   (2604 perm/sec)   p_kst 7.952381e-04   p_cons 4.761905e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.763858e-06	k: 0	n:640000
Cons ci ratio: 1.959992e+00	ci left: 9.666762e-07	ci right 1.369880e-05	k: 3	n:640000
KS ci ratio: 1.738527e-01	ci left: 7.247470e-04	ci right 8.642106e-04	k: 507	n:640000
SLC2A6   640000 perm   248 sec   (2579 perm/sec)   p_kst 7.921875e-04   p_cons 4.687500e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.675183e-06	k: 0	n:650000
Cons ci ratio: 1.959992e+00	ci left: 9.518043e-07	ci right 1.348805e-05	k: 3	n:650000
KS ci ratio: 1.720001e-01	ci left: 7.297879e-04	ci right 8.685697e-04	k: 518	n:650000
SLC2A6   650000 perm   254 sec   (2554 perm/sec)   p_kst 7.969231e-04   p_cons 4.615385e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.589196e-06	k: 0	n:660000
Cons ci ratio: 1.959993e+00	ci left: 9.373830e-07	ci right 1.328369e-05	k: 3	n:660000
KS ci ratio: 1.698849e-01	ci left: 7.375850e-04	ci right 8.759481e-04	k: 531	n:660000
SLC2A6   660000 perm   261 sec   (2530 perm/sec)   p_kst 8.045455e-04   p_cons 4.545455e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.505775e-06	k: 0	n:670000
Cons ci ratio: 1.959993e+00	ci left: 9.233922e-07	ci right 1.308543e-05	k: 3	n:670000
KS ci ratio: 1.689352e-01	ci left: 7.351517e-04	ci right 8.722089e-04	k: 537	n:670000
SLC2A6   670000 perm   267 sec   (2507 perm/sec)   p_kst 8.014925e-04   p_cons 4.477612e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.424808e-06	k: 0	n:680000
Cons ci ratio: 1.753070e+00	ci left: 1.602745e-06	ci right 1.506109e-05	k: 4	n:680000
KS ci ratio: 1.678469e-01	ci left: 7.342009e-04	ci right 8.701099e-04	k: 544	n:680000
SLC2A6   680000 perm   274 sec   (2484 perm/sec)   p_kst 8.000000e-04   p_cons 5.882353e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.346188e-06	k: 0	n:690000
Cons ci ratio: 1.753070e+00	ci left: 1.579517e-06	ci right 1.484282e-05	k: 4	n:690000
KS ci ratio: 1.664778e-01	ci left: 7.360582e-04	ci right 8.710882e-04	k: 553	n:690000
SLC2A6   690000 perm   280 sec   (2461 perm/sec)   p_kst 8.014493e-04   p_cons 5.797101e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.269814e-06	k: 0	n:700000
Cons ci ratio: 1.753070e+00	ci left: 1.556953e-06	ci right 1.463078e-05	k: 4	n:700000
KS ci ratio: 1.661789e-01	ci left: 7.282811e-04	ci right 8.616204e-04	k: 555	n:700000
SLC2A6   700000 perm   287 sec   (2439 perm/sec)   p_kst 7.928571e-04   p_cons 5.714286e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.195591e-06	k: 0	n:710000
Cons ci ratio: 1.753070e+00	ci left: 1.535024e-06	ci right 1.442471e-05	k: 4	n:710000
KS ci ratio: 1.651427e-01	ci left: 7.274740e-04	ci right 8.597525e-04	k: 562	n:710000
SLC2A6   710000 perm   294 sec   (2416 perm/sec)   p_kst 7.915493e-04   p_cons 5.633803e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.123431e-06	k: 0	n:720000
Cons ci ratio: 1.753070e+00	ci left: 1.513704e-06	ci right 1.422437e-05	k: 4	n:720000
KS ci ratio: 1.645596e-01	ci left: 7.226964e-04	ci right 8.535962e-04	k: 566	n:720000
SLC2A6   720000 perm   301 sec   (2394 perm/sec)   p_kst 7.861111e-04   p_cons 5.555556e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.053247e-06	k: 0	n:730000
Cons ci ratio: 1.753070e+00	ci left: 1.492968e-06	ci right 1.402951e-05	k: 4	n:730000
KS ci ratio: 1.632688e-01	ci left: 7.246195e-04	ci right 8.547371e-04	k: 575	n:730000
SLC2A6   730000 perm   308 sec   (2372 perm/sec)   p_kst 7.876712e-04   p_cons 5.479452e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.984960e-06	k: 0	n:740000
Cons ci ratio: 1.753070e+00	ci left: 1.472793e-06	ci right 1.383993e-05	k: 4	n:740000
KS ci ratio: 1.615937e-01	ci left: 7.303846e-04	ci right 8.600612e-04	k: 587	n:740000
SLC2A6   740000 perm   315 sec   (2351 perm/sec)   p_kst 7.932432e-04   p_cons 5.405405e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.918494e-06	k: 0	n:750000
Cons ci ratio: 1.753070e+00	ci left: 1.453156e-06	ci right 1.365539e-05	k: 4	n:750000
KS ci ratio: 1.602367e-01	ci left: 7.334426e-04	ci right 8.624634e-04	k: 597	n:750000
SLC2A6   750000 perm   322 sec   (2330 perm/sec)   p_kst 7.960000e-04   p_cons 5.333333e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.853777e-06	k: 0	n:760000
Cons ci ratio: 1.753070e+00	ci left: 1.434035e-06	ci right 1.347572e-05	k: 4	n:760000
KS ci ratio: 1.587827e-01	ci left: 7.376882e-04	ci right 8.661660e-04	k: 608	n:760000
SLC2A6   760000 perm   329 sec   (2310 perm/sec)   p_kst 8.000000e-04   p_cons 5.263158e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.790741e-06	k: 0	n:770000
Cons ci ratio: 1.753070e+00	ci left: 1.415411e-06	ci right 1.330071e-05	k: 4	n:770000
KS ci ratio: 1.577499e-01	ci left: 7.380859e-04	ci right 8.657178e-04	k: 616	n:770000
SLC2A6   770000 perm   336 sec   (2292 perm/sec)   p_kst 8.000000e-04   p_cons 5.194805e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.729321e-06	k: 0	n:780000
Cons ci ratio: 1.600326e+00	ci left: 2.081396e-06	ci right 1.495934e-05	k: 5	n:780000
KS ci ratio: 1.568627e-01	ci left: 7.372444e-04	ci right 8.639462e-04	k: 623	n:780000
SLC2A6   780000 perm   343 sec   (2275 perm/sec)   p_kst 7.987179e-04   p_cons 6.410256e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.669457e-06	k: 0	n:790000
Cons ci ratio: 1.600326e+00	ci left: 2.055049e-06	ci right 1.476998e-05	k: 5	n:790000
KS ci ratio: 1.553754e-01	ci left: 7.425088e-04	ci right 8.687928e-04	k: 635	n:790000
SLC2A6   790000 perm   350 sec   (2257 perm/sec)   p_kst 8.037975e-04   p_cons 6.329114e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.611089e-06	k: 0	n:800000
Cons ci ratio: 1.600326e+00	ci left: 2.029361e-06	ci right 1.458535e-05	k: 5	n:800000
KS ci ratio: 1.544074e-01	ci left: 7.428399e-04	ci right 8.683202e-04	k: 643	n:800000
SLC2A6   800000 perm   357 sec   (2240 perm/sec)   p_kst 8.037500e-04   p_cons 6.250000e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.554162e-06	k: 0	n:810000
Cons ci ratio: 1.600326e+00	ci left: 2.004307e-06	ci right 1.440529e-05	k: 5	n:810000
KS ci ratio: 1.528716e-01	ci left: 7.491016e-04	ci right 8.742659e-04	k: 656	n:810000
SLC2A6   810000 perm   365 sec   (2220 perm/sec)   p_kst 8.098765e-04   p_cons 6.172840e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.498623e-06	k: 0	n:820000
Cons ci ratio: 1.600326e+00	ci left: 1.979864e-06	ci right 1.422962e-05	k: 5	n:820000
KS ci ratio: 1.516075e-01	ci left: 7.528699e-04	ci right 8.775292e-04	k: 667	n:820000
SLC2A6   820000 perm   372 sec   (2202 perm/sec)   p_kst 8.134146e-04   p_cons 6.097561e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.444423e-06	k: 0	n:830000
Cons ci ratio: 1.600327e+00	ci left: 1.956010e-06	ci right 1.405817e-05	k: 5	n:830000
KS ci ratio: 1.502635e-01	ci left: 7.577111e-04	ci right 8.819598e-04	k: 679	n:830000
SLC2A6   830000 perm   380 sec   (2184 perm/sec)   p_kst 8.180723e-04   p_cons 6.024096e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.391514e-06	k: 0	n:840000
Cons ci ratio: 1.600327e+00	ci left: 1.932725e-06	ci right 1.389082e-05	k: 5	n:840000
KS ci ratio: 1.491705e-01	ci left: 7.601496e-04	ci right 8.838106e-04	k: 689	n:840000
SLC2A6   840000 perm   388 sec   (2168 perm/sec)   p_kst 8.202381e-04   p_cons 5.952381e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.339849e-06	k: 0	n:850000
Cons ci ratio: 1.600327e+00	ci left: 1.909987e-06	ci right 1.372740e-05	k: 5	n:850000
KS ci ratio: 1.484196e-01	ci left: 7.591354e-04	ci right 8.819546e-04	k: 696	n:850000
SLC2A6   850000 perm   396 sec   (2149 perm/sec)   p_kst 8.188235e-04   p_cons 5.882353e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.289386e-06	k: 0	n:860000
Cons ci ratio: 1.481614e+00	ci left: 2.560346e-06	ci right 1.518537e-05	k: 6	n:860000
KS ci ratio: 1.475751e-01	ci left: 7.592661e-04	ci right 8.813459e-04	k: 704	n:860000
SLC2A6   860000 perm   403 sec   (2133 perm/sec)   p_kst 8.186047e-04   p_cons 6.976744e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.240082e-06	k: 0	n:870000
Cons ci ratio: 1.481614e+00	ci left: 2.530917e-06	ci right 1.501083e-05	k: 6	n:870000
KS ci ratio: 1.462326e-01	ci left: 7.649323e-04	ci right 8.867066e-04	k: 717	n:870000
SLC2A6   870000 perm   411 sec   (2116 perm/sec)   p_kst 8.241379e-04   p_cons 6.896552e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.191900e-06	k: 0	n:880000
Cons ci ratio: 1.481614e+00	ci left: 2.502157e-06	ci right 1.484025e-05	k: 6	n:880000
KS ci ratio: 1.453246e-01	ci left: 7.660942e-04	ci right 8.872304e-04	k: 726	n:880000
SLC2A6   880000 perm   419 sec   (2101 perm/sec)   p_kst 8.250000e-04   p_cons 6.818182e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.144800e-06	k: 0	n:890000
Cons ci ratio: 1.481614e+00	ci left: 2.474042e-06	ci right 1.467351e-05	k: 6	n:890000
KS ci ratio: 1.444333e-01	ci left: 7.672322e-04	ci right 8.877402e-04	k: 735	n:890000
SLC2A6   890000 perm   427 sec   (2086 perm/sec)   p_kst 8.258427e-04   p_cons 6.741573e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.098747e-06	k: 0	n:900000
Cons ci ratio: 1.385922e+00	ci left: 3.127076e-06	ci right 1.602513e-05	k: 7	n:900000
KS ci ratio: 1.435582e-01	ci left: 7.683472e-04	ci right 8.882364e-04	k: 744	n:900000
SLC2A6   900000 perm   435 sec   (2071 perm/sec)   p_kst 8.266667e-04   p_cons 7.777778e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.053705e-06	k: 0	n:910000
Cons ci ratio: 1.385922e+00	ci left: 3.092712e-06	ci right 1.584903e-05	k: 7	n:910000
KS ci ratio: 1.431746e-01	ci left: 7.641416e-04	ci right 8.830289e-04	k: 748	n:910000
SLC2A6   910000 perm   443 sec   (2056 perm/sec)   p_kst 8.219780e-04   p_cons 7.692308e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.009644e-06	k: 0	n:920000
Cons ci ratio: 1.385923e+00	ci left: 3.059096e-06	ci right 1.567676e-05	k: 7	n:920000
KS ci ratio: 1.421345e-01	ci left: 7.673656e-04	ci right 8.858136e-04	k: 759	n:920000
SLC2A6   920000 perm   451 sec   (2041 perm/sec)   p_kst 8.250000e-04   p_cons 7.608696e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.966529e-06	k: 0	n:930000
Cons ci ratio: 1.385923e+00	ci left: 3.026202e-06	ci right 1.550819e-05	k: 7	n:930000
KS ci ratio: 1.413003e-01	ci left: 7.684487e-04	ci right 8.863090e-04	k: 768	n:930000
SLC2A6   930000 perm   459 sec   (2026 perm/sec)   p_kst 8.258065e-04   p_cons 7.526882e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.924332e-06	k: 0	n:940000
Cons ci ratio: 1.385923e+00	ci left: 2.994008e-06	ci right 1.534321e-05	k: 7	n:940000
KS ci ratio: 1.405710e-01	ci left: 7.684842e-04	ci right 8.856907e-04	k: 776	n:940000
SLC2A6   940000 perm   467 sec   (2012 perm/sec)   p_kst 8.255319e-04   p_cons 7.446809e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.883023e-06	k: 0	n:950000
Cons ci ratio: 1.385923e+00	ci left: 2.962492e-06	ci right 1.518170e-05	k: 7	n:950000
KS ci ratio: 1.399421e-01	ci left: 7.675048e-04	ci right 8.839945e-04	k: 783	n:950000
SLC2A6   950000 perm   476 sec   (1997 perm/sec)   p_kst 8.242105e-04   p_cons 7.368421e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.842575e-06	k: 0	n:960000
Cons ci ratio: 1.385923e+00	ci left: 2.931633e-06	ci right 1.502356e-05	k: 7	n:960000
KS ci ratio: 1.388830e-01	ci left: 7.715741e-04	ci right 8.877218e-04	k: 795	n:960000
SLC2A6   960000 perm   484 sec   (1982 perm/sec)   p_kst 8.281250e-04   p_cons 7.291667e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.802961e-06	k: 0	n:970000
Cons ci ratio: 1.306660e+00	ci left: 3.560658e-06	ci right 1.625065e-05	k: 8	n:970000
KS ci ratio: 1.383627e-01	ci left: 7.695907e-04	ci right 8.849701e-04	k: 801	n:970000
SLC2A6   970000 perm   493 sec   (1968 perm/sec)   p_kst 8.257732e-04   p_cons 8.247423e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.764156e-06	k: 0	n:980000
Cons ci ratio: 1.306660e+00	ci left: 3.524325e-06	ci right 1.608482e-05	k: 8	n:980000
KS ci ratio: 1.375928e-01	ci left: 7.706044e-04	ci right 8.854402e-04	k: 810	n:980000
SLC2A6   980000 perm   502 sec   (1953 perm/sec)   p_kst 8.265306e-04   p_cons 8.163265e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.726134e-06	k: 0	n:990000
Cons ci ratio: 1.306660e+00	ci left: 3.488726e-06	ci right 1.592235e-05	k: 8	n:990000
KS ci ratio: 1.369191e-01	ci left: 7.706238e-04	ci right 8.848545e-04	k: 818	n:990000
SLC2A6   990000 perm   510 sec   (1940 perm/sec)   p_kst 8.262626e-04   p_cons 8.080808e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.688873e-06	k: 0	n:1000000
Cons ci ratio: 1.306660e+00	ci left: 3.453838e-06	ci right 1.576313e-05	k: 8	n:1000000
KS ci ratio: 1.360086e-01	ci left: 7.735421e-04	ci right 8.873812e-04	k: 829	n:1000000
SLC2A6   1000000 perm   519 sec   (1926 perm/sec)   p_kst 8.290000e-04   p_cons 8.000000e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.652349e-06	k: 0	n:1010000
Cons ci ratio: 1.306660e+00	ci left: 3.419642e-06	ci right 1.560706e-05	k: 8	n:1010000
KS ci ratio: 1.353579e-01	ci left: 7.735352e-04	ci right 8.867847e-04	k: 837	n:1010000
SLC2A6   1010000 perm   528 sec   (1914 perm/sec)   p_kst 8.287129e-04   p_cons 7.920792e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.616542e-06	k: 0	n:1020000
Cons ci ratio: 1.239606e+00	ci left: 4.034687e-06	ci right 1.674974e-05	k: 9	n:1020000
KS ci ratio: 1.347962e-01	ci left: 7.725823e-04	ci right 8.851853e-04	k: 844	n:1020000
SLC2A6   1020000 perm   537 sec   (1901 perm/sec)   p_kst 8.274510e-04   p_cons 8.823529e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.581430e-06	k: 0	n:1030000
Cons ci ratio: 1.239606e+00	ci left: 3.995515e-06	ci right 1.658712e-05	k: 9	n:1030000
KS ci ratio: 1.340840e-01	ci left: 7.735256e-04	ci right 8.856228e-04	k: 853	n:1030000
SLC2A6   1030000 perm   545 sec   (1889 perm/sec)   p_kst 8.281553e-04   p_cons 8.737864e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.546993e-06	k: 0	n:1040000
Cons ci ratio: 1.239606e+00	ci left: 3.957097e-06	ci right 1.642763e-05	k: 9	n:1040000
KS ci ratio: 1.331515e-01	ci left: 7.772407e-04	ci right 8.890311e-04	k: 865	n:1040000
SLC2A6   1040000 perm   554 sec   (1876 perm/sec)   p_kst 8.317308e-04   p_cons 8.653846e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.513212e-06	k: 0	n:1050000
Cons ci ratio: 1.239606e+00	ci left: 3.919410e-06	ci right 1.627118e-05	k: 9	n:1050000
KS ci ratio: 1.323892e-01	ci left: 7.790459e-04	ci right 8.904040e-04	k: 875	n:1050000
SLC2A6   1050000 perm   563 sec   (1864 perm/sec)   p_kst 8.333333e-04   p_cons 8.571429e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.480069e-06	k: 0	n:1060000
Cons ci ratio: 1.239606e+00	ci left: 3.882435e-06	ci right 1.611768e-05	k: 9	n:1060000
KS ci ratio: 1.316399e-01	ci left: 7.808189e-04	ci right 8.917493e-04	k: 885	n:1060000
SLC2A6   1060000 perm   573 sec   (1850 perm/sec)   p_kst 8.349057e-04   p_cons 8.490566e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.447545e-06	k: 0	n:1070000
Cons ci ratio: 1.239606e+00	ci left: 3.846150e-06	ci right 1.596705e-05	k: 9	n:1070000
KS ci ratio: 1.311965e-01	ci left: 7.789446e-04	ci right 8.892069e-04	k: 891	n:1070000
SLC2A6   1070000 perm   583 sec   (1836 perm/sec)   p_kst 8.327103e-04   p_cons 8.411215e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.415623e-06	k: 0	n:1080000
Cons ci ratio: 1.181918e+00	ci left: 4.440183e-06	ci right 1.702804e-05	k: 10	n:1080000
KS ci ratio: 1.308306e-01	ci left: 7.762099e-04	ci right 8.857549e-04	k: 896	n:1080000
SLC2A6   1080000 perm   592 sec   (1824 perm/sec)   p_kst 8.296296e-04   p_cons 9.259259e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.384287e-06	k: 0	n:1090000
Cons ci ratio: 1.181918e+00	ci left: 4.399448e-06	ci right 1.687182e-05	k: 10	n:1090000
KS ci ratio: 1.303231e-01	ci left: 7.753010e-04	ci right 8.842604e-04	k: 903	n:1090000
SLC2A6   1090000 perm   601 sec   (1812 perm/sec)   p_kst 8.284404e-04   p_cons 9.174312e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.353521e-06	k: 0	n:1100000
Cons ci ratio: 1.181918e+00	ci left: 4.359453e-06	ci right 1.671844e-05	k: 10	n:1100000
KS ci ratio: 1.298929e-01	ci left: 7.735297e-04	ci right 8.818538e-04	k: 909	n:1100000
SLC2A6   1100000 perm   611 sec   (1801 perm/sec)   p_kst 8.263636e-04   p_cons 9.090909e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.323309e-06	k: 0	n:1110000
Cons ci ratio: 1.181918e+00	ci left: 4.320178e-06	ci right 1.656783e-05	k: 10	n:1110000
KS ci ratio: 1.289048e-01	ci left: 7.787655e-04	ci right 8.869296e-04	k: 923	n:1110000
SLC2A6   1110000 perm   620 sec   (1790 perm/sec)   p_kst 8.315315e-04   p_cons 9.009009e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.293637e-06	k: 0	n:1120000
Cons ci ratio: 1.181918e+00	ci left: 4.281605e-06	ci right 1.641990e-05	k: 10	n:1120000
KS ci ratio: 1.283504e-01	ci left: 7.787252e-04	ci right 8.863832e-04	k: 931	n:1120000
SLC2A6   1120000 perm   630 sec   (1779 perm/sec)   p_kst 8.312500e-04   p_cons 8.928571e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.264490e-06	k: 0	n:1130000
Cons ci ratio: 1.181918e+00	ci left: 4.243715e-06	ci right 1.627459e-05	k: 10	n:1130000
KS ci ratio: 1.274642e-01	ci left: 7.829703e-04	ci right 8.904113e-04	k: 944	n:1130000
SLC2A6   1130000 perm   639 sec   (1768 perm/sec)   p_kst 8.353982e-04   p_cons 8.849558e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.235854e-06	k: 0	n:1140000
Cons ci ratio: 1.181918e+00	ci left: 4.206489e-06	ci right 1.613183e-05	k: 10	n:1140000
KS ci ratio: 1.271285e-01	ci left: 7.803483e-04	ci right 8.871263e-04	k: 949	n:1140000
SLC2A6   1140000 perm   649 sec   (1757 perm/sec)   p_kst 8.324561e-04   p_cons 8.771930e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.207716e-06	k: 0	n:1150000
Cons ci ratio: 1.181918e+00	ci left: 4.169911e-06	ci right 1.599156e-05	k: 10	n:1150000
KS ci ratio: 1.265966e-01	ci left: 7.802985e-04	ci right 8.865893e-04	k: 957	n:1150000
SLC2A6   1150000 perm   659 sec   (1746 perm/sec)   p_kst 8.321739e-04   p_cons 8.695652e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.180063e-06	k: 0	n:1160000
Cons ci ratio: 1.181918e+00	ci left: 4.133963e-06	ci right 1.585370e-05	k: 10	n:1160000
KS ci ratio: 1.260714e-01	ci left: 7.802504e-04	ci right 8.860607e-04	k: 965	n:1160000
SLC2A6   1160000 perm   669 sec   (1735 perm/sec)   p_kst 8.318966e-04   p_cons 8.620690e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.152883e-06	k: 0	n:1170000
Cons ci ratio: 1.181918e+00	ci left: 4.098630e-06	ci right 1.571820e-05	k: 10	n:1170000
KS ci ratio: 1.249124e-01	ci left: 7.884834e-04	ci right 8.943546e-04	k: 983	n:1170000
SLC2A6   1170000 perm   679 sec   (1723 perm/sec)   p_kst 8.401709e-04   p_cons 8.547009e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.126164e-06	k: 0	n:1180000
Cons ci ratio: 1.181918e+00	ci left: 4.063896e-06	ci right 1.558499e-05	k: 10	n:1180000
KS ci ratio: 1.242824e-01	ci left: 7.900118e-04	ci right 8.955139e-04	k: 993	n:1180000
SLC2A6   1180000 perm   689 sec   (1712 perm/sec)   p_kst 8.415254e-04   p_cons 8.474576e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.099894e-06	k: 0	n:1190000
Cons ci ratio: 1.181919e+00	ci left: 4.029746e-06	ci right 1.545403e-05	k: 10	n:1190000
KS ci ratio: 1.237853e-01	ci left: 7.898872e-04	ci right 8.949197e-04	k: 1001	n:1190000
SLC2A6   1190000 perm   699 sec   (1702 perm/sec)   p_kst 8.411765e-04   p_cons 8.403361e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.074061e-06	k: 0	n:1200000
Cons ci ratio: 1.181919e+00	ci left: 3.996164e-06	ci right 1.532524e-05	k: 10	n:1200000
KS ci ratio: 1.234165e-01	ci left: 7.881502e-04	ci right 8.926166e-04	k: 1007	n:1200000
SLC2A6   1200000 perm   709 sec   (1692 perm/sec)   p_kst 8.391667e-04   p_cons 8.333333e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.048656e-06	k: 0	n:1210000
Cons ci ratio: 1.181919e+00	ci left: 3.963138e-06	ci right 1.519859e-05	k: 10	n:1210000
KS ci ratio: 1.223883e-01	ci left: 7.952544e-04	ci right 8.997207e-04	k: 1024	n:1210000
SLC2A6   1210000 perm   719 sec   (1682 perm/sec)   p_kst 8.462810e-04   p_cons 8.264463e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.023667e-06	k: 0	n:1220000
Cons ci ratio: 1.181919e+00	ci left: 3.930653e-06	ci right 1.507401e-05	k: 10	n:1220000
KS ci ratio: 1.217367e-01	ci left: 7.974770e-04	ci right 9.016375e-04	k: 1035	n:1220000
SLC2A6   1220000 perm   730 sec   (1672 perm/sec)   p_kst 8.483607e-04   p_cons 8.196721e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.999084e-06	k: 0	n:1230000
Cons ci ratio: 1.181919e+00	ci left: 3.898697e-06	ci right 1.495146e-05	k: 10	n:1230000
KS ci ratio: 1.212694e-01	ci left: 7.972999e-04	ci right 9.010087e-04	k: 1043	n:1230000
SLC2A6   1230000 perm   740 sec   (1662 perm/sec)   p_kst 8.479675e-04   p_cons 8.130081e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.974898e-06	k: 0	n:1240000
Cons ci ratio: 1.181919e+00	ci left: 3.867256e-06	ci right 1.483088e-05	k: 10	n:1240000
KS ci ratio: 1.204641e-01	ci left: 8.018191e-04	ci right 9.053739e-04	k: 1057	n:1240000
SLC2A6   1240000 perm   751 sec   (1652 perm/sec)   p_kst 8.524194e-04   p_cons 8.064516e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.951099e-06	k: 0	n:1250000
Cons ci ratio: 1.181919e+00	ci left: 3.836317e-06	ci right 1.471224e-05	k: 10	n:1250000
KS ci ratio: 1.198988e-01	ci left: 8.031641e-04	ci right 9.063713e-04	k: 1067	n:1250000
SLC2A6   1250000 perm   761 sec   (1643 perm/sec)   p_kst 8.536000e-04   p_cons 8.000000e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.927678e-06	k: 0	n:1260000
Cons ci ratio: 1.181919e+00	ci left: 3.805870e-06	ci right 1.459547e-05	k: 10	n:1260000
KS ci ratio: 1.196751e-01	ci left: 7.998692e-04	ci right 9.024476e-04	k: 1071	n:1260000
SLC2A6   1260000 perm   772 sec   (1632 perm/sec)   p_kst 8.500000e-04   p_cons 7.936508e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.904625e-06	k: 0	n:1270000
Cons ci ratio: 1.181919e+00	ci left: 3.775903e-06	ci right 1.448055e-05	k: 10	n:1270000
KS ci ratio: 1.190107e-01	ci left: 8.027378e-04	ci right 9.050724e-04	k: 1083	n:1270000
SLC2A6   1270000 perm   783 sec   (1622 perm/sec)   p_kst 8.527559e-04   p_cons 7.874016e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.881933e-06	k: 0	n:1280000
Cons ci ratio: 1.181919e+00	ci left: 3.746404e-06	ci right 1.436742e-05	k: 10	n:1280000
KS ci ratio: 1.187373e-01	ci left: 8.002565e-04	ci right 9.020239e-04	k: 1088	n:1280000
SLC2A6   1280000 perm   794 sec   (1612 perm/sec)   p_kst 8.500000e-04   p_cons 7.812500e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.859592e-06	k: 0	n:1290000
Cons ci ratio: 1.131601e+00	ci left: 4.256721e-06	ci right 1.525734e-05	k: 11	n:1290000
KS ci ratio: 1.184658e-01	ci left: 7.978139e-04	ci right 8.990225e-04	k: 1093	n:1290000
SLC2A6   1290000 perm   805 sec   (1602 perm/sec)   p_kst 8.472868e-04   p_cons 8.527132e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.837596e-06	k: 0	n:1300000
Cons ci ratio: 1.131601e+00	ci left: 4.223977e-06	ci right 1.513998e-05	k: 11	n:1300000
KS ci ratio: 1.181424e-01	ci left: 7.961556e-04	ci right 8.968589e-04	k: 1099	n:1300000
SLC2A6   1300000 perm   816 sec   (1593 perm/sec)   p_kst 8.453846e-04   p_cons 8.461538e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.815935e-06	k: 0	n:1310000
Cons ci ratio: 1.131601e+00	ci left: 4.191733e-06	ci right 1.502441e-05	k: 11	n:1310000
KS ci ratio: 1.177151e-01	ci left: 7.960048e-04	ci right 8.962996e-04	k: 1107	n:1310000
SLC2A6   1310000 perm   827 sec   (1584 perm/sec)   p_kst 8.450382e-04   p_cons 8.396947e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.794602e-06	k: 0	n:1320000
Cons ci ratio: 1.131601e+00	ci left: 4.159977e-06	ci right 1.491059e-05	k: 11	n:1320000
KS ci ratio: 1.171874e-01	ci left: 7.973277e-04	ci right 8.973076e-04	k: 1117	n:1320000
SLC2A6   1320000 perm   838 sec   (1575 perm/sec)   p_kst 8.462121e-04   p_cons 8.333333e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.773590e-06	k: 0	n:1330000
Cons ci ratio: 1.131601e+00	ci left: 4.128699e-06	ci right 1.479848e-05	k: 11	n:1330000
KS ci ratio: 1.166668e-01	ci left: 7.986317e-04	ci right 8.982995e-04	k: 1127	n:1330000
SLC2A6   1330000 perm   849 sec   (1567 perm/sec)   p_kst 8.473684e-04   p_cons 8.270677e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.752891e-06	k: 0	n:1340000
Cons ci ratio: 1.131601e+00	ci left: 4.097888e-06	ci right 1.468804e-05	k: 11	n:1340000
KS ci ratio: 1.158477e-01	ci left: 8.042649e-04	ci right 9.038830e-04	k: 1143	n:1340000
SLC2A6   1340000 perm   860 sec   (1558 perm/sec)   p_kst 8.529851e-04   p_cons 8.208955e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.732500e-06	k: 0	n:1350000
Cons ci ratio: 1.087207e+00	ci left: 4.593027e-06	ci right 1.552705e-05	k: 12	n:1350000
KS ci ratio: 1.152447e-01	ci left: 8.069395e-04	ci right 9.063331e-04	k: 1155	n:1350000
SLC2A6   1350000 perm   871 sec   (1549 perm/sec)   p_kst 8.555556e-04   p_cons 8.888889e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.712408e-06	k: 0	n:1360000
Cons ci ratio: 1.087207e+00	ci left: 4.559254e-06	ci right 1.541288e-05	k: 12	n:1360000
KS ci ratio: 1.149964e-01	ci left: 8.045767e-04	ci right 9.034513e-04	k: 1160	n:1360000
SLC2A6   1360000 perm   883 sec   (1540 perm/sec)   p_kst 8.529412e-04   p_cons 8.823529e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.692609e-06	k: 0	n:1370000
Cons ci ratio: 1.087207e+00	ci left: 4.525975e-06	ci right 1.530038e-05	k: 12	n:1370000
KS ci ratio: 1.144066e-01	ci left: 8.072117e-04	ci right 9.058670e-04	k: 1172	n:1370000
SLC2A6   1370000 perm   894 sec   (1532 perm/sec)   p_kst 8.554745e-04   p_cons 8.759124e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.673097e-06	k: 0	n:1380000
Cons ci ratio: 1.087207e+00	ci left: 4.493178e-06	ci right 1.518951e-05	k: 12	n:1380000
KS ci ratio: 1.139701e-01	ci left: 8.076978e-04	ci right 9.060106e-04	k: 1181	n:1380000
SLC2A6   1380000 perm   905 sec   (1524 perm/sec)   p_kst 8.557971e-04   p_cons 8.695652e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.653867e-06	k: 0	n:1390000
Cons ci ratio: 1.047658e+00	ci left: 4.979831e-06	ci right 1.599304e-05	k: 13	n:1390000
KS ci ratio: 1.135864e-01	ci left: 8.074787e-04	ci right 9.054117e-04	k: 1189	n:1390000
SLC2A6   1390000 perm   917 sec   (1516 perm/sec)   p_kst 8.553957e-04   p_cons 9.352518e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.634910e-06	k: 0	n:1400000
Cons ci ratio: 1.012134e+00	ci left: 5.467103e-06	ci right 1.677824e-05	k: 14	n:1400000
KS ci ratio: 1.130179e-01	ci left: 8.100395e-04	ci right 9.077586e-04	k: 1201	n:1400000
SLC2A6   1400000 perm   929 sec   (1508 perm/sec)   p_kst 8.578571e-04   p_cons 1.000000e-05   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.616223e-06	k: 0	n:1410000
Cons ci ratio: 1.012134e+00	ci left: 5.428330e-06	ci right 1.665925e-05	k: 14	n:1410000
KS ci ratio: 1.126437e-01	ci left: 8.098082e-04	ci right 9.071545e-04	k: 1209	n:1410000
SLC2A6   1410000 perm   940 sec   (1500 perm/sec)   p_kst 8.574468e-04   p_cons 9.929078e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.597799e-06	k: 0	n:1420000
Cons ci ratio: 1.012134e+00	ci left: 5.390102e-06	ci right 1.654193e-05	k: 14	n:1420000
KS ci ratio: 1.121810e-01	ci left: 8.109496e-04	ci right 9.080062e-04	k: 1219	n:1420000
SLC2A6   1420000 perm   952 sec   (1492 perm/sec)   p_kst 8.584507e-04   p_cons 9.859155e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.579633e-06	k: 0	n:1430000
Cons ci ratio: 1.012134e+00	ci left: 5.352409e-06	ci right 1.642625e-05	k: 14	n:1430000
KS ci ratio: 1.116332e-01	ci left: 8.134354e-04	ci right 9.102828e-04	k: 1231	n:1430000
SLC2A6   1430000 perm   964 sec   (1484 perm/sec)   p_kst 8.608392e-04   p_cons 9.790210e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.561719e-06	k: 0	n:1440000
Cons ci ratio: 1.012134e+00	ci left: 5.315239e-06	ci right 1.631218e-05	k: 14	n:1440000
KS ci ratio: 1.111828e-01	ci left: 8.145375e-04	ci right 9.110993e-04	k: 1241	n:1440000
SLC2A6   1440000 perm   976 sec   (1476 perm/sec)   p_kst 8.618056e-04   p_cons 9.722222e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.544052e-06	k: 0	n:1450000
Cons ci ratio: 1.012134e+00	ci left: 5.278582e-06	ci right 1.619969e-05	k: 14	n:1450000
KS ci ratio: 1.106936e-01	ci left: 8.162958e-04	ci right 9.126124e-04	k: 1252	n:1450000
SLC2A6   1450000 perm   988 sec   (1468 perm/sec)   p_kst 8.634483e-04   p_cons 9.655172e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.526627e-06	k: 0	n:1460000
Cons ci ratio: 1.012134e+00	ci left: 5.242428e-06	ci right 1.608873e-05	k: 14	n:1460000
KS ci ratio: 1.102108e-01	ci left: 8.180308e-04	ci right 9.141039e-04	k: 1263	n:1460000
SLC2A6   1460000 perm   1000 sec   (1460 perm/sec)   p_kst 8.650685e-04   p_cons 9.589041e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.509439e-06	k: 0	n:1470000
Cons ci ratio: 1.012134e+00	ci left: 5.206765e-06	ci right 1.597928e-05	k: 14	n:1470000
KS ci ratio: 1.097343e-01	ci left: 8.197432e-04	ci right 9.155742e-04	k: 1274	n:1470000
SLC2A6   1470000 perm   1012 sec   (1453 perm/sec)   p_kst 8.666667e-04   p_cons 9.523810e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.492483e-06	k: 0	n:1480000
Cons ci ratio: 1.012134e+00	ci left: 5.171584e-06	ci right 1.587131e-05	k: 14	n:1480000
KS ci ratio: 1.093064e-01	ci left: 8.207761e-04	ci right 9.163296e-04	k: 1284	n:1480000
SLC2A6   1480000 perm   1024 sec   (1445 perm/sec)   p_kst 8.675676e-04   p_cons 9.459459e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.475755e-06	k: 0	n:1490000
Cons ci ratio: 1.012134e+00	ci left: 5.136875e-06	ci right 1.576480e-05	k: 14	n:1490000
KS ci ratio: 1.089256e-01	ci left: 8.211430e-04	ci right 9.163848e-04	k: 1293	n:1490000
SLC2A6   1490000 perm   1036 sec   (1438 perm/sec)   p_kst 8.677852e-04   p_cons 9.395973e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.459250e-06	k: 0	n:1500000
Cons ci ratio: 1.012134e+00	ci left: 5.102629e-06	ci right 1.565970e-05	k: 14	n:1500000
KS ci ratio: 1.085488e-01	ci left: 8.215055e-04	ci right 9.164387e-04	k: 1302	n:1500000
SLC2A6   1500000 perm   1049 sec   (1431 perm/sec)   p_kst 8.680000e-04   p_cons 9.333333e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.442964e-06	k: 0	n:1510000
Cons ci ratio: 1.012134e+00	ci left: 5.068837e-06	ci right 1.555599e-05	k: 14	n:1510000
KS ci ratio: 1.080934e-01	ci left: 8.231525e-04	ci right 9.178516e-04	k: 1313	n:1510000
SLC2A6   1510000 perm   1061 sec   (1423 perm/sec)   p_kst 8.695364e-04   p_cons 9.271523e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.426891e-06	k: 0	n:1520000
Cons ci ratio: 9.799945e-01	ci left: 5.523291e-06	ci right 1.627641e-05	k: 15	n:1520000
KS ci ratio: 1.077251e-01	ci left: 8.234983e-04	ci right 9.178939e-04	k: 1322	n:1520000
SLC2A6   1520000 perm   1073 sec   (1416 perm/sec)   p_kst 8.697368e-04   p_cons 9.868421e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.411029e-06	k: 0	n:1530000
Cons ci ratio: 9.799946e-01	ci left: 5.487191e-06	ci right 1.617003e-05	k: 15	n:1530000
KS ci ratio: 1.072800e-01	ci left: 8.251122e-04	ci right 9.192773e-04	k: 1333	n:1530000
SLC2A6   1530000 perm   1086 sec   (1408 perm/sec)   p_kst 8.712418e-04   p_cons 9.803922e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.395373e-06	k: 0	n:1540000
Cons ci ratio: 9.799946e-01	ci left: 5.451559e-06	ci right 1.606503e-05	k: 15	n:1540000
KS ci ratio: 1.069997e-01	ci left: 8.241780e-04	ci right 9.179752e-04	k: 1340	n:1540000
SLC2A6   1540000 perm   1099 sec   (1401 perm/sec)   p_kst 8.701299e-04   p_cons 9.740260e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.379919e-06	k: 0	n:1550000
Cons ci ratio: 9.799946e-01	ci left: 5.416388e-06	ci right 1.596138e-05	k: 15	n:1550000
KS ci ratio: 1.065240e-01	ci left: 8.263960e-04	ci right 9.200013e-04	k: 1352	n:1550000
SLC2A6   1550000 perm   1111 sec   (1395 perm/sec)   p_kst 8.722581e-04   p_cons 9.677419e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.364664e-06	k: 0	n:1560000
Cons ci ratio: 9.799947e-01	ci left: 5.381667e-06	ci right 1.585907e-05	k: 15	n:1560000
KS ci ratio: 1.060935e-01	ci left: 8.279624e-04	ci right 9.213425e-04	k: 1363	n:1560000
SLC2A6   1560000 perm   1124 sec   (1388 perm/sec)   p_kst 8.737179e-04   p_cons 9.615385e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.349602e-06	k: 0	n:1570000
Cons ci ratio: 9.799947e-01	ci left: 5.347389e-06	ci right 1.575805e-05	k: 15	n:1570000
KS ci ratio: 1.057838e-01	ci left: 8.276493e-04	ci right 9.207046e-04	k: 1371	n:1570000
SLC2A6   1570000 perm   1137 sec   (1381 perm/sec)   p_kst 8.732484e-04   p_cons 9.554140e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.334731e-06	k: 0	n:1580000
Cons ci ratio: 9.799947e-01	ci left: 5.313545e-06	ci right 1.565832e-05	k: 15	n:1580000
KS ci ratio: 1.054003e-01	ci left: 8.285730e-04	ci right 9.213735e-04	k: 1381	n:1580000
SLC2A6   1580000 perm   1150 sec   (1374 perm/sec)   p_kst 8.740506e-04   p_cons 9.493671e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.320047e-06	k: 0	n:1590000
Cons ci ratio: 9.799948e-01	ci left: 5.280126e-06	ci right 1.555984e-05	k: 15	n:1590000
KS ci ratio: 1.051723e-01	ci left: 8.270360e-04	ci right 9.194517e-04	k: 1387	n:1590000
SLC2A6   1590000 perm   1162 sec   (1368 perm/sec)   p_kst 8.723270e-04   p_cons 9.433962e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.305547e-06	k: 0	n:1600000
Cons ci ratio: 9.799948e-01	ci left: 5.247126e-06	ci right 1.546259e-05	k: 15	n:1600000
KS ci ratio: 1.049082e-01	ci left: 8.261271e-04	ci right 9.181950e-04	k: 1394	n:1600000
SLC2A6   1600000 perm   1176 sec   (1361 perm/sec)   p_kst 8.712500e-04   p_cons 9.375000e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.291227e-06	k: 0	n:1610000
Cons ci ratio: 9.799948e-01	ci left: 5.214535e-06	ci right 1.536655e-05	k: 15	n:1610000
KS ci ratio: 1.047208e-01	ci left: 8.240200e-04	ci right 9.156790e-04	k: 1399	n:1610000
SLC2A6   1610000 perm   1189 sec   (1355 perm/sec)   p_kst 8.689441e-04   p_cons 9.316770e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.277083e-06	k: 0	n:1620000
Cons ci ratio: 9.799949e-01	ci left: 5.182346e-06	ci right 1.527169e-05	k: 15	n:1620000
KS ci ratio: 1.042378e-01	ci left: 8.267485e-04	ci right 9.182609e-04	k: 1412	n:1620000
SLC2A6   1620000 perm   1202 sec   (1348 perm/sec)   p_kst 8.716049e-04   p_cons 9.259259e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.263114e-06	k: 0	n:1630000
Cons ci ratio: 9.799949e-01	ci left: 5.150552e-06	ci right 1.517800e-05	k: 15	n:1630000
KS ci ratio: 1.039074e-01	ci left: 8.270542e-04	ci right 9.182925e-04	k: 1421	n:1630000
SLC2A6   1630000 perm   1215 sec   (1341 perm/sec)   p_kst 8.717791e-04   p_cons 9.202454e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.249314e-06	k: 0	n:1640000
Cons ci ratio: 9.799949e-01	ci left: 5.119147e-06	ci right 1.508545e-05	k: 15	n:1640000
KS ci ratio: 1.036164e-01	ci left: 8.267626e-04	ci right 9.176978e-04	k: 1429	n:1640000
SLC2A6   1640000 perm   1229 sec   (1335 perm/sec)   p_kst 8.713415e-04   p_cons 9.146341e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.235682e-06	k: 0	n:1650000
Cons ci ratio: 9.799950e-01	ci left: 5.088121e-06	ci right 1.499403e-05	k: 15	n:1650000
KS ci ratio: 1.032201e-01	ci left: 8.282462e-04	ci right 9.189750e-04	k: 1440	n:1650000
SLC2A6   1650000 perm   1242 sec   (1328 perm/sec)   p_kst 8.727273e-04   p_cons 9.090909e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.222214e-06	k: 0	n:1660000
Cons ci ratio: 9.239476e-01	ci left: 5.965750e-06	ci right 1.639672e-05	k: 17	n:1660000
KS ci ratio: 1.028992e-01	ci left: 8.285387e-04	ci right 9.190004e-04	k: 1449	n:1660000
SLC2A6   1660000 perm   1255 sec   (1323 perm/sec)   p_kst 8.728916e-04   p_cons 1.024096e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.208907e-06	k: 0	n:1670000
Cons ci ratio: 9.239476e-01	ci left: 5.930027e-06	ci right 1.629854e-05	k: 17	n:1670000
KS ci ratio: 1.026166e-01	ci left: 8.282447e-04	ci right 9.184109e-04	k: 1457	n:1670000
SLC2A6   1670000 perm   1269 sec   (1316 perm/sec)   p_kst 8.724551e-04   p_cons 1.017964e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.195759e-06	k: 0	n:1680000
Cons ci ratio: 9.239476e-01	ci left: 5.894729e-06	ci right 1.620153e-05	k: 17	n:1680000
KS ci ratio: 1.023712e-01	ci left: 8.273745e-04	ci right 9.172176e-04	k: 1464	n:1680000
SLC2A6   1680000 perm   1282 sec   (1310 perm/sec)   p_kst 8.714286e-04   p_cons 1.011905e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.182767e-06	k: 0	n:1690000
Cons ci ratio: 9.239477e-01	ci left: 5.859849e-06	ci right 1.610566e-05	k: 17	n:1690000
KS ci ratio: 1.019889e-01	ci left: 8.288214e-04	ci right 9.184654e-04	k: 1475	n:1690000
SLC2A6   1690000 perm   1296 sec   (1304 perm/sec)   p_kst 8.727811e-04   p_cons 1.005917e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.169927e-06	k: 0	n:1700000
Cons ci ratio: 8.993044e-01	ci left: 6.275271e-06	ci right 1.673393e-05	k: 18	n:1700000
KS ci ratio: 1.016794e-01	ci left: 8.291052e-04	ci right 9.184916e-04	k: 1484	n:1700000
SLC2A6   1700000 perm   1309 sec   (1298 perm/sec)   p_kst 8.729412e-04   p_cons 1.058824e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.157237e-06	k: 0	n:1710000
Cons ci ratio: 8.993044e-01	ci left: 6.238573e-06	ci right 1.663607e-05	k: 18	n:1710000
KS ci ratio: 1.015429e-01	ci left: 8.265364e-04	ci right 9.155189e-04	k: 1488	n:1710000
SLC2A6   1710000 perm   1323 sec   (1293 perm/sec)   p_kst 8.701754e-04   p_cons 1.052632e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.144695e-06	k: 0	n:1720000
Cons ci ratio: 8.993044e-01	ci left: 6.202303e-06	ci right 1.653935e-05	k: 18	n:1720000
KS ci ratio: 1.012712e-01	ci left: 8.262641e-04	ci right 9.149652e-04	k: 1496	n:1720000
SLC2A6   1720000 perm   1337 sec   (1287 perm/sec)   p_kst 8.697674e-04   p_cons 1.046512e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.132298e-06	k: 0	n:1730000
Cons ci ratio: 8.993045e-01	ci left: 6.166451e-06	ci right 1.644374e-05	k: 18	n:1730000
KS ci ratio: 1.011700e-01	ci left: 8.231782e-04	ci right 9.114545e-04	k: 1499	n:1730000
SLC2A6   1730000 perm   1350 sec   (1281 perm/sec)   p_kst 8.664740e-04   p_cons 1.040462e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.120043e-06	k: 0	n:1740000
Cons ci ratio: 8.993045e-01	ci left: 6.131012e-06	ci right 1.634924e-05	k: 18	n:1740000
KS ci ratio: 1.009349e-01	ci left: 8.223685e-04	ci right 9.103409e-04	k: 1506	n:1740000
SLC2A6   1740000 perm   1364 sec   (1275 perm/sec)   p_kst 8.655172e-04   p_cons 1.034483e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.107929e-06	k: 0	n:1750000
Cons ci ratio: 8.993045e-01	ci left: 6.095977e-06	ci right 1.625581e-05	k: 18	n:1750000
KS ci ratio: 1.006016e-01	ci left: 8.232396e-04	ci right 9.109972e-04	k: 1516	n:1750000
SLC2A6   1750000 perm   1378 sec   (1269 perm/sec)   p_kst 8.662857e-04   p_cons 1.028571e-05   p_joint 0

Joint ci ratio: 2.771856e+00	ci left: 1.438512e-08	ci right 3.165702e-06	k: 1	n:1760000
Cons ci ratio: 8.765334e-01	ci left: 6.499581e-06	ci right 1.685839e-05	k: 19	n:1760000
KS ci ratio: 1.003374e-01	ci left: 8.229933e-04	ci right 9.104807e-04	k: 1524	n:1760000
SLC2A6   1760000 perm   1393 sec   (1264 perm/sec)   p_kst 8.659091e-04   p_cons 1.079545e-05   p_joint 5.681818e-07

Joint ci ratio: 2.771856e+00	ci left: 1.430385e-08	ci right 3.147817e-06	k: 1	n:1770000
Cons ci ratio: 8.765334e-01	ci left: 6.462860e-06	ci right 1.676314e-05	k: 19	n:1770000
KS ci ratio: 1.001407e-01	ci left: 8.216485e-04	ci right 9.088115e-04	k: 1530	n:1770000
SLC2A6   1770000 perm   1407 sec   (1258 perm/sec)   p_kst 8.644068e-04   p_cons 1.073446e-05   p_joint 5.649718e-07

Joint ci ratio: 2.771856e+00	ci left: 1.422349e-08	ci right 3.130133e-06	k: 1	n:1780000
Cons ci ratio: 8.765335e-01	ci left: 6.426552e-06	ci right 1.666897e-05	k: 19	n:1780000
KS ci ratio: 9.984760e-02	ci left: 8.219622e-04	ci right 9.088884e-04	k: 1539	n:1780000
SLC2A6   1780000 perm   1422 sec   (1252 perm/sec)   p_kst 8.646067e-04   p_cons 1.067416e-05   p_joint 5.617978e-07

Joint ci ratio: 2.771856e+00	ci left: 1.414403e-08	ci right 3.112646e-06	k: 1	n:1790000
Cons ci ratio: 8.765335e-01	ci left: 6.390649e-06	ci right 1.657585e-05	k: 19	n:1790000
KS ci ratio: 9.955710e-02	ci left: 8.222728e-04	ci right 9.089641e-04	k: 1548	n:1790000
SLC2A6   1790000 perm   1436 sec   (1246 perm/sec)   p_kst 8.648045e-04   p_cons 1.061453e-05   p_joint 5.586592e-07

Joint ci ratio: 2.771856e+00	ci left: 1.406545e-08	ci right 3.095354e-06	k: 1	n:1800000
Cons ci ratio: 8.765335e-01	ci left: 6.355146e-06	ci right 1.648376e-05	k: 19	n:1800000
KS ci ratio: 9.926912e-02	ci left: 8.225803e-04	ci right 9.090386e-04	k: 1557	n:1800000
SLC2A6   1800000 perm   1450 sec   (1241 perm/sec)   p_kst 8.650000e-04   p_cons 1.055556e-05   p_joint 5.555556e-07

Joint ci ratio: 2.771856e+00	ci left: 1.398774e-08	ci right 3.078252e-06	k: 1	n:1810000
Cons ci ratio: 8.765336e-01	ci left: 6.320034e-06	ci right 1.639269e-05	k: 19	n:1810000
KS ci ratio: 9.898363e-02	ci left: 8.228848e-04	ci right 9.091119e-04	k: 1566	n:1810000
SLC2A6   1810000 perm   1465 sec   (1236 perm/sec)   p_kst 8.651934e-04   p_cons 1.049724e-05   p_joint 5.524862e-07

Joint ci ratio: 2.771856e+00	ci left: 1.391088e-08	ci right 3.061339e-06	k: 1	n:1820000
Cons ci ratio: 8.765336e-01	ci left: 6.285309e-06	ci right 1.630262e-05	k: 19	n:1820000
KS ci ratio: 9.879474e-02	ci left: 8.215786e-04	ci right 9.074950e-04	k: 1572	n:1820000
SLC2A6   1820000 perm   1480 sec   (1230 perm/sec)   p_kst 8.637363e-04   p_cons 1.043956e-05   p_joint 5.494505e-07

Joint ci ratio: 2.771856e+00	ci left: 1.383487e-08	ci right 3.044610e-06	k: 1	n:1830000
Cons ci ratio: 8.765336e-01	ci left: 6.250963e-06	ci right 1.621353e-05	k: 19	n:1830000
KS ci ratio: 9.848216e-02	ci left: 8.224188e-04	ci right 9.081352e-04	k: 1582	n:1830000
SLC2A6   1830000 perm   1494 sec   (1225 perm/sec)   p_kst 8.644809e-04   p_cons 1.038251e-05   p_joint 5.464481e-07

Joint ci ratio: 2.771856e+00	ci left: 1.375968e-08	ci right 3.028063e-06	k: 1	n:1840000
Cons ci ratio: 8.554090e-01	ci left: 6.639425e-06	ci right 1.678711e-05	k: 20	n:1840000
KS ci ratio: 9.811091e-02	ci left: 8.243106e-04	ci right 9.098817e-04	k: 1594	n:1840000
SLC2A6   1840000 perm   1509 sec   (1219 perm/sec)   p_kst 8.663043e-04   p_cons 1.086957e-05   p_joint 5.434783e-07

Joint ci ratio: 2.771856e+00	ci left: 1.368530e-08	ci right 3.011695e-06	k: 1	n:1850000
Cons ci ratio: 8.357416e-01	ci left: 7.026679e-06	ci right 1.735169e-05	k: 21	n:1850000
KS ci ratio: 9.765263e-02	ci left: 8.277645e-04	ci right 9.132698e-04	k: 1609	n:1850000
SLC2A6   1850000 perm   1524 sec   (1214 perm/sec)   p_kst 8.697297e-04   p_cons 1.135135e-05   p_joint 5.405405e-07

Joint ci ratio: 2.771856e+00	ci left: 1.361172e-08	ci right 2.995504e-06	k: 1	n:1860000
Cons ci ratio: 8.357416e-01	ci left: 6.988901e-06	ci right 1.725841e-05	k: 21	n:1860000
KS ci ratio: 9.747125e-02	ci left: 8.264613e-04	ci right 9.116643e-04	k: 1615	n:1860000
SLC2A6   1860000 perm   1539 sec   (1209 perm/sec)   p_kst 8.682796e-04   p_cons 1.129032e-05   p_joint 5.376344e-07

Joint ci ratio: 2.771856e+00	ci left: 1.353893e-08	ci right 2.979485e-06	k: 1	n:1870000
Cons ci ratio: 8.357417e-01	ci left: 6.951527e-06	ci right 1.716612e-05	k: 21	n:1870000
KS ci ratio: 9.696235e-02	ci left: 8.309117e-04	ci right 9.161009e-04	k: 1632	n:1870000
SLC2A6   1870000 perm   1554 sec   (1204 perm/sec)   p_kst 8.727273e-04   p_cons 1.122995e-05   p_joint 5.347594e-07

Joint ci ratio: 2.771856e+00	ci left: 1.346692e-08	ci right 2.963636e-06	k: 1	n:1880000
Cons ci ratio: 8.357417e-01	ci left: 6.914551e-06	ci right 1.707481e-05	k: 21	n:1880000
KS ci ratio: 9.651991e-02	ci left: 8.342777e-04	ci right 9.193996e-04	k: 1647	n:1880000
SLC2A6   1880000 perm   1569 sec   (1198 perm/sec)   p_kst 8.760638e-04   p_cons 1.117021e-05   p_joint 5.319149e-07

Joint ci ratio: 2.771856e+00	ci left: 1.339567e-08	ci right 2.947956e-06	k: 1	n:1890000
Cons ci ratio: 8.357417e-01	ci left: 6.877966e-06	ci right 1.698446e-05	k: 21	n:1890000
KS ci ratio: 9.637392e-02	ci left: 8.324452e-04	ci right 9.172444e-04	k: 1652	n:1890000
SLC2A6   1890000 perm   1584 sec   (1193 perm/sec)   p_kst 8.740741e-04   p_cons 1.111111e-05   p_joint 5.291005e-07

Joint ci ratio: 2.771856e+00	ci left: 1.332516e-08	ci right 2.932440e-06	k: 1	n:1900000
Cons ci ratio: 8.357417e-01	ci left: 6.841766e-06	ci right 1.689507e-05	k: 21	n:1900000
KS ci ratio: 9.622859e-02	ci left: 8.306320e-04	ci right 9.151118e-04	k: 1657	n:1900000
SLC2A6   1900000 perm   1600 sec   (1188 perm/sec)   p_kst 8.721053e-04   p_cons 1.105263e-05   p_joint 5.263158e-07

Joint ci ratio: 2.771856e+00	ci left: 1.325540e-08	ci right 2.917087e-06	k: 1	n:1910000
Cons ci ratio: 8.357418e-01	ci left: 6.805945e-06	ci right 1.680662e-05	k: 21	n:1910000
KS ci ratio: 9.605501e-02	ci left: 8.293490e-04	ci right 9.135375e-04	k: 1663	n:1910000
SLC2A6   1910000 perm   1615 sec   (1183 perm/sec)   p_kst 8.706806e-04   p_cons 1.099476e-05   p_joint 5.235602e-07

Joint ci ratio: 2.771856e+00	ci left: 1.318636e-08	ci right 2.901894e-06	k: 1	n:1920000
Cons ci ratio: 8.357418e-01	ci left: 6.770497e-06	ci right 1.671908e-05	k: 21	n:1920000
KS ci ratio: 9.565333e-02	ci left: 8.321464e-04	ci right 9.162458e-04	k: 1677	n:1920000
SLC2A6   1920000 perm   1630 sec   (1178 perm/sec)   p_kst 8.734375e-04   p_cons 1.093750e-05   p_joint 5.208333e-07

Joint ci ratio: 2.771856e+00	ci left: 1.311804e-08	ci right 2.886858e-06	k: 1	n:1930000
Cons ci ratio: 8.357418e-01	ci left: 6.735417e-06	ci right 1.663246e-05	k: 21	n:1930000
KS ci ratio: 9.548285e-02	ci left: 8.308692e-04	ci right 9.146816e-04	k: 1683	n:1930000
SLC2A6   1930000 perm   1645 sec   (1173 perm/sec)   p_kst 8.720207e-04   p_cons 1.088083e-05   p_joint 5.181347e-07

Joint ci ratio: 2.771856e+00	ci left: 1.305042e-08	ci right 2.871978e-06	k: 1	n:1940000
Cons ci ratio: 8.357419e-01	ci left: 6.700698e-06	ci right 1.654672e-05	k: 21	n:1940000
KS ci ratio: 9.511631e-02	ci left: 8.331278e-04	ci right 9.168274e-04	k: 1696	n:1940000
SLC2A6   1940000 perm   1661 sec   (1168 perm/sec)   p_kst 8.742268e-04   p_cons 1.082474e-05   p_joint 5.154639e-07

Joint ci ratio: 2.771856e+00	ci left: 1.298349e-08	ci right 2.857250e-06	k: 1	n:1950000
Cons ci ratio: 8.001615e-01	ci left: 7.476951e-06	ci right 1.769805e-05	k: 23	n:1950000
KS ci ratio: 9.486508e-02	ci left: 8.333611e-04	ci right 9.168507e-04	k: 1705	n:1950000
SLC2A6   1950000 perm   1677 sec   (1163 perm/sec)   p_kst 8.743590e-04   p_cons 1.179487e-05   p_joint 5.128205e-07

Joint ci ratio: 2.771856e+00	ci left: 1.291725e-08	ci right 2.842672e-06	k: 1	n:1960000
Cons ci ratio: 8.001615e-01	ci left: 7.438803e-06	ci right 1.760775e-05	k: 23	n:1960000
KS ci ratio: 9.458823e-02	ci left: 8.340904e-04	ci right 9.173957e-04	k: 1715	n:1960000
SLC2A6   1960000 perm   1692 sec   (1158 perm/sec)   p_kst 8.750000e-04   p_cons 1.173469e-05   p_joint 5.102041e-07

Joint ci ratio: 2.771856e+00	ci left: 1.285168e-08	ci right 2.828242e-06	k: 1	n:1970000
Cons ci ratio: 8.001616e-01	ci left: 7.401043e-06	ci right 1.751837e-05	k: 23	n:1970000
KS ci ratio: 9.442337e-02	ci left: 8.328301e-04	ci right 9.158566e-04	k: 1721	n:1970000
SLC2A6   1970000 perm   1708 sec   (1153 perm/sec)   p_kst 8.736041e-04   p_cons 1.167513e-05   p_joint 5.076142e-07

Joint ci ratio: 2.771856e+00	ci left: 1.278677e-08	ci right 2.813958e-06	k: 1	n:1980000
Cons ci ratio: 8.001616e-01	ci left: 7.363664e-06	ci right 1.742990e-05	k: 23	n:1980000
KS ci ratio: 9.425936e-02	ci left: 8.315827e-04	ci right 9.143328e-04	k: 1727	n:1980000
SLC2A6   1980000 perm   1724 sec   (1148 perm/sec)   p_kst 8.722222e-04   p_cons 1.161616e-05   p_joint 5.050505e-07

Joint ci ratio: 2.771856e+00	ci left: 1.272252e-08	ci right 2.799818e-06	k: 1	n:1990000
Cons ci ratio: 8.001616e-01	ci left: 7.326660e-06	ci right 1.734231e-05	k: 23	n:1990000
KS ci ratio: 9.404194e-02	ci left: 8.313293e-04	ci right 9.138529e-04	k: 1735	n:1990000
SLC2A6   1990000 perm   1740 sec   (1144 perm/sec)   p_kst 8.718593e-04   p_cons 1.155779e-05   p_joint 5.025126e-07

Joint ci ratio: 2.771857e+00	ci left: 1.265890e-08	ci right 2.785819e-06	k: 1	n:2000000
Cons ci ratio: 8.001616e-01	ci left: 7.290027e-06	ci right 1.725560e-05	k: 23	n:2000000
KS ci ratio: 9.382602e-02	ci left: 8.310787e-04	ci right 9.133776e-04	k: 1743	n:2000000
SLC2A6   2000000 perm   1756 sec   (1139 perm/sec)   p_kst 8.715000e-04   p_cons 1.150000e-05   p_joint 5.000000e-07

Joint ci ratio: 2.771857e+00	ci left: 1.259592e-08	ci right 2.771959e-06	k: 1	n:2010000
Cons ci ratio: 8.001617e-01	ci left: 7.253758e-06	ci right 1.716975e-05	k: 23	n:2010000
KS ci ratio: 9.371871e-02	ci left: 8.288873e-04	ci right 9.108702e-04	k: 1747	n:2010000
SLC2A6   2010000 perm   1772 sec   (1134 perm/sec)   p_kst 8.691542e-04   p_cons 1.144279e-05   p_joint 4.975124e-07

Joint ci ratio: 2.771857e+00	ci left: 1.253357e-08	ci right 2.758236e-06	k: 1	n:2020000
Cons ci ratio: 8.001617e-01	ci left: 7.217848e-06	ci right 1.708475e-05	k: 23	n:2020000
KS ci ratio: 9.355834e-02	ci left: 8.276846e-04	ci right 9.094008e-04	k: 1753	n:2020000
SLC2A6   2020000 perm   1788 sec   (1130 perm/sec)   p_kst 8.678218e-04   p_cons 1.138614e-05   p_joint 4.950495e-07

Joint ci ratio: 2.771857e+00	ci left: 1.247183e-08	ci right 2.744649e-06	k: 1	n:2030000
Cons ci ratio: 8.001617e-01	ci left: 7.182292e-06	ci right 1.700059e-05	k: 23	n:2030000
KS ci ratio: 9.342536e-02	ci left: 8.260128e-04	ci right 9.074417e-04	k: 1758	n:2030000
SLC2A6   2030000 perm   1804 sec   (1125 perm/sec)   p_kst 8.660099e-04   p_cons 1.133005e-05   p_joint 4.926108e-07

Joint ci ratio: 2.263211e+00	ci left: 1.187301e-07	ci right 3.541509e-06	k: 2	n:2040000
Cons ci ratio: 7.839950e-01	ci left: 7.537883e-06	ci right 1.750490e-05	k: 24	n:2040000
KS ci ratio: 9.326649e-02	ci left: 8.248362e-04	ci right 9.060033e-04	k: 1764	n:2040000
SLC2A6   2040000 perm   1821 sec   (1120 perm/sec)   p_kst 8.647059e-04   p_cons 1.176471e-05   p_joint 9.803922e-07

Joint ci ratio: 2.263211e+00	ci left: 1.181509e-07	ci right 3.524233e-06	k: 2	n:2050000
Cons ci ratio: 7.839950e-01	ci left: 7.501113e-06	ci right 1.741951e-05	k: 24	n:2050000
KS ci ratio: 9.316109e-02	ci left: 8.227183e-04	ci right 9.035805e-04	k: 1768	n:2050000
SLC2A6   2050000 perm   1837 sec   (1116 perm/sec)   p_kst 8.624390e-04   p_cons 1.170732e-05   p_joint 9.756098e-07

Joint ci ratio: 2.263211e+00	ci left: 1.175773e-07	ci right 3.507125e-06	k: 2	n:2060000
Cons ci ratio: 7.839951e-01	ci left: 7.464700e-06	ci right 1.733495e-05	k: 24	n:2060000
KS ci ratio: 9.300357e-02	ci left: 8.215693e-04	ci right 9.021746e-04	k: 1774	n:2060000
SLC2A6   2060000 perm   1854 sec   (1111 perm/sec)   p_kst 8.611650e-04   p_cons 1.165049e-05   p_joint 9.708738e-07

Joint ci ratio: 2.263211e+00	ci left: 1.170093e-07	ci right 3.490183e-06	k: 2	n:2070000
Cons ci ratio: 7.839951e-01	ci left: 7.428638e-06	ci right 1.725121e-05	k: 24	n:2070000
KS ci ratio: 9.289905e-02	ci left: 8.194878e-04	ci right 8.997936e-04	k: 1778	n:2070000
SLC2A6   2070000 perm   1870 sec   (1107 perm/sec)   p_kst 8.589372e-04   p_cons 1.159420e-05   p_joint 9.661836e-07

Joint ci ratio: 2.263211e+00	ci left: 1.164468e-07	ci right 3.473403e-06	k: 2	n:2080000
Cons ci ratio: 7.839951e-01	ci left: 7.392924e-06	ci right 1.716827e-05	k: 24	n:2080000
KS ci ratio: 9.274285e-02	ci left: 8.183656e-04	ci right 8.984192e-04	k: 1784	n:2080000
SLC2A6   2080000 perm   1887 sec   (1102 perm/sec)   p_kst 8.576923e-04   p_cons 1.153846e-05   p_joint 9.615385e-07

Joint ci ratio: 2.263211e+00	ci left: 1.158896e-07	ci right 3.456784e-06	k: 2	n:2090000
Cons ci ratio: 7.839951e-01	ci left: 7.357551e-06	ci right 1.708612e-05	k: 24	n:2090000
KS ci ratio: 9.245835e-02	ci left: 8.195913e-04	ci right 8.995056e-04	k: 1795	n:2090000
SLC2A6   2090000 perm   1904 sec   (1098 perm/sec)   p_kst 8.588517e-04   p_cons 1.148325e-05   p_joint 9.569378e-07

Joint ci ratio: 2.263211e+00	ci left: 1.153378e-07	ci right 3.440323e-06	k: 2	n:2100000
Cons ci ratio: 7.839951e-01	ci left: 7.322515e-06	ci right 1.700476e-05	k: 24	n:2100000
KS ci ratio: 9.212543e-02	ci left: 8.217361e-04	ci right 9.015555e-04	k: 1808	n:2100000
SLC2A6   2100000 perm   1920 sec   (1094 perm/sec)   p_kst 8.609524e-04   p_cons 1.142857e-05   p_joint 9.523810e-07

Joint ci ratio: 2.263211e+00	ci left: 1.147911e-07	ci right 3.424018e-06	k: 2	n:2110000
Cons ci ratio: 7.839952e-01	ci left: 7.287811e-06	ci right 1.692417e-05	k: 24	n:2110000
KS ci ratio: 9.179609e-02	ci left: 8.238611e-04	ci right 9.035854e-04	k: 1821	n:2110000
SLC2A6   2110000 perm   1937 sec   (1089 perm/sec)   p_kst 8.630332e-04   p_cons 1.137441e-05   p_joint 9.478673e-07

Joint ci ratio: 2.263211e+00	ci left: 1.142497e-07	ci right 3.407867e-06	k: 2	n:2120000
Cons ci ratio: 7.839952e-01	ci left: 7.253434e-06	ci right 1.684434e-05	k: 24	n:2120000
KS ci ratio: 9.137064e-02	ci left: 8.278102e-04	ci right 9.075256e-04	k: 1838	n:2120000
SLC2A6   2120000 perm   1954 sec   (1085 perm/sec)   p_kst 8.669811e-04   p_cons 1.132075e-05   p_joint 9.433962e-07

Joint ci ratio: 2.263211e+00	ci left: 1.137133e-07	ci right 3.391868e-06	k: 2	n:2130000
Cons ci ratio: 7.839952e-01	ci left: 7.219380e-06	ci right 1.676526e-05	k: 24	n:2130000
KS ci ratio: 9.109854e-02	ci left: 8.289703e-04	ci right 9.085470e-04	k: 1849	n:2130000
SLC2A6   2130000 perm   1971 sec   (1081 perm/sec)   p_kst 8.680751e-04   p_cons 1.126761e-05   p_joint 9.389671e-07

Joint ci ratio: 2.263211e+00	ci left: 1.131819e-07	ci right 3.376018e-06	k: 2	n:2140000
Cons ci ratio: 7.839952e-01	ci left: 7.185645e-06	ci right 1.668692e-05	k: 24	n:2140000
KS ci ratio: 9.100031e-02	ci left: 8.269232e-04	ci right 9.062132e-04	k: 1853	n:2140000
SLC2A6   2140000 perm   1988 sec   (1076 perm/sec)   p_kst 8.658879e-04   p_cons 1.121495e-05   p_joint 9.345794e-07

Joint ci ratio: 2.263211e+00	ci left: 1.126555e-07	ci right 3.360316e-06	k: 2	n:2150000
Cons ci ratio: 7.839953e-01	ci left: 7.152223e-06	ci right 1.660930e-05	k: 24	n:2150000
KS ci ratio: 9.090241e-02	ci left: 8.248951e-04	ci right 9.039011e-04	k: 1857	n:2150000
SLC2A6   2150000 perm   2006 sec   (1072 perm/sec)   p_kst 8.637209e-04   p_cons 1.116279e-05   p_joint 9.302326e-07

Joint ci ratio: 2.263211e+00	ci left: 1.121339e-07	ci right 3.344759e-06	k: 2	n:2160000
Cons ci ratio: 7.839953e-01	ci left: 7.119111e-06	ci right 1.653241e-05	k: 24	n:2160000
KS ci ratio: 9.068303e-02	ci left: 8.251483e-04	ci right 9.039776e-04	k: 1866	n:2160000
SLC2A6   2160000 perm   2023 sec   (1068 perm/sec)   p_kst 8.638889e-04   p_cons 1.111111e-05   p_joint 9.259259e-07

Joint ci ratio: 2.263211e+00	ci left: 1.116172e-07	ci right 3.329345e-06	k: 2	n:2170000
Cons ci ratio: 7.839953e-01	ci left: 7.086304e-06	ci right 1.645622e-05	k: 24	n:2170000
KS ci ratio: 9.058614e-02	ci left: 8.231472e-04	ci right 9.016970e-04	k: 1870	n:2170000
SLC2A6   2170000 perm   2040 sec   (1064 perm/sec)   p_kst 8.617512e-04   p_cons 1.105991e-05   p_joint 9.216590e-07

Joint ci ratio: 2.263211e+00	ci left: 1.111052e-07	ci right 3.314073e-06	k: 2	n:2180000
Cons ci ratio: 7.839953e-01	ci left: 7.053798e-06	ci right 1.638073e-05	k: 24	n:2180000
KS ci ratio: 9.029697e-02	ci left: 8.247514e-04	ci right 9.031897e-04	k: 1882	n:2180000
SLC2A6   2180000 perm   2057 sec   (1060 perm/sec)   p_kst 8.633028e-04   p_cons 1.100917e-05   p_joint 9.174312e-07

Joint ci ratio: 2.263211e+00	ci left: 1.105979e-07	ci right 3.298940e-06	k: 2	n:2190000
Cons ci ratio: 7.839953e-01	ci left: 7.021589e-06	ci right 1.630594e-05	k: 24	n:2190000
KS ci ratio: 9.010577e-02	ci left: 8.245560e-04	ci right 9.028009e-04	k: 1890	n:2190000
SLC2A6   2190000 perm   2074 sec   (1056 perm/sec)   p_kst 8.630137e-04   p_cons 1.095890e-05   p_joint 9.132420e-07

Joint ci ratio: 2.263211e+00	ci left: 1.100951e-07	ci right 3.283945e-06	k: 2	n:2200000
Cons ci ratio: 7.839954e-01	ci left: 6.989672e-06	ci right 1.623182e-05	k: 24	n:2200000
KS ci ratio: 8.998696e-02	ci left: 8.230296e-04	ci right 9.010212e-04	k: 1895	n:2200000
SLC2A6   2200000 perm   2091 sec   (1052 perm/sec)   p_kst 8.613636e-04   p_cons 1.090909e-05   p_joint 9.090909e-07

Joint ci ratio: 2.263211e+00	ci left: 1.095970e-07	ci right 3.269086e-06	k: 2	n:2210000
Cons ci ratio: 7.839954e-01	ci left: 6.958045e-06	ci right 1.615837e-05	k: 24	n:2210000
KS ci ratio: 8.970347e-02	ci left: 8.246133e-04	ci right 9.024960e-04	k: 1907	n:2210000
SLC2A6   2210000 perm   2109 sec   (1048 perm/sec)   p_kst 8.628959e-04   p_cons 1.085973e-05   p_joint 9.049774e-07

Joint ci ratio: 2.263211e+00	ci left: 1.091033e-07	ci right 3.254360e-06	k: 2	n:2220000
Cons ci ratio: 7.687706e-01	ci left: 7.287707e-06	ci right 1.662380e-05	k: 25	n:2220000
KS ci ratio: 8.958624e-02	ci left: 8.231006e-04	ci right 9.007335e-04	k: 1912	n:2220000
SLC2A6   2220000 perm   2127 sec   (1044 perm/sec)   p_kst 8.612613e-04   p_cons 1.126126e-05   p_joint 9.009009e-07

Joint ci ratio: 2.263211e+00	ci left: 1.086140e-07	ci right 3.239766e-06	k: 2	n:2230000
Cons ci ratio: 7.687706e-01	ci left: 7.255027e-06	ci right 1.654925e-05	k: 25	n:2230000
KS ci ratio: 8.928329e-02	ci left: 8.251088e-04	ci right 9.026542e-04	k: 1925	n:2230000
SLC2A6   2230000 perm   2144 sec   (1040 perm/sec)   p_kst 8.632287e-04   p_cons 1.121076e-05   p_joint 8.968610e-07

Joint ci ratio: 2.263211e+00	ci left: 1.081292e-07	ci right 3.225303e-06	k: 2	n:2240000
Cons ci ratio: 7.687706e-01	ci left: 7.222638e-06	ci right 1.647537e-05	k: 25	n:2240000
KS ci ratio: 8.907541e-02	ci left: 8.253535e-04	ci right 9.027319e-04	k: 1934	n:2240000
SLC2A6   2240000 perm   2162 sec   (1036 perm/sec)   p_kst 8.633929e-04   p_cons 1.116071e-05   p_joint 8.928571e-07

Joint ci ratio: 2.263211e+00	ci left: 1.076486e-07	ci right 3.210969e-06	k: 2	n:2250000
Cons ci ratio: 7.687706e-01	ci left: 7.190538e-06	ci right 1.640215e-05	k: 25	n:2250000
KS ci ratio: 8.889186e-02	ci left: 8.251617e-04	ci right 9.023545e-04	k: 1942	n:2250000
SLC2A6   2250000 perm   2180 sec   (1032 perm/sec)   p_kst 8.631111e-04   p_cons 1.111111e-05   p_joint 8.888889e-07

Joint ci ratio: 2.263211e+00	ci left: 1.071723e-07	ci right 3.196761e-06	k: 2	n:2260000
Cons ci ratio: 7.687707e-01	ci left: 7.158721e-06	ci right 1.632957e-05	k: 25	n:2260000
KS ci ratio: 8.873219e-02	ci left: 8.245391e-04	ci right 9.015279e-04	k: 1949	n:2260000
SLC2A6   2260000 perm   2198 sec   (1028 perm/sec)   p_kst 8.623894e-04   p_cons 1.106195e-05   p_joint 8.849558e-07

Joint ci ratio: 2.263211e+00	ci left: 1.067001e-07	ci right 3.182678e-06	k: 2	n:2270000
Cons ci ratio: 7.687707e-01	ci left: 7.127185e-06	ci right 1.625764e-05	k: 25	n:2270000
KS ci ratio: 8.861872e-02	ci left: 8.230606e-04	ci right 8.998079e-04	k: 1954	n:2270000
SLC2A6   2270000 perm   2217 sec   (1024 perm/sec)   p_kst 8.607930e-04   p_cons 1.101322e-05   p_joint 8.810573e-07

Joint ci ratio: 2.263211e+00	ci left: 1.062322e-07	ci right 3.168719e-06	k: 2	n:2280000
Cons ci ratio: 7.687707e-01	ci left: 7.095925e-06	ci right 1.618633e-05	k: 25	n:2280000
KS ci ratio: 8.846053e-02	ci left: 8.224528e-04	ci right 8.989995e-04	k: 1961	n:2280000
SLC2A6   2280000 perm   2235 sec   (1020 perm/sec)   p_kst 8.600877e-04   p_cons 1.096491e-05   p_joint 8.771930e-07

Joint ci ratio: 2.263211e+00	ci left: 1.057683e-07	ci right 3.154882e-06	k: 2	n:2290000
Cons ci ratio: 7.687707e-01	ci left: 7.064939e-06	ci right 1.611565e-05	k: 25	n:2290000
KS ci ratio: 8.825833e-02	ci left: 8.227046e-04	ci right 8.990907e-04	k: 1970	n:2290000
SLC2A6   2290000 perm   2253 sec   (1016 perm/sec)   p_kst 8.602620e-04   p_cons 1.091703e-05   p_joint 8.733624e-07

Joint ci ratio: 2.263211e+00	ci left: 1.053084e-07	ci right 3.141165e-06	k: 2	n:2300000
Cons ci ratio: 7.687707e-01	ci left: 7.034221e-06	ci right 1.604558e-05	k: 25	n:2300000
KS ci ratio: 8.807977e-02	ci left: 8.225292e-04	ci right 8.987365e-04	k: 1978	n:2300000
SLC2A6   2300000 perm   2271 sec   (1013 perm/sec)   p_kst 8.600000e-04   p_cons 1.086957e-05   p_joint 8.695652e-07

Joint ci ratio: 2.263211e+00	ci left: 1.048525e-07	ci right 3.127567e-06	k: 2	n:2310000
Cons ci ratio: 7.687708e-01	ci left: 7.003770e-06	ci right 1.597612e-05	k: 25	n:2310000
KS ci ratio: 8.790229e-02	ci left: 8.223555e-04	ci right 8.983853e-04	k: 1986	n:2310000
SLC2A6   2310000 perm   2289 sec   (1009 perm/sec)   p_kst 8.597403e-04   p_cons 1.082251e-05   p_joint 8.658009e-07

Joint ci ratio: 2.263211e+00	ci left: 1.044006e-07	ci right 3.114086e-06	k: 2	n:2320000
Cons ci ratio: 7.687708e-01	ci left: 6.973582e-06	ci right 1.590726e-05	k: 25	n:2320000
KS ci ratio: 8.765993e-02	ci left: 8.234482e-04	ci right 8.993584e-04	k: 1997	n:2320000
SLC2A6   2320000 perm   2308 sec   (1005 perm/sec)   p_kst 8.607759e-04   p_cons 1.077586e-05   p_joint 8.620690e-07

Joint ci ratio: 2.263211e+00	ci left: 1.039525e-07	ci right 3.100721e-06	k: 2	n:2330000
Cons ci ratio: 7.687708e-01	ci left: 6.943652e-06	ci right 1.583899e-05	k: 25	n:2330000
KS ci ratio: 8.752866e-02	ci left: 8.224327e-04	ci right 8.981300e-04	k: 2003	n:2330000
SLC2A6   2330000 perm   2326 sec   (1002 perm/sec)   p_kst 8.596567e-04   p_cons 1.072961e-05   p_joint 8.583691e-07

Joint ci ratio: 2.263211e+00	ci left: 1.035083e-07	ci right 3.087470e-06	k: 2	n:2340000
Cons ci ratio: 7.687708e-01	ci left: 6.913978e-06	ci right 1.577130e-05	k: 25	n:2340000
KS ci ratio: 8.739797e-02	ci left: 8.214261e-04	ci right 8.969120e-04	k: 2009	n:2340000
SLC2A6   2340000 perm   2344 sec   (998 perm/sec)   p_kst 8.585470e-04   p_cons 1.068376e-05   p_joint 8.547009e-07

Joint ci ratio: 2.263211e+00	ci left: 1.030678e-07	ci right 3.074332e-06	k: 2	n:2350000
Cons ci ratio: 7.687708e-01	ci left: 6.884557e-06	ci right 1.570419e-05	k: 25	n:2350000
KS ci ratio: 8.722457e-02	ci left: 8.212606e-04	ci right 8.965739e-04	k: 2017	n:2350000
SLC2A6   2350000 perm   2363 sec   (995 perm/sec)   p_kst 8.582979e-04   p_cons 1.063830e-05   p_joint 8.510638e-07

Joint ci ratio: 2.263211e+00	ci left: 1.026311e-07	ci right 3.061305e-06	k: 2	n:2360000
Cons ci ratio: 7.687709e-01	ci left: 6.855385e-06	ci right 1.563764e-05	k: 25	n:2360000
KS ci ratio: 8.692347e-02	ci left: 8.235837e-04	ci right 8.988362e-04	k: 2031	n:2360000
SLC2A6   2360000 perm   2382 sec   (991 perm/sec)   p_kst 8.605932e-04   p_cons 1.059322e-05   p_joint 8.474576e-07

Joint ci ratio: 2.263211e+00	ci left: 1.021980e-07	ci right 3.048388e-06	k: 2	n:2370000
Cons ci ratio: 7.408058e-01	ci left: 7.507680e-06	ci right 1.657531e-05	k: 27	n:2370000
KS ci ratio: 8.679547e-02	ci left: 8.225853e-04	ci right 8.976303e-04	k: 2037	n:2370000
SLC2A6   2370000 perm   2400 sec   (987 perm/sec)   p_kst 8.594937e-04   p_cons 1.139241e-05   p_joint 8.438819e-07

Joint ci ratio: 2.263211e+00	ci left: 1.017686e-07	ci right 3.035580e-06	k: 2	n:2380000
Cons ci ratio: 7.408059e-01	ci left: 7.476135e-06	ci right 1.650566e-05	k: 27	n:2380000
KS ci ratio: 8.666804e-02	ci left: 8.215954e-04	ci right 8.964344e-04	k: 2043	n:2380000
SLC2A6   2380000 perm   2419 sec   (984 perm/sec)   p_kst 8.584034e-04   p_cons 1.134454e-05   p_joint 8.403361e-07

Joint ci ratio: 2.263211e+00	ci left: 1.013428e-07	ci right 3.022879e-06	k: 2	n:2390000
Cons ci ratio: 7.408059e-01	ci left: 7.444854e-06	ci right 1.643660e-05	k: 27	n:2390000
KS ci ratio: 8.637265e-02	ci left: 8.238888e-04	ci right 8.986680e-04	k: 2057	n:2390000
SLC2A6   2390000 perm   2437 sec   (981 perm/sec)   p_kst 8.606695e-04   p_cons 1.129707e-05   p_joint 8.368201e-07

Joint ci ratio: 2.263211e+00	ci left: 1.009205e-07	ci right 3.010283e-06	k: 2	n:2400000
Cons ci ratio: 7.408059e-01	ci left: 7.413834e-06	ci right 1.636812e-05	k: 27	n:2400000
KS ci ratio: 8.618440e-02	ci left: 8.241250e-04	ci right 8.987545e-04	k: 2066	n:2400000
SLC2A6   2400000 perm   2456 sec   (977 perm/sec)   p_kst 8.608333e-04   p_cons 1.125000e-05   p_joint 8.333333e-07

Joint ci ratio: 2.263211e+00	ci left: 1.005018e-07	ci right 2.997792e-06	k: 2	n:2410000
Cons ci ratio: 7.279212e-01	ci left: 7.720261e-06	ci right 1.679157e-05	k: 28	n:2410000
KS ci ratio: 8.610121e-02	ci left: 8.223294e-04	ci right 8.967207e-04	k: 2070	n:2410000
SLC2A6   2410000 perm   2475 sec   (974 perm/sec)   p_kst 8.589212e-04   p_cons 1.161826e-05   p_joint 8.298755e-07

Joint ci ratio: 1.959998e+00	ci left: 2.556497e-07	ci right 3.622836e-06	k: 3	n:2420000
Cons ci ratio: 7.156862e-01	ci left: 8.025533e-06	ci right 1.721022e-05	k: 29	n:2420000
KS ci ratio: 8.593540e-02	ci left: 8.221660e-04	ci right 8.963922e-04	k: 2078	n:2420000
SLC2A6   2420000 perm   2494 sec   (970 perm/sec)   p_kst 8.586777e-04   p_cons 1.198347e-05   p_joint 1.239669e-06

Joint ci ratio: 1.959998e+00	ci left: 2.545977e-07	ci right 3.607927e-06	k: 3	n:2430000
Cons ci ratio: 7.040481e-01	ci left: 8.329593e-06	ci right 1.762418e-05	k: 30	n:2430000
KS ci ratio: 8.570891e-02	ci left: 8.232122e-04	ci right 8.973272e-04	k: 2089	n:2430000
SLC2A6   2430000 perm   2513 sec   (967 perm/sec)   p_kst 8.596708e-04   p_cons 1.234568e-05   p_joint 1.234568e-06

Joint ci ratio: 1.959998e+00	ci left: 2.535542e-07	ci right 3.593140e-06	k: 3	n:2440000
Cons ci ratio: 7.040482e-01	ci left: 8.295455e-06	ci right 1.755195e-05	k: 30	n:2440000
KS ci ratio: 8.562709e-02	ci left: 8.214426e-04	ci right 8.953241e-04	k: 2093	n:2440000
SLC2A6   2440000 perm   2532 sec   (964 perm/sec)   p_kst 8.577869e-04   p_cons 1.229508e-05   p_joint 1.229508e-06

Joint ci ratio: 1.959998e+00	ci left: 2.525193e-07	ci right 3.578475e-06	k: 3	n:2450000
Cons ci ratio: 7.040482e-01	ci left: 8.261596e-06	ci right 1.748031e-05	k: 30	n:2450000
KS ci ratio: 8.552511e-02	ci left: 8.200869e-04	ci right 8.937542e-04	k: 2098	n:2450000
SLC2A6   2450000 perm   2551 sec   (960 perm/sec)   p_kst 8.563265e-04   p_cons 1.224490e-05   p_joint 1.224490e-06

Joint ci ratio: 1.959998e+00	ci left: 2.514928e-07	ci right 3.563928e-06	k: 3	n:2460000
Cons ci ratio: 7.040482e-01	ci left: 8.228012e-06	ci right 1.740925e-05	k: 30	n:2460000
KS ci ratio: 8.538288e-02	ci left: 8.195379e-04	ci right 8.930274e-04	k: 2105	n:2460000
SLC2A6   2460000 perm   2571 sec   (957 perm/sec)   p_kst 8.556911e-04   p_cons 1.219512e-05   p_joint 1.219512e-06

Joint ci ratio: 1.959998e+00	ci left: 2.504746e-07	ci right 3.549499e-06	k: 3	n:2470000
Cons ci ratio: 7.040482e-01	ci left: 8.194700e-06	ci right 1.733877e-05	k: 30	n:2470000
KS ci ratio: 8.528177e-02	ci left: 8.182010e-04	ci right 8.914794e-04	k: 2110	n:2470000
SLC2A6   2470000 perm   2590 sec   (954 perm/sec)   p_kst 8.542510e-04   p_cons 1.214575e-05   p_joint 1.214575e-06

Joint ci ratio: 1.959998e+00	ci left: 2.494646e-07	ci right 3.535187e-06	k: 3	n:2480000
Cons ci ratio: 7.040482e-01	ci left: 8.161657e-06	ci right 1.726885e-05	k: 30	n:2480000
KS ci ratio: 8.516087e-02	ci left: 8.172696e-04	ci right 8.903556e-04	k: 2116	n:2480000
SLC2A6   2480000 perm   2609 sec   (950 perm/sec)   p_kst 8.532258e-04   p_cons 1.209677e-05   p_joint 1.209677e-06

Joint ci ratio: 1.959998e+00	ci left: 2.484628e-07	ci right 3.520989e-06	k: 3	n:2490000
Cons ci ratio: 6.929601e-01	ci left: 8.459050e-06	ci right 1.767145e-05	k: 31	n:2490000
KS ci ratio: 8.502045e-02	ci left: 8.167388e-04	ci right 8.896510e-04	k: 2123	n:2490000
SLC2A6   2490000 perm   2628 sec   (947 perm/sec)   p_kst 8.526104e-04   p_cons 1.244980e-05   p_joint 1.204819e-06

Joint ci ratio: 1.959998e+00	ci left: 2.474689e-07	ci right 3.506905e-06	k: 3	n:2500000
Cons ci ratio: 6.929601e-01	ci left: 8.425213e-06	ci right 1.760076e-05	k: 31	n:2500000
KS ci ratio: 8.486080e-02	ci left: 8.166039e-04	ci right 8.893603e-04	k: 2131	n:2500000
SLC2A6   2500000 perm   2648 sec   (944 perm/sec)   p_kst 8.524000e-04   p_cons 1.240000e-05   p_joint 1.200000e-06

Joint ci ratio: 1.959998e+00	ci left: 2.464830e-07	ci right 3.492933e-06	k: 3	n:2510000
Cons ci ratio: 6.929601e-01	ci left: 8.391647e-06	ci right 1.753064e-05	k: 31	n:2510000
KS ci ratio: 8.460318e-02	ci left: 8.184200e-04	ci right 8.911060e-04	k: 2144	n:2510000
SLC2A6   2510000 perm   2668 sec   (941 perm/sec)   p_kst 8.541833e-04   p_cons 1.235060e-05   p_joint 1.195219e-06

Joint ci ratio: 1.959998e+00	ci left: 2.455049e-07	ci right 3.479073e-06	k: 3	n:2520000
Cons ci ratio: 6.929601e-01	ci left: 8.358347e-06	ci right 1.746108e-05	k: 31	n:2520000
KS ci ratio: 8.446549e-02	ci left: 8.178914e-04	ci right 8.904064e-04	k: 2151	n:2520000
SLC2A6   2520000 perm   2688 sec   (938 perm/sec)   p_kst 8.535714e-04   p_cons 1.230159e-05   p_joint 1.190476e-06

Joint ci ratio: 1.959998e+00	ci left: 2.445345e-07	ci right 3.465321e-06	k: 3	n:2530000
Cons ci ratio: 6.929601e-01	ci left: 8.325310e-06	ci right 1.739206e-05	k: 31	n:2530000
KS ci ratio: 8.430894e-02	ci left: 8.177539e-04	ci right 8.901158e-04	k: 2159	n:2530000
SLC2A6   2530000 perm   2708 sec   (934 perm/sec)   p_kst 8.533597e-04   p_cons 1.225296e-05   p_joint 1.185771e-06

Joint ci ratio: 1.959998e+00	ci left: 2.435718e-07	ci right 3.451678e-06	k: 3	n:2540000
Cons ci ratio: 6.929601e-01	ci left: 8.292533e-06	ci right 1.732359e-05	k: 31	n:2540000
KS ci ratio: 8.409504e-02	ci left: 8.187740e-04	ci right 8.910332e-04	k: 2170	n:2540000
SLC2A6   2540000 perm   2728 sec   (931 perm/sec)   p_kst 8.543307e-04   p_cons 1.220472e-05   p_joint 1.181102e-06

Joint ci ratio: 1.959998e+00	ci left: 2.426166e-07	ci right 3.438142e-06	k: 3	n:2550000
Cons ci ratio: 6.929602e-01	ci left: 8.260013e-06	ci right 1.725565e-05	k: 31	n:2550000
KS ci ratio: 8.384431e-02	ci left: 8.205541e-04	ci right 8.927440e-04	k: 2183	n:2550000
SLC2A6   2550000 perm   2748 sec   (928 perm/sec)   p_kst 8.560784e-04   p_cons 1.215686e-05   p_joint 1.176471e-06

Joint ci ratio: 1.959998e+00	ci left: 2.416689e-07	ci right 3.424712e-06	k: 3	n:2560000
Cons ci ratio: 6.929602e-01	ci left: 8.227747e-06	ci right 1.718825e-05	k: 31	n:2560000
KS ci ratio: 8.369118e-02	ci left: 8.204084e-04	ci right 8.924472e-04	k: 2191	n:2560000
SLC2A6   2560000 perm   2768 sec   (925 perm/sec)   p_kst 8.558594e-04   p_cons 1.210937e-05   p_joint 1.171875e-06

Joint ci ratio: 1.959998e+00	ci left: 2.407285e-07	ci right 3.411386e-06	k: 3	n:2570000
Cons ci ratio: 6.929602e-01	ci left: 8.195733e-06	ci right 1.712137e-05	k: 31	n:2570000
KS ci ratio: 8.346298e-02	ci left: 8.217878e-04	ci right 8.937414e-04	k: 2203	n:2570000
SLC2A6   2570000 perm   2788 sec   (922 perm/sec)   p_kst 8.571984e-04   p_cons 1.206226e-05   p_joint 1.167315e-06

Joint ci ratio: 1.959998e+00	ci left: 2.397955e-07	ci right 3.398164e-06	k: 3	n:2580000
Cons ci ratio: 6.929602e-01	ci left: 8.163966e-06	ci right 1.705501e-05	k: 31	n:2580000
KS ci ratio: 8.331192e-02	ci left: 8.216387e-04	ci right 8.934427e-04	k: 2211	n:2580000
SLC2A6   2580000 perm   2808 sec   (919 perm/sec)   p_kst 8.569767e-04   p_cons 1.201550e-05   p_joint 1.162791e-06

Joint ci ratio: 1.959998e+00	ci left: 2.388696e-07	ci right 3.385044e-06	k: 3	n:2590000
Cons ci ratio: 6.929602e-01	ci left: 8.132445e-06	ci right 1.698916e-05	k: 31	n:2590000
KS ci ratio: 8.319920e-02	ci left: 8.207347e-04	ci right 8.923580e-04	k: 2217	n:2590000
SLC2A6   2590000 perm   2828 sec   (916 perm/sec)   p_kst 8.559846e-04   p_cons 1.196911e-05   p_joint 1.158301e-06

Joint ci ratio: 1.959998e+00	ci left: 2.379509e-07	ci right 3.372024e-06	k: 3	n:2600000
Cons ci ratio: 6.929602e-01	ci left: 8.101166e-06	ci right 1.692381e-05	k: 31	n:2600000
KS ci ratio: 8.299362e-02	ci left: 8.217209e-04	ci right 8.932445e-04	k: 2228	n:2600000
SLC2A6   2600000 perm   2848 sec   (913 perm/sec)   p_kst 8.569231e-04   p_cons 1.192308e-05   p_joint 1.153846e-06

Joint ci ratio: 1.959998e+00	ci left: 2.370392e-07	ci right 3.359105e-06	k: 3	n:2610000
Cons ci ratio: 6.929603e-01	ci left: 8.070127e-06	ci right 1.685897e-05	k: 31	n:2610000
KS ci ratio: 8.284509e-02	ci left: 8.215741e-04	ci right 8.929508e-04	k: 2236	n:2610000
SLC2A6   2610000 perm   2869 sec   (910 perm/sec)   p_kst 8.567050e-04   p_cons 1.187739e-05   p_joint 1.149425e-06

Joint ci ratio: 1.959998e+00	ci left: 2.361345e-07	ci right 3.346284e-06	k: 3	n:2620000
Cons ci ratio: 6.929603e-01	ci left: 8.039325e-06	ci right 1.679462e-05	k: 31	n:2620000
KS ci ratio: 8.273426e-02	ci left: 8.206810e-04	ci right 8.918801e-04	k: 2242	n:2620000
SLC2A6   2620000 perm   2889 sec   (907 perm/sec)   p_kst 8.557252e-04   p_cons 1.183206e-05   p_joint 1.145038e-06

Joint ci ratio: 1.959998e+00	ci left: 2.352366e-07	ci right 3.333560e-06	k: 3	n:2630000
Cons ci ratio: 6.929603e-01	ci left: 8.008757e-06	ci right 1.673077e-05	k: 31	n:2630000
KS ci ratio: 8.260548e-02	ci left: 8.201671e-04	ci right 8.912055e-04	k: 2249	n:2630000
SLC2A6   2630000 perm   2909 sec   (904 perm/sec)   p_kst 8.551331e-04   p_cons 1.178707e-05   p_joint 1.140684e-06

Joint ci ratio: 1.959998e+00	ci left: 2.343456e-07	ci right 3.320933e-06	k: 3	n:2640000
Cons ci ratio: 6.823800e-01	ci left: 8.290914e-06	ci right 1.711149e-05	k: 32	n:2640000
KS ci ratio: 8.255055e-02	ci left: 8.181733e-04	ci right 8.889896e-04	k: 2252	n:2640000
SLC2A6   2640000 perm   2930 sec   (901 perm/sec)   p_kst 8.530303e-04   p_cons 1.212121e-05   p_joint 1.136364e-06

Joint ci ratio: 1.959998e+00	ci left: 2.334612e-07	ci right 3.308401e-06	k: 3	n:2650000
Cons ci ratio: 6.722700e-01	ci left: 8.571970e-06	ci right 1.748836e-05	k: 33	n:2650000
KS ci ratio: 8.242264e-02	ci left: 8.176728e-04	ci right 8.883309e-04	k: 2259	n:2650000
SLC2A6   2650000 perm   2951 sec   (898 perm/sec)   p_kst 8.524528e-04   p_cons 1.245283e-05   p_joint 1.132075e-06

Joint ci ratio: 1.959998e+00	ci left: 2.325836e-07	ci right 3.295964e-06	k: 3	n:2660000
Cons ci ratio: 6.722700e-01	ci left: 8.539745e-06	ci right 1.742261e-05	k: 33	n:2660000
KS ci ratio: 8.234986e-02	ci left: 8.160716e-04	ci right 8.865261e-04	k: 2263	n:2660000
SLC2A6   2660000 perm   2972 sec   (895 perm/sec)   p_kst 8.507519e-04   p_cons 1.240602e-05   p_joint 1.127820e-06

Joint ci ratio: 1.959998e+00	ci left: 2.317125e-07	ci right 3.283619e-06	k: 3	n:2670000
Cons ci ratio: 6.722700e-01	ci left: 8.507761e-06	ci right 1.735736e-05	k: 33	n:2670000
KS ci ratio: 8.218666e-02	ci left: 8.163166e-04	ci right 8.866459e-04	k: 2272	n:2670000
SLC2A6   2670000 perm   2992 sec   (892 perm/sec)   p_kst 8.509363e-04   p_cons 1.235955e-05   p_joint 1.123596e-06

Joint ci ratio: 1.959998e+00	ci left: 2.308479e-07	ci right 3.271367e-06	k: 3	n:2680000
Cons ci ratio: 6.722701e-01	ci left: 8.476015e-06	ci right 1.729259e-05	k: 33	n:2680000
KS ci ratio: 8.202442e-02	ci left: 8.165599e-04	ci right 8.867646e-04	k: 2281	n:2680000
SLC2A6   2680000 perm   3013 sec   (889 perm/sec)   p_kst 8.511194e-04   p_cons 1.231343e-05   p_joint 1.119403e-06

Joint ci ratio: 1.959998e+00	ci left: 2.299897e-07	ci right 3.259206e-06	k: 3	n:2690000
Cons ci ratio: 6.625965e-01	ci left: 8.753171e-06	ci right 1.766226e-05	k: 34	n:2690000
KS ci ratio: 8.186314e-02	ci left: 8.168016e-04	ci right 8.868824e-04	k: 2290	n:2690000
SLC2A6   2690000 perm   3034 sec   (887 perm/sec)   p_kst 8.513011e-04   p_cons 1.263941e-05   p_joint 1.115242e-06

Joint ci ratio: 1.959998e+00	ci left: 2.291379e-07	ci right 3.247135e-06	k: 3	n:2700000
Cons ci ratio: 6.625965e-01	ci left: 8.720752e-06	ci right 1.759684e-05	k: 34	n:2700000
KS ci ratio: 8.166728e-02	ci left: 8.177672e-04	ci right 8.877549e-04	k: 2301	n:2700000
SLC2A6   2700000 perm   3055 sec   (884 perm/sec)   p_kst 8.522222e-04   p_cons 1.259259e-05   p_joint 1.111111e-06

Joint ci ratio: 1.959998e+00	ci left: 2.282924e-07	ci right 3.235153e-06	k: 3	n:2710000
Cons ci ratio: 6.625965e-01	ci left: 8.688572e-06	ci right 1.753191e-05	k: 34	n:2710000
KS ci ratio: 8.157879e-02	ci left: 8.165569e-04	ci right 8.863618e-04	k: 2306	n:2710000
SLC2A6   2710000 perm   3076 sec   (881 perm/sec)   p_kst 8.509225e-04   p_cons 1.254613e-05   p_joint 1.107011e-06

Joint ci ratio: 1.959998e+00	ci left: 2.274530e-07	ci right 3.223259e-06	k: 3	n:2720000
Cons ci ratio: 6.625966e-01	ci left: 8.656628e-06	ci right 1.746745e-05	k: 34	n:2720000
KS ci ratio: 8.138496e-02	ci left: 8.175166e-04	ci right 8.872296e-04	k: 2317	n:2720000
SLC2A6   2720000 perm   3098 sec   (878 perm/sec)   p_kst 8.518382e-04   p_cons 1.250000e-05   p_joint 1.102941e-06

Joint ci ratio: 1.959998e+00	ci left: 2.266199e-07	ci right 3.211452e-06	k: 3	n:2730000
Cons ci ratio: 6.625966e-01	ci left: 8.624919e-06	ci right 1.740347e-05	k: 34	n:2730000
KS ci ratio: 8.120995e-02	ci left: 8.181106e-04	ci right 8.877171e-04	k: 2327	n:2730000
SLC2A6   2730000 perm   3119 sec   (875 perm/sec)   p_kst 8.523810e-04   p_cons 1.245421e-05   p_joint 1.098901e-06

Joint ci ratio: 1.959998e+00	ci left: 2.257928e-07	ci right 3.199731e-06	k: 3	n:2740000
Cons ci ratio: 6.625966e-01	ci left: 8.593441e-06	ci right 1.733995e-05	k: 34	n:2740000
KS ci ratio: 8.107078e-02	ci left: 8.179852e-04	ci right 8.874562e-04	k: 2335	n:2740000
SLC2A6   2740000 perm   3140 sec   (873 perm/sec)   p_kst 8.521898e-04   p_cons 1.240876e-05   p_joint 1.094891e-06

Joint ci ratio: 1.959998e+00	ci left: 2.249717e-07	ci right 3.188096e-06	k: 3	n:2750000
Cons ci ratio: 6.625966e-01	ci left: 8.562192e-06	ci right 1.727690e-05	k: 34	n:2750000
KS ci ratio: 8.088054e-02	ci left: 8.189298e-04	ci right 8.883101e-04	k: 2346	n:2750000
SLC2A6   2750000 perm   3161 sec   (870 perm/sec)   p_kst 8.530909e-04   p_cons 1.236364e-05   p_joint 1.090909e-06

Joint ci ratio: 1.959998e+00	ci left: 2.241566e-07	ci right 3.176545e-06	k: 3	n:2760000
Cons ci ratio: 6.625966e-01	ci left: 8.531170e-06	ci right 1.721430e-05	k: 34	n:2760000
KS ci ratio: 8.076022e-02	ci left: 8.184476e-04	ci right 8.876790e-04	k: 2353	n:2760000
SLC2A6   2760000 perm   3182 sec   (867 perm/sec)   p_kst 8.525362e-04   p_cons 1.231884e-05   p_joint 1.086957e-06

Joint ci ratio: 1.959998e+00	ci left: 2.233474e-07	ci right 3.165077e-06	k: 3	n:2770000
Cons ci ratio: 6.625966e-01	ci left: 8.500371e-06	ci right 1.715216e-05	k: 34	n:2770000
KS ci ratio: 8.064043e-02	ci left: 8.179690e-04	ci right 8.870525e-04	k: 2360	n:2770000
SLC2A6   2770000 perm   3203 sec   (865 perm/sec)   p_kst 8.519856e-04   p_cons 1.227437e-05   p_joint 1.083032e-06

Joint ci ratio: 1.959998e+00	ci left: 2.225440e-07	ci right 3.153692e-06	k: 3	n:2780000
Cons ci ratio: 6.625966e-01	ci left: 8.469794e-06	ci right 1.709046e-05	k: 34	n:2780000
KS ci ratio: 8.048716e-02	ci left: 8.181988e-04	ci right 8.871643e-04	k: 2369	n:2780000
SLC2A6   2780000 perm   3225 sec   (862 perm/sec)   p_kst 8.521583e-04   p_cons 1.223022e-05   p_joint 1.079137e-06

Joint ci ratio: 1.959998e+00	ci left: 2.217463e-07	ci right 3.142389e-06	k: 3	n:2790000
Cons ci ratio: 6.625967e-01	ci left: 8.439437e-06	ci right 1.702920e-05	k: 34	n:2790000
KS ci ratio: 8.031787e-02	ci left: 8.187784e-04	ci right 8.876407e-04	k: 2379	n:2790000
SLC2A6   2790000 perm   3246 sec   (860 perm/sec)   p_kst 8.526882e-04   p_cons 1.218638e-05   p_joint 1.075269e-06

Joint ci ratio: 1.753075e+00	ci left: 3.892378e-07	ci right 3.657706e-06	k: 4	n:2800000
Cons ci ratio: 6.533290e-01	ci left: 8.706723e-06	ci right 1.738443e-05	k: 35	n:2800000
KS ci ratio: 8.008260e-02	ci left: 8.207540e-04	ci right 8.895708e-04	k: 2393	n:2800000
SLC2A6   2800000 perm   3268 sec   (857 perm/sec)   p_kst 8.546429e-04   p_cons 1.250000e-05   p_joint 1.428571e-06

Joint ci ratio: 1.753075e+00	ci left: 3.878526e-07	ci right 3.644689e-06	k: 4	n:2810000
Cons ci ratio: 6.533290e-01	ci left: 8.675738e-06	ci right 1.732257e-05	k: 35	n:2810000
KS ci ratio: 7.998247e-02	ci left: 8.199256e-04	ci right 8.885830e-04	k: 2399	n:2810000
SLC2A6   2810000 perm   3289 sec   (854 perm/sec)   p_kst 8.537367e-04   p_cons 1.245552e-05   p_joint 1.423488e-06

Joint ci ratio: 1.753075e+00	ci left: 3.864772e-07	ci right 3.631765e-06	k: 4	n:2820000
Cons ci ratio: 6.533290e-01	ci left: 8.644973e-06	ci right 1.726114e-05	k: 35	n:2820000
KS ci ratio: 7.981634e-02	ci left: 8.204933e-04	ci right 8.890490e-04	k: 2409	n:2820000
SLC2A6   2820000 perm   3311 sec   (852 perm/sec)   p_kst 8.542553e-04   p_cons 1.241135e-05   p_joint 1.418440e-06

Joint ci ratio: 1.753075e+00	ci left: 3.851116e-07	ci right 3.618932e-06	k: 4	n:2830000
Cons ci ratio: 6.533291e-01	ci left: 8.614425e-06	ci right 1.720014e-05	k: 35	n:2830000
KS ci ratio: 7.965124e-02	ci left: 8.210572e-04	ci right 8.895114e-04	k: 2419	n:2830000
SLC2A6   2830000 perm   3332 sec   (849 perm/sec)   p_kst 8.547703e-04   p_cons 1.236749e-05   p_joint 1.413428e-06

Joint ci ratio: 1.753075e+00	ci left: 3.837555e-07	ci right 3.606189e-06	k: 4	n:2840000
Cons ci ratio: 6.533291e-01	ci left: 8.584093e-06	ci right 1.713958e-05	k: 35	n:2840000
KS ci ratio: 7.945444e-02	ci left: 8.223075e-04	ci right 8.906887e-04	k: 2431	n:2840000
SLC2A6   2840000 perm   3354 sec   (847 perm/sec)   p_kst 8.559859e-04   p_cons 1.232394e-05   p_joint 1.408451e-06

Joint ci ratio: 1.753075e+00	ci left: 3.824090e-07	ci right 3.593536e-06	k: 4	n:2850000
Cons ci ratio: 6.533291e-01	ci left: 8.553973e-06	ci right 1.707944e-05	k: 35	n:2850000
KS ci ratio: 7.927533e-02	ci left: 8.232052e-04	ci right 8.914997e-04	k: 2442	n:2850000
SLC2A6   2850000 perm   3376 sec   (844 perm/sec)   p_kst 8.568421e-04   p_cons 1.228070e-05   p_joint 1.403509e-06

Joint ci ratio: 1.753075e+00	ci left: 3.810719e-07	ci right 3.580971e-06	k: 4	n:2860000
Cons ci ratio: 6.533291e-01	ci left: 8.524064e-06	ci right 1.701972e-05	k: 35	n:2860000
KS ci ratio: 7.917819e-02	ci left: 8.223832e-04	ci right 8.905220e-04	k: 2448	n:2860000
SLC2A6   2860000 perm   3399 sec   (842 perm/sec)   p_kst 8.559441e-04   p_cons 1.223776e-05   p_joint 1.398601e-06

Joint ci ratio: 1.753075e+00	ci left: 3.797442e-07	ci right 3.568494e-06	k: 4	n:2870000
Cons ci ratio: 6.533291e-01	ci left: 8.494364e-06	ci right 1.696042e-05	k: 35	n:2870000
KS ci ratio: 7.896881e-02	ci left: 8.239579e-04	ci right 8.920383e-04	k: 2461	n:2870000
SLC2A6   2870000 perm   3420 sec   (839 perm/sec)   p_kst 8.574913e-04   p_cons 1.219512e-05   p_joint 1.393728e-06

Joint ci ratio: 1.753075e+00	ci left: 3.784256e-07	ci right 3.556103e-06	k: 4	n:2880000
Cons ci ratio: 6.533291e-01	ci left: 8.464869e-06	ci right 1.690153e-05	k: 35	n:2880000
KS ci ratio: 7.884083e-02	ci left: 8.238199e-04	ci right 8.917735e-04	k: 2469	n:2880000
SLC2A6   2880000 perm   3443 sec   (837 perm/sec)   p_kst 8.572917e-04   p_cons 1.215278e-05   p_joint 1.388889e-06

Joint ci ratio: 1.753075e+00	ci left: 3.771162e-07	ci right 3.543798e-06	k: 4	n:2890000
Cons ci ratio: 6.533292e-01	ci left: 8.435579e-06	ci right 1.684305e-05	k: 35	n:2890000
KS ci ratio: 7.866583e-02	ci left: 8.247006e-04	ci right 8.925690e-04	k: 2480	n:2890000
SLC2A6   2890000 perm   3465 sec   (834 perm/sec)   p_kst 8.581315e-04   p_cons 1.211073e-05   p_joint 1.384083e-06

Joint ci ratio: 1.753075e+00	ci left: 3.758158e-07	ci right 3.531579e-06	k: 4	n:2900000
Cons ci ratio: 6.533292e-01	ci left: 8.406491e-06	ci right 1.678497e-05	k: 35	n:2900000
KS ci ratio: 7.849198e-02	ci left: 8.255753e-04	ci right 8.933588e-04	k: 2491	n:2900000
SLC2A6   2900000 perm   3487 sec   (832 perm/sec)   p_kst 8.589655e-04   p_cons 1.206897e-05   p_joint 1.379310e-06

Joint ci ratio: 1.753075e+00	ci left: 3.745243e-07	ci right 3.519443e-06	k: 4	n:2910000
Cons ci ratio: 6.533292e-01	ci left: 8.377602e-06	ci right 1.672729e-05	k: 35	n:2910000
KS ci ratio: 7.836630e-02	ci left: 8.254335e-04	ci right 8.930918e-04	k: 2499	n:2910000
SLC2A6   2910000 perm   3509 sec   (829 perm/sec)   p_kst 8.587629e-04   p_cons 1.202749e-05   p_joint 1.374570e-06

Joint ci ratio: 1.753075e+00	ci left: 3.732417e-07	ci right 3.507390e-06	k: 4	n:2920000
Cons ci ratio: 6.533292e-01	ci left: 8.348912e-06	ci right 1.667000e-05	k: 35	n:2920000
KS ci ratio: 7.821002e-02	ci left: 8.259643e-04	ci right 8.935250e-04	k: 2509	n:2920000
SLC2A6   2920000 perm   3531 sec   (827 perm/sec)   p_kst 8.592466e-04   p_cons 1.198630e-05   p_joint 1.369863e-06

Joint ci ratio: 1.753075e+00	ci left: 3.719678e-07	ci right 3.495419e-06	k: 4	n:2930000
Cons ci ratio: 6.444399e-01	ci left: 8.605461e-06	ci right 1.700992e-05	k: 36	n:2930000
KS ci ratio: 7.810121e-02	ci left: 8.254877e-04	ci right 8.929112e-04	k: 2516	n:2930000
SLC2A6   2930000 perm   3554 sec   (824 perm/sec)   p_kst 8.587031e-04   p_cons 1.228669e-05   p_joint 1.365188e-06

Joint ci ratio: 1.753076e+00	ci left: 3.707026e-07	ci right 3.483530e-06	k: 4	n:2940000
Cons ci ratio: 6.444399e-01	ci left: 8.576190e-06	ci right 1.695206e-05	k: 36	n:2940000
KS ci ratio: 7.794651e-02	ci left: 8.260150e-04	ci right 8.933418e-04	k: 2526	n:2940000
SLC2A6   2940000 perm   3577 sec   (822 perm/sec)   p_kst 8.591837e-04   p_cons 1.224490e-05   p_joint 1.360544e-06

Joint ci ratio: 1.753076e+00	ci left: 3.694460e-07	ci right 3.471721e-06	k: 4	n:2950000
Cons ci ratio: 6.444399e-01	ci left: 8.547118e-06	ci right 1.689460e-05	k: 36	n:2950000
KS ci ratio: 7.783879e-02	ci left: 8.255416e-04	ci right 8.927326e-04	k: 2533	n:2950000
SLC2A6   2950000 perm   3600 sec   (819 perm/sec)   p_kst 8.586441e-04   p_cons 1.220339e-05   p_joint 1.355932e-06

Joint ci ratio: 1.753076e+00	ci left: 3.681979e-07	ci right 3.459993e-06	k: 4	n:2960000
Cons ci ratio: 6.444399e-01	ci left: 8.518243e-06	ci right 1.683752e-05	k: 36	n:2960000
KS ci ratio: 7.762458e-02	ci left: 8.273904e-04	ci right 8.945382e-04	k: 2547	n:2960000
SLC2A6   2960000 perm   3623 sec   (817 perm/sec)   p_kst 8.604730e-04   p_cons 1.216216e-05   p_joint 1.351351e-06

Joint ci ratio: 1.753076e+00	ci left: 3.669582e-07	ci right 3.448343e-06	k: 4	n:2970000
Cons ci ratio: 6.359038e-01	ci left: 8.771535e-06	ci right 1.717155e-05	k: 37	n:2970000
KS ci ratio: 7.748785e-02	ci left: 8.275761e-04	ci right 8.946154e-04	k: 2556	n:2970000
SLC2A6   2970000 perm   3646 sec   (815 perm/sec)   p_kst 8.606061e-04   p_cons 1.245791e-05   p_joint 1.346801e-06

Joint ci ratio: 1.753076e+00	ci left: 3.657268e-07	ci right 3.436771e-06	k: 4	n:2980000
Cons ci ratio: 6.359038e-01	ci left: 8.742100e-06	ci right 1.711393e-05	k: 37	n:2980000
KS ci ratio: 7.736692e-02	ci left: 8.274316e-04	ci right 8.943498e-04	k: 2564	n:2980000
SLC2A6   2980000 perm   3669 sec   (812 perm/sec)   p_kst 8.604027e-04   p_cons 1.241611e-05   p_joint 1.342282e-06

Joint ci ratio: 1.753076e+00	ci left: 3.645036e-07	ci right 3.425277e-06	k: 4	n:2990000
Cons ci ratio: 6.359038e-01	ci left: 8.712862e-06	ci right 1.705669e-05	k: 37	n:2990000
KS ci ratio: 7.724656e-02	ci left: 8.272881e-04	ci right 8.940860e-04	k: 2572	n:2990000
SLC2A6   2990000 perm   3692 sec   (810 perm/sec)   p_kst 8.602007e-04   p_cons 1.237458e-05   p_joint 1.337793e-06

Joint ci ratio: 1.753076e+00	ci left: 3.632886e-07	ci right 3.413859e-06	k: 4	n:3000000
Cons ci ratio: 6.276982e-01	ci left: 8.963702e-06	ci right 1.738595e-05	k: 38	n:3000000
KS ci ratio: 7.712676e-02	ci left: 8.271457e-04	ci right 8.938238e-04	k: 2580	n:3000000
SLC2A6   3000000 perm   3715 sec   (808 perm/sec)   p_kst 8.600000e-04   p_cons 1.266667e-05   p_joint 1.333333e-06

Joint ci ratio: 1.753076e+00	ci left: 3.620816e-07	ci right 3.402518e-06	k: 4	n:3010000
Cons ci ratio: 6.276982e-01	ci left: 8.933923e-06	ci right 1.732819e-05	k: 38	n:3010000
KS ci ratio: 7.702241e-02	ci left: 8.266784e-04	ci right 8.932247e-04	k: 2587	n:3010000
SLC2A6   3010000 perm   3738 sec   (805 perm/sec)   p_kst 8.594684e-04   p_cons 1.262458e-05   p_joint 1.328904e-06

Joint ci ratio: 1.753076e+00	ci left: 3.608827e-07	ci right 3.391251e-06	k: 4	n:3020000
Cons ci ratio: 6.276982e-01	ci left: 8.904340e-06	ci right 1.727081e-05	k: 38	n:3020000
KS ci ratio: 7.685921e-02	ci left: 8.275134e-04	ci right 8.939794e-04	k: 2598	n:3020000
SLC2A6   3020000 perm   3762 sec   (803 perm/sec)   p_kst 8.602649e-04   p_cons 1.258278e-05   p_joint 1.324503e-06

Joint ci ratio: 1.753076e+00	ci left: 3.596917e-07	ci right 3.380059e-06	k: 4	n:3030000
Cons ci ratio: 6.198022e-01	ci left: 9.152759e-06	ci right 1.759543e-05	k: 39	n:3030000
KS ci ratio: 7.668234e-02	ci left: 8.286667e-04	ci right 8.950654e-04	k: 2610	n:3030000
SLC2A6   3030000 perm   3785 sec   (801 perm/sec)   p_kst 8.613861e-04   p_cons 1.287129e-05   p_joint 1.320132e-06

Joint ci ratio: 1.753076e+00	ci left: 3.585085e-07	ci right 3.368940e-06	k: 4	n:3040000
Cons ci ratio: 6.198022e-01	ci left: 9.122651e-06	ci right 1.753755e-05	k: 39	n:3040000
KS ci ratio: 7.655052e-02	ci left: 8.288447e-04	ci right 8.951383e-04	k: 2619	n:3040000
SLC2A6   3040000 perm   3808 sec   (798 perm/sec)   p_kst 8.615132e-04   p_cons 1.282895e-05   p_joint 1.315789e-06

Joint ci ratio: 1.753076e+00	ci left: 3.573330e-07	ci right 3.357894e-06	k: 4	n:3050000
Cons ci ratio: 6.198023e-01	ci left: 9.092741e-06	ci right 1.748005e-05	k: 39	n:3050000
KS ci ratio: 7.643392e-02	ci left: 8.286999e-04	ci right 8.948766e-04	k: 2627	n:3050000
SLC2A6   3050000 perm   3831 sec   (796 perm/sec)   p_kst 8.613115e-04   p_cons 1.278689e-05   p_joint 1.311475e-06

Joint ci ratio: 1.753076e+00	ci left: 3.561653e-07	ci right 3.346921e-06	k: 4	n:3060000
Cons ci ratio: 6.198023e-01	ci left: 9.063026e-06	ci right 1.742293e-05	k: 39	n:3060000
KS ci ratio: 7.634685e-02	ci left: 8.279151e-04	ci right 8.939504e-04	k: 2633	n:3060000
SLC2A6   3060000 perm   3855 sec   (794 perm/sec)   p_kst 8.604575e-04   p_cons 1.274510e-05   p_joint 1.307190e-06

Joint ci ratio: 1.753076e+00	ci left: 3.550051e-07	ci right 3.336019e-06	k: 4	n:3070000
Cons ci ratio: 6.198023e-01	ci left: 9.033505e-06	ci right 1.736618e-05	k: 39	n:3070000
KS ci ratio: 7.628900e-02	ci left: 8.264963e-04	ci right 8.923663e-04	k: 2637	n:3070000
SLC2A6   3070000 perm   3879 sec   (792 perm/sec)   p_kst 8.589577e-04   p_cons 1.270358e-05   p_joint 1.302932e-06

Joint ci ratio: 1.753076e+00	ci left: 3.538525e-07	ci right 3.325188e-06	k: 4	n:3080000
Cons ci ratio: 6.121970e-01	ci left: 9.278128e-06	ci right 1.768458e-05	k: 40	n:3080000
KS ci ratio: 7.617359e-02	ci left: 8.263608e-04	ci right 8.921159e-04	k: 2645	n:3080000
SLC2A6   3080000 perm   3902 sec   (789 perm/sec)   p_kst 8.587662e-04   p_cons 1.298701e-05   p_joint 1.298701e-06

Joint ci ratio: 1.753076e+00	ci left: 3.527073e-07	ci right 3.314427e-06	k: 4	n:3090000
Cons ci ratio: 6.121970e-01	ci left: 9.248102e-06	ci right 1.762735e-05	k: 40	n:3090000
KS ci ratio: 7.604437e-02	ci left: 8.265437e-04	ci right 8.921969e-04	k: 2654	n:3090000
SLC2A6   3090000 perm   3926 sec   (787 perm/sec)   p_kst 8.588997e-04   p_cons 1.294498e-05   p_joint 1.294498e-06

Joint ci ratio: 1.753076e+00	ci left: 3.515696e-07	ci right 3.303735e-06	k: 4	n:3100000
Cons ci ratio: 6.121970e-01	ci left: 9.218269e-06	ci right 1.757049e-05	k: 40	n:3100000
KS ci ratio: 7.591580e-02	ci left: 8.267255e-04	ci right 8.922772e-04	k: 2663	n:3100000
SLC2A6   3100000 perm   3950 sec   (785 perm/sec)   p_kst 8.590323e-04   p_cons 1.290323e-05   p_joint 1.290323e-06

Joint ci ratio: 1.753076e+00	ci left: 3.504391e-07	ci right 3.293112e-06	k: 4	n:3110000
Cons ci ratio: 6.121970e-01	ci left: 9.188628e-06	ci right 1.751399e-05	k: 40	n:3110000
KS ci ratio: 7.584471e-02	ci left: 8.256444e-04	ci right 8.910464e-04	k: 2668	n:3110000
SLC2A6   3110000 perm   3974 sec   (783 perm/sec)   p_kst 8.578778e-04   p_cons 1.286174e-05   p_joint 1.286174e-06

Joint ci ratio: 1.753076e+00	ci left: 3.493159e-07	ci right 3.282557e-06	k: 4	n:3120000
Cons ci ratio: 6.121970e-01	ci left: 9.159178e-06	ci right 1.745786e-05	k: 40	n:3120000
KS ci ratio: 7.570300e-02	ci left: 8.261425e-04	ci right 8.914563e-04	k: 2678	n:3120000
SLC2A6   3120000 perm   3998 sec   (780 perm/sec)   p_kst 8.583333e-04   p_cons 1.282051e-05   p_joint 1.282051e-06

Joint ci ratio: 1.753076e+00	ci left: 3.481999e-07	ci right 3.272070e-06	k: 4	n:3130000
Cons ci ratio: 6.121970e-01	ci left: 9.129915e-06	ci right 1.740208e-05	k: 40	n:3130000
KS ci ratio: 7.551994e-02	ci left: 8.275779e-04	ci right 8.928400e-04	k: 2691	n:3130000
SLC2A6   3130000 perm   4022 sec   (778 perm/sec)   p_kst 8.597444e-04   p_cons 1.277955e-05   p_joint 1.277955e-06

Joint ci ratio: 1.753076e+00	ci left: 3.470910e-07	ci right 3.261649e-06	k: 4	n:3140000
Cons ci ratio: 6.121971e-01	ci left: 9.100839e-06	ci right 1.734666e-05	k: 40	n:3140000
KS ci ratio: 7.540798e-02	ci left: 8.274420e-04	ci right 8.925924e-04	k: 2699	n:3140000
SLC2A6   3140000 perm   4047 sec   (776 perm/sec)   p_kst 8.595541e-04   p_cons 1.273885e-05   p_joint 1.273885e-06

Joint ci ratio: 1.753076e+00	ci left: 3.459891e-07	ci right 3.251295e-06	k: 4	n:3150000
Cons ci ratio: 6.048650e-01	ci left: 9.340431e-06	ci right 1.765746e-05	k: 41	n:3150000
KS ci ratio: 7.532437e-02	ci left: 8.266841e-04	ci right 8.916995e-04	k: 2705	n:3150000
SLC2A6   3150000 perm   4071 sec   (774 perm/sec)   p_kst 8.587302e-04   p_cons 1.301587e-05   p_joint 1.269841e-06

Joint ci ratio: 1.753076e+00	ci left: 3.448942e-07	ci right 3.241006e-06	k: 4	n:3160000
Cons ci ratio: 6.048650e-01	ci left: 9.310873e-06	ci right 1.760158e-05	k: 41	n:3160000
KS ci ratio: 7.522715e-02	ci left: 8.262415e-04	ci right 8.911345e-04	k: 2712	n:3160000
SLC2A6   3160000 perm   4095 sec   (772 perm/sec)   p_kst 8.582278e-04   p_cons 1.297468e-05   p_joint 1.265823e-06

Joint ci ratio: 1.753076e+00	ci left: 3.438062e-07	ci right 3.230782e-06	k: 4	n:3170000
Cons ci ratio: 6.048650e-01	ci left: 9.281501e-06	ci right 1.754606e-05	k: 41	n:3170000
KS ci ratio: 7.507507e-02	ci left: 8.270399e-04	ci right 8.918586e-04	k: 2723	n:3170000
SLC2A6   3170000 perm   4119 sec   (770 perm/sec)   p_kst 8.589905e-04   p_cons 1.293375e-05   p_joint 1.261830e-06

Joint ci ratio: 1.753076e+00	ci left: 3.427251e-07	ci right 3.220622e-06	k: 4	n:3180000
Cons ci ratio: 6.048650e-01	ci left: 9.252313e-06	ci right 1.749088e-05	k: 41	n:3180000
KS ci ratio: 7.491021e-02	ci left: 8.281419e-04	ci right 8.928983e-04	k: 2735	n:3180000
SLC2A6   3180000 perm   4144 sec   (767 perm/sec)   p_kst 8.600629e-04   p_cons 1.289308e-05   p_joint 1.257862e-06

Joint ci ratio: 1.753076e+00	ci left: 3.416507e-07	ci right 3.210526e-06	k: 4	n:3190000
Cons ci ratio: 6.048651e-01	ci left: 9.223309e-06	ci right 1.743605e-05	k: 41	n:3190000
KS ci ratio: 7.476005e-02	ci left: 8.289296e-04	ci right 8.936120e-04	k: 2746	n:3190000
SLC2A6   3190000 perm   4169 sec   (765 perm/sec)   p_kst 8.608150e-04   p_cons 1.285266e-05   p_joint 1.253918e-06

Joint ci ratio: 1.753076e+00	ci left: 3.405830e-07	ci right 3.200493e-06	k: 4	n:3200000
Cons ci ratio: 6.048651e-01	ci left: 9.194486e-06	ci right 1.738156e-05	k: 41	n:3200000
KS ci ratio: 7.465144e-02	ci left: 8.287925e-04	ci right 8.933662e-04	k: 2754	n:3200000
SLC2A6   3200000 perm   4194 sec   (763 perm/sec)   p_kst 8.606250e-04   p_cons 1.281250e-05   p_joint 1.250000e-06

Joint ci ratio: 1.753076e+00	ci left: 3.395220e-07	ci right 3.190523e-06	k: 4	n:3210000
Cons ci ratio: 6.048651e-01	ci left: 9.165843e-06	ci right 1.732742e-05	k: 41	n:3210000
KS ci ratio: 7.454329e-02	ci left: 8.286564e-04	ci right 8.931218e-04	k: 2762	n:3210000
SLC2A6   3210000 perm   4219 sec   (761 perm/sec)   p_kst 8.604361e-04   p_cons 1.277259e-05   p_joint 1.246106e-06

Joint ci ratio: 1.600332e+00	ci left: 5.041885e-07	ci right 3.623702e-06	k: 5	n:3220000
Cons ci ratio: 5.977903e-01	ci left: 9.400608e-06	ci right 1.763095e-05	k: 42	n:3220000
KS ci ratio: 7.444906e-02	ci left: 8.282163e-04	ci right 8.925625e-04	k: 2769	n:3220000
SLC2A6   3220000 perm   4244 sec   (759 perm/sec)   p_kst 8.599379e-04   p_cons 1.304348e-05   p_joint 1.552795e-06

Joint ci ratio: 1.600332e+00	ci left: 5.026276e-07	ci right 3.612483e-06	k: 5	n:3230000
Cons ci ratio: 5.977903e-01	ci left: 9.371503e-06	ci right 1.757637e-05	k: 42	n:3230000
KS ci ratio: 7.432841e-02	ci left: 8.283867e-04	ci right 8.926374e-04	k: 2778	n:3230000
SLC2A6   3230000 perm   4268 sec   (757 perm/sec)   p_kst 8.600619e-04   p_cons 1.300310e-05   p_joint 1.547988e-06

Joint ci ratio: 1.600332e+00	ci left: 5.010762e-07	ci right 3.601333e-06	k: 5	n:3240000
Cons ci ratio: 5.977903e-01	ci left: 9.342579e-06	ci right 1.752212e-05	k: 42	n:3240000
KS ci ratio: 7.420833e-02	ci left: 8.285562e-04	ci right 8.927117e-04	k: 2787	n:3240000
SLC2A6   3240000 perm   4293 sec   (755 perm/sec)   p_kst 8.601852e-04   p_cons 1.296296e-05   p_joint 1.543210e-06

Joint ci ratio: 1.600332e+00	ci left: 4.995345e-07	ci right 3.590252e-06	k: 5	n:3250000
Cons ci ratio: 5.909581e-01	ci left: 9.575189e-06	ci right 1.782172e-05	k: 43	n:3250000
KS ci ratio: 7.399623e-02	ci left: 8.308386e-04	ci right 8.949791e-04	k: 2803	n:3250000
SLC2A6   3250000 perm   4318 sec   (753 perm/sec)   p_kst 8.624615e-04   p_cons 1.323077e-05   p_joint 1.538462e-06

Joint ci ratio: 1.600332e+00	ci left: 4.980021e-07	ci right 3.579239e-06	k: 5	n:3260000
Cons ci ratio: 5.909582e-01	ci left: 9.545818e-06	ci right 1.776705e-05	k: 43	n:3260000
KS ci ratio: 7.390405e-02	ci left: 8.303976e-04	ci right 8.944207e-04	k: 2810	n:3260000
SLC2A6   3260000 perm   4343 sec   (751 perm/sec)   p_kst 8.619632e-04   p_cons 1.319018e-05   p_joint 1.533742e-06

Joint ci ratio: 1.600332e+00	ci left: 4.964792e-07	ci right 3.568294e-06	k: 5	n:3270000
Cons ci ratio: 5.909582e-01	ci left: 9.516625e-06	ci right 1.771272e-05	k: 43	n:3270000
KS ci ratio: 7.374677e-02	ci left: 8.314601e-04	ci right 8.954229e-04	k: 2822	n:3270000
SLC2A6   3270000 perm   4368 sec   (749 perm/sec)   p_kst 8.629969e-04   p_cons 1.314985e-05   p_joint 1.529052e-06

Joint ci ratio: 1.087210e+00	ci left: 1.890421e-06	ci right 6.390718e-06	k: 12	n:3280000
Cons ci ratio: 5.843550e-01	ci left: 9.747110e-06	ci right 1.800848e-05	k: 44	n:3280000
KS ci ratio: 7.356452e-02	ci left: 8.331149e-04	ci right 8.970399e-04	k: 2836	n:3280000
SLC2A6   3280000 perm   4393 sec   (747 perm/sec)   p_kst 8.646341e-04   p_cons 1.341463e-05   p_joint 3.658537e-06

Joint ci ratio: 1.087210e+00	ci left: 1.884675e-06	ci right 6.371294e-06	k: 12	n:3290000
Cons ci ratio: 5.843550e-01	ci left: 9.717484e-06	ci right 1.795374e-05	k: 44	n:3290000
KS ci ratio: 7.342229e-02	ci left: 8.338647e-04	ci right 8.977182e-04	k: 2847	n:3290000
SLC2A6   3290000 perm   4418 sec   (745 perm/sec)   p_kst 8.653495e-04   p_cons 1.337386e-05   p_joint 3.647416e-06

Joint ci ratio: 1.087210e+00	ci left: 1.878964e-06	ci right 6.351987e-06	k: 12	n:3300000
Cons ci ratio: 5.843550e-01	ci left: 9.688037e-06	ci right 1.789934e-05	k: 44	n:3300000
KS ci ratio: 7.326806e-02	ci left: 8.349075e-04	ci right 8.987008e-04	k: 2859	n:3300000
SLC2A6   3300000 perm   4444 sec   (743 perm/sec)   p_kst 8.663636e-04   p_cons 1.333333e-05   p_joint 3.636364e-06

Joint ci ratio: 1.087210e+00	ci left: 1.873287e-06	ci right 6.332797e-06	k: 12	n:3310000
Cons ci ratio: 5.843550e-01	ci left: 9.658768e-06	ci right 1.784526e-05	k: 44	n:3310000
KS ci ratio: 7.317858e-02	ci left: 8.344612e-04	ci right 8.981393e-04	k: 2866	n:3310000
SLC2A6   3310000 perm   4469 sec   (741 perm/sec)   p_kst 8.658610e-04   p_cons 1.329305e-05   p_joint 3.625378e-06

Joint ci ratio: 1.087210e+00	ci left: 1.867644e-06	ci right 6.313722e-06	k: 12	n:3320000
Cons ci ratio: 5.843550e-01	ci left: 9.629675e-06	ci right 1.779151e-05	k: 44	n:3320000
KS ci ratio: 7.308943e-02	ci left: 8.340176e-04	ci right 8.975810e-04	k: 2873	n:3320000
SLC2A6   3320000 perm   4495 sec   (739 perm/sec)   p_kst 8.653614e-04   p_cons 1.325301e-05   p_joint 3.614458e-06

Joint ci ratio: 1.087210e+00	ci left: 1.862036e-06	ci right 6.294762e-06	k: 12	n:3330000
Cons ci ratio: 5.843551e-01	ci left: 9.600757e-06	ci right 1.773808e-05	k: 44	n:3330000
KS ci ratio: 7.296259e-02	ci left: 8.344612e-04	ci right 8.979434e-04	k: 2883	n:3330000
SLC2A6   3330000 perm   4520 sec   (737 perm/sec)   p_kst 8.657658e-04   p_cons 1.321321e-05   p_joint 3.603604e-06

Joint ci ratio: 1.087210e+00	ci left: 1.856461e-06	ci right 6.275915e-06	k: 12	n:3340000
Cons ci ratio: 5.843551e-01	ci left: 9.572012e-06	ci right 1.768497e-05	k: 44	n:3340000
KS ci ratio: 7.284900e-02	ci left: 8.346084e-04	ci right 8.979987e-04	k: 2892	n:3340000
SLC2A6   3340000 perm   4545 sec   (735 perm/sec)   p_kst 8.658683e-04   p_cons 1.317365e-05   p_joint 3.592814e-06

Joint ci ratio: 1.087210e+00	ci left: 1.850919e-06	ci right 6.257181e-06	k: 12	n:3350000
Cons ci ratio: 5.843551e-01	ci left: 9.543439e-06	ci right 1.763218e-05	k: 44	n:3350000
KS ci ratio: 7.274850e-02	ci left: 8.344616e-04	ci right 8.977496e-04	k: 2900	n:3350000
SLC2A6   3350000 perm   4571 sec   (733 perm/sec)   p_kst 8.656716e-04   p_cons 1.313433e-05   p_joint 3.582090e-06

Joint ci ratio: 1.087210e+00	ci left: 1.845411e-06	ci right 6.238559e-06	k: 12	n:3360000
Cons ci ratio: 5.843551e-01	ci left: 9.515036e-06	ci right 1.757971e-05	k: 44	n:3360000
KS ci ratio: 7.266090e-02	ci left: 8.340235e-04	ci right 8.971989e-04	k: 2907	n:3360000
SLC2A6   3360000 perm   4596 sec   (731 perm/sec)   p_kst 8.651786e-04   p_cons 1.309524e-05   p_joint 3.571429e-06

Joint ci ratio: 1.087210e+00	ci left: 1.839935e-06	ci right 6.220047e-06	k: 12	n:3370000
Cons ci ratio: 5.843551e-01	ci left: 9.486801e-06	ci right 1.752754e-05	k: 44	n:3370000
KS ci ratio: 7.259856e-02	ci left: 8.330054e-04	ci right 8.960473e-04	k: 2912	n:3370000
SLC2A6   3370000 perm   4623 sec   (729 perm/sec)   p_kst 8.640950e-04   p_cons 1.305638e-05   p_joint 3.560831e-06

Joint ci ratio: 1.087210e+00	ci left: 1.834491e-06	ci right 6.201644e-06	k: 12	n:3380000
Cons ci ratio: 5.843551e-01	ci left: 9.458734e-06	ci right 1.747568e-05	k: 44	n:3380000
KS ci ratio: 7.244945e-02	ci left: 8.340268e-04	ci right 8.970109e-04	k: 2924	n:3380000
SLC2A6   3380000 perm   4648 sec   (727 perm/sec)   p_kst 8.650888e-04   p_cons 1.301775e-05   p_joint 3.550296e-06

Joint ci ratio: 1.087210e+00	ci left: 1.829079e-06	ci right 6.183350e-06	k: 12	n:3390000
Cons ci ratio: 5.843551e-01	ci left: 9.430832e-06	ci right 1.742413e-05	k: 44	n:3390000
KS ci ratio: 7.232590e-02	ci left: 8.344630e-04	ci right 8.973681e-04	k: 2934	n:3390000
SLC2A6   3390000 perm   4674 sec   (725 perm/sec)   p_kst 8.654867e-04   p_cons 1.297935e-05   p_joint 3.539823e-06

Joint ci ratio: 1.047662e+00	ci left: 2.035870e-06	ci right 6.538343e-06	k: 13	n:3400000
Cons ci ratio: 5.779685e-01	ci left: 9.653930e-06	ci right 1.770983e-05	k: 45	n:3400000
KS ci ratio: 7.221526e-02	ci left: 8.346079e-04	ci right 8.974236e-04	k: 2943	n:3400000
SLC2A6   3400000 perm   4701 sec   (723 perm/sec)   p_kst 8.655882e-04   p_cons 1.323529e-05   p_joint 3.823529e-06

Joint ci ratio: 1.047662e+00	ci left: 2.029900e-06	ci right 6.519169e-06	k: 13	n:3410000
Cons ci ratio: 5.779685e-01	ci left: 9.625620e-06	ci right 1.765789e-05	k: 45	n:3410000
KS ci ratio: 7.216630e-02	ci left: 8.333122e-04	ci right 8.959861e-04	k: 2947	n:3410000
SLC2A6   3410000 perm   4727 sec   (721 perm/sec)   p_kst 8.642229e-04   p_cons 1.319648e-05   p_joint 3.812317e-06

Joint ci ratio: 1.047662e+00	ci left: 2.023964e-06	ci right 6.500107e-06	k: 13	n:3420000
Cons ci ratio: 5.779685e-01	ci left: 9.597474e-06	ci right 1.760626e-05	k: 45	n:3420000
KS ci ratio: 7.206859e-02	ci left: 8.331726e-04	ci right 8.957476e-04	k: 2955	n:3420000
SLC2A6   3420000 perm   4753 sec   (720 perm/sec)   p_kst 8.640351e-04   p_cons 1.315789e-05   p_joint 3.801170e-06

Joint ci ratio: 1.047662e+00	ci left: 2.018063e-06	ci right 6.481156e-06	k: 13	n:3430000
Cons ci ratio: 5.779685e-01	ci left: 9.569493e-06	ci right 1.755493e-05	k: 45	n:3430000
KS ci ratio: 7.197127e-02	ci left: 8.330339e-04	ci right 8.955105e-04	k: 2963	n:3430000
SLC2A6   3430000 perm   4780 sec   (718 perm/sec)   p_kst 8.638484e-04   p_cons 1.311953e-05   p_joint 3.790087e-06

Joint ci ratio: 1.047662e+00	ci left: 2.012197e-06	ci right 6.462316e-06	k: 13	n:3440000
Cons ci ratio: 5.779685e-01	ci left: 9.541675e-06	ci right 1.750390e-05	k: 45	n:3440000
KS ci ratio: 7.186225e-02	ci left: 8.331815e-04	ci right 8.955706e-04	k: 2972	n:3440000
SLC2A6   3440000 perm   4806 sec   (716 perm/sec)   p_kst 8.639535e-04   p_cons 1.308140e-05   p_joint 3.779070e-06

Joint ci ratio: 1.047662e+00	ci left: 2.006365e-06	ci right 6.443584e-06	k: 13	n:3450000
Cons ci ratio: 5.779685e-01	ci left: 9.514018e-06	ci right 1.745316e-05	k: 45	n:3450000
KS ci ratio: 7.177781e-02	ci left: 8.327591e-04	ci right 8.950401e-04	k: 2979	n:3450000
SLC2A6   3450000 perm   4833 sec   (714 perm/sec)   p_kst 8.634783e-04   p_cons 1.304348e-05   p_joint 3.768116e-06

Joint ci ratio: 1.047662e+00	ci left: 2.000566e-06	ci right 6.424961e-06	k: 13	n:3460000
Cons ci ratio: 5.779685e-01	ci left: 9.486521e-06	ci right 1.740272e-05	k: 45	n:3460000
KS ci ratio: 7.164568e-02	ci left: 8.334744e-04	ci right 8.956895e-04	k: 2990	n:3460000
SLC2A6   3460000 perm   4859 sec   (712 perm/sec)   p_kst 8.641618e-04   p_cons 1.300578e-05   p_joint 3.757225e-06

Joint ci ratio: 1.047662e+00	ci left: 1.994800e-06	ci right 6.406446e-06	k: 13	n:3470000
Cons ci ratio: 5.779686e-01	ci left: 9.459182e-06	ci right 1.735257e-05	k: 45	n:3470000
KS ci ratio: 7.158591e-02	ci left: 8.324876e-04	ci right 8.945750e-04	k: 2995	n:3470000
SLC2A6   3470000 perm   4886 sec   (710 perm/sec)   p_kst 8.631124e-04   p_cons 1.296830e-05   p_joint 3.746398e-06

Joint ci ratio: 1.047662e+00	ci left: 1.989068e-06	ci right 6.388036e-06	k: 13	n:3480000
Cons ci ratio: 5.779686e-01	ci left: 9.432000e-06	ci right 1.730270e-05	k: 45	n:3480000
KS ci ratio: 7.145483e-02	ci left: 8.331998e-04	ci right 8.952218e-04	k: 3006	n:3480000
SLC2A6   3480000 perm   4913 sec   (708 perm/sec)   p_kst 8.637931e-04   p_cons 1.293103e-05   p_joint 3.735632e-06

Joint ci ratio: 1.047662e+00	ci left: 1.983369e-06	ci right 6.369733e-06	k: 13	n:3490000
Cons ci ratio: 5.779686e-01	ci left: 9.404975e-06	ci right 1.725313e-05	k: 45	n:3490000
KS ci ratio: 7.128901e-02	ci left: 8.347523e-04	ci right 8.967397e-04	k: 3020	n:3490000
SLC2A6   3490000 perm   4939 sec   (707 perm/sec)   p_kst 8.653295e-04   p_cons 1.289398e-05   p_joint 3.724928e-06

Joint ci ratio: 1.047662e+00	ci left: 1.977702e-06	ci right 6.351533e-06	k: 13	n:3500000
Cons ci ratio: 5.717868e-01	ci left: 9.622239e-06	ci right 1.753069e-05	k: 46	n:3500000
KS ci ratio: 7.120658e-02	ci left: 8.343317e-04	ci right 8.962132e-04	k: 3027	n:3500000
SLC2A6   3500000 perm   4966 sec   (705 perm/sec)   p_kst 8.648571e-04   p_cons 1.314286e-05   p_joint 3.714286e-06

Joint ci ratio: 1.047662e+00	ci left: 1.972068e-06	ci right 6.333438e-06	k: 13	n:3510000
Cons ci ratio: 5.717869e-01	ci left: 9.594825e-06	ci right 1.748075e-05	k: 46	n:3510000
KS ci ratio: 7.112443e-02	ci left: 8.339134e-04	ci right 8.956897e-04	k: 3034	n:3510000
SLC2A6   3510000 perm   4992 sec   (703 perm/sec)   p_kst 8.643875e-04   p_cons 1.310541e-05   p_joint 3.703704e-06

Joint ci ratio: 1.047662e+00	ci left: 1.966465e-06	ci right 6.315445e-06	k: 13	n:3520000
Cons ci ratio: 5.717869e-01	ci left: 9.567567e-06	ci right 1.743109e-05	k: 46	n:3520000
KS ci ratio: 7.098421e-02	ci left: 8.348929e-04	ci right 8.966148e-04	k: 3046	n:3520000
SLC2A6   3520000 perm   5019 sec   (701 perm/sec)   p_kst 8.653409e-04   p_cons 1.306818e-05   p_joint 3.693182e-06

Joint ci ratio: 1.047662e+00	ci left: 1.960894e-06	ci right 6.297554e-06	k: 13	n:3530000
Cons ci ratio: 5.717869e-01	ci left: 9.540463e-06	ci right 1.738171e-05	k: 46	n:3530000
KS ci ratio: 7.089121e-02	ci left: 8.347539e-04	ci right 8.963813e-04	k: 3054	n:3530000
SLC2A6   3530000 perm   5046 sec   (700 perm/sec)   p_kst 8.651558e-04   p_cons 1.303116e-05   p_joint 3.682720e-06

Joint ci ratio: 1.047662e+00	ci left: 1.955355e-06	ci right 6.279765e-06	k: 13	n:3540000
Cons ci ratio: 5.717869e-01	ci left: 9.513513e-06	ci right 1.733260e-05	k: 46	n:3540000
KS ci ratio: 7.082172e-02	ci left: 8.340607e-04	ci right 8.955741e-04	k: 3060	n:3540000
SLC2A6   3540000 perm   5073 sec   (698 perm/sec)   p_kst 8.644068e-04   p_cons 1.299435e-05   p_joint 3.672316e-06

Joint ci ratio: 1.047662e+00	ci left: 1.949847e-06	ci right 6.262075e-06	k: 13	n:3550000
Cons ci ratio: 5.717869e-01	ci left: 9.486714e-06	ci right 1.728378e-05	k: 46	n:3550000
KS ci ratio: 7.068328e-02	ci left: 8.350317e-04	ci right 8.964914e-04	k: 3072	n:3550000
SLC2A6   3550000 perm   5100 sec   (696 perm/sec)   p_kst 8.653521e-04   p_cons 1.295775e-05   p_joint 3.661972e-06

Joint ci ratio: 1.047662e+00	ci left: 1.944370e-06	ci right 6.244485e-06	k: 13	n:3560000
Cons ci ratio: 5.717869e-01	ci left: 9.460066e-06	ci right 1.723523e-05	k: 46	n:3560000
KS ci ratio: 7.059146e-02	ci left: 8.348936e-04	ci right 8.962600e-04	k: 3080	n:3560000
SLC2A6   3560000 perm   5128 sec   (694 perm/sec)   p_kst 8.651685e-04   p_cons 1.292135e-05   p_joint 3.651685e-06

Joint ci ratio: 1.047662e+00	ci left: 1.938924e-06	ci right 6.226994e-06	k: 13	n:3570000
Cons ci ratio: 5.717869e-01	ci left: 9.433567e-06	ci right 1.718695e-05	k: 46	n:3570000
KS ci ratio: 7.053428e-02	ci left: 8.339308e-04	ci right 8.951748e-04	k: 3085	n:3570000
SLC2A6   3570000 perm   5155 sec   (693 perm/sec)   p_kst 8.641457e-04   p_cons 1.288515e-05   p_joint 3.641457e-06

Joint ci ratio: 1.047662e+00	ci left: 1.933508e-06	ci right 6.209600e-06	k: 13	n:3580000
Cons ci ratio: 5.717869e-01	ci left: 9.407216e-06	ci right 1.713894e-05	k: 46	n:3580000
KS ci ratio: 7.045444e-02	ci left: 8.335222e-04	ci right 8.946640e-04	k: 3092	n:3580000
SLC2A6   3580000 perm   5183 sec   (691 perm/sec)   p_kst 8.636872e-04   p_cons 1.284916e-05   p_joint 3.631285e-06

Joint ci ratio: 1.047662e+00	ci left: 1.928122e-06	ci right 6.192303e-06	k: 13	n:3590000
Cons ci ratio: 5.717869e-01	ci left: 9.381012e-06	ci right 1.709120e-05	k: 46	n:3590000
KS ci ratio: 7.030680e-02	ci left: 8.347579e-04	ci right 8.958568e-04	k: 3105	n:3590000
SLC2A6   3590000 perm   5210 sec   (689 perm/sec)   p_kst 8.649025e-04   p_cons 1.281337e-05   p_joint 3.621170e-06

Joint ci ratio: 1.047662e+00	ci left: 1.922766e-06	ci right 6.175102e-06	k: 13	n:3600000
Cons ci ratio: 5.657994e-01	ci left: 9.592746e-06	ci right 1.736108e-05	k: 47	n:3600000
KS ci ratio: 7.020516e-02	ci left: 8.348952e-04	ci right 8.959122e-04	k: 3114	n:3600000
SLC2A6   3600000 perm   5237 sec   (687 perm/sec)   p_kst 8.650000e-04   p_cons 1.305556e-05   p_joint 3.611111e-06

Joint ci ratio: 1.047662e+00	ci left: 1.917440e-06	ci right 6.157997e-06	k: 13	n:3610000
Cons ci ratio: 5.599961e-01	ci left: 9.803731e-06	ci right 1.762906e-05	k: 48	n:3610000
KS ci ratio: 7.008150e-02	ci left: 8.355761e-04	ci right 8.965310e-04	k: 3125	n:3610000
SLC2A6   3610000 perm   5264 sec   (686 perm/sec)   p_kst 8.656510e-04   p_cons 1.329640e-05   p_joint 3.601108e-06

Joint ci ratio: 1.047662e+00	ci left: 1.912143e-06	ci right 6.140986e-06	k: 13	n:3620000
Cons ci ratio: 5.599961e-01	ci left: 9.776649e-06	ci right 1.758036e-05	k: 48	n:3620000
KS ci ratio: 6.995850e-02	ci left: 8.362534e-04	ci right 8.971462e-04	k: 3136	n:3620000
SLC2A6   3620000 perm   5292 sec   (684 perm/sec)   p_kst 8.662983e-04   p_cons 1.325967e-05   p_joint 3.591160e-06

Joint ci ratio: 1.047662e+00	ci left: 1.906875e-06	ci right 6.124068e-06	k: 13	n:3630000
Cons ci ratio: 5.599961e-01	ci left: 9.749716e-06	ci right 1.753193e-05	k: 48	n:3630000
KS ci ratio: 6.982504e-02	ci left: 8.371977e-04	ci right 8.980383e-04	k: 3148	n:3630000
SLC2A6   3630000 perm   5320 sec   (682 perm/sec)   p_kst 8.672176e-04   p_cons 1.322314e-05   p_joint 3.581267e-06

Joint ci ratio: 1.047662e+00	ci left: 1.901637e-06	ci right 6.107244e-06	k: 13	n:3640000
Cons ci ratio: 5.599962e-01	ci left: 9.722931e-06	ci right 1.748376e-05	k: 48	n:3640000
KS ci ratio: 6.978078e-02	ci left: 8.359774e-04	ci right 8.966893e-04	k: 3152	n:3640000
SLC2A6   3640000 perm   5347 sec   (681 perm/sec)   p_kst 8.659341e-04   p_cons 1.318681e-05   p_joint 3.571429e-06

Joint ci ratio: 1.047662e+00	ci left: 1.896427e-06	ci right 6.090512e-06	k: 13	n:3650000
Cons ci ratio: 5.599962e-01	ci left: 9.696292e-06	ci right 1.743586e-05	k: 48	n:3650000
KS ci ratio: 6.967038e-02	ci left: 8.363790e-04	ci right 8.970201e-04	k: 3162	n:3650000
SLC2A6   3650000 perm   5376 sec   (679 perm/sec)   p_kst 8.663014e-04   p_cons 1.315068e-05   p_joint 3.561644e-06

Joint ci ratio: 1.047662e+00	ci left: 1.891245e-06	ci right 6.073871e-06	k: 13	n:3660000
Cons ci ratio: 5.599962e-01	ci left: 9.669800e-06	ci right 1.738822e-05	k: 48	n:3660000
KS ci ratio: 6.959343e-02	ci left: 8.359731e-04	ci right 8.965151e-04	k: 3169	n:3660000
SLC2A6   3660000 perm   5403 sec   (677 perm/sec)   p_kst 8.658470e-04   p_cons 1.311475e-05   p_joint 3.551913e-06

Joint ci ratio: 1.047662e+00	ci left: 1.886092e-06	ci right 6.057321e-06	k: 13	n:3670000
Cons ci ratio: 5.599962e-01	ci left: 9.643451e-06	ci right 1.734084e-05	k: 48	n:3670000
KS ci ratio: 6.950578e-02	ci left: 8.358372e-04	ci right 8.962900e-04	k: 3177	n:3670000
SLC2A6   3670000 perm   5432 sec   (676 perm/sec)   p_kst 8.656676e-04   p_cons 1.307902e-05   p_joint 3.542234e-06

Joint ci ratio: 1.012137e+00	ci left: 2.079874e-06	ci right 6.383041e-06	k: 14	n:3680000
Cons ci ratio: 5.543679e-01	ci left: 9.850687e-06	ci right 1.760339e-05	k: 49	n:3680000
KS ci ratio: 6.944029e-02	ci left: 8.351680e-04	ci right 8.955132e-04	k: 3183	n:3680000
SLC2A6   3680000 perm   5460 sec   (674 perm/sec)   p_kst 8.649457e-04   p_cons 1.331522e-05   p_joint 3.804348e-06

Joint ci ratio: 1.012137e+00	ci left: 2.074237e-06	ci right 6.365743e-06	k: 14	n:3690000
Cons ci ratio: 5.543679e-01	ci left: 9.823991e-06	ci right 1.755568e-05	k: 49	n:3690000
KS ci ratio: 6.936410e-02	ci left: 8.347687e-04	ci right 8.950162e-04	k: 3190	n:3690000
SLC2A6   3690000 perm   5488 sec   (672 perm/sec)   p_kst 8.644986e-04   p_cons 1.327913e-05   p_joint 3.794038e-06

Joint ci ratio: 1.012137e+00	ci left: 2.068631e-06	ci right 6.348538e-06	k: 14	n:3700000
Cons ci ratio: 5.543679e-01	ci left: 9.797440e-06	ci right 1.750823e-05	k: 49	n:3700000
KS ci ratio: 6.929900e-02	ci left: 8.341061e-04	ci right 8.942470e-04	k: 3196	n:3700000
SLC2A6   3700000 perm   5516 sec   (671 perm/sec)   p_kst 8.637838e-04   p_cons 1.324324e-05   p_joint 3.783784e-06

Joint ci ratio: 9.799978e-01	ci left: 2.262909e-06	ci right 6.668514e-06	k: 15	n:3710000
Cons ci ratio: 5.489059e-01	ci left: 1.000297e-05	ci right 1.776782e-05	k: 50	n:3710000
KS ci ratio: 6.923409e-02	ci left: 8.334471e-04	ci right 8.934819e-04	k: 3202	n:3710000
SLC2A6   3710000 perm   5545 sec   (669 perm/sec)   p_kst 8.630728e-04   p_cons 1.347709e-05   p_joint 4.043127e-06

Joint ci ratio: 9.799978e-01	ci left: 2.256826e-06	ci right 6.650588e-06	k: 15	n:3720000
Cons ci ratio: 5.489060e-01	ci left: 9.976081e-06	ci right 1.772006e-05	k: 50	n:3720000
KS ci ratio: 6.916936e-02	ci left: 8.327916e-04	ci right 8.927209e-04	k: 3208	n:3720000
SLC2A6   3720000 perm   5574 sec   (667 perm/sec)   p_kst 8.623656e-04   p_cons 1.344086e-05   p_joint 4.032258e-06

Joint ci ratio: 9.799978e-01	ci left: 2.250775e-06	ci right 6.632758e-06	k: 15	n:3730000
Cons ci ratio: 5.489060e-01	ci left: 9.949336e-06	ci right 1.767255e-05	k: 50	n:3730000
KS ci ratio: 6.910481e-02	ci left: 8.321397e-04	ci right 8.919639e-04	k: 3214	n:3730000
SLC2A6   3730000 perm   5602 sec   (666 perm/sec)   p_kst 8.616622e-04   p_cons 1.340483e-05   p_joint 4.021448e-06

Joint ci ratio: 9.799978e-01	ci left: 2.244757e-06	ci right 6.615023e-06	k: 15	n:3740000
Cons ci ratio: 5.489060e-01	ci left: 9.922733e-06	ci right 1.762530e-05	k: 50	n:3740000
KS ci ratio: 6.900828e-02	ci left: 8.322796e-04	ci right 8.920270e-04	k: 3223	n:3740000
SLC2A6   3740000 perm   5631 sec   (664 perm/sec)   p_kst 8.617647e-04   p_cons 1.336898e-05   p_joint 4.010695e-06

Joint ci ratio: 9.799978e-01	ci left: 2.238771e-06	ci right 6.597383e-06	k: 15	n:3750000
Cons ci ratio: 5.489060e-01	ci left: 9.896273e-06	ci right 1.757830e-05	k: 50	n:3750000
KS ci ratio: 6.889084e-02	ci left: 8.329429e-04	ci right 8.926321e-04	k: 3234	n:3750000
SLC2A6   3750000 perm   5659 sec   (663 perm/sec)   p_kst 8.624000e-04   p_cons 1.333333e-05   p_joint 4.000000e-06

Joint ci ratio: 9.799978e-01	ci left: 2.232817e-06	ci right 6.579837e-06	k: 15	n:3760000
Cons ci ratio: 5.489060e-01	ci left: 9.869953e-06	ci right 1.753155e-05	k: 50	n:3760000
KS ci ratio: 6.883769e-02	ci left: 8.320345e-04	ci right 8.916108e-04	k: 3239	n:3760000
SLC2A6   3760000 perm   5688 sec   (661 perm/sec)   p_kst 8.614362e-04   p_cons 1.329787e-05   p_joint 3.989362e-06

Joint ci ratio: 9.799978e-01	ci left: 2.226895e-06	ci right 6.562384e-06	k: 15	n:3770000
Cons ci ratio: 5.436024e-01	ci left: 1.007239e-05	ci right 1.778659e-05	k: 51	n:3770000
KS ci ratio: 6.875287e-02	ci left: 8.319131e-04	ci right 8.914043e-04	k: 3247	n:3770000
SLC2A6   3770000 perm   5716 sec   (660 perm/sec)   p_kst 8.612732e-04   p_cons 1.352785e-05   p_joint 3.978780e-06

Joint ci ratio: 9.799978e-01	ci left: 2.221003e-06	ci right 6.545023e-06	k: 15	n:3780000
Cons ci ratio: 5.384496e-01	ci left: 1.027411e-05	ci right 1.803993e-05	k: 52	n:3780000
KS ci ratio: 6.865781e-02	ci left: 8.320523e-04	ci right 8.914679e-04	k: 3256	n:3780000
SLC2A6   3780000 perm   5745 sec   (658 perm/sec)   p_kst 8.613757e-04   p_cons 1.375661e-05   p_joint 3.968254e-06

Joint ci ratio: 9.799978e-01	ci left: 2.215143e-06	ci right 6.527754e-06	k: 15	n:3790000
Cons ci ratio: 5.384496e-01	ci left: 1.024701e-05	ci right 1.799233e-05	k: 52	n:3790000
KS ci ratio: 6.857365e-02	ci left: 8.319315e-04	ci right 8.912628e-04	k: 3264	n:3790000
SLC2A6   3790000 perm   5773 sec   (657 perm/sec)   p_kst 8.612137e-04   p_cons 1.372032e-05   p_joint 3.957784e-06

Joint ci ratio: 9.799978e-01	ci left: 2.209314e-06	ci right 6.510576e-06	k: 15	n:3800000
Cons ci ratio: 5.384496e-01	ci left: 1.022004e-05	ci right 1.794498e-05	k: 52	n:3800000
KS ci ratio: 6.852124e-02	ci left: 8.310354e-04	ci right 8.902557e-04	k: 3269	n:3800000
SLC2A6   3800000 perm   5802 sec   (655 perm/sec)   p_kst 8.602632e-04   p_cons 1.368421e-05   p_joint 3.947368e-06

Joint ci ratio: 9.799978e-01	ci left: 2.203515e-06	ci right 6.493487e-06	k: 15	n:3810000
Cons ci ratio: 5.384496e-01	ci left: 1.019322e-05	ci right 1.789788e-05	k: 52	n:3810000
KS ci ratio: 6.841669e-02	ci left: 8.314340e-04	ci right 8.905887e-04	k: 3279	n:3810000
SLC2A6   3810000 perm   5831 sec   (653 perm/sec)   p_kst 8.606299e-04   p_cons 1.364829e-05   p_joint 3.937008e-06

Joint ci ratio: 9.799978e-01	ci left: 2.197747e-06	ci right 6.476489e-06	k: 15	n:3820000
Cons ci ratio: 5.384496e-01	ci left: 1.016653e-05	ci right 1.785103e-05	k: 52	n:3820000
KS ci ratio: 6.832302e-02	ci left: 8.315732e-04	ci right 8.906536e-04	k: 3288	n:3820000
SLC2A6   3820000 perm   5860 sec   (652 perm/sec)   p_kst 8.607330e-04   p_cons 1.361257e-05   p_joint 3.926702e-06

Joint ci ratio: 9.799978e-01	ci left: 2.192008e-06	ci right 6.459579e-06	k: 15	n:3830000
Cons ci ratio: 5.384496e-01	ci left: 1.013999e-05	ci right 1.780442e-05	k: 52	n:3830000
KS ci ratio: 6.820903e-02	ci left: 8.322250e-04	ci right 8.912492e-04	k: 3299	n:3830000
SLC2A6   3830000 perm   5890 sec   (650 perm/sec)   p_kst 8.613577e-04   p_cons 1.357702e-05   p_joint 3.916449e-06

Joint ci ratio: 9.799978e-01	ci left: 2.186300e-06	ci right 6.442757e-06	k: 15	n:3840000
Cons ci ratio: 5.384496e-01	ci left: 1.011358e-05	ci right 1.775806e-05	k: 52	n:3840000
KS ci ratio: 6.810590e-02	ci left: 8.326176e-04	ci right 8.915768e-04	k: 3309	n:3840000
SLC2A6   3840000 perm   5919 sec   (649 perm/sec)   p_kst 8.617187e-04   p_cons 1.354167e-05   p_joint 3.906250e-06

Joint ci ratio: 9.799978e-01	ci left: 2.180621e-06	ci right 6.426023e-06	k: 15	n:3850000
Cons ci ratio: 5.384496e-01	ci left: 1.008731e-05	ci right 1.771193e-05	k: 52	n:3850000
KS ci ratio: 6.798275e-02	ci left: 8.335188e-04	ci right 8.924309e-04	k: 3321	n:3850000
SLC2A6   3850000 perm   5949 sec   (647 perm/sec)   p_kst 8.625974e-04   p_cons 1.350649e-05   p_joint 3.896104e-06

Joint ci ratio: 9.799978e-01	ci left: 2.174972e-06	ci right 6.409375e-06	k: 15	n:3860000
Cons ci ratio: 5.384496e-01	ci left: 1.006118e-05	ci right 1.766605e-05	k: 52	n:3860000
KS ci ratio: 6.789085e-02	ci left: 8.336514e-04	ci right 8.924901e-04	k: 3330	n:3860000
SLC2A6   3860000 perm   5978 sec   (646 perm/sec)   p_kst 8.626943e-04   p_cons 1.347150e-05   p_joint 3.886010e-06

Joint ci ratio: 9.799978e-01	ci left: 2.169352e-06	ci right 6.392813e-06	k: 15	n:3870000
Cons ci ratio: 5.384497e-01	ci left: 1.003518e-05	ci right 1.762040e-05	k: 52	n:3870000
KS ci ratio: 6.774858e-02	ci left: 8.350535e-04	ci right 8.938628e-04	k: 3344	n:3870000
SLC2A6   3870000 perm   6007 sec   (644 perm/sec)   p_kst 8.640827e-04   p_cons 1.343669e-05   p_joint 3.875969e-06

Joint ci ratio: 9.799979e-01	ci left: 2.163761e-06	ci right 6.376337e-06	k: 15	n:3880000
Cons ci ratio: 5.384497e-01	ci left: 1.000932e-05	ci right 1.757498e-05	k: 52	n:3880000
KS ci ratio: 6.762735e-02	ci left: 8.359418e-04	ci right 8.947041e-04	k: 3356	n:3880000
SLC2A6   3880000 perm   6037 sec   (643 perm/sec)   p_kst 8.649485e-04   p_cons 1.340206e-05   p_joint 3.865979e-06

Joint ci ratio: 9.799979e-01	ci left: 2.158199e-06	ci right 6.359945e-06	k: 15	n:3890000
Cons ci ratio: 5.384497e-01	ci left: 9.983586e-06	ci right 1.752980e-05	k: 52	n:3890000
KS ci ratio: 6.750677e-02	ci left: 8.368256e-04	ci right 8.955411e-04	k: 3368	n:3890000
SLC2A6   3890000 perm   6066 sec   (641 perm/sec)   p_kst 8.658098e-04   p_cons 1.336761e-05   p_joint 3.856041e-06

Joint ci ratio: 9.799979e-01	ci left: 2.152665e-06	ci right 6.343638e-06	k: 15	n:3900000
Cons ci ratio: 5.384497e-01	ci left: 9.957987e-06	ci right 1.748486e-05	k: 52	n:3900000
KS ci ratio: 6.739682e-02	ci left: 8.374528e-04	ci right 8.961129e-04	k: 3379	n:3900000
SLC2A6   3900000 perm   6096 sec   (640 perm/sec)   p_kst 8.664103e-04   p_cons 1.333333e-05   p_joint 3.846154e-06

Joint ci ratio: 9.799979e-01	ci left: 2.147159e-06	ci right 6.327414e-06	k: 15	n:3910000
Cons ci ratio: 5.384497e-01	ci left: 9.932519e-06	ci right 1.744014e-05	k: 52	n:3910000
KS ci ratio: 6.728739e-02	ci left: 8.380769e-04	ci right 8.966817e-04	k: 3390	n:3910000
SLC2A6   3910000 perm   6126 sec   (638 perm/sec)   p_kst 8.670077e-04   p_cons 1.329923e-05   p_joint 3.836317e-06

Joint ci ratio: 9.799979e-01	ci left: 2.141682e-06	ci right 6.311272e-06	k: 15	n:3920000
Cons ci ratio: 5.384497e-01	ci left: 9.907180e-06	ci right 1.739565e-05	k: 52	n:3920000
KS ci ratio: 6.721807e-02	ci left: 8.376946e-04	ci right 8.962100e-04	k: 3397	n:3920000
SLC2A6   3920000 perm   6156 sec   (637 perm/sec)   p_kst 8.665816e-04   p_cons 1.326531e-05   p_joint 3.826531e-06

Joint ci ratio: 9.799979e-01	ci left: 2.136232e-06	ci right 6.295213e-06	k: 15	n:3930000
Cons ci ratio: 5.384497e-01	ci left: 9.881971e-06	ci right 1.735138e-05	k: 52	n:3930000
KS ci ratio: 6.707998e-02	ci left: 8.390657e-04	ci right 8.975517e-04	k: 3411	n:3930000
SLC2A6   3930000 perm   6186 sec   (635 perm/sec)   p_kst 8.679389e-04   p_cons 1.323155e-05   p_joint 3.816794e-06

Joint ci ratio: 9.799979e-01	ci left: 2.130810e-06	ci right 6.279236e-06	k: 15	n:3940000
Cons ci ratio: 5.384497e-01	ci left: 9.856890e-06	ci right 1.730735e-05	k: 52	n:3940000
KS ci ratio: 6.700148e-02	ci left: 8.389325e-04	ci right 8.973381e-04	k: 3419	n:3940000
SLC2A6   3940000 perm   6216 sec   (634 perm/sec)   p_kst 8.677665e-04   p_cons 1.319797e-05   p_joint 3.807107e-06

Joint ci ratio: 9.799979e-01	ci left: 2.125416e-06	ci right 6.263339e-06	k: 15	n:3950000
Cons ci ratio: 5.384497e-01	ci left: 9.831936e-06	ci right 1.726353e-05	k: 52	n:3950000
KS ci ratio: 6.683550e-02	ci left: 8.410404e-04	ci right 8.994421e-04	k: 3436	n:3950000
SLC2A6   3950000 perm   6246 sec   (632 perm/sec)   p_kst 8.698734e-04   p_cons 1.316456e-05   p_joint 3.797468e-06

Joint ci ratio: 9.799979e-01	ci left: 2.120049e-06	ci right 6.247522e-06	k: 15	n:3960000
Cons ci ratio: 5.384497e-01	ci left: 9.807108e-06	ci right 1.721993e-05	k: 52	n:3960000
KS ci ratio: 6.671910e-02	ci left: 8.418963e-04	ci right 9.002517e-04	k: 3448	n:3960000
SLC2A6   3960000 perm   6276 sec   (631 perm/sec)   p_kst 8.707071e-04   p_cons 1.313131e-05   p_joint 3.787879e-06

Joint ci ratio: 9.799979e-01	ci left: 2.114708e-06	ci right 6.231786e-06	k: 15	n:3970000
Cons ci ratio: 5.384497e-01	ci left: 9.782405e-06	ci right 1.717656e-05	k: 52	n:3970000
KS ci ratio: 6.664187e-02	ci left: 8.417571e-04	ci right 9.000327e-04	k: 3456	n:3970000
SLC2A6   3970000 perm   6306 sec   (630 perm/sec)   p_kst 8.705290e-04   p_cons 1.309824e-05   p_joint 3.778338e-06

Joint ci ratio: 9.799979e-01	ci left: 2.109395e-06	ci right 6.216128e-06	k: 15	n:3980000
Cons ci ratio: 5.384498e-01	ci left: 9.757826e-06	ci right 1.713340e-05	k: 52	n:3980000
KS ci ratio: 6.654568e-02	ci left: 8.421129e-04	ci right 9.003257e-04	k: 3466	n:3980000
SLC2A6   3980000 perm   6336 sec   (628 perm/sec)   p_kst 8.708543e-04   p_cons 1.306533e-05   p_joint 3.768844e-06

Joint ci ratio: 9.799979e-01	ci left: 2.104108e-06	ci right 6.200549e-06	k: 15	n:3990000
Cons ci ratio: 5.384498e-01	ci left: 9.733370e-06	ci right 1.709046e-05	k: 52	n:3990000
KS ci ratio: 6.648819e-02	ci left: 8.414811e-04	ci right 8.995981e-04	k: 3472	n:3990000
SLC2A6   3990000 perm   6366 sec   (627 perm/sec)   p_kst 8.701754e-04   p_cons 1.303258e-05   p_joint 3.759398e-06

Joint ci ratio: 9.799979e-01	ci left: 2.098848e-06	ci right 6.185047e-06	k: 15	n:4000000
Cons ci ratio: 5.384498e-01	ci left: 9.709037e-06	ci right 1.704774e-05	k: 52	n:4000000
KS ci ratio: 6.641175e-02	ci left: 8.413442e-04	ci right 8.993823e-04	k: 3480	n:4000000
SLC2A6   4000000 perm   6397 sec   (625 perm/sec)   p_kst 8.700000e-04   p_cons 1.300000e-05   p_joint 3.750000e-06

Joint ci ratio: 9.799979e-01	ci left: 2.093614e-06	ci right 6.169623e-06	k: 15	n:4010000
Cons ci ratio: 5.384498e-01	ci left: 9.684824e-06	ci right 1.700522e-05	k: 52	n:4010000
KS ci ratio: 6.636414e-02	ci left: 8.404722e-04	ci right 8.984070e-04	k: 3485	n:4010000
SLC2A6   4010000 perm   6427 sec   (624 perm/sec)   p_kst 8.690773e-04   p_cons 1.296758e-05   p_joint 3.740648e-06

Joint ci ratio: 9.799979e-01	ci left: 2.088406e-06	ci right 6.154276e-06	k: 15	n:4020000
Cons ci ratio: 5.384498e-01	ci left: 9.660733e-06	ci right 1.696292e-05	k: 52	n:4020000
KS ci ratio: 6.632614e-02	ci left: 8.393600e-04	ci right 8.971837e-04	k: 3489	n:4020000
SLC2A6   4020000 perm   6458 sec   (622 perm/sec)   p_kst 8.679104e-04   p_cons 1.293532e-05   p_joint 3.731343e-06

Joint ci ratio: 9.799979e-01	ci left: 2.083224e-06	ci right 6.139005e-06	k: 15	n:4030000
Cons ci ratio: 5.384498e-01	ci left: 9.636761e-06	ci right 1.692083e-05	k: 52	n:4030000
KS ci ratio: 6.619346e-02	ci left: 8.406936e-04	ci right 8.984890e-04	k: 3503	n:4030000
SLC2A6   4030000 perm   6488 sec   (621 perm/sec)   p_kst 8.692308e-04   p_cons 1.290323e-05   p_joint 3.722084e-06

Joint ci ratio: 9.799979e-01	ci left: 2.078067e-06	ci right 6.123809e-06	k: 15	n:4040000
Cons ci ratio: 5.384498e-01	ci left: 9.612907e-06	ci right 1.687895e-05	k: 52	n:4040000
KS ci ratio: 6.609920e-02	ci left: 8.410470e-04	ci right 8.987811e-04	k: 3513	n:4040000
SLC2A6   4040000 perm   6519 sec   (620 perm/sec)   p_kst 8.695545e-04   p_cons 1.287129e-05   p_joint 3.712871e-06

Joint ci ratio: 9.799979e-01	ci left: 2.072936e-06	ci right 6.108689e-06	k: 15	n:4050000
Cons ci ratio: 5.384498e-01	ci left: 9.589172e-06	ci right 1.683727e-05	k: 52	n:4050000
KS ci ratio: 6.602409e-02	ci left: 8.409130e-04	ci right 8.985699e-04	k: 3521	n:4050000
SLC2A6   4050000 perm   6550 sec   (618 perm/sec)   p_kst 8.693827e-04   p_cons 1.283951e-05   p_joint 3.703704e-06

Joint ci ratio: 9.799979e-01	ci left: 2.067831e-06	ci right 6.093643e-06	k: 15	n:4060000
Cons ci ratio: 5.384498e-01	ci left: 9.565553e-06	ci right 1.679580e-05	k: 52	n:4060000
KS ci ratio: 6.597730e-02	ci left: 8.400530e-04	ci right 8.976085e-04	k: 3526	n:4060000
SLC2A6   4060000 perm   6581 sec   (617 perm/sec)   p_kst 8.684729e-04   p_cons 1.280788e-05   p_joint 3.694581e-06

Joint ci ratio: 9.799980e-01	ci left: 2.062750e-06	ci right 6.078671e-06	k: 15	n:4070000
Cons ci ratio: 5.384498e-01	ci left: 9.542050e-06	ci right 1.675453e-05	k: 52	n:4070000
KS ci ratio: 6.589328e-02	ci left: 8.401638e-04	ci right 8.976508e-04	k: 3535	n:4070000
SLC2A6   4070000 perm   6611 sec   (616 perm/sec)   p_kst 8.685504e-04   p_cons 1.277641e-05   p_joint 3.685504e-06

Joint ci ratio: 9.799980e-01	ci left: 2.057694e-06	ci right 6.063772e-06	k: 15	n:4080000
Cons ci ratio: 5.384498e-01	ci left: 9.518663e-06	ci right 1.671347e-05	k: 52	n:4080000
KS ci ratio: 6.579101e-02	ci left: 8.407563e-04	ci right 8.981912e-04	k: 3546	n:4080000
SLC2A6   4080000 perm   6642 sec   (614 perm/sec)   p_kst 8.691176e-04   p_cons 1.274510e-05   p_joint 3.676471e-06

Joint ci ratio: 9.799980e-01	ci left: 2.052663e-06	ci right 6.048946e-06	k: 15	n:4090000
Cons ci ratio: 5.384499e-01	ci left: 9.495390e-06	ci right 1.667260e-05	k: 52	n:4090000
KS ci ratio: 6.571695e-02	ci left: 8.406245e-04	ci right 8.979832e-04	k: 3554	n:4090000
SLC2A6   4090000 perm   6672 sec   (613 perm/sec)   p_kst 8.689487e-04   p_cons 1.271394e-05   p_joint 3.667482e-06

Joint ci ratio: 9.799980e-01	ci left: 2.047657e-06	ci right 6.034193e-06	k: 15	n:4100000
Cons ci ratio: 5.384499e-01	ci left: 9.472230e-06	ci right 1.663194e-05	k: 52	n:4100000
KS ci ratio: 6.564314e-02	ci left: 8.404934e-04	ci right 8.977763e-04	k: 3562	n:4100000
SLC2A6   4100000 perm   6703 sec   (612 perm/sec)   p_kst 8.687805e-04   p_cons 1.268293e-05   p_joint 3.658537e-06

Joint ci ratio: 9.799980e-01	ci left: 2.042674e-06	ci right 6.019511e-06	k: 15	n:4110000
Cons ci ratio: 5.384499e-01	ci left: 9.449184e-06	ci right 1.659147e-05	k: 52	n:4110000
KS ci ratio: 6.556038e-02	ci left: 8.406022e-04	ci right 8.978176e-04	k: 3571	n:4110000
SLC2A6   4110000 perm   6734 sec   (610 perm/sec)   p_kst 8.688564e-04   p_cons 1.265207e-05   p_joint 3.649635e-06

Joint ci ratio: 9.799980e-01	ci left: 2.037716e-06	ci right 6.004900e-06	k: 15	n:4120000
Cons ci ratio: 5.384499e-01	ci left: 9.426249e-06	ci right 1.655120e-05	k: 52	n:4120000
KS ci ratio: 6.551458e-02	ci left: 8.397556e-04	ci right 8.968719e-04	k: 3576	n:4120000
SLC2A6   4120000 perm   6766 sec   (609 perm/sec)   p_kst 8.679612e-04   p_cons 1.262136e-05   p_joint 3.640777e-06

Joint ci ratio: 9.799980e-01	ci left: 2.032783e-06	ci right 5.990361e-06	k: 15	n:4130000
Cons ci ratio: 5.384499e-01	ci left: 9.403425e-06	ci right 1.651113e-05	k: 52	n:4130000
KS ci ratio: 6.545058e-02	ci left: 8.393895e-04	ci right 8.964230e-04	k: 3583	n:4130000
SLC2A6   4130000 perm   6797 sec   (608 perm/sec)   p_kst 8.675545e-04   p_cons 1.259080e-05   p_joint 3.631961e-06

Joint ci ratio: 9.799980e-01	ci left: 2.027872e-06	ci right 5.975891e-06	k: 15	n:4140000
Cons ci ratio: 5.384499e-01	ci left: 9.380711e-06	ci right 1.647124e-05	k: 52	n:4140000
KS ci ratio: 6.536855e-02	ci left: 8.395003e-04	ci right 8.964672e-04	k: 3592	n:4140000
SLC2A6   4140000 perm   6829 sec   (606 perm/sec)   p_kst 8.676329e-04   p_cons 1.256039e-05   p_joint 3.623188e-06

Joint ci ratio: 9.799980e-01	ci left: 2.022986e-06	ci right 5.961492e-06	k: 15	n:4150000
Cons ci ratio: 5.384499e-01	ci left: 9.358107e-06	ci right 1.643155e-05	k: 52	n:4150000
KS ci ratio: 6.527776e-02	ci left: 8.398477e-04	ci right 8.967560e-04	k: 3602	n:4150000
SLC2A6   4150000 perm   6860 sec   (605 perm/sec)   p_kst 8.679518e-04   p_cons 1.253012e-05   p_joint 3.614458e-06

Joint ci ratio: 9.799980e-01	ci left: 2.018123e-06	ci right 5.947161e-06	k: 15	n:4160000
Cons ci ratio: 5.384499e-01	ci left: 9.335612e-06	ci right 1.639206e-05	k: 52	n:4160000
KS ci ratio: 6.521446e-02	ci left: 8.394841e-04	ci right 8.963105e-04	k: 3609	n:4160000
SLC2A6   4160000 perm   6892 sec   (604 perm/sec)   p_kst 8.675481e-04   p_cons 1.250000e-05   p_joint 3.605769e-06

Joint ci ratio: 9.799980e-01	ci left: 2.013283e-06	ci right 5.932899e-06	k: 15	n:4170000
Cons ci ratio: 5.384499e-01	ci left: 9.313224e-06	ci right 1.635275e-05	k: 52	n:4170000
KS ci ratio: 6.513332e-02	ci left: 8.395941e-04	ci right 8.963545e-04	k: 3618	n:4170000
SLC2A6   4170000 perm   6924 sec   (602 perm/sec)   p_kst 8.676259e-04   p_cons 1.247002e-05   p_joint 3.597122e-06

Joint ci ratio: 9.799980e-01	ci left: 2.008467e-06	ci right 5.918706e-06	k: 15	n:4180000
Cons ci ratio: 5.334409e-01	ci left: 9.497774e-06	ci right 1.658497e-05	k: 53	n:4180000
KS ci ratio: 6.507043e-02	ci left: 8.392328e-04	ci right 8.959120e-04	k: 3625	n:4180000
SLC2A6   4180000 perm   6955 sec   (601 perm/sec)   p_kst 8.672249e-04   p_cons 1.267943e-05   p_joint 3.588517e-06

Joint ci ratio: 9.799980e-01	ci left: 2.003673e-06	ci right 5.904580e-06	k: 15	n:4190000
Cons ci ratio: 5.285692e-01	ci left: 9.681748e-06	ci right 1.681579e-05	k: 54	n:4190000
KS ci ratio: 6.500772e-02	ci left: 8.388734e-04	ci right 8.954716e-04	k: 3632	n:4190000
SLC2A6   4190000 perm   6987 sec   (600 perm/sec)   p_kst 8.668258e-04   p_cons 1.288783e-05   p_joint 3.579952e-06

Joint ci ratio: 9.799980e-01	ci left: 1.998903e-06	ci right 5.890521e-06	k: 15	n:4200000
Cons ci ratio: 5.285692e-01	ci left: 9.658696e-06	ci right 1.677575e-05	k: 54	n:4200000
KS ci ratio: 6.495413e-02	ci left: 8.382814e-04	ci right 8.947913e-04	k: 3638	n:4200000
SLC2A6   4200000 perm   7018 sec   (598 perm/sec)   p_kst 8.661905e-04   p_cons 1.285714e-05   p_joint 3.571429e-06

Joint ci ratio: 9.799980e-01	ci left: 1.994155e-06	ci right 5.876530e-06	k: 15	n:4210000
Cons ci ratio: 5.285692e-01	ci left: 9.635753e-06	ci right 1.673590e-05	k: 54	n:4210000
KS ci ratio: 6.491850e-02	ci left: 8.372249e-04	ci right 8.936315e-04	k: 3642	n:4210000
SLC2A6   4210000 perm   7050 sec   (597 perm/sec)   p_kst 8.650831e-04   p_cons 1.282660e-05   p_joint 3.562945e-06

Joint ci ratio: 9.799980e-01	ci left: 1.989429e-06	ci right 5.862604e-06	k: 15	n:4220000
Cons ci ratio: 5.285692e-01	ci left: 9.612920e-06	ci right 1.669624e-05	k: 54	n:4220000
KS ci ratio: 6.486512e-02	ci left: 8.366397e-04	ci right 8.929588e-04	k: 3648	n:4220000
SLC2A6   4220000 perm   7081 sec   (596 perm/sec)   p_kst 8.644550e-04   p_cons 1.279621e-05   p_joint 3.554502e-06

Joint ci ratio: 9.799980e-01	ci left: 1.984726e-06	ci right 5.848745e-06	k: 15	n:4230000
Cons ci ratio: 5.285692e-01	ci left: 9.590194e-06	ci right 1.665677e-05	k: 54	n:4230000
KS ci ratio: 6.474100e-02	ci left: 8.379179e-04	ci right 8.942110e-04	k: 3662	n:4230000
SLC2A6   4230000 perm   7113 sec   (595 perm/sec)   p_kst 8.657210e-04   p_cons 1.276596e-05   p_joint 3.546099e-06

Joint ci ratio: 9.799980e-01	ci left: 1.980045e-06	ci right 5.834951e-06	k: 15	n:4240000
Cons ci ratio: 5.285692e-01	ci left: 9.567576e-06	ci right 1.661749e-05	k: 54	n:4240000
KS ci ratio: 6.466161e-02	ci left: 8.380300e-04	ci right 8.942590e-04	k: 3671	n:4240000
SLC2A6   4240000 perm   7145 sec   (593 perm/sec)   p_kst 8.658019e-04   p_cons 1.273585e-05   p_joint 3.537736e-06

Joint ci ratio: 9.799980e-01	ci left: 1.975386e-06	ci right 5.821221e-06	k: 15	n:4250000
Cons ci ratio: 5.285692e-01	ci left: 9.545064e-06	ci right 1.657839e-05	k: 54	n:4250000
KS ci ratio: 6.455619e-02	ci left: 8.388361e-04	ci right 8.950240e-04	k: 3683	n:4250000
SLC2A6   4250000 perm   7178 sec   (592 perm/sec)   p_kst 8.665882e-04   p_cons 1.270588e-05   p_joint 3.529412e-06

Joint ci ratio: 9.799980e-01	ci left: 1.970749e-06	ci right 5.807556e-06	k: 15	n:4260000
Cons ci ratio: 5.285692e-01	ci left: 9.522658e-06	ci right 1.653947e-05	k: 54	n:4260000
KS ci ratio: 6.446874e-02	ci left: 8.391765e-04	ci right 8.953083e-04	k: 3693	n:4260000
SLC2A6   4260000 perm   7209 sec   (591 perm/sec)   p_kst 8.669014e-04   p_cons 1.267606e-05   p_joint 3.521127e-06

Joint ci ratio: 9.799980e-01	ci left: 1.966134e-06	ci right 5.793956e-06	k: 15	n:4270000
Cons ci ratio: 5.285692e-01	ci left: 9.500356e-06	ci right 1.650074e-05	k: 54	n:4270000
KS ci ratio: 6.438165e-02	ci left: 8.395154e-04	ci right 8.955912e-04	k: 3703	n:4270000
SLC2A6   4270000 perm   7241 sec   (590 perm/sec)   p_kst 8.672131e-04   p_cons 1.264637e-05   p_joint 3.512881e-06

Joint ci ratio: 9.799981e-01	ci left: 1.961540e-06	ci right 5.780418e-06	k: 15	n:4280000
Cons ci ratio: 5.285692e-01	ci left: 9.478159e-06	ci right 1.646218e-05	k: 54	n:4280000
KS ci ratio: 6.432959e-02	ci left: 8.389333e-04	ci right 8.949231e-04	k: 3709	n:4280000
SLC2A6   4280000 perm   7274 sec   (588 perm/sec)   p_kst 8.665888e-04   p_cons 1.261682e-05   p_joint 3.504673e-06

Joint ci ratio: 9.799981e-01	ci left: 1.956968e-06	ci right 5.766944e-06	k: 15	n:4290000
Cons ci ratio: 5.285692e-01	ci left: 9.456065e-06	ci right 1.642381e-05	k: 54	n:4290000
KS ci ratio: 6.427765e-02	ci left: 8.383538e-04	ci right 8.942581e-04	k: 3715	n:4290000
SLC2A6   4290000 perm   7306 sec   (587 perm/sec)   p_kst 8.659674e-04   p_cons 1.258741e-05   p_joint 3.496503e-06

Joint ci ratio: 9.799981e-01	ci left: 1.952417e-06	ci right 5.753533e-06	k: 15	n:4300000
Cons ci ratio: 5.285693e-01	ci left: 9.434075e-06	ci right 1.638562e-05	k: 54	n:4300000
KS ci ratio: 6.421721e-02	ci left: 8.380059e-04	ci right 8.938325e-04	k: 3722	n:4300000
SLC2A6   4300000 perm   7338 sec   (586 perm/sec)   p_kst 8.655814e-04   p_cons 1.255814e-05   p_joint 3.488372e-06

Joint ci ratio: 9.799981e-01	ci left: 1.947887e-06	ci right 5.740184e-06	k: 15	n:4310000
Cons ci ratio: 5.285693e-01	ci left: 9.412186e-06	ci right 1.634760e-05	k: 54	n:4310000
KS ci ratio: 6.413972e-02	ci left: 8.381162e-04	ci right 8.938804e-04	k: 3731	n:4310000
SLC2A6   4310000 perm   7371 sec   (585 perm/sec)   p_kst 8.656613e-04   p_cons 1.252900e-05   p_joint 3.480278e-06

Joint ci ratio: 9.799981e-01	ci left: 1.943378e-06	ci right 5.726896e-06	k: 15	n:4320000
Cons ci ratio: 5.285693e-01	ci left: 9.390398e-06	ci right 1.630976e-05	k: 54	n:4320000
KS ci ratio: 6.410541e-02	ci left: 8.370872e-04	ci right 8.927520e-04	k: 3735	n:4320000
SLC2A6   4320000 perm   7404 sec   (583 perm/sec)   p_kst 8.645833e-04   p_cons 1.250000e-05   p_joint 3.472222e-06

Joint ci ratio: 9.799981e-01	ci left: 1.938890e-06	ci right 5.713670e-06	k: 15	n:4330000
Cons ci ratio: 5.285693e-01	ci left: 9.368711e-06	ci right 1.627209e-05	k: 54	n:4330000
KS ci ratio: 6.403689e-02	ci left: 8.369720e-04	ci right 8.925674e-04	k: 3743	n:4330000
SLC2A6   4330000 perm   7436 sec   (582 perm/sec)   p_kst 8.644342e-04   p_cons 1.247113e-05   p_joint 3.464203e-06

Joint ci ratio: 9.507377e-01	ci left: 2.107232e-06	ci right 5.986859e-06	k: 16	n:4340000
Cons ci ratio: 5.238286e-01	ci left: 9.546909e-06	ci right 1.649537e-05	k: 55	n:4340000
KS ci ratio: 6.396006e-02	ci left: 8.370840e-04	ci right 8.926177e-04	k: 3752	n:4340000
SLC2A6   4340000 perm   7469 sec   (581 perm/sec)   p_kst 8.645161e-04   p_cons 1.267281e-05   p_joint 3.686636e-06

Joint ci ratio: 9.507377e-01	ci left: 2.102388e-06	ci right 5.973096e-06	k: 16	n:4350000
Cons ci ratio: 5.238286e-01	ci left: 9.524962e-06	ci right 1.645745e-05	k: 55	n:4350000
KS ci ratio: 6.391753e-02	ci left: 8.362907e-04	ci right 8.917335e-04	k: 3757	n:4350000
SLC2A6   4350000 perm   7501 sec   (580 perm/sec)   p_kst 8.636782e-04   p_cons 1.264368e-05   p_joint 3.678161e-06

Joint ci ratio: 9.507377e-01	ci left: 2.097566e-06	ci right 5.959396e-06	k: 16	n:4360000
Cons ci ratio: 5.192132e-01	ci left: 9.702261e-06	ci right 1.667902e-05	k: 56	n:4360000
KS ci ratio: 6.380722e-02	ci left: 8.373067e-04	ci right 8.927175e-04	k: 3770	n:4360000
SLC2A6   4360000 perm   7534 sec   (579 perm/sec)   p_kst 8.646789e-04   p_cons 1.284404e-05   p_joint 3.669725e-06

Joint ci ratio: 9.507377e-01	ci left: 2.092766e-06	ci right 5.945759e-06	k: 16	n:4370000
Cons ci ratio: 5.192132e-01	ci left: 9.680059e-06	ci right 1.664085e-05	k: 56	n:4370000
KS ci ratio: 6.372278e-02	ci left: 8.376425e-04	ci right 8.929994e-04	k: 3780	n:4370000
SLC2A6   4370000 perm   7567 sec   (577 perm/sec)   p_kst 8.649886e-04   p_cons 1.281465e-05   p_joint 3.661327e-06

Joint ci ratio: 9.507377e-01	ci left: 2.087988e-06	ci right 5.932184e-06	k: 16	n:4380000
Cons ci ratio: 5.192132e-01	ci left: 9.657959e-06	ci right 1.660286e-05	k: 56	n:4380000
KS ci ratio: 6.364707e-02	ci left: 8.377521e-04	ci right 8.930481e-04	k: 3789	n:4380000
SLC2A6   4380000 perm   7600 sec   (576 perm/sec)   p_kst 8.650685e-04   p_cons 1.278539e-05   p_joint 3.652968e-06

Joint ci ratio: 9.507377e-01	ci left: 2.083232e-06	ci right 5.918672e-06	k: 16	n:4390000
Cons ci ratio: 5.147178e-01	ci left: 9.834011e-06	ci right 1.682232e-05	k: 57	n:4390000
KS ci ratio: 6.355489e-02	ci left: 8.383097e-04	ci right 8.935594e-04	k: 3800	n:4390000
SLC2A6   4390000 perm   7633 sec   (575 perm/sec)   p_kst 8.656036e-04   p_cons 1.298405e-05   p_joint 3.644647e-06

Joint ci ratio: 9.507377e-01	ci left: 2.078497e-06	ci right 5.905220e-06	k: 16	n:4400000
Cons ci ratio: 5.147178e-01	ci left: 9.811661e-06	ci right 1.678408e-05	k: 57	n:4400000
KS ci ratio: 6.346311e-02	ci left: 8.388647e-04	ci right 8.940682e-04	k: 3811	n:4400000
SLC2A6   4400000 perm   7667 sec   (574 perm/sec)   p_kst 8.661364e-04   p_cons 1.295455e-05   p_joint 3.636364e-06

Joint ci ratio: 9.507377e-01	ci left: 2.073784e-06	ci right 5.891830e-06	k: 16	n:4410000
Cons ci ratio: 5.147178e-01	ci left: 9.789412e-06	ci right 1.674603e-05	k: 57	n:4410000
KS ci ratio: 6.336343e-02	ci left: 8.396405e-04	ci right 8.948051e-04	k: 3823	n:4410000
SLC2A6   4410000 perm   7699 sec   (573 perm/sec)   p_kst 8.668934e-04   p_cons 1.292517e-05   p_joint 3.628118e-06

Joint ci ratio: 9.507377e-01	ci left: 2.069092e-06	ci right 5.878500e-06	k: 16	n:4420000
Cons ci ratio: 5.147178e-01	ci left: 9.767264e-06	ci right 1.670814e-05	k: 57	n:4420000
KS ci ratio: 6.332208e-02	ci left: 8.388542e-04	ci right 8.939298e-04	k: 3828	n:4420000
SLC2A6   4420000 perm   7732 sec   (572 perm/sec)   p_kst 8.660633e-04   p_cons 1.289593e-05   p_joint 3.619910e-06

Joint ci ratio: 9.507377e-01	ci left: 2.064422e-06	ci right 5.865230e-06	k: 16	n:4430000
Cons ci ratio: 5.147178e-01	ci left: 9.745216e-06	ci right 1.667042e-05	k: 57	n:4430000
KS ci ratio: 6.325603e-02	ci left: 8.387379e-04	ci right 8.937463e-04	k: 3836	n:4430000
SLC2A6   4430000 perm   7766 sec   (570 perm/sec)   p_kst 8.659142e-04   p_cons 1.286682e-05   p_joint 3.611738e-06

Joint ci ratio: 9.507377e-01	ci left: 2.059772e-06	ci right 5.852020e-06	k: 16	n:4440000
Cons ci ratio: 5.103371e-01	ci left: 9.919346e-06	ci right 1.688701e-05	k: 58	n:4440000
KS ci ratio: 6.322312e-02	ci left: 8.377355e-04	ci right 8.926486e-04	k: 3840	n:4440000
SLC2A6   4440000 perm   7798 sec   (569 perm/sec)   p_kst 8.648649e-04   p_cons 1.306306e-05   p_joint 3.603604e-06

Joint ci ratio: 9.507377e-01	ci left: 2.055143e-06	ci right 5.838869e-06	k: 16	n:4450000
Cons ci ratio: 5.103371e-01	ci left: 9.897055e-06	ci right 1.684906e-05	k: 58	n:4450000
KS ci ratio: 6.319026e-02	ci left: 8.367376e-04	ci right 8.915557e-04	k: 3844	n:4450000
SLC2A6   4450000 perm   7832 sec   (568 perm/sec)   p_kst 8.638202e-04   p_cons 1.303371e-05   p_joint 3.595506e-06

Joint ci ratio: 9.507377e-01	ci left: 2.050536e-06	ci right 5.825778e-06	k: 16	n:4460000
Cons ci ratio: 5.103371e-01	ci left: 9.874864e-06	ci right 1.681128e-05	k: 58	n:4460000
KS ci ratio: 6.311643e-02	ci left: 8.368475e-04	ci right 8.916065e-04	k: 3853	n:4460000
SLC2A6   4460000 perm   7866 sec   (567 perm/sec)   p_kst 8.639013e-04   p_cons 1.300448e-05   p_joint 3.587444e-06

Joint ci ratio: 9.507377e-01	ci left: 2.045948e-06	ci right 5.812745e-06	k: 16	n:4470000
Cons ci ratio: 5.103371e-01	ci left: 9.852773e-06	ci right 1.677367e-05	k: 58	n:4470000
KS ci ratio: 6.303470e-02	ci left: 8.371773e-04	ci right 8.918843e-04	k: 3863	n:4470000
SLC2A6   4470000 perm   7899 sec   (566 perm/sec)   p_kst 8.642058e-04   p_cons 1.297539e-05   p_joint 3.579418e-06

Joint ci ratio: 9.507377e-01	ci left: 2.041381e-06	ci right 5.799770e-06	k: 16	n:4480000
Cons ci ratio: 5.103371e-01	ci left: 9.830780e-06	ci right 1.673623e-05	k: 58	n:4480000
KS ci ratio: 6.297769e-02	ci left: 8.368464e-04	ci right 8.914806e-04	k: 3870	n:4480000
SLC2A6   4480000 perm   7932 sec   (565 perm/sec)   p_kst 8.638393e-04   p_cons 1.294643e-05   p_joint 3.571429e-06

Joint ci ratio: 9.507377e-01	ci left: 2.036835e-06	ci right 5.786853e-06	k: 16	n:4490000
Cons ci ratio: 5.103371e-01	ci left: 9.808885e-06	ci right 1.669896e-05	k: 58	n:4490000
KS ci ratio: 6.292084e-02	ci left: 8.365171e-04	ci right 8.910786e-04	k: 3877	n:4490000
SLC2A6   4490000 perm   7966 sec   (564 perm/sec)   p_kst 8.634744e-04   p_cons 1.291759e-05   p_joint 3.563474e-06

Joint ci ratio: 9.507377e-01	ci left: 2.032309e-06	ci right 5.773993e-06	k: 16	n:4500000
Cons ci ratio: 5.103371e-01	ci left: 9.787088e-06	ci right 1.666185e-05	k: 58	n:4500000
KS ci ratio: 6.281561e-02	ci left: 8.375017e-04	ci right 8.920327e-04	k: 3890	n:4500000
SLC2A6   4500000 perm   8000 sec   (563 perm/sec)   p_kst 8.644444e-04   p_cons 1.288889e-05   p_joint 3.555556e-06

Joint ci ratio: 9.507378e-01	ci left: 2.027802e-06	ci right 5.761190e-06	k: 16	n:4510000
Cons ci ratio: 5.103371e-01	ci left: 9.765387e-06	ci right 1.662490e-05	k: 58	n:4510000
KS ci ratio: 6.272699e-02	ci left: 8.380454e-04	ci right 8.925321e-04	k: 3901	n:4510000
SLC2A6   4510000 perm   8034 sec   (561 perm/sec)   p_kst 8.649667e-04   p_cons 1.286031e-05   p_joint 3.547672e-06

Joint ci ratio: 9.507378e-01	ci left: 2.023316e-06	ci right 5.748444e-06	k: 16	n:4520000
Cons ci ratio: 5.103371e-01	ci left: 9.743782e-06	ci right 1.658812e-05	k: 58	n:4520000
KS ci ratio: 6.267883e-02	ci left: 8.374980e-04	ci right 8.919058e-04	k: 3907	n:4520000
SLC2A6   4520000 perm   8067 sec   (560 perm/sec)   p_kst 8.643805e-04   p_cons 1.283186e-05   p_joint 3.539823e-06

Joint ci ratio: 9.507378e-01	ci left: 2.018850e-06	ci right 5.735755e-06	k: 16	n:4530000
Cons ci ratio: 5.060664e-01	ci left: 9.914702e-06	ci right 1.680034e-05	k: 59	n:4530000
KS ci ratio: 6.255885e-02	ci left: 8.389086e-04	ci right 8.933000e-04	k: 3922	n:4530000
SLC2A6   4530000 perm   8101 sec   (559 perm/sec)   p_kst 8.657837e-04   p_cons 1.302428e-05   p_joint 3.532009e-06

Joint ci ratio: 9.507378e-01	ci left: 2.014403e-06	ci right 5.723121e-06	k: 16	n:4540000
Cons ci ratio: 5.060664e-01	ci left: 9.892863e-06	ci right 1.676334e-05	k: 59	n:4540000
KS ci ratio: 6.250312e-02	ci left: 8.385786e-04	ci right 8.928983e-04	k: 3929	n:4540000
SLC2A6   4540000 perm   8135 sec   (558 perm/sec)   p_kst 8.654185e-04   p_cons 1.299559e-05   p_joint 3.524229e-06

Joint ci ratio: 9.507378e-01	ci left: 2.009975e-06	ci right 5.710543e-06	k: 16	n:4550000
Cons ci ratio: 5.060664e-01	ci left: 9.871120e-06	ci right 1.672650e-05	k: 59	n:4550000
KS ci ratio: 6.242374e-02	ci left: 8.388990e-04	ci right 8.931680e-04	k: 3939	n:4550000
SLC2A6   4550000 perm   8170 sec   (557 perm/sec)   p_kst 8.657143e-04   p_cons 1.296703e-05   p_joint 3.516484e-06

Joint ci ratio: 9.507378e-01	ci left: 2.005568e-06	ci right 5.698020e-06	k: 16	n:4560000
Cons ci ratio: 5.060664e-01	ci left: 9.849473e-06	ci right 1.668982e-05	k: 59	n:4560000
KS ci ratio: 6.236047e-02	ci left: 8.387863e-04	ci right 8.929910e-04	k: 3947	n:4560000
SLC2A6   4560000 perm   8204 sec   (556 perm/sec)   p_kst 8.655702e-04   p_cons 1.293860e-05   p_joint 3.508772e-06

Joint ci ratio: 9.507378e-01	ci left: 2.001179e-06	ci right 5.685551e-06	k: 16	n:4570000
Cons ci ratio: 5.060664e-01	ci left: 9.827921e-06	ci right 1.665330e-05	k: 59	n:4570000
KS ci ratio: 6.229739e-02	ci left: 8.386742e-04	ci right 8.928148e-04	k: 3955	n:4570000
SLC2A6   4570000 perm   8238 sec   (555 perm/sec)   p_kst 8.654267e-04   p_cons 1.291028e-05   p_joint 3.501094e-06

Joint ci ratio: 9.507378e-01	ci left: 1.996810e-06	ci right 5.673137e-06	k: 16	n:4580000
Cons ci ratio: 5.060665e-01	ci left: 9.806462e-06	ci right 1.661693e-05	k: 59	n:4580000
KS ci ratio: 6.222664e-02	ci left: 8.387775e-04	ci right 8.928611e-04	k: 3964	n:4580000
SLC2A6   4580000 perm   8272 sec   (554 perm/sec)   p_kst 8.655022e-04   p_cons 1.288210e-05   p_joint 3.493450e-06

Joint ci ratio: 9.507378e-01	ci left: 1.992459e-06	ci right 5.660778e-06	k: 16	n:4590000
Cons ci ratio: 5.060665e-01	ci left: 9.785098e-06	ci right 1.658073e-05	k: 59	n:4590000
KS ci ratio: 6.215614e-02	ci left: 8.388804e-04	ci right 8.929072e-04	k: 3973	n:4590000
SLC2A6   4590000 perm   8307 sec   (553 perm/sec)   p_kst 8.655773e-04   p_cons 1.285403e-05   p_joint 3.485839e-06

Joint ci ratio: 9.507378e-01	ci left: 1.988128e-06	ci right 5.648472e-06	k: 16	n:4600000
Cons ci ratio: 5.060665e-01	ci left: 9.763826e-06	ci right 1.654469e-05	k: 59	n:4600000
KS ci ratio: 6.209367e-02	ci left: 8.387688e-04	ci right 8.927322e-04	k: 3981	n:4600000
SLC2A6   4600000 perm   8342 sec   (551 perm/sec)   p_kst 8.654348e-04   p_cons 1.282609e-05   p_joint 3.478261e-06

Joint ci ratio: 9.507378e-01	ci left: 1.983815e-06	ci right 5.636219e-06	k: 16	n:4610000
Cons ci ratio: 5.060665e-01	ci left: 9.742646e-06	ci right 1.650880e-05	k: 59	n:4610000
KS ci ratio: 6.204696e-02	ci left: 8.382307e-04	ci right 8.921174e-04	k: 3987	n:4610000
SLC2A6   4610000 perm   8376 sec   (550 perm/sec)   p_kst 8.648590e-04   p_cons 1.279826e-05   p_joint 3.470716e-06

Joint ci ratio: 9.507378e-01	ci left: 1.979521e-06	ci right 5.624019e-06	k: 16	n:4620000
Cons ci ratio: 5.060665e-01	ci left: 9.721558e-06	ci right 1.647307e-05	k: 59	n:4620000
KS ci ratio: 6.197706e-02	ci left: 8.383342e-04	ci right 8.921647e-04	k: 3996	n:4620000
SLC2A6   4620000 perm   8411 sec   (549 perm/sec)   p_kst 8.649351e-04   p_cons 1.277056e-05   p_joint 3.463203e-06

Joint ci ratio: 9.507378e-01	ci left: 1.975246e-06	ci right 5.611872e-06	k: 16	n:4630000
Cons ci ratio: 5.060665e-01	ci left: 9.700561e-06	ci right 1.643749e-05	k: 59	n:4630000
KS ci ratio: 6.193062e-02	ci left: 8.377994e-04	ci right 8.915537e-04	k: 4002	n:4630000
SLC2A6   4630000 perm   8446 sec   (548 perm/sec)   p_kst 8.643629e-04   p_cons 1.274298e-05   p_joint 3.455724e-06

Joint ci ratio: 9.239510e-01	ci left: 2.134296e-06	ci right 5.866081e-06	k: 17	n:4640000
Cons ci ratio: 5.019012e-01	ci left: 9.867756e-06	ci right 1.664477e-05	k: 60	n:4640000
KS ci ratio: 6.186883e-02	ci left: 8.376912e-04	ci right 8.913831e-04	k: 4010	n:4640000
SLC2A6   4640000 perm   8481 sec   (547 perm/sec)   p_kst 8.642241e-04   p_cons 1.293103e-05   p_joint 3.663793e-06

Joint ci ratio: 9.239510e-01	ci left: 2.129706e-06	ci right 5.853466e-06	k: 17	n:4650000
Cons ci ratio: 5.019012e-01	ci left: 9.846535e-06	ci right 1.660898e-05	k: 60	n:4650000
KS ci ratio: 6.176110e-02	ci left: 8.388539e-04	ci right 8.925234e-04	k: 4024	n:4650000
SLC2A6   4650000 perm   8516 sec   (546 perm/sec)   p_kst 8.653763e-04   p_cons 1.290323e-05   p_joint 3.655914e-06

Joint ci ratio: 9.239510e-01	ci left: 2.125136e-06	ci right 5.840905e-06	k: 17	n:4660000
Cons ci ratio: 5.019012e-01	ci left: 9.825405e-06	ci right 1.657334e-05	k: 60	n:4660000
KS ci ratio: 6.173047e-02	ci left: 8.378989e-04	ci right 8.914798e-04	k: 4028	n:4660000
SLC2A6   4660000 perm   8551 sec   (545 perm/sec)   p_kst 8.643777e-04   p_cons 1.287554e-05   p_joint 3.648069e-06

Joint ci ratio: 9.239510e-01	ci left: 2.120585e-06	ci right 5.828398e-06	k: 17	n:4670000
Cons ci ratio: 5.019012e-01	ci left: 9.804365e-06	ci right 1.653785e-05	k: 60	n:4670000
KS ci ratio: 6.167692e-02	ci left: 8.375805e-04	ci right 8.910929e-04	k: 4035	n:4670000
SLC2A6   4670000 perm   8586 sec   (544 perm/sec)   p_kst 8.640257e-04   p_cons 1.284797e-05   p_joint 3.640257e-06

Joint ci ratio: 9.239510e-01	ci left: 2.116054e-06	ci right 5.815944e-06	k: 17	n:4680000
Cons ci ratio: 5.019012e-01	ci left: 9.783416e-06	ci right 1.650251e-05	k: 60	n:4680000
KS ci ratio: 6.158541e-02	ci left: 8.383154e-04	ci right 8.917924e-04	k: 4047	n:4680000
SLC2A6   4680000 perm   8621 sec   (543 perm/sec)   p_kst 8.647436e-04   p_cons 1.282051e-05   p_joint 3.632479e-06

Joint ci ratio: 9.239510e-01	ci left: 2.111542e-06	ci right 5.803543e-06	k: 17	n:4690000
Cons ci ratio: 4.978372e-01	ci left: 9.948877e-06	ci right 1.670723e-05	k: 61	n:4690000
KS ci ratio: 6.153984e-02	ci left: 8.377876e-04	ci right 8.911900e-04	k: 4053	n:4690000
SLC2A6   4690000 perm   8655 sec   (542 perm/sec)   p_kst 8.641791e-04   p_cons 1.300640e-05   p_joint 3.624733e-06

Joint ci ratio: 9.239510e-01	ci left: 2.107050e-06	ci right 5.791195e-06	k: 17	n:4700000
Cons ci ratio: 4.978372e-01	ci left: 9.927709e-06	ci right 1.667168e-05	k: 61	n:4700000
KS ci ratio: 6.147164e-02	ci left: 8.378905e-04	ci right 8.912381e-04	k: 4062	n:4700000
SLC2A6   4700000 perm   8691 sec   (541 perm/sec)   p_kst 8.642553e-04   p_cons 1.297872e-05   p_joint 3.617021e-06

Joint ci ratio: 9.239510e-01	ci left: 2.102576e-06	ci right 5.778900e-06	k: 17	n:4710000
Cons ci ratio: 4.978372e-01	ci left: 9.906631e-06	ci right 1.663629e-05	k: 61	n:4710000
KS ci ratio: 6.138104e-02	ci left: 8.386202e-04	ci right 8.919328e-04	k: 4074	n:4710000
SLC2A6   4710000 perm   8725 sec   (540 perm/sec)   p_kst 8.649682e-04   p_cons 1.295117e-05   p_joint 3.609342e-06

Joint ci ratio: 9.239510e-01	ci left: 2.098121e-06	ci right 5.766656e-06	k: 17	n:4720000
Cons ci ratio: 4.978372e-01	ci left: 9.885642e-06	ci right 1.660104e-05	k: 61	n:4720000
KS ci ratio: 6.132088e-02	ci left: 8.385124e-04	ci right 8.917640e-04	k: 4082	n:4720000
SLC2A6   4720000 perm   8761 sec   (539 perm/sec)   p_kst 8.648305e-04   p_cons 1.292373e-05   p_joint 3.601695e-06

Joint ci ratio: 9.239510e-01	ci left: 2.093686e-06	ci right 5.754465e-06	k: 17	n:4730000
Cons ci ratio: 4.978372e-01	ci left: 9.864743e-06	ci right 1.656594e-05	k: 61	n:4730000
KS ci ratio: 6.122347e-02	ci left: 8.394459e-04	ci right 8.926692e-04	k: 4095	n:4730000
SLC2A6   4730000 perm   8796 sec   (538 perm/sec)   p_kst 8.657505e-04   p_cons 1.289641e-05   p_joint 3.594080e-06

Joint ci ratio: 9.239510e-01	ci left: 2.089269e-06	ci right 5.742324e-06	k: 17	n:4740000
Cons ci ratio: 4.978372e-01	ci left: 9.843931e-06	ci right 1.653099e-05	k: 61	n:4740000
KS ci ratio: 6.115631e-02	ci left: 8.395446e-04	ci right 8.927137e-04	k: 4104	n:4740000
SLC2A6   4740000 perm   8832 sec   (537 perm/sec)   p_kst 8.658228e-04   p_cons 1.286920e-05   p_joint 3.586498e-06

Joint ci ratio: 9.239510e-01	ci left: 2.084870e-06	ci right 5.730235e-06	k: 17	n:4750000
Cons ci ratio: 4.978372e-01	ci left: 9.823207e-06	ci right 1.649619e-05	k: 61	n:4750000
KS ci ratio: 6.109681e-02	ci left: 8.394356e-04	ci right 8.925443e-04	k: 4112	n:4750000
SLC2A6   4750000 perm   8868 sec   (536 perm/sec)   p_kst 8.656842e-04   p_cons 1.284211e-05   p_joint 3.578947e-06

Joint ci ratio: 9.239510e-01	ci left: 2.080490e-06	ci right 5.718197e-06	k: 17	n:4760000
Cons ci ratio: 4.978372e-01	ci left: 9.802570e-06	ci right 1.646154e-05	k: 61	n:4760000
KS ci ratio: 6.102267e-02	ci left: 8.397409e-04	ci right 8.928021e-04	k: 4122	n:4760000
SLC2A6   4760000 perm   8903 sec   (535 perm/sec)   p_kst 8.659664e-04   p_cons 1.281513e-05   p_joint 3.571429e-06

Joint ci ratio: 9.239510e-01	ci left: 2.076128e-06	ci right 5.706209e-06	k: 17	n:4770000
Cons ci ratio: 4.978372e-01	ci left: 9.782019e-06	ci right 1.642703e-05	k: 61	n:4770000
KS ci ratio: 6.094879e-02	ci left: 8.400449e-04	ci right 8.930588e-04	k: 4132	n:4770000
SLC2A6   4770000 perm   8939 sec   (534 perm/sec)   p_kst 8.662474e-04   p_cons 1.278826e-05   p_joint 3.563941e-06

Joint ci ratio: 9.239510e-01	ci left: 2.071785e-06	ci right 5.694271e-06	k: 17	n:4780000
Cons ci ratio: 4.978372e-01	ci left: 9.761555e-06	ci right 1.639266e-05	k: 61	n:4780000
KS ci ratio: 6.086048e-02	ci left: 8.407597e-04	ci right 8.937391e-04	k: 4144	n:4780000
SLC2A6   4780000 perm   8975 sec   (533 perm/sec)   p_kst 8.669456e-04   p_cons 1.276151e-05   p_joint 3.556485e-06

Joint ci ratio: 9.239510e-01	ci left: 2.067460e-06	ci right 5.682384e-06	k: 17	n:4790000
Cons ci ratio: 4.978372e-01	ci left: 9.741176e-06	ci right 1.635844e-05	k: 61	n:4790000
KS ci ratio: 6.083117e-02	ci left: 8.398268e-04	ci right 8.927211e-04	k: 4148	n:4790000
SLC2A6   4790000 perm   9011 sec   (532 perm/sec)   p_kst 8.659708e-04   p_cons 1.273486e-05   p_joint 3.549061e-06

Joint ci ratio: 9.239510e-01	ci left: 2.063153e-06	ci right 5.670545e-06	k: 17	n:4800000
Cons ci ratio: 4.978372e-01	ci left: 9.720882e-06	ci right 1.632436e-05	k: 61	n:4800000
KS ci ratio: 6.077992e-02	ci left: 8.395134e-04	ci right 8.923417e-04	k: 4155	n:4800000
SLC2A6   4800000 perm   9047 sec   (531 perm/sec)   p_kst 8.656250e-04   p_cons 1.270833e-05   p_joint 3.541667e-06

Joint ci ratio: 9.239510e-01	ci left: 2.058863e-06	ci right 5.658756e-06	k: 17	n:4810000
Cons ci ratio: 4.978372e-01	ci left: 9.700672e-06	ci right 1.629042e-05	k: 61	n:4810000
KS ci ratio: 6.075073e-02	ci left: 8.385870e-04	ci right 8.913308e-04	k: 4159	n:4810000
SLC2A6   4810000 perm   9082 sec   (530 perm/sec)   p_kst 8.646570e-04   p_cons 1.268191e-05   p_joint 3.534304e-06

Joint ci ratio: 9.239510e-01	ci left: 2.054592e-06	ci right 5.647016e-06	k: 17	n:4820000
Cons ci ratio: 4.938703e-01	ci left: 9.862056e-06	ci right 1.648985e-05	k: 62	n:4820000
KS ci ratio: 6.068511e-02	ci left: 8.386860e-04	ci right 8.913771e-04	k: 4168	n:4820000
SLC2A6   4820000 perm   9118 sec   (529 perm/sec)   p_kst 8.647303e-04   p_cons 1.286307e-05   p_joint 3.526971e-06

Joint ci ratio: 9.239510e-01	ci left: 2.050338e-06	ci right 5.635325e-06	k: 17	n:4830000
Cons ci ratio: 4.938703e-01	ci left: 9.841638e-06	ci right 1.645571e-05	k: 62	n:4830000
KS ci ratio: 6.061246e-02	ci left: 8.389886e-04	ci right 8.916334e-04	k: 4178	n:4830000
SLC2A6   4830000 perm   9154 sec   (528 perm/sec)   p_kst 8.650104e-04   p_cons 1.283644e-05   p_joint 3.519669e-06

Joint ci ratio: 8.993078e-01	ci left: 2.204121e-06	ci right 5.877630e-06	k: 18	n:4840000
Cons ci ratio: 4.899967e-01	ci left: 1.000227e-05	ci right 1.665376e-05	k: 63	n:4840000
KS ci ratio: 6.059075e-02	ci left: 8.378656e-04	ci right 8.904204e-04	k: 4181	n:4840000
SLC2A6   4840000 perm   9190 sec   (527 perm/sec)   p_kst 8.638430e-04   p_cons 1.301653e-05   p_joint 3.719008e-06

Joint ci ratio: 8.993078e-01	ci left: 2.199577e-06	ci right 5.865511e-06	k: 18	n:4850000
Cons ci ratio: 4.899967e-01	ci left: 9.981649e-06	ci right 1.661943e-05	k: 63	n:4850000
KS ci ratio: 6.056182e-02	ci left: 8.369503e-04	ci right 8.894218e-04	k: 4185	n:4850000
SLC2A6   4850000 perm   9226 sec   (526 perm/sec)   p_kst 8.628866e-04   p_cons 1.298969e-05   p_joint 3.711340e-06

Joint ci ratio: 8.993078e-01	ci left: 2.195051e-06	ci right 5.853442e-06	k: 18	n:4860000
Cons ci ratio: 4.899967e-01	ci left: 9.961111e-06	ci right 1.658523e-05	k: 63	n:4860000
KS ci ratio: 6.048239e-02	ci left: 8.374573e-04	ci right 8.898893e-04	k: 4196	n:4860000
SLC2A6   4860000 perm   9262 sec   (525 perm/sec)   p_kst 8.633745e-04   p_cons 1.296296e-05   p_joint 3.703704e-06

Joint ci ratio: 8.765368e-01	ci left: 2.348922e-06	ci right 6.092571e-06	k: 19	n:4870000
Cons ci ratio: 4.862129e-01	ci left: 1.012071e-05	ci right 1.678161e-05	k: 64	n:4870000
KS ci ratio: 6.042483e-02	ci left: 8.373556e-04	ci right 8.897295e-04	k: 4204	n:4870000
SLC2A6   4870000 perm   9299 sec   (524 perm/sec)   p_kst 8.632444e-04   p_cons 1.314168e-05   p_joint 3.901437e-06

Joint ci ratio: 5.599971e-01	ci left: 7.252347e-06	ci right 1.304118e-05	k: 48	n:4880000
Cons ci ratio: 4.825153e-01	ci left: 1.027986e-05	ci right 1.697698e-05	k: 65	n:4880000
KS ci ratio: 6.036744e-02	ci left: 8.372542e-04	ci right 8.895704e-04	k: 4212	n:4880000
SLC2A6   4880000 perm   9335 sec   (523 perm/sec)   p_kst 8.631148e-04   p_cons 1.331967e-05   p_joint 9.836066e-06

Joint ci ratio: 5.599971e-01	ci left: 7.237516e-06	ci right 1.301451e-05	k: 48	n:4890000
Cons ci ratio: 4.825153e-01	ci left: 1.025883e-05	ci right 1.694227e-05	k: 65	n:4890000
KS ci ratio: 6.033883e-02	ci left: 8.363477e-04	ci right 8.885816e-04	k: 4216	n:4890000
SLC2A6   4890000 perm   9372 sec   (522 perm/sec)   p_kst 8.621677e-04   p_cons 1.329243e-05   p_joint 9.815951e-06

Joint ci ratio: 5.599971e-01	ci left: 7.222745e-06	ci right 1.298795e-05	k: 48	n:4900000
Cons ci ratio: 4.825153e-01	ci left: 1.023790e-05	ci right 1.690769e-05	k: 65	n:4900000
KS ci ratio: 6.027454e-02	ci left: 8.364499e-04	ci right 8.886326e-04	k: 4225	n:4900000
SLC2A6   4900000 perm   9409 sec   (521 perm/sec)   p_kst 8.622449e-04   p_cons 1.326531e-05   p_joint 9.795918e-06

Joint ci ratio: 5.599971e-01	ci left: 7.208035e-06	ci right 1.296149e-05	k: 48	n:4910000
Cons ci ratio: 4.825154e-01	ci left: 1.021705e-05	ci right 1.687326e-05	k: 65	n:4910000
KS ci ratio: 6.023182e-02	ci left: 8.359499e-04	ci right 8.880632e-04	k: 4231	n:4910000
SLC2A6   4910000 perm   9444 sec   (520 perm/sec)   p_kst 8.617108e-04   p_cons 1.323829e-05   p_joint 9.775967e-06

Joint ci ratio: 5.599972e-01	ci left: 7.193385e-06	ci right 1.293515e-05	k: 48	n:4920000
Cons ci ratio: 4.825154e-01	ci left: 1.019628e-05	ci right 1.683896e-05	k: 65	n:4920000
KS ci ratio: 6.017497e-02	ci left: 8.358524e-04	ci right 8.879087e-04	k: 4239	n:4920000
SLC2A6   4920000 perm   9481 sec   (519 perm/sec)   p_kst 8.615854e-04   p_cons 1.321138e-05   p_joint 9.756098e-06

Joint ci ratio: 5.599972e-01	ci left: 7.178794e-06	ci right 1.290891e-05	k: 48	n:4930000
Cons ci ratio: 4.825154e-01	ci left: 1.017560e-05	ci right 1.680480e-05	k: 65	n:4930000
KS ci ratio: 6.011828e-02	ci left: 8.357553e-04	ci right 8.877547e-04	k: 4247	n:4930000
SLC2A6   4930000 perm   9517 sec   (518 perm/sec)   p_kst 8.614604e-04   p_cons 1.318458e-05   p_joint 9.736308e-06

Joint ci ratio: 5.599972e-01	ci left: 7.164262e-06	ci right 1.288278e-05	k: 48	n:4940000
Cons ci ratio: 4.825154e-01	ci left: 1.015500e-05	ci right 1.677079e-05	k: 65	n:4940000
KS ci ratio: 6.008296e-02	ci left: 8.350604e-04	ci right 8.869850e-04	k: 4252	n:4940000
SLC2A6   4940000 perm   9553 sec   (517 perm/sec)   p_kst 8.607287e-04   p_cons 1.315789e-05   p_joint 9.716599e-06

Joint ci ratio: 5.599972e-01	ci left: 7.149788e-06	ci right 1.285675e-05	k: 48	n:4950000
Cons ci ratio: 4.825154e-01	ci left: 1.013448e-05	ci right 1.673691e-05	k: 65	n:4950000
KS ci ratio: 6.001244e-02	ci left: 8.353633e-04	ci right 8.872437e-04	k: 4262	n:4950000
SLC2A6   4950000 perm   9591 sec   (516 perm/sec)   p_kst 8.610101e-04   p_cons 1.313131e-05   p_joint 9.696970e-06

Joint ci ratio: 5.599972e-01	ci left: 7.135373e-06	ci right 1.283083e-05	k: 48	n:4960000
Cons ci ratio: 4.825154e-01	ci left: 1.011405e-05	ci right 1.670316e-05	k: 65	n:4960000
KS ci ratio: 5.992813e-02	ci left: 8.360621e-04	ci right 8.879105e-04	k: 4274	n:4960000
SLC2A6   4960000 perm   9628 sec   (515 perm/sec)   p_kst 8.616935e-04   p_cons 1.310484e-05   p_joint 9.677419e-06

Joint ci ratio: 5.543689e-01	ci left: 7.293866e-06	ci right 1.303430e-05	k: 49	n:4970000
Cons ci ratio: 4.789009e-01	ci left: 1.027052e-05	ci right 1.689498e-05	k: 66	n:4970000
KS ci ratio: 5.987214e-02	ci left: 8.359655e-04	ci right 8.877577e-04	k: 4282	n:4970000
SLC2A6   4970000 perm   9664 sec   (514 perm/sec)   p_kst 8.615694e-04   p_cons 1.327968e-05   p_joint 9.859155e-06

Joint ci ratio: 5.543689e-01	ci left: 7.279219e-06	ci right 1.300813e-05	k: 49	n:4980000
Cons ci ratio: 4.789010e-01	ci left: 1.024989e-05	ci right 1.686105e-05	k: 66	n:4980000
KS ci ratio: 5.980236e-02	ci left: 8.362648e-04	ci right 8.880131e-04	k: 4292	n:4980000
SLC2A6   4980000 perm   9702 sec   (513 perm/sec)   p_kst 8.618474e-04   p_cons 1.325301e-05   p_joint 9.839357e-06

Joint ci ratio: 5.543689e-01	ci left: 7.264632e-06	ci right 1.298206e-05	k: 49	n:4990000
Cons ci ratio: 4.789010e-01	ci left: 1.022935e-05	ci right 1.682726e-05	k: 66	n:4990000
KS ci ratio: 5.975367e-02	ci left: 8.359708e-04	ci right 8.876573e-04	k: 4299	n:4990000
SLC2A6   4990000 perm   9739 sec   (512 perm/sec)   p_kst 8.615230e-04   p_cons 1.322645e-05   p_joint 9.819639e-06

Joint ci ratio: 5.543689e-01	ci left: 7.250102e-06	ci right 1.295610e-05	k: 49	n:5000000
Cons ci ratio: 4.789010e-01	ci left: 1.020889e-05	ci right 1.679361e-05	k: 66	n:5000000
KS ci ratio: 5.967737e-02	ci left: 8.364660e-04	ci right 8.881148e-04	k: 4310	n:5000000
SLC2A6   5000000 perm   9776 sec   (511 perm/sec)   p_kst 8.620000e-04   p_cons 1.320000e-05   p_joint 9.800000e-06

Outputting figure to mutsig2_images.part000000000160/SLC2A6.2_1564_5000000_0.000862_1.32e-05_9.8e-06.png
                gene_name: SLC2A6
               theta_stop: 0.55 
                    nperm: 5000000 
                     p_ks: 0.00086 
        ci_ks_bounds_left: 0.00084 
       ci_ks_bounds_right: 0.00089 
                   p_cons: 1.32e-05 
      ci_cons_bounds_left: 1.02e-05 
     ci_cons_bounds_right: 1.68e-05 
                  p_joint: 9.80e-06 
     ci_joint_bounds_left: 7.25e-06 
    ci_joint_bounds_right: 1.30e-05 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000160
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 160 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1530>
Subject: Job 9878190: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1530>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000161> was used as the working directory.
Started at Fri Oct  5 22:57:03 2012
Results reported at Fri Oct  5 22:59:07 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000161.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000161.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 161  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000161.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    171.31 sec.
    Max Memory :      1918 MB
    Max Swap   :      4672 MB

    Max Processes  :         7
    Max Threads    :        55

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
161
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 161
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 161: processing genes 14508 - 14598
Calculating significance of each gene.
Using projection method.
14508	SLC39A10	1
14509	SLC39A11	1
14510	SLC39A12	1
14511	SLC39A13	1
14512	SLC39A14	1.194389e-01
14513	SLC39A2	1
14514	SLC39A3	1
14515	SLC39A4	5.520458e-02
14516	SLC39A5	1
14517	SLC39A6	1
14518	SLC39A7	1
14519	SLC39A8	1
14520	SLC39A9	9.710952e-02
14521	SLC3A1	1
14522	SLC3A2	1
14523	SLC40A1	1
14524	SLC41A1	1
14525	SLC41A2	1
14526	SLC41A3	1
14527	SLC43A1	1
14528	SLC43A2	1
14529	SLC43A3	1.062629e-01
14530	SLC44A1	1
14531	SLC44A2	1
14532	SLC44A3	1.382877e-01
14533	SLC44A4	1
14534	SLC44A5	1
14535	SLC45A1	6.440658e-02
14536	SLC45A2	1
14537	SLC45A3	1
14538	SLC45A4	1.330461e-01
14539	SLC46A1	1
14540	SLC46A2	1
14541	SLC46A3	1
14542	SLC47A1	1
14543	SLC47A2	1
14544	SLC48A1	1
14545	SLC4A1	1
14546	SLC4A10	1
14547	SLC4A11	1.257965e-01
14548	SLC4A1AP	1
14549	SLC4A2	1.569109e-01
14550	SLC4A3	2.041022e-01
14551	SLC4A4	1
14552	SLC4A5	1
14553	SLC4A7	1
14554	SLC4A8	1
14555	SLC4A9	1
14556	SLC5A1	6.904445e-02
14557	SLC5A10	2.460397e-01
14558	SLC5A11	1
14559	SLC5A12	1.488780e-01
14560	SLC5A2	1.167941e-02
14561	SLC5A3	1
14562	SLC5A4	1
14563	SLC5A5	1.753606e-01
14564	SLC5A6	1
14565	SLC5A7	1.880752e-01
14566	SLC5A8	7.935737e-02
14567	SLC5A9	1
14568	SLC6A1	1.612877e-01
14569	SLC6A11	1
14570	SLC6A12	1
14571	SLC6A13	1
14572	SLC6A14	1
14573	SLC6A15	2.460039e-02
14574	SLC6A16	1.692042e-01
14575	SLC6A17	1
14576	SLC6A18	1
14577	SLC6A19	1
14578	SLC6A2	1
14579	SLC6A20	1
14580	SLC6A3	1
14581	SLC6A4	1.942643e-01
14582	SLC6A5	4.434997e-02
14583	SLC6A6	1
14584	SLC6A7	1
14585	SLC6A8	1
14586	SLC6A9	1.077221e-01
14587	SLC7A1	1
14588	SLC7A10	1
14589	SLC7A11	1
14590	SLC7A13	1
14591	SLC7A14	1
14592	SLC7A2	1
14593	SLC7A3	1
14594	SLC7A4	1.052665e-01
14595	SLC7A5	1
14596	SLC7A6	1
14597	SLC7A6OS	1
14598	SLC7A7	1
Done

Running MutSig 2:
Scatter job 161: processing genes 14508 - 14598
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SLC5A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.028188e-02	ci left: 9.307143e-01	ci right 9.404301e-01	k: 9357	n:10000
KS ci ratio: 1.296109e-01	ci left: 7.834394e-02	ci right 8.929994e-02	k: 837	n:10000
SLC5A2   10000 perm   2 sec   (5648 perm/sec)   p_kst 8.370000e-02   p_cons 9.357000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.171244e-03	ci left: 9.338512e-01	ci right 9.406210e-01	k: 18746	n:20000
KS ci ratio: 9.162077e-02	ci left: 7.999553e-02	ci right 8.772596e-02	k: 1676	n:20000
SLC5A2   20000 perm   7 sec   (2837 perm/sec)   p_kst 8.380000e-02   p_cons 9.373000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC5A2.2_2075_20000_0.0838_0.9373_1.png
                gene_name: SLC5A2
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.080 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
SLC6A15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.274819e-02	ci left: 4.469008e-01	ci right 4.665244e-01	k: 4567	n:10000
Cons ci ratio: 5.440970e-02	ci left: 3.323022e-01	ci right 3.509901e-01	k: 3416	n:10000
KS ci ratio: 4.849424e-02	ci left: 3.855000e-01	ci right 4.047611e-01	k: 3951	n:10000
SLC6A15   10000 perm   2 sec   (6177 perm/sec)   p_kst 3.951000e-01   p_cons 3.416000e-01   p_joint 4.567000e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A15.2_2351_10000_0.3951_0.3416_0.4567.png
                gene_name: SLC6A15
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 67 percent done.
SLC6A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.906036e-02	ci left: 8.009530e-01	ci right 8.164667e-01	k: 8088	n:10000
Cons ci ratio: 3.978639e-02	ci left: 4.826547e-01	ci right 5.023497e-01	k: 4925	n:10000
KS ci ratio: 4.716131e-02	ci left: 3.988435e-01	ci right 4.182098e-01	k: 4085	n:10000
SLC6A5   10000 perm   2 sec   (5519 perm/sec)   p_kst 4.085000e-01   p_cons 4.925000e-01   p_joint 8.088000e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A5.2_2458_10000_0.4085_0.4925_0.8088.png
                gene_name: SLC6A5
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000161
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 161 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1727>
Subject: Job 9878201: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1727>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000162> was used as the working directory.
Started at Fri Oct  5 22:57:03 2012
Results reported at Fri Oct  5 22:58:40 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000162.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000162.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 162  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000162.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     81.29 sec.
    Max Memory :      2377 MB
    Max Swap   :      4699 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
162
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 162
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 162: processing genes 14599 - 14689
Calculating significance of each gene.
Using projection method.
14599	SLC7A8	1
14600	SLC7A9	1
14601	SLC8A1	1
14602	SLC8A2	1
14603	SLC8A3	3.480966e-02
14604	SLC9A1	1.587925e-01
14605	SLC9A10	1
14606	SLC9A11	1
14607	SLC9A2	1
14608	SLC9A3	1
14609	SLC9A3R1	1
14610	SLC9A3R2	1
14611	SLC9A4	1
14612	SLC9A5	1
14613	SLC9A6	1
14614	SLC9A7	1
14615	SLC9A8	1
14616	SLC9A9	1
14617	SLCO1A2	1
14618	SLCO1B1	1.644444e-01
14619	SLCO1B3	1
14620	SLCO1C1	1.626209e-01
14621	SLCO2A1	1
14622	SLCO2B1	1.921756e-01
14623	SLCO3A1	1
14624	SLCO4A1	1
14625	SLCO4C1	1
14626	SLCO5A1	2.645038e-01
14627	SLCO6A1	8.873777e-02
14628	SLFN11	1.989105e-01
14629	SLFN12	1
14630	SLFN12L	1
14631	SLFN13	1.779877e-01
14632	SLFN5	2.607503e-01
14633	SLFNL1	2.486694e-02
14634	SLIT1	9.981751e-02
14635	SLIT2	1
14636	SLIT3	1
14637	SLITRK1	1
14638	SLITRK2	1
14639	SLITRK3	1.278026e-01
In gene SLITRK4 the following bins exceed PROBCAP:
    PRAD-CH-5765	categ 6	N = 2518    n = 1	mu =   3.34e-07
14640	SLITRK4	4.880862e-04
14641	SLITRK5	1.518272e-02
14642	SLITRK6	1
14643	SLK	1.847502e-01
14644	SLMAP	1
14645	SLMO1	1
14646	SLMO2	1
14647	SLN	1
14648	SLPI	1
In gene SLTM the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 3168    n = 1	mu =   6.75e-07
14649	SLTM	2.800420e-01
14650	SLU7	1
14651	SLURP1	1
14652	SMAD1	1
14653	SMAD2	1
14654	SMAD3	1.358297e-01
14655	SMAD4	1.751841e-01
14656	SMAD5	1
14657	SMAD6	1
14658	SMAD7	1
14659	SMAD9	1
14660	SMAGP	1
14661	SMAP1	1
14662	SMAP2	1
14663	SMARCA1	9.510560e-02
14664	SMARCA2	1
14665	SMARCA4	1
14666	SMARCA5	1
14667	SMARCAD1	1
14668	SMARCAL1	3.019882e-01
14669	SMARCB1	8.320677e-03
14670	SMARCC1	1
14671	SMARCC2	1
14672	SMARCD1	1
14673	SMARCD2	1
14674	SMARCD3	1
14675	SMARCE1	7.512629e-02
14676	SMC1A	1
14677	SMC1B	1
14678	SMC2	3.967792e-02
14679	SMC3	1
14680	SMC4	1
14681	SMC5	1
14682	SMC6	1
14683	SMCHD1	1
14684	SMCP	1
14685	SMCR7	1
14686	SMCR7L	1
14687	SMCR8	1
14688	SMEK1	1
14689	SMEK2	1
Done

Running MutSig 2:
Scatter job 162: processing genes 14599 - 14689
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SLITRK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.977908e-02	ci left: 1.269892e-01	ci right 1.404250e-01	k: 1336	n:10000
Cons ci ratio: 7.839608e-04	ci left: 9.991235e-01	ci right 9.999381e-01	k: 9997	n:10000
KS ci ratio: 1.734323e-01	ci left: 4.437162e-02	ci right 5.289379e-02	k: 485	n:10000
SLITRK4   10000 perm   2 sec   (4941 perm/sec)   p_kst 4.850000e-02   p_cons 9.997000e-01   p_joint 1.336000e-01

Joint ci ratio: 7.168948e-02	ci left: 1.253682e-01	ci right 1.347397e-01	k: 2600	n:20000
Cons ci ratio: 4.801120e-04	ci left: 9.994167e-01	ci right 9.999188e-01	k: 19995	n:20000
KS ci ratio: 1.250922e-01	ci left: 4.386539e-02	ci right 4.976727e-02	k: 935	n:20000
SLITRK4   20000 perm   6 sec   (3175 perm/sec)   p_kst 4.675000e-02   p_cons 9.997500e-01   p_joint 1.300000e-01

Joint ci ratio: 6.282427e-02	ci left: 1.112464e-01	ci right 1.184951e-01	k: 3445	n:30000
Cons ci ratio: 3.695996e-04	ci left: 9.995193e-01	ci right 9.999062e-01	k: 29993	n:30000
KS ci ratio: 1.025218e-01	ci left: 4.407958e-02	ci right 4.887540e-02	k: 1393	n:30000
SLITRK4   30000 perm   8 sec   (3612 perm/sec)   p_kst 4.643333e-02   p_cons 9.997667e-01   p_joint 1.148333e-01

Joint ci ratio: 4.422792e-02	ci left: 1.605072e-01	ci right 1.677916e-01	k: 6565	n:40000
Cons ci ratio: 2.940147e-04	ci left: 9.996060e-01	ci right 9.999137e-01	k: 39992	n:40000
KS ci ratio: 8.938523e-02	ci left: 4.382080e-02	ci right 4.794545e-02	k: 1834	n:40000
SLITRK4   40000 perm   10 sec   (3840 perm/sec)   p_kst 4.585000e-02   p_cons 9.998000e-01   p_joint 1.641250e-01

Outputting figure to mutsig2_images.part000000000162/SLITRK4.3_2518_40000_0.04585_0.9998_0.16412.png
                gene_name: SLITRK4
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.048 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 17 percent done.
SLC8A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.741570e-02	ci left: 6.621957e-01	ci right 6.807043e-01	k: 6715	n:10000
KS ci ratio: 5.534169e-02	ci left: 3.247555e-01	ci right 3.433413e-01	k: 3340	n:10000
SLC8A3   10000 perm   2 sec   (6503 perm/sec)   p_kst 3.340000e-01   p_cons 6.715000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000162/SLC8A3.2_2923_10000_0.334_0.6715_1.png
                gene_name: SLC8A3
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
SLIT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.380780e-02	ci left: 2.651762e-01	ci right 2.827556e-01	k: 2739	n:10000
Cons ci ratio: 2.849757e-02	ci left: 6.447840e-01	ci right 6.635261e-01	k: 6542	n:10000
KS ci ratio: 6.956496e-02	ci left: 2.325450e-01	ci right 2.494061e-01	k: 2409	n:10000
SLIT1   10000 perm   2 sec   (5738 perm/sec)   p_kst 2.409000e-01   p_cons 6.542000e-01   p_joint 2.739000e-01

Outputting figure to mutsig2_images.part000000000162/SLIT1.2_4753_10000_0.2409_0.6542_0.2739.png
                gene_name: SLIT1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 50 percent done.
SLITRK5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.131539e-02	ci left: 7.634461e-01	ci right 7.799953e-01	k: 7718	n:10000
KS ci ratio: 3.104511e-02	ci left: 6.048784e-01	ci right 6.240549e-01	k: 6145	n:10000
SLITRK5   10000 perm   2 sec   (6281 perm/sec)   p_kst 6.145000e-01   p_cons 7.718000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000162/SLITRK5.2_2881_10000_0.6145_0.7718_1.png
                gene_name: SLITRK5
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
SMARCB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.199064e-02	ci left: 9.088480e-01	ci right 9.199092e-01	k: 9145	n:10000
KS ci ratio: 5.564151e-02	ci left: 3.223729e-01	ci right 3.409253e-01	k: 3316	n:10000
SMARCB1   10000 perm   1 sec   (7671 perm/sec)   p_kst 3.316000e-01   p_cons 9.145000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000162/SMARCB1.2_1194_10000_0.3316_0.9145_1.png
                gene_name: SMARCB1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
SMC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.296339e-02	ci left: 1.748744e-01	ci right 1.901110e-01	k: 1824	n:10000
Cons ci ratio: 6.677346e-02	ci left: 2.476661e-01	ci right 2.648761e-01	k: 2562	n:10000
KS ci ratio: 1.699685e-01	ci left: 4.619368e-02	ci right 5.487054e-02	k: 504	n:10000
SMC2   10000 perm   2 sec   (6024 perm/sec)   p_kst 5.040000e-02   p_cons 2.562000e-01   p_joint 1.824000e-01

Joint ci ratio: 3.576564e-02	ci left: 3.684834e-01	ci right 3.819529e-01	k: 7504	n:20000
Cons ci ratio: 4.757194e-02	ci left: 2.473831e-01	ci right 2.594887e-01	k: 5068	n:20000
KS ci ratio: 1.178121e-01	ci left: 4.935201e-02	ci right 5.557892e-02	k: 1048	n:20000
SMC2   20000 perm   4 sec   (5388 perm/sec)   p_kst 5.240000e-02   p_cons 2.534000e-01   p_joint 3.752000e-01

Joint ci ratio: 4.045136e-02	ci left: 2.335540e-01	ci right 2.432300e-01	k: 7151	n:30000
Cons ci ratio: 3.880996e-02	ci left: 2.488166e-01	ci right 2.586978e-01	k: 7612	n:30000
KS ci ratio: 9.732508e-02	ci left: 4.879794e-02	ci right 5.382274e-02	k: 1538	n:30000
SMC2   30000 perm   6 sec   (5150 perm/sec)   p_kst 5.126667e-02   p_cons 2.537333e-01   p_joint 2.383667e-01

Outputting figure to mutsig2_images.part000000000162/SMC2.2_3690_30000_0.051267_0.25373_0.23837.png
                gene_name: SMC2
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000162
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 162 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1543>
Subject: Job 9878207: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1543>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000163> was used as the working directory.
Started at Fri Oct  5 22:57:42 2012
Results reported at Fri Oct  5 22:59:42 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000163.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000163.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 163  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000163.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    134.41 sec.
    Max Memory :      1549 MB
    Max Swap   :      4330 MB

    Max Processes  :         7
    Max Threads    :        55

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
163
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 163
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 163: processing genes 14690 - 14779
Calculating significance of each gene.
Using projection method.
14690	SMG1	1
14691	SMG5	1
14692	SMG6	1
14693	SMG7	3.190082e-01
14694	SMNDC1	1
14695	SMO	1
14696	SMOC1	1
14697	SMOC2	1
14698	SMOX	1
14699	SMPD1	1
14700	SMPD2	1
14701	SMPD3	2.438722e-01
14702	SMPD4	1
14703	SMPDL3A	4.254142e-02
14704	SMPDL3B	1
14705	SMPX	1
14706	SMR3A	3.911988e-02
14707	SMR3B	1
14708	SMS	1
14709	SMTN	1
14710	SMTNL1	1
14711	SMTNL2	1
14712	SMU1	1
14713	SMUG1	1
14714	SMURF1	1
14715	SMURF2	1
14716	SMYD1	1
14717	SMYD2	1
14718	SMYD3	1
14719	SMYD4	1
14720	SMYD5	1
14721	SNAI1	1
14722	SNAI2	1
14723	SNAI3	1
14724	SNAP23	1
14725	SNAP25	5.099143e-02
14726	SNAP29	1
14727	SNAP47	1
14728	SNAP91	1
14729	SNAPC1	1
14730	SNAPC2	1
14731	SNAPC3	1
14732	SNAPC4	1
14733	SNAPC5	1
14734	SNAPIN	1
14735	SNCA	1
14736	SNCAIP	1.919604e-02
14737	SNCB	1
14738	SNCG	1
14739	SND1	1
14740	SNED1	1
14741	SNF8	1
14742	SNHG3-RCC1	1
14743	SNIP1	1
14744	SNN	1
14745	SNPH	1
14746	SNRK	1
14747	SNRNP200	5.751938e-01
14748	SNRNP25	1
14749	SNRNP27	1.117264e-02
14750	SNRNP35	1
14751	SNRNP40	1
14752	SNRNP48	1
14753	SNRNP70	1
14754	SNRPA	1
14755	SNRPA1	1
14756	SNRPB	1
14757	SNRPB2	1
14758	SNRPC	1
14759	SNRPD1	1
14760	SNRPD2	1
14761	SNRPD3	1
14762	SNRPE	1
14763	SNRPF	1
14764	SNRPG	1
In gene SNRPN the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 751     n = 1	mu =   9.08e-07
14765	SNRPN	8.192855e-02
14766	SNTA1	1
14767	SNTB1	2.988304e-02
14768	SNTB2	1
14769	SNTG1	1
14770	SNTG2	1.039128e-02
14771	SNTN	1
14772	SNUPN	1
14773	SNURF	1
14774	SNW1	1
14775	SNX1	1
14776	SNX10	1
14777	SNX11	1
14778	SNX12	1
14779	SNX13	1
Done

Running MutSig 2:
Scatter job 163: processing genes 14690 - 14779
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SNCAIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.370417e-02	ci left: 5.651401e-01	ci right 5.846162e-01	k: 5749	n:10000
KS ci ratio: 1.767305e-02	ci left: 8.236106e-01	ci right 8.383961e-01	k: 8311	n:10000
SNCAIP   10000 perm   2 sec   (5206 perm/sec)   p_kst 8.311000e-01   p_cons 5.749000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000163/SNCAIP.2_2800_10000_0.8311_0.5749_1.png
                gene_name: SNCAIP
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
SNTG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.749028e-02	ci left: 8.265603e-01	ci right 8.412446e-01	k: 8340	n:10000
Cons ci ratio: 8.015541e-02	ci left: 1.852067e-01	ci right 2.007725e-01	k: 1929	n:10000
KS ci ratio: 8.219310e-02	ci left: 1.776288e-01	ci right 1.929550e-01	k: 1852	n:10000
SNTG2   10000 perm   2 sec   (5885 perm/sec)   p_kst 1.852000e-01   p_cons 1.929000e-01   p_joint 8.340000e-01

Outputting figure to mutsig2_images.part000000000163/SNTG2.2_1688_10000_0.1852_0.1929_0.834.png
                gene_name: SNTG2
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000163
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 163 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1730>
Subject: Job 9878217: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1730>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000164> was used as the working directory.
Started at Fri Oct  5 22:57:42 2012
Results reported at Sat Oct  6 01:44:44 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000164.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000164.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 164  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000164.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  10057.28 sec.
    Max Memory :      2014 MB
    Max Swap   :      4740 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
164
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 164
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 164: processing genes 14780 - 14870
Calculating significance of each gene.
Using projection method.
14780	SNX14	1
14781	SNX15	1.175354e-01
14782	SNX16	1
14783	SNX17	1
14784	SNX18	1.680299e-01
14785	SNX19	1
14786	SNX2	1
14787	SNX20	1
14788	SNX21	1
14789	SNX22	1
14790	SNX24	1
14791	SNX25	1
14792	SNX27	1
14793	SNX29	1
14794	SNX3	1
14795	SNX30	1
14796	SNX31	8.552286e-02
14797	SNX32	1
14798	SNX33	1
14799	SNX4	1
14800	SNX5	1
14801	SNX6	1
14802	SNX7	1
14803	SNX8	1
14804	SNX9	1
14805	SOAT1	1
14806	SOAT2	1
14807	SOBP	1
14808	SOCS1	1
14809	SOCS2	1
14810	SOCS3	1
14811	SOCS4	1
14812	SOCS5	1
14813	SOCS6	1
14814	SOCS7	1
14815	SOD1	1
14816	SOD2	1
14817	SOD3	5.612295e-03
14818	SOHLH1	1
14819	SOHLH2	1
14820	SOLH	1
14821	SON	1
14822	SORBS1	8.332727e-02
14823	SORBS2	1
14824	SORBS3	1
14825	SORCS1	1
14826	SORCS2	9.423323e-02
14827	SORCS3	2.409140e-01
14828	SORD	1
14829	SORL1	1
14830	SORT1	1
14831	SOS1	1
14832	SOS2	1
14833	SOST	1
14834	SOSTDC1	1
14835	SOX1	1
14836	SOX10	1
14837	SOX11	1
14838	SOX12	1
14839	SOX13	1
14840	SOX14	1
14841	SOX15	1
14842	SOX17	8.042600e-02
14843	SOX18	1
14844	SOX2	1
14845	SOX21	1
14846	SOX3	1
14847	SOX30	1.751951e-01
14848	SOX4	1
14849	SOX5	1
14850	SOX6	1
14851	SOX7	1
14852	SOX8	1
14853	SOX9	1
14854	SP1	1.147774e-01
14855	SP100	1
14856	SP110	1
14857	SP140	1
14858	SP140L	1.216661e-01
14859	SP2	1
14860	SP3	1
14861	SP4	1.559369e-01
14862	SP5	1
14863	SP6	1
14864	SP7	1
14865	SP8	1.885738e-02
14866	SPA17	1
14867	SPACA1	1
14868	SPACA3	1
14869	SPACA4	1
14870	SPAG1	1
Done

Running MutSig 2:
Scatter job 164: processing genes 14780 - 14870
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SORBS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 3.154520e-02	ci left: 5.972468e-01	ci right 6.164909e-01	k: 6069	n:10000
KS ci ratio: 1.752551e+00	ci left: 1.089969e-04	ci right 1.023839e-03	k: 4	n:10000
SORBS1   10000 perm   2 sec   (5906 perm/sec)   p_kst 4.000000e-04   p_cons 6.069000e-01   p_joint 0

Joint ci ratio: 1.385617e+00	ci left: 1.407294e-04	ci right 7.210000e-04	k: 7	n:20000
Cons ci ratio: 2.236782e-02	ci left: 5.987868e-01	ci right 6.123825e-01	k: 12112	n:20000
KS ci ratio: 1.385617e+00	ci left: 1.407294e-04	ci right 7.210000e-04	k: 7	n:20000
SORBS1   20000 perm   5 sec   (3669 perm/sec)   p_kst 3.500000e-04   p_cons 6.056000e-01   p_joint 3.500000e-04

Joint ci ratio: 1.306449e+00	ci left: 1.151345e-04	ci right 5.253717e-04	k: 8	n:30000
Cons ci ratio: 1.820628e-02	ci left: 6.015466e-01	ci right 6.126327e-01	k: 18213	n:30000
KS ci ratio: 1.306449e+00	ci left: 1.151345e-04	ci right 5.253717e-04	k: 8	n:30000
SORBS1   30000 perm   8 sec   (3986 perm/sec)   p_kst 2.666667e-04   p_cons 6.071000e-01   p_joint 2.666667e-04

Joint ci ratio: 1.047468e+00	ci left: 1.730598e-04	ci right 5.556958e-04	k: 13	n:40000
Cons ci ratio: 1.581768e-02	ci left: 6.007655e-01	ci right 6.103691e-01	k: 24223	n:40000
KS ci ratio: 1.047468e+00	ci left: 1.730598e-04	ci right 5.556958e-04	k: 13	n:40000
SORBS1   40000 perm   10 sec   (4148 perm/sec)   p_kst 3.250000e-04   p_cons 6.055750e-01   p_joint 3.250000e-04

Joint ci ratio: 9.798334e-01	ci left: 1.679171e-04	ci right 4.947562e-04	k: 15	n:50000
Cons ci ratio: 1.411100e-02	ci left: 6.025225e-01	ci right 6.111051e-01	k: 30341	n:50000
KS ci ratio: 9.798334e-01	ci left: 1.679171e-04	ci right 4.947562e-04	k: 15	n:50000
SORBS1   50000 perm   12 sec   (4187 perm/sec)   p_kst 3.000000e-04   p_cons 6.068200e-01   p_joint 3.000000e-04

Joint ci ratio: 8.763852e-01	ci left: 1.906644e-04	ci right 4.944703e-04	k: 19	n:60000
Cons ci ratio: 1.283267e-02	ci left: 6.047146e-01	ci right 6.125415e-01	k: 36518	n:60000
KS ci ratio: 8.763852e-01	ci left: 1.906644e-04	ci right 4.944703e-04	k: 19	n:60000
SORBS1   60000 perm   14 sec   (4224 perm/sec)   p_kst 3.166667e-04   p_cons 6.086333e-01   p_joint 3.166667e-04

Joint ci ratio: 1.012024e+00	ci left: 1.093460e-04	ci right 3.355433e-04	k: 14	n:70000
Cons ci ratio: 1.189800e-02	ci left: 6.043147e-01	ci right 6.115621e-01	k: 42556	n:70000
KS ci ratio: 8.000238e-01	ci left: 2.082971e-04	ci right 4.929779e-04	k: 23	n:70000
SORBS1   70000 perm   17 sec   (4235 perm/sec)   p_kst 3.285714e-04   p_cons 6.079429e-01   p_joint 2.000000e-04

Joint ci ratio: 9.798959e-01	ci left: 1.049460e-04	ci right 3.092339e-04	k: 15	n:80000
Cons ci ratio: 1.115949e-02	ci left: 6.032674e-01	ci right 6.100498e-01	k: 48533	n:80000
KS ci ratio: 7.542723e-01	ci left: 2.123114e-04	ci right 4.761643e-04	k: 26	n:80000
SORBS1   80000 perm   19 sec   (4224 perm/sec)   p_kst 3.250000e-04   p_cons 6.066625e-01   p_joint 1.875000e-04

Joint ci ratio: 8.992098e-01	ci left: 1.185368e-04	ci right 3.160679e-04	k: 18	n:90000
Cons ci ratio: 1.053884e-02	ci left: 6.026652e-01	ci right 6.090613e-01	k: 54528	n:90000
KS ci ratio: 7.039276e-01	ci left: 2.249095e-04	ci right 4.758201e-04	k: 30	n:90000
SORBS1   90000 perm   21 sec   (4201 perm/sec)   p_kst 3.333333e-04   p_cons 6.058667e-01   p_joint 2.000000e-04

Joint ci ratio: 8.764466e-01	ci left: 1.143962e-04	ci right 2.966927e-04	k: 19	n:100000
Cons ci ratio: 9.983524e-03	ci left: 6.035242e-01	ci right 6.095897e-01	k: 60656	n:100000
KS ci ratio: 6.928503e-01	ci left: 2.106394e-04	ci right 4.399916e-04	k: 31	n:100000
SORBS1   100000 perm   24 sec   (4173 perm/sec)   p_kst 3.100000e-04   p_cons 6.065600e-01   p_joint 1.900000e-04

Joint ci ratio: 6.443327e-01	ci left: 2.292280e-04	ci right 4.530549e-04	k: 36	n:110000
Cons ci ratio: 9.512509e-03	ci left: 6.039880e-01	ci right 6.097700e-01	k: 66757	n:110000
KS ci ratio: 6.443327e-01	ci left: 2.292280e-04	ci right 4.530549e-04	k: 36	n:110000
SORBS1   110000 perm   27 sec   (4139 perm/sec)   p_kst 3.272727e-04   p_cons 6.068818e-01   p_joint 3.272727e-04

Joint ci ratio: 6.358046e-01	ci left: 2.171041e-04	ci right 4.249721e-04	k: 37	n:120000
Cons ci ratio: 9.108467e-03	ci left: 6.040630e-01	ci right 6.095985e-01	k: 72820	n:120000
KS ci ratio: 6.358046e-01	ci left: 2.171041e-04	ci right 4.249721e-04	k: 37	n:120000
SORBS1   120000 perm   29 sec   (4093 perm/sec)   p_kst 3.083333e-04   p_cons 6.068333e-01   p_joint 3.083333e-04

Joint ci ratio: 6.047691e-01	ci left: 2.263347e-04	ci right 4.278308e-04	k: 41	n:130000
Cons ci ratio: 8.756687e-03	ci left: 6.038690e-01	ci right 6.091878e-01	k: 78849	n:130000
KS ci ratio: 6.047691e-01	ci left: 2.263347e-04	ci right 4.278308e-04	k: 41	n:130000
SORBS1   130000 perm   32 sec   (4050 perm/sec)   p_kst 3.153846e-04   p_cons 6.065308e-01   p_joint 3.153846e-04

Joint ci ratio: 5.842631e-01	ci left: 2.283695e-04	ci right 4.218912e-04	k: 44	n:140000
Cons ci ratio: 8.442998e-03	ci left: 6.036921e-01	ci right 6.088178e-01	k: 84876	n:140000
KS ci ratio: 5.842631e-01	ci left: 2.283695e-04	ci right 4.218912e-04	k: 44	n:140000
SORBS1   140000 perm   35 sec   (3981 perm/sec)   p_kst 3.142857e-04   p_cons 6.062571e-01   p_joint 3.142857e-04

Joint ci ratio: 5.778819e-01	ci left: 2.188302e-04	ci right 4.014032e-04	k: 45	n:150000
Cons ci ratio: 8.154389e-03	ci left: 6.039156e-01	ci right 6.088669e-01	k: 90959	n:150000
KS ci ratio: 5.778819e-01	ci left: 2.188302e-04	ci right 4.014032e-04	k: 45	n:150000
SORBS1   150000 perm   38 sec   (3923 perm/sec)   p_kst 3.000000e-04   p_cons 6.063933e-01   p_joint 3.000000e-04

Joint ci ratio: 5.542834e-01	ci left: 2.265738e-04	ci right 4.048588e-04	k: 49	n:160000
Cons ci ratio: 7.894002e-03	ci left: 6.040825e-01	ci right 6.088762e-01	k: 97037	n:160000
KS ci ratio: 5.542834e-01	ci left: 2.265738e-04	ci right 4.048588e-04	k: 49	n:160000
SORBS1   160000 perm   41 sec   (3878 perm/sec)   p_kst 3.062500e-04   p_cons 6.064812e-01   p_joint 3.062500e-04

Joint ci ratio: 5.488258e-01	ci left: 2.183074e-04	ci right 3.877393e-04	k: 50	n:170000
Cons ci ratio: 7.662729e-03	ci left: 6.038786e-01	ci right 6.085296e-01	k: 103055	n:170000
KS ci ratio: 5.488258e-01	ci left: 2.183074e-04	ci right 3.877393e-04	k: 50	n:170000
SORBS1   170000 perm   44 sec   (3832 perm/sec)   p_kst 2.941176e-04   p_cons 6.062059e-01   p_joint 2.941176e-04

Joint ci ratio: 5.333629e-01	ci left: 2.205666e-04	ci right 3.851231e-04	k: 53	n:180000
Cons ci ratio: 7.449181e-03	ci left: 6.037938e-01	ci right 6.083139e-01	k: 109090	n:180000
KS ci ratio: 5.333629e-01	ci left: 2.205666e-04	ci right 3.851231e-04	k: 53	n:180000
SORBS1   180000 perm   48 sec   (3786 perm/sec)   p_kst 2.944444e-04   p_cons 6.060556e-01   p_joint 2.944444e-04

Joint ci ratio: 5.284948e-01	ci left: 2.135147e-04	ci right 3.708170e-04	k: 54	n:190000
Cons ci ratio: 7.244954e-03	ci left: 6.042201e-01	ci right 6.086188e-01	k: 115220	n:190000
KS ci ratio: 5.284948e-01	ci left: 2.135147e-04	ci right 3.708170e-04	k: 54	n:190000
SORBS1   190000 perm   51 sec   (3739 perm/sec)   p_kst 2.842105e-04   p_cons 6.064211e-01   p_joint 2.842105e-04

Joint ci ratio: 5.146453e-01	ci left: 2.158631e-04	ci right 3.692350e-04	k: 57	n:200000
Cons ci ratio: 7.064484e-03	ci left: 6.040747e-01	ci right 6.083622e-01	k: 121244	n:200000
KS ci ratio: 5.146453e-01	ci left: 2.158631e-04	ci right 3.692350e-04	k: 57	n:200000
SORBS1   200000 perm   54 sec   (3695 perm/sec)   p_kst 2.850000e-04   p_cons 6.062200e-01   p_joint 2.850000e-04

Joint ci ratio: 5.018305e-01	ci left: 2.180370e-04	ci right 3.677558e-04	k: 60	n:210000
Cons ci ratio: 6.897685e-03	ci left: 6.038872e-01	ci right 6.080718e-01	k: 127256	n:210000
KS ci ratio: 5.018305e-01	ci left: 2.180370e-04	ci right 3.677558e-04	k: 60	n:210000
SORBS1   210000 perm   58 sec   (3652 perm/sec)   p_kst 2.857143e-04   p_cons 6.059810e-01   p_joint 2.857143e-04

Joint ci ratio: 4.899276e-01	ci left: 2.200565e-04	ci right 3.663688e-04	k: 63	n:220000
Cons ci ratio: 6.743128e-03	ci left: 6.036497e-01	ci right 6.077384e-01	k: 133253	n:220000
KS ci ratio: 4.899276e-01	ci left: 2.200565e-04	ci right 3.663688e-04	k: 63	n:220000
SORBS1   220000 perm   61 sec   (3609 perm/sec)   p_kst 2.863636e-04   p_cons 6.056955e-01   p_joint 2.863636e-04

Joint ci ratio: 4.824484e-01	ci left: 2.181180e-04	ci right 3.601940e-04	k: 65	n:230000
Cons ci ratio: 6.595328e-03	ci left: 6.036645e-01	ci right 6.076633e-01	k: 139303	n:230000
KS ci ratio: 4.824484e-01	ci left: 2.181180e-04	ci right 3.601940e-04	k: 65	n:230000
SORBS1   230000 perm   64 sec   (3570 perm/sec)   p_kst 2.826087e-04   p_cons 6.056652e-01   p_joint 2.826087e-04

Joint ci ratio: 4.684603e-01	ci left: 2.236988e-04	ci right 3.638358e-04	k: 69	n:240000
Cons ci ratio: 6.459655e-03	ci left: 6.034704e-01	ci right 6.073854e-01	k: 145303	n:240000
KS ci ratio: 4.684603e-01	ci left: 2.236988e-04	ci right 3.638358e-04	k: 69	n:240000
SORBS1   240000 perm   68 sec   (3522 perm/sec)   p_kst 2.875000e-04   p_cons 6.054292e-01   p_joint 2.875000e-04

Joint ci ratio: 4.587334e-01	ci left: 2.253489e-04	ci right 3.626748e-04	k: 72	n:250000
Cons ci ratio: 6.328419e-03	ci left: 6.035649e-01	ci right 6.074006e-01	k: 151371	n:250000
KS ci ratio: 4.587334e-01	ci left: 2.253489e-04	ci right 3.626748e-04	k: 72	n:250000
SORBS1   250000 perm   72 sec   (3482 perm/sec)   p_kst 2.880000e-04   p_cons 6.054840e-01   p_joint 2.880000e-04

Joint ci ratio: 4.495883e-01	ci left: 2.268998e-04	ci right 3.615758e-04	k: 75	n:260000
Cons ci ratio: 6.205518e-03	ci left: 6.036029e-01	ci right 6.073640e-01	k: 157426	n:260000
KS ci ratio: 4.495883e-01	ci left: 2.268998e-04	ci right 3.615758e-04	k: 75	n:260000
SORBS1   260000 perm   76 sec   (3442 perm/sec)   p_kst 2.884615e-04   p_cons 6.054846e-01   p_joint 2.884615e-04

Joint ci ratio: 4.437877e-01	ci left: 2.250700e-04	ci right 3.564199e-04	k: 77	n:270000
Cons ci ratio: 6.090738e-03	ci left: 6.035423e-01	ci right 6.072332e-01	k: 163455	n:270000
KS ci ratio: 4.437877e-01	ci left: 2.250700e-04	ci right 3.564199e-04	k: 77	n:270000
SORBS1   270000 perm   79 sec   (3402 perm/sec)   p_kst 2.851852e-04   p_cons 6.053889e-01   p_joint 2.851852e-04

Joint ci ratio: 4.409714e-01	ci left: 2.202052e-04	ci right 3.476577e-04	k: 78	n:280000
Cons ci ratio: 5.981474e-03	ci left: 6.035367e-01	ci right 6.071611e-01	k: 169498	n:280000
KS ci ratio: 4.409714e-01	ci left: 2.202052e-04	ci right 3.476577e-04	k: 78	n:280000
SORBS1   280000 perm   83 sec   (3365 perm/sec)   p_kst 2.785714e-04   p_cons 6.053500e-01   p_joint 2.785714e-04

Joint ci ratio: 4.226411e-01	ci left: 2.341271e-04	ci right 3.624144e-04	k: 85	n:290000
Cons ci ratio: 5.876656e-03	ci left: 6.036321e-01	ci right 6.071933e-01	k: 175570	n:290000
KS ci ratio: 4.226411e-01	ci left: 2.341271e-04	ci right 3.624144e-04	k: 85	n:290000
SORBS1   290000 perm   87 sec   (3327 perm/sec)   p_kst 2.931034e-04   p_cons 6.054138e-01   p_joint 2.931034e-04

Joint ci ratio: 4.202065e-01	ci left: 2.293025e-04	ci right 3.540191e-04	k: 86	n:300000
Cons ci ratio: 5.778654e-03	ci left: 6.035983e-01	ci right 6.070997e-01	k: 181605	n:300000
KS ci ratio: 4.202065e-01	ci left: 2.293025e-04	ci right 3.540191e-04	k: 86	n:300000
SORBS1   300000 perm   91 sec   (3290 perm/sec)   p_kst 2.866667e-04   p_cons 6.053500e-01   p_joint 2.866667e-04

Joint ci ratio: 4.131436e-01	ci left: 2.305684e-04	ci right 3.532856e-04	k: 89	n:310000
Cons ci ratio: 5.682058e-03	ci left: 6.038480e-01	ci right 6.072920e-01	k: 187727	n:310000
KS ci ratio: 4.131436e-01	ci left: 2.305684e-04	ci right 3.532856e-04	k: 89	n:310000
SORBS1   310000 perm   95 sec   (3250 perm/sec)   p_kst 2.870968e-04   p_cons 6.055710e-01   p_joint 2.870968e-04

Joint ci ratio: 4.042571e-01	ci left: 2.345781e-04	ci right 3.560236e-04	k: 93	n:320000
Cons ci ratio: 5.591390e-03	ci left: 6.039761e-01	ci right 6.073657e-01	k: 193815	n:320000
KS ci ratio: 4.042571e-01	ci left: 2.345781e-04	ci right 3.560236e-04	k: 93	n:320000
SORBS1   320000 perm   100 sec   (3215 perm/sec)   p_kst 2.906250e-04   p_cons 6.056719e-01   p_joint 2.906250e-04

Joint ci ratio: 3.979566e-01	ci left: 2.356435e-04	ci right 3.552384e-04	k: 96	n:330000
Cons ci ratio: 5.505487e-03	ci left: 6.040484e-01	ci right 6.073861e-01	k: 199887	n:330000
KS ci ratio: 3.979566e-01	ci left: 2.356435e-04	ci right 3.552384e-04	k: 96	n:330000
SORBS1   330000 perm   104 sec   (3182 perm/sec)   p_kst 2.909091e-04   p_cons 6.057182e-01   p_joint 2.909091e-04

Joint ci ratio: 3.919418e-01	ci left: 2.366600e-04	ci right 3.544857e-04	k: 99	n:340000
Cons ci ratio: 5.424695e-03	ci left: 6.040049e-01	ci right 6.072933e-01	k: 205921	n:340000
KS ci ratio: 3.919418e-01	ci left: 2.366600e-04	ci right 3.544857e-04	k: 99	n:340000
SORBS1   340000 perm   108 sec   (3147 perm/sec)   p_kst 2.911765e-04   p_cons 6.056500e-01   p_joint 2.911765e-04

Joint ci ratio: 3.861917e-01	ci left: 2.376312e-04	ci right 3.537634e-04	k: 102	n:350000
Cons ci ratio: 5.344640e-03	ci left: 6.042073e-01	ci right 6.074481e-01	k: 212040	n:350000
KS ci ratio: 3.861917e-01	ci left: 2.376312e-04	ci right 3.537634e-04	k: 102	n:350000
SORBS1   350000 perm   112 sec   (3116 perm/sec)   p_kst 2.914286e-04   p_cons 6.058286e-01   p_joint 2.914286e-04

Joint ci ratio: 3.824965e-01	ci left: 2.360491e-04	ci right 3.500265e-04	k: 104	n:360000
Cons ci ratio: 5.270906e-03	ci left: 6.041375e-01	ci right 6.073330e-01	k: 218065	n:360000
KS ci ratio: 3.824965e-01	ci left: 2.360491e-04	ci right 3.500265e-04	k: 104	n:360000
SORBS1   360000 perm   117 sec   (3086 perm/sec)   p_kst 2.888889e-04   p_cons 6.057361e-01   p_joint 2.888889e-04

Joint ci ratio: 3.737013e-01	ci left: 2.418989e-04	ci right 3.553580e-04	k: 109	n:370000
Cons ci ratio: 5.196966e-03	ci left: 6.043639e-01	ci right 6.075156e-01	k: 224198	n:370000
KS ci ratio: 3.737013e-01	ci left: 2.418989e-04	ci right 3.553580e-04	k: 109	n:370000
SORBS1   370000 perm   121 sec   (3054 perm/sec)   p_kst 2.945946e-04   p_cons 6.059405e-01   p_joint 2.945946e-04

Joint ci ratio: 3.670861e-01	ci left: 2.450798e-04	ci right 3.575081e-04	k: 113	n:380000
Cons ci ratio: 5.129440e-03	ci left: 6.042626e-01	ci right 6.073727e-01	k: 230211	n:380000
KS ci ratio: 3.670861e-01	ci left: 2.450798e-04	ci right 3.575081e-04	k: 113	n:380000
SORBS1   380000 perm   126 sec   (3023 perm/sec)   p_kst 2.973684e-04   p_cons 6.058184e-01   p_joint 2.973684e-04

Joint ci ratio: 3.654875e-01	ci left: 2.411237e-04	ci right 3.511405e-04	k: 114	n:390000
Cons ci ratio: 5.064154e-03	ci left: 6.041975e-01	ci right 6.072676e-01	k: 236236	n:390000
KS ci ratio: 3.654875e-01	ci left: 2.411237e-04	ci right 3.511405e-04	k: 114	n:390000
SORBS1   390000 perm   130 sec   (2991 perm/sec)   p_kst 2.923077e-04   p_cons 6.057333e-01   p_joint 2.923077e-04

Joint ci ratio: 3.623507e-01	ci left: 2.396383e-04	ci right 3.478173e-04	k: 116	n:400000
Cons ci ratio: 5.001717e-03	ci left: 6.040960e-01	ci right 6.071275e-01	k: 242245	n:400000
KS ci ratio: 3.623507e-01	ci left: 2.396383e-04	ci right 3.478173e-04	k: 116	n:400000
SORBS1   400000 perm   135 sec   (2961 perm/sec)   p_kst 2.900000e-04   p_cons 6.056125e-01   p_joint 2.900000e-04

Joint ci ratio: 3.608129e-01	ci left: 2.360109e-04	ci right 3.419938e-04	k: 117	n:410000
Cons ci ratio: 4.940044e-03	ci left: 6.041436e-01	ci right 6.071379e-01	k: 248313	n:410000
KS ci ratio: 3.608129e-01	ci left: 2.360109e-04	ci right 3.419938e-04	k: 117	n:410000
SORBS1   410000 perm   140 sec   (2932 perm/sec)   p_kst 2.853659e-04   p_cons 6.056415e-01   p_joint 2.853659e-04

Joint ci ratio: 3.534023e-01	ci left: 2.412286e-04	ci right 3.468192e-04	k: 122	n:420000
Cons ci ratio: 4.881061e-03	ci left: 6.041439e-01	ci right 6.071023e-01	k: 254362	n:420000
KS ci ratio: 3.534023e-01	ci left: 2.412286e-04	ci right 3.468192e-04	k: 122	n:420000
SORBS1   420000 perm   145 sec   (2901 perm/sec)   p_kst 2.904762e-04   p_cons 6.056238e-01   p_joint 2.904762e-04

Joint ci ratio: 3.505641e-01	ci left: 2.398585e-04	ci right 3.438145e-04	k: 124	n:430000
Cons ci ratio: 4.824469e-03	ci left: 6.041118e-01	ci right 6.070356e-01	k: 260397	n:430000
KS ci ratio: 3.505641e-01	ci left: 2.398585e-04	ci right 3.438145e-04	k: 124	n:430000
SORBS1   430000 perm   150 sec   (2871 perm/sec)   p_kst 2.883721e-04   p_cons 6.055744e-01   p_joint 2.883721e-04

Joint ci ratio: 3.450858e-01	ci left: 2.427041e-04	ci right 3.458824e-04	k: 128	n:440000
Cons ci ratio: 4.769597e-03	ci left: 6.041018e-01	ci right 6.069923e-01	k: 266441	n:440000
KS ci ratio: 3.450858e-01	ci left: 2.427041e-04	ci right 3.458824e-04	k: 128	n:440000
SORBS1   440000 perm   155 sec   (2843 perm/sec)   p_kst 2.909091e-04   p_cons 6.055477e-01   p_joint 2.909091e-04

Joint ci ratio: 3.398565e-01	ci left: 2.454352e-04	ci right 3.478464e-04	k: 132	n:450000
Cons ci ratio: 4.715635e-03	ci left: 6.041859e-01	ci right 6.070439e-01	k: 272527	n:450000
KS ci ratio: 3.398565e-01	ci left: 2.454352e-04	ci right 3.478464e-04	k: 132	n:450000
SORBS1   450000 perm   160 sec   (2815 perm/sec)   p_kst 2.933333e-04   p_cons 6.056156e-01   p_joint 2.933333e-04

Joint ci ratio: 3.373300e-01	ci left: 2.440778e-04	ci right 3.450007e-04	k: 134	n:460000
Cons ci ratio: 4.662848e-03	ci left: 6.043295e-01	ci right 6.071561e-01	k: 278642	n:460000
KS ci ratio: 3.373300e-01	ci left: 2.440778e-04	ci right 3.450007e-04	k: 134	n:460000
SORBS1   460000 perm   165 sec   (2785 perm/sec)   p_kst 2.913043e-04   p_cons 6.057435e-01   p_joint 2.913043e-04

Joint ci ratio: 3.336432e-01	ci left: 2.447300e-04	ci right 3.445789e-04	k: 137	n:470000
Cons ci ratio: 4.613622e-03	ci left: 6.042777e-01	ci right 6.070742e-01	k: 284668	n:470000
KS ci ratio: 3.336432e-01	ci left: 2.447300e-04	ci right 3.445789e-04	k: 137	n:470000
SORBS1   470000 perm   170 sec   (2760 perm/sec)   p_kst 2.914894e-04   p_cons 6.056766e-01   p_joint 2.914894e-04

Joint ci ratio: 3.312518e-01	ci left: 2.434503e-04	ci right 3.419135e-04	k: 139	n:480000
Cons ci ratio: 4.562937e-03	ci left: 6.045409e-01	ci right 6.073078e-01	k: 290844	n:480000
KS ci ratio: 3.312518e-01	ci left: 2.434503e-04	ci right 3.419135e-04	k: 139	n:480000
SORBS1   480000 perm   176 sec   (2734 perm/sec)   p_kst 2.895833e-04   p_cons 6.059250e-01   p_joint 2.895833e-04

Joint ci ratio: 3.289111e-01	ci left: 2.422254e-04	ci right 3.393544e-04	k: 141	n:490000
Cons ci ratio: 4.515756e-03	ci left: 6.045955e-01	ci right 6.073339e-01	k: 296923	n:490000
KS ci ratio: 3.289111e-01	ci left: 2.422254e-04	ci right 3.393544e-04	k: 141	n:490000
SORBS1   490000 perm   181 sec   (2709 perm/sec)   p_kst 2.877551e-04   p_cons 6.059653e-01   p_joint 2.877551e-04

Joint ci ratio: 3.266193e-01	ci left: 2.410517e-04	ci right 3.368953e-04	k: 143	n:500000
Cons ci ratio: 4.468660e-03	ci left: 6.047921e-01	ci right 6.075027e-01	k: 303074	n:500000
KS ci ratio: 3.266193e-01	ci left: 2.410517e-04	ci right 3.368953e-04	k: 143	n:500000
SORBS1   500000 perm   186 sec   (2683 perm/sec)   p_kst 2.860000e-04   p_cons 6.061480e-01   p_joint 2.860000e-04

Joint ci ratio: 3.254917e-01	ci left: 2.381255e-04	ci right 3.324103e-04	k: 144	n:510000
Cons ci ratio: 4.423497e-03	ci left: 6.049281e-01	ci right 6.076119e-01	k: 309198	n:510000
KS ci ratio: 3.254917e-01	ci left: 2.381255e-04	ci right 3.324103e-04	k: 144	n:510000
SORBS1   510000 perm   192 sec   (2656 perm/sec)   p_kst 2.823529e-04   p_cons 6.062706e-01   p_joint 2.823529e-04

Joint ci ratio: 3.168663e-01	ci left: 2.476910e-04	ci right 3.426380e-04	k: 152	n:520000
Cons ci ratio: 4.381564e-03	ci left: 6.048531e-01	ci right 6.075111e-01	k: 315215	n:520000
KS ci ratio: 3.168663e-01	ci left: 2.476910e-04	ci right 3.426380e-04	k: 152	n:520000
SORBS1   520000 perm   198 sec   (2631 perm/sec)   p_kst 2.923077e-04   p_cons 6.061827e-01   p_joint 2.923077e-04

Joint ci ratio: 3.158364e-01	ci left: 2.447545e-04	ci right 3.382093e-04	k: 153	n:530000
Cons ci ratio: 4.340252e-03	ci left: 6.048416e-01	ci right 6.074743e-01	k: 321264	n:530000
KS ci ratio: 3.158364e-01	ci left: 2.447545e-04	ci right 3.382093e-04	k: 153	n:530000
SORBS1   530000 perm   203 sec   (2608 perm/sec)   p_kst 2.886792e-04   p_cons 6.061585e-01   p_joint 2.886792e-04

Joint ci ratio: 3.118125e-01	ci left: 2.470462e-04	ci right 3.399350e-04	k: 157	n:540000
Cons ci ratio: 4.298669e-03	ci left: 6.049880e-01	ci right 6.075960e-01	k: 327398	n:540000
KS ci ratio: 3.118125e-01	ci left: 2.470462e-04	ci right 3.399350e-04	k: 157	n:540000
SORBS1   540000 perm   209 sec   (2584 perm/sec)   p_kst 2.907407e-04   p_cons 6.062926e-01   p_joint 2.907407e-04

Joint ci ratio: 3.088938e-01	ci left: 2.475842e-04	ci right 3.396324e-04	k: 160	n:550000
Cons ci ratio: 4.259621e-03	ci left: 6.049764e-01	ci right 6.075607e-01	k: 333448	n:550000
KS ci ratio: 3.088938e-01	ci left: 2.475842e-04	ci right 3.396324e-04	k: 160	n:550000
SORBS1   550000 perm   215 sec   (2560 perm/sec)   p_kst 2.909091e-04   p_cons 6.062691e-01   p_joint 2.909091e-04

Joint ci ratio: 3.069931e-01	ci left: 2.464586e-04	ci right 3.374141e-04	k: 162	n:560000
Cons ci ratio: 4.221776e-03	ci left: 6.049475e-01	ci right 6.075086e-01	k: 339488	n:560000
KS ci ratio: 3.069931e-01	ci left: 2.464586e-04	ci right 3.374141e-04	k: 162	n:560000
SORBS1   560000 perm   221 sec   (2538 perm/sec)   p_kst 2.892857e-04   p_cons 6.062286e-01   p_joint 2.892857e-04

Joint ci ratio: 3.051271e-01	ci left: 2.453740e-04	ci right 3.352720e-04	k: 164	n:570000
Cons ci ratio: 4.184706e-03	ci left: 6.049442e-01	ci right 6.074828e-01	k: 345542	n:570000
KS ci ratio: 3.051271e-01	ci left: 2.453740e-04	ci right 3.352720e-04	k: 164	n:570000
SORBS1   570000 perm   227 sec   (2515 perm/sec)   p_kst 2.877193e-04   p_cons 6.062140e-01   p_joint 2.877193e-04

Joint ci ratio: 3.023905e-01	ci left: 2.459217e-04	ci right 3.350568e-04	k: 167	n:580000
Cons ci ratio: 4.148566e-03	ci left: 6.049446e-01	ci right 6.074612e-01	k: 351598	n:580000
KS ci ratio: 3.023905e-01	ci left: 2.459217e-04	ci right 3.350568e-04	k: 167	n:580000
SORBS1   580000 perm   233 sec   (2493 perm/sec)   p_kst 2.879310e-04   p_cons 6.062034e-01   p_joint 2.879310e-04

Joint ci ratio: 2.979881e-01	ci left: 2.495901e-04	ci right 3.384887e-04	k: 172	n:590000
Cons ci ratio: 4.113610e-03	ci left: 6.049146e-01	ci right 6.074098e-01	k: 357636	n:590000
KS ci ratio: 2.979881e-01	ci left: 2.495901e-04	ci right 3.384887e-04	k: 172	n:590000
SORBS1   590000 perm   239 sec   (2471 perm/sec)   p_kst 2.915254e-04   p_cons 6.061627e-01   p_joint 2.915254e-04

Joint ci ratio: 2.946015e-01	ci left: 2.516015e-04	ci right 3.400079e-04	k: 176	n:600000
Cons ci ratio: 4.078896e-03	ci left: 6.049590e-01	ci right 6.074333e-01	k: 363718	n:600000
KS ci ratio: 2.946015e-01	ci left: 2.516015e-04	ci right 3.400079e-04	k: 176	n:600000
SORBS1   600000 perm   245 sec   (2449 perm/sec)   p_kst 2.933333e-04   p_cons 6.061967e-01   p_joint 2.933333e-04

Joint ci ratio: 2.937733e-01	ci left: 2.489952e-04	ci right 3.361940e-04	k: 177	n:610000
Cons ci ratio: 4.045963e-03	ci left: 6.048938e-01	ci right 6.073478e-01	k: 369734	n:610000
KS ci ratio: 2.937733e-01	ci left: 2.489952e-04	ci right 3.361940e-04	k: 177	n:610000
SORBS1   610000 perm   251 sec   (2428 perm/sec)   p_kst 2.901639e-04   p_cons 6.061213e-01   p_joint 2.901639e-04

Joint ci ratio: 2.897317e-01	ci left: 2.524536e-04	ci right 3.394244e-04	k: 182	n:620000
Cons ci ratio: 4.012743e-03	ci left: 6.049583e-01	ci right 6.073923e-01	k: 375829	n:620000
KS ci ratio: 2.897317e-01	ci left: 2.524536e-04	ci right 3.394244e-04	k: 182	n:620000
SORBS1   620000 perm   258 sec   (2406 perm/sec)   p_kst 2.935484e-04   p_cons 6.061758e-01   p_joint 2.935484e-04

Joint ci ratio: 2.889438e-01	ci left: 2.499185e-04	ci right 3.357390e-04	k: 183	n:630000
Cons ci ratio: 3.980223e-03	ci left: 6.050335e-01	ci right 6.074480e-01	k: 381932	n:630000
KS ci ratio: 2.889438e-01	ci left: 2.499185e-04	ci right 3.357390e-04	k: 183	n:630000
SORBS1   630000 perm   264 sec   (2386 perm/sec)   p_kst 2.904762e-04   p_cons 6.062413e-01   p_joint 2.904762e-04

Joint ci ratio: 2.873864e-01	ci left: 2.489126e-04	ci right 3.338434e-04	k: 185	n:640000
Cons ci ratio: 3.949036e-03	ci left: 6.050392e-01	ci right 6.074348e-01	k: 387992	n:640000
KS ci ratio: 2.873864e-01	ci left: 2.489126e-04	ci right 3.338434e-04	k: 185	n:640000
SORBS1   640000 perm   271 sec   (2364 perm/sec)   p_kst 2.890625e-04   p_cons 6.062375e-01   p_joint 2.890625e-04

Joint ci ratio: 2.843449e-01	ci left: 2.507960e-04	ci right 3.353011e-04	k: 189	n:650000
Cons ci ratio: 3.918950e-03	ci left: 6.049987e-01	ci right 6.073758e-01	k: 394022	n:650000
KS ci ratio: 2.843449e-01	ci left: 2.507960e-04	ci right 3.353011e-04	k: 189	n:650000
SORBS1   650000 perm   277 sec   (2344 perm/sec)   p_kst 2.907692e-04   p_cons 6.061877e-01   p_joint 2.907692e-04

Joint ci ratio: 2.836000e-01	ci left: 2.484032e-04	ci right 3.318436e-04	k: 190	n:660000
Cons ci ratio: 3.888937e-03	ci left: 6.050337e-01	ci right 6.073927e-01	k: 400101	n:660000
KS ci ratio: 2.836000e-01	ci left: 2.484032e-04	ci right 3.318436e-04	k: 190	n:660000
SORBS1   660000 perm   284 sec   (2324 perm/sec)   p_kst 2.878788e-04   p_cons 6.062136e-01   p_joint 2.878788e-04

Joint ci ratio: 2.821269e-01	ci left: 2.474690e-04	ci right 3.300870e-04	k: 192	n:670000
Cons ci ratio: 3.859337e-03	ci left: 6.051006e-01	ci right 6.074418e-01	k: 406202	n:670000
KS ci ratio: 2.821269e-01	ci left: 2.474690e-04	ci right 3.300870e-04	k: 192	n:670000
SORBS1   670000 perm   291 sec   (2305 perm/sec)   p_kst 2.865672e-04   p_cons 6.062716e-01   p_joint 2.865672e-04

Joint ci ratio: 2.799594e-01	ci left: 2.479307e-04	ci right 3.299547e-04	k: 195	n:680000
Cons ci ratio: 3.830828e-03	ci left: 6.051126e-01	ci right 6.074365e-01	k: 412267	n:680000
KS ci ratio: 2.799594e-01	ci left: 2.479307e-04	ci right 3.299547e-04	k: 195	n:680000
SORBS1   680000 perm   297 sec   (2287 perm/sec)   p_kst 2.867647e-04   p_cons 6.062750e-01   p_joint 2.867647e-04

Joint ci ratio: 2.778412e-01	ci left: 2.483812e-04	ci right 3.298238e-04	k: 198	n:690000
Cons ci ratio: 3.802941e-03	ci left: 6.051243e-01	ci right 6.074313e-01	k: 418332	n:690000
KS ci ratio: 2.778412e-01	ci left: 2.483812e-04	ci right 3.298238e-04	k: 198	n:690000
SORBS1   690000 perm   304 sec   (2268 perm/sec)   p_kst 2.869565e-04   p_cons 6.062783e-01   p_joint 2.869565e-04

Joint ci ratio: 2.764556e-01	ci left: 2.474915e-04	ci right 3.281673e-04	k: 200	n:700000
Cons ci ratio: 3.775451e-03	ci left: 6.051615e-01	ci right 6.074519e-01	k: 424415	n:700000
KS ci ratio: 2.764556e-01	ci left: 2.474915e-04	ci right 3.281673e-04	k: 200	n:700000
SORBS1   700000 perm   311 sec   (2251 perm/sec)   p_kst 2.857143e-04   p_cons 6.063071e-01   p_joint 2.857143e-04

Joint ci ratio: 2.724189e-01	ci left: 2.518751e-04	ci right 3.325758e-04	k: 206	n:710000
Cons ci ratio: 3.748515e-03	ci left: 6.052019e-01	ci right 6.074761e-01	k: 430501	n:710000
KS ci ratio: 2.724189e-01	ci left: 2.518751e-04	ci right 3.325758e-04	k: 206	n:710000
SORBS1   710000 perm   318 sec   (2234 perm/sec)   p_kst 2.901408e-04   p_cons 6.063394e-01   p_joint 2.901408e-04

Joint ci ratio: 2.717636e-01	ci left: 2.496709e-04	ci right 3.294402e-04	k: 207	n:720000
Cons ci ratio: 3.722506e-03	ci left: 6.051954e-01	ci right 6.074538e-01	k: 436554	n:720000
KS ci ratio: 2.717636e-01	ci left: 2.496709e-04	ci right 3.294402e-04	k: 207	n:720000
SORBS1   720000 perm   325 sec   (2216 perm/sec)   p_kst 2.875000e-04   p_cons 6.063250e-01   p_joint 2.875000e-04

Joint ci ratio: 2.704666e-01	ci left: 2.488043e-04	ci right 3.278528e-04	k: 209	n:730000
Cons ci ratio: 3.697486e-03	ci left: 6.051302e-01	ci right 6.073731e-01	k: 442564	n:730000
KS ci ratio: 2.704666e-01	ci left: 2.488043e-04	ci right 3.278528e-04	k: 209	n:730000
SORBS1   730000 perm   332 sec   (2199 perm/sec)   p_kst 2.863014e-04   p_cons 6.062521e-01   p_joint 2.863014e-04

Joint ci ratio: 2.704671e-01	ci left: 2.454420e-04	ci right 3.234225e-04	k: 209	n:740000
Cons ci ratio: 3.671447e-03	ci left: 6.052642e-01	ci right 6.074918e-01	k: 448720	n:740000
KS ci ratio: 2.704671e-01	ci left: 2.454420e-04	ci right 3.234225e-04	k: 209	n:740000
SORBS1   740000 perm   339 sec   (2182 perm/sec)   p_kst 2.824324e-04   p_cons 6.063784e-01   p_joint 2.824324e-04

Joint ci ratio: 2.685557e-01	ci left: 2.458992e-04	ci right 3.233798e-04	k: 212	n:750000
Cons ci ratio: 3.647477e-03	ci left: 6.051945e-01	ci right 6.074073e-01	k: 454726	n:750000
KS ci ratio: 2.685557e-01	ci left: 2.458992e-04	ci right 3.233798e-04	k: 212	n:750000
SORBS1   750000 perm   346 sec   (2166 perm/sec)   p_kst 2.826667e-04   p_cons 6.063013e-01   p_joint 2.826667e-04

Joint ci ratio: 2.648507e-01	ci left: 2.500307e-04	ci right 3.275460e-04	k: 218	n:760000
Cons ci ratio: 3.623691e-03	ci left: 6.051637e-01	ci right 6.073618e-01	k: 460760	n:760000
KS ci ratio: 2.648507e-01	ci left: 2.500307e-04	ci right 3.275460e-04	k: 218	n:760000
SORBS1   760000 perm   353 sec   (2150 perm/sec)   p_kst 2.868421e-04   p_cons 6.062632e-01   p_joint 2.868421e-04

Joint ci ratio: 2.624644e-01	ci left: 2.516351e-04	ci right 3.288295e-04	k: 222	n:770000
Cons ci ratio: 3.601500e-03	ci left: 6.049829e-01	ci right 6.071669e-01	k: 466678	n:770000
KS ci ratio: 2.624644e-01	ci left: 2.516351e-04	ci right 3.288295e-04	k: 222	n:770000
SORBS1   770000 perm   361 sec   (2134 perm/sec)   p_kst 2.883117e-04   p_cons 6.060753e-01   p_joint 2.883117e-04

Joint ci ratio: 2.618782e-01	ci left: 2.496067e-04	ci right 3.259799e-04	k: 223	n:780000
Cons ci ratio: 3.578173e-03	ci left: 6.050121e-01	ci right 6.071820e-01	k: 472756	n:780000
KS ci ratio: 2.618782e-01	ci left: 2.496067e-04	ci right 3.259799e-04	k: 223	n:780000
SORBS1   780000 perm   369 sec   (2117 perm/sec)   p_kst 2.858974e-04   p_cons 6.060974e-01   p_joint 2.858974e-04

Joint ci ratio: 2.578792e-01	ci left: 2.547309e-04	ci right 3.312901e-04	k: 230	n:790000
Cons ci ratio: 3.555417e-03	ci left: 6.050241e-01	ci right 6.071802e-01	k: 478821	n:790000
KS ci ratio: 2.578792e-01	ci left: 2.547309e-04	ci right 3.312901e-04	k: 230	n:790000
SORBS1   790000 perm   376 sec   (2100 perm/sec)   p_kst 2.911392e-04   p_cons 6.061025e-01   p_joint 2.911392e-04

Joint ci ratio: 2.573231e-01	ci left: 2.527160e-04	ci right 3.284795e-04	k: 231	n:800000
Cons ci ratio: 3.533061e-03	ci left: 6.050395e-01	ci right 6.071822e-01	k: 484889	n:800000
KS ci ratio: 2.573231e-01	ci left: 2.527160e-04	ci right 3.284795e-04	k: 231	n:800000
SORBS1   800000 perm   384 sec   (2085 perm/sec)   p_kst 2.887500e-04   p_cons 6.061112e-01   p_joint 2.887500e-04

Joint ci ratio: 2.562212e-01	ci left: 2.519063e-04	ci right 3.270520e-04	k: 233	n:810000
Cons ci ratio: 3.511194e-03	ci left: 6.050448e-01	ci right 6.071742e-01	k: 490949	n:810000
KS ci ratio: 2.562212e-01	ci left: 2.519063e-04	ci right 3.270520e-04	k: 233	n:810000
SORBS1   810000 perm   391 sec   (2070 perm/sec)   p_kst 2.876543e-04   p_cons 6.061099e-01   p_joint 2.876543e-04

Joint ci ratio: 2.551334e-01	ci left: 2.511170e-04	ci right 3.256585e-04	k: 235	n:820000
Cons ci ratio: 3.489533e-03	ci left: 6.050768e-01	ci right 6.071931e-01	k: 497031	n:820000
KS ci ratio: 2.551334e-01	ci left: 2.511170e-04	ci right 3.256585e-04	k: 235	n:820000
SORBS1   820000 perm   399 sec   (2055 perm/sec)   p_kst 2.865854e-04   p_cons 6.061354e-01   p_joint 2.865854e-04

Joint ci ratio: 2.535271e-01	ci left: 2.514756e-04	ci right 3.255793e-04	k: 238	n:830000
Cons ci ratio: 3.467961e-03	ci left: 6.051503e-01	ci right 6.072538e-01	k: 503148	n:830000
KS ci ratio: 2.535271e-01	ci left: 2.514756e-04	ci right 3.255793e-04	k: 238	n:830000
SORBS1   830000 perm   407 sec   (2040 perm/sec)   p_kst 2.867470e-04   p_cons 6.062024e-01   p_joint 2.867470e-04

Joint ci ratio: 2.504029e-01	ci left: 2.551737e-04	ci right 3.292962e-04	k: 244	n:840000
Cons ci ratio: 3.446896e-03	ci left: 6.052066e-01	ci right 6.072974e-01	k: 509252	n:840000
KS ci ratio: 2.504029e-01	ci left: 2.551737e-04	ci right 3.292962e-04	k: 244	n:840000
SORBS1   840000 perm   415 sec   (2026 perm/sec)   p_kst 2.904762e-04   p_cons 6.062524e-01   p_joint 2.904762e-04

Joint ci ratio: 2.488838e-01	ci left: 2.554803e-04	ci right 3.291719e-04	k: 247	n:850000
Cons ci ratio: 3.426868e-03	ci left: 6.051698e-01	ci right 6.072483e-01	k: 515278	n:850000
KS ci ratio: 2.488838e-01	ci left: 2.554803e-04	ci right 3.291719e-04	k: 247	n:850000
SORBS1   850000 perm   422 sec   (2012 perm/sec)   p_kst 2.905882e-04   p_cons 6.062094e-01   p_joint 2.905882e-04

Joint ci ratio: 2.473920e-01	ci left: 2.557811e-04	ci right 3.290492e-04	k: 250	n:860000
Cons ci ratio: 3.407733e-03	ci left: 6.050571e-01	ci right 6.071236e-01	k: 521238	n:860000
KS ci ratio: 2.473920e-01	ci left: 2.557811e-04	ci right 3.290492e-04	k: 250	n:860000
SORBS1   860000 perm   431 sec   (1998 perm/sec)   p_kst 2.906977e-04   p_cons 6.060907e-01   p_joint 2.906977e-04

Joint ci ratio: 2.469009e-01	ci left: 2.539193e-04	ci right 3.264875e-04	k: 251	n:870000
Cons ci ratio: 3.388662e-03	ci left: 6.049827e-01	ci right 6.070373e-01	k: 527229	n:870000
KS ci ratio: 2.469009e-01	ci left: 2.539193e-04	ci right 3.264875e-04	k: 251	n:870000
SORBS1   870000 perm   439 sec   (1984 perm/sec)   p_kst 2.885057e-04   p_cons 6.060103e-01   p_joint 2.885057e-04

Joint ci ratio: 2.459270e-01	ci left: 2.531662e-04	ci right 3.251902e-04	k: 253	n:880000
Cons ci ratio: 3.369122e-03	ci left: 6.050214e-01	ci right 6.070643e-01	k: 533318	n:880000
KS ci ratio: 2.459270e-01	ci left: 2.531662e-04	ci right 3.251902e-04	k: 253	n:880000
SORBS1   880000 perm   447 sec   (1969 perm/sec)   p_kst 2.875000e-04   p_cons 6.060432e-01   p_joint 2.875000e-04

Joint ci ratio: 2.449646e-01	ci left: 2.524306e-04	ci right 3.239215e-04	k: 255	n:890000
Cons ci ratio: 3.349656e-03	ci left: 6.050963e-01	ci right 6.071277e-01	k: 539440	n:890000
KS ci ratio: 2.449646e-01	ci left: 2.524306e-04	ci right 3.239215e-04	k: 255	n:890000
SORBS1   890000 perm   455 sec   (1956 perm/sec)   p_kst 2.865169e-04   p_cons 6.061124e-01   p_joint 2.865169e-04

Joint ci ratio: 2.426066e-01	ci left: 2.548421e-04	ci right 3.262166e-04	k: 260	n:900000
Cons ci ratio: 3.331484e-03	ci left: 6.050318e-01	ci right 6.070519e-01	k: 545438	n:900000
KS ci ratio: 2.426066e-01	ci left: 2.548421e-04	ci right 3.262166e-04	k: 260	n:900000
SORBS1   900000 perm   464 sec   (1941 perm/sec)   p_kst 2.888889e-04   p_cons 6.060422e-01   p_joint 2.888889e-04

Joint ci ratio: 2.403154e-01	ci left: 2.572037e-04	ci right 3.284581e-04	k: 265	n:910000
Cons ci ratio: 3.312949e-03	ci left: 6.050633e-01	ci right 6.070723e-01	k: 551522	n:910000
KS ci ratio: 2.403154e-01	ci left: 2.572037e-04	ci right 3.284581e-04	k: 265	n:910000
SORBS1   910000 perm   472 sec   (1928 perm/sec)   p_kst 2.912088e-04   p_cons 6.060681e-01   p_joint 2.912088e-04

Joint ci ratio: 2.394171e-01	ci left: 2.564513e-04	ci right 3.271922e-04	k: 267	n:920000
Cons ci ratio: 3.294779e-03	ci left: 6.050855e-01	ci right 6.070834e-01	k: 557598	n:920000
KS ci ratio: 2.394171e-01	ci left: 2.564513e-04	ci right 3.271922e-04	k: 267	n:920000
SORBS1   920000 perm   480 sec   (1915 perm/sec)   p_kst 2.902174e-04   p_cons 6.060848e-01   p_joint 2.902174e-04

Joint ci ratio: 2.380882e-01	ci left: 2.567266e-04	ci right 3.270924e-04	k: 270	n:930000
Cons ci ratio: 3.277179e-03	ci left: 6.050674e-01	ci right 6.070546e-01	k: 563637	n:930000
KS ci ratio: 2.380882e-01	ci left: 2.567266e-04	ci right 3.270924e-04	k: 270	n:930000
SORBS1   930000 perm   489 sec   (1903 perm/sec)   p_kst 2.903226e-04   p_cons 6.060613e-01   p_joint 2.903226e-04

Joint ci ratio: 2.359215e-01	ci left: 2.589988e-04	ci right 3.292471e-04	k: 275	n:940000
Cons ci ratio: 3.259487e-03	ci left: 6.051039e-01	ci right 6.070805e-01	k: 569727	n:940000
KS ci ratio: 2.359215e-01	ci left: 2.589988e-04	ci right 3.292471e-04	k: 275	n:940000
SORBS1   940000 perm   498 sec   (1889 perm/sec)   p_kst 2.925532e-04   p_cons 6.060926e-01   p_joint 2.925532e-04

Joint ci ratio: 2.350715e-01	ci left: 2.582536e-04	ci right 3.280106e-04	k: 277	n:950000
Cons ci ratio: 3.242779e-03	ci left: 6.050366e-01	ci right 6.070028e-01	k: 575719	n:950000
KS ci ratio: 2.350715e-01	ci left: 2.582536e-04	ci right 3.280106e-04	k: 277	n:950000
SORBS1   950000 perm   506 sec   (1877 perm/sec)   p_kst 2.915789e-04   p_cons 6.060200e-01   p_joint 2.915789e-04

Joint ci ratio: 2.342305e-01	ci left: 2.575243e-04	ci right 3.267994e-04	k: 279	n:960000
Cons ci ratio: 3.226023e-03	ci left: 6.050155e-01	ci right 6.069714e-01	k: 581754	n:960000
KS ci ratio: 2.342305e-01	ci left: 2.575243e-04	ci right 3.267994e-04	k: 279	n:960000
SORBS1   960000 perm   515 sec   (1864 perm/sec)   p_kst 2.906250e-04   p_cons 6.059937e-01   p_joint 2.906250e-04

Joint ci ratio: 2.329857e-01	ci left: 2.577812e-04	ci right 3.267038e-04	k: 282	n:970000
Cons ci ratio: 3.209745e-03	ci left: 6.049618e-01	ci right 6.069077e-01	k: 587757	n:970000
KS ci ratio: 2.329857e-01	ci left: 2.577812e-04	ci right 3.267038e-04	k: 282	n:970000
SORBS1   970000 perm   524 sec   (1850 perm/sec)   p_kst 2.907216e-04   p_cons 6.059351e-01   p_joint 2.907216e-04

Joint ci ratio: 2.321669e-01	ci left: 2.570727e-04	ci right 3.255296e-04	k: 284	n:980000
Cons ci ratio: 3.193200e-03	ci left: 6.049858e-01	ci right 6.069217e-01	k: 593835	n:980000
KS ci ratio: 2.321669e-01	ci left: 2.570727e-04	ci right 3.255296e-04	k: 284	n:980000
SORBS1   980000 perm   533 sec   (1837 perm/sec)   p_kst 2.897959e-04   p_cons 6.059541e-01   p_joint 2.897959e-04

Joint ci ratio: 2.313566e-01	ci left: 2.563789e-04	ci right 3.243788e-04	k: 286	n:990000
Cons ci ratio: 3.176787e-03	ci left: 6.050276e-01	ci right 6.069536e-01	k: 599931	n:990000
KS ci ratio: 2.313566e-01	ci left: 2.563789e-04	ci right 3.243788e-04	k: 286	n:990000
SORBS1   990000 perm   542 sec   (1825 perm/sec)   p_kst 2.888889e-04   p_cons 6.059909e-01   p_joint 2.888889e-04

Joint ci ratio: 2.313570e-01	ci left: 2.538150e-04	ci right 3.211350e-04	k: 286	n:1000000
Cons ci ratio: 3.160935e-03	ci left: 6.050215e-01	ci right 6.069379e-01	k: 605980	n:1000000
KS ci ratio: 2.313570e-01	ci left: 2.538150e-04	ci right 3.211350e-04	k: 286	n:1000000
SORBS1   1000000 perm   552 sec   (1813 perm/sec)   p_kst 2.860000e-04   p_cons 6.059800e-01   p_joint 2.860000e-04

Joint ci ratio: 2.297612e-01	ci left: 2.550337e-04	ci right 3.221442e-04	k: 290	n:1010000
Cons ci ratio: 3.145364e-03	ci left: 6.050086e-01	ci right 6.069155e-01	k: 612022	n:1010000
KS ci ratio: 2.297612e-01	ci left: 2.550337e-04	ci right 3.221442e-04	k: 290	n:1010000
SORBS1   1010000 perm   561 sec   (1801 perm/sec)   p_kst 2.871287e-04   p_cons 6.059624e-01   p_joint 2.871287e-04

Joint ci ratio: 2.285860e-01	ci left: 2.553057e-04	ci right 3.220956e-04	k: 293	n:1020000
Cons ci ratio: 3.129809e-03	ci left: 6.050284e-01	ci right 6.069259e-01	k: 618097	n:1020000
KS ci ratio: 2.285860e-01	ci left: 2.553057e-04	ci right 3.220956e-04	k: 293	n:1020000
SORBS1   1020000 perm   570 sec   (1789 perm/sec)   p_kst 2.872549e-04   p_cons 6.059775e-01   p_joint 2.872549e-04

Joint ci ratio: 2.274286e-01	ci left: 2.555733e-04	ci right 3.220472e-04	k: 296	n:1030000
Cons ci ratio: 3.114071e-03	ci left: 6.051109e-01	ci right 6.069992e-01	k: 624237	n:1030000
KS ci ratio: 2.274286e-01	ci left: 2.555733e-04	ci right 3.220472e-04	k: 296	n:1030000
SORBS1   1030000 perm   579 sec   (1778 perm/sec)   p_kst 2.873786e-04   p_cons 6.060553e-01   p_joint 2.873786e-04

Joint ci ratio: 2.259122e-01	ci left: 2.567436e-04	ci right 3.230147e-04	k: 300	n:1040000
Cons ci ratio: 3.098580e-03	ci left: 6.051900e-01	ci right 6.070690e-01	k: 630375	n:1040000
KS ci ratio: 2.259122e-01	ci left: 2.567436e-04	ci right 3.230147e-04	k: 300	n:1040000
SORBS1   1040000 perm   589 sec   (1767 perm/sec)   p_kst 2.884615e-04   p_cons 6.061298e-01   p_joint 2.884615e-04

Joint ci ratio: 2.244258e-01	ci left: 2.578931e-04	ci right 3.239624e-04	k: 304	n:1050000
Cons ci ratio: 3.083779e-03	ci left: 6.051961e-01	ci right 6.070662e-01	k: 636438	n:1050000
KS ci ratio: 2.244258e-01	ci left: 2.578931e-04	ci right 3.239624e-04	k: 304	n:1050000
SORBS1   1050000 perm   598 sec   (1756 perm/sec)   p_kst 2.895238e-04   p_cons 6.061314e-01   p_joint 2.895238e-04

Joint ci ratio: 2.236937e-01	ci left: 2.572411e-04	ci right 3.228987e-04	k: 306	n:1060000
Cons ci ratio: 3.069419e-03	ci left: 6.051662e-01	ci right 6.070275e-01	k: 642463	n:1060000
KS ci ratio: 2.236937e-01	ci left: 2.572411e-04	ci right 3.228987e-04	k: 306	n:1060000
SORBS1   1060000 perm   607 sec   (1745 perm/sec)   p_kst 2.886792e-04   p_cons 6.060972e-01   p_joint 2.886792e-04

Joint ci ratio: 2.229687e-01	ci left: 2.566015e-04	ci right 3.218545e-04	k: 308	n:1070000
Cons ci ratio: 3.054797e-03	ci left: 6.052090e-01	ci right 6.070615e-01	k: 648565	n:1070000
KS ci ratio: 2.229687e-01	ci left: 2.566015e-04	ci right 3.218545e-04	k: 308	n:1070000
SORBS1   1070000 perm   617 sec   (1734 perm/sec)   p_kst 2.878505e-04   p_cons 6.061355e-01   p_joint 2.878505e-04

Joint ci ratio: 2.226090e-01	ci left: 2.550998e-04	ci right 3.198519e-04	k: 309	n:1080000
Cons ci ratio: 3.040782e-03	ci left: 6.051879e-01	ci right 6.070319e-01	k: 654599	n:1080000
KS ci ratio: 2.226090e-01	ci left: 2.550998e-04	ci right 3.198519e-04	k: 309	n:1080000
SORBS1   1080000 perm   626 sec   (1724 perm/sec)   p_kst 2.861111e-04   p_cons 6.061102e-01   p_joint 2.861111e-04

Joint ci ratio: 2.218944e-01	ci left: 2.544922e-04	ci right 3.188544e-04	k: 311	n:1090000
Cons ci ratio: 3.026308e-03	ci left: 6.052701e-01	ci right 6.071055e-01	k: 660745	n:1090000
KS ci ratio: 2.218944e-01	ci left: 2.544922e-04	ci right 3.188544e-04	k: 311	n:1090000
SORBS1   1090000 perm   636 sec   (1714 perm/sec)   p_kst 2.853211e-04   p_cons 6.061881e-01   p_joint 2.853211e-04

Joint ci ratio: 2.208353e-01	ci left: 2.547547e-04	ci right 3.188339e-04	k: 314	n:1100000
Cons ci ratio: 3.012245e-03	ci left: 6.053180e-01	ci right 6.071450e-01	k: 666855	n:1100000
KS ci ratio: 2.208353e-01	ci left: 2.547547e-04	ci right 3.188339e-04	k: 314	n:1100000
SORBS1   1100000 perm   646 sec   (1703 perm/sec)   p_kst 2.854545e-04   p_cons 6.062318e-01   p_joint 2.854545e-04

Joint ci ratio: 2.194462e-01	ci left: 2.558645e-04	ci right 3.197635e-04	k: 318	n:1110000
Cons ci ratio: 2.999281e-03	ci left: 6.052209e-01	ci right 6.070398e-01	k: 672805	n:1110000
KS ci ratio: 2.194462e-01	ci left: 2.558645e-04	ci right 3.197635e-04	k: 318	n:1110000
SORBS1   1110000 perm   656 sec   (1693 perm/sec)   p_kst 2.864865e-04   p_cons 6.061306e-01   p_joint 2.864865e-04

Joint ci ratio: 2.187616e-01	ci left: 2.552677e-04	ci right 3.187920e-04	k: 320	n:1120000
Cons ci ratio: 2.985684e-03	ci left: 6.052533e-01	ci right 6.070640e-01	k: 678898	n:1120000
KS ci ratio: 2.187616e-01	ci left: 2.552677e-04	ci right 3.187920e-04	k: 320	n:1120000
SORBS1   1120000 perm   666 sec   (1682 perm/sec)   p_kst 2.857143e-04   p_cons 6.061589e-01   p_joint 2.857143e-04

Joint ci ratio: 2.174111e-01	ci left: 2.563552e-04	ci right 3.197037e-04	k: 324	n:1130000
Cons ci ratio: 2.972552e-03	ci left: 6.052400e-01	ci right 6.070426e-01	k: 684940	n:1130000
KS ci ratio: 2.174111e-01	ci left: 2.563552e-04	ci right 3.197037e-04	k: 324	n:1130000
SORBS1   1130000 perm   676 sec   (1672 perm/sec)   p_kst 2.867257e-04   p_cons 6.061416e-01   p_joint 2.867257e-04

Joint ci ratio: 2.157576e-01	ci left: 2.582546e-04	ci right 3.215228e-04	k: 329	n:1140000
Cons ci ratio: 2.959532e-03	ci left: 6.052366e-01	ci right 6.070313e-01	k: 690993	n:1140000
KS ci ratio: 2.157576e-01	ci left: 2.582546e-04	ci right 3.215228e-04	k: 329	n:1140000
SORBS1   1140000 perm   686 sec   (1662 perm/sec)   p_kst 2.885965e-04   p_cons 6.061342e-01   p_joint 2.885965e-04

Joint ci ratio: 2.151068e-01	ci left: 2.576542e-04	ci right 3.205598e-04	k: 331	n:1150000
Cons ci ratio: 2.946294e-03	ci left: 6.052959e-01	ci right 6.070827e-01	k: 697118	n:1150000
KS ci ratio: 2.151068e-01	ci left: 2.576542e-04	ci right 3.205598e-04	k: 331	n:1150000
SORBS1   1150000 perm   696 sec   (1652 perm/sec)   p_kst 2.878261e-04   p_cons 6.061896e-01   p_joint 2.878261e-04

Joint ci ratio: 2.147837e-01	ci left: 2.562487e-04	ci right 3.187047e-04	k: 332	n:1160000
Cons ci ratio: 2.933927e-03	ci left: 6.052412e-01	ci right 6.070204e-01	k: 703112	n:1160000
KS ci ratio: 2.147837e-01	ci left: 2.562487e-04	ci right 3.187047e-04	k: 332	n:1160000
SORBS1   1160000 perm   706 sec   (1642 perm/sec)   p_kst 2.862069e-04   p_cons 6.061310e-01   p_joint 2.862069e-04

Joint ci ratio: 2.141417e-01	ci left: 2.556761e-04	ci right 3.177819e-04	k: 334	n:1170000
Cons ci ratio: 2.921724e-03	ci left: 6.051857e-01	ci right 6.069573e-01	k: 709104	n:1170000
KS ci ratio: 2.141417e-01	ci left: 2.556761e-04	ci right 3.177819e-04	k: 334	n:1170000
SORBS1   1170000 perm   717 sec   (1633 perm/sec)   p_kst 2.854701e-04   p_cons 6.060718e-01   p_joint 2.854701e-04

Joint ci ratio: 2.141420e-01	ci left: 2.535093e-04	ci right 3.150888e-04	k: 334	n:1180000
Cons ci ratio: 2.909017e-03	ci left: 6.052389e-01	ci right 6.070029e-01	k: 715223	n:1180000
KS ci ratio: 2.141420e-01	ci left: 2.535093e-04	ci right 3.150888e-04	k: 334	n:1180000
SORBS1   1180000 perm   727 sec   (1623 perm/sec)   p_kst 2.830508e-04   p_cons 6.061212e-01   p_joint 2.830508e-04

Joint ci ratio: 2.131895e-01	ci left: 2.537651e-04	ci right 3.150967e-04	k: 337	n:1190000
Cons ci ratio: 2.896979e-03	ci left: 6.052080e-01	ci right 6.069646e-01	k: 721243	n:1190000
KS ci ratio: 2.131895e-01	ci left: 2.537651e-04	ci right 3.150967e-04	k: 337	n:1190000
SORBS1   1190000 perm   738 sec   (1613 perm/sec)   p_kst 2.831933e-04   p_cons 6.060866e-01   p_joint 2.831933e-04

Joint ci ratio: 2.116298e-01	ci left: 2.555955e-04	ci right 3.168589e-04	k: 342	n:1200000
Cons ci ratio: 2.885224e-03	ci left: 6.051551e-01	ci right 6.069044e-01	k: 727236	n:1200000
KS ci ratio: 2.116298e-01	ci left: 2.555955e-04	ci right 3.168589e-04	k: 342	n:1200000
SORBS1   1200000 perm   748 sec   (1604 perm/sec)   p_kst 2.850000e-04   p_cons 6.060300e-01   p_joint 2.850000e-04

Joint ci ratio: 2.110155e-01	ci left: 2.550485e-04	ci right 3.159805e-04	k: 344	n:1210000
Cons ci ratio: 2.873766e-03	ci left: 6.050774e-01	ci right 6.068196e-01	k: 733198	n:1210000
KS ci ratio: 2.110155e-01	ci left: 2.550485e-04	ci right 3.159805e-04	k: 344	n:1210000
SORBS1   1210000 perm   759 sec   (1594 perm/sec)   p_kst 2.842975e-04   p_cons 6.059488e-01   p_joint 2.842975e-04

Joint ci ratio: 2.107105e-01	ci left: 2.537343e-04	ci right 3.142534e-04	k: 345	n:1220000
Cons ci ratio: 2.862109e-03	ci left: 6.050568e-01	ci right 6.067918e-01	k: 739228	n:1220000
KS ci ratio: 2.107105e-01	ci left: 2.537343e-04	ci right 3.142534e-04	k: 345	n:1220000
SORBS1   1220000 perm   770 sec   (1585 perm/sec)   p_kst 2.827869e-04   p_cons 6.059246e-01   p_joint 2.827869e-04

Joint ci ratio: 2.101042e-01	ci left: 2.532118e-04	ci right 3.134101e-04	k: 347	n:1230000
Cons ci ratio: 2.850306e-03	ci left: 6.050846e-01	ci right 6.068125e-01	k: 745317	n:1230000
KS ci ratio: 2.101042e-01	ci left: 2.532118e-04	ci right 3.134101e-04	k: 347	n:1230000
SORBS1   1230000 perm   780 sec   (1576 perm/sec)   p_kst 2.821138e-04   p_cons 6.059488e-01   p_joint 2.821138e-04

Joint ci ratio: 2.098032e-01	ci left: 2.519338e-04	ci right 3.117314e-04	k: 348	n:1240000
Cons ci ratio: 2.839238e-03	ci left: 6.050126e-01	ci right 6.067336e-01	k: 751283	n:1240000
KS ci ratio: 2.098032e-01	ci left: 2.519338e-04	ci right 3.117314e-04	k: 348	n:1240000
SORBS1   1240000 perm   791 sec   (1567 perm/sec)   p_kst 2.806452e-04   p_cons 6.058734e-01   p_joint 2.806452e-04

Joint ci ratio: 2.083161e-01	ci left: 2.537089e-04	ci right 3.134466e-04	k: 353	n:1250000
Cons ci ratio: 2.828094e-03	ci left: 6.049763e-01	ci right 6.066904e-01	k: 757292	n:1250000
KS ci ratio: 2.083161e-01	ci left: 2.537089e-04	ci right 3.134466e-04	k: 353	n:1250000
SORBS1   1250000 perm   802 sec   (1558 perm/sec)   p_kst 2.824000e-04   p_cons 6.058336e-01   p_joint 2.824000e-04

Joint ci ratio: 2.077301e-01	ci left: 2.532000e-04	ci right 3.126288e-04	k: 355	n:1260000
Cons ci ratio: 2.817164e-03	ci left: 6.049262e-01	ci right 6.066336e-01	k: 763283	n:1260000
KS ci ratio: 2.077301e-01	ci left: 2.532000e-04	ci right 3.126288e-04	k: 355	n:1260000
SORBS1   1260000 perm   813 sec   (1549 perm/sec)   p_kst 2.817460e-04   p_cons 6.057802e-01   p_joint 2.817460e-04

Joint ci ratio: 2.065728e-01	ci left: 2.541925e-04	ci right 3.134799e-04	k: 359	n:1270000
Cons ci ratio: 2.806212e-03	ci left: 6.049022e-01	ci right 6.066028e-01	k: 769306	n:1270000
KS ci ratio: 2.065728e-01	ci left: 2.541925e-04	ci right 3.134799e-04	k: 359	n:1270000
SORBS1   1270000 perm   825 sec   (1540 perm/sec)   p_kst 2.826772e-04   p_cons 6.057528e-01   p_joint 2.826772e-04

Joint ci ratio: 2.057174e-01	ci left: 2.544294e-04	ci right 3.134954e-04	k: 362	n:1280000
Cons ci ratio: 2.795313e-03	ci left: 6.048911e-01	ci right 6.065850e-01	k: 775345	n:1280000
KS ci ratio: 2.057174e-01	ci left: 2.544294e-04	ci right 3.134954e-04	k: 362	n:1280000
SORBS1   1280000 perm   836 sec   (1532 perm/sec)   p_kst 2.828125e-04   p_cons 6.057383e-01   p_joint 2.828125e-04

Joint ci ratio: 2.051531e-01	ci left: 2.539277e-04	ci right 3.126952e-04	k: 364	n:1290000
Cons ci ratio: 2.784577e-03	ci left: 6.048739e-01	ci right 6.065613e-01	k: 781376	n:1290000
KS ci ratio: 2.051531e-01	ci left: 2.539277e-04	ci right 3.126952e-04	k: 364	n:1290000
SORBS1   1290000 perm   847 sec   (1524 perm/sec)   p_kst 2.821705e-04   p_cons 6.057178e-01   p_joint 2.821705e-04

Joint ci ratio: 2.045934e-01	ci left: 2.534340e-04	ci right 3.119072e-04	k: 366	n:1300000
Cons ci ratio: 2.773700e-03	ci left: 6.049024e-01	ci right 6.065833e-01	k: 787466	n:1300000
KS ci ratio: 2.045934e-01	ci left: 2.534340e-04	ci right 3.119072e-04	k: 366	n:1300000
SORBS1   1300000 perm   858 sec   (1516 perm/sec)   p_kst 2.815385e-04   p_cons 6.057431e-01   p_joint 2.815385e-04

Joint ci ratio: 2.026694e-01	ci left: 2.565704e-04	ci right 3.151418e-04	k: 373	n:1310000
Cons ci ratio: 2.763192e-03	ci left: 6.048885e-01	ci right 6.065630e-01	k: 793501	n:1310000
KS ci ratio: 2.026694e-01	ci left: 2.565704e-04	ci right 3.151418e-04	k: 373	n:1310000
SORBS1   1310000 perm   869 sec   (1508 perm/sec)   p_kst 2.847328e-04   p_cons 6.057260e-01   p_joint 2.847328e-04

Joint ci ratio: 2.021297e-01	ci left: 2.560651e-04	ci right 3.143462e-04	k: 375	n:1320000
Cons ci ratio: 2.752763e-03	ci left: 6.048816e-01	ci right 6.065497e-01	k: 799545	n:1320000
KS ci ratio: 2.021297e-01	ci left: 2.560651e-04	ci right 3.143462e-04	k: 375	n:1320000
SORBS1   1320000 perm   880 sec   (1500 perm/sec)   p_kst 2.840909e-04   p_cons 6.057159e-01   p_joint 2.840909e-04

Joint ci ratio: 2.010630e-01	ci left: 2.569955e-04	ci right 3.151418e-04	k: 379	n:1330000
Cons ci ratio: 2.742253e-03	ci left: 6.049095e-01	ci right 6.065713e-01	k: 805635	n:1330000
KS ci ratio: 2.010630e-01	ci left: 2.569955e-04	ci right 3.151418e-04	k: 379	n:1330000
SORBS1   1330000 perm   891 sec   (1492 perm/sec)   p_kst 2.849624e-04   p_cons 6.057406e-01   p_joint 2.849624e-04

Joint ci ratio: 2.005360e-01	ci left: 2.564951e-04	ci right 3.143575e-04	k: 381	n:1340000
Cons ci ratio: 2.732042e-03	ci left: 6.049056e-01	ci right 6.065612e-01	k: 811683	n:1340000
KS ci ratio: 2.005360e-01	ci left: 2.564951e-04	ci right 3.143575e-04	k: 381	n:1340000
SORBS1   1340000 perm   903 sec   (1484 perm/sec)   p_kst 2.843284e-04   p_cons 6.057336e-01   p_joint 2.843284e-04

Joint ci ratio: 2.002742e-01	ci left: 2.552987e-04	ci right 3.128068e-04	k: 382	n:1350000
Cons ci ratio: 2.722041e-03	ci left: 6.048847e-01	ci right 6.065341e-01	k: 817708	n:1350000
KS ci ratio: 2.002742e-01	ci left: 2.552987e-04	ci right 3.128068e-04	k: 382	n:1350000
SORBS1   1350000 perm   914 sec   (1476 perm/sec)   p_kst 2.829630e-04   p_cons 6.057096e-01   p_joint 2.829630e-04

Joint ci ratio: 1.992364e-01	ci left: 2.562156e-04	ci right 3.135948e-04	k: 386	n:1360000
Cons ci ratio: 2.712045e-03	ci left: 6.048825e-01	ci right 6.065259e-01	k: 823758	n:1360000
KS ci ratio: 1.992364e-01	ci left: 2.562156e-04	ci right 3.135948e-04	k: 386	n:1360000
SORBS1   1360000 perm   926 sec   (1468 perm/sec)   p_kst 2.838235e-04   p_cons 6.057044e-01   p_joint 2.838235e-04

Joint ci ratio: 1.979615e-01	ci left: 2.578136e-04	ci right 3.151366e-04	k: 391	n:1370000
Cons ci ratio: 2.701836e-03	ci left: 6.049373e-01	ci right 6.065747e-01	k: 829886	n:1370000
KS ci ratio: 1.979615e-01	ci left: 2.578136e-04	ci right 3.151366e-04	k: 391	n:1370000
SORBS1   1370000 perm   938 sec   (1461 perm/sec)   p_kst 2.854015e-04   p_cons 6.057562e-01   p_joint 2.854015e-04

Joint ci ratio: 1.969591e-01	ci left: 2.587007e-04	ci right 3.158947e-04	k: 395	n:1380000
Cons ci ratio: 2.691712e-03	ci left: 6.049964e-01	ci right 6.066278e-01	k: 836021	n:1380000
KS ci ratio: 1.969591e-01	ci left: 2.587007e-04	ci right 3.158947e-04	k: 395	n:1380000
SORBS1   1380000 perm   950 sec   (1453 perm/sec)   p_kst 2.862319e-04   p_cons 6.058123e-01   p_joint 2.862319e-04

Joint ci ratio: 1.962172e-01	ci left: 2.588915e-04	ci right 3.158864e-04	k: 398	n:1390000
Cons ci ratio: 2.682033e-03	ci left: 6.049957e-01	ci right 6.066212e-01	k: 842074	n:1390000
KS ci ratio: 1.962172e-01	ci left: 2.588915e-04	ci right 3.158864e-04	k: 398	n:1390000
SORBS1   1390000 perm   962 sec   (1445 perm/sec)   p_kst 2.863309e-04   p_cons 6.058086e-01   p_joint 2.863309e-04

Joint ci ratio: 1.962174e-01	ci left: 2.570423e-04	ci right 3.136301e-04	k: 398	n:1400000
Cons ci ratio: 2.672234e-03	ci left: 6.050350e-01	ci right 6.066546e-01	k: 848183	n:1400000
KS ci ratio: 1.962174e-01	ci left: 2.570423e-04	ci right 3.136301e-04	k: 398	n:1400000
SORBS1   1400000 perm   973 sec   (1438 perm/sec)   p_kst 2.842857e-04   p_cons 6.058450e-01   p_joint 2.842857e-04

Joint ci ratio: 1.952411e-01	ci left: 2.579172e-04	ci right 3.143815e-04	k: 402	n:1410000
Cons ci ratio: 2.662664e-03	ci left: 6.050517e-01	ci right 6.066656e-01	k: 854261	n:1410000
KS ci ratio: 1.952411e-01	ci left: 2.579172e-04	ci right 3.143815e-04	k: 402	n:1410000
SORBS1   1410000 perm   986 sec   (1431 perm/sec)   p_kst 2.851064e-04   p_cons 6.058589e-01   p_joint 2.851064e-04

Joint ci ratio: 1.947585e-01	ci left: 2.574405e-04	ci right 3.136447e-04	k: 404	n:1420000
Cons ci ratio: 2.652969e-03	ci left: 6.051091e-01	ci right 6.067172e-01	k: 860397	n:1420000
KS ci ratio: 1.947585e-01	ci left: 2.574405e-04	ci right 3.136447e-04	k: 404	n:1420000
SORBS1   1420000 perm   998 sec   (1423 perm/sec)   p_kst 2.845070e-04   p_cons 6.059134e-01   p_joint 2.845070e-04

Joint ci ratio: 1.938037e-01	ci left: 2.583014e-04	ci right 3.143845e-04	k: 408	n:1430000
Cons ci ratio: 2.643917e-03	ci left: 6.050684e-01	ci right 6.066710e-01	k: 866394	n:1430000
KS ci ratio: 1.938037e-01	ci left: 2.583014e-04	ci right 3.143845e-04	k: 408	n:1430000
SORBS1   1430000 perm   1010 sec   (1416 perm/sec)   p_kst 2.853147e-04   p_cons 6.058699e-01   p_joint 2.853147e-04

Joint ci ratio: 1.933317e-01	ci left: 2.578292e-04	ci right 3.136574e-04	k: 410	n:1440000
Cons ci ratio: 2.635325e-03	ci left: 6.049617e-01	ci right 6.065587e-01	k: 872295	n:1440000
KS ci ratio: 1.933317e-01	ci left: 2.578292e-04	ci right 3.136574e-04	k: 410	n:1440000
SORBS1   1440000 perm   1022 sec   (1409 perm/sec)   p_kst 2.847222e-04   p_cons 6.057604e-01   p_joint 2.847222e-04

Joint ci ratio: 1.928631e-01	ci left: 2.573637e-04	ci right 3.129401e-04	k: 412	n:1450000
Cons ci ratio: 2.626444e-03	ci left: 6.049240e-01	ci right 6.065156e-01	k: 878294	n:1450000
KS ci ratio: 1.928631e-01	ci left: 2.573637e-04	ci right 3.129401e-04	k: 412	n:1450000
SORBS1   1450000 perm   1034 sec   (1402 perm/sec)   p_kst 2.841379e-04   p_cons 6.057200e-01   p_joint 2.841379e-04

Joint ci ratio: 1.919357e-01	ci left: 2.582087e-04	ci right 3.136682e-04	k: 416	n:1460000
Cons ci ratio: 2.617363e-03	ci left: 6.049396e-01	ci right 6.065257e-01	k: 884370	n:1460000
KS ci ratio: 1.919357e-01	ci left: 2.582087e-04	ci right 3.136682e-04	k: 416	n:1460000
SORBS1   1460000 perm   1047 sec   (1395 perm/sec)   p_kst 2.849315e-04   p_cons 6.057329e-01   p_joint 2.849315e-04

Joint ci ratio: 1.910217e-01	ci left: 2.590429e-04	ci right 3.143858e-04	k: 420	n:1470000
Cons ci ratio: 2.608135e-03	ci left: 6.049993e-01	ci right 6.065799e-01	k: 890511	n:1470000
KS ci ratio: 1.910217e-01	ci left: 2.590429e-04	ci right 3.143858e-04	k: 420	n:1470000
SORBS1   1470000 perm   1059 sec   (1388 perm/sec)   p_kst 2.857143e-04   p_cons 6.057898e-01   p_joint 2.857143e-04

Joint ci ratio: 1.910219e-01	ci left: 2.572926e-04	ci right 3.122616e-04	k: 420	n:1480000
Cons ci ratio: 2.599488e-03	ci left: 6.049689e-01	ci right 6.065442e-01	k: 896520	n:1480000
KS ci ratio: 1.910219e-01	ci left: 2.572926e-04	ci right 3.122616e-04	k: 420	n:1480000
SORBS1   1480000 perm   1072 sec   (1381 perm/sec)   p_kst 2.837838e-04   p_cons 6.057568e-01   p_joint 2.837838e-04

Joint ci ratio: 1.903449e-01	ci left: 2.574831e-04	ci right 3.122753e-04	k: 423	n:1490000
Cons ci ratio: 2.590811e-03	ci left: 6.049604e-01	ci right 6.065304e-01	k: 902561	n:1490000
KS ci ratio: 1.903449e-01	ci left: 2.574831e-04	ci right 3.122753e-04	k: 423	n:1490000
SORBS1   1490000 perm   1084 sec   (1374 perm/sec)   p_kst 2.838926e-04   p_cons 6.057456e-01   p_joint 2.838926e-04

Joint ci ratio: 1.901209e-01	ci left: 2.564014e-04	ci right 3.108918e-04	k: 424	n:1500000
Cons ci ratio: 2.581957e-03	ci left: 6.050008e-01	ci right 6.065655e-01	k: 908675	n:1500000
KS ci ratio: 1.901209e-01	ci left: 2.564014e-04	ci right 3.108918e-04	k: 424	n:1500000
SORBS1   1500000 perm   1097 sec   (1367 perm/sec)   p_kst 2.826667e-04   p_cons 6.057833e-01   p_joint 2.826667e-04

Joint ci ratio: 1.896752e-01	ci left: 2.559649e-04	ci right 3.102204e-04	k: 426	n:1510000
Cons ci ratio: 2.573621e-03	ci left: 6.049611e-01	ci right 6.065206e-01	k: 914669	n:1510000
KS ci ratio: 1.896752e-01	ci left: 2.559649e-04	ci right 3.102204e-04	k: 426	n:1510000
SORBS1   1510000 perm   1110 sec   (1361 perm/sec)   p_kst 2.821192e-04   p_cons 6.057411e-01   p_joint 2.821192e-04

Joint ci ratio: 1.896754e-01	ci left: 2.542809e-04	ci right 3.081795e-04	k: 426	n:1520000
Cons ci ratio: 2.565164e-03	ci left: 6.049594e-01	ci right 6.065139e-01	k: 920720	n:1520000
KS ci ratio: 1.896754e-01	ci left: 2.542809e-04	ci right 3.081795e-04	k: 426	n:1520000
SORBS1   1520000 perm   1122 sec   (1354 perm/sec)   p_kst 2.802632e-04   p_cons 6.057368e-01   p_joint 2.802632e-04

Joint ci ratio: 1.883565e-01	ci left: 2.563550e-04	ci right 3.102721e-04	k: 432	n:1530000
Cons ci ratio: 2.557027e-03	ci left: 6.049133e-01	ci right 6.064627e-01	k: 926703	n:1530000
KS ci ratio: 1.883565e-01	ci left: 2.563550e-04	ci right 3.102721e-04	k: 432	n:1530000
SORBS1   1530000 perm   1135 sec   (1348 perm/sec)   p_kst 2.823529e-04   p_cons 6.056882e-01   p_joint 2.823529e-04

Joint ci ratio: 1.874924e-01	ci left: 2.571656e-04	ci right 3.109768e-04	k: 436	n:1540000
Cons ci ratio: 2.548490e-03	ci left: 6.049575e-01	ci right 6.065018e-01	k: 932824	n:1540000
KS ci ratio: 1.874924e-01	ci left: 2.571656e-04	ci right 3.109768e-04	k: 436	n:1540000
SORBS1   1540000 perm   1148 sec   (1341 perm/sec)   p_kst 2.831169e-04   p_cons 6.057299e-01   p_joint 2.831169e-04

Joint ci ratio: 1.870648e-01	ci left: 2.567363e-04	ci right 3.103212e-04	k: 438	n:1550000
Cons ci ratio: 2.540328e-03	ci left: 6.049463e-01	ci right 6.064856e-01	k: 938860	n:1550000
KS ci ratio: 1.870648e-01	ci left: 2.567363e-04	ci right 3.103212e-04	k: 438	n:1550000
SORBS1   1550000 perm   1161 sec   (1335 perm/sec)   p_kst 2.825806e-04   p_cons 6.057161e-01   p_joint 2.825806e-04

Joint ci ratio: 1.864289e-01	ci left: 2.569237e-04	ci right 3.103449e-04	k: 441	n:1560000
Cons ci ratio: 2.531756e-03	ci left: 6.050275e-01	ci right 6.065618e-01	k: 945040	n:1560000
KS ci ratio: 1.864289e-01	ci left: 2.569237e-04	ci right 3.103449e-04	k: 441	n:1560000
SORBS1   1560000 perm   1174 sec   (1329 perm/sec)   p_kst 2.826923e-04   p_cons 6.057949e-01   p_joint 2.826923e-04

Joint ci ratio: 1.860086e-01	ci left: 2.565017e-04	ci right 3.097014e-04	k: 443	n:1570000
Cons ci ratio: 2.523613e-03	ci left: 6.050427e-01	ci right 6.065722e-01	k: 951118	n:1570000
KS ci ratio: 1.860086e-01	ci left: 2.565017e-04	ci right 3.097014e-04	k: 443	n:1570000
SORBS1   1570000 perm   1187 sec   (1322 perm/sec)   p_kst 2.821656e-04   p_cons 6.058076e-01   p_joint 2.821656e-04

Joint ci ratio: 1.853834e-01	ci left: 2.566888e-04	ci right 3.097281e-04	k: 446	n:1580000
Cons ci ratio: 2.515684e-03	ci left: 6.050318e-01	ci right 6.065564e-01	k: 957155	n:1580000
KS ci ratio: 1.853834e-01	ci left: 2.566888e-04	ci right 3.097281e-04	k: 446	n:1580000
SORBS1   1580000 perm   1201 sec   (1316 perm/sec)   p_kst 2.822785e-04   p_cons 6.057943e-01   p_joint 2.822785e-04

Joint ci ratio: 1.851764e-01	ci left: 2.556741e-04	ci right 3.084382e-04	k: 447	n:1590000
Cons ci ratio: 2.507955e-03	ci left: 6.049971e-01	ci right 6.065169e-01	k: 963154	n:1590000
KS ci ratio: 1.851764e-01	ci left: 2.556741e-04	ci right 3.084382e-04	k: 447	n:1590000
SORBS1   1590000 perm   1214 sec   (1310 perm/sec)   p_kst 2.811321e-04   p_cons 6.057572e-01   p_joint 2.811321e-04

Joint ci ratio: 1.845595e-01	ci left: 2.558644e-04	ci right 3.084722e-04	k: 450	n:1600000
Cons ci ratio: 2.499878e-03	ci left: 6.050429e-01	ci right 6.065579e-01	k: 969281	n:1600000
KS ci ratio: 1.845595e-01	ci left: 2.558644e-04	ci right 3.084722e-04	k: 450	n:1600000
SORBS1   1600000 perm   1227 sec   (1304 perm/sec)   p_kst 2.812500e-04   p_cons 6.058006e-01   p_joint 2.812500e-04

Joint ci ratio: 1.843553e-01	ci left: 2.548676e-04	ci right 3.072060e-04	k: 451	n:1610000
Cons ci ratio: 2.491857e-03	ci left: 6.050925e-01	ci right 6.066028e-01	k: 975415	n:1610000
KS ci ratio: 1.843553e-01	ci left: 2.548676e-04	ci right 3.072060e-04	k: 451	n:1610000
SORBS1   1610000 perm   1241 sec   (1297 perm/sec)   p_kst 2.801242e-04   p_cons 6.058478e-01   p_joint 2.801242e-04

Joint ci ratio: 1.837466e-01	ci left: 2.550609e-04	ci right 3.072467e-04	k: 454	n:1620000
Cons ci ratio: 2.484194e-03	ci left: 6.050871e-01	ci right 6.065927e-01	k: 981461	n:1620000
KS ci ratio: 1.837466e-01	ci left: 2.550609e-04	ci right 3.072467e-04	k: 454	n:1620000
SORBS1   1620000 perm   1254 sec   (1291 perm/sec)   p_kst 2.802469e-04   p_cons 6.058401e-01   p_joint 2.802469e-04

Joint ci ratio: 1.831438e-01	ci left: 2.552521e-04	ci right 3.072867e-04	k: 457	n:1630000
Cons ci ratio: 2.476484e-03	ci left: 6.051045e-01	ci right 6.066055e-01	k: 987544	n:1630000
KS ci ratio: 1.831438e-01	ci left: 2.552521e-04	ci right 3.072867e-04	k: 457	n:1630000
SORBS1   1630000 perm   1268 sec   (1286 perm/sec)   p_kst 2.803681e-04   p_cons 6.058552e-01   p_joint 2.803681e-04

Joint ci ratio: 1.827453e-01	ci left: 2.548593e-04	ci right 3.066883e-04	k: 459	n:1640000
Cons ci ratio: 2.468889e-03	ci left: 6.051132e-01	ci right 6.066096e-01	k: 993613	n:1640000
KS ci ratio: 1.827453e-01	ci left: 2.548593e-04	ci right 3.066883e-04	k: 459	n:1640000
SORBS1   1640000 perm   1281 sec   (1280 perm/sec)   p_kst 2.798780e-04   p_cons 6.058616e-01   p_joint 2.798780e-04

Joint ci ratio: 1.819558e-01	ci left: 2.556283e-04	ci right 3.073643e-04	k: 463	n:1650000
Cons ci ratio: 2.461454e-03	ci left: 6.051042e-01	ci right 6.065960e-01	k: 999653	n:1650000
KS ci ratio: 1.819558e-01	ci left: 2.556283e-04	ci right 3.073643e-04	k: 463	n:1650000
SORBS1   1650000 perm   1295 sec   (1274 perm/sec)   p_kst 2.806061e-04   p_cons 6.058503e-01   p_joint 2.806061e-04

Joint ci ratio: 1.813704e-01	ci left: 2.558134e-04	ci right 3.074021e-04	k: 466	n:1660000
Cons ci ratio: 2.453798e-03	ci left: 6.051513e-01	ci right 6.066387e-01	k: 1005786	n:1660000
KS ci ratio: 1.813704e-01	ci left: 2.558134e-04	ci right 3.074021e-04	k: 466	n:1660000
SORBS1   1660000 perm   1309 sec   (1268 perm/sec)   p_kst 2.807229e-04   p_cons 6.058952e-01   p_joint 2.807229e-04

Joint ci ratio: 1.811766e-01	ci left: 2.548533e-04	ci right 3.061873e-04	k: 467	n:1670000
Cons ci ratio: 2.446306e-03	ci left: 6.051800e-01	ci right 6.066628e-01	k: 1011889	n:1670000
KS ci ratio: 1.811766e-01	ci left: 2.548533e-04	ci right 3.061873e-04	k: 467	n:1670000
SORBS1   1670000 perm   1322 sec   (1263 perm/sec)   p_kst 2.796407e-04   p_cons 6.059216e-01   p_joint 2.796407e-04

Joint ci ratio: 1.809835e-01	ci left: 2.539045e-04	ci right 3.049870e-04	k: 468	n:1680000
Cons ci ratio: 2.439042e-03	ci left: 6.051767e-01	ci right 6.066551e-01	k: 1017939	n:1680000
KS ci ratio: 1.809835e-01	ci left: 2.539045e-04	ci right 3.049870e-04	k: 468	n:1680000
SORBS1   1680000 perm   1336 sec   (1257 perm/sec)   p_kst 2.785714e-04   p_cons 6.059161e-01   p_joint 2.785714e-04

Joint ci ratio: 1.804074e-01	ci left: 2.540970e-04	ci right 3.050376e-04	k: 471	n:1690000
Cons ci ratio: 2.431945e-03	ci left: 6.051533e-01	ci right 6.066274e-01	k: 1023955	n:1690000
KS ci ratio: 1.804074e-01	ci left: 2.540970e-04	ci right 3.050376e-04	k: 471	n:1690000
SORBS1   1690000 perm   1351 sec   (1251 perm/sec)   p_kst 2.786982e-04   p_cons 6.058905e-01   p_joint 2.786982e-04

Joint ci ratio: 1.798368e-01	ci left: 2.542874e-04	ci right 3.050875e-04	k: 474	n:1700000
Cons ci ratio: 2.424791e-03	ci left: 6.051538e-01	ci right 6.066235e-01	k: 1030011	n:1700000
KS ci ratio: 1.798368e-01	ci left: 2.542874e-04	ci right 3.050875e-04	k: 474	n:1700000
SORBS1   1700000 perm   1365 sec   (1246 perm/sec)   p_kst 2.788235e-04   p_cons 6.058888e-01   p_joint 2.788235e-04

Joint ci ratio: 1.788975e-01	ci left: 2.555931e-04	ci right 3.063585e-04	k: 479	n:1710000
Cons ci ratio: 2.417862e-03	ci left: 6.051221e-01	ci right 6.065875e-01	k: 1036012	n:1710000
KS ci ratio: 1.788975e-01	ci left: 2.555931e-04	ci right 3.063585e-04	k: 479	n:1710000
SORBS1   1710000 perm   1379 sec   (1240 perm/sec)   p_kst 2.801170e-04   p_cons 6.058550e-01   p_joint 2.801170e-04

Joint ci ratio: 1.783411e-01	ci left: 2.557733e-04	ci right 3.063994e-04	k: 482	n:1720000
Cons ci ratio: 2.410692e-03	ci left: 6.051501e-01	ci right 6.066112e-01	k: 1042115	n:1720000
KS ci ratio: 1.783411e-01	ci left: 2.557733e-04	ci right 3.063994e-04	k: 482	n:1720000
SORBS1   1720000 perm   1393 sec   (1235 perm/sec)   p_kst 2.802326e-04   p_cons 6.058808e-01   p_joint 2.802326e-04

Joint ci ratio: 1.776071e-01	ci left: 2.565040e-04	ci right 3.070433e-04	k: 486	n:1730000
Cons ci ratio: 2.403706e-03	ci left: 6.051540e-01	ci right 6.066109e-01	k: 1048177	n:1730000
KS ci ratio: 1.776071e-01	ci left: 2.565040e-04	ci right 3.070433e-04	k: 486	n:1730000
SORBS1   1730000 perm   1407 sec   (1229 perm/sec)   p_kst 2.809249e-04   p_cons 6.058827e-01   p_joint 2.809249e-04

Joint ci ratio: 1.768821e-01	ci left: 2.572267e-04	ci right 3.076794e-04	k: 490	n:1740000
Cons ci ratio: 2.396944e-03	ci left: 6.051252e-01	ci right 6.065779e-01	k: 1054182	n:1740000
KS ci ratio: 1.768821e-01	ci left: 2.572267e-04	ci right 3.076794e-04	k: 490	n:1740000
SORBS1   1740000 perm   1422 sec   (1224 perm/sec)   p_kst 2.816092e-04   p_cons 6.058517e-01   p_joint 2.816092e-04

Joint ci ratio: 1.763442e-01	ci left: 2.573953e-04	ci right 3.077112e-04	k: 493	n:1750000
Cons ci ratio: 2.390081e-03	ci left: 6.051281e-01	ci right 6.065767e-01	k: 1060242	n:1750000
KS ci ratio: 1.763442e-01	ci left: 2.573953e-04	ci right 3.077112e-04	k: 493	n:1750000
SORBS1   1750000 perm   1436 sec   (1218 perm/sec)   p_kst 2.817143e-04   p_cons 6.058526e-01   p_joint 2.817143e-04

Joint ci ratio: 1.759883e-01	ci left: 2.570191e-04	ci right 3.071493e-04	k: 495	n:1760000
Cons ci ratio: 2.383445e-03	ci left: 6.050975e-01	ci right 6.065420e-01	k: 1066243	n:1760000
KS ci ratio: 1.759883e-01	ci left: 2.570191e-04	ci right 3.071493e-04	k: 495	n:1760000
SORBS1   1760000 perm   1451 sec   (1213 perm/sec)   p_kst 2.812500e-04   p_cons 6.058199e-01   p_joint 2.812500e-04

Joint ci ratio: 1.758113e-01	ci left: 2.561071e-04	ci right 3.060038e-04	k: 496	n:1770000
Cons ci ratio: 2.376728e-03	ci left: 6.050943e-01	ci right 6.065347e-01	k: 1072292	n:1770000
KS ci ratio: 1.758113e-01	ci left: 2.561071e-04	ci right 3.060038e-04	k: 496	n:1770000
SORBS1   1770000 perm   1465 sec   (1208 perm/sec)   p_kst 2.802260e-04   p_cons 6.058147e-01   p_joint 2.802260e-04

Joint ci ratio: 1.756348e-01	ci left: 2.552054e-04	ci right 3.048712e-04	k: 497	n:1780000
Cons ci ratio: 2.370291e-03	ci left: 6.050462e-01	ci right 6.064826e-01	k: 1078261	n:1780000
KS ci ratio: 1.756348e-01	ci left: 2.552054e-04	ci right 3.048712e-04	k: 497	n:1780000
SORBS1   1780000 perm   1480 sec   (1203 perm/sec)   p_kst 2.792135e-04   p_cons 6.057646e-01   p_joint 2.792135e-04

Joint ci ratio: 1.754588e-01	ci left: 2.543138e-04	ci right 3.037512e-04	k: 498	n:1790000
Cons ci ratio: 2.363643e-03	ci left: 6.050518e-01	ci right 6.064842e-01	k: 1084325	n:1790000
KS ci ratio: 1.754588e-01	ci left: 2.543138e-04	ci right 3.037512e-04	k: 498	n:1790000
SORBS1   1790000 perm   1495 sec   (1198 perm/sec)   p_kst 2.782123e-04   p_cons 6.057682e-01   p_joint 2.782123e-04

Joint ci ratio: 1.751083e-01	ci left: 2.539633e-04	ci right 3.032235e-04	k: 500	n:1800000
Cons ci ratio: 2.356950e-03	ci left: 6.050779e-01	ci right 6.065062e-01	k: 1090426	n:1800000
KS ci ratio: 1.751083e-01	ci left: 2.539633e-04	ci right 3.032235e-04	k: 500	n:1800000
SORBS1   1800000 perm   1509 sec   (1193 perm/sec)   p_kst 2.777778e-04   p_cons 6.057922e-01   p_joint 2.777778e-04

Joint ci ratio: 1.742408e-01	ci left: 2.552018e-04	ci right 3.044313e-04	k: 505	n:1810000
Cons ci ratio: 2.350459e-03	ci left: 6.050738e-01	ci right 6.064982e-01	k: 1096473	n:1810000
KS ci ratio: 1.742408e-01	ci left: 2.552018e-04	ci right 3.044313e-04	k: 505	n:1810000
SORBS1   1810000 perm   1524 sec   (1188 perm/sec)   p_kst 2.790055e-04   p_cons 6.057862e-01   p_joint 2.790055e-04

Joint ci ratio: 1.735561e-01	ci left: 2.559018e-04	ci right 3.050520e-04	k: 509	n:1820000
Cons ci ratio: 2.343944e-03	ci left: 6.050857e-01	ci right 6.065062e-01	k: 1102549	n:1820000
KS ci ratio: 1.735561e-01	ci left: 2.559018e-04	ci right 3.050520e-04	k: 509	n:1820000
SORBS1   1820000 perm   1539 sec   (1183 perm/sec)   p_kst 2.796703e-04   p_cons 6.057962e-01   p_joint 2.796703e-04

Joint ci ratio: 1.732169e-01	ci left: 2.555489e-04	ci right 3.045253e-04	k: 511	n:1830000
Cons ci ratio: 2.337628e-03	ci left: 6.050680e-01	ci right 6.064846e-01	k: 1108571	n:1830000
KS ci ratio: 1.732169e-01	ci left: 2.555489e-04	ci right 3.045253e-04	k: 511	n:1830000
SORBS1   1830000 perm   1554 sec   (1177 perm/sec)   p_kst 2.792350e-04   p_cons 6.057765e-01   p_joint 2.792350e-04

Joint ci ratio: 1.723771e-01	ci left: 2.567599e-04	ci right 3.057051e-04	k: 516	n:1840000
Cons ci ratio: 2.331197e-03	ci left: 6.050842e-01	ci right 6.064970e-01	k: 1114655	n:1840000
KS ci ratio: 1.723771e-01	ci left: 2.567599e-04	ci right 3.057051e-04	k: 516	n:1840000
SORBS1   1840000 perm   1569 sec   (1172 perm/sec)   p_kst 2.804348e-04   p_cons 6.057908e-01   p_joint 2.804348e-04

Joint ci ratio: 1.715495e-01	ci left: 2.579584e-04	ci right 3.068715e-04	k: 521	n:1850000
Cons ci ratio: 2.325011e-03	ci left: 6.050608e-01	ci right 6.064697e-01	k: 1120666	n:1850000
KS ci ratio: 1.715495e-01	ci left: 2.579584e-04	ci right 3.068715e-04	k: 521	n:1850000
SORBS1   1850000 perm   1585 sec   (1167 perm/sec)   p_kst 2.816216e-04   p_cons 6.057654e-01   p_joint 2.816216e-04

Joint ci ratio: 1.707336e-01	ci left: 2.591446e-04	ci right 3.080248e-04	k: 526	n:1860000
Cons ci ratio: 2.318849e-03	ci left: 6.050430e-01	ci right 6.064481e-01	k: 1126687	n:1860000
KS ci ratio: 1.707336e-01	ci left: 2.591446e-04	ci right 3.080248e-04	k: 526	n:1860000
SORBS1   1860000 perm   1600 sec   (1163 perm/sec)   p_kst 2.827957e-04   p_cons 6.057457e-01   p_joint 2.827957e-04

Joint ci ratio: 1.704106e-01	ci left: 2.587826e-04	ci right 3.074928e-04	k: 528	n:1870000
Cons ci ratio: 2.312874e-03	ci left: 6.049965e-01	ci right 6.063979e-01	k: 1132654	n:1870000
KS ci ratio: 1.704106e-01	ci left: 2.587826e-04	ci right 3.074928e-04	k: 528	n:1870000
SORBS1   1870000 perm   1616 sec   (1157 perm/sec)   p_kst 2.823529e-04   p_cons 6.056973e-01   p_joint 2.823529e-04

Joint ci ratio: 1.700894e-01	ci left: 2.584246e-04	ci right 3.069663e-04	k: 530	n:1880000
Cons ci ratio: 2.306751e-03	ci left: 6.049909e-01	ci right 6.063886e-01	k: 1138697	n:1880000
KS ci ratio: 1.700894e-01	ci left: 2.584246e-04	ci right 3.069663e-04	k: 530	n:1880000
SORBS1   1880000 perm   1631 sec   (1153 perm/sec)   p_kst 2.819149e-04   p_cons 6.056899e-01   p_joint 2.819149e-04

Joint ci ratio: 1.696110e-01	ci left: 2.585771e-04	ci right 3.069968e-04	k: 533	n:1890000
Cons ci ratio: 2.300801e-03	ci left: 6.049595e-01	ci right 6.063535e-01	k: 1144691	n:1890000
KS ci ratio: 1.696110e-01	ci left: 2.585771e-04	ci right 3.069968e-04	k: 533	n:1890000
SORBS1   1890000 perm   1647 sec   (1148 perm/sec)   p_kst 2.820106e-04   p_cons 6.056566e-01   p_joint 2.820106e-04

Joint ci ratio: 1.689792e-01	ci left: 2.592323e-04	ci right 3.075754e-04	k: 537	n:1900000
Cons ci ratio: 2.294777e-03	ci left: 6.049531e-01	ci right 6.063434e-01	k: 1150732	n:1900000
KS ci ratio: 1.689792e-01	ci left: 2.592323e-04	ci right 3.075754e-04	k: 537	n:1900000
SORBS1   1900000 perm   1662 sec   (1143 perm/sec)   p_kst 2.826316e-04   p_cons 6.056484e-01   p_joint 2.826316e-04

Joint ci ratio: 1.680446e-01	ci left: 2.608839e-04	ci right 3.092388e-04	k: 543	n:1910000
Cons ci ratio: 2.288620e-03	ci left: 6.049845e-01	ci right 6.063712e-01	k: 1156845	n:1910000
KS ci ratio: 1.680446e-01	ci left: 2.608839e-04	ci right 3.092388e-04	k: 543	n:1910000
SORBS1   1910000 perm   1678 sec   (1138 perm/sec)   p_kst 2.842932e-04   p_cons 6.056780e-01   p_joint 2.842932e-04

Joint ci ratio: 1.677366e-01	ci left: 2.605231e-04	ci right 3.087136e-04	k: 545	n:1920000
Cons ci ratio: 2.282632e-03	ci left: 6.049906e-01	ci right 6.063737e-01	k: 1162910	n:1920000
KS ci ratio: 1.677366e-01	ci left: 2.605231e-04	ci right 3.087136e-04	k: 545	n:1920000
SORBS1   1920000 perm   1693 sec   (1134 perm/sec)   p_kst 2.838542e-04   p_cons 6.056823e-01   p_joint 2.838542e-04

Joint ci ratio: 1.674303e-01	ci left: 2.601660e-04	ci right 3.081937e-04	k: 547	n:1930000
Cons ci ratio: 2.276851e-03	ci left: 6.049630e-01	ci right 6.063424e-01	k: 1168910	n:1930000
KS ci ratio: 1.674303e-01	ci left: 2.601660e-04	ci right 3.081937e-04	k: 547	n:1930000
SORBS1   1930000 perm   1709 sec   (1129 perm/sec)   p_kst 2.834197e-04   p_cons 6.056528e-01   p_joint 2.834197e-04

Joint ci ratio: 1.671256e-01	ci left: 2.598127e-04	ci right 3.076792e-04	k: 549	n:1940000
Cons ci ratio: 2.270928e-03	ci left: 6.049748e-01	ci right 6.063507e-01	k: 1174986	n:1940000
KS ci ratio: 1.671256e-01	ci left: 2.598127e-04	ci right 3.076792e-04	k: 549	n:1940000
SORBS1   1940000 perm   1725 sec   (1125 perm/sec)   p_kst 2.829897e-04   p_cons 6.056629e-01   p_joint 2.829897e-04

Joint ci ratio: 1.669740e-01	ci left: 2.589717e-04	ci right 3.066356e-04	k: 550	n:1950000
Cons ci ratio: 2.264887e-03	ci left: 6.050208e-01	ci right 6.063932e-01	k: 1181129	n:1950000
KS ci ratio: 1.669740e-01	ci left: 2.589717e-04	ci right 3.066356e-04	k: 550	n:1950000
SORBS1   1950000 perm   1741 sec   (1120 perm/sec)   p_kst 2.820513e-04   p_cons 6.057072e-01   p_joint 2.820513e-04

Joint ci ratio: 1.668227e-01	ci left: 2.581393e-04	ci right 3.056026e-04	k: 551	n:1960000
Cons ci ratio: 2.259201e-03	ci left: 6.050016e-01	ci right 6.063705e-01	k: 1187145	n:1960000
KS ci ratio: 1.668227e-01	ci left: 2.581393e-04	ci right 3.056026e-04	k: 551	n:1960000
SORBS1   1960000 perm   1757 sec   (1115 perm/sec)   p_kst 2.811224e-04   p_cons 6.056862e-01   p_joint 2.811224e-04

Joint ci ratio: 1.663713e-01	ci left: 2.582883e-04	ci right 3.056376e-04	k: 554	n:1970000
Cons ci ratio: 2.253433e-03	ci left: 6.050090e-01	ci right 6.063744e-01	k: 1193213	n:1970000
KS ci ratio: 1.663713e-01	ci left: 2.582883e-04	ci right 3.056376e-04	k: 554	n:1970000
SORBS1   1970000 perm   1773 sec   (1111 perm/sec)   p_kst 2.812183e-04   p_cons 6.056919e-01   p_joint 2.812183e-04

Joint ci ratio: 1.660723e-01	ci left: 2.579519e-04	ci right 3.051461e-04	k: 556	n:1980000
Cons ci ratio: 2.247719e-03	ci left: 6.050143e-01	ci right 6.063763e-01	k: 1199277	n:1980000
KS ci ratio: 1.660723e-01	ci left: 2.579519e-04	ci right 3.051461e-04	k: 556	n:1980000
SORBS1   1980000 perm   1789 sec   (1107 perm/sec)   p_kst 2.808081e-04   p_cons 6.056955e-01   p_joint 2.808081e-04

Joint ci ratio: 1.657750e-01	ci left: 2.576189e-04	ci right 3.046594e-04	k: 558	n:1990000
Cons ci ratio: 2.242095e-03	ci left: 6.050095e-01	ci right 6.063680e-01	k: 1205321	n:1990000
KS ci ratio: 1.657750e-01	ci left: 2.576189e-04	ci right 3.046594e-04	k: 558	n:1990000
SORBS1   1990000 perm   1805 sec   (1102 perm/sec)   p_kst 2.804020e-04   p_cons 6.056889e-01   p_joint 2.804020e-04

Joint ci ratio: 1.651850e-01	ci left: 2.582480e-04	ci right 3.052188e-04	k: 562	n:2000000
Cons ci ratio: 2.236286e-03	ci left: 6.050533e-01	ci right 6.064084e-01	k: 1211462	n:2000000
KS ci ratio: 1.651850e-01	ci left: 2.582480e-04	ci right 3.052188e-04	k: 562	n:2000000
SORBS1   2000000 perm   1822 sec   (1098 perm/sec)   p_kst 2.810000e-04   p_cons 6.057310e-01   p_joint 2.810000e-04

Joint ci ratio: 1.641674e-01	ci left: 2.603023e-04	ci right 3.073263e-04	k: 569	n:2010000
Cons ci ratio: 2.230856e-03	ci left: 6.050250e-01	ci right 6.063767e-01	k: 1217459	n:2010000
KS ci ratio: 1.641674e-01	ci left: 2.603023e-04	ci right 3.073263e-04	k: 569	n:2010000
SORBS1   2010000 perm   1838 sec   (1094 perm/sec)   p_kst 2.830846e-04   p_cons 6.057010e-01   p_joint 2.830846e-04

Joint ci ratio: 1.640237e-01	ci left: 2.594884e-04	ci right 3.063202e-04	k: 570	n:2020000
Cons ci ratio: 2.225357e-03	ci left: 6.050202e-01	ci right 6.063686e-01	k: 1223503	n:2020000
KS ci ratio: 1.640237e-01	ci left: 2.594884e-04	ci right 3.063202e-04	k: 570	n:2020000
SORBS1   2020000 perm   1854 sec   (1089 perm/sec)   p_kst 2.821782e-04   p_cons 6.056946e-01   p_joint 2.821782e-04

Joint ci ratio: 1.635945e-01	ci left: 2.596274e-04	ci right 3.063496e-04	k: 573	n:2030000
Cons ci ratio: 2.219981e-03	ci left: 6.049978e-01	ci right 6.063428e-01	k: 1229511	n:2030000
KS ci ratio: 1.635945e-01	ci left: 2.596274e-04	ci right 3.063496e-04	k: 573	n:2030000
SORBS1   2030000 perm   1871 sec   (1085 perm/sec)   p_kst 2.822660e-04   p_cons 6.056704e-01   p_joint 2.822660e-04

Joint ci ratio: 1.631686e-01	ci left: 2.597652e-04	ci right 3.063786e-04	k: 576	n:2040000
Cons ci ratio: 2.214705e-03	ci left: 6.049623e-01	ci right 6.063041e-01	k: 1235492	n:2040000
KS ci ratio: 1.631686e-01	ci left: 2.597652e-04	ci right 3.063786e-04	k: 576	n:2040000
SORBS1   2040000 perm   1887 sec   (1081 perm/sec)   p_kst 2.823529e-04   p_cons 6.056333e-01   p_joint 2.823529e-04

Joint ci ratio: 1.624661e-01	ci left: 2.608377e-04	ci right 3.074224e-04	k: 581	n:2050000
Cons ci ratio: 2.209280e-03	ci left: 6.049677e-01	ci right 6.063062e-01	k: 1241556	n:2050000
KS ci ratio: 1.624661e-01	ci left: 2.608377e-04	ci right 3.074224e-04	k: 581	n:2050000
SORBS1   2050000 perm   1904 sec   (1077 perm/sec)   p_kst 2.834146e-04   p_cons 6.056371e-01   p_joint 2.834146e-04

Joint ci ratio: 1.624662e-01	ci left: 2.595715e-04	ci right 3.059300e-04	k: 581	n:2060000
Cons ci ratio: 2.203874e-03	ci left: 6.049774e-01	ci right 6.063126e-01	k: 1247629	n:2060000
KS ci ratio: 1.624662e-01	ci left: 2.595715e-04	ci right 3.059300e-04	k: 581	n:2060000
SORBS1   2060000 perm   1920 sec   (1073 perm/sec)   p_kst 2.820388e-04   p_cons 6.056451e-01   p_joint 2.820388e-04

Joint ci ratio: 1.620491e-01	ci left: 2.597079e-04	ci right 3.059602e-04	k: 584	n:2070000
Cons ci ratio: 2.198432e-03	ci left: 6.050034e-01	ci right 6.063354e-01	k: 1253736	n:2070000
KS ci ratio: 1.620491e-01	ci left: 2.597079e-04	ci right 3.059602e-04	k: 584	n:2070000
SORBS1   2070000 perm   1937 sec   (1069 perm/sec)   p_kst 2.821256e-04   p_cons 6.056696e-01   p_joint 2.821256e-04

Joint ci ratio: 1.617728e-01	ci left: 2.593819e-04	ci right 3.054897e-04	k: 586	n:2080000
Cons ci ratio: 2.193210e-03	ci left: 6.049898e-01	ci right 6.063186e-01	k: 1259761	n:2080000
KS ci ratio: 1.617728e-01	ci left: 2.593819e-04	ci right 3.054897e-04	k: 586	n:2080000
SORBS1   2080000 perm   1954 sec   (1064 perm/sec)   p_kst 2.817308e-04   p_cons 6.056543e-01   p_joint 2.817308e-04

Joint ci ratio: 1.614980e-01	ci left: 2.590591e-04	ci right 3.050236e-04	k: 588	n:2090000
Cons ci ratio: 2.187917e-03	ci left: 6.050002e-01	ci right 6.063258e-01	k: 1265836	n:2090000
KS ci ratio: 1.614980e-01	ci left: 2.590591e-04	ci right 3.050236e-04	k: 588	n:2090000
SORBS1   2090000 perm   1971 sec   (1060 perm/sec)   p_kst 2.813397e-04   p_cons 6.056632e-01   p_joint 2.813397e-04

Joint ci ratio: 1.605466e-01	ci left: 2.610245e-04	ci right 3.070387e-04	k: 595	n:2100000
Cons ci ratio: 2.182946e-03	ci left: 6.049481e-01	ci right 6.062706e-01	k: 1271780	n:2100000
KS ci ratio: 1.605466e-01	ci left: 2.610245e-04	ci right 3.070387e-04	k: 595	n:2100000
SORBS1   2100000 perm   1988 sec   (1056 perm/sec)   p_kst 2.833333e-04   p_cons 6.056095e-01   p_joint 2.833333e-04

Joint ci ratio: 1.601441e-01	ci left: 2.611522e-04	ci right 3.070623e-04	k: 598	n:2110000
Cons ci ratio: 2.177685e-03	ci left: 6.049677e-01	ci right 6.062870e-01	k: 1277874	n:2110000
KS ci ratio: 1.601441e-01	ci left: 2.611522e-04	ci right 3.070623e-04	k: 598	n:2110000
SORBS1   2110000 perm   2005 sec   (1053 perm/sec)   p_kst 2.834123e-04   p_cons 6.056275e-01   p_joint 2.834123e-04

Joint ci ratio: 1.600106e-01	ci left: 2.603731e-04	ci right 3.061045e-04	k: 599	n:2120000
Cons ci ratio: 2.172544e-03	ci left: 6.049691e-01	ci right 6.062853e-01	k: 1283930	n:2120000
KS ci ratio: 1.600106e-01	ci left: 2.603731e-04	ci right 3.061045e-04	k: 599	n:2120000
SORBS1   2120000 perm   2022 sec   (1049 perm/sec)   p_kst 2.825472e-04   p_cons 6.056274e-01   p_joint 2.825472e-04

Joint ci ratio: 1.597447e-01	ci left: 2.600521e-04	ci right 3.056439e-04	k: 601	n:2130000
Cons ci ratio: 2.167381e-03	ci left: 6.049832e-01	ci right 6.062963e-01	k: 1290013	n:2130000
KS ci ratio: 1.597447e-01	ci left: 2.600521e-04	ci right 3.056439e-04	k: 601	n:2130000
SORBS1   2130000 perm   2039 sec   (1044 perm/sec)   p_kst 2.821596e-04   p_cons 6.056399e-01   p_joint 2.821596e-04

Joint ci ratio: 1.594800e-01	ci left: 2.597341e-04	ci right 3.051875e-04	k: 603	n:2140000
Cons ci ratio: 2.162225e-03	ci left: 6.050037e-01	ci right 6.063137e-01	k: 1296110	n:2140000
KS ci ratio: 1.594800e-01	ci left: 2.597341e-04	ci right 3.051875e-04	k: 603	n:2140000
SORBS1   2140000 perm   2057 sec   (1040 perm/sec)   p_kst 2.817757e-04   p_cons 6.056589e-01   p_joint 2.817757e-04

Joint ci ratio: 1.588239e-01	ci left: 2.607590e-04	ci right 3.061861e-04	k: 608	n:2150000
Cons ci ratio: 2.157186e-03	ci left: 6.050064e-01	ci right 6.063133e-01	k: 1302169	n:2150000
KS ci ratio: 1.588239e-01	ci left: 2.607590e-04	ci right 3.061861e-04	k: 608	n:2150000
SORBS1   2150000 perm   2074 sec   (1036 perm/sec)   p_kst 2.827907e-04   p_cons 6.056600e-01   p_joint 2.827907e-04

Joint ci ratio: 1.581758e-01	ci left: 2.617748e-04	ci right 3.071752e-04	k: 613	n:2160000
Cons ci ratio: 2.152248e-03	ci left: 6.049942e-01	ci right 6.062981e-01	k: 1308196	n:2160000
KS ci ratio: 1.581758e-01	ci left: 2.617748e-04	ci right 3.071752e-04	k: 613	n:2160000
SORBS1   2160000 perm   2092 sec   (1033 perm/sec)   p_kst 2.837963e-04   p_cons 6.056463e-01   p_joint 2.837963e-04

Joint ci ratio: 1.580472e-01	ci left: 2.610111e-04	ci right 3.062387e-04	k: 614	n:2170000
Cons ci ratio: 2.147181e-03	ci left: 6.050185e-01	ci right 6.063194e-01	k: 1314302	n:2170000
KS ci ratio: 1.580472e-01	ci left: 2.610111e-04	ci right 3.062387e-04	k: 614	n:2170000
SORBS1   2170000 perm   2109 sec   (1029 perm/sec)   p_kst 2.829493e-04   p_cons 6.056691e-01   p_joint 2.829493e-04

Joint ci ratio: 1.577909e-01	ci left: 2.606950e-04	ci right 3.057876e-04	k: 616	n:2180000
Cons ci ratio: 2.142174e-03	ci left: 6.050371e-01	ci right 6.063351e-01	k: 1320396	n:2180000
KS ci ratio: 1.577909e-01	ci left: 2.606950e-04	ci right 3.057876e-04	k: 616	n:2180000
SORBS1   2180000 perm   2127 sec   (1025 perm/sec)   p_kst 2.825688e-04   p_cons 6.056862e-01   p_joint 2.825688e-04

Joint ci ratio: 1.576632e-01	ci left: 2.599432e-04	ci right 3.048659e-04	k: 617	n:2190000
Cons ci ratio: 2.137247e-03	ci left: 6.050455e-01	ci right 6.063405e-01	k: 1326468	n:2190000
KS ci ratio: 1.576632e-01	ci left: 2.599432e-04	ci right 3.048659e-04	k: 617	n:2190000
SORBS1   2190000 perm   2145 sec   (1021 perm/sec)   p_kst 2.817352e-04   p_cons 6.056932e-01   p_joint 2.817352e-04

Joint ci ratio: 1.575359e-01	ci left: 2.591982e-04	ci right 3.039526e-04	k: 618	n:2200000
Cons ci ratio: 2.132331e-03	ci left: 6.050589e-01	ci right 6.063509e-01	k: 1332551	n:2200000
KS ci ratio: 1.575359e-01	ci left: 2.591982e-04	ci right 3.039526e-04	k: 618	n:2200000
SORBS1   2200000 perm   2163 sec   (1017 perm/sec)   p_kst 2.809091e-04   p_cons 6.057050e-01   p_joint 2.809091e-04

Joint ci ratio: 1.571555e-01	ci left: 2.593294e-04	ci right 3.039881e-04	k: 621	n:2210000
Cons ci ratio: 2.127570e-03	ci left: 6.050449e-01	ci right 6.063340e-01	k: 1338574	n:2210000
KS ci ratio: 1.571555e-01	ci left: 2.593294e-04	ci right 3.039881e-04	k: 621	n:2210000
SORBS1   2210000 perm   2181 sec   (1014 perm/sec)   p_kst 2.809955e-04   p_cons 6.056896e-01   p_joint 2.809955e-04

Joint ci ratio: 1.567779e-01	ci left: 2.594595e-04	ci right 3.040232e-04	k: 624	n:2220000
Cons ci ratio: 2.122808e-03	ci left: 6.050383e-01	ci right 6.063245e-01	k: 1344613	n:2220000
KS ci ratio: 1.567779e-01	ci left: 2.594595e-04	ci right 3.040232e-04	k: 624	n:2220000
SORBS1   2220000 perm   2198 sec   (1010 perm/sec)   p_kst 2.810811e-04   p_cons 6.056815e-01   p_joint 2.810811e-04

Joint ci ratio: 1.566527e-01	ci left: 2.587269e-04	ci right 3.031259e-04	k: 625	n:2230000
Cons ci ratio: 2.118105e-03	ci left: 6.050259e-01	ci right 6.063092e-01	k: 1350639	n:2230000
KS ci ratio: 1.566527e-01	ci left: 2.587269e-04	ci right 3.031259e-04	k: 625	n:2230000
SORBS1   2230000 perm   2216 sec   (1006 perm/sec)   p_kst 2.802691e-04   p_cons 6.056677e-01   p_joint 2.802691e-04

Joint ci ratio: 1.561545e-01	ci left: 2.592877e-04	ci right 3.036282e-04	k: 629	n:2240000
Cons ci ratio: 2.113276e-03	ci left: 6.050489e-01	ci right 6.063294e-01	k: 1356744	n:2240000
KS ci ratio: 1.561545e-01	ci left: 2.592877e-04	ci right 3.036282e-04	k: 629	n:2240000
SORBS1   2240000 perm   2234 sec   (1002 perm/sec)   p_kst 2.808036e-04   p_cons 6.056893e-01   p_joint 2.808036e-04

Joint ci ratio: 1.560308e-01	ci left: 2.585624e-04	ci right 3.027405e-04	k: 630	n:2250000
Cons ci ratio: 2.108549e-03	ci left: 6.050562e-01	ci right 6.063338e-01	k: 1362814	n:2250000
KS ci ratio: 1.560308e-01	ci left: 2.585624e-04	ci right 3.027405e-04	k: 630	n:2250000
SORBS1   2250000 perm   2253 sec   (999 perm/sec)   p_kst 2.800000e-04   p_cons 6.056951e-01   p_joint 2.800000e-04

Joint ci ratio: 1.556612e-01	ci left: 2.586939e-04	ci right 3.027801e-04	k: 633	n:2260000
Cons ci ratio: 2.103970e-03	ci left: 6.050368e-01	ci right 6.063116e-01	k: 1368824	n:2260000
KS ci ratio: 1.556612e-01	ci left: 2.586939e-04	ci right 3.027801e-04	k: 633	n:2260000
SORBS1   2260000 perm   2271 sec   (995 perm/sec)   p_kst 2.800885e-04   p_cons 6.056743e-01   p_joint 2.800885e-04

Joint ci ratio: 1.555387e-01	ci left: 2.579777e-04	ci right 3.019040e-04	k: 634	n:2270000
Cons ci ratio: 2.099381e-03	ci left: 6.050269e-01	ci right 6.062988e-01	k: 1374855	n:2270000
KS ci ratio: 1.555387e-01	ci left: 2.579777e-04	ci right 3.019040e-04	k: 634	n:2270000
SORBS1   2270000 perm   2289 sec   (992 perm/sec)   p_kst 2.792952e-04   p_cons 6.056630e-01   p_joint 2.792952e-04

Joint ci ratio: 1.550510e-01	ci left: 2.585324e-04	ci right 3.024023e-04	k: 638	n:2280000
Cons ci ratio: 2.094902e-03	ci left: 6.049986e-01	ci right 6.062678e-01	k: 1380844	n:2280000
KS ci ratio: 1.550510e-01	ci left: 2.585324e-04	ci right 3.024023e-04	k: 638	n:2280000
SORBS1   2280000 perm   2307 sec   (988 perm/sec)   p_kst 2.798246e-04   p_cons 6.056333e-01   p_joint 2.798246e-04

Joint ci ratio: 1.546883e-01	ci left: 2.586627e-04	ci right 3.024426e-04	k: 641	n:2290000
Cons ci ratio: 2.090430e-03	ci left: 6.049754e-01	ci right 6.062418e-01	k: 1386844	n:2290000
KS ci ratio: 1.546883e-01	ci left: 2.586627e-04	ci right 3.024426e-04	k: 641	n:2290000
SORBS1   2290000 perm   2326 sec   (985 perm/sec)   p_kst 2.799127e-04   p_cons 6.056087e-01   p_joint 2.799127e-04

Joint ci ratio: 1.543282e-01	ci left: 2.587920e-04	ci right 3.024823e-04	k: 644	n:2300000
Cons ci ratio: 2.086005e-03	ci left: 6.049485e-01	ci right 6.062121e-01	k: 1392835	n:2300000
KS ci ratio: 1.543282e-01	ci left: 2.587920e-04	ci right 3.024823e-04	k: 644	n:2300000
SORBS1   2300000 perm   2344 sec   (981 perm/sec)   p_kst 2.800000e-04   p_cons 6.055804e-01   p_joint 2.800000e-04

Joint ci ratio: 1.537334e-01	ci left: 2.597528e-04	ci right 3.034207e-04	k: 649	n:2310000
Cons ci ratio: 2.081429e-03	ci left: 6.049625e-01	ci right 6.062234e-01	k: 1398920	n:2310000
KS ci ratio: 1.537334e-01	ci left: 2.597528e-04	ci right 3.034207e-04	k: 649	n:2310000
SORBS1   2310000 perm   2362 sec   (978 perm/sec)   p_kst 2.809524e-04   p_cons 6.055931e-01   p_joint 2.809524e-04

Joint ci ratio: 1.534974e-01	ci left: 2.594621e-04	ci right 3.030081e-04	k: 651	n:2320000
Cons ci ratio: 2.076941e-03	ci left: 6.049634e-01	ci right 6.062216e-01	k: 1404975	n:2320000
KS ci ratio: 1.534974e-01	ci left: 2.594621e-04	ci right 3.030081e-04	k: 651	n:2320000
SORBS1   2320000 perm   2381 sec   (974 perm/sec)   p_kst 2.806034e-04   p_cons 6.055927e-01   p_joint 2.806034e-04

Joint ci ratio: 1.530287e-01	ci left: 2.599995e-04	ci right 3.034901e-04	k: 655	n:2330000
Cons ci ratio: 2.072572e-03	ci left: 6.049434e-01	ci right 6.061989e-01	k: 1410981	n:2330000
KS ci ratio: 1.530287e-01	ci left: 2.599995e-04	ci right 3.034901e-04	k: 655	n:2330000
SORBS1   2330000 perm   2400 sec   (971 perm/sec)   p_kst 2.811159e-04   p_cons 6.055712e-01   p_joint 2.811159e-04

Joint ci ratio: 1.526800e-01	ci left: 2.601214e-04	ci right 3.035242e-04	k: 658	n:2340000
Cons ci ratio: 2.068291e-03	ci left: 6.049094e-01	ci right 6.061622e-01	k: 1416954	n:2340000
KS ci ratio: 1.526800e-01	ci left: 2.601214e-04	ci right 3.035242e-04	k: 658	n:2340000
SORBS1   2340000 perm   2419 sec   (968 perm/sec)   p_kst 2.811966e-04   p_cons 6.055359e-01   p_joint 2.811966e-04

Joint ci ratio: 1.525643e-01	ci left: 2.594237e-04	ci right 3.026744e-04	k: 659	n:2350000
Cons ci ratio: 2.063795e-03	ci left: 6.049318e-01	ci right 6.061820e-01	k: 1423059	n:2350000
KS ci ratio: 1.525643e-01	ci left: 2.594237e-04	ci right 3.026744e-04	k: 659	n:2350000
SORBS1   2350000 perm   2438 sec   (964 perm/sec)   p_kst 2.804255e-04   p_cons 6.055570e-01   p_joint 2.804255e-04

Joint ci ratio: 1.522188e-01	ci left: 2.595472e-04	ci right 3.027115e-04	k: 662	n:2360000
Cons ci ratio: 2.059368e-03	ci left: 6.049448e-01	ci right 6.061923e-01	k: 1429142	n:2360000
KS ci ratio: 1.522188e-01	ci left: 2.595472e-04	ci right 3.027115e-04	k: 662	n:2360000
SORBS1   2360000 perm   2457 sec   (961 perm/sec)   p_kst 2.805085e-04   p_cons 6.055686e-01   p_joint 2.805085e-04

Joint ci ratio: 1.519897e-01	ci left: 2.592638e-04	ci right 3.023102e-04	k: 664	n:2370000
Cons ci ratio: 2.054913e-03	ci left: 6.049707e-01	ci right 6.062155e-01	k: 1435256	n:2370000
KS ci ratio: 1.519897e-01	ci left: 2.592638e-04	ci right 3.023102e-04	k: 664	n:2370000
SORBS1   2370000 perm   2475 sec   (957 perm/sec)   p_kst 2.801688e-04   p_cons 6.055932e-01   p_joint 2.801688e-04

Joint ci ratio: 1.516480e-01	ci left: 2.593871e-04	ci right 3.023484e-04	k: 667	n:2380000
Cons ci ratio: 2.050623e-03	ci left: 6.049645e-01	ci right 6.062067e-01	k: 1441294	n:2380000
KS ci ratio: 1.516480e-01	ci left: 2.593871e-04	ci right 3.023484e-04	k: 667	n:2380000
SORBS1   2380000 perm   2494 sec   (954 perm/sec)   p_kst 2.802521e-04   p_cons 6.055857e-01   p_joint 2.802521e-04

Joint ci ratio: 1.515347e-01	ci left: 2.587043e-04	ci right 3.015176e-04	k: 668	n:2390000
Cons ci ratio: 2.046214e-03	ci left: 6.049926e-01	ci right 6.062322e-01	k: 1447414	n:2390000
KS ci ratio: 1.515347e-01	ci left: 2.587043e-04	ci right 3.015176e-04	k: 668	n:2390000
SORBS1   2390000 perm   2513 sec   (951 perm/sec)   p_kst 2.794979e-04   p_cons 6.056126e-01   p_joint 2.794979e-04

Joint ci ratio: 1.510837e-01	ci left: 2.592300e-04	ci right 3.019910e-04	k: 672	n:2400000
Cons ci ratio: 2.041968e-03	ci left: 6.049889e-01	ci right 6.062259e-01	k: 1453458	n:2400000
KS ci ratio: 1.510837e-01	ci left: 2.592300e-04	ci right 3.019910e-04	k: 672	n:2400000
SORBS1   2400000 perm   2532 sec   (948 perm/sec)   p_kst 2.800000e-04   p_cons 6.056075e-01   p_joint 2.800000e-04

Joint ci ratio: 1.508597e-01	ci left: 2.589529e-04	ci right 3.015991e-04	k: 674	n:2410000
Cons ci ratio: 2.037750e-03	ci left: 6.049847e-01	ci right 6.062192e-01	k: 1459501	n:2410000
KS ci ratio: 1.508597e-01	ci left: 2.589529e-04	ci right 3.015991e-04	k: 674	n:2410000
SORBS1   2410000 perm   2551 sec   (945 perm/sec)   p_kst 2.796680e-04   p_cons 6.056021e-01   p_joint 2.796680e-04

Joint ci ratio: 1.506367e-01	ci left: 2.586781e-04	ci right 3.012104e-04	k: 676	n:2420000
Cons ci ratio: 2.033575e-03	ci left: 6.049769e-01	ci right 6.062088e-01	k: 1465535	n:2420000
KS ci ratio: 1.506367e-01	ci left: 2.586781e-04	ci right 3.012104e-04	k: 676	n:2420000
SORBS1   2420000 perm   2571 sec   (941 perm/sec)   p_kst 2.793388e-04   p_cons 6.055930e-01   p_joint 2.793388e-04

Joint ci ratio: 1.501936e-01	ci left: 2.591977e-04	ci right 3.016789e-04	k: 680	n:2430000
Cons ci ratio: 2.029428e-03	ci left: 6.049683e-01	ci right 6.061977e-01	k: 1471567	n:2430000
KS ci ratio: 1.501936e-01	ci left: 2.591977e-04	ci right 3.016789e-04	k: 680	n:2430000
SORBS1   2430000 perm   2590 sec   (938 perm/sec)   p_kst 2.798354e-04   p_cons 6.055831e-01   p_joint 2.798354e-04

Joint ci ratio: 1.499736e-01	ci left: 2.589243e-04	ci right 3.012929e-04	k: 682	n:2440000
Cons ci ratio: 2.025275e-03	ci left: 6.049672e-01	ci right 6.061940e-01	k: 1477617	n:2440000
KS ci ratio: 1.499736e-01	ci left: 2.589243e-04	ci right 3.012929e-04	k: 682	n:2440000
SORBS1   2440000 perm   2610 sec   (935 perm/sec)   p_kst 2.795082e-04   p_cons 6.055807e-01   p_joint 2.795082e-04

Joint ci ratio: 1.496453e-01	ci left: 2.590461e-04	ci right 3.013335e-04	k: 685	n:2450000
Cons ci ratio: 2.021160e-03	ci left: 6.049632e-01	ci right 6.061876e-01	k: 1483660	n:2450000
KS ci ratio: 1.496453e-01	ci left: 2.590461e-04	ci right 3.013335e-04	k: 685	n:2450000
SORBS1   2450000 perm   2629 sec   (932 perm/sec)   p_kst 2.795918e-04   p_cons 6.055755e-01   p_joint 2.795918e-04

Joint ci ratio: 1.495364e-01	ci left: 2.583843e-04	ci right 3.005303e-04	k: 686	n:2460000
Cons ci ratio: 2.017014e-03	ci left: 6.049723e-01	ci right 6.061941e-01	k: 1489735	n:2460000
KS ci ratio: 1.495364e-01	ci left: 2.583843e-04	ci right 3.005303e-04	k: 686	n:2460000
SORBS1   2460000 perm   2648 sec   (929 perm/sec)   p_kst 2.788618e-04   p_cons 6.055833e-01   p_joint 2.788618e-04

Joint ci ratio: 1.493192e-01	ci left: 2.581177e-04	ci right 3.001535e-04	k: 688	n:2470000
Cons ci ratio: 2.012877e-03	ci left: 6.049853e-01	ci right 6.062047e-01	k: 1495820	n:2470000
KS ci ratio: 1.493192e-01	ci left: 2.581177e-04	ci right 3.001535e-04	k: 688	n:2470000
SORBS1   2470000 perm   2668 sec   (926 perm/sec)   p_kst 2.785425e-04   p_cons 6.055951e-01   p_joint 2.785425e-04

Joint ci ratio: 1.487803e-01	ci left: 2.590178e-04	ci right 3.010345e-04	k: 693	n:2480000
Cons ci ratio: 2.008959e-03	ci left: 6.049523e-01	ci right 6.061692e-01	k: 1501791	n:2480000
KS ci ratio: 1.487803e-01	ci left: 2.590178e-04	ci right 3.010345e-04	k: 693	n:2480000
SORBS1   2480000 perm   2687 sec   (923 perm/sec)   p_kst 2.794355e-04   p_cons 6.055609e-01   p_joint 2.794355e-04

Joint ci ratio: 1.483534e-01	ci left: 2.595243e-04	ci right 3.014916e-04	k: 697	n:2490000
Cons ci ratio: 2.005151e-03	ci left: 6.048986e-01	ci right 6.061132e-01	k: 1507710	n:2490000
KS ci ratio: 1.483534e-01	ci left: 2.595243e-04	ci right 3.014916e-04	k: 697	n:2490000
SORBS1   2490000 perm   2707 sec   (920 perm/sec)   p_kst 2.799197e-04   p_cons 6.055060e-01   p_joint 2.799197e-04

Joint ci ratio: 1.481413e-01	ci left: 2.592565e-04	ci right 3.011153e-04	k: 699	n:2500000
Cons ci ratio: 2.001068e-03	ci left: 6.049162e-01	ci right 6.061283e-01	k: 1513806	n:2500000
KS ci ratio: 1.481413e-01	ci left: 2.592565e-04	ci right 3.011153e-04	k: 699	n:2500000
SORBS1   2500000 perm   2727 sec   (917 perm/sec)   p_kst 2.796000e-04   p_cons 6.055224e-01   p_joint 2.796000e-04

Joint ci ratio: 1.480357e-01	ci left: 2.586073e-04	ci right 3.003288e-04	k: 700	n:2510000
Cons ci ratio: 1.997004e-03	ci left: 6.049353e-01	ci right 6.061449e-01	k: 1519906	n:2510000
KS ci ratio: 1.480357e-01	ci left: 2.586073e-04	ci right 3.003288e-04	k: 700	n:2510000
SORBS1   2510000 perm   2747 sec   (914 perm/sec)   p_kst 2.788845e-04   p_cons 6.055402e-01   p_joint 2.788845e-04

Joint ci ratio: 1.478249e-01	ci left: 2.583453e-04	ci right 2.999600e-04	k: 702	n:2520000
Cons ci ratio: 1.992864e-03	ci left: 6.049780e-01	ci right 6.061852e-01	k: 1526066	n:2520000
KS ci ratio: 1.478249e-01	ci left: 2.583453e-04	ci right 2.999600e-04	k: 702	n:2520000
SORBS1   2520000 perm   2767 sec   (911 perm/sec)   p_kst 2.785714e-04   p_cons 6.055817e-01   p_joint 2.785714e-04

Joint ci ratio: 1.476151e-01	ci left: 2.580855e-04	ci right 2.995941e-04	k: 704	n:2530000
Cons ci ratio: 1.988854e-03	ci left: 6.049955e-01	ci right 6.062003e-01	k: 1532163	n:2530000
KS ci ratio: 1.476151e-01	ci left: 2.580855e-04	ci right 2.995941e-04	k: 704	n:2530000
SORBS1   2530000 perm   2787 sec   (908 perm/sec)   p_kst 2.782609e-04   p_cons 6.055980e-01   p_joint 2.782609e-04

Joint ci ratio: 1.473021e-01	ci left: 2.582069e-04	ci right 2.996393e-04	k: 707	n:2540000
Cons ci ratio: 1.984883e-03	ci left: 6.050093e-01	ci right 6.062117e-01	k: 1538251	n:2540000
KS ci ratio: 1.473021e-01	ci left: 2.582069e-04	ci right 2.996393e-04	k: 707	n:2540000
SORBS1   2540000 perm   2807 sec   (905 perm/sec)   p_kst 2.783465e-04   p_cons 6.056106e-01   p_joint 2.783465e-04

Joint ci ratio: 1.467846e-01	ci left: 2.590830e-04	ci right 3.004971e-04	k: 712	n:2550000
Cons ci ratio: 1.980914e-03	ci left: 6.050281e-01	ci right 6.062281e-01	k: 1544352	n:2550000
KS ci ratio: 1.467846e-01	ci left: 2.590830e-04	ci right 3.004971e-04	k: 712	n:2550000
SORBS1   2550000 perm   2827 sec   (902 perm/sec)   p_kst 2.792157e-04   p_cons 6.056282e-01   p_joint 2.792157e-04

Joint ci ratio: 1.465792e-01	ci left: 2.588235e-04	ci right 3.001332e-04	k: 714	n:2560000
Cons ci ratio: 1.977008e-03	ci left: 6.050374e-01	ci right 6.062351e-01	k: 1550429	n:2560000
KS ci ratio: 1.465792e-01	ci left: 2.588235e-04	ci right 3.001332e-04	k: 714	n:2560000
SORBS1   2560000 perm   2848 sec   (899 perm/sec)   p_kst 2.789063e-04   p_cons 6.056363e-01   p_joint 2.789063e-04

Joint ci ratio: 1.465793e-01	ci left: 2.578164e-04	ci right 2.989653e-04	k: 714	n:2570000
Cons ci ratio: 1.973237e-03	ci left: 6.050193e-01	ci right 6.062147e-01	k: 1556436	n:2570000
KS ci ratio: 1.465793e-01	ci left: 2.578164e-04	ci right 2.989653e-04	k: 714	n:2570000
SORBS1   2570000 perm   2869 sec   (896 perm/sec)   p_kst 2.778210e-04   p_cons 6.056171e-01   p_joint 2.778210e-04

Joint ci ratio: 1.461709e-01	ci left: 2.583108e-04	ci right 2.994137e-04	k: 718	n:2580000
Cons ci ratio: 1.969360e-03	ci left: 6.050324e-01	ci right 6.062255e-01	k: 1562523	n:2580000
KS ci ratio: 1.461709e-01	ci left: 2.583108e-04	ci right 2.994137e-04	k: 718	n:2580000
SORBS1   2580000 perm   2889 sec   (893 perm/sec)   p_kst 2.782946e-04   p_cons 6.056291e-01   p_joint 2.782946e-04

Joint ci ratio: 1.455647e-01	ci left: 2.595455e-04	ci right 3.006587e-04	k: 724	n:2590000
Cons ci ratio: 1.965550e-03	ci left: 6.050346e-01	ci right 6.062254e-01	k: 1568582	n:2590000
KS ci ratio: 1.455647e-01	ci left: 2.595455e-04	ci right 3.006587e-04	k: 724	n:2590000
SORBS1   2590000 perm   2909 sec   (890 perm/sec)   p_kst 2.795367e-04   p_cons 6.056301e-01   p_joint 2.795367e-04

Joint ci ratio: 1.450653e-01	ci left: 2.604004e-04	ci right 3.014953e-04	k: 729	n:2600000
Cons ci ratio: 1.961736e-03	ci left: 6.050433e-01	ci right 6.062318e-01	k: 1574658	n:2600000
KS ci ratio: 1.450653e-01	ci left: 2.604004e-04	ci right 3.014953e-04	k: 729	n:2600000
SORBS1   2600000 perm   2930 sec   (887 perm/sec)   p_kst 2.803846e-04   p_cons 6.056377e-01   p_joint 2.803846e-04

Joint ci ratio: 1.448670e-01	ci left: 2.601412e-04	ci right 3.011342e-04	k: 731	n:2610000
Cons ci ratio: 1.958044e-03	ci left: 6.050275e-01	ci right 6.062137e-01	k: 1580670	n:2610000
KS ci ratio: 1.448670e-01	ci left: 2.601412e-04	ci right 3.011342e-04	k: 731	n:2610000
SORBS1   2610000 perm   2951 sec   (885 perm/sec)   p_kst 2.800766e-04   p_cons 6.056207e-01   p_joint 2.800766e-04

Joint ci ratio: 1.441792e-01	ci left: 2.617234e-04	ci right 3.027531e-04	k: 738	n:2620000
Cons ci ratio: 1.954205e-03	ci left: 6.050526e-01	ci right 6.062365e-01	k: 1586789	n:2620000
KS ci ratio: 1.441792e-01	ci left: 2.617234e-04	ci right 3.027531e-04	k: 738	n:2620000
SORBS1   2620000 perm   2971 sec   (882 perm/sec)   p_kst 2.816794e-04   p_cons 6.056447e-01   p_joint 2.816794e-04

Joint ci ratio: 1.438874e-01	ci left: 2.618279e-04	ci right 3.027837e-04	k: 741	n:2630000
Cons ci ratio: 1.950543e-03	ci left: 6.050398e-01	ci right 6.062215e-01	k: 1592809	n:2630000
KS ci ratio: 1.438874e-01	ci left: 2.618279e-04	ci right 3.027837e-04	k: 741	n:2630000
SORBS1   2630000 perm   2992 sec   (879 perm/sec)   p_kst 2.817490e-04   p_cons 6.056308e-01   p_joint 2.817490e-04

Joint ci ratio: 1.437906e-01	ci left: 2.612013e-04	ci right 3.020292e-04	k: 742	n:2640000
Cons ci ratio: 1.946880e-03	ci left: 6.050325e-01	ci right 6.062119e-01	k: 1598843	n:2640000
KS ci ratio: 1.437906e-01	ci left: 2.612013e-04	ci right 3.020292e-04	k: 742	n:2640000
SORBS1   2640000 perm   3013 sec   (876 perm/sec)   p_kst 2.810606e-04   p_cons 6.056223e-01   p_joint 2.810606e-04

Joint ci ratio: 1.437907e-01	ci left: 2.602156e-04	ci right 3.008895e-04	k: 742	n:2650000
Cons ci ratio: 1.943283e-03	ci left: 6.050139e-01	ci right 6.061911e-01	k: 1604847	n:2650000
KS ci ratio: 1.437907e-01	ci left: 2.602156e-04	ci right 3.008895e-04	k: 742	n:2650000
SORBS1   2650000 perm   3034 sec   (874 perm/sec)   p_kst 2.800000e-04   p_cons 6.056026e-01   p_joint 2.800000e-04

Joint ci ratio: 1.435975e-01	ci left: 2.599622e-04	ci right 3.005372e-04	k: 744	n:2660000
Cons ci ratio: 1.939619e-03	ci left: 6.050169e-01	ci right 6.061919e-01	k: 1610908	n:2660000
KS ci ratio: 1.435975e-01	ci left: 2.599622e-04	ci right 3.005372e-04	k: 744	n:2660000
SORBS1   2660000 perm   3055 sec   (871 perm/sec)   p_kst 2.796992e-04   p_cons 6.056045e-01   p_joint 2.796992e-04

Joint ci ratio: 1.433093e-01	ci left: 2.600718e-04	ci right 3.005755e-04	k: 747	n:2670000
Cons ci ratio: 1.936096e-03	ci left: 6.049903e-01	ci right 6.061631e-01	k: 1616890	n:2670000
KS ci ratio: 1.433093e-01	ci left: 2.600718e-04	ci right 3.005755e-04	k: 747	n:2670000
SORBS1   2670000 perm   3076 sec   (868 perm/sec)   p_kst 2.797753e-04   p_cons 6.055768e-01   p_joint 2.797753e-04

Joint ci ratio: 1.431181e-01	ci left: 2.598209e-04	ci right 3.002270e-04	k: 749	n:2680000
Cons ci ratio: 1.932497e-03	ci left: 6.049873e-01	ci right 6.061580e-01	k: 1622935	n:2680000
KS ci ratio: 1.431181e-01	ci left: 2.598209e-04	ci right 3.002270e-04	k: 749	n:2680000
SORBS1   2680000 perm   3097 sec   (865 perm/sec)   p_kst 2.794776e-04   p_cons 6.055728e-01   p_joint 2.794776e-04

Joint ci ratio: 1.427379e-01	ci left: 2.602888e-04	ci right 3.006510e-04	k: 753	n:2690000
Cons ci ratio: 1.928894e-03	ci left: 6.049904e-01	ci right 6.061588e-01	k: 1628996	n:2690000
KS ci ratio: 1.427379e-01	ci left: 2.602888e-04	ci right 3.006510e-04	k: 753	n:2690000
SORBS1   2690000 perm   3118 sec   (863 perm/sec)   p_kst 2.799257e-04   p_cons 6.055747e-01   p_joint 2.799257e-04

Joint ci ratio: 1.425490e-01	ci left: 2.600391e-04	ci right 3.003046e-04	k: 755	n:2700000
Cons ci ratio: 1.925443e-03	ci left: 6.049604e-01	ci right 6.061267e-01	k: 1634968	n:2700000
KS ci ratio: 1.425490e-01	ci left: 2.600391e-04	ci right 3.003046e-04	k: 755	n:2700000
SORBS1   2700000 perm   3139 sec   (860 perm/sec)   p_kst 2.796296e-04   p_cons 6.055437e-01   p_joint 2.796296e-04

Joint ci ratio: 1.421734e-01	ci left: 2.605030e-04	ci right 3.007251e-04	k: 759	n:2710000
Cons ci ratio: 1.921878e-03	ci left: 6.049639e-01	ci right 6.061281e-01	k: 1641030	n:2710000
KS ci ratio: 1.421734e-01	ci left: 2.605030e-04	ci right 3.007251e-04	k: 759	n:2710000
SORBS1   2710000 perm   3161 sec   (857 perm/sec)   p_kst 2.800738e-04   p_cons 6.055461e-01   p_joint 2.800738e-04

Joint ci ratio: 1.419867e-01	ci left: 2.602544e-04	ci right 3.003809e-04	k: 761	n:2720000
Cons ci ratio: 1.918392e-03	ci left: 6.049523e-01	ci right 6.061143e-01	k: 1647051	n:2720000
KS ci ratio: 1.419867e-01	ci left: 2.602544e-04	ci right 3.003809e-04	k: 761	n:2720000
SORBS1   2720000 perm   3182 sec   (855 perm/sec)   p_kst 2.797794e-04   p_cons 6.055335e-01   p_joint 2.797794e-04

Joint ci ratio: 1.418008e-01	ci left: 2.600077e-04	ci right 3.000392e-04	k: 763	n:2730000
Cons ci ratio: 1.914985e-03	ci left: 6.049262e-01	ci right 6.060861e-01	k: 1653032	n:2730000
KS ci ratio: 1.418008e-01	ci left: 2.600077e-04	ci right 3.000392e-04	k: 763	n:2730000
SORBS1   2730000 perm   3203 sec   (852 perm/sec)   p_kst 2.794872e-04   p_cons 6.055062e-01   p_joint 2.794872e-04

Joint ci ratio: 1.414310e-01	ci left: 2.604669e-04	ci right 3.004557e-04	k: 767	n:2740000
Cons ci ratio: 1.911394e-03	ci left: 6.049506e-01	ci right 6.061083e-01	k: 1659151	n:2740000
KS ci ratio: 1.414310e-01	ci left: 2.604669e-04	ci right 3.004557e-04	k: 767	n:2740000
SORBS1   2740000 perm   3225 sec   (850 perm/sec)   p_kst 2.799270e-04   p_cons 6.055296e-01   p_joint 2.799270e-04

Joint ci ratio: 1.410641e-01	ci left: 2.609229e-04	ci right 3.008690e-04	k: 771	n:2750000
Cons ci ratio: 1.907935e-03	ci left: 6.049468e-01	ci right 6.061024e-01	k: 1665193	n:2750000
KS ci ratio: 1.410641e-01	ci left: 2.609229e-04	ci right 3.008690e-04	k: 771	n:2750000
SORBS1   2750000 perm   3247 sec   (847 perm/sec)   p_kst 2.803636e-04   p_cons 6.055247e-01   p_joint 2.803636e-04

Joint ci ratio: 1.408817e-01	ci left: 2.606766e-04	ci right 3.005291e-04	k: 773	n:2760000
Cons ci ratio: 1.904522e-03	ci left: 6.049362e-01	ci right 6.060897e-01	k: 1671216	n:2760000
KS ci ratio: 1.408817e-01	ci left: 2.606766e-04	ci right 3.005291e-04	k: 773	n:2760000
SORBS1   2760000 perm   3268 sec   (844 perm/sec)   p_kst 2.800725e-04   p_cons 6.055130e-01   p_joint 2.800725e-04

Joint ci ratio: 1.407001e-01	ci left: 2.604321e-04	ci right 3.001916e-04	k: 775	n:2770000
Cons ci ratio: 1.901150e-03	ci left: 6.049198e-01	ci right 6.060713e-01	k: 1677223	n:2770000
KS ci ratio: 1.407001e-01	ci left: 2.604321e-04	ci right 3.001916e-04	k: 775	n:2770000
SORBS1   2770000 perm   3291 sec   (842 perm/sec)   p_kst 2.797834e-04   p_cons 6.054957e-01   p_joint 2.797834e-04

Joint ci ratio: 1.404289e-01	ci left: 2.605365e-04	ci right 3.002288e-04	k: 778	n:2780000
Cons ci ratio: 1.897752e-03	ci left: 6.049148e-01	ci right 6.060642e-01	k: 1683261	n:2780000
KS ci ratio: 1.404289e-01	ci left: 2.605365e-04	ci right 3.002288e-04	k: 778	n:2780000
SORBS1   2780000 perm   3313 sec   (839 perm/sec)   p_kst 2.798561e-04   p_cons 6.054896e-01   p_joint 2.798561e-04

Joint ci ratio: 1.403389e-01	ci left: 2.599485e-04	ci right 2.995237e-04	k: 779	n:2790000
Cons ci ratio: 1.894373e-03	ci left: 6.049094e-01	ci right 6.060567e-01	k: 1689298	n:2790000
KS ci ratio: 1.403389e-01	ci left: 2.599485e-04	ci right 2.995237e-04	k: 779	n:2790000
SORBS1   2790000 perm   3335 sec   (837 perm/sec)   p_kst 2.792115e-04   p_cons 6.054832e-01   p_joint 2.792115e-04

Joint ci ratio: 1.402490e-01	ci left: 2.593647e-04	ci right 2.988237e-04	k: 780	n:2800000
Cons ci ratio: 1.891120e-03	ci left: 6.048769e-01	ci right 6.060222e-01	k: 1695259	n:2800000
KS ci ratio: 1.402490e-01	ci left: 2.593647e-04	ci right 2.988237e-04	k: 780	n:2800000
SORBS1   2800000 perm   3357 sec   (834 perm/sec)   p_kst 2.785714e-04   p_cons 6.054496e-01   p_joint 2.785714e-04

Joint ci ratio: 1.402491e-01	ci left: 2.584417e-04	ci right 2.977603e-04	k: 780	n:2810000
Cons ci ratio: 1.887820e-03	ci left: 6.048606e-01	ci right 6.060039e-01	k: 1701265	n:2810000
KS ci ratio: 1.402491e-01	ci left: 2.584417e-04	ci right 2.977603e-04	k: 780	n:2810000
SORBS1   2810000 perm   3379 sec   (832 perm/sec)   p_kst 2.775801e-04   p_cons 6.054324e-01   p_joint 2.775801e-04

Joint ci ratio: 1.401595e-01	ci left: 2.578674e-04	ci right 2.970714e-04	k: 781	n:2820000
Cons ci ratio: 1.884375e-03	ci left: 6.048857e-01	ci right 6.060269e-01	k: 1707387	n:2820000
KS ci ratio: 1.401595e-01	ci left: 2.578674e-04	ci right 2.970714e-04	k: 781	n:2820000
SORBS1   2820000 perm   3401 sec   (829 perm/sec)   p_kst 2.769504e-04   p_cons 6.054564e-01   p_joint 2.769504e-04

Joint ci ratio: 1.398023e-01	ci left: 2.583202e-04	ci right 2.974846e-04	k: 785	n:2830000
Cons ci ratio: 1.880954e-03	ci left: 6.049094e-01	ci right 6.060486e-01	k: 1713506	n:2830000
KS ci ratio: 1.398023e-01	ci left: 2.583202e-04	ci right 2.974846e-04	k: 785	n:2830000
SORBS1   2830000 perm   3423 sec   (827 perm/sec)   p_kst 2.773852e-04   p_cons 6.054792e-01   p_joint 2.773852e-04

Joint ci ratio: 1.396248e-01	ci left: 2.580902e-04	ci right 2.971659e-04	k: 787	n:2840000
Cons ci ratio: 1.877687e-03	ci left: 6.048982e-01	ci right 6.060354e-01	k: 1719526	n:2840000
KS ci ratio: 1.396248e-01	ci left: 2.580902e-04	ci right 2.971659e-04	k: 787	n:2840000
SORBS1   2840000 perm   3446 sec   (824 perm/sec)   p_kst 2.771127e-04   p_cons 6.054669e-01   p_joint 2.771127e-04

Joint ci ratio: 1.394480e-01	ci left: 2.578619e-04	ci right 2.968495e-04	k: 789	n:2850000
Cons ci ratio: 1.874353e-03	ci left: 6.049088e-01	ci right 6.060440e-01	k: 1725608	n:2850000
KS ci ratio: 1.394480e-01	ci left: 2.578619e-04	ci right 2.968495e-04	k: 789	n:2850000
SORBS1   2850000 perm   3468 sec   (822 perm/sec)   p_kst 2.768421e-04   p_cons 6.054765e-01   p_joint 2.768421e-04

Joint ci ratio: 1.392718e-01	ci left: 2.576352e-04	ci right 2.965352e-04	k: 791	n:2860000
Cons ci ratio: 1.871107e-03	ci left: 6.049011e-01	ci right 6.060343e-01	k: 1731638	n:2860000
KS ci ratio: 1.392718e-01	ci left: 2.576352e-04	ci right 2.965352e-04	k: 791	n:2860000
SORBS1   2860000 perm   3491 sec   (819 perm/sec)   p_kst 2.765734e-04   p_cons 6.054678e-01   p_joint 2.765734e-04

Joint ci ratio: 1.390963e-01	ci left: 2.574101e-04	ci right 2.962231e-04	k: 793	n:2870000
Cons ci ratio: 1.867909e-03	ci left: 6.048855e-01	ci right 6.060167e-01	k: 1737645	n:2870000
KS ci ratio: 1.390963e-01	ci left: 2.574101e-04	ci right 2.962231e-04	k: 793	n:2870000
SORBS1   2870000 perm   3513 sec   (817 perm/sec)   p_kst 2.763066e-04   p_cons 6.054512e-01   p_joint 2.763066e-04

Joint ci ratio: 1.388343e-01	ci left: 2.575218e-04	ci right 2.962724e-04	k: 796	n:2880000
Cons ci ratio: 1.864627e-03	ci left: 6.048957e-01	ci right 6.060250e-01	k: 1743726	n:2880000
KS ci ratio: 1.388343e-01	ci left: 2.575218e-04	ci right 2.962724e-04	k: 796	n:2880000
SORBS1   2880000 perm   3536 sec   (815 perm/sec)   p_kst 2.763889e-04   p_cons 6.054604e-01   p_joint 2.763889e-04

Joint ci ratio: 1.384008e-01	ci left: 2.583008e-04	ci right 2.970373e-04	k: 801	n:2890000
Cons ci ratio: 1.861366e-03	ci left: 6.049051e-01	ci right 6.060324e-01	k: 1749805	n:2890000
KS ci ratio: 1.384008e-01	ci left: 2.583008e-04	ci right 2.970373e-04	k: 801	n:2890000
SORBS1   2890000 perm   3559 sec   (812 perm/sec)   p_kst 2.771626e-04   p_cons 6.054689e-01   p_joint 2.771626e-04

Joint ci ratio: 1.380569e-01	ci left: 2.587417e-04	ci right 2.974400e-04	k: 805	n:2900000
Cons ci ratio: 1.858127e-03	ci left: 6.049131e-01	ci right 6.060384e-01	k: 1755880	n:2900000
KS ci ratio: 1.380569e-01	ci left: 2.587417e-04	ci right 2.974400e-04	k: 805	n:2900000
SORBS1   2900000 perm   3582 sec   (810 perm/sec)   p_kst 2.775862e-04   p_cons 6.054759e-01   p_joint 2.775862e-04

Joint ci ratio: 1.378007e-01	ci left: 2.588479e-04	ci right 2.974844e-04	k: 808	n:2910000
Cons ci ratio: 1.854924e-03	ci left: 6.049158e-01	ci right 6.060393e-01	k: 1761940	n:2910000
KS ci ratio: 1.378007e-01	ci left: 2.588479e-04	ci right 2.974844e-04	k: 808	n:2910000
SORBS1   2910000 perm   3605 sec   (807 perm/sec)   p_kst 2.776632e-04   p_cons 6.054777e-01   p_joint 2.776632e-04

Joint ci ratio: 1.372924e-01	ci left: 2.599455e-04	ci right 2.985910e-04	k: 814	n:2920000
Cons ci ratio: 1.851671e-03	ci left: 6.049361e-01	ci right 6.060576e-01	k: 1768051	n:2920000
KS ci ratio: 1.372924e-01	ci left: 2.599455e-04	ci right 2.985910e-04	k: 814	n:2920000
SORBS1   2920000 perm   3627 sec   (805 perm/sec)   p_kst 2.787671e-04   p_cons 6.054969e-01   p_joint 2.787671e-04

Joint ci ratio: 1.368732e-01	ci left: 2.607063e-04	ci right 2.993369e-04	k: 819	n:2930000
Cons ci ratio: 1.848468e-03	ci left: 6.049473e-01	ci right 6.060669e-01	k: 1774136	n:2930000
KS ci ratio: 1.368732e-01	ci left: 2.607063e-04	ci right 2.993369e-04	k: 819	n:2930000
SORBS1   2930000 perm   3651 sec   (803 perm/sec)   p_kst 2.795222e-04   p_cons 6.055072e-01   p_joint 2.795222e-04

Joint ci ratio: 1.364577e-01	ci left: 2.614621e-04	ci right 3.000776e-04	k: 824	n:2940000
Cons ci ratio: 1.845217e-03	ci left: 6.049754e-01	ci right 6.060931e-01	k: 1780271	n:2940000
KS ci ratio: 1.364577e-01	ci left: 2.614621e-04	ci right 3.000776e-04	k: 824	n:2940000
SORBS1   2940000 perm   3674 sec   (800 perm/sec)   p_kst 2.802721e-04   p_cons 6.055344e-01   p_joint 2.802721e-04

Joint ci ratio: 1.362103e-01	ci left: 2.615581e-04	ci right 3.001120e-04	k: 827	n:2950000
Cons ci ratio: 1.842061e-03	ci left: 6.049830e-01	ci right 6.060988e-01	k: 1786346	n:2950000
KS ci ratio: 1.362103e-01	ci left: 2.615581e-04	ci right 3.001120e-04	k: 827	n:2950000
SORBS1   2950000 perm   3697 sec   (798 perm/sec)   p_kst 2.803390e-04   p_cons 6.055410e-01   p_joint 2.803390e-04

Joint ci ratio: 1.362103e-01	ci left: 2.606744e-04	ci right 2.990981e-04	k: 827	n:2960000
Cons ci ratio: 1.839009e-03	ci left: 6.049680e-01	ci right 6.060818e-01	k: 1792354	n:2960000
KS ci ratio: 1.362103e-01	ci left: 2.606744e-04	ci right 2.990981e-04	k: 827	n:2960000
SORBS1   2960000 perm   3720 sec   (796 perm/sec)   p_kst 2.793919e-04   p_cons 6.055250e-01   p_joint 2.793919e-04

Joint ci ratio: 1.360461e-01	ci left: 2.604472e-04	ci right 2.987873e-04	k: 829	n:2970000
Cons ci ratio: 1.835938e-03	ci left: 6.049617e-01	ci right 6.060737e-01	k: 1798388	n:2970000
KS ci ratio: 1.360461e-01	ci left: 2.604472e-04	ci right 2.987873e-04	k: 829	n:2970000
SORBS1   2970000 perm   3743 sec   (793 perm/sec)   p_kst 2.791246e-04   p_cons 6.055178e-01   p_joint 2.791246e-04

Joint ci ratio: 1.357195e-01	ci left: 2.608699e-04	ci right 2.991726e-04	k: 833	n:2980000
Cons ci ratio: 1.832834e-03	ci left: 6.049680e-01	ci right 6.060781e-01	k: 1804459	n:2980000
KS ci ratio: 1.357195e-01	ci left: 2.608699e-04	ci right 2.991726e-04	k: 833	n:2980000
SORBS1   2980000 perm   3767 sec   (791 perm/sec)   p_kst 2.795302e-04   p_cons 6.055232e-01   p_joint 2.795302e-04

Joint ci ratio: 1.355571e-01	ci left: 2.606436e-04	ci right 2.988636e-04	k: 835	n:2990000
Cons ci ratio: 1.829754e-03	ci left: 6.049722e-01	ci right 6.060805e-01	k: 1810524	n:2990000
KS ci ratio: 1.355571e-01	ci left: 2.606436e-04	ci right 2.988636e-04	k: 835	n:2990000
SORBS1   2990000 perm   3790 sec   (789 perm/sec)   p_kst 2.792642e-04   p_cons 6.055264e-01   p_joint 2.792642e-04

Joint ci ratio: 1.353952e-01	ci left: 2.604188e-04	ci right 2.985566e-04	k: 837	n:3000000
Cons ci ratio: 1.826695e-03	ci left: 6.049750e-01	ci right 6.060814e-01	k: 1816585	n:3000000
KS ci ratio: 1.353952e-01	ci left: 2.604188e-04	ci right 2.985566e-04	k: 837	n:3000000
SORBS1   3000000 perm   3813 sec   (787 perm/sec)   p_kst 2.790000e-04   p_cons 6.055283e-01   p_joint 2.790000e-04

Joint ci ratio: 1.353953e-01	ci left: 2.595537e-04	ci right 2.975647e-04	k: 837	n:3010000
Cons ci ratio: 1.823682e-03	ci left: 6.049695e-01	ci right 6.060741e-01	k: 1822621	n:3010000
KS ci ratio: 1.353953e-01	ci left: 2.595537e-04	ci right 2.975647e-04	k: 837	n:3010000
SORBS1   3010000 perm   3837 sec   (784 perm/sec)   p_kst 2.780731e-04   p_cons 6.055219e-01   p_joint 2.780731e-04

Joint ci ratio: 1.353953e-01	ci left: 2.586942e-04	ci right 2.965794e-04	k: 837	n:3020000
Cons ci ratio: 1.820622e-03	ci left: 6.049806e-01	ci right 6.060834e-01	k: 1828707	n:3020000
KS ci ratio: 1.353953e-01	ci left: 2.586942e-04	ci right 2.965794e-04	k: 837	n:3020000
SORBS1   3020000 perm   3861 sec   (782 perm/sec)   p_kst 2.771523e-04   p_cons 6.055321e-01   p_joint 2.771523e-04

Joint ci ratio: 1.352341e-01	ci left: 2.584781e-04	ci right 2.962830e-04	k: 839	n:3030000
Cons ci ratio: 1.817634e-03	ci left: 6.049765e-01	ci right 6.060774e-01	k: 1834747	n:3030000
KS ci ratio: 1.352341e-01	ci left: 2.584781e-04	ci right 2.962830e-04	k: 839	n:3030000
SORBS1   3030000 perm   3884 sec   (780 perm/sec)   p_kst 2.768977e-04   p_cons 6.055271e-01   p_joint 2.768977e-04

Joint ci ratio: 1.348333e-01	ci left: 2.592171e-04	ci right 2.970087e-04	k: 844	n:3040000
Cons ci ratio: 1.814581e-03	ci left: 6.049934e-01	ci right 6.060925e-01	k: 1840851	n:3040000
KS ci ratio: 1.348333e-01	ci left: 2.592171e-04	ci right 2.970087e-04	k: 844	n:3040000
SORBS1   3040000 perm   3908 sec   (778 perm/sec)   p_kst 2.776316e-04   p_cons 6.055431e-01   p_joint 2.776316e-04

Joint ci ratio: 1.347537e-01	ci left: 2.586840e-04	ci right 2.963738e-04	k: 845	n:3050000
Cons ci ratio: 1.811507e-03	ci left: 6.050198e-01	ci right 6.061171e-01	k: 1846984	n:3050000
KS ci ratio: 1.347537e-01	ci left: 2.586840e-04	ci right 2.963738e-04	k: 845	n:3050000
SORBS1   3050000 perm   3932 sec   (776 perm/sec)   p_kst 2.770492e-04   p_cons 6.055685e-01   p_joint 2.770492e-04

Joint ci ratio: 1.341995e-01	ci left: 2.600492e-04	ci right 2.977697e-04	k: 852	n:3060000
Cons ci ratio: 1.808406e-03	ci left: 6.050574e-01	ci right 6.061529e-01	k: 1853152	n:3060000
KS ci ratio: 1.341995e-01	ci left: 2.600492e-04	ci right 2.977697e-04	k: 852	n:3060000
SORBS1   3060000 perm   3956 sec   (774 perm/sec)   p_kst 2.784314e-04   p_cons 6.056052e-01   p_joint 2.784314e-04

Joint ci ratio: 1.338079e-01	ci left: 2.607762e-04	ci right 2.984830e-04	k: 857	n:3070000
Cons ci ratio: 1.805550e-03	ci left: 6.050342e-01	ci right 6.061279e-01	k: 1859134	n:3070000
KS ci ratio: 1.338079e-01	ci left: 2.607762e-04	ci right 2.984830e-04	k: 857	n:3070000
SORBS1   3070000 perm   3980 sec   (771 perm/sec)   p_kst 2.791531e-04   p_cons 6.055811e-01   p_joint 2.791531e-04

Joint ci ratio: 1.335745e-01	ci left: 2.608710e-04	ci right 2.985205e-04	k: 860	n:3080000
Cons ci ratio: 1.802524e-03	ci left: 6.050595e-01	ci right 6.061514e-01	k: 1865265	n:3080000
KS ci ratio: 1.335745e-01	ci left: 2.608710e-04	ci right 2.985205e-04	k: 860	n:3080000
SORBS1   3080000 perm   4004 sec   (769 perm/sec)   p_kst 2.792208e-04   p_cons 6.056055e-01   p_joint 2.792208e-04

Joint ci ratio: 1.333424e-01	ci left: 2.609652e-04	ci right 2.985577e-04	k: 863	n:3090000
Cons ci ratio: 1.799705e-03	ci left: 6.050338e-01	ci right 6.061239e-01	k: 1871239	n:3090000
KS ci ratio: 1.333424e-01	ci left: 2.609652e-04	ci right 2.985577e-04	k: 863	n:3090000
SORBS1   3090000 perm   4028 sec   (767 perm/sec)   p_kst 2.792880e-04   p_cons 6.055790e-01   p_joint 2.792880e-04

Joint ci ratio: 1.331884e-01	ci left: 2.607471e-04	ci right 2.982613e-04	k: 865	n:3100000
Cons ci ratio: 1.796849e-03	ci left: 6.050215e-01	ci right 6.061099e-01	k: 1877254	n:3100000
KS ci ratio: 1.331884e-01	ci left: 2.607471e-04	ci right 2.982613e-04	k: 865	n:3100000
SORBS1   3100000 perm   4052 sec   (765 perm/sec)   p_kst 2.790323e-04   p_cons 6.055658e-01   p_joint 2.790323e-04

Joint ci ratio: 1.328818e-01	ci left: 2.611520e-04	ci right 2.986312e-04	k: 869	n:3110000
Cons ci ratio: 1.793911e-03	ci left: 6.050350e-01	ci right 6.061217e-01	k: 1883349	n:3110000
KS ci ratio: 1.328818e-01	ci left: 2.611520e-04	ci right 2.986312e-04	k: 869	n:3110000
SORBS1   3110000 perm   4077 sec   (763 perm/sec)   p_kst 2.794212e-04   p_cons 6.055785e-01   p_joint 2.794212e-04

Joint ci ratio: 1.326533e-01	ci left: 2.612446e-04	ci right 2.986675e-04	k: 872	n:3120000
Cons ci ratio: 1.791077e-03	ci left: 6.050244e-01	ci right 6.061093e-01	k: 1889369	n:3120000
KS ci ratio: 1.326533e-01	ci left: 2.612446e-04	ci right 2.986675e-04	k: 872	n:3120000
SORBS1   3120000 perm   4101 sec   (761 perm/sec)   p_kst 2.794872e-04   p_cons 6.055670e-01   p_joint 2.794872e-04

Joint ci ratio: 1.321997e-01	ci left: 2.622634e-04	ci right 2.996937e-04	k: 878	n:3130000
Cons ci ratio: 1.788186e-03	ci left: 6.050324e-01	ci right 6.061156e-01	k: 1895447	n:3130000
KS ci ratio: 1.321997e-01	ci left: 2.622634e-04	ci right 2.996937e-04	k: 878	n:3130000
SORBS1   3130000 perm   4126 sec   (759 perm/sec)   p_kst 2.805112e-04   p_cons 6.055741e-01   p_joint 2.805112e-04

Joint ci ratio: 1.317508e-01	ci left: 2.632759e-04	ci right 3.007131e-04	k: 884	n:3140000
Cons ci ratio: 1.785373e-03	ci left: 6.050235e-01	ci right 6.061050e-01	k: 1901472	n:3140000
KS ci ratio: 1.317508e-01	ci left: 2.632759e-04	ci right 3.007131e-04	k: 884	n:3140000
SORBS1   3140000 perm   4151 sec   (756 perm/sec)   p_kst 2.815287e-04   p_cons 6.055643e-01   p_joint 2.815287e-04

Joint ci ratio: 1.313801e-01	ci left: 2.639752e-04	ci right 3.013980e-04	k: 889	n:3150000
Cons ci ratio: 1.782526e-03	ci left: 6.050273e-01	ci right 6.061071e-01	k: 1907537	n:3150000
KS ci ratio: 1.313801e-01	ci left: 2.639752e-04	ci right 3.013980e-04	k: 889	n:3150000
SORBS1   3150000 perm   4176 sec   (754 perm/sec)   p_kst 2.822222e-04   p_cons 6.055673e-01   p_joint 2.822222e-04

Joint ci ratio: 1.308664e-01	ci left: 2.652824e-04	ci right 3.027320e-04	k: 896	n:3160000
Cons ci ratio: 1.779646e-03	ci left: 6.050435e-01	ci right 6.061215e-01	k: 1913641	n:3160000
KS ci ratio: 1.308664e-01	ci left: 2.652824e-04	ci right 3.027320e-04	k: 896	n:3160000
SORBS1   3160000 perm   4200 sec   (752 perm/sec)   p_kst 2.835443e-04   p_cons 6.055826e-01   p_joint 2.835443e-04

Joint ci ratio: 1.306481e-01	ci left: 2.653609e-04	ci right 3.027543e-04	k: 899	n:3170000
Cons ci ratio: 1.776897e-03	ci left: 6.050283e-01	ci right 6.061046e-01	k: 1919646	n:3170000
KS ci ratio: 1.306481e-01	ci left: 2.653609e-04	ci right 3.027543e-04	k: 899	n:3170000
SORBS1   3170000 perm   4225 sec   (750 perm/sec)   p_kst 2.835962e-04   p_cons 6.055666e-01   p_joint 2.835962e-04

Joint ci ratio: 1.305756e-01	ci left: 2.648306e-04	ci right 3.021270e-04	k: 900	n:3180000
Cons ci ratio: 1.774131e-03	ci left: 6.050211e-01	ci right 6.060957e-01	k: 1925676	n:3180000
KS ci ratio: 1.305756e-01	ci left: 2.648306e-04	ci right 3.021270e-04	k: 900	n:3180000
SORBS1   3180000 perm   4249 sec   (748 perm/sec)   p_kst 2.830189e-04   p_cons 6.055585e-01   p_joint 2.830189e-04

Joint ci ratio: 1.304309e-01	ci left: 2.646069e-04	ci right 3.018273e-04	k: 902	n:3190000
Cons ci ratio: 1.771454e-03	ci left: 6.049932e-01	ci right 6.060662e-01	k: 1931640	n:3190000
KS ci ratio: 1.304309e-01	ci left: 2.646069e-04	ci right 3.018273e-04	k: 902	n:3190000
SORBS1   3190000 perm   4275 sec   (746 perm/sec)   p_kst 2.827586e-04   p_cons 6.055298e-01   p_joint 2.827586e-04

Joint ci ratio: 1.302868e-01	ci left: 2.643847e-04	ci right 3.015294e-04	k: 904	n:3200000
Cons ci ratio: 1.768659e-03	ci left: 6.050008e-01	ci right 6.060721e-01	k: 1937717	n:3200000
KS ci ratio: 1.302868e-01	ci left: 2.643847e-04	ci right 3.015294e-04	k: 904	n:3200000
SORBS1   3200000 perm   4299 sec   (744 perm/sec)   p_kst 2.825000e-04   p_cons 6.055366e-01   p_joint 2.825000e-04

Joint ci ratio: 1.301431e-01	ci left: 2.641638e-04	ci right 3.012334e-04	k: 906	n:3210000
Cons ci ratio: 1.765868e-03	ci left: 6.050109e-01	ci right 6.060805e-01	k: 1943802	n:3210000
KS ci ratio: 1.301431e-01	ci left: 2.641638e-04	ci right 3.012334e-04	k: 906	n:3210000
SORBS1   3210000 perm   4324 sec   (742 perm/sec)   p_kst 2.822430e-04   p_cons 6.055458e-01   p_joint 2.822430e-04

Joint ci ratio: 1.299284e-01	ci left: 2.642448e-04	ci right 3.012599e-04	k: 909	n:3220000
Cons ci ratio: 1.763055e-03	ci left: 6.050302e-01	ci right 6.060982e-01	k: 1949917	n:3220000
KS ci ratio: 1.299284e-01	ci left: 2.642448e-04	ci right 3.012599e-04	k: 909	n:3220000
SORBS1   3220000 perm   4349 sec   (740 perm/sec)   p_kst 2.822981e-04   p_cons 6.055643e-01   p_joint 2.822981e-04

Joint ci ratio: 1.297858e-01	ci left: 2.640257e-04	ci right 3.009665e-04	k: 911	n:3230000
Cons ci ratio: 1.760299e-03	ci left: 6.050380e-01	ci right 6.061043e-01	k: 1955995	n:3230000
KS ci ratio: 1.297858e-01	ci left: 2.640257e-04	ci right 3.009665e-04	k: 911	n:3230000
SORBS1   3230000 perm   4374 sec   (738 perm/sec)   p_kst 2.820433e-04   p_cons 6.055712e-01   p_joint 2.820433e-04

Joint ci ratio: 1.296438e-01	ci left: 2.638081e-04	ci right 3.006749e-04	k: 913	n:3240000
Cons ci ratio: 1.757520e-03	ci left: 6.050552e-01	ci right 6.061199e-01	k: 1962104	n:3240000
KS ci ratio: 1.296438e-01	ci left: 2.638081e-04	ci right 3.006749e-04	k: 913	n:3240000
SORBS1   3240000 perm   4400 sec   (736 perm/sec)   p_kst 2.817901e-04   p_cons 6.055877e-01   p_joint 2.817901e-04

Joint ci ratio: 1.292906e-01	ci left: 2.644850e-04	ci right 3.013380e-04	k: 918	n:3250000
Cons ci ratio: 1.754846e-03	ci left: 6.050472e-01	ci right 6.061102e-01	k: 1968131	n:3250000
KS ci ratio: 1.292906e-01	ci left: 2.644850e-04	ci right 3.013380e-04	k: 918	n:3250000
SORBS1   3250000 perm   4425 sec   (734 perm/sec)   p_kst 2.824615e-04   p_cons 6.055788e-01   p_joint 2.824615e-04

Joint ci ratio: 1.289402e-01	ci left: 2.651579e-04	ci right 3.019969e-04	k: 923	n:3260000
Cons ci ratio: 1.752123e-03	ci left: 6.050560e-01	ci right 6.061174e-01	k: 1974213	n:3260000
KS ci ratio: 1.289402e-01	ci left: 2.651579e-04	ci right 3.019969e-04	k: 923	n:3260000
SORBS1   3260000 perm   4451 sec   (732 perm/sec)   p_kst 2.831288e-04   p_cons 6.055868e-01   p_joint 2.831288e-04

Joint ci ratio: 1.288009e-01	ci left: 2.649390e-04	ci right 3.017047e-04	k: 925	n:3270000
Cons ci ratio: 1.749519e-03	ci left: 6.050358e-01	ci right 6.060955e-01	k: 1980200	n:3270000
KS ci ratio: 1.288009e-01	ci left: 2.649390e-04	ci right 3.017047e-04	k: 925	n:3270000
SORBS1   3270000 perm   4476 sec   (731 perm/sec)   p_kst 2.828746e-04   p_cons 6.055657e-01   p_joint 2.828746e-04

Joint ci ratio: 1.286621e-01	ci left: 2.647213e-04	ci right 3.014142e-04	k: 927	n:3280000
Cons ci ratio: 1.746838e-03	ci left: 6.050401e-01	ci right 6.060982e-01	k: 1986267	n:3280000
KS ci ratio: 1.286621e-01	ci left: 2.647213e-04	ci right 3.014142e-04	k: 927	n:3280000
SORBS1   3280000 perm   4501 sec   (729 perm/sec)   p_kst 2.826220e-04   p_cons 6.055692e-01   p_joint 2.826220e-04

Joint ci ratio: 1.284546e-01	ci left: 2.647992e-04	ci right 3.014393e-04	k: 930	n:3290000
Cons ci ratio: 1.744204e-03	ci left: 6.050346e-01	ci right 6.060911e-01	k: 1992302	n:3290000
KS ci ratio: 1.284546e-01	ci left: 2.647992e-04	ci right 3.014393e-04	k: 930	n:3290000
SORBS1   3290000 perm   4527 sec   (727 perm/sec)   p_kst 2.826748e-04   p_cons 6.055629e-01   p_joint 2.826748e-04

Joint ci ratio: 1.283169e-01	ci left: 2.645834e-04	ci right 3.011513e-04	k: 932	n:3300000
Cons ci ratio: 1.741590e-03	ci left: 6.050270e-01	ci right 6.060819e-01	k: 1998330	n:3300000
KS ci ratio: 1.283169e-01	ci left: 2.645834e-04	ci right 3.011513e-04	k: 932	n:3300000
SORBS1   3300000 perm   4553 sec   (725 perm/sec)   p_kst 2.824242e-04   p_cons 6.055545e-01   p_joint 2.824242e-04

Joint ci ratio: 1.278381e-01	ci left: 2.658311e-04	ci right 3.024240e-04	k: 939	n:3310000
Cons ci ratio: 1.738953e-03	ci left: 6.050288e-01	ci right 6.060822e-01	k: 2004389	n:3310000
KS ci ratio: 1.278381e-01	ci left: 2.658311e-04	ci right 3.024240e-04	k: 939	n:3310000
SORBS1   3310000 perm   4578 sec   (723 perm/sec)   p_kst 2.836858e-04   p_cons 6.055556e-01   p_joint 2.836858e-04

Joint ci ratio: 1.272975e-01	ci left: 2.673632e-04	ci right 3.039996e-04	k: 947	n:3320000
Cons ci ratio: 1.736381e-03	ci left: 6.050162e-01	ci right 6.060679e-01	k: 2010400	n:3320000
KS ci ratio: 1.272975e-01	ci left: 2.673632e-04	ci right 3.039996e-04	k: 947	n:3320000
SORBS1   3320000 perm   4604 sec   (721 perm/sec)   p_kst 2.852410e-04   p_cons 6.055422e-01   p_joint 2.852410e-04

Joint ci ratio: 1.269631e-01	ci left: 2.680141e-04	ci right 3.046359e-04	k: 952	n:3330000
Cons ci ratio: 1.733810e-03	ci left: 6.050064e-01	ci right 6.060565e-01	k: 2016420	n:3330000
KS ci ratio: 1.269631e-01	ci left: 2.680141e-04	ci right 3.046359e-04	k: 952	n:3330000
SORBS1   3330000 perm   4630 sec   (719 perm/sec)   p_kst 2.858859e-04   p_cons 6.055315e-01   p_joint 2.858859e-04

Joint ci ratio: 1.266313e-01	ci left: 2.686611e-04	ci right 3.052682e-04	k: 957	n:3340000
Cons ci ratio: 1.731132e-03	ci left: 6.050295e-01	ci right 6.060781e-01	k: 2022550	n:3340000
KS ci ratio: 1.266313e-01	ci left: 2.686611e-04	ci right 3.052682e-04	k: 957	n:3340000
SORBS1   3340000 perm   4656 sec   (717 perm/sec)   p_kst 2.865269e-04   p_cons 6.055539e-01   p_joint 2.865269e-04

Joint ci ratio: 1.263677e-01	ci left: 2.690154e-04	ci right 3.055888e-04	k: 961	n:3350000
Cons ci ratio: 1.728606e-03	ci left: 6.050137e-01	ci right 6.060607e-01	k: 2028550	n:3350000
KS ci ratio: 1.263677e-01	ci left: 2.690154e-04	ci right 3.055888e-04	k: 961	n:3350000
SORBS1   3350000 perm   4682 sec   (716 perm/sec)   p_kst 2.868657e-04   p_cons 6.055373e-01   p_joint 2.868657e-04

Joint ci ratio: 1.261711e-01	ci left: 2.690794e-04	ci right 3.056003e-04	k: 964	n:3360000
Cons ci ratio: 1.726017e-03	ci left: 6.050186e-01	ci right 6.060640e-01	k: 2034619	n:3360000
KS ci ratio: 1.261711e-01	ci left: 2.690794e-04	ci right 3.056003e-04	k: 964	n:3360000
SORBS1   3360000 perm   4708 sec   (714 perm/sec)   p_kst 2.869048e-04   p_cons 6.055414e-01   p_joint 2.869048e-04

Joint ci ratio: 1.261058e-01	ci left: 2.685683e-04	ci right 3.049996e-04	k: 965	n:3370000
Cons ci ratio: 1.723416e-03	ci left: 6.050299e-01	ci right 6.060738e-01	k: 2040710	n:3370000
KS ci ratio: 1.261058e-01	ci left: 2.685683e-04	ci right 3.049996e-04	k: 965	n:3370000
SORBS1   3370000 perm   4734 sec   (712 perm/sec)   p_kst 2.863501e-04   p_cons 6.055519e-01   p_joint 2.863501e-04

Joint ci ratio: 1.260406e-01	ci left: 2.680603e-04	ci right 3.044024e-04	k: 966	n:3380000
Cons ci ratio: 1.720858e-03	ci left: 6.050326e-01	ci right 6.060749e-01	k: 2046772	n:3380000
KS ci ratio: 1.260406e-01	ci left: 2.680603e-04	ci right 3.044024e-04	k: 966	n:3380000
SORBS1   3380000 perm   4761 sec   (710 perm/sec)   p_kst 2.857988e-04   p_cons 6.055538e-01   p_joint 2.857988e-04

Joint ci ratio: 1.259105e-01	ci left: 2.678409e-04	ci right 3.041131e-04	k: 968	n:3390000
Cons ci ratio: 1.718349e-03	ci left: 6.050246e-01	ci right 6.060654e-01	k: 2052798	n:3390000
KS ci ratio: 1.259105e-01	ci left: 2.678409e-04	ci right 3.041131e-04	k: 968	n:3390000
SORBS1   3390000 perm   4788 sec   (708 perm/sec)   p_kst 2.855457e-04   p_cons 6.055451e-01   p_joint 2.855457e-04

Joint ci ratio: 1.259106e-01	ci left: 2.670532e-04	ci right 3.032186e-04	k: 968	n:3400000
Cons ci ratio: 1.715808e-03	ci left: 6.050288e-01	ci right 6.060681e-01	k: 2058865	n:3400000
KS ci ratio: 1.259106e-01	ci left: 2.670532e-04	ci right 3.032186e-04	k: 968	n:3400000
SORBS1   3400000 perm   4814 sec   (706 perm/sec)   p_kst 2.847059e-04   p_cons 6.055485e-01   p_joint 2.847059e-04

Joint ci ratio: 1.257809e-01	ci left: 2.668381e-04	ci right 3.029344e-04	k: 970	n:3410000
Cons ci ratio: 1.713299e-03	ci left: 6.050274e-01	ci right 6.060651e-01	k: 2064913	n:3410000
KS ci ratio: 1.257809e-01	ci left: 2.668381e-04	ci right 3.029344e-04	k: 970	n:3410000
SORBS1   3410000 perm   4840 sec   (704 perm/sec)   p_kst 2.844575e-04   p_cons 6.055463e-01   p_joint 2.844575e-04

Joint ci ratio: 1.257162e-01	ci left: 2.663410e-04	ci right 3.023502e-04	k: 971	n:3420000
Cons ci ratio: 1.710780e-03	ci left: 6.050315e-01	ci right 6.060677e-01	k: 2070980	n:3420000
KS ci ratio: 1.257162e-01	ci left: 2.663410e-04	ci right 3.023502e-04	k: 971	n:3420000
SORBS1   3420000 perm   4867 sec   (703 perm/sec)   p_kst 2.839181e-04   p_cons 6.055497e-01   p_joint 2.839181e-04

Joint ci ratio: 1.257162e-01	ci left: 2.655645e-04	ci right 3.014687e-04	k: 971	n:3430000
Cons ci ratio: 1.708299e-03	ci left: 6.050280e-01	ci right 6.060628e-01	k: 2077021	n:3430000
KS ci ratio: 1.257162e-01	ci left: 2.655645e-04	ci right 3.014687e-04	k: 971	n:3430000
SORBS1   3430000 perm   4894 sec   (701 perm/sec)   p_kst 2.830904e-04   p_cons 6.055455e-01   p_joint 2.830904e-04

Joint ci ratio: 1.255871e-01	ci left: 2.653556e-04	ci right 3.011920e-04	k: 973	n:3440000
Cons ci ratio: 1.705805e-03	ci left: 6.050316e-01	ci right 6.060648e-01	k: 2083086	n:3440000
KS ci ratio: 1.255871e-01	ci left: 2.653556e-04	ci right 3.011920e-04	k: 973	n:3440000
SORBS1   3440000 perm   4921 sec   (699 perm/sec)   p_kst 2.828488e-04   p_cons 6.055483e-01   p_joint 2.828488e-04

Joint ci ratio: 1.253300e-01	ci left: 2.657095e-04	ci right 3.015148e-04	k: 977	n:3450000
Cons ci ratio: 1.703267e-03	ci left: 6.050501e-01	ci right 6.060819e-01	k: 2089203	n:3450000
KS ci ratio: 1.253300e-01	ci left: 2.657095e-04	ci right 3.015148e-04	k: 977	n:3450000
SORBS1   3450000 perm   4947 sec   (697 perm/sec)   p_kst 2.831884e-04   p_cons 6.055661e-01   p_joint 2.831884e-04

Joint ci ratio: 1.249472e-01	ci left: 2.666214e-04	ci right 3.024317e-04	k: 983	n:3460000
Cons ci ratio: 1.700748e-03	ci left: 6.050666e-01	ci right 6.060968e-01	k: 2095313	n:3460000
KS ci ratio: 1.249472e-01	ci left: 2.666214e-04	ci right 3.024317e-04	k: 983	n:3460000
SORBS1   3460000 perm   4975 sec   (696 perm/sec)   p_kst 2.841040e-04   p_cons 6.055818e-01   p_joint 2.841040e-04

Joint ci ratio: 1.248205e-01	ci left: 2.664114e-04	ci right 3.021545e-04	k: 985	n:3470000
Cons ci ratio: 1.698339e-03	ci left: 6.050550e-01	ci right 6.060837e-01	k: 2101326	n:3470000
KS ci ratio: 1.248205e-01	ci left: 2.664114e-04	ci right 3.021545e-04	k: 985	n:3470000
SORBS1   3470000 perm   5002 sec   (694 perm/sec)   p_kst 2.838617e-04   p_cons 6.055695e-01   p_joint 2.838617e-04

Joint ci ratio: 1.247573e-01	ci left: 2.659242e-04	ci right 3.015826e-04	k: 986	n:3480000
Cons ci ratio: 1.695848e-03	ci left: 6.050696e-01	ci right 6.060969e-01	k: 2107430	n:3480000
KS ci ratio: 1.247573e-01	ci left: 2.659242e-04	ci right 3.015826e-04	k: 986	n:3480000
SORBS1   3480000 perm   5029 sec   (692 perm/sec)   p_kst 2.833333e-04   p_cons 6.055833e-01   p_joint 2.833333e-04

Joint ci ratio: 1.246311e-01	ci left: 2.657175e-04	ci right 3.013094e-04	k: 988	n:3490000
Cons ci ratio: 1.693454e-03	ci left: 6.050598e-01	ci right 6.060856e-01	k: 2113449	n:3490000
KS ci ratio: 1.246311e-01	ci left: 2.657175e-04	ci right 3.013094e-04	k: 988	n:3490000
SORBS1   3490000 perm   5056 sec   (690 perm/sec)   p_kst 2.830946e-04   p_cons 6.055728e-01   p_joint 2.830946e-04

Joint ci ratio: 1.243798e-01	ci left: 2.660655e-04	ci right 3.016269e-04	k: 992	n:3500000
Cons ci ratio: 1.691081e-03	ci left: 6.050472e-01	ci right 6.060715e-01	k: 2119458	n:3500000
KS ci ratio: 1.243798e-01	ci left: 2.660655e-04	ci right 3.016269e-04	k: 992	n:3500000
SORBS1   3500000 perm   5083 sec   (689 perm/sec)   p_kst 2.834286e-04   p_cons 6.055594e-01   p_joint 2.834286e-04

Joint ci ratio: 1.243798e-01	ci left: 2.653075e-04	ci right 3.007676e-04	k: 992	n:3510000
Cons ci ratio: 1.688662e-03	ci left: 6.050503e-01	ci right 6.060732e-01	k: 2125522	n:3510000
KS ci ratio: 1.243798e-01	ci left: 2.653075e-04	ci right 3.007676e-04	k: 992	n:3510000
SORBS1   3510000 perm   5110 sec   (687 perm/sec)   p_kst 2.826211e-04   p_cons 6.055618e-01   p_joint 2.826211e-04

Joint ci ratio: 1.241300e-01	ci left: 2.656548e-04	ci right 3.010848e-04	k: 996	n:3520000
Cons ci ratio: 1.686275e-03	ci left: 6.050472e-01	ci right 6.060686e-01	k: 2131564	n:3520000
KS ci ratio: 1.241300e-01	ci left: 2.656548e-04	ci right 3.010848e-04	k: 996	n:3520000
SORBS1   3520000 perm   5137 sec   (685 perm/sec)   p_kst 2.829545e-04   p_cons 6.055580e-01   p_joint 2.829545e-04

Joint ci ratio: 1.240679e-01	ci left: 2.651768e-04	ci right 3.005239e-04	k: 997	n:3530000
Cons ci ratio: 1.683904e-03	ci left: 6.050423e-01	ci right 6.060623e-01	k: 2137600	n:3530000
KS ci ratio: 1.240679e-01	ci left: 2.651768e-04	ci right 3.005239e-04	k: 997	n:3530000
SORBS1   3530000 perm   5165 sec   (683 perm/sec)   p_kst 2.824363e-04   p_cons 6.055524e-01   p_joint 2.824363e-04

Joint ci ratio: 1.240058e-01	ci left: 2.647014e-04	ci right 2.999663e-04	k: 998	n:3540000
Cons ci ratio: 1.681561e-03	ci left: 6.050325e-01	ci right 6.060510e-01	k: 2143618	n:3540000
KS ci ratio: 1.240058e-01	ci left: 2.647014e-04	ci right 2.999663e-04	k: 998	n:3540000
SORBS1   3540000 perm   5192 sec   (682 perm/sec)   p_kst 2.819209e-04   p_cons 6.055418e-01   p_joint 2.819209e-04

Joint ci ratio: 1.238200e-01	ci left: 2.647746e-04	ci right 2.999925e-04	k: 1001	n:3550000
Cons ci ratio: 1.679220e-03	ci left: 6.050249e-01	ci right 6.060420e-01	k: 2149644	n:3550000
KS ci ratio: 1.238200e-01	ci left: 2.647746e-04	ci right 2.999925e-04	k: 1001	n:3550000
SORBS1   3550000 perm   5219 sec   (680 perm/sec)   p_kst 2.819718e-04   p_cons 6.055335e-01   p_joint 2.819718e-04

Joint ci ratio: 1.235736e-01	ci left: 2.651197e-04	ci right 3.003082e-04	k: 1005	n:3560000
Cons ci ratio: 1.676870e-03	ci left: 6.050230e-01	ci right 6.060386e-01	k: 2155690	n:3560000
KS ci ratio: 1.235736e-01	ci left: 2.651197e-04	ci right 3.003082e-04	k: 1005	n:3560000
SORBS1   3560000 perm   5246 sec   (679 perm/sec)   p_kst 2.823034e-04   p_cons 6.055309e-01   p_joint 2.823034e-04

Joint ci ratio: 1.234509e-01	ci left: 2.649200e-04	ci right 3.000445e-04	k: 1007	n:3570000
Cons ci ratio: 1.674596e-03	ci left: 6.050018e-01	ci right 6.060160e-01	k: 2161667	n:3570000
KS ci ratio: 1.234509e-01	ci left: 2.649200e-04	ci right 3.000445e-04	k: 1007	n:3570000
SORBS1   3570000 perm   5274 sec   (677 perm/sec)   p_kst 2.820728e-04   p_cons 6.055090e-01   p_joint 2.820728e-04

Joint ci ratio: 1.232067e-01	ci left: 2.652629e-04	ci right 3.003582e-04	k: 1011	n:3580000
Cons ci ratio: 1.672280e-03	ci left: 6.049955e-01	ci right 6.060083e-01	k: 2167697	n:3580000
KS ci ratio: 1.232067e-01	ci left: 2.652629e-04	ci right 3.003582e-04	k: 1011	n:3580000
SORBS1   3580000 perm   5302 sec   (675 perm/sec)   p_kst 2.824022e-04   p_cons 6.055020e-01   p_joint 2.824022e-04

Joint ci ratio: 1.230245e-01	ci left: 2.653339e-04	ci right 3.003829e-04	k: 1014	n:3590000
Cons ci ratio: 1.669946e-03	ci left: 6.049973e-01	ci right 6.060087e-01	k: 2173756	n:3590000
KS ci ratio: 1.230245e-01	ci left: 2.653339e-04	ci right 3.003829e-04	k: 1014	n:3590000
SORBS1   3590000 perm   5330 sec   (674 perm/sec)   p_kst 2.824513e-04   p_cons 6.055031e-01   p_joint 2.824513e-04

Joint ci ratio: 1.230245e-01	ci left: 2.645968e-04	ci right 2.995485e-04	k: 1014	n:3600000
Cons ci ratio: 1.667612e-03	ci left: 6.050016e-01	ci right 6.060116e-01	k: 2179824	n:3600000
KS ci ratio: 1.230245e-01	ci left: 2.645968e-04	ci right 2.995485e-04	k: 1014	n:3600000
SORBS1   3600000 perm   5357 sec   (672 perm/sec)   p_kst 2.816667e-04   p_cons 6.055067e-01   p_joint 2.816667e-04

Joint ci ratio: 1.227226e-01	ci left: 2.652064e-04	ci right 3.001463e-04	k: 1019	n:3610000
Cons ci ratio: 1.665290e-03	ci left: 6.050053e-01	ci right 6.060139e-01	k: 2185890	n:3610000
KS ci ratio: 1.227226e-01	ci left: 2.652064e-04	ci right 3.001463e-04	k: 1019	n:3610000
SORBS1   3610000 perm   5384 sec   (670 perm/sec)   p_kst 2.822715e-04   p_cons 6.055097e-01   p_joint 2.822715e-04

Joint ci ratio: 1.226625e-01	ci left: 2.647415e-04	ci right 2.996019e-04	k: 1020	n:3620000
Cons ci ratio: 1.662925e-03	ci left: 6.050242e-01	ci right 6.060314e-01	k: 2192011	n:3620000
KS ci ratio: 1.226625e-01	ci left: 2.647415e-04	ci right 2.996019e-04	k: 1020	n:3620000
SORBS1   3620000 perm   5413 sec   (669 perm/sec)   p_kst 2.817680e-04   p_cons 6.055279e-01   p_joint 2.817680e-04

Joint ci ratio: 1.226025e-01	ci left: 2.642792e-04	ci right 2.990605e-04	k: 1021	n:3630000
Cons ci ratio: 1.660635e-03	ci left: 6.050243e-01	ci right 6.060301e-01	k: 2198064	n:3630000
KS ci ratio: 1.226025e-01	ci left: 2.642792e-04	ci right 2.990605e-04	k: 1021	n:3630000
SORBS1   3630000 perm   5441 sec   (667 perm/sec)   p_kst 2.812672e-04   p_cons 6.055273e-01   p_joint 2.812672e-04

Joint ci ratio: 1.223633e-01	ci left: 2.646184e-04	ci right 2.993715e-04	k: 1025	n:3640000
Cons ci ratio: 1.658307e-03	ci left: 6.050381e-01	ci right 6.060425e-01	k: 2204167	n:3640000
KS ci ratio: 1.223633e-01	ci left: 2.646184e-04	ci right 2.993715e-04	k: 1025	n:3640000
SORBS1   3640000 perm   5469 sec   (666 perm/sec)   p_kst 2.815934e-04   p_cons 6.055404e-01   p_joint 2.815934e-04

Joint ci ratio: 1.222442e-01	ci left: 2.644246e-04	ci right 2.991160e-04	k: 1027	n:3650000
Cons ci ratio: 1.656023e-03	ci left: 6.050420e-01	ci right 6.060450e-01	k: 2210234	n:3650000
KS ci ratio: 1.222442e-01	ci left: 2.644246e-04	ci right 2.991160e-04	k: 1027	n:3650000
SORBS1   3650000 perm   5497 sec   (664 perm/sec)   p_kst 2.813699e-04   p_cons 6.055436e-01   p_joint 2.813699e-04

Joint ci ratio: 1.221848e-01	ci left: 2.639670e-04	ci right 2.985803e-04	k: 1028	n:3660000
Cons ci ratio: 1.653764e-03	ci left: 6.050412e-01	ci right 6.060428e-01	k: 2216284	n:3660000
KS ci ratio: 1.221848e-01	ci left: 2.639670e-04	ci right 2.985803e-04	k: 1028	n:3660000
SORBS1   3660000 perm   5525 sec   (662 perm/sec)   p_kst 2.808743e-04   p_cons 6.055421e-01   p_joint 2.808743e-04

Joint ci ratio: 1.220071e-01	ci left: 2.640402e-04	ci right 2.986091e-04	k: 1031	n:3670000
Cons ci ratio: 1.651490e-03	ci left: 6.050474e-01	ci right 6.060478e-01	k: 2222360	n:3670000
KS ci ratio: 1.220071e-01	ci left: 2.640402e-04	ci right 2.986091e-04	k: 1031	n:3670000
SORBS1   3670000 perm   5555 sec   (661 perm/sec)   p_kst 2.809264e-04   p_cons 6.055477e-01   p_joint 2.809264e-04

Joint ci ratio: 1.218891e-01	ci left: 2.638496e-04	ci right 2.983577e-04	k: 1033	n:3680000
Cons ci ratio: 1.649256e-03	ci left: 6.050450e-01	ci right 6.060440e-01	k: 2228404	n:3680000
KS ci ratio: 1.218891e-01	ci left: 2.638496e-04	ci right 2.983577e-04	k: 1033	n:3680000
SORBS1   3680000 perm   5583 sec   (659 perm/sec)   p_kst 2.807065e-04   p_cons 6.055446e-01   p_joint 2.807065e-04

Joint ci ratio: 1.218302e-01	ci left: 2.633973e-04	ci right 2.978284e-04	k: 1034	n:3690000
Cons ci ratio: 1.647012e-03	ci left: 6.050477e-01	ci right 6.060453e-01	k: 2234467	n:3690000
KS ci ratio: 1.218302e-01	ci left: 2.633973e-04	ci right 2.978284e-04	k: 1034	n:3690000
SORBS1   3690000 perm   5612 sec   (658 perm/sec)   p_kst 2.802168e-04   p_cons 6.055466e-01   p_joint 2.802168e-04

Joint ci ratio: 1.217714e-01	ci left: 2.629475e-04	ci right 2.973020e-04	k: 1035	n:3700000
Cons ci ratio: 1.644701e-03	ci left: 6.050729e-01	ci right 6.060691e-01	k: 2240613	n:3700000
KS ci ratio: 1.217714e-01	ci left: 2.629475e-04	ci right 2.973020e-04	k: 1035	n:3700000
SORBS1   3700000 perm   5641 sec   (656 perm/sec)   p_kst 2.797297e-04   p_cons 6.055711e-01   p_joint 2.797297e-04

Joint ci ratio: 1.217127e-01	ci left: 2.625000e-04	ci right 2.967784e-04	k: 1036	n:3710000
Cons ci ratio: 1.642490e-03	ci left: 6.050715e-01	ci right 6.060664e-01	k: 2246661	n:3710000
KS ci ratio: 1.217127e-01	ci left: 2.625000e-04	ci right 2.967784e-04	k: 1036	n:3710000
SORBS1   3710000 perm   5670 sec   (654 perm/sec)   p_kst 2.792453e-04   p_cons 6.055690e-01   p_joint 2.792453e-04

Joint ci ratio: 1.217128e-01	ci left: 2.617944e-04	ci right 2.959806e-04	k: 1036	n:3720000
Cons ci ratio: 1.640261e-03	ci left: 6.050779e-01	ci right 6.060714e-01	k: 2252738	n:3720000
KS ci ratio: 1.217128e-01	ci left: 2.617944e-04	ci right 2.959806e-04	k: 1036	n:3720000
SORBS1   3720000 perm   5698 sec   (653 perm/sec)   p_kst 2.784946e-04   p_cons 6.055747e-01   p_joint 2.784946e-04

Joint ci ratio: 1.216541e-01	ci left: 2.613525e-04	ci right 2.954633e-04	k: 1037	n:3730000
Cons ci ratio: 1.638149e-03	ci left: 6.050529e-01	ci right 6.060451e-01	k: 2258698	n:3730000
KS ci ratio: 1.216541e-01	ci left: 2.613525e-04	ci right 2.954633e-04	k: 1037	n:3730000
SORBS1   3730000 perm   5727 sec   (651 perm/sec)   p_kst 2.780161e-04   p_cons 6.055491e-01   p_joint 2.780161e-04

Joint ci ratio: 1.215956e-01	ci left: 2.609129e-04	ci right 2.949488e-04	k: 1038	n:3740000
Cons ci ratio: 1.635866e-03	ci left: 6.050801e-01	ci right 6.060710e-01	k: 2264853	n:3740000
KS ci ratio: 1.215956e-01	ci left: 2.609129e-04	ci right 2.949488e-04	k: 1038	n:3740000
SORBS1   3740000 perm   5755 sec   (650 perm/sec)   p_kst 2.775401e-04   p_cons 6.055757e-01   p_joint 2.775401e-04

Joint ci ratio: 1.214204e-01	ci left: 2.609928e-04	ci right 2.949866e-04	k: 1041	n:3750000
Cons ci ratio: 1.633717e-03	ci left: 6.050710e-01	ci right 6.060606e-01	k: 2270872	n:3750000
KS ci ratio: 1.214204e-01	ci left: 2.609928e-04	ci right 2.949866e-04	k: 1041	n:3750000
SORBS1   3750000 perm   5784 sec   (648 perm/sec)   p_kst 2.776000e-04   p_cons 6.055659e-01   p_joint 2.776000e-04

Joint ci ratio: 1.210723e-01	ci left: 2.618461e-04	ci right 2.958462e-04	k: 1047	n:3760000
Cons ci ratio: 1.631573e-03	ci left: 6.050630e-01	ci right 6.060512e-01	k: 2276895	n:3760000
KS ci ratio: 1.210723e-01	ci left: 2.618461e-04	ci right 2.958462e-04	k: 1047	n:3760000
SORBS1   3760000 perm   5813 sec   (647 perm/sec)   p_kst 2.784574e-04   p_cons 6.055572e-01   p_joint 2.784574e-04

Joint ci ratio: 1.208419e-01	ci left: 2.621804e-04	ci right 2.961545e-04	k: 1051	n:3770000
Cons ci ratio: 1.629375e-03	ci left: 6.050733e-01	ci right 6.060602e-01	k: 2282987	n:3770000
KS ci ratio: 1.208419e-01	ci left: 2.621804e-04	ci right 2.961545e-04	k: 1051	n:3770000
SORBS1   3770000 perm   5843 sec   (645 perm/sec)   p_kst 2.787798e-04   p_cons 6.055668e-01   p_joint 2.787798e-04

Joint ci ratio: 1.207272e-01	ci left: 2.619999e-04	ci right 2.959161e-04	k: 1053	n:3780000
Cons ci ratio: 1.627238e-03	ci left: 6.050679e-01	ci right 6.060536e-01	k: 2289020	n:3780000
KS ci ratio: 1.207272e-01	ci left: 2.619999e-04	ci right 2.959161e-04	k: 1053	n:3780000
SORBS1   3780000 perm   5872 sec   (644 perm/sec)   p_kst 2.785714e-04   p_cons 6.055608e-01   p_joint 2.785714e-04

Joint ci ratio: 1.204418e-01	ci left: 2.625881e-04	ci right 2.964944e-04	k: 1058	n:3790000
Cons ci ratio: 1.625115e-03	ci left: 6.050613e-01	ci right 6.060457e-01	k: 2295048	n:3790000
KS ci ratio: 1.204418e-01	ci left: 2.625881e-04	ci right 2.964944e-04	k: 1058	n:3790000
SORBS1   3790000 perm   5901 sec   (642 perm/sec)   p_kst 2.791557e-04   p_cons 6.055536e-01   p_joint 2.791557e-04

Joint ci ratio: 1.202150e-01	ci left: 2.629180e-04	ci right 2.967984e-04	k: 1062	n:3800000
Cons ci ratio: 1.622966e-03	ci left: 6.050647e-01	ci right 6.060478e-01	k: 2301114	n:3800000
KS ci ratio: 1.202150e-01	ci left: 2.629180e-04	ci right 2.967984e-04	k: 1062	n:3800000
SORBS1   3800000 perm   5931 sec   (641 perm/sec)   p_kst 2.794737e-04   p_cons 6.055563e-01   p_joint 2.794737e-04

Joint ci ratio: 1.201021e-01	ci left: 2.627371e-04	ci right 2.965602e-04	k: 1064	n:3810000
Cons ci ratio: 1.620856e-03	ci left: 6.050592e-01	ci right 6.060409e-01	k: 2307146	n:3810000
KS ci ratio: 1.201021e-01	ci left: 2.627371e-04	ci right 2.965602e-04	k: 1064	n:3810000
SORBS1   3810000 perm   5960 sec   (639 perm/sec)   p_kst 2.792651e-04   p_cons 6.055501e-01   p_joint 2.792651e-04

Joint ci ratio: 1.199333e-01	ci left: 2.628111e-04	ci right 2.965927e-04	k: 1067	n:3820000
Cons ci ratio: 1.618693e-03	ci left: 6.050715e-01	ci right 6.060519e-01	k: 2313246	n:3820000
KS ci ratio: 1.199333e-01	ci left: 2.628111e-04	ci right 2.965927e-04	k: 1067	n:3820000
SORBS1   3820000 perm   5989 sec   (638 perm/sec)   p_kst 2.793194e-04   p_cons 6.055618e-01   p_joint 2.793194e-04

Joint ci ratio: 1.198772e-01	ci left: 2.623782e-04	ci right 2.960873e-04	k: 1068	n:3830000
Cons ci ratio: 1.616613e-03	ci left: 6.050620e-01	ci right 6.060412e-01	k: 2319263	n:3830000
KS ci ratio: 1.198772e-01	ci left: 2.623782e-04	ci right 2.960873e-04	k: 1068	n:3830000
SORBS1   3830000 perm   6018 sec   (636 perm/sec)   p_kst 2.788512e-04   p_cons 6.055517e-01   p_joint 2.788512e-04

Joint ci ratio: 1.195978e-01	ci left: 2.629580e-04	ci right 2.966573e-04	k: 1073	n:3840000
Cons ci ratio: 1.614549e-03	ci left: 6.050500e-01	ci right 6.060279e-01	k: 2325270	n:3840000
KS ci ratio: 1.195978e-01	ci left: 2.629580e-04	ci right 2.966573e-04	k: 1073	n:3840000
SORBS1   3840000 perm   6048 sec   (635 perm/sec)   p_kst 2.794271e-04   p_cons 6.055391e-01   p_joint 2.794271e-04

Joint ci ratio: 1.194311e-01	ci left: 2.630309e-04	ci right 2.966892e-04	k: 1076	n:3850000
Cons ci ratio: 1.612396e-03	ci left: 6.050669e-01	ci right 6.060436e-01	k: 2331388	n:3850000
KS ci ratio: 1.194311e-01	ci left: 2.630309e-04	ci right 2.966892e-04	k: 1076	n:3850000
SORBS1   3850000 perm   6077 sec   (633 perm/sec)   p_kst 2.794805e-04   p_cons 6.055553e-01   p_joint 2.794805e-04

Joint ci ratio: 1.193204e-01	ci left: 2.628521e-04	ci right 2.964542e-04	k: 1078	n:3860000
Cons ci ratio: 1.610331e-03	ci left: 6.050602e-01	ci right 6.060355e-01	k: 2337415	n:3860000
KS ci ratio: 1.193204e-01	ci left: 2.628521e-04	ci right 2.964542e-04	k: 1078	n:3860000
SORBS1   3860000 perm   6108 sec   (632 perm/sec)   p_kst 2.792746e-04   p_cons 6.055479e-01   p_joint 2.792746e-04

Joint ci ratio: 1.190998e-01	ci left: 2.631757e-04	ci right 2.967526e-04	k: 1082	n:3870000
Cons ci ratio: 1.608146e-03	ci left: 6.050914e-01	ci right 6.060655e-01	k: 2343589	n:3870000
KS ci ratio: 1.190998e-01	ci left: 2.631757e-04	ci right 2.967526e-04	k: 1082	n:3870000
SORBS1   3870000 perm   6138 sec   (631 perm/sec)   p_kst 2.795866e-04   p_cons 6.055786e-01   p_joint 2.795866e-04

Joint ci ratio: 1.189900e-01	ci left: 2.629975e-04	ci right 2.965185e-04	k: 1084	n:3880000
Cons ci ratio: 1.606012e-03	ci left: 6.051102e-01	ci right 6.060830e-01	k: 2349715	n:3880000
KS ci ratio: 1.189900e-01	ci left: 2.629975e-04	ci right 2.965185e-04	k: 1084	n:3880000
SORBS1   3880000 perm   6167 sec   (629 perm/sec)   p_kst 2.793814e-04   p_cons 6.055966e-01   p_joint 2.793814e-04

Joint ci ratio: 1.188805e-01	ci left: 2.628203e-04	ci right 2.962857e-04	k: 1086	n:3890000
Cons ci ratio: 1.603928e-03	ci left: 6.051162e-01	ci right 6.060878e-01	k: 2355792	n:3890000
KS ci ratio: 1.188805e-01	ci left: 2.628203e-04	ci right 2.962857e-04	k: 1086	n:3890000
SORBS1   3890000 perm   6198 sec   (628 perm/sec)   p_kst 2.791774e-04   p_cons 6.056021e-01   p_joint 2.791774e-04

Joint ci ratio: 1.188805e-01	ci left: 2.621464e-04	ci right 2.955260e-04	k: 1086	n:3900000
Cons ci ratio: 1.601854e-03	ci left: 6.051217e-01	ci right 6.060920e-01	k: 2361867	n:3900000
KS ci ratio: 1.188805e-01	ci left: 2.621464e-04	ci right 2.955260e-04	k: 1086	n:3900000
SORBS1   3900000 perm   6229 sec   (626 perm/sec)   p_kst 2.784615e-04   p_cons 6.056069e-01   p_joint 2.784615e-04

Joint ci ratio: 1.186080e-01	ci left: 2.627167e-04	ci right 2.960869e-04	k: 1091	n:3910000
Cons ci ratio: 1.599733e-03	ci left: 6.051435e-01	ci right 6.061126e-01	k: 2368006	n:3910000
KS ci ratio: 1.186080e-01	ci left: 2.627167e-04	ci right 2.960869e-04	k: 1091	n:3910000
SORBS1   3910000 perm   6259 sec   (625 perm/sec)   p_kst 2.790281e-04   p_cons 6.056281e-01   p_joint 2.790281e-04

Joint ci ratio: 1.182296e-01	ci left: 2.637794e-04	ci right 2.971702e-04	k: 1098	n:3920000
Cons ci ratio: 1.597645e-03	ci left: 6.051581e-01	ci right 6.061259e-01	k: 2374117	n:3920000
KS ci ratio: 1.182296e-01	ci left: 2.637794e-04	ci right 2.971702e-04	k: 1098	n:3920000
SORBS1   3920000 perm   6289 sec   (623 perm/sec)   p_kst 2.801020e-04   p_cons 6.056421e-01   p_joint 2.801020e-04

Joint ci ratio: 1.181222e-01	ci left: 2.636020e-04	ci right 2.969380e-04	k: 1100	n:3930000
Cons ci ratio: 1.595506e-03	ci left: 6.051899e-01	ci right 6.061565e-01	k: 2380296	n:3930000
KS ci ratio: 1.181222e-01	ci left: 2.636020e-04	ci right 2.969380e-04	k: 1100	n:3930000
SORBS1   3930000 perm   6319 sec   (622 perm/sec)   p_kst 2.798982e-04   p_cons 6.056733e-01   p_joint 2.798982e-04

Joint ci ratio: 1.180686e-01	ci left: 2.631793e-04	ci right 2.964456e-04	k: 1101	n:3940000
Cons ci ratio: 1.593462e-03	ci left: 6.051962e-01	ci right 6.061615e-01	k: 2386375	n:3940000
KS ci ratio: 1.180686e-01	ci left: 2.631793e-04	ci right 2.964456e-04	k: 1101	n:3940000
SORBS1   3940000 perm   6350 sec   (621 perm/sec)   p_kst 2.794416e-04   p_cons 6.056789e-01   p_joint 2.794416e-04

Joint ci ratio: 1.180687e-01	ci left: 2.625130e-04	ci right 2.956951e-04	k: 1101	n:3950000
Cons ci ratio: 1.591480e-03	ci left: 6.051857e-01	ci right 6.061498e-01	k: 2392388	n:3950000
KS ci ratio: 1.180687e-01	ci left: 2.625130e-04	ci right 2.956951e-04	k: 1101	n:3950000
SORBS1   3950000 perm   6380 sec   (619 perm/sec)   p_kst 2.787342e-04   p_cons 6.056678e-01   p_joint 2.787342e-04

Joint ci ratio: 1.178549e-01	ci left: 2.628304e-04	ci right 2.959883e-04	k: 1105	n:3960000
Cons ci ratio: 1.589469e-03	ci left: 6.051864e-01	ci right 6.061493e-01	k: 2398445	n:3960000
KS ci ratio: 1.178549e-01	ci left: 2.628304e-04	ci right 2.959883e-04	k: 1105	n:3960000
SORBS1   3960000 perm   6410 sec   (618 perm/sec)   p_kst 2.790404e-04   p_cons 6.056679e-01   p_joint 2.790404e-04

Joint ci ratio: 1.176954e-01	ci left: 2.629018e-04	ci right 2.960207e-04	k: 1108	n:3970000
Cons ci ratio: 1.587459e-03	ci left: 6.051891e-01	ci right 6.061508e-01	k: 2404510	n:3970000
KS ci ratio: 1.176954e-01	ci left: 2.629018e-04	ci right 2.960207e-04	k: 1108	n:3970000
SORBS1   3970000 perm   6440 sec   (616 perm/sec)   p_kst 2.790932e-04   p_cons 6.056700e-01   p_joint 2.790932e-04

Joint ci ratio: 1.174310e-01	ci left: 2.634605e-04	ci right 2.965701e-04	k: 1113	n:3980000
Cons ci ratio: 1.585359e-03	ci left: 6.052212e-01	ci right 6.061817e-01	k: 2410692	n:3980000
KS ci ratio: 1.174310e-01	ci left: 2.634605e-04	ci right 2.965701e-04	k: 1113	n:3980000
SORBS1   3980000 perm   6471 sec   (615 perm/sec)   p_kst 2.796482e-04   p_cons 6.057015e-01   p_joint 2.796482e-04

Joint ci ratio: 1.171683e-01	ci left: 2.640166e-04	ci right 2.971167e-04	k: 1118	n:3990000
Cons ci ratio: 1.583434e-03	ci left: 6.052027e-01	ci right 6.061620e-01	k: 2416673	n:3990000
KS ci ratio: 1.171683e-01	ci left: 2.640166e-04	ci right 2.971167e-04	k: 1118	n:3990000
SORBS1   3990000 perm   6502 sec   (614 perm/sec)   p_kst 2.802005e-04   p_cons 6.056825e-01   p_joint 2.802005e-04

Joint ci ratio: 1.170637e-01	ci left: 2.638419e-04	ci right 2.968885e-04	k: 1120	n:4000000
Cons ci ratio: 1.581483e-03	ci left: 6.051944e-01	ci right 6.061525e-01	k: 2422694	n:4000000
KS ci ratio: 1.170637e-01	ci left: 2.638419e-04	ci right 2.968885e-04	k: 1120	n:4000000
SORBS1   4000000 perm   6532 sec   (612 perm/sec)   p_kst 2.800000e-04   p_cons 6.056735e-01   p_joint 2.800000e-04

Joint ci ratio: 1.170116e-01	ci left: 2.634260e-04	ci right 2.964048e-04	k: 1121	n:4010000
Cons ci ratio: 1.579577e-03	ci left: 6.051748e-01	ci right 6.061317e-01	k: 2428670	n:4010000
KS ci ratio: 1.170116e-01	ci left: 2.634260e-04	ci right 2.964048e-04	k: 1121	n:4010000
SORBS1   4010000 perm   6563 sec   (611 perm/sec)   p_kst 2.795511e-04   p_cons 6.056534e-01   p_joint 2.795511e-04

Joint ci ratio: 1.168035e-01	ci left: 2.637367e-04	ci right 2.966916e-04	k: 1125	n:4020000
Cons ci ratio: 1.577547e-03	ci left: 6.051950e-01	ci right 6.061507e-01	k: 2434805	n:4020000
KS ci ratio: 1.168035e-01	ci left: 2.637367e-04	ci right 2.966916e-04	k: 1125	n:4020000
SORBS1   4020000 perm   6594 sec   (610 perm/sec)   p_kst 2.798507e-04   p_cons 6.056729e-01   p_joint 2.798507e-04

Joint ci ratio: 1.166482e-01	ci left: 2.638049e-04	ci right 2.967216e-04	k: 1128	n:4030000
Cons ci ratio: 1.575640e-03	ci left: 6.051797e-01	ci right 6.061343e-01	k: 2440798	n:4030000
KS ci ratio: 1.166482e-01	ci left: 2.638049e-04	ci right 2.967216e-04	k: 1128	n:4030000
SORBS1   4030000 perm   6626 sec   (608 perm/sec)   p_kst 2.799007e-04   p_cons 6.056571e-01   p_joint 2.799007e-04

Joint ci ratio: 1.165451e-01	ci left: 2.636326e-04	ci right 2.964966e-04	k: 1130	n:4040000
Cons ci ratio: 1.573721e-03	ci left: 6.051705e-01	ci right 6.061239e-01	k: 2446815	n:4040000
KS ci ratio: 1.165451e-01	ci left: 2.636326e-04	ci right 2.964966e-04	k: 1130	n:4040000
SORBS1   4040000 perm   6657 sec   (607 perm/sec)   p_kst 2.797030e-04   p_cons 6.056473e-01   p_joint 2.797030e-04

Joint ci ratio: 1.163395e-01	ci left: 2.639405e-04	ci right 2.967809e-04	k: 1134	n:4050000
Cons ci ratio: 1.571805e-03	ci left: 6.051626e-01	ci right 6.061148e-01	k: 2452837	n:4050000
KS ci ratio: 1.163395e-01	ci left: 2.639405e-04	ci right 2.967809e-04	k: 1134	n:4050000
SORBS1   4050000 perm   6688 sec   (606 perm/sec)   p_kst 2.800000e-04   p_cons 6.056388e-01   p_joint 2.800000e-04

Joint ci ratio: 1.162883e-01	ci left: 2.635295e-04	ci right 2.963034e-04	k: 1135	n:4060000
Cons ci ratio: 1.569905e-03	ci left: 6.051520e-01	ci right 6.061030e-01	k: 2458848	n:4060000
KS ci ratio: 1.162883e-01	ci left: 2.635295e-04	ci right 2.963034e-04	k: 1135	n:4060000
SORBS1   4060000 perm   6719 sec   (604 perm/sec)   p_kst 2.795567e-04   p_cons 6.056276e-01   p_joint 2.795567e-04

Joint ci ratio: 1.160841e-01	ci left: 2.638363e-04	ci right 2.965867e-04	k: 1139	n:4070000
Cons ci ratio: 1.567917e-03	ci left: 6.051705e-01	ci right 6.061203e-01	k: 2464977	n:4070000
KS ci ratio: 1.160841e-01	ci left: 2.638363e-04	ci right 2.965867e-04	k: 1139	n:4070000
SORBS1   4070000 perm   6751 sec   (603 perm/sec)   p_kst 2.798526e-04   p_cons 6.056455e-01   p_joint 2.798526e-04

Joint ci ratio: 1.160841e-01	ci left: 2.631896e-04	ci right 2.958598e-04	k: 1139	n:4080000
Cons ci ratio: 1.565993e-03	ci left: 6.051714e-01	ci right 6.061201e-01	k: 2471035	n:4080000
KS ci ratio: 1.160841e-01	ci left: 2.631896e-04	ci right 2.958598e-04	k: 1139	n:4080000
SORBS1   4080000 perm   6781 sec   (602 perm/sec)   p_kst 2.791667e-04   p_cons 6.056458e-01   p_joint 2.791667e-04

Joint ci ratio: 1.158304e-01	ci left: 2.637332e-04	ci right 2.963943e-04	k: 1144	n:4090000
Cons ci ratio: 1.564068e-03	ci left: 6.051748e-01	ci right 6.061223e-01	k: 2477103	n:4090000
KS ci ratio: 1.158304e-01	ci left: 2.637332e-04	ci right 2.963943e-04	k: 1144	n:4090000
SORBS1   4090000 perm   6813 sec   (600 perm/sec)   p_kst 2.797066e-04   p_cons 6.056487e-01   p_joint 2.797066e-04

Joint ci ratio: 1.156286e-01	ci left: 2.640373e-04	ci right 2.966753e-04	k: 1148	n:4100000
Cons ci ratio: 1.562167e-03	ci left: 6.051731e-01	ci right 6.061194e-01	k: 2483150	n:4100000
KS ci ratio: 1.156286e-01	ci left: 2.640373e-04	ci right 2.966753e-04	k: 1148	n:4100000
SORBS1   4100000 perm   6845 sec   (599 perm/sec)   p_kst 2.800000e-04   p_cons 6.056463e-01   p_joint 2.800000e-04

Joint ci ratio: 1.153278e-01	ci left: 2.648126e-04	ci right 2.974554e-04	k: 1154	n:4110000
Cons ci ratio: 1.560254e-03	ci left: 6.051770e-01	ci right 6.061222e-01	k: 2489220	n:4110000
KS ci ratio: 1.153278e-01	ci left: 2.648126e-04	ci right 2.974554e-04	k: 1154	n:4110000
SORBS1   4110000 perm   6877 sec   (598 perm/sec)   p_kst 2.807786e-04   p_cons 6.056496e-01   p_joint 2.807786e-04

Joint ci ratio: 1.152281e-01	ci left: 2.646412e-04	ci right 2.972329e-04	k: 1156	n:4120000
Cons ci ratio: 1.558367e-03	ci left: 6.051755e-01	ci right 6.061195e-01	k: 2495268	n:4120000
KS ci ratio: 1.152281e-01	ci left: 2.646412e-04	ci right 2.972329e-04	k: 1156	n:4120000
SORBS1   4120000 perm   6908 sec   (596 perm/sec)   p_kst 2.805825e-04   p_cons 6.056476e-01   p_joint 2.805825e-04

Joint ci ratio: 1.151783e-01	ci left: 2.642356e-04	ci right 2.967623e-04	k: 1157	n:4130000
Cons ci ratio: 1.556493e-03	ci left: 6.051718e-01	ci right 6.061147e-01	k: 2501307	n:4130000
KS ci ratio: 1.151783e-01	ci left: 2.642356e-04	ci right 2.967623e-04	k: 1157	n:4130000
SORBS1   4130000 perm   6940 sec   (595 perm/sec)   p_kst 2.801453e-04   p_cons 6.056433e-01   p_joint 2.801453e-04

Joint ci ratio: 1.148811e-01	ci left: 2.650050e-04	ci right 2.975364e-04	k: 1163	n:4140000
Cons ci ratio: 1.554547e-03	ci left: 6.051923e-01	ci right 6.061341e-01	k: 2507446	n:4140000
KS ci ratio: 1.148811e-01	ci left: 2.650050e-04	ci right 2.975364e-04	k: 1163	n:4140000
SORBS1   4140000 perm   6971 sec   (594 perm/sec)   p_kst 2.809179e-04   p_cons 6.056633e-01   p_joint 2.809179e-04

Joint ci ratio: 1.147333e-01	ci left: 2.650685e-04	ci right 2.975631e-04	k: 1166	n:4150000
Cons ci ratio: 1.552683e-03	ci left: 6.051899e-01	ci right 6.061305e-01	k: 2513490	n:4150000
KS ci ratio: 1.147333e-01	ci left: 2.650685e-04	ci right 2.975631e-04	k: 1166	n:4150000
SORBS1   4150000 perm   7003 sec   (593 perm/sec)   p_kst 2.809639e-04   p_cons 6.056602e-01   p_joint 2.809639e-04

Joint ci ratio: 1.146351e-01	ci left: 2.648983e-04	ci right 2.973424e-04	k: 1168	n:4160000
Cons ci ratio: 1.550801e-03	ci left: 6.051948e-01	ci right 6.061343e-01	k: 2519565	n:4160000
KS ci ratio: 1.146351e-01	ci left: 2.648983e-04	ci right 2.973424e-04	k: 1168	n:4160000
SORBS1   4160000 perm   7035 sec   (591 perm/sec)   p_kst 2.807692e-04   p_cons 6.056647e-01   p_joint 2.807692e-04

Joint ci ratio: 1.145372e-01	ci left: 2.647289e-04	ci right 2.971227e-04	k: 1170	n:4170000
Cons ci ratio: 1.548966e-03	ci left: 6.051876e-01	ci right 6.061259e-01	k: 2525589	n:4170000
KS ci ratio: 1.145372e-01	ci left: 2.647289e-04	ci right 2.971227e-04	k: 1170	n:4170000
SORBS1   4170000 perm   7067 sec   (590 perm/sec)   p_kst 2.805755e-04   p_cons 6.056568e-01   p_joint 2.805755e-04

Joint ci ratio: 1.143908e-01	ci left: 2.647928e-04	ci right 2.971501e-04	k: 1173	n:4180000
Cons ci ratio: 1.547139e-03	ci left: 6.051796e-01	ci right 6.061169e-01	k: 2531610	n:4180000
KS ci ratio: 1.143908e-01	ci left: 2.647928e-04	ci right 2.971501e-04	k: 1173	n:4180000
SORBS1   4180000 perm   7098 sec   (589 perm/sec)   p_kst 2.806220e-04   p_cons 6.056483e-01   p_joint 2.806220e-04

Joint ci ratio: 1.143421e-01	ci left: 2.643926e-04	ci right 2.966864e-04	k: 1174	n:4190000
Cons ci ratio: 1.545346e-03	ci left: 6.051636e-01	ci right 6.060997e-01	k: 2537597	n:4190000
KS ci ratio: 1.143421e-01	ci left: 2.643926e-04	ci right 2.966864e-04	k: 1174	n:4190000
SORBS1   4190000 perm   7130 sec   (588 perm/sec)   p_kst 2.801909e-04   p_cons 6.056317e-01   p_joint 2.801909e-04

Joint ci ratio: 1.140030e-01	ci left: 2.653822e-04	ci right 2.976942e-04	k: 1181	n:4200000
Cons ci ratio: 1.543520e-03	ci left: 6.051596e-01	ci right 6.060946e-01	k: 2543634	n:4200000
KS ci ratio: 1.140030e-01	ci left: 2.653822e-04	ci right 2.976942e-04	k: 1181	n:4200000
SORBS1   4200000 perm   7162 sec   (586 perm/sec)   p_kst 2.811905e-04   p_cons 6.056271e-01   p_joint 2.811905e-04

Joint ci ratio: 1.138586e-01	ci left: 2.654441e-04	ci right 2.977200e-04	k: 1184	n:4210000
Cons ci ratio: 1.541699e-03	ci left: 6.051558e-01	ci right 6.060897e-01	k: 2549672	n:4210000
KS ci ratio: 1.138586e-01	ci left: 2.654441e-04	ci right 2.977200e-04	k: 1184	n:4210000
SORBS1   4210000 perm   7194 sec   (585 perm/sec)   p_kst 2.812352e-04   p_cons 6.056228e-01   p_joint 2.812352e-04

Joint ci ratio: 1.137147e-01	ci left: 2.655058e-04	ci right 2.977456e-04	k: 1187	n:4220000
Cons ci ratio: 1.539806e-03	ci left: 6.051767e-01	ci right 6.061095e-01	k: 2555814	n:4220000
KS ci ratio: 1.137147e-01	ci left: 2.655058e-04	ci right 2.977456e-04	k: 1187	n:4220000
SORBS1   4220000 perm   7227 sec   (584 perm/sec)   p_kst 2.812796e-04   p_cons 6.056431e-01   p_joint 2.812796e-04

Joint ci ratio: 1.135714e-01	ci left: 2.655672e-04	ci right 2.977711e-04	k: 1190	n:4230000
Cons ci ratio: 1.538004e-03	ci left: 6.051712e-01	ci right 6.061029e-01	k: 2561845	n:4230000
KS ci ratio: 1.135714e-01	ci left: 2.655672e-04	ci right 2.977711e-04	k: 1190	n:4230000
SORBS1   4230000 perm   7259 sec   (583 perm/sec)   p_kst 2.813239e-04   p_cons 6.056371e-01   p_joint 2.813239e-04

Joint ci ratio: 1.135714e-01	ci left: 2.649408e-04	ci right 2.970688e-04	k: 1190	n:4240000
Cons ci ratio: 1.536162e-03	ci left: 6.051804e-01	ci right 6.061110e-01	k: 2567938	n:4240000
KS ci ratio: 1.135714e-01	ci left: 2.649408e-04	ci right 2.970688e-04	k: 1190	n:4240000
SORBS1   4240000 perm   7292 sec   (581 perm/sec)   p_kst 2.806604e-04   p_cons 6.056458e-01   p_joint 2.806604e-04

Joint ci ratio: 1.133338e-01	ci left: 2.654605e-04	ci right 2.975797e-04	k: 1195	n:4250000
Cons ci ratio: 1.534388e-03	ci left: 6.051702e-01	ci right 6.060997e-01	k: 2573949	n:4250000
KS ci ratio: 1.133338e-01	ci left: 2.654605e-04	ci right 2.975797e-04	k: 1195	n:4250000
SORBS1   4250000 perm   7324 sec   (580 perm/sec)   p_kst 2.811765e-04   p_cons 6.056351e-01   p_joint 2.811765e-04

Joint ci ratio: 1.132391e-01	ci left: 2.652936e-04	ci right 2.973639e-04	k: 1197	n:4260000
Cons ci ratio: 1.532552e-03	ci left: 6.051813e-01	ci right 6.061097e-01	k: 2580050	n:4260000
KS ci ratio: 1.132391e-01	ci left: 2.652936e-04	ci right 2.973639e-04	k: 1197	n:4260000
SORBS1   4260000 perm   7357 sec   (579 perm/sec)   p_kst 2.809859e-04   p_cons 6.056455e-01   p_joint 2.809859e-04

Joint ci ratio: 1.131447e-01	ci left: 2.651274e-04	ci right 2.971492e-04	k: 1199	n:4270000
Cons ci ratio: 1.530753e-03	ci left: 6.051829e-01	ci right 6.061102e-01	k: 2586111	n:4270000
KS ci ratio: 1.131447e-01	ci left: 2.651274e-04	ci right 2.971492e-04	k: 1199	n:4270000
SORBS1   4270000 perm   7390 sec   (578 perm/sec)   p_kst 2.807963e-04   p_cons 6.056466e-01   p_joint 2.807963e-04

Joint ci ratio: 1.128629e-01	ci left: 2.658702e-04	ci right 2.978964e-04	k: 1205	n:4280000
Cons ci ratio: 1.528949e-03	ci left: 6.051880e-01	ci right 6.061142e-01	k: 2592187	n:4280000
KS ci ratio: 1.128629e-01	ci left: 2.658702e-04	ci right 2.978964e-04	k: 1205	n:4280000
SORBS1   4280000 perm   7423 sec   (577 perm/sec)   p_kst 2.815421e-04   p_cons 6.056512e-01   p_joint 2.815421e-04

Joint ci ratio: 1.127228e-01	ci left: 2.659300e-04	ci right 2.979210e-04	k: 1208	n:4290000
Cons ci ratio: 1.527172e-03	ci left: 6.051868e-01	ci right 6.061119e-01	k: 2598236	n:4290000
KS ci ratio: 1.127228e-01	ci left: 2.659300e-04	ci right 2.979210e-04	k: 1208	n:4290000
SORBS1   4290000 perm   7455 sec   (575 perm/sec)   p_kst 2.815851e-04   p_cons 6.056494e-01   p_joint 2.815851e-04

Joint ci ratio: 1.126762e-01	ci left: 2.655376e-04	ci right 2.974673e-04	k: 1209	n:4300000
Cons ci ratio: 1.525424e-03	ci left: 6.051784e-01	ci right 6.061024e-01	k: 2604254	n:4300000
KS ci ratio: 1.126762e-01	ci left: 2.655376e-04	ci right 2.974673e-04	k: 1209	n:4300000
SORBS1   4300000 perm   7488 sec   (574 perm/sec)   p_kst 2.811628e-04   p_cons 6.056405e-01   p_joint 2.811628e-04

Joint ci ratio: 1.126297e-01	ci left: 2.651470e-04	ci right 2.970156e-04	k: 1210	n:4310000
Cons ci ratio: 1.523630e-03	ci left: 6.051862e-01	ci right 6.061092e-01	k: 2610342	n:4310000
KS ci ratio: 1.126297e-01	ci left: 2.651470e-04	ci right 2.970156e-04	k: 1210	n:4310000
SORBS1   4310000 perm   7521 sec   (573 perm/sec)   p_kst 2.807425e-04   p_cons 6.056478e-01   p_joint 2.807425e-04

Joint ci ratio: 1.123517e-01	ci left: 2.658830e-04	ci right 2.977560e-04	k: 1216	n:4320000
Cons ci ratio: 1.521913e-03	ci left: 6.051716e-01	ci right 6.060935e-01	k: 2616333	n:4320000
KS ci ratio: 1.123517e-01	ci left: 2.658830e-04	ci right 2.977560e-04	k: 1216	n:4320000
SORBS1   4320000 perm   7554 sec   (572 perm/sec)   p_kst 2.814815e-04   p_cons 6.056326e-01   p_joint 2.814815e-04

Joint ci ratio: 1.122595e-01	ci left: 2.657179e-04	ci right 2.975432e-04	k: 1218	n:4330000
Cons ci ratio: 1.520202e-03	ci left: 6.051573e-01	ci right 6.060782e-01	k: 2622325	n:4330000
KS ci ratio: 1.122595e-01	ci left: 2.657179e-04	ci right 2.975432e-04	k: 1218	n:4330000
SORBS1   4330000 perm   7586 sec   (571 perm/sec)   p_kst 2.812933e-04   p_cons 6.056178e-01   p_joint 2.812933e-04

Joint ci ratio: 1.121675e-01	ci left: 2.655535e-04	ci right 2.973314e-04	k: 1220	n:4340000
Cons ci ratio: 1.518472e-03	ci left: 6.051509e-01	ci right 6.060707e-01	k: 2628351	n:4340000
KS ci ratio: 1.121675e-01	ci left: 2.655535e-04	ci right 2.973314e-04	k: 1220	n:4340000
SORBS1   4340000 perm   7619 sec   (570 perm/sec)   p_kst 2.811060e-04   p_cons 6.056108e-01   p_joint 2.811060e-04

Joint ci ratio: 1.121216e-01	ci left: 2.651665e-04	ci right 2.968842e-04	k: 1221	n:4350000
Cons ci ratio: 1.516707e-03	ci left: 6.051573e-01	ci right 6.060761e-01	k: 2634433	n:4350000
KS ci ratio: 1.121216e-01	ci left: 2.651665e-04	ci right 2.968842e-04	k: 1221	n:4350000
SORBS1   4350000 perm   7652 sec   (568 perm/sec)   p_kst 2.806897e-04   p_cons 6.056168e-01   p_joint 2.806897e-04

Joint ci ratio: 1.120300e-01	ci left: 2.650042e-04	ci right 2.966749e-04	k: 1223	n:4360000
Cons ci ratio: 1.514953e-03	ci left: 6.051622e-01	ci right 6.060799e-01	k: 2640508	n:4360000
KS ci ratio: 1.120300e-01	ci left: 2.650042e-04	ci right 2.966749e-04	k: 1223	n:4360000
SORBS1   4360000 perm   7685 sec   (567 perm/sec)   p_kst 2.805046e-04   p_cons 6.056211e-01   p_joint 2.805046e-04

Joint ci ratio: 1.118930e-01	ci left: 2.650650e-04	ci right 2.967017e-04	k: 1226	n:4370000
Cons ci ratio: 1.513209e-03	ci left: 6.051656e-01	ci right 6.060823e-01	k: 2646577	n:4370000
KS ci ratio: 1.118930e-01	ci left: 2.650650e-04	ci right 2.967017e-04	k: 1226	n:4370000
SORBS1   4370000 perm   7718 sec   (566 perm/sec)   p_kst 2.805492e-04   p_cons 6.056240e-01   p_joint 2.805492e-04

Joint ci ratio: 1.116656e-01	ci left: 2.655695e-04	ci right 2.971977e-04	k: 1231	n:4380000
Cons ci ratio: 1.511490e-03	ci left: 6.051631e-01	ci right 6.060787e-01	k: 2652620	n:4380000
KS ci ratio: 1.116656e-01	ci left: 2.655695e-04	ci right 2.971977e-04	k: 1231	n:4380000
SORBS1   4380000 perm   7751 sec   (565 perm/sec)   p_kst 2.810502e-04   p_cons 6.056210e-01   p_joint 2.810502e-04

Joint ci ratio: 1.116204e-01	ci left: 2.651860e-04	ci right 2.967549e-04	k: 1232	n:4390000
Cons ci ratio: 1.509763e-03	ci left: 6.051652e-01	ci right 6.060798e-01	k: 2658683	n:4390000
KS ci ratio: 1.116204e-01	ci left: 2.651860e-04	ci right 2.967549e-04	k: 1232	n:4390000
SORBS1   4390000 perm   7784 sec   (564 perm/sec)   p_kst 2.806378e-04   p_cons 6.056226e-01   p_joint 2.806378e-04

Joint ci ratio: 1.115300e-01	ci left: 2.650251e-04	ci right 2.965477e-04	k: 1234	n:4400000
Cons ci ratio: 1.508040e-03	ci left: 6.051677e-01	ci right 6.060812e-01	k: 2664748	n:4400000
KS ci ratio: 1.115300e-01	ci left: 2.650251e-04	ci right 2.965477e-04	k: 1234	n:4400000
SORBS1   4400000 perm   7818 sec   (563 perm/sec)   p_kst 2.804545e-04   p_cons 6.056245e-01   p_joint 2.804545e-04

Joint ci ratio: 1.113049e-01	ci left: 2.655264e-04	ci right 2.970406e-04	k: 1239	n:4410000
Cons ci ratio: 1.506345e-03	ci left: 6.051632e-01	ci right 6.060757e-01	k: 2670782	n:4410000
KS ci ratio: 1.113049e-01	ci left: 2.655264e-04	ci right 2.970406e-04	k: 1239	n:4410000
SORBS1   4410000 perm   7851 sec   (562 perm/sec)   p_kst 2.809524e-04   p_cons 6.056195e-01   p_joint 2.809524e-04

Joint ci ratio: 1.112152e-01	ci left: 2.653655e-04	ci right 2.968337e-04	k: 1241	n:4420000
Cons ci ratio: 1.504595e-03	ci left: 6.051781e-01	ci right 6.060896e-01	k: 2676902	n:4420000
KS ci ratio: 1.112152e-01	ci left: 2.653655e-04	ci right 2.968337e-04	k: 1241	n:4420000
SORBS1   4420000 perm   7884 sec   (561 perm/sec)   p_kst 2.807692e-04   p_cons 6.056339e-01   p_joint 2.807692e-04

Joint ci ratio: 1.109920e-01	ci left: 2.658638e-04	ci right 2.973236e-04	k: 1246	n:4430000
Cons ci ratio: 1.502914e-03	ci left: 6.051727e-01	ci right 6.060831e-01	k: 2682932	n:4430000
KS ci ratio: 1.109920e-01	ci left: 2.658638e-04	ci right 2.973236e-04	k: 1246	n:4430000
SORBS1   4430000 perm   7919 sec   (559 perm/sec)   p_kst 2.812641e-04   p_cons 6.056280e-01   p_joint 2.812641e-04

Joint ci ratio: 1.109475e-01	ci left: 2.654840e-04	ci right 2.968854e-04	k: 1247	n:4440000
Cons ci ratio: 1.501249e-03	ci left: 6.051642e-01	ci right 6.060735e-01	k: 2688948	n:4440000
KS ci ratio: 1.109475e-01	ci left: 2.654840e-04	ci right 2.968854e-04	k: 1247	n:4440000
SORBS1   4440000 perm   7952 sec   (558 perm/sec)   p_kst 2.808559e-04   p_cons 6.056189e-01   p_joint 2.808559e-04

Joint ci ratio: 1.109031e-01	ci left: 2.651059e-04	ci right 2.964492e-04	k: 1248	n:4450000
Cons ci ratio: 1.499582e-03	ci left: 6.051581e-01	ci right 6.060665e-01	k: 2694975	n:4450000
KS ci ratio: 1.109031e-01	ci left: 2.651059e-04	ci right 2.964492e-04	k: 1248	n:4450000
SORBS1   4450000 perm   7986 sec   (557 perm/sec)   p_kst 2.804494e-04   p_cons 6.056124e-01   p_joint 2.804494e-04

Joint ci ratio: 1.107260e-01	ci left: 2.653835e-04	ci right 2.967063e-04	k: 1252	n:4460000
Cons ci ratio: 1.497914e-03	ci left: 6.051541e-01	ci right 6.060615e-01	k: 2701011	n:4460000
KS ci ratio: 1.107260e-01	ci left: 2.653835e-04	ci right 2.967063e-04	k: 1252	n:4460000
SORBS1   4460000 perm   8020 sec   (556 perm/sec)   p_kst 2.807175e-04   p_cons 6.056078e-01   p_joint 2.807175e-04

Joint ci ratio: 1.106377e-01	ci left: 2.652248e-04	ci right 2.965023e-04	k: 1254	n:4470000
Cons ci ratio: 1.496266e-03	ci left: 6.051454e-01	ci right 6.060518e-01	k: 2707026	n:4470000
KS ci ratio: 1.106377e-01	ci left: 2.652248e-04	ci right 2.965023e-04	k: 1254	n:4470000
SORBS1   4470000 perm   8054 sec   (555 perm/sec)   p_kst 2.805369e-04   p_cons 6.055987e-01   p_joint 2.805369e-04

Joint ci ratio: 1.105937e-01	ci left: 2.648498e-04	ci right 2.960699e-04	k: 1255	n:4480000
Cons ci ratio: 1.494563e-03	ci left: 6.051562e-01	ci right 6.060615e-01	k: 2713128	n:4480000
KS ci ratio: 1.105937e-01	ci left: 2.648498e-04	ci right 2.960699e-04	k: 1255	n:4480000
SORBS1   4480000 perm   8088 sec   (554 perm/sec)   p_kst 2.801339e-04   p_cons 6.056089e-01   p_joint 2.801339e-04

Joint ci ratio: 1.104180e-01	ci left: 2.651262e-04	ci right 2.963259e-04	k: 1259	n:4490000
Cons ci ratio: 1.492882e-03	ci left: 6.051618e-01	ci right 6.060661e-01	k: 2719207	n:4490000
KS ci ratio: 1.104180e-01	ci left: 2.651262e-04	ci right 2.963259e-04	k: 1259	n:4490000
SORBS1   4490000 perm   8122 sec   (553 perm/sec)   p_kst 2.804009e-04   p_cons 6.056140e-01   p_joint 2.804009e-04

Joint ci ratio: 1.103305e-01	ci left: 2.649692e-04	ci right 2.961242e-04	k: 1261	n:4500000
Cons ci ratio: 1.491214e-03	ci left: 6.051652e-01	ci right 6.060685e-01	k: 2725276	n:4500000
KS ci ratio: 1.103305e-01	ci left: 2.649692e-04	ci right 2.961242e-04	k: 1261	n:4500000
SORBS1   4500000 perm   8156 sec   (552 perm/sec)   p_kst 2.802222e-04   p_cons 6.056169e-01   p_joint 2.802222e-04

Joint ci ratio: 1.101996e-01	ci left: 2.650285e-04	ci right 2.961511e-04	k: 1264	n:4510000
Cons ci ratio: 1.489567e-03	ci left: 6.051634e-01	ci right 6.060657e-01	k: 2731322	n:4510000
KS ci ratio: 1.101996e-01	ci left: 2.650285e-04	ci right 2.961511e-04	k: 1264	n:4510000
SORBS1   4510000 perm   8190 sec   (551 perm/sec)   p_kst 2.802661e-04   p_cons 6.056146e-01   p_joint 2.802661e-04

Joint ci ratio: 1.101996e-01	ci left: 2.644422e-04	ci right 2.954959e-04	k: 1264	n:4520000
Cons ci ratio: 1.487938e-03	ci left: 6.051575e-01	ci right 6.060588e-01	k: 2737349	n:4520000
KS ci ratio: 1.101996e-01	ci left: 2.644422e-04	ci right 2.954959e-04	k: 1264	n:4520000
SORBS1   4520000 perm   8225 sec   (550 perm/sec)   p_kst 2.796460e-04   p_cons 6.056082e-01   p_joint 2.796460e-04

Joint ci ratio: 1.101126e-01	ci left: 2.642878e-04	ci right 2.952972e-04	k: 1266	n:4530000
Cons ci ratio: 1.486276e-03	ci left: 6.051641e-01	ci right 6.060644e-01	k: 2743433	n:4530000
KS ci ratio: 1.101126e-01	ci left: 2.642878e-04	ci right 2.952972e-04	k: 1266	n:4530000
SORBS1   4530000 perm   8260 sec   (548 perm/sec)   p_kst 2.794702e-04   p_cons 6.056143e-01   p_joint 2.794702e-04

Joint ci ratio: 1.099825e-01	ci left: 2.643482e-04	ci right 2.953258e-04	k: 1269	n:4540000
Cons ci ratio: 1.484626e-03	ci left: 6.051683e-01	ci right 6.060677e-01	k: 2749506	n:4540000
KS ci ratio: 1.099825e-01	ci left: 2.643482e-04	ci right 2.953258e-04	k: 1269	n:4540000
SORBS1   4540000 perm   8294 sec   (547 perm/sec)   p_kst 2.795154e-04   p_cons 6.056181e-01   p_joint 2.795154e-04

Joint ci ratio: 1.098960e-01	ci left: 2.641947e-04	ci right 2.951284e-04	k: 1271	n:4550000
Cons ci ratio: 1.483001e-03	ci left: 6.051666e-01	ci right 6.060649e-01	k: 2755552	n:4550000
KS ci ratio: 1.098960e-01	ci left: 2.641947e-04	ci right 2.951284e-04	k: 1271	n:4550000
SORBS1   4550000 perm   8329 sec   (546 perm/sec)   p_kst 2.793407e-04   p_cons 6.056158e-01   p_joint 2.793407e-04

Joint ci ratio: 1.097236e-01	ci left: 2.644685e-04	ci right 2.953824e-04	k: 1275	n:4560000
Cons ci ratio: 1.481362e-03	ci left: 6.051708e-01	ci right 6.060681e-01	k: 2761625	n:4560000
KS ci ratio: 1.097236e-01	ci left: 2.644685e-04	ci right 2.953824e-04	k: 1275	n:4560000
SORBS1   4560000 perm   8363 sec   (545 perm/sec)   p_kst 2.796053e-04   p_cons 6.056195e-01   p_joint 2.796053e-04

Joint ci ratio: 1.095948e-01	ci left: 2.645282e-04	ci right 2.954105e-04	k: 1278	n:4570000
Cons ci ratio: 1.479747e-03	ci left: 6.051693e-01	ci right 6.060656e-01	k: 2767672	n:4570000
KS ci ratio: 1.095948e-01	ci left: 2.645282e-04	ci right 2.954105e-04	k: 1278	n:4570000
SORBS1   4570000 perm   8398 sec   (544 perm/sec)   p_kst 2.796499e-04   p_cons 6.056175e-01   p_joint 2.796499e-04

Joint ci ratio: 1.094665e-01	ci left: 2.645877e-04	ci right 2.954385e-04	k: 1281	n:4580000
Cons ci ratio: 1.478169e-03	ci left: 6.051573e-01	ci right 6.060526e-01	k: 2773671	n:4580000
KS ci ratio: 1.094665e-01	ci left: 2.645877e-04	ci right 2.954385e-04	k: 1281	n:4580000
SORBS1   4580000 perm   8433 sec   (543 perm/sec)   p_kst 2.796943e-04   p_cons 6.056050e-01   p_joint 2.796943e-04

Joint ci ratio: 1.092112e-01	ci left: 2.652827e-04	ci right 2.961377e-04	k: 1287	n:4590000
Cons ci ratio: 1.476545e-03	ci left: 6.051621e-01	ci right 6.060565e-01	k: 2779747	n:4590000
KS ci ratio: 1.092112e-01	ci left: 2.652827e-04	ci right 2.961377e-04	k: 1287	n:4590000
SORBS1   4590000 perm   8468 sec   (542 perm/sec)   p_kst 2.803922e-04   p_cons 6.056094e-01   p_joint 2.803922e-04

Joint ci ratio: 1.091265e-01	ci left: 2.651289e-04	ci right 2.959406e-04	k: 1289	n:4600000
Cons ci ratio: 1.474949e-03	ci left: 6.051593e-01	ci right 6.060527e-01	k: 2785788	n:4600000
KS ci ratio: 1.091265e-01	ci left: 2.651289e-04	ci right 2.959406e-04	k: 1289	n:4600000
SORBS1   4600000 perm   8504 sec   (541 perm/sec)   p_kst 2.802174e-04   p_cons 6.056061e-01   p_joint 2.802174e-04

Joint ci ratio: 1.090420e-01	ci left: 2.649758e-04	ci right 2.957443e-04	k: 1291	n:4610000
Cons ci ratio: 1.473341e-03	ci left: 6.051624e-01	ci right 6.060548e-01	k: 2791856	n:4610000
KS ci ratio: 1.090420e-01	ci left: 2.649758e-04	ci right 2.957443e-04	k: 1291	n:4610000
SORBS1   4610000 perm   8539 sec   (540 perm/sec)   p_kst 2.800434e-04   p_cons 6.056087e-01   p_joint 2.800434e-04

Joint ci ratio: 1.089577e-01	ci left: 2.648234e-04	ci right 2.955489e-04	k: 1293	n:4620000
Cons ci ratio: 1.471773e-03	ci left: 6.051537e-01	ci right 6.060453e-01	k: 2797870	n:4620000
KS ci ratio: 1.089577e-01	ci left: 2.648234e-04	ci right 2.955489e-04	k: 1293	n:4620000
SORBS1   4620000 perm   8575 sec   (539 perm/sec)   p_kst 2.798701e-04   p_cons 6.055996e-01   p_joint 2.798701e-04

Joint ci ratio: 1.088736e-01	ci left: 2.646716e-04	ci right 2.953543e-04	k: 1295	n:4630000
Cons ci ratio: 1.470176e-03	ci left: 6.051564e-01	ci right 6.060469e-01	k: 2803936	n:4630000
KS ci ratio: 1.088736e-01	ci left: 2.646716e-04	ci right 2.953543e-04	k: 1295	n:4630000
SORBS1   4630000 perm   8609 sec   (538 perm/sec)   p_kst 2.796976e-04   p_cons 6.056017e-01   p_joint 2.796976e-04

Joint ci ratio: 1.086642e-01	ci left: 2.651495e-04	ci right 2.958246e-04	k: 1300	n:4640000
Cons ci ratio: 1.468528e-03	ci left: 6.051776e-01	ci right 6.060671e-01	k: 2810088	n:4640000
KS ci ratio: 1.086642e-01	ci left: 2.651495e-04	ci right 2.958246e-04	k: 1300	n:4640000
SORBS1   4640000 perm   8645 sec   (537 perm/sec)   p_kst 2.801724e-04   p_cons 6.056224e-01   p_joint 2.801724e-04

Joint ci ratio: 1.085808e-01	ci left: 2.649977e-04	ci right 2.956302e-04	k: 1302	n:4650000
Cons ci ratio: 1.466936e-03	ci left: 6.051819e-01	ci right 6.060705e-01	k: 2816162	n:4650000
KS ci ratio: 1.085808e-01	ci left: 2.649977e-04	ci right 2.956302e-04	k: 1302	n:4650000
SORBS1   4650000 perm   8681 sec   (536 perm/sec)   p_kst 2.800000e-04   p_cons 6.056262e-01   p_joint 2.800000e-04

Joint ci ratio: 1.084560e-01	ci left: 2.650553e-04	ci right 2.956571e-04	k: 1305	n:4660000
Cons ci ratio: 1.465389e-03	ci left: 6.051733e-01	ci right 6.060609e-01	k: 2822176	n:4660000
KS ci ratio: 1.084560e-01	ci left: 2.650553e-04	ci right 2.956571e-04	k: 1305	n:4660000
SORBS1   4660000 perm   8716 sec   (535 perm/sec)   p_kst 2.800429e-04   p_cons 6.056172e-01   p_joint 2.800429e-04

Joint ci ratio: 1.084145e-01	ci left: 2.646961e-04	ci right 2.952439e-04	k: 1306	n:4670000
Cons ci ratio: 1.463836e-03	ci left: 6.051684e-01	ci right 6.060551e-01	k: 2828207	n:4670000
KS ci ratio: 1.084145e-01	ci left: 2.646961e-04	ci right 2.952439e-04	k: 1306	n:4670000
SORBS1   4670000 perm   8752 sec   (534 perm/sec)   p_kst 2.796574e-04   p_cons 6.056118e-01   p_joint 2.796574e-04

Joint ci ratio: 1.083731e-01	ci left: 2.643383e-04	ci right 2.948325e-04	k: 1307	n:4680000
Cons ci ratio: 1.462247e-03	ci left: 6.051767e-01	ci right 6.060625e-01	k: 2834300	n:4680000
KS ci ratio: 1.083731e-01	ci left: 2.643383e-04	ci right 2.948325e-04	k: 1307	n:4680000
SORBS1   4680000 perm   8787 sec   (533 perm/sec)   p_kst 2.792735e-04   p_cons 6.056197e-01   p_joint 2.792735e-04

Joint ci ratio: 1.082077e-01	ci left: 2.646045e-04	ci right 2.950799e-04	k: 1311	n:4690000
Cons ci ratio: 1.460648e-03	ci left: 6.051899e-01	ci right 6.060748e-01	k: 2840416	n:4690000
KS ci ratio: 1.082077e-01	ci left: 2.646045e-04	ci right 2.950799e-04	k: 1311	n:4690000
SORBS1   4690000 perm   8823 sec   (532 perm/sec)   p_kst 2.795309e-04   p_cons 6.056324e-01   p_joint 2.795309e-04

Joint ci ratio: 1.081666e-01	ci left: 2.642485e-04	ci right 2.946705e-04	k: 1312	n:4700000
Cons ci ratio: 1.459105e-03	ci left: 6.051865e-01	ci right 6.060704e-01	k: 2846454	n:4700000
KS ci ratio: 1.081666e-01	ci left: 2.642485e-04	ci right 2.946705e-04	k: 1312	n:4700000
SORBS1   4700000 perm   8858 sec   (531 perm/sec)   p_kst 2.791489e-04   p_cons 6.056285e-01   p_joint 2.791489e-04

Joint ci ratio: 1.079612e-01	ci left: 2.647204e-04	ci right 2.951352e-04	k: 1317	n:4710000
Cons ci ratio: 1.457563e-03	ci left: 6.051846e-01	ci right 6.060675e-01	k: 2852499	n:4710000
KS ci ratio: 1.079612e-01	ci left: 2.647204e-04	ci right 2.951352e-04	k: 1317	n:4710000
SORBS1   4710000 perm   8894 sec   (530 perm/sec)   p_kst 2.796178e-04   p_cons 6.056261e-01   p_joint 2.796178e-04

Joint ci ratio: 1.077977e-01	ci left: 2.649841e-04	ci right 2.953802e-04	k: 1321	n:4720000
Cons ci ratio: 1.456083e-03	ci left: 6.051638e-01	ci right 6.060458e-01	k: 2858455	n:4720000
KS ci ratio: 1.077977e-01	ci left: 2.649841e-04	ci right 2.953802e-04	k: 1321	n:4720000
SORBS1   4720000 perm   8930 sec   (529 perm/sec)   p_kst 2.798729e-04   p_cons 6.056049e-01   p_joint 2.798729e-04

Joint ci ratio: 1.076350e-01	ci left: 2.652468e-04	ci right 2.956241e-04	k: 1325	n:4730000
Cons ci ratio: 1.454530e-03	ci left: 6.051685e-01	ci right 6.060496e-01	k: 2864531	n:4730000
KS ci ratio: 1.076350e-01	ci left: 2.652468e-04	ci right 2.956241e-04	k: 1325	n:4730000
SORBS1   4730000 perm   8966 sec   (528 perm/sec)   p_kst 2.801268e-04   p_cons 6.056091e-01   p_joint 2.801268e-04

Joint ci ratio: 1.075539e-01	ci left: 2.650978e-04	ci right 2.954338e-04	k: 1327	n:4740000
Cons ci ratio: 1.452920e-03	ci left: 6.051936e-01	ci right 6.060738e-01	k: 2870704	n:4740000
KS ci ratio: 1.075539e-01	ci left: 2.650978e-04	ci right 2.954338e-04	k: 1327	n:4740000
SORBS1   4740000 perm   9002 sec   (527 perm/sec)   p_kst 2.799578e-04   p_cons 6.056338e-01   p_joint 2.799578e-04

Joint ci ratio: 1.075134e-01	ci left: 2.647445e-04	ci right 2.950280e-04	k: 1328	n:4750000
Cons ci ratio: 1.451380e-03	ci left: 6.051972e-01	ci right 6.060764e-01	k: 2876775	n:4750000
KS ci ratio: 1.075134e-01	ci left: 2.647445e-04	ci right 2.950280e-04	k: 1328	n:4750000
SORBS1   4750000 perm   9038 sec   (526 perm/sec)   p_kst 2.795789e-04   p_cons 6.056368e-01   p_joint 2.795789e-04

Joint ci ratio: 1.074326e-01	ci left: 2.645972e-04	ci right 2.948396e-04	k: 1330	n:4760000
Cons ci ratio: 1.449838e-03	ci left: 6.052030e-01	ci right 6.060813e-01	k: 2882857	n:4760000
KS ci ratio: 1.074326e-01	ci left: 2.645972e-04	ci right 2.948396e-04	k: 1330	n:4760000
SORBS1   4760000 perm   9074 sec   (525 perm/sec)   p_kst 2.794118e-04   p_cons 6.056422e-01   p_joint 2.794118e-04

Joint ci ratio: 1.073923e-01	ci left: 2.642465e-04	ci right 2.944368e-04	k: 1331	n:4770000
Cons ci ratio: 1.448327e-03	ci left: 6.052005e-01	ci right 6.060778e-01	k: 2888899	n:4770000
KS ci ratio: 1.073923e-01	ci left: 2.642465e-04	ci right 2.944368e-04	k: 1331	n:4770000
SORBS1   4770000 perm   9111 sec   (524 perm/sec)   p_kst 2.790356e-04   p_cons 6.056392e-01   p_joint 2.790356e-04

Joint ci ratio: 1.072716e-01	ci left: 2.643045e-04	ci right 2.944653e-04	k: 1334	n:4780000
Cons ci ratio: 1.446834e-03	ci left: 6.051935e-01	ci right 6.060700e-01	k: 2894920	n:4780000
KS ci ratio: 1.072716e-01	ci left: 2.643045e-04	ci right 2.944653e-04	k: 1334	n:4780000
SORBS1   4780000 perm   9147 sec   (523 perm/sec)   p_kst 2.790795e-04   p_cons 6.056318e-01   p_joint 2.790795e-04

Joint ci ratio: 1.071513e-01	ci left: 2.643622e-04	ci right 2.944936e-04	k: 1337	n:4790000
Cons ci ratio: 1.445367e-03	ci left: 6.051793e-01	ci right 6.060548e-01	k: 2900906	n:4790000
KS ci ratio: 1.071513e-01	ci left: 2.643622e-04	ci right 2.944936e-04	k: 1337	n:4790000
SORBS1   4790000 perm   9184 sec   (522 perm/sec)   p_kst 2.791232e-04   p_cons 6.056171e-01   p_joint 2.791232e-04

Joint ci ratio: 1.070313e-01	ci left: 2.644197e-04	ci right 2.945218e-04	k: 1340	n:4800000
Cons ci ratio: 1.443894e-03	ci left: 6.051689e-01	ci right 6.060435e-01	k: 2906910	n:4800000
KS ci ratio: 1.070313e-01	ci left: 2.644197e-04	ci right 2.945218e-04	k: 1340	n:4800000
SORBS1   4800000 perm   9220 sec   (521 perm/sec)   p_kst 2.791667e-04   p_cons 6.056063e-01   p_joint 2.791667e-04

Joint ci ratio: 1.069915e-01	ci left: 2.640723e-04	ci right 2.941230e-04	k: 1341	n:4810000
Cons ci ratio: 1.442417e-03	ci left: 6.051610e-01	ci right 6.060347e-01	k: 2912926	n:4810000
KS ci ratio: 1.069915e-01	ci left: 2.640723e-04	ci right 2.941230e-04	k: 1341	n:4810000
SORBS1   4810000 perm   9257 sec   (520 perm/sec)   p_kst 2.787942e-04   p_cons 6.055979e-01   p_joint 2.787942e-04

Joint ci ratio: 1.069517e-01	ci left: 2.637264e-04	ci right 2.937258e-04	k: 1342	n:4820000
Cons ci ratio: 1.440887e-03	ci left: 6.051722e-01	ci right 6.060451e-01	k: 2919034	n:4820000
KS ci ratio: 1.069517e-01	ci left: 2.637264e-04	ci right 2.937258e-04	k: 1342	n:4820000
SORBS1   4820000 perm   9295 sec   (519 perm/sec)   p_kst 2.784232e-04   p_cons 6.056087e-01   p_joint 2.784232e-04

Joint ci ratio: 1.069517e-01	ci left: 2.631803e-04	ci right 2.931177e-04	k: 1342	n:4830000
Cons ci ratio: 1.439352e-03	ci left: 6.051870e-01	ci right 6.060589e-01	k: 2925159	n:4830000
KS ci ratio: 1.069517e-01	ci left: 2.631803e-04	ci right 2.931177e-04	k: 1342	n:4830000
SORBS1   4830000 perm   9331 sec   (518 perm/sec)   p_kst 2.778468e-04   p_cons 6.056230e-01   p_joint 2.778468e-04

Joint ci ratio: 1.068721e-01	ci left: 2.630387e-04	ci right 2.929363e-04	k: 1344	n:4840000
Cons ci ratio: 1.437771e-03	ci left: 6.052184e-01	ci right 6.060894e-01	k: 2931365	n:4840000
KS ci ratio: 1.068721e-01	ci left: 2.630387e-04	ci right 2.929363e-04	k: 1344	n:4840000
SORBS1   4840000 perm   9367 sec   (517 perm/sec)   p_kst 2.776860e-04   p_cons 6.056539e-01   p_joint 2.776860e-04

Joint ci ratio: 1.067928e-01	ci left: 2.628977e-04	ci right 2.927557e-04	k: 1346	n:4850000
Cons ci ratio: 1.436173e-03	ci left: 6.052573e-01	ci right 6.061273e-01	k: 2937608	n:4850000
KS ci ratio: 1.067928e-01	ci left: 2.628977e-04	ci right 2.927557e-04	k: 1346	n:4850000
SORBS1   4850000 perm   9404 sec   (516 perm/sec)   p_kst 2.775258e-04   p_cons 6.056924e-01   p_joint 2.775258e-04

Joint ci ratio: 1.065951e-01	ci left: 2.633582e-04	ci right 2.932096e-04	k: 1351	n:4860000
Cons ci ratio: 1.434703e-03	ci left: 6.052549e-01	ci right 6.061240e-01	k: 2943651	n:4860000
KS ci ratio: 1.065951e-01	ci left: 2.633582e-04	ci right 2.932096e-04	k: 1351	n:4860000
SORBS1   4860000 perm   9442 sec   (515 perm/sec)   p_kst 2.779835e-04   p_cons 6.056895e-01   p_joint 2.779835e-04

Joint ci ratio: 1.064378e-01	ci left: 2.636169e-04	ci right 2.934507e-04	k: 1355	n:4870000
Cons ci ratio: 1.433280e-03	ci left: 6.052385e-01	ci right 6.061068e-01	k: 2949626	n:4870000
KS ci ratio: 1.064378e-01	ci left: 2.636169e-04	ci right 2.934507e-04	k: 1355	n:4870000
SORBS1   4870000 perm   9478 sec   (514 perm/sec)   p_kst 2.782341e-04   p_cons 6.056727e-01   p_joint 2.782341e-04

Joint ci ratio: 1.063594e-01	ci left: 2.634756e-04	ci right 2.932701e-04	k: 1357	n:4880000
Cons ci ratio: 1.431808e-03	ci left: 6.052398e-01	ci right 6.061072e-01	k: 2955687	n:4880000
KS ci ratio: 1.063594e-01	ci left: 2.634756e-04	ci right 2.932701e-04	k: 1357	n:4880000
SORBS1   4880000 perm   9516 sec   (513 perm/sec)   p_kst 2.780738e-04   p_cons 6.056736e-01   p_joint 2.780738e-04

Joint ci ratio: 1.062030e-01	ci left: 2.637330e-04	ci right 2.935101e-04	k: 1361	n:4890000
Cons ci ratio: 1.430316e-03	ci left: 6.052493e-01	ci right 6.061158e-01	k: 2961788	n:4890000
KS ci ratio: 1.062030e-01	ci left: 2.637330e-04	ci right 2.935101e-04	k: 1361	n:4890000
SORBS1   4890000 perm   9553 sec   (512 perm/sec)   p_kst 2.783231e-04   p_cons 6.056826e-01   p_joint 2.783231e-04

Joint ci ratio: 1.061641e-01	ci left: 2.633935e-04	ci right 2.931206e-04	k: 1362	n:4900000
Cons ci ratio: 1.428866e-03	ci left: 6.052461e-01	ci right 6.061117e-01	k: 2967827	n:4900000
KS ci ratio: 1.061641e-01	ci left: 2.633935e-04	ci right 2.931206e-04	k: 1362	n:4900000
SORBS1   4900000 perm   9590 sec   (511 perm/sec)   p_kst 2.779592e-04   p_cons 6.056790e-01   p_joint 2.779592e-04

Joint ci ratio: 1.059699e-01	ci left: 2.638483e-04	ci right 2.935690e-04	k: 1367	n:4910000
Cons ci ratio: 1.427367e-03	ci left: 6.052611e-01	ci right 6.061258e-01	k: 2973955	n:4910000
KS ci ratio: 1.059699e-01	ci left: 2.638483e-04	ci right 2.935690e-04	k: 1367	n:4910000
SORBS1   4910000 perm   9628 sec   (510 perm/sec)   p_kst 2.784114e-04   p_cons 6.056935e-01   p_joint 2.784114e-04

Joint ci ratio: 1.059312e-01	ci left: 2.635099e-04	ci right 2.931809e-04	k: 1368	n:4920000
Cons ci ratio: 1.425916e-03	ci left: 6.052615e-01	ci right 6.061254e-01	k: 2980012	n:4920000
KS ci ratio: 1.059312e-01	ci left: 2.635099e-04	ci right 2.931809e-04	k: 1368	n:4920000
SORBS1   4920000 perm   9665 sec   (509 perm/sec)   p_kst 2.780488e-04   p_cons 6.056935e-01   p_joint 2.780488e-04

Joint ci ratio: 1.058153e-01	ci left: 2.635678e-04	ci right 2.932109e-04	k: 1371	n:4930000
Cons ci ratio: 1.424468e-03	ci left: 6.052624e-01	ci right 6.061253e-01	k: 2986071	n:4930000
KS ci ratio: 1.058153e-01	ci left: 2.635678e-04	ci right 2.932109e-04	k: 1371	n:4930000
SORBS1   4930000 perm   9702 sec   (508 perm/sec)   p_kst 2.780933e-04   p_cons 6.056939e-01   p_joint 2.780933e-04

Joint ci ratio: 1.056998e-01	ci left: 2.636255e-04	ci right 2.932407e-04	k: 1374	n:4940000
Cons ci ratio: 1.423027e-03	ci left: 6.052624e-01	ci right 6.061245e-01	k: 2992126	n:4940000
KS ci ratio: 1.056998e-01	ci left: 2.636255e-04	ci right 2.932407e-04	k: 1374	n:4940000
SORBS1   4940000 perm   9740 sec   (507 perm/sec)   p_kst 2.781377e-04   p_cons 6.056935e-01   p_joint 2.781377e-04

Joint ci ratio: 1.055847e-01	ci left: 2.636830e-04	ci right 2.932703e-04	k: 1377	n:4950000
Cons ci ratio: 1.421538e-03	ci left: 6.052798e-01	ci right 6.061411e-01	k: 2998267	n:4950000
KS ci ratio: 1.055847e-01	ci left: 2.636830e-04	ci right 2.932703e-04	k: 1377	n:4950000
SORBS1   4950000 perm   9778 sec   (506 perm/sec)   p_kst 2.781818e-04   p_cons 6.057105e-01   p_joint 2.781818e-04

Joint ci ratio: 1.053936e-01	ci left: 2.641328e-04	ci right 2.937137e-04	k: 1382	n:4960000
Cons ci ratio: 1.420086e-03	ci left: 6.052863e-01	ci right 6.061466e-01	k: 3004354	n:4960000
KS ci ratio: 1.053936e-01	ci left: 2.641328e-04	ci right 2.937137e-04	k: 1382	n:4960000
SORBS1   4960000 perm   9815 sec   (505 perm/sec)   p_kst 2.786290e-04   p_cons 6.057165e-01   p_joint 2.786290e-04

Joint ci ratio: 1.053556e-01	ci left: 2.637973e-04	ci right 2.933293e-04	k: 1383	n:4970000
Cons ci ratio: 1.418687e-03	ci left: 6.052766e-01	ci right 6.061361e-01	k: 3010361	n:4970000
KS ci ratio: 1.053556e-01	ci left: 2.637973e-04	ci right 2.933293e-04	k: 1383	n:4970000
SORBS1   4970000 perm   9853 sec   (504 perm/sec)   p_kst 2.782696e-04   p_cons 6.057064e-01   p_joint 2.782696e-04

Joint ci ratio: 1.052416e-01	ci left: 2.638541e-04	ci right 2.933585e-04	k: 1386	n:4980000
Cons ci ratio: 1.417256e-03	ci left: 6.052791e-01	ci right 6.061377e-01	k: 3016428	n:4980000
KS ci ratio: 1.052416e-01	ci left: 2.638541e-04	ci right 2.933585e-04	k: 1386	n:4980000
SORBS1   4980000 perm   9891 sec   (503 perm/sec)   p_kst 2.783133e-04   p_cons 6.057084e-01   p_joint 2.783133e-04

Joint ci ratio: 1.051658e-01	ci left: 2.637156e-04	ci right 2.931820e-04	k: 1388	n:4990000
Cons ci ratio: 1.415831e-03	ci left: 6.052807e-01	ci right 6.061384e-01	k: 3022491	n:4990000
KS ci ratio: 1.051658e-01	ci left: 2.637156e-04	ci right 2.931820e-04	k: 1388	n:4990000
SORBS1   4990000 perm   9929 sec   (503 perm/sec)   p_kst 2.781563e-04   p_cons 6.057096e-01   p_joint 2.781563e-04

Joint ci ratio: 1.049017e-01	ci left: 2.645514e-04	ci right 2.940323e-04	k: 1395	n:5000000
Cons ci ratio: 1.414465e-03	ci left: 6.052643e-01	ci right 6.061212e-01	k: 3028464	n:5000000
KS ci ratio: 1.049017e-01	ci left: 2.645514e-04	ci right 2.940323e-04	k: 1395	n:5000000
SORBS1   5000000 perm   9967 sec   (502 perm/sec)   p_kst 2.790000e-04   p_cons 6.056928e-01   p_joint 2.790000e-04

Outputting figure to mutsig2_images.part000000000164/SORBS1.2_4200_5000000_0.000279_0.60569_0.000279.png
                gene_name: SORBS1
               theta_stop: 0.10 
                    nperm: 5000000 
                     p_ks: 0.00028 
        ci_ks_bounds_left: 0.00026 
       ci_ks_bounds_right: 0.00029 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.00028 
     ci_joint_bounds_left: 0.00026 
    ci_joint_bounds_right: 0.00029 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000164
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 164 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1538>
Subject: Job 9878225: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1538>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000165> was used as the working directory.
Started at Fri Oct  5 22:58:09 2012
Results reported at Fri Oct  5 23:00:38 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000165.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000165.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 165  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000165.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    180.15 sec.
    Max Memory :      2269 MB
    Max Swap   :      4747 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
165
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 165
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 165: processing genes 14871 - 14961
Calculating significance of each gene.
Using projection method.
14871	SPAG11A	1
14872	SPAG11B	1
14873	SPAG16	1.709732e-03
14874	SPAG17	4.097050e-01
14875	SPAG4	1
14876	SPAG5	1
14877	SPAG6	1.071354e-01
14878	SPAG7	1
14879	SPAG8	1.375046e-01
14880	SPAG9	1
14881	SPAM1	1
14882	SPANXC	1
14883	SPANXD	1
14884	SPANXE	1
14885	SPANXN1	1
14886	SPANXN2	1
14887	SPANXN3	1
14888	SPANXN5	1
14889	SPARC	1
14890	SPARCL1	1
14891	SPAST	4.249986e-02
14892	SPATA1	1.753602e-02
14893	SPATA12	1
14894	SPATA13	1
14895	SPATA16	1
14896	SPATA17	1
14897	SPATA18	1
In gene SPATA19 the following bins exceed PROBCAP:
    PRAD-CH-5772	categ 6	N = 528     n = 1	mu =   3.94e-07
14898	SPATA19	3.015354e-02
14899	SPATA2	1
14900	SPATA20	1
14901	SPATA21	1
14902	SPATA22	1
14903	SPATA2L	1
14904	SPATA4	1
14905	SPATA5	1
14906	SPATA5L1	1.122048e-01
14907	SPATA6	1
14908	SPATA7	1
14909	SPATA8	1
14910	SPATA9	1
14911	SPATC1	1
14912	SPATS1	1
14913	SPATS2	6.855311e-02
14914	SPATS2L	1
14915	SPC24	2.360373e-02
14916	SPC25	1
14917	SPCS1	1
14918	SPCS2	1
14919	SPCS3	1
14920	SPDEF	1
14921	SPDYA	1
14922	SPDYC	8.515149e-02
14923	SPDYE1	1
14924	SPDYE3	1
14925	SPDYE4	1
14926	SPDYE5	1
14927	SPDYE6	6.837657e-02
14928	SPEF1	1
14929	SPEF2	1
14930	SPEG	1
14931	SPEM1	1
14932	SPEN	1.880968e-01
14933	SPERT	1
14934	SPESP1	1
14935	SPG11	1
14936	SPG20	5.986981e-02
14937	SPG21	1
14938	SPG7	1
14939	SPHAR	1
14940	SPHK1	1
14941	SPHK2	1
14942	SPHKAP	8.135568e-03
14943	SPI1	1
14944	SPIB	1
14945	SPIC	7.905498e-03
14946	SPIN1	1
14947	SPIN2A	1
14948	SPIN2B	1
14949	SPIN3	1
14950	SPIN4	1
14951	SPINK1	1
14952	SPINK13	1
14953	SPINK14	1
14954	SPINK2	1
14955	SPINK4	1
14956	SPINK5	1
14957	SPINK6	1
14958	SPINK7	1
14959	SPINK8	1
14960	SPINK9	1
14961	SPINLW1	1
Done

Running MutSig 2:
Scatter job 165: processing genes 14871 - 14961
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SPHKAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.179695e-02	ci left: 5.934319e-01	ci right 6.127080e-01	k: 6031	n:10000
Cons ci ratio: 5.021042e-02	ci left: 3.690799e-01	ci right 3.881908e-01	k: 3786	n:10000
KS ci ratio: 7.397016e-03	ci left: 9.619446e-01	ci right 9.691809e-01	k: 9657	n:10000
SPHKAP   10000 perm   2 sec   (4210 perm/sec)   p_kst 9.657000e-01   p_cons 3.786000e-01   p_joint 6.031000e-01

Outputting figure to mutsig2_images.part000000000165/SPHKAP.3_5151_10000_0.9657_0.3786_0.6031.png
                gene_name: SPHKAP
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 25 percent done.
SPAG16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.326663e-01	ci left: 2.438298e-02	ci right 3.089610e-02	k: 275	n:10000
Cons ci ratio: 9.952147e-02	ci left: 1.275764e-01	ci right 1.410375e-01	k: 1342	n:10000
KS ci ratio: 1.288571e-01	ci left: 7.921726e-02	ci right 9.022608e-02	k: 846	n:10000
SPAG16   10000 perm   2 sec   (6032 perm/sec)   p_kst 8.460000e-02   p_cons 1.342000e-01   p_joint 2.750000e-02

Joint ci ratio: 2.021709e-01	ci left: 1.658271e-02	ci right 2.035914e-02	k: 368	n:20000
Cons ci ratio: 7.189615e-02	ci left: 1.247282e-01	ci right 1.340798e-01	k: 2587	n:20000
KS ci ratio: 9.039081e-02	ci left: 8.205187e-02	ci right 8.986900e-02	k: 1718	n:20000
SPAG16   20000 perm   4 sec   (5254 perm/sec)   p_kst 8.590000e-02   p_cons 1.293500e-01   p_joint 1.840000e-02

Joint ci ratio: 1.426081e-01	ci left: 2.281229e-02	ci right 2.634727e-02	k: 736	n:30000
Cons ci ratio: 5.905327e-02	ci left: 1.242719e-01	ci right 1.318670e-01	k: 3841	n:30000
KS ci ratio: 7.330004e-02	ci left: 8.383423e-02	ci right 9.024601e-02	k: 2610	n:30000
SPAG16   30000 perm   6 sec   (5008 perm/sec)   p_kst 8.700000e-02   p_cons 1.280333e-01   p_joint 2.453333e-02

Joint ci ratio: 1.299271e-01	ci left: 2.080263e-02	ci right 2.371730e-02	k: 889	n:40000
Cons ci ratio: 5.134120e-02	ci left: 1.239247e-01	ci right 1.304796e-01	k: 5087	n:40000
KS ci ratio: 6.337363e-02	ci left: 8.452665e-02	ci right 9.008343e-02	k: 3491	n:40000
SPAG16   40000 perm   8 sec   (4865 perm/sec)   p_kst 8.727500e-02   p_cons 1.271750e-01   p_joint 2.222500e-02

Joint ci ratio: 1.174309e-01	ci left: 2.051841e-02	ci right 2.309753e-02	k: 1089	n:50000
Cons ci ratio: 4.591278e-02	ci left: 1.243110e-01	ci right 1.301724e-01	k: 6361	n:50000
KS ci ratio: 5.647790e-02	ci left: 8.539262e-02	ci right 9.037535e-02	k: 4393	n:50000
SPAG16   50000 perm   11 sec   (4736 perm/sec)   p_kst 8.786000e-02   p_cons 1.272200e-01   p_joint 2.178000e-02

Joint ci ratio: 8.214389e-02	ci left: 3.506260e-02	ci right 3.808244e-02	k: 2193	n:60000
Cons ci ratio: 4.204638e-02	ci left: 1.238665e-01	ci right 1.292030e-01	k: 7591	n:60000
KS ci ratio: 5.157211e-02	ci left: 8.556365e-02	ci right 9.010964e-02	k: 5269	n:60000
SPAG16   60000 perm   13 sec   (4623 perm/sec)   p_kst 8.781667e-02   p_cons 1.265167e-01   p_joint 3.655000e-02

Outputting figure to mutsig2_images.part000000000165/SPAG16.2_1976_60000_0.087817_0.12652_0.03655.png
                gene_name: SPAG16
               theta_stop: 0.082 
                    nperm: 60000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.090 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.038 

Current progress: 50 percent done.
SPATA5L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.176376e-02	ci left: 5.939338e-01	ci right 6.132058e-01	k: 6036	n:10000
Cons ci ratio: 1.577252e-02	ci left: 8.537584e-01	ci right 8.674308e-01	k: 8607	n:10000
KS ci ratio: 1.699685e-01	ci left: 4.619368e-02	ci right 5.487054e-02	k: 504	n:10000
SPATA5L1   10000 perm   2 sec   (5282 perm/sec)   p_kst 5.040000e-02   p_cons 8.607000e-01   p_joint 6.036000e-01

Joint ci ratio: 3.150390e-02	ci left: 4.294116e-01	ci right 4.432069e-01	k: 8726	n:20000
Cons ci ratio: 1.063745e-02	ci left: 8.669354e-01	ci right 8.762563e-01	k: 17433	n:20000
KS ci ratio: 1.200634e-01	ci left: 4.755432e-02	ci right 5.367717e-02	k: 1011	n:20000
SPATA5L1   20000 perm   4 sec   (4947 perm/sec)   p_kst 5.055000e-02   p_cons 8.716500e-01   p_joint 4.363000e-01

Joint ci ratio: 3.097848e-02	ci left: 3.425749e-01	ci right 3.533879e-01	k: 10439	n:30000
Cons ci ratio: 8.665116e-03	ci left: 8.683355e-01	ci right 8.759256e-01	k: 26165	n:30000
KS ci ratio: 9.810019e-02	ci left: 4.804908e-02	ci right 5.303842e-02	k: 1515	n:30000
SPATA5L1   30000 perm   6 sec   (4771 perm/sec)   p_kst 5.050000e-02   p_cons 8.721667e-01   p_joint 3.479667e-01

Outputting figure to mutsig2_images.part000000000165/SPATA5L1.2_2294_30000_0.0505_0.87217_0.34797.png
                gene_name: SPATA5L1
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 75 percent done.
SPEN
Processing conservation and coverage...
90% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.674103e-02	ci left: 6.731734e-01	ci right 6.915203e-01	k: 6824	n:10000
KS ci ratio: 5.727471e-02	ci left: 3.097694e-01	ci right 3.281362e-01	k: 3189	n:10000
SPEN   10000 perm   3 sec   (2876 perm/sec)   p_kst 3.189000e-01   p_cons 6.824000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000165/SPEN.2_11055_10000_0.3189_0.6824_1.png
                gene_name: SPEN
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000165
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 165 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1711>
Subject: Job 9878232: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1711>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000166> was used as the working directory.
Started at Fri Oct  5 22:58:09 2012
Results reported at Fri Oct  5 23:00:58 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000166.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000166.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 166  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000166.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    183.98 sec.
    Max Memory :      2044 MB
    Max Swap   :      4581 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
166
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 166
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 166: processing genes 14962 - 15051
Calculating significance of each gene.
Using projection method.
14962	SPINT1	1
14963	SPINT2	1
14964	SPINT4	1
14965	SPIRE1	1
14966	SPIRE2	1
14967	SPN	1
14968	SPNS1	1
14969	SPNS2	1
14970	SPNS3	1
14971	SPO11	1
14972	SPOCD1	1
14973	SPOCK1	1
14974	SPOCK2	1
14975	SPOCK3	1
14976	SPON1	1
14977	SPON2	1
14978	SPOP	5.090468e-06
14979	SPOPL	1
14980	SPP1	1
14981	SPP2	1
14982	SPPL2A	1
14983	SPPL2B	1
14984	SPPL3	1
14985	SPR	1
14986	SPRED1	1
14987	SPRED2	1
14988	SPRED3	1
14989	SPRR1A	1
14990	SPRR1B	1
14991	SPRR2A	1
14992	SPRR2B	1
14993	SPRR2D	1
14994	SPRR2E	1
14995	SPRR2F	1.280289e-02
14996	SPRR2G	1
14997	SPRR3	3.332719e-02
14998	SPRR4	1
14999	SPRY1	1
15000/18134 15000	SPRY2	1
15001	SPRY3	9.480655e-02
15002	SPRY4	1
15003	SPRYD3	1
15004	SPRYD4	5.438184e-02
15005	SPRYD5	1
15006	SPSB1	1
15007	SPSB2	1
15008	SPSB3	1.941329e-02
15009	SPSB4	1
15010	SPTA1	1
15011	SPTAN1	3.604590e-01
15012	SPTB	1
15013	SPTBN1	1
15014	SPTBN2	1
15015	SPTBN4	5.248365e-01
15016	SPTBN5	1.671203e-01
15017	SPTLC1	1
15018	SPTLC2	1
15019	SPTLC3	1
15020	SPTY2D1	1
15021	SPZ1	1
15022	SQLE	1
15023	SQRDL	1
15024	SQSTM1	1
15025	SR140	1.118016e-01
15026	SRA1	1
15027	SRBD1	1
15028	SRC	1
15029	SRCAP	4.941844e-01
15030	SRCIN1	1
In gene SRCRB4D the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 1169    n = 1	mu =   9.08e-07
15031	SRCRB4D	1.423574e-01
15032	SRD5A1	1
15033	SRD5A2	1
15034	SRD5A3	1
15035	SREBF1	1
15036	SREBF2	2.945958e-01
15037	SRF	1
15038	SRFBP1	7.863922e-02
15039	SRGAP1	1
15040	SRGAP2	1
15041	SRGAP3	1
15042	SRGN	1
15043	SRI	1
15044	SRL	1
15045	SRM	1
15046	SRMS	1.523970e-01
15047	SRP14	1
15048	SRP19	1
15049	SRP54	1
In gene SRP68 the following bins exceed PROBCAP:
    PRAD-G9-6367	categ 6	N = 1926    n = 1	mu =   6.65e-08
15050	SRP68	2.818404e-02
15051	SRP72	1
Done

Running MutSig 2:
Scatter job 166: processing genes 14962 - 15051
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SPOP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.771017e-01	ci left: 4.255135e-02	ci right 5.091525e-02	k: 466	n:10000
Cons ci ratio: 6.491644e-02	ci left: 2.584471e-01	ci right 2.758888e-01	k: 2671	n:10000
KS ci ratio: 4.184154e-01	ci left: 6.884481e-03	ci right 1.061018e-02	k: 86	n:10000
SPOP   10000 perm   2 sec   (6160 perm/sec)   p_kst 8.600000e-03   p_cons 2.671000e-01   p_joint 4.660000e-02

Joint ci ratio: 1.425113e-01	ci left: 3.384702e-02	ci right 3.908886e-02	k: 728	n:20000
Cons ci ratio: 4.575710e-02	ci left: 2.622677e-01	ci right 2.745997e-01	k: 5368	n:20000
KS ci ratio: 2.958716e-01	ci left: 7.413449e-03	ci right 1.003239e-02	k: 173	n:20000
SPOP   20000 perm   5 sec   (3673 perm/sec)   p_kst 8.650000e-03   p_cons 2.684000e-01   p_joint 3.640000e-02

Joint ci ratio: 1.635002e-01	ci left: 1.726117e-02	ci right 2.036634e-02	k: 563	n:30000
Cons ci ratio: 3.743207e-02	ci left: 2.626627e-01	ci right 2.727157e-01	k: 8030	n:30000
KS ci ratio: 2.458934e-01	ci left: 7.367115e-03	ci right 9.463093e-03	k: 251	n:30000
SPOP   30000 perm   8 sec   (3997 perm/sec)   p_kst 8.366667e-03   p_cons 2.676667e-01   p_joint 1.876667e-02

Joint ci ratio: 1.554420e-01	ci left: 1.443239e-02	ci right 1.688866e-02	k: 625	n:40000
Cons ci ratio: 3.238412e-02	ci left: 2.637386e-01	ci right 2.724451e-01	k: 10723	n:40000
KS ci ratio: 2.175693e-01	ci left: 7.174001e-03	ci right 8.948532e-03	k: 321	n:40000
SPOP   40000 perm   11 sec   (3805 perm/sec)   p_kst 8.025000e-03   p_cons 2.680750e-01   p_joint 1.562500e-02

Joint ci ratio: 1.585347e-01	ci left: 1.112165e-02	ci right 1.305562e-02	k: 603	n:50000
Cons ci ratio: 2.897559e-02	ci left: 2.640616e-01	ci right 2.718454e-01	k: 13397	n:50000
KS ci ratio: 2.003242e-01	ci left: 6.838468e-03	ci right 8.379527e-03	k: 379	n:50000
SPOP   50000 perm   14 sec   (3682 perm/sec)   p_kst 7.580000e-03   p_cons 2.679400e-01   p_joint 1.206000e-02

Joint ci ratio: 1.625461e-01	ci left: 8.819250e-03	ci right 1.039540e-02	k: 575	n:60000
Cons ci ratio: 2.652490e-02	ci left: 2.633138e-01	ci right 2.704087e-01	k: 16011	n:60000
KS ci ratio: 1.851339e-01	ci left: 6.729813e-03	ci right 8.118472e-03	k: 444	n:60000
SPOP   60000 perm   18 sec   (3362 perm/sec)   p_kst 7.400000e-03   p_cons 2.668500e-01   p_joint 9.583333e-03

Joint ci ratio: 1.247921e-01	ci left: 1.303191e-02	ci right 1.478015e-02	k: 972	n:70000
Cons ci ratio: 2.456776e-02	ci left: 2.634123e-01	ci right 2.699785e-01	k: 18668	n:70000
KS ci ratio: 1.694659e-01	ci left: 6.942612e-03	ci right 8.241563e-03	k: 530	n:70000
SPOP   70000 perm   22 sec   (3247 perm/sec)   p_kst 7.571429e-03   p_cons 2.666857e-01   p_joint 1.388571e-02

Joint ci ratio: 1.271022e-01	ci left: 1.100267e-02	ci right 1.250805e-02	k: 939	n:80000
Cons ci ratio: 2.290563e-02	ci left: 2.649081e-01	ci right 2.710587e-01	k: 21438	n:80000
KS ci ratio: 1.581089e-01	ci left: 7.021868e-03	ci right 8.239247e-03	k: 609	n:80000
SPOP   80000 perm   26 sec   (3104 perm/sec)   p_kst 7.612500e-03   p_cons 2.679750e-01   p_joint 1.173750e-02

Joint ci ratio: 1.392091e-01	ci left: 8.125054e-03	ci right 9.351370e-03	k: 785	n:90000
Cons ci ratio: 2.159373e-02	ci left: 2.651194e-01	ci right 2.709178e-01	k: 24121	n:90000
KS ci ratio: 1.502011e-01	ci left: 6.946697e-03	ci right 8.085391e-03	k: 675	n:90000
SPOP   90000 perm   30 sec   (3044 perm/sec)   p_kst 7.500000e-03   p_cons 2.680111e-01   p_joint 8.722222e-03

Joint ci ratio: 1.452577e-01	ci left: 6.704594e-03	ci right 7.764289e-03	k: 722	n:100000
Cons ci ratio: 2.043781e-02	ci left: 2.661835e-01	ci right 2.716899e-01	k: 26893	n:100000
KS ci ratio: 1.432749e-01	ci left: 6.897423e-03	ci right 7.971444e-03	k: 742	n:100000
SPOP   100000 perm   32 sec   (3100 perm/sec)   p_kst 7.420000e-03   p_cons 2.689300e-01   p_joint 7.220000e-03

Joint ci ratio: 1.197628e-01	ci left: 9.067470e-03	ci right 1.023133e-02	k: 1060	n:110000
Cons ci ratio: 1.951619e-02	ci left: 2.657195e-01	ci right 2.709655e-01	k: 29517	n:110000
KS ci ratio: 1.362968e-01	ci left: 6.954700e-03	ci right 7.980617e-03	k: 820	n:110000
SPOP   110000 perm   35 sec   (3114 perm/sec)   p_kst 7.454545e-03   p_cons 2.683364e-01   p_joint 9.636364e-03

Joint ci ratio: 1.006469e-01	ci left: 1.185465e-02	ci right 1.311908e-02	k: 1497	n:120000
Cons ci ratio: 1.869186e-02	ci left: 2.656949e-01	ci right 2.707163e-01	k: 32184	n:120000
KS ci ratio: 1.295243e-01	ci left: 7.084131e-03	ci right 8.073223e-03	k: 908	n:120000
SPOP   120000 perm   39 sec   (3113 perm/sec)   p_kst 7.566667e-03   p_cons 2.682000e-01   p_joint 1.247500e-02

Joint ci ratio: 1.069770e-01	ci left: 9.675879e-03	ci right 1.077690e-02	k: 1328	n:130000
Cons ci ratio: 1.798326e-02	ci left: 2.652562e-01	ci right 2.700773e-01	k: 34796	n:130000
KS ci ratio: 1.244270e-01	ci left: 7.105252e-03	ci right 8.055373e-03	k: 984	n:130000
SPOP   130000 perm   42 sec   (3103 perm/sec)   p_kst 7.569231e-03   p_cons 2.676615e-01   p_joint 1.021538e-02

Joint ci ratio: 9.455096e-02	ci left: 1.155477e-02	ci right 1.270843e-02	k: 1697	n:140000
Cons ci ratio: 1.735366e-02	ci left: 2.647908e-01	ci right 2.694332e-01	k: 37395	n:140000
KS ci ratio: 1.218113e-01	ci left: 6.895371e-03	ci right 7.796642e-03	k: 1027	n:140000
SPOP   140000 perm   45 sec   (3119 perm/sec)   p_kst 7.335714e-03   p_cons 2.671071e-01   p_joint 1.212143e-02

Joint ci ratio: 1.025881e-01	ci left: 9.145198e-03	ci right 1.014056e-02	k: 1445	n:150000
Cons ci ratio: 1.675557e-02	ci left: 2.650949e-01	ci right 2.695808e-01	k: 40100	n:150000
KS ci ratio: 1.179742e-01	ci left: 6.875414e-03	ci right 7.743793e-03	k: 1095	n:150000
SPOP   150000 perm   48 sec   (3104 perm/sec)   p_kst 7.300000e-03   p_cons 2.673333e-01   p_joint 9.633333e-03

Joint ci ratio: 9.284374e-02	ci left: 1.050689e-02	ci right 1.153594e-02	k: 1762	n:160000
Cons ci ratio: 1.622647e-02	ci left: 2.650952e-01	ci right 2.694382e-01	k: 42762	n:160000
KS ci ratio: 1.139860e-01	ci left: 6.919069e-03	ci right 7.761431e-03	k: 1173	n:160000
SPOP   160000 perm   52 sec   (3093 perm/sec)   p_kst 7.331250e-03   p_cons 2.672625e-01   p_joint 1.101250e-02

Joint ci ratio: 9.568325e-02	ci left: 9.308446e-03	ci right 1.024956e-02	k: 1661	n:170000
Cons ci ratio: 1.574593e-02	ci left: 2.650624e-01	ci right 2.692750e-01	k: 45418	n:170000
KS ci ratio: 1.112756e-01	ci left: 6.843615e-03	ci right 7.655679e-03	k: 1231	n:170000
SPOP   170000 perm   55 sec   (3093 perm/sec)   p_kst 7.241176e-03   p_cons 2.671647e-01   p_joint 9.770588e-03

Joint ci ratio: 8.489768e-02	ci left: 1.120834e-02	ci right 1.220748e-02	k: 2106	n:180000
Cons ci ratio: 1.530071e-02	ci left: 2.651623e-01	ci right 2.692563e-01	k: 48097	n:180000
KS ci ratio: 1.077448e-01	ci left: 6.906505e-03	ci right 7.698377e-03	k: 1313	n:180000
SPOP   180000 perm   58 sec   (3090 perm/sec)   p_kst 7.294444e-03   p_cons 2.672056e-01   p_joint 1.170000e-02

Joint ci ratio: 8.272853e-02	ci left: 1.119554e-02	ci right 1.216681e-02	k: 2218	n:190000
Cons ci ratio: 1.488484e-02	ci left: 2.654213e-01	ci right 2.694069e-01	k: 50808	n:190000
KS ci ratio: 1.052540e-01	ci left: 6.865743e-03	ci right 7.633617e-03	k: 1376	n:190000
SPOP   190000 perm   62 sec   (3087 perm/sec)   p_kst 7.242105e-03   p_cons 2.674105e-01   p_joint 1.167368e-02

Joint ci ratio: 8.777007e-02	ci left: 9.441366e-03	ci right 1.031293e-02	k: 1974	n:200000
Cons ci ratio: 1.450372e-02	ci left: 2.655858e-01	ci right 2.694709e-01	k: 53505	n:200000
KS ci ratio: 1.028204e-01	ci left: 6.843865e-03	ci right 7.590525e-03	k: 1442	n:200000
SPOP   200000 perm   65 sec   (3084 perm/sec)   p_kst 7.210000e-03   p_cons 2.675250e-01   p_joint 9.870000e-03

Joint ci ratio: 8.575408e-02	ci left: 9.429681e-03	ci right 1.027917e-02	k: 2068	n:210000
Cons ci ratio: 1.415441e-02	ci left: 2.656266e-01	ci right 2.694179e-01	k: 56179	n:210000
KS ci ratio: 1.002476e-01	ci left: 6.866044e-03	ci right 7.595276e-03	k: 1517	n:210000
SPOP   210000 perm   68 sec   (3078 perm/sec)   p_kst 7.223810e-03   p_cons 2.675190e-01   p_joint 9.847619e-03

Joint ci ratio: 8.732045e-02	ci left: 8.680722e-03	ci right 9.477748e-03	k: 1996	n:220000
Cons ci ratio: 1.384234e-02	ci left: 2.652928e-01	ci right 2.689952e-01	k: 58771	n:220000
KS ci ratio: 9.804479e-02	ci left: 6.859810e-03	ci right 7.571449e-03	k: 1586	n:220000
SPOP   220000 perm   72 sec   (3059 perm/sec)   p_kst 7.209091e-03   p_cons 2.671409e-01   p_joint 9.072727e-03

Outputting figure to mutsig2_images.part000000000166/SPOP.4_1161_220000_0.0072091_0.26714_0.0090727.png
                gene_name: SPOP
               theta_stop: 0.098 
                    nperm: 220000 
                     p_ks: 0.0072 
        ci_ks_bounds_left: 0.0069 
       ci_ks_bounds_right: 0.0076 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.0091 
     ci_joint_bounds_left: 0.0087 
    ci_joint_bounds_right: 0.0095 

Current progress: 33 percent done.
SPTA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.219017e-02	ci left: 5.875100e-01	ci right 6.068334e-01	k: 5972	n:10000
Cons ci ratio: 2.434149e-02	ci left: 7.128025e-01	ci right 7.304682e-01	k: 7217	n:10000
KS ci ratio: 8.585446e-02	ci left: 1.650429e-01	ci right 1.799484e-01	k: 1724	n:10000
SPTA1   10000 perm   2 sec   (4221 perm/sec)   p_kst 1.724000e-01   p_cons 7.217000e-01   p_joint 5.972000e-01

Outputting figure to mutsig2_images.part000000000166/SPTA1.3_7468_10000_0.1724_0.7217_0.5972.png
                gene_name: SPTA1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 67 percent done.
SPTBN5
Processing conservation and coverage...
89% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.058784e-02	ci left: 2.273104e-01	ci right 2.440439e-01	k: 2356	n:10000
Cons ci ratio: 6.411390e-02	ci left: 2.632958e-01	ci right 2.808372e-01	k: 2720	n:10000
KS ci ratio: 5.613456e-02	ci left: 3.185017e-01	ci right 3.369988e-01	k: 3277	n:10000
SPTBN5   10000 perm   3 sec   (3692 perm/sec)   p_kst 3.277000e-01   p_cons 2.720000e-01   p_joint 2.356000e-01

Outputting figure to mutsig2_images.part000000000166/SPTBN5.2_11188_10000_0.3277_0.272_0.2356.png
                gene_name: SPTBN5
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000166
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 166 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1730>
Subject: Job 9878238: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1730>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000167> was used as the working directory.
Started at Fri Oct  5 22:58:43 2012
Results reported at Fri Oct  5 22:59:43 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000167.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000167.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 167  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000167.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     57.87 sec.
    Max Memory :       886 MB
    Max Swap   :      3669 MB

    Max Processes  :         7
    Max Threads    :        67

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
167
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 167
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 167: processing genes 15052 - 15142
Calculating significance of each gene.
Using projection method.
15052	SRP9	1
15053	SRPK1	6.696052e-02
15054	SRPK2	1
15055	SRPK3	1
15056	SRPR	2.239682e-01
15057	SRPRB	7.190564e-02
15058	SRPX	1
15059	SRPX2	1
15060	SRR	1
15061	SRRD	8.057856e-02
15062	SRRM1	1
In gene SRRM2 the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 8169    n = 1	mu =   9.08e-07
15063	SRRM2	6.424342e-01
15064	SRRM3	1
15065	SRRM4	1
15066	SRRT	1
15067	SRXN1	1
15068	SRY	1
15069	SS18	1
15070	SS18L1	1
15071	SS18L2	1
15072	SSB	9.171716e-02
15073	SSBP1	1
15074	SSBP2	1
15075	SSBP3	1
15076	SSBP4	1
15077	SSFA2	1
15078	SSH1	2.214635e-01
15079	SSH2	1
15080	SSH3	1
15081	SSNA1	1
15082	SSPN	1
15083	SSPO	3.477248e-01
15084	SSR1	1
15085	SSR2	1
15086	SSR3	1.944722e-02
15087	SSR4	1
15088	SSRP1	1
15089	SSSCA1	7.917007e-02
15090	SST	1
15091	SSTR1	1
15092	SSTR2	1.209102e-01
15093	SSTR3	1
15094	SSTR4	1
15095	SSTR5	1
15096	SSU72	1
15097	SSX1	1
15098	SSX2IP	1
15099	SSX3	1
15100	SSX5	1
15101	SSX7	1
15102	ST13	1
15103	ST14	1
15104	ST18	1
15105	ST20	1
15106	ST3GAL1	1
15107	ST3GAL2	1
15108	ST3GAL3	1
15109	ST3GAL4	1
15110	ST3GAL5	1
15111	ST3GAL6	1
15112	ST5	2.723658e-01
15113	ST6GAL1	1
15114	ST6GAL2	1
15115	ST6GALNAC1	1
15116	ST6GALNAC2	2.564421e-02
15117	ST6GALNAC3	1
15118	ST6GALNAC4	1
15119	ST6GALNAC5	1
15120	ST6GALNAC6	1
15121	ST7	1
15122	ST7L	1
15123	ST8SIA1	1
15124	ST8SIA2	1
15125	ST8SIA3	7.016516e-02
15126	ST8SIA4	1
15127	ST8SIA5	1
15128	ST8SIA6	1
15129	STAB1	4.988007e-01
15130	STAB2	1
15131	STAC	1
15132	STAC2	1
15133	STAC3	1
15134	STAG1	1
15135	STAG2	1
15136	STAG3	3.406297e-01
15137	STAG3L2	1
15138	STAG3L3	1
15139	STAG3L4	1
15140	STAM	1
15141	STAM2	1
15142	STAMBP	1
Done

Running MutSig 2:
Scatter job 167: processing genes 15052 - 15142
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SSPO
Processing conservation and coverage...
62% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.294486e-02	ci left: 5.762723e-01	ci right 5.956776e-01	k: 5860	n:10000
KS ci ratio: 1.950885e-02	ci left: 7.935450e-01	ci right 8.092791e-01	k: 8015	n:10000
SSPO   10000 perm   3 sec   (3517 perm/sec)   p_kst 8.015000e-01   p_cons 5.860000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000167/SSPO.2_15875_10000_0.8015_0.586_1.png
                gene_name: SSPO
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000167
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 167 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1711>
Subject: Job 9878246: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1711>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000168> was used as the working directory.
Started at Fri Oct  5 22:59:14 2012
Results reported at Fri Oct  5 23:00:49 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000168.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000168.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 168  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000168.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    109.32 sec.
    Max Memory :      1136 MB
    Max Swap   :      3928 MB

    Max Processes  :         7
    Max Threads    :        55

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
168
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 168
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 168: processing genes 15143 - 15233
Calculating significance of each gene.
Using projection method.
15143	STAMBPL1	1
15144	STAP1	1
15145	STAP2	1
15146	STAR	1
15147	STARD10	1
15148	STARD13	1
15149	STARD3	9.370673e-02
15150	STARD3NL	1
15151	STARD4	1
15152	STARD5	1
15153	STARD6	1
15154	STARD7	1
15155	STARD8	1
15156	STAT1	1
15157	STAT2	1
15158	STAT3	5.402437e-03
In gene STAT4 the following bins exceed PROBCAP:
    PRAD-CH-5765	categ 6	N = 2339    n = 1	mu =   3.34e-07
15159	STAT4	9.976142e-02
15160	STAT5A	1
15161	STAT5B	1.267932e-01
15162	STAT6	1
15163	STATH	1
15164	STAU1	1
15165	STAU2	1
15166	STBD1	1
15167	STC1	1
15168	STC2	1
15169	STEAP1	1
15170	STEAP2	1
15171	STEAP3	1
15172	STEAP4	1
15173	STH	1
15174	STIL	1
15175	STIM1	1
15176	STIM2	1
15177	STIP1	1
15178	STK10	1
15179	STK11	1
15180	STK11IP	1
15181	STK16	1
15182	STK17A	6.259733e-02
15183	STK17B	1
15184	STK19	6.490771e-02
15185	STK24	1
15186	STK25	1
15187	STK3	1
15188	STK31	1
15189	STK32A	1
15190	STK32B	1
15191	STK32C	7.665590e-02
15192	STK33	1
15193	STK35	3.178062e-02
15194	STK36	3.428549e-01
15195	STK38	1
15196	STK38L	1
15197	STK39	1
15198	STK4	1.430710e-01
15199	STK40	1
15200	STMN1	1
15201	STMN2	1
15202	STMN3	1
15203	STMN4	1
15204	STOM	1
15205	STOML1	1
15206	STOML2	1
15207	STOML3	1
15208	STON1	1
15209	STON1-GTF2A1L	3.120451e-02
15210	STON2	1
15211	STOX1	1
15212	STOX2	1
15213	STRA13	1
15214	STRA6	1
15215	STRA8	1
15216	STRADA	1
15217	STRADB	1
15218	STRAP	1
15219	STRBP	1
15220	STRC	1.424184e-01
15221	STRN	1.293144e-01
15222	STRN3	1
15223	STRN4	1
15224	STS	7.056885e-02
15225	STT3A	1
15226	STT3B	1
15227	STUB1	1
15228	STX10	1
15229	STX11	1
15230	STX12	1
15231	STX16	1
15232	STX17	1
15233	STX18	1
Done

Running MutSig 2:
Scatter job 168: processing genes 15143 - 15233
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
STAT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.375245e-02	ci left: 5.644382e-01	ci right 5.839185e-01	k: 5742	n:10000
KS ci ratio: 1.752183e-02	ci left: 8.260517e-01	ci right 8.407535e-01	k: 8335	n:10000
STAT3   10000 perm   2 sec   (5831 perm/sec)   p_kst 8.335000e-01   p_cons 5.742000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000168/STAT3.2_2405_10000_0.8335_0.5742_1.png
                gene_name: STAT3
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
STON1-GTF2A1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.924902e-02	ci left: 4.894516e-01	ci right 5.091488e-01	k: 4993	n:10000
Cons ci ratio: 8.457464e-03	ci left: 9.513780e-01	ci right 9.595540e-01	k: 9556	n:10000
KS ci ratio: 9.747717e-02	ci left: 1.323733e-01	ci right 1.460376e-01	k: 1391	n:10000
STON1-GTF2A1L   10000 perm   2 sec   (5532 perm/sec)   p_kst 1.391000e-01   p_cons 9.556000e-01   p_joint 4.993000e-01

Outputting figure to mutsig2_images.part000000000168/STON1-GTF2A1L.2_3589_10000_0.1391_0.9556_0.4993.png
                gene_name: STON1-GTF2A1L
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000168
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 168 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1708>
Subject: Job 9878250: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1708>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000169> was used as the working directory.
Started at Fri Oct  5 22:59:17 2012
Results reported at Fri Oct  5 23:00:46 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000169.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000169.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 169  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000169.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     94.41 sec.
    Max Memory :      1135 MB
    Max Swap   :      3912 MB

    Max Processes  :         7
    Max Threads    :        55

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
169
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 169
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 169: processing genes 15234 - 15323
Calculating significance of each gene.
Using projection method.
15234	STX19	1
15235	STX1A	1
15236	STX1B	1
15237	STX2	1
15238	STX3	1
15239	STX4	1
15240	STX5	1
15241	STX6	1
15242	STX7	1
15243	STX8	1
15244	STXBP1	1
15245	STXBP2	1
15246	STXBP3	1
15247	STXBP4	1
15248	STXBP5	1
15249	STXBP5L	2.704609e-01
15250	STXBP6	1
15251	STYK1	1
15252	STYX	1
15253	STYXL1	1
15254	SUB1	1
15255	SUCLA2	1
15256	SUCLG1	1
15257	SUCLG2	1
15258	SUCNR1	1
15259	SUDS3	1
15260	SUFU	1
15261	SUGT1	1
15262	SULF1	2.679750e-02
15263	SULF2	1
15264	SULT1A1	1
15265	SULT1A2	1
15266	SULT1B1	1
15267	SULT1C2	1
15268	SULT1C3	1
15269	SULT1C4	1
In gene SULT1E1 the following bins exceed PROBCAP:
    PRAD-EJ-5496	categ 6	N = 913     n = 1	mu =   1.66e-07
15270	SULT1E1	1.731325e-02
15271	SULT2A1	1
15272	SULT2B1	1
15273	SULT4A1	1
15274	SULT6B1	1
15275	SUMF1	1
15276	SUMF2	1
15277	SUMO1	1
15278	SUMO2	1
15279	SUMO3	1
15280	SUMO4	1
15281	SUN1	1
15282	SUN2	1
15283	SUN3	1
15284	SUN5	1
15285	SUOX	1
15286	SUPT16H	1
15287	SUPT3H	1
15288	SUPT4H1	1
15289	SUPT5H	1.518835e-02
15290	SUPT6H	1
15291	SUPT7L	1
15292	SUPV3L1	2.474195e-01
15293	SURF1	1
15294	SURF2	1
15295	SURF4	2.953741e-02
15296	SURF6	1
15297	SUSD1	9.145058e-02
15298	SUSD2	1.264000e-01
15299	SUSD3	1
15300	SUSD4	1
15301	SUSD5	1
15302	SUV39H1	1
15303	SUV39H2	1
15304	SUV420H1	1
15305	SUV420H2	1
15306	SUZ12	1
15307	SV2A	6.282276e-02
15308	SV2B	1
15309	SV2C	1
15310	SVEP1	5.127692e-01
15311	SVIL	1
15312	SVIP	1
15313	SVOP	1
15314	SVOPL	1
15315	SWAP70	1
15316	SYAP1	1
15317	SYBU	1
15318	SYCE1	1.486690e-02
15319	SYCE2	1
15320	SYCN	1
15321	SYCP1	1
15322	SYCP2	1
15323	SYCP2L	1
Done

Running MutSig 2:
Scatter job 169: processing genes 15234 - 15323
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SULF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.579340e-02	ci left: 4.130914e-01	ci right 4.325536e-01	k: 4228	n:10000
KS ci ratio: 3.073150e-02	ci left: 6.096996e-01	ci right 6.288309e-01	k: 6193	n:10000
SULF1   10000 perm   2 sec   (4881 perm/sec)   p_kst 6.193000e-01   p_cons 4.228000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000169/SULF1.2_2692_10000_0.6193_0.4228_1.png
                gene_name: SULF1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
SUPT5H
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.337237e-03	ci left: 9.856678e-01	ci right 9.900411e-01	k: 9880	n:10000
Cons ci ratio: 6.239472e-02	ci left: 2.740864e-01	ci right 2.918402e-01	k: 2829	n:10000
KS ci ratio: 2.152098e-02	ci left: 7.600043e-01	ci right 7.766391e-01	k: 7684	n:10000
SUPT5H   10000 perm   2 sec   (5607 perm/sec)   p_kst 7.684000e-01   p_cons 2.829000e-01   p_joint 9.880000e-01

Outputting figure to mutsig2_images.part000000000169/SUPT5H.2_3380_10000_0.7684_0.2829_0.988.png
                gene_name: SUPT5H
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000169
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 169 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1547>
Subject: Job 9878254: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1547>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000170> was used as the working directory.
Started at Fri Oct  5 22:59:17 2012
Results reported at Fri Oct  5 23:07:49 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000170.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000170.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 170  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000170.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    515.58 sec.
    Max Memory :      2334 MB
    Max Swap   :      4709 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
170
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 170
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 170: processing genes 15324 - 15414
Calculating significance of each gene.
Using projection method.
15324	SYCP3	1
15325	SYDE1	1
15326	SYDE2	1
15327	SYF2	1
15328	SYK	2.165065e-02
15329	SYMPK	1
15330	SYN1	1
15331	SYN2	1
15332	SYN3	1
15333	SYNC	1
15334	SYNCRIP	1
15335	SYNE1	1.550595e-01
15336	SYNE2	1
15337	SYNGAP1	1
15338	SYNGR1	1
15339	SYNGR2	1
15340	SYNGR3	1
15341	SYNGR4	1
15342	SYNJ1	1
15343	SYNJ2	1
15344	SYNJ2BP	1
15345	SYNM	1
15346	SYNPO	1
15347	SYNPO2	1
15348	SYNPO2L	1
15349	SYNPR	1
15350	SYNRG	2.078581e-01
15351	SYP	1
15352	SYPL1	1
15353	SYPL2	1
15354	SYS1	1
15355	SYT1	1
15356	SYT10	1
15357	SYT11	1.070676e-01
15358	SYT12	1
15359	SYT13	1
15360	SYT14	1
15361	SYT15	1
15362	SYT16	6.095014e-02
15363	SYT17	1
15364	SYT2	1
15365	SYT3	1
15366	SYT4	1
15367	SYT5	1
15368	SYT6	1
15369	SYT7	1
15370	SYT8	1
15371	SYT9	1
15372	SYTL1	1
15373	SYTL2	1
15374	SYTL3	1
15375	SYTL4	1
15376	SYTL5	1
15377	SYVN1	1
15378	T	1
15379	TAAR1	1
15380	TAAR2	1
15381	TAAR5	1
15382	TAAR6	1
15383	TAAR8	1
15384	TAAR9	2.925338e-02
15385	TAB1	1
15386	TAB2	1
15387	TAB3	1
15388	TAC1	1
15389	TAC3	1
15390	TAC4	1
15391	TACC1	1
15392	TACC2	1
15393	TACC3	1
15394	TACO1	1
15395	TACR1	1
15396	TACR2	1
15397	TACR3	1.071765e-01
15398	TACSTD2	1
15399	TADA1	1
15400	TADA2A	1
15401	TADA2B	1
15402	TADA3	1
15403	TAF1	1
15404	TAF10	1
15405	TAF11	1
15406	TAF12	1
15407	TAF13	1
In gene TAF15 the following bins exceed PROBCAP:
    PRAD-CH-5792	categ 6	N = 1827    n = 1	mu =   2.67e-07
15408	TAF15	6.470982e-02
15409	TAF1A	1
15410	TAF1B	1
15411	TAF1C	1
15412	TAF1D	3.706958e-02
15413	TAF1L	1.514049e-02
15414	TAF2	1
Done

Running MutSig 2:
Scatter job 170: processing genes 15324 - 15414
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SYNE1
Processing conservation and coverage...
36% 73% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.519761e-02	ci left: 6.985753e-01	ci right 7.165037e-01	k: 7076	n:10000
Cons ci ratio: 1.721173e-02	ci left: 8.310374e-01	ci right 8.455650e-01	k: 8384	n:10000
KS ci ratio: 3.681323e-02	ci left: 5.214615e-01	ci right 5.411203e-01	k: 5313	n:10000
SYNE1   10000 perm   7 sec   (1343 perm/sec)   p_kst 5.313000e-01   p_cons 8.384000e-01   p_joint 7.076000e-01

Outputting figure to mutsig2_images.part000000000170/SYNE1.5_27068_10000_0.5313_0.8384_0.7076.png
                gene_name: SYNE1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 25 percent done.
TAF1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.029257e-01	ci left: 2.024975e-03	ci right 4.279939e-03	k: 30	n:10000
Cons ci ratio: 3.376227e-01	ci left: 1.105573e-02	ci right 1.563427e-02	k: 132	n:10000
KS ci ratio: 2.264156e-01	ci left: 2.579881e-02	ci right 3.247924e-02	k: 290	n:10000
TAF1L   10000 perm   3 sec   (3516 perm/sec)   p_kst 2.900000e-02   p_cons 1.320000e-02   p_joint 3.000000e-03

Joint ci ratio: 4.346619e-01	ci left: 3.172987e-03	ci right 4.975909e-03	k: 80	n:20000
Cons ci ratio: 2.382876e-01	ci left: 1.175842e-02	ci right 1.498535e-02	k: 266	n:20000
KS ci ratio: 1.477441e-01	ci left: 3.148306e-02	ci right 3.655359e-02	k: 679	n:20000
TAF1L   20000 perm   6 sec   (3488 perm/sec)   p_kst 3.395000e-02   p_cons 1.330000e-02   p_joint 4.000000e-03

Joint ci ratio: 2.857593e-01	ci left: 5.343177e-03	ci right 7.154445e-03	k: 186	n:30000
Cons ci ratio: 1.941943e-01	ci left: 1.209779e-02	ci right 1.473103e-02	k: 401	n:30000
KS ci ratio: 1.229612e-01	ci left: 3.074850e-02	ci right 3.480931e-02	k: 982	n:30000
TAF1L   30000 perm   9 sec   (3221 perm/sec)   p_kst 3.273333e-02   p_cons 1.336667e-02   p_joint 6.200000e-03

Joint ci ratio: 2.461547e-01	ci left: 5.524664e-03	ci right 7.098301e-03	k: 251	n:40000
Cons ci ratio: 1.664551e-01	ci left: 1.253581e-02	ci right 1.483559e-02	k: 546	n:40000
KS ci ratio: 1.050330e-01	ci left: 3.187989e-02	ci right 3.543823e-02	k: 1345	n:40000
TAF1L   40000 perm   13 sec   (3138 perm/sec)   p_kst 3.362500e-02   p_cons 1.365000e-02   p_joint 6.275000e-03

Joint ci ratio: 2.595857e-01	ci left: 3.950959e-03	ci right 5.147684e-03	k: 226	n:50000
Cons ci ratio: 1.487446e-01	ci left: 1.268015e-02	ci right 1.473688e-02	k: 684	n:50000
KS ci ratio: 9.454223e-02	ci left: 3.166633e-02	ci right 3.482817e-02	k: 1661	n:50000
TAF1L   50000 perm   16 sec   (3094 perm/sec)   p_kst 3.322000e-02   p_cons 1.368000e-02   p_joint 4.520000e-03

Joint ci ratio: 2.148658e-01	ci left: 4.923914e-03	ci right 6.124677e-03	k: 330	n:60000
Cons ci ratio: 1.358686e-01	ci left: 1.275291e-02	ci right 1.462789e-02	k: 820	n:60000
KS ci ratio: 8.706192e-02	ci left: 3.125860e-02	ci right 3.412017e-02	k: 1960	n:60000
TAF1L   60000 perm   20 sec   (3053 perm/sec)   p_kst 3.266667e-02   p_cons 1.366667e-02   p_joint 5.500000e-03

Joint ci ratio: 1.752095e-01	ci left: 6.477708e-03	ci right 7.735099e-03	k: 496	n:70000
Cons ci ratio: 1.252498e-01	ci left: 1.293500e-02	ci right 1.467708e-02	k: 965	n:70000
KS ci ratio: 8.093041e-02	ci left: 3.111462e-02	ci right 3.375290e-02	k: 2269	n:70000
TAF1L   70000 perm   23 sec   (3054 perm/sec)   p_kst 3.241429e-02   p_cons 1.378571e-02   p_joint 7.085714e-03

Joint ci ratio: 1.774566e-01	ci left: 5.524369e-03	ci right 6.611920e-03	k: 484	n:80000
Cons ci ratio: 1.172144e-01	ci left: 1.297874e-02	ci right 1.460680e-02	k: 1102	n:80000
KS ci ratio: 7.575313e-02	ci left: 3.115925e-02	ci right 3.362482e-02	k: 2590	n:80000
TAF1L   80000 perm   26 sec   (3045 perm/sec)   p_kst 3.237500e-02   p_cons 1.377500e-02   p_joint 6.050000e-03

Joint ci ratio: 1.996134e-01	ci left: 3.840761e-03	ci right 4.702784e-03	k: 383	n:90000
Cons ci ratio: 1.103251e-01	ci left: 1.306960e-02	ci right 1.460642e-02	k: 1244	n:90000
KS ci ratio: 7.178908e-02	ci left: 3.091429e-02	ci right 3.322711e-02	k: 2885	n:90000
TAF1L   90000 perm   30 sec   (3027 perm/sec)   p_kst 3.205556e-02   p_cons 1.382222e-02   p_joint 4.255556e-03

Joint ci ratio: 2.116055e-01	ci left: 3.058156e-03	ci right 3.791113e-03	k: 341	n:100000
Cons ci ratio: 1.041432e-01	ci left: 1.324195e-02	ci right 1.470644e-02	k: 1396	n:100000
KS ci ratio: 6.804669e-02	ci left: 3.102594e-02	ci right 3.322131e-02	k: 3211	n:100000
TAF1L   100000 perm   33 sec   (3005 perm/sec)   p_kst 3.211000e-02   p_cons 1.396000e-02   p_joint 3.410000e-03

Joint ci ratio: 2.054060e-01	ci left: 2.961068e-03	ci right 3.647351e-03	k: 362	n:110000
Cons ci ratio: 1.000823e-01	ci left: 1.306569e-02	ci right 1.445103e-02	k: 1512	n:110000
KS ci ratio: 6.519716e-02	ci left: 3.077983e-02	ci right 3.286313e-02	k: 3499	n:110000
TAF1L   110000 perm   37 sec   (2980 perm/sec)   p_kst 3.180909e-02   p_cons 1.374545e-02   p_joint 3.290909e-03

Joint ci ratio: 2.271789e-01	ci left: 2.193927e-03	ci right 2.763875e-03	k: 296	n:120000
Cons ci ratio: 9.601474e-02	ci left: 1.304178e-02	ci right 1.436521e-02	k: 1643	n:120000
KS ci ratio: 6.338102e-02	ci left: 2.991169e-02	ci right 3.187774e-02	k: 3706	n:120000
TAF1L   120000 perm   41 sec   (2953 perm/sec)   p_kst 3.088333e-02   p_cons 1.369167e-02   p_joint 2.466667e-03

Joint ci ratio: 1.487264e-01	ci left: 4.919935e-03	ci right 5.717760e-03	k: 690	n:130000
Cons ci ratio: 9.232688e-02	ci left: 1.304506e-02	ci right 1.431523e-02	k: 1777	n:130000
KS ci ratio: 6.088606e-02	ci left: 2.995837e-02	ci right 3.184724e-02	k: 4016	n:130000
TAF1L   130000 perm   44 sec   (2924 perm/sec)   p_kst 3.089231e-02   p_cons 1.366923e-02   p_joint 5.307692e-03

Joint ci ratio: 1.559486e-01	ci left: 4.142394e-03	ci right 4.849798e-03	k: 628	n:140000
Cons ci ratio: 8.908098e-02	ci left: 1.303474e-02	ci right 1.425696e-02	k: 1909	n:140000
KS ci ratio: 5.855268e-02	ci left: 3.011236e-02	ci right 3.193571e-02	k: 4342	n:140000
TAF1L   140000 perm   48 sec   (2896 perm/sec)   p_kst 3.101429e-02   p_cons 1.363571e-02   p_joint 4.485714e-03

Joint ci ratio: 1.478155e-01	ci left: 4.321618e-03	ci right 5.017741e-03	k: 699	n:150000
Cons ci ratio: 8.621921e-02	ci left: 1.300690e-02	ci right 1.418535e-02	k: 2038	n:150000
KS ci ratio: 5.629452e-02	ci left: 3.043112e-02	ci right 3.220039e-02	k: 4696	n:150000
TAF1L   150000 perm   52 sec   (2860 perm/sec)   p_kst 3.130667e-02   p_cons 1.358667e-02   p_joint 4.660000e-03

Joint ci ratio: 1.480497e-01	ci left: 4.039436e-03	ci right 4.691225e-03	k: 697	n:160000
Cons ci ratio: 8.363618e-02	ci left: 1.297697e-02	ci right 1.411576e-02	k: 2166	n:160000
KS ci ratio: 5.473934e-02	ci left: 3.020548e-02	ci right 3.191157e-02	k: 4968	n:160000
TAF1L   160000 perm   57 sec   (2803 perm/sec)   p_kst 3.105000e-02   p_cons 1.353750e-02   p_joint 4.356250e-03

Joint ci ratio: 1.476446e-01	ci left: 3.824449e-03	ci right 4.439710e-03	k: 701	n:170000
Cons ci ratio: 8.125426e-02	ci left: 1.295679e-02	ci right 1.405989e-02	k: 2295	n:170000
KS ci ratio: 5.305088e-02	ci left: 3.029151e-02	ci right 3.194806e-02	k: 5289	n:170000
TAF1L   170000 perm   61 sec   (2776 perm/sec)   p_kst 3.111176e-02   p_cons 1.350000e-02   p_joint 4.123529e-03

Joint ci ratio: 1.705073e-01	ci left: 2.678116e-03	ci right 3.182548e-03	k: 526	n:180000
Cons ci ratio: 7.868749e-02	ci left: 1.306455e-02	ci right 1.414009e-02	k: 2447	n:180000
KS ci ratio: 5.154279e-02	ci left: 3.033029e-02	ci right 3.194041e-02	k: 5603	n:180000
TAF1L   180000 perm   65 sec   (2749 perm/sec)   p_kst 3.112778e-02   p_cons 1.359444e-02   p_joint 2.922222e-03

Joint ci ratio: 1.652576e-01	ci left: 2.708596e-03	ci right 3.201499e-03	k: 560	n:190000
Cons ci ratio: 7.652877e-02	ci left: 1.309949e-02	ci right 1.414700e-02	k: 2587	n:190000
KS ci ratio: 5.023092e-02	ci left: 3.027720e-02	ci right 3.184241e-02	k: 5900	n:190000
TAF1L   190000 perm   70 sec   (2716 perm/sec)   p_kst 3.105263e-02   p_cons 1.361579e-02   p_joint 2.947368e-03

Joint ci ratio: 2.284504e-01	ci left: 1.302142e-03	ci right 1.642570e-03	k: 293	n:200000
Cons ci ratio: 9.794695e-02	ci left: 7.555678e-03	ci right 8.338684e-03	k: 1588	n:200000
KS ci ratio: 4.907978e-02	ci left: 3.015085e-02	ci right 3.167279e-02	k: 6181	n:200000
TAF1L   200000 perm   75 sec   (2658 perm/sec)   p_kst 3.090500e-02   p_cons 7.940000e-03   p_joint 1.465000e-03

Joint ci ratio: 1.927004e-01	ci left: 1.777172e-03	ci right 2.160593e-03	k: 412	n:210000
Cons ci ratio: 9.562834e-02	ci left: 7.558322e-03	ci right 8.322021e-03	k: 1666	n:210000
KS ci ratio: 4.784034e-02	ci left: 3.023929e-02	ci right 3.172608e-02	k: 6505	n:210000
TAF1L   210000 perm   80 sec   (2629 perm/sec)   p_kst 3.097619e-02   p_cons 7.933333e-03   p_joint 1.961905e-03

Joint ci ratio: 1.888539e-01	ci left: 1.769973e-03	ci right 2.143344e-03	k: 429	n:220000
Cons ci ratio: 9.368367e-02	ci left: 7.525405e-03	ci right 8.269466e-03	k: 1736	n:220000
KS ci ratio: 4.671146e-02	ci left: 3.029316e-02	ci right 3.174651e-02	k: 6823	n:220000
TAF1L   220000 perm   84 sec   (2604 perm/sec)   p_kst 3.101364e-02   p_cons 7.890909e-03   p_joint 1.950000e-03

Joint ci ratio: 1.873404e-01	ci left: 1.722015e-03	ci right 2.082027e-03	k: 436	n:230000
Cons ci ratio: 9.147110e-02	ci left: 7.559229e-03	ci right 8.288037e-03	k: 1821	n:230000
KS ci ratio: 4.555696e-02	ci left: 3.047602e-02	ci right 3.190105e-02	k: 7172	n:230000
TAF1L   230000 perm   89 sec   (2579 perm/sec)   p_kst 3.118261e-02   p_cons 7.917391e-03   p_joint 1.895652e-03

Joint ci ratio: 1.449642e-01	ci left: 2.817260e-03	ci right 3.261542e-03	k: 728	n:240000
Cons ci ratio: 8.905586e-02	ci left: 7.651538e-03	ci right 8.368753e-03	k: 1921	n:240000
KS ci ratio: 4.464047e-02	ci left: 3.043383e-02	ci right 3.182752e-02	k: 7470	n:240000
TAF1L   240000 perm   94 sec   (2555 perm/sec)   p_kst 3.112500e-02   p_cons 8.004167e-03   p_joint 3.033333e-03

Joint ci ratio: 1.416965e-01	ci left: 2.835695e-03	ci right 3.271952e-03	k: 762	n:250000
Cons ci ratio: 8.739051e-02	ci left: 7.634943e-03	ci right 8.336536e-03	k: 1995	n:250000
KS ci ratio: 4.365552e-02	ci left: 3.056151e-02	ci right 3.192939e-02	k: 7810	n:250000
TAF1L   250000 perm   99 sec   (2531 perm/sec)   p_kst 3.124000e-02   p_cons 7.980000e-03   p_joint 3.048000e-03

Joint ci ratio: 1.406913e-01	ci left: 2.767436e-03	ci right 3.189918e-03	k: 773	n:260000
Cons ci ratio: 8.577346e-02	ci left: 7.627268e-03	ci right 8.314537e-03	k: 2071	n:260000
KS ci ratio: 4.289078e-02	ci left: 3.045891e-02	ci right 3.179773e-02	k: 8092	n:260000
TAF1L   260000 perm   104 sec   (2501 perm/sec)   p_kst 3.112308e-02   p_cons 7.965385e-03   p_joint 2.973077e-03

Joint ci ratio: 1.387355e-01	ci left: 2.743569e-03	ci right 3.156104e-03	k: 795	n:270000
Cons ci ratio: 8.420347e-02	ci left: 7.627526e-03	ci right 8.301619e-03	k: 2149	n:270000
KS ci ratio: 4.211558e-02	ci left: 3.043376e-02	ci right 3.174671e-02	k: 8393	n:270000
TAF1L   270000 perm   110 sec   (2458 perm/sec)   p_kst 3.108519e-02   p_cons 7.959259e-03   p_joint 2.944444e-03

Joint ci ratio: 1.568764e-01	ci left: 2.050431e-03	ci right 2.402856e-03	k: 622	n:280000
Cons ci ratio: 8.275410e-02	ci left: 7.620875e-03	ci right 8.282228e-03	k: 2225	n:280000
KS ci ratio: 4.138586e-02	ci left: 3.040353e-02	ci right 3.169191e-02	k: 8692	n:280000
TAF1L   280000 perm   116 sec   (2420 perm/sec)   p_kst 3.104286e-02   p_cons 7.946429e-03   p_joint 2.221429e-03

Joint ci ratio: 1.545385e-01	ci left: 2.042690e-03	ci right 2.388068e-03	k: 641	n:290000
Cons ci ratio: 8.102304e-02	ci left: 7.682351e-03	ci right 8.334435e-03	k: 2321	n:290000
KS ci ratio: 4.065083e-02	ci left: 3.043704e-02	ci right 3.170339e-02	k: 9009	n:290000
TAF1L   290000 perm   122 sec   (2383 perm/sec)   p_kst 3.106552e-02   p_cons 8.003448e-03   p_joint 2.210345e-03

Joint ci ratio: 1.521867e-01	ci left: 2.038709e-03	ci right 2.377689e-03	k: 661	n:300000
Cons ci ratio: 7.961227e-02	ci left: 7.697385e-03	ci right 8.338840e-03	k: 2404	n:300000
KS ci ratio: 3.994920e-02	ci left: 3.047510e-02	ci right 3.172065e-02	k: 9328	n:300000
TAF1L   300000 perm   128 sec   (2347 perm/sec)   p_kst 3.109333e-02   p_cons 8.013333e-03   p_joint 2.203333e-03

Joint ci ratio: 1.510531e-01	ci left: 2.003975e-03	ci right 2.334474e-03	k: 671	n:310000
Cons ci ratio: 7.806737e-02	ci left: 7.752663e-03	ci right 8.385618e-03	k: 2500	n:310000
KS ci ratio: 3.933954e-02	ci left: 3.042461e-02	ci right 3.164869e-02	k: 9620	n:310000
TAF1L   310000 perm   134 sec   (2309 perm/sec)   p_kst 3.103226e-02   p_cons 8.064516e-03   p_joint 2.164516e-03

Joint ci ratio: 1.472636e-01	ci left: 2.046648e-03	ci right 2.374971e-03	k: 706	n:320000
Cons ci ratio: 7.689312e-02	ci left: 7.746354e-03	ci right 8.368855e-03	k: 2577	n:320000
KS ci ratio: 3.876099e-02	ci left: 3.037123e-02	ci right 3.157479e-02	k: 9910	n:320000
TAF1L   320000 perm   140 sec   (2279 perm/sec)   p_kst 3.096875e-02   p_cons 8.053125e-03   p_joint 2.206250e-03

Joint ci ratio: 1.453245e-01	ci left: 2.040096e-03	ci right 2.362685e-03	k: 725	n:330000
Cons ci ratio: 7.569848e-02	ci left: 7.755361e-03	ci right 8.368477e-03	k: 2659	n:330000
KS ci ratio: 3.818214e-02	ci left: 3.036023e-02	ci right 3.154499e-02	k: 10213	n:330000
TAF1L   330000 perm   147 sec   (2248 perm/sec)   p_kst 3.094848e-02   p_cons 8.057576e-03   p_joint 2.196970e-03

Joint ci ratio: 1.461383e-01	ci left: 1.957416e-03	ci right 2.268815e-03	k: 717	n:340000
Cons ci ratio: 7.462648e-02	ci left: 7.749475e-03	ci right 8.353073e-03	k: 2736	n:340000
KS ci ratio: 3.762663e-02	ci left: 3.035292e-02	ci right 3.151979e-02	k: 10517	n:340000
TAF1L   340000 perm   153 sec   (2221 perm/sec)   p_kst 3.093235e-02   p_cons 8.047059e-03   p_joint 2.108824e-03

Joint ci ratio: 1.451335e-01	ci left: 1.929018e-03	ci right 2.233606e-03	k: 727	n:350000
Cons ci ratio: 7.373094e-02	ci left: 7.715934e-03	ci right 8.309398e-03	k: 2803	n:350000
KS ci ratio: 3.703468e-02	ci left: 3.044242e-02	ci right 3.159393e-02	k: 10855	n:350000
TAF1L   350000 perm   159 sec   (2195 perm/sec)   p_kst 3.101429e-02   p_cons 8.008571e-03   p_joint 2.077143e-03

Joint ci ratio: 1.452377e-01	ci left: 1.872753e-03	ci right 2.168688e-03	k: 726	n:360000
Cons ci ratio: 7.271385e-02	ci left: 7.717029e-03	ci right 8.302043e-03	k: 2882	n:360000
KS ci ratio: 3.651192e-02	ci left: 3.045825e-02	ci right 3.159376e-02	k: 11168	n:360000
TAF1L   360000 perm   167 sec   (2159 perm/sec)   p_kst 3.102222e-02   p_cons 8.005556e-03   p_joint 2.016667e-03

Joint ci ratio: 1.514187e-01	ci left: 1.671183e-03	ci right 1.947523e-03	k: 668	n:370000
Cons ci ratio: 7.179884e-02	ci left: 7.704845e-03	ci right 8.281279e-03	k: 2956	n:370000
KS ci ratio: 3.603174e-02	ci left: 3.043851e-02	ci right 3.155804e-02	k: 11468	n:370000
TAF1L   370000 perm   174 sec   (2131 perm/sec)   p_kst 3.099459e-02   p_cons 7.989189e-03   p_joint 1.805405e-03

Joint ci ratio: 1.487724e-01	ci left: 1.687992e-03	ci right 1.961800e-03	k: 692	n:380000
Cons ci ratio: 7.091752e-02	ci left: 7.693346e-03	ci right 8.261564e-03	k: 3030	n:380000
KS ci ratio: 3.553887e-02	ci left: 3.047207e-02	ci right 3.157720e-02	k: 11788	n:380000
TAF1L   380000 perm   180 sec   (2106 perm/sec)   p_kst 3.102105e-02   p_cons 7.973684e-03   p_joint 1.821053e-03

Joint ci ratio: 1.346259e-01	ci left: 2.023166e-03	ci right 2.317642e-03	k: 845	n:390000
Cons ci ratio: 7.013622e-02	ci left: 7.667361e-03	ci right 8.227166e-03	k: 3098	n:390000
KS ci ratio: 3.506121e-02	ci left: 3.051164e-02	ci right 3.160303e-02	k: 12111	n:390000
TAF1L   390000 perm   187 sec   (2089 perm/sec)   p_kst 3.105385e-02   p_cons 7.943590e-03   p_joint 2.166667e-03

Joint ci ratio: 1.343118e-01	ci left: 1.982248e-03	ci right 2.270041e-03	k: 849	n:400000
Cons ci ratio: 6.924806e-02	ci left: 7.672192e-03	ci right 8.224971e-03	k: 3178	n:400000
KS ci ratio: 3.466709e-02	ci left: 3.043777e-02	ci right 3.151404e-02	k: 12389	n:400000
TAF1L   400000 perm   193 sec   (2070 perm/sec)   p_kst 3.097250e-02   p_cons 7.945000e-03   p_joint 2.122500e-03

Joint ci ratio: 1.327592e-01	ci left: 1.981051e-03	ci right 2.265083e-03	k: 869	n:410000
Cons ci ratio: 6.843515e-02	ci left: 7.667240e-03	ci right 8.212920e-03	k: 3254	n:410000
KS ci ratio: 3.426225e-02	ci left: 3.040869e-02	ci right 3.147112e-02	k: 12684	n:410000
TAF1L   410000 perm   200 sec   (2053 perm/sec)   p_kst 3.093659e-02   p_cons 7.936585e-03   p_joint 2.119512e-03

Joint ci ratio: 1.301646e-01	ci left: 2.014478e-03	ci right 2.297222e-03	k: 904	n:420000
Cons ci ratio: 6.752772e-02	ci left: 7.690651e-03	ci right 8.230456e-03	k: 3342	n:420000
KS ci ratio: 3.384034e-02	ci left: 3.043538e-02	ci right 3.148539e-02	k: 13002	n:420000
TAF1L   420000 perm   206 sec   (2037 perm/sec)   p_kst 3.095714e-02   p_cons 7.957143e-03   p_joint 2.152381e-03

Joint ci ratio: 1.286803e-01	ci left: 2.014886e-03	ci right 2.294216e-03	k: 925	n:430000
Cons ci ratio: 6.689169e-02	ci left: 7.658130e-03	ci right 8.190393e-03	k: 3406	n:430000
KS ci ratio: 3.346347e-02	ci left: 3.040784e-02	ci right 3.144500e-02	k: 13297	n:430000
TAF1L   430000 perm   213 sec   (2023 perm/sec)   p_kst 3.092326e-02   p_cons 7.920930e-03   p_joint 2.151163e-03

Joint ci ratio: 1.158988e-01	ci left: 2.442852e-03	ci right 2.745576e-03	k: 1140	n:440000
Cons ci ratio: 6.618685e-02	ci left: 7.647229e-03	ci right 8.172918e-03	k: 3479	n:440000
KS ci ratio: 3.306755e-02	ci left: 3.043799e-02	ci right 3.146366e-02	k: 13617	n:440000
TAF1L   440000 perm   219 sec   (2008 perm/sec)   p_kst 3.094773e-02   p_cons 7.906818e-03   p_joint 2.590909e-03

Joint ci ratio: 1.155978e-01	ci left: 2.401510e-03	ci right 2.698286e-03	k: 1146	n:450000
Cons ci ratio: 6.546669e-02	ci left: 7.645585e-03	ci right 8.165226e-03	k: 3556	n:450000
KS ci ratio: 3.270352e-02	ci left: 3.043379e-02	ci right 3.144782e-02	k: 13922	n:450000
TAF1L   450000 perm   226 sec   (1994 perm/sec)   p_kst 3.093778e-02   p_cons 7.902222e-03   p_joint 2.546667e-03

Joint ci ratio: 1.129185e-01	ci left: 2.465457e-03	ci right 2.762603e-03	k: 1201	n:460000
Cons ci ratio: 6.469781e-02	ci left: 7.661154e-03	ci right 8.175508e-03	k: 3641	n:460000
KS ci ratio: 3.233133e-02	ci left: 3.046650e-02	ci right 3.146985e-02	k: 14244	n:460000
TAF1L   460000 perm   232 sec   (1979 perm/sec)   p_kst 3.096522e-02   p_cons 7.915217e-03   p_joint 2.610870e-03

Joint ci ratio: 1.043488e-01	ci left: 2.837364e-03	ci right 3.151791e-03	k: 1406	n:470000
Cons ci ratio: 6.386046e-02	ci left: 7.699128e-03	ci right 8.209094e-03	k: 3737	n:470000
KS ci ratio: 3.195685e-02	ci left: 3.052533e-02	ci right 3.151876e-02	k: 14579	n:470000
TAF1L   470000 perm   241 sec   (1954 perm/sec)   p_kst 3.101915e-02   p_cons 7.951064e-03   p_joint 2.991489e-03

Joint ci ratio: 1.048013e-01	ci left: 2.753900e-03	ci right 3.060482e-03	k: 1394	n:480000
Cons ci ratio: 6.322959e-02	ci left: 7.692496e-03	ci right 8.196804e-03	k: 3812	n:480000
KS ci ratio: 3.162574e-02	ci left: 3.052389e-02	ci right 3.150679e-02	k: 14886	n:480000
TAF1L   480000 perm   247 sec   (1940 perm/sec)   p_kst 3.101250e-02   p_cons 7.941667e-03   p_joint 2.904167e-03

Joint ci ratio: 1.039485e-01	ci left: 2.743411e-03	ci right 3.046188e-03	k: 1417	n:490000
Cons ci ratio: 6.267395e-02	ci left: 7.672094e-03	ci right 8.170485e-03	k: 3880	n:490000
KS ci ratio: 3.131215e-02	ci left: 3.050837e-02	ci right 3.148086e-02	k: 15186	n:490000
TAF1L   490000 perm   255 sec   (1919 perm/sec)   p_kst 3.099184e-02   p_cons 7.918367e-03   p_joint 2.891837e-03

Joint ci ratio: 1.036952e-01	ci left: 2.702176e-03	ci right 2.999631e-03	k: 1424	n:500000
Cons ci ratio: 6.206936e-02	ci left: 7.668281e-03	ci right 8.161446e-03	k: 3956	n:500000
KS ci ratio: 3.100875e-02	ci left: 3.049154e-02	ci right 3.145390e-02	k: 15485	n:500000
TAF1L   500000 perm   264 sec   (1897 perm/sec)   p_kst 3.097000e-02   p_cons 7.912000e-03   p_joint 2.848000e-03

Joint ci ratio: 1.021986e-01	ci left: 2.729427e-03	ci right 3.025285e-03	k: 1466	n:510000
Cons ci ratio: 6.152039e-02	ci left: 7.654986e-03	ci right 8.142787e-03	k: 4027	n:510000
KS ci ratio: 3.072203e-02	ci left: 3.045984e-02	ci right 3.141216e-02	k: 15776	n:510000
TAF1L   510000 perm   271 sec   (1883 perm/sec)   p_kst 3.093333e-02   p_cons 7.896078e-03   p_joint 2.874510e-03

Joint ci ratio: 1.025879e-01	ci left: 2.656320e-03	ci right 2.945417e-03	k: 1455	n:520000
Cons ci ratio: 6.103077e-02	ci left: 7.630856e-03	ci right 8.113113e-03	k: 4092	n:520000
KS ci ratio: 3.042065e-02	ci left: 3.047331e-02	ci right 3.141654e-02	k: 16090	n:520000
TAF1L   520000 perm   279 sec   (1863 perm/sec)   p_kst 3.094231e-02   p_cons 7.869231e-03   p_joint 2.798077e-03

Joint ci ratio: 1.012739e-01	ci left: 2.676073e-03	ci right 2.963367e-03	k: 1493	n:530000
Cons ci ratio: 6.033366e-02	ci left: 7.663407e-03	ci right 8.141996e-03	k: 4187	n:530000
KS ci ratio: 3.013082e-02	ci left: 3.048069e-02	ci right 3.141501e-02	k: 16401	n:530000
TAF1L   530000 perm   287 sec   (1844 perm/sec)   p_kst 3.094528e-02   p_cons 7.900000e-03   p_joint 2.816981e-03

Joint ci ratio: 1.011747e-01	ci left: 2.631928e-03	ci right 2.914190e-03	k: 1496	n:540000
Cons ci ratio: 5.980079e-02	ci left: 7.658294e-03	ci right 8.132193e-03	k: 4262	n:540000
KS ci ratio: 2.985558e-02	ci left: 3.047498e-02	ci right 3.140043e-02	k: 16705	n:540000
TAF1L   540000 perm   295 sec   (1831 perm/sec)   p_kst 3.093519e-02   p_cons 7.892593e-03   p_joint 2.770370e-03

Joint ci ratio: 1.003075e-01	ci left: 2.630156e-03	ci right 2.909668e-03	k: 1522	n:550000
Cons ci ratio: 5.932317e-02	ci left: 7.642637e-03	ci right 8.111660e-03	k: 4331	n:550000
KS ci ratio: 2.957339e-02	ci left: 3.049839e-02	ci right 3.141565e-02	k: 17025	n:550000
TAF1L   550000 perm   303 sec   (1815 perm/sec)   p_kst 3.095455e-02   p_cons 7.874545e-03   p_joint 2.767273e-03

Joint ci ratio: 9.975332e-02	ci left: 2.612786e-03	ci right 2.888827e-03	k: 1539	n:560000
Cons ci ratio: 5.885681e-02	ci left: 7.627553e-03	ci right 8.091846e-03	k: 4400	n:560000
KS ci ratio: 2.934272e-02	ci left: 3.043235e-02	ci right 3.134037e-02	k: 17295	n:560000
TAF1L   560000 perm   311 sec   (1803 perm/sec)   p_kst 3.088393e-02   p_cons 7.857143e-03   p_joint 2.748214e-03

Outputting figure to mutsig2_images.part000000000170/TAF1L.3_5485_560000_0.030884_0.0078571_0.0027482.png
                gene_name: TAF1L
               theta_stop: 0.100 
                    nperm: 560000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.0079 
      ci_cons_bounds_left: 0.0076 
     ci_cons_bounds_right: 0.0081 
                  p_joint: 0.0027 
     ci_joint_bounds_left: 0.0026 
    ci_joint_bounds_right: 0.0029 

Current progress: 50 percent done.
SYK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.474909e-02	ci left: 4.243561e-01	ci right 4.438824e-01	k: 4341	n:10000
KS ci ratio: 2.440207e-02	ci left: 7.117931e-01	ci right 7.294782e-01	k: 7207	n:10000
SYK   10000 perm   2 sec   (5072 perm/sec)   p_kst 7.207000e-01   p_cons 4.341000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000170/SYK.2_1960_10000_0.7207_0.4341_1.png
                gene_name: SYK
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
SYNE2
Processing conservation and coverage...
47% 94% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.761010e-02	ci left: 8.246276e-01	ci right 8.393784e-01	k: 8321	n:10000
Cons ci ratio: 6.490955e-03	ci left: 9.700550e-01	ci right 9.764653e-01	k: 9734	n:10000
KS ci ratio: 5.841444e-02	ci left: 3.013384e-01	ci right 3.195722e-01	k: 3104	n:10000
SYNE2   10000 perm   6 sec   (1817 perm/sec)   p_kst 3.104000e-01   p_cons 9.734000e-01   p_joint 8.321000e-01

Outputting figure to mutsig2_images.part000000000170/SYNE2.2_21229_10000_0.3104_0.9734_0.8321.png
                gene_name: SYNE2
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000170
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 170 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1649>
Subject: Job 9878260: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1649>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000171> was used as the working directory.
Started at Fri Oct  5 22:59:17 2012
Results reported at Fri Oct  5 23:00:53 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000171.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000171.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 171  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000171.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     97.39 sec.
    Max Memory :      1134 MB
    Max Swap   :      3928 MB

    Max Processes  :         7
    Max Threads    :        55

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
171
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 171
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 171: processing genes 15415 - 15505
Calculating significance of each gene.
Using projection method.
15415	TAF3	1
15416	TAF4	1
15417	TAF4B	1
15418	TAF5	1
15419	TAF5L	1
15420	TAF6	1
15421	TAF6L	1
15422	TAF7	1
15423	TAF7L	1
15424	TAF8	1.036919e-01
15425	TAF9	1
15426	TAF9B	1
15427	TAGAP	1
15428	TAGLN	1
15429	TAGLN2	1
15430	TAGLN3	1
15431	TAL1	1
15432	TAL2	5.546747e-04
15433	TALDO1	8.648823e-02
15434	TANC1	4.161604e-01
15435	TANC2	1
15436	TANK	1
15437	TAOK1	2.254929e-01
15438	TAOK2	3.263041e-01
15439	TAOK3	1
15440	TAP1	2.437129e-01
15441	TAP2	1
15442	TAPBP	1
15443	TAPBPL	1
15444	TAPT1	1
15445	TARBP1	1
15446	TARBP2	1
15447	TARDBP	1
15448	TARP	1
15449	TARS	1
15450	TARS2	1
15451	TARSL2	1
15452	TAS1R1	1
15453	TAS1R2	1
15454	TAS1R3	1
15455	TAS2R1	1
15456	TAS2R10	1
15457	TAS2R13	1
15458	TAS2R14	1
15459	TAS2R16	1
15460	TAS2R19	1
15461	TAS2R20	1
15462	TAS2R3	1
15463	TAS2R30	1
15464	TAS2R31	1
15465	TAS2R38	1
15466	TAS2R39	9.257258e-02
15467	TAS2R4	1
15468	TAS2R40	1
15469	TAS2R41	1
15470	TAS2R42	1
15471	TAS2R43	6.366839e-02
15472	TAS2R46	1
15473	TAS2R5	1
15474	TAS2R50	1
15475	TAS2R60	1
15476	TAS2R7	1
15477	TAS2R8	1
15478	TAS2R9	1
15479	TASP1	1
15480	TAT	1
15481	TATDN1	1
15482	TATDN2	1
15483	TATDN3	1
15484	TAX1BP1	1
15485	TAX1BP3	1
15486	TAZ	1
15487	TBC1D1	1
15488	TBC1D10A	1
15489	TBC1D10B	1
15490	TBC1D10C	1
15491	TBC1D12	1
15492	TBC1D13	2.763342e-02
15493	TBC1D14	1
15494	TBC1D15	1.494823e-01
15495	TBC1D16	1
15496	TBC1D17	1
15497	TBC1D19	1
15498	TBC1D2	4.607469e-02
15499	TBC1D20	1
15500	TBC1D21	1
15501	TBC1D22A	1.474348e-01
15502	TBC1D22B	1
15503	TBC1D23	1
15504	TBC1D24	1
15505	TBC1D25	1
Done

Running MutSig 2:
Scatter job 171: processing genes 15415 - 15505
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TAL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.885079e-02	ci left: 4.945505e-01	ci right 5.142470e-01	k: 5044	n:10000
KS ci ratio: 1.462208e-02	ci left: 8.713228e-01	ci right 8.842562e-01	k: 8779	n:10000
TAL2   10000 perm   2 sec   (6520 perm/sec)   p_kst 8.779000e-01   p_cons 5.044000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000171/TAL2.2_331_10000_0.8779_0.5044_1.png
                gene_name: TAL2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
TBC1D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.027334e-02	ci left: 9.308177e-01	ci right 9.405266e-01	k: 9358	n:10000
KS ci ratio: 9.035409e-02	ci left: 1.511960e-01	ci right 1.656036e-01	k: 1583	n:10000
TBC1D2   10000 perm   2 sec   (5359 perm/sec)   p_kst 1.583000e-01   p_cons 9.358000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000171/TBC1D2.2_2806_10000_0.1583_0.9358_1.png
                gene_name: TBC1D2
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000171
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 171 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1701>
Subject: Job 9878262: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1701>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000172> was used as the working directory.
Started at Fri Oct  5 22:59:49 2012
Results reported at Fri Oct  5 23:01:51 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000172.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000172.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 172  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000172.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    117.91 sec.
    Max Memory :      1902 MB
    Max Swap   :      4636 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
172
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 172
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 172: processing genes 15506 - 15595
Calculating significance of each gene.
Using projection method.
15506	TBC1D26	1
15507	TBC1D28	1
15508	TBC1D29	3.149361e-04
15509	TBC1D2B	1.994703e-01
15510	TBC1D3B	1
15511	TBC1D4	1
15512	TBC1D5	1
15513	TBC1D7	1
15514	TBC1D8	1
15515	TBC1D8B	1.786751e-01
15516	TBC1D9	2.716623e-01
15517	TBC1D9B	1
15518	TBCA	1
15519	TBCB	1
15520	TBCC	1
15521	TBCCD1	1
15522	TBCD	1
15523	TBCE	1
15524	TBCEL	1
15525	TBCK	2.225120e-01
15526	TBK1	1
15527	TBKBP1	1
15528	TBL1X	1
15529	TBL1XR1	4.611729e-03
15530	TBL1Y	1
15531	TBL2	1
15532	TBL3	1
15533	TBP	1
15534	TBPL1	1
15535	TBPL2	1
15536	TBR1	1
15537	TBRG1	1
15538	TBRG4	1
15539	TBX1	1
15540	TBX10	1
15541	TBX15	1
15542	TBX18	4.049604e-04
15543	TBX19	1.417296e-01
15544	TBX2	1
15545	TBX20	1
15546	TBX21	1
15547	TBX22	1
15548	TBX3	4.099544e-03
15549	TBX4	1
15550	TBX5	2.001335e-02
15551	TBX6	1
15552	TBXA2R	4.434168e-03
15553	TBXAS1	1
15554	TC2N	1
15555	TCAP	1
15556	TCEA1	1
15557	TCEA2	1
15558	TCEA3	1
15559	TCEAL1	1
15560	TCEAL2	1
15561	TCEAL3	1
15562	TCEAL4	1
15563	TCEAL5	1
15564	TCEAL6	2.524493e-02
15565	TCEAL7	1
15566	TCEAL8	1
15567	TCEANC	1
15568	TCEB1	1
15569	TCEB2	2.631440e-02
15570	TCEB3	2.017976e-01
15571	TCEB3B	1
15572	TCEB3C	1
In gene TCERG1 the following bins exceed PROBCAP:
    PRAD-G9-6336	categ 6	N = 3385    n = 1	mu =   3.33e-08
15573	TCERG1	6.672447e-02
15574	TCERG1L	1
15575	TCF12	1
15576	TCF19	6.177596e-02
15577	TCF20	1
15578	TCF21	1
15579	TCF23	1
15580	TCF25	1
15581	TCF3	1
15582	TCF4	1
15583	TCF7	1
15584	TCF7L1	1
In gene TCF7L2 the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 1982    n = 1	mu =   9.08e-07
15585	TCF7L2	2.259045e-01
15586	TCFL5	1
15587	TCHH	3.164427e-01
15588	TCHHL1	1
15589	TCHP	1
15590	TCIRG1	1
15591	TCL1A	1
15592	TCL1B	1
15593	TCN1	1.811220e-02
15594	TCN2	1.279871e-01
15595	TCOF1	1
Done

Running MutSig 2:
Scatter job 172: processing genes 15506 - 15595
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TBX18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.933874e-03	ci left: 9.462737e-01	ci right 9.548614e-01	k: 9507	n:10000
Cons ci ratio: 3.867250e-02	ci left: 4.968503e-01	ci right 5.165458e-01	k: 5067	n:10000
KS ci ratio: 6.796773e-03	ci left: 9.674153e-01	ci right 9.741067e-01	k: 9709	n:10000
TBX18   10000 perm   2 sec   (5319 perm/sec)   p_kst 9.709000e-01   p_cons 5.067000e-01   p_joint 9.507000e-01

Outputting figure to mutsig2_images.part000000000172/TBX18.3_1856_10000_0.9709_0.5067_0.9507.png
                gene_name: TBX18
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.95 

Current progress: 17 percent done.
TBC1D29
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.312124e-02	ci left: 8.932351e-01	ci right 9.051312e-01	k: 8993	n:10000
Cons ci ratio: 2.637809e-02	ci left: 6.849172e-01	ci right 7.033299e-01	k: 6753	n:9728
KS ci ratio: 7.134047e-02	ci left: 2.235583e-01	ci right 2.401981e-01	k: 2318	n:10000
TBC1D29   10000 perm   2 sec   (6651 perm/sec)   p_kst 2.318000e-01   p_cons 6.941817e-01   p_joint 8.993000e-01

Outputting figure to mutsig2_images.part000000000172/TBC1D29.2_473_10000_0.2318_0.69418_0.8993.png
                gene_name: TBC1D29
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 33 percent done.
TBL1XR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.480136e-03	ci left: 9.847992e-01	ci right 9.893104e-01	k: 9872	n:10000
Cons ci ratio: 3.071196e-02	ci left: 6.100009e-01	ci right 6.291294e-01	k: 6196	n:10000
KS ci ratio: 3.558940e-02	ci left: 5.382828e-01	ci right 5.578892e-01	k: 5481	n:10000
TBL1XR1   10000 perm   2 sec   (6269 perm/sec)   p_kst 5.481000e-01   p_cons 6.196000e-01   p_joint 9.872000e-01

Outputting figure to mutsig2_images.part000000000172/TBL1XR1.2_1601_10000_0.5481_0.6196_0.9872.png
                gene_name: TBL1XR1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 50 percent done.
TBX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.355520e-02	ci left: 7.259294e-01	ci right 7.433338e-01	k: 7347	n:10000
Cons ci ratio: 4.682149e-02	ci left: 4.023300e-01	ci right 4.217213e-01	k: 4120	n:10000
KS ci ratio: 3.592830e-02	ci left: 5.335757e-01	ci right 5.531990e-01	k: 5434	n:10000
TBX3   10000 perm   2 sec   (5509 perm/sec)   p_kst 5.434000e-01   p_cons 4.120000e-01   p_joint 7.347000e-01

Outputting figure to mutsig2_images.part000000000172/TBX3.2_2264_10000_0.5434_0.412_0.7347.png
                gene_name: TBX3
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 67 percent done.
TBX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.331969e-02	ci left: 7.298693e-01	ci right 7.471916e-01	k: 7386	n:10000
KS ci ratio: 4.498665e-02	ci left: 4.217637e-01	ci right 4.412762e-01	k: 4315	n:10000
TBX5   10000 perm   2 sec   (6122 perm/sec)   p_kst 4.315000e-01   p_cons 7.386000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000172/TBX5.2_1656_10000_0.4315_0.7386_1.png
                gene_name: TBX5
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
TBXA2R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.119552e-02	ci left: 3.600290e-01	ci right 3.790471e-01	k: 3695	n:10000
KS ci ratio: 6.002142e-02	ci left: 2.899374e-01	ci right 3.079799e-01	k: 2989	n:10000
TBXA2R   10000 perm   2 sec   (5907 perm/sec)   p_kst 2.989000e-01   p_cons 3.695000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000172/TBXA2R.2_1285_10000_0.2989_0.3695_1.png
                gene_name: TBXA2R
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000172
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 172 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1705>
Subject: Job 9878263: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1705>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000173> was used as the working directory.
Started at Fri Oct  5 22:59:49 2012
Results reported at Fri Oct  5 23:01:54 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000173.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000173.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 173  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000173.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    109.91 sec.
    Max Memory :      2031 MB
    Max Swap   :      4711 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
173
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 173
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 173: processing genes 15596 - 15686
Calculating significance of each gene.
Using projection method.
15596	TCP1	1
15597	TCP10	1
15598	TCP10L	1
15599	TCP10L2	1
15600	TCP11	1
15601	TCP11L1	1
15602	TCP11L2	1
15603	TCTA	1
15604	TCTE1	1
15605	TCTE3	1
15606	TCTEX1D1	1
15607	TCTEX1D2	1
15608	TCTEX1D4	1
15609	TCTN1	1
In gene TCTN2 the following bins exceed PROBCAP:
    PRAD-CH-5745	categ 6	N = 2166    n = 1	mu =   1.32e-07
15610	TCTN2	4.195244e-02
15611	TCTN3	1
15612	TDG	1
15613	TDGF1	1
15614	TDO2	2.006126e-02
15615	TDP1	1
15616	TDP2	1
15617	TDRD1	3.243070e-01
15618	TDRD10	1
15619	TDRD3	1
15620	TDRD5	1
15621	TDRD6	1
15622	TDRD7	1
15623	TDRD9	1
15624	TDRKH	1.545144e-01
15625	TEAD1	1
15626	TEAD2	1
15627	TEAD3	1.362664e-01
15628	TEAD4	1
15629	TEC	1
15630	TECPR1	2.471052e-01
15631	TECPR2	2.580425e-01
15632	TECR	1
15633	TECRL	1
15634	TECTA	1
15635	TECTB	1
15636	TEDDM1	1
15637	TEF	1
15638	TEK	1
15639	TEKT1	3.452345e-02
15640	TEKT2	1
15641	TEKT3	1
15642	TEKT4	1
15643	TEKT5	1
15644	TELO2	1
15645	TENC1	1
15646	TEP1	1
15647	TEPP	1
15648	TERF1	1
15649	TERF2	1
15650	TERF2IP	1
15651	TERT	1
15652	TES	1
15653	TESC	1
15654	TESK1	1
15655	TESK2	1
15656	TET1	1
15657	TET2	1
15658	TET3	1
15659	TEX10	1
15660	TEX101	1
15661	TEX11	1.549124e-01
15662	TEX12	1
15663	TEX13A	9.425850e-02
15664	TEX13B	7.562295e-02
15665	TEX14	1
15666	TEX15	1
15667	TEX19	1
15668	TEX2	1
15669	TEX261	1
15670	TEX264	1
15671	TEX9	1
15672	TF	1
15673	TFAM	4.749049e-02
15674	TFAP2A	1
15675	TFAP2B	1
15676	TFAP2C	1
15677	TFAP2D	1.068610e-02
15678	TFAP2E	1
15679	TFAP4	1
15680	TFB1M	1
15681	TFB2M	4.649538e-03
15682	TFCP2	1
15683	TFCP2L1	1
15684	TFDP1	1
15685	TFDP2	1
15686	TFDP3	1
Done

Running MutSig 2:
Scatter job 173: processing genes 15596 - 15686
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TFAP2D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.274675e-02	ci left: 3.463103e-01	ci right 3.651738e-01	k: 3557	n:10000
Cons ci ratio: 2.353104e-02	ci left: 7.263334e-01	ci right 7.437295e-01	k: 7351	n:10000
KS ci ratio: 1.558433e-01	ci left: 5.484605e-02	ci right 6.421259e-02	k: 594	n:10000
TFAP2D   10000 perm   2 sec   (5586 perm/sec)   p_kst 5.940000e-02   p_cons 7.351000e-01   p_joint 3.557000e-01

Joint ci ratio: 3.696625e-02	ci left: 3.531940e-01	ci right 3.665467e-01	k: 7197	n:20000
Cons ci ratio: 1.655805e-02	ci left: 7.308392e-01	ci right 7.430918e-01	k: 14740	n:20000
KS ci ratio: 1.109958e-01	ci left: 5.543290e-02	ci right 6.199612e-02	k: 1173	n:20000
TFAP2D   20000 perm   8 sec   (2633 perm/sec)   p_kst 5.865000e-02   p_cons 7.370000e-01   p_joint 3.598500e-01

Joint ci ratio: 5.635030e-02	ci left: 1.349720e-01	ci right 1.428314e-01	k: 4166	n:30000
Cons ci ratio: 1.363476e-02	ci left: 7.286590e-01	ci right 7.386957e-01	k: 22011	n:30000
KS ci ratio: 9.148691e-02	ci left: 5.502246e-02	ci right 6.033028e-02	k: 1729	n:30000
TFAP2D   30000 perm   10 sec   (3051 perm/sec)   p_kst 5.763333e-02   p_cons 7.337000e-01   p_joint 1.388667e-01

Outputting figure to mutsig2_images.part000000000173/TFAP2D.2_1391_30000_0.057633_0.7337_0.13887.png
                gene_name: TFAP2D
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.058 
        ci_ks_bounds_left: 0.055 
       ci_ks_bounds_right: 0.060 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 50 percent done.
TFB2M
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.213094e-02	ci left: 7.497846e-01	ci right 7.666647e-01	k: 7583	n:10000
Cons ci ratio: 1.271204e-02	ci left: 8.989819e-01	ci right 9.105811e-01	k: 9049	n:10000
KS ci ratio: 6.749929e-02	ci left: 2.436126e-01	ci right 2.607320e-01	k: 2521	n:10000
TFB2M   10000 perm   2 sec   (5865 perm/sec)   p_kst 2.521000e-01   p_cons 9.049000e-01   p_joint 7.583000e-01

Outputting figure to mutsig2_images.part000000000173/TFB2M.2_1223_10000_0.2521_0.9049_0.7583.png
                gene_name: TFB2M
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000173
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 173 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1730>
Subject: Job 9878264: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1730>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000174> was used as the working directory.
Started at Fri Oct  5 22:59:49 2012
Results reported at Sat Oct  6 01:45:26 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000174.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000174.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 174  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000174.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   9972.67 sec.
    Max Memory :      2005 MB
    Max Swap   :      4682 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
174
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 174
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 174: processing genes 15687 - 15777
Calculating significance of each gene.
Using projection method.
15687	TFE3	1
15688	TFEB	1
15689	TFEC	1
15690	TFF1	1
15691	TFF2	1
15692	TFF3	1
15693	TFG	1
15694	TFIP11	1
15695	TFPI	1
15696	TFPI2	1
15697	TFPT	1
15698	TFR2	1
15699	TFRC	1
15700	TG	1
15701	TGDS	1
15702	TGFA	1
15703	TGFB1	1
15704	TGFB1I1	1
15705	TGFB2	1
15706	TGFB3	1
15707	TGFBI	1
15708	TGFBR1	1.105392e-01
15709	TGFBR2	1
15710	TGFBR3	1
15711	TGFBRAP1	1
15712	TGIF1	1
15713	TGIF2	1
15714	TGIF2LX	1
15715	TGIF2LY	1
15716	TGM1	1
15717	TGM2	2.111853e-01
15718	TGM3	1
15719	TGM4	1
15720	TGM5	1
15721	TGM6	1
15722	TGM7	1.573803e-01
15723	TGOLN2	6.631633e-02
15724	TGS1	1
15725	TH	1
15726	TH1L	1.511684e-01
15727	THADA	1
15728	THAP1	1
15729	THAP10	1
15730	THAP11	1
15731	THAP2	1
15732	THAP3	1
15733	THAP4	1
15734	THAP5	1
15735	THAP6	1
15736	THAP7	1
15737	THAP8	1
15738	THAP9	1.585871e-01
15739	THBD	1
15740	THBS1	2.562634e-01
15741	THBS2	1
15742	THBS3	1
15743	THBS4	1
15744	THEG	1
15745	THEM4	1
15746	THEM5	1
15747	THEMIS	1
15748	THG1L	1
15749	THNSL1	1
15750	THNSL2	1
15751	THOC1	1
15752	THOC2	1
15753	THOC3	1
15754	THOC4	1
15755	THOC5	1
15756	THOC6	1
15757	THOC7	1
15758	THOP1	1
15759	THPO	1
15760	THRA	1
15761	THRAP3	1
15762	THRB	1
15763	THRSP	1
15764	THSD1	1
15765	THSD4	3.011027e-01
15766	THSD7A	1
15767	THSD7B	8.064284e-02
15768	THTPA	2.699754e-02
15769	THUMPD1	1
15770	THUMPD2	1
15771	THUMPD3	1
15772	THY1	1
15773	THYN1	1
15774	TIA1	1
15775	TIAF1	1
15776	TIAL1	1
15777	TIAM1	1
Done

Running MutSig 2:
Scatter job 174: processing genes 15687 - 15777
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
THSD7B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.090336e-01	ci left: 7.243098e-03	ci right 1.105110e-02	k: 90	n:10000
Cons ci ratio: 4.658079e-02	ci left: 4.048206e-01	ci right 4.242292e-01	k: 4145	n:10000
KS ci ratio: 1.959510e+00	ci left: 6.187149e-05	ci right 8.764745e-04	k: 3	n:10000
THSD7B   10000 perm   2 sec   (5972 perm/sec)   p_kst 3.000000e-04   p_cons 4.145000e-01   p_joint 9.000000e-03

Joint ci ratio: 1.385617e+00	ci left: 1.407294e-04	ci right 7.210000e-04	k: 7	n:20000
Cons ci ratio: 3.317245e-02	ci left: 4.042692e-01	ci right 4.179566e-01	k: 8222	n:20000
KS ci ratio: 1.752814e+00	ci left: 5.449587e-05	ci right 5.119995e-04	k: 4	n:20000
THSD7B   20000 perm   6 sec   (3441 perm/sec)   p_kst 2.000000e-04   p_cons 4.111000e-01   p_joint 3.500000e-04

Joint ci ratio: 1.181688e+00	ci left: 1.598575e-04	ci right 6.129261e-04	k: 10	n:30000
Cons ci ratio: 2.697633e-02	ci left: 4.074869e-01	ci right 4.186633e-01	k: 12392	n:30000
KS ci ratio: 1.481423e+00	ci left: 7.339990e-05	ci right 4.352646e-04	k: 6	n:30000
THSD7B   30000 perm   8 sec   (3820 perm/sec)   p_kst 2.000000e-04   p_cons 4.130667e-01   p_joint 3.333333e-04

Joint ci ratio: 1.047468e+00	ci left: 1.730598e-04	ci right 5.556958e-04	k: 13	n:40000
Cons ci ratio: 2.341522e-02	ci left: 4.071457e-01	ci right 4.168171e-01	k: 16479	n:40000
KS ci ratio: 1.131423e+00	ci left: 1.372867e-04	ci right 4.919976e-04	k: 11	n:40000
THSD7B   40000 perm   10 sec   (4002 perm/sec)   p_kst 2.750000e-04   p_cons 4.119750e-01   p_joint 3.250000e-04

Joint ci ratio: 1.011978e+00	ci left: 1.530868e-04	ci right 4.697478e-04	k: 14	n:50000
Cons ci ratio: 2.096655e-02	ci left: 4.071219e-01	ci right 4.157684e-01	k: 20572	n:50000
KS ci ratio: 1.087060e+00	ci left: 1.240175e-04	ci right 4.191941e-04	k: 12	n:50000
THSD7B   50000 perm   12 sec   (4086 perm/sec)   p_kst 2.400000e-04   p_cons 4.114400e-01   p_joint 2.800000e-04

Joint ci ratio: 9.798612e-01	ci left: 1.399296e-04	ci right 4.123035e-04	k: 15	n:60000
Cons ci ratio: 1.912565e-02	ci left: 4.078580e-01	ci right 4.157505e-01	k: 24708	n:60000
KS ci ratio: 9.798612e-01	ci left: 1.399296e-04	ci right 4.123035e-04	k: 15	n:60000
THSD7B   60000 perm   15 sec   (4133 perm/sec)   p_kst 2.500000e-04   p_cons 4.118000e-01   p_joint 2.500000e-04

Joint ci ratio: 8.991812e-01	ci left: 1.524060e-04	ci right 4.063662e-04	k: 18	n:70000
Cons ci ratio: 1.769134e-02	ci left: 4.085787e-01	ci right 4.158858e-01	k: 28856	n:70000
KS ci ratio: 8.991812e-01	ci left: 1.524060e-04	ci right 4.063662e-04	k: 18	n:70000
THSD7B   70000 perm   17 sec   (4149 perm/sec)   p_kst 2.571429e-04   p_cons 4.122286e-01   p_joint 2.571429e-04

Joint ci ratio: 8.764236e-01	ci left: 1.429964e-04	ci right 3.708609e-04	k: 19	n:80000
Cons ci ratio: 1.649992e-02	ci left: 4.102467e-01	ci right 4.170845e-01	k: 33093	n:80000
KS ci ratio: 8.764236e-01	ci left: 1.429964e-04	ci right 3.708609e-04	k: 19	n:80000
THSD7B   80000 perm   19 sec   (4125 perm/sec)   p_kst 2.375000e-04   p_cons 4.136625e-01   p_joint 2.375000e-04

Joint ci ratio: 8.000555e-01	ci left: 1.620070e-04	ci right 3.834343e-04	k: 23	n:90000
Cons ci ratio: 1.556366e-02	ci left: 4.102133e-01	ci right 4.166589e-01	k: 37209	n:90000
KS ci ratio: 8.000555e-01	ci left: 1.620070e-04	ci right 3.834343e-04	k: 23	n:90000
THSD7B   90000 perm   22 sec   (4105 perm/sec)   p_kst 2.555556e-04   p_cons 4.134333e-01   p_joint 2.555556e-04

Joint ci ratio: 7.542987e-01	ci left: 1.698474e-04	ci right 3.809372e-04	k: 26	n:100000
Cons ci ratio: 1.475812e-02	ci left: 4.106051e-01	ci right 4.167199e-01	k: 41366	n:100000
KS ci ratio: 7.542987e-01	ci left: 1.698474e-04	ci right 3.809372e-04	k: 26	n:100000
THSD7B   100000 perm   25 sec   (4079 perm/sec)   p_kst 2.600000e-04   p_cons 4.136600e-01   p_joint 2.600000e-04

Joint ci ratio: 7.039504e-01	ci left: 1.840153e-04	ci right 3.893124e-04	k: 30	n:110000
Cons ci ratio: 1.409896e-02	ci left: 4.097975e-01	ci right 4.156253e-01	k: 45398	n:110000
KS ci ratio: 7.039504e-01	ci left: 1.840153e-04	ci right 3.893124e-04	k: 30	n:110000
THSD7B   110000 perm   27 sec   (4050 perm/sec)   p_kst 2.727273e-04   p_cons 4.127091e-01   p_joint 2.727273e-04

Joint ci ratio: 6.928694e-01	ci left: 1.755315e-04	ci right 3.666637e-04	k: 31	n:120000
Cons ci ratio: 1.348392e-02	ci left: 4.104536e-01	ci right 4.160340e-01	k: 49589	n:120000
KS ci ratio: 6.928694e-01	ci left: 1.755315e-04	ci right 3.666637e-04	k: 31	n:120000
THSD7B   120000 perm   30 sec   (4015 perm/sec)   p_kst 2.583333e-04   p_cons 4.132417e-01   p_joint 2.583333e-04

Joint ci ratio: 6.625092e-01	ci left: 1.811296e-04	ci right 3.654548e-04	k: 34	n:130000
Cons ci ratio: 1.295072e-02	ci left: 4.107212e-01	ci right 4.160827e-01	k: 53742	n:130000
KS ci ratio: 6.625092e-01	ci left: 1.811296e-04	ci right 3.654548e-04	k: 34	n:130000
THSD7B   130000 perm   33 sec   (3981 perm/sec)   p_kst 2.615385e-04   p_cons 4.134000e-01   p_joint 2.615385e-04

Joint ci ratio: 6.197157e-01	ci left: 1.980988e-04	ci right 3.807968e-04	k: 39	n:140000
Cons ci ratio: 1.247413e-02	ci left: 4.110328e-01	ci right 4.161993e-01	k: 57906	n:140000
KS ci ratio: 6.197157e-01	ci left: 1.980988e-04	ci right 3.807968e-04	k: 39	n:140000
THSD7B   140000 perm   36 sec   (3939 perm/sec)   p_kst 2.785714e-04   p_cons 4.136143e-01   p_joint 2.785714e-04

Joint ci ratio: 6.121154e-01	ci left: 1.905172e-04	ci right 3.631068e-04	k: 40	n:150000
Cons ci ratio: 1.205036e-02	ci left: 4.111527e-01	ci right 4.161439e-01	k: 62047	n:150000
KS ci ratio: 6.121154e-01	ci left: 1.905172e-04	ci right 3.631068e-04	k: 40	n:150000
THSD7B   150000 perm   38 sec   (3899 perm/sec)   p_kst 2.666667e-04   p_cons 4.136467e-01   p_joint 2.666667e-04

Joint ci ratio: 5.977122e-01	ci left: 1.891933e-04	ci right 3.548074e-04	k: 42	n:160000
Cons ci ratio: 1.165892e-02	ci left: 4.115975e-01	ci right 4.164306e-01	k: 66242	n:160000
KS ci ratio: 5.977122e-01	ci left: 1.891933e-04	ci right 3.548074e-04	k: 42	n:160000
THSD7B   160000 perm   41 sec   (3860 perm/sec)   p_kst 2.625000e-04   p_cons 4.140125e-01   p_joint 2.625000e-04

Joint ci ratio: 5.657217e-01	ci left: 2.031470e-04	ci right 3.676305e-04	k: 47	n:170000
Cons ci ratio: 1.131729e-02	ci left: 4.113927e-01	ci right 4.160809e-01	k: 70335	n:170000
KS ci ratio: 5.657217e-01	ci left: 2.031470e-04	ci right 3.676305e-04	k: 47	n:170000
THSD7B   170000 perm   45 sec   (3819 perm/sec)   p_kst 2.764706e-04   p_cons 4.137353e-01   p_joint 2.764706e-04

Joint ci ratio: 5.542932e-01	ci left: 2.013981e-04	ci right 3.598764e-04	k: 49	n:180000
Cons ci ratio: 1.099483e-02	ci left: 4.116177e-01	ci right 4.161739e-01	k: 74501	n:180000
KS ci ratio: 5.542932e-01	ci left: 2.013981e-04	ci right 3.598764e-04	k: 49	n:180000
THSD7B   180000 perm   48 sec   (3765 perm/sec)   p_kst 2.722222e-04   p_cons 4.138944e-01   p_joint 2.722222e-04

Joint ci ratio: 5.488347e-01	ci left: 1.953270e-04	ci right 3.469263e-04	k: 50	n:190000
Cons ci ratio: 1.070309e-02	ci left: 4.116104e-01	ci right 4.160448e-01	k: 78627	n:190000
KS ci ratio: 5.488347e-01	ci left: 1.953270e-04	ci right 3.469263e-04	k: 50	n:190000
THSD7B   190000 perm   51 sec   (3727 perm/sec)   p_kst 2.631579e-04   p_cons 4.138263e-01   p_joint 2.631579e-04

Joint ci ratio: 5.383807e-01	ci left: 1.941863e-04	ci right 3.409416e-04	k: 52	n:200000
Cons ci ratio: 1.043082e-02	ci left: 4.117252e-01	ci right 4.160473e-01	k: 82777	n:200000
KS ci ratio: 5.383807e-01	ci left: 1.941863e-04	ci right 3.409416e-04	k: 52	n:200000
THSD7B   200000 perm   54 sec   (3688 perm/sec)   p_kst 2.600000e-04   p_cons 4.138850e-01   p_joint 2.600000e-04

Joint ci ratio: 5.191450e-01	ci left: 2.014432e-04	ci right 3.462751e-04	k: 56	n:210000
Cons ci ratio: 1.018203e-02	ci left: 4.116543e-01	ci right 4.158719e-01	k: 86890	n:210000
KS ci ratio: 5.191450e-01	ci left: 2.014432e-04	ci right 3.462751e-04	k: 56	n:210000
THSD7B   210000 perm   58 sec   (3650 perm/sec)   p_kst 2.666667e-04   p_cons 4.137619e-01   p_joint 2.666667e-04

Joint ci ratio: 4.977692e-01	ci left: 2.120981e-04	ci right 3.561544e-04	k: 61	n:220000
Cons ci ratio: 9.951160e-03	ci left: 4.115455e-01	ci right 4.156658e-01	k: 90993	n:220000
KS ci ratio: 4.977692e-01	ci left: 2.120981e-04	ci right 3.561544e-04	k: 61	n:220000
THSD7B   220000 perm   61 sec   (3601 perm/sec)   p_kst 2.772727e-04   p_cons 4.136045e-01   p_joint 2.772727e-04

Joint ci ratio: 4.788334e-01	ci left: 2.219389e-04	ci right 3.650648e-04	k: 66	n:230000
Cons ci ratio: 9.726940e-03	ci left: 4.118643e-01	ci right 4.158944e-01	k: 95192	n:230000
KS ci ratio: 4.788334e-01	ci left: 2.219389e-04	ci right 3.650648e-04	k: 66	n:230000
THSD7B   230000 perm   65 sec   (3563 perm/sec)   p_kst 2.869565e-04   p_cons 4.138783e-01   p_joint 2.869565e-04

Joint ci ratio: 4.684603e-01	ci left: 2.236988e-04	ci right 3.638358e-04	k: 69	n:240000
Cons ci ratio: 9.521962e-03	ci left: 4.119160e-01	ci right 4.158611e-01	k: 99333	n:240000
KS ci ratio: 4.684603e-01	ci left: 2.236988e-04	ci right 3.638358e-04	k: 69	n:240000
THSD7B   240000 perm   68 sec   (3521 perm/sec)   p_kst 2.875000e-04   p_cons 4.138875e-01   p_joint 2.875000e-04

Joint ci ratio: 4.651514e-01	ci left: 2.182800e-04	ci right 3.537501e-04	k: 70	n:250000
Cons ci ratio: 9.332111e-03	ci left: 4.118244e-01	ci right 4.156896e-01	k: 103439	n:250000
KS ci ratio: 4.651514e-01	ci left: 2.182800e-04	ci right 3.537501e-04	k: 70	n:250000
THSD7B   250000 perm   72 sec   (3480 perm/sec)   p_kst 2.800000e-04   p_cons 4.137560e-01   p_joint 2.800000e-04

Joint ci ratio: 4.525765e-01	ci left: 2.234907e-04	ci right 3.572956e-04	k: 74	n:260000
Cons ci ratio: 9.149915e-03	ci left: 4.119136e-01	ci right 4.157037e-01	k: 107590	n:260000
KS ci ratio: 4.525765e-01	ci left: 2.234907e-04	ci right 3.572956e-04	k: 74	n:260000
THSD7B   260000 perm   76 sec   (3442 perm/sec)   p_kst 2.846154e-04   p_cons 4.138077e-01   p_joint 2.846154e-04

Joint ci ratio: 4.354894e-01	ci left: 2.349513e-04	ci right 3.687530e-04	k: 80	n:270000
Cons ci ratio: 8.976825e-03	ci left: 4.120598e-01	ci right 4.157791e-01	k: 111758	n:270000
KS ci ratio: 4.354894e-01	ci left: 2.349513e-04	ci right 3.687530e-04	k: 80	n:270000
THSD7B   270000 perm   79 sec   (3402 perm/sec)   p_kst 2.962963e-04   p_cons 4.139185e-01   p_joint 2.962963e-04

Joint ci ratio: 4.302114e-01	ci left: 2.329245e-04	ci right 3.635001e-04	k: 82	n:280000
Cons ci ratio: 8.812551e-03	ci left: 4.122318e-01	ci right 4.158842e-01	k: 115936	n:280000
KS ci ratio: 4.302114e-01	ci left: 2.329245e-04	ci right 3.635001e-04	k: 82	n:280000
THSD7B   280000 perm   83 sec   (3364 perm/sec)   p_kst 2.928571e-04   p_cons 4.140571e-01   p_joint 2.928571e-04

Joint ci ratio: 4.226411e-01	ci left: 2.341271e-04	ci right 3.624144e-04	k: 85	n:290000
Cons ci ratio: 8.665102e-03	ci left: 4.119377e-01	ci right 4.155261e-01	k: 119982	n:290000
KS ci ratio: 4.226411e-01	ci left: 2.341271e-04	ci right 3.624144e-04	k: 85	n:290000
THSD7B   290000 perm   87 sec   (3326 perm/sec)   p_kst 2.931034e-04   p_cons 4.137310e-01   p_joint 2.931034e-04

Joint ci ratio: 4.154568e-01	ci left: 2.352684e-04	ci right 3.613826e-04	k: 88	n:300000
Cons ci ratio: 8.519070e-03	ci left: 4.119901e-01	ci right 4.155182e-01	k: 124126	n:300000
KS ci ratio: 4.154568e-01	ci left: 2.352684e-04	ci right 3.613826e-04	k: 88	n:300000
THSD7B   300000 perm   91 sec   (3291 perm/sec)   p_kst 2.933333e-04   p_cons 4.137533e-01   p_joint 2.933333e-04

Joint ci ratio: 4.154588e-01	ci left: 2.276788e-04	ci right 3.497255e-04	k: 88	n:310000
Cons ci ratio: 8.379066e-03	ci left: 4.121041e-01	ci right 4.155749e-01	k: 128290	n:310000
KS ci ratio: 4.154588e-01	ci left: 2.276788e-04	ci right 3.497255e-04	k: 88	n:310000
THSD7B   310000 perm   95 sec   (3253 perm/sec)   p_kst 2.838710e-04   p_cons 4.138387e-01   p_joint 2.838710e-04

Joint ci ratio: 4.064254e-01	ci left: 2.317717e-04	ci right 3.525818e-04	k: 92	n:320000
Cons ci ratio: 8.245108e-03	ci left: 4.122489e-01	ci right 4.156651e-01	k: 132466	n:320000
KS ci ratio: 4.064254e-01	ci left: 2.317717e-04	ci right 3.525818e-04	k: 92	n:320000
THSD7B   320000 perm   99 sec   (3219 perm/sec)   p_kst 2.875000e-04   p_cons 4.139563e-01   p_joint 2.875000e-04

Joint ci ratio: 4.021250e-01	ci left: 2.301925e-04	ci right 3.485713e-04	k: 94	n:330000
Cons ci ratio: 8.408819e-03	ci left: 3.953906e-01	ci right 3.987324e-01	k: 131030	n:330000
KS ci ratio: 4.021250e-01	ci left: 2.301925e-04	ci right 3.485713e-04	k: 94	n:330000
THSD7B   330000 perm   104 sec   (3186 perm/sec)   p_kst 2.848485e-04   p_cons 3.970606e-01   p_joint 2.848485e-04

Joint ci ratio: 3.959221e-01	ci left: 2.313602e-04	ci right 3.480237e-04	k: 97	n:340000
Cons ci ratio: 8.287119e-03	ci left: 3.952490e-01	ci right 3.985410e-01	k: 134944	n:340000
KS ci ratio: 3.959221e-01	ci left: 2.313602e-04	ci right 3.480237e-04	k: 97	n:340000
THSD7B   340000 perm   108 sec   (3152 perm/sec)   p_kst 2.852941e-04   p_cons 3.968941e-01   p_joint 2.852941e-04

Joint ci ratio: 3.939185e-01	ci left: 2.273232e-04	ci right 3.412199e-04	k: 98	n:350000
Cons ci ratio: 8.167141e-03	ci left: 3.953157e-01	ci right 3.985603e-01	k: 138928	n:350000
KS ci ratio: 3.939185e-01	ci left: 2.273232e-04	ci right 3.412199e-04	k: 98	n:350000
THSD7B   350000 perm   112 sec   (3119 perm/sec)   p_kst 2.800000e-04   p_cons 3.969371e-01   p_joint 2.800000e-04

Joint ci ratio: 3.919450e-01	ci left: 2.235119e-04	ci right 3.347926e-04	k: 99	n:360000
Cons ci ratio: 8.055686e-03	ci left: 3.951736e-01	ci right 3.983726e-01	k: 142838	n:360000
KS ci ratio: 3.919450e-01	ci left: 2.235119e-04	ci right 3.347926e-04	k: 99	n:360000
THSD7B   360000 perm   117 sec   (3085 perm/sec)   p_kst 2.750000e-04   p_cons 3.967722e-01   p_joint 2.750000e-04

Joint ci ratio: 3.861948e-01	ci left: 2.247860e-04	ci right 3.346416e-04	k: 102	n:370000
Cons ci ratio: 7.945440e-03	ci left: 3.952339e-01	ci right 3.983894e-01	k: 146820	n:370000
KS ci ratio: 3.861948e-01	ci left: 2.247860e-04	ci right 3.346416e-04	k: 102	n:370000
THSD7B   370000 perm   121 sec   (3052 perm/sec)   p_kst 2.756757e-04   p_cons 3.968108e-01   p_joint 2.756757e-04

Joint ci ratio: 3.806904e-01	ci left: 2.260043e-04	ci right 3.344874e-04	k: 105	n:380000
Cons ci ratio: 7.837963e-03	ci left: 3.953912e-01	ci right 3.985051e-01	k: 150840	n:380000
KS ci ratio: 3.806904e-01	ci left: 2.260043e-04	ci right 3.344874e-04	k: 105	n:380000
THSD7B   380000 perm   126 sec   (3017 perm/sec)   p_kst 2.763158e-04   p_cons 3.969474e-01   p_joint 2.763158e-04

Joint ci ratio: 3.771495e-01	ci left: 2.248491e-04	ci right 3.315253e-04	k: 107	n:390000
Cons ci ratio: 7.737424e-03	ci left: 3.953742e-01	ci right 3.984478e-01	k: 154795	n:390000
KS ci ratio: 3.771495e-01	ci left: 2.248491e-04	ci right 3.315253e-04	k: 107	n:390000
THSD7B   390000 perm   131 sec   (2986 perm/sec)   p_kst 2.743590e-04   p_cons 3.969103e-01   p_joint 2.743590e-04

Joint ci ratio: 3.771508e-01	ci left: 2.192277e-04	ci right 3.232374e-04	k: 107	n:400000
Cons ci ratio: 7.640219e-03	ci left: 3.953858e-01	ci right 3.984207e-01	k: 158761	n:400000
KS ci ratio: 3.771508e-01	ci left: 2.192277e-04	ci right 3.232374e-04	k: 107	n:400000
THSD7B   400000 perm   135 sec   (2955 perm/sec)   p_kst 2.675000e-04   p_cons 3.969025e-01   p_joint 2.675000e-04

Joint ci ratio: 3.737067e-01	ci left: 2.182984e-04	ci right 3.206898e-04	k: 109	n:410000
Cons ci ratio: 7.548318e-03	ci left: 3.952874e-01	ci right 3.982848e-01	k: 162682	n:410000
KS ci ratio: 3.737067e-01	ci left: 2.182984e-04	ci right 3.206898e-04	k: 109	n:410000
THSD7B   410000 perm   140 sec   (2925 perm/sec)   p_kst 2.658537e-04   p_cons 3.967854e-01   p_joint 2.658537e-04

Joint ci ratio: 3.639122e-01	ci left: 2.260630e-04	ci right 3.286579e-04	k: 115	n:420000
Cons ci ratio: 7.455909e-03	ci left: 3.954342e-01	ci right 3.983958e-01	k: 166704	n:420000
KS ci ratio: 3.639122e-01	ci left: 2.260630e-04	ci right 3.286579e-04	k: 115	n:420000
THSD7B   420000 perm   145 sec   (2894 perm/sec)   p_kst 2.738095e-04   p_cons 3.969143e-01   p_joint 2.738095e-04

Joint ci ratio: 3.592957e-01	ci left: 2.271486e-04	ci right 3.286225e-04	k: 118	n:430000
Cons ci ratio: 7.372110e-03	ci left: 3.952303e-01	ci right 3.981571e-01	k: 170578	n:430000
KS ci ratio: 3.592957e-01	ci left: 2.271486e-04	ci right 3.286225e-04	k: 118	n:430000
THSD7B   430000 perm   150 sec   (2866 perm/sec)   p_kst 2.744186e-04   p_cons 3.966930e-01   p_joint 2.744186e-04

Joint ci ratio: 3.577962e-01	ci left: 2.240541e-04	ci right 3.236306e-04	k: 119	n:440000
Cons ci ratio: 7.290621e-03	ci left: 3.950655e-01	ci right 3.979586e-01	k: 174465	n:440000
KS ci ratio: 3.577962e-01	ci left: 2.240541e-04	ci right 3.236306e-04	k: 119	n:440000
THSD7B   440000 perm   155 sec   (2839 perm/sec)   p_kst 2.704545e-04   p_cons 3.965114e-01   p_joint 2.704545e-04

Joint ci ratio: 3.563153e-01	ci left: 2.210980e-04	ci right 3.188596e-04	k: 120	n:450000
Cons ci ratio: 7.208595e-03	ci left: 3.951192e-01	ci right 3.979799e-01	k: 178447	n:450000
KS ci ratio: 3.563153e-01	ci left: 2.210980e-04	ci right 3.188596e-04	k: 120	n:450000
THSD7B   450000 perm   160 sec   (2812 perm/sec)   p_kst 2.666667e-04   p_cons 3.965489e-01   p_joint 2.666667e-04

Joint ci ratio: 3.534069e-01	ci left: 2.202517e-04	ci right 3.166618e-04	k: 122	n:460000
Cons ci ratio: 7.130539e-03	ci left: 3.950860e-01	ci right 3.979153e-01	k: 182390	n:460000
KS ci ratio: 3.534069e-01	ci left: 2.202517e-04	ci right 3.166618e-04	k: 122	n:460000
THSD7B   460000 perm   165 sec   (2784 perm/sec)   p_kst 2.652174e-04   p_cons 3.965000e-01   p_joint 2.652174e-04

Joint ci ratio: 3.519796e-01	ci left: 2.175046e-04	ci right 3.122398e-04	k: 123	n:470000
Cons ci ratio: 7.050764e-03	ci left: 3.953392e-01	ci right 3.981386e-01	k: 186467	n:470000
KS ci ratio: 3.519796e-01	ci left: 2.175046e-04	ci right 3.122398e-04	k: 123	n:470000
THSD7B   470000 perm   170 sec   (2758 perm/sec)   p_kst 2.617021e-04   p_cons 3.967383e-01   p_joint 2.617021e-04

Joint ci ratio: 3.464358e-01	ci left: 2.205758e-04	ci right 3.147961e-04	k: 127	n:480000
Cons ci ratio: 6.977369e-03	ci left: 3.953239e-01	ci right 3.980940e-01	k: 190420	n:480000
KS ci ratio: 3.464358e-01	ci left: 2.205758e-04	ci right 3.147961e-04	k: 127	n:480000
THSD7B   480000 perm   176 sec   (2731 perm/sec)   p_kst 2.645833e-04   p_cons 3.967083e-01   p_joint 2.645833e-04

Joint ci ratio: 3.450910e-01	ci left: 2.179378e-04	ci right 3.105891e-04	k: 128	n:490000
Cons ci ratio: 6.901775e-03	ci left: 3.956174e-01	ci right 3.983593e-01	k: 194524	n:490000
KS ci ratio: 3.450910e-01	ci left: 2.179378e-04	ci right 3.105891e-04	k: 128	n:490000
THSD7B   490000 perm   181 sec   (2705 perm/sec)   p_kst 2.612245e-04   p_cons 3.969878e-01   p_joint 2.612245e-04

Joint ci ratio: 3.411468e-01	ci left: 2.190621e-04	ci right 3.108923e-04	k: 131	n:500000
Cons ci ratio: 6.833491e-03	ci left: 3.955555e-01	ci right 3.982697e-01	k: 198456	n:500000
KS ci ratio: 3.411468e-01	ci left: 2.190621e-04	ci right 3.108923e-04	k: 131	n:500000
THSD7B   500000 perm   186 sec   (2682 perm/sec)   p_kst 2.620000e-04   p_cons 3.969120e-01   p_joint 2.620000e-04

Joint ci ratio: 3.398625e-01	ci left: 2.165599e-04	ci right 3.069243e-04	k: 132	n:510000
Cons ci ratio: 6.766168e-03	ci left: 3.955686e-01	ci right 3.982561e-01	k: 202425	n:510000
KS ci ratio: 3.398625e-01	ci left: 2.165599e-04	ci right 3.069243e-04	k: 132	n:510000
THSD7B   510000 perm   192 sec   (2656 perm/sec)   p_kst 2.588235e-04   p_cons 3.969118e-01   p_joint 2.588235e-04

Joint ci ratio: 3.348638e-01	ci left: 2.194361e-04	ci right 3.093633e-04	k: 136	n:520000
Cons ci ratio: 6.700850e-03	ci left: 3.955775e-01	ci right 3.982390e-01	k: 206392	n:520000
KS ci ratio: 3.348638e-01	ci left: 2.194361e-04	ci right 3.093633e-04	k: 136	n:520000
THSD7B   520000 perm   198 sec   (2631 perm/sec)   p_kst 2.615385e-04   p_cons 3.969077e-01   p_joint 2.615385e-04

Joint ci ratio: 3.312564e-01	ci left: 2.204829e-04	ci right 3.096582e-04	k: 139	n:530000
Cons ci ratio: 6.636656e-03	ci left: 3.956390e-01	ci right 3.982753e-01	k: 210387	n:530000
KS ci ratio: 3.312564e-01	ci left: 2.204829e-04	ci right 3.096582e-04	k: 139	n:530000
THSD7B   530000 perm   203 sec   (2607 perm/sec)   p_kst 2.622642e-04   p_cons 3.969566e-01   p_joint 2.622642e-04

Joint ci ratio: 3.254943e-01	ci left: 2.248960e-04	ci right 3.139435e-04	k: 144	n:540000
Cons ci ratio: 6.574628e-03	ci left: 3.956724e-01	ci right 3.982842e-01	k: 214368	n:540000
KS ci ratio: 3.254943e-01	ci left: 2.248960e-04	ci right 3.139435e-04	k: 144	n:540000
THSD7B   540000 perm   209 sec   (2582 perm/sec)   p_kst 2.666667e-04   p_cons 3.969778e-01   p_joint 2.666667e-04

Joint ci ratio: 3.232726e-01	ci left: 2.241473e-04	ci right 3.121669e-04	k: 146	n:550000
Cons ci ratio: 6.516361e-03	ci left: 3.955539e-01	ci right 3.981417e-01	k: 218266	n:550000
KS ci ratio: 3.232726e-01	ci left: 2.241473e-04	ci right 3.121669e-04	k: 146	n:550000
THSD7B   550000 perm   215 sec   (2560 perm/sec)   p_kst 2.654545e-04   p_cons 3.968473e-01   p_joint 2.654545e-04

Joint ci ratio: 3.221791e-01	ci left: 2.217857e-04	ci right 3.085225e-04	k: 147	n:560000
Cons ci ratio: 6.457399e-03	ci left: 3.956040e-01	ci right 3.981685e-01	k: 222256	n:560000
KS ci ratio: 3.221791e-01	ci left: 2.217857e-04	ci right 3.085225e-04	k: 147	n:560000
THSD7B   560000 perm   221 sec   (2536 perm/sec)   p_kst 2.625000e-04   p_cons 3.968857e-01   p_joint 2.625000e-04

Joint ci ratio: 3.189625e-01	ci left: 2.227344e-04	ci right 3.087950e-04	k: 150	n:570000
Cons ci ratio: 6.400854e-03	ci left: 3.955892e-01	ci right 3.981311e-01	k: 226210	n:570000
KS ci ratio: 3.189625e-01	ci left: 2.227344e-04	ci right 3.087950e-04	k: 150	n:570000
THSD7B   570000 perm   227 sec   (2513 perm/sec)   p_kst 2.631579e-04   p_cons 3.968596e-01   p_joint 2.631579e-04

Joint ci ratio: 3.158404e-01	ci left: 2.236546e-04	ci right 3.090540e-04	k: 153	n:580000
Cons ci ratio: 6.345654e-03	ci left: 3.955837e-01	ci right 3.981036e-01	k: 230169	n:580000
KS ci ratio: 3.158404e-01	ci left: 2.236546e-04	ci right 3.090540e-04	k: 153	n:580000
THSD7B   580000 perm   233 sec   (2492 perm/sec)   p_kst 2.637931e-04   p_cons 3.968431e-01   p_joint 2.637931e-04

Joint ci ratio: 3.148203e-01	ci left: 2.214246e-04	ci right 3.056445e-04	k: 154	n:590000
Cons ci ratio: 6.290833e-03	ci left: 3.956563e-01	ci right 3.981548e-01	k: 234174	n:590000
KS ci ratio: 3.148203e-01	ci left: 2.214246e-04	ci right 3.056445e-04	k: 154	n:590000
THSD7B   590000 perm   239 sec   (2469 perm/sec)   p_kst 2.610169e-04   p_cons 3.969051e-01   p_joint 2.610169e-04

Joint ci ratio: 3.118171e-01	ci left: 2.223411e-04	ci right 3.059423e-04	k: 157	n:600000
Cons ci ratio: 6.239885e-03	ci left: 3.955368e-01	ci right 3.980142e-01	k: 238065	n:600000
KS ci ratio: 3.118171e-01	ci left: 2.223411e-04	ci right 3.059423e-04	k: 157	n:600000
THSD7B   600000 perm   245 sec   (2448 perm/sec)   p_kst 2.616667e-04   p_cons 3.967750e-01   p_joint 2.616667e-04

Joint ci ratio: 3.098623e-01	ci left: 2.217191e-04	ci right 3.044605e-04	k: 159	n:610000
Cons ci ratio: 6.189539e-03	ci left: 3.954687e-01	ci right 3.979257e-01	k: 241985	n:610000
KS ci ratio: 3.098623e-01	ci left: 2.217191e-04	ci right 3.044605e-04	k: 159	n:610000
THSD7B   610000 perm   251 sec   (2426 perm/sec)   p_kst 2.606557e-04   p_cons 3.966967e-01   p_joint 2.606557e-04

Joint ci ratio: 3.088989e-01	ci left: 2.196307e-04	ci right 3.012876e-04	k: 160	n:620000
Cons ci ratio: 6.140434e-03	ci left: 3.953997e-01	ci right 3.978367e-01	k: 245903	n:620000
KS ci ratio: 3.088989e-01	ci left: 2.196307e-04	ci right 3.012876e-04	k: 160	n:620000
THSD7B   620000 perm   258 sec   (2406 perm/sec)   p_kst 2.580645e-04   p_cons 3.966177e-01   p_joint 2.580645e-04

Joint ci ratio: 3.060605e-01	ci left: 2.205390e-04	ci right 3.016334e-04	k: 163	n:630000
Cons ci ratio: 6.090641e-03	ci left: 3.954774e-01	ci right 3.978950e-01	k: 249912	n:630000
KS ci ratio: 3.060605e-01	ci left: 2.205390e-04	ci right 3.016334e-04	k: 163	n:630000
THSD7B   630000 perm   264 sec   (2386 perm/sec)   p_kst 2.587302e-04   p_cons 3.966857e-01   p_joint 2.587302e-04

Joint ci ratio: 3.032989e-01	ci left: 2.214223e-04	ci right 3.019651e-04	k: 166	n:640000
Cons ci ratio: 6.042237e-03	ci left: 3.955371e-01	ci right 3.979358e-01	k: 253911	n:640000
KS ci ratio: 3.032989e-01	ci left: 2.214223e-04	ci right 3.019651e-04	k: 166	n:640000
THSD7B   640000 perm   270 sec   (2367 perm/sec)   p_kst 2.593750e-04   p_cons 3.967359e-01   p_joint 2.593750e-04

Joint ci ratio: 3.014990e-01	ci left: 2.208593e-04	ci right 3.006292e-04	k: 168	n:650000
Cons ci ratio: 5.995720e-03	ci left: 3.955350e-01	ci right 3.979151e-01	k: 257871	n:650000
KS ci ratio: 3.014990e-01	ci left: 2.208593e-04	ci right 3.006292e-04	k: 168	n:650000
THSD7B   650000 perm   277 sec   (2348 perm/sec)   p_kst 2.584615e-04   p_cons 3.967246e-01   p_joint 2.584615e-04

Joint ci ratio: 2.979928e-01	ci left: 2.231179e-04	ci right 3.025891e-04	k: 172	n:660000
Cons ci ratio: 5.949960e-03	ci left: 3.955573e-01	ci right 3.979194e-01	k: 261847	n:660000
KS ci ratio: 2.979928e-01	ci left: 2.231179e-04	ci right 3.025891e-04	k: 172	n:660000
THSD7B   660000 perm   283 sec   (2329 perm/sec)   p_kst 2.606061e-04   p_cons 3.967379e-01   p_joint 2.606061e-04

Joint ci ratio: 2.971356e-01	ci left: 2.211689e-04	ci right 2.996765e-04	k: 173	n:670000
Cons ci ratio: 5.906244e-03	ci left: 3.954970e-01	ci right 3.978412e-01	k: 265768	n:670000
KS ci ratio: 2.971356e-01	ci left: 2.211689e-04	ci right 2.996765e-04	k: 173	n:670000
THSD7B   670000 perm   290 sec   (2312 perm/sec)   p_kst 2.582090e-04   p_cons 3.966687e-01   p_joint 2.582090e-04

Joint ci ratio: 2.954427e-01	ci left: 2.206390e-04	ci right 2.984287e-04	k: 175	n:680000
Cons ci ratio: 5.862452e-03	ci left: 3.955222e-01	ci right 3.978492e-01	k: 269746	n:680000
KS ci ratio: 2.954427e-01	ci left: 2.206390e-04	ci right 2.984287e-04	k: 175	n:680000
THSD7B   680000 perm   297 sec   (2293 perm/sec)   p_kst 2.573529e-04   p_cons 3.966853e-01   p_joint 2.573529e-04

Joint ci ratio: 2.937783e-01	ci left: 2.201257e-04	ci right 2.972158e-04	k: 177	n:690000
Cons ci ratio: 5.819214e-03	ci left: 3.955802e-01	ci right 3.978903e-01	k: 273747	n:690000
KS ci ratio: 2.937783e-01	ci left: 2.201257e-04	ci right 2.972158e-04	k: 177	n:690000
THSD7B   690000 perm   303 sec   (2275 perm/sec)   p_kst 2.565217e-04   p_cons 3.967348e-01   p_joint 2.565217e-04

Joint ci ratio: 2.921418e-01	ci left: 2.196282e-04	ci right 2.960364e-04	k: 179	n:700000
Cons ci ratio: 5.778022e-03	ci left: 3.955451e-01	ci right 3.978386e-01	k: 277684	n:700000
KS ci ratio: 2.921418e-01	ci left: 2.196282e-04	ci right 2.960364e-04	k: 179	n:700000
THSD7B   700000 perm   310 sec   (2258 perm/sec)   p_kst 2.557143e-04   p_cons 3.966914e-01   p_joint 2.557143e-04

Joint ci ratio: 2.897372e-01	ci left: 2.204519e-04	ci right 2.963997e-04	k: 182	n:710000
Cons ci ratio: 5.737845e-03	ci left: 3.954984e-01	ci right 3.977756e-01	k: 281612	n:710000
KS ci ratio: 2.897372e-01	ci left: 2.204519e-04	ci right 2.963997e-04	k: 182	n:710000
THSD7B   710000 perm   317 sec   (2238 perm/sec)   p_kst 2.563380e-04   p_cons 3.966366e-01   p_joint 2.563380e-04

Joint ci ratio: 2.889491e-01	ci left: 2.186781e-04	ci right 2.937725e-04	k: 183	n:720000
Cons ci ratio: 5.698080e-03	ci left: 3.954878e-01	ci right 3.977491e-01	k: 285565	n:720000
KS ci ratio: 2.889491e-01	ci left: 2.186781e-04	ci right 2.937725e-04	k: 183	n:720000
THSD7B   720000 perm   324 sec   (2221 perm/sec)   p_kst 2.541667e-04   p_cons 3.966181e-01   p_joint 2.541667e-04

Joint ci ratio: 2.858584e-01	ci left: 2.207671e-04	ci right 2.956215e-04	k: 187	n:730000
Cons ci ratio: 5.659666e-03	ci left: 3.954324e-01	ci right 3.976781e-01	k: 289485	n:730000
KS ci ratio: 2.858584e-01	ci left: 2.207671e-04	ci right 2.956215e-04	k: 187	n:730000
THSD7B   730000 perm   331 sec   (2203 perm/sec)   p_kst 2.561644e-04   p_cons 3.965548e-01   p_joint 2.561644e-04

Joint ci ratio: 2.836044e-01	ci left: 2.215484e-04	ci right 2.959693e-04	k: 190	n:740000
Cons ci ratio: 5.622383e-03	ci left: 3.953474e-01	ci right 3.975778e-01	k: 293382	n:740000
KS ci ratio: 2.836044e-01	ci left: 2.215484e-04	ci right 2.959693e-04	k: 190	n:740000
THSD7B   740000 perm   339 sec   (2185 perm/sec)   p_kst 2.567568e-04   p_cons 3.964622e-01   p_joint 2.567568e-04

Joint ci ratio: 2.814030e-01	ci left: 2.223110e-04	ci right 2.963057e-04	k: 193	n:750000
Cons ci ratio: 5.585361e-03	ci left: 3.953047e-01	ci right 3.975201e-01	k: 297309	n:750000
KS ci ratio: 2.814030e-01	ci left: 2.223110e-04	ci right 2.963057e-04	k: 193	n:750000
THSD7B   750000 perm   346 sec   (2167 perm/sec)   p_kst 2.573333e-04   p_cons 3.964120e-01   p_joint 2.573333e-04

Joint ci ratio: 2.814035e-01	ci left: 2.193859e-04	ci right 2.924070e-04	k: 193	n:760000
Cons ci ratio: 5.546924e-03	ci left: 3.954473e-01	ci right 3.976482e-01	k: 301376	n:760000
KS ci ratio: 2.814035e-01	ci left: 2.193859e-04	ci right 2.924070e-04	k: 193	n:760000
THSD7B   760000 perm   353 sec   (2151 perm/sec)   p_kst 2.539474e-04   p_cons 3.965474e-01   p_joint 2.539474e-04

Joint ci ratio: 2.814040e-01	ci left: 2.165366e-04	ci right 2.886096e-04	k: 193	n:770000
Cons ci ratio: 5.510854e-03	ci left: 3.954487e-01	ci right 3.976352e-01	k: 305337	n:770000
KS ci ratio: 2.814040e-01	ci left: 2.165366e-04	ci right 2.886096e-04	k: 193	n:770000
THSD7B   770000 perm   361 sec   (2135 perm/sec)   p_kst 2.506494e-04   p_cons 3.965416e-01   p_joint 2.506494e-04

Joint ci ratio: 2.814044e-01	ci left: 2.137605e-04	ci right 2.849095e-04	k: 193	n:780000
Cons ci ratio: 5.474556e-03	ci left: 3.955308e-01	ci right 3.977033e-01	k: 309361	n:780000
KS ci ratio: 2.814044e-01	ci left: 2.137605e-04	ci right 2.849095e-04	k: 193	n:780000
THSD7B   780000 perm   368 sec   (2118 perm/sec)   p_kst 2.474359e-04   p_cons 3.966167e-01   p_joint 2.474359e-04

Joint ci ratio: 2.799651e-01	ci left: 2.134081e-04	ci right 2.840125e-04	k: 195	n:790000
Cons ci ratio: 5.440000e-03	ci left: 3.955198e-01	ci right 3.976785e-01	k: 313313	n:790000
KS ci ratio: 2.799651e-01	ci left: 2.134081e-04	ci right 2.840125e-04	k: 195	n:790000
THSD7B   790000 perm   375 sec   (2104 perm/sec)   p_kst 2.468354e-04   p_cons 3.965987e-01   p_joint 2.468354e-04

Joint ci ratio: 2.771510e-01	ci left: 2.153913e-04	ci right 2.858106e-04	k: 199	n:800000
Cons ci ratio: 5.406006e-03	ci left: 3.955165e-01	ci right 3.976617e-01	k: 317271	n:800000
KS ci ratio: 2.771510e-01	ci left: 2.153913e-04	ci right 2.858106e-04	k: 199	n:800000
THSD7B   800000 perm   383 sec   (2089 perm/sec)   p_kst 2.487500e-04   p_cons 3.965887e-01   p_joint 2.487500e-04

Joint ci ratio: 2.737499e-01	ci left: 2.184788e-04	ci right 2.888801e-04	k: 204	n:810000
Cons ci ratio: 5.372448e-03	ci left: 3.955307e-01	ci right 3.976626e-01	k: 321243	n:810000
KS ci ratio: 2.737499e-01	ci left: 2.184788e-04	ci right 2.888801e-04	k: 204	n:810000
THSD7B   810000 perm   390 sec   (2075 perm/sec)   p_kst 2.518519e-04   p_cons 3.965963e-01   p_joint 2.518519e-04

Joint ci ratio: 2.711173e-01	ci left: 2.203593e-04	ci right 2.905676e-04	k: 208	n:820000
Cons ci ratio: 5.339506e-03	ci left: 3.955446e-01	ci right 3.976634e-01	k: 325215	n:820000
KS ci ratio: 2.711173e-01	ci left: 2.203593e-04	ci right 2.905676e-04	k: 208	n:820000
THSD7B   820000 perm   398 sec   (2060 perm/sec)   p_kst 2.536585e-04   p_cons 3.966037e-01   p_joint 2.536585e-04

Joint ci ratio: 2.704713e-01	ci left: 2.188274e-04	ci right 2.883532e-04	k: 209	n:830000
Cons ci ratio: 5.307297e-03	ci left: 3.955461e-01	ci right 3.976522e-01	k: 329177	n:830000
KS ci ratio: 2.704713e-01	ci left: 2.188274e-04	ci right 2.883532e-04	k: 209	n:830000
THSD7B   830000 perm   406 sec   (2045 perm/sec)   p_kst 2.518072e-04   p_cons 3.965988e-01   p_joint 2.518072e-04

Joint ci ratio: 2.673074e-01	ci left: 2.217735e-04	ci right 2.912731e-04	k: 214	n:840000
Cons ci ratio: 5.274837e-03	ci left: 3.956226e-01	ci right 3.977162e-01	k: 333202	n:840000
KS ci ratio: 2.673074e-01	ci left: 2.217735e-04	ci right 2.912731e-04	k: 214	n:840000
THSD7B   840000 perm   414 sec   (2030 perm/sec)   p_kst 2.547619e-04   p_cons 3.966690e-01   p_joint 2.547619e-04

Joint ci ratio: 2.660728e-01	ci left: 2.213600e-04	ci right 2.903562e-04	k: 216	n:850000
Cons ci ratio: 5.243984e-03	ci left: 3.956045e-01	ci right 3.976856e-01	k: 337148	n:850000
KS ci ratio: 2.660728e-01	ci left: 2.213600e-04	ci right 2.903562e-04	k: 216	n:850000
THSD7B   850000 perm   422 sec   (2015 perm/sec)   p_kst 2.541176e-04   p_cons 3.966447e-01   p_joint 2.541176e-04

Joint ci ratio: 2.654621e-01	ci left: 2.198714e-04	ci right 2.882201e-04	k: 217	n:860000
Cons ci ratio: 5.212728e-03	ci left: 3.956728e-01	ci right 3.977419e-01	k: 341168	n:860000
KS ci ratio: 2.654621e-01	ci left: 2.198714e-04	ci right 2.882201e-04	k: 217	n:860000
THSD7B   860000 perm   430 sec   (2000 perm/sec)   p_kst 2.523256e-04   p_cons 3.967070e-01   p_joint 2.523256e-04

Joint ci ratio: 2.654625e-01	ci left: 2.173441e-04	ci right 2.849073e-04	k: 217	n:870000
Cons ci ratio: 5.183494e-03	ci left: 3.956040e-01	ci right 3.976611e-01	k: 345070	n:870000
KS ci ratio: 2.654625e-01	ci left: 2.173441e-04	ci right 2.849073e-04	k: 217	n:870000
THSD7B   870000 perm   438 sec   (1986 perm/sec)   p_kst 2.494253e-04   p_cons 3.966322e-01   p_joint 2.494253e-04

Joint ci ratio: 2.636545e-01	ci left: 2.180573e-04	ci right 2.853043e-04	k: 220	n:880000
Cons ci ratio: 5.153717e-03	ci left: 3.956322e-01	ci right 3.976776e-01	k: 349056	n:880000
KS ci ratio: 2.636545e-01	ci left: 2.180573e-04	ci right 2.853043e-04	k: 220	n:880000
THSD7B   880000 perm   446 sec   (1971 perm/sec)   p_kst 2.500000e-04   p_cons 3.966545e-01   p_joint 2.500000e-04

Joint ci ratio: 2.630602e-01	ci left: 2.166566e-04	ci right 2.832963e-04	k: 221	n:890000
Cons ci ratio: 5.125050e-03	ci left: 3.956037e-01	ci right 3.976375e-01	k: 352992	n:890000
KS ci ratio: 2.630602e-01	ci left: 2.166566e-04	ci right 2.832963e-04	k: 221	n:890000
THSD7B   890000 perm   455 sec   (1957 perm/sec)   p_kst 2.483146e-04   p_cons 3.966202e-01   p_joint 2.483146e-04

Joint ci ratio: 2.613005e-01	ci left: 2.173636e-04	ci right 2.837005e-04	k: 224	n:900000
Cons ci ratio: 5.096240e-03	ci left: 3.956335e-01	ci right 3.976560e-01	k: 356980	n:900000
KS ci ratio: 2.613005e-01	ci left: 2.173636e-04	ci right 2.837005e-04	k: 224	n:900000
THSD7B   900000 perm   463 sec   (1944 perm/sec)   p_kst 2.488889e-04   p_cons 3.966444e-01   p_joint 2.488889e-04

Joint ci ratio: 2.601469e-01	ci left: 2.170292e-04	ci right 2.829240e-04	k: 226	n:910000
Cons ci ratio: 5.068015e-03	ci left: 3.956529e-01	ci right 3.976642e-01	k: 360959	n:910000
KS ci ratio: 2.601469e-01	ci left: 2.170292e-04	ci right 2.829240e-04	k: 226	n:910000
THSD7B   910000 perm   471 sec   (1930 perm/sec)   p_kst 2.483516e-04   p_cons 3.966582e-01   p_joint 2.483516e-04

Joint ci ratio: 2.590085e-01	ci left: 2.167026e-04	ci right 2.821638e-04	k: 228	n:920000
Cons ci ratio: 5.040529e-03	ci left: 3.956458e-01	ci right 3.976462e-01	k: 364914	n:920000
KS ci ratio: 2.590085e-01	ci left: 2.167026e-04	ci right 2.821638e-04	k: 228	n:920000
THSD7B   920000 perm   480 sec   (1918 perm/sec)   p_kst 2.478261e-04   p_cons 3.966457e-01   p_joint 2.478261e-04

Joint ci ratio: 2.562260e-01	ci left: 2.194018e-04	ci right 2.848524e-04	k: 233	n:930000
Cons ci ratio: 5.013463e-03	ci left: 3.956410e-01	ci right 3.976306e-01	k: 368871	n:930000
KS ci ratio: 2.562260e-01	ci left: 2.194018e-04	ci right 2.848524e-04	k: 233	n:930000
THSD7B   930000 perm   488 sec   (1905 perm/sec)   p_kst 2.505376e-04   p_cons 3.966355e-01   p_joint 2.505376e-04

Joint ci ratio: 2.545991e-01	ci left: 2.200549e-04	ci right 2.852174e-04	k: 236	n:940000
Cons ci ratio: 4.986695e-03	ci left: 3.956491e-01	ci right 3.976281e-01	k: 372840	n:940000
KS ci ratio: 2.545991e-01	ci left: 2.200549e-04	ci right 2.852174e-04	k: 236	n:940000
THSD7B   940000 perm   497 sec   (1892 perm/sec)   p_kst 2.510638e-04   p_cons 3.966383e-01   p_joint 2.510638e-04

Joint ci ratio: 2.540639e-01	ci left: 2.187241e-04	ci right 2.833348e-04	k: 237	n:950000
Cons ci ratio: 4.960002e-03	ci left: 3.956908e-01	ci right 3.976593e-01	k: 376841	n:950000
KS ci ratio: 2.540639e-01	ci left: 2.187241e-04	ci right 2.833348e-04	k: 237	n:950000
THSD7B   950000 perm   505 sec   (1880 perm/sec)   p_kst 2.494737e-04   p_cons 3.966747e-01   p_joint 2.494737e-04

Joint ci ratio: 2.535320e-01	ci left: 2.174211e-04	ci right 2.814912e-04	k: 238	n:960000
Cons ci ratio: 4.933701e-03	ci left: 3.957347e-01	ci right 3.976930e-01	k: 380845	n:960000
KS ci ratio: 2.535320e-01	ci left: 2.174211e-04	ci right 2.814912e-04	k: 238	n:960000
THSD7B   960000 perm   514 sec   (1867 perm/sec)   p_kst 2.479167e-04   p_cons 3.967135e-01   p_joint 2.479167e-04

Joint ci ratio: 2.530035e-01	ci left: 2.161451e-04	ci right 2.796855e-04	k: 239	n:970000
Cons ci ratio: 4.908755e-03	ci left: 3.956861e-01	ci right 3.976342e-01	k: 384760	n:970000
KS ci ratio: 2.530035e-01	ci left: 2.161451e-04	ci right 2.796855e-04	k: 239	n:970000
THSD7B   970000 perm   523 sec   (1854 perm/sec)   p_kst 2.463918e-04   p_cons 3.966598e-01   p_joint 2.463918e-04

Joint ci ratio: 2.524782e-01	ci left: 2.148953e-04	ci right 2.779165e-04	k: 240	n:980000
Cons ci ratio: 4.883247e-03	ci left: 3.957302e-01	ci right 3.976684e-01	k: 388765	n:980000
KS ci ratio: 2.524782e-01	ci left: 2.148953e-04	ci right 2.779165e-04	k: 240	n:980000
THSD7B   980000 perm   532 sec   (1842 perm/sec)   p_kst 2.448980e-04   p_cons 3.966990e-01   p_joint 2.448980e-04

Joint ci ratio: 2.519562e-01	ci left: 2.136709e-04	ci right 2.761831e-04	k: 241	n:990000
Cons ci ratio: 4.857916e-03	ci left: 3.957947e-01	ci right 3.977231e-01	k: 392791	n:990000
KS ci ratio: 2.519562e-01	ci left: 2.136709e-04	ci right 2.761831e-04	k: 241	n:990000
THSD7B   990000 perm   541 sec   (1830 perm/sec)   p_kst 2.434343e-04   p_cons 3.967586e-01   p_joint 2.434343e-04

Joint ci ratio: 2.498992e-01	ci left: 2.152827e-04	ci right 2.776722e-04	k: 245	n:1000000
Cons ci ratio: 4.833360e-03	ci left: 3.958199e-01	ci right 3.977387e-01	k: 396779	n:1000000
KS ci ratio: 2.498992e-01	ci left: 2.152827e-04	ci right 2.776722e-04	k: 245	n:1000000
THSD7B   1000000 perm   550 sec   (1819 perm/sec)   p_kst 2.450000e-04   p_cons 3.967790e-01   p_joint 2.450000e-04

Joint ci ratio: 2.469059e-01	ci left: 2.187220e-04	ci right 2.812325e-04	k: 251	n:1010000
Cons ci ratio: 4.809818e-03	ci left: 3.957804e-01	ci right 3.976895e-01	k: 400702	n:1010000
KS ci ratio: 2.469059e-01	ci left: 2.187220e-04	ci right 2.812325e-04	k: 251	n:1010000
THSD7B   1010000 perm   559 sec   (1807 perm/sec)   p_kst 2.485149e-04   p_cons 3.967347e-01   p_joint 2.485149e-04

Joint ci ratio: 2.454491e-01	ci left: 2.193374e-04	ci right 2.815976e-04	k: 254	n:1020000
Cons ci ratio: 4.785539e-03	ci left: 3.958494e-01	ci right 3.977492e-01	k: 404735	n:1020000
KS ci ratio: 2.454491e-01	ci left: 2.193374e-04	ci right 2.815976e-04	k: 254	n:1020000
THSD7B   1020000 perm   568 sec   (1795 perm/sec)   p_kst 2.490196e-04   p_cons 3.967990e-01   p_joint 2.490196e-04

Joint ci ratio: 2.454494e-01	ci left: 2.172079e-04	ci right 2.788637e-04	k: 254	n:1030000
Cons ci ratio: 4.761914e-03	ci left: 3.958880e-01	ci right 3.977786e-01	k: 408738	n:1030000
KS ci ratio: 2.454494e-01	ci left: 2.172079e-04	ci right 2.788637e-04	k: 254	n:1030000
THSD7B   1030000 perm   577 sec   (1784 perm/sec)   p_kst 2.466019e-04   p_cons 3.968330e-01   p_joint 2.466019e-04

Joint ci ratio: 2.444925e-01	ci left: 2.169244e-04	ci right 2.782232e-04	k: 256	n:1040000
Cons ci ratio: 4.739349e-03	ci left: 3.958538e-01	ci right 3.977353e-01	k: 412666	n:1040000
KS ci ratio: 2.444925e-01	ci left: 2.169244e-04	ci right 2.782232e-04	k: 256	n:1040000
THSD7B   1040000 perm   587 sec   (1772 perm/sec)   p_kst 2.461538e-04   p_cons 3.967942e-01   p_joint 2.461538e-04

Joint ci ratio: 2.421481e-01	ci left: 2.193301e-04	ci right 2.806251e-04	k: 261	n:1050000
Cons ci ratio: 4.716857e-03	ci left: 3.958450e-01	ci right 3.977175e-01	k: 416620	n:1050000
KS ci ratio: 2.421481e-01	ci left: 2.193301e-04	ci right 2.806251e-04	k: 261	n:1050000
THSD7B   1050000 perm   596 sec   (1761 perm/sec)   p_kst 2.485714e-04   p_cons 3.967810e-01   p_joint 2.485714e-04

Joint ci ratio: 2.412292e-01	ci left: 2.190335e-04	ci right 2.799785e-04	k: 263	n:1060000
Cons ci ratio: 4.693582e-03	ci left: 3.959486e-01	ci right 3.978123e-01	k: 420693	n:1060000
KS ci ratio: 2.412292e-01	ci left: 2.190335e-04	ci right 2.799785e-04	k: 263	n:1060000
THSD7B   1060000 perm   606 sec   (1750 perm/sec)   p_kst 2.481132e-04   p_cons 3.968802e-01   p_joint 2.481132e-04

Joint ci ratio: 2.394220e-01	ci left: 2.204997e-04	ci right 2.813249e-04	k: 267	n:1070000
Cons ci ratio: 4.670730e-03	ci left: 3.960419e-01	ci right 3.978970e-01	k: 424757	n:1070000
KS ci ratio: 2.394220e-01	ci left: 2.204997e-04	ci right 2.813249e-04	k: 267	n:1070000
THSD7B   1070000 perm   615 sec   (1740 perm/sec)   p_kst 2.495327e-04   p_cons 3.969692e-01   p_joint 2.495327e-04

Joint ci ratio: 2.385337e-01	ci left: 2.201990e-04	ci right 2.806825e-04	k: 269	n:1080000
Cons ci ratio: 4.648945e-03	ci left: 3.960576e-01	ci right 3.979040e-01	k: 428739	n:1080000
KS ci ratio: 2.385337e-01	ci left: 2.201990e-04	ci right 2.806825e-04	k: 269	n:1080000
THSD7B   1080000 perm   625 sec   (1729 perm/sec)   p_kst 2.490741e-04   p_cons 3.969806e-01   p_joint 2.490741e-04

Joint ci ratio: 2.385339e-01	ci left: 2.181788e-04	ci right 2.781075e-04	k: 269	n:1090000
Cons ci ratio: 4.627436e-03	ci left: 3.960758e-01	ci right 3.979137e-01	k: 432724	n:1090000
KS ci ratio: 2.385339e-01	ci left: 2.181788e-04	ci right 2.781075e-04	k: 269	n:1090000
THSD7B   1090000 perm   634 sec   (1718 perm/sec)   p_kst 2.467890e-04   p_cons 3.969945e-01   p_joint 2.467890e-04

Joint ci ratio: 2.372196e-01	ci left: 2.187601e-04	ci right 2.784688e-04	k: 272	n:1100000
Cons ci ratio: 4.606800e-03	ci left: 3.960337e-01	ci right 3.978632e-01	k: 436643	n:1100000
KS ci ratio: 2.372196e-01	ci left: 2.187601e-04	ci right 2.784688e-04	k: 272	n:1100000
THSD7B   1100000 perm   644 sec   (1708 perm/sec)   p_kst 2.472727e-04   p_cons 3.969482e-01   p_joint 2.472727e-04

Joint ci ratio: 2.355005e-01	ci left: 2.201795e-04	ci right 2.797766e-04	k: 276	n:1110000
Cons ci ratio: 4.586412e-03	ci left: 3.959951e-01	ci right 3.978163e-01	k: 440565	n:1110000
KS ci ratio: 2.355005e-01	ci left: 2.201795e-04	ci right 2.797766e-04	k: 276	n:1110000
THSD7B   1110000 perm   654 sec   (1698 perm/sec)   p_kst 2.486486e-04   p_cons 3.969054e-01   p_joint 2.486486e-04

Joint ci ratio: 2.350767e-01	ci left: 2.190538e-04	ci right 2.782240e-04	k: 277	n:1120000
Cons ci ratio: 4.565602e-03	ci left: 3.960294e-01	ci right 3.978425e-01	k: 444568	n:1120000
KS ci ratio: 2.350767e-01	ci left: 2.190538e-04	ci right 2.782240e-04	k: 277	n:1120000
THSD7B   1120000 perm   664 sec   (1688 perm/sec)   p_kst 2.473214e-04   p_cons 3.969357e-01   p_joint 2.473214e-04

Joint ci ratio: 2.338184e-01	ci left: 2.196142e-04	ci right 2.785724e-04	k: 280	n:1130000
Cons ci ratio: 4.544451e-03	ci left: 3.961287e-01	ci right 3.979338e-01	k: 448645	n:1130000
KS ci ratio: 2.338184e-01	ci left: 2.196142e-04	ci right 2.785724e-04	k: 280	n:1130000
THSD7B   1130000 perm   673 sec   (1678 perm/sec)   p_kst 2.477876e-04   p_cons 3.970310e-01   p_joint 2.477876e-04

Joint ci ratio: 2.317653e-01	ci left: 2.218180e-04	ci right 2.807700e-04	k: 285	n:1140000
Cons ci ratio: 4.524950e-03	ci left: 3.960824e-01	ci right 3.978795e-01	k: 452558	n:1140000
KS ci ratio: 2.317653e-01	ci left: 2.218180e-04	ci right 2.807700e-04	k: 285	n:1140000
THSD7B   1140000 perm   683 sec   (1669 perm/sec)   p_kst 2.500000e-04   p_cons 3.969807e-01   p_joint 2.500000e-04

Joint ci ratio: 2.317655e-01	ci left: 2.198891e-04	ci right 2.783286e-04	k: 285	n:1150000
Cons ci ratio: 4.505739e-03	ci left: 3.960326e-01	ci right 3.978219e-01	k: 456466	n:1150000
KS ci ratio: 2.317655e-01	ci left: 2.198891e-04	ci right 2.783286e-04	k: 285	n:1150000
THSD7B   1150000 perm   693 sec   (1659 perm/sec)   p_kst 2.478261e-04   p_cons 3.969270e-01   p_joint 2.478261e-04

Joint ci ratio: 2.301615e-01	ci left: 2.212423e-04	ci right 2.795766e-04	k: 289	n:1160000
Cons ci ratio: 4.486319e-03	ci left: 3.960319e-01	ci right 3.978134e-01	k: 460430	n:1160000
KS ci ratio: 2.301615e-01	ci left: 2.212423e-04	ci right 2.795766e-04	k: 289	n:1160000
THSD7B   1160000 perm   703 sec   (1650 perm/sec)   p_kst 2.491379e-04   p_cons 3.969224e-01   p_joint 2.491379e-04

Joint ci ratio: 2.285902e-01	ci left: 2.225738e-04	ci right 2.808020e-04	k: 293	n:1170000
Cons ci ratio: 4.466573e-03	ci left: 3.960928e-01	ci right 3.978667e-01	k: 464466	n:1170000
KS ci ratio: 2.285902e-01	ci left: 2.225738e-04	ci right 2.808020e-04	k: 293	n:1170000
THSD7B   1170000 perm   714 sec   (1640 perm/sec)   p_kst 2.504274e-04   p_cons 3.969795e-01   p_joint 2.504274e-04

Joint ci ratio: 2.266706e-01	ci left: 2.246833e-04	ci right 2.829007e-04	k: 298	n:1180000
Cons ci ratio: 4.447636e-03	ci left: 3.960933e-01	ci right 3.978597e-01	k: 468432	n:1180000
KS ci ratio: 2.266706e-01	ci left: 2.246833e-04	ci right 2.829007e-04	k: 298	n:1180000
THSD7B   1180000 perm   724 sec   (1630 perm/sec)   p_kst 2.525424e-04   p_cons 3.969763e-01   p_joint 2.525424e-04

Joint ci ratio: 2.255419e-01	ci left: 2.251734e-04	ci right 2.831870e-04	k: 301	n:1190000
Cons ci ratio: 4.428744e-03	ci left: 3.961149e-01	ci right 3.978739e-01	k: 472423	n:1190000
KS ci ratio: 2.255419e-01	ci left: 2.251734e-04	ci right 2.831870e-04	k: 301	n:1190000
THSD7B   1190000 perm   734 sec   (1620 perm/sec)   p_kst 2.529412e-04   p_cons 3.969941e-01   p_joint 2.529412e-04

Joint ci ratio: 2.251696e-01	ci left: 2.240832e-04	ci right 2.817074e-04	k: 302	n:1200000
Cons ci ratio: 4.410222e-03	ci left: 3.961219e-01	ci right 3.978736e-01	k: 476397	n:1200000
KS ci ratio: 2.251696e-01	ci left: 2.240832e-04	ci right 2.817074e-04	k: 302	n:1200000
THSD7B   1200000 perm   745 sec   (1611 perm/sec)   p_kst 2.516667e-04   p_cons 3.969975e-01   p_joint 2.516667e-04

Joint ci ratio: 2.240631e-01	ci left: 2.245712e-04	ci right 2.819978e-04	k: 305	n:1210000
Cons ci ratio: 4.391664e-03	ci left: 3.961578e-01	ci right 3.979022e-01	k: 480406	n:1210000
KS ci ratio: 2.240631e-01	ci left: 2.245712e-04	ci right 2.819978e-04	k: 305	n:1210000
THSD7B   1210000 perm   755 sec   (1602 perm/sec)   p_kst 2.520661e-04   p_cons 3.970298e-01   p_joint 2.520661e-04

Joint ci ratio: 2.229727e-01	ci left: 2.250518e-04	ci right 2.822828e-04	k: 308	n:1220000
Cons ci ratio: 4.374364e-03	ci left: 3.960808e-01	ci right 3.978180e-01	k: 484278	n:1220000
KS ci ratio: 2.229727e-01	ci left: 2.250518e-04	ci right 2.822828e-04	k: 308	n:1220000
THSD7B   1220000 perm   766 sec   (1593 perm/sec)   p_kst 2.524590e-04   p_cons 3.969492e-01   p_joint 2.524590e-04

Joint ci ratio: 2.215432e-01	ci left: 2.262931e-04	ci right 2.834206e-04	k: 312	n:1230000
Cons ci ratio: 4.356417e-03	ci left: 3.960986e-01	ci right 3.978287e-01	k: 488265	n:1230000
KS ci ratio: 2.215432e-01	ci left: 2.262931e-04	ci right 2.834206e-04	k: 312	n:1230000
THSD7B   1230000 perm   776 sec   (1585 perm/sec)   p_kst 2.536585e-04   p_cons 3.969634e-01   p_joint 2.536585e-04

Joint ci ratio: 2.201409e-01	ci left: 2.275155e-04	ci right 2.845389e-04	k: 316	n:1240000
Cons ci ratio: 4.338644e-03	ci left: 3.961209e-01	ci right 3.978441e-01	k: 492258	n:1240000
KS ci ratio: 2.201409e-01	ci left: 2.275155e-04	ci right 2.845389e-04	k: 316	n:1240000
THSD7B   1240000 perm   787 sec   (1575 perm/sec)   p_kst 2.548387e-04   p_cons 3.969823e-01   p_joint 2.548387e-04

Joint ci ratio: 2.187649e-01	ci left: 2.287195e-04	ci right 2.856382e-04	k: 320	n:1250000
Cons ci ratio: 4.320950e-03	ci left: 3.961581e-01	ci right 3.978744e-01	k: 496270	n:1250000
KS ci ratio: 2.187649e-01	ci left: 2.287195e-04	ci right 2.856382e-04	k: 320	n:1250000
THSD7B   1250000 perm   798 sec   (1567 perm/sec)   p_kst 2.560000e-04   p_cons 3.970160e-01   p_joint 2.560000e-04

Joint ci ratio: 2.174143e-01	ci left: 2.299055e-04	ci right 2.867189e-04	k: 324	n:1260000
Cons ci ratio: 4.303963e-03	ci left: 3.961400e-01	ci right 3.978494e-01	k: 500213	n:1260000
KS ci ratio: 2.174143e-01	ci left: 2.299055e-04	ci right 2.867189e-04	k: 324	n:1260000
THSD7B   1260000 perm   809 sec   (1558 perm/sec)   p_kst 2.571429e-04   p_cons 3.969944e-01   p_joint 2.571429e-04

Joint ci ratio: 2.170808e-01	ci left: 2.288398e-04	ci right 2.852915e-04	k: 325	n:1270000
Cons ci ratio: 4.287062e-03	ci left: 3.961347e-01	ci right 3.978374e-01	k: 504172	n:1270000
KS ci ratio: 2.170808e-01	ci left: 2.288398e-04	ci right 2.852915e-04	k: 325	n:1270000
THSD7B   1270000 perm   819 sec   (1550 perm/sec)   p_kst 2.559055e-04   p_cons 3.969858e-01   p_joint 2.559055e-04

Joint ci ratio: 2.164180e-01	ci left: 2.285297e-04	ci right 2.847098e-04	k: 327	n:1280000
Cons ci ratio: 4.269572e-03	ci left: 3.962178e-01	ci right 3.979139e-01	k: 508244	n:1280000
KS ci ratio: 2.164180e-01	ci left: 2.285297e-04	ci right 2.847098e-04	k: 327	n:1280000
THSD7B   1280000 perm   831 sec   (1541 perm/sec)   p_kst 2.554687e-04   p_cons 3.970656e-01   p_joint 2.554687e-04

Joint ci ratio: 2.151102e-01	ci left: 2.296914e-04	ci right 2.857708e-04	k: 331	n:1290000
Cons ci ratio: 4.252238e-03	ci left: 3.963059e-01	ci right 3.979954e-01	k: 512324	n:1290000
KS ci ratio: 2.151102e-01	ci left: 2.296914e-04	ci right 2.857708e-04	k: 331	n:1290000
THSD7B   1290000 perm   842 sec   (1533 perm/sec)   p_kst 2.565891e-04   p_cons 3.971504e-01   p_joint 2.565891e-04

Joint ci ratio: 2.141448e-01	ci left: 2.301082e-04	ci right 2.860041e-04	k: 334	n:1300000
Cons ci ratio: 4.235120e-03	ci left: 3.963918e-01	ci right 3.980748e-01	k: 516403	n:1300000
KS ci ratio: 2.141448e-01	ci left: 2.301082e-04	ci right 2.860041e-04	k: 334	n:1300000
THSD7B   1300000 perm   853 sec   (1524 perm/sec)   p_kst 2.569231e-04   p_cons 3.972331e-01   p_joint 2.569231e-04

Joint ci ratio: 2.138260e-01	ci left: 2.290740e-04	ci right 2.846251e-04	k: 335	n:1310000
Cons ci ratio: 4.219216e-03	ci left: 3.963619e-01	ci right 3.980385e-01	k: 520332	n:1310000
KS ci ratio: 2.138260e-01	ci left: 2.290740e-04	ci right 2.846251e-04	k: 335	n:1310000
THSD7B   1310000 perm   864 sec   (1516 perm/sec)   p_kst 2.557252e-04   p_cons 3.972000e-01   p_joint 2.557252e-04

Joint ci ratio: 2.131925e-01	ci left: 2.287728e-04	ci right 2.840649e-04	k: 337	n:1320000
Cons ci ratio: 4.202725e-03	ci left: 3.964196e-01	ci right 3.980899e-01	k: 524376	n:1320000
KS ci ratio: 2.131925e-01	ci left: 2.287728e-04	ci right 2.840649e-04	k: 337	n:1320000
THSD7B   1320000 perm   875 sec   (1508 perm/sec)   p_kst 2.553030e-04   p_cons 3.972545e-01   p_joint 2.553030e-04

Joint ci ratio: 2.119420e-01	ci left: 2.299001e-04	ci right 2.850965e-04	k: 341	n:1330000
Cons ci ratio: 4.186873e-03	ci left: 3.964254e-01	ci right 3.980894e-01	k: 528352	n:1330000
KS ci ratio: 2.119420e-01	ci left: 2.299001e-04	ci right 2.850965e-04	k: 341	n:1330000
THSD7B   1330000 perm   887 sec   (1500 perm/sec)   p_kst 2.563910e-04   p_cons 3.972571e-01   p_joint 2.563910e-04

Joint ci ratio: 2.116329e-01	ci left: 2.288911e-04	ci right 2.837547e-04	k: 342	n:1340000
Cons ci ratio: 4.171368e-03	ci left: 3.964116e-01	ci right 3.980694e-01	k: 532302	n:1340000
KS ci ratio: 2.116329e-01	ci left: 2.288911e-04	ci right 2.837547e-04	k: 342	n:1340000
THSD7B   1340000 perm   898 sec   (1492 perm/sec)   p_kst 2.552239e-04   p_cons 3.972403e-01   p_joint 2.552239e-04

Joint ci ratio: 2.107134e-01	ci left: 2.293003e-04	ci right 2.839924e-04	k: 345	n:1350000
Cons ci ratio: 4.155924e-03	ci left: 3.964107e-01	ci right 3.980623e-01	k: 536269	n:1350000
KS ci ratio: 2.107134e-01	ci left: 2.293003e-04	ci right 2.839924e-04	k: 345	n:1350000
THSD7B   1350000 perm   910 sec   (1484 perm/sec)   p_kst 2.555556e-04   p_cons 3.972363e-01   p_joint 2.555556e-04

Joint ci ratio: 2.101071e-01	ci left: 2.290074e-04	ci right 2.834522e-04	k: 347	n:1360000
Cons ci ratio: 4.140270e-03	ci left: 3.964539e-01	ci right 3.980995e-01	k: 540296	n:1360000
KS ci ratio: 2.101071e-01	ci left: 2.290074e-04	ci right 2.834522e-04	k: 347	n:1360000
THSD7B   1360000 perm   922 sec   (1476 perm/sec)   p_kst 2.551471e-04   p_cons 3.972765e-01   p_joint 2.551471e-04

Joint ci ratio: 2.101073e-01	ci left: 2.273358e-04	ci right 2.813832e-04	k: 347	n:1370000
Cons ci ratio: 4.125413e-03	ci left: 3.964243e-01	ci right 3.980638e-01	k: 544224	n:1370000
KS ci ratio: 2.101073e-01	ci left: 2.273358e-04	ci right 2.813832e-04	k: 347	n:1370000
THSD7B   1370000 perm   933 sec   (1468 perm/sec)   p_kst 2.532847e-04   p_cons 3.972438e-01   p_joint 2.532847e-04

Joint ci ratio: 2.092074e-01	ci left: 2.277482e-04	ci right 2.816321e-04	k: 350	n:1380000
Cons ci ratio: 4.110392e-03	ci left: 3.964327e-01	ci right 3.980663e-01	k: 548204	n:1380000
KS ci ratio: 2.092074e-01	ci left: 2.277482e-04	ci right 2.816321e-04	k: 350	n:1380000
THSD7B   1380000 perm   945 sec   (1461 perm/sec)   p_kst 2.536232e-04   p_cons 3.972493e-01   p_joint 2.536232e-04

Joint ci ratio: 2.086140e-01	ci left: 2.274733e-04	ci right 2.811200e-04	k: 352	n:1390000
Cons ci ratio: 4.095367e-03	ci left: 3.964605e-01	ci right 3.980882e-01	k: 552211	n:1390000
KS ci ratio: 2.086140e-01	ci left: 2.274733e-04	ci right 2.811200e-04	k: 352	n:1390000
THSD7B   1390000 perm   956 sec   (1453 perm/sec)   p_kst 2.532374e-04   p_cons 3.972741e-01   p_joint 2.532374e-04

Joint ci ratio: 2.077331e-01	ci left: 2.278797e-04	ci right 2.813664e-04	k: 355	n:1400000
Cons ci ratio: 4.080701e-03	ci left: 3.964650e-01	ci right 3.980869e-01	k: 556186	n:1400000
KS ci ratio: 2.077331e-01	ci left: 2.278797e-04	ci right 2.813664e-04	k: 355	n:1400000
THSD7B   1400000 perm   968 sec   (1446 perm/sec)   p_kst 2.535714e-04   p_cons 3.972757e-01   p_joint 2.535714e-04

Joint ci ratio: 2.068633e-01	ci left: 2.282807e-04	ci right 2.816088e-04	k: 358	n:1410000
Cons ci ratio: 4.066486e-03	ci left: 3.964347e-01	ci right 3.980508e-01	k: 560112	n:1410000
KS ci ratio: 2.068633e-01	ci left: 2.282807e-04	ci right 2.816088e-04	k: 358	n:1410000
THSD7B   1410000 perm   980 sec   (1438 perm/sec)   p_kst 2.539007e-04   p_cons 3.972426e-01   p_joint 2.539007e-04

Joint ci ratio: 2.060043e-01	ci left: 2.286766e-04	ci right 2.818474e-04	k: 361	n:1420000
Cons ci ratio: 4.051990e-03	ci left: 3.964556e-01	ci right 3.980660e-01	k: 564110	n:1420000
KS ci ratio: 2.060043e-01	ci left: 2.286766e-04	ci right 2.818474e-04	k: 361	n:1420000
THSD7B   1420000 perm   992 sec   (1431 perm/sec)   p_kst 2.542254e-04   p_cons 3.972606e-01   p_joint 2.542254e-04

Joint ci ratio: 2.048754e-01	ci left: 2.297308e-04	ci right 2.828173e-04	k: 365	n:1430000
Cons ci ratio: 4.038078e-03	ci left: 3.964251e-01	ci right 3.980298e-01	k: 568035	n:1430000
KS ci ratio: 2.048754e-01	ci left: 2.297308e-04	ci right 2.828173e-04	k: 365	n:1430000
THSD7B   1430000 perm   1004 sec   (1424 perm/sec)   p_kst 2.552448e-04   p_cons 3.972273e-01   p_joint 2.552448e-04

Joint ci ratio: 2.032162e-01	ci left: 2.320892e-04	ci right 2.852325e-04	k: 371	n:1440000
Cons ci ratio: 4.023999e-03	ci left: 3.964319e-01	ci right 3.980310e-01	k: 572013	n:1440000
KS ci ratio: 2.032162e-01	ci left: 2.320892e-04	ci right 2.852325e-04	k: 371	n:1440000
THSD7B   1440000 perm   1017 sec   (1417 perm/sec)   p_kst 2.576389e-04   p_cons 3.972312e-01   p_joint 2.576389e-04

Joint ci ratio: 2.018640e-01	ci left: 2.337620e-04	ci right 2.868883e-04	k: 376	n:1450000
Cons ci ratio: 4.010130e-03	ci left: 3.964310e-01	ci right 3.980246e-01	k: 575980	n:1450000
KS ci ratio: 2.018640e-01	ci left: 2.337620e-04	ci right 2.868883e-04	k: 376	n:1450000
THSD7B   1450000 perm   1029 sec   (1409 perm/sec)   p_kst 2.593103e-04   p_cons 3.972276e-01   p_joint 2.593103e-04

Joint ci ratio: 2.002763e-01	ci left: 2.360636e-04	ci right 2.892395e-04	k: 382	n:1460000
Cons ci ratio: 3.996129e-03	ci left: 3.964630e-01	ci right 3.980511e-01	k: 579995	n:1460000
KS ci ratio: 2.002763e-01	ci left: 2.360636e-04	ci right 2.892395e-04	k: 382	n:1460000
THSD7B   1460000 perm   1041 sec   (1402 perm/sec)   p_kst 2.616438e-04   p_cons 3.972568e-01   p_joint 2.616438e-04

Joint ci ratio: 1.992385e-01	ci left: 2.370428e-04	ci right 2.901288e-04	k: 386	n:1470000
Cons ci ratio: 3.982726e-03	ci left: 3.964401e-01	ci right 3.980229e-01	k: 583930	n:1470000
KS ci ratio: 1.992385e-01	ci left: 2.370428e-04	ci right 2.901288e-04	k: 386	n:1470000
THSD7B   1470000 perm   1054 sec   (1395 perm/sec)   p_kst 2.625850e-04   p_cons 3.972313e-01   p_joint 2.625850e-04

Joint ci ratio: 1.987257e-01	ci left: 2.367252e-04	ci right 2.895871e-04	k: 388	n:1480000
Cons ci ratio: 3.968707e-03	ci left: 3.965081e-01	ci right 3.980855e-01	k: 587999	n:1480000
KS ci ratio: 1.987257e-01	ci left: 2.367252e-04	ci right 2.895871e-04	k: 388	n:1480000
THSD7B   1480000 perm   1067 sec   (1388 perm/sec)   p_kst 2.621622e-04   p_cons 3.972966e-01   p_joint 2.621622e-04

Joint ci ratio: 1.974606e-01	ci left: 2.383257e-04	ci right 2.911655e-04	k: 393	n:1490000
Cons ci ratio: 3.955017e-03	ci left: 3.965531e-01	ci right 3.981252e-01	k: 592035	n:1490000
KS ci ratio: 1.974606e-01	ci left: 2.383257e-04	ci right 2.911655e-04	k: 393	n:1490000
THSD7B   1490000 perm   1079 sec   (1381 perm/sec)   p_kst 2.637584e-04   p_cons 3.973389e-01   p_joint 2.637584e-04

Joint ci ratio: 1.962193e-01	ci left: 2.399059e-04	ci right 2.927217e-04	k: 398	n:1500000
Cons ci ratio: 3.941814e-03	ci left: 3.965554e-01	ci right 3.981223e-01	k: 596008	n:1500000
KS ci ratio: 1.962193e-01	ci left: 2.399059e-04	ci right 2.927217e-04	k: 398	n:1500000
THSD7B   1500000 perm   1092 sec   (1374 perm/sec)   p_kst 2.653333e-04   p_cons 3.973387e-01   p_joint 2.653333e-04

Joint ci ratio: 1.957294e-01	ci left: 2.395767e-04	ci right 2.921726e-04	k: 400	n:1510000
Cons ci ratio: 3.928834e-03	ci left: 3.965465e-01	ci right 3.981082e-01	k: 599964	n:1510000
KS ci ratio: 1.957294e-01	ci left: 2.395767e-04	ci right 2.921726e-04	k: 400	n:1510000
THSD7B   1510000 perm   1105 sec   (1367 perm/sec)   p_kst 2.649007e-04   p_cons 3.973272e-01   p_joint 2.649007e-04

Joint ci ratio: 1.954859e-01	ci left: 2.386262e-04	ci right 2.909405e-04	k: 401	n:1520000
Cons ci ratio: 3.915977e-03	ci left: 3.965384e-01	ci right 3.980949e-01	k: 603921	n:1520000
KS ci ratio: 1.954859e-01	ci left: 2.386262e-04	ci right 2.909405e-04	k: 401	n:1520000
THSD7B   1520000 perm   1117 sec   (1360 perm/sec)   p_kst 2.638158e-04   p_cons 3.973164e-01   p_joint 2.638158e-04

Joint ci ratio: 1.952433e-01	ci left: 2.376881e-04	ci right 2.897245e-04	k: 402	n:1530000
Cons ci ratio: 3.903293e-03	ci left: 3.965245e-01	ci right 3.980759e-01	k: 607869	n:1530000
KS ci ratio: 1.952433e-01	ci left: 2.376881e-04	ci right 2.897245e-04	k: 402	n:1530000
THSD7B   1530000 perm   1130 sec   (1354 perm/sec)   p_kst 2.627451e-04   p_cons 3.973000e-01   p_joint 2.627451e-04

Joint ci ratio: 1.945206e-01	ci left: 2.379977e-04	ci right 2.898861e-04	k: 405	n:1540000
Cons ci ratio: 3.756453e-03	ci left: 4.134407e-01	ci right 4.149973e-01	k: 637897	n:1540000
KS ci ratio: 1.945206e-01	ci left: 2.379977e-04	ci right 2.898861e-04	k: 405	n:1540000
THSD7B   1540000 perm   1143 sec   (1347 perm/sec)   p_kst 2.629870e-04   p_cons 4.142188e-01   p_joint 2.629870e-04

Joint ci ratio: 1.938059e-01	ci left: 2.383036e-04	ci right 2.900453e-04	k: 408	n:1550000
Cons ci ratio: 3.744068e-03	ci left: 4.134753e-01	ci right 4.150269e-01	k: 642089	n:1550000
KS ci ratio: 1.938059e-01	ci left: 2.383036e-04	ci right 2.900453e-04	k: 408	n:1550000
THSD7B   1550000 perm   1156 sec   (1341 perm/sec)   p_kst 2.632258e-04   p_cons 4.142510e-01   p_joint 2.632258e-04

Joint ci ratio: 1.926319e-01	ci left: 2.398262e-04	ci right 2.915460e-04	k: 413	n:1560000
Cons ci ratio: 3.731888e-03	ci left: 4.134986e-01	ci right 4.150453e-01	k: 646264	n:1560000
KS ci ratio: 1.926319e-01	ci left: 2.398262e-04	ci right 2.915460e-04	k: 413	n:1560000
THSD7B   1560000 perm   1169 sec   (1334 perm/sec)   p_kst 2.647436e-04   p_cons 4.142718e-01   p_joint 2.647436e-04

Joint ci ratio: 1.921683e-01	ci left: 2.395111e-04	ci right 2.910242e-04	k: 415	n:1570000
Cons ci ratio: 3.719812e-03	ci left: 4.135236e-01	ci right 4.150653e-01	k: 650442	n:1570000
KS ci ratio: 1.921683e-01	ci left: 2.395111e-04	ci right 2.910242e-04	k: 415	n:1570000
THSD7B   1570000 perm   1183 sec   (1328 perm/sec)   p_kst 2.643312e-04   p_cons 4.142943e-01   p_joint 2.643312e-04

Joint ci ratio: 1.914791e-01	ci left: 2.398028e-04	ci right 2.911721e-04	k: 418	n:1580000
Cons ci ratio: 3.708104e-03	ci left: 4.135153e-01	ci right 4.150521e-01	k: 654568	n:1580000
KS ci ratio: 1.914791e-01	ci left: 2.398028e-04	ci right 2.911721e-04	k: 418	n:1580000
THSD7B   1580000 perm   1196 sec   (1321 perm/sec)   p_kst 2.645570e-04   p_cons 4.142835e-01   p_joint 2.645570e-04

Joint ci ratio: 1.910238e-01	ci left: 2.394922e-04	ci right 2.906589e-04	k: 420	n:1590000
Cons ci ratio: 3.696534e-03	ci left: 4.135034e-01	ci right 4.150353e-01	k: 658688	n:1590000
KS ci ratio: 1.910238e-01	ci left: 2.394922e-04	ci right 2.906589e-04	k: 420	n:1590000
THSD7B   1590000 perm   1209 sec   (1315 perm/sec)   p_kst 2.641509e-04   p_cons 4.142692e-01   p_joint 2.641509e-04

Joint ci ratio: 1.901226e-01	ci left: 2.403761e-04	ci right 2.914614e-04	k: 424	n:1600000
Cons ci ratio: 3.685025e-03	ci left: 4.134978e-01	ci right 4.150250e-01	k: 662818	n:1600000
KS ci ratio: 1.901226e-01	ci left: 2.403761e-04	ci right 2.914614e-04	k: 424	n:1600000
THSD7B   1600000 perm   1222 sec   (1309 perm/sec)   p_kst 2.650000e-04   p_cons 4.142613e-01   p_joint 2.650000e-04

Joint ci ratio: 1.894551e-01	ci left: 2.406579e-04	ci right 2.916028e-04	k: 427	n:1610000
Cons ci ratio: 3.673467e-03	ci left: 4.135129e-01	ci right 4.150353e-01	k: 666981	n:1610000
KS ci ratio: 1.894551e-01	ci left: 2.406579e-04	ci right 2.916028e-04	k: 427	n:1610000
THSD7B   1610000 perm   1236 sec   (1303 perm/sec)   p_kst 2.652174e-04   p_cons 4.142739e-01   p_joint 2.652174e-04

Joint ci ratio: 1.890140e-01	ci left: 2.403485e-04	ci right 2.910958e-04	k: 429	n:1620000
Cons ci ratio: 3.662138e-03	ci left: 4.135117e-01	ci right 4.150294e-01	k: 671118	n:1620000
KS ci ratio: 1.890140e-01	ci left: 2.403485e-04	ci right 2.910958e-04	k: 429	n:1620000
THSD7B   1620000 perm   1249 sec   (1297 perm/sec)   p_kst 2.648148e-04   p_cons 4.142704e-01   p_joint 2.648148e-04

Joint ci ratio: 1.885760e-01	ci left: 2.400430e-04	ci right 2.905949e-04	k: 431	n:1630000
Cons ci ratio: 3.650854e-03	ci left: 4.135185e-01	ci right 4.150315e-01	k: 675268	n:1630000
KS ci ratio: 1.885760e-01	ci left: 2.400430e-04	ci right 2.905949e-04	k: 431	n:1630000
THSD7B   1630000 perm   1263 sec   (1291 perm/sec)   p_kst 2.644172e-04   p_cons 4.142748e-01   p_joint 2.644172e-04

Joint ci ratio: 1.881411e-01	ci left: 2.397413e-04	ci right 2.900999e-04	k: 433	n:1640000
Cons ci ratio: 3.639664e-03	ci left: 4.135264e-01	ci right 4.150349e-01	k: 679420	n:1640000
KS ci ratio: 1.881411e-01	ci left: 2.397413e-04	ci right 2.900999e-04	k: 433	n:1640000
THSD7B   1640000 perm   1276 sec   (1285 perm/sec)   p_kst 2.640244e-04   p_cons 4.142805e-01   p_joint 2.640244e-04

Joint ci ratio: 1.879248e-01	ci left: 2.388658e-04	ci right 2.889763e-04	k: 434	n:1650000
Cons ci ratio: 3.628377e-03	ci left: 4.135609e-01	ci right 4.150648e-01	k: 683616	n:1650000
KS ci ratio: 1.879248e-01	ci left: 2.388658e-04	ci right 2.889763e-04	k: 434	n:1650000
THSD7B   1650000 perm   1290 sec   (1279 perm/sec)   p_kst 2.630303e-04   p_cons 4.143127e-01   p_joint 2.630303e-04

Joint ci ratio: 1.877092e-01	ci left: 2.380010e-04	ci right 2.878662e-04	k: 435	n:1660000
Cons ci ratio: 3.617629e-03	ci left: 4.135366e-01	ci right 4.150359e-01	k: 687715	n:1660000
KS ci ratio: 1.877092e-01	ci left: 2.380010e-04	ci right 2.878662e-04	k: 435	n:1660000
THSD7B   1660000 perm   1304 sec   (1273 perm/sec)   p_kst 2.620482e-04   p_cons 4.142861e-01   p_joint 2.620482e-04

Joint ci ratio: 1.872802e-01	ci left: 2.377172e-04	ci right 2.873962e-04	k: 437	n:1670000
Cons ci ratio: 3.607213e-03	ci left: 4.134809e-01	ci right 4.149757e-01	k: 691761	n:1670000
KS ci ratio: 1.872802e-01	ci left: 2.377172e-04	ci right 2.873962e-04	k: 437	n:1670000
THSD7B   1670000 perm   1318 sec   (1267 perm/sec)   p_kst 2.616766e-04   p_cons 4.142281e-01   p_joint 2.616766e-04

Joint ci ratio: 1.866421e-01	ci left: 2.380043e-04	ci right 2.875547e-04	k: 440	n:1680000
Cons ci ratio: 3.596635e-03	ci left: 4.134598e-01	ci right 4.149501e-01	k: 695864	n:1680000
KS ci ratio: 1.866421e-01	ci left: 2.380043e-04	ci right 2.875547e-04	k: 440	n:1680000
THSD7B   1680000 perm   1331 sec   (1262 perm/sec)   p_kst 2.619048e-04   p_cons 4.142048e-01   p_joint 2.619048e-04

Joint ci ratio: 1.864309e-01	ci left: 2.371601e-04	ci right 2.864725e-04	k: 441	n:1690000
Cons ci ratio: 3.586061e-03	ci left: 4.134507e-01	ci right 4.149366e-01	k: 699987	n:1690000
KS ci ratio: 1.864309e-01	ci left: 2.371601e-04	ci right 2.864725e-04	k: 441	n:1690000
THSD7B   1690000 perm   1345 sec   (1256 perm/sec)   p_kst 2.609467e-04   p_cons 4.141935e-01   p_joint 2.609467e-04

Joint ci ratio: 1.853852e-01	ci left: 2.385694e-04	ci right 2.878652e-04	k: 446	n:1700000
Cons ci ratio: 3.575858e-03	ci left: 4.134041e-01	ci right 4.148856e-01	k: 704046	n:1700000
KS ci ratio: 1.853852e-01	ci left: 2.385694e-04	ci right 2.878652e-04	k: 446	n:1700000
THSD7B   1700000 perm   1359 sec   (1250 perm/sec)   p_kst 2.623529e-04   p_cons 4.141447e-01   p_joint 2.623529e-04

Joint ci ratio: 1.851783e-01	ci left: 2.377319e-04	ci right 2.867937e-04	k: 447	n:1710000
Cons ci ratio: 3.565754e-03	ci left: 4.133563e-01	ci right 4.148334e-01	k: 708102	n:1710000
KS ci ratio: 1.851783e-01	ci left: 2.377319e-04	ci right 2.867937e-04	k: 447	n:1710000
THSD7B   1710000 perm   1373 sec   (1245 perm/sec)   p_kst 2.614035e-04   p_cons 4.140947e-01   p_joint 2.614035e-04

Joint ci ratio: 1.849720e-01	ci left: 2.369042e-04	ci right 2.857346e-04	k: 448	n:1720000
Cons ci ratio: 3.555365e-03	ci left: 4.133597e-01	ci right 4.148325e-01	k: 712245	n:1720000
KS ci ratio: 1.849720e-01	ci left: 2.369042e-04	ci right 2.857346e-04	k: 448	n:1720000
THSD7B   1720000 perm   1387 sec   (1240 perm/sec)   p_kst 2.604651e-04   p_cons 4.140959e-01   p_joint 2.604651e-04

Joint ci ratio: 1.845615e-01	ci left: 2.366374e-04	ci right 2.852925e-04	k: 450	n:1730000
Cons ci ratio: 3.545036e-03	ci left: 4.133670e-01	ci right 4.148356e-01	k: 716395	n:1730000
KS ci ratio: 1.845615e-01	ci left: 2.366374e-04	ci right 2.852925e-04	k: 450	n:1730000
THSD7B   1730000 perm   1401 sec   (1235 perm/sec)   p_kst 2.601156e-04   p_cons 4.141012e-01   p_joint 2.601156e-04

Joint ci ratio: 1.845616e-01	ci left: 2.352774e-04	ci right 2.836529e-04	k: 450	n:1740000
Cons ci ratio: 3.534541e-03	ci left: 4.134093e-01	ci right 4.148737e-01	k: 720606	n:1740000
KS ci ratio: 1.845616e-01	ci left: 2.352774e-04	ci right 2.836529e-04	k: 450	n:1740000
THSD7B   1740000 perm   1416 sec   (1229 perm/sec)   p_kst 2.586207e-04   p_cons 4.141414e-01   p_joint 2.586207e-04

Joint ci ratio: 1.843574e-01	ci left: 2.344780e-04	ci right 2.826298e-04	k: 451	n:1750000
Cons ci ratio: 3.524007e-03	ci left: 4.134695e-01	ci right 4.149297e-01	k: 724849	n:1750000
KS ci ratio: 1.843574e-01	ci left: 2.344780e-04	ci right 2.826298e-04	k: 451	n:1750000
THSD7B   1750000 perm   1430 sec   (1224 perm/sec)   p_kst 2.577143e-04   p_cons 4.141994e-01   p_joint 2.577143e-04

Joint ci ratio: 1.839509e-01	ci left: 2.342297e-04	ci right 2.822126e-04	k: 453	n:1760000
Cons ci ratio: 3.514100e-03	ci left: 4.134551e-01	ci right 4.149111e-01	k: 728962	n:1760000
KS ci ratio: 1.839509e-01	ci left: 2.342297e-04	ci right 2.822126e-04	k: 453	n:1760000
THSD7B   1760000 perm   1444 sec   (1219 perm/sec)   p_kst 2.573864e-04   p_cons 4.141830e-01   p_joint 2.573864e-04

Joint ci ratio: 1.837488e-01	ci left: 2.334453e-04	ci right 2.812092e-04	k: 454	n:1770000
Cons ci ratio: 3.503763e-03	ci left: 4.135120e-01	ci right 4.149640e-01	k: 733201	n:1770000
KS ci ratio: 1.837488e-01	ci left: 2.334453e-04	ci right 2.812092e-04	k: 454	n:1770000
THSD7B   1770000 perm   1459 sec   (1213 perm/sec)   p_kst 2.564972e-04   p_cons 4.142379e-01   p_joint 2.564972e-04

Joint ci ratio: 1.831460e-01	ci left: 2.337418e-04	ci right 2.813921e-04	k: 457	n:1780000
Cons ci ratio: 3.493836e-03	ci left: 4.135240e-01	ci right 4.149718e-01	k: 737361	n:1780000
KS ci ratio: 1.831460e-01	ci left: 2.337418e-04	ci right 2.813921e-04	k: 457	n:1780000
THSD7B   1780000 perm   1473 sec   (1208 perm/sec)   p_kst 2.567416e-04   p_cons 4.142478e-01   p_joint 2.567416e-04

Joint ci ratio: 1.821542e-01	ci left: 2.351016e-04	ci right 2.827409e-04	k: 462	n:1790000
Cons ci ratio: 3.483664e-03	ci left: 4.135816e-01	ci right 4.150254e-01	k: 741603	n:1790000
KS ci ratio: 1.821542e-01	ci left: 2.351016e-04	ci right 2.827409e-04	k: 462	n:1790000
THSD7B   1790000 perm   1488 sec   (1203 perm/sec)   p_kst 2.581006e-04   p_cons 4.143034e-01   p_joint 2.581006e-04

Joint ci ratio: 1.821544e-01	ci left: 2.337955e-04	ci right 2.811701e-04	k: 462	n:1800000
Cons ci ratio: 3.474073e-03	ci left: 4.135697e-01	ci right 4.150095e-01	k: 745721	n:1800000
KS ci ratio: 1.821544e-01	ci left: 2.337955e-04	ci right 2.811701e-04	k: 462	n:1800000
THSD7B   1800000 perm   1503 sec   (1198 perm/sec)   p_kst 2.566667e-04   p_cons 4.142894e-01   p_joint 2.566667e-04

Joint ci ratio: 1.809853e-01	ci left: 2.356681e-04	ci right 2.830821e-04	k: 468	n:1810000
Cons ci ratio: 3.464269e-03	ci left: 4.135988e-01	ci right 4.150346e-01	k: 749913	n:1810000
KS ci ratio: 1.809853e-01	ci left: 2.356681e-04	ci right 2.830821e-04	k: 468	n:1810000
THSD7B   1810000 perm   1518 sec   (1193 perm/sec)   p_kst 2.585635e-04   p_cons 4.143166e-01   p_joint 2.585635e-04

Joint ci ratio: 1.806006e-01	ci left: 2.354224e-04	ci right 2.826753e-04	k: 470	n:1820000
Cons ci ratio: 3.454376e-03	ci left: 4.136518e-01	ci right 4.150837e-01	k: 754149	n:1820000
KS ci ratio: 1.806006e-01	ci left: 2.354224e-04	ci right 2.826753e-04	k: 470	n:1820000
THSD7B   1820000 perm   1532 sec   (1188 perm/sec)   p_kst 2.582418e-04   p_cons 4.143676e-01   p_joint 2.582418e-04

Joint ci ratio: 1.802184e-01	ci left: 2.351794e-04	ci right 2.822728e-04	k: 472	n:1830000
Cons ci ratio: 3.444734e-03	ci left: 4.136807e-01	ci right 4.151087e-01	k: 758342	n:1830000
KS ci ratio: 1.802184e-01	ci left: 2.351794e-04	ci right 2.822728e-04	k: 472	n:1830000
THSD7B   1830000 perm   1547 sec   (1183 perm/sec)   p_kst 2.579235e-04   p_cons 4.143945e-01   p_joint 2.579235e-04

Joint ci ratio: 1.798387e-01	ci left: 2.349393e-04	ci right 2.818746e-04	k: 474	n:1840000
Cons ci ratio: 3.435302e-03	ci left: 4.136908e-01	ci right 4.151149e-01	k: 762501	n:1840000
KS ci ratio: 1.798387e-01	ci left: 2.349393e-04	ci right 2.818746e-04	k: 474	n:1840000
THSD7B   1840000 perm   1563 sec   (1178 perm/sec)   p_kst 2.576087e-04   p_cons 4.144027e-01   p_joint 2.576087e-04

Joint ci ratio: 1.787133e-01	ci left: 2.367671e-04	ci right 2.837395e-04	k: 480	n:1850000
Cons ci ratio: 3.426055e-03	ci left: 4.136857e-01	ci right 4.151059e-01	k: 766632	n:1850000
KS ci ratio: 1.787133e-01	ci left: 2.367671e-04	ci right 2.837395e-04	k: 480	n:1850000
THSD7B   1850000 perm   1578 sec   (1173 perm/sec)   p_kst 2.594595e-04   p_cons 4.143957e-01   p_joint 2.594595e-04

Joint ci ratio: 1.779748e-01	ci left: 2.375487e-04	ci right 2.844605e-04	k: 484	n:1860000
Cons ci ratio: 3.416552e-03	ci left: 4.137274e-01	ci right 4.151438e-01	k: 770850	n:1860000
KS ci ratio: 1.779748e-01	ci left: 2.375487e-04	ci right 2.844605e-04	k: 484	n:1860000
THSD7B   1860000 perm   1593 sec   (1168 perm/sec)   p_kst 2.602151e-04   p_cons 4.144355e-01   p_joint 2.602151e-04

Joint ci ratio: 1.776090e-01	ci left: 2.373003e-04	ci right 2.840564e-04	k: 486	n:1870000
Cons ci ratio: 3.407665e-03	ci left: 4.136922e-01	ci right 4.151048e-01	k: 774925	n:1870000
KS ci ratio: 1.776090e-01	ci left: 2.373003e-04	ci right 2.840564e-04	k: 486	n:1870000
THSD7B   1870000 perm   1609 sec   (1163 perm/sec)   p_kst 2.598930e-04   p_cons 4.143984e-01   p_joint 2.598930e-04

Joint ci ratio: 1.774270e-01	ci left: 2.365463e-04	ci right 2.831010e-04	k: 487	n:1880000
Cons ci ratio: 3.398721e-03	ci left: 4.136755e-01	ci right 4.150844e-01	k: 779034	n:1880000
KS ci ratio: 1.774270e-01	ci left: 2.365463e-04	ci right 2.831010e-04	k: 487	n:1880000
THSD7B   1880000 perm   1624 sec   (1157 perm/sec)   p_kst 2.590426e-04   p_cons 4.143798e-01   p_joint 2.590426e-04

Joint ci ratio: 1.772455e-01	ci left: 2.358003e-04	ci right 2.821557e-04	k: 488	n:1890000
Cons ci ratio: 3.389443e-03	ci left: 4.137166e-01	ci right 4.151218e-01	k: 783252	n:1890000
KS ci ratio: 1.772455e-01	ci left: 2.358003e-04	ci right 2.821557e-04	k: 488	n:1890000
THSD7B   1890000 perm   1640 sec   (1153 perm/sec)   p_kst 2.582011e-04   p_cons 4.144190e-01   p_joint 2.582011e-04

Joint ci ratio: 1.768842e-01	ci left: 2.355653e-04	ci right 2.817699e-04	k: 490	n:1900000
Cons ci ratio: 3.380245e-03	ci left: 4.137568e-01	ci right 4.151582e-01	k: 787469	n:1900000
KS ci ratio: 1.768842e-01	ci left: 2.355653e-04	ci right 2.817699e-04	k: 490	n:1900000
THSD7B   1900000 perm   1655 sec   (1148 perm/sec)   p_kst 2.578947e-04   p_cons 4.144574e-01   p_joint 2.578947e-04

Joint ci ratio: 1.758131e-01	ci left: 2.373347e-04	ci right 2.835745e-04	k: 496	n:1910000
Cons ci ratio: 3.371885e-03	ci left: 4.136866e-01	ci right 4.150843e-01	k: 791476	n:1910000
KS ci ratio: 1.758131e-01	ci left: 2.373347e-04	ci right 2.835745e-04	k: 496	n:1910000
THSD7B   1910000 perm   1671 sec   (1143 perm/sec)   p_kst 2.596859e-04   p_cons 4.143853e-01   p_joint 2.596859e-04

Joint ci ratio: 1.752849e-01	ci left: 2.375924e-04	ci right 2.837286e-04	k: 499	n:1920000
Cons ci ratio: 3.362843e-03	ci left: 4.137244e-01	ci right 4.151185e-01	k: 795689	n:1920000
KS ci ratio: 1.752849e-01	ci left: 2.375924e-04	ci right 2.837286e-04	k: 499	n:1920000
THSD7B   1920000 perm   1686 sec   (1139 perm/sec)   p_kst 2.598958e-04   p_cons 4.144214e-01   p_joint 2.598958e-04

Joint ci ratio: 1.747613e-01	ci left: 2.378477e-04	ci right 2.838810e-04	k: 502	n:1930000
Cons ci ratio: 3.354070e-03	ci left: 4.137334e-01	ci right 4.151239e-01	k: 799847	n:1930000
KS ci ratio: 1.747613e-01	ci left: 2.378477e-04	ci right 2.838810e-04	k: 502	n:1930000
THSD7B   1930000 perm   1702 sec   (1134 perm/sec)   p_kst 2.601036e-04   p_cons 4.144285e-01   p_joint 2.601036e-04

Joint ci ratio: 1.745880e-01	ci left: 2.371146e-04	ci right 2.829556e-04	k: 503	n:1940000
Cons ci ratio: 3.345433e-03	ci left: 4.137324e-01	ci right 4.151194e-01	k: 803986	n:1940000
KS ci ratio: 1.745880e-01	ci left: 2.371146e-04	ci right 2.829556e-04	k: 503	n:1940000
THSD7B   1940000 perm   1717 sec   (1130 perm/sec)   p_kst 2.592784e-04   p_cons 4.144258e-01   p_joint 2.592784e-04

Joint ci ratio: 1.742426e-01	ci left: 2.368795e-04	ci right 2.825750e-04	k: 505	n:1950000
Cons ci ratio: 3.336930e-03	ci left: 4.137218e-01	ci right 4.151051e-01	k: 808106	n:1950000
KS ci ratio: 1.742426e-01	ci left: 2.368795e-04	ci right 2.825750e-04	k: 505	n:1950000
THSD7B   1950000 perm   1733 sec   (1125 perm/sec)   p_kst 2.589744e-04   p_cons 4.144133e-01   p_joint 2.589744e-04

Joint ci ratio: 1.738993e-01	ci left: 2.366468e-04	ci right 2.821981e-04	k: 507	n:1960000
Cons ci ratio: 3.328533e-03	ci left: 4.137051e-01	ci right 4.150849e-01	k: 812214	n:1960000
KS ci ratio: 1.738993e-01	ci left: 2.366468e-04	ci right 2.821981e-04	k: 507	n:1960000
THSD7B   1960000 perm   1749 sec   (1121 perm/sec)   p_kst 2.586735e-04   p_cons 4.143949e-01   p_joint 2.586735e-04

Joint ci ratio: 1.733881e-01	ci left: 2.369022e-04	ci right 2.823546e-04	k: 510	n:1970000
Cons ci ratio: 3.320383e-03	ci left: 4.136617e-01	ci right 4.150380e-01	k: 816269	n:1970000
KS ci ratio: 1.733881e-01	ci left: 2.369022e-04	ci right 2.823546e-04	k: 510	n:1970000
THSD7B   1970000 perm   1764 sec   (1116 perm/sec)   p_kst 2.588832e-04   p_cons 4.143497e-01   p_joint 2.588832e-04

Joint ci ratio: 1.730498e-01	ci left: 2.366721e-04	ci right 2.819824e-04	k: 512	n:1980000
Cons ci ratio: 3.311738e-03	ci left: 4.137001e-01	ci right 4.150729e-01	k: 820485	n:1980000
KS ci ratio: 1.730498e-01	ci left: 2.366721e-04	ci right 2.819824e-04	k: 512	n:1980000
THSD7B   1980000 perm   1780 sec   (1112 perm/sec)   p_kst 2.585859e-04   p_cons 4.143864e-01   p_joint 2.585859e-04

Joint ci ratio: 1.723790e-01	ci left: 2.374059e-04	ci right 2.826622e-04	k: 516	n:1990000
Cons ci ratio: 3.303546e-03	ci left: 4.136813e-01	ci right 4.150506e-01	k: 824588	n:1990000
KS ci ratio: 1.723790e-01	ci left: 2.374059e-04	ci right 2.826622e-04	k: 516	n:1990000
THSD7B   1990000 perm   1796 sec   (1108 perm/sec)   p_kst 2.592965e-04   p_cons 4.143658e-01   p_joint 2.592965e-04

Joint ci ratio: 1.722126e-01	ci left: 2.366973e-04	ci right 2.817705e-04	k: 517	n:2000000
Cons ci ratio: 3.294946e-03	ci left: 4.137316e-01	ci right 4.150976e-01	k: 828829	n:2000000
KS ci ratio: 1.722126e-01	ci left: 2.366973e-04	ci right 2.817705e-04	k: 517	n:2000000
THSD7B   2000000 perm   1812 sec   (1103 perm/sec)   p_kst 2.585000e-04   p_cons 4.144145e-01   p_joint 2.585000e-04

Joint ci ratio: 1.720466e-01	ci left: 2.359958e-04	ci right 2.808876e-04	k: 518	n:2010000
Cons ci ratio: 3.286700e-03	ci left: 4.137392e-01	ci right 4.151018e-01	k: 832985	n:2010000
KS ci ratio: 1.720466e-01	ci left: 2.359958e-04	ci right 2.808876e-04	k: 518	n:2010000
THSD7B   2010000 perm   1829 sec   (1099 perm/sec)   p_kst 2.577114e-04   p_cons 4.144204e-01   p_joint 2.577114e-04

Joint ci ratio: 1.717161e-01	ci left: 2.357750e-04	ci right 2.805297e-04	k: 520	n:2020000
Cons ci ratio: 3.278582e-03	ci left: 4.137369e-01	ci right 4.150960e-01	k: 837121	n:2020000
KS ci ratio: 1.717161e-01	ci left: 2.357750e-04	ci right 2.805297e-04	k: 520	n:2020000
THSD7B   2020000 perm   1845 sec   (1095 perm/sec)   p_kst 2.574257e-04   p_cons 4.144163e-01   p_joint 2.574257e-04

Joint ci ratio: 1.715516e-01	ci left: 2.350850e-04	ci right 2.796615e-04	k: 521	n:2030000
Cons ci ratio: 3.270437e-03	ci left: 4.137473e-01	ci right 4.151032e-01	k: 841283	n:2030000
KS ci ratio: 1.715516e-01	ci left: 2.350850e-04	ci right 2.796615e-04	k: 521	n:2030000
THSD7B   2030000 perm   1861 sec   (1091 perm/sec)   p_kst 2.566502e-04   p_cons 4.144251e-01   p_joint 2.566502e-04

Joint ci ratio: 1.713876e-01	ci left: 2.344018e-04	ci right 2.788019e-04	k: 522	n:2040000
Cons ci ratio: 3.262327e-03	ci left: 4.137616e-01	ci right 4.151141e-01	k: 845453	n:2040000
KS ci ratio: 1.713876e-01	ci left: 2.344018e-04	ci right 2.788019e-04	k: 522	n:2040000
THSD7B   2040000 perm   1877 sec   (1087 perm/sec)   p_kst 2.558824e-04   p_cons 4.144377e-01   p_joint 2.558824e-04

Joint ci ratio: 1.708982e-01	ci left: 2.346591e-04	ci right 2.789679e-04	k: 525	n:2050000
Cons ci ratio: 3.254316e-03	ci left: 4.137699e-01	ci right 4.151191e-01	k: 849611	n:2050000
KS ci ratio: 1.708982e-01	ci left: 2.346591e-04	ci right 2.789679e-04	k: 525	n:2050000
THSD7B   2050000 perm   1894 sec   (1082 perm/sec)   p_kst 2.560976e-04   p_cons 4.144444e-01   p_joint 2.560976e-04

Joint ci ratio: 1.708983e-01	ci left: 2.335200e-04	ci right 2.776137e-04	k: 525	n:2060000
Cons ci ratio: 3.246539e-03	ci left: 4.137519e-01	ci right 4.150978e-01	k: 853715	n:2060000
KS ci ratio: 1.708983e-01	ci left: 2.335200e-04	ci right 2.776137e-04	k: 525	n:2060000
THSD7B   2060000 perm   1910 sec   (1078 perm/sec)   p_kst 2.548544e-04   p_cons 4.144248e-01   p_joint 2.548544e-04

Joint ci ratio: 1.705743e-01	ci left: 2.333167e-04	ci right 2.772800e-04	k: 527	n:2070000
Cons ci ratio: 3.238769e-03	ci left: 4.137414e-01	ci right 4.150840e-01	k: 857834	n:2070000
KS ci ratio: 1.705743e-01	ci left: 2.333167e-04	ci right 2.772800e-04	k: 527	n:2070000
THSD7B   2070000 perm   1927 sec   (1074 perm/sec)   p_kst 2.545894e-04   p_cons 4.144126e-01   p_joint 2.545894e-04

Joint ci ratio: 1.704131e-01	ci left: 2.326553e-04	ci right 2.764482e-04	k: 528	n:2080000
Cons ci ratio: 3.231237e-03	ci left: 4.137035e-01	ci right 4.150429e-01	k: 861896	n:2080000
KS ci ratio: 1.704131e-01	ci left: 2.326553e-04	ci right 2.764482e-04	k: 528	n:2080000
THSD7B   2080000 perm   1943 sec   (1070 perm/sec)   p_kst 2.538462e-04   p_cons 4.143731e-01   p_joint 2.538462e-04

Joint ci ratio: 1.699319e-01	ci left: 2.329164e-04	ci right 2.766219e-04	k: 531	n:2090000
Cons ci ratio: 3.223611e-03	ci left: 4.136880e-01	ci right 4.150242e-01	k: 866004	n:2090000
KS ci ratio: 1.699319e-01	ci left: 2.329164e-04	ci right 2.766219e-04	k: 531	n:2090000
THSD7B   2090000 perm   1960 sec   (1066 perm/sec)   p_kst 2.540670e-04   p_cons 4.143560e-01   p_joint 2.540670e-04

Joint ci ratio: 1.694547e-01	ci left: 2.331751e-04	ci right 2.767939e-04	k: 534	n:2100000
Cons ci ratio: 3.215922e-03	ci left: 4.136903e-01	ci right 4.150233e-01	k: 870149	n:2100000
KS ci ratio: 1.694547e-01	ci left: 2.331751e-04	ci right 2.767939e-04	k: 534	n:2100000
THSD7B   2100000 perm   1977 sec   (1062 perm/sec)   p_kst 2.542857e-04   p_cons 4.143567e-01   p_joint 2.542857e-04

Joint ci ratio: 1.688247e-01	ci left: 2.338855e-04	ci right 2.774580e-04	k: 538	n:2110000
Cons ci ratio: 3.208241e-03	ci left: 4.136997e-01	ci right 4.150295e-01	k: 874309	n:2110000
KS ci ratio: 1.688247e-01	ci left: 2.338855e-04	ci right 2.774580e-04	k: 538	n:2110000
THSD7B   2110000 perm   1994 sec   (1058 perm/sec)   p_kst 2.549763e-04   p_cons 4.143645e-01   p_joint 2.549763e-04

Joint ci ratio: 1.677389e-01	ci left: 2.359452e-04	ci right 2.795900e-04	k: 545	n:2120000
Cons ci ratio: 3.200617e-03	ci left: 4.137085e-01	ci right 4.150352e-01	k: 878468	n:2120000
KS ci ratio: 1.677389e-01	ci left: 2.359452e-04	ci right 2.795900e-04	k: 545	n:2120000
THSD7B   2120000 perm   2010 sec   (1055 perm/sec)   p_kst 2.570755e-04   p_cons 4.143717e-01   p_joint 2.570755e-04

Joint ci ratio: 1.665231e-01	ci left: 2.384362e-04	ci right 2.821901e-04	k: 553	n:2130000
Cons ci ratio: 3.193104e-03	ci left: 4.137088e-01	ci right 4.150323e-01	k: 882609	n:2130000
KS ci ratio: 1.665231e-01	ci left: 2.384362e-04	ci right 2.821901e-04	k: 553	n:2130000
THSD7B   2130000 perm   2027 sec   (1051 perm/sec)   p_kst 2.596244e-04   p_cons 4.143704e-01   p_joint 2.596244e-04

Joint ci ratio: 1.659252e-01	ci left: 2.391135e-04	ci right 2.828183e-04	k: 557	n:2140000
Cons ci ratio: 3.185554e-03	ci left: 4.137226e-01	ci right 4.150431e-01	k: 886779	n:2140000
KS ci ratio: 1.659252e-01	ci left: 2.391135e-04	ci right 2.828183e-04	k: 557	n:2140000
THSD7B   2140000 perm   2045 sec   (1047 perm/sec)   p_kst 2.602804e-04   p_cons 4.143827e-01   p_joint 2.602804e-04

Joint ci ratio: 1.656286e-01	ci left: 2.388929e-04	ci right 2.824717e-04	k: 559	n:2150000
Cons ci ratio: 3.177975e-03	ci left: 4.137488e-01	ci right 4.150663e-01	k: 890976	n:2150000
KS ci ratio: 1.656286e-01	ci left: 2.388929e-04	ci right 2.824717e-04	k: 559	n:2150000
THSD7B   2150000 perm   2062 sec   (1043 perm/sec)   p_kst 2.600000e-04   p_cons 4.144074e-01   p_joint 2.600000e-04

Joint ci ratio: 1.651867e-01	ci left: 2.391184e-04	ci right 2.826103e-04	k: 562	n:2160000
Cons ci ratio: 3.170516e-03	ci left: 4.137647e-01	ci right 4.150791e-01	k: 895151	n:2160000
KS ci ratio: 1.651867e-01	ci left: 2.391184e-04	ci right 2.826103e-04	k: 562	n:2160000
THSD7B   2160000 perm   2080 sec   (1039 perm/sec)   p_kst 2.601852e-04   p_cons 4.144218e-01   p_joint 2.601852e-04

Joint ci ratio: 1.648941e-01	ci left: 2.389000e-04	ci right 2.822676e-04	k: 564	n:2170000
Cons ci ratio: 3.163311e-03	ci left: 4.137495e-01	ci right 4.150608e-01	k: 899259	n:2170000
KS ci ratio: 1.648941e-01	ci left: 2.389000e-04	ci right 2.822676e-04	k: 564	n:2170000
THSD7B   2170000 perm   2097 sec   (1035 perm/sec)   p_kst 2.599078e-04   p_cons 4.144051e-01   p_joint 2.599078e-04

Joint ci ratio: 1.646031e-01	ci left: 2.386837e-04	ci right 2.819281e-04	k: 566	n:2180000
Cons ci ratio: 3.155851e-03	ci left: 4.137813e-01	ci right 4.150896e-01	k: 903469	n:2180000
KS ci ratio: 1.646031e-01	ci left: 2.386837e-04	ci right 2.819281e-04	k: 566	n:2180000
THSD7B   2180000 perm   2115 sec   (1031 perm/sec)   p_kst 2.596330e-04   p_cons 4.144353e-01   p_joint 2.596330e-04

Joint ci ratio: 1.637389e-01	ci left: 2.402210e-04	ci right 2.834929e-04	k: 572	n:2190000
Cons ci ratio: 3.148645e-03	ci left: 4.137817e-01	ci right 4.150870e-01	k: 907611	n:2190000
KS ci ratio: 1.637389e-01	ci left: 2.402210e-04	ci right 2.834929e-04	k: 572	n:2190000
THSD7B   2190000 perm   2132 sec   (1027 perm/sec)   p_kst 2.611872e-04   p_cons 4.144342e-01   p_joint 2.611872e-04

Joint ci ratio: 1.631703e-01	ci left: 2.408730e-04	ci right 2.840968e-04	k: 576	n:2200000
Cons ci ratio: 3.141443e-03	ci left: 4.137889e-01	ci right 4.150913e-01	k: 911768	n:2200000
KS ci ratio: 1.631703e-01	ci left: 2.408730e-04	ci right 2.840968e-04	k: 576	n:2200000
THSD7B   2200000 perm   2150 sec   (1023 perm/sec)   p_kst 2.618182e-04   p_cons 4.144400e-01   p_joint 2.618182e-04

Joint ci ratio: 1.630291e-01	ci left: 2.402170e-04	ci right 2.832822e-04	k: 577	n:2210000
Cons ci ratio: 3.134352e-03	ci left: 4.137866e-01	ci right 4.150860e-01	k: 915904	n:2210000
KS ci ratio: 1.630291e-01	ci left: 2.402170e-04	ci right 2.832822e-04	k: 577	n:2210000
THSD7B   2210000 perm   2168 sec   (1019 perm/sec)   p_kst 2.610860e-04   p_cons 4.144362e-01   p_joint 2.610860e-04

Joint ci ratio: 1.627478e-01	ci left: 2.399992e-04	ci right 2.829438e-04	k: 579	n:2220000
Cons ci ratio: 3.127350e-03	ci left: 4.137780e-01	ci right 4.150745e-01	k: 920026	n:2220000
KS ci ratio: 1.627478e-01	ci left: 2.399992e-04	ci right 2.829438e-04	k: 579	n:2220000
THSD7B   2220000 perm   2186 sec   (1016 perm/sec)   p_kst 2.608108e-04   p_cons 4.144261e-01   p_joint 2.608108e-04

Joint ci ratio: 1.624680e-01	ci left: 2.397833e-04	ci right 2.826083e-04	k: 581	n:2230000
Cons ci ratio: 3.120337e-03	ci left: 4.137784e-01	ci right 4.150720e-01	k: 924168	n:2230000
KS ci ratio: 1.624680e-01	ci left: 2.397833e-04	ci right 2.826083e-04	k: 581	n:2230000
THSD7B   2230000 perm   2203 sec   (1012 perm/sec)   p_kst 2.605381e-04   p_cons 4.144251e-01   p_joint 2.605381e-04

Joint ci ratio: 1.619125e-01	ci left: 2.404261e-04	ci right 2.832048e-04	k: 585	n:2240000
Cons ci ratio: 3.113216e-03	ci left: 4.138030e-01	ci right 4.150937e-01	k: 928364	n:2240000
KS ci ratio: 1.619125e-01	ci left: 2.404261e-04	ci right 2.832048e-04	k: 585	n:2240000
THSD7B   2240000 perm   2221 sec   (1008 perm/sec)   p_kst 2.611607e-04   p_cons 4.144482e-01   p_joint 2.611607e-04

Joint ci ratio: 1.617746e-01	ci left: 2.397840e-04	ci right 2.824085e-04	k: 586	n:2250000
Cons ci ratio: 3.106328e-03	ci left: 4.137984e-01	ci right 4.150862e-01	k: 932495	n:2250000
KS ci ratio: 1.617746e-01	ci left: 2.397840e-04	ci right 2.824085e-04	k: 586	n:2250000
THSD7B   2250000 perm   2239 sec   (1005 perm/sec)   p_kst 2.604444e-04   p_cons 4.144422e-01   p_joint 2.604444e-04

Joint ci ratio: 1.616370e-01	ci left: 2.391475e-04	ci right 2.816193e-04	k: 587	n:2260000
Cons ci ratio: 3.099444e-03	ci left: 4.138005e-01	ci right 4.150855e-01	k: 936641	n:2260000
KS ci ratio: 1.616370e-01	ci left: 2.391475e-04	ci right 2.816193e-04	k: 587	n:2260000
THSD7B   2260000 perm   2257 sec   (1001 perm/sec)   p_kst 2.597345e-04   p_cons 4.144429e-01   p_joint 2.597345e-04

Joint ci ratio: 1.613628e-01	ci left: 2.389395e-04	ci right 2.812953e-04	k: 589	n:2270000
Cons ci ratio: 3.092613e-03	ci left: 4.138013e-01	ci right 4.150835e-01	k: 940784	n:2270000
KS ci ratio: 1.613628e-01	ci left: 2.389395e-04	ci right 2.812953e-04	k: 589	n:2270000
THSD7B   2270000 perm   2276 sec   (998 perm/sec)   p_kst 2.594714e-04   p_cons 4.144423e-01   p_joint 2.594714e-04

Joint ci ratio: 1.612263e-01	ci left: 2.383124e-04	ci right 2.805179e-04	k: 590	n:2280000
Cons ci ratio: 3.085789e-03	ci left: 4.138083e-01	ci right 4.150876e-01	k: 944941	n:2280000
KS ci ratio: 1.612263e-01	ci left: 2.383124e-04	ci right 2.805179e-04	k: 590	n:2280000
THSD7B   2280000 perm   2294 sec   (994 perm/sec)   p_kst 2.587719e-04   p_cons 4.144478e-01   p_joint 2.587719e-04

Joint ci ratio: 1.606834e-01	ci left: 2.389481e-04	ci right 2.811099e-04	k: 594	n:2290000
Cons ci ratio: 3.079145e-03	ci left: 4.137937e-01	ci right 4.150702e-01	k: 949049	n:2290000
KS ci ratio: 1.606834e-01	ci left: 2.389481e-04	ci right 2.811099e-04	k: 594	n:2290000
THSD7B   2290000 perm   2312 sec   (990 perm/sec)   p_kst 2.593886e-04   p_cons 4.144319e-01   p_joint 2.593886e-04

Joint ci ratio: 1.604141e-01	ci left: 2.387438e-04	ci right 2.807922e-04	k: 596	n:2300000
Cons ci ratio: 3.072530e-03	ci left: 4.137815e-01	ci right 4.150552e-01	k: 953162	n:2300000
KS ci ratio: 1.604141e-01	ci left: 2.387438e-04	ci right 2.807922e-04	k: 596	n:2300000
THSD7B   2300000 perm   2330 sec   (987 perm/sec)   p_kst 2.591304e-04   p_cons 4.144183e-01   p_joint 2.591304e-04

Joint ci ratio: 1.604142e-01	ci left: 2.377103e-04	ci right 2.795766e-04	k: 596	n:2310000
Cons ci ratio: 3.065807e-03	ci left: 4.137932e-01	ci right 4.150642e-01	k: 957330	n:2310000
KS ci ratio: 1.604142e-01	ci left: 2.377103e-04	ci right 2.795766e-04	k: 596	n:2310000
THSD7B   2310000 perm   2348 sec   (984 perm/sec)   p_kst 2.580087e-04   p_cons 4.144286e-01   p_joint 2.580087e-04

Joint ci ratio: 1.601461e-01	ci left: 2.375131e-04	ci right 2.792682e-04	k: 598	n:2320000
Cons ci ratio: 3.059036e-03	ci left: 4.138194e-01	ci right 4.150877e-01	k: 961532	n:2320000
KS ci ratio: 1.601461e-01	ci left: 2.375131e-04	ci right 2.792682e-04	k: 598	n:2320000
THSD7B   2320000 perm   2366 sec   (980 perm/sec)   p_kst 2.577586e-04   p_cons 4.144534e-01   p_joint 2.577586e-04

Joint ci ratio: 1.597466e-01	ci left: 2.377298e-04	ci right 2.794086e-04	k: 601	n:2330000
Cons ci ratio: 3.052647e-03	ci left: 4.137918e-01	ci right 4.150573e-01	k: 965609	n:2330000
KS ci ratio: 1.597466e-01	ci left: 2.377298e-04	ci right 2.794086e-04	k: 601	n:2330000
THSD7B   2330000 perm   2385 sec   (977 perm/sec)   p_kst 2.579399e-04   p_cons 4.144245e-01   p_joint 2.579399e-04

Joint ci ratio: 1.592185e-01	ci left: 2.383550e-04	ci right 2.799921e-04	k: 605	n:2340000
Cons ci ratio: 3.045957e-03	ci left: 4.138187e-01	ci right 4.150815e-01	k: 969813	n:2340000
KS ci ratio: 1.592185e-01	ci left: 2.383550e-04	ci right 2.799921e-04	k: 605	n:2340000
THSD7B   2340000 perm   2404 sec   (974 perm/sec)   p_kst 2.585470e-04   p_cons 4.144500e-01   p_joint 2.585470e-04

Joint ci ratio: 1.590873e-01	ci left: 2.377493e-04	ci right 2.792432e-04	k: 606	n:2350000
Cons ci ratio: 3.039561e-03	ci left: 4.138054e-01	ci right 4.150655e-01	k: 973923	n:2350000
KS ci ratio: 1.590873e-01	ci left: 2.377493e-04	ci right 2.792432e-04	k: 606	n:2350000
THSD7B   2350000 perm   2422 sec   (970 perm/sec)   p_kst 2.578723e-04   p_cons 4.144353e-01   p_joint 2.578723e-04

Joint ci ratio: 1.585657e-01	ci left: 2.383695e-04	ci right 2.798221e-04	k: 610	n:2360000
Cons ci ratio: 3.033189e-03	ci left: 4.137947e-01	ci right 4.150521e-01	k: 978039	n:2360000
KS ci ratio: 1.585657e-01	ci left: 2.383695e-04	ci right 2.798221e-04	k: 610	n:2360000
THSD7B   2360000 perm   2441 sec   (967 perm/sec)   p_kst 2.584746e-04   p_cons 4.144233e-01   p_joint 2.584746e-04

Joint ci ratio: 1.581778e-01	ci left: 2.385794e-04	ci right 2.799574e-04	k: 613	n:2370000
Cons ci ratio: 3.026758e-03	ci left: 4.138001e-01	ci right 4.150549e-01	k: 982193	n:2370000
KS ci ratio: 1.581778e-01	ci left: 2.385794e-04	ci right 2.799574e-04	k: 613	n:2370000
THSD7B   2370000 perm   2460 sec   (963 perm/sec)   p_kst 2.586498e-04   p_cons 4.144274e-01   p_joint 2.586498e-04

Joint ci ratio: 1.575376e-01	ci left: 2.395948e-04	ci right 2.809649e-04	k: 618	n:2380000
Cons ci ratio: 3.020534e-03	ci left: 4.137787e-01	ci right 4.150308e-01	k: 986283	n:2380000
KS ci ratio: 1.575376e-01	ci left: 2.395948e-04	ci right 2.809649e-04	k: 618	n:2380000
THSD7B   2380000 perm   2479 sec   (960 perm/sec)   p_kst 2.596639e-04   p_cons 4.144046e-01   p_joint 2.596639e-04

Joint ci ratio: 1.574105e-01	ci left: 2.389942e-04	ci right 2.802242e-04	k: 619	n:2390000
Cons ci ratio: 3.014146e-03	ci left: 4.137900e-01	ci right 4.150395e-01	k: 990451	n:2390000
KS ci ratio: 1.574105e-01	ci left: 2.389942e-04	ci right 2.802242e-04	k: 619	n:2390000
THSD7B   2390000 perm   2498 sec   (957 perm/sec)   p_kst 2.589958e-04   p_cons 4.144146e-01   p_joint 2.589958e-04

Joint ci ratio: 1.571573e-01	ci left: 2.387990e-04	ci right 2.799227e-04	k: 621	n:2400000
Cons ci ratio: 3.007899e-03	ci left: 4.137850e-01	ci right 4.150319e-01	k: 994580	n:2400000
KS ci ratio: 1.571573e-01	ci left: 2.387990e-04	ci right 2.799227e-04	k: 621	n:2400000
THSD7B   2400000 perm   2517 sec   (953 perm/sec)   p_kst 2.587500e-04   p_cons 4.144083e-01   p_joint 2.587500e-04

Joint ci ratio: 1.569052e-01	ci left: 2.386054e-04	ci right 2.796236e-04	k: 623	n:2410000
Cons ci ratio: 3.001555e-03	ci left: 4.138020e-01	ci right 4.150463e-01	k: 998762	n:2410000
KS ci ratio: 1.569052e-01	ci left: 2.386054e-04	ci right 2.796236e-04	k: 623	n:2410000
THSD7B   2410000 perm   2536 sec   (950 perm/sec)   p_kst 2.585062e-04   p_cons 4.144241e-01   p_joint 2.585062e-04

Joint ci ratio: 1.560324e-01	ci left: 2.403987e-04	ci right 2.814739e-04	k: 630	n:2420000
Cons ci ratio: 2.995187e-03	ci left: 4.138292e-01	ci right 4.150710e-01	k: 1002969	n:2420000
KS ci ratio: 1.560324e-01	ci left: 2.403987e-04	ci right 2.814739e-04	k: 630	n:2420000
THSD7B   2420000 perm   2555 sec   (947 perm/sec)   p_kst 2.603306e-04   p_cons 4.144500e-01   p_joint 2.603306e-04

Joint ci ratio: 1.559089e-01	ci left: 2.398049e-04	ci right 2.807431e-04	k: 631	n:2430000
Cons ci ratio: 2.989019e-03	ci left: 4.138303e-01	ci right 4.150695e-01	k: 1007113	n:2430000
KS ci ratio: 1.559089e-01	ci left: 2.398049e-04	ci right 2.807431e-04	k: 631	n:2430000
THSD7B   2430000 perm   2575 sec   (944 perm/sec)   p_kst 2.596708e-04   p_cons 4.144498e-01   p_joint 2.596708e-04

Joint ci ratio: 1.554178e-01	ci left: 2.403976e-04	ci right 2.812957e-04	k: 635	n:2440000
Cons ci ratio: 2.982972e-03	ci left: 4.138178e-01	ci right 4.150545e-01	k: 1011224	n:2440000
KS ci ratio: 1.554178e-01	ci left: 2.403976e-04	ci right 2.812957e-04	k: 635	n:2440000
THSD7B   2440000 perm   2594 sec   (941 perm/sec)   p_kst 2.602459e-04   p_cons 4.144361e-01   p_joint 2.602459e-04

Joint ci ratio: 1.550525e-01	ci left: 2.405933e-04	ci right 2.814195e-04	k: 638	n:2450000
Cons ci ratio: 2.976917e-03	ci left: 4.138128e-01	ci right 4.150470e-01	k: 1015353	n:2450000
KS ci ratio: 1.550525e-01	ci left: 2.405933e-04	ci right 2.814195e-04	k: 638	n:2450000
THSD7B   2450000 perm   2613 sec   (938 perm/sec)   p_kst 2.604082e-04   p_cons 4.144298e-01   p_joint 2.604082e-04

Joint ci ratio: 1.546898e-01	ci left: 2.407875e-04	ci right 2.815423e-04	k: 641	n:2460000
Cons ci ratio: 2.970856e-03	ci left: 4.138148e-01	ci right 4.150464e-01	k: 1019499	n:2460000
KS ci ratio: 1.546898e-01	ci left: 2.407875e-04	ci right 2.815423e-04	k: 641	n:2460000
THSD7B   2460000 perm   2633 sec   (934 perm/sec)   p_kst 2.605691e-04   p_cons 4.144305e-01   p_joint 2.605691e-04

Joint ci ratio: 1.539719e-01	ci left: 2.421480e-04	ci right 2.829253e-04	k: 647	n:2470000
Cons ci ratio: 2.964832e-03	ci left: 4.138167e-01	ci right 4.150458e-01	k: 1023645	n:2470000
KS ci ratio: 1.539719e-01	ci left: 2.421480e-04	ci right 2.829253e-04	k: 647	n:2470000
THSD7B   2470000 perm   2652 sec   (931 perm/sec)   p_kst 2.619433e-04   p_cons 4.144312e-01   p_joint 2.619433e-04

Joint ci ratio: 1.538533e-01	ci left: 2.415593e-04	ci right 2.822032e-04	k: 648	n:2480000
Cons ci ratio: 2.958738e-03	ci left: 4.138360e-01	ci right 4.150626e-01	k: 1027834	n:2480000
KS ci ratio: 1.538533e-01	ci left: 2.415593e-04	ci right 2.822032e-04	k: 648	n:2480000
THSD7B   2480000 perm   2672 sec   (928 perm/sec)   p_kst 2.612903e-04   p_cons 4.144492e-01   p_joint 2.612903e-04

Joint ci ratio: 1.537349e-01	ci left: 2.409753e-04	ci right 2.814869e-04	k: 649	n:2490000
Cons ci ratio: 2.952770e-03	ci left: 4.138406e-01	ci right 4.150648e-01	k: 1031987	n:2490000
KS ci ratio: 1.537349e-01	ci left: 2.409753e-04	ci right 2.814869e-04	k: 649	n:2490000
THSD7B   2490000 perm   2691 sec   (925 perm/sec)   p_kst 2.606426e-04   p_cons 4.144526e-01   p_joint 2.606426e-04

Joint ci ratio: 1.534990e-01	ci left: 2.407807e-04	ci right 2.811917e-04	k: 651	n:2500000
Cons ci ratio: 2.946855e-03	ci left: 4.138424e-01	ci right 4.150642e-01	k: 1036133	n:2500000
KS ci ratio: 1.534990e-01	ci left: 2.407807e-04	ci right 2.811917e-04	k: 651	n:2500000
THSD7B   2500000 perm   2711 sec   (922 perm/sec)   p_kst 2.604000e-04   p_cons 4.144532e-01   p_joint 2.604000e-04

Joint ci ratio: 1.531471e-01	ci left: 2.409708e-04	ci right 2.813125e-04	k: 654	n:2510000
Cons ci ratio: 2.940990e-03	ci left: 4.138419e-01	ci right 4.150611e-01	k: 1040273	n:2510000
KS ci ratio: 1.531471e-01	ci left: 2.409708e-04	ci right 2.813125e-04	k: 654	n:2510000
THSD7B   2510000 perm   2731 sec   (919 perm/sec)   p_kst 2.605578e-04   p_cons 4.144514e-01   p_joint 2.605578e-04

Joint ci ratio: 1.527975e-01	ci left: 2.411594e-04	ci right 2.814322e-04	k: 657	n:2520000
Cons ci ratio: 2.935256e-03	ci left: 4.138254e-01	ci right 4.150423e-01	k: 1044373	n:2520000
KS ci ratio: 1.527975e-01	ci left: 2.411594e-04	ci right 2.814322e-04	k: 657	n:2520000
THSD7B   2520000 perm   2751 sec   (916 perm/sec)   p_kst 2.607143e-04   p_cons 4.144337e-01   p_joint 2.607143e-04

Joint ci ratio: 1.523352e-01	ci left: 2.417269e-04	ci right 2.819611e-04	k: 661	n:2530000
Cons ci ratio: 2.929557e-03	ci left: 4.138087e-01	ci right 4.150231e-01	k: 1048472	n:2530000
KS ci ratio: 1.523352e-01	ci left: 2.417269e-04	ci right 2.819611e-04	k: 661	n:2530000
THSD7B   2530000 perm   2770 sec   (913 perm/sec)   p_kst 2.612648e-04   p_cons 4.144158e-01   p_joint 2.612648e-04

Joint ci ratio: 1.521056e-01	ci left: 2.415326e-04	ci right 2.816684e-04	k: 663	n:2540000
Cons ci ratio: 2.923709e-03	ci left: 4.138224e-01	ci right 4.150345e-01	k: 1052648	n:2540000
KS ci ratio: 1.521056e-01	ci left: 2.415326e-04	ci right 2.816684e-04	k: 663	n:2540000
THSD7B   2540000 perm   2790 sec   (910 perm/sec)   p_kst 2.610236e-04   p_cons 4.144283e-01   p_joint 2.610236e-04

Joint ci ratio: 1.516495e-01	ci left: 2.420945e-04	ci right 2.821920e-04	k: 667	n:2550000
Cons ci ratio: 2.918054e-03	ci left: 4.138098e-01	ci right 4.150194e-01	k: 1056757	n:2550000
KS ci ratio: 1.516495e-01	ci left: 2.420945e-04	ci right 2.821920e-04	k: 667	n:2550000
THSD7B   2550000 perm   2811 sec   (907 perm/sec)   p_kst 2.615686e-04   p_cons 4.144145e-01   p_joint 2.615686e-04

Joint ci ratio: 1.514230e-01	ci left: 2.419004e-04	ci right 2.819005e-04	k: 669	n:2560000
Cons ci ratio: 2.912223e-03	ci left: 4.138320e-01	ci right 4.150393e-01	k: 1060955	n:2560000
KS ci ratio: 1.514230e-01	ci left: 2.419004e-04	ci right 2.819005e-04	k: 669	n:2560000
THSD7B   2560000 perm   2831 sec   (904 perm/sec)   p_kst 2.613281e-04   p_cons 4.144355e-01   p_joint 2.613281e-04

Joint ci ratio: 1.510851e-01	ci left: 2.420823e-04	ci right 2.820151e-04	k: 672	n:2570000
Cons ci ratio: 2.906618e-03	ci left: 4.138221e-01	ci right 4.150271e-01	k: 1065071	n:2570000
KS ci ratio: 1.510851e-01	ci left: 2.420823e-04	ci right 2.820151e-04	k: 672	n:2570000
THSD7B   2570000 perm   2851 sec   (902 perm/sec)   p_kst 2.614786e-04   p_cons 4.144245e-01   p_joint 2.614786e-04

Joint ci ratio: 1.507494e-01	ci left: 2.422629e-04	ci right 2.821287e-04	k: 675	n:2580000
Cons ci ratio: 2.901054e-03	ci left: 4.138108e-01	ci right 4.150134e-01	k: 1069183	n:2580000
KS ci ratio: 1.507494e-01	ci left: 2.422629e-04	ci right 2.821287e-04	k: 675	n:2580000
THSD7B   2580000 perm   2871 sec   (899 perm/sec)   p_kst 2.616279e-04   p_cons 4.144120e-01   p_joint 2.616279e-04

Joint ci ratio: 1.501949e-01	ci left: 2.431853e-04	ci right 2.830425e-04	k: 680	n:2590000
Cons ci ratio: 2.895363e-03	ci left: 4.138262e-01	ci right 4.150265e-01	k: 1073364	n:2590000
KS ci ratio: 1.501949e-01	ci left: 2.431853e-04	ci right 2.830425e-04	k: 680	n:2590000
THSD7B   2590000 perm   2891 sec   (896 perm/sec)   p_kst 2.625483e-04   p_cons 4.144263e-01   p_joint 2.625483e-04

Joint ci ratio: 1.498652e-01	ci left: 2.433605e-04	ci right 2.831510e-04	k: 683	n:2600000
Cons ci ratio: 2.889832e-03	ci left: 4.138203e-01	ci right 4.150183e-01	k: 1077490	n:2600000
KS ci ratio: 1.498652e-01	ci left: 2.433605e-04	ci right 2.831510e-04	k: 683	n:2600000
THSD7B   2600000 perm   2912 sec   (893 perm/sec)   p_kst 2.626923e-04   p_cons 4.144192e-01   p_joint 2.626923e-04

Joint ci ratio: 1.492121e-01	ci left: 2.446410e-04	ci right 2.844509e-04	k: 689	n:2610000
Cons ci ratio: 2.884757e-03	ci left: 4.137429e-01	ci right 4.149385e-01	k: 1081429	n:2610000
KS ci ratio: 1.492121e-01	ci left: 2.446410e-04	ci right 2.844509e-04	k: 689	n:2610000
THSD7B   2610000 perm   2932 sec   (890 perm/sec)   p_kst 2.639847e-04   p_cons 4.143406e-01   p_joint 2.639847e-04

Joint ci ratio: 1.488888e-01	ci left: 2.448096e-04	ci right 2.845530e-04	k: 692	n:2620000
Cons ci ratio: 2.879250e-03	ci left: 4.137435e-01	ci right 4.149368e-01	k: 1085571	n:2620000
KS ci ratio: 1.488888e-01	ci left: 2.448096e-04	ci right 2.845530e-04	k: 692	n:2620000
THSD7B   2620000 perm   2953 sec   (887 perm/sec)   p_kst 2.641221e-04   p_cons 4.143401e-01   p_joint 2.641221e-04

Joint ci ratio: 1.483545e-01	ci left: 2.457092e-04	ci right 2.854428e-04	k: 697	n:2630000
Cons ci ratio: 2.873810e-03	ci left: 4.137380e-01	ci right 4.149291e-01	k: 1089697	n:2630000
KS ci ratio: 1.483545e-01	ci left: 2.457092e-04	ci right 2.854428e-04	k: 697	n:2630000
THSD7B   2630000 perm   2974 sec   (884 perm/sec)   p_kst 2.650190e-04   p_cons 4.143335e-01   p_joint 2.650190e-04

Joint ci ratio: 1.481424e-01	ci left: 2.455079e-04	ci right 2.851472e-04	k: 699	n:2640000
Cons ci ratio: 2.868320e-03	ci left: 4.137462e-01	ci right 4.149350e-01	k: 1093859	n:2640000
KS ci ratio: 1.481424e-01	ci left: 2.455079e-04	ci right 2.851472e-04	k: 699	n:2640000
THSD7B   2640000 perm   2994 sec   (882 perm/sec)   p_kst 2.647727e-04   p_cons 4.143405e-01   p_joint 2.647727e-04

Joint ci ratio: 1.481425e-01	ci left: 2.445815e-04	ci right 2.840712e-04	k: 699	n:2650000
Cons ci ratio: 2.862862e-03	ci left: 4.137544e-01	ci right 4.149409e-01	k: 1098021	n:2650000
KS ci ratio: 1.481425e-01	ci left: 2.445815e-04	ci right 2.840712e-04	k: 699	n:2650000
THSD7B   2650000 perm   3016 sec   (879 perm/sec)   p_kst 2.637736e-04   p_cons 4.143475e-01   p_joint 2.637736e-04

Joint ci ratio: 1.479313e-01	ci left: 2.443860e-04	ci right 2.837830e-04	k: 701	n:2660000
Cons ci ratio: 2.857486e-03	ci left: 4.137538e-01	ci right 4.149381e-01	k: 1102160	n:2660000
KS ci ratio: 1.479313e-01	ci left: 2.443860e-04	ci right 2.837830e-04	k: 701	n:2660000
THSD7B   2660000 perm   3036 sec   (876 perm/sec)   p_kst 2.635338e-04   p_cons 4.143459e-01   p_joint 2.635338e-04

Joint ci ratio: 1.479314e-01	ci left: 2.434707e-04	ci right 2.827201e-04	k: 701	n:2670000
Cons ci ratio: 2.852034e-03	ci left: 4.137712e-01	ci right 4.149533e-01	k: 1106347	n:2670000
KS ci ratio: 1.479314e-01	ci left: 2.434707e-04	ci right 2.827201e-04	k: 701	n:2670000
THSD7B   2670000 perm   3057 sec   (873 perm/sec)   p_kst 2.625468e-04   p_cons 4.143622e-01   p_joint 2.625468e-04

Joint ci ratio: 1.479315e-01	ci left: 2.425622e-04	ci right 2.816652e-04	k: 701	n:2680000
Cons ci ratio: 2.846875e-03	ci left: 4.137437e-01	ci right 4.149236e-01	k: 1110414	n:2680000
KS ci ratio: 1.479315e-01	ci left: 2.425622e-04	ci right 2.816652e-04	k: 701	n:2680000
THSD7B   2680000 perm   3078 sec   (871 perm/sec)   p_kst 2.615672e-04   p_cons 4.143336e-01   p_joint 2.615672e-04

Joint ci ratio: 1.478263e-01	ci left: 2.420185e-04	ci right 2.810036e-04	k: 702	n:2690000
Cons ci ratio: 2.841625e-03	ci left: 4.137369e-01	ci right 4.149146e-01	k: 1114536	n:2690000
KS ci ratio: 1.478263e-01	ci left: 2.420185e-04	ci right 2.810036e-04	k: 702	n:2690000
THSD7B   2690000 perm   3099 sec   (868 perm/sec)   p_kst 2.609665e-04   p_cons 4.143257e-01   p_joint 2.609665e-04

Joint ci ratio: 1.475118e-01	ci left: 2.421922e-04	ci right 2.811150e-04	k: 705	n:2700000
Cons ci ratio: 2.836413e-03	ci left: 4.137286e-01	ci right 4.149041e-01	k: 1118654	n:2700000
KS ci ratio: 1.475118e-01	ci left: 2.421922e-04	ci right 2.811150e-04	k: 705	n:2700000
THSD7B   2700000 perm   3120 sec   (865 perm/sec)   p_kst 2.611111e-04   p_cons 4.143163e-01   p_joint 2.611111e-04

Joint ci ratio: 1.468889e-01	ci left: 2.434310e-04	ci right 2.823732e-04	k: 711	n:2710000
Cons ci ratio: 2.831117e-03	ci left: 4.137396e-01	ci right 4.149130e-01	k: 1122824	n:2710000
KS ci ratio: 1.468889e-01	ci left: 2.434310e-04	ci right 2.823732e-04	k: 711	n:2710000
THSD7B   2710000 perm   3141 sec   (863 perm/sec)   p_kst 2.623616e-04   p_cons 4.143262e-01   p_joint 2.623616e-04

Joint ci ratio: 1.467859e-01	ci left: 2.428902e-04	ci right 2.817162e-04	k: 712	n:2720000
Cons ci ratio: 2.826024e-03	ci left: 4.137207e-01	ci right 4.148919e-01	k: 1126913	n:2720000
KS ci ratio: 1.467859e-01	ci left: 2.428902e-04	ci right 2.817162e-04	k: 712	n:2720000
THSD7B   2720000 perm   3162 sec   (860 perm/sec)   p_kst 2.617647e-04   p_cons 4.143062e-01   p_joint 2.617647e-04

Joint ci ratio: 1.464780e-01	ci left: 2.430590e-04	ci right 2.818235e-04	k: 715	n:2730000
Cons ci ratio: 2.820940e-03	ci left: 4.137053e-01	ci right 4.148744e-01	k: 1131011	n:2730000
KS ci ratio: 1.464780e-01	ci left: 2.430590e-04	ci right 2.818235e-04	k: 715	n:2730000
THSD7B   2730000 perm   3184 sec   (857 perm/sec)   p_kst 2.619048e-04   p_cons 4.142897e-01   p_joint 2.619048e-04

Joint ci ratio: 1.463759e-01	ci left: 2.425236e-04	ci right 2.811732e-04	k: 716	n:2740000
Cons ci ratio: 2.815918e-03	ci left: 4.136838e-01	ci right 4.148507e-01	k: 1135092	n:2740000
KS ci ratio: 1.463759e-01	ci left: 2.425236e-04	ci right 2.811732e-04	k: 716	n:2740000
THSD7B   2740000 perm   3205 sec   (855 perm/sec)   p_kst 2.613139e-04   p_cons 4.142672e-01   p_joint 2.613139e-04

Joint ci ratio: 1.459693e-01	ci left: 2.430430e-04	ci right 2.816585e-04	k: 720	n:2750000
Cons ci ratio: 2.810774e-03	ci left: 4.136883e-01	ci right 4.148530e-01	k: 1139244	n:2750000
KS ci ratio: 1.459693e-01	ci left: 2.430430e-04	ci right 2.816585e-04	k: 720	n:2750000
THSD7B   2750000 perm   3227 sec   (852 perm/sec)   p_kst 2.618182e-04   p_cons 4.142705e-01   p_joint 2.618182e-04

Joint ci ratio: 1.457672e-01	ci left: 2.428606e-04	ci right 2.813891e-04	k: 722	n:2760000
Cons ci ratio: 2.805501e-03	ci left: 4.137198e-01	ci right 4.148825e-01	k: 1143471	n:2760000
KS ci ratio: 1.457672e-01	ci left: 2.428606e-04	ci right 2.813891e-04	k: 722	n:2760000
THSD7B   2760000 perm   3249 sec   (850 perm/sec)   p_kst 2.615942e-04   p_cons 4.143011e-01   p_joint 2.615942e-04

Joint ci ratio: 1.453656e-01	ci left: 2.433753e-04	ci right 2.818698e-04	k: 726	n:2770000
Cons ci ratio: 2.800416e-03	ci left: 4.137238e-01	ci right 4.148843e-01	k: 1147622	n:2770000
KS ci ratio: 1.453656e-01	ci left: 2.433753e-04	ci right 2.818698e-04	k: 726	n:2770000
THSD7B   2770000 perm   3270 sec   (847 perm/sec)   p_kst 2.620939e-04   p_cons 4.143040e-01   p_joint 2.620939e-04

Joint ci ratio: 1.451661e-01	ci left: 2.431931e-04	ci right 2.816014e-04	k: 728	n:2780000
Cons ci ratio: 2.795292e-03	ci left: 4.137392e-01	ci right 4.148977e-01	k: 1151805	n:2780000
KS ci ratio: 1.451661e-01	ci left: 2.431931e-04	ci right 2.816014e-04	k: 728	n:2780000
THSD7B   2780000 perm   3292 sec   (844 perm/sec)   p_kst 2.618705e-04   p_cons 4.143183e-01   p_joint 2.618705e-04

Joint ci ratio: 1.445723e-01	ci left: 2.443941e-04	ci right 2.828205e-04	k: 734	n:2790000
Cons ci ratio: 2.790266e-03	ci left: 4.137423e-01	ci right 4.148987e-01	k: 1155954	n:2790000
KS ci ratio: 1.445723e-01	ci left: 2.443941e-04	ci right 2.828205e-04	k: 734	n:2790000
THSD7B   2790000 perm   3314 sec   (842 perm/sec)   p_kst 2.630824e-04   p_cons 4.143204e-01   p_joint 2.630824e-04

Joint ci ratio: 1.442782e-01	ci left: 2.445540e-04	ci right 2.829206e-04	k: 737	n:2800000
Cons ci ratio: 2.785117e-03	ci left: 4.137715e-01	ci right 4.149258e-01	k: 1160176	n:2800000
KS ci ratio: 1.442782e-01	ci left: 2.445540e-04	ci right 2.829206e-04	k: 737	n:2800000
THSD7B   2800000 perm   3336 sec   (839 perm/sec)   p_kst 2.632143e-04   p_cons 4.143486e-01   p_joint 2.632143e-04

Joint ci ratio: 1.438887e-01	ci left: 2.450558e-04	ci right 2.833885e-04	k: 741	n:2810000
Cons ci ratio: 2.780046e-03	ci left: 4.137919e-01	ci right 4.149442e-01	k: 1164374	n:2810000
KS ci ratio: 1.438887e-01	ci left: 2.450558e-04	ci right 2.833885e-04	k: 741	n:2810000
THSD7B   2810000 perm   3357 sec   (837 perm/sec)   p_kst 2.637011e-04   p_cons 4.143680e-01   p_joint 2.637011e-04

Joint ci ratio: 1.437919e-01	ci left: 2.445287e-04	ci right 2.827509e-04	k: 742	n:2820000
Cons ci ratio: 2.774986e-03	ci left: 4.138150e-01	ci right 4.149653e-01	k: 1168580	n:2820000
KS ci ratio: 1.437919e-01	ci left: 2.445287e-04	ci right 2.827509e-04	k: 742	n:2820000
THSD7B   2820000 perm   3380 sec   (834 perm/sec)   p_kst 2.631206e-04   p_cons 4.143901e-01   p_joint 2.631206e-04

Joint ci ratio: 1.435025e-01	ci left: 2.446866e-04	ci right 2.828500e-04	k: 745	n:2830000
Cons ci ratio: 2.770244e-03	ci left: 4.137871e-01	ci right 4.149353e-01	k: 1172642	n:2830000
KS ci ratio: 1.435025e-01	ci left: 2.446866e-04	ci right 2.828500e-04	k: 745	n:2830000
THSD7B   2830000 perm   3402 sec   (832 perm/sec)   p_kst 2.632509e-04   p_cons 4.143611e-01   p_joint 2.632509e-04

Joint ci ratio: 1.432148e-01	ci left: 2.448435e-04	ci right 2.829482e-04	k: 748	n:2840000
Cons ci ratio: 2.765247e-03	ci left: 4.138083e-01	ci right 4.149545e-01	k: 1176843	n:2840000
KS ci ratio: 1.432148e-01	ci left: 2.448435e-04	ci right 2.829482e-04	k: 748	n:2840000
THSD7B   2840000 perm   3424 sec   (829 perm/sec)   p_kst 2.633803e-04   p_cons 4.143813e-01   p_joint 2.633803e-04

Joint ci ratio: 1.427391e-01	ci left: 2.456760e-04	ci right 2.837725e-04	k: 753	n:2850000
Cons ci ratio: 2.760455e-03	ci left: 4.137982e-01	ci right 4.149424e-01	k: 1180955	n:2850000
KS ci ratio: 1.427391e-01	ci left: 2.456760e-04	ci right 2.837725e-04	k: 753	n:2850000
THSD7B   2850000 perm   3447 sec   (827 perm/sec)   p_kst 2.642105e-04   p_cons 4.143702e-01   p_joint 2.642105e-04

Joint ci ratio: 1.425502e-01	ci left: 2.454913e-04	ci right 2.835045e-04	k: 755	n:2860000
Cons ci ratio: 2.755561e-03	ci left: 4.138105e-01	ci right 4.149526e-01	k: 1185131	n:2860000
KS ci ratio: 1.425502e-01	ci left: 2.454913e-04	ci right 2.835045e-04	k: 755	n:2860000
THSD7B   2860000 perm   3469 sec   (824 perm/sec)   p_kst 2.639860e-04   p_cons 4.143815e-01   p_joint 2.639860e-04

Joint ci ratio: 1.422681e-01	ci left: 2.456440e-04	ci right 2.835992e-04	k: 758	n:2870000
Cons ci ratio: 2.750799e-03	ci left: 4.138039e-01	ci right 4.149440e-01	k: 1189253	n:2870000
KS ci ratio: 1.422681e-01	ci left: 2.456440e-04	ci right 2.835992e-04	k: 758	n:2870000
THSD7B   2870000 perm   3491 sec   (822 perm/sec)   p_kst 2.641115e-04   p_cons 4.143739e-01   p_joint 2.641115e-04

Joint ci ratio: 1.420811e-01	ci left: 2.454608e-04	ci right 2.833336e-04	k: 760	n:2880000
Cons ci ratio: 2.746243e-03	ci left: 4.137654e-01	ci right 4.149036e-01	k: 1193283	n:2880000
KS ci ratio: 1.420811e-01	ci left: 2.454608e-04	ci right 2.833336e-04	k: 760	n:2880000
THSD7B   2880000 perm   3513 sec   (820 perm/sec)   p_kst 2.638889e-04   p_cons 4.143344e-01   p_joint 2.638889e-04

Joint ci ratio: 1.416166e-01	ci left: 2.462802e-04	ci right 2.841447e-04	k: 765	n:2890000
Cons ci ratio: 2.741637e-03	ci left: 4.137399e-01	ci right 4.148761e-01	k: 1197350	n:2890000
KS ci ratio: 1.416166e-01	ci left: 2.462802e-04	ci right 2.841447e-04	k: 765	n:2890000
THSD7B   2890000 perm   3536 sec   (817 perm/sec)   p_kst 2.647059e-04   p_cons 4.143080e-01   p_joint 2.647059e-04

Joint ci ratio: 1.412482e-01	ci left: 2.467615e-04	ci right 2.845930e-04	k: 769	n:2900000
Cons ci ratio: 2.736777e-03	ci left: 4.137636e-01	ci right 4.148979e-01	k: 1201559	n:2900000
KS ci ratio: 1.412482e-01	ci left: 2.467615e-04	ci right 2.845930e-04	k: 769	n:2900000
THSD7B   2900000 perm   3558 sec   (815 perm/sec)   p_kst 2.651724e-04   p_cons 4.143307e-01   p_joint 2.651724e-04

Joint ci ratio: 1.408827e-01	ci left: 2.472396e-04	ci right 2.850380e-04	k: 773	n:2910000
Cons ci ratio: 2.732135e-03	ci left: 4.137532e-01	ci right 4.148855e-01	k: 1205669	n:2910000
KS ci ratio: 1.408827e-01	ci left: 2.472396e-04	ci right 2.850380e-04	k: 773	n:2910000
THSD7B   2910000 perm   3581 sec   (813 perm/sec)   p_kst 2.656357e-04   p_cons 4.143192e-01   p_joint 2.656357e-04

Joint ci ratio: 1.405201e-01	ci left: 2.477145e-04	ci right 2.854799e-04	k: 777	n:2920000
Cons ci ratio: 2.727675e-03	ci left: 4.137147e-01	ci right 4.148451e-01	k: 1209697	n:2920000
KS ci ratio: 1.405201e-01	ci left: 2.477145e-04	ci right 2.854799e-04	k: 777	n:2920000
THSD7B   2920000 perm   3604 sec   (810 perm/sec)   p_kst 2.660959e-04   p_cons 4.142798e-01   p_joint 2.660959e-04

Joint ci ratio: 1.403398e-01	ci left: 2.475277e-04	ci right 2.852122e-04	k: 779	n:2930000
Cons ci ratio: 2.722966e-03	ci left: 4.137246e-01	ci right 4.148530e-01	k: 1213866	n:2930000
KS ci ratio: 1.403398e-01	ci left: 2.475277e-04	ci right 2.852122e-04	k: 779	n:2930000
THSD7B   2930000 perm   3627 sec   (808 perm/sec)   p_kst 2.658703e-04   p_cons 4.142887e-01   p_joint 2.658703e-04

Joint ci ratio: 1.400707e-01	ci left: 2.476703e-04	ci right 2.852982e-04	k: 782	n:2940000
Cons ci ratio: 2.718274e-03	ci left: 4.137358e-01	ci right 4.148623e-01	k: 1218039	n:2940000
KS ci ratio: 1.400707e-01	ci left: 2.476703e-04	ci right 2.852982e-04	k: 782	n:2940000
THSD7B   2940000 perm   3650 sec   (805 perm/sec)   p_kst 2.659864e-04   p_cons 4.142990e-01   p_joint 2.659864e-04

Joint ci ratio: 1.398922e-01	ci left: 2.474850e-04	ci right 2.850328e-04	k: 784	n:2950000
Cons ci ratio: 2.713520e-03	ci left: 4.137622e-01	ci right 4.148868e-01	k: 1222257	n:2950000
KS ci ratio: 1.398922e-01	ci left: 2.474850e-04	ci right 2.850328e-04	k: 784	n:2950000
THSD7B   2950000 perm   3673 sec   (803 perm/sec)   p_kst 2.657627e-04   p_cons 4.143244e-01   p_joint 2.657627e-04

Joint ci ratio: 1.397143e-01	ci left: 2.473009e-04	ci right 2.847692e-04	k: 786	n:2960000
Cons ci ratio: 2.708830e-03	ci left: 4.137816e-01	ci right 4.149043e-01	k: 1226455	n:2960000
KS ci ratio: 1.397143e-01	ci left: 2.473009e-04	ci right 2.847692e-04	k: 786	n:2960000
THSD7B   2960000 perm   3696 sec   (801 perm/sec)   p_kst 2.655405e-04   p_cons 4.143429e-01   p_joint 2.655405e-04

Joint ci ratio: 1.395371e-01	ci left: 2.471182e-04	ci right 2.845073e-04	k: 788	n:2970000
Cons ci ratio: 2.704334e-03	ci left: 4.137703e-01	ci right 4.148911e-01	k: 1230562	n:2970000
KS ci ratio: 1.395371e-01	ci left: 2.471182e-04	ci right 2.845073e-04	k: 788	n:2970000
THSD7B   2970000 perm   3719 sec   (799 perm/sec)   p_kst 2.653199e-04   p_cons 4.143306e-01   p_joint 2.653199e-04

Joint ci ratio: 1.393606e-01	ci left: 2.469366e-04	ci right 2.842471e-04	k: 790	n:2980000
Cons ci ratio: 2.699784e-03	ci left: 4.137728e-01	ci right 4.148918e-01	k: 1234710	n:2980000
KS ci ratio: 1.393606e-01	ci left: 2.469366e-04	ci right 2.842471e-04	k: 790	n:2980000
THSD7B   2980000 perm   3743 sec   (796 perm/sec)   p_kst 2.651007e-04   p_cons 4.143322e-01   p_joint 2.651007e-04

Joint ci ratio: 1.390096e-01	ci left: 2.474020e-04	ci right 2.846808e-04	k: 794	n:2990000
Cons ci ratio: 2.695457e-03	ci left: 4.137392e-01	ci right 4.148563e-01	k: 1238750	n:2990000
KS ci ratio: 1.390096e-01	ci left: 2.474020e-04	ci right 2.846808e-04	k: 794	n:2990000
THSD7B   2990000 perm   3766 sec   (794 perm/sec)   p_kst 2.655518e-04   p_cons 4.142977e-01   p_joint 2.655518e-04

Joint ci ratio: 1.386611e-01	ci left: 2.478643e-04	ci right 2.851114e-04	k: 798	n:3000000
Cons ci ratio: 2.690848e-03	ci left: 4.137605e-01	ci right 4.148757e-01	k: 1242954	n:3000000
KS ci ratio: 1.386611e-01	ci left: 2.478643e-04	ci right 2.851114e-04	k: 798	n:3000000
THSD7B   3000000 perm   3789 sec   (792 perm/sec)   p_kst 2.660000e-04   p_cons 4.143180e-01   p_joint 2.660000e-04

Joint ci ratio: 1.385745e-01	ci left: 2.473616e-04	ci right 2.845080e-04	k: 799	n:3010000
Cons ci ratio: 2.686539e-03	ci left: 4.137318e-01	ci right 4.148451e-01	k: 1247008	n:3010000
KS ci ratio: 1.385745e-01	ci left: 2.473616e-04	ci right 2.845080e-04	k: 799	n:3010000
THSD7B   3010000 perm   3812 sec   (790 perm/sec)   p_kst 2.654485e-04   p_cons 4.142884e-01   p_joint 2.654485e-04

Joint ci ratio: 1.382293e-01	ci left: 2.478211e-04	ci right 2.849362e-04	k: 803	n:3020000
Cons ci ratio: 2.682103e-03	ci left: 4.137298e-01	ci right 4.148412e-01	k: 1251142	n:3020000
KS ci ratio: 1.382293e-01	ci left: 2.478211e-04	ci right 2.849362e-04	k: 803	n:3020000
THSD7B   3020000 perm   3836 sec   (787 perm/sec)   p_kst 2.658940e-04   p_cons 4.142854e-01   p_joint 2.658940e-04

Joint ci ratio: 1.379721e-01	ci left: 2.479591e-04	ci right 2.850201e-04	k: 806	n:3030000
Cons ci ratio: 2.677726e-03	ci left: 4.137212e-01	ci right 4.148308e-01	k: 1255256	n:3030000
KS ci ratio: 1.379721e-01	ci left: 2.479591e-04	ci right 2.850201e-04	k: 806	n:3030000
THSD7B   3030000 perm   3860 sec   (785 perm/sec)   p_kst 2.660066e-04   p_cons 4.142759e-01   p_joint 2.660066e-04

Joint ci ratio: 1.375466e-01	ci left: 2.487315e-04	ci right 2.857839e-04	k: 811	n:3040000
Cons ci ratio: 2.673474e-03	ci left: 4.136939e-01	ci right 4.148017e-01	k: 1259313	n:3040000
KS ci ratio: 1.375466e-01	ci left: 2.487315e-04	ci right 2.857839e-04	k: 811	n:3040000
THSD7B   3040000 perm   3883 sec   (783 perm/sec)   p_kst 2.667763e-04   p_cons 4.142477e-01   p_joint 2.667763e-04

Joint ci ratio: 1.375467e-01	ci left: 2.479160e-04	ci right 2.848469e-04	k: 811	n:3050000
Cons ci ratio: 2.669139e-03	ci left: 4.136855e-01	ci right 4.147914e-01	k: 1263427	n:3050000
KS ci ratio: 1.375467e-01	ci left: 2.479160e-04	ci right 2.848469e-04	k: 811	n:3050000
THSD7B   3050000 perm   3907 sec   (781 perm/sec)   p_kst 2.659016e-04   p_cons 4.142384e-01   p_joint 2.659016e-04

Joint ci ratio: 1.371251e-01	ci left: 2.486837e-04	ci right 2.856062e-04	k: 816	n:3060000
Cons ci ratio: 2.664787e-03	ci left: 4.136840e-01	ci right 4.147881e-01	k: 1267562	n:3060000
KS ci ratio: 1.371251e-01	ci left: 2.486837e-04	ci right 2.856062e-04	k: 816	n:3060000
THSD7B   3060000 perm   3931 sec   (778 perm/sec)   p_kst 2.666667e-04   p_cons 4.142359e-01   p_joint 2.666667e-04

Joint ci ratio: 1.367906e-01	ci left: 2.491319e-04	ci right 2.860234e-04	k: 820	n:3070000
Cons ci ratio: 2.660428e-03	ci left: 4.136877e-01	ci right 4.147900e-01	k: 1271713	n:3070000
KS ci ratio: 1.367906e-01	ci left: 2.491319e-04	ci right 2.860234e-04	k: 820	n:3070000
THSD7B   3070000 perm   3955 sec   (776 perm/sec)   p_kst 2.671010e-04   p_cons 4.142388e-01   p_joint 2.671010e-04

Joint ci ratio: 1.366243e-01	ci left: 2.489502e-04	ci right 2.857663e-04	k: 822	n:3080000
Cons ci ratio: 2.656144e-03	ci left: 4.136816e-01	ci right 4.147822e-01	k: 1275834	n:3080000
KS ci ratio: 1.366243e-01	ci left: 2.489502e-04	ci right 2.857663e-04	k: 822	n:3080000
THSD7B   3080000 perm   3979 sec   (774 perm/sec)   p_kst 2.668831e-04   p_cons 4.142318e-01   p_joint 2.668831e-04

Joint ci ratio: 1.362935e-01	ci left: 2.493948e-04	ci right 2.861801e-04	k: 826	n:3090000
Cons ci ratio: 2.651786e-03	ci left: 4.136928e-01	ci right 4.147915e-01	k: 1280008	n:3090000
KS ci ratio: 1.362935e-01	ci left: 2.493948e-04	ci right 2.861801e-04	k: 826	n:3090000
THSD7B   3090000 perm   4003 sec   (772 perm/sec)   p_kst 2.673139e-04   p_cons 4.142421e-01   p_joint 2.673139e-04

Joint ci ratio: 1.361290e-01	ci left: 2.492135e-04	ci right 2.859241e-04	k: 828	n:3100000
Cons ci ratio: 2.647549e-03	ci left: 4.136858e-01	ci right 4.147828e-01	k: 1284126	n:3100000
KS ci ratio: 1.361290e-01	ci left: 2.492135e-04	ci right 2.859241e-04	k: 828	n:3100000
THSD7B   3100000 perm   4026 sec   (770 perm/sec)   p_kst 2.670968e-04   p_cons 4.142342e-01   p_joint 2.670968e-04

Joint ci ratio: 1.358017e-01	ci left: 2.496546e-04	ci right 2.863346e-04	k: 832	n:3110000
Cons ci ratio: 2.643319e-03	ci left: 4.136811e-01	ci right 4.147763e-01	k: 1288251	n:3110000
KS ci ratio: 1.358017e-01	ci left: 2.496546e-04	ci right 2.863346e-04	k: 832	n:3110000
THSD7B   3110000 perm   4051 sec   (768 perm/sec)   p_kst 2.675241e-04   p_cons 4.142286e-01   p_joint 2.675241e-04

Joint ci ratio: 1.354768e-01	ci left: 2.500930e-04	ci right 2.867424e-04	k: 836	n:3120000
Cons ci ratio: 2.638967e-03	ci left: 4.137027e-01	ci right 4.147962e-01	k: 1292458	n:3120000
KS ci ratio: 1.354768e-01	ci left: 2.500930e-04	ci right 2.867424e-04	k: 836	n:3120000
THSD7B   3120000 perm   4074 sec   (766 perm/sec)   p_kst 2.679487e-04   p_cons 4.142494e-01   p_joint 2.679487e-04

Joint ci ratio: 1.352347e-01	ci left: 2.502200e-04	ci right 2.868172e-04	k: 839	n:3130000
Cons ci ratio: 2.634730e-03	ci left: 4.137069e-01	ci right 4.147987e-01	k: 1296611	n:3130000
KS ci ratio: 1.352347e-01	ci left: 2.502200e-04	ci right 2.868172e-04	k: 839	n:3130000
THSD7B   3130000 perm   4099 sec   (764 perm/sec)   p_kst 2.680511e-04   p_cons 4.142527e-01   p_joint 2.680511e-04

Joint ci ratio: 1.349938e-01	ci left: 2.503462e-04	ci right 2.868915e-04	k: 842	n:3140000
Cons ci ratio: 2.630572e-03	ci left: 4.137003e-01	ci right 4.147903e-01	k: 1300730	n:3140000
KS ci ratio: 1.349938e-01	ci left: 2.503462e-04	ci right 2.868915e-04	k: 842	n:3140000
THSD7B   3140000 perm   4124 sec   (761 perm/sec)   p_kst 2.681529e-04   p_cons 4.142452e-01   p_joint 2.681529e-04

Joint ci ratio: 1.349139e-01	ci left: 2.498582e-04	ci right 2.863089e-04	k: 843	n:3150000
Cons ci ratio: 2.626243e-03	ci left: 4.137290e-01	ci right 4.148172e-01	k: 1304960	n:3150000
KS ci ratio: 1.349139e-01	ci left: 2.498582e-04	ci right 2.863089e-04	k: 843	n:3150000
THSD7B   3150000 perm   4148 sec   (759 perm/sec)   p_kst 2.676190e-04   p_cons 4.142730e-01   p_joint 2.676190e-04

Joint ci ratio: 1.346747e-01	ci left: 2.499849e-04	ci right 2.863842e-04	k: 846	n:3160000
Cons ci ratio: 2.622092e-03	ci left: 4.137283e-01	ci right 4.148149e-01	k: 1309098	n:3160000
KS ci ratio: 1.346747e-01	ci left: 2.499849e-04	ci right 2.863842e-04	k: 846	n:3160000
THSD7B   3160000 perm   4172 sec   (757 perm/sec)   p_kst 2.677215e-04   p_cons 4.142715e-01   p_joint 2.677215e-04

Joint ci ratio: 1.345160e-01	ci left: 2.498059e-04	ci right 2.861329e-04	k: 848	n:3170000
Cons ci ratio: 2.618017e-03	ci left: 4.137173e-01	ci right 4.148021e-01	k: 1313203	n:3170000
KS ci ratio: 1.345160e-01	ci left: 2.498059e-04	ci right 2.861329e-04	k: 848	n:3170000
THSD7B   3170000 perm   4197 sec   (755 perm/sec)   p_kst 2.675079e-04   p_cons 4.142596e-01   p_joint 2.675079e-04

Joint ci ratio: 1.342002e-01	ci left: 2.502360e-04	ci right 2.865333e-04	k: 852	n:3180000
Cons ci ratio: 2.613868e-03	ci left: 4.137236e-01	ci right 4.148067e-01	k: 1317363	n:3180000
KS ci ratio: 1.342002e-01	ci left: 2.502360e-04	ci right 2.865333e-04	k: 852	n:3180000
THSD7B   3180000 perm   4222 sec   (753 perm/sec)   p_kst 2.679245e-04   p_cons 4.142651e-01   p_joint 2.679245e-04

Joint ci ratio: 1.339648e-01	ci left: 2.503604e-04	ci right 2.866070e-04	k: 855	n:3190000
Cons ci ratio: 2.609587e-03	ci left: 4.137581e-01	ci right 4.148395e-01	k: 1321613	n:3190000
KS ci ratio: 1.339648e-01	ci left: 2.503604e-04	ci right 2.866070e-04	k: 855	n:3190000
THSD7B   3190000 perm   4246 sec   (751 perm/sec)   p_kst 2.680251e-04   p_cons 4.142987e-01   p_joint 2.680251e-04

Joint ci ratio: 1.338086e-01	ci left: 2.501821e-04	ci right 2.863573e-04	k: 857	n:3200000
Cons ci ratio: 2.605501e-03	ci left: 4.137599e-01	ci right 4.148396e-01	k: 1325759	n:3200000
KS ci ratio: 1.338086e-01	ci left: 2.501821e-04	ci right 2.863573e-04	k: 857	n:3200000
THSD7B   3200000 perm   4271 sec   (749 perm/sec)   p_kst 2.678125e-04   p_cons 4.142997e-01   p_joint 2.678125e-04

Joint ci ratio: 1.337308e-01	ci left: 2.497038e-04	ci right 2.857871e-04	k: 858	n:3210000
Cons ci ratio: 2.601466e-03	ci left: 4.137557e-01	ci right 4.148338e-01	k: 1329886	n:3210000
KS ci ratio: 1.337308e-01	ci left: 2.497038e-04	ci right 2.857871e-04	k: 858	n:3210000
THSD7B   3210000 perm   4296 sec   (747 perm/sec)   p_kst 2.672897e-04   p_cons 4.142947e-01   p_joint 2.672897e-04

Joint ci ratio: 1.337308e-01	ci left: 2.489284e-04	ci right 2.848996e-04	k: 858	n:3220000
Cons ci ratio: 2.597410e-03	ci left: 4.137591e-01	ci right 4.148355e-01	k: 1334037	n:3220000
KS ci ratio: 1.337308e-01	ci left: 2.489284e-04	ci right 2.848996e-04	k: 858	n:3220000
THSD7B   3220000 perm   4321 sec   (745 perm/sec)   p_kst 2.664596e-04   p_cons 4.142972e-01   p_joint 2.664596e-04

Joint ci ratio: 1.336531e-01	ci left: 2.484569e-04	ci right 2.843375e-04	k: 859	n:3230000
Cons ci ratio: 2.593403e-03	ci left: 4.137568e-01	ci right 4.148316e-01	k: 1338170	n:3230000
KS ci ratio: 1.336531e-01	ci left: 2.484569e-04	ci right 2.843375e-04	k: 859	n:3230000
THSD7B   3230000 perm   4346 sec   (743 perm/sec)   p_kst 2.659443e-04   p_cons 4.142941e-01   p_joint 2.659443e-04

Joint ci ratio: 1.334979e-01	ci left: 2.482867e-04	ci right 2.840978e-04	k: 861	n:3240000
Cons ci ratio: 2.589364e-03	ci left: 4.137639e-01	ci right 4.148369e-01	k: 1342333	n:3240000
KS ci ratio: 1.334979e-01	ci left: 2.482867e-04	ci right 2.840978e-04	k: 861	n:3240000
THSD7B   3240000 perm   4371 sec   (741 perm/sec)   p_kst 2.657407e-04   p_cons 4.143003e-01   p_joint 2.657407e-04

Joint ci ratio: 1.334206e-01	ci left: 2.478202e-04	ci right 2.835417e-04	k: 862	n:3250000
Cons ci ratio: 2.585304e-03	ci left: 4.137785e-01	ci right 4.148499e-01	k: 1346521	n:3250000
KS ci ratio: 1.334206e-01	ci left: 2.478202e-04	ci right 2.835417e-04	k: 862	n:3250000
THSD7B   3250000 perm   4396 sec   (739 perm/sec)   p_kst 2.652308e-04   p_cons 4.143142e-01   p_joint 2.652308e-04

Joint ci ratio: 1.331893e-01	ci left: 2.479496e-04	ci right 2.836228e-04	k: 865	n:3260000
Cons ci ratio: 2.581396e-03	ci left: 4.137680e-01	ci right 4.148377e-01	k: 1350627	n:3260000
KS ci ratio: 1.331893e-01	ci left: 2.479496e-04	ci right 2.836228e-04	k: 865	n:3260000
THSD7B   3260000 perm   4421 sec   (737 perm/sec)   p_kst 2.653374e-04   p_cons 4.143028e-01   p_joint 2.653374e-04

Joint ci ratio: 1.329592e-01	ci left: 2.480782e-04	ci right 2.837034e-04	k: 868	n:3270000
Cons ci ratio: 2.577359e-03	ci left: 4.137853e-01	ci right 4.148534e-01	k: 1354824	n:3270000
KS ci ratio: 1.329592e-01	ci left: 2.480782e-04	ci right 2.837034e-04	k: 868	n:3270000
THSD7B   3270000 perm   4447 sec   (735 perm/sec)   p_kst 2.654434e-04   p_cons 4.143193e-01   p_joint 2.654434e-04

Joint ci ratio: 1.323513e-01	ci left: 2.496800e-04	ci right 2.853584e-04	k: 876	n:3280000
Cons ci ratio: 2.573307e-03	ci left: 4.138086e-01	ci right 4.148751e-01	k: 1359041	n:3280000
KS ci ratio: 1.323513e-01	ci left: 2.496800e-04	ci right 2.853584e-04	k: 876	n:3280000
THSD7B   3280000 perm   4473 sec   (733 perm/sec)   p_kst 2.670732e-04   p_cons 4.143418e-01   p_joint 2.670732e-04

Joint ci ratio: 1.319756e-01	ci left: 2.503906e-04	ci right 2.860610e-04	k: 881	n:3290000
Cons ci ratio: 2.569270e-03	ci left: 4.138327e-01	ci right 4.148976e-01	k: 1363261	n:3290000
KS ci ratio: 1.319756e-01	ci left: 2.503906e-04	ci right 2.860610e-04	k: 881	n:3290000
THSD7B   3290000 perm   4498 sec   (732 perm/sec)   p_kst 2.677812e-04   p_cons 4.143650e-01   p_joint 2.677812e-04

Joint ci ratio: 1.317517e-01	ci left: 2.505109e-04	ci right 2.861332e-04	k: 884	n:3300000
Cons ci ratio: 2.565356e-03	ci left: 4.138369e-01	ci right 4.149002e-01	k: 1367416	n:3300000
KS ci ratio: 1.317517e-01	ci left: 2.505109e-04	ci right 2.861332e-04	k: 884	n:3300000
THSD7B   3300000 perm   4523 sec   (730 perm/sec)   p_kst 2.678788e-04   p_cons 4.143685e-01   p_joint 2.678788e-04

Joint ci ratio: 1.312336e-01	ci left: 2.517993e-04	ci right 2.874531e-04	k: 891	n:3310000
Cons ci ratio: 2.561398e-03	ci left: 4.138529e-01	ci right 4.149146e-01	k: 1371610	n:3310000
KS ci ratio: 1.312336e-01	ci left: 2.517993e-04	ci right 2.874531e-04	k: 891	n:3310000
THSD7B   3310000 perm   4549 sec   (728 perm/sec)   p_kst 2.691843e-04   p_cons 4.143837e-01   p_joint 2.691843e-04

Joint ci ratio: 1.310135e-01	ci left: 2.519149e-04	ci right 2.875205e-04	k: 894	n:3320000
Cons ci ratio: 2.557537e-03	ci left: 4.138538e-01	ci right 4.149139e-01	k: 1375754	n:3320000
KS ci ratio: 1.310135e-01	ci left: 2.519149e-04	ci right 2.875205e-04	k: 894	n:3320000
THSD7B   3320000 perm   4574 sec   (726 perm/sec)   p_kst 2.692771e-04   p_cons 4.143837e-01   p_joint 2.692771e-04

Joint ci ratio: 1.308673e-01	ci left: 2.517393e-04	ci right 2.872773e-04	k: 896	n:3330000
Cons ci ratio: 2.553620e-03	ci left: 4.138687e-01	ci right 4.149272e-01	k: 1379945	n:3330000
KS ci ratio: 1.308673e-01	ci left: 2.517393e-04	ci right 2.872773e-04	k: 896	n:3330000
THSD7B   3330000 perm   4600 sec   (724 perm/sec)   p_kst 2.690691e-04   p_cons 4.143979e-01   p_joint 2.690691e-04

Joint ci ratio: 1.307217e-01	ci left: 2.515648e-04	ci right 2.870356e-04	k: 898	n:3340000
Cons ci ratio: 2.549860e-03	ci left: 4.138570e-01	ci right 4.149139e-01	k: 1384047	n:3340000
KS ci ratio: 1.307217e-01	ci left: 2.515648e-04	ci right 2.870356e-04	k: 898	n:3340000
THSD7B   3340000 perm   4626 sec   (722 perm/sec)   p_kst 2.688623e-04   p_cons 4.143853e-01   p_joint 2.688623e-04

Joint ci ratio: 1.305766e-01	ci left: 2.513914e-04	ci right 2.867953e-04	k: 900	n:3350000
Cons ci ratio: 2.546009e-03	ci left: 4.138658e-01	ci right 4.149212e-01	k: 1388218	n:3350000
KS ci ratio: 1.305766e-01	ci left: 2.513914e-04	ci right 2.867953e-04	k: 900	n:3350000
THSD7B   3350000 perm   4651 sec   (720 perm/sec)   p_kst 2.686567e-04   p_cons 4.143934e-01   p_joint 2.686567e-04

Joint ci ratio: 1.303597e-01	ci left: 2.515069e-04	ci right 2.868637e-04	k: 903	n:3360000
Cons ci ratio: 2.542285e-03	ci left: 4.138539e-01	ci right 4.149076e-01	k: 1392319	n:3360000
KS ci ratio: 1.303597e-01	ci left: 2.515069e-04	ci right 2.868637e-04	k: 903	n:3360000
THSD7B   3360000 perm   4677 sec   (718 perm/sec)   p_kst 2.687500e-04   p_cons 4.143807e-01   p_joint 2.687500e-04

Joint ci ratio: 1.302158e-01	ci left: 2.513347e-04	ci right 2.866253e-04	k: 905	n:3370000
Cons ci ratio: 2.538576e-03	ci left: 4.138419e-01	ci right 4.148941e-01	k: 1396420	n:3370000
KS ci ratio: 1.302158e-01	ci left: 2.513347e-04	ci right 2.866253e-04	k: 905	n:3370000
THSD7B   3370000 perm   4703 sec   (717 perm/sec)   p_kst 2.685460e-04   p_cons 4.143680e-01   p_joint 2.685460e-04

Joint ci ratio: 1.299292e-01	ci left: 2.517360e-04	ci right 2.869992e-04	k: 909	n:3380000
Cons ci ratio: 2.534825e-03	ci left: 4.138413e-01	ci right 4.148920e-01	k: 1400559	n:3380000
KS ci ratio: 1.299292e-01	ci left: 2.517360e-04	ci right 2.869992e-04	k: 909	n:3380000
THSD7B   3380000 perm   4730 sec   (715 perm/sec)   p_kst 2.689349e-04   p_cons 4.143666e-01   p_joint 2.689349e-04

Joint ci ratio: 1.298579e-01	ci left: 2.512788e-04	ci right 2.864572e-04	k: 910	n:3390000
Cons ci ratio: 2.531177e-03	ci left: 4.138242e-01	ci right 4.148733e-01	k: 1404642	n:3390000
KS ci ratio: 1.298579e-01	ci left: 2.512788e-04	ci right 2.864572e-04	k: 910	n:3390000
THSD7B   3390000 perm   4756 sec   (713 perm/sec)   p_kst 2.684366e-04   p_cons 4.143487e-01   p_joint 2.684366e-04

Joint ci ratio: 1.297867e-01	ci left: 2.508244e-04	ci right 2.859183e-04	k: 911	n:3400000
Cons ci ratio: 2.527373e-03	ci left: 4.138401e-01	ci right 4.148877e-01	k: 1408837	n:3400000
KS ci ratio: 1.297867e-01	ci left: 2.508244e-04	ci right 2.859183e-04	k: 911	n:3400000
THSD7B   3400000 perm   4782 sec   (711 perm/sec)   p_kst 2.679412e-04   p_cons 4.143638e-01   p_joint 2.679412e-04

Joint ci ratio: 1.295738e-01	ci left: 2.509400e-04	ci right 2.859881e-04	k: 914	n:3410000
Cons ci ratio: 2.523603e-03	ci left: 4.138527e-01	ci right 4.148987e-01	k: 1413021	n:3410000
KS ci ratio: 1.295738e-01	ci left: 2.509400e-04	ci right 2.859881e-04	k: 914	n:3410000
THSD7B   3410000 perm   4809 sec   (709 perm/sec)   p_kst 2.680352e-04   p_cons 4.143757e-01   p_joint 2.680352e-04

Joint ci ratio: 1.293619e-01	ci left: 2.510551e-04	ci right 2.860575e-04	k: 917	n:3420000
Cons ci ratio: 2.519962e-03	ci left: 4.138436e-01	ci right 4.148881e-01	k: 1417131	n:3420000
KS ci ratio: 1.293619e-01	ci left: 2.510551e-04	ci right 2.860575e-04	k: 917	n:3420000
THSD7B   3420000 perm   4834 sec   (707 perm/sec)   p_kst 2.681287e-04   p_cons 4.143658e-01   p_joint 2.681287e-04

Joint ci ratio: 1.292212e-01	ci left: 2.508874e-04	ci right 2.858254e-04	k: 919	n:3430000
Cons ci ratio: 2.516414e-03	ci left: 4.138197e-01	ci right 4.148626e-01	k: 1421190	n:3430000
KS ci ratio: 1.292212e-01	ci left: 2.508874e-04	ci right 2.858254e-04	k: 919	n:3430000
THSD7B   3430000 perm   4861 sec   (706 perm/sec)   p_kst 2.679300e-04   p_cons 4.143411e-01   p_joint 2.679300e-04

Joint ci ratio: 1.291511e-01	ci left: 2.504393e-04	ci right 2.852947e-04	k: 920	n:3440000
Cons ci ratio: 2.512741e-03	ci left: 4.138230e-01	ci right 4.148644e-01	k: 1425342	n:3440000
KS ci ratio: 1.291511e-01	ci left: 2.504393e-04	ci right 2.852947e-04	k: 920	n:3440000
THSD7B   3440000 perm   4887 sec   (704 perm/sec)   p_kst 2.674419e-04   p_cons 4.143436e-01   p_joint 2.674419e-04

Joint ci ratio: 1.289412e-01	ci left: 2.505549e-04	ci right 2.853653e-04	k: 923	n:3450000
Cons ci ratio: 2.509033e-03	ci left: 4.138361e-01	ci right 4.148760e-01	k: 1429528	n:3450000
KS ci ratio: 1.289412e-01	ci left: 2.505549e-04	ci right 2.853653e-04	k: 923	n:3450000
THSD7B   3450000 perm   4914 sec   (702 perm/sec)   p_kst 2.675362e-04   p_cons 4.143559e-01   p_joint 2.675362e-04

Joint ci ratio: 1.286630e-01	ci left: 2.509496e-04	ci right 2.857339e-04	k: 927	n:3460000
Cons ci ratio: 2.505217e-03	ci left: 4.138731e-01	ci right 4.149115e-01	k: 1433797	n:3460000
KS ci ratio: 1.286630e-01	ci left: 2.509496e-04	ci right 2.857339e-04	k: 927	n:3460000
THSD7B   3460000 perm   4940 sec   (700 perm/sec)   p_kst 2.679191e-04   p_cons 4.143922e-01   p_joint 2.679191e-04

Joint ci ratio: 1.284556e-01	ci left: 2.510631e-04	ci right 2.858028e-04	k: 930	n:3470000
Cons ci ratio: 2.501636e-03	ci left: 4.138678e-01	ci right 4.149047e-01	k: 1437920	n:3470000
KS ci ratio: 1.284556e-01	ci left: 2.510631e-04	ci right 2.858028e-04	k: 930	n:3470000
THSD7B   3470000 perm   4967 sec   (699 perm/sec)   p_kst 2.680115e-04   p_cons 4.143862e-01   p_joint 2.680115e-04

Joint ci ratio: 1.281805e-01	ci left: 2.514542e-04	ci right 2.861678e-04	k: 934	n:3480000
Cons ci ratio: 2.497980e-03	ci left: 4.138801e-01	ci right 4.149155e-01	k: 1442104	n:3480000
KS ci ratio: 1.281805e-01	ci left: 2.514542e-04	ci right 2.861678e-04	k: 934	n:3480000
THSD7B   3480000 perm   4994 sec   (697 perm/sec)   p_kst 2.683908e-04   p_cons 4.143977e-01   p_joint 2.683908e-04

Joint ci ratio: 1.281120e-01	ci left: 2.510111e-04	ci right 2.856435e-04	k: 935	n:3490000
Cons ci ratio: 2.494344e-03	ci left: 4.138914e-01	ci right 4.149254e-01	k: 1446285	n:3490000
KS ci ratio: 1.281120e-01	ci left: 2.510111e-04	ci right 2.856435e-04	k: 935	n:3490000
THSD7B   3490000 perm   5021 sec   (695 perm/sec)   p_kst 2.679083e-04   p_cons 4.144083e-01   p_joint 2.679083e-04

Joint ci ratio: 1.279072e-01	ci left: 2.511236e-04	ci right 2.857120e-04	k: 938	n:3500000
Cons ci ratio: 2.490699e-03	ci left: 4.139075e-01	ci right 4.149400e-01	k: 1450483	n:3500000
KS ci ratio: 1.279072e-01	ci left: 2.511236e-04	ci right 2.857120e-04	k: 938	n:3500000
THSD7B   3500000 perm   5047 sec   (694 perm/sec)   p_kst 2.680000e-04   p_cons 4.144237e-01   p_joint 2.680000e-04

Joint ci ratio: 1.279072e-01	ci left: 2.504081e-04	ci right 2.848980e-04	k: 938	n:3510000
Cons ci ratio: 2.487153e-03	ci left: 4.139074e-01	ci right 4.149384e-01	k: 1454624	n:3510000
KS ci ratio: 1.279072e-01	ci left: 2.504081e-04	ci right 2.848980e-04	k: 938	n:3510000
THSD7B   3510000 perm   5074 sec   (692 perm/sec)   p_kst 2.672365e-04   p_cons 4.144228e-01   p_joint 2.672365e-04

Joint ci ratio: 1.277034e-01	ci left: 2.505218e-04	ci right 2.849681e-04	k: 941	n:3520000
Cons ci ratio: 2.483493e-03	ci left: 4.139325e-01	ci right 4.149620e-01	k: 1458854	n:3520000
KS ci ratio: 1.277034e-01	ci left: 2.505218e-04	ci right 2.849681e-04	k: 941	n:3520000
THSD7B   3520000 perm   5101 sec   (690 perm/sec)   p_kst 2.673295e-04   p_cons 4.144472e-01   p_joint 2.673295e-04

Joint ci ratio: 1.275005e-01	ci left: 2.506348e-04	ci right 2.850378e-04	k: 944	n:3530000
Cons ci ratio: 2.479969e-03	ci left: 4.139339e-01	ci right 4.149620e-01	k: 1463001	n:3530000
KS ci ratio: 1.275005e-01	ci left: 2.506348e-04	ci right 2.850378e-04	k: 944	n:3530000
THSD7B   3530000 perm   5127 sec   (688 perm/sec)   p_kst 2.674221e-04   p_cons 4.144479e-01   p_joint 2.674221e-04

Joint ci ratio: 1.273658e-01	ci left: 2.504738e-04	ci right 2.848156e-04	k: 946	n:3540000
Cons ci ratio: 2.476489e-03	ci left: 4.139297e-01	ci right 4.149563e-01	k: 1467128	n:3540000
KS ci ratio: 1.273658e-01	ci left: 2.504738e-04	ci right 2.848156e-04	k: 946	n:3540000
THSD7B   3540000 perm   5155 sec   (687 perm/sec)   p_kst 2.672316e-04   p_cons 4.144429e-01   p_joint 2.672316e-04

Joint ci ratio: 1.270977e-01	ci left: 2.508591e-04	ci right 2.851759e-04	k: 950	n:3550000
Cons ci ratio: 2.473031e-03	ci left: 4.139241e-01	ci right 4.149493e-01	k: 1471250	n:3550000
KS ci ratio: 1.270977e-01	ci left: 2.508591e-04	ci right 2.851759e-04	k: 950	n:3550000
THSD7B   3550000 perm   5182 sec   (685 perm/sec)   p_kst 2.676056e-04   p_cons 4.144366e-01   p_joint 2.676056e-04

Joint ci ratio: 1.270309e-01	ci left: 2.504264e-04	ci right 2.846647e-04	k: 951	n:3560000
Cons ci ratio: 2.469637e-03	ci left: 4.139087e-01	ci right 4.149324e-01	k: 1475337	n:3560000
KS ci ratio: 1.270309e-01	ci left: 2.504264e-04	ci right 2.846647e-04	k: 951	n:3560000
THSD7B   3560000 perm   5209 sec   (683 perm/sec)   p_kst 2.671348e-04   p_cons 4.144205e-01   p_joint 2.671348e-04

Joint ci ratio: 1.268977e-01	ci left: 2.502674e-04	ci right 2.844453e-04	k: 953	n:3570000
Cons ci ratio: 2.466203e-03	ci left: 4.139040e-01	ci right 4.149263e-01	k: 1479462	n:3570000
KS ci ratio: 1.268977e-01	ci left: 2.502674e-04	ci right 2.844453e-04	k: 953	n:3570000
THSD7B   3570000 perm   5236 sec   (682 perm/sec)   p_kst 2.669468e-04   p_cons 4.144151e-01   p_joint 2.669468e-04

Joint ci ratio: 1.267649e-01	ci left: 2.501092e-04	ci right 2.842272e-04	k: 955	n:3580000
Cons ci ratio: 2.462852e-03	ci left: 4.138860e-01	ci right 4.149069e-01	k: 1483539	n:3580000
KS ci ratio: 1.267649e-01	ci left: 2.501092e-04	ci right 2.842272e-04	k: 955	n:3580000
THSD7B   3580000 perm   5263 sec   (680 perm/sec)   p_kst 2.667598e-04   p_cons 4.143964e-01   p_joint 2.667598e-04

Joint ci ratio: 1.264347e-01	ci left: 2.507612e-04	ci right 2.848723e-04	k: 960	n:3590000
Cons ci ratio: 2.459355e-03	ci left: 4.138993e-01	ci right 4.149187e-01	k: 1487728	n:3590000
KS ci ratio: 1.264347e-01	ci left: 2.507612e-04	ci right 2.848723e-04	k: 960	n:3590000
THSD7B   3590000 perm   5291 sec   (679 perm/sec)   p_kst 2.674095e-04   p_cons 4.144089e-01   p_joint 2.674095e-04

Joint ci ratio: 1.261070e-01	ci left: 2.514097e-04	ci right 2.855137e-04	k: 965	n:3600000
Cons ci ratio: 2.455973e-03	ci left: 4.138930e-01	ci right 4.149110e-01	k: 1491847	n:3600000
KS ci ratio: 1.261070e-01	ci left: 2.514097e-04	ci right 2.855137e-04	k: 965	n:3600000
THSD7B   3600000 perm   5319 sec   (677 perm/sec)   p_kst 2.680556e-04   p_cons 4.144019e-01   p_joint 2.680556e-04

Joint ci ratio: 1.259767e-01	ci left: 2.512498e-04	ci right 2.852943e-04	k: 967	n:3610000
Cons ci ratio: 2.452469e-03	ci left: 4.139134e-01	ci right 4.149300e-01	k: 1496062	n:3610000
KS ci ratio: 1.259767e-01	ci left: 2.512498e-04	ci right 2.852943e-04	k: 967	n:3610000
THSD7B   3610000 perm   5346 sec   (675 perm/sec)   p_kst 2.678670e-04   p_cons 4.144216e-01   p_joint 2.678670e-04

Joint ci ratio: 1.255235e-01	ci left: 2.524286e-04	ci right 2.865007e-04	k: 974	n:3620000
Cons ci ratio: 2.449066e-03	ci left: 4.139168e-01	ci right 4.149320e-01	k: 1500216	n:3620000
KS ci ratio: 1.255235e-01	ci left: 2.524286e-04	ci right 2.865007e-04	k: 974	n:3620000
THSD7B   3620000 perm   5374 sec   (674 perm/sec)   p_kst 2.690608e-04   p_cons 4.144243e-01   p_joint 2.690608e-04

Joint ci ratio: 1.252668e-01	ci left: 2.528006e-04	ci right 2.868479e-04	k: 978	n:3630000
Cons ci ratio: 2.445674e-03	ci left: 4.139207e-01	ci right 4.149345e-01	k: 1504372	n:3630000
KS ci ratio: 1.252668e-01	ci left: 2.528006e-04	ci right 2.868479e-04	k: 978	n:3630000
THSD7B   3630000 perm   5402 sec   (672 perm/sec)   p_kst 2.694215e-04   p_cons 4.144275e-01   p_joint 2.694215e-04

Joint ci ratio: 1.250117e-01	ci left: 2.531706e-04	ci right 2.871931e-04	k: 982	n:3640000
Cons ci ratio: 2.442300e-03	ci left: 4.139238e-01	ci right 4.149362e-01	k: 1508525	n:3640000
KS ci ratio: 1.250117e-01	ci left: 2.531706e-04	ci right 2.871931e-04	k: 982	n:3640000
THSD7B   3640000 perm   5430 sec   (670 perm/sec)   p_kst 2.697802e-04   p_cons 4.144299e-01   p_joint 2.697802e-04

Joint ci ratio: 1.249482e-01	ci left: 2.527424e-04	ci right 2.866888e-04	k: 983	n:3650000
Cons ci ratio: 2.438885e-03	ci left: 4.139378e-01	ci right 4.149489e-01	k: 1512718	n:3650000
KS ci ratio: 1.249482e-01	ci left: 2.527424e-04	ci right 2.866888e-04	k: 983	n:3650000
THSD7B   3650000 perm   5458 sec   (669 perm/sec)   p_kst 2.693151e-04   p_cons 4.144433e-01   p_joint 2.693151e-04

Joint ci ratio: 1.246319e-01	ci left: 2.533753e-04	ci right 2.873143e-04	k: 988	n:3660000
Cons ci ratio: 2.435543e-03	ci left: 4.139400e-01	ci right 4.149497e-01	k: 1516868	n:3660000
KS ci ratio: 1.246319e-01	ci left: 2.533753e-04	ci right 2.873143e-04	k: 988	n:3660000
THSD7B   3660000 perm   5487 sec   (667 perm/sec)   p_kst 2.699454e-04   p_cons 4.144448e-01   p_joint 2.699454e-04

Joint ci ratio: 1.245690e-01	ci left: 2.529489e-04	ci right 2.868123e-04	k: 989	n:3670000
Cons ci ratio: 2.432318e-03	ci left: 4.139218e-01	ci right 4.149301e-01	k: 1520943	n:3670000
KS ci ratio: 1.245690e-01	ci left: 2.529489e-04	ci right 2.868123e-04	k: 989	n:3670000
THSD7B   3670000 perm   5515 sec   (665 perm/sec)   p_kst 2.694823e-04   p_cons 4.144259e-01   p_joint 2.694823e-04

Joint ci ratio: 1.243806e-01	ci left: 2.530514e-04	ci right 2.868736e-04	k: 992	n:3680000
Cons ci ratio: 2.428913e-03	ci left: 4.139420e-01	ci right 4.149489e-01	k: 1525159	n:3680000
KS ci ratio: 1.243806e-01	ci left: 2.530514e-04	ci right 2.868736e-04	k: 992	n:3680000
THSD7B   3680000 perm   5542 sec   (664 perm/sec)   p_kst 2.695652e-04   p_cons 4.144454e-01   p_joint 2.695652e-04

Joint ci ratio: 1.243181e-01	ci left: 2.526282e-04	ci right 2.863756e-04	k: 993	n:3690000
Cons ci ratio: 2.425630e-03	ci left: 4.139407e-01	ci right 4.149462e-01	k: 1529296	n:3690000
KS ci ratio: 1.243181e-01	ci left: 2.526282e-04	ci right 2.863756e-04	k: 993	n:3690000
THSD7B   3690000 perm   5572 sec   (662 perm/sec)   p_kst 2.691057e-04   p_cons 4.144434e-01   p_joint 2.691057e-04

Joint ci ratio: 1.241309e-01	ci left: 2.527310e-04	ci right 2.864376e-04	k: 996	n:3700000
Cons ci ratio: 2.422348e-03	ci left: 4.139418e-01	ci right 4.149459e-01	k: 1533442	n:3700000
KS ci ratio: 1.241309e-01	ci left: 2.527310e-04	ci right 2.864376e-04	k: 996	n:3700000
THSD7B   3700000 perm   5600 sec   (661 perm/sec)   p_kst 2.691892e-04   p_cons 4.144438e-01   p_joint 2.691892e-04

Joint ci ratio: 1.240066e-01	ci left: 2.525721e-04	ci right 2.862213e-04	k: 998	n:3710000
Cons ci ratio: 2.419151e-03	ci left: 4.139283e-01	ci right 4.149311e-01	k: 1537534	n:3710000
KS ci ratio: 1.240066e-01	ci left: 2.525721e-04	ci right 2.862213e-04	k: 998	n:3710000
THSD7B   3710000 perm   5628 sec   (659 perm/sec)   p_kst 2.690027e-04   p_cons 4.144296e-01   p_joint 2.690027e-04

Joint ci ratio: 1.239446e-01	ci left: 2.521537e-04	ci right 2.857290e-04	k: 999	n:3720000
Cons ci ratio: 2.415901e-03	ci left: 4.139284e-01	ci right 4.149298e-01	k: 1541676	n:3720000
KS ci ratio: 1.239446e-01	ci left: 2.521537e-04	ci right 2.857290e-04	k: 999	n:3720000
THSD7B   3720000 perm   5656 sec   (658 perm/sec)   p_kst 2.685484e-04   p_cons 4.144290e-01   p_joint 2.685484e-04

Joint ci ratio: 1.238209e-01	ci left: 2.519972e-04	ci right 2.855158e-04	k: 1001	n:3730000
Cons ci ratio: 2.412724e-03	ci left: 4.139161e-01	ci right 4.149162e-01	k: 1545772	n:3730000
KS ci ratio: 1.238209e-01	ci left: 2.519972e-04	ci right 2.855158e-04	k: 1001	n:3730000
THSD7B   3730000 perm   5684 sec   (656 perm/sec)   p_kst 2.683646e-04   p_cons 4.144161e-01   p_joint 2.683646e-04

Joint ci ratio: 1.238209e-01	ci left: 2.513234e-04	ci right 2.847524e-04	k: 1001	n:3740000
Cons ci ratio: 2.409545e-03	ci left: 4.139071e-01	ci right 4.149059e-01	k: 1549880	n:3740000
KS ci ratio: 1.238209e-01	ci left: 2.513234e-04	ci right 2.847524e-04	k: 1001	n:3740000
THSD7B   3740000 perm   5713 sec   (655 perm/sec)   p_kst 2.676471e-04   p_cons 4.144064e-01   p_joint 2.676471e-04

Joint ci ratio: 1.235745e-01	ci left: 2.516869e-04	ci right 2.850927e-04	k: 1005	n:3750000
Cons ci ratio: 2.406315e-03	ci left: 4.139107e-01	ci right 4.149081e-01	k: 1554035	n:3750000
KS ci ratio: 1.235745e-01	ci left: 2.516869e-04	ci right 2.850927e-04	k: 1005	n:3750000
THSD7B   3750000 perm   5741 sec   (653 perm/sec)   p_kst 2.680000e-04   p_cons 4.144093e-01   p_joint 2.680000e-04

Joint ci ratio: 1.233906e-01	ci left: 2.517907e-04	ci right 2.851570e-04	k: 1008	n:3760000
Cons ci ratio: 2.403008e-03	ci left: 4.139326e-01	ci right 4.149287e-01	k: 1558259	n:3760000
KS ci ratio: 1.233906e-01	ci left: 2.517907e-04	ci right 2.851570e-04	k: 1008	n:3760000
THSD7B   3760000 perm   5770 sec   (652 perm/sec)   p_kst 2.680851e-04   p_cons 4.144306e-01   p_joint 2.680851e-04

Joint ci ratio: 1.233907e-01	ci left: 2.511228e-04	ci right 2.844006e-04	k: 1008	n:3770000
Cons ci ratio: 2.399856e-03	ci left: 4.139257e-01	ci right 4.149205e-01	k: 1562375	n:3770000
KS ci ratio: 1.233907e-01	ci left: 2.511228e-04	ci right 2.844006e-04	k: 1008	n:3770000
THSD7B   3770000 perm   5799 sec   (650 perm/sec)   p_kst 2.673740e-04   p_cons 4.144231e-01   p_joint 2.673740e-04

Joint ci ratio: 1.233296e-01	ci left: 2.507149e-04	ci right 2.839209e-04	k: 1009	n:3780000
Cons ci ratio: 2.396782e-03	ci left: 4.139057e-01	ci right 4.148992e-01	k: 1566441	n:3780000
KS ci ratio: 1.233296e-01	ci left: 2.507149e-04	ci right 2.839209e-04	k: 1009	n:3780000
THSD7B   3780000 perm   5828 sec   (649 perm/sec)   p_kst 2.669312e-04   p_cons 4.144024e-01   p_joint 2.669312e-04

Joint ci ratio: 1.232077e-01	ci left: 2.505648e-04	ci right 2.837158e-04	k: 1011	n:3790000
Cons ci ratio: 2.393658e-03	ci left: 4.138982e-01	ci right 4.148903e-01	k: 1570554	n:3790000
KS ci ratio: 1.232077e-01	ci left: 2.505648e-04	ci right 2.837158e-04	k: 1011	n:3790000
THSD7B   3790000 perm   5857 sec   (647 perm/sec)   p_kst 2.667546e-04   p_cons 4.143942e-01   p_joint 2.667546e-04

Joint ci ratio: 1.230255e-01	ci left: 2.506706e-04	ci right 2.837829e-04	k: 1014	n:3800000
Cons ci ratio: 2.390532e-03	ci left: 4.138936e-01	ci right 4.148844e-01	k: 1574678	n:3800000
KS ci ratio: 1.230255e-01	ci left: 2.506706e-04	ci right 2.837829e-04	k: 1014	n:3800000
THSD7B   3800000 perm   5886 sec   (646 perm/sec)   p_kst 2.668421e-04   p_cons 4.143889e-01   p_joint 2.668421e-04

Joint ci ratio: 1.230255e-01	ci left: 2.500126e-04	ci right 2.830381e-04	k: 1014	n:3810000
Cons ci ratio: 2.387384e-03	ci left: 4.138961e-01	ci right 4.148857e-01	k: 1578829	n:3810000
KS ci ratio: 1.230255e-01	ci left: 2.500126e-04	ci right 2.830381e-04	k: 1014	n:3810000
THSD7B   3810000 perm   5915 sec   (644 perm/sec)   p_kst 2.661417e-04   p_cons 4.143908e-01   p_joint 2.661417e-04

Joint ci ratio: 1.229650e-01	ci left: 2.496119e-04	ci right 2.825670e-04	k: 1015	n:3820000
Cons ci ratio: 2.384243e-03	ci left: 4.138997e-01	ci right 4.148879e-01	k: 1582984	n:3820000
KS ci ratio: 1.229650e-01	ci left: 2.496119e-04	ci right 2.825670e-04	k: 1015	n:3820000
THSD7B   3820000 perm   5944 sec   (643 perm/sec)   p_kst 2.657068e-04   p_cons 4.143937e-01   p_joint 2.657068e-04

Joint ci ratio: 1.229650e-01	ci left: 2.489602e-04	ci right 2.818292e-04	k: 1015	n:3830000
Cons ci ratio: 2.381225e-03	ci left: 4.138805e-01	ci right 4.148674e-01	k: 1587052	n:3830000
KS ci ratio: 1.229650e-01	ci left: 2.489602e-04	ci right 2.818292e-04	k: 1015	n:3830000
THSD7B   3830000 perm   5973 sec   (641 perm/sec)   p_kst 2.650131e-04   p_cons 4.143739e-01   p_joint 2.650131e-04

Joint ci ratio: 1.227236e-01	ci left: 2.493215e-04	ci right 2.821690e-04	k: 1019	n:3840000
Cons ci ratio: 2.378111e-03	ci left: 4.138835e-01	ci right 4.148692e-01	k: 1591205	n:3840000
KS ci ratio: 1.227236e-01	ci left: 2.493215e-04	ci right 2.821690e-04	k: 1019	n:3840000
THSD7B   3840000 perm   6002 sec   (640 perm/sec)   p_kst 2.653646e-04   p_cons 4.143763e-01   p_joint 2.653646e-04

Joint ci ratio: 1.224239e-01	ci left: 2.499328e-04	ci right 2.827746e-04	k: 1024	n:3850000
Cons ci ratio: 2.375038e-03	ci left: 4.138806e-01	ci right 4.148650e-01	k: 1595335	n:3850000
KS ci ratio: 1.224239e-01	ci left: 2.499328e-04	ci right 2.827746e-04	k: 1024	n:3850000
THSD7B   3850000 perm   6032 sec   (638 perm/sec)   p_kst 2.659740e-04   p_cons 4.143727e-01   p_joint 2.659740e-04

Joint ci ratio: 1.220671e-01	ci left: 2.507922e-04	ci right 2.836439e-04	k: 1030	n:3860000
Cons ci ratio: 2.371905e-03	ci left: 4.138924e-01	ci right 4.148756e-01	k: 1599522	n:3860000
KS ci ratio: 1.220671e-01	ci left: 2.507922e-04	ci right 2.836439e-04	k: 1030	n:3860000
THSD7B   3860000 perm   6061 sec   (637 perm/sec)   p_kst 2.668394e-04   p_cons 4.143839e-01   p_joint 2.668394e-04

Joint ci ratio: 1.219489e-01	ci left: 2.506451e-04	ci right 2.834435e-04	k: 1032	n:3870000
Cons ci ratio: 2.368860e-03	ci left: 4.138887e-01	ci right 4.148706e-01	k: 1603649	n:3870000
KS ci ratio: 1.219489e-01	ci left: 2.506451e-04	ci right 2.834435e-04	k: 1032	n:3870000
THSD7B   3870000 perm   6090 sec   (635 perm/sec)   p_kst 2.666667e-04   p_cons 4.143796e-01   p_joint 2.666667e-04

Joint ci ratio: 1.217135e-01	ci left: 2.509987e-04	ci right 2.837753e-04	k: 1036	n:3880000
Cons ci ratio: 2.365777e-03	ci left: 4.138951e-01	ci right 4.148757e-01	k: 1607815	n:3880000
KS ci ratio: 1.217135e-01	ci left: 2.509987e-04	ci right 2.837753e-04	k: 1036	n:3880000
THSD7B   3880000 perm   6120 sec   (634 perm/sec)   p_kst 2.670103e-04   p_cons 4.143853e-01   p_joint 2.670103e-04

Joint ci ratio: 1.214794e-01	ci left: 2.513504e-04	ci right 2.841054e-04	k: 1040	n:3890000
Cons ci ratio: 2.362745e-03	ci left: 4.138934e-01	ci right 4.148728e-01	k: 1611950	n:3890000
KS ci ratio: 1.214794e-01	ci left: 2.513504e-04	ci right 2.841054e-04	k: 1040	n:3890000
THSD7B   3890000 perm   6149 sec   (633 perm/sec)   p_kst 2.673522e-04   p_cons 4.143830e-01   p_joint 2.673522e-04

Joint ci ratio: 1.211307e-01	ci left: 2.521977e-04	ci right 2.849620e-04	k: 1046	n:3900000
Cons ci ratio: 2.359815e-03	ci left: 4.138733e-01	ci right 4.148514e-01	k: 1616013	n:3900000
KS ci ratio: 1.211307e-01	ci left: 2.521977e-04	ci right 2.849620e-04	k: 1046	n:3900000
THSD7B   3900000 perm   6179 sec   (631 perm/sec)   p_kst 2.682051e-04   p_cons 4.143623e-01   p_joint 2.682051e-04

Joint ci ratio: 1.210152e-01	ci left: 2.520487e-04	ci right 2.847602e-04	k: 1048	n:3910000
Cons ci ratio: 2.356707e-03	ci left: 4.138922e-01	ci right 4.148690e-01	k: 1620228	n:3910000
KS ci ratio: 1.210152e-01	ci left: 2.520487e-04	ci right 2.847602e-04	k: 1048	n:3910000
THSD7B   3910000 perm   6209 sec   (630 perm/sec)   p_kst 2.680307e-04   p_cons 4.143806e-01   p_joint 2.680307e-04

Joint ci ratio: 1.209576e-01	ci left: 2.516531e-04	ci right 2.842966e-04	k: 1049	n:3920000
Cons ci ratio: 2.353645e-03	ci left: 4.139039e-01	ci right 4.148794e-01	k: 1624415	n:3920000
KS ci ratio: 1.209576e-01	ci left: 2.516531e-04	ci right 2.842966e-04	k: 1049	n:3920000
THSD7B   3920000 perm   6239 sec   (628 perm/sec)   p_kst 2.676020e-04   p_cons 4.143916e-01   p_joint 2.676020e-04

Joint ci ratio: 1.208426e-01	ci left: 2.515063e-04	ci right 2.840975e-04	k: 1051	n:3930000
Cons ci ratio: 2.350670e-03	ci left: 4.139002e-01	ci right 4.148745e-01	k: 1628542	n:3930000
KS ci ratio: 1.208426e-01	ci left: 2.515063e-04	ci right 2.840975e-04	k: 1051	n:3930000
THSD7B   3930000 perm   6269 sec   (627 perm/sec)   p_kst 2.674300e-04   p_cons 4.143873e-01   p_joint 2.674300e-04

Joint ci ratio: 1.206706e-01	ci left: 2.516064e-04	ci right 2.841608e-04	k: 1054	n:3940000
Cons ci ratio: 2.347722e-03	ci left: 4.138932e-01	ci right 4.148663e-01	k: 1632656	n:3940000
KS ci ratio: 1.206706e-01	ci left: 2.516064e-04	ci right 2.841608e-04	k: 1054	n:3940000
THSD7B   3940000 perm   6299 sec   (625 perm/sec)   p_kst 2.675127e-04   p_cons 4.143797e-01   p_joint 2.675127e-04

Joint ci ratio: 1.205564e-01	ci left: 2.514605e-04	ci right 2.839630e-04	k: 1056	n:3950000
Cons ci ratio: 2.344656e-03	ci left: 4.139129e-01	ci right 4.148847e-01	k: 1636875	n:3950000
KS ci ratio: 1.205564e-01	ci left: 2.514605e-04	ci right 2.839630e-04	k: 1056	n:3950000
THSD7B   3950000 perm   6329 sec   (624 perm/sec)   p_kst 2.673418e-04   p_cons 4.143987e-01   p_joint 2.673418e-04

Joint ci ratio: 1.202157e-01	ci left: 2.522950e-04	ci right 2.848067e-04	k: 1062	n:3960000
Cons ci ratio: 2.341666e-03	ci left: 4.139193e-01	ci right 4.148899e-01	k: 1641042	n:3960000
KS ci ratio: 1.202157e-01	ci left: 2.522950e-04	ci right 2.848067e-04	k: 1062	n:3960000
THSD7B   3960000 perm   6360 sec   (623 perm/sec)   p_kst 2.681818e-04   p_cons 4.144045e-01   p_joint 2.681818e-04

Joint ci ratio: 1.199901e-01	ci left: 2.526368e-04	ci right 2.851271e-04	k: 1066	n:3970000
Cons ci ratio: 2.338678e-03	ci left: 4.139274e-01	ci right 4.148969e-01	k: 1645216	n:3970000
KS ci ratio: 1.199901e-01	ci left: 2.526368e-04	ci right 2.851271e-04	k: 1066	n:3970000
THSD7B   3970000 perm   6390 sec   (621 perm/sec)   p_kst 2.685139e-04   p_cons 4.144121e-01   p_joint 2.685139e-04

Joint ci ratio: 1.197099e-01	ci left: 2.532206e-04	ci right 2.857046e-04	k: 1071	n:3980000
Cons ci ratio: 2.335725e-03	ci left: 4.139308e-01	ci right 4.148990e-01	k: 1649371	n:3980000
KS ci ratio: 1.197099e-01	ci left: 2.532206e-04	ci right 2.857046e-04	k: 1071	n:3980000
THSD7B   3980000 perm   6420 sec   (620 perm/sec)   p_kst 2.690955e-04   p_cons 4.144148e-01   p_joint 2.690955e-04

Joint ci ratio: 1.194872e-01	ci left: 2.535585e-04	ci right 2.860210e-04	k: 1075	n:3990000
Cons ci ratio: 2.332654e-03	ci left: 4.139609e-01	ci right 4.149279e-01	k: 1653633	n:3990000
KS ci ratio: 1.194872e-01	ci left: 2.535585e-04	ci right 2.860210e-04	k: 1075	n:3990000
THSD7B   3990000 perm   6450 sec   (619 perm/sec)   p_kst 2.694236e-04   p_cons 4.144444e-01   p_joint 2.694236e-04

Joint ci ratio: 1.192657e-01	ci left: 2.538948e-04	ci right 2.863358e-04	k: 1079	n:4000000
Cons ci ratio: 2.329648e-03	ci left: 4.139799e-01	ci right 4.149457e-01	k: 1657851	n:4000000
KS ci ratio: 1.192657e-01	ci left: 2.538948e-04	ci right 2.863358e-04	k: 1079	n:4000000
THSD7B   4000000 perm   6481 sec   (617 perm/sec)   p_kst 2.697500e-04   p_cons 4.144627e-01   p_joint 2.697500e-04

Joint ci ratio: 1.191554e-01	ci left: 2.537455e-04	ci right 2.861354e-04	k: 1081	n:4010000
Cons ci ratio: 2.326688e-03	ci left: 4.139918e-01	ci right 4.149564e-01	k: 1662041	n:4010000
KS ci ratio: 1.191554e-01	ci left: 2.537455e-04	ci right 2.861354e-04	k: 1081	n:4010000
THSD7B   4010000 perm   6511 sec   (616 perm/sec)   p_kst 2.695761e-04   p_cons 4.144741e-01   p_joint 2.695761e-04

Joint ci ratio: 1.190455e-01	ci left: 2.535970e-04	ci right 2.859360e-04	k: 1083	n:4020000
Cons ci ratio: 2.323790e-03	ci left: 4.139927e-01	ci right 4.149561e-01	k: 1666187	n:4020000
KS ci ratio: 1.190455e-01	ci left: 2.535970e-04	ci right 2.859360e-04	k: 1083	n:4020000
THSD7B   4020000 perm   6541 sec   (615 perm/sec)   p_kst 2.694030e-04   p_cons 4.144744e-01   p_joint 2.694030e-04

Joint ci ratio: 1.187173e-01	ci left: 2.544123e-04	ci right 2.867595e-04	k: 1089	n:4030000
Cons ci ratio: 2.320829e-03	ci left: 4.140093e-01	ci right 4.149715e-01	k: 1670396	n:4030000
KS ci ratio: 1.187173e-01	ci left: 2.544123e-04	ci right 2.867595e-04	k: 1089	n:4030000
THSD7B   4030000 perm   6570 sec   (613 perm/sec)   p_kst 2.702233e-04   p_cons 4.144903e-01   p_joint 2.702233e-04

Joint ci ratio: 1.185001e-01	ci left: 2.547433e-04	ci right 2.870692e-04	k: 1093	n:4040000
Cons ci ratio: 2.317985e-03	ci left: 4.140037e-01	ci right 4.149647e-01	k: 1674516	n:4040000
KS ci ratio: 1.185001e-01	ci left: 2.547433e-04	ci right 2.870692e-04	k: 1093	n:4040000
THSD7B   4040000 perm   6601 sec   (612 perm/sec)   p_kst 2.705446e-04   p_cons 4.144842e-01   p_joint 2.705446e-04

Joint ci ratio: 1.182840e-01	ci left: 2.550727e-04	ci right 2.873772e-04	k: 1097	n:4050000
Cons ci ratio: 2.315024e-03	ci left: 4.140246e-01	ci right 4.149844e-01	k: 1678743	n:4050000
KS ci ratio: 1.182840e-01	ci left: 2.550727e-04	ci right 2.873772e-04	k: 1097	n:4050000
THSD7B   4050000 perm   6632 sec   (611 perm/sec)   p_kst 2.708642e-04   p_cons 4.145044e-01   p_joint 2.708642e-04

Joint ci ratio: 1.182302e-01	ci left: 2.546834e-04	ci right 2.869230e-04	k: 1098	n:4060000
Cons ci ratio: 2.312108e-03	ci left: 4.140385e-01	ci right 4.149971e-01	k: 1682942	n:4060000
KS ci ratio: 1.182302e-01	ci left: 2.546834e-04	ci right 2.869230e-04	k: 1098	n:4060000
THSD7B   4060000 perm   6662 sec   (609 perm/sec)   p_kst 2.704433e-04   p_cons 4.145177e-01   p_joint 2.704433e-04

Joint ci ratio: 1.181765e-01	ci left: 2.542961e-04	ci right 2.864710e-04	k: 1099	n:4070000
Cons ci ratio: 2.309308e-03	ci left: 4.140302e-01	ci right 4.149876e-01	k: 1687051	n:4070000
KS ci ratio: 1.181765e-01	ci left: 2.542961e-04	ci right 2.864710e-04	k: 1099	n:4070000
THSD7B   4070000 perm   6693 sec   (608 perm/sec)   p_kst 2.700246e-04   p_cons 4.145088e-01   p_joint 2.700246e-04

Joint ci ratio: 1.179088e-01	ci left: 2.548622e-04	ci right 2.870305e-04	k: 1104	n:4080000
Cons ci ratio: 2.306478e-03	ci left: 4.140305e-01	ci right 4.149868e-01	k: 1691195	n:4080000
KS ci ratio: 1.179088e-01	ci left: 2.548622e-04	ci right 2.870305e-04	k: 1104	n:4080000
THSD7B   4080000 perm   6724 sec   (607 perm/sec)   p_kst 2.705882e-04   p_cons 4.145086e-01   p_joint 2.705882e-04

Joint ci ratio: 1.178022e-01	ci left: 2.547136e-04	ci right 2.868321e-04	k: 1106	n:4090000
Cons ci ratio: 2.303689e-03	ci left: 4.140242e-01	ci right 4.149793e-01	k: 1695312	n:4090000
KS ci ratio: 1.178022e-01	ci left: 2.547136e-04	ci right 2.868321e-04	k: 1106	n:4090000
THSD7B   4090000 perm   6755 sec   (605 perm/sec)   p_kst 2.704156e-04   p_cons 4.145017e-01   p_joint 2.704156e-04

Joint ci ratio: 1.176959e-01	ci left: 2.545658e-04	ci right 2.866347e-04	k: 1108	n:4100000
Cons ci ratio: 2.300934e-03	ci left: 4.140131e-01	ci right 4.149670e-01	k: 1699409	n:4100000
KS ci ratio: 1.176959e-01	ci left: 2.545658e-04	ci right 2.866347e-04	k: 1108	n:4100000
THSD7B   4100000 perm   6786 sec   (604 perm/sec)   p_kst 2.702439e-04   p_cons 4.144900e-01   p_joint 2.702439e-04

Joint ci ratio: 1.174315e-01	ci left: 2.551272e-04	ci right 2.871896e-04	k: 1113	n:4110000
Cons ci ratio: 2.298123e-03	ci left: 4.140156e-01	ci right 4.149684e-01	k: 1703562	n:4110000
KS ci ratio: 1.174315e-01	ci left: 2.551272e-04	ci right 2.871896e-04	k: 1113	n:4110000
THSD7B   4110000 perm   6818 sec   (603 perm/sec)   p_kst 2.708029e-04   p_cons 4.144920e-01   p_joint 2.708029e-04

Joint ci ratio: 1.172737e-01	ci left: 2.552147e-04	ci right 2.872421e-04	k: 1116	n:4120000
Cons ci ratio: 2.295261e-03	ci left: 4.140313e-01	ci right 4.149829e-01	k: 1707769	n:4120000
KS ci ratio: 1.172737e-01	ci left: 2.552147e-04	ci right 2.872421e-04	k: 1116	n:4120000
THSD7B   4120000 perm   6849 sec   (602 perm/sec)   p_kst 2.708738e-04   p_cons 4.145070e-01   p_joint 2.708738e-04

Joint ci ratio: 1.172737e-01	ci left: 2.545968e-04	ci right 2.865466e-04	k: 1116	n:4130000
Cons ci ratio: 2.292447e-03	ci left: 4.140391e-01	ci right 4.149896e-01	k: 1711944	n:4130000
KS ci ratio: 1.172737e-01	ci left: 2.545968e-04	ci right 2.865466e-04	k: 1116	n:4130000
THSD7B   4130000 perm   6880 sec   (600 perm/sec)   p_kst 2.702179e-04   p_cons 4.145143e-01   p_joint 2.702179e-04

Joint ci ratio: 1.171689e-01	ci left: 2.544507e-04	ci right 2.863517e-04	k: 1118	n:4140000
Cons ci ratio: 2.289675e-03	ci left: 4.140399e-01	ci right 4.149892e-01	k: 1716090	n:4140000
KS ci ratio: 1.171689e-01	ci left: 2.544507e-04	ci right 2.863517e-04	k: 1118	n:4140000
THSD7B   4140000 perm   6912 sec   (599 perm/sec)   p_kst 2.700483e-04   p_cons 4.145145e-01   p_joint 2.700483e-04

Joint ci ratio: 1.170643e-01	ci left: 2.543054e-04	ci right 2.861577e-04	k: 1120	n:4150000
Cons ci ratio: 2.286795e-03	ci left: 4.140660e-01	ci right 4.150142e-01	k: 1720341	n:4150000
KS ci ratio: 1.170643e-01	ci left: 2.543054e-04	ci right 2.861577e-04	k: 1120	n:4150000
THSD7B   4150000 perm   6944 sec   (598 perm/sec)   p_kst 2.698795e-04   p_cons 4.145400e-01   p_joint 2.698795e-04

Joint ci ratio: 1.169080e-01	ci left: 2.543941e-04	ci right 2.862121e-04	k: 1123	n:4160000
Cons ci ratio: 2.284051e-03	ci left: 4.140652e-01	ci right 4.150123e-01	k: 1724481	n:4160000
KS ci ratio: 1.169080e-01	ci left: 2.543941e-04	ci right 2.862121e-04	k: 1123	n:4160000
THSD7B   4160000 perm   6976 sec   (596 perm/sec)   p_kst 2.699519e-04   p_cons 4.145387e-01   p_joint 2.699519e-04

Joint ci ratio: 1.168041e-01	ci left: 2.542497e-04	ci right 2.860193e-04	k: 1125	n:4170000
Cons ci ratio: 2.281355e-03	ci left: 4.140564e-01	ci right 4.150023e-01	k: 1728587	n:4170000
KS ci ratio: 1.168041e-01	ci left: 2.542497e-04	ci right 2.860193e-04	k: 1125	n:4170000
THSD7B   4170000 perm   7008 sec   (595 perm/sec)   p_kst 2.697842e-04   p_cons 4.145293e-01   p_joint 2.697842e-04

Joint ci ratio: 1.167523e-01	ci left: 2.538737e-04	ci right 2.855813e-04	k: 1126	n:4180000
Cons ci ratio: 2.278609e-03	ci left: 4.140602e-01	ci right 4.150050e-01	k: 1732746	n:4180000
KS ci ratio: 1.167523e-01	ci left: 2.538737e-04	ci right 2.855813e-04	k: 1126	n:4180000
THSD7B   4180000 perm   7040 sec   (594 perm/sec)   p_kst 2.693780e-04   p_cons 4.145325e-01   p_joint 2.693780e-04

Joint ci ratio: 1.165972e-01	ci left: 2.539629e-04	ci right 2.856366e-04	k: 1129	n:4190000
Cons ci ratio: 2.275889e-03	ci left: 4.140607e-01	ci right 4.150043e-01	k: 1736891	n:4190000
KS ci ratio: 1.165972e-01	ci left: 2.539629e-04	ci right 2.856366e-04	k: 1129	n:4190000
THSD7B   4190000 perm   7071 sec   (593 perm/sec)   p_kst 2.694511e-04   p_cons 4.145325e-01   p_joint 2.694511e-04

Joint ci ratio: 1.164428e-01	ci left: 2.540517e-04	ci right 2.856916e-04	k: 1132	n:4200000
Cons ci ratio: 2.273123e-03	ci left: 4.140728e-01	ci right 4.150154e-01	k: 1741085	n:4200000
KS ci ratio: 1.164428e-01	ci left: 2.540517e-04	ci right 2.856916e-04	k: 1132	n:4200000
THSD7B   4200000 perm   7103 sec   (591 perm/sec)   p_kst 2.695238e-04   p_cons 4.145440e-01   p_joint 2.695238e-04

Joint ci ratio: 1.161356e-01	ci left: 2.548319e-04	ci right 2.864796e-04	k: 1138	n:4210000
Cons ci ratio: 2.270519e-03	ci left: 4.140526e-01	ci right 4.149940e-01	k: 1745143	n:4210000
KS ci ratio: 1.161356e-01	ci left: 2.548319e-04	ci right 2.864796e-04	k: 1138	n:4210000
THSD7B   4210000 perm   7136 sec   (590 perm/sec)   p_kst 2.703088e-04   p_cons 4.145233e-01   p_joint 2.703088e-04

Joint ci ratio: 1.160847e-01	ci left: 2.544581e-04	ci right 2.860446e-04	k: 1139	n:4220000
Cons ci ratio: 2.267670e-03	ci left: 4.140868e-01	ci right 4.150271e-01	k: 1749430	n:4220000
KS ci ratio: 1.160847e-01	ci left: 2.544581e-04	ci right 2.860446e-04	k: 1139	n:4220000
THSD7B   4220000 perm   7168 sec   (589 perm/sec)   p_kst 2.699052e-04   p_cons 4.145569e-01   p_joint 2.699052e-04

Joint ci ratio: 1.159830e-01	ci left: 2.543157e-04	ci right 2.858549e-04	k: 1141	n:4230000
Cons ci ratio: 2.264969e-03	ci left: 4.140915e-01	ci right 4.150306e-01	k: 1753593	n:4230000
KS ci ratio: 1.159830e-01	ci left: 2.543157e-04	ci right 2.858549e-04	k: 1141	n:4230000
THSD7B   4230000 perm   7199 sec   (588 perm/sec)   p_kst 2.697400e-04   p_cons 4.145610e-01   p_joint 2.697400e-04

Joint ci ratio: 1.158816e-01	ci left: 2.541739e-04	ci right 2.856661e-04	k: 1143	n:4240000
Cons ci ratio: 2.262156e-03	ci left: 4.141223e-01	ci right 4.150604e-01	k: 1757867	n:4240000
KS ci ratio: 1.158816e-01	ci left: 2.541739e-04	ci right 2.856661e-04	k: 1143	n:4240000
THSD7B   4240000 perm   7231 sec   (586 perm/sec)   p_kst 2.695755e-04   p_cons 4.145913e-01   p_joint 2.695755e-04

Joint ci ratio: 1.157299e-01	ci left: 2.542613e-04	ci right 2.857203e-04	k: 1146	n:4250000
Cons ci ratio: 2.259502e-03	ci left: 4.141207e-01	ci right 4.150577e-01	k: 1762004	n:4250000
KS ci ratio: 1.157299e-01	ci left: 2.542613e-04	ci right 2.857203e-04	k: 1146	n:4250000
THSD7B   4250000 perm   7263 sec   (585 perm/sec)   p_kst 2.696471e-04   p_cons 4.145892e-01   p_joint 2.696471e-04

Joint ci ratio: 1.155789e-01	ci left: 2.543483e-04	ci right 2.857741e-04	k: 1149	n:4260000
Cons ci ratio: 2.256833e-03	ci left: 4.141246e-01	ci right 4.150605e-01	k: 1766164	n:4260000
KS ci ratio: 1.155789e-01	ci left: 2.543483e-04	ci right 2.857741e-04	k: 1149	n:4260000
THSD7B   4260000 perm   7294 sec   (584 perm/sec)   p_kst 2.697183e-04   p_cons 4.145925e-01   p_joint 2.697183e-04

Joint ci ratio: 1.154785e-01	ci left: 2.542075e-04	ci right 2.855868e-04	k: 1151	n:4270000
Cons ci ratio: 2.254237e-03	ci left: 4.141149e-01	ci right 4.150497e-01	k: 1770266	n:4270000
KS ci ratio: 1.154785e-01	ci left: 2.542075e-04	ci right 2.855868e-04	k: 1151	n:4270000
THSD7B   4270000 perm   7326 sec   (583 perm/sec)   p_kst 2.695550e-04   p_cons 4.145822e-01   p_joint 2.695550e-04

Joint ci ratio: 1.153784e-01	ci left: 2.540673e-04	ci right 2.854003e-04	k: 1153	n:4280000
Cons ci ratio: 2.251595e-03	ci left: 4.141169e-01	ci right 4.150505e-01	k: 1774418	n:4280000
KS ci ratio: 1.153784e-01	ci left: 2.540673e-04	ci right 2.854003e-04	k: 1153	n:4280000
THSD7B   4280000 perm   7358 sec   (582 perm/sec)   p_kst 2.693925e-04   p_cons 4.145836e-01   p_joint 2.693925e-04

Joint ci ratio: 1.153285e-01	ci left: 2.537015e-04	ci right 2.849749e-04	k: 1154	n:4290000
Cons ci ratio: 2.248964e-03	ci left: 4.141186e-01	ci right 4.150512e-01	k: 1778569	n:4290000
KS ci ratio: 1.153285e-01	ci left: 2.537015e-04	ci right 2.849749e-04	k: 1154	n:4290000
THSD7B   4290000 perm   7391 sec   (580 perm/sec)   p_kst 2.689977e-04   p_cons 4.145848e-01   p_joint 2.689977e-04

Joint ci ratio: 1.152786e-01	ci left: 2.533373e-04	ci right 2.845514e-04	k: 1155	n:4300000
Cons ci ratio: 2.246366e-03	ci left: 4.141152e-01	ci right 4.150467e-01	k: 1782698	n:4300000
KS ci ratio: 1.152786e-01	ci left: 2.533373e-04	ci right 2.845514e-04	k: 1155	n:4300000
THSD7B   4300000 perm   7424 sec   (579 perm/sec)   p_kst 2.686047e-04   p_cons 4.145809e-01   p_joint 2.686047e-04

Joint ci ratio: 1.151790e-01	ci left: 2.532002e-04	ci right 2.843686e-04	k: 1157	n:4310000
Cons ci ratio: 2.243731e-03	ci left: 4.141216e-01	ci right 4.150521e-01	k: 1786869	n:4310000
KS ci ratio: 1.151790e-01	ci left: 2.532002e-04	ci right 2.843686e-04	k: 1157	n:4310000
THSD7B   4310000 perm   7457 sec   (578 perm/sec)   p_kst 2.684455e-04   p_cons 4.145868e-01   p_joint 2.684455e-04

Joint ci ratio: 1.150301e-01	ci left: 2.532885e-04	ci right 2.844248e-04	k: 1160	n:4320000
Cons ci ratio: 2.241097e-03	ci left: 4.141298e-01	ci right 4.150592e-01	k: 1791048	n:4320000
KS ci ratio: 1.150301e-01	ci left: 2.532885e-04	ci right 2.844248e-04	k: 1160	n:4320000
THSD7B   4320000 perm   7490 sec   (577 perm/sec)   p_kst 2.685185e-04   p_cons 4.145944e-01   p_joint 2.685185e-04

Joint ci ratio: 1.149806e-01	ci left: 2.529279e-04	ci right 2.840055e-04	k: 1161	n:4330000
Cons ci ratio: 2.238556e-03	ci left: 4.141200e-01	ci right 4.150483e-01	k: 1795149	n:4330000
KS ci ratio: 1.149806e-01	ci left: 2.529279e-04	ci right 2.840055e-04	k: 1161	n:4330000
THSD7B   4330000 perm   7523 sec   (576 perm/sec)   p_kst 2.681293e-04   p_cons 4.145841e-01   p_joint 2.681293e-04

Joint ci ratio: 1.148818e-01	ci left: 2.527927e-04	ci right 2.838252e-04	k: 1163	n:4340000
Cons ci ratio: 2.236034e-03	ci left: 4.141077e-01	ci right 4.150349e-01	k: 1799239	n:4340000
KS ci ratio: 1.148818e-01	ci left: 2.527927e-04	ci right 2.838252e-04	k: 1163	n:4340000
THSD7B   4340000 perm   7555 sec   (574 perm/sec)   p_kst 2.679724e-04   p_cons 4.145712e-01   p_joint 2.679724e-04

Joint ci ratio: 1.148325e-01	ci left: 2.524348e-04	ci right 2.834092e-04	k: 1164	n:4350000
Cons ci ratio: 2.233472e-03	ci left: 4.141062e-01	ci right 4.150323e-01	k: 1803376	n:4350000
KS ci ratio: 1.148325e-01	ci left: 2.524348e-04	ci right 2.834092e-04	k: 1164	n:4350000
THSD7B   4350000 perm   7588 sec   (573 perm/sec)   p_kst 2.675862e-04   p_cons 4.145692e-01   p_joint 2.675862e-04

Joint ci ratio: 1.146359e-01	ci left: 2.527469e-04	ci right 2.837029e-04	k: 1168	n:4360000
Cons ci ratio: 2.230960e-03	ci left: 4.140958e-01	ci right 4.150209e-01	k: 1807474	n:4360000
KS ci ratio: 1.146359e-01	ci left: 2.527469e-04	ci right 2.837029e-04	k: 1168	n:4360000
THSD7B   4360000 perm   7621 sec   (572 perm/sec)   p_kst 2.678899e-04   p_cons 4.145583e-01   p_joint 2.678899e-04

Joint ci ratio: 1.145379e-01	ci left: 2.526131e-04	ci right 2.835245e-04	k: 1170	n:4370000
Cons ci ratio: 2.228428e-03	ci left: 4.140914e-01	ci right 4.150154e-01	k: 1811598	n:4370000
KS ci ratio: 1.145379e-01	ci left: 2.526131e-04	ci right 2.835245e-04	k: 1170	n:4370000
THSD7B   4370000 perm   7653 sec   (571 perm/sec)   p_kst 2.677346e-04   p_cons 4.145533e-01   p_joint 2.677346e-04

Joint ci ratio: 1.144403e-01	ci left: 2.524799e-04	ci right 2.833469e-04	k: 1172	n:4380000
Cons ci ratio: 2.225867e-03	ci left: 4.140954e-01	ci right 4.150184e-01	k: 1815759	n:4380000
KS ci ratio: 1.144403e-01	ci left: 2.524799e-04	ci right 2.833469e-04	k: 1172	n:4380000
THSD7B   4380000 perm   7686 sec   (570 perm/sec)   p_kst 2.675799e-04   p_cons 4.145568e-01   p_joint 2.675799e-04

Joint ci ratio: 1.142456e-01	ci left: 2.527899e-04	ci right 2.836386e-04	k: 1176	n:4390000
Cons ci ratio: 2.223338e-03	ci left: 4.140942e-01	ci right 4.150161e-01	k: 1819897	n:4390000
KS ci ratio: 1.142456e-01	ci left: 2.527899e-04	ci right 2.836386e-04	k: 1176	n:4390000
THSD7B   4390000 perm   7720 sec   (569 perm/sec)   p_kst 2.678815e-04   p_cons 4.145551e-01   p_joint 2.678815e-04

Joint ci ratio: 1.139073e-01	ci left: 2.537609e-04	ci right 2.846303e-04	k: 1183	n:4400000
Cons ci ratio: 2.220817e-03	ci left: 4.140933e-01	ci right 4.150141e-01	k: 1824036	n:4400000
KS ci ratio: 1.139073e-01	ci left: 2.537609e-04	ci right 2.846303e-04	k: 1183	n:4400000
THSD7B   4400000 perm   7753 sec   (568 perm/sec)   p_kst 2.688636e-04   p_cons 4.145536e-01   p_joint 2.688636e-04

Joint ci ratio: 1.138113e-01	ci left: 2.536261e-04	ci right 2.844513e-04	k: 1185	n:4410000
Cons ci ratio: 2.218217e-03	ci left: 4.141113e-01	ci right 4.150312e-01	k: 1828259	n:4410000
KS ci ratio: 1.138113e-01	ci left: 2.536261e-04	ci right 2.844513e-04	k: 1185	n:4410000
THSD7B   4410000 perm   7787 sec   (566 perm/sec)   p_kst 2.687075e-04   p_cons 4.145712e-01   p_joint 2.687075e-04

Joint ci ratio: 1.136676e-01	ci left: 2.537117e-04	ci right 2.845058e-04	k: 1188	n:4420000
Cons ci ratio: 2.215713e-03	ci left: 4.141104e-01	ci right 4.150291e-01	k: 1832398	n:4420000
KS ci ratio: 1.136676e-01	ci left: 2.537117e-04	ci right 2.845058e-04	k: 1188	n:4420000
THSD7B   4420000 perm   7821 sec   (565 perm/sec)   p_kst 2.687783e-04   p_cons 4.145697e-01   p_joint 2.687783e-04

Joint ci ratio: 1.136676e-01	ci left: 2.531390e-04	ci right 2.838635e-04	k: 1188	n:4430000
Cons ci ratio: 2.213360e-03	ci left: 4.140782e-01	ci right 4.149959e-01	k: 1836399	n:4430000
KS ci ratio: 1.136676e-01	ci left: 2.531390e-04	ci right 2.838635e-04	k: 1188	n:4430000
THSD7B   4430000 perm   7854 sec   (564 perm/sec)   p_kst 2.681716e-04   p_cons 4.145370e-01   p_joint 2.681716e-04

Joint ci ratio: 1.136677e-01	ci left: 2.525688e-04	ci right 2.832242e-04	k: 1188	n:4440000
Cons ci ratio: 2.210806e-03	ci left: 4.140919e-01	ci right 4.150086e-01	k: 1840603	n:4440000
KS ci ratio: 1.136677e-01	ci left: 2.525688e-04	ci right 2.832242e-04	k: 1188	n:4440000
THSD7B   4440000 perm   7889 sec   (563 perm/sec)   p_kst 2.675676e-04   p_cons 4.145502e-01   p_joint 2.675676e-04

Joint ci ratio: 1.135245e-01	ci left: 2.526563e-04	ci right 2.832811e-04	k: 1191	n:4450000
Cons ci ratio: 2.208315e-03	ci left: 4.140937e-01	ci right 4.150094e-01	k: 1844754	n:4450000
KS ci ratio: 1.135245e-01	ci left: 2.526563e-04	ci right 2.832811e-04	k: 1191	n:4450000
THSD7B   4450000 perm   7922 sec   (562 perm/sec)   p_kst 2.676404e-04   p_cons 4.145515e-01   p_joint 2.676404e-04

Joint ci ratio: 1.134294e-01	ci left: 2.525255e-04	ci right 2.831071e-04	k: 1193	n:4460000
Cons ci ratio: 2.205850e-03	ci left: 4.140916e-01	ci right 4.150063e-01	k: 1848888	n:4460000
KS ci ratio: 1.134294e-01	ci left: 2.525255e-04	ci right 2.831071e-04	k: 1193	n:4460000
THSD7B   4460000 perm   7956 sec   (561 perm/sec)   p_kst 2.674888e-04   p_cons 4.145489e-01   p_joint 2.674888e-04

Joint ci ratio: 1.132399e-01	ci left: 2.528300e-04	ci right 2.833939e-04	k: 1197	n:4470000
Cons ci ratio: 2.203342e-03	ci left: 4.141007e-01	ci right 4.150144e-01	k: 1853072	n:4470000
KS ci ratio: 1.132399e-01	ci left: 2.528300e-04	ci right 2.833939e-04	k: 1197	n:4470000
THSD7B   4470000 perm   7990 sec   (559 perm/sec)   p_kst 2.677852e-04   p_cons 4.145575e-01   p_joint 2.677852e-04

Joint ci ratio: 1.130984e-01	ci left: 2.529164e-04	ci right 2.834499e-04	k: 1200	n:4480000
Cons ci ratio: 2.200892e-03	ci left: 4.140989e-01	ci right 4.150115e-01	k: 1857207	n:4480000
KS ci ratio: 1.130984e-01	ci left: 2.529164e-04	ci right 2.834499e-04	k: 1200	n:4480000
THSD7B   4480000 perm   8024 sec   (558 perm/sec)   p_kst 2.678571e-04   p_cons 4.145551e-01   p_joint 2.678571e-04

Joint ci ratio: 1.130513e-01	ci left: 2.525695e-04	ci right 2.830476e-04	k: 1201	n:4490000
Cons ci ratio: 2.198442e-03	ci left: 4.140988e-01	ci right 4.150104e-01	k: 1861350	n:4490000
KS ci ratio: 1.130513e-01	ci left: 2.525695e-04	ci right 2.830476e-04	k: 1201	n:4490000
THSD7B   4490000 perm   8058 sec   (557 perm/sec)   p_kst 2.674833e-04   p_cons 4.145546e-01   p_joint 2.674833e-04

Joint ci ratio: 1.129105e-01	ci left: 2.526560e-04	ci right 2.831042e-04	k: 1204	n:4500000
Cons ci ratio: 2.195991e-03	ci left: 4.141010e-01	ci right 4.150116e-01	k: 1865503	n:4500000
KS ci ratio: 1.129105e-01	ci left: 2.526560e-04	ci right 2.831042e-04	k: 1204	n:4500000
THSD7B   4500000 perm   8092 sec   (556 perm/sec)   p_kst 2.675556e-04   p_cons 4.145562e-01   p_joint 2.675556e-04

Joint ci ratio: 1.128169e-01	ci left: 2.525268e-04	ci right 2.829324e-04	k: 1206	n:4510000
Cons ci ratio: 2.193644e-03	ci left: 4.140819e-01	ci right 4.149914e-01	k: 1869560	n:4510000
KS ci ratio: 1.128169e-01	ci left: 2.525268e-04	ci right 2.829324e-04	k: 1206	n:4510000
THSD7B   4510000 perm   8125 sec   (555 perm/sec)   p_kst 2.674058e-04   p_cons 4.145366e-01   p_joint 2.674058e-04

Joint ci ratio: 1.126770e-01	ci left: 2.526131e-04	ci right 2.829889e-04	k: 1209	n:4520000
Cons ci ratio: 2.191216e-03	ci left: 4.140823e-01	ci right 4.149908e-01	k: 1873705	n:4520000
KS ci ratio: 1.126770e-01	ci left: 2.526131e-04	ci right 2.829889e-04	k: 1209	n:4520000
THSD7B   4520000 perm   8159 sec   (554 perm/sec)   p_kst 2.674779e-04   p_cons 4.145365e-01   p_joint 2.674779e-04

Joint ci ratio: 1.126770e-01	ci left: 2.520554e-04	ci right 2.823642e-04	k: 1209	n:4530000
Cons ci ratio: 2.188831e-03	ci left: 4.140750e-01	ci right 4.149825e-01	k: 1877815	n:4530000
KS ci ratio: 1.126770e-01	ci left: 2.520554e-04	ci right 2.823642e-04	k: 1209	n:4530000
THSD7B   4530000 perm   8194 sec   (553 perm/sec)   p_kst 2.668874e-04   p_cons 4.145287e-01   p_joint 2.668874e-04

Joint ci ratio: 1.126305e-01	ci left: 2.517143e-04	ci right 2.819687e-04	k: 1210	n:4540000
Cons ci ratio: 2.186456e-03	ci left: 4.140673e-01	ci right 4.149738e-01	k: 1881923	n:4540000
KS ci ratio: 1.126305e-01	ci left: 2.517143e-04	ci right 2.819687e-04	k: 1210	n:4540000
THSD7B   4540000 perm   8228 sec   (552 perm/sec)   p_kst 2.665198e-04   p_cons 4.145205e-01   p_joint 2.665198e-04

Joint ci ratio: 1.124912e-01	ci left: 2.518019e-04	ci right 2.820269e-04	k: 1213	n:4550000
Cons ci ratio: 2.184046e-03	ci left: 4.140693e-01	ci right 4.149748e-01	k: 1886075	n:4550000
KS ci ratio: 1.124912e-01	ci left: 2.518019e-04	ci right 2.820269e-04	k: 1213	n:4550000
THSD7B   4550000 perm   8262 sec   (551 perm/sec)   p_kst 2.665934e-04   p_cons 4.145220e-01   p_joint 2.665934e-04

Joint ci ratio: 1.124913e-01	ci left: 2.512497e-04	ci right 2.814084e-04	k: 1213	n:4560000
Cons ci ratio: 2.181659e-03	ci left: 4.140677e-01	ci right 4.149723e-01	k: 1890211	n:4560000
KS ci ratio: 1.124913e-01	ci left: 2.512497e-04	ci right 2.814084e-04	k: 1213	n:4560000
THSD7B   4560000 perm   8297 sec   (550 perm/sec)   p_kst 2.660088e-04   p_cons 4.145200e-01   p_joint 2.660088e-04

Joint ci ratio: 1.123064e-01	ci left: 2.515505e-04	ci right 2.816925e-04	k: 1217	n:4570000
Cons ci ratio: 2.179259e-03	ci left: 4.140708e-01	ci right 4.149744e-01	k: 1894368	n:4570000
KS ci ratio: 1.123064e-01	ci left: 2.515505e-04	ci right 2.816925e-04	k: 1217	n:4570000
THSD7B   4570000 perm   8330 sec   (549 perm/sec)   p_kst 2.663020e-04   p_cons 4.145225e-01   p_joint 2.663020e-04

Joint ci ratio: 1.121224e-01	ci left: 2.518502e-04	ci right 2.819753e-04	k: 1221	n:4580000
Cons ci ratio: 2.176967e-03	ci left: 4.140516e-01	ci right 4.149542e-01	k: 1898423	n:4580000
KS ci ratio: 1.121224e-01	ci left: 2.518502e-04	ci right 2.819753e-04	k: 1221	n:4580000
THSD7B   4580000 perm   8364 sec   (548 perm/sec)   p_kst 2.665939e-04   p_cons 4.145028e-01   p_joint 2.665939e-04

Joint ci ratio: 1.120308e-01	ci left: 2.517250e-04	ci right 2.818089e-04	k: 1223	n:4590000
Cons ci ratio: 2.174599e-03	ci left: 4.140510e-01	ci right 4.149526e-01	k: 1902563	n:4590000
KS ci ratio: 1.120308e-01	ci left: 2.517250e-04	ci right 2.818089e-04	k: 1223	n:4590000
THSD7B   4590000 perm   8399 sec   (547 perm/sec)   p_kst 2.664488e-04   p_cons 4.145017e-01   p_joint 2.664488e-04

Joint ci ratio: 1.118482e-01	ci left: 2.520230e-04	ci right 2.820902e-04	k: 1227	n:4600000
Cons ci ratio: 2.172355e-03	ci left: 4.140245e-01	ci right 4.149251e-01	k: 1906584	n:4600000
KS ci ratio: 1.118482e-01	ci left: 2.520230e-04	ci right 2.820902e-04	k: 1227	n:4600000
THSD7B   4600000 perm   8433 sec   (545 perm/sec)   p_kst 2.667391e-04   p_cons 4.144748e-01   p_joint 2.667391e-04

Joint ci ratio: 1.116211e-01	ci left: 2.525306e-04	ci right 2.825932e-04	k: 1232	n:4610000
Cons ci ratio: 2.169951e-03	ci left: 4.140353e-01	ci right 4.149349e-01	k: 1910776	n:4610000
KS ci ratio: 1.116211e-01	ci left: 2.525306e-04	ci right 2.825932e-04	k: 1232	n:4610000
THSD7B   4610000 perm   8468 sec   (544 perm/sec)   p_kst 2.672451e-04   p_cons 4.144850e-01   p_joint 2.672451e-04

Joint ci ratio: 1.114856e-01	ci left: 2.526152e-04	ci right 2.826490e-04	k: 1235	n:4620000
Cons ci ratio: 2.167648e-03	ci left: 4.140254e-01	ci right 4.149240e-01	k: 1914873	n:4620000
KS ci ratio: 1.114856e-01	ci left: 2.526152e-04	ci right 2.826490e-04	k: 1235	n:4620000
THSD7B   4620000 perm   8503 sec   (543 perm/sec)   p_kst 2.673160e-04   p_cons 4.144747e-01   p_joint 2.673160e-04

Joint ci ratio: 1.112607e-01	ci left: 2.531194e-04	ci right 2.831485e-04	k: 1240	n:4630000
Cons ci ratio: 2.165290e-03	ci left: 4.140294e-01	ci right 4.149271e-01	k: 1919034	n:4630000
KS ci ratio: 1.112607e-01	ci left: 2.531194e-04	ci right 2.831485e-04	k: 1240	n:4630000
THSD7B   4630000 perm   8538 sec   (542 perm/sec)   p_kst 2.678186e-04   p_cons 4.144782e-01   p_joint 2.678186e-04

Joint ci ratio: 1.111265e-01	ci left: 2.532025e-04	ci right 2.832028e-04	k: 1243	n:4640000
Cons ci ratio: 2.162924e-03	ci left: 4.140370e-01	ci right 4.149337e-01	k: 1923212	n:4640000
KS ci ratio: 1.111265e-01	ci left: 2.532025e-04	ci right 2.832028e-04	k: 1243	n:4640000
THSD7B   4640000 perm   8573 sec   (541 perm/sec)   p_kst 2.678879e-04   p_cons 4.144853e-01   p_joint 2.678879e-04

Joint ci ratio: 1.110819e-01	ci left: 2.528671e-04	ci right 2.828148e-04	k: 1244	n:4650000
Cons ci ratio: 2.160565e-03	ci left: 4.140447e-01	ci right 4.149404e-01	k: 1927390	n:4650000
KS ci ratio: 1.110819e-01	ci left: 2.528671e-04	ci right 2.828148e-04	k: 1244	n:4650000
THSD7B   4650000 perm   8608 sec   (540 perm/sec)   p_kst 2.675269e-04   p_cons 4.144925e-01   p_joint 2.675269e-04

Joint ci ratio: 1.108595e-01	ci left: 2.533676e-04	ci right 2.833106e-04	k: 1249	n:4660000
Cons ci ratio: 2.158282e-03	ci left: 4.140370e-01	ci right 4.149318e-01	k: 1931497	n:4660000
KS ci ratio: 1.108595e-01	ci left: 2.533676e-04	ci right 2.833106e-04	k: 1249	n:4660000
THSD7B   4660000 perm   8642 sec   (539 perm/sec)   p_kst 2.680258e-04   p_cons 4.144843e-01   p_joint 2.680258e-04

Joint ci ratio: 1.107709e-01	ci left: 2.532415e-04	ci right 2.831441e-04	k: 1251	n:4670000
Cons ci ratio: 2.156066e-03	ci left: 4.140159e-01	ci right 4.149097e-01	k: 1935541	n:4670000
KS ci ratio: 1.107709e-01	ci left: 2.532415e-04	ci right 2.831441e-04	k: 1251	n:4670000
THSD7B   4670000 perm   8677 sec   (538 perm/sec)   p_kst 2.678801e-04   p_cons 4.144627e-01   p_joint 2.678801e-04

Joint ci ratio: 1.107709e-01	ci left: 2.527003e-04	ci right 2.825391e-04	k: 1251	n:4680000
Cons ci ratio: 2.153769e-03	ci left: 4.140145e-01	ci right 4.149074e-01	k: 1939677	n:4680000
KS ci ratio: 1.107709e-01	ci left: 2.527003e-04	ci right 2.825391e-04	k: 1251	n:4680000
THSD7B   4680000 perm   8711 sec   (537 perm/sec)   p_kst 2.673077e-04   p_cons 4.144609e-01   p_joint 2.673077e-04

Joint ci ratio: 1.105944e-01	ci left: 2.529908e-04	ci right 2.828131e-04	k: 1255	n:4690000
Cons ci ratio: 2.151415e-03	ci left: 4.140279e-01	ci right 4.149198e-01	k: 1943882	n:4690000
KS ci ratio: 1.105944e-01	ci left: 2.529908e-04	ci right 2.828131e-04	k: 1255	n:4690000
THSD7B   4690000 perm   8746 sec   (536 perm/sec)   p_kst 2.675906e-04   p_cons 4.144738e-01   p_joint 2.675906e-04

Joint ci ratio: 1.104625e-01	ci left: 2.530732e-04	ci right 2.828673e-04	k: 1258	n:4700000
Cons ci ratio: 2.149145e-03	ci left: 4.140237e-01	ci right 4.149147e-01	k: 1948005	n:4700000
KS ci ratio: 1.104625e-01	ci left: 2.530732e-04	ci right 2.828673e-04	k: 1258	n:4700000
THSD7B   4700000 perm   8782 sec   (535 perm/sec)   p_kst 2.676596e-04   p_cons 4.144691e-01   p_joint 2.676596e-04

Joint ci ratio: 1.103312e-01	ci left: 2.531552e-04	ci right 2.829213e-04	k: 1261	n:4710000
Cons ci ratio: 2.146930e-03	ci left: 4.140090e-01	ci right 4.148990e-01	k: 1952078	n:4710000
KS ci ratio: 1.103312e-01	ci left: 2.531552e-04	ci right 2.829213e-04	k: 1261	n:4710000
THSD7B   4710000 perm   8818 sec   (534 perm/sec)   p_kst 2.677282e-04   p_cons 4.144539e-01   p_joint 2.677282e-04

Joint ci ratio: 1.102002e-01	ci left: 2.532369e-04	ci right 2.829750e-04	k: 1264	n:4720000
Cons ci ratio: 2.144601e-03	ci left: 4.140216e-01	ci right 4.149107e-01	k: 1956280	n:4720000
KS ci ratio: 1.102002e-01	ci left: 2.532369e-04	ci right 2.829750e-04	k: 1264	n:4720000
THSD7B   4720000 perm   8853 sec   (533 perm/sec)   p_kst 2.677966e-04   p_cons 4.144661e-01   p_joint 2.677966e-04

Joint ci ratio: 1.099831e-01	ci left: 2.537295e-04	ci right 2.834629e-04	k: 1269	n:4730000
Cons ci ratio: 2.142314e-03	ci left: 4.140262e-01	ci right 4.149143e-01	k: 1960444	n:4730000
KS ci ratio: 1.099831e-01	ci left: 2.537295e-04	ci right 2.834629e-04	k: 1269	n:4730000
THSD7B   4730000 perm   8889 sec   (532 perm/sec)   p_kst 2.682875e-04   p_cons 4.144702e-01   p_joint 2.682875e-04

Joint ci ratio: 1.098966e-01	ci left: 2.536046e-04	ci right 2.832984e-04	k: 1271	n:4740000
Cons ci ratio: 2.140057e-03	ci left: 4.140259e-01	ci right 4.149131e-01	k: 1964585	n:4740000
KS ci ratio: 1.098966e-01	ci left: 2.536046e-04	ci right 2.832984e-04	k: 1271	n:4740000
THSD7B   4740000 perm   8925 sec   (531 perm/sec)   p_kst 2.681435e-04   p_cons 4.144694e-01   p_joint 2.681435e-04

Joint ci ratio: 1.098103e-01	ci left: 2.534802e-04	ci right 2.831346e-04	k: 1273	n:4750000
Cons ci ratio: 2.137774e-03	ci left: 4.140329e-01	ci right 4.149192e-01	k: 1968761	n:4750000
KS ci ratio: 1.098103e-01	ci left: 2.534802e-04	ci right 2.831346e-04	k: 1273	n:4750000
THSD7B   4750000 perm   8960 sec   (530 perm/sec)   p_kst 2.680000e-04   p_cons 4.144760e-01   p_joint 2.680000e-04

Joint ci ratio: 1.095954e-01	ci left: 2.539692e-04	ci right 2.836190e-04	k: 1278	n:4760000
Cons ci ratio: 2.135471e-03	ci left: 4.140460e-01	ci right 4.149314e-01	k: 1972966	n:4760000
KS ci ratio: 1.095954e-01	ci left: 2.539692e-04	ci right 2.836190e-04	k: 1278	n:4760000
THSD7B   4760000 perm   8996 sec   (529 perm/sec)   p_kst 2.684874e-04   p_cons 4.144887e-01   p_joint 2.684874e-04

Joint ci ratio: 1.094671e-01	ci left: 2.540485e-04	ci right 2.836706e-04	k: 1281	n:4770000
Cons ci ratio: 2.133213e-03	ci left: 4.140507e-01	ci right 4.149351e-01	k: 1977131	n:4770000
KS ci ratio: 1.094671e-01	ci left: 2.540485e-04	ci right 2.836706e-04	k: 1281	n:4770000
THSD7B   4770000 perm   9032 sec   (528 perm/sec)   p_kst 2.685535e-04   p_cons 4.144929e-01   p_joint 2.685535e-04

Joint ci ratio: 1.092967e-01	ci left: 2.543310e-04	ci right 2.839368e-04	k: 1285	n:4780000
Cons ci ratio: 2.130996e-03	ci left: 4.140476e-01	ci right 4.149311e-01	k: 1981259	n:4780000
KS ci ratio: 1.092967e-01	ci left: 2.543310e-04	ci right 2.839368e-04	k: 1285	n:4780000
THSD7B   4780000 perm   9068 sec   (527 perm/sec)   p_kst 2.688285e-04   p_cons 4.144893e-01   p_joint 2.688285e-04

Joint ci ratio: 1.091694e-01	ci left: 2.544092e-04	ci right 2.839875e-04	k: 1288	n:4790000
Cons ci ratio: 2.128725e-03	ci left: 4.140586e-01	ci right 4.149411e-01	k: 1985454	n:4790000
KS ci ratio: 1.091694e-01	ci left: 2.544092e-04	ci right 2.839875e-04	k: 1288	n:4790000
THSD7B   4790000 perm   9103 sec   (526 perm/sec)   p_kst 2.688935e-04   p_cons 4.144998e-01   p_joint 2.688935e-04

Joint ci ratio: 1.090849e-01	ci left: 2.542845e-04	ci right 2.838239e-04	k: 1290	n:4800000
Cons ci ratio: 2.126405e-03	ci left: 4.140822e-01	ci right 4.149638e-01	k: 1989710	n:4800000
KS ci ratio: 1.090849e-01	ci left: 2.542845e-04	ci right 2.838239e-04	k: 1290	n:4800000
THSD7B   4800000 perm   9140 sec   (525 perm/sec)   p_kst 2.687500e-04   p_cons 4.145229e-01   p_joint 2.687500e-04

Joint ci ratio: 1.089583e-01	ci left: 2.543625e-04	ci right 2.838745e-04	k: 1293	n:4810000
Cons ci ratio: 2.124181e-03	ci left: 4.140855e-01	ci right 4.149662e-01	k: 1993869	n:4810000
KS ci ratio: 1.089583e-01	ci left: 2.543625e-04	ci right 2.838745e-04	k: 1293	n:4810000
THSD7B   4810000 perm   9175 sec   (524 perm/sec)   p_kst 2.688150e-04   p_cons 4.145258e-01   p_joint 2.688150e-04

Joint ci ratio: 1.088742e-01	ci left: 2.542384e-04	ci right 2.837118e-04	k: 1295	n:4820000
Cons ci ratio: 2.121945e-03	ci left: 4.140931e-01	ci right 4.149729e-01	k: 1998049	n:4820000
KS ci ratio: 1.088742e-01	ci left: 2.542384e-04	ci right 2.837118e-04	k: 1295	n:4820000
THSD7B   4820000 perm   9211 sec   (523 perm/sec)   p_kst 2.686722e-04   p_cons 4.145330e-01   p_joint 2.686722e-04

Joint ci ratio: 1.088323e-01	ci left: 2.539134e-04	ci right 2.833371e-04	k: 1296	n:4830000
Cons ci ratio: 2.119798e-03	ci left: 4.140819e-01	ci right 4.149608e-01	k: 2002138	n:4830000
KS ci ratio: 1.088323e-01	ci left: 2.539134e-04	ci right 2.833371e-04	k: 1296	n:4830000
THSD7B   4830000 perm   9248 sec   (522 perm/sec)   p_kst 2.683230e-04   p_cons 4.145213e-01   p_joint 2.683230e-04

Joint ci ratio: 1.087485e-01	ci left: 2.537908e-04	ci right 2.831761e-04	k: 1298	n:4840000
Cons ci ratio: 2.117541e-03	ci left: 4.140974e-01	ci right 4.149754e-01	k: 2006356	n:4840000
KS ci ratio: 1.087485e-01	ci left: 2.537908e-04	ci right 2.831761e-04	k: 1298	n:4840000
THSD7B   4840000 perm   9285 sec   (521 perm/sec)   p_kst 2.681818e-04   p_cons 4.145364e-01   p_joint 2.681818e-04

Joint ci ratio: 1.087067e-01	ci left: 2.534681e-04	ci right 2.828040e-04	k: 1299	n:4850000
Cons ci ratio: 2.115331e-03	ci left: 4.141038e-01	ci right 4.149809e-01	k: 2010530	n:4850000
KS ci ratio: 1.087067e-01	ci left: 2.534681e-04	ci right 2.828040e-04	k: 1299	n:4850000
THSD7B   4850000 perm   9321 sec   (520 perm/sec)   p_kst 2.678351e-04   p_cons 4.145423e-01   p_joint 2.678351e-04

Joint ci ratio: 1.086231e-01	ci left: 2.533469e-04	ci right 2.826448e-04	k: 1301	n:4860000
Cons ci ratio: 2.113113e-03	ci left: 4.141136e-01	ci right 4.149898e-01	k: 2014721	n:4860000
KS ci ratio: 1.086231e-01	ci left: 2.533469e-04	ci right 2.826448e-04	k: 1301	n:4860000
THSD7B   4860000 perm   9358 sec   (519 perm/sec)   p_kst 2.676955e-04   p_cons 4.145516e-01   p_joint 2.676955e-04

Joint ci ratio: 1.084982e-01	ci left: 2.534260e-04	ci right 2.826972e-04	k: 1304	n:4870000
Cons ci ratio: 2.110921e-03	ci left: 4.141189e-01	ci right 4.149942e-01	k: 2018890	n:4870000
KS ci ratio: 1.084982e-01	ci left: 2.534260e-04	ci right 2.826972e-04	k: 1304	n:4870000
THSD7B   4870000 perm   9395 sec   (518 perm/sec)   p_kst 2.677618e-04   p_cons 4.145565e-01   p_joint 2.677618e-04

Joint ci ratio: 1.083323e-01	ci left: 2.537041e-04	ci right 2.829598e-04	k: 1308	n:4880000
Cons ci ratio: 2.108745e-03	ci left: 4.141223e-01	ci right 4.149967e-01	k: 2023050	n:4880000
KS ci ratio: 1.083323e-01	ci left: 2.537041e-04	ci right 2.829598e-04	k: 1308	n:4880000
THSD7B   4880000 perm   9432 sec   (517 perm/sec)   p_kst 2.680328e-04   p_cons 4.145594e-01   p_joint 2.680328e-04

Joint ci ratio: 1.082910e-01	ci left: 2.533842e-04	ci right 2.825912e-04	k: 1309	n:4890000
Cons ci ratio: 2.106597e-03	ci left: 4.141206e-01	ci right 4.149941e-01	k: 2027185	n:4890000
KS ci ratio: 1.082910e-01	ci left: 2.533842e-04	ci right 2.825912e-04	k: 1309	n:4890000
THSD7B   4890000 perm   9469 sec   (516 perm/sec)   p_kst 2.676892e-04   p_cons 4.145573e-01   p_joint 2.676892e-04

Joint ci ratio: 1.082084e-01	ci left: 2.532642e-04	ci right 2.824337e-04	k: 1311	n:4900000
Cons ci ratio: 2.104433e-03	ci left: 4.141240e-01	ci right 4.149966e-01	k: 2031345	n:4900000
KS ci ratio: 1.082084e-01	ci left: 2.532642e-04	ci right 2.824337e-04	k: 1311	n:4900000
THSD7B   4900000 perm   9507 sec   (515 perm/sec)   p_kst 2.675510e-04   p_cons 4.145602e-01   p_joint 2.675510e-04

Joint ci ratio: 1.081672e-01	ci left: 2.529466e-04	ci right 2.820676e-04	k: 1312	n:4910000
Cons ci ratio: 2.102318e-03	ci left: 4.141178e-01	ci right 4.149895e-01	k: 2035458	n:4910000
KS ci ratio: 1.081672e-01	ci left: 2.529466e-04	ci right 2.820676e-04	k: 1312	n:4910000
THSD7B   4910000 perm   9544 sec   (514 perm/sec)   p_kst 2.672098e-04   p_cons 4.145536e-01   p_joint 2.672098e-04

Joint ci ratio: 1.080849e-01	ci left: 2.528280e-04	ci right 2.819118e-04	k: 1314	n:4920000
Cons ci ratio: 2.100246e-03	ci left: 4.141031e-01	ci right 4.149739e-01	k: 2039529	n:4920000
KS ci ratio: 1.080849e-01	ci left: 2.528280e-04	ci right 2.819118e-04	k: 1314	n:4920000
THSD7B   4920000 perm   9581 sec   (514 perm/sec)   p_kst 2.670732e-04   p_cons 4.145384e-01   p_joint 2.670732e-04

Joint ci ratio: 1.080849e-01	ci left: 2.523151e-04	ci right 2.813400e-04	k: 1314	n:4930000
Cons ci ratio: 2.098096e-03	ci left: 4.141079e-01	ci right 4.149778e-01	k: 2043696	n:4930000
KS ci ratio: 1.080849e-01	ci left: 2.523151e-04	ci right 2.813400e-04	k: 1314	n:4930000
THSD7B   4930000 perm   9618 sec   (513 perm/sec)   p_kst 2.665314e-04   p_cons 4.145428e-01   p_joint 2.665314e-04

Joint ci ratio: 1.080029e-01	ci left: 2.521983e-04	ci right 2.811863e-04	k: 1316	n:4940000
Cons ci ratio: 2.095976e-03	ci left: 4.141072e-01	ci right 4.149763e-01	k: 2047836	n:4940000
KS ci ratio: 1.080029e-01	ci left: 2.521983e-04	ci right 2.811863e-04	k: 1316	n:4940000
THSD7B   4940000 perm   9655 sec   (512 perm/sec)   p_kst 2.663968e-04   p_cons 4.145417e-01   p_joint 2.663968e-04

Joint ci ratio: 1.078392e-01	ci left: 2.524751e-04	ci right 2.814481e-04	k: 1320	n:4950000
Cons ci ratio: 2.093897e-03	ci left: 4.140985e-01	ci right 4.149667e-01	k: 2051936	n:4950000
KS ci ratio: 1.078392e-01	ci left: 2.524751e-04	ci right 2.814481e-04	k: 1320	n:4950000
THSD7B   4950000 perm   9693 sec   (511 perm/sec)   p_kst 2.666667e-04   p_cons 4.145325e-01   p_joint 2.666667e-04

Joint ci ratio: 1.076763e-01	ci left: 2.527508e-04	ci right 2.817088e-04	k: 1324	n:4960000
Cons ci ratio: 2.091699e-03	ci left: 4.141190e-01	ci right 4.149863e-01	k: 2056181	n:4960000
KS ci ratio: 1.076763e-01	ci left: 2.527508e-04	ci right 2.817088e-04	k: 1324	n:4960000
THSD7B   4960000 perm   9730 sec   (510 perm/sec)   p_kst 2.669355e-04   p_cons 4.145526e-01   p_joint 2.669355e-04

Joint ci ratio: 1.075141e-01	ci left: 2.530254e-04	ci right 2.819685e-04	k: 1328	n:4970000
Cons ci ratio: 2.089591e-03	ci left: 4.141202e-01	ci right 4.149866e-01	k: 2060330	n:4970000
KS ci ratio: 1.075141e-01	ci left: 2.530254e-04	ci right 2.819685e-04	k: 1328	n:4970000
THSD7B   4970000 perm   9768 sec   (509 perm/sec)   p_kst 2.672032e-04   p_cons 4.145533e-01   p_joint 2.672032e-04

Joint ci ratio: 1.074333e-01	ci left: 2.529081e-04	ci right 2.818147e-04	k: 1330	n:4980000
Cons ci ratio: 2.087457e-03	ci left: 4.141285e-01	ci right 4.149941e-01	k: 2064515	n:4980000
KS ci ratio: 1.074333e-01	ci left: 2.529081e-04	ci right 2.818147e-04	k: 1330	n:4980000
THSD7B   4980000 perm   9806 sec   (508 perm/sec)   p_kst 2.670683e-04   p_cons 4.145612e-01   p_joint 2.670683e-04

Joint ci ratio: 1.072722e-01	ci left: 2.531814e-04	ci right 2.820730e-04	k: 1334	n:4990000
Cons ci ratio: 2.085331e-03	ci left: 4.141368e-01	ci right 4.150015e-01	k: 2068700	n:4990000
KS ci ratio: 1.072722e-01	ci left: 2.531814e-04	ci right 2.820730e-04	k: 1334	n:4990000
THSD7B   4990000 perm   9843 sec   (507 perm/sec)   p_kst 2.673347e-04   p_cons 4.145691e-01   p_joint 2.673347e-04

Joint ci ratio: 1.071519e-01	ci left: 2.532589e-04	ci right 2.821250e-04	k: 1337	n:5000000
Cons ci ratio: 2.083275e-03	ci left: 4.141301e-01	ci right 4.149940e-01	k: 2072810	n:5000000
KS ci ratio: 1.071519e-01	ci left: 2.532589e-04	ci right 2.821250e-04	k: 1337	n:5000000
THSD7B   5000000 perm   9881 sec   (506 perm/sec)   p_kst 2.674000e-04   p_cons 4.145620e-01   p_joint 2.674000e-04

Outputting figure to mutsig2_images.part000000000174/THSD7B.2_4841_5000000_0.0002674_0.41456_0.0002674.png
                gene_name: THSD7B
               theta_stop: 0.11 
                    nperm: 5000000 
                     p_ks: 0.00027 
        ci_ks_bounds_left: 0.00025 
       ci_ks_bounds_right: 0.00028 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.00027 
     ci_joint_bounds_left: 0.00025 
    ci_joint_bounds_right: 0.00028 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000174
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 174 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1540>
Subject: Job 9878265: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1540>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000175> was used as the working directory.
Started at Fri Oct  5 22:59:51 2012
Results reported at Fri Oct  5 23:02:11 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000175.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000175.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 175  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000175.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    142.66 sec.
    Max Memory :      2008 MB
    Max Swap   :      4656 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
175
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 175
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 175: processing genes 15778 - 15867
Calculating significance of each gene.
Using projection method.
15778	TIAM2	1
15779	TICAM1	1
15780	TIE1	2.544139e-01
15781	TIFA	1
15782	TIFAB	1
15783	TIGD2	1.337306e-01
15784	TIGD3	1.757418e-01
15785	TIGD4	1.468400e-01
15786	TIGD5	1
15787	TIGD6	1
15788	TIGD7	1
15789	TIGIT	1
15790	TIMD4	1.656248e-02
15791	TIMELESS	3.065168e-02
15792	TIMM10	1
15793	TIMM13	1
15794	TIMM16	1
15795	TIMM17A	1
15796	TIMM17B	1
15797	TIMM22	1.855341e-02
15798	TIMM23	1
15799	TIMM44	1
15800	TIMM50	1
15801	TIMM8A	1
15802	TIMM8B	1
15803	TIMM9	1
15804	TIMP1	1
15805	TIMP2	1
15806	TIMP3	1
15807	TIMP4	1
15808	TINAG	1
15809	TINAGL1	1
15810	TINF2	1
15811	TIPARP	1
15812	TIPIN	1
15813	TIPRL	1
15814	TIRAP	1
15815	TJAP1	1
15816	TJP1	4.434269e-01
15817	TJP2	5.335969e-02
15818	TJP3	1
15819	TK1	1
15820	TK2	1
15821	TKT	1.588291e-01
15822	TKTL1	1
15823	TKTL2	1.402640e-01
15824	TLCD1	1
15825	TLE1	1
15826	TLE2	1
15827	TLE3	1
15828	TLE4	1
15829	TLE6	1
15830	TLK1	4.572548e-02
15831	TLK2	1.514667e-01
15832	TLL1	1.193458e-02
15833	TLL2	1
15834	TLN1	6.236911e-01
15835	TLN2	1
15836	TLR1	1
15837	TLR10	1
15838	TLR2	1
15839	TLR3	1
15840	TLR4	1
15841	TLR5	1
15842	TLR6	1
15843	TLR7	1
15844	TLR8	1
15845	TLR9	1
15846	TLX1	6.170231e-02
15847	TLX1NB	1
15848	TLX2	1
15849	TLX3	1
15850	TM2D1	1
15851	TM2D2	1
15852	TM2D3	1
15853	TM4SF1	1
In gene TM4SF18 the following bins exceed PROBCAP:
    PRAD-EJ-5512	categ 6	N = 626     n = 1	mu =   1.66e-07
15854	TM4SF18	1.091037e-02
15855	TM4SF19	1
15856	TM4SF20	1
15857	TM4SF4	1
15858	TM4SF5	1
15859	TM6SF1	1
15860	TM6SF2	1
15861	TM7SF2	9.630666e-02
15862	TM7SF3	1
15863	TM7SF4	1.386594e-01
15864	TM9SF1	1.538702e-01
15865	TM9SF2	1.102947e-01
15866	TM9SF3	1
15867	TM9SF4	1
Done

Running MutSig 2:
Scatter job 175: processing genes 15778 - 15867
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TIMELESS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.914447e-03	ci left: 9.929600e-01	ci right 9.959408e-01	k: 9946	n:10000
KS ci ratio: 2.929540e-02	ci left: 6.321112e-01	ci right 6.510063e-01	k: 6416	n:10000
TIMELESS   10000 perm   2 sec   (4075 perm/sec)   p_kst 6.416000e-01   p_cons 9.946000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000175/TIMELESS.2_3739_10000_0.6416_0.9946_1.png
                gene_name: TIMELESS
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
TJP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.055786e-02	ci left: 7.761063e-01	ci right 7.923278e-01	k: 7843	n:10000
KS ci ratio: 1.017199e-01	ci left: 1.226845e-01	ci right 1.359322e-01	k: 1292	n:10000
TJP2   10000 perm   2 sec   (5005 perm/sec)   p_kst 1.292000e-01   p_cons 7.843000e-01   p_joint 1

Joint ci ratio: 3.037973e-02	ci left: 4.473316e-01	ci right 4.611817e-01	k: 9085	n:20000
Cons ci ratio: 1.421162e-02	ci left: 7.861562e-01	ci right 7.974588e-01	k: 15837	n:20000
KS ci ratio: 7.208824e-02	ci left: 1.241375e-01	ci right 1.334707e-01	k: 2575	n:20000
TJP2   20000 perm   4 sec   (4448 perm/sec)   p_kst 1.287500e-01   p_cons 7.918500e-01   p_joint 4.542500e-01

Outputting figure to mutsig2_images.part000000000175/TJP2.2_3924_20000_0.12875_0.79185_0.45425.png
                gene_name: TJP2
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.46 

Current progress: 67 percent done.
TLL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.613273e-02	ci left: 4.095037e-01	ci right 4.289434e-01	k: 4192	n:10000
KS ci ratio: 3.567568e-02	ci left: 5.370809e-01	ci right 5.566918e-01	k: 5469	n:10000
TLL1   10000 perm   2 sec   (5515 perm/sec)   p_kst 5.469000e-01   p_cons 4.192000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000175/TLL1.2_3126_10000_0.5469_0.4192_1.png
                gene_name: TLL1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000175
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 175 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1724>
Subject: Job 9878268: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1724>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000176> was used as the working directory.
Started at Fri Oct  5 22:59:51 2012
Results reported at Fri Oct  5 23:00:44 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000176.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000176.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 176  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000176.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     46.03 sec.
    Max Memory :       885 MB
    Max Swap   :      3710 MB

    Max Processes  :         7
    Max Threads    :        67

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
176
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 176
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 176: processing genes 15868 - 15958
Calculating significance of each gene.
Using projection method.
15868	TMBIM1	1
15869	TMBIM4	1
15870	TMBIM6	1
15871	TMC1	1.110590e-01
15872	TMC2	1
15873	TMC3	1
15874	TMC4	1
15875	TMC5	1
15876	TMC6	1
15877	TMC7	1
15878	TMC8	1
15879	TMCC1	1
In gene TMCC2 the following bins exceed PROBCAP:
    PRAD-G9-6371	categ 6	N = 2117    n = 1	mu =   1.34e-07
15880	TMCC2	5.375414e-02
15881	TMCC3	1
15882	TMCO1	1
15883	TMCO2	1
15884	TMCO3	1
15885	TMCO4	1
15886	TMCO5A	1
15887	TMCO6	1
In gene TMCO7 the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 3158    n = 1	mu =   6.75e-07
15888	TMCO7	2.576945e-01
15889	TMED1	1
15890	TMED10	1
15891	TMED2	1
15892	TMED3	1
15893	TMED4	1
15894	TMED5	1
15895	TMED6	1
15896	TMED7	1
15897	TMED7-TICAM2	1
15898	TMED8	1
15899	TMED9	3.799082e-02
15900	TMEFF1	1
15901	TMEFF2	1
15902	TMEM100	1
15903	TMEM101	1
15904	TMEM102	1
15905	TMEM104	1
15906	TMEM105	1
15907	TMEM106A	1
15908	TMEM106B	1
15909	TMEM106C	1
15910	TMEM107	1
15911	TMEM108	1
15912	TMEM109	1
15913	TMEM11	1
15914	TMEM110	6.333064e-02
15915	TMEM111	1
15916	TMEM115	1
15917	TMEM116	1
15918	TMEM117	1
15919	TMEM119	1
15920	TMEM120A	1
15921	TMEM120B	1
15922	TMEM121	1
15923	TMEM123	1
15924	TMEM125	1
15925	TMEM126A	1
15926	TMEM126B	1
15927	TMEM127	1
15928	TMEM128	1
15929	TMEM130	1
15930	TMEM131	1
15931	TMEM132A	1.340398e-01
15932	TMEM132B	1.585871e-01
15933	TMEM132D	2.564075e-01
15934	TMEM132E	1
15935	TMEM133	1
15936	TMEM134	1
15937	TMEM135	1
15938	TMEM136	1
15939	TMEM138	1
15940	TMEM139	1
15941	TMEM140	1
15942	TMEM141	8.176497e-03
15943	TMEM143	1
15944	TMEM144	9.300915e-02
15945	TMEM145	1
15946	TMEM146	1.260624e-01
15947	TMEM147	1
15948	TMEM149	1
15949	TMEM14A	1
15950	TMEM14B	4.947637e-03
15951	TMEM14C	1
15952	TMEM14E	1
15953	TMEM150A	1
15954	TMEM150B	1
15955	TMEM150C	1
15956	TMEM151A	1
15957	TMEM154	1
15958	TMEM155	1
Done

Running MutSig 2:
Scatter job 176: processing genes 15868 - 15958
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000176
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 176 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1723>
Subject: Job 9878271: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1723>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000177> was used as the working directory.
Started at Fri Oct  5 22:59:51 2012
Results reported at Fri Oct  5 23:00:53 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000177.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000177.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 177  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000177.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     46.69 sec.
    Max Memory :      1134 MB
    Max Swap   :      3956 MB

    Max Processes  :         7
    Max Threads    :        67

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
177
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 177
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 177: processing genes 15959 - 16049
Calculating significance of each gene.
Using projection method.
15959	TMEM156	1
15960	TMEM159	1
15961	TMEM161A	1
15962	TMEM161B	1
15963	TMEM163	1
15964	TMEM164	1
In gene TMEM165 the following bins exceed PROBCAP:
    PRAD-CH-5788	categ 6	N = 788     n = 1	mu =   2.66e-07
15965	TMEM165	2.687845e-02
15966	TMEM167A	1
15967	TMEM167B	1.100919e-02
15968	TMEM168	1
15969	TMEM169	1
15970	TMEM17	1
15971	TMEM170A	1
15972	TMEM170B	1
15973	TMEM171	1
15974	TMEM173	1
15975	TMEM174	1
15976	TMEM175	1
15977	TMEM176A	1
15978	TMEM176B	1
15979	TMEM177	1
15980	TMEM178	1
15981	TMEM179	1
15982	TMEM179B	1
15983	TMEM18	1
15984	TMEM180	1
15985	TMEM181	1
15986	TMEM182	1
15987	TMEM183A	1
15988	TMEM183B	1
15989	TMEM184A	1
15990	TMEM184B	1
15991	TMEM184C	6.246297e-02
15992	TMEM185A	1
15993	TMEM186	1
15994	TMEM187	1
15995	TMEM188	1
15996	TMEM189	1
15997	TMEM189-UBE2V1	1
15998	TMEM19	1
15999	TMEM190	1
16000/18134 16000	TMEM192	1
16001	TMEM194A	1
16002	TMEM195	1.085454e-01
16003	TMEM196	1
16004	TMEM198	6.020721e-02
16005	TMEM199	1
16006	TMEM2	1
16007	TMEM20	1
16008	TMEM200A	1
16009	TMEM200B	1
16010	TMEM200C	1
16011	TMEM201	1
16012	TMEM202	1
16013	TMEM203	1
16014	TMEM204	1
16015	TMEM205	1
16016	TMEM206	1
16017	TMEM207	1
16018	TMEM208	1
16019	TMEM209	1
16020	TMEM211	1
16021	TMEM213	1
16022	TMEM214	1
16023	TMEM215	1
16024	TMEM216	1
16025	TMEM217	1
16026	TMEM218	1
16027	TMEM219	1
16028	TMEM22	1
16029	TMEM220	3.798341e-03
16030	TMEM222	1
16031	TMEM223	1
16032	TMEM225	1
16033	TMEM229B	1
16034	TMEM231	1
16035	TMEM25	1
16036	TMEM26	1
16037	TMEM27	1
16038	TMEM30A	1
16039	TMEM30B	1
16040	TMEM31	1
16041	TMEM33	1
16042	TMEM35	1
16043	TMEM37	1
16044	TMEM38A	1
16045	TMEM38B	1
16046	TMEM39A	1
16047	TMEM39B	1
16048	TMEM40	1
16049	TMEM41A	1
Done

Running MutSig 2:
Scatter job 177: processing genes 15959 - 16049
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000177
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 177 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1422>
Subject: Job 9878273: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1422>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000178> was used as the working directory.
Started at Fri Oct  5 23:00:54 2012
Results reported at Fri Oct  5 23:03:00 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000178.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000178.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 178  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000178.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    114.99 sec.
    Max Memory :      1134 MB
    Max Swap   :      3924 MB

    Max Processes  :         7
    Max Threads    :        55

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
178
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 178
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 178: processing genes 16050 - 16139
Calculating significance of each gene.
Using projection method.
16050	TMEM41B	1
16051	TMEM42	1
16052	TMEM43	1
16053	TMEM44	1
16054	TMEM45A	1
16055	TMEM45B	1
16056	TMEM47	1
16057	TMEM48	1
16058	TMEM49	1
16059	TMEM5	1
16060	TMEM50A	1
16061	TMEM50B	1
16062	TMEM51	1
16063	TMEM52	1
16064	TMEM53	1
16065	TMEM54	1
16066	TMEM55A	1
16067	TMEM55B	1
16068	TMEM56	8.546811e-02
16069	TMEM57	1
16070	TMEM59	1
16071	TMEM59L	1
16072	TMEM60	1
16073	TMEM61	1
16074	TMEM62	1
16075	TMEM63A	1
16076	TMEM63B	1
16077	TMEM63C	1
16078	TMEM64	1
16079	TMEM65	1
16080	TMEM66	1
16081	TMEM67	1
16082	TMEM68	1
16083	TMEM69	1
16084	TMEM70	1
16085	TMEM71	1
16086	TMEM72	1
16087	TMEM74	1
16088	TMEM79	1
16089	TMEM80	1
16090	TMEM81	1
16091	TMEM82	1
16092	TMEM85	1
16093	TMEM86A	1
16094	TMEM86B	1
16095	TMEM87A	1
16096	TMEM87B	1
16097	TMEM88	1
16098	TMEM89	1
16099	TMEM8A	1
16100	TMEM8B	1
16101	TMEM8C	1
16102	TMEM9	1
16103	TMEM90A	1
16104	TMEM90B	1
16105	TMEM91	1
16106	TMEM92	1
16107	TMEM93	1
16108	TMEM95	1
16109	TMEM97	1
16110	TMEM98	1
16111	TMEM99	1
16112	TMEM9B	1
16113	TMF1	1
16114	TMIE	1
16115	TMIGD1	1
16116	TMIGD2	1
16117	TMLHE	1
16118	TMOD1	1
16119	TMOD2	8.291507e-03
16120	TMOD3	1
16121	TMOD4	1.098950e-01
16122	TMPO	1
16123	TMPPE	1
16124	TMPRSS11A	1
16125	TMPRSS11B	1
16126	TMPRSS11D	6.163335e-02
16127	TMPRSS11E	1
16128	TMPRSS11F	1.320493e-01
16129	TMPRSS12	1
16130	TMPRSS13	1
16131	TMPRSS15	1
16132	TMPRSS2	9.477894e-02
16133	TMPRSS3	1
16134	TMPRSS4	1
16135	TMPRSS5	1
16136	TMPRSS6	1
16137	TMPRSS7	8.331934e-02
16138	TMPRSS9	1
16139	TMSB10	1
Done

Running MutSig 2:
Scatter job 178: processing genes 16050 - 16139
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000178
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 178 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1648>
Subject: Job 9878275: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1648>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000179> was used as the working directory.
Started at Fri Oct  5 23:00:54 2012
Results reported at Fri Oct  5 23:11:40 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000179.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000179.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 179  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000179.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    670.56 sec.
    Max Memory :      2089 MB
    Max Swap   :      4615 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
179
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 179
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 179: processing genes 16140 - 16230
Calculating significance of each gene.
Using projection method.
16140	TMSB15A	1
16141	TMSB15B	1
16142	TMSB4X	1
16143	TMSB4Y	1
16144	TMSL3	1
16145	TMTC1	1
16146	TMTC2	1
16147	TMTC3	1
16148	TMTC4	1.086192e-01
16149	TMUB1	1
16150	TMUB2	1
16151	TMX1	1
16152	TMX2	1
16153	TMX3	1
16154	TMX4	1
16155	TNC	9.608321e-02
16156	TNF	1
16157	TNFAIP1	1
16158	TNFAIP2	4.273024e-02
16159	TNFAIP3	1.076875e-01
16160	TNFAIP6	1
16161	TNFAIP8	1
16162	TNFAIP8L1	1
16163	TNFAIP8L2	1
16164	TNFAIP8L3	1
16165	TNFRSF10A	1.130358e-01
16166	TNFRSF10B	1
16167	TNFRSF10C	3.500030e-03
16168	TNFRSF10D	1
16169	TNFRSF11A	1
16170	TNFRSF11B	7.247359e-02
16171	TNFRSF12A	1
16172	TNFRSF13B	1
16173	TNFRSF13C	1
16174	TNFRSF14	1
16175	TNFRSF17	1
16176	TNFRSF18	1
16177	TNFRSF19	1
16178	TNFRSF1A	1
16179	TNFRSF1B	1
16180	TNFRSF21	1
16181	TNFRSF25	1
16182	TNFRSF4	1
16183	TNFRSF6B	1
16184	TNFRSF8	1
16185	TNFRSF9	1
16186	TNFSF10	1
16187	TNFSF11	1
16188	TNFSF12	7.405290e-02
16189	TNFSF12-TNFSF13	1
16190	TNFSF13	1
16191	TNFSF13B	1
16192	TNFSF14	1
16193	TNFSF15	1
16194	TNFSF18	1
16195	TNFSF4	1
16196	TNFSF8	1
16197	TNFSF9	1
16198	TNIK	1
16199	TNIP1	1
16200	TNIP2	1
In gene TNIP3 the following bins exceed PROBCAP:
    PRAD-CH-5765	categ 6	N = 1022    n = 1	mu =   3.34e-07
16201	TNIP3	4.462348e-02
16202	TNK1	1
16203	TNK2	2.242316e-01
16204	TNKS	1.489594e-02
16205	TNKS1BP1	3.105778e-01
16206	TNKS2	1
16207	TNMD	1
16208	TNN	3.528142e-02
16209	TNNC1	1
16210	TNNC2	1
16211	TNNI1	1
16212	TNNI2	1
16213	TNNI3	1
16214	TNNI3K	7.754767e-02
16215	TNNT1	1
16216	TNNT2	1
16217	TNNT3	1
16218	TNP1	1
16219	TNP2	1
16220	TNPO1	1
16221	TNPO2	1
16222	TNPO3	1
16223	TNR	1
16224	TNRC18	1
16225	TNRC6A	1
16226	TNRC6B	1
16227	TNRC6C	2.840096e-01
16228	TNS1	8.296055e-02
16229	TNS3	1
16230	TNS4	1
Done

Running MutSig 2:
Scatter job 179: processing genes 16140 - 16230
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TNKS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.845350e-02	ci left: 6.454882e-01	ci right 6.642215e-01	k: 6549	n:10000
KS ci ratio: 1.992472e-02	ci left: 7.866480e-01	ci right 8.025800e-01	k: 7947	n:10000
TNKS   10000 perm   2 sec   (5125 perm/sec)   p_kst 7.947000e-01   p_cons 6.549000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000179/TNKS.3_4092_10000_0.7947_0.6549_1.png
                gene_name: TNKS
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 20 percent done.
TNC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.719499e-01	ci left: 4.513859e-02	ci right 5.372632e-02	k: 493	n:10000
Cons ci ratio: 3.469974e-01	ci left: 1.041531e-02	ci right 1.487532e-02	k: 125	n:10000
KS ci ratio: 4.152048e-03	ci left: 9.867570e-01	ci right 9.909509e-01	k: 9890	n:10000
TNC   10000 perm   2 sec   (4718 perm/sec)   p_kst 9.890000e-01   p_cons 1.250000e-02   p_joint 4.930000e-02

Joint ci ratio: 1.760084e-01	ci left: 2.206683e-02	ci right 2.637302e-02	k: 483	n:20000
Cons ci ratio: 2.419888e-01	ci left: 1.138222e-02	ci right 1.456171e-02	k: 258	n:20000
KS ci ratio: 2.827375e-03	ci left: 9.882556e-01	ci right 9.910994e-01	k: 19795	n:20000
TNC   20000 perm   5 sec   (4287 perm/sec)   p_kst 9.897500e-01   p_cons 1.290000e-02   p_joint 2.415000e-02

Joint ci ratio: 1.432069e-01	ci left: 2.261928e-02	ci right 2.614032e-02	k: 730	n:30000
Cons ci ratio: 1.974559e-01	ci left: 1.168546e-02	ci right 1.427680e-02	k: 388	n:30000
KS ci ratio: 2.319936e-03	ci left: 9.884218e-01	ci right 9.907485e-01	k: 29689	n:30000
TNC   30000 perm   7 sec   (4129 perm/sec)   p_kst 9.896333e-01   p_cons 1.293333e-02   p_joint 2.433333e-02

Joint ci ratio: 1.241955e-01	ci left: 2.278890e-02	ci right 2.583069e-02	k: 971	n:40000
Cons ci ratio: 1.699543e-01	ci left: 1.200868e-02	ci right 1.426282e-02	k: 524	n:40000
KS ci ratio: 2.004279e-03	ci left: 9.886355e-01	ci right 9.906425e-01	k: 39587	n:40000
TNC   40000 perm   10 sec   (3943 perm/sec)   p_kst 9.896750e-01   p_cons 1.310000e-02   p_joint 2.427500e-02

Joint ci ratio: 1.473335e-01	ci left: 1.293064e-02	ci right 1.500635e-02	k: 697	n:50000
Cons ci ratio: 1.506513e-01	ci left: 1.235273e-02	ci right 1.438435e-02	k: 667	n:50000
KS ci ratio: 1.800564e-03	ci left: 9.886509e-01	ci right 9.904516e-01	k: 49479	n:50000
TNC   50000 perm   13 sec   (3853 perm/sec)   p_kst 9.895800e-01   p_cons 1.334000e-02   p_joint 1.394000e-02

Joint ci ratio: 1.180356e-01	ci left: 1.698358e-02	ci right 1.913006e-02	k: 1082	n:60000
Cons ci ratio: 1.373172e-01	ci left: 1.247914e-02	ci right 1.433503e-02	k: 803	n:60000
KS ci ratio: 1.632522e-03	ci left: 9.888770e-01	ci right 9.905085e-01	k: 59383	n:60000
TNC   60000 perm   16 sec   (3769 perm/sec)   p_kst 9.897167e-01   p_cons 1.338333e-02   p_joint 1.803333e-02

Joint ci ratio: 1.193146e-01	ci left: 1.427892e-02	ci right 1.610445e-02	k: 1062	n:70000
Cons ci ratio: 1.265852e-01	ci left: 1.265817e-02	ci right 1.438250e-02	k: 945	n:70000
KS ci ratio: 1.502936e-03	ci left: 9.890575e-01	ci right 9.905587e-01	k: 69288	n:70000
TNC   70000 perm   19 sec   (3698 perm/sec)   p_kst 9.898286e-01   p_cons 1.350000e-02   p_joint 1.517143e-02

Joint ci ratio: 1.106806e-01	ci left: 1.458239e-02	ci right 1.630301e-02	k: 1234	n:80000
Cons ci ratio: 1.186403e-01	ci left: 1.266321e-02	ci right 1.427236e-02	k: 1076	n:80000
KS ci ratio: 1.396381e-03	ci left: 9.892474e-01	ci right 9.906417e-01	k: 79197	n:80000
TNC   80000 perm   22 sec   (3636 perm/sec)   p_kst 9.899625e-01   p_cons 1.345000e-02   p_joint 1.542500e-02

Joint ci ratio: 9.999422e-02	ci left: 1.594871e-02	ci right 1.763820e-02	k: 1510	n:90000
Cons ci ratio: 1.117910e-01	ci left: 1.272379e-02	ci right 1.424114e-02	k: 1212	n:90000
KS ci ratio: 1.310262e-03	ci left: 9.893857e-01	ci right 9.906935e-01	k: 89105	n:90000
TNC   90000 perm   25 sec   (3578 perm/sec)   p_kst 9.900556e-01   p_cons 1.346667e-02   p_joint 1.677778e-02

Joint ci ratio: 9.663093e-02	ci left: 1.540708e-02	ci right 1.698117e-02	k: 1618	n:100000
Cons ci ratio: 1.047917e-01	ci left: 1.307633e-02	ci right 1.453207e-02	k: 1379	n:100000
KS ci ratio: 1.238887e-03	ci left: 9.894876e-01	ci right 9.907238e-01	k: 99012	n:100000
TNC   100000 perm   28 sec   (3532 perm/sec)   p_kst 9.901200e-01   p_cons 1.379000e-02   p_joint 1.618000e-02

Joint ci ratio: 9.613231e-02	ci left: 1.417456e-02	ci right 1.561482e-02	k: 1637	n:110000
Cons ci ratio: 9.948395e-02	ci left: 1.322530e-02	ci right 1.461869e-02	k: 1530	n:110000
KS ci ratio: 1.190576e-03	ci left: 9.893569e-01	ci right 9.905443e-01	k: 108896	n:110000
TNC   110000 perm   32 sec   (3484 perm/sec)   p_kst 9.899636e-01   p_cons 1.390909e-02   p_joint 1.488182e-02

Outputting figure to mutsig2_images.part000000000179/TNC.2_6714_110000_0.98996_0.013909_0.014882.png
                gene_name: TNC
               theta_stop: 0.099 
                    nperm: 110000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.014 
    ci_joint_bounds_right: 0.016 

Current progress: 40 percent done.
TNFRSF10C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.244374e-01	ci left: 2.627129e-02	ci right 3.300643e-02	k: 295	n:10000
Cons ci ratio: 3.858401e-03	ci left: 9.883990e-01	ci right 9.923073e-01	k: 9905	n:10000
KS ci ratio: 7.991661e-01	ci left: 1.458544e-03	ci right 3.449143e-03	k: 23	n:10000
TNFRSF10C   10000 perm   1 sec   (6821 perm/sec)   p_kst 2.300000e-03   p_cons 9.905000e-01   p_joint 2.950000e-02

Joint ci ratio: 1.957807e-01	ci left: 1.772392e-02	ci right 2.161749e-02	k: 392	n:20000
Cons ci ratio: 2.764294e-03	ci left: 9.887361e-01	ci right 9.915186e-01	k: 19804	n:20000
KS ci ratio: 6.620044e-01	ci left: 1.177578e-03	ci right 2.374777e-03	k: 34	n:20000
TNFRSF10C   20000 perm   3 sec   (6156 perm/sec)   p_kst 1.700000e-03   p_cons 9.902000e-01   p_joint 1.960000e-02

Joint ci ratio: 1.852866e-01	ci left: 1.333682e-02	ci right 1.609167e-02	k: 440	n:30000
Cons ci ratio: 2.216275e-03	ci left: 9.893721e-01	ci right 9.915981e-01	k: 29716	n:30000
KS ci ratio: 5.653410e-01	ci left: 1.151348e-03	ci right 2.082796e-03	k: 47	n:30000
TNFRSF10C   30000 perm   5 sec   (5863 perm/sec)   p_kst 1.566667e-03   p_cons 9.905333e-01   p_joint 1.466667e-02

Joint ci ratio: 1.503958e-01	ci left: 1.544281e-02	ci right 1.797805e-02	k: 667	n:40000
Cons ci ratio: 1.934631e-03	ci left: 9.893693e-01	ci right 9.913086e-01	k: 39615	n:40000
KS ci ratio: 4.934784e-01	ci left: 1.188576e-03	ci right 1.986596e-03	k: 62	n:40000
TNFRSF10C   40000 perm   7 sec   (5687 perm/sec)   p_kst 1.550000e-03   p_cons 9.903750e-01   p_joint 1.667500e-02

Joint ci ratio: 1.318150e-01	ci left: 1.623327e-02	ci right 1.854325e-02	k: 868	n:50000
Cons ci ratio: 1.797075e-03	ci left: 9.886926e-01	ci right 9.904899e-01	k: 49481	n:50000
KS ci ratio: 4.379142e-01	ci left: 1.251094e-03	ci right 1.968768e-03	k: 79	n:50000
TNFRSF10C   50000 perm   9 sec   (5556 perm/sec)   p_kst 1.580000e-03   p_cons 9.896200e-01   p_joint 1.736000e-02

Joint ci ratio: 1.203773e-01	ci left: 1.632029e-02	ci right 1.842677e-02	k: 1041	n:60000
Cons ci ratio: 1.640511e-03	ci left: 9.887731e-01	ci right 9.904123e-01	k: 59377	n:60000
KS ci ratio: 3.976905e-01	ci left: 1.296191e-03	ci right 1.953528e-03	k: 96	n:60000
TNFRSF10C   60000 perm   11 sec   (5437 perm/sec)   p_kst 1.600000e-03   p_cons 9.896167e-01   p_joint 1.735000e-02

Joint ci ratio: 1.114789e-01	ci left: 1.638868e-02	ci right 1.833733e-02	k: 1214	n:70000
Cons ci ratio: 1.516717e-03	ci left: 9.888651e-01	ci right 9.903796e-01	k: 69275	n:70000
KS ci ratio: 3.751728e-01	ci left: 1.265802e-03	ci right 1.862455e-03	k: 108	n:70000
TNFRSF10C   70000 perm   13 sec   (5326 perm/sec)   p_kst 1.542857e-03   p_cons 9.896429e-01   p_joint 1.734286e-02

Joint ci ratio: 1.044926e-01	ci left: 1.638341e-02	ci right 1.820184e-02	k: 1382	n:80000
Cons ci ratio: 1.407740e-03	ci left: 9.890794e-01	ci right 9.904847e-01	k: 79184	n:80000
KS ci ratio: 3.435251e-01	ci left: 1.346431e-03	ci right 1.915692e-03	k: 129	n:80000
TNFRSF10C   80000 perm   15 sec   (5221 perm/sec)   p_kst 1.612500e-03   p_cons 9.898000e-01   p_joint 1.727500e-02

Joint ci ratio: 9.952630e-02	ci left: 1.610045e-02	ci right 1.779756e-02	k: 1524	n:90000
Cons ci ratio: 1.305824e-03	ci left: 9.894545e-01	ci right 9.907580e-01	k: 89111	n:90000
KS ci ratio: 3.187356e-01	ci left: 1.410797e-03	ci right 1.955464e-03	k: 150	n:90000
TNFRSF10C   90000 perm   18 sec   (5117 perm/sec)   p_kst 1.666667e-03   p_cons 9.901222e-01   p_joint 1.693333e-02

Joint ci ratio: 9.471637e-02	ci left: 1.604177e-02	ci right 1.764643e-02	k: 1683	n:100000
Cons ci ratio: 1.228725e-03	ci left: 9.896525e-01	ci right 9.908788e-01	k: 99028	n:100000
KS ci ratio: 3.003931e-01	ci left: 1.444974e-03	ci right 1.964614e-03	k: 169	n:100000
TNFRSF10C   100000 perm   21 sec   (4860 perm/sec)   p_kst 1.690000e-03   p_cons 9.902800e-01   p_joint 1.683000e-02

Joint ci ratio: 9.416738e-02	ci left: 1.477824e-02	ci right 1.624746e-02	k: 1705	n:110000
Cons ci ratio: 1.168614e-03	ci left: 9.897312e-01	ci right 9.908972e-01	k: 108936	n:110000
KS ci ratio: 2.887431e-01	ci left: 1.431483e-03	ci right 1.922663e-03	k: 183	n:110000
TNFRSF10C   110000 perm   23 sec   (4767 perm/sec)   p_kst 1.663636e-03   p_cons 9.903273e-01   p_joint 1.550000e-02

Joint ci ratio: 7.833407e-02	ci left: 1.964030e-02	ci right 2.124966e-02	k: 2452	n:120000
Cons ci ratio: 1.120896e-03	ci left: 9.897207e-01	ci right 9.908387e-01	k: 118835	n:120000
KS ci ratio: 2.790579e-01	ci left: 1.412813e-03	ci right 1.878469e-03	k: 196	n:120000
TNFRSF10C   120000 perm   26 sec   (4693 perm/sec)   p_kst 1.633333e-03   p_cons 9.902917e-01   p_joint 2.043333e-02

Joint ci ratio: 8.677858e-02	ci left: 1.478277e-02	ci right 1.613127e-02	k: 2008	n:130000
Cons ci ratio: 1.080291e-03	ci left: 9.896812e-01	ci right 9.907583e-01	k: 128730	n:130000
KS ci ratio: 2.664995e-01	ci left: 1.440301e-03	ci right 1.890089e-03	k: 215	n:130000
TNFRSF10C   130000 perm   28 sec   (4616 perm/sec)   p_kst 1.653846e-03   p_cons 9.902308e-01   p_joint 1.544615e-02

Joint ci ratio: 8.724675e-02	ci left: 1.359374e-02	ci right 1.484079e-02	k: 1989	n:140000
Cons ci ratio: 1.042235e-03	ci left: 9.896775e-01	ci right 9.907164e-01	k: 138629	n:140000
KS ci ratio: 2.588280e-01	ci left: 1.424165e-03	ci right 1.854042e-03	k: 228	n:140000
TNFRSF10C   140000 perm   31 sec   (4500 perm/sec)   p_kst 1.628571e-03   p_cons 9.902071e-01   p_joint 1.420714e-02

Joint ci ratio: 8.477661e-02	ci left: 1.345719e-02	ci right 1.465503e-02	k: 2107	n:150000
Cons ci ratio: 1.007933e-03	ci left: 9.896749e-01	ci right 9.906794e-01	k: 148528	n:150000
KS ci ratio: 2.507473e-01	ci left: 1.422836e-03	ci right 1.836811e-03	k: 243	n:150000
TNFRSF10C   150000 perm   34 sec   (4437 perm/sec)   p_kst 1.620000e-03   p_cons 9.901867e-01   p_joint 1.404667e-02

Joint ci ratio: 8.365575e-02	ci left: 1.297085e-02	ci right 1.410938e-02	k: 2165	n:160000
Cons ci ratio: 9.746102e-04	ci left: 9.897180e-01	ci right 9.906891e-01	k: 158434	n:160000
KS ci ratio: 2.443257e-01	ci left: 1.410118e-03	ci right 1.808291e-03	k: 256	n:160000
TNFRSF10C   160000 perm   37 sec   (4372 perm/sec)   p_kst 1.600000e-03   p_cons 9.902125e-01   p_joint 1.353125e-02

Joint ci ratio: 8.519622e-02	ci left: 1.177568e-02	ci right 1.282928e-02	k: 2090	n:170000
Cons ci ratio: 9.509628e-04	ci left: 9.896180e-01	ci right 9.905652e-01	k: 168317	n:170000
KS ci ratio: 2.383734e-01	ci left: 1.399016e-03	ci right 1.783009e-03	k: 269	n:170000
TNFRSF10C   170000 perm   39 sec   (4305 perm/sec)   p_kst 1.582353e-03   p_cons 9.901000e-01   p_joint 1.229412e-02

Joint ci ratio: 8.268250e-02	ci left: 1.182311e-02	ci right 1.284824e-02	k: 2219	n:180000
Cons ci ratio: 9.228455e-04	ci left: 9.896603e-01	ci right 9.905794e-01	k: 178223	n:180000
KS ci ratio: 2.316096e-01	ci left: 1.404950e-03	ci right 1.778064e-03	k: 285	n:180000
TNFRSF10C   180000 perm   42 sec   (4242 perm/sec)   p_kst 1.583333e-03   p_cons 9.901278e-01   p_joint 1.232778e-02

Joint ci ratio: 8.078028e-02	ci left: 1.174732e-02	ci right 1.274133e-02	k: 2325	n:190000
Cons ci ratio: 9.011818e-04	ci left: 9.896070e-01	ci right 9.905043e-01	k: 188112	n:190000
KS ci ratio: 2.269008e-01	ci left: 1.390535e-03	ci right 1.751262e-03	k: 297	n:190000
TNFRSF10C   190000 perm   45 sec   (4181 perm/sec)   p_kst 1.563158e-03   p_cons 9.900632e-01   p_joint 1.223684e-02

Joint ci ratio: 8.114128e-02	ci left: 1.106672e-02	ci right 1.200752e-02	k: 2306	n:200000
Cons ci ratio: 8.778237e-04	ci left: 9.896309e-01	ci right 9.905048e-01	k: 198015	n:200000
KS ci ratio: 2.196473e-01	ci left: 1.415419e-03	ci right 1.769279e-03	k: 317	n:200000
TNFRSF10C   200000 perm   49 sec   (4110 perm/sec)   p_kst 1.585000e-03   p_cons 9.900750e-01   p_joint 1.153000e-02

Joint ci ratio: 7.944082e-02	ci left: 1.100634e-02	ci right 1.192150e-02	k: 2406	n:210000
Cons ci ratio: 8.576433e-04	ci left: 9.896187e-01	ci right 9.904724e-01	k: 207911	n:210000
KS ci ratio: 2.152923e-01	ci left: 1.406550e-03	ci right 1.750300e-03	k: 330	n:210000
TNFRSF10C   210000 perm   52 sec   (4050 perm/sec)   p_kst 1.571429e-03   p_cons 9.900524e-01   p_joint 1.145714e-02

Joint ci ratio: 7.726822e-02	ci left: 1.111661e-02	ci right 1.201451e-02	k: 2543	n:220000
Cons ci ratio: 8.397547e-04	ci left: 9.895847e-01	ci right 9.904205e-01	k: 217802	n:220000
KS ci ratio: 2.087690e-01	ci left: 1.433005e-03	ci right 1.771253e-03	k: 351	n:220000
TNFRSF10C   220000 perm   55 sec   (3993 perm/sec)   p_kst 1.595455e-03   p_cons 9.900091e-01   p_joint 1.155909e-02

Joint ci ratio: 8.323115e-02	ci left: 9.154419e-03	ci right 9.953666e-03	k: 2196	n:230000
Cons ci ratio: 7.909970e-04	ci left: 9.903259e-01	ci right 9.911138e-01	k: 227867	n:230000
KS ci ratio: 2.036267e-01	ci left: 1.444922e-03	ci right 1.776537e-03	k: 369	n:230000
TNFRSF10C   230000 perm   58 sec   (3937 perm/sec)   p_kst 1.604348e-03   p_cons 9.907261e-01   p_joint 9.547826e-03

Joint ci ratio: 8.170432e-02	ci left: 9.111678e-03	ci right 9.891904e-03	k: 2279	n:240000
Cons ci ratio: 7.754334e-04	ci left: 9.903079e-01	ci right 9.910802e-01	k: 237768	n:240000
KS ci ratio: 2.004046e-01	ci left: 1.432187e-03	ci right 1.755042e-03	k: 381	n:240000
TNFRSF10C   240000 perm   62 sec   (3886 perm/sec)   p_kst 1.587500e-03   p_cons 9.907000e-01   p_joint 9.495833e-03

Joint ci ratio: 8.015584e-02	ci left: 9.096002e-03	ci right 9.859435e-03	k: 2368	n:250000
Cons ci ratio: 7.604190e-04	ci left: 9.902997e-01	ci right 9.910569e-01	k: 247671	n:250000
KS ci ratio: 1.963350e-01	ci left: 1.435721e-03	ci right 1.752014e-03	k: 397	n:250000
TNFRSF10C   250000 perm   65 sec   (3833 perm/sec)   p_kst 1.588000e-03   p_cons 9.906840e-01   p_joint 9.472000e-03

Joint ci ratio: 7.921441e-02	ci left: 8.960993e-03	ci right 9.703852e-03	k: 2425	n:260000
Cons ci ratio: 7.435997e-04	ci left: 9.903589e-01	ci right 9.910993e-01	k: 257591	n:260000
KS ci ratio: 1.927370e-01	ci left: 1.435383e-03	ci right 1.745128e-03	k: 412	n:260000
TNFRSF10C   260000 perm   69 sec   (3763 perm/sec)   p_kst 1.584615e-03   p_cons 9.907346e-01   p_joint 9.326923e-03

Joint ci ratio: 7.758314e-02	ci left: 9.003115e-03	ci right 9.733401e-03	k: 2528	n:270000
Cons ci ratio: 7.298921e-04	ci left: 9.903610e-01	ci right 9.910877e-01	k: 267497	n:270000
KS ci ratio: 1.882317e-01	ci left: 1.452764e-03	ci right 1.758094e-03	k: 432	n:270000
TNFRSF10C   270000 perm   73 sec   (3714 perm/sec)   p_kst 1.600000e-03   p_cons 9.907296e-01   p_joint 9.362963e-03

Joint ci ratio: 7.619491e-02	ci left: 9.007332e-03	ci right 9.724307e-03	k: 2621	n:280000
Cons ci ratio: 7.163582e-04	ci left: 9.903776e-01	ci right 9.910908e-01	k: 277407	n:280000
KS ci ratio: 1.854692e-01	ci left: 1.445136e-03	ci right 1.743903e-03	k: 445	n:280000
TNFRSF10C   280000 perm   77 sec   (3646 perm/sec)   p_kst 1.589286e-03   p_cons 9.907393e-01   p_joint 9.360714e-03

Joint ci ratio: 7.510234e-02	ci left: 8.957220e-03	ci right 9.659536e-03	k: 2698	n:290000
Cons ci ratio: 7.024904e-04	ci left: 9.904213e-01	ci right 9.911206e-01	k: 287325	n:290000
KS ci ratio: 1.830246e-01	ci left: 1.434774e-03	ci right 1.727056e-03	k: 457	n:290000
TNFRSF10C   290000 perm   81 sec   (3599 perm/sec)   p_kst 1.575862e-03   p_cons 9.907759e-01   p_joint 9.303448e-03

Joint ci ratio: 7.400164e-02	ci left: 8.923606e-03	ci right 9.612590e-03	k: 2779	n:300000
Cons ci ratio: 6.887572e-04	ci left: 9.904791e-01	ci right 9.911647e-01	k: 297248	n:300000
KS ci ratio: 1.789660e-01	ci left: 1.453778e-03	ci right 1.742653e-03	k: 478	n:300000
TNFRSF10C   300000 perm   84 sec   (3555 perm/sec)   p_kst 1.593333e-03   p_cons 9.908267e-01   p_joint 9.263333e-03

Joint ci ratio: 7.794180e-02	ci left: 7.777970e-03	ci right 8.411923e-03	k: 2508	n:310000
Cons ci ratio: 6.780660e-04	ci left: 9.904708e-01	ci right 9.911458e-01	k: 307152	n:310000
KS ci ratio: 1.773101e-01	ci left: 1.434619e-03	ci right 1.716766e-03	k: 487	n:310000
TNFRSF10C   310000 perm   88 sec   (3510 perm/sec)   p_kst 1.570968e-03   p_cons 9.908129e-01   p_joint 8.090323e-03

Joint ci ratio: 7.666858e-02	ci left: 7.792336e-03	ci right 8.416622e-03	k: 2592	n:320000
Cons ci ratio: 6.678563e-04	ci left: 9.904632e-01	ci right 9.911279e-01	k: 317056	n:320000
KS ci ratio: 1.741272e-01	ci left: 1.443564e-03	ci right 1.721838e-03	k: 505	n:320000
TNFRSF10C   320000 perm   92 sec   (3467 perm/sec)   p_kst 1.578125e-03   p_cons 9.908000e-01   p_joint 8.100000e-03

Joint ci ratio: 7.566981e-02	ci left: 7.761308e-03	ci right 8.374651e-03	k: 2661	n:330000
Cons ci ratio: 6.582023e-04	ci left: 9.904530e-01	ci right 9.911081e-01	k: 326959	n:330000
KS ci ratio: 1.724331e-01	ci left: 1.428807e-03	ci right 1.701278e-03	k: 515	n:330000
TNFRSF10C   330000 perm   96 sec   (3424 perm/sec)   p_kst 1.560606e-03   p_cons 9.907848e-01   p_joint 8.063636e-03

Joint ci ratio: 7.466774e-02	ci left: 7.740815e-03	ci right 8.344086e-03	k: 2733	n:340000
Cons ci ratio: 6.484318e-04	ci left: 9.904584e-01	ci right 9.911037e-01	k: 336867	n:340000
KS ci ratio: 1.706252e-01	ci left: 1.417747e-03	ci right 1.684982e-03	k: 526	n:340000
TNFRSF10C   340000 perm   100 sec   (3384 perm/sec)   p_kst 1.547059e-03   p_cons 9.907853e-01   p_joint 8.038235e-03

Joint ci ratio: 7.367798e-02	ci left: 7.727153e-03	ci right 8.321035e-03	k: 2807	n:350000
Cons ci ratio: 6.375826e-04	ci left: 9.905072e-01	ci right 9.911417e-01	k: 346790	n:350000
KS ci ratio: 1.682478e-01	ci left: 1.418279e-03	ci right 1.681512e-03	k: 541	n:350000
TNFRSF10C   350000 perm   105 sec   (3344 perm/sec)   p_kst 1.545714e-03   p_cons 9.908286e-01   p_joint 8.020000e-03

Joint ci ratio: 7.267575e-02	ci left: 7.725212e-03	ci right 8.310527e-03	k: 2885	n:360000
Cons ci ratio: 6.275361e-04	ci left: 9.905449e-01	ci right 9.911694e-01	k: 356710	n:360000
KS ci ratio: 1.661164e-01	ci left: 1.416144e-03	ci right 1.675318e-03	k: 555	n:360000
TNFRSF10C   360000 perm   109 sec   (3305 perm/sec)   p_kst 1.541667e-03   p_cons 9.908611e-01   p_joint 8.013889e-03

Joint ci ratio: 7.157955e-02	ci left: 7.752628e-03	ci right 8.330792e-03	k: 2974	n:370000
Cons ci ratio: 6.194210e-04	ci left: 9.905366e-01	ci right 9.911530e-01	k: 366614	n:370000
KS ci ratio: 1.634905e-01	ci left: 1.424513e-03	ci right 1.680692e-03	k: 573	n:370000
TNFRSF10C   370000 perm   113 sec   (3266 perm/sec)   p_kst 1.548649e-03   p_cons 9.908486e-01   p_joint 8.037838e-03

Joint ci ratio: 7.062451e-02	ci left: 7.757980e-03	ci right 8.328507e-03	k: 3055	n:380000
Cons ci ratio: 6.115232e-04	ci left: 9.905315e-01	ci right 9.911400e-01	k: 376519	n:380000
KS ci ratio: 1.607136e-01	ci left: 1.437523e-03	ci right 1.691227e-03	k: 593	n:380000
TNFRSF10C   380000 perm   118 sec   (3230 perm/sec)   p_kst 1.560526e-03   p_cons 9.908395e-01   p_joint 8.039474e-03

Joint ci ratio: 6.980773e-02	ci left: 7.740429e-03	ci right 8.302815e-03	k: 3127	n:390000
Cons ci ratio: 6.031521e-04	ci left: 9.905501e-01	ci right 9.911502e-01	k: 386433	n:390000
KS ci ratio: 1.589838e-01	ci left: 1.432663e-03	ci right 1.682529e-03	k: 606	n:390000
TNFRSF10C   390000 perm   122 sec   (3193 perm/sec)   p_kst 1.553846e-03   p_cons 9.908538e-01   p_joint 8.017949e-03

Joint ci ratio: 6.896435e-02	ci left: 7.736078e-03	ci right 8.291085e-03	k: 3204	n:400000
Cons ci ratio: 5.963458e-04	ci left: 9.905298e-01	ci right 9.911231e-01	k: 396332	n:400000
KS ci ratio: 1.564268e-01	ci left: 1.444874e-03	ci right 1.692436e-03	k: 626	n:400000
TNFRSF10C   400000 perm   127 sec   (3156 perm/sec)   p_kst 1.565000e-03   p_cons 9.908300e-01   p_joint 8.010000e-03

Joint ci ratio: 6.803597e-02	ci left: 7.758353e-03	ci right 8.307170e-03	k: 3292	n:410000
Cons ci ratio: 5.888131e-04	ci left: 9.905402e-01	ci right 9.911260e-01	k: 406243	n:410000
KS ci ratio: 1.544683e-01	ci left: 1.447140e-03	ci right 1.691698e-03	k: 642	n:410000
TNFRSF10C   410000 perm   131 sec   (3121 perm/sec)   p_kst 1.565854e-03   p_cons 9.908366e-01   p_joint 8.029268e-03

Joint ci ratio: 6.710410e-02	ci left: 7.788981e-03	ci right 8.332124e-03	k: 3384	n:420000
Cons ci ratio: 5.807952e-04	ci left: 9.905744e-01	ci right 9.911522e-01	k: 416164	n:420000
KS ci ratio: 1.522348e-01	ci left: 1.456187e-03	ci right 1.698392e-03	k: 661	n:420000
TNFRSF10C   420000 perm   136 sec   (3081 perm/sec)   p_kst 1.573810e-03   p_cons 9.908667e-01   p_joint 8.057143e-03

Joint ci ratio: 6.410533e-02	ci left: 8.344475e-03	ci right 8.899386e-03	k: 3706	n:430000
Cons ci ratio: 5.729426e-04	ci left: 9.906117e-01	ci right 9.911817e-01	k: 426087	n:430000
KS ci ratio: 1.503168e-01	ci left: 1.460361e-03	ci right 1.699924e-03	k: 678	n:430000
TNFRSF10C   430000 perm   141 sec   (3049 perm/sec)   p_kst 1.576744e-03   p_cons 9.909000e-01   p_joint 8.618605e-03

Joint ci ratio: 6.547004e-02	ci left: 7.817135e-03	ci right 8.348464e-03	k: 3555	n:440000
Cons ci ratio: 5.676047e-04	ci left: 9.905758e-01	ci right 9.911404e-01	k: 435979	n:440000
KS ci ratio: 1.485764e-01	ci left: 1.462175e-03	ci right 1.699012e-03	k: 694	n:440000
TNFRSF10C   440000 perm   146 sec   (3018 perm/sec)   p_kst 1.577273e-03   p_cons 9.908614e-01   p_joint 8.079545e-03

Joint ci ratio: 6.488091e-02	ci left: 7.785507e-03	ci right 8.309746e-03	k: 3620	n:450000
Cons ci ratio: 5.612345e-04	ci left: 9.905799e-01	ci right 9.911382e-01	k: 445888	n:450000
KS ci ratio: 1.471025e-01	ci left: 1.459642e-03	ci right 1.693517e-03	k: 708	n:450000
TNFRSF10C   450000 perm   151 sec   (2988 perm/sec)   p_kst 1.573333e-03   p_cons 9.908622e-01   p_joint 8.044444e-03

Joint ci ratio: 6.419338e-02	ci left: 7.783086e-03	ci right 8.301401e-03	k: 3698	n:460000
Cons ci ratio: 5.544073e-04	ci left: 9.906059e-01	ci right 9.911574e-01	k: 455807	n:460000
KS ci ratio: 1.458738e-01	ci left: 1.453041e-03	ci right 1.683745e-03	k: 720	n:460000
TNFRSF10C   460000 perm   156 sec   (2956 perm/sec)   p_kst 1.565217e-03   p_cons 9.908848e-01   p_joint 8.039130e-03

Joint ci ratio: 6.330795e-02	ci left: 7.835244e-03	ci right 8.349571e-03	k: 3802	n:470000
Cons ci ratio: 5.473028e-04	ci left: 9.906482e-01	ci right 9.911926e-01	k: 465734	n:470000
KS ci ratio: 1.444781e-01	ci left: 1.450830e-03	ci right 1.678789e-03	k: 734	n:470000
TNFRSF10C   470000 perm   161 sec   (2925 perm/sec)   p_kst 1.561702e-03   p_cons 9.909234e-01   p_joint 8.089362e-03

Joint ci ratio: 6.262808e-02	ci left: 7.842204e-03	ci right 8.351260e-03	k: 3885	n:480000
Cons ci ratio: 5.417732e-04	ci left: 9.906442e-01	ci right 9.911831e-01	k: 475640	n:480000
KS ci ratio: 1.428355e-01	ci left: 1.454749e-03	ci right 1.680503e-03	k: 751	n:480000
TNFRSF10C   480000 perm   166 sec   (2886 perm/sec)   p_kst 1.564583e-03   p_cons 9.909167e-01   p_joint 8.093750e-03

Joint ci ratio: 6.189893e-02	ci left: 7.866994e-03	ci right 8.371501e-03	k: 3977	n:490000
Cons ci ratio: 5.363468e-04	ci left: 9.906426e-01	ci right 9.911761e-01	k: 485547	n:490000
KS ci ratio: 1.411558e-01	ci left: 1.460490e-03	ci right 1.684245e-03	k: 769	n:490000
TNFRSF10C   490000 perm   172 sec   (2857 perm/sec)   p_kst 1.569388e-03   p_cons 9.909122e-01   p_joint 8.116327e-03

Joint ci ratio: 6.133156e-02	ci left: 7.855373e-03	ci right 8.354352e-03	k: 4051	n:500000
Cons ci ratio: 5.313159e-04	ci left: 9.906329e-01	ci right 9.911614e-01	k: 495450	n:500000
KS ci ratio: 1.401589e-01	ci left: 1.452506e-03	ci right 1.673335e-03	k: 780	n:500000
TNFRSF10C   500000 perm   177 sec   (2827 perm/sec)   p_kst 1.560000e-03   p_cons 9.909000e-01   p_joint 8.102000e-03

Joint ci ratio: 6.065365e-02	ci left: 7.877058e-03	ci right 8.371691e-03	k: 4142	n:510000
Cons ci ratio: 5.266516e-04	ci left: 9.906157e-01	ci right 9.911395e-01	k: 505349	n:510000
KS ci ratio: 1.382247e-01	ci left: 1.465661e-03	ci right 1.685162e-03	k: 802	n:510000
TNFRSF10C   510000 perm   182 sec   (2799 perm/sec)   p_kst 1.572549e-03   p_cons 9.908804e-01   p_joint 8.121569e-03

Joint ci ratio: 6.001918e-02	ci left: 7.892256e-03	ci right 8.382479e-03	k: 4230	n:520000
Cons ci ratio: 5.216066e-04	ci left: 9.906167e-01	ci right 9.911355e-01	k: 515257	n:520000
KS ci ratio: 1.372882e-01	ci left: 1.457899e-03	ci right 1.674638e-03	k: 813	n:520000
TNFRSF10C   520000 perm   188 sec   (2771 perm/sec)   p_kst 1.563462e-03   p_cons 9.908788e-01   p_joint 8.134615e-03

Joint ci ratio: 5.948063e-02	ci left: 7.886457e-03	ci right 8.371773e-03	k: 4307	n:530000
Cons ci ratio: 5.160026e-04	ci left: 9.906426e-01	ci right 9.911558e-01	k: 525178	n:530000
KS ci ratio: 1.356315e-01	ci left: 1.466840e-03	ci right 1.682064e-03	k: 833	n:530000
TNFRSF10C   530000 perm   193 sec   (2744 perm/sec)   p_kst 1.571698e-03   p_cons 9.909019e-01   p_joint 8.126415e-03

Joint ci ratio: 5.884143e-02	ci left: 7.911914e-03	ci right 8.393386e-03	k: 4401	n:540000
Cons ci ratio: 5.115173e-04	ci left: 9.906338e-01	ci right 9.911424e-01	k: 535081	n:540000
KS ci ratio: 1.336421e-01	ci left: 1.484414e-03	ci right 1.698768e-03	k: 858	n:540000
TNFRSF10C   540000 perm   199 sec   (2717 perm/sec)   p_kst 1.588889e-03   p_cons 9.908907e-01   p_joint 8.150000e-03

Joint ci ratio: 5.827470e-02	ci left: 7.922136e-03	ci right 8.399430e-03	k: 4487	n:550000
Cons ci ratio: 5.064318e-04	ci left: 9.906511e-01	ci right 9.911547e-01	k: 544998	n:550000
KS ci ratio: 1.324905e-01	ci left: 1.483789e-03	ci right 1.696062e-03	k: 873	n:550000
TNFRSF10C   550000 perm   204 sec   (2690 perm/sec)   p_kst 1.587273e-03   p_cons 9.909055e-01   p_joint 8.158182e-03

Joint ci ratio: 5.774313e-02	ci left: 7.926734e-03	ci right 8.399804e-03	k: 4570	n:560000
Cons ci ratio: 5.020407e-04	ci left: 9.906478e-01	ci right 9.911471e-01	k: 554904	n:560000
KS ci ratio: 1.315906e-01	ci left: 1.478014e-03	ci right 1.687911e-03	k: 885	n:560000
TNFRSF10C   560000 perm   210 sec   (2662 perm/sec)   p_kst 1.580357e-03   p_cons 9.909000e-01   p_joint 8.160714e-03

Joint ci ratio: 5.719488e-02	ci left: 7.939837e-03	ci right 8.409042e-03	k: 4658	n:570000
Cons ci ratio: 4.974228e-04	ci left: 9.906572e-01	ci right 9.911518e-01	k: 564817	n:570000
KS ci ratio: 1.298429e-01	ci left: 1.492813e-03	ci right 1.701779e-03	k: 909	n:570000
TNFRSF10C   570000 perm   216 sec   (2634 perm/sec)   p_kst 1.594737e-03   p_cons 9.909070e-01   p_joint 8.171930e-03

Joint ci ratio: 5.678268e-02	ci left: 7.918512e-03	ci right 8.382973e-03	k: 4726	n:580000
Cons ci ratio: 4.927883e-04	ci left: 9.906715e-01	ci right 9.911615e-01	k: 574733	n:580000
KS ci ratio: 1.288557e-01	ci left: 1.490431e-03	ci right 1.697357e-03	k: 923	n:580000
TNFRSF10C   580000 perm   222 sec   (2607 perm/sec)   p_kst 1.591379e-03   p_cons 9.909190e-01   p_joint 8.148276e-03

Joint ci ratio: 5.626698e-02	ci left: 7.929675e-03	ci right 8.390429e-03	k: 4813	n:590000
Cons ci ratio: 4.886942e-04	ci left: 9.906699e-01	ci right 9.911558e-01	k: 584640	n:590000
KS ci ratio: 1.278906e-01	ci left: 1.488136e-03	ci right 1.693079e-03	k: 937	n:590000
TNFRSF10C   590000 perm   229 sec   (2579 perm/sec)   p_kst 1.588136e-03   p_cons 9.909153e-01   p_joint 8.157627e-03

Joint ci ratio: 5.585708e-02	ci left: 7.914186e-03	ci right 8.370582e-03	k: 4884	n:600000
Cons ci ratio: 4.851935e-04	ci left: 9.906498e-01	ci right 9.911322e-01	k: 594536	n:600000
KS ci ratio: 1.271478e-01	ci left: 1.481082e-03	ci right 1.683779e-03	k: 948	n:600000
TNFRSF10C   600000 perm   235 sec   (2550 perm/sec)   p_kst 1.580000e-03   p_cons 9.908933e-01   p_joint 8.140000e-03

Joint ci ratio: 5.539969e-02	ci left: 7.915385e-03	ci right 8.367993e-03	k: 4965	n:610000
Cons ci ratio: 4.816333e-04	ci left: 9.906353e-01	ci right 9.911141e-01	k: 604435	n:610000
KS ci ratio: 1.260893e-01	ci left: 1.482201e-03	ci right 1.683236e-03	k: 964	n:610000
TNFRSF10C   610000 perm   242 sec   (2523 perm/sec)   p_kst 1.580328e-03   p_cons 9.908770e-01   p_joint 8.139344e-03

Joint ci ratio: 5.486028e-02	ci left: 7.943607e-03	ci right 8.393265e-03	k: 5063	n:620000
Cons ci ratio: 4.783617e-04	ci left: 9.906131e-01	ci right 9.910887e-01	k: 614329	n:620000
KS ci ratio: 1.244862e-01	ci left: 1.497354e-03	ci right 1.697672e-03	k: 989	n:620000
TNFRSF10C   620000 perm   248 sec   (2498 perm/sec)   p_kst 1.595161e-03   p_cons 9.908532e-01   p_joint 8.166129e-03

Joint ci ratio: 5.437350e-02	ci left: 7.959991e-03	ci right 8.406454e-03	k: 5154	n:630000
Cons ci ratio: 4.754432e-04	ci left: 9.905805e-01	ci right 9.910531e-01	k: 624216	n:630000
KS ci ratio: 1.231860e-01	ci left: 1.505888e-03	ci right 1.705089e-03	k: 1010	n:630000
TNFRSF10C   630000 perm   255 sec   (2473 perm/sec)   p_kst 1.603175e-03   p_cons 9.908190e-01   p_joint 8.180952e-03

Joint ci ratio: 5.388392e-02	ci left: 7.980506e-03	ci right 8.423963e-03	k: 5248	n:640000
Cons ci ratio: 4.716403e-04	ci left: 9.905852e-01	ci right 9.910541e-01	k: 634126	n:640000
KS ci ratio: 1.218076e-01	ci left: 1.517195e-03	ci right 1.715485e-03	k: 1033	n:640000
TNFRSF10C   640000 perm   261 sec   (2451 perm/sec)   p_kst 1.614063e-03   p_cons 9.908219e-01   p_joint 8.200000e-03

Joint ci ratio: 5.349826e-02	ci left: 7.973081e-03	ci right 8.412858e-03	k: 5324	n:650000
Cons ci ratio: 4.687577e-04	ci left: 9.905571e-01	ci right 9.910231e-01	k: 644015	n:650000
KS ci ratio: 1.211653e-01	ci left: 1.510262e-03	ci right 1.706530e-03	k: 1044	n:650000
TNFRSF10C   650000 perm   268 sec   (2428 perm/sec)   p_kst 1.606154e-03   p_cons 9.907923e-01   p_joint 8.190769e-03

Joint ci ratio: 5.315054e-02	ci left: 7.956922e-03	ci right 8.392867e-03	k: 5394	n:660000
Cons ci ratio: 4.651508e-04	ci left: 9.905606e-01	ci right 9.910230e-01	k: 653924	n:660000
KS ci ratio: 1.203050e-01	ci left: 1.509420e-03	ci right 1.704087e-03	k: 1059	n:660000
TNFRSF10C   660000 perm   274 sec   (2405 perm/sec)   p_kst 1.604545e-03   p_cons 9.907939e-01   p_joint 8.172727e-03

Joint ci ratio: 5.275116e-02	ci left: 7.958929e-03	ci right 8.391608e-03	k: 5476	n:670000
Cons ci ratio: 4.611724e-04	ci left: 9.905821e-01	ci right 9.910405e-01	k: 663845	n:670000
KS ci ratio: 1.192962e-01	ci left: 1.512952e-03	ci right 1.706323e-03	k: 1077	n:670000
TNFRSF10C   670000 perm   281 sec   (2383 perm/sec)   p_kst 1.607463e-03   p_cons 9.908134e-01   p_joint 8.173134e-03

Joint ci ratio: 5.230375e-02	ci left: 7.978308e-03	ci right 8.408251e-03	k: 5570	n:680000
Cons ci ratio: 4.578473e-04	ci left: 9.905807e-01	ci right 9.910357e-01	k: 673751	n:680000
KS ci ratio: 1.184207e-01	ci left: 1.513533e-03	ci right 1.705459e-03	k: 1093	n:680000
TNFRSF10C   680000 perm   288 sec   (2362 perm/sec)   p_kst 1.607353e-03   p_cons 9.908103e-01   p_joint 8.191176e-03

Joint ci ratio: 5.189063e-02	ci left: 7.989987e-03	ci right 8.417056e-03	k: 5659	n:690000
Cons ci ratio: 4.544483e-04	ci left: 9.905851e-01	ci right 9.910368e-01	k: 683661	n:690000
KS ci ratio: 1.172471e-01	ci left: 1.522542e-03	ci right 1.713565e-03	k: 1115	n:690000
TNFRSF10C   690000 perm   295 sec   (2341 perm/sec)   p_kst 1.615942e-03   p_cons 9.908130e-01   p_joint 8.201449e-03

Joint ci ratio: 5.156861e-02	ci left: 7.975959e-03	ci right 8.399554e-03	k: 5730	n:700000
Cons ci ratio: 4.514778e-04	ci left: 9.905750e-01	ci right 9.910238e-01	k: 693561	n:700000
KS ci ratio: 1.163641e-01	ci left: 1.524368e-03	ci right 1.714080e-03	k: 1132	n:700000
TNFRSF10C   700000 perm   302 sec   (2319 perm/sec)   p_kst 1.617143e-03   p_cons 9.908014e-01   p_joint 8.185714e-03

Joint ci ratio: 5.115481e-02	ci left: 7.992927e-03	ci right 8.413917e-03	k: 5823	n:710000
Cons ci ratio: 4.484256e-04	ci left: 9.905709e-01	ci right 9.910166e-01	k: 703465	n:710000
KS ci ratio: 1.153502e-01	ci left: 1.530251e-03	ci right 1.718923e-03	k: 1152	n:710000
TNFRSF10C   710000 perm   309 sec   (2300 perm/sec)   p_kst 1.622535e-03   p_cons 9.907958e-01   p_joint 8.201408e-03

Joint ci ratio: 5.080279e-02	ci left: 7.992980e-03	ci right 8.410991e-03	k: 5904	n:720000
Cons ci ratio: 4.448239e-04	ci left: 9.905922e-01	ci right 9.910343e-01	k: 713387	n:720000
KS ci ratio: 1.142161e-01	ci left: 1.540025e-03	ci right 1.727910e-03	k: 1175	n:720000
TNFRSF10C   720000 perm   316 sec   (2279 perm/sec)   p_kst 1.631944e-03   p_cons 9.908153e-01   p_joint 8.200000e-03

Joint ci ratio: 5.047494e-02	ci left: 7.987631e-03	ci right 8.402587e-03	k: 5981	n:730000
Cons ci ratio: 4.414720e-04	ci left: 9.906061e-01	ci right 9.910448e-01	k: 723304	n:730000
KS ci ratio: 1.135424e-01	ci left: 1.537561e-03	ci right 1.723964e-03	k: 1189	n:730000
TNFRSF10C   730000 perm   323 sec   (2260 perm/sec)   p_kst 1.628767e-03   p_cons 9.908274e-01   p_joint 8.193151e-03

Joint ci ratio: 5.013251e-02	ci left: 7.989107e-03	ci right 8.401243e-03	k: 6063	n:740000
Cons ci ratio: 4.384874e-04	ci left: 9.906072e-01	ci right 9.910430e-01	k: 733212	n:740000
KS ci ratio: 1.129275e-01	ci left: 1.533853e-03	ci right 1.718732e-03	k: 1202	n:740000
TNFRSF10C   740000 perm   330 sec   (2241 perm/sec)   p_kst 1.624324e-03   p_cons 9.908270e-01   p_joint 8.193243e-03

Joint ci ratio: 4.975208e-02	ci left: 8.005039e-03	ci right 8.414773e-03	k: 6156	n:750000
Cons ci ratio: 4.354668e-04	ci left: 9.906124e-01	ci right 9.910452e-01	k: 743123	n:750000
KS ci ratio: 1.119542e-01	ci left: 1.540614e-03	ci right 1.724603e-03	k: 1223	n:750000
TNFRSF10C   750000 perm   338 sec   (2221 perm/sec)   p_kst 1.630667e-03   p_cons 9.908307e-01   p_joint 8.208000e-03

Joint ci ratio: 4.942804e-02	ci left: 8.004967e-03	ci right 8.411953e-03	k: 6237	n:760000
Cons ci ratio: 4.326016e-04	ci left: 9.906134e-01	ci right 9.910433e-01	k: 753031	n:760000
KS ci ratio: 1.112296e-01	ci left: 1.540808e-03	ci right 1.723551e-03	k: 1239	n:760000
TNFRSF10C   760000 perm   345 sec   (2202 perm/sec)   p_kst 1.630263e-03   p_cons 9.908303e-01   p_joint 8.206579e-03

Joint ci ratio: 4.909460e-02	ci left: 8.010037e-03	ci right 8.414456e-03	k: 6322	n:770000
Cons ci ratio: 4.294542e-04	ci left: 9.906289e-01	ci right 9.910557e-01	k: 762950	n:770000
KS ci ratio: 1.106513e-01	ci left: 1.537212e-03	ci right 1.718518e-03	k: 1252	n:770000
TNFRSF10C   770000 perm   353 sec   (2183 perm/sec)   p_kst 1.625974e-03   p_cons 9.908442e-01   p_joint 8.210390e-03

Joint ci ratio: 4.880237e-02	ci left: 8.003587e-03	ci right 8.405207e-03	k: 6398	n:780000
Cons ci ratio: 4.266451e-04	ci left: 9.906323e-01	ci right 9.910563e-01	k: 772860	n:780000
KS ci ratio: 1.099516e-01	ci left: 1.537451e-03	ci right 1.717565e-03	k: 1268	n:780000
TNFRSF10C   780000 perm   360 sec   (2165 perm/sec)   p_kst 1.625641e-03   p_cons 9.908462e-01   p_joint 8.202564e-03

Joint ci ratio: 4.854177e-02	ci left: 7.988553e-03	ci right 8.387218e-03	k: 6467	n:790000
Cons ci ratio: 4.237128e-04	ci left: 9.906434e-01	ci right 9.910644e-01	k: 782776	n:790000
KS ci ratio: 1.093502e-01	ci left: 1.535225e-03	ci right 1.714031e-03	k: 1282	n:790000
TNFRSF10C   790000 perm   368 sec   (2147 perm/sec)   p_kst 1.622785e-03   p_cons 9.908557e-01   p_joint 8.186076e-03

Joint ci ratio: 4.822954e-02	ci left: 7.992426e-03	ci right 8.388648e-03	k: 6551	n:800000
Cons ci ratio: 4.209559e-04	ci left: 9.906491e-01	ci right 9.910674e-01	k: 792688	n:800000
KS ci ratio: 1.085910e-01	ci left: 1.537922e-03	ci right 1.715718e-03	k: 1300	n:800000
TNFRSF10C   800000 perm   376 sec   (2129 perm/sec)   p_kst 1.625000e-03   p_cons 9.908600e-01   p_joint 8.188750e-03

Joint ci ratio: 4.796335e-02	ci left: 7.982793e-03	ci right 8.376292e-03	k: 6624	n:810000
Cons ci ratio: 4.182236e-04	ci left: 9.906559e-01	ci right 9.910715e-01	k: 802601	n:810000
KS ci ratio: 1.080115e-01	ci left: 1.535751e-03	ci right 1.712289e-03	k: 1314	n:810000
TNFRSF10C   810000 perm   383 sec   (2112 perm/sec)   p_kst 1.622222e-03   p_cons 9.908654e-01   p_joint 8.177778e-03

Joint ci ratio: 4.763703e-02	ci left: 7.995092e-03	ci right 8.386443e-03	k: 6715	n:820000
Cons ci ratio: 4.151513e-04	ci left: 9.906798e-01	ci right 9.910923e-01	k: 812528	n:820000
KS ci ratio: 1.076036e-01	ci left: 1.528888e-03	ci right 1.703931e-03	k: 1324	n:820000
TNFRSF10C   820000 perm   392 sec   (2095 perm/sec)   p_kst 1.614634e-03   p_cons 9.908878e-01   p_joint 8.189024e-03

Joint ci ratio: 4.729626e-02	ci left: 8.014248e-03	ci right 8.403654e-03	k: 6812	n:830000
Cons ci ratio: 4.125841e-04	ci left: 9.906836e-01	ci right 9.910936e-01	k: 822439	n:830000
KS ci ratio: 1.072002e-01	ci left: 1.522192e-03	ci right 1.695774e-03	k: 1334	n:830000
TNFRSF10C   830000 perm   400 sec   (2077 perm/sec)   p_kst 1.607229e-03   p_cons 9.908904e-01   p_joint 8.207229e-03

Joint ci ratio: 4.700044e-02	ci left: 8.020015e-03	ci right 8.407198e-03	k: 6898	n:840000
Cons ci ratio: 4.099557e-04	ci left: 9.906922e-01	ci right 9.910996e-01	k: 832354	n:840000
KS ci ratio: 1.067219e-01	ci left: 1.517974e-03	ci right 1.690254e-03	k: 1346	n:840000
TNFRSF10C   840000 perm   408 sec   (2060 perm/sec)   p_kst 1.602381e-03   p_cons 9.908976e-01   p_joint 8.211905e-03

Joint ci ratio: 4.671347e-02	ci left: 8.024490e-03	ci right 8.409461e-03	k: 6983	n:850000
Cons ci ratio: 4.078814e-04	ci left: 9.906780e-01	ci right 9.910833e-01	k: 842250	n:850000
KS ci ratio: 1.062499e-01	ci left: 1.513857e-03	ci right 1.684863e-03	k: 1358	n:850000
TNFRSF10C   850000 perm   416 sec   (2044 perm/sec)   p_kst 1.597647e-03   p_cons 9.908824e-01   p_joint 8.215294e-03

Joint ci ratio: 4.641846e-02	ci left: 8.033467e-03	ci right 8.416369e-03	k: 7072	n:860000
Cons ci ratio: 4.056026e-04	ci left: 9.906747e-01	ci right 9.910778e-01	k: 852155	n:860000
KS ci ratio: 1.053999e-01	ci left: 1.521158e-03	ci right 1.691529e-03	k: 1380	n:860000
TNFRSF10C   860000 perm   424 sec   (2028 perm/sec)   p_kst 1.604651e-03   p_cons 9.908779e-01   p_joint 8.223256e-03

Joint ci ratio: 4.616472e-02	ci left: 8.029745e-03	ci right 8.410322e-03	k: 7150	n:870000
Cons ci ratio: 4.030793e-04	ci left: 9.906843e-01	ci right 9.910848e-01	k: 862071	n:870000
KS ci ratio: 1.048321e-01	ci left: 1.520462e-03	ci right 1.689781e-03	k: 1395	n:870000
TNFRSF10C   870000 perm   432 sec   (2012 perm/sec)   p_kst 1.603448e-03   p_cons 9.908862e-01   p_joint 8.218391e-03

Joint ci ratio: 4.589590e-02	ci left: 8.032854e-03	ci right 8.411303e-03	k: 7234	n:880000
Cons ci ratio: 4.006023e-04	ci left: 9.906937e-01	ci right 9.910917e-01	k: 871987	n:880000
KS ci ratio: 1.041258e-01	ci left: 1.524211e-03	ci right 1.692733e-03	k: 1414	n:880000
TNFRSF10C   880000 perm   441 sec   (1996 perm/sec)   p_kst 1.606818e-03   p_cons 9.908943e-01   p_joint 8.220455e-03

Joint ci ratio: 4.562543e-02	ci left: 8.038121e-03	ci right 8.414528e-03	k: 7320	n:890000
Cons ci ratio: 3.983189e-04	ci left: 9.906960e-01	ci right 9.910918e-01	k: 881897	n:890000
KS ci ratio: 1.035058e-01	ci left: 1.525690e-03	ci right 1.693311e-03	k: 1431	n:890000
TNFRSF10C   890000 perm   449 sec   (1980 perm/sec)   p_kst 1.607865e-03   p_cons 9.908955e-01   p_joint 8.224719e-03

Joint ci ratio: 4.539679e-02	ci left: 8.030095e-03	ci right 8.404192e-03	k: 7394	n:900000
Cons ci ratio: 3.965128e-04	ci left: 9.906781e-01	ci right 9.910721e-01	k: 891789	n:900000
KS ci ratio: 1.031466e-01	ci left: 1.519562e-03	ci right 1.685895e-03	k: 1441	n:900000
TNFRSF10C   900000 perm   458 sec   (1965 perm/sec)   p_kst 1.601111e-03   p_cons 9.908767e-01   p_joint 8.215556e-03

Joint ci ratio: 4.514718e-02	ci left: 8.030942e-03	ci right 8.402968e-03	k: 7476	n:910000
Cons ci ratio: 3.942984e-04	ci left: 9.906806e-01	ci right 9.910723e-01	k: 901699	n:910000
KS ci ratio: 1.024736e-01	ci left: 1.523206e-03	ci right 1.688784e-03	k: 1460	n:910000
TNFRSF10C   910000 perm   467 sec   (1949 perm/sec)   p_kst 1.604396e-03   p_cons 9.908780e-01   p_joint 8.215385e-03

Joint ci ratio: 4.488368e-02	ci left: 8.038225e-03	ci right 8.408359e-03	k: 7564	n:920000
Cons ci ratio: 3.919083e-04	ci left: 9.906929e-01	ci right 9.910823e-01	k: 911618	n:920000
KS ci ratio: 1.019862e-01	ci left: 1.521477e-03	ci right 1.686034e-03	k: 1474	n:920000
TNFRSF10C   920000 perm   475 sec   (1935 perm/sec)   p_kst 1.602174e-03   p_cons 9.908891e-01   p_joint 8.221739e-03

Joint ci ratio: 4.461886e-02	ci left: 8.047485e-03	ci right 8.415803e-03	k: 7654	n:930000
Cons ci ratio: 3.900249e-04	ci left: 9.906832e-01	ci right 9.910707e-01	k: 921517	n:930000
KS ci ratio: 1.014035e-01	ci left: 1.522932e-03	ci right 1.686649e-03	k: 1491	n:930000
TNFRSF10C   930000 perm   484 sec   (1920 perm/sec)   p_kst 1.603226e-03   p_cons 9.908785e-01   p_joint 8.230108e-03

Joint ci ratio: 4.435290e-02	ci left: 8.058658e-03	ci right 8.425233e-03	k: 7746	n:940000
Cons ci ratio: 3.881222e-04	ci left: 9.906759e-01	ci right 9.910615e-01	k: 931418	n:940000
KS ci ratio: 1.008976e-01	ci left: 1.522284e-03	ci right 1.685067e-03	k: 1506	n:940000
TNFRSF10C   940000 perm   493 sec   (1906 perm/sec)   p_kst 1.602128e-03   p_cons 9.908702e-01   p_joint 8.240426e-03

Joint ci ratio: 4.412287e-02	ci left: 8.058150e-03	ci right 8.422753e-03	k: 7827	n:950000
Cons ci ratio: 3.860896e-04	ci left: 9.906762e-01	ci right 9.910598e-01	k: 941326	n:950000
KS ci ratio: 1.002344e-01	ci left: 1.526784e-03	ci right 1.688911e-03	k: 1526	n:950000
TNFRSF10C   950000 perm   502 sec   (1893 perm/sec)   p_kst 1.606316e-03   p_cons 9.908695e-01   p_joint 8.238947e-03

Joint ci ratio: 4.388519e-02	ci left: 8.061779e-03	ci right 8.424531e-03	k: 7912	n:960000
Cons ci ratio: 3.839338e-04	ci left: 9.906838e-01	ci right 9.910653e-01	k: 951241	n:960000
KS ci ratio: 9.981064e-02	ci left: 1.524082e-03	ci right 1.685199e-03	k: 1539	n:960000
TNFRSF10C   960000 perm   511 sec   (1879 perm/sec)   p_kst 1.603125e-03   p_cons 9.908760e-01   p_joint 8.241667e-03

Outputting figure to mutsig2_images.part000000000179/TNFRSF10C.2_800_960000_0.0016031_0.99088_0.0082417.png
                gene_name: TNFRSF10C
               theta_stop: 0.100 
                    nperm: 960000 
                     p_ks: 0.0016 
        ci_ks_bounds_left: 0.0015 
       ci_ks_bounds_right: 0.0017 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.0082 
     ci_joint_bounds_left: 0.0081 
    ci_joint_bounds_right: 0.0084 

Current progress: 60 percent done.
TNN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.301790e-02	ci left: 7.349217e-01	ci right 7.521362e-01	k: 7436	n:10000
Cons ci ratio: 1.777991e-02	ci left: 8.218818e-01	ci right 8.367259e-01	k: 8294	n:10000
KS ci ratio: 9.265852e-02	ci left: 1.447212e-01	ci right 1.588823e-01	k: 1517	n:10000
TNN   10000 perm   2 sec   (5090 perm/sec)   p_kst 1.517000e-01   p_cons 8.294000e-01   p_joint 7.436000e-01

Outputting figure to mutsig2_images.part000000000179/TNN.2_3972_10000_0.1517_0.8294_0.7436.png
                gene_name: TNN
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 80 percent done.
TNS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.218018e-02	ci left: 2.754728e-01	ci right 2.932529e-01	k: 2843	n:10000
Cons ci ratio: 1.213381e-01	ci left: 8.873809e-02	ci right 1.002994e-01	k: 944	n:10000
KS ci ratio: 1.245212e-02	ci left: 9.025767e-01	ci right 9.139842e-01	k: 9084	n:10000
TNS1   10000 perm   2 sec   (4882 perm/sec)   p_kst 9.084000e-01   p_cons 9.440000e-02   p_joint 2.843000e-01

Joint ci ratio: 5.942286e-02	ci left: 1.733632e-01	ci right 1.840304e-01	k: 3573	n:20000
Cons ci ratio: 8.710467e-02	ci left: 8.793086e-02	ci right 9.598822e-02	k: 1838	n:20000
KS ci ratio: 8.643934e-03	ci left: 9.073767e-01	ci right 9.153033e-01	k: 18228	n:20000
TNS1   20000 perm   5 sec   (4406 perm/sec)   p_kst 9.114000e-01   p_cons 9.190000e-02   p_joint 1.786500e-01

Outputting figure to mutsig2_images.part000000000179/TNS1.2_5320_20000_0.9114_0.0919_0.17865.png
                gene_name: TNS1
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.092 
      ci_cons_bounds_left: 0.088 
     ci_cons_bounds_right: 0.096 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000179
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 179 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1724>
Subject: Job 9878279: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1724>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000180> was used as the working directory.
Started at Fri Oct  5 23:00:54 2012
Results reported at Fri Oct  5 23:15:57 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000180.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000180.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 180  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000180.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    902.55 sec.
    Max Memory :      2047 MB
    Max Swap   :      4715 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
180
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 180
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 180: processing genes 16231 - 16321
Calculating significance of each gene.
Using projection method.
16231	TNXB	5.418494e-01
16232	TOB1	1
16233	TOB2	1
16234	TOE1	1
16235	TOLLIP	1
16236	TOM1	1
16237	TOM1L1	1.171508e-01
16238	TOM1L2	1
16239	TOMM20	1
16240	TOMM20L	1
16241	TOMM22	1
16242	TOMM34	1
16243	TOMM40	1
16244	TOMM40L	1
16245	TOMM5	1
16246	TOMM7	1
16247	TOMM70A	1
16248	TOP1	1
16249	TOP1MT	1
16250	TOP2A	1
16251	TOP2B	1
16252	TOP3A	1
16253	TOP3B	1
16254	TOPBP1	1
16255	TOPORS	1
16256	TOR1A	1
16257	TOR1AIP1	1
16258	TOR1AIP2	1
16259	TOR1B	1
16260	TOR2A	1
16261	TOR3A	1
16262	TOX	1
16263	TOX2	1
16264	TOX3	1
16265	TOX4	1
16266	TP53	8.286009e-07
16267	TP53AIP1	1
16268	TP53BP1	1
16269	TP53BP2	1
16270	TP53I11	1
16271	TP53I13	1
16272	TP53I3	1
16273	TP53INP1	1
16274	TP53INP2	1
16275	TP53RK	1
16276	TP53TG5	3.620618e-02
16277	TP63	1
16278	TP73	1
16279	TPBG	1
16280	TPCN1	7.913293e-02
16281	TPCN2	1
16282	TPD52	1
16283	TPD52L1	7.860609e-02
16284	TPD52L2	1
16285	TPD52L3	1
16286	TPH1	9.666552e-02
16287	TPH2	1
16288	TPI1	1
16289	TPK1	1
16290	TPM1	1
16291	TPM2	1
16292	TPM3	1
16293	TPM4	1
16294	TPMT	1
16295	TPO	1.284890e-01
16296	TPP1	1
16297	TPP2	1
16298	TPPP	4.699711e-02
16299	TPPP2	2.564133e-02
16300	TPPP3	1
In gene TPR the following bins exceed PROBCAP:
    PRAD-EJ-5517	categ 6	N = 7296    n = 1	mu =   1.98e-07
16301	TPR	2.812885e-02
16302	TPRA1	1
16303	TPRG1	1
16304	TPRG1L	1
16305	TPRKB	1
16306	TPRN	6.577789e-03
16307	TPRX1	3.242901e-02
16308	TPSAB1	1
16309	TPSB2	1
16310	TPSD1	1
16311	TPSG1	1
16312	TPST1	9.455889e-02
16313	TPST2	1
16314	TPT1	1
16315	TPTE	1.986769e-02
16316	TPTE2	6.261416e-09
In gene TPX2 the following bins exceed PROBCAP:
    PRAD-G9-6494	categ 6	N = 2308    n = 1	mu =   2.35e-07
16317	TPX2	7.733228e-02
16318	TRA2A	1
16319	TRA2B	1
16320	TRABD	1
16321	TRADD	1
Done

Running MutSig 2:
Scatter job 180: processing genes 16231 - 16321
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TPTE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.366475e-02	ci left: 8.854448e-01	ci right 8.977261e-01	k: 8917	n:10000
Cons ci ratio: 3.576934e-02	ci left: 5.357789e-01	ci right 5.553945e-01	k: 5456	n:10000
KS ci ratio: 1.986367e-02	ci left: 7.876620e-01	ci right 8.035654e-01	k: 7957	n:10000
TPTE2   10000 perm   2 sec   (5950 perm/sec)   p_kst 7.957000e-01   p_cons 5.456000e-01   p_joint 8.917000e-01

Outputting figure to mutsig2_images.part000000000180/TPTE2.6_1649_10000_0.7957_0.5456_0.8917.png
                gene_name: TPTE2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 17 percent done.
TP53
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.602876e-01	ci left: 5.549202e-03	ci right 8.947365e-03	k: 71	n:10000
Cons ci ratio: 1.011330e+00	ci left: 7.655977e-04	ci right 2.347848e-03	k: 14	n:10000
KS ci ratio: 1.380585e-01	ci left: 6.942795e-02	ci right 7.982148e-02	k: 745	n:10000
TP53   10000 perm   1 sec   (6825 perm/sec)   p_kst 7.450000e-02   p_cons 1.400000e-03   p_joint 7.100000e-03

Joint ci ratio: 4.346619e-01	ci left: 3.172987e-03	ci right 4.975909e-03	k: 80	n:20000
Cons ci ratio: 8.168860e-01	ci left: 6.894885e-04	ci right 1.664942e-03	k: 22	n:20000
KS ci ratio: 1.004917e-01	ci left: 6.713637e-02	ci right 7.428904e-02	k: 1413	n:20000
TP53   20000 perm   3 sec   (5860 perm/sec)   p_kst 7.065000e-02   p_cons 1.100000e-03   p_joint 4.000000e-03

Joint ci ratio: 3.994361e-01	ci left: 2.562755e-03	ci right 3.869722e-03	k: 95	n:30000
Cons ci ratio: 7.404523e-01	ci left: 5.931868e-04	ci right 1.309185e-03	k: 27	n:30000
KS ci ratio: 8.207252e-02	ci left: 6.775909e-02	ci right 7.359105e-02	k: 2119	n:30000
TP53   30000 perm   5 sec   (5666 perm/sec)   p_kst 7.063333e-02   p_cons 9.000000e-04   p_joint 3.166667e-03

Joint ci ratio: 3.634302e-01	ci left: 2.374173e-03	ci right 3.450008e-03	k: 115	n:40000
Cons ci ratio: 6.623027e-01	ci left: 5.887193e-04	ci right 1.187589e-03	k: 34	n:40000
KS ci ratio: 7.159173e-02	ci left: 6.722337e-02	ci right 7.223931e-02	k: 2788	n:40000
TP53   40000 perm   7 sec   (5527 perm/sec)   p_kst 6.970000e-02   p_cons 8.500000e-04   p_joint 2.875000e-03

Joint ci ratio: 3.896565e-01	ci left: 1.627567e-03	ci right 2.432010e-03	k: 100	n:50000
Cons ci ratio: 5.906963e-01	ci left: 6.224540e-04	ci right 1.158241e-03	k: 43	n:50000
KS ci ratio: 6.359606e-02	ci left: 6.836971e-02	ci right 7.288029e-02	k: 3530	n:50000
TP53   50000 perm   9 sec   (5410 perm/sec)   p_kst 7.060000e-02   p_cons 8.600000e-04   p_joint 2.000000e-03

Joint ci ratio: 3.859142e-01	ci left: 1.386353e-03	ci right 2.063309e-03	k: 102	n:60000
Cons ci ratio: 5.283260e-01	ci left: 6.761778e-04	ci right 1.174144e-03	k: 54	n:60000
KS ci ratio: 5.765491e-02	ci left: 6.946721e-02	ci right 7.360768e-02	k: 4291	n:60000
TP53   60000 perm   11 sec   (5296 perm/sec)   p_kst 7.151667e-02   p_cons 9.000000e-04   p_joint 1.700000e-03

Joint ci ratio: 3.560530e-01	ci left: 1.421511e-03	ci right 2.049521e-03	k: 120	n:70000
Cons ci ratio: 4.751355e-01	ci left: 7.418472e-04	ci right 1.215381e-03	k: 67	n:70000
KS ci ratio: 5.364592e-02	ci left: 6.896703e-02	ci right 7.278291e-02	k: 4960	n:70000
TP53   70000 perm   14 sec   (5183 perm/sec)   p_kst 7.085714e-02   p_cons 9.571429e-04   p_joint 1.714286e-03

Joint ci ratio: 2.404030e-01	ci left: 2.914443e-03	ci right 3.722240e-03	k: 264	n:80000
Cons ci ratio: 3.937285e-01	ci left: 9.946227e-04	ci right 1.492683e-03	k: 98	n:80000
KS ci ratio: 5.015129e-02	ci left: 6.916788e-02	ci right 7.273831e-02	k: 5675	n:80000
TP53   80000 perm   16 sec   (5082 perm/sec)   p_kst 7.093750e-02   p_cons 1.225000e-03   p_joint 3.300000e-03

Joint ci ratio: 1.285756e-01	ci left: 9.564577e-03	ci right 1.088950e-02	k: 919	n:90000
Cons ci ratio: 3.718384e-01	ci left: 1.004622e-03	ci right 1.472923e-03	k: 110	n:90000
KS ci ratio: 4.718179e-02	ci left: 6.955019e-02	ci right 7.292195e-02	k: 6410	n:90000
TP53   90000 perm   18 sec   (4978 perm/sec)   p_kst 7.122222e-02   p_cons 1.222222e-03   p_joint 1.021111e-02

Joint ci ratio: 1.231529e-01	ci left: 9.411945e-03	ci right 1.065672e-02	k: 1002	n:100000
Cons ci ratio: 3.503945e-01	ci left: 1.031470e-03	ci right 1.478267e-03	k: 124	n:100000
KS ci ratio: 4.477865e-02	ci left: 6.958391e-02	ci right 7.278102e-02	k: 7117	n:100000
TP53   100000 perm   20 sec   (4889 perm/sec)   p_kst 7.117000e-02   p_cons 1.240000e-03   p_joint 1.002000e-02

Joint ci ratio: 1.257655e-01	ci left: 8.203673e-03	ci right 9.313370e-03	k: 962	n:110000
Cons ci ratio: 3.359278e-01	ci left: 1.029086e-03	ci right 1.452462e-03	k: 135	n:110000
KS ci ratio: 4.271182e-02	ci left: 6.960608e-02	ci right 7.265294e-02	k: 7823	n:110000
TP53   110000 perm   23 sec   (4795 perm/sec)   p_kst 7.111818e-02   p_cons 1.227273e-03   p_joint 8.745455e-03

Joint ci ratio: 1.222772e-01	ci left: 7.972164e-03	ci right 9.018464e-03	k: 1018	n:120000
Cons ci ratio: 3.177512e-01	ci left: 1.065734e-03	ci right 1.475646e-03	k: 151	n:120000
KS ci ratio: 4.090965e-02	ci left: 6.961915e-02	ci right 7.253495e-02	k: 8528	n:120000
TP53   120000 perm   26 sec   (4688 perm/sec)   p_kst 7.106667e-02   p_cons 1.258333e-03   p_joint 8.483333e-03

Joint ci ratio: 1.190631e-01	ci left: 7.776640e-03	ci right 8.768559e-03	k: 1074	n:130000
Cons ci ratio: 3.049767e-01	ci left: 1.075945e-03	ci right 1.469920e-03	k: 164	n:130000
KS ci ratio: 3.930874e-02	ci left: 6.966300e-02	ci right 7.246386e-02	k: 9237	n:130000
TP53   130000 perm   28 sec   (4605 perm/sec)   p_kst 7.105385e-02   p_cons 1.261538e-03   p_joint 8.261538e-03

Joint ci ratio: 1.265479e-01	ci left: 6.376184e-03	ci right 7.244431e-03	k: 952	n:140000
Cons ci ratio: 2.987125e-01	ci left: 1.045303e-03	ci right 1.418705e-03	k: 171	n:140000
KS ci ratio: 3.792940e-02	ci left: 6.953965e-02	ci right 7.223529e-02	k: 9923	n:140000
TP53   140000 perm   31 sec   (4532 perm/sec)   p_kst 7.087857e-02   p_cons 1.221429e-03   p_joint 6.800000e-03

Joint ci ratio: 1.784492e-01	ci left: 2.920494e-03	ci right 3.498973e-03	k: 480	n:150000
Cons ci ratio: 2.742673e-01	ci left: 1.173660e-03	ci right 1.552703e-03	k: 203	n:150000
KS ci ratio: 3.664673e-02	ci left: 6.957308e-02	ci right 7.217687e-02	k: 10630	n:150000
TP53   150000 perm   34 sec   (4453 perm/sec)   p_kst 7.086667e-02   p_cons 1.353333e-03   p_joint 3.200000e-03

Joint ci ratio: 1.750331e-01	ci left: 2.851451e-03	ci right 3.404297e-03	k: 499	n:160000
Cons ci ratio: 2.641038e-01	ci left: 1.193561e-03	ci right 1.562387e-03	k: 219	n:160000
KS ci ratio: 3.544897e-02	ci left: 6.974004e-02	ci right 7.226303e-02	k: 11359	n:160000
TP53   160000 perm   36 sec   (4385 perm/sec)   p_kst 7.099375e-02   p_cons 1.368750e-03   p_joint 3.118750e-03

Joint ci ratio: 1.733194e-01	ci left: 2.739963e-03	ci right 3.265448e-03	k: 509	n:170000
Cons ci ratio: 2.566309e-01	ci left: 1.194833e-03	ci right 1.551932e-03	k: 232	n:170000
KS ci ratio: 3.447055e-02	ci left: 6.947426e-02	ci right 7.191688e-02	k: 12017	n:170000
TP53   170000 perm   39 sec   (4318 perm/sec)   p_kst 7.068824e-02   p_cons 1.364706e-03   p_joint 2.994118e-03

Joint ci ratio: 1.703452e-01	ci left: 2.683436e-03	ci right 3.188340e-03	k: 527	n:180000
Cons ci ratio: 2.472549e-01	ci left: 1.222143e-03	ci right 1.572010e-03	k: 250	n:180000
KS ci ratio: 3.348936e-02	ci left: 6.954757e-02	ci right 7.192183e-02	k: 12731	n:180000
TP53   180000 perm   42 sec   (4254 perm/sec)   p_kst 7.072778e-02   p_cons 1.388889e-03   p_joint 2.927778e-03

Joint ci ratio: 1.658517e-01	ci left: 2.688414e-03	ci right 3.179578e-03	k: 556	n:190000
Cons ci ratio: 2.429410e-01	ci left: 1.202277e-03	ci right 1.539547e-03	k: 259	n:190000
KS ci ratio: 3.264498e-02	ci left: 6.938423e-02	ci right 7.169205e-02	k: 13401	n:190000
TP53   190000 perm   45 sec   (4191 perm/sec)   p_kst 7.053158e-02   p_cons 1.363158e-03   p_joint 2.926316e-03

Joint ci ratio: 1.612824e-01	ci left: 2.707446e-03	ci right 3.187140e-03	k: 588	n:200000
Cons ci ratio: 2.388452e-01	ci left: 1.184446e-03	ci right 1.510282e-03	k: 268	n:200000
KS ci ratio: 3.178854e-02	ci left: 6.953569e-02	ci right 7.178677e-02	k: 14131	n:200000
TP53   200000 perm   48 sec   (4127 perm/sec)   p_kst 7.065500e-02   p_cons 1.340000e-03   p_joint 2.940000e-03

Joint ci ratio: 1.691016e-01	ci left: 2.336529e-03	ci right 2.772621e-03	k: 535	n:210000
Cons ci ratio: 2.324513e-01	ci left: 1.195257e-03	ci right 1.514001e-03	k: 283	n:210000
KS ci ratio: 3.107611e-02	ci left: 6.933778e-02	ci right 7.153124e-02	k: 14790	n:210000
TP53   210000 perm   52 sec   (4066 perm/sec)   p_kst 7.042857e-02   p_cons 1.347619e-03   p_joint 2.547619e-03

Joint ci ratio: 9.266737e-02	ci left: 7.694138e-03	ci right 8.446182e-03	k: 1774	n:220000
Cons ci ratio: 2.254153e-01	ci left: 1.218056e-03	ci right 1.531682e-03	k: 301	n:220000
KS ci ratio: 3.076654e-02	ci left: 6.765999e-02	ci right 6.977866e-02	k: 15117	n:220000
TP53   220000 perm   55 sec   (4008 perm/sec)   p_kst 6.871364e-02   p_cons 1.368182e-03   p_joint 8.063636e-03

Joint ci ratio: 9.040194e-02	ci left: 7.741966e-03	ci right 8.479207e-03	k: 1864	n:230000
Cons ci ratio: 2.193251e-01	ci left: 1.234895e-03	ci right 1.543108e-03	k: 318	n:230000
KS ci ratio: 3.009454e-02	ci left: 6.766522e-02	ci right 6.973697e-02	k: 15800	n:230000
TP53   230000 perm   58 sec   (3954 perm/sec)   p_kst 6.869565e-02   p_cons 1.382609e-03   p_joint 8.104348e-03

Joint ci ratio: 1.001605e-01	ci left: 6.023907e-03	ci right 6.663103e-03	k: 1521	n:240000
Cons ci ratio: 2.143431e-01	ci left: 1.242547e-03	ci right 1.544700e-03	k: 333	n:240000
KS ci ratio: 2.942069e-02	ci left: 6.786083e-02	ci right 6.989126e-02	k: 16529	n:240000
TP53   240000 perm   62 sec   (3901 perm/sec)   p_kst 6.887083e-02   p_cons 1.387500e-03   p_joint 6.337500e-03

Joint ci ratio: 1.048118e-01	ci left: 5.272267e-03	ci right 5.859285e-03	k: 1390	n:250000
Cons ci ratio: 2.108996e-01	ci left: 1.234502e-03	ci right 1.529252e-03	k: 344	n:250000
KS ci ratio: 2.884494e-02	ci left: 6.779890e-02	ci right 6.978712e-02	k: 17197	n:250000
TP53   250000 perm   65 sec   (3848 perm/sec)   p_kst 6.878800e-02   p_cons 1.376000e-03   p_joint 5.560000e-03

Joint ci ratio: 1.235984e-01	ci left: 3.615580e-03	ci right 4.095584e-03	k: 1001	n:260000
Cons ci ratio: 2.076169e-01	ci left: 1.227112e-03	ci right 1.514957e-03	k: 355	n:260000
KS ci ratio: 2.773739e-02	ci left: 7.034814e-02	ci right 7.233065e-02	k: 18547	n:260000
TP53   260000 perm   68 sec   (3797 perm/sec)   p_kst 7.133462e-02   p_cons 1.365385e-03   p_joint 3.850000e-03

Joint ci ratio: 1.290180e-01	ci left: 3.187511e-03	ci right 3.630661e-03	k: 919	n:270000
Cons ci ratio: 2.050431e-01	ci left: 1.213273e-03	ci right 1.493902e-03	k: 364	n:270000
KS ci ratio: 2.721614e-02	ci left: 7.037998e-02	ci right 7.232553e-02	k: 19264	n:270000
TP53   270000 perm   72 sec   (3748 perm/sec)   p_kst 7.134815e-02   p_cons 1.348148e-03   p_joint 3.403704e-03

Joint ci ratio: 1.279146e-01	ci left: 3.128972e-03	ci right 3.559981e-03	k: 935	n:280000
Cons ci ratio: 2.020224e-01	ci left: 1.207225e-03	ci right 1.481834e-03	k: 375	n:280000
KS ci ratio: 2.671745e-02	ci left: 7.043826e-02	ci right 7.234919e-02	k: 19989	n:280000
TP53   280000 perm   76 sec   (3699 perm/sec)   p_kst 7.138929e-02   p_cons 1.339286e-03   p_joint 3.339286e-03

Joint ci ratio: 1.048901e-01	ci left: 4.541610e-03	ci right 5.047675e-03	k: 1389	n:290000
Cons ci ratio: 1.991315e-01	ci left: 1.201622e-03	ci right 1.470571e-03	k: 386	n:290000
KS ci ratio: 2.625613e-02	ci left: 7.043799e-02	ci right 7.231542e-02	k: 20698	n:290000
TP53   290000 perm   79 sec   (3649 perm/sec)   p_kst 7.137241e-02   p_cons 1.331034e-03   p_joint 4.789655e-03

Joint ci ratio: 1.071685e-01	ci left: 4.201977e-03	ci right 4.681007e-03	k: 1331	n:300000
Cons ci ratio: 1.966086e-01	ci left: 1.193250e-03	ci right 1.456535e-03	k: 396	n:300000
KS ci ratio: 2.583091e-02	ci left: 7.037173e-02	ci right 7.221656e-02	k: 21387	n:300000
TP53   300000 perm   83 sec   (3599 perm/sec)   p_kst 7.129000e-02   p_cons 1.320000e-03   p_joint 4.436667e-03

Joint ci ratio: 1.077874e-01	ci left: 4.019322e-03	ci right 4.480344e-03	k: 1316	n:310000
Cons ci ratio: 1.927617e-01	ci left: 1.203856e-03	ci right 1.463675e-03	k: 412	n:310000
KS ci ratio: 2.540649e-02	ci left: 7.040939e-02	ci right 7.222444e-02	k: 22107	n:310000
TP53   310000 perm   87 sec   (3555 perm/sec)   p_kst 7.131290e-02   p_cons 1.329032e-03   p_joint 4.245161e-03

Joint ci ratio: 1.064239e-01	ci left: 3.997120e-03	ci right 4.449431e-03	k: 1350	n:320000
Cons ci ratio: 1.886923e-01	ci left: 1.219801e-03	ci right 1.476866e-03	k: 430	n:320000
KS ci ratio: 2.500528e-02	ci left: 7.042939e-02	ci right 7.221588e-02	k: 22822	n:320000
TP53   320000 perm   91 sec   (3509 perm/sec)   p_kst 7.131875e-02   p_cons 1.343750e-03   p_joint 4.218750e-03

Joint ci ratio: 1.049208e-01	ci left: 3.991052e-03	ci right 4.435905e-03	k: 1389	n:330000
Cons ci ratio: 1.859095e-01	ci left: 1.220384e-03	ci right 1.473351e-03	k: 443	n:330000
KS ci ratio: 2.461912e-02	ci left: 7.046648e-02	ci right 7.222591e-02	k: 23543	n:330000
TP53   330000 perm   95 sec   (3466 perm/sec)   p_kst 7.134242e-02   p_cons 1.342424e-03   p_joint 4.209091e-03

Joint ci ratio: 1.051173e-01	ci left: 3.859335e-03	ci right 4.290361e-03	k: 1384	n:340000
Cons ci ratio: 1.836492e-01	ci left: 1.215346e-03	ci right 1.463866e-03	k: 454	n:340000
KS ci ratio: 2.426701e-02	ci left: 7.041091e-02	ci right 7.214346e-02	k: 24233	n:340000
TP53   340000 perm   99 sec   (3421 perm/sec)   p_kst 7.127353e-02   p_cons 1.335294e-03   p_joint 4.070588e-03

Joint ci ratio: 1.042951e-01	ci left: 3.810274e-03	ci right 4.232288e-03	k: 1406	n:350000
Cons ci ratio: 1.810806e-01	ci left: 1.216070e-03	ci right 1.460878e-03	k: 467	n:350000
KS ci ratio: 2.391667e-02	ci left: 7.042973e-02	ci right 7.213738e-02	k: 24948	n:350000
TP53   350000 perm   103 sec   (3383 perm/sec)   p_kst 7.128000e-02   p_cons 1.334286e-03   p_joint 4.017143e-03

Joint ci ratio: 1.030223e-01	ci left: 3.799134e-03	ci right 4.214468e-03	k: 1441	n:360000
Cons ci ratio: 1.786169e-01	ci left: 1.216775e-03	ci right 1.458033e-03	k: 480	n:360000
KS ci ratio: 2.358504e-02	ci left: 7.042557e-02	ci right 7.210912e-02	k: 25655	n:360000
TP53   360000 perm   108 sec   (3341 perm/sec)   p_kst 7.126389e-02   p_cons 1.333333e-03   p_joint 4.002778e-03

Joint ci ratio: 1.037527e-01	ci left: 3.643783e-03	ci right 4.045130e-03	k: 1421	n:370000
Cons ci ratio: 1.758949e-01	ci left: 1.222632e-03	ci right 1.460963e-03	k: 495	n:370000
KS ci ratio: 2.325544e-02	ci left: 7.048631e-02	ci right 7.214744e-02	k: 26386	n:370000
TP53   370000 perm   112 sec   (3305 perm/sec)   p_kst 7.131351e-02   p_cons 1.337838e-03   p_joint 3.840541e-03

Joint ci ratio: 1.083678e-01	ci left: 3.245565e-03	ci right 3.619965e-03	k: 1303	n:380000
Cons ci ratio: 1.729551e-01	ci left: 1.233242e-03	ci right 1.469204e-03	k: 512	n:380000
KS ci ratio: 2.293928e-02	ci left: 7.054400e-02	ci right 7.218360e-02	k: 27117	n:380000
TP53   380000 perm   116 sec   (3266 perm/sec)   p_kst 7.136053e-02   p_cons 1.347368e-03   p_joint 3.428947e-03

Joint ci ratio: 1.069020e-01	ci left: 3.252168e-03	ci right 3.621937e-03	k: 1339	n:390000
Cons ci ratio: 1.703189e-01	ci left: 1.240884e-03	ci right 1.474318e-03	k: 528	n:390000
KS ci ratio: 2.264749e-02	ci left: 7.053001e-02	ci right 7.214816e-02	k: 27821	n:390000
TP53   390000 perm   121 sec   (3225 perm/sec)   p_kst 7.133590e-02   p_cons 1.353846e-03   p_joint 3.433333e-03

Joint ci ratio: 1.028286e-01	ci left: 3.433801e-03	ci right 3.808446e-03	k: 1447	n:400000
Cons ci ratio: 1.769788e-01	ci left: 1.116591e-03	ci right 1.335737e-03	k: 489	n:400000
KS ci ratio: 2.237079e-02	ci left: 7.049198e-02	ci right 7.208924e-02	k: 28515	n:400000
TP53   400000 perm   125 sec   (3191 perm/sec)   p_kst 7.128750e-02   p_cons 1.222500e-03   p_joint 3.617500e-03

Joint ci ratio: 1.015394e-01	ci left: 3.437988e-03	ci right 3.808106e-03	k: 1484	n:410000
Cons ci ratio: 1.748508e-01	ci left: 1.117337e-03	ci right 1.333713e-03	k: 501	n:410000
KS ci ratio: 2.209503e-02	ci left: 7.050930e-02	ci right 7.208701e-02	k: 29231	n:410000
TP53   410000 perm   130 sec   (3157 perm/sec)   p_kst 7.129512e-02   p_cons 1.221951e-03   p_joint 3.619512e-03

Joint ci ratio: 1.006966e-01	ci left: 3.414147e-03	ci right 3.778468e-03	k: 1509	n:420000
Cons ci ratio: 1.734749e-01	ci left: 1.108951e-03	ci right 1.321836e-03	k: 509	n:420000
KS ci ratio: 2.183237e-02	ci left: 7.050696e-02	ci right 7.206563e-02	k: 29939	n:420000
TP53   420000 perm   134 sec   (3124 perm/sec)   p_kst 7.128333e-02   p_cons 1.211905e-03   p_joint 3.592857e-03

Joint ci ratio: 9.942056e-02	ci left: 3.423177e-03	ci right 3.783563e-03	k: 1548	n:430000
Cons ci ratio: 1.706530e-01	ci left: 1.120994e-03	ci right 1.332331e-03	k: 526	n:430000
KS ci ratio: 2.156976e-02	ci left: 7.056037e-02	ci right 7.210122e-02	k: 30671	n:430000
TP53   430000 perm   139 sec   (3092 perm/sec)   p_kst 7.132791e-02   p_cons 1.223256e-03   p_joint 3.600000e-03

Joint ci ratio: 9.884993e-02	ci left: 3.385269e-03	ci right 3.739500e-03	k: 1566	n:440000
Cons ci ratio: 1.690570e-01	ci left: 1.117278e-03	ci right 1.325743e-03	k: 536	n:440000
KS ci ratio: 2.131713e-02	ci left: 7.060694e-02	ci right 7.213053e-02	k: 31401	n:440000
TP53   440000 perm   144 sec   (3060 perm/sec)   p_kst 7.136591e-02   p_cons 1.218182e-03   p_joint 3.559091e-03

Joint ci ratio: 9.770303e-02	ci left: 3.390243e-03	ci right 3.740642e-03	k: 1603	n:450000
Cons ci ratio: 1.671993e-01	ci left: 1.117994e-03	ci right 1.324070e-03	k: 548	n:450000
KS ci ratio: 2.106965e-02	ci left: 7.067365e-02	ci right 7.218076e-02	k: 32141	n:450000
TP53   450000 perm   149 sec   (3029 perm/sec)   p_kst 7.142444e-02   p_cons 1.217778e-03   p_joint 3.562222e-03

Joint ci ratio: 9.752396e-02	ci left: 3.329262e-03	ci right 3.672691e-03	k: 1609	n:460000
Cons ci ratio: 1.654014e-01	ci left: 1.118691e-03	ci right 1.322457e-03	k: 560	n:460000
KS ci ratio: 2.083776e-02	ci left: 7.069213e-02	ci right 7.218284e-02	k: 32860	n:460000
TP53   460000 perm   154 sec   (2993 perm/sec)   p_kst 7.143478e-02   p_cons 1.217391e-03   p_joint 3.497826e-03

Joint ci ratio: 1.004162e-01	ci left: 3.069580e-03	ci right 3.396166e-03	k: 1518	n:470000
Cons ci ratio: 1.640910e-01	ci left: 1.113248e-03	ci right 1.314258e-03	k: 569	n:470000
KS ci ratio: 2.060246e-02	ci left: 7.077978e-02	ci right 7.225529e-02	k: 33612	n:470000
TP53   470000 perm   159 sec   (2958 perm/sec)   p_kst 7.151489e-02   p_cons 1.210638e-03   p_joint 3.229787e-03

Joint ci ratio: 9.931073e-02	ci left: 3.074695e-03	ci right 3.398014e-03	k: 1552	n:480000
Cons ci ratio: 1.621119e-01	ci left: 1.118032e-03	ci right 1.317234e-03	k: 583	n:480000
KS ci ratio: 2.039637e-02	ci left: 7.072495e-02	ci right 7.218440e-02	k: 34297	n:480000
TP53   480000 perm   164 sec   (2928 perm/sec)   p_kst 7.145208e-02   p_cons 1.214583e-03   p_joint 3.233333e-03

Joint ci ratio: 9.855299e-02	ci left: 3.059713e-03	ci right 3.378859e-03	k: 1576	n:490000
Cons ci ratio: 1.603370e-01	ci left: 1.120675e-03	ci right 1.317951e-03	k: 596	n:490000
KS ci ratio: 2.018983e-02	ci left: 7.071508e-02	ci right 7.215938e-02	k: 35003	n:490000
TP53   490000 perm   169 sec   (2900 perm/sec)   p_kst 7.143469e-02   p_cons 1.216327e-03   p_joint 3.216327e-03

Joint ci ratio: 9.768996e-02	ci left: 3.053144e-03	ci right 3.368656e-03	k: 1604	n:500000
Cons ci ratio: 1.590111e-01	ci left: 1.117463e-03	ci right 1.312391e-03	k: 606	n:500000
KS ci ratio: 1.999516e-02	ci left: 7.066786e-02	ci right 7.209711e-02	k: 35690	n:500000
TP53   500000 perm   174 sec   (2867 perm/sec)   p_kst 7.138000e-02   p_cons 1.212000e-03   p_joint 3.208000e-03

Joint ci ratio: 9.696844e-02	ci left: 3.039190e-03	ci right 3.350809e-03	k: 1628	n:510000
Cons ci ratio: 1.577176e-01	ci left: 1.114382e-03	ci right 1.307042e-03	k: 616	n:510000
KS ci ratio: 1.980690e-02	ci left: 7.061670e-02	ci right 7.203131e-02	k: 36374	n:510000
TP53   510000 perm   180 sec   (2836 perm/sec)   p_kst 7.132157e-02   p_cons 1.207843e-03   p_joint 3.192157e-03

Joint ci ratio: 9.640904e-02	ci left: 3.016398e-03	ci right 3.323795e-03	k: 1647	n:520000
Cons ci ratio: 1.565802e-01	ci left: 1.109579e-03	ci right 1.299895e-03	k: 625	n:520000
KS ci ratio: 1.960051e-02	ci left: 7.072454e-02	ci right 7.212639e-02	k: 37140	n:520000
TP53   520000 perm   185 sec   (2808 perm/sec)   p_kst 7.142308e-02   p_cons 1.201923e-03   p_joint 3.167308e-03

Joint ci ratio: 9.568661e-02	ci left: 3.005520e-03	ci right 3.309385e-03	k: 1672	n:530000
Cons ci ratio: 1.549791e-01	ci left: 1.112216e-03	ci right 1.300852e-03	k: 638	n:530000
KS ci ratio: 1.941562e-02	ci left: 7.072508e-02	ci right 7.211357e-02	k: 37851	n:530000
TP53   530000 perm   191 sec   (2781 perm/sec)   p_kst 7.141698e-02   p_cons 1.203774e-03   p_joint 3.154717e-03

Joint ci ratio: 9.703684e-02	ci left: 2.866720e-03	ci right 3.160874e-03	k: 1626	n:540000
Cons ci ratio: 1.536623e-01	ci left: 1.111203e-03	ci right 1.297919e-03	k: 649	n:540000
KS ci ratio: 1.923022e-02	ci left: 7.076438e-02	ci right 7.214022e-02	k: 38583	n:540000
TP53   540000 perm   196 sec   (2754 perm/sec)   p_kst 7.145000e-02   p_cons 1.201852e-03   p_joint 3.011111e-03

Joint ci ratio: 9.835168e-02	ci left: 2.738318e-03	ci right 3.023323e-03	k: 1583	n:550000
Cons ci ratio: 1.526099e-01	ci left: 1.106735e-03	ci right 1.291311e-03	k: 658	n:550000
KS ci ratio: 1.906623e-02	ci left: 7.069007e-02	ci right 7.205263e-02	k: 39253	n:550000
TP53   550000 perm   202 sec   (2726 perm/sec)   p_kst 7.136909e-02   p_cons 1.196364e-03   p_joint 2.878182e-03

Joint ci ratio: 9.731238e-02	ci left: 2.748648e-03	ci right 3.031533e-03	k: 1617	n:560000
Cons ci ratio: 1.512391e-01	ci left: 1.107586e-03	ci right 1.290494e-03	k: 670	n:560000
KS ci ratio: 1.889287e-02	ci left: 7.071270e-02	ci right 7.206316e-02	k: 39976	n:560000
TP53   560000 perm   208 sec   (2698 perm/sec)   p_kst 7.138571e-02   p_cons 1.196429e-03   p_joint 2.887500e-03

Joint ci ratio: 9.857533e-02	ci left: 2.630251e-03	ci right 2.904666e-03	k: 1576	n:570000
Cons ci ratio: 1.505682e-01	ci left: 1.098283e-03	ci right 1.278778e-03	k: 676	n:570000
KS ci ratio: 1.871746e-02	ci left: 7.078175e-02	ci right 7.212085e-02	k: 40726	n:570000
TP53   570000 perm   213 sec   (2673 perm/sec)   p_kst 7.144912e-02   p_cons 1.185965e-03   p_joint 2.764912e-03

Joint ci ratio: 8.561167e-02	ci left: 3.447487e-03	ci right 3.757504e-03	k: 2088	n:580000
Cons ci ratio: 1.482848e-01	ci left: 1.114201e-03	ci right 1.294289e-03	k: 697	n:580000
KS ci ratio: 1.855842e-02	ci left: 7.076608e-02	ci right 7.209338e-02	k: 41428	n:580000
TP53   580000 perm   219 sec   (2648 perm/sec)   p_kst 7.142759e-02   p_cons 1.201724e-03   p_joint 3.600000e-03

Joint ci ratio: 8.607031e-02	ci left: 3.352560e-03	ci right 3.655737e-03	k: 2066	n:590000
Cons ci ratio: 1.470263e-01	ci left: 1.114904e-03	ci right 1.293441e-03	k: 709	n:590000
KS ci ratio: 1.840054e-02	ci left: 7.077123e-02	ci right 7.208722e-02	k: 42142	n:590000
TP53   590000 perm   225 sec   (2625 perm/sec)   p_kst 7.142712e-02   p_cons 1.201695e-03   p_joint 3.501695e-03

Joint ci ratio: 8.539151e-02	ci left: 3.350505e-03	ci right 3.650988e-03	k: 2099	n:600000
Cons ci ratio: 1.454970e-01	ci left: 1.120408e-03	ci right 1.297798e-03	k: 724	n:600000
KS ci ratio: 1.824571e-02	ci left: 7.078290e-02	ci right 7.208791e-02	k: 42860	n:600000
TP53   600000 perm   231 sec   (2601 perm/sec)   p_kst 7.143333e-02   p_cons 1.206667e-03   p_joint 3.498333e-03

Joint ci ratio: 8.468869e-02	ci left: 3.351735e-03	ci right 3.649732e-03	k: 2134	n:610000
Cons ci ratio: 1.438201e-01	ci left: 1.128901e-03	ci right 1.305399e-03	k: 741	n:610000
KS ci ratio: 1.809696e-02	ci left: 7.077790e-02	ci right 7.207207e-02	k: 43568	n:610000
TP53   610000 perm   237 sec   (2578 perm/sec)   p_kst 7.142295e-02   p_cons 1.214754e-03   p_joint 3.498361e-03

Joint ci ratio: 8.620326e-02	ci left: 3.180858e-03	ci right 3.468975e-03	k: 2060	n:620000
Cons ci ratio: 1.428609e-01	ci left: 1.126243e-03	ci right 1.301051e-03	k: 751	n:620000
KS ci ratio: 1.794938e-02	ci left: 7.079078e-02	ci right 7.207452e-02	k: 44287	n:620000
TP53   620000 perm   243 sec   (2555 perm/sec)   p_kst 7.143065e-02   p_cons 1.211290e-03   p_joint 3.322581e-03

Joint ci ratio: 8.791231e-02	ci left: 3.007690e-03	ci right 3.285799e-03	k: 1981	n:630000
Cons ci ratio: 1.416417e-01	ci left: 1.128267e-03	ci right 1.301769e-03	k: 764	n:630000
KS ci ratio: 1.780792e-02	ci left: 7.078432e-02	ci right 7.205772e-02	k: 44994	n:630000
TP53   630000 perm   249 sec   (2534 perm/sec)   p_kst 7.141905e-02   p_cons 1.212698e-03   p_joint 3.144444e-03

Joint ci ratio: 8.911773e-02	ci left: 2.879707e-03	ci right 3.149823e-03	k: 1928	n:640000
Cons ci ratio: 1.405437e-01	ci left: 1.128726e-03	ci right 1.300840e-03	k: 776	n:640000
KS ci ratio: 1.767495e-02	ci left: 7.073919e-02	ci right 7.200219e-02	k: 45676	n:640000
TP53   640000 perm   255 sec   (2512 perm/sec)   p_kst 7.136875e-02   p_cons 1.212500e-03   p_joint 3.012500e-03

Joint ci ratio: 6.402615e-02	ci left: 5.550214e-03	ci right 5.918828e-03	k: 3726	n:650000
Cons ci ratio: 1.391182e-01	ci left: 1.135116e-03	ci right 1.306303e-03	k: 792	n:650000
KS ci ratio: 1.780688e-02	ci left: 6.876496e-02	ci right 7.000196e-02	k: 45098	n:650000
TP53   650000 perm   261 sec   (2489 perm/sec)   p_kst 6.938154e-02   p_cons 1.218462e-03   p_joint 5.732308e-03

Joint ci ratio: 6.382261e-02	ci left: 5.501898e-03	ci right 5.866098e-03	k: 3750	n:660000
Cons ci ratio: 1.380775e-01	ci left: 1.135468e-03	ci right 1.305322e-03	k: 804	n:660000
KS ci ratio: 1.766045e-02	ci left: 6.884989e-02	ci right 7.007813e-02	k: 45845	n:660000
TP53   660000 perm   267 sec   (2468 perm/sec)   p_kst 6.946212e-02   p_cons 1.218182e-03   p_joint 5.681818e-03

Joint ci ratio: 6.369738e-02	ci left: 5.441806e-03	ci right 5.801295e-03	k: 3765	n:670000
Cons ci ratio: 1.372280e-01	ci left: 1.132932e-03	ci right 1.301279e-03	k: 814	n:670000
KS ci ratio: 1.753051e-02	ci left: 6.883719e-02	ci right 7.005608e-02	k: 46528	n:670000
TP53   670000 perm   274 sec   (2447 perm/sec)   p_kst 6.944478e-02   p_cons 1.214925e-03   p_joint 5.619403e-03

Joint ci ratio: 6.353906e-02	ci left: 5.389271e-03	ci right 5.744373e-03	k: 3784	n:680000
Cons ci ratio: 1.363113e-01	ci left: 1.131894e-03	ci right 1.298872e-03	k: 825	n:680000
KS ci ratio: 1.740559e-02	ci left: 6.880879e-02	ci right 7.001841e-02	k: 47200	n:680000
TP53   680000 perm   280 sec   (2425 perm/sec)   p_kst 6.941176e-02   p_cons 1.213235e-03   p_joint 5.564706e-03

Joint ci ratio: 6.308241e-02	ci left: 5.389614e-03	ci right 5.742093e-03	k: 3839	n:690000
Cons ci ratio: 1.352510e-01	ci left: 1.133691e-03	ci right 1.299528e-03	k: 838	n:690000
KS ci ratio: 1.728348e-02	ci left: 6.877980e-02	ci right 6.998034e-02	k: 47871	n:690000
TP53   690000 perm   287 sec   (2404 perm/sec)   p_kst 6.937826e-02   p_cons 1.214493e-03   p_joint 5.563768e-03

Joint ci ratio: 6.294499e-02	ci left: 5.336518e-03	ci right 5.684736e-03	k: 3856	n:700000
Cons ci ratio: 1.341363e-01	ci left: 1.136821e-03	ci right 1.301637e-03	k: 852	n:700000
KS ci ratio: 1.715689e-02	ci left: 6.880431e-02	ci right 6.999640e-02	k: 48579	n:700000
TP53   700000 perm   294 sec   (2381 perm/sec)   p_kst 6.939857e-02   p_cons 1.217143e-03   p_joint 5.508571e-03

Joint ci ratio: 5.776788e-02	ci left: 6.257470e-03	ci right 6.631081e-03	k: 4574	n:710000
Cons ci ratio: 1.330488e-01	ci left: 1.139869e-03	ci right 1.303681e-03	k: 866	n:710000
KS ci ratio: 1.703360e-02	ci left: 6.882396e-02	ci right 7.000773e-02	k: 49284	n:710000
TP53   710000 perm   301 sec   (2362 perm/sec)   p_kst 6.941408e-02   p_cons 1.219718e-03   p_joint 6.442254e-03

Joint ci ratio: 5.835746e-02	ci left: 6.045988e-03	ci right 6.410780e-03	k: 4483	n:720000
Cons ci ratio: 1.319123e-01	ci left: 1.144181e-03	ci right 1.307097e-03	k: 881	n:720000
KS ci ratio: 1.691474e-02	ci left: 6.882925e-02	ci right 7.000477e-02	k: 49979	n:720000
TP53   720000 perm   307 sec   (2343 perm/sec)   p_kst 6.941528e-02   p_cons 1.223611e-03   p_joint 6.226389e-03

Joint ci ratio: 5.978516e-02	ci left: 5.679711e-03	ci right 6.031077e-03	k: 4273	n:730000
Cons ci ratio: 1.310975e-01	ci left: 1.143080e-03	ci right 1.304756e-03	k: 892	n:730000
KS ci ratio: 1.680333e-02	ci left: 6.879622e-02	ci right 6.996336e-02	k: 50646	n:730000
TP53   730000 perm   314 sec   (2324 perm/sec)   p_kst 6.937808e-02   p_cons 1.221918e-03   p_joint 5.853425e-03

Joint ci ratio: 5.808932e-02	ci left: 5.938504e-03	ci right 6.295109e-03	k: 4525	n:740000
Cons ci ratio: 1.305871e-01	ci left: 1.136782e-03	ci right 1.296893e-03	k: 899	n:740000
KS ci ratio: 1.668256e-02	ci left: 6.885295e-02	ci right 7.001258e-02	k: 51379	n:740000
TP53   740000 perm   321 sec   (2305 perm/sec)   p_kst 6.943108e-02   p_cons 1.214865e-03   p_joint 6.114865e-03

Joint ci ratio: 5.769546e-02	ci left: 5.940794e-03	ci right 6.295037e-03	k: 4587	n:750000
Cons ci ratio: 1.293706e-01	ci left: 1.143555e-03	ci right 1.303004e-03	k: 916	n:750000
KS ci ratio: 1.657479e-02	ci left: 6.882718e-02	ci right 6.997882e-02	k: 52051	n:750000
TP53   750000 perm   328 sec   (2287 perm/sec)   p_kst 6.940133e-02   p_cons 1.221333e-03   p_joint 6.116000e-03

Joint ci ratio: 5.732191e-02	ci left: 5.940438e-03	ci right 6.292290e-03	k: 4647	n:760000
Cons ci ratio: 1.285323e-01	ci left: 1.143788e-03	ci right 1.302158e-03	k: 928	n:760000
KS ci ratio: 1.646170e-02	ci left: 6.885978e-02	ci right 7.000403e-02	k: 52767	n:760000
TP53   760000 perm   335 sec   (2270 perm/sec)   p_kst 6.943026e-02   p_cons 1.221053e-03   p_joint 6.114474e-03

Joint ci ratio: 5.691903e-02	ci left: 5.947780e-03	ci right 6.297510e-03	k: 4713	n:770000
Cons ci ratio: 1.276423e-01	ci left: 1.145276e-03	ci right 1.302670e-03	k: 941	n:770000
KS ci ratio: 1.635385e-02	ci left: 6.886828e-02	ci right 7.000510e-02	k: 53465	n:770000
TP53   770000 perm   342 sec   (2253 perm/sec)   p_kst 6.943506e-02   p_cons 1.222078e-03   p_joint 6.120779e-03

Joint ci ratio: 5.686064e-02	ci left: 5.884159e-03	ci right 6.229781e-03	k: 4723	n:780000
Cons ci ratio: 1.274403e-01	ci left: 1.134316e-03	ci right 1.289939e-03	k: 944	n:780000
KS ci ratio: 1.623747e-02	ci left: 6.896087e-02	ci right 7.009105e-02	k: 54229	n:780000
TP53   780000 perm   349 sec   (2236 perm/sec)   p_kst 6.952436e-02   p_cons 1.210256e-03   p_joint 6.055128e-03

Joint ci ratio: 5.652080e-02	ci left: 5.880805e-03	ci right 6.224098e-03	k: 4780	n:790000
Cons ci ratio: 1.266387e-01	ci left: 1.134665e-03	ci right 1.289283e-03	k: 956	n:790000
KS ci ratio: 1.613820e-02	ci left: 6.893387e-02	ci right 7.005663e-02	k: 54900	n:790000
TP53   790000 perm   356 sec   (2219 perm/sec)   p_kst 6.949367e-02   p_cons 1.210127e-03   p_joint 6.050633e-03

Joint ci ratio: 5.611118e-02	ci left: 5.893564e-03	ci right 6.235028e-03	k: 4850	n:800000
Cons ci ratio: 1.255929e-01	ci left: 1.139851e-03	ci right 1.293797e-03	k: 972	n:800000
KS ci ratio: 1.604306e-02	ci left: 6.888888e-02	ci right 7.000424e-02	k: 55556	n:800000
TP53   800000 perm   364 sec   (2200 perm/sec)   p_kst 6.944500e-02   p_cons 1.215000e-03   p_joint 6.062500e-03

Joint ci ratio: 5.576167e-02	ci left: 5.895059e-03	ci right 6.234414e-03	k: 4911	n:810000
Cons ci ratio: 1.252079e-01	ci left: 1.132953e-03	ci right 1.285464e-03	k: 978	n:810000
KS ci ratio: 1.594212e-02	ci left: 6.890530e-02	ci right 7.001383e-02	k: 56261	n:810000
TP53   810000 perm   371 sec   (2184 perm/sec)   p_kst 6.945802e-02   p_cons 1.207407e-03   p_joint 6.062963e-03

Joint ci ratio: 5.286384e-02	ci left: 6.484848e-03	ci right 6.838163e-03	k: 5461	n:820000
Cons ci ratio: 1.248265e-01	ci left: 1.126225e-03	ci right 1.277334e-03	k: 984	n:820000
KS ci ratio: 1.584500e-02	ci left: 6.890554e-02	ci right 7.000726e-02	k: 56953	n:820000
TP53   820000 perm   378 sec   (2167 perm/sec)   p_kst 6.945488e-02   p_cons 1.200000e-03   p_joint 6.659756e-03

Joint ci ratio: 5.292942e-02	ci left: 6.391253e-03	ci right 6.739915e-03	k: 5448	n:830000
Cons ci ratio: 1.243857e-01	ci left: 1.120827e-03	ci right 1.270641e-03	k: 991	n:830000
KS ci ratio: 1.575492e-02	ci left: 6.886258e-02	ci right 6.995730e-02	k: 57609	n:830000
TP53   830000 perm   386 sec   (2151 perm/sec)   p_kst 6.940843e-02   p_cons 1.193976e-03   p_joint 6.563855e-03

Joint ci ratio: 5.280485e-02	ci left: 6.345706e-03	ci right 6.691043e-03	k: 5474	n:840000
Cons ci ratio: 1.237636e-01	ci left: 1.119019e-03	ci right 1.267789e-03	k: 1001	n:840000
KS ci ratio: 1.565856e-02	ci left: 6.888471e-02	ci right 6.997302e-02	k: 58319	n:840000
TP53   840000 perm   394 sec   (2135 perm/sec)   p_kst 6.942738e-02   p_cons 1.191667e-03   p_joint 6.516667e-03

Joint ci ratio: 5.248939e-02	ci left: 6.347676e-03	ci right 6.690994e-03	k: 5540	n:850000
Cons ci ratio: 1.232117e-01	ci left: 1.116115e-03	ci right 1.263789e-03	k: 1010	n:850000
KS ci ratio: 1.556920e-02	ci left: 6.886297e-02	ci right 6.994467e-02	k: 58992	n:850000
TP53   850000 perm   401 sec   (2119 perm/sec)   p_kst 6.940235e-02   p_cons 1.188235e-03   p_joint 6.517647e-03

Joint ci ratio: 5.264942e-02	ci left: 6.235989e-03	ci right 6.574326e-03	k: 5507	n:860000
Cons ci ratio: 1.227273e-01	ci left: 1.112153e-03	ci right 1.258682e-03	k: 1018	n:860000
KS ci ratio: 1.547285e-02	ci left: 6.891243e-02	ci right 6.998815e-02	k: 59726	n:860000
TP53   860000 perm   409 sec   (2102 perm/sec)   p_kst 6.944884e-02   p_cons 1.183721e-03   p_joint 6.403488e-03

Joint ci ratio: 5.236511e-02	ci left: 6.232370e-03	ci right 6.568630e-03	k: 5567	n:870000
Cons ci ratio: 1.222487e-01	ci left: 1.108283e-03	ci right 1.253692e-03	k: 1026	n:870000
KS ci ratio: 1.537936e-02	ci left: 6.895160e-02	ci right 7.002138e-02	k: 60452	n:870000
TP53   870000 perm   417 sec   (2088 perm/sec)   p_kst 6.948506e-02   p_cons 1.179310e-03   p_joint 6.398851e-03

Joint ci ratio: 5.197856e-02	ci left: 6.254638e-03	ci right 6.589533e-03	k: 5650	n:880000
Cons ci ratio: 1.213653e-01	ci left: 1.112215e-03	ci right 1.257010e-03	k: 1041	n:880000
KS ci ratio: 1.528768e-02	ci left: 6.898878e-02	ci right 7.005269e-02	k: 61177	n:880000
TP53   880000 perm   425 sec   (2073 perm/sec)   p_kst 6.951932e-02   p_cons 1.182955e-03   p_joint 6.420455e-03

Joint ci ratio: 5.216190e-02	ci left: 6.141102e-03	ci right 6.471112e-03	k: 5611	n:890000
Cons ci ratio: 1.204439e-01	ci left: 1.117152e-03	ci right 1.261407e-03	k: 1057	n:890000
KS ci ratio: 1.520369e-02	ci left: 6.897363e-02	ci right 7.003142e-02	k: 61856	n:890000
TP53   890000 perm   433 sec   (2056 perm/sec)   p_kst 6.950112e-02   p_cons 1.187640e-03   p_joint 6.304494e-03

Joint ci ratio: 5.177525e-02	ci left: 6.164990e-03	ci right 6.493755e-03	k: 5695	n:900000
Cons ci ratio: 1.195431e-01	ci left: 1.121984e-03	ci right 1.265702e-03	k: 1073	n:900000
KS ci ratio: 1.511705e-02	ci left: 6.899316e-02	ci right 7.004517e-02	k: 62566	n:900000
TP53   900000 perm   441 sec   (2041 perm/sec)   p_kst 6.951778e-02   p_cons 1.192222e-03   p_joint 6.327778e-03

Joint ci ratio: 5.242465e-02	ci left: 5.946468e-03	ci right 6.267677e-03	k: 5556	n:910000
Cons ci ratio: 1.187167e-01	ci left: 1.125647e-03	ci right 1.268767e-03	k: 1088	n:910000
KS ci ratio: 1.502817e-02	ci left: 6.904404e-02	ci right 7.009057e-02	k: 63305	n:910000
TP53   910000 perm   449 sec   (2026 perm/sec)   p_kst 6.956593e-02   p_cons 1.195604e-03   p_joint 6.105495e-03

Joint ci ratio: 5.213459e-02	ci left: 5.948343e-03	ci right 6.267822e-03	k: 5618	n:920000
Cons ci ratio: 1.181217e-01	ci left: 1.125014e-03	ci right 1.267287e-03	k: 1099	n:920000
KS ci ratio: 1.494547e-02	ci left: 6.905374e-02	ci right 7.009462e-02	k: 64007	n:920000
TP53   920000 perm   457 sec   (2011 perm/sec)   p_kst 6.957283e-02   p_cons 1.194565e-03   p_joint 6.106522e-03

Joint ci ratio: 5.217370e-02	ci left: 5.875887e-03	ci right 6.191718e-03	k: 5610	n:930000
Cons ci ratio: 1.179080e-01	ci left: 1.117091e-03	ci right 1.258089e-03	k: 1103	n:930000
KS ci ratio: 1.486314e-02	ci left: 6.907183e-02	ci right 7.010720e-02	k: 64717	n:930000
TP53   930000 perm   466 sec   (1997 perm/sec)   p_kst 6.958817e-02   p_cons 1.186022e-03   p_joint 6.032258e-03

Joint ci ratio: 5.134424e-02	ci left: 6.004499e-03	ci right 6.321960e-03	k: 5792	n:940000
Cons ci ratio: 1.173777e-01	ci left: 1.115532e-03	ci right 1.255656e-03	k: 1113	n:940000
KS ci ratio: 1.478483e-02	ci left: 6.906622e-02	ci right 7.009600e-02	k: 65405	n:940000
TP53   940000 perm   474 sec   (1983 perm/sec)   p_kst 6.957979e-02   p_cons 1.184043e-03   p_joint 6.161702e-03

Joint ci ratio: 5.116847e-02	ci left: 5.982857e-03	ci right 6.298060e-03	k: 5832	n:950000
Cons ci ratio: 1.168025e-01	ci left: 1.115029e-03	ci right 1.254357e-03	k: 1124	n:950000
KS ci ratio: 1.470978e-02	ci left: 6.904292e-02	ci right 7.006708e-02	k: 66076	n:950000
TP53   950000 perm   483 sec   (1968 perm/sec)   p_kst 6.955368e-02   p_cons 1.183158e-03   p_joint 6.138947e-03

Joint ci ratio: 5.093781e-02	ci left: 5.975039e-03	ci right 6.288369e-03	k: 5885	n:960000
Cons ci ratio: 1.161845e-01	ci left: 1.115550e-03	ci right 1.254154e-03	k: 1136	n:960000
KS ci ratio: 1.463091e-02	ci left: 6.906371e-02	ci right 7.008264e-02	k: 66789	n:960000
TP53   960000 perm   491 sec   (1954 perm/sec)   p_kst 6.957188e-02   p_cons 1.183333e-03   p_joint 6.130208e-03

Joint ci ratio: 5.064164e-02	ci left: 5.983672e-03	ci right 6.295577e-03	k: 5954	n:970000
Cons ci ratio: 1.153753e-01	ci left: 1.120067e-03	ci right 1.258197e-03	k: 1152	n:970000
KS ci ratio: 1.455445e-02	ci left: 6.907381e-02	ci right 7.008752e-02	k: 67492	n:970000
TP53   970000 perm   500 sec   (1940 perm/sec)   p_kst 6.957938e-02   p_cons 1.187629e-03   p_joint 6.138144e-03

Joint ci ratio: 4.976786e-02	ci left: 6.134221e-03	ci right 6.448299e-03	k: 6164	n:980000
Cons ci ratio: 1.143870e-01	ci left: 1.128460e-03	ci right 1.266352e-03	k: 1172	n:980000
KS ci ratio: 1.448409e-02	ci left: 6.903999e-02	ci right 7.004827e-02	k: 68152	n:980000
TP53   980000 perm   509 sec   (1926 perm/sec)   p_kst 6.954286e-02   p_cons 1.195918e-03   p_joint 6.289796e-03

Joint ci ratio: 4.959168e-02	ci left: 6.116151e-03	ci right 6.428163e-03	k: 6208	n:990000
Cons ci ratio: 1.138064e-01	ci left: 1.128836e-03	ci right 1.266028e-03	k: 1184	n:990000
KS ci ratio: 1.440799e-02	ci left: 6.906727e-02	ci right 7.007060e-02	k: 68872	n:990000
TP53   990000 perm   518 sec   (1913 perm/sec)   p_kst 6.956768e-02   p_cons 1.195960e-03   p_joint 6.270707e-03

Joint ci ratio: 4.945717e-02	ci left: 6.088566e-03	ci right 6.398304e-03	k: 6242	n:1000000
Cons ci ratio: 1.133768e-01	ci left: 1.126292e-03	ci right 1.262623e-03	k: 1193	n:1000000
KS ci ratio: 1.433718e-02	ci left: 6.905714e-02	ci right 7.005535e-02	k: 69555	n:1000000
TP53   1000000 perm   526 sec   (1900 perm/sec)   p_kst 6.955500e-02   p_cons 1.193000e-03   p_joint 6.242000e-03

Joint ci ratio: 4.922127e-02	ci left: 6.086956e-03	ci right 6.395094e-03	k: 6302	n:1010000
Cons ci ratio: 1.126245e-01	ci left: 1.130535e-03	ci right 1.266411e-03	k: 1209	n:1010000
KS ci ratio: 1.426838e-02	ci left: 6.903834e-02	ci right 7.003146e-02	k: 70229	n:1010000
TP53   1010000 perm   535 sec   (1888 perm/sec)   p_kst 6.953366e-02   p_cons 1.197030e-03   p_joint 6.239604e-03

Joint ci ratio: 4.896549e-02	ci left: 6.091192e-03	ci right 6.397897e-03	k: 6368	n:1020000
Cons ci ratio: 1.119784e-01	ci left: 1.132791e-03	ci right 1.268106e-03	k: 1223	n:1020000
KS ci ratio: 1.420110e-02	ci left: 6.901504e-02	ci right 7.000310e-02	k: 70898	n:1020000
TP53   1020000 perm   544 sec   (1875 perm/sec)   p_kst 6.950784e-02   p_cons 1.199020e-03   p_joint 6.243137e-03

Joint ci ratio: 4.722969e-02	ci left: 6.486746e-03	ci right 6.801475e-03	k: 6842	n:1030000
Cons ci ratio: 1.113434e-01	ci left: 1.135006e-03	ci right 1.269766e-03	k: 1237	n:1030000
KS ci ratio: 1.412978e-02	ci left: 6.903768e-02	ci right 7.002106e-02	k: 71614	n:1030000
TP53   1030000 perm   553 sec   (1863 perm/sec)   p_kst 6.952816e-02   p_cons 1.200971e-03   p_joint 6.642718e-03

Joint ci ratio: 4.699673e-02	ci left: 6.488988e-03	ci right 6.802231e-03	k: 6910	n:1040000
Cons ci ratio: 1.111196e-01	ci left: 1.128766e-03	ci right 1.262498e-03	k: 1242	n:1040000
KS ci ratio: 1.406391e-02	ci left: 6.901964e-02	ci right 6.999814e-02	k: 72288	n:1040000
TP53   1040000 perm   562 sec   (1850 perm/sec)   p_kst 6.950769e-02   p_cons 1.194231e-03   p_joint 6.644231e-03

Joint ci ratio: 4.721881e-02	ci left: 6.366944e-03	ci right 6.675787e-03	k: 6846	n:1050000
Cons ci ratio: 1.106754e-01	ci left: 1.127276e-03	ci right 1.260262e-03	k: 1252	n:1050000
KS ci ratio: 1.399215e-02	ci left: 6.906461e-02	ci right 7.003872e-02	k: 73028	n:1050000
TP53   1050000 perm   571 sec   (1838 perm/sec)   p_kst 6.955048e-02   p_cons 1.192381e-03   p_joint 6.520000e-03

Joint ci ratio: 4.700312e-02	ci left: 6.365613e-03	ci right 6.672942e-03	k: 6909	n:1060000
Cons ci ratio: 1.099752e-01	ci left: 1.131319e-03	ci right 1.263884e-03	k: 1268	n:1060000
KS ci ratio: 1.392503e-02	ci left: 6.907584e-02	ci right 7.004539e-02	k: 73733	n:1060000
TP53   1060000 perm   580 sec   (1827 perm/sec)   p_kst 6.955943e-02   p_cons 1.196226e-03   p_joint 6.517925e-03

Joint ci ratio: 4.678022e-02	ci left: 6.367080e-03	ci right 6.672984e-03	k: 6975	n:1070000
Cons ci ratio: 1.094589e-01	ci left: 1.131653e-03	ci right 1.263594e-03	k: 1280	n:1070000
KS ci ratio: 1.385437e-02	ci left: 6.912878e-02	ci right 7.009411e-02	k: 74483	n:1070000
TP53   1070000 perm   590 sec   (1814 perm/sec)   p_kst 6.961028e-02   p_cons 1.196262e-03   p_joint 6.518692e-03

Joint ci ratio: 4.656713e-02	ci left: 6.366693e-03	ci right 6.671148e-03	k: 7039	n:1080000
Cons ci ratio: 1.089920e-01	ci left: 1.131082e-03	ci right 1.262358e-03	k: 1291	n:1080000
KS ci ratio: 1.379078e-02	ci left: 6.912446e-02	ci right 7.008526e-02	k: 75172	n:1080000
TP53   1080000 perm   599 sec   (1803 perm/sec)   p_kst 6.960370e-02   p_cons 1.195370e-03   p_joint 6.517593e-03

Joint ci ratio: 4.635691e-02	ci left: 6.366317e-03	ci right 6.669342e-03	k: 7103	n:1090000
Cons ci ratio: 1.082403e-01	ci left: 1.136770e-03	ci right 1.267738e-03	k: 1309	n:1090000
KS ci ratio: 1.373117e-02	ci left: 6.909096e-02	ci right 7.004711e-02	k: 75829	n:1090000
TP53   1090000 perm   608 sec   (1792 perm/sec)   p_kst 6.956789e-02   p_cons 1.200917e-03   p_joint 6.516514e-03

Joint ci ratio: 4.613333e-02	ci left: 6.370443e-03	ci right 6.672164e-03	k: 7172	n:1100000
Cons ci ratio: 1.077888e-01	ci left: 1.136166e-03	ci right 1.266484e-03	k: 1320	n:1100000
KS ci ratio: 1.367108e-02	ci left: 6.906986e-02	ci right 7.002150e-02	k: 76499	n:1100000
TP53   1100000 perm   618 sec   (1780 perm/sec)   p_kst 6.954455e-02   p_cons 1.200000e-03   p_joint 6.520000e-03

Joint ci ratio: 4.623536e-02	ci left: 6.285440e-03	ci right 6.583811e-03	k: 7141	n:1110000
Cons ci ratio: 1.073428e-01	ci left: 1.135573e-03	ci right 1.265250e-03	k: 1331	n:1110000
KS ci ratio: 1.361224e-02	ci left: 6.904465e-02	ci right 6.999183e-02	k: 77164	n:1110000
TP53   1110000 perm   627 sec   (1769 perm/sec)   p_kst 6.951712e-02   p_cons 1.199099e-03   p_joint 6.433333e-03

Joint ci ratio: 4.625300e-02	ci left: 6.224903e-03	ci right 6.520515e-03	k: 7136	n:1120000
Cons ci ratio: 1.069822e-01	ci left: 1.133254e-03	ci right 1.262205e-03	k: 1340	n:1120000
KS ci ratio: 1.355304e-02	ci left: 6.903059e-02	ci right 6.997342e-02	k: 77841	n:1120000
TP53   1120000 perm   637 sec   (1758 perm/sec)   p_kst 6.950089e-02   p_cons 1.196429e-03   p_joint 6.371429e-03

Joint ci ratio: 4.624127e-02	ci left: 6.173311e-03	ci right 6.466397e-03	k: 7140	n:1130000
Cons ci ratio: 1.065067e-01	ci left: 1.133562e-03	ci right 1.261937e-03	k: 1352	n:1130000
KS ci ratio: 1.349543e-02	ci left: 6.900885e-02	ci right 6.994734e-02	k: 78509	n:1130000
TP53   1130000 perm   647 sec   (1747 perm/sec)   p_kst 6.947699e-02   p_cons 1.196460e-03   p_joint 6.318584e-03

Joint ci ratio: 4.733898e-02	ci left: 5.837382e-03	ci right 6.121277e-03	k: 6815	n:1140000
Cons ci ratio: 1.063892e-01	ci left: 1.126179e-03	ci right 1.253570e-03	k: 1355	n:1140000
KS ci ratio: 1.343709e-02	ci left: 6.900148e-02	ci right 6.993579e-02	k: 79193	n:1140000
TP53   1140000 perm   656 sec   (1737 perm/sec)   p_kst 6.946754e-02   p_cons 1.188596e-03   p_joint 5.978070e-03

Joint ci ratio: 4.732974e-02	ci left: 5.789197e-03	ci right 6.070692e-03	k: 6818	n:1150000
Cons ci ratio: 1.058441e-01	ci left: 1.128237e-03	ci right 1.255166e-03	k: 1369	n:1150000
KS ci ratio: 1.338095e-02	ci left: 6.898039e-02	ci right 6.991048e-02	k: 79861	n:1150000
TP53   1150000 perm   666 sec   (1727 perm/sec)   p_kst 6.944435e-02   p_cons 1.190435e-03   p_joint 5.928696e-03

Joint ci ratio: 4.818786e-02	ci left: 5.535698e-03	ci right 5.809882e-03	k: 6579	n:1160000
Cons ci ratio: 1.056518e-01	ci left: 1.122707e-03	ci right 1.248770e-03	k: 1374	n:1160000
KS ci ratio: 1.332532e-02	ci left: 6.896138e-02	ci right 6.988732e-02	k: 80531	n:1160000
TP53   1160000 perm   676 sec   (1717 perm/sec)   p_kst 6.942328e-02   p_cons 1.184483e-03   p_joint 5.671552e-03

Joint ci ratio: 4.844140e-02	ci left: 5.430960e-03	ci right 5.701411e-03	k: 6511	n:1170000
Cons ci ratio: 1.051938e-01	ci left: 1.123097e-03	ci right 1.248624e-03	k: 1386	n:1170000
KS ci ratio: 1.326748e-02	ci left: 6.897083e-02	ci right 6.989284e-02	k: 81234	n:1170000
TP53   1170000 perm   686 sec   (1706 perm/sec)   p_kst 6.943077e-02   p_cons 1.184615e-03   p_joint 5.564957e-03

Joint ci ratio: 4.833816e-02	ci left: 5.408375e-03	ci right 5.677112e-03	k: 6539	n:1180000
Cons ci ratio: 1.047792e-01	ci left: 1.122657e-03	ci right 1.247609e-03	k: 1397	n:1180000
KS ci ratio: 1.321273e-02	ci left: 6.895731e-02	ci right 6.987531e-02	k: 81910	n:1180000
TP53   1180000 perm   696 sec   (1696 perm/sec)   p_kst 6.941525e-02   p_cons 1.183898e-03   p_joint 5.541525e-03

Joint ci ratio: 4.787410e-02	ci left: 5.468369e-03	ci right 5.737407e-03	k: 6666	n:1190000
Cons ci ratio: 1.043323e-01	ci left: 1.123043e-03	ci right 1.247472e-03	k: 1409	n:1190000
KS ci ratio: 1.321834e-02	ci left: 6.836345e-02	ci right 6.927394e-02	k: 81893	n:1190000
TP53   1190000 perm   706 sec   (1686 perm/sec)   p_kst 6.881765e-02   p_cons 1.184034e-03   p_joint 5.601681e-03

Joint ci ratio: 4.764936e-02	ci left: 5.474673e-03	ci right 5.742722e-03	k: 6729	n:1200000
Cons ci ratio: 1.037816e-01	ci left: 1.125859e-03	ci right 1.249902e-03	k: 1424	n:1200000
KS ci ratio: 1.315949e-02	ci left: 6.840093e-02	ci right 6.930782e-02	k: 82624	n:1200000
TP53   1200000 perm   716 sec   (1676 perm/sec)   p_kst 6.885333e-02   p_cons 1.186667e-03   p_joint 5.607500e-03

Joint ci ratio: 4.746994e-02	ci left: 5.471075e-03	ci right 5.737911e-03	k: 6780	n:1210000
Cons ci ratio: 1.035641e-01	ci left: 1.121385e-03	ci right 1.244659e-03	k: 1430	n:1210000
KS ci ratio: 1.310504e-02	ci left: 6.840236e-02	ci right 6.930549e-02	k: 83312	n:1210000
TP53   1210000 perm   726 sec   (1666 perm/sec)   p_kst 6.885289e-02   p_cons 1.181818e-03   p_joint 5.603306e-03

Joint ci ratio: 4.723347e-02	ci left: 5.481309e-03	ci right 5.747276e-03	k: 6848	n:1220000
Cons ci ratio: 1.030611e-01	ci left: 1.123372e-03	ci right 1.246229e-03	k: 1444	n:1220000
KS ci ratio: 1.305227e-02	ci left: 6.839397e-02	ci right 6.929333e-02	k: 83988	n:1220000
TP53   1220000 perm   736 sec   (1657 perm/sec)   p_kst 6.884262e-02   p_cons 1.183607e-03   p_joint 5.613115e-03

Joint ci ratio: 4.702785e-02	ci left: 5.484951e-03	ci right 5.749905e-03	k: 6908	n:1230000
Cons ci ratio: 1.027771e-01	ci left: 1.120575e-03	ci right 1.242769e-03	k: 1452	n:1230000
KS ci ratio: 1.299741e-02	ci left: 6.841247e-02	ci right 6.930826e-02	k: 84697	n:1230000
TP53   1230000 perm   747 sec   (1647 perm/sec)   p_kst 6.885935e-02   p_cons 1.180488e-03   p_joint 5.616260e-03

Joint ci ratio: 4.681476e-02	ci left: 5.490929e-03	ci right 5.754937e-03	k: 6971	n:1240000
Cons ci ratio: 1.023553e-01	ci left: 1.120968e-03	ci right 1.242672e-03	k: 1464	n:1240000
KS ci ratio: 1.294576e-02	ci left: 6.840575e-02	ci right 6.929788e-02	k: 85375	n:1240000
TP53   1240000 perm   757 sec   (1638 perm/sec)   p_kst 6.885081e-02   p_cons 1.180645e-03   p_joint 5.621774e-03

Joint ci ratio: 4.689706e-02	ci left: 5.428022e-03	ci right 5.689477e-03	k: 6947	n:1250000
Cons ci ratio: 1.017663e-01	ci left: 1.125253e-03	ci right 1.246677e-03	k: 1481	n:1250000
KS ci ratio: 1.289262e-02	ci left: 6.841989e-02	ci right 6.930851e-02	k: 86079	n:1250000
TP53   1250000 perm   767 sec   (1629 perm/sec)   p_kst 6.886320e-02   p_cons 1.184800e-03   p_joint 5.557600e-03

Joint ci ratio: 4.666901e-02	ci left: 5.438280e-03	ci right 5.698921e-03	k: 7015	n:1260000
Cons ci ratio: 1.013908e-01	ci left: 1.124831e-03	ci right 1.245735e-03	k: 1492	n:1260000
KS ci ratio: 1.283935e-02	ci left: 6.844172e-02	ci right 6.932693e-02	k: 86793	n:1260000
TP53   1260000 perm   778 sec   (1620 perm/sec)   p_kst 6.888333e-02   p_cons 1.184127e-03   p_joint 5.567460e-03

Joint ci ratio: 4.649709e-02	ci left: 5.435927e-03	ci right 5.695470e-03	k: 7067	n:1270000
Cons ci ratio: 1.010530e-01	ci left: 1.123648e-03	ci right 1.243999e-03	k: 1502	n:1270000
KS ci ratio: 1.278672e-02	ci left: 6.846322e-02	ci right 6.934504e-02	k: 87507	n:1270000
TP53   1270000 perm   789 sec   (1611 perm/sec)   p_kst 6.890315e-02   p_cons 1.182677e-03   p_joint 5.564567e-03

Joint ci ratio: 4.632378e-02	ci left: 5.434384e-03	ci right 5.692861e-03	k: 7120	n:1280000
Cons ci ratio: 1.005192e-01	ci left: 1.127055e-03	ci right 1.247095e-03	k: 1518	n:1280000
KS ci ratio: 1.274002e-02	ci left: 6.843142e-02	ci right 6.930959e-02	k: 88153	n:1280000
TP53   1280000 perm   799 sec   (1601 perm/sec)   p_kst 6.886953e-02   p_cons 1.185937e-03   p_joint 5.562500e-03

Joint ci ratio: 4.615239e-02	ci left: 5.432867e-03	ci right 5.690290e-03	k: 7173	n:1290000
Cons ci ratio: 1.000264e-01	ci left: 1.129654e-03	ci right 1.249347e-03	k: 1533	n:1290000
KS ci ratio: 1.269152e-02	ci left: 6.842331e-02	ci right 6.929801e-02	k: 88829	n:1290000
TP53   1290000 perm   810 sec   (1592 perm/sec)   p_kst 6.885969e-02   p_cons 1.188372e-03   p_joint 5.560465e-03

Joint ci ratio: 4.596052e-02	ci left: 5.436699e-03	ci right 5.693204e-03	k: 7233	n:1300000
Cons ci ratio: 9.976679e-02	ci left: 1.126965e-03	ci right 1.246045e-03	k: 1541	n:1300000
KS ci ratio: 1.264493e-02	ci left: 6.840152e-02	ci right 6.927271e-02	k: 89487	n:1300000
TP53   1300000 perm   821 sec   (1583 perm/sec)   p_kst 6.883615e-02   p_cons 1.185385e-03   p_joint 5.563846e-03

Outputting figure to mutsig2_images.part000000000180/TP53.5_1311_1300000_0.068836_0.0011854_0.0055638.png
                gene_name: TP53
               theta_stop: 0.100 
                    nperm: 1300000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.069 
                   p_cons: 0.0012 
      ci_cons_bounds_left: 0.0011 
     ci_cons_bounds_right: 0.0012 
                  p_joint: 0.0056 
     ci_joint_bounds_left: 0.0054 
    ci_joint_bounds_right: 0.0057 

Current progress: 33 percent done.
TNXB
Processing conservation and coverage...
67% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.763342e-02	ci left: 6.586720e-01	ci right 6.772301e-01	k: 6680	n:10000
Cons ci ratio: 2.015033e-02	ci left: 7.828967e-01	ci right 7.989335e-01	k: 7910	n:10000
KS ci ratio: 5.144913e-02	ci left: 3.577420e-01	ci right 3.767354e-01	k: 3672	n:10000
TNXB   10000 perm   3 sec   (3709 perm/sec)   p_kst 3.672000e-01   p_cons 7.910000e-01   p_joint 6.680000e-01

Outputting figure to mutsig2_images.part000000000180/TNXB.3_14886_10000_0.3672_0.791_0.668.png
                gene_name: TNXB
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 50 percent done.
TPR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.214247e-02	ci left: 3.515781e-01	ci right 3.705029e-01	k: 3610	n:10000
Cons ci ratio: 2.940971e-03	ci left: 9.928469e-01	ci right 9.958540e-01	k: 9945	n:10000
KS ci ratio: 7.027581e-02	ci left: 2.288905e-01	ci right 2.456629e-01	k: 2372	n:10000
TPR   10000 perm   2 sec   (4874 perm/sec)   p_kst 2.372000e-01   p_cons 9.945000e-01   p_joint 3.610000e-01

Outputting figure to mutsig2_images.part000000000180/TPR.3_7296_10000_0.2372_0.9945_0.361.png
                gene_name: TPR
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 67 percent done.
TPRN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.605823e-02	ci left: 3.190972e-01	ci right 3.376029e-01	k: 3283	n:10000
Cons ci ratio: 5.099836e-02	ci left: 3.618190e-01	ci right 3.808560e-01	k: 3713	n:10000
KS ci ratio: 2.980043e-02	ci left: 6.241692e-01	ci right 6.431529e-01	k: 6337	n:10000
TPRN   10000 perm   1 sec   (7146 perm/sec)   p_kst 6.337000e-01   p_cons 3.713000e-01   p_joint 3.283000e-01

Outputting figure to mutsig2_images.part000000000180/TPRN.2_2049_10000_0.6337_0.3713_0.3283.png
                gene_name: TPRN
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 83 percent done.
TPTE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.390347e-03	ci left: 9.709012e-01	ci right 9.772186e-01	k: 9742	n:10000
Cons ci ratio: 2.890802e-02	ci left: 6.382456e-01	ci right 6.570684e-01	k: 6477	n:10000
KS ci ratio: 4.171224e-02	ci left: 4.590794e-01	ci right 4.787387e-01	k: 4689	n:10000
TPTE   10000 perm   1 sec   (7315 perm/sec)   p_kst 4.689000e-01   p_cons 6.477000e-01   p_joint 9.742000e-01

Outputting figure to mutsig2_images.part000000000180/TPTE.2_1740_10000_0.4689_0.6477_0.9742.png
                gene_name: TPTE
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000180
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 180 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1640>
Subject: Job 9878285: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1640>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000181> was used as the working directory.
Started at Fri Oct  5 23:01:20 2012
Results reported at Fri Oct  5 23:57:12 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000181.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000181.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 181  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000181.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   3395.73 sec.
    Max Memory :      2060 MB
    Max Swap   :      4712 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
181
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 181
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 181: processing genes 16322 - 16411
Calculating significance of each gene.
Using projection method.
16322	TRAF1	1
16323	TRAF2	1
16324	TRAF3	1
16325	TRAF3IP1	1
16326	TRAF3IP2	1.437620e-01
16327	TRAF3IP3	7.180233e-03
16328	TRAF4	1
16329	TRAF5	1
16330	TRAF6	1
16331	TRAF7	1
16332	TRAFD1	1
16333	TRAIP	1
16334	TRAK1	1
16335	TRAK2	1
16336	TRAM1	1
16337	TRAM1L1	1
16338	TRAM2	7.273885e-02
16339	TRANK1	1
16340	TRAP1	1
16341	TRAPPC1	1
16342	TRAPPC10	2.831306e-01
16343	TRAPPC2	1
16344	TRAPPC2L	1
16345	TRAPPC3	1
16346	TRAPPC4	1
16347	TRAPPC5	1
16348	TRAPPC6A	3.996574e-02
16349	TRAPPC6B	1
16350	TRAPPC9	1
16351	TRAT1	1
16352	TRDMT1	1
16353	TRDN	1
16354	TREH	1
16355	TREM1	1
16356	TREM2	1
16357	TREML1	1
16358	TREML2	1
16359	TREML4	1
16360	TRERF1	1
16361	TREX1	1
16362	TREX2	1
16363	TRH	1
16364	TRHDE	1
16365	TRHR	1
16366	TRIAP1	1
16367	TRIB1	1
16368	TRIB2	1
16369	TRIB3	1
16370	TRIL	1
16371	TRIM10	1
16372	TRIM11	1
16373	TRIM13	1
16374	TRIM14	1
16375	TRIM15	1
16376	TRIM16	1
16377	TRIM16L	1
16378	TRIM17	1
16379	TRIM2	1
16380	TRIM21	1
16381	TRIM22	1
16382	TRIM23	1
16383	TRIM24	1
16384	TRIM25	1
16385	TRIM26	1
16386	TRIM27	1
16387	TRIM28	1
16388	TRIM29	1
16389	TRIM3	1
16390	TRIM31	3.148580e-02
16391	TRIM32	2.157547e-01
16392	TRIM33	1
16393	TRIM34	1
16394	TRIM35	1
16395	TRIM36	1.981125e-01
In gene TRIM37 the following bins exceed PROBCAP:
    PRAD-EJ-5499	categ 6	N = 2999    n = 1	mu =   9.97e-08
16396	TRIM37	5.827519e-02
16397	TRIM38	1
16398	TRIM39	1
16399	TRIM4	1
16400	TRIM40	1
16401	TRIM41	2.739625e-02
16402	TRIM42	1
16403	TRIM43	1
16404	TRIM44	1
16405	TRIM45	1.802662e-01
16406	TRIM46	1
16407	TRIM47	1
16408	TRIM48	1
16409	TRIM49	1
16410	TRIM5	1
16411	TRIM50	1
Done

Running MutSig 2:
Scatter job 181: processing genes 16322 - 16411
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TRAF3IP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.717009e-02	ci left: 1.971244e-01	ci right 2.130478e-01	k: 2050	n:10000
Cons ci ratio: 8.513967e-02	ci left: 1.674016e-01	ci right 1.823882e-01	k: 1748	n:10000
KS ci ratio: 5.490924e-02	ci left: 3.282306e-01	ci right 3.468641e-01	k: 3375	n:10000
TRAF3IP3   10000 perm   2 sec   (6014 perm/sec)   p_kst 3.375000e-01   p_cons 1.748000e-01   p_joint 2.050000e-01

Outputting figure to mutsig2_images.part000000000181/TRAF3IP3.2_1716_10000_0.3375_0.1748_0.205.png
                gene_name: TRAF3IP3
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 50 percent done.
TRIM41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.644158e-01	ci left: 3.455366e-03	ci right 6.245157e-03	k: 47	n:10000
Cons ci ratio: 2.896504e-02	ci left: 6.373404e-01	ci right 6.561741e-01	k: 6468	n:10000
KS ci ratio: 2.262761e+00	ci left: 2.422185e-05	ci right 7.222801e-04	k: 2	n:10000
TRIM41   10000 perm   2 sec   (6257 perm/sec)   p_kst 2.000000e-04   p_cons 6.468000e-01   p_joint 4.700000e-03

Joint ci ratio: 9.235139e-01	ci left: 4.952318e-04	ci right 1.360585e-03	k: 17	n:20000
Cons ci ratio: 2.161649e-02	ci left: 6.150369e-01	ci right 6.285277e-01	k: 12436	n:20000
KS ci ratio: 1.239272e+00	ci left: 2.057886e-04	ci right 8.540675e-04	k: 9	n:20000
TRIM41   20000 perm   4 sec   (5551 perm/sec)   p_kst 4.500000e-04   p_cons 6.218000e-01   p_joint 8.500000e-04

Joint ci ratio: 8.762318e-01	ci left: 3.813497e-04	ci right 9.888526e-04	k: 19	n:30000
Cons ci ratio: 1.759009e-02	ci left: 6.178887e-01	ci right 6.288874e-01	k: 18702	n:30000
KS ci ratio: 1.131361e+00	ci left: 1.830524e-04	ci right 6.559730e-04	k: 11	n:30000
TRIM41   30000 perm   6 sec   (5298 perm/sec)   p_kst 3.666667e-04   p_cons 6.234000e-01   p_joint 6.333333e-04

Joint ci ratio: 2.757965e-01	ci left: 4.332419e-03	ci right 5.740914e-03	k: 200	n:40000
Cons ci ratio: 1.532131e-02	ci left: 6.159239e-01	ci right 6.254586e-01	k: 24828	n:40000
KS ci ratio: 8.990848e-01	ci left: 2.667196e-04	ci right 7.111011e-04	k: 18	n:40000
TRIM41   40000 perm   8 sec   (5130 perm/sec)   p_kst 4.500000e-04   p_cons 6.207000e-01   p_joint 5.000000e-03

Joint ci ratio: 2.488043e-01	ci left: 4.325586e-03	ci right 5.572957e-03	k: 246	n:50000
Cons ci ratio: 1.372133e-02	ci left: 6.158288e-01	ci right 6.243572e-01	k: 31005	n:50000
KS ci ratio: 7.837961e-01	ci left: 3.075685e-04	ci right 7.141183e-04	k: 24	n:50000
TRIM41   50000 perm   10 sec   (4991 perm/sec)   p_kst 4.800000e-04   p_cons 6.201000e-01   p_joint 4.920000e-03

Joint ci ratio: 2.568604e-01	ci left: 3.370270e-03	ci right 4.378653e-03	k: 231	n:60000
Cons ci ratio: 1.251477e-02	ci left: 6.166198e-01	ci right 6.244019e-01	k: 37231	n:60000
KS ci ratio: 7.686023e-01	ci left: 2.696623e-04	ci right 6.150212e-04	k: 25	n:60000
TRIM41   60000 perm   12 sec   (4875 perm/sec)   p_kst 4.166667e-04   p_cons 6.205167e-01   p_joint 3.850000e-03

Joint ci ratio: 3.029745e-01	ci left: 2.024733e-03	ci right 2.760345e-03	k: 166	n:70000
Cons ci ratio: 1.160022e-02	ci left: 6.163493e-01	ci right 6.235551e-01	k: 43397	n:70000
KS ci ratio: 7.277697e-01	ci left: 2.658130e-04	ci right 5.780599e-04	k: 28	n:70000
TRIM41   70000 perm   15 sec   (4772 perm/sec)   p_kst 4.000000e-04   p_cons 6.199571e-01   p_joint 2.371429e-03

Joint ci ratio: 2.934875e-01	ci left: 1.898837e-03	ci right 2.563088e-03	k: 177	n:80000
Cons ci ratio: 1.087683e-02	ci left: 6.154615e-01	ci right 6.222049e-01	k: 49507	n:80000
KS ci ratio: 6.624518e-01	ci left: 2.943422e-04	ci right 5.938447e-04	k: 34	n:80000
TRIM41   80000 perm   17 sec   (4675 perm/sec)   p_kst 4.250000e-04   p_cons 6.188375e-01   p_joint 2.212500e-03

Joint ci ratio: 2.741422e-01	ci left: 1.956212e-03	ci right 2.587666e-03	k: 203	n:90000
Cons ci ratio: 1.023629e-02	ci left: 6.165079e-01	ci right 6.228622e-01	k: 55772	n:90000
KS ci ratio: 5.908145e-01	ci left: 3.457911e-04	ci right 6.435102e-04	k: 43	n:90000
TRIM41   90000 perm   20 sec   (4549 perm/sec)   p_kst 4.777778e-04   p_cons 6.196889e-01   p_joint 2.255556e-03

Joint ci ratio: 3.769966e-01	ci left: 8.769711e-04	ci right 1.292841e-03	k: 107	n:100000
Cons ci ratio: 9.706249e-03	ci left: 6.169030e-01	ci right 6.229300e-01	k: 61992	n:100000
KS ci ratio: 5.656646e-01	ci left: 3.453581e-04	ci right 6.249519e-04	k: 47	n:100000
TRIM41   100000 perm   22 sec   (4472 perm/sec)   p_kst 4.700000e-04   p_cons 6.199200e-01   p_joint 1.070000e-03

Joint ci ratio: 2.294893e-01	ci left: 2.341971e-03	ci right 2.957445e-03	k: 290	n:110000
Cons ci ratio: 9.254947e-03	ci left: 6.170238e-01	ci right 6.227699e-01	k: 68189	n:110000
KS ci ratio: 5.434752e-01	ci left: 3.452266e-04	ci right 6.095517e-04	k: 51	n:110000
TRIM41   110000 perm   25 sec   (4365 perm/sec)   p_kst 4.636364e-04   p_cons 6.199000e-01   p_joint 2.636364e-03

Joint ci ratio: 1.459565e-01	ci left: 5.538737e-03	ci right 6.418728e-03	k: 716	n:120000
Cons ci ratio: 8.848256e-03	ci left: 6.178225e-01	ci right 6.233217e-01	k: 74469	n:120000
KS ci ratio: 5.237076e-01	ci left: 3.452975e-04	ci right 5.965426e-04	k: 55	n:120000
TRIM41   120000 perm   28 sec   (4297 perm/sec)   p_kst 4.583333e-04   p_cons 6.205750e-01   p_joint 5.966667e-03

Joint ci ratio: 1.424379e-01	ci left: 5.379581e-03	ci right 6.211927e-03	k: 752	n:130000
Cons ci ratio: 8.043564e-03	ci left: 6.436554e-01	ci right 6.488612e-01	k: 84014	n:130000
KS ci ratio: 4.898775e-01	ci left: 3.724112e-04	ci right 6.199916e-04	k: 63	n:130000
TRIM41   130000 perm   31 sec   (4232 perm/sec)   p_kst 4.846154e-04   p_cons 6.462615e-01   p_joint 5.784615e-03

Joint ci ratio: 1.874407e-01	ci left: 2.822371e-03	ci right 3.412792e-03	k: 435	n:140000
Cons ci ratio: 7.748023e-03	ci left: 6.439249e-01	ci right 6.489405e-01	k: 90501	n:140000
KS ci ratio: 4.752527e-01	ci left: 3.709049e-04	ci right 6.077295e-04	k: 67	n:140000
TRIM41   140000 perm   34 sec   (4166 perm/sec)   p_kst 4.785714e-04   p_cons 6.464357e-01   p_joint 3.107143e-03

Joint ci ratio: 1.313050e-01	ci left: 5.518678e-03	ci right 6.300606e-03	k: 885	n:150000
Cons ci ratio: 7.494953e-03	ci left: 6.434203e-01	ci right 6.482674e-01	k: 96877	n:150000
KS ci ratio: 4.555768e-01	ci left: 3.814878e-04	ci right 6.118719e-04	k: 73	n:150000
TRIM41   150000 perm   37 sec   (4102 perm/sec)   p_kst 4.866667e-04   p_cons 6.458467e-01   p_joint 5.900000e-03

Joint ci ratio: 1.276849e-01	ci left: 5.482179e-03	ci right 6.235897e-03	k: 936	n:160000
Cons ci ratio: 7.257799e-03	ci left: 6.434445e-01	ci right 6.481377e-01	k: 103327	n:160000
KS ci ratio: 4.327793e-01	ci left: 4.020553e-04	ci right 6.291838e-04	k: 81	n:160000
TRIM41   160000 perm   40 sec   (4038 perm/sec)   p_kst 5.062500e-04   p_cons 6.457938e-01   p_joint 5.850000e-03

Joint ci ratio: 1.560108e-01	ci left: 3.411282e-03	ci right 3.994081e-03	k: 628	n:170000
Cons ci ratio: 7.032678e-03	ci left: 6.440630e-01	ci right 6.486143e-01	k: 109878	n:170000
KS ci ratio: 4.250761e-01	ci left: 3.941461e-04	ci right 6.117153e-04	k: 84	n:170000
TRIM41   170000 perm   43 sec   (3977 perm/sec)   p_kst 4.941176e-04   p_cons 6.463412e-01   p_joint 3.694118e-03

Joint ci ratio: 1.605735e-01	ci left: 3.034974e-03	ci right 3.570109e-03	k: 593	n:180000
Cons ci ratio: 7.242116e-03	ci left: 6.171857e-01	ci right 6.216771e-01	k: 111498	n:180000
KS ci ratio: 4.042104e-01	ci left: 4.170363e-04	ci right 6.329148e-04	k: 93	n:180000
TRIM41   180000 perm   46 sec   (3901 perm/sec)   p_kst 5.166667e-04   p_cons 6.194333e-01   p_joint 3.294444e-03

Joint ci ratio: 1.585912e-01	ci left: 2.951023e-03	ci right 3.464320e-03	k: 608	n:190000
Cons ci ratio: 7.042693e-03	ci left: 6.176655e-01	ci right 6.220361e-01	k: 117772	n:190000
KS ci ratio: 3.824461e-01	ci left: 4.472609e-04	ci right 6.631900e-04	k: 104	n:190000
TRIM41   190000 perm   49 sec   (3848 perm/sec)   p_kst 5.473684e-04   p_cons 6.198526e-01   p_joint 3.200000e-03

Joint ci ratio: 1.511886e-01	ci left: 3.096673e-03	ci right 3.607889e-03	k: 669	n:200000
Cons ci ratio: 6.865064e-03	ci left: 6.176733e-01	ci right 6.219332e-01	k: 123961	n:200000
KS ci ratio: 3.736536e-01	ci left: 4.475224e-04	ci right 6.573952e-04	k: 109	n:200000
TRIM41   200000 perm   53 sec   (3797 perm/sec)   p_kst 5.450000e-04   p_cons 6.198050e-01   p_joint 3.345000e-03

Joint ci ratio: 1.465554e-01	ci left: 3.146354e-03	ci right 3.648460e-03	k: 712	n:210000
Cons ci ratio: 6.703819e-03	ci left: 6.174290e-01	ci right 6.215868e-01	k: 130097	n:210000
KS ci ratio: 3.533501e-01	ci left: 4.824685e-04	ci right 6.936189e-04	k: 122	n:210000
TRIM41   210000 perm   56 sec   (3749 perm/sec)   p_kst 5.809524e-04   p_cons 6.195095e-01   p_joint 3.390476e-03

Joint ci ratio: 1.476089e-01	ci left: 2.959535e-03	ci right 3.435521e-03	k: 702	n:220000
Cons ci ratio: 6.548748e-03	ci left: 6.175447e-01	ci right 6.216067e-01	k: 136307	n:220000
KS ci ratio: 3.385325e-01	ci left: 5.061970e-04	ci right 7.164146e-04	k: 133	n:220000
TRIM41   220000 perm   59 sec   (3704 perm/sec)   p_kst 6.045455e-04   p_cons 6.195773e-01   p_joint 3.190909e-03

Joint ci ratio: 1.451545e-01	ci left: 2.931383e-03	ci right 3.394322e-03	k: 726	n:230000
Cons ci ratio: 6.405321e-03	ci left: 6.175513e-01	ci right 6.215239e-01	k: 142494	n:230000
KS ci ratio: 3.311989e-01	ci left: 5.080825e-04	ci right 7.135382e-04	k: 139	n:230000
TRIM41   230000 perm   63 sec   (3656 perm/sec)   p_kst 6.043478e-04   p_cons 6.195391e-01   p_joint 3.156522e-03

Joint ci ratio: 1.450640e-01	ci left: 2.813245e-03	ci right 3.257225e-03	k: 727	n:240000
Cons ci ratio: 6.267765e-03	ci left: 6.177960e-01	ci right 6.216845e-01	k: 148738	n:240000
KS ci ratio: 3.243221e-01	ci left: 5.098557e-04	ci right 7.108571e-04	k: 145	n:240000
TRIM41   240000 perm   66 sec   (3610 perm/sec)   p_kst 6.041667e-04   p_cons 6.197417e-01   p_joint 3.029167e-03

Joint ci ratio: 1.420705e-01	ci left: 2.820261e-03	ci right 3.255386e-03	k: 758	n:250000
Cons ci ratio: 6.142664e-03	ci left: 6.177176e-01	ci right 6.215276e-01	k: 154906	n:250000
KS ci ratio: 3.147637e-01	ci left: 5.225755e-04	ci right 7.212991e-04	k: 154	n:250000
TRIM41   250000 perm   70 sec   (3566 perm/sec)   p_kst 6.160000e-04   p_cons 6.196240e-01   p_joint 3.032000e-03

Joint ci ratio: 1.398780e-01	ci left: 2.800840e-03	ci right 3.225743e-03	k: 782	n:260000
Cons ci ratio: 6.021916e-03	ci left: 6.178692e-01	ci right 6.216050e-01	k: 161132	n:260000
KS ci ratio: 3.088430e-01	ci left: 5.237480e-04	ci right 7.184335e-04	k: 160	n:260000
TRIM41   260000 perm   74 sec   (3519 perm/sec)   p_kst 6.153846e-04   p_cons 6.197385e-01   p_joint 3.007692e-03

Joint ci ratio: 1.398858e-01	ci left: 2.697095e-03	ci right 3.106284e-03	k: 782	n:270000
Cons ci ratio: 5.905791e-03	ci left: 6.181883e-01	ci right 6.218536e-01	k: 167406	n:270000
KS ci ratio: 3.014435e-01	ci left: 5.317118e-04	ci right 7.237154e-04	k: 168	n:270000
TRIM41   270000 perm   78 sec   (3471 perm/sec)   p_kst 6.222222e-04   p_cons 6.200222e-01   p_joint 2.896296e-03

Joint ci ratio: 1.323127e-01	ci left: 2.918183e-03	ci right 3.335064e-03	k: 874	n:280000
Cons ci ratio: 5.801096e-03	ci left: 6.180812e-01	ci right 6.216807e-01	k: 173567	n:280000
KS ci ratio: 2.970816e-01	ci left: 5.292386e-04	ci right 7.170624e-04	k: 173	n:280000
TRIM41   280000 perm   82 sec   (3425 perm/sec)   p_kst 6.178571e-04   p_cons 6.198821e-01   p_joint 3.121429e-03

Joint ci ratio: 1.301737e-01	ci left: 2.914272e-03	ci right 3.323343e-03	k: 903	n:290000
Cons ci ratio: 5.699693e-03	ci left: 6.181546e-01	ci right 6.216913e-01	k: 179778	n:290000
KS ci ratio: 2.929036e-01	ci left: 5.269546e-04	ci right 7.108498e-04	k: 178	n:290000
TRIM41   290000 perm   86 sec   (3380 perm/sec)   p_kst 6.137931e-04   p_cons 6.199241e-01   p_joint 3.113793e-03

Joint ci ratio: 1.277921e-01	ci left: 2.926808e-03	ci right 3.329552e-03	k: 937	n:300000
Cons ci ratio: 5.605925e-03	ci left: 6.180134e-01	ci right 6.214910e-01	k: 185926	n:300000
KS ci ratio: 2.850477e-01	ci left: 5.403079e-04	ci right 7.228964e-04	k: 188	n:300000
TRIM41   300000 perm   90 sec   (3340 perm/sec)   p_kst 6.266667e-04   p_cons 6.197533e-01   p_joint 3.123333e-03

Joint ci ratio: 1.261237e-01	ci left: 2.910477e-03	ci right 3.305354e-03	k: 962	n:310000
Cons ci ratio: 5.513428e-03	ci left: 6.181562e-01	ci right 6.215770e-01	k: 192159	n:310000
KS ci ratio: 2.813511e-01	ci left: 5.378622e-04	ci right 7.168488e-04	k: 193	n:310000
TRIM41   310000 perm   94 sec   (3301 perm/sec)   p_kst 6.225806e-04   p_cons 6.198677e-01   p_joint 3.103226e-03

Joint ci ratio: 1.242669e-01	ci left: 2.907311e-03	ci right 3.295524e-03	k: 991	n:320000
Cons ci ratio: 5.425794e-03	ci left: 6.182531e-01	ci right 6.216198e-01	k: 198380	n:320000
KS ci ratio: 2.799138e-01	ci left: 5.268637e-04	ci right 7.011367e-04	k: 195	n:320000
TRIM41   320000 perm   98 sec   (3260 perm/sec)   p_kst 6.093750e-04   p_cons 6.199375e-01   p_joint 3.096875e-03

Joint ci ratio: 1.219517e-01	ci left: 2.930818e-03	ci right 3.314353e-03	k: 1029	n:330000
Cons ci ratio: 5.341832e-03	ci left: 6.183778e-01	ci right 6.216929e-01	k: 204612	n:330000
KS ci ratio: 2.736992e-01	ci left: 5.362786e-04	ci right 7.090503e-04	k: 204	n:330000
TRIM41   330000 perm   103 sec   (3219 perm/sec)   p_kst 6.181818e-04   p_cons 6.200364e-01   p_joint 3.118182e-03

Joint ci ratio: 1.204993e-01	ci left: 2.915916e-03	ci right 3.292632e-03	k: 1054	n:340000
Cons ci ratio: 5.261125e-03	ci left: 6.185426e-01	ci right 6.218083e-01	k: 210860	n:340000
KS ci ratio: 2.717195e-01	ci left: 5.287257e-04	ci right 6.976217e-04	k: 207	n:340000
TRIM41   340000 perm   107 sec   (3179 perm/sec)   p_kst 6.088235e-04   p_cons 6.201765e-01   p_joint 3.100000e-03

Joint ci ratio: 1.208498e-01	ci left: 2.815970e-03	ci right 3.180907e-03	k: 1048	n:350000
Cons ci ratio: 5.186138e-03	ci left: 6.185010e-01	ci right 6.217198e-01	k: 217039	n:350000
KS ci ratio: 2.685118e-01	ci left: 5.269375e-04	ci right 6.929406e-04	k: 212	n:350000
TRIM41   350000 perm   112 sec   (3135 perm/sec)   p_kst 6.057143e-04   p_cons 6.201114e-01   p_joint 2.994286e-03

Joint ci ratio: 1.188270e-01	ci left: 2.834753e-03	ci right 3.195543e-03	k: 1084	n:360000
Cons ci ratio: 5.110952e-03	ci left: 6.187679e-01	ci right 6.219412e-01	k: 223328	n:360000
KS ci ratio: 2.666418e-01	ci left: 5.200745e-04	ci right 6.825837e-04	k: 215	n:360000
TRIM41   360000 perm   116 sec   (3097 perm/sec)   p_kst 5.972222e-04   p_cons 6.203556e-01   p_joint 3.011111e-03

Joint ci ratio: 1.178554e-01	ci left: 2.805344e-03	ci right 3.159268e-03	k: 1102	n:370000
Cons ci ratio: 5.041139e-03	ci left: 6.188151e-01	ci right 6.219452e-01	k: 229541	n:370000
KS ci ratio: 2.642074e-01	ci left: 5.161098e-04	ci right 6.756642e-04	k: 219	n:370000
TRIM41   370000 perm   121 sec   (3055 perm/sec)   p_kst 5.918919e-04   p_cons 6.203811e-01   p_joint 2.978378e-03

Joint ci ratio: 1.162846e-01	ci left: 2.808155e-03	ci right 3.157387e-03	k: 1132	n:380000
Cons ci ratio: 4.973778e-03	ci left: 6.188917e-01	ci right 6.219802e-01	k: 235766	n:380000
KS ci ratio: 2.624252e-01	ci left: 5.099014e-04	ci right 6.662985e-04	k: 222	n:380000
TRIM41   380000 perm   126 sec   (3009 perm/sec)   p_kst 5.842105e-04   p_cons 6.204368e-01   p_joint 2.978947e-03

Joint ci ratio: 1.119155e-01	ci left: 2.960349e-03	ci right 3.313764e-03	k: 1222	n:390000
Cons ci ratio: 4.910677e-03	ci left: 6.188081e-01	ci right 6.218568e-01	k: 241930	n:390000
KS ci ratio: 2.601035e-01	ci left: 5.064116e-04	ci right 6.601408e-04	k: 226	n:390000
TRIM41   390000 perm   131 sec   (2976 perm/sec)   p_kst 5.794872e-04   p_cons 6.203333e-01   p_joint 3.133333e-03

Joint ci ratio: 1.128963e-01	ci left: 2.835306e-03	ci right 3.176957e-03	k: 1201	n:400000
Cons ci ratio: 4.850046e-03	ci left: 6.187164e-01	ci right 6.217269e-01	k: 248089	n:400000
KS ci ratio: 2.584025e-01	ci left: 5.007638e-04	ci right 6.516238e-04	k: 229	n:400000
TRIM41   400000 perm   136 sec   (2940 perm/sec)   p_kst 5.725000e-04   p_cons 6.202225e-01   p_joint 3.002500e-03

Joint ci ratio: 1.119700e-01	ci left: 2.813559e-03	ci right 3.149624e-03	k: 1221	n:410000
Cons ci ratio: 4.790813e-03	ci left: 6.187075e-01	ci right 6.216811e-01	k: 254280	n:410000
KS ci ratio: 2.540218e-01	ci left: 5.068095e-04	ci right 6.564927e-04	k: 237	n:410000
TRIM41   410000 perm   141 sec   (2907 perm/sec)   p_kst 5.780488e-04   p_cons 6.201951e-01   p_joint 2.978049e-03

Joint ci ratio: 1.099181e-01	ci left: 2.853057e-03	ci right 3.187191e-03	k: 1267	n:420000
Cons ci ratio: 4.732908e-03	ci left: 6.187778e-01	ci right 6.217157e-01	k: 260504	n:420000
KS ci ratio: 2.503663e-01	ci left: 5.103561e-04	ci right 6.585796e-04	k: 244	n:420000
TRIM41   420000 perm   146 sec   (2874 perm/sec)   p_kst 5.809524e-04   p_cons 6.202476e-01   p_joint 3.016667e-03

Joint ci ratio: 1.081402e-01	ci left: 2.881720e-03	ci right 3.213405e-03	k: 1309	n:430000
Cons ci ratio: 4.676869e-03	ci left: 6.188638e-01	ci right 6.217672e-01	k: 266736	n:430000
KS ci ratio: 2.468641e-01	ci left: 5.137524e-04	ci right 6.605549e-04	k: 251	n:430000
TRIM41   430000 perm   151 sec   (2843 perm/sec)   p_kst 5.837209e-04   p_cons 6.203163e-01   p_joint 3.044186e-03

Joint ci ratio: 1.074470e-01	ci left: 2.853819e-03	ci right 3.180053e-03	k: 1326	n:440000
Cons ci ratio: 4.623622e-03	ci left: 6.188595e-01	ci right 6.217298e-01	k: 272930	n:440000
KS ci ratio: 2.439767e-01	ci left: 5.148740e-04	ci right 6.600156e-04	k: 257	n:440000
TRIM41   440000 perm   156 sec   (2812 perm/sec)   p_kst 5.840909e-04   p_cons 6.202955e-01   p_joint 3.013636e-03

Joint ci ratio: 1.061742e-01	ci left: 2.859612e-03	ci right 3.182395e-03	k: 1358	n:450000
Cons ci ratio: 4.570946e-03	ci left: 6.189802e-01	ci right 6.218182e-01	k: 279180	n:450000
KS ci ratio: 2.421076e-01	ci left: 5.117799e-04	ci right 6.547779e-04	k: 261	n:450000
TRIM41   450000 perm   162 sec   (2782 perm/sec)   p_kst 5.800000e-04   p_cons 6.204000e-01   p_joint 3.017778e-03

Joint ci ratio: 1.046818e-01	ci left: 2.879996e-03	ci right 3.200228e-03	k: 1397	n:460000
Cons ci ratio: 4.522241e-03	ci left: 6.188652e-01	ci right 6.216724e-01	k: 285324	n:460000
KS ci ratio: 2.389365e-01	ci left: 5.149547e-04	ci right 6.566762e-04	k: 268	n:460000
TRIM41   460000 perm   167 sec   (2753 perm/sec)   p_kst 5.826087e-04   p_cons 6.202696e-01   p_joint 3.036957e-03

Joint ci ratio: 1.036857e-01	ci left: 2.874668e-03	ci right 3.191082e-03	k: 1424	n:470000
Cons ci ratio: 4.473746e-03	ci left: 6.188937e-01	ci right 6.216708e-01	k: 291533	n:470000
KS ci ratio: 2.358867e-01	ci left: 5.180061e-04	ci right 6.584821e-04	k: 275	n:470000
TRIM41   470000 perm   173 sec   (2724 perm/sec)   p_kst 5.851064e-04   p_cons 6.202830e-01   p_joint 3.029787e-03

Joint ci ratio: 1.027530e-01	ci left: 2.867547e-03	ci right 3.180166e-03	k: 1450	n:480000
Cons ci ratio: 4.427386e-03	ci left: 6.188565e-01	ci right 6.216045e-01	k: 297711	n:480000
KS ci ratio: 2.337789e-01	ci left: 5.170181e-04	ci right 6.557922e-04	k: 280	n:480000
TRIM41   480000 perm   178 sec   (2696 perm/sec)   p_kst 5.833333e-04   p_cons 6.202313e-01   p_joint 3.020833e-03

Joint ci ratio: 1.016038e-01	ci left: 2.874652e-03	ci right 3.184331e-03	k: 1483	n:490000
Cons ci ratio: 4.382399e-03	ci left: 6.188251e-01	ci right 6.215449e-01	k: 303891	n:490000
KS ci ratio: 2.301220e-01	ci left: 5.237670e-04	ci right 6.618411e-04	k: 289	n:490000
TRIM41   490000 perm   184 sec   (2669 perm/sec)   p_kst 5.897959e-04   p_cons 6.201857e-01   p_joint 3.026531e-03

Joint ci ratio: 1.004260e-01	ci left: 2.885392e-03	ci right 3.192412e-03	k: 1518	n:500000
Cons ci ratio: 4.339088e-03	ci left: 6.187590e-01	ci right 6.214516e-01	k: 310053	n:500000
KS ci ratio: 2.281637e-01	ci left: 5.227177e-04	ci right 6.591773e-04	k: 294	n:500000
TRIM41   500000 perm   189 sec   (2642 perm/sec)   p_kst 5.880000e-04   p_cons 6.201060e-01   p_joint 3.036000e-03

Joint ci ratio: 9.961015e-02	ci left: 2.876608e-03	ci right 3.180062e-03	k: 1543	n:510000
Cons ci ratio: 4.297268e-03	ci left: 6.186701e-01	ci right 6.213364e-01	k: 316202	n:510000
KS ci ratio: 2.266328e-01	ci left: 5.198646e-04	ci right 6.545416e-04	k: 298	n:510000
TRIM41   510000 perm   195 sec   (2617 perm/sec)   p_kst 5.843137e-04   p_cons 6.200039e-01   p_joint 3.025490e-03

Joint ci ratio: 9.862492e-02	ci left: 2.879426e-03	ci right 3.179999e-03	k: 1574	n:520000
Cons ci ratio: 4.256843e-03	ci left: 6.185617e-01	ci right 6.212023e-01	k: 322339	n:520000
KS ci ratio: 2.251323e-01	ci left: 5.171242e-04	ci right 6.500812e-04	k: 302	n:520000
TRIM41   520000 perm   201 sec   (2592 perm/sec)   p_kst 5.807692e-04   p_cons 6.198827e-01   p_joint 3.026923e-03

Joint ci ratio: 9.775999e-02	ci left: 2.876630e-03	ci right 3.174127e-03	k: 1602	n:530000
Cons ci ratio: 4.216423e-03	ci left: 6.185821e-01	ci right 6.211977e-01	k: 328542	n:530000
KS ci ratio: 2.232976e-01	ci left: 5.162712e-04	ci right 6.477785e-04	k: 307	n:530000
TRIM41   530000 perm   207 sec   (2567 perm/sec)   p_kst 5.792453e-04   p_cons 6.198906e-01   p_joint 3.022642e-03

Joint ci ratio: 9.679843e-02	ci left: 2.881177e-03	ci right 3.176047e-03	k: 1634	n:540000
Cons ci ratio: 4.177674e-03	ci left: 6.185408e-01	ci right 6.211320e-01	k: 334712	n:540000
KS ci ratio: 2.183877e-01	ci left: 5.312031e-04	ci right 6.631395e-04	k: 321	n:540000
TRIM41   540000 perm   212 sec   (2542 perm/sec)   p_kst 5.944444e-04   p_cons 6.198370e-01   p_joint 3.025926e-03

Joint ci ratio: 9.554901e-02	ci left: 2.905095e-03	ci right 3.198360e-03	k: 1677	n:550000
Cons ci ratio: 4.139750e-03	ci left: 6.185265e-01	ci right 6.210941e-01	k: 340896	n:550000
KS ci ratio: 2.173780e-01	ci left: 5.267017e-04	ci right 6.568344e-04	k: 324	n:550000
TRIM41   550000 perm   219 sec   (2517 perm/sec)   p_kst 5.890909e-04   p_cons 6.198109e-01   p_joint 3.049091e-03

Joint ci ratio: 9.484556e-02	ci left: 2.896798e-03	ci right 3.186953e-03	k: 1702	n:560000
Cons ci ratio: 4.103852e-03	ci left: 6.183966e-01	ci right 6.209414e-01	k: 347015	n:560000
KS ci ratio: 2.150740e-01	ci left: 5.291194e-04	ci right 6.582810e-04	k: 331	n:560000
TRIM41   560000 perm   225 sec   (2493 perm/sec)   p_kst 5.910714e-04   p_cons 6.196696e-01   p_joint 3.039286e-03

Joint ci ratio: 9.391242e-02	ci left: 2.904218e-03	ci right 3.192097e-03	k: 1736	n:570000
Cons ci ratio: 4.067235e-03	ci left: 6.184611e-01	ci right 6.209833e-01	k: 353242	n:570000
KS ci ratio: 2.131565e-01	ci left: 5.297985e-04	ci right 6.578221e-04	k: 337	n:570000
TRIM41   570000 perm   231 sec   (2470 perm/sec)   p_kst 5.912281e-04   p_cons 6.197228e-01   p_joint 3.045614e-03

Joint ci ratio: 9.311183e-02	ci left: 2.904660e-03	ci right 3.189995e-03	k: 1766	n:580000
Cons ci ratio: 4.032142e-03	ci left: 6.184578e-01	ci right 6.209582e-01	k: 359431	n:580000
KS ci ratio: 2.125293e-01	ci left: 5.239284e-04	ci right 6.501124e-04	k: 339	n:580000
TRIM41   580000 perm   237 sec   (2447 perm/sec)   p_kst 5.844828e-04   p_cons 6.197086e-01   p_joint 3.044828e-03

Joint ci ratio: 9.246048e-02	ci left: 2.896818e-03	ci right 3.179283e-03	k: 1791	n:590000
Cons ci ratio: 3.997611e-03	ci left: 6.184938e-01	ci right 6.209729e-01	k: 365643	n:590000
KS ci ratio: 2.106785e-01	ci left: 5.246789e-04	ci right 6.498011e-04	k: 345	n:590000
TRIM41   590000 perm   243 sec   (2424 perm/sec)   p_kst 5.847458e-04   p_cons 6.197339e-01   p_joint 3.035593e-03

Joint ci ratio: 9.187334e-02	ci left: 2.885987e-03	ci right 3.165513e-03	k: 1814	n:600000
Cons ci ratio: 3.963882e-03	ci left: 6.185369e-01	ci right 6.209952e-01	k: 371860	n:600000
KS ci ratio: 2.091727e-01	ci left: 5.238294e-04	ci right 6.477420e-04	k: 350	n:600000
TRIM41   600000 perm   250 sec   (2403 perm/sec)   p_kst 5.833333e-04   p_cons 6.197667e-01   p_joint 3.023333e-03

Joint ci ratio: 9.119776e-02	ci left: 2.881924e-03	ci right 3.158895e-03	k: 1841	n:610000
Cons ci ratio: 3.932510e-03	ci left: 6.183967e-01	ci right 6.208349e-01	k: 377966	n:610000
KS ci ratio: 2.074075e-01	ci left: 5.245651e-04	ci right 6.474716e-04	k: 356	n:610000
TRIM41   610000 perm   256 sec   (2381 perm/sec)   p_kst 5.836066e-04   p_cons 6.196164e-01   p_joint 3.018033e-03

Joint ci ratio: 9.051259e-02	ci left: 2.879576e-03	ci right 3.154132e-03	k: 1869	n:620000
Cons ci ratio: 3.901111e-03	ci left: 6.183531e-01	ci right 6.207716e-01	k: 384129	n:620000
KS ci ratio: 2.056862e-01	ci left: 5.252813e-04	ci right 6.472057e-04	k: 362	n:620000
TRIM41   620000 perm   263 sec   (2357 perm/sec)   p_kst 5.838710e-04   p_cons 6.195629e-01   p_joint 3.014516e-03

Joint ci ratio: 8.958262e-02	ci left: 2.894380e-03	ci right 3.167364e-03	k: 1908	n:630000
Cons ci ratio: 3.869382e-03	ci left: 6.184411e-01	ci right 6.208403e-01	k: 390374	n:630000
KS ci ratio: 2.034562e-01	ci left: 5.289916e-04	ci right 6.502805e-04	k: 370	n:630000
TRIM41   630000 perm   270 sec   (2334 perm/sec)   p_kst 5.873016e-04   p_cons 6.196413e-01   p_joint 3.028571e-03

Joint ci ratio: 8.879512e-02	ci left: 2.901096e-03	ci right 3.172183e-03	k: 1942	n:640000
Cons ci ratio: 3.839561e-03	ci left: 6.183858e-01	ci right 6.207662e-01	k: 396529	n:640000
KS ci ratio: 2.018306e-01	ci left: 5.296254e-04	ci right 6.499699e-04	k: 376	n:640000
TRIM41   640000 perm   277 sec   (2314 perm/sec)   p_kst 5.875000e-04   p_cons 6.195766e-01   p_joint 3.034375e-03

Joint ci ratio: 8.789434e-02	ci left: 2.916644e-03	ci right 3.186277e-03	k: 1982	n:650000
Cons ci ratio: 3.809051e-03	ci left: 6.185016e-01	ci right 6.208635e-01	k: 402794	n:650000
KS ci ratio: 1.997224e-01	ci left: 5.331664e-04	ci right 6.528958e-04	k: 384	n:650000
TRIM41   650000 perm   283 sec   (2294 perm/sec)   p_kst 5.907692e-04   p_cons 6.196831e-01   p_joint 3.049231e-03

Joint ci ratio: 8.717183e-02	ci left: 2.921358e-03	ci right 3.189094e-03	k: 2015	n:660000
Cons ci ratio: 3.779487e-03	ci left: 6.185851e-01	ci right 6.209290e-01	k: 409040	n:660000
KS ci ratio: 1.981840e-01	ci left: 5.337262e-04	ci right 6.525466e-04	k: 390	n:660000
TRIM41   660000 perm   290 sec   (2274 perm/sec)   p_kst 5.909091e-04   p_cons 6.197576e-01   p_joint 3.053030e-03

Joint ci ratio: 8.653042e-02	ci left: 2.921559e-03	ci right 3.187244e-03	k: 2045	n:670000
Cons ci ratio: 3.751788e-03	ci left: 6.185169e-01	ci right 6.208433e-01	k: 415186	n:670000
KS ci ratio: 1.974285e-01	ci left: 5.300159e-04	ci right 6.475064e-04	k: 393	n:670000
TRIM41   670000 perm   297 sec   (2255 perm/sec)   p_kst 5.865672e-04   p_cons 6.196806e-01   p_joint 3.052239e-03

Joint ci ratio: 8.588221e-02	ci left: 2.923201e-03	ci right 3.186943e-03	k: 2076	n:680000
Cons ci ratio: 3.724818e-03	ci left: 6.184346e-01	ci right 6.207438e-01	k: 421321	n:680000
KS ci ratio: 1.952111e-01	ci left: 5.348065e-04	ci right 6.518691e-04	k: 402	n:680000
TRIM41   680000 perm   304 sec   (2234 perm/sec)   p_kst 5.911765e-04   p_cons 6.195897e-01   p_joint 3.052941e-03

Joint ci ratio: 8.528895e-02	ci left: 2.921965e-03	ci right 3.183684e-03	k: 2105	n:690000
Cons ci ratio: 3.697488e-03	ci left: 6.184736e-01	ci right 6.207660e-01	k: 427538	n:690000
KS ci ratio: 1.937739e-01	ci left: 5.353279e-04	ci right 6.515402e-04	k: 408	n:690000
TRIM41   690000 perm   311 sec   (2216 perm/sec)   p_kst 5.913043e-04   p_cons 6.196203e-01   p_joint 3.050725e-03

Joint ci ratio: 8.462834e-02	ci left: 2.926364e-03	ci right 3.186347e-03	k: 2138	n:700000
Cons ci ratio: 3.671430e-03	ci left: 6.184243e-01	ci right 6.207004e-01	k: 433694	n:700000
KS ci ratio: 1.935382e-01	ci left: 5.290395e-04	ci right 6.437305e-04	k: 409	n:700000
TRIM41   700000 perm   319 sec   (2197 perm/sec)   p_kst 5.842857e-04   p_cons 6.195629e-01   p_joint 3.054286e-03

Joint ci ratio: 8.427524e-02	ci left: 2.909963e-03	ci right 3.167357e-03	k: 2156	n:710000
Cons ci ratio: 3.645152e-03	ci left: 6.184752e-01	ci right 6.207351e-01	k: 439920	n:710000
KS ci ratio: 1.926012e-01	ci left: 5.269496e-04	ci right 6.405697e-04	k: 413	n:710000
TRIM41   710000 perm   326 sec   (2177 perm/sec)   p_kst 5.816901e-04   p_cons 6.196056e-01   p_joint 3.036620e-03

Joint ci ratio: 8.361858e-02	ci left: 2.915778e-03	ci right 3.171579e-03	k: 2190	n:720000
Cons ci ratio: 3.619463e-03	ci left: 6.185205e-01	ci right 6.207646e-01	k: 446143	n:720000
KS ci ratio: 1.919075e-01	ci left: 5.235969e-04	ci right 6.360400e-04	k: 416	n:720000
TRIM41   720000 perm   334 sec   (2158 perm/sec)   p_kst 5.777778e-04   p_cons 6.196431e-01   p_joint 3.041667e-03

Joint ci ratio: 8.308948e-02	ci left: 2.913393e-03	ci right 3.167289e-03	k: 2218	n:730000
Cons ci ratio: 3.595071e-03	ci left: 6.184646e-01	ci right 6.206934e-01	k: 452293	n:730000
KS ci ratio: 1.900924e-01	ci left: 5.268594e-04	ci right 6.388093e-04	k: 424	n:730000
TRIM41   730000 perm   341 sec   (2139 perm/sec)   p_kst 5.808219e-04   p_cons 6.195795e-01   p_joint 3.038356e-03

Joint ci ratio: 8.269961e-02	ci left: 2.901812e-03	ci right 3.153455e-03	k: 2239	n:740000
Cons ci ratio: 3.570860e-03	ci left: 6.184508e-01	ci right 6.206645e-01	k: 458473	n:740000
KS ci ratio: 1.887646e-01	ci left: 5.274633e-04	ci right 6.386689e-04	k: 430	n:740000
TRIM41   740000 perm   349 sec   (2121 perm/sec)   p_kst 5.810811e-04   p_cons 6.195581e-01   p_joint 3.025676e-03

Joint ci ratio: 8.191639e-02	ci left: 2.919275e-03	ci right 3.169921e-03	k: 2282	n:750000
Cons ci ratio: 3.546117e-03	ci left: 6.185722e-01	ci right 6.207709e-01	k: 464754	n:750000
KS ci ratio: 1.876793e-01	ci left: 5.267829e-04	ci right 6.371338e-04	k: 435	n:750000
TRIM41   750000 perm   357 sec   (2104 perm/sec)   p_kst 5.800000e-04   p_cons 6.196720e-01   p_joint 3.042667e-03

Joint ci ratio: 8.148953e-02	ci left: 2.911797e-03	ci right 3.160436e-03	k: 2306	n:760000
Cons ci ratio: 3.522953e-03	ci left: 6.185469e-01	ci right 6.207311e-01	k: 470926	n:760000
KS ci ratio: 1.855628e-01	ci left: 5.323949e-04	ci right 6.425222e-04	k: 445	n:760000
TRIM41   760000 perm   364 sec   (2087 perm/sec)   p_kst 5.855263e-04   p_cons 6.196395e-01   p_joint 3.034211e-03

Joint ci ratio: 8.101700e-02	ci left: 2.908334e-03	ci right 3.155169e-03	k: 2333	n:770000
Cons ci ratio: 3.499996e-03	ci left: 6.185548e-01	ci right 6.207248e-01	k: 477123	n:770000
KS ci ratio: 1.853557e-01	ci left: 5.267190e-04	ci right 6.355369e-04	k: 446	n:770000
TRIM41   770000 perm   372 sec   (2071 perm/sec)   p_kst 5.792208e-04   p_cons 6.196403e-01   p_joint 3.029870e-03

Joint ci ratio: 8.029714e-02	ci left: 2.923809e-03	ci right 3.169649e-03	k: 2375	n:780000
Cons ci ratio: 3.477596e-03	ci left: 6.185472e-01	ci right 6.207032e-01	k: 483308	n:780000
KS ci ratio: 1.845321e-01	ci left: 5.248569e-04	ci right 6.327544e-04	k: 450	n:780000
TRIM41   780000 perm   380 sec   (2054 perm/sec)   p_kst 5.769231e-04   p_cons 6.196256e-01   p_joint 3.044872e-03

Joint ci ratio: 7.986161e-02	ci left: 2.919050e-03	ci right 3.163097e-03	k: 2401	n:790000
Cons ci ratio: 3.455212e-03	ci left: 6.185955e-01	ci right 6.207378e-01	k: 489537	n:790000
KS ci ratio: 1.825192e-01	ci left: 5.302900e-04	ci right 6.379838e-04	k: 460	n:790000
TRIM41   790000 perm   388 sec   (2038 perm/sec)   p_kst 5.822785e-04   p_cons 6.196671e-01   p_joint 3.039241e-03

Joint ci ratio: 7.935117e-02	ci left: 2.920541e-03	ci right 3.163080e-03	k: 2432	n:800000
Cons ci ratio: 3.434065e-03	ci left: 6.185313e-01	ci right 6.206603e-01	k: 495677	n:800000
KS ci ratio: 1.807629e-01	ci left: 5.344000e-04	ci right 6.417698e-04	k: 469	n:800000
TRIM41   800000 perm   396 sec   (2022 perm/sec)   p_kst 5.862500e-04   p_cons 6.195962e-01   p_joint 3.040000e-03

Joint ci ratio: 7.878628e-02	ci left: 2.926841e-03	ci right 3.168093e-03	k: 2467	n:810000
Cons ci ratio: 3.412676e-03	ci left: 6.185553e-01	ci right 6.206710e-01	k: 501887	n:810000
KS ci ratio: 1.790563e-01	ci left: 5.384133e-04	ci right 6.454575e-04	k: 478	n:810000
TRIM41   810000 perm   404 sec   (2007 perm/sec)   p_kst 5.901235e-04   p_cons 6.196136e-01   p_joint 3.045679e-03

Joint ci ratio: 7.823328e-02	ci left: 2.932993e-03	ci right 3.172978e-03	k: 2502	n:820000
Cons ci ratio: 3.391734e-03	ci left: 6.185714e-01	ci right 6.206741e-01	k: 508091	n:820000
KS ci ratio: 1.786841e-01	ci left: 5.341770e-04	ci right 6.401343e-04	k: 480	n:820000
TRIM41   820000 perm   412 sec   (1992 perm/sec)   p_kst 5.853659e-04   p_cons 6.196232e-01   p_joint 3.051220e-03

Joint ci ratio: 7.784575e-02	ci left: 2.927188e-03	ci right 3.165458e-03	k: 2527	n:830000
Cons ci ratio: 3.370967e-03	ci left: 6.186160e-01	ci right 6.207060e-01	k: 514319	n:830000
KS ci ratio: 1.770352e-01	ci left: 5.381019e-04	ci right 6.437474e-04	k: 489	n:830000
TRIM41   830000 perm   420 sec   (1977 perm/sec)   p_kst 5.891566e-04   p_cons 6.196614e-01   p_joint 3.044578e-03

Joint ci ratio: 7.744870e-02	ci left: 2.922692e-03	ci right 3.159327e-03	k: 2553	n:840000
Cons ci ratio: 3.350863e-03	ci left: 6.186191e-01	ci right 6.206967e-01	k: 520513	n:840000
KS ci ratio: 1.759611e-01	ci left: 5.385232e-04	ci right 6.435418e-04	k: 495	n:840000
TRIM41   840000 perm   430 sec   (1955 perm/sec)   p_kst 5.892857e-04   p_cons 6.196583e-01   p_joint 3.039286e-03

Joint ci ratio: 7.702773e-02	ci left: 2.920612e-03	ci right 3.155736e-03	k: 2581	n:850000
Cons ci ratio: 3.331257e-03	ci left: 6.186022e-01	ci right 6.206675e-01	k: 526690	n:850000
KS ci ratio: 1.752561e-01	ci left: 5.366867e-04	ci right 6.408833e-04	k: 499	n:850000
TRIM41   850000 perm   439 sec   (1936 perm/sec)   p_kst 5.870588e-04   p_cons 6.196353e-01   p_joint 3.036471e-03

Joint ci ratio: 7.649604e-02	ci left: 2.927709e-03	ci right 3.161705e-03	k: 2617	n:860000
Cons ci ratio: 3.312113e-03	ci left: 6.185683e-01	ci right 6.206216e-01	k: 532852	n:860000
KS ci ratio: 1.745594e-01	ci left: 5.348936e-04	ci right 6.382858e-04	k: 503	n:860000
TRIM41   860000 perm   448 sec   (1920 perm/sec)   p_kst 5.848837e-04   p_cons 6.195953e-01   p_joint 3.043023e-03

Joint ci ratio: 7.601832e-02	ci left: 2.931265e-03	ci right 3.164018e-03	k: 2650	n:870000
Cons ci ratio: 3.292501e-03	ci left: 6.186490e-01	ci right 6.206904e-01	k: 539113	n:870000
KS ci ratio: 1.730211e-01	ci left: 5.386404e-04	ci right 6.417434e-04	k: 512	n:870000
TRIM41   870000 perm   457 sec   (1902 perm/sec)   p_kst 5.885057e-04   p_cons 6.196701e-01   p_joint 3.045977e-03

Joint ci ratio: 7.554944e-02	ci left: 2.934744e-03	ci right 3.166273e-03	k: 2683	n:880000
Cons ci ratio: 3.273896e-03	ci left: 6.186325e-01	ci right 6.206622e-01	k: 545290	n:880000
KS ci ratio: 1.720181e-01	ci left: 5.390432e-04	ci right 6.415632e-04	k: 518	n:880000
TRIM41   880000 perm   466 sec   (1887 perm/sec)   p_kst 5.886364e-04   p_cons 6.196477e-01   p_joint 3.048864e-03

Joint ci ratio: 7.501992e-02	ci left: 2.943663e-03	ci right 3.174197e-03	k: 2721	n:890000
Cons ci ratio: 3.255214e-03	ci left: 6.186725e-01	ci right 6.206908e-01	k: 551517	n:890000
KS ci ratio: 1.713592e-01	ci left: 5.372878e-04	ci right 6.390420e-04	k: 522	n:890000
TRIM41   890000 perm   475 sec   (1873 perm/sec)   p_kst 5.865169e-04   p_cons 6.196820e-01   p_joint 3.057303e-03

Joint ci ratio: 7.470529e-02	ci left: 2.936032e-03	ci right 3.164962e-03	k: 2744	n:900000
Cons ci ratio: 3.237368e-03	ci left: 6.186361e-01	ci right 6.206432e-01	k: 557676	n:900000
KS ci ratio: 1.707078e-01	ci left: 5.355721e-04	ci right 6.365761e-04	k: 526	n:900000
TRIM41   900000 perm   485 sec   (1857 perm/sec)   p_kst 5.844444e-04   p_cons 6.196400e-01   p_joint 3.048889e-03

Joint ci ratio: 7.424674e-02	ci left: 2.940435e-03	ci right 3.168241e-03	k: 2778	n:910000
Cons ci ratio: 3.219586e-03	ci left: 6.186335e-01	ci right 6.206295e-01	k: 563865	n:910000
KS ci ratio: 1.700638e-01	ci left: 5.338948e-04	ci right 6.341637e-04	k: 530	n:910000
TRIM41   910000 perm   494 sec   (1842 perm/sec)   p_kst 5.824176e-04   p_cons 6.196319e-01   p_joint 3.052747e-03

Joint ci ratio: 7.371772e-02	ci left: 2.951149e-03	ci right 3.178085e-03	k: 2818	n:920000
Cons ci ratio: 3.201896e-03	ci left: 6.186603e-01	ci right 6.206454e-01	k: 570081	n:920000
KS ci ratio: 1.691110e-01	ci left: 5.343365e-04	ci right 6.340689e-04	k: 536	n:920000
TRIM41   920000 perm   504 sec   (1827 perm/sec)   p_kst 5.826087e-04   p_cons 6.196533e-01   p_joint 3.063043e-03

Joint ci ratio: 7.330279e-02	ci left: 2.953192e-03	ci right 3.178953e-03	k: 2850	n:930000
Cons ci ratio: 3.184515e-03	ci left: 6.186834e-01	ci right 6.206578e-01	k: 576294	n:930000
KS ci ratio: 1.683293e-01	ci left: 5.337403e-04	ci right 6.328541e-04	k: 541	n:930000
TRIM41   930000 perm   513 sec   (1813 perm/sec)   p_kst 5.817204e-04   p_cons 6.196710e-01   p_joint 3.064516e-03

Joint ci ratio: 7.290748e-02	ci left: 2.954151e-03	ci right 3.178716e-03	k: 2881	n:940000
Cons ci ratio: 3.167228e-03	ci left: 6.187337e-01	ci right 6.206975e-01	k: 582533	n:940000
KS ci ratio: 1.671004e-01	ci left: 5.362157e-04	ci right 6.349891e-04	k: 549	n:940000
TRIM41   940000 perm   523 sec   (1797 perm/sec)   p_kst 5.840426e-04   p_cons 6.197160e-01   p_joint 3.064894e-03

Joint ci ratio: 7.256848e-02	ci left: 2.950959e-03	ci right 3.174194e-03	k: 2908	n:950000
Cons ci ratio: 3.150410e-03	ci left: 6.187545e-01	ci right 6.207079e-01	k: 588745	n:950000
KS ci ratio: 1.660469e-01	ci left: 5.376326e-04	ci right 6.359802e-04	k: 556	n:950000
TRIM41   950000 perm   533 sec   (1783 perm/sec)   p_kst 5.852632e-04   p_cons 6.197316e-01   p_joint 3.061053e-03

Joint ci ratio: 7.227122e-02	ci left: 2.944766e-03	ci right 3.166582e-03	k: 2932	n:960000
Cons ci ratio: 3.134183e-03	ci left: 6.187259e-01	ci right 6.206692e-01	k: 594910	n:960000
KS ci ratio: 1.650132e-01	ci left: 5.390219e-04	ci right 6.369489e-04	k: 563	n:960000
TRIM41   960000 perm   542 sec   (1771 perm/sec)   p_kst 5.864583e-04   p_cons 6.196979e-01   p_joint 3.054167e-03

Joint ci ratio: 7.177093e-02	ci left: 2.955915e-03	ci right 3.176965e-03	k: 2973	n:970000
Cons ci ratio: 3.117351e-03	ci left: 6.188269e-01	ci right 6.207600e-01	k: 601200	n:970000
KS ci ratio: 1.634268e-01	ci left: 5.443392e-04	ci right 6.421881e-04	k: 574	n:970000
TRIM41   970000 perm   552 sec   (1758 perm/sec)   p_kst 5.917526e-04   p_cons 6.197938e-01   p_joint 3.064948e-03

Joint ci ratio: 7.130461e-02	ci left: 2.964838e-03	ci right 3.185055e-03	k: 3012	n:980000
Cons ci ratio: 3.101533e-03	ci left: 6.188125e-01	ci right 6.207358e-01	k: 607379	n:980000
KS ci ratio: 1.628614e-01	ci left: 5.426997e-04	ci right 6.398833e-04	k: 578	n:980000
TRIM41   980000 perm   562 sec   (1745 perm/sec)   p_kst 5.897959e-04   p_cons 6.197745e-01   p_joint 3.073469e-03

Joint ci ratio: 7.094059e-02	ci left: 2.965646e-03	ci right 3.184752e-03	k: 3043	n:990000
Cons ci ratio: 3.085867e-03	ci left: 6.188116e-01	ci right 6.207251e-01	k: 613571	n:990000
KS ci ratio: 1.621628e-01	ci left: 5.420630e-04	ci right 6.386756e-04	k: 583	n:990000
TRIM41   990000 perm   571 sec   (1733 perm/sec)   p_kst 5.888889e-04   p_cons 6.197687e-01   p_joint 3.073737e-03

Joint ci ratio: 7.054758e-02	ci left: 2.969388e-03	ci right 3.187506e-03	k: 3077	n:1000000
Cons ci ratio: 3.070286e-03	ci left: 6.188337e-01	ci right 6.207376e-01	k: 619786	n:1000000
KS ci ratio: 1.616105e-01	ci left: 5.404803e-04	ci right 6.364508e-04	k: 587	n:1000000
TRIM41   1000000 perm   581 sec   (1720 perm/sec)   p_kst 5.870000e-04   p_cons 6.197860e-01   p_joint 3.077000e-03

Joint ci ratio: 7.017234e-02	ci left: 2.972087e-03	ci right 3.189194e-03	k: 3110	n:1010000
Cons ci ratio: 3.055330e-03	ci left: 6.187950e-01	ci right 6.206895e-01	k: 625940	n:1010000
KS ci ratio: 1.610637e-01	ci left: 5.389294e-04	ci right 6.342695e-04	k: 591	n:1010000
TRIM41   1010000 perm   591 sec   (1709 perm/sec)   p_kst 5.851485e-04   p_cons 6.197426e-01   p_joint 3.079208e-03

Joint ci ratio: 6.986993e-02	ci left: 2.968956e-03	ci right 3.184862e-03	k: 3137	n:1020000
Cons ci ratio: 3.040850e-03	ci left: 6.187168e-01	ci right 6.206021e-01	k: 632053	n:1020000
KS ci ratio: 1.607926e-01	ci left: 5.355276e-04	ci right 6.300910e-04	k: 593	n:1020000
TRIM41   1020000 perm   601 sec   (1697 perm/sec)   p_kst 5.813725e-04   p_cons 6.196598e-01   p_joint 3.075490e-03

Joint ci ratio: 6.945044e-02	ci left: 2.976382e-03	ci right 3.191476e-03	k: 3175	n:1030000
Cons ci ratio: 3.026038e-03	ci left: 6.187238e-01	ci right 6.205998e-01	k: 638252	n:1030000
KS ci ratio: 1.597205e-01	ci left: 5.377838e-04	ci right 6.320517e-04	k: 601	n:1030000
TRIM41   1030000 perm   612 sec   (1682 perm/sec)   p_kst 5.834951e-04   p_cons 6.196621e-01   p_joint 3.082524e-03

Joint ci ratio: 6.913558e-02	ci left: 2.975164e-03	ci right 3.189157e-03	k: 3204	n:1040000
Cons ci ratio: 3.010954e-03	ci left: 6.188066e-01	ci right 6.206735e-01	k: 644530	n:1040000
KS ci ratio: 1.591926e-01	ci left: 5.363055e-04	ci right 6.299739e-04	k: 605	n:1040000
TRIM41   1040000 perm   623 sec   (1671 perm/sec)   p_kst 5.817308e-04   p_cons 6.197404e-01   p_joint 3.080769e-03

Joint ci ratio: 6.879297e-02	ci left: 2.976780e-03	ci right 3.189785e-03	k: 3236	n:1050000
Cons ci ratio: 2.996869e-03	ci left: 6.187659e-01	ci right 6.206239e-01	k: 650680	n:1050000
KS ci ratio: 1.582810e-01	ci left: 5.375997e-04	ci right 6.309053e-04	k: 612	n:1050000
TRIM41   1050000 perm   633 sec   (1660 perm/sec)   p_kst 5.828571e-04   p_cons 6.196952e-01   p_joint 3.081905e-03

Joint ci ratio: 6.840294e-02	ci left: 2.983005e-03	ci right 3.195197e-03	k: 3273	n:1060000
Cons ci ratio: 2.982920e-03	ci left: 6.187354e-01	ci right 6.205847e-01	k: 656840	n:1060000
KS ci ratio: 1.571315e-01	ci left: 5.406836e-04	ci right 6.337787e-04	k: 621	n:1060000
TRIM41   1060000 perm   644 sec   (1647 perm/sec)   p_kst 5.858491e-04   p_cons 6.196604e-01   p_joint 3.087736e-03

Joint ci ratio: 6.810206e-02	ci left: 2.981766e-03	ci right 3.192901e-03	k: 3302	n:1070000
Cons ci ratio: 2.968888e-03	ci left: 6.187495e-01	ci right 6.205901e-01	k: 663047	n:1070000
KS ci ratio: 1.565038e-01	ci left: 5.401200e-04	ci right 6.327117e-04	k: 626	n:1070000
TRIM41   1070000 perm   654 sec   (1635 perm/sec)   p_kst 5.850467e-04   p_cons 6.196701e-01   p_joint 3.085981e-03

Joint ci ratio: 6.779490e-02	ci left: 2.981463e-03	ci right 3.191586e-03	k: 3332	n:1080000
Cons ci ratio: 2.955074e-03	ci left: 6.187596e-01	ci right 6.205916e-01	k: 669250	n:1080000
KS ci ratio: 1.561309e-01	ci left: 5.377879e-04	ci right 6.297396e-04	k: 629	n:1080000
TRIM41   1080000 perm   665 sec   (1623 perm/sec)   p_kst 5.824074e-04   p_cons 6.196759e-01   p_joint 3.085185e-03

Joint ci ratio: 6.749187e-02	ci left: 2.981168e-03	ci right 3.190294e-03	k: 3362	n:1090000
Cons ci ratio: 2.941269e-03	ci left: 6.187989e-01	ci right 6.206225e-01	k: 675485	n:1090000
KS ci ratio: 1.552706e-01	ci left: 5.390259e-04	ci right 6.306342e-04	k: 636	n:1090000
TRIM41   1090000 perm   677 sec   (1611 perm/sec)   p_kst 5.834862e-04   p_cons 6.197110e-01   p_joint 3.084404e-03

Joint ci ratio: 6.724257e-02	ci left: 2.976410e-03	ci right 3.184402e-03	k: 3387	n:1100000
Cons ci ratio: 2.928050e-03	ci left: 6.187738e-01	ci right 6.205892e-01	k: 681650	n:1100000
KS ci ratio: 1.537095e-01	ci left: 5.454871e-04	ci right 6.371757e-04	k: 649	n:1100000
TRIM41   1100000 perm   687 sec   (1601 perm/sec)   p_kst 5.900000e-04   p_cons 6.196818e-01   p_joint 3.079091e-03

Joint ci ratio: 6.696651e-02	ci left: 2.974398e-03	ci right 3.181362e-03	k: 3415	n:1110000
Cons ci ratio: 2.914479e-03	ci left: 6.188349e-01	ci right 6.206420e-01	k: 687910	n:1110000
KS ci ratio: 1.527721e-01	ci left: 5.475037e-04	ci right 6.389186e-04	k: 657	n:1110000
TRIM41   1110000 perm   698 sec   (1591 perm/sec)   p_kst 5.918919e-04   p_cons 6.197387e-01   p_joint 3.076577e-03

Joint ci ratio: 6.679115e-02	ci left: 2.963643e-03	ci right 3.169298e-03	k: 3433	n:1120000
Cons ci ratio: 2.901441e-03	ci left: 6.188386e-01	ci right 6.206376e-01	k: 694107	n:1120000
KS ci ratio: 1.525408e-01	ci left: 5.443328e-04	ci right 6.350680e-04	k: 659	n:1120000
TRIM41   1120000 perm   708 sec   (1581 perm/sec)   p_kst 5.883929e-04   p_cons 6.197384e-01   p_joint 3.065179e-03

Joint ci ratio: 6.653986e-02	ci left: 2.960041e-03	ci right 3.164643e-03	k: 3459	n:1130000
Cons ci ratio: 2.889325e-03	ci left: 6.187201e-01	ci right 6.205112e-01	k: 700166	n:1130000
KS ci ratio: 1.515110e-01	ci left: 5.471773e-04	ci right 6.377152e-04	k: 668	n:1130000
TRIM41   1130000 perm   719 sec   (1571 perm/sec)   p_kst 5.911504e-04   p_cons 6.196159e-01   p_joint 3.061062e-03

Joint ci ratio: 6.637740e-02	ci left: 2.948739e-03	ci right 3.152044e-03	k: 3476	n:1140000
Cons ci ratio: 2.877102e-03	ci left: 6.186458e-01	ci right 6.204291e-01	k: 706273	n:1140000
KS ci ratio: 1.513982e-01	ci left: 5.432214e-04	ci right 6.330317e-04	k: 669	n:1140000
TRIM41   1140000 perm   730 sec   (1561 perm/sec)   p_kst 5.868421e-04   p_cons 6.195377e-01   p_joint 3.049123e-03

Joint ci ratio: 6.603626e-02	ci left: 2.953885e-03	ci right 3.156457e-03	k: 3512	n:1150000
Cons ci ratio: 2.864673e-03	ci left: 6.186319e-01	ci right 6.204075e-01	k: 712448	n:1150000
KS ci ratio: 1.505022e-01	ci left: 5.451916e-04	ci right 6.347461e-04	k: 677	n:1150000
TRIM41   1150000 perm   742 sec   (1549 perm/sec)   p_kst 5.886957e-04   p_cons 6.195200e-01   p_joint 3.053913e-03

Joint ci ratio: 6.589617e-02	ci left: 2.941137e-03	ci right 3.142391e-03	k: 3527	n:1160000
Cons ci ratio: 2.852101e-03	ci left: 6.186684e-01	ci right 6.204362e-01	k: 718681	n:1160000
KS ci ratio: 1.500604e-01	ci left: 5.438102e-04	ci right 6.328520e-04	k: 681	n:1160000
TRIM41   1160000 perm   754 sec   (1539 perm/sec)   p_kst 5.870690e-04   p_cons 6.195526e-01   p_joint 3.040517e-03

Joint ci ratio: 6.559005e-02	ci left: 2.943741e-03	ci right 3.144202e-03	k: 3560	n:1170000
Cons ci ratio: 2.839678e-03	ci left: 6.187068e-01	ci right 6.204670e-01	k: 724917	n:1170000
KS ci ratio: 1.492961e-01	ci left: 5.449211e-04	ci right 6.336498e-04	k: 688	n:1170000
TRIM41   1170000 perm   765 sec   (1530 perm/sec)   p_kst 5.880342e-04   p_cons 6.195872e-01   p_joint 3.042735e-03

Joint ci ratio: 6.532464e-02	ci left: 2.942968e-03	ci right 3.142535e-03	k: 3589	n:1180000
Cons ci ratio: 2.827294e-03	ci left: 6.187649e-01	ci right 6.205176e-01	k: 731177	n:1180000
KS ci ratio: 1.484367e-01	ci left: 5.468303e-04	ci right 6.353119e-04	k: 696	n:1180000
TRIM41   1180000 perm   776 sec   (1520 perm/sec)   p_kst 5.898305e-04   p_cons 6.196415e-01   p_joint 3.041525e-03

Joint ci ratio: 6.495449e-02	ci left: 2.952130e-03	ci right 3.151141e-03	k: 3630	n:1190000
Cons ci ratio: 2.814950e-03	ci left: 6.188422e-01	ci right 6.205875e-01	k: 737461	n:1190000
KS ci ratio: 1.476968e-01	ci left: 5.478996e-04	ci right 6.360732e-04	k: 703	n:1190000
TRIM41   1190000 perm   789 sec   (1508 perm/sec)   p_kst 5.907563e-04   p_cons 6.197151e-01   p_joint 3.050420e-03

Joint ci ratio: 6.466125e-02	ci left: 2.954583e-03	ci right 3.152827e-03	k: 3663	n:1200000
Cons ci ratio: 2.803886e-03	ci left: 6.187298e-01	ci right 6.204679e-01	k: 743519	n:1200000
KS ci ratio: 1.471751e-01	ci left: 5.473467e-04	ci right 6.350929e-04	k: 708	n:1200000
TRIM41   1200000 perm   800 sec   (1499 perm/sec)   p_kst 5.900000e-04   p_cons 6.195992e-01   p_joint 3.052500e-03

Joint ci ratio: 6.443317e-02	ci left: 2.951306e-03	ci right 3.148605e-03	k: 3689	n:1210000
Cons ci ratio: 2.792163e-03	ci left: 6.187525e-01	ci right 6.204833e-01	k: 749738	n:1210000
KS ci ratio: 1.464539e-01	ci left: 5.483958e-04	ci right 6.358417e-04	k: 715	n:1210000
TRIM41   1210000 perm   812 sec   (1489 perm/sec)   p_kst 5.909091e-04   p_cons 6.196182e-01   p_joint 3.048760e-03

Joint ci ratio: 6.403486e-02	ci left: 2.964215e-03	ci right 3.161107e-03	k: 3735	n:1220000
Cons ci ratio: 2.780475e-03	ci left: 6.187936e-01	ci right 6.205173e-01	k: 755980	n:1220000
KS ci ratio: 1.454415e-01	ci left: 5.517982e-04	ci right 6.391256e-04	k: 725	n:1220000
TRIM41   1220000 perm   824 sec   (1480 perm/sec)   p_kst 5.942623e-04   p_cons 6.196557e-01   p_joint 3.061475e-03

Joint ci ratio: 6.371994e-02	ci left: 2.969717e-03	ci right 3.165968e-03	k: 3772	n:1230000
Cons ci ratio: 2.769133e-03	ci left: 6.187999e-01	ci right 6.205166e-01	k: 762180	n:1230000
KS ci ratio: 1.445481e-01	ci left: 5.543637e-04	ci right 6.415117e-04	k: 734	n:1230000
TRIM41   1230000 perm   836 sec   (1471 perm/sec)   p_kst 5.967480e-04   p_cons 6.196585e-01   p_joint 3.066667e-03

Joint ci ratio: 6.364464e-02	ci left: 2.952909e-03	ci right 3.147811e-03	k: 3781	n:1240000
Cons ci ratio: 2.757966e-03	ci left: 6.187997e-01	ci right 6.205094e-01	k: 768372	n:1240000
KS ci ratio: 1.440590e-01	ci left: 5.537797e-04	ci right 6.405160e-04	k: 739	n:1240000
TRIM41   1240000 perm   849 sec   (1461 perm/sec)   p_kst 5.959677e-04   p_cons 6.196548e-01   p_joint 3.049194e-03

Joint ci ratio: 6.305449e-02	ci left: 2.985188e-03	ci right 3.180326e-03	k: 3852	n:1250000
Cons ci ratio: 2.746994e-03	ci left: 6.187891e-01	ci right 6.204920e-01	k: 774551	n:1250000
KS ci ratio: 1.434785e-01	ci left: 5.539768e-04	ci right 6.403644e-04	k: 745	n:1250000
TRIM41   1250000 perm   861 sec   (1451 perm/sec)   p_kst 5.960000e-04   p_cons 6.196408e-01   p_joint 3.081600e-03

Joint ci ratio: 6.285919e-02	ci left: 2.980243e-03	ci right 3.174433e-03	k: 3876	n:1260000
Cons ci ratio: 2.736188e-03	ci left: 6.187723e-01	ci right 6.204684e-01	k: 780722	n:1260000
KS ci ratio: 1.429050e-01	ci left: 5.541715e-04	ci right 6.402145e-04	k: 751	n:1260000
TRIM41   1260000 perm   875 sec   (1441 perm/sec)   p_kst 5.960317e-04   p_cons 6.196206e-01   p_joint 3.076190e-03

Joint ci ratio: 6.294143e-02	ci left: 2.949025e-03	ci right 3.141441e-03	k: 3866	n:1270000
Cons ci ratio: 2.725082e-03	ci left: 6.188298e-01	ci right 6.205192e-01	k: 786987	n:1270000
KS ci ratio: 1.424323e-01	ci left: 5.536044e-04	ci right 6.392509e-04	k: 756	n:1270000
TRIM41   1270000 perm   888 sec   (1431 perm/sec)   p_kst 5.952756e-04   p_cons 6.196748e-01   p_joint 3.044094e-03

Joint ci ratio: 6.282821e-02	ci left: 2.936751e-03	ci right 3.128009e-03	k: 3880	n:1280000
Cons ci ratio: 2.714766e-03	ci left: 6.187724e-01	ci right 6.204552e-01	k: 793106	n:1280000
KS ci ratio: 1.422447e-01	ci left: 5.507862e-04	ci right 6.358750e-04	k: 758	n:1280000
TRIM41   1280000 perm   901 sec   (1421 perm/sec)   p_kst 5.921875e-04   p_cons 6.196141e-01   p_joint 3.031250e-03

Joint ci ratio: 6.254670e-02	ci left: 2.940692e-03	ci right 3.131318e-03	k: 3915	n:1290000
Cons ci ratio: 2.704099e-03	ci left: 6.187972e-01	ci right 6.204735e-01	k: 799330	n:1290000
KS ci ratio: 1.419646e-01	ci left: 5.487594e-04	ci right 6.333540e-04	k: 761	n:1290000
TRIM41   1290000 perm   916 sec   (1409 perm/sec)   p_kst 5.899225e-04   p_cons 6.196357e-01   p_joint 3.034884e-03

Joint ci ratio: 6.227684e-02	ci left: 2.943817e-03	ci right 3.133792e-03	k: 3949	n:1300000
Cons ci ratio: 2.693865e-03	ci left: 6.187679e-01	ci right 6.204377e-01	k: 805484	n:1300000
KS ci ratio: 1.414090e-01	ci left: 5.489899e-04	ci right 6.332609e-04	k: 767	n:1300000
TRIM41   1300000 perm   930 sec   (1398 perm/sec)   p_kst 5.900000e-04   p_cons 6.196031e-01   p_joint 3.037692e-03

Joint ci ratio: 6.201044e-02	ci left: 2.946896e-03	ci right 3.136228e-03	k: 3983	n:1310000
Cons ci ratio: 2.683468e-03	ci left: 6.187879e-01	ci right 6.204513e-01	k: 811702	n:1310000
KS ci ratio: 1.408598e-01	ci left: 5.492176e-04	ci right 6.331686e-04	k: 773	n:1310000
TRIM41   1310000 perm   945 sec   (1387 perm/sec)   p_kst 5.900763e-04   p_cons 6.196198e-01   p_joint 3.040458e-03

Joint ci ratio: 6.188664e-02	ci left: 2.936504e-03	ci right 3.124778e-03	k: 3999	n:1320000
Cons ci ratio: 2.673100e-03	ci left: 6.188235e-01	ci right 6.204806e-01	k: 817941	n:1320000
KS ci ratio: 1.405878e-01	ci left: 5.472495e-04	ci right 6.307246e-04	k: 776	n:1320000
TRIM41   1320000 perm   963 sec   (1371 perm/sec)   p_kst 5.878788e-04   p_cons 6.196523e-01   p_joint 3.029545e-03

Joint ci ratio: 6.167122e-02	ci left: 2.935153e-03	ci right 3.122661e-03	k: 4027	n:1330000
Cons ci ratio: 2.662821e-03	ci left: 6.188638e-01	ci right 6.205146e-01	k: 824187	n:1330000
KS ci ratio: 1.400481e-01	ci left: 5.474878e-04	ci right 6.306519e-04	k: 782	n:1330000
TRIM41   1330000 perm   979 sec   (1359 perm/sec)   p_kst 5.879699e-04   p_cons 6.196895e-01   p_joint 3.027820e-03

Joint ci ratio: 6.148084e-02	ci left: 2.931618e-03	ci right 3.118302e-03	k: 4052	n:1340000
Cons ci ratio: 2.653156e-03	ci left: 6.188154e-01	ci right 6.204602e-01	k: 830315	n:1340000
KS ci ratio: 1.394262e-01	ci left: 5.484433e-04	ci right 6.313519e-04	k: 789	n:1340000
TRIM41   1340000 perm   994 sec   (1348 perm/sec)   p_kst 5.888060e-04   p_cons 6.196381e-01   p_joint 3.023881e-03

Joint ci ratio: 6.121698e-02	ci left: 2.935431e-03	ci right 3.121527e-03	k: 4087	n:1350000
Cons ci ratio: 2.643488e-03	ci left: 6.187871e-01	ci right 6.204257e-01	k: 836469	n:1350000
KS ci ratio: 1.388997e-01	ci left: 5.486705e-04	ci right 6.312743e-04	k: 795	n:1350000
TRIM41   1350000 perm   1009 sec   (1337 perm/sec)   p_kst 5.888889e-04   p_cons 6.196067e-01   p_joint 3.027407e-03

Joint ci ratio: 6.094907e-02	ci left: 2.939913e-03	ci right 3.125449e-03	k: 4123	n:1360000
Cons ci ratio: 2.633747e-03	ci left: 6.187908e-01	ci right 6.204234e-01	k: 842666	n:1360000
KS ci ratio: 1.381209e-01	ci left: 5.510245e-04	ci right 6.334793e-04	k: 804	n:1360000
TRIM41   1360000 perm   1026 sec   (1326 perm/sec)   p_kst 5.911765e-04   p_cons 6.196074e-01   p_joint 3.031618e-03

Joint ci ratio: 6.070661e-02	ci left: 2.942175e-03	ci right 3.127089e-03	k: 4156	n:1370000
Cons ci ratio: 2.623943e-03	ci left: 6.188251e-01	ci right 6.204517e-01	k: 848905	n:1370000
KS ci ratio: 1.376090e-01	ci left: 5.512309e-04	ci right 6.333859e-04	k: 810	n:1370000
TRIM41   1370000 perm   1041 sec   (1316 perm/sec)   p_kst 5.912409e-04   p_cons 6.196387e-01   p_joint 3.033577e-03

Joint ci ratio: 6.051775e-02	ci left: 2.939410e-03	ci right 3.123555e-03	k: 4182	n:1380000
Cons ci ratio: 2.614786e-03	ci left: 6.187618e-01	ci right 6.203826e-01	k: 855010	n:1380000
KS ci ratio: 1.370189e-01	ci left: 5.521347e-04	ci right 6.340428e-04	k: 817	n:1380000
TRIM41   1380000 perm   1056 sec   (1307 perm/sec)   p_kst 5.920290e-04   p_cons 6.195725e-01   p_joint 3.030435e-03

Joint ci ratio: 6.035941e-02	ci left: 2.933851e-03	ci right 3.117150e-03	k: 4204	n:1390000
Cons ci ratio: 2.605350e-03	ci left: 6.187671e-01	ci right 6.203820e-01	k: 861209	n:1390000
KS ci ratio: 1.365191e-01	ci left: 5.523314e-04	ci right 6.339455e-04	k: 823	n:1390000
TRIM41   1390000 perm   1072 sec   (1296 perm/sec)   p_kst 5.920863e-04   p_cons 6.195748e-01   p_joint 3.024460e-03

Joint ci ratio: 6.013101e-02	ci left: 2.935408e-03	ci right 3.118086e-03	k: 4236	n:1400000
Cons ci ratio: 2.596016e-03	ci left: 6.187723e-01	ci right 6.203815e-01	k: 867408	n:1400000
KS ci ratio: 1.356980e-01	ci left: 5.552859e-04	ci right 6.368031e-04	k: 833	n:1400000
TRIM41   1400000 perm   1086 sec   (1289 perm/sec)   p_kst 5.950000e-04   p_cons 6.195771e-01   p_joint 3.025714e-03

Joint ci ratio: 5.994745e-02	ci left: 2.932752e-03	ci right 3.114689e-03	k: 4262	n:1410000
Cons ci ratio: 2.586766e-03	ci left: 6.187803e-01	ci right 6.203837e-01	k: 873611	n:1410000
KS ci ratio: 1.354548e-01	ci left: 5.534031e-04	ci right 6.344866e-04	k: 836	n:1410000
TRIM41   1410000 perm   1100 sec   (1282 perm/sec)   p_kst 5.929078e-04   p_cons 6.195823e-01   p_joint 3.022695e-03

Joint ci ratio: 5.970277e-02	ci left: 2.936378e-03	ci right 3.117771e-03	k: 4297	n:1420000
Cons ci ratio: 2.577621e-03	ci left: 6.187868e-01	ci right 6.203845e-01	k: 879812	n:1420000
KS ci ratio: 1.350520e-01	ci left: 5.529079e-04	ci right 6.336586e-04	k: 841	n:1420000
TRIM41   1420000 perm   1114 sec   (1275 perm/sec)   p_kst 5.922535e-04   p_cons 6.195859e-01   p_joint 3.026056e-03

Joint ci ratio: 5.948860e-02	ci left: 2.937199e-03	ci right 3.117970e-03	k: 4328	n:1430000
Cons ci ratio: 2.568432e-03	ci left: 6.188191e-01	ci right 6.204112e-01	k: 886050	n:1430000
KS ci ratio: 1.338645e-01	ci left: 5.591782e-04	ci right 6.400694e-04	k: 856	n:1430000
TRIM41   1430000 perm   1131 sec   (1264 perm/sec)   p_kst 5.986014e-04   p_cons 6.196154e-01   p_joint 3.026573e-03

Joint ci ratio: 5.923586e-02	ci left: 2.942115e-03	ci right 3.122392e-03	k: 4365	n:1440000
Cons ci ratio: 2.559420e-03	ci left: 6.188363e-01	ci right 6.204229e-01	k: 892267	n:1440000
KS ci ratio: 1.333983e-01	ci left: 5.593224e-04	ci right 6.399304e-04	k: 862	n:1440000
TRIM41   1440000 perm   1147 sec   (1256 perm/sec)   p_kst 5.986111e-04   p_cons 6.196299e-01   p_joint 3.031250e-03

Joint ci ratio: 5.899303e-02	ci left: 2.946286e-03	ci right 3.126053e-03	k: 4401	n:1450000
Cons ci ratio: 2.550312e-03	ci left: 6.188886e-01	ci right 6.204696e-01	k: 898535	n:1450000
KS ci ratio: 1.323289e-01	ci left: 5.647994e-04	ci right 6.454929e-04	k: 876	n:1450000
TRIM41   1450000 perm   1166 sec   (1244 perm/sec)   p_kst 6.041379e-04   p_cons 6.196793e-01   p_joint 3.035172e-03

Joint ci ratio: 5.881300e-02	ci left: 2.944326e-03	ci right 3.123407e-03	k: 4428	n:1460000
Cons ci ratio: 2.541717e-03	ci left: 6.188626e-01	ci right 6.204383e-01	k: 904690	n:1460000
KS ci ratio: 1.318786e-01	ci left: 5.649047e-04	ci right 6.453170e-04	k: 882	n:1460000
TRIM41   1460000 perm   1184 sec   (1233 perm/sec)   p_kst 6.041096e-04   p_cons 6.196507e-01   p_joint 3.032877e-03

Joint ci ratio: 5.866764e-02	ci left: 2.939043e-03	ci right 3.117346e-03	k: 4450	n:1470000
Cons ci ratio: 2.533154e-03	ci left: 6.188473e-01	ci right 6.204176e-01	k: 910860	n:1470000
KS ci ratio: 1.312851e-01	ci left: 5.663248e-04	ci right 6.465483e-04	k: 890	n:1470000
TRIM41   1470000 perm   1203 sec   (1222 perm/sec)   p_kst 6.054422e-04   p_cons 6.196327e-01   p_joint 3.027211e-03

Joint ci ratio: 5.852335e-02	ci left: 2.933831e-03	ci right 3.111365e-03	k: 4472	n:1480000
Cons ci ratio: 2.524934e-03	ci left: 6.187842e-01	ci right 6.203492e-01	k: 916959	n:1480000
KS ci ratio: 1.309183e-01	ci left: 5.657659e-04	ci right 6.456688e-04	k: 895	n:1480000
TRIM41   1480000 perm   1221 sec   (1212 perm/sec)   p_kst 6.047297e-04   p_cons 6.195669e-01   p_joint 3.021622e-03

Joint ci ratio: 6.666118e-02	ci left: 2.238236e-03	ci right 2.393239e-03	k: 3449	n:1490000
Cons ci ratio: 2.516804e-03	ci left: 6.187199e-01	ci right 6.202797e-01	k: 923055	n:1490000
KS ci ratio: 1.303377e-01	ci left: 5.671625e-04	ci right 6.468799e-04	k: 903	n:1490000
TRIM41   1490000 perm   1239 sec   (1202 perm/sec)   p_kst 6.060403e-04   p_cons 6.195000e-01   p_joint 2.314765e-03

Joint ci ratio: 6.644967e-02	ci left: 2.237737e-03	ci right 2.392195e-03	k: 3471	n:1500000
Cons ci ratio: 2.508489e-03	ci left: 6.187058e-01	ci right 6.202604e-01	k: 929225	n:1500000
KS ci ratio: 1.299787e-01	ci left: 5.666062e-04	ci right 6.460092e-04	k: 908	n:1500000
TRIM41   1500000 perm   1258 sec   (1192 perm/sec)   p_kst 6.053333e-04   p_cons 6.194833e-01   p_joint 2.314000e-03

Joint ci ratio: 6.626869e-02	ci left: 2.235291e-03	ci right 2.389144e-03	k: 3490	n:1510000
Cons ci ratio: 2.500576e-03	ci left: 6.186316e-01	ci right 6.201811e-01	k: 935304	n:1510000
KS ci ratio: 1.297649e-01	ci left: 5.647760e-04	ci right 6.437823e-04	k: 911	n:1510000
TRIM41   1510000 perm   1276 sec   (1183 perm/sec)   p_kst 6.033113e-04   p_cons 6.194066e-01   p_joint 2.311258e-03

Joint ci ratio: 6.615533e-02	ci left: 2.228349e-03	ci right 2.381452e-03	k: 3502	n:1520000
Cons ci ratio: 2.492180e-03	ci left: 6.186638e-01	ci right 6.202081e-01	k: 941543	n:1520000
KS ci ratio: 1.293402e-01	ci left: 5.648798e-04	ci right 6.436221e-04	k: 917	n:1520000
TRIM41   1520000 perm   1291 sec   (1178 perm/sec)   p_kst 6.032895e-04   p_cons 6.194362e-01   p_joint 2.303947e-03

Joint ci ratio: 6.589240e-02	ci left: 2.231784e-03	ci right 2.384489e-03	k: 3530	n:1530000
Cons ci ratio: 2.483917e-03	ci left: 6.186863e-01	ci right 6.202256e-01	k: 947768	n:1530000
KS ci ratio: 1.287106e-01	ci left: 5.668803e-04	ci right 6.454875e-04	k: 926	n:1530000
TRIM41   1530000 perm   1306 sec   (1171 perm/sec)   p_kst 6.052288e-04   p_cons 6.194562e-01   p_joint 2.307190e-03

Joint ci ratio: 6.566033e-02	ci left: 2.233258e-03	ci right 2.385506e-03	k: 3555	n:1540000
Cons ci ratio: 2.475885e-03	ci left: 6.186800e-01	ci right 6.202143e-01	k: 953949	n:1540000
KS ci ratio: 1.282961e-01	ci left: 5.669701e-04	ci right 6.453173e-04	k: 932	n:1540000
TRIM41   1540000 perm   1324 sec   (1163 perm/sec)   p_kst 6.051948e-04   p_cons 6.194474e-01   p_joint 2.308442e-03

Joint ci ratio: 6.544901e-02	ci left: 2.233446e-03	ci right 2.385198e-03	k: 3578	n:1550000
Cons ci ratio: 2.467803e-03	ci left: 6.186983e-01	ci right 6.202277e-01	k: 960168	n:1550000
KS ci ratio: 1.277495e-01	ci left: 5.683083e-04	ci right 6.464805e-04	k: 940	n:1550000
TRIM41   1550000 perm   1343 sec   (1154 perm/sec)   p_kst 6.064516e-04   p_cons 6.194632e-01   p_joint 2.308387e-03

Joint ci ratio: 6.523065e-02	ci left: 2.234262e-03	ci right 2.385544e-03	k: 3602	n:1560000
Cons ci ratio: 2.460234e-03	ci left: 6.186331e-01	ci right 6.201575e-01	k: 966257	n:1560000
KS ci ratio: 1.272098e-01	ci left: 5.696300e-04	ci right 6.476280e-04	k: 948	n:1560000
TRIM41   1560000 perm   1360 sec   (1147 perm/sec)   p_kst 6.076923e-04   p_cons 6.193955e-01   p_joint 2.308974e-03

Joint ci ratio: 6.497855e-02	ci left: 2.237575e-03	ci right 2.388474e-03	k: 3630	n:1570000
Cons ci ratio: 2.452333e-03	ci left: 6.186457e-01	ci right 6.201653e-01	k: 972467	n:1570000
KS ci ratio: 1.268096e-01	ci left: 5.697020e-04	ci right 6.474460e-04	k: 954	n:1570000
TRIM41   1570000 perm   1375 sec   (1141 perm/sec)   p_kst 6.076433e-04   p_cons 6.194057e-01   p_joint 2.312102e-03

Joint ci ratio: 6.474709e-02	ci left: 2.239602e-03	ci right 2.390079e-03	k: 3656	n:1580000
Cons ci ratio: 2.444337e-03	ci left: 6.186911e-01	ci right 6.202059e-01	k: 978729	n:1580000
KS ci ratio: 1.263474e-01	ci left: 5.703864e-04	ci right 6.479188e-04	k: 961	n:1580000
TRIM41   1580000 perm   1392 sec   (1135 perm/sec)   p_kst 6.082278e-04   p_cons 6.194487e-01   p_joint 2.313924e-03

Joint ci ratio: 6.450931e-02	ci left: 2.242224e-03	ci right 2.392303e-03	k: 3683	n:1590000
Cons ci ratio: 2.436692e-03	ci left: 6.186832e-01	ci right 6.201931e-01	k: 984907	n:1590000
KS ci ratio: 1.259552e-01	ci left: 5.704536e-04	ci right 6.477364e-04	k: 967	n:1590000
TRIM41   1590000 perm   1408 sec   (1129 perm/sec)   p_kst 6.081761e-04   p_cons 6.194384e-01   p_joint 2.316352e-03

Joint ci ratio: 6.424811e-02	ci left: 2.246658e-03	ci right 2.396403e-03	k: 3713	n:1600000
Cons ci ratio: 2.429167e-03	ci left: 6.186659e-01	ci right 6.201712e-01	k: 991070	n:1600000
KS ci ratio: 1.253094e-01	ci left: 5.729419e-04	ci right 6.501344e-04	k: 977	n:1600000
TRIM41   1600000 perm   1425 sec   (1123 perm/sec)   p_kst 6.106250e-04   p_cons 6.194188e-01   p_joint 2.320625e-03

Joint ci ratio: 6.404151e-02	ci left: 2.247371e-03	ci right 2.396664e-03	k: 3737	n:1610000
Cons ci ratio: 2.421391e-03	ci left: 6.187110e-01	ci right 6.202116e-01	k: 997333	n:1610000
KS ci ratio: 1.249904e-01	ci left: 5.723916e-04	ci right 6.492990e-04	k: 982	n:1610000
TRIM41   1610000 perm   1443 sec   (1116 perm/sec)   p_kst 6.099379e-04   p_cons 6.194615e-01   p_joint 2.321118e-03

Joint ci ratio: 6.382838e-02	ci left: 2.248684e-03	ci right 2.397548e-03	k: 3762	n:1620000
Cons ci ratio: 2.413883e-03	ci left: 6.187179e-01	ci right 6.202138e-01	k: 1003535	n:1620000
KS ci ratio: 1.247369e-01	ci left: 5.712503e-04	ci right 6.478373e-04	k: 986	n:1620000
TRIM41   1620000 perm   1457 sec   (1112 perm/sec)   p_kst 6.086420e-04   p_cons 6.194660e-01   p_joint 2.322222e-03

Joint ci ratio: 6.358373e-02	ci left: 2.252397e-03	ci right 2.400914e-03	k: 3791	n:1630000
Cons ci ratio: 2.406269e-03	ci left: 6.187591e-01	ci right 6.202503e-01	k: 1009793	n:1630000
KS ci ratio: 1.244222e-01	ci left: 5.707176e-04	ci right 6.470258e-04	k: 991	n:1630000
TRIM41   1630000 perm   1475 sec   (1105 perm/sec)   p_kst 6.079755e-04   p_cons 6.195049e-01   p_joint 2.325767e-03

Joint ci ratio: 6.338345e-02	ci left: 2.253064e-03	ci right 2.401141e-03	k: 3815	n:1640000
Cons ci ratio: 2.398993e-03	ci left: 6.187473e-01	ci right 6.202340e-01	k: 1015965	n:1640000
KS ci ratio: 1.241099e-01	ci left: 5.701916e-04	ci right 6.462241e-04	k: 996	n:1640000
TRIM41   1640000 perm   1491 sec   (1100 perm/sec)   p_kst 6.073171e-04   p_cons 6.194909e-01   p_joint 2.326220e-03

Joint ci ratio: 6.319330e-02	ci left: 2.253128e-03	ci right 2.400748e-03	k: 3838	n:1650000
Cons ci ratio: 2.391807e-03	ci left: 6.187308e-01	ci right 6.202130e-01	k: 1022129	n:1650000
KS ci ratio: 1.236764e-01	ci left: 5.708468e-04	ci right 6.466814e-04	k: 1003	n:1650000
TRIM41   1650000 perm   1508 sec   (1094 perm/sec)   p_kst 6.078788e-04   p_cons 6.194721e-01   p_joint 2.326061e-03

Joint ci ratio: 6.301303e-02	ci left: 2.252599e-03	ci right 2.399748e-03	k: 3860	n:1660000
Cons ci ratio: 2.384649e-03	ci left: 6.187217e-01	ci right 6.201995e-01	k: 1028305	n:1660000
KS ci ratio: 1.231257e-01	ci left: 5.726624e-04	ci right 6.483746e-04	k: 1012	n:1660000
TRIM41   1660000 perm   1525 sec   (1088 perm/sec)   p_kst 6.096386e-04   p_cons 6.194608e-01   p_joint 2.325301e-03

Joint ci ratio: 6.282619e-02	ci left: 2.252666e-03	ci right 2.399368e-03	k: 3883	n:1670000
Cons ci ratio: 2.377582e-03	ci left: 6.187074e-01	ci right 6.201808e-01	k: 1034472	n:1670000
KS ci ratio: 1.227627e-01	ci left: 5.727156e-04	ci right 6.481954e-04	k: 1018	n:1670000
TRIM41   1670000 perm   1546 sec   (1080 perm/sec)   p_kst 6.095808e-04   p_cons 6.194443e-01   p_joint 2.325150e-03

Joint ci ratio: 6.262493e-02	ci left: 2.253905e-03	ci right 2.400200e-03	k: 3908	n:1680000
Cons ci ratio: 2.370515e-03	ci left: 6.187058e-01	ci right 6.201748e-01	k: 1040660	n:1680000
KS ci ratio: 1.225825e-01	ci left: 5.710374e-04	ci right 6.461776e-04	k: 1021	n:1680000
TRIM41   1680000 perm   1562 sec   (1075 perm/sec)   p_kst 6.077381e-04   p_cons 6.194405e-01   p_joint 2.326190e-03

Joint ci ratio: 6.247337e-02	ci left: 2.251635e-03	ci right 2.397416e-03	k: 3927	n:1690000
Cons ci ratio: 2.363436e-03	ci left: 6.187190e-01	ci right 6.201836e-01	k: 1046873	n:1690000
KS ci ratio: 1.220462e-01	ci left: 5.728211e-04	ci right 6.478423e-04	k: 1030	n:1690000
TRIM41   1690000 perm   1580 sec   (1070 perm/sec)   p_kst 6.094675e-04   p_cons 6.194515e-01   p_joint 2.323669e-03

Joint ci ratio: 6.231498e-02	ci left: 2.249971e-03	ci right 2.395262e-03	k: 3947	n:1700000
Cons ci ratio: 2.356429e-03	ci left: 6.187302e-01	ci right 6.201905e-01	k: 1053083	n:1700000
KS ci ratio: 1.215753e-01	ci left: 5.740140e-04	ci right 6.488807e-04	k: 1038	n:1700000
TRIM41   1700000 perm   1596 sec   (1065 perm/sec)   p_kst 6.105882e-04   p_cons 6.194606e-01   p_joint 2.321765e-03

Joint ci ratio: 6.210292e-02	ci left: 2.252358e-03	ci right 2.397289e-03	k: 3974	n:1710000
Cons ci ratio: 2.349501e-03	ci left: 6.187379e-01	ci right 6.201939e-01	k: 1059287	n:1710000
KS ci ratio: 1.212839e-01	ci left: 5.734924e-04	ci right 6.480988e-04	k: 1043	n:1710000
TRIM41   1710000 perm   1616 sec   (1058 perm/sec)   p_kst 6.099415e-04   p_cons 6.194661e-01   p_joint 2.323977e-03

Joint ci ratio: 6.184655e-02	ci left: 2.258151e-03	ci right 2.402835e-03	k: 4007	n:1720000
Cons ci ratio: 2.342507e-03	ci left: 6.187710e-01	ci right 6.202228e-01	k: 1065535	n:1720000
KS ci ratio: 1.207644e-01	ci left: 5.752323e-04	ci right 6.497217e-04	k: 1052	n:1720000
TRIM41   1720000 perm   1633 sec   (1053 perm/sec)   p_kst 6.116279e-04   p_cons 6.194971e-01   p_joint 2.329651e-03

Joint ci ratio: 6.166986e-02	ci left: 2.258188e-03	ci right 2.402446e-03	k: 4030	n:1730000
Cons ci ratio: 2.335667e-03	ci left: 6.187853e-01	ci right 6.202328e-01	k: 1071751	n:1730000
KS ci ratio: 1.204218e-01	ci left: 5.752709e-04	ci right 6.495388e-04	k: 1058	n:1730000
TRIM41   1730000 perm   1654 sec   (1046 perm/sec)   p_kst 6.115607e-04   p_cons 6.195092e-01   p_joint 2.329480e-03

Joint ci ratio: 6.147189e-02	ci left: 2.259922e-03	ci right 2.403811e-03	k: 4056	n:1740000
Cons ci ratio: 2.328815e-03	ci left: 6.188138e-01	ci right 6.202571e-01	k: 1077992	n:1740000
KS ci ratio: 1.203084e-01	ci left: 5.730795e-04	ci right 6.469899e-04	k: 1060	n:1740000
TRIM41   1740000 perm   1672 sec   (1041 perm/sec)   p_kst 6.091954e-04   p_cons 6.195356e-01   p_joint 2.331034e-03

Joint ci ratio: 6.130591e-02	ci left: 2.259387e-03	ci right 2.402839e-03	k: 4078	n:1750000
Cons ci ratio: 2.322392e-03	ci left: 6.187670e-01	ci right 6.202063e-01	k: 1084102	n:1750000
KS ci ratio: 1.198573e-01	ci left: 5.742389e-04	ci right 6.480015e-04	k: 1068	n:1750000
TRIM41   1750000 perm   1690 sec   (1035 perm/sec)   p_kst 6.102857e-04   p_cons 6.194869e-01   p_joint 2.330286e-03

Joint ci ratio: 6.111887e-02	ci left: 2.260537e-03	ci right 2.403609e-03	k: 4103	n:1760000
Cons ci ratio: 2.315975e-03	ci left: 6.187305e-01	ci right 6.201657e-01	k: 1090229	n:1760000
KS ci ratio: 1.196896e-01	ci left: 5.726296e-04	ci right 6.460753e-04	k: 1071	n:1760000
TRIM41   1760000 perm   1711 sec   (1029 perm/sec)   p_kst 6.085227e-04   p_cons 6.194483e-01   p_joint 2.331250e-03

Joint ci ratio: 6.093353e-02	ci left: 2.261674e-03	ci right 2.404369e-03	k: 4128	n:1770000
Cons ci ratio: 2.309363e-03	ci left: 6.187447e-01	ci right 6.201758e-01	k: 1096445	n:1770000
KS ci ratio: 1.191902e-01	ci left: 5.743273e-04	ci right 6.476617e-04	k: 1080	n:1770000
TRIM41   1770000 perm   1728 sec   (1024 perm/sec)   p_kst 6.101695e-04   p_cons 6.194605e-01   p_joint 2.332203e-03

Joint ci ratio: 6.072057e-02	ci left: 2.265013e-03	ci right 2.407401e-03	k: 4157	n:1780000
Cons ci ratio: 2.302929e-03	ci left: 6.187340e-01	ci right 6.201611e-01	k: 1102617	n:1780000
KS ci ratio: 1.189155e-01	ci left: 5.738260e-04	ci right 6.469157e-04	k: 1085	n:1780000
TRIM41   1780000 perm   1747 sec   (1019 perm/sec)   p_kst 6.095506e-04   p_cons 6.194478e-01   p_joint 2.335393e-03

Joint ci ratio: 6.055333e-02	ci left: 2.265013e-03	ci right 2.406996e-03	k: 4180	n:1790000
Cons ci ratio: 2.296611e-03	ci left: 6.187106e-01	ci right 6.201337e-01	k: 1108766	n:1790000
KS ci ratio: 1.185341e-01	ci left: 5.744148e-04	ci right 6.473284e-04	k: 1092	n:1790000
TRIM41   1790000 perm   1767 sec   (1013 perm/sec)   p_kst 6.100559e-04   p_cons 6.194223e-01   p_joint 2.335196e-03

Joint ci ratio: 6.040908e-02	ci left: 2.263373e-03	ci right 2.404903e-03	k: 4200	n:1800000
Cons ci ratio: 2.290124e-03	ci left: 6.187330e-01	ci right 6.201522e-01	k: 1114997	n:1800000
KS ci ratio: 1.179954e-01	ci left: 5.766149e-04	ci right 6.494519e-04	k: 1102	n:1800000
TRIM41   1800000 perm   1787 sec   (1007 perm/sec)   p_kst 6.122222e-04   p_cons 6.194428e-01   p_joint 2.333333e-03

Joint ci ratio: 6.023725e-02	ci left: 2.263928e-03	ci right 2.405075e-03	k: 4224	n:1810000
Cons ci ratio: 2.283897e-03	ci left: 6.187126e-01	ci right 6.201279e-01	k: 1121151	n:1810000
KS ci ratio: 1.177821e-01	ci left: 5.755739e-04	ci right 6.481388e-04	k: 1106	n:1810000
TRIM41   1810000 perm   1804 sec   (1003 perm/sec)   p_kst 6.110497e-04   p_cons 6.194204e-01   p_joint 2.333702e-03

Joint ci ratio: 6.007396e-02	ci left: 2.263936e-03	ci right 2.404688e-03	k: 4247	n:1820000
Cons ci ratio: 2.277410e-03	ci left: 6.187568e-01	ci right 6.201681e-01	k: 1127422	n:1820000
KS ci ratio: 1.173061e-01	ci left: 5.772111e-04	ci right 6.496680e-04	k: 1115	n:1820000
TRIM41   1820000 perm   1824 sec   (998 perm/sec)   p_kst 6.126374e-04   p_cons 6.194626e-01   p_joint 2.333516e-03

Joint ci ratio: 5.986284e-02	ci left: 2.267712e-03	ci right 2.408187e-03	k: 4277	n:1830000
Cons ci ratio: 2.270962e-03	ci left: 6.188038e-01	ci right 6.202112e-01	k: 1133699	n:1830000
KS ci ratio: 1.168879e-01	ci left: 5.783005e-04	ci right 6.506174e-04	k: 1123	n:1830000
TRIM41   1830000 perm   1842 sec   (994 perm/sec)   p_kst 6.136612e-04   p_cons 6.195077e-01   p_joint 2.337158e-03

Joint ci ratio: 5.964700e-02	ci left: 2.271984e-03	ci right 2.412198e-03	k: 4308	n:1840000
Cons ci ratio: 2.264919e-03	ci left: 6.187774e-01	ci right 6.201810e-01	k: 1139842	n:1840000
KS ci ratio: 1.163712e-01	ci left: 5.804338e-04	ci right 6.526747e-04	k: 1133	n:1840000
TRIM41   1840000 perm   1861 sec   (989 perm/sec)   p_kst 6.157609e-04   p_cons 6.194793e-01   p_joint 2.341304e-03

Joint ci ratio: 5.944720e-02	ci left: 2.275146e-03	ci right 2.415068e-03	k: 4337	n:1850000
Cons ci ratio: 2.258752e-03	ci left: 6.187869e-01	ci right 6.201867e-01	k: 1146051	n:1850000
KS ci ratio: 1.158107e-01	ci left: 5.830697e-04	ci right 6.552652e-04	k: 1144	n:1850000
TRIM41   1850000 perm   1878 sec   (985 perm/sec)   p_kst 6.183784e-04   p_cons 6.194870e-01   p_joint 2.344324e-03

Joint ci ratio: 5.926981e-02	ci left: 2.276685e-03	ci right 2.416270e-03	k: 4363	n:1860000
Cons ci ratio: 2.252597e-03	ci left: 6.188045e-01	ci right 6.202005e-01	k: 1152275	n:1860000
KS ci ratio: 1.156090e-01	ci left: 5.820232e-04	ci right 6.539550e-04	k: 1148	n:1860000
TRIM41   1860000 perm   1899 sec   (980 perm/sec)   p_kst 6.172043e-04   p_cons 6.195027e-01   p_joint 2.345699e-03

Joint ci ratio: 5.911424e-02	ci left: 2.276627e-03	ci right 2.415830e-03	k: 4386	n:1870000
Cons ci ratio: 2.246615e-03	ci left: 6.187962e-01	ci right 6.201885e-01	k: 1158451	n:1870000
KS ci ratio: 1.151588e-01	ci left: 5.835847e-04	ci right 6.554096e-04	k: 1157	n:1870000
TRIM41   1870000 perm   1917 sec   (975 perm/sec)   p_kst 6.187166e-04   p_cons 6.194925e-01   p_joint 2.345455e-03

Joint ci ratio: 5.897330e-02	ci left: 2.275523e-03	ci right 2.414315e-03	k: 4407	n:1880000
Cons ci ratio: 2.240806e-03	ci left: 6.187614e-01	ci right 6.201500e-01	k: 1164577	n:1880000
KS ci ratio: 1.148616e-01	ci left: 5.835802e-04	ci right 6.552066e-04	k: 1163	n:1880000
TRIM41   1880000 perm   1936 sec   (971 perm/sec)   p_kst 6.186170e-04   p_cons 6.194559e-01   p_joint 2.344149e-03

Joint ci ratio: 5.881340e-02	ci left: 2.275994e-03	ci right 2.414426e-03	k: 4431	n:1890000
Cons ci ratio: 2.235012e-03	ci left: 6.187333e-01	ci right 6.201182e-01	k: 1170715	n:1890000
KS ci ratio: 1.145667e-01	ci left: 5.835760e-04	ci right 6.550056e-04	k: 1169	n:1890000
TRIM41   1890000 perm   1958 sec   (965 perm/sec)   p_kst 6.185185e-04   p_cons 6.194259e-01   p_joint 2.344444e-03

Joint ci ratio: 5.866799e-02	ci left: 2.275424e-03	ci right 2.413468e-03	k: 4453	n:1900000
Cons ci ratio: 2.229081e-03	ci left: 6.187439e-01	ci right 6.201252e-01	k: 1176926	n:1900000
KS ci ratio: 1.143715e-01	ci left: 5.825495e-04	ci right 6.537237e-04	k: 1173	n:1900000
TRIM41   1900000 perm   1979 sec   (960 perm/sec)   p_kst 6.173684e-04   p_cons 6.194347e-01   p_joint 2.343684e-03

Joint ci ratio: 5.854988e-02	ci left: 2.272797e-03	ci right 2.410394e-03	k: 4471	n:1910000
Cons ci ratio: 2.223051e-03	ci left: 6.187854e-01	ci right 6.201630e-01	k: 1183196	n:1910000
KS ci ratio: 1.140320e-01	ci left: 5.830598e-04	ci right 6.540706e-04	k: 1180	n:1910000
TRIM41   1910000 perm   2003 sec   (954 perm/sec)   p_kst 6.178010e-04   p_cons 6.194743e-01   p_joint 2.340838e-03

Joint ci ratio: 5.840642e-02	ci left: 2.272250e-03	ci right 2.409466e-03	k: 4493	n:1920000
Cons ci ratio: 2.217327e-03	ci left: 6.187717e-01	ci right 6.201457e-01	k: 1189361	n:1920000
KS ci ratio: 1.139357e-01	ci left: 5.810349e-04	ci right 6.517354e-04	k: 1182	n:1920000
TRIM41   1920000 perm   2024 sec   (949 perm/sec)   p_kst 6.156250e-04   p_cons 6.194589e-01   p_joint 2.340104e-03

Joint ci ratio: 5.822524e-02	ci left: 2.274773e-03	ci right 2.411701e-03	k: 4521	n:1930000
Cons ci ratio: 2.211574e-03	ci left: 6.187737e-01	ci right 6.201441e-01	k: 1195556	n:1930000
KS ci ratio: 1.136478e-01	ci left: 5.810447e-04	ci right 6.515558e-04	k: 1188	n:1930000
TRIM41   1930000 perm   2043 sec   (945 perm/sec)   p_kst 6.155440e-04   p_cons 6.194591e-01   p_joint 2.342487e-03

Joint ci ratio: 5.813546e-02	ci left: 2.270159e-03	ci right 2.406591e-03	k: 4535	n:1940000
Cons ci ratio: 2.205794e-03	ci left: 6.187911e-01	ci right 6.201580e-01	k: 1201781	n:1940000
KS ci ratio: 1.133148e-01	ci left: 5.815555e-04	ci right 6.519079e-04	k: 1195	n:1940000
TRIM41   1940000 perm   2064 sec   (940 perm/sec)   p_kst 6.159794e-04   p_cons 6.194747e-01   p_joint 2.337629e-03

Joint ci ratio: 5.798864e-02	ci left: 2.270141e-03	ci right 2.406216e-03	k: 4558	n:1950000
Cons ci ratio: 2.199989e-03	ci left: 6.188233e-01	ci right 6.201866e-01	k: 1208035	n:1950000
KS ci ratio: 1.130316e-01	ci left: 5.815630e-04	ci right 6.517287e-04	k: 1201	n:1950000
TRIM41   1950000 perm   2084 sec   (936 perm/sec)   p_kst 6.158974e-04   p_cons 6.195051e-01   p_joint 2.337436e-03

Joint ci ratio: 5.786824e-02	ci left: 2.268112e-03	ci right 2.403773e-03	k: 4577	n:1960000
Cons ci ratio: 2.194410e-03	ci left: 6.188163e-01	ci right 6.201762e-01	k: 1214213	n:1960000
KS ci ratio: 1.124714e-01	ci left: 5.845457e-04	ci right 6.546986e-04	k: 1213	n:1960000
TRIM41   1960000 perm   2107 sec   (930 perm/sec)   p_kst 6.188776e-04   p_cons 6.194964e-01   p_joint 2.335204e-03

Joint ci ratio: 5.769201e-02	ci left: 2.270607e-03	ci right 2.405990e-03	k: 4605	n:1970000
Cons ci ratio: 2.188836e-03	ci left: 6.188175e-01	ci right 6.201740e-01	k: 1220407	n:1970000
KS ci ratio: 1.121945e-01	ci left: 5.845385e-04	ci right 6.545065e-04	k: 1219	n:1970000
TRIM41   1970000 perm   2126 sec   (927 perm/sec)   p_kst 6.187817e-04   p_cons 6.194959e-01   p_joint 2.337563e-03

Joint ci ratio: 5.752361e-02	ci left: 2.272579e-03	ci right 2.407671e-03	k: 4632	n:1980000
Cons ci ratio: 2.183187e-03	ci left: 6.188440e-01	ci right 6.201970e-01	k: 1226651	n:1980000
KS ci ratio: 1.117829e-01	ci left: 5.860045e-04	ci right 6.558736e-04	k: 1228	n:1980000
TRIM41   1980000 perm   2148 sec   (922 perm/sec)   p_kst 6.202020e-04   p_cons 6.195207e-01   p_joint 2.339394e-03

Joint ci ratio: 5.739371e-02	ci left: 2.271560e-03	ci right 2.406277e-03	k: 4653	n:1990000
Cons ci ratio: 2.177558e-03	ci left: 6.188753e-01	ci right 6.202249e-01	k: 1232905	n:1990000
KS ci ratio: 1.116468e-01	ci left: 5.845251e-04	ci right 6.541274e-04	k: 1231	n:1990000
TRIM41   1990000 perm   2171 sec   (917 perm/sec)   p_kst 6.185930e-04   p_cons 6.195503e-01   p_joint 2.338191e-03

Joint ci ratio: 5.724629e-02	ci left: 2.272030e-03	ci right 2.406417e-03	k: 4677	n:2000000
Cons ci ratio: 2.172111e-03	ci left: 6.188762e-01	ci right 6.202224e-01	k: 1239099	n:2000000
KS ci ratio: 1.114660e-01	ci left: 5.835467e-04	ci right 6.529126e-04	k: 1235	n:2000000
TRIM41   2000000 perm   2191 sec   (913 perm/sec)   p_kst 6.175000e-04   p_cons 6.195495e-01   p_joint 2.338500e-03

Joint ci ratio: 5.713045e-02	ci left: 2.270044e-03	ci right 2.404033e-03	k: 4696	n:2010000
Cons ci ratio: 2.166750e-03	ci left: 6.188672e-01	ci right 6.202101e-01	k: 1245273	n:2010000
KS ci ratio: 1.113311e-01	ci left: 5.820944e-04	ci right 6.511984e-04	k: 1238	n:2010000
TRIM41   2010000 perm   2212 sec   (909 perm/sec)   p_kst 6.159204e-04   p_cons 6.195388e-01   p_joint 2.336318e-03

Joint ci ratio: 5.697899e-02	ci left: 2.271006e-03	ci right 2.404685e-03	k: 4721	n:2020000
Cons ci ratio: 2.161492e-03	ci left: 6.188444e-01	ci right 6.201840e-01	k: 1251419	n:2020000
KS ci ratio: 1.111071e-01	ci left: 5.816191e-04	ci right 6.505187e-04	k: 1243	n:2020000
TRIM41   2020000 perm   2234 sec   (904 perm/sec)   p_kst 6.153465e-04   p_cons 6.195144e-01   p_joint 2.337129e-03

Joint ci ratio: 5.690087e-02	ci left: 2.266131e-03	ci right 2.399334e-03	k: 4734	n:2030000
Cons ci ratio: 2.156018e-03	ci left: 6.188775e-01	ci right 6.202138e-01	k: 1257678	n:2030000
KS ci ratio: 1.108846e-01	ci left: 5.811487e-04	ci right 6.498456e-04	k: 1248	n:2030000
TRIM41   2030000 perm   2256 sec   (900 perm/sec)   p_kst 6.147783e-04   p_cons 6.195458e-01   p_joint 2.332020e-03

Joint ci ratio: 5.678711e-02	ci left: 2.264204e-03	ci right 2.397019e-03	k: 4753	n:2040000
Cons ci ratio: 2.150661e-03	ci left: 6.188937e-01	ci right 6.202266e-01	k: 1263903	n:2040000
KS ci ratio: 1.106633e-01	ci left: 5.806830e-04	ci right 6.491789e-04	k: 1253	n:2040000
TRIM41   2040000 perm   2281 sec   (894 perm/sec)   p_kst 6.142157e-04   p_cons 6.195603e-01   p_joint 2.329902e-03

Joint ci ratio: 5.665618e-02	ci left: 2.263739e-03	ci right 2.396210e-03	k: 4775	n:2050000
Cons ci ratio: 2.145523e-03	ci left: 6.188701e-01	ci right 6.201998e-01	k: 1270047	n:2050000
KS ci ratio: 1.104434e-01	ci left: 5.802219e-04	ci right 6.485187e-04	k: 1258	n:2050000
TRIM41   2050000 perm   2301 sec   (891 perm/sec)   p_kst 6.136585e-04   p_cons 6.195351e-01   p_joint 2.329268e-03

Joint ci ratio: 5.649666e-02	ci left: 2.265671e-03	ci right 2.397870e-03	k: 4802	n:2060000
Cons ci ratio: 2.140359e-03	ci left: 6.188609e-01	ci right 6.201873e-01	k: 1276220	n:2060000
KS ci ratio: 1.099639e-01	ci left: 5.825980e-04	ci right 6.508574e-04	k: 1269	n:2060000
TRIM41   2060000 perm   2322 sec   (887 perm/sec)   p_kst 6.160194e-04   p_cons 6.195243e-01   p_joint 2.331068e-03

Joint ci ratio: 5.636773e-02	ci left: 2.265204e-03	ci right 2.397064e-03	k: 4824	n:2070000
Cons ci ratio: 2.135459e-03	ci left: 6.188015e-01	ci right 6.201248e-01	k: 1282289	n:2070000
KS ci ratio: 1.098343e-01	ci left: 5.811929e-04	ci right 6.492023e-04	k: 1272	n:2070000
TRIM41   2070000 perm   2345 sec   (883 perm/sec)   p_kst 6.144928e-04   p_cons 6.194633e-01   p_joint 2.330435e-03

Joint ci ratio: 5.621643e-02	ci left: 2.266638e-03	ci right 2.398216e-03	k: 4850	n:2080000
Cons ci ratio: 2.130371e-03	ci left: 6.187917e-01	ci right 6.201118e-01	k: 1288460	n:2080000
KS ci ratio: 1.095764e-01	ci left: 5.812042e-04	ci right 6.490449e-04	k: 1278	n:2080000
TRIM41   2080000 perm   2365 sec   (879 perm/sec)   p_kst 6.144231e-04   p_cons 6.194519e-01   p_joint 2.331731e-03

Joint ci ratio: 5.606635e-02	ci left: 2.268058e-03	ci right 2.399356e-03	k: 4876	n:2090000
Cons ci ratio: 2.125114e-03	ci left: 6.188275e-01	ci right 6.201444e-01	k: 1294726	n:2090000
KS ci ratio: 1.092778e-01	ci left: 5.816809e-04	ci right 6.493803e-04	k: 1285	n:2090000
TRIM41   2090000 perm   2384 sec   (877 perm/sec)   p_kst 6.148325e-04   p_cons 6.194861e-01   p_joint 2.333014e-03

Joint ci ratio: 5.592318e-02	ci left: 2.268996e-03	ci right 2.400001e-03	k: 4901	n:2100000
Cons ci ratio: 2.120105e-03	ci left: 6.188163e-01	ci right 6.201301e-01	k: 1300894	n:2100000
KS ci ratio: 1.089815e-01	ci left: 5.821534e-04	ci right 6.497123e-04	k: 1292	n:2100000
TRIM41   2100000 perm   2405 sec   (873 perm/sec)   p_kst 6.152381e-04   p_cons 6.194733e-01   p_joint 2.333810e-03

Joint ci ratio: 5.575275e-02	ci left: 2.272262e-03	ci right 2.403043e-03	k: 4931	n:2110000
Cons ci ratio: 2.115013e-03	ci left: 6.188317e-01	ci right 6.201424e-01	k: 1307118	n:2110000
KS ci ratio: 1.084376e-01	ci left: 5.853880e-04	ci right 6.529616e-04	k: 1305	n:2110000
TRIM41   2110000 perm   2427 sec   (870 perm/sec)   p_kst 6.184834e-04   p_cons 6.194872e-01   p_joint 2.336967e-03

Joint ci ratio: 5.559510e-02	ci left: 2.274568e-03	ci right 2.405100e-03	k: 4959	n:2120000
Cons ci ratio: 2.110034e-03	ci left: 6.188300e-01	ci right 6.201376e-01	k: 1313306	n:2120000
KS ci ratio: 1.078200e-01	ci left: 5.895110e-04	ci right 6.571483e-04	k: 1320	n:2120000
TRIM41   2120000 perm   2448 sec   (866 perm/sec)   p_kst 6.226415e-04   p_cons 6.194840e-01   p_joint 2.339151e-03

Joint ci ratio: 5.546107e-02	ci left: 2.275000e-03	ci right 2.405232e-03	k: 4983	n:2130000
Cons ci ratio: 2.105276e-03	ci left: 6.187865e-01	ci right 6.200911e-01	k: 1319405	n:2130000
KS ci ratio: 1.074141e-01	ci left: 5.913118e-04	ci right 6.588842e-04	k: 1330	n:2130000
TRIM41   2130000 perm   2469 sec   (863 perm/sec)   p_kst 6.244131e-04   p_cons 6.194390e-01   p_joint 2.339437e-03

Joint ci ratio: 5.535571e-02	ci left: 2.273125e-03	ci right 2.402994e-03	k: 5002	n:2140000
Cons ci ratio: 2.100387e-03	ci left: 6.187799e-01	ci right 6.200814e-01	k: 1325582	n:2140000
KS ci ratio: 1.072129e-01	ci left: 5.908224e-04	ci right 6.582044e-04	k: 1335	n:2140000
TRIM41   2140000 perm   2490 sec   (859 perm/sec)   p_kst 6.238318e-04   p_cons 6.194308e-01   p_joint 2.337383e-03

Joint ci ratio: 5.521240e-02	ci left: 2.274478e-03	ci right 2.404078e-03	k: 5028	n:2150000
Cons ci ratio: 2.095398e-03	ci left: 6.188036e-01	ci right 6.201021e-01	k: 1331824	n:2150000
KS ci ratio: 1.070528e-01	ci left: 5.898850e-04	ci right 6.570533e-04	k: 1339	n:2150000
TRIM41   2150000 perm   2517 sec   (854 perm/sec)   p_kst 6.227907e-04   p_cons 6.194530e-01   p_joint 2.338605e-03

Joint ci ratio: 5.507019e-02	ci left: 2.275819e-03	ci right 2.405151e-03	k: 5054	n:2160000
Cons ci ratio: 2.090773e-03	ci left: 6.187530e-01	ci right 6.200485e-01	k: 1337906	n:2160000
KS ci ratio: 1.067743e-01	ci left: 5.903081e-04	ci right 6.573388e-04	k: 1346	n:2160000
TRIM41   2160000 perm   2537 sec   (851 perm/sec)   p_kst 6.231481e-04   p_cons 6.194009e-01   p_joint 2.339815e-03

Joint ci ratio: 5.492908e-02	ci left: 2.277148e-03	ci right 2.406213e-03	k: 5080	n:2170000
Cons ci ratio: 2.085761e-03	ci left: 6.187974e-01	ci right 6.200898e-01	k: 1344193	n:2170000
KS ci ratio: 1.065767e-01	ci left: 5.898305e-04	ci right 6.566752e-04	k: 1351	n:2170000
TRIM41   2170000 perm   2558 sec   (848 perm/sec)   p_kst 6.225806e-04   p_cons 6.194438e-01   p_joint 2.341014e-03

Joint ci ratio: 5.476755e-02	ci left: 2.280275e-03	ci right 2.409126e-03	k: 5110	n:2180000
Cons ci ratio: 2.081122e-03	ci left: 6.187647e-01	ci right 6.200542e-01	k: 1350313	n:2180000
KS ci ratio: 1.061846e-01	ci left: 5.915900e-04	ci right 6.583720e-04	k: 1361	n:2180000
TRIM41   2180000 perm   2580 sec   (845 perm/sec)   p_kst 6.243119e-04   p_cons 6.194096e-01   p_joint 2.344037e-03

Joint ci ratio: 5.467143e-02	ci left: 2.277970e-03	ci right 2.406457e-03	k: 5128	n:2190000
Cons ci ratio: 2.076468e-03	ci left: 6.187429e-01	ci right 6.200294e-01	k: 1356456	n:2190000
KS ci ratio: 1.059903e-01	ci left: 5.911112e-04	ci right 6.577094e-04	k: 1366	n:2190000
TRIM41   2190000 perm   2602 sec   (842 perm/sec)   p_kst 6.237443e-04   p_cons 6.193863e-01   p_joint 2.341553e-03

Joint ci ratio: 5.451746e-02	ci left: 2.280617e-03	ci right 2.408880e-03	k: 5157	n:2200000
Cons ci ratio: 2.071811e-03	ci left: 6.187289e-01	ci right 6.200126e-01	k: 1362616	n:2200000
KS ci ratio: 1.057585e-01	ci left: 5.910793e-04	ci right 6.575193e-04	k: 1372	n:2200000
TRIM41   2200000 perm   2624 sec   (839 perm/sec)   p_kst 6.236364e-04   p_cons 6.193709e-01   p_joint 2.344091e-03

Joint ci ratio: 5.439106e-02	ci left: 2.281010e-03	ci right 2.408988e-03	k: 5181	n:2210000
Cons ci ratio: 2.067042e-03	ci left: 6.187477e-01	ci right 6.200284e-01	k: 1368848	n:2210000
KS ci ratio: 1.056432e-01	ci left: 5.897263e-04	ci right 6.559375e-04	k: 1375	n:2210000
TRIM41   2210000 perm   2646 sec   (835 perm/sec)   p_kst 6.221719e-04   p_cons 6.193882e-01   p_joint 2.344344e-03

Joint ci ratio: 5.430737e-02	ci left: 2.277844e-03	ci right 2.405442e-03	k: 5197	n:2220000
Cons ci ratio: 2.062462e-03	ci left: 6.187307e-01	ci right 6.200086e-01	k: 1375001	n:2220000
KS ci ratio: 1.055283e-01	ci left: 5.883855e-04	ci right 6.543698e-04	k: 1378	n:2220000
TRIM41   2220000 perm   2666 sec   (833 perm/sec)   p_kst 6.207207e-04   p_cons 6.193698e-01   p_joint 2.340991e-03

Joint ci ratio: 5.417723e-02	ci left: 2.278688e-03	ci right 2.406018e-03	k: 5222	n:2230000
Cons ci ratio: 2.057865e-03	ci left: 6.187247e-01	ci right 6.199997e-01	k: 1381178	n:2230000
KS ci ratio: 1.051855e-01	ci left: 5.896766e-04	ci right 6.555776e-04	k: 1387	n:2230000
TRIM41   2230000 perm   2688 sec   (830 perm/sec)   p_kst 6.219731e-04   p_cons 6.193623e-01   p_joint 2.341704e-03

Joint ci ratio: 5.404801e-02	ci left: 2.279525e-03	ci right 2.406588e-03	k: 5247	n:2240000
Cons ci ratio: 2.053210e-03	ci left: 6.187392e-01	ci right 6.200114e-01	k: 1387401	n:2240000
KS ci ratio: 1.049966e-01	ci left: 5.892176e-04	ci right 6.549417e-04	k: 1392	n:2240000
TRIM41   2240000 perm   2709 sec   (827 perm/sec)   p_kst 6.214286e-04   p_cons 6.193754e-01   p_joint 2.342411e-03

Joint ci ratio: 5.389923e-02	ci left: 2.282109e-03	ci right 2.408955e-03	k: 5276	n:2250000
Cons ci ratio: 2.048682e-03	ci left: 6.187314e-01	ci right 6.200007e-01	k: 1393574	n:2250000
KS ci ratio: 1.049591e-01	ci left: 5.870316e-04	ci right 6.524870e-04	k: 1393	n:2250000
TRIM41   2250000 perm   2732 sec   (824 perm/sec)   p_kst 6.191111e-04   p_cons 6.193662e-01   p_joint 2.344889e-03

Joint ci ratio: 5.380251e-02	ci left: 2.280305e-03	ci right 2.406816e-03	k: 5295	n:2260000
Cons ci ratio: 2.044088e-03	ci left: 6.187458e-01	ci right 6.200123e-01	k: 1399797	n:2260000
KS ci ratio: 1.046965e-01	ci left: 5.874502e-04	ci right 6.527784e-04	k: 1400	n:2260000
TRIM41   2260000 perm   2755 sec   (820 perm/sec)   p_kst 6.194690e-04   p_cons 6.193792e-01   p_joint 2.342920e-03

Joint ci ratio: 5.367595e-02	ci left: 2.281125e-03	ci right 2.407375e-03	k: 5320	n:2270000
Cons ci ratio: 2.039573e-03	ci left: 6.187491e-01	ci right 6.200127e-01	k: 1405995	n:2270000
KS ci ratio: 1.044731e-01	ci left: 5.874364e-04	ci right 6.526150e-04	k: 1406	n:2270000
TRIM41   2270000 perm   2776 sec   (818 perm/sec)   p_kst 6.193833e-04   p_cons 6.193811e-01   p_joint 2.343612e-03

Joint ci ratio: 5.355028e-02	ci left: 2.281938e-03	ci right 2.407928e-03	k: 5345	n:2280000
Cons ci ratio: 2.035223e-03	ci left: 6.187207e-01	ci right 6.199816e-01	k: 1412121	n:2280000
KS ci ratio: 1.041773e-01	ci left: 5.882771e-04	ci right 6.533530e-04	k: 1414	n:2280000
TRIM41   2280000 perm   2806 sec   (813 perm/sec)   p_kst 6.201754e-04   p_cons 6.193513e-01   p_joint 2.344298e-03

Joint ci ratio: 5.346541e-02	ci left: 2.279297e-03	ci right 2.404936e-03	k: 5362	n:2290000
Cons ci ratio: 2.030749e-03	ci left: 6.187280e-01	ci right 6.199861e-01	k: 1418328	n:2290000
KS ci ratio: 1.039571e-01	ci left: 5.882601e-04	ci right 6.531882e-04	k: 1420	n:2290000
TRIM41   2290000 perm   2827 sec   (810 perm/sec)   p_kst 6.200873e-04   p_cons 6.193572e-01   p_joint 2.341485e-03

Joint ci ratio: 5.334618e-02	ci left: 2.279683e-03	ci right 2.405054e-03	k: 5386	n:2300000
Cons ci ratio: 2.026213e-03	ci left: 6.187565e-01	ci right 6.200119e-01	k: 1424584	n:2300000
KS ci ratio: 1.036657e-01	ci left: 5.890905e-04	ci right 6.539167e-04	k: 1428	n:2300000
TRIM41   2300000 perm   2850 sec   (807 perm/sec)   p_kst 6.208696e-04   p_cons 6.193843e-01   p_joint 2.341739e-03

Joint ci ratio: 5.326228e-02	ci left: 2.277075e-03	ci right 2.402100e-03	k: 5403	n:2310000
Cons ci ratio: 2.021797e-03	ci left: 6.187640e-01	ci right 6.200167e-01	k: 1430792	n:2310000
KS ci ratio: 1.034848e-01	ci left: 5.886487e-04	ci right 6.533065e-04	k: 1433	n:2310000
TRIM41   2310000 perm   2870 sec   (805 perm/sec)   p_kst 6.203463e-04   p_cons 6.193905e-01   p_joint 2.338961e-03

Joint ci ratio: 5.313948e-02	ci left: 2.277893e-03	ci right 2.402665e-03	k: 5428	n:2320000
Cons ci ratio: 2.017412e-03	ci left: 6.187705e-01	ci right 6.200205e-01	k: 1436998	n:2320000
KS ci ratio: 1.030544e-01	ci left: 5.911503e-04	ci right 6.557964e-04	k: 1445	n:2320000
TRIM41   2320000 perm   2892 sec   (802 perm/sec)   p_kst 6.228448e-04   p_cons 6.193957e-01   p_joint 2.339655e-03

Joint ci ratio: 5.303216e-02	ci left: 2.277433e-03	ci right 2.401920e-03	k: 5450	n:2330000
Cons ci ratio: 2.013164e-03	ci left: 6.187517e-01	ci right 6.199990e-01	k: 1443145	n:2330000
KS ci ratio: 1.027351e-01	ci left: 5.923764e-04	ci right 6.569439e-04	k: 1454	n:2330000
TRIM41   2330000 perm   2914 sec   (800 perm/sec)   p_kst 6.240343e-04   p_cons 6.193755e-01   p_joint 2.339056e-03

Joint ci ratio: 5.289158e-02	ci left: 2.279930e-03	ci right 2.404213e-03	k: 5479	n:2340000
Cons ci ratio: 2.008843e-03	ci left: 6.187566e-01	ci right 6.200012e-01	k: 1449347	n:2340000
KS ci ratio: 1.025591e-01	ci left: 5.919268e-04	ci right 6.563280e-04	k: 1459	n:2340000
TRIM41   2340000 perm   2938 sec   (796 perm/sec)   p_kst 6.235043e-04   p_cons 6.193791e-01   p_joint 2.341453e-03

Joint ci ratio: 5.276653e-02	ci left: 2.281146e-03	ci right 2.405192e-03	k: 5505	n:2350000
Cons ci ratio: 2.004544e-03	ci left: 6.187627e-01	ci right 6.200047e-01	k: 1455552	n:2350000
KS ci ratio: 1.024539e-01	ci left: 5.906518e-04	ci right 6.548444e-04	k: 1462	n:2350000
TRIM41   2350000 perm   2960 sec   (794 perm/sec)   p_kst 6.221277e-04   p_cons 6.193838e-01   p_joint 2.342553e-03

Joint ci ratio: 5.262329e-02	ci left: 2.284024e-03	ci right 2.407880e-03	k: 5535	n:2360000
Cons ci ratio: 2.000181e-03	ci left: 6.187904e-01	ci right 6.200297e-01	k: 1461808	n:2360000
KS ci ratio: 1.022097e-01	ci left: 5.910392e-04	ci right 6.551117e-04	k: 1469	n:2360000
TRIM41   2360000 perm   2982 sec   (791 perm/sec)   p_kst 6.224576e-04   p_cons 6.194102e-01   p_joint 2.345339e-03

Joint ci ratio: 5.251905e-02	ci left: 2.283548e-03	ci right 2.407125e-03	k: 5557	n:2370000
Cons ci ratio: 1.996025e-03	ci left: 6.187756e-01	ci right 6.200123e-01	k: 1467964	n:2370000
KS ci ratio: 1.019326e-01	ci left: 5.918348e-04	ci right 6.558091e-04	k: 1477	n:2370000
TRIM41   2370000 perm   3003 sec   (789 perm/sec)   p_kst 6.232068e-04   p_cons 6.193941e-01   p_joint 2.344726e-03

Joint ci ratio: 5.237781e-02	ci left: 2.286393e-03	ci right 2.409781e-03	k: 5587	n:2380000
Cons ci ratio: 1.991831e-03	ci left: 6.187761e-01	ci right 6.200102e-01	k: 1474156	n:2380000
KS ci ratio: 1.017607e-01	ci left: 5.913954e-04	ci right 6.552080e-04	k: 1482	n:2380000
TRIM41   2380000 perm   3024 sec   (787 perm/sec)   p_kst 6.226891e-04   p_cons 6.193933e-01   p_joint 2.347479e-03

Joint ci ratio: 5.222839e-02	ci left: 2.290040e-03	ci right 2.413262e-03	k: 5619	n:2390000
Cons ci ratio: 1.987694e-03	ci left: 6.187690e-01	ci right 6.200006e-01	k: 1480330	n:2390000
KS ci ratio: 1.015555e-01	ci left: 5.913676e-04	ci right 6.550408e-04	k: 1488	n:2390000
TRIM41   2390000 perm   3048 sec   (784 perm/sec)   p_kst 6.225941e-04   p_cons 6.193849e-01   p_joint 2.351046e-03

Joint ci ratio: 5.213574e-02	ci left: 2.288723e-03	ci right 2.411649e-03	k: 5639	n:2400000
Cons ci ratio: 1.983552e-03	ci left: 6.187695e-01	ci right 6.199985e-01	k: 1486522	n:2400000
KS ci ratio: 1.015215e-01	ci left: 5.893096e-04	ci right 6.527387e-04	k: 1489	n:2400000
TRIM41   2400000 perm   3070 sec   (782 perm/sec)   p_kst 6.204167e-04   p_cons 6.193842e-01   p_joint 2.349583e-03

Joint ci ratio: 5.201595e-02	ci left: 2.289874e-03	ci right 2.412571e-03	k: 5665	n:2410000
Cons ci ratio: 1.979490e-03	ci left: 6.187572e-01	ci right 6.199836e-01	k: 1492683	n:2410000
KS ci ratio: 1.012838e-01	ci left: 5.896952e-04	ci right 6.530085e-04	k: 1496	n:2410000
TRIM41   2410000 perm   3092 sec   (779 perm/sec)   p_kst 6.207469e-04   p_cons 6.193705e-01   p_joint 2.350622e-03

Joint ci ratio: 5.191985e-02	ci left: 2.288977e-03	ci right 2.411392e-03	k: 5686	n:2420000
Cons ci ratio: 1.975394e-03	ci left: 6.187590e-01	ci right 6.199829e-01	k: 1498878	n:2420000
KS ci ratio: 1.011826e-01	ci left: 5.884667e-04	ci right 6.515811e-04	k: 1499	n:2420000
TRIM41   2420000 perm   3115 sec   (777 perm/sec)   p_kst 6.194215e-04   p_cons 6.193711e-01   p_joint 2.349587e-03

Joint ci ratio: 5.183794e-02	ci left: 2.286869e-03	ci right 2.408972e-03	k: 5704	n:2430000
Cons ci ratio: 1.971428e-03	ci left: 6.187357e-01	ci right 6.199571e-01	k: 1505012	n:2430000
KS ci ratio: 1.010144e-01	ci left: 5.880507e-04	ci right 6.510094e-04	k: 1504	n:2430000
TRIM41   2430000 perm   3138 sec   (774 perm/sec)   p_kst 6.189300e-04   p_cons 6.193465e-01   p_joint 2.347325e-03

Joint ci ratio: 5.175188e-02	ci left: 2.285182e-03	ci right 2.406987e-03	k: 5723	n:2440000
Cons ci ratio: 1.967352e-03	ci left: 6.187445e-01	ci right 6.199634e-01	k: 1511224	n:2440000
KS ci ratio: 1.007803e-01	ci left: 5.884371e-04	ci right 6.512825e-04	k: 1511	n:2440000
TRIM41   2440000 perm   3163 sec   (771 perm/sec)   p_kst 6.192623e-04   p_cons 6.193541e-01   p_joint 2.345492e-03

Joint ci ratio: 5.164372e-02	ci left: 2.285524e-03	ci right 2.407085e-03	k: 5747	n:2450000
Cons ci ratio: 1.963284e-03	ci left: 6.187574e-01	ci right 6.199738e-01	k: 1517446	n:2450000
KS ci ratio: 1.005478e-01	ci left: 5.888205e-04	ci right 6.515533e-04	k: 1518	n:2450000
TRIM41   2450000 perm   3185 sec   (769 perm/sec)   p_kst 6.195918e-04   p_cons 6.193657e-01   p_joint 2.345714e-03

Joint ci ratio: 5.154967e-02	ci left: 2.284660e-03	ci right 2.405947e-03	k: 5768	n:2460000
Cons ci ratio: 1.959254e-03	ci left: 6.187673e-01	ci right 6.199812e-01	k: 1523661	n:2460000
KS ci ratio: 1.002840e-01	ci left: 5.895973e-04	ci right 6.522383e-04	k: 1526	n:2460000
TRIM41   2460000 perm   3210 sec   (766 perm/sec)   p_kst 6.203252e-04   p_cons 6.193744e-01   p_joint 2.344715e-03

Joint ci ratio: 5.145167e-02	ci left: 2.284202e-03	ci right 2.405228e-03	k: 5790	n:2470000
Cons ci ratio: 1.955250e-03	ci left: 6.187767e-01	ci right 6.199882e-01	k: 1529875	n:2470000
KS ci ratio: 1.001202e-01	ci left: 5.891838e-04	ci right 6.516727e-04	k: 1531	n:2470000
TRIM41   2470000 perm   3233 sec   (764 perm/sec)   p_kst 6.198381e-04   p_cons 6.193826e-01   p_joint 2.344130e-03

Joint ci ratio: 5.131001e-02	ci left: 2.287729e-03	ci right 2.408599e-03	k: 5822	n:2480000
Cons ci ratio: 1.951172e-03	ci left: 6.188099e-01	ci right 6.200189e-01	k: 1536148	n:2480000
KS ci ratio: 9.989227e-02	ci left: 5.895601e-04	ci right 6.519381e-04	k: 1538	n:2480000
TRIM41   2480000 perm   3257 sec   (762 perm/sec)   p_kst 6.201613e-04   p_cons 6.194145e-01   p_joint 2.347581e-03

Outputting figure to mutsig2_images.part000000000181/TRIM41.2_2015_2480000_0.00062016_0.61941_0.0023476.png
                gene_name: TRIM41
               theta_stop: 0.100 
                    nperm: 2480000 
                     p_ks: 0.00062 
        ci_ks_bounds_left: 0.00059 
       ci_ks_bounds_right: 0.00065 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.0023 
     ci_joint_bounds_left: 0.0023 
    ci_joint_bounds_right: 0.0024 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000181
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 181 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1548>
Subject: Job 9878289: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1548>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000182> was used as the working directory.
Started at Fri Oct  5 23:01:20 2012
Results reported at Fri Oct  5 23:35:22 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000182.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000182.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 182  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000182.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2097.00 sec.
    Max Memory :      1999 MB
    Max Swap   :      4690 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
182
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 182
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 182: processing genes 16412 - 16502
Calculating significance of each gene.
Using projection method.
16412	TRIM52	1
16413	TRIM54	1
16414	TRIM55	1.143569e-01
16415	TRIM56	1
16416	TRIM58	1
16417	TRIM59	1
16418	TRIM6	1.996863e-02
16419	TRIM6-TRIM34	1
16420	TRIM60	1
16421	TRIM61	1
16422	TRIM62	1
16423	TRIM63	1
16424	TRIM65	1
16425	TRIM67	1
16426	TRIM68	1
16427	TRIM69	1
16428	TRIM7	1
16429	TRIM71	1
16430	TRIM72	1
16431	TRIM73	1
16432	TRIM74	1
16433	TRIM8	1
16434	TRIM9	1
16435	TRIML1	1
16436	TRIML2	1
16437	TRIO	1
16438	TRIOBP	1.196486e-02
16439	TRIP10	1
16440	TRIP11	1
16441	TRIP12	1.717618e-01
16442	TRIP13	8.615786e-02
16443	TRIP4	1
16444	TRIP6	1
16445	TRIT1	1
16446	TRMT1	1
16447	TRMT11	1
16448	TRMT112	1
16449	TRMT12	1
16450	TRMT2A	1
16451	TRMT2B	1
16452	TRMT5	1
16453	TRMT6	1
16454	TRMT61A	1
16455	TRMT61B	1
16456	TRMU	1
16457	TRNAU1AP	1
16458	TRNT1	1
16459	TRO	1
16460	TROAP	1
16461	TROVE2	1
16462	TRPA1	2.027532e-01
16463	TRPC1	1
16464	TRPC3	1
16465	TRPC4	1
16466	TRPC4AP	1
16467	TRPC5	1
16468	TRPC6	1.103994e-01
16469	TRPC7	1
16470	TRPM1	1
16471	TRPM2	1
16472	TRPM3	1
16473	TRPM4	1
16474	TRPM5	1
16475	TRPM6	1.403311e-01
16476	TRPM7	1
16477	TRPM8	1
16478	TRPS1	2.551382e-01
16479	TRPT1	1
16480	TRPV1	1
16481	TRPV2	1.830142e-01
16482	TRPV3	1
16483	TRPV4	1.944267e-01
16484	TRPV5	1
16485	TRPV6	1
16486	TRRAP	1
16487	TRUB1	1
16488	TRUB2	1
16489	TRYX3	2.303449e-02
16490	TSC1	1
16491	TSC2	1
16492	TSC22D1	1
16493	TSC22D2	1
16494	TSC22D3	1
16495	TSC22D4	1
16496	TSEN15	1
16497	TSEN2	1
16498	TSEN34	1
16499	TSEN54	1
16500	TSFM	1
In gene TSG101 the following bins exceed PROBCAP:
    PRAD-CH-5789	categ 6	N = 1213    n = 1	mu =   1.98e-07
16501	TSG101	2.665338e-02
16502	TSGA10	1
Done

Running MutSig 2:
Scatter job 182: processing genes 16412 - 16502
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TRIOBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.079888e-01	ci left: 3.072413e-02	ci right 3.795045e-02	k: 342	n:10000
Cons ci ratio: 1.677804e-02	ci left: 8.379602e-01	ci right 8.522382e-01	k: 8452	n:10000
KS ci ratio: 1.046878e+00	ci left: 6.923711e-04	ci right 2.222014e-03	k: 13	n:10000
TRIOBP   10000 perm   3 sec   (3180 perm/sec)   p_kst 1.300000e-03   p_cons 8.452000e-01   p_joint 3.420000e-02

Joint ci ratio: 1.608167e-01	ci left: 2.652586e-02	ci right 3.121245e-02	k: 576	n:20000
Cons ci ratio: 1.214522e-02	ci left: 8.337815e-01	ci right 8.440197e-01	k: 16779	n:20000
KS ci ratio: 7.538762e-01	ci left: 8.493734e-04	ci right 1.904225e-03	k: 26	n:20000
TRIOBP   20000 perm   12 sec   (1717 perm/sec)   p_kst 1.300000e-03   p_cons 8.389500e-01   p_joint 2.880000e-02

Joint ci ratio: 1.335074e-01	ci left: 2.606559e-02	ci right 2.982657e-02	k: 837	n:30000
Cons ci ratio: 9.963408e-03	ci left: 8.334446e-01	ci right 8.418233e-01	k: 25130	n:30000
KS ci ratio: 6.117725e-01	ci left: 9.527184e-04	ci right 1.815184e-03	k: 40	n:30000
TRIOBP   30000 perm   15 sec   (2012 perm/sec)   p_kst 1.333333e-03   p_cons 8.376667e-01   p_joint 2.790000e-02

Joint ci ratio: 1.291134e-01	ci left: 2.106890e-02	ci right 2.400098e-02	k: 900	n:40000
Cons ci ratio: 8.669435e-03	ci left: 8.327128e-01	ci right 8.399883e-01	k: 33455	n:40000
KS ci ratio: 5.654566e-01	ci left: 8.634696e-04	ci right 1.562198e-03	k: 47	n:40000
TRIOBP   40000 perm   18 sec   (2198 perm/sec)   p_kst 1.175000e-03   p_cons 8.363750e-01   p_joint 2.250000e-02

Joint ci ratio: 1.847859e-01	ci left: 8.095389e-03	ci right 9.762375e-03	k: 445	n:50000
Cons ci ratio: 7.434909e-03	ci left: 8.443792e-01	ci right 8.507004e-01	k: 42378	n:50000
KS ci ratio: 5.189155e-01	ci left: 8.461434e-04	ci right 1.454170e-03	k: 56	n:50000
TRIOBP   50000 perm   22 sec   (2318 perm/sec)   p_kst 1.120000e-03   p_cons 8.475600e-01   p_joint 8.900000e-03

Joint ci ratio: 1.917570e-01	ci left: 6.253247e-03	ci right 7.595113e-03	k: 414	n:60000
Cons ci ratio: 6.787348e-03	ci left: 8.446487e-01	ci right 8.504177e-01	k: 50853	n:60000
KS ci ratio: 5.016452e-01	ci left: 7.631894e-04	ci right 1.287013e-03	k: 60	n:60000
TRIOBP   60000 perm   25 sec   (2364 perm/sec)   p_kst 1.000000e-03   p_cons 8.475500e-01   p_joint 6.900000e-03

Joint ci ratio: 1.902452e-01	ci left: 5.454925e-03	ci right 6.615166e-03	k: 421	n:70000
Cons ci ratio: 6.276723e-03	ci left: 8.451606e-01	ci right 8.504963e-01	k: 59349	n:70000
KS ci ratio: 4.751355e-01	ci left: 7.418472e-04	ci right 1.215381e-03	k: 67	n:70000
TRIOBP   70000 perm   29 sec   (2377 perm/sec)   p_kst 9.571429e-04   p_cons 8.478429e-01   p_joint 6.014286e-03

Joint ci ratio: 1.914611e-01	ci left: 4.713369e-03	ci right 5.723024e-03	k: 416	n:80000
Cons ci ratio: 5.885092e-03	ci left: 8.447257e-01	ci right 8.497241e-01	k: 67779	n:80000
KS ci ratio: 4.494384e-01	ci left: 7.374724e-04	ci right 1.175025e-03	k: 75	n:80000
TRIOBP   80000 perm   33 sec   (2391 perm/sec)   p_kst 9.375000e-04   p_cons 8.472375e-01   p_joint 5.200000e-03

Joint ci ratio: 1.337383e-01	ci left: 8.822830e-03	ci right 1.009798e-02	k: 850	n:90000
Cons ci ratio: 5.767049e-03	ci left: 8.345369e-01	ci right 8.393747e-01	k: 75327	n:90000
KS ci ratio: 4.153114e-01	ci left: 7.842779e-04	ci right 1.204513e-03	k: 88	n:90000
TRIOBP   90000 perm   37 sec   (2419 perm/sec)   p_kst 9.777778e-04   p_cons 8.369667e-01   p_joint 9.444444e-03

Joint ci ratio: 1.318625e-01	ci left: 8.182061e-03	ci right 9.346701e-03	k: 875	n:100000
Cons ci ratio: 5.475840e-03	ci left: 8.344244e-01	ci right 8.390160e-01	k: 83673	n:100000
KS ci ratio: 3.998892e-01	ci left: 7.686726e-04	ci right 1.161203e-03	k: 95	n:100000
TRIOBP   100000 perm   41 sec   (2436 perm/sec)   p_kst 9.500000e-04   p_cons 8.367300e-01   p_joint 8.750000e-03

Joint ci ratio: 1.344127e-01	ci left: 7.156759e-03	ci right 8.196724e-03	k: 843	n:110000
Cons ci ratio: 5.221751e-03	ci left: 8.344931e-01	ci right 8.388710e-01	k: 92036	n:110000
KS ci ratio: 3.860664e-01	ci left: 7.561414e-04	ci right 1.125534e-03	k: 102	n:110000
TRIOBP   110000 perm   45 sec   (2446 perm/sec)   p_kst 9.272727e-04   p_cons 8.366909e-01   p_joint 7.663636e-03

Joint ci ratio: 1.329571e-01	ci left: 6.713297e-03	ci right 7.677416e-03	k: 862	n:120000
Cons ci ratio: 4.999734e-03	ci left: 8.345712e-01	ci right 8.387625e-01	k: 100401	n:120000
KS ci ratio: 3.685874e-01	ci left: 7.685639e-04	ci right 1.122936e-03	k: 112	n:120000
TRIOBP   120000 perm   49 sec   (2448 perm/sec)   p_kst 9.333333e-04   p_cons 8.366750e-01   p_joint 7.183333e-03

Joint ci ratio: 1.360426e-01	ci left: 5.914249e-03	ci right 6.784914e-03	k: 824	n:130000
Cons ci ratio: 4.802065e-03	ci left: 8.347411e-01	ci right 8.387669e-01	k: 108779	n:130000
KS ci ratio: 3.547322e-01	ci left: 7.723859e-04	ci right 1.112050e-03	k: 121	n:130000
TRIOBP   130000 perm   54 sec   (2427 perm/sec)   p_kst 9.307692e-04   p_cons 8.367615e-01   p_joint 6.338462e-03

Joint ci ratio: 1.152194e-01	ci left: 7.727305e-03	ci right 8.678947e-03	k: 1147	n:140000
Cons ci ratio: 4.627699e-03	ci left: 8.347963e-01	ci right 8.386755e-01	k: 117144	n:140000
KS ci ratio: 3.504576e-01	ci left: 7.367436e-04	ci right 1.055941e-03	k: 124	n:140000
TRIOBP   140000 perm   58 sec   (2412 perm/sec)   p_kst 8.857143e-04   p_cons 8.367429e-01   p_joint 8.192857e-03

Joint ci ratio: 1.110851e-01	ci left: 7.775749e-03	ci right 8.696745e-03	k: 1234	n:150000
Cons ci ratio: 4.295468e-03	ci left: 8.455501e-01	ci right 8.491965e-01	k: 127107	n:150000
KS ci ratio: 3.347541e-01	ci left: 7.607494e-04	ci right 1.072396e-03	k: 136	n:150000
TRIOBP   150000 perm   63 sec   (2394 perm/sec)   p_kst 9.066667e-04   p_cons 8.473800e-01   p_joint 8.226667e-03

Joint ci ratio: 9.803591e-02	ci left: 9.408460e-03	ci right 1.038442e-02	k: 1582	n:160000
Cons ci ratio: 4.153217e-03	ci left: 8.459739e-01	ci right 8.495009e-01	k: 135639	n:160000
KS ci ratio: 3.253897e-01	ci left: 7.590600e-04	ci right 1.059500e-03	k: 144	n:160000
TRIOBP   160000 perm   68 sec   (2363 perm/sec)   p_kst 9.000000e-04   p_cons 8.477438e-01   p_joint 9.887500e-03

Joint ci ratio: 8.458400e-02	ci left: 1.194845e-02	ci right 1.300945e-02	k: 2120	n:170000
Cons ci ratio: 4.027414e-03	ci left: 8.461427e-01	ci right 8.495631e-01	k: 144136	n:170000
KS ci ratio: 3.127046e-01	ci left: 7.793488e-04	ci right 1.073395e-03	k: 156	n:170000
TRIOBP   170000 perm   73 sec   (2344 perm/sec)   p_kst 9.176471e-04   p_cons 8.478588e-01   p_joint 1.247059e-02

Joint ci ratio: 8.409365e-02	ci left: 1.142591e-02	ci right 1.243434e-02	k: 2146	n:180000
Cons ci ratio: 3.917109e-03	ci left: 8.459815e-01	ci right 8.493073e-01	k: 152577	n:180000
KS ci ratio: 3.068982e-01	ci left: 7.667932e-04	ci right 1.049679e-03	k: 162	n:180000
TRIOBP   180000 perm   78 sec   (2303 perm/sec)   p_kst 9.000000e-04   p_cons 8.476500e-01   p_joint 1.192222e-02

Joint ci ratio: 8.476158e-02	ci left: 1.065951e-02	ci right 1.160813e-02	k: 2114	n:190000
Cons ci ratio: 3.813837e-03	ci left: 8.459443e-01	ci right 8.491819e-01	k: 161038	n:190000
KS ci ratio: 2.970375e-01	ci left: 7.799464e-04	ci right 1.056699e-03	k: 173	n:190000
TRIOBP   190000 perm   83 sec   (2295 perm/sec)   p_kst 9.105263e-04   p_cons 8.475684e-01   p_joint 1.112632e-02

Joint ci ratio: 8.470452e-02	ci left: 1.014599e-02	ci right 1.104828e-02	k: 2118	n:200000
Cons ci ratio: 3.717676e-03	ci left: 8.459571e-01	ci right 8.491129e-01	k: 169508	n:200000
KS ci ratio: 2.857603e-01	ci left: 8.058363e-04	ci right 1.078962e-03	k: 187	n:200000
TRIOBP   200000 perm   88 sec   (2285 perm/sec)   p_kst 9.350000e-04   p_cons 8.475400e-01   p_joint 1.059000e-02

Joint ci ratio: 8.478677e-02	ci left: 9.648763e-03	ci right 1.050770e-02	k: 2115	n:210000
Cons ci ratio: 3.624696e-03	ci left: 8.462373e-01	ci right 8.493150e-01	k: 178034	n:210000
KS ci ratio: 2.791567e-01	ci left: 8.072851e-04	ci right 1.073467e-03	k: 196	n:210000
TRIOBP   210000 perm   92 sec   (2275 perm/sec)   p_kst 9.333333e-04   p_cons 8.477810e-01   p_joint 1.007143e-02

Joint ci ratio: 8.402798e-02	ci left: 9.383660e-03	ci right 1.021115e-02	k: 2154	n:220000
Cons ci ratio: 3.685193e-03	ci left: 8.356688e-01	ci right 8.387586e-01	k: 184188	n:220000
KS ci ratio: 2.770592e-01	ci left: 7.832743e-04	ci right 1.039261e-03	k: 199	n:220000
TRIOBP   220000 perm   97 sec   (2265 perm/sec)   p_kst 9.045455e-04   p_cons 8.372182e-01   p_joint 9.790909e-03

Joint ci ratio: 8.454248e-02	ci left: 8.869171e-03	ci right 9.656314e-03	k: 2129	n:230000
Cons ci ratio: 3.603452e-03	ci left: 8.357590e-01	ci right 8.387803e-01	k: 192573	n:230000
KS ci ratio: 2.691020e-01	ci left: 7.978222e-04	ci right 1.049811e-03	k: 211	n:230000
TRIOBP   230000 perm   102 sec   (2250 perm/sec)   p_kst 9.173913e-04   p_cons 8.372739e-01   p_joint 9.256522e-03

Joint ci ratio: 7.707655e-02	ci left: 1.025134e-02	ci right 1.107721e-02	k: 2558	n:240000
Cons ci ratio: 3.528969e-03	ci left: 8.356834e-01	ci right 8.386418e-01	k: 200920	n:240000
KS ci ratio: 2.641646e-01	ci left: 7.956850e-04	ci right 1.041625e-03	k: 219	n:240000
TRIOBP   240000 perm   107 sec   (2239 perm/sec)   p_kst 9.125000e-04   p_cons 8.371667e-01   p_joint 1.065833e-02

Joint ci ratio: 7.552825e-02	ci left: 1.025720e-02	ci right 1.106621e-02	k: 2664	n:250000
Cons ci ratio: 3.458413e-03	ci left: 8.356546e-01	ci right 8.385536e-01	k: 209277	n:250000
KS ci ratio: 2.600609e-01	ci left: 7.900177e-04	ci right 1.029796e-03	k: 226	n:250000
TRIOBP   250000 perm   112 sec   (2225 perm/sec)   p_kst 9.040000e-04   p_cons 8.371080e-01   p_joint 1.065600e-02

Joint ci ratio: 7.416439e-02	ci left: 1.023633e-02	ci right 1.102848e-02	k: 2763	n:260000
Cons ci ratio: 3.390396e-03	ci left: 8.357521e-01	ci right 8.385942e-01	k: 217666	n:260000
KS ci ratio: 2.534467e-01	ci left: 8.028173e-04	ci right 1.039305e-03	k: 238	n:260000
TRIOBP   260000 perm   118 sec   (2206 perm/sec)   p_kst 9.153846e-04   p_cons 8.371769e-01   p_joint 1.062692e-02

Joint ci ratio: 7.533034e-02	ci left: 9.555416e-03	ci right 1.030701e-02	k: 2680	n:270000
Cons ci ratio: 3.325561e-03	ci left: 8.358986e-01	ci right 8.386867e-01	k: 226070	n:270000
KS ci ratio: 2.488054e-01	ci left: 8.043191e-04	ci right 1.036239e-03	k: 247	n:270000
TRIOBP   270000 perm   123 sec   (2193 perm/sec)   p_kst 9.148148e-04   p_cons 8.372963e-01   p_joint 9.925926e-03

Joint ci ratio: 8.019693e-02	ci left: 8.121267e-03	ci right 8.803251e-03	k: 2368	n:280000
Cons ci ratio: 3.261995e-03	ci left: 8.362286e-01	ci right 8.389644e-01	k: 234528	n:280000
KS ci ratio: 2.635832e-01	ci left: 6.853456e-04	ci right 8.966368e-04	k: 220	n:280000
TRIOBP   280000 perm   128 sec   (2180 perm/sec)   p_kst 7.857143e-04   p_cons 8.376000e-01   p_joint 8.457143e-03

Joint ci ratio: 8.422678e-02	ci left: 7.101408e-03	ci right 7.729186e-03	k: 2149	n:290000
Cons ci ratio: 3.204406e-03	ci left: 8.363252e-01	ci right 8.390129e-01	k: 242925	n:290000
KS ci ratio: 2.578139e-01	ci left: 6.939431e-04	ci right 9.024487e-04	k: 230	n:290000
TRIOBP   290000 perm   134 sec   (2166 perm/sec)   p_kst 7.931034e-04   p_cons 8.376724e-01   p_joint 7.410345e-03

Joint ci ratio: 8.266404e-02	ci left: 7.132329e-03	ci right 7.750577e-03	k: 2231	n:300000
Cons ci ratio: 3.146790e-03	ci left: 8.366733e-01	ci right 8.393135e-01	k: 251399	n:300000
KS ci ratio: 2.529333e-01	ci left: 6.988919e-04	ci right 9.042827e-04	k: 239	n:300000
TRIOBP   300000 perm   139 sec   (2152 perm/sec)   p_kst 7.966667e-04   p_cons 8.379967e-01   p_joint 7.436667e-03

Joint ci ratio: 8.221155e-02	ci left: 6.981214e-03	ci right 7.582891e-03	k: 2256	n:310000
Cons ci ratio: 3.096868e-03	ci left: 8.365849e-01	ci right 8.391829e-01	k: 259745	n:310000
KS ci ratio: 2.503402e-01	ci left: 6.914586e-04	ci right 8.922569e-04	k: 244	n:310000
TRIOBP   310000 perm   145 sec   (2138 perm/sec)   p_kst 7.870968e-04   p_cons 8.378871e-01   p_joint 7.277419e-03

Joint ci ratio: 7.705903e-02	ci left: 7.712635e-03	ci right 8.333824e-03	k: 2566	n:320000
Cons ci ratio: 3.047880e-03	ci left: 8.366247e-01	ci right 8.391816e-01	k: 268130	n:320000
KS ci ratio: 2.463505e-01	ci left: 6.932948e-04	ci right 8.909264e-04	k: 252	n:320000
TRIOBP   320000 perm   151 sec   (2119 perm/sec)   p_kst 7.875000e-04   p_cons 8.379062e-01   p_joint 8.018750e-03

Joint ci ratio: 7.061610e-02	ci left: 8.924690e-03	ci right 9.580941e-03	k: 3052	n:330000
Cons ci ratio: 2.998801e-03	ci left: 8.368752e-01	ci right 8.393916e-01	k: 276585	n:330000
KS ci ratio: 2.416208e-01	ci left: 7.007368e-04	ci right 8.960802e-04	k: 262	n:330000
TRIOBP   330000 perm   158 sec   (2084 perm/sec)   p_kst 7.939394e-04   p_cons 8.381364e-01   p_joint 9.248485e-03

Joint ci ratio: 6.981126e-02	ci left: 8.867347e-03	ci right 9.511648e-03	k: 3123	n:340000
Cons ci ratio: 2.954800e-03	ci left: 8.368545e-01	ci right 8.393338e-01	k: 284953	n:340000
KS ci ratio: 2.380278e-01	ci left: 7.022426e-04	ci right 8.946654e-04	k: 270	n:340000
TRIOBP   340000 perm   164 sec   (2069 perm/sec)   p_kst 7.941176e-04   p_cons 8.380971e-01   p_joint 9.185294e-03

Joint ci ratio: 6.923039e-02	ci left: 8.762774e-03	ci right 9.393966e-03	k: 3176	n:350000
Cons ci ratio: 2.911300e-03	ci left: 8.369643e-01	ci right 8.394073e-01	k: 293366	n:350000
KS ci ratio: 2.350123e-01	ci left: 7.009934e-04	ci right 8.902866e-04	k: 277	n:350000
TRIOBP   350000 perm   170 sec   (2053 perm/sec)   p_kst 7.914286e-04   p_cons 8.381886e-01   p_joint 9.074286e-03

Joint ci ratio: 6.936045e-02	ci left: 8.489296e-03	ci right 9.101983e-03	k: 3165	n:360000
Cons ci ratio: 2.871694e-03	ci left: 8.368759e-01	ci right 8.392853e-01	k: 301710	n:360000
KS ci ratio: 2.297013e-01	ci left: 7.155313e-04	ci right 9.037648e-04	k: 290	n:360000
TRIOBP   360000 perm   177 sec   (2029 perm/sec)   p_kst 8.055556e-04   p_cons 8.380833e-01   p_joint 8.791667e-03

Joint ci ratio: 7.013244e-02	ci left: 8.079218e-03	ci right 8.669061e-03	k: 3097	n:370000
Cons ci ratio: 2.831545e-03	ci left: 8.369958e-01	ci right 8.393718e-01	k: 310129	n:370000
KS ci ratio: 2.262292e-01	ci left: 7.191281e-04	ci right 9.050496e-04	k: 299	n:370000
TRIOBP   370000 perm   184 sec   (2012 perm/sec)   p_kst 8.081081e-04   p_cons 8.381865e-01   p_joint 8.370270e-03

Joint ci ratio: 7.135788e-02	ci left: 7.597696e-03	ci right 8.162478e-03	k: 2993	n:380000
Cons ci ratio: 2.793954e-03	ci left: 8.370199e-01	ci right 8.393644e-01	k: 318514	n:380000
KS ci ratio: 2.243682e-01	ci left: 7.126188e-04	ci right 8.951321e-04	k: 304	n:380000
TRIOBP   380000 perm   190 sec   (1996 perm/sec)   p_kst 8.000000e-04   p_cons 8.381947e-01   p_joint 7.876316e-03

Joint ci ratio: 7.120952e-02	ci left: 7.435601e-03	ci right 7.987136e-03	k: 3006	n:390000
Cons ci ratio: 2.759308e-03	ci left: 8.368964e-01	ci right 8.392114e-01	k: 326842	n:390000
KS ci ratio: 2.200794e-01	ci left: 7.234036e-04	ci right 9.046584e-04	k: 316	n:390000
TRIOBP   390000 perm   197 sec   (1982 perm/sec)   p_kst 8.102564e-04   p_cons 8.380564e-01   p_joint 7.707692e-03

Joint ci ratio: 6.508421e-02	ci left: 8.694884e-03	ci right 9.282262e-03	k: 3594	n:400000
Cons ci ratio: 2.725490e-03	ci left: 8.368219e-01	ci right 8.391082e-01	k: 335187	n:400000
KS ci ratio: 2.156996e-01	ci left: 7.360456e-04	ci right 9.163120e-04	k: 329	n:400000
TRIOBP   400000 perm   203 sec   (1970 perm/sec)   p_kst 8.225000e-04   p_cons 8.379675e-01   p_joint 8.985000e-03

Joint ci ratio: 6.528405e-02	ci left: 8.432392e-03	ci right 9.003852e-03	k: 3573	n:410000
Cons ci ratio: 2.691773e-03	ci left: 8.368637e-01	ci right 8.391218e-01	k: 343578	n:410000
KS ci ratio: 2.131317e-01	ci left: 7.365578e-04	ci right 9.145213e-04	k: 337	n:410000
TRIOBP   410000 perm   210 sec   (1957 perm/sec)   p_kst 8.219512e-04   p_cons 8.379951e-01   p_joint 8.714634e-03

Joint ci ratio: 6.438847e-02	ci left: 8.465861e-03	ci right 9.031424e-03	k: 3673	n:420000
Cons ci ratio: 2.660677e-03	ci left: 8.367604e-01	ci right 8.389921e-01	k: 351909	n:420000
KS ci ratio: 2.106534e-01	ci left: 7.370576e-04	ci right 9.128039e-04	k: 345	n:420000
TRIOBP   420000 perm   216 sec   (1942 perm/sec)   p_kst 8.214286e-04   p_cons 8.378786e-01   p_joint 8.745238e-03

Joint ci ratio: 6.461719e-02	ci left: 8.211744e-03	ci right 8.762352e-03	k: 3648	n:430000
Cons ci ratio: 2.629552e-03	ci left: 8.367740e-01	ci right 8.389796e-01	k: 360288	n:430000
KS ci ratio: 2.070919e-01	ci left: 7.463645e-04	ci right 9.209399e-04	k: 357	n:430000
TRIOBP   430000 perm   223 sec   (1928 perm/sec)   p_kst 8.302326e-04   p_cons 8.378791e-01   p_joint 8.483721e-03

Joint ci ratio: 6.521171e-02	ci left: 7.879740e-03	ci right 8.413131e-03	k: 3583	n:440000
Cons ci ratio: 2.598494e-03	ci left: 8.368920e-01	ci right 8.390717e-01	k: 368713	n:440000
KS ci ratio: 2.050968e-01	ci left: 7.444896e-04	ci right 9.167386e-04	k: 364	n:440000
TRIOBP   440000 perm   230 sec   (1915 perm/sec)   p_kst 8.272727e-04   p_cons 8.379841e-01   p_joint 8.143182e-03

Joint ci ratio: 6.258667e-02	ci left: 8.371651e-03	ci right 8.914704e-03	k: 3888	n:450000
Cons ci ratio: 2.569729e-03	ci left: 8.368756e-01	ci right 8.390311e-01	k: 377080	n:450000
KS ci ratio: 2.020739e-01	ci left: 7.511441e-04	ci right 9.220551e-04	k: 375	n:450000
TRIOBP   450000 perm   237 sec   (1901 perm/sec)   p_kst 8.333333e-04   p_cons 8.379556e-01   p_joint 8.640000e-03

Joint ci ratio: 6.189810e-02	ci left: 8.375846e-03	ci right 8.912979e-03	k: 3975	n:460000
Cons ci ratio: 2.541981e-03	ci left: 8.368514e-01	ci right 8.389835e-01	k: 385443	n:460000
KS ci ratio: 1.999579e-01	ci left: 7.513308e-04	ci right 9.202759e-04	k: 383	n:460000
TRIOBP   460000 perm   244 sec   (1888 perm/sec)   p_kst 8.326087e-04   p_cons 8.379196e-01   p_joint 8.641304e-03

Joint ci ratio: 6.132319e-02	ci left: 8.354750e-03	ci right 8.885377e-03	k: 4050	n:470000
Cons ci ratio: 2.515112e-03	ci left: 8.368283e-01	ci right 8.389378e-01	k: 393806	n:470000
KS ci ratio: 1.964084e-01	ci left: 7.636548e-04	ci right 9.319583e-04	k: 397	n:470000
TRIOBP   470000 perm   251 sec   (1873 perm/sec)   p_kst 8.446809e-04   p_cons 8.378851e-01   p_joint 8.617021e-03

Joint ci ratio: 6.142056e-02	ci left: 8.156051e-03	ci right 8.674909e-03	k: 4038	n:480000
Cons ci ratio: 2.488734e-03	ci left: 8.368439e-01	ci right 8.389312e-01	k: 402187	n:480000
KS ci ratio: 1.944638e-01	ci left: 7.635965e-04	ci right 9.300237e-04	k: 405	n:480000
TRIOBP   480000 perm   258 sec   (1859 perm/sec)   p_kst 8.437500e-04   p_cons 8.378896e-01   p_joint 8.412500e-03

Joint ci ratio: 6.078424e-02	ci left: 8.160420e-03	ci right 8.673989e-03	k: 4123	n:490000
Cons ci ratio: 2.463798e-03	ci left: 8.367894e-01	ci right 8.388556e-01	k: 410534	n:490000
KS ci ratio: 1.923435e-01	ci left: 7.654910e-04	ci right 9.302991e-04	k: 414	n:490000
TRIOBP   490000 perm   266 sec   (1841 perm/sec)   p_kst 8.448980e-04   p_cons 8.378245e-01   p_joint 8.414286e-03

Joint ci ratio: 6.067084e-02	ci left: 8.028710e-03	ci right 8.533013e-03	k: 4139	n:500000
Cons ci ratio: 2.437280e-03	ci left: 8.369958e-01	ci right 8.390403e-01	k: 419010	n:500000
KS ci ratio: 1.893990e-01	ci left: 7.749392e-04	ci right 9.389336e-04	k: 427	n:500000
TRIOBP   500000 perm   275 sec   (1821 perm/sec)   p_kst 8.540000e-04   p_cons 8.380200e-01   p_joint 8.278000e-03

Joint ci ratio: 6.149731e-02	ci left: 7.660778e-03	ci right 8.148759e-03	k: 4030	n:510000
Cons ci ratio: 2.414089e-03	ci left: 8.369132e-01	ci right 8.389379e-01	k: 427343	n:510000
KS ci ratio: 1.878693e-01	ci left: 7.728216e-04	ci right 9.348961e-04	k: 434	n:510000
TRIOBP   510000 perm   283 sec   (1799 perm/sec)   p_kst 8.509804e-04   p_cons 8.379275e-01   p_joint 7.901961e-03

Joint ci ratio: 6.211053e-02	ci left: 7.365739e-03	ci right 7.839772e-03	k: 3952	n:520000
Cons ci ratio: 2.389719e-03	ci left: 8.370420e-01	ci right 8.390466e-01	k: 435784	n:520000
KS ci ratio: 1.859553e-01	ci left: 7.744575e-04	ci right 9.350339e-04	k: 443	n:520000
TRIOBP   520000 perm   292 sec   (1784 perm/sec)   p_kst 8.519231e-04   p_cons 8.380462e-01   p_joint 7.600000e-03

Joint ci ratio: 7.177637e-02	ci left: 5.395301e-03	ci right 5.798811e-03	k: 2965	n:530000
Cons ci ratio: 2.367075e-03	ci left: 8.370507e-01	ci right 8.390362e-01	k: 444164	n:530000
KS ci ratio: 1.834917e-01	ci left: 7.814400e-04	ci right 9.410787e-04	k: 455	n:530000
TRIOBP   530000 perm   299 sec   (1772 perm/sec)   p_kst 8.584906e-04   p_cons 8.380453e-01   p_joint 5.594340e-03

Joint ci ratio: 7.467006e-02	ci left: 4.888118e-03	ci right 5.269074e-03	k: 2741	n:540000
Cons ci ratio: 2.345350e-03	ci left: 8.370257e-01	ci right 8.389929e-01	k: 452526	n:540000
KS ci ratio: 1.820996e-01	ci left: 7.793386e-04	ci right 9.372069e-04	k: 462	n:540000
TRIOBP   540000 perm   307 sec   (1760 perm/sec)   p_kst 8.555556e-04   p_cons 8.380111e-01   p_joint 5.075926e-03

Joint ci ratio: 7.521299e-02	ci left: 4.729648e-03	ci right 5.101051e-03	k: 2702	n:550000
Cons ci ratio: 2.323170e-03	ci left: 8.371238e-01	ci right 8.390726e-01	k: 460955	n:550000
KS ci ratio: 1.805465e-01	ci left: 7.790540e-04	ci right 9.353718e-04	k: 470	n:550000
TRIOBP   550000 perm   315 sec   (1746 perm/sec)   p_kst 8.545455e-04   p_cons 8.381000e-01   p_joint 4.912727e-03

Joint ci ratio: 7.662480e-02	ci left: 4.473490e-03	ci right 4.831664e-03	k: 2604	n:560000
Cons ci ratio: 2.301789e-03	ci left: 8.371970e-01	ci right 8.391280e-01	k: 469372	n:560000
KS ci ratio: 1.784741e-01	ci left: 7.839028e-04	ci right 9.391930e-04	k: 481	n:560000
TRIOBP   560000 perm   323 sec   (1732 perm/sec)   p_kst 8.589286e-04   p_cons 8.381643e-01   p_joint 4.650000e-03

Joint ci ratio: 7.598593e-02	ci left: 4.470727e-03	ci right 4.825564e-03	k: 2648	n:570000
Cons ci ratio: 2.280057e-03	ci left: 8.373785e-01	ci right 8.392917e-01	k: 477852	n:570000
KS ci ratio: 1.770113e-01	ci left: 7.835608e-04	ci right 9.373748e-04	k: 489	n:570000
TRIOBP   570000 perm   331 sec   (1721 perm/sec)   p_kst 8.578947e-04   p_cons 8.383368e-01   p_joint 4.645614e-03

Joint ci ratio: 7.550375e-02	ci left: 4.451154e-03	ci right 4.802098e-03	k: 2682	n:580000
Cons ci ratio: 2.260536e-03	ci left: 8.373603e-01	ci right 8.392570e-01	k: 486220	n:580000
KS ci ratio: 1.761155e-01	ci left: 7.782906e-04	ci right 9.302147e-04	k: 494	n:580000
TRIOBP   580000 perm   340 sec   (1705 perm/sec)   p_kst 8.517241e-04   p_cons 8.383103e-01   p_joint 4.624138e-03

Joint ci ratio: 7.467253e-02	ci left: 4.475499e-03	ci right 4.824308e-03	k: 2742	n:590000
Cons ci ratio: 2.241523e-03	ci left: 8.373410e-01	ci right 8.392217e-01	k: 494587	n:590000
KS ci ratio: 1.741904e-01	ci left: 7.829262e-04	ci right 9.339088e-04	k: 505	n:590000
TRIOBP   590000 perm   348 sec   (1694 perm/sec)   p_kst 8.559322e-04   p_cons 8.382831e-01   p_joint 4.647458e-03

Joint ci ratio: 6.843733e-02	ci left: 5.252164e-03	ci right 5.625969e-03	k: 3262	n:600000
Cons ci ratio: 2.222913e-03	ci left: 8.373309e-01	ci right 8.391959e-01	k: 502959	n:600000
KS ci ratio: 1.729981e-01	ci left: 7.810371e-04	ci right 9.305168e-04	k: 512	n:600000
TRIOBP   600000 perm   357 sec   (1682 perm/sec)   p_kst 8.533333e-04   p_cons 8.382650e-01   p_joint 5.436667e-03

Joint ci ratio: 6.783688e-02	ci left: 5.259525e-03	ci right 5.630441e-03	k: 3320	n:610000
Cons ci ratio: 2.204079e-03	ci left: 8.374049e-01	ci right 8.392542e-01	k: 511382	n:610000
KS ci ratio: 1.711723e-01	ci left: 7.854895e-04	ci right 9.340709e-04	k: 523	n:610000
TRIOBP   610000 perm   366 sec   (1666 perm/sec)   p_kst 8.573770e-04   p_cons 8.383311e-01   p_joint 5.442623e-03

Joint ci ratio: 6.931358e-02	ci left: 4.954318e-03	ci right 5.311621e-03	k: 3181	n:620000
Cons ci ratio: 2.186197e-03	ci left: 8.374167e-01	ci right 8.392511e-01	k: 519768	n:620000
KS ci ratio: 1.695618e-01	ci left: 7.882617e-04	ci right 9.358213e-04	k: 533	n:620000
TRIOBP   620000 perm   375 sec   (1653 perm/sec)   p_kst 8.596774e-04   p_cons 8.383355e-01   p_joint 5.130645e-03

Joint ci ratio: 7.041464e-02	ci left: 4.722820e-03	ci right 5.069059e-03	k: 3083	n:630000
Cons ci ratio: 2.168591e-03	ci left: 8.374474e-01	ci right 8.392670e-01	k: 528166	n:630000
KS ci ratio: 1.683058e-01	ci left: 7.879111e-04	ci right 9.342018e-04	k: 541	n:630000
TRIOBP   630000 perm   384 sec   (1639 perm/sec)   p_kst 8.587302e-04   p_cons 8.383587e-01   p_joint 4.893651e-03

Joint ci ratio: 6.304385e-02	ci left: 5.815331e-03	ci right 6.195411e-03	k: 3842	n:640000
Cons ci ratio: 2.151949e-03	ci left: 8.374082e-01	ci right 8.392137e-01	k: 536520	n:640000
KS ci ratio: 1.676888e-01	ci left: 7.815870e-04	ci right 9.261177e-04	k: 545	n:640000
TRIOBP   640000 perm   394 sec   (1624 perm/sec)   p_kst 8.515625e-04   p_cons 8.383125e-01   p_joint 6.003125e-03

Joint ci ratio: 6.480904e-02	ci left: 5.415484e-03	ci right 5.779713e-03	k: 3637	n:650000
Cons ci ratio: 2.135587e-03	ci left: 8.373826e-01	ci right 8.391744e-01	k: 544882	n:650000
KS ci ratio: 1.664737e-01	ci left: 7.813556e-04	ci right 9.246916e-04	k: 553	n:650000
TRIOBP   650000 perm   403 sec   (1612 perm/sec)   p_kst 8.507692e-04   p_cons 8.382800e-01   p_joint 5.595385e-03

Joint ci ratio: 6.435097e-02	ci left: 5.410946e-03	ci right 5.772202e-03	k: 3689	n:660000
Cons ci ratio: 2.119581e-03	ci left: 8.373594e-01	ci right 8.391376e-01	k: 553245	n:660000
KS ci ratio: 1.654321e-01	ci left: 7.796824e-04	ci right 9.217274e-04	k: 560	n:660000
TRIOBP   660000 perm   412 sec   (1600 perm/sec)   p_kst 8.484848e-04   p_cons 8.382500e-01   p_joint 5.589394e-03

Joint ci ratio: 6.394545e-02	ci left: 5.399209e-03	ci right 5.757325e-03	k: 3736	n:670000
Cons ci ratio: 2.104382e-03	ci left: 8.372786e-01	ci right 8.390439e-01	k: 561569	n:670000
KS ci ratio: 1.641208e-01	ci left: 7.809243e-04	ci right 9.219565e-04	k: 569	n:670000
TRIOBP   670000 perm   422 sec   (1587 perm/sec)   p_kst 8.492537e-04   p_cons 8.381627e-01   p_joint 5.576119e-03

Joint ci ratio: 6.425133e-02	ci left: 5.269152e-03	ci right 5.620376e-03	k: 3701	n:680000
Cons ci ratio: 2.089582e-03	ci left: 8.371899e-01	ci right 8.389425e-01	k: 569886	n:680000
KS ci ratio: 1.635484e-01	ci left: 7.750811e-04	ci right 9.145219e-04	k: 573	n:680000
TRIOBP   680000 perm   431 sec   (1577 perm/sec)   p_kst 8.426471e-04   p_cons 8.380676e-01   p_joint 5.442647e-03

Joint ci ratio: 6.519905e-02	ci left: 5.041631e-03	ci right 5.382833e-03	k: 3595	n:690000
Cons ci ratio: 2.073640e-03	ci left: 8.372941e-01	ci right 8.390335e-01	k: 578334	n:690000
KS ci ratio: 1.624206e-01	ci left: 7.749694e-04	ci right 9.133347e-04	k: 581	n:690000
TRIOBP   690000 perm   441 sec   (1564 perm/sec)   p_kst 8.420290e-04   p_cons 8.381652e-01   p_joint 5.210145e-03

Joint ci ratio: 6.511055e-02	ci left: 4.983656e-03	ci right 5.320459e-03	k: 3605	n:700000
Cons ci ratio: 2.059020e-03	ci left: 8.372679e-01	ci right 8.389950e-01	k: 586693	n:700000
KS ci ratio: 1.600982e-01	ci left: 7.872045e-04	ci right 9.255514e-04	k: 598	n:700000
TRIOBP   700000 perm   450 sec   (1554 perm/sec)   p_kst 8.542857e-04   p_cons 8.381329e-01   p_joint 5.150000e-03

Joint ci ratio: 6.467275e-02	ci left: 4.981358e-03	ci right 5.315657e-03	k: 3654	n:710000
Cons ci ratio: 2.045162e-03	ci left: 8.371818e-01	ci right 8.388971e-01	k: 595009	n:710000
KS ci ratio: 1.585179e-01	ci left: 7.923449e-04	ci right 9.300899e-04	k: 610	n:710000
TRIOBP   710000 perm   460 sec   (1543 perm/sec)   p_kst 8.591549e-04   p_cons 8.380408e-01   p_joint 5.146479e-03

Joint ci ratio: 6.465730e-02	ci left: 4.914900e-03	ci right 5.244657e-03	k: 3656	n:720000
Cons ci ratio: 2.030373e-03	ci left: 8.372596e-01	ci right 8.389627e-01	k: 603441	n:720000
KS ci ratio: 1.576177e-01	ci left: 7.906777e-04	ci right 9.272786e-04	k: 617	n:720000
TRIOBP   720000 perm   470 sec   (1532 perm/sec)   p_kst 8.569444e-04   p_cons 8.381125e-01   p_joint 5.077778e-03

Joint ci ratio: 6.470403e-02	ci left: 4.840828e-03	ci right 5.165859e-03	k: 3651	n:730000
Cons ci ratio: 2.016491e-03	ci left: 8.372557e-01	ci right 8.389471e-01	k: 611815	n:730000
KS ci ratio: 1.559852e-01	ci left: 7.969562e-04	ci right 9.330823e-04	k: 630	n:730000
TRIOBP   730000 perm   481 sec   (1518 perm/sec)   p_kst 8.630137e-04   p_cons 8.381027e-01   p_joint 5.001370e-03

Joint ci ratio: 6.533852e-02	ci left: 4.682342e-03	ci right 4.999931e-03	k: 3581	n:740000
Cons ci ratio: 2.002780e-03	ci left: 8.372669e-01	ci right 8.389467e-01	k: 620200	n:740000
KS ci ratio: 1.545224e-01	ci left: 8.017729e-04	ci right 9.373186e-04	k: 642	n:740000
TRIOBP   740000 perm   492 sec   (1504 perm/sec)   p_kst 8.675676e-04   p_cons 8.381081e-01   p_joint 4.839189e-03

Joint ci ratio: 6.490511e-02	ci left: 4.682869e-03	ci right 4.998308e-03	k: 3629	n:750000
Cons ci ratio: 1.989697e-03	ci left: 8.372296e-01	ci right 8.388984e-01	k: 628549	n:750000
KS ci ratio: 1.538068e-01	ci left: 7.987739e-04	ci right 9.331295e-04	k: 648	n:750000
TRIOBP   750000 perm   502 sec   (1495 perm/sec)   p_kst 8.640000e-04   p_cons 8.380653e-01   p_joint 4.838667e-03

Joint ci ratio: 6.624053e-02	ci left: 4.434866e-03	ci right 4.739981e-03	k: 3485	n:760000
Cons ci ratio: 1.976455e-03	ci left: 8.372501e-01	ci right 8.389078e-01	k: 636941	n:760000
KS ci ratio: 1.526352e-01	ci left: 8.009172e-04	ci right 9.345134e-04	k: 658	n:760000
TRIOBP   760000 perm   513 sec   (1481 perm/sec)   p_kst 8.657895e-04   p_cons 8.380803e-01   p_joint 4.585526e-03

Joint ci ratio: 6.593917e-02	ci left: 4.418141e-03	ci right 4.720670e-03	k: 3517	n:770000
Cons ci ratio: 1.963549e-03	ci left: 8.372597e-01	ci right 8.389066e-01	k: 645325	n:770000
KS ci ratio: 1.519453e-01	ci left: 7.980109e-04	ci right 9.304659e-04	k: 664	n:770000
TRIOBP   770000 perm   524 sec   (1470 perm/sec)   p_kst 8.623377e-04   p_cons 8.380844e-01   p_joint 4.567532e-03

Joint ci ratio: 6.558623e-02	ci left: 4.409414e-03	ci right 4.709668e-03	k: 3555	n:780000
Cons ci ratio: 1.951104e-03	ci left: 8.372395e-01	ci right 8.388759e-01	k: 653686	n:780000
KS ci ratio: 1.513777e-01	ci left: 7.939468e-04	ci right 9.251903e-04	k: 669	n:780000
TRIOBP   780000 perm   534 sec   (1461 perm/sec)   p_kst 8.576923e-04   p_cons 8.380590e-01   p_joint 4.557692e-03

Joint ci ratio: 6.517517e-02	ci left: 4.409630e-03	ci right 4.707945e-03	k: 3600	n:790000
Cons ci ratio: 1.938287e-03	ci left: 8.373049e-01	ci right 8.389306e-01	k: 662114	n:790000
KS ci ratio: 1.505932e-01	ci left: 7.924228e-04	ci right 9.226744e-04	k: 676	n:790000
TRIOBP   790000 perm   544 sec   (1451 perm/sec)   p_kst 8.556962e-04   p_cons 8.381190e-01   p_joint 4.556962e-03

Joint ci ratio: 6.479852e-02	ci left: 4.406156e-03	ci right 4.702449e-03	k: 3642	n:800000
Cons ci ratio: 1.926430e-03	ci left: 8.372684e-01	ci right 8.388841e-01	k: 670462	n:800000
KS ci ratio: 1.497113e-01	ci left: 7.921418e-04	ci right 9.215164e-04	k: 684	n:800000
TRIOBP   800000 perm   555 sec   (1443 perm/sec)   p_kst 8.550000e-04   p_cons 8.380775e-01   p_joint 4.552500e-03

Joint ci ratio: 6.426212e-02	ci left: 4.425854e-03	ci right 4.720916e-03	k: 3703	n:810000
Cons ci ratio: 1.914499e-03	ci left: 8.372737e-01	ci right 8.388794e-01	k: 678843	n:810000
KS ci ratio: 1.482039e-01	ci left: 7.990023e-04	ci right 9.280671e-04	k: 698	n:810000
TRIOBP   810000 perm   565 sec   (1434 perm/sec)   p_kst 8.617284e-04   p_cons 8.380778e-01   p_joint 4.571605e-03

Joint ci ratio: 6.483791e-02	ci left: 4.293882e-03	ci right 4.582807e-03	k: 3638	n:820000
Cons ci ratio: 1.902454e-03	ci left: 8.373266e-01	ci right 8.389223e-01	k: 687263	n:820000
KS ci ratio: 1.476770e-01	ci left: 7.951301e-04	ci right 9.230724e-04	k: 703	n:820000
TRIOBP   820000 perm   576 sec   (1424 perm/sec)   p_kst 8.573171e-04   p_cons 8.381256e-01   p_joint 4.436585e-03

Joint ci ratio: 6.445824e-02	ci left: 4.293118e-03	ci right 4.580237e-03	k: 3681	n:830000
Cons ci ratio: 1.890877e-03	ci left: 8.373432e-01	ci right 8.389292e-01	k: 695654	n:830000
KS ci ratio: 1.465364e-01	ci left: 7.983155e-04	ci right 9.256914e-04	k: 714	n:830000
TRIOBP   830000 perm   587 sec   (1413 perm/sec)   p_kst 8.602410e-04   p_cons 8.381373e-01   p_joint 4.434940e-03

Joint ci ratio: 6.462765e-02	ci left: 4.219750e-03	ci right 4.502732e-03	k: 3662	n:840000
Cons ci ratio: 1.879558e-03	ci left: 8.373523e-01	ci right 8.389287e-01	k: 704039	n:840000
KS ci ratio: 1.457235e-01	ci left: 7.979873e-04	ci right 9.245431e-04	k: 722	n:840000
TRIOBP   840000 perm   599 sec   (1402 perm/sec)   p_kst 8.595238e-04   p_cons 8.381417e-01   p_joint 4.359524e-03

Joint ci ratio: 6.096774e-02	ci left: 4.692403e-03	ci right 4.988634e-03	k: 4113	n:850000
Cons ci ratio: 1.868140e-03	ci left: 8.374048e-01	ci right 8.389718e-01	k: 712461	n:850000
KS ci ratio: 1.446273e-01	ci left: 8.010704e-04	ci right 9.270769e-04	k: 733	n:850000
TRIOBP   850000 perm   611 sec   (1392 perm/sec)   p_kst 8.623529e-04   p_cons 8.381894e-01   p_joint 4.838824e-03

Joint ci ratio: 6.054213e-02	ci left: 4.704259e-03	ci right 4.999092e-03	k: 4171	n:860000
Cons ci ratio: 1.856880e-03	ci left: 8.374631e-01	ci right 8.390207e-01	k: 720889	n:860000
KS ci ratio: 1.434591e-01	ci left: 8.052064e-04	ci right 9.307528e-04	k: 745	n:860000
TRIOBP   860000 perm   622 sec   (1383 perm/sec)   p_kst 8.662791e-04   p_cons 8.382430e-01   p_joint 4.850000e-03

Joint ci ratio: 5.657828e-02	ci left: 5.332067e-03	ci right 5.643653e-03	k: 4773	n:870000
Cons ci ratio: 1.846095e-03	ci left: 8.374797e-01	ci right 8.390284e-01	k: 729282	n:870000
KS ci ratio: 1.423187e-01	ci left: 8.092513e-04	ci right 9.343403e-04	k: 757	n:870000
TRIOBP   870000 perm   632 sec   (1376 perm/sec)   p_kst 8.701149e-04   p_cons 8.382552e-01   p_joint 5.486207e-03

Joint ci ratio: 5.627274e-02	ci left: 5.329732e-03	ci right 5.639446e-03	k: 4825	n:880000
Cons ci ratio: 1.835180e-03	ci left: 8.375427e-01	ci right 8.390823e-01	k: 737716	n:880000
KS ci ratio: 1.419450e-01	ci left: 8.044389e-04	ci right 9.284299e-04	k: 761	n:880000
TRIOBP   880000 perm   643 sec   (1369 perm/sec)   p_kst 8.647727e-04   p_cons 8.383136e-01   p_joint 5.482955e-03

Joint ci ratio: 5.600673e-02	ci left: 5.320807e-03	ci right 5.628493e-03	k: 4871	n:890000
Cons ci ratio: 1.824910e-03	ci left: 8.375368e-01	ci right 8.390677e-01	k: 746090	n:890000
KS ci ratio: 1.412058e-01	ci left: 8.040706e-04	ci right 9.273051e-04	k: 769	n:890000
TRIOBP   890000 perm   654 sec   (1361 perm/sec)   p_kst 8.640449e-04   p_cons 8.383034e-01   p_joint 5.473034e-03

Joint ci ratio: 5.654777e-02	ci left: 5.160891e-03	ci right 5.462306e-03	k: 4779	n:900000
Cons ci ratio: 1.814833e-03	ci left: 8.375277e-01	ci right 8.390501e-01	k: 754461	n:900000
KS ci ratio: 1.401179e-01	ci left: 8.080007e-04	ci right 9.308038e-04	k: 781	n:900000
TRIOBP   900000 perm   666 sec   (1352 perm/sec)   p_kst 8.677778e-04   p_cons 8.382900e-01   p_joint 5.310000e-03

Joint ci ratio: 5.626613e-02	ci left: 5.156181e-03	ci right 5.455773e-03	k: 4827	n:910000
Cons ci ratio: 1.804657e-03	ci left: 8.375584e-01	ci right 8.390724e-01	k: 762868	n:910000
KS ci ratio: 1.393185e-01	ci left: 8.086660e-04	ci right 9.308108e-04	k: 790	n:910000
TRIOBP   910000 perm   678 sec   (1343 perm/sec)   p_kst 8.681319e-04   p_cons 8.383165e-01   p_joint 5.304396e-03

Joint ci ratio: 5.606964e-02	ci left: 5.136571e-03	ci right 5.433948e-03	k: 4861	n:920000
Cons ci ratio: 1.794960e-03	ci left: 8.375417e-01	ci right 8.390475e-01	k: 771232	n:920000
KS ci ratio: 1.387062e-01	ci left: 8.072202e-04	ci right 9.285665e-04	k: 797	n:920000
TRIOBP   920000 perm   689 sec   (1334 perm/sec)   p_kst 8.663043e-04   p_cons 8.382957e-01   p_joint 5.283696e-03

Joint ci ratio: 5.292380e-02	ci left: 5.709274e-03	ci right 6.020697e-03	k: 5453	n:930000
Cons ci ratio: 1.785439e-03	ci left: 8.375221e-01	ci right 8.390199e-01	k: 779593	n:930000
KS ci ratio: 1.379306e-01	ci left: 8.078830e-04	ci right 9.285940e-04	k: 806	n:930000
TRIOBP   930000 perm   701 sec   (1327 perm/sec)   p_kst 8.666667e-04   p_cons 8.382720e-01   p_joint 5.863441e-03

Joint ci ratio: 5.267349e-02	ci left: 5.703126e-03	ci right 6.012697e-03	k: 5505	n:940000
Cons ci ratio: 1.776047e-03	ci left: 8.375062e-01	ci right 8.389960e-01	k: 787957	n:940000
KS ci ratio: 1.373364e-01	ci left: 8.064788e-04	ci right 9.264185e-04	k: 813	n:940000
TRIOBP   940000 perm   714 sec   (1317 perm/sec)   p_kst 8.648936e-04   p_cons 8.382521e-01   p_joint 5.856383e-03

Joint ci ratio: 5.244092e-02	ci left: 5.693993e-03	ci right 6.001663e-03	k: 5554	n:950000
Cons ci ratio: 1.766274e-03	ci left: 8.375718e-01	ci right 8.390535e-01	k: 796398	n:950000
KS ci ratio: 1.366665e-01	ci left: 8.061220e-04	ci right 9.253762e-04	k: 821	n:950000
TRIOBP   950000 perm   726 sec   (1308 perm/sec)   p_kst 8.642105e-04   p_cons 8.383137e-01   p_joint 5.846316e-03

Joint ci ratio: 5.248055e-02	ci left: 5.626452e-03	ci right 5.930708e-03	k: 5546	n:960000
Cons ci ratio: 1.757193e-03	ci left: 8.375536e-01	ci right 8.390277e-01	k: 804760	n:960000
KS ci ratio: 1.357609e-01	ci left: 8.087928e-04	ci right 9.275854e-04	k: 832	n:960000
TRIOBP   960000 perm   738 sec   (1301 perm/sec)   p_kst 8.666667e-04   p_cons 8.382917e-01   p_joint 5.777083e-03

Joint ci ratio: 5.268791e-02	ci left: 5.524693e-03	ci right 5.824663e-03	k: 5503	n:970000
Cons ci ratio: 1.748138e-03	ci left: 8.375534e-01	ci right 8.390198e-01	k: 813139	n:970000
KS ci ratio: 1.347135e-01	ci left: 8.134035e-04	ci right 9.318777e-04	k: 845	n:970000
TRIOBP   970000 perm   750 sec   (1293 perm/sec)   p_kst 8.711340e-04   p_cons 8.382876e-01   p_joint 5.673196e-03

Joint ci ratio: 5.348685e-02	ci left: 5.305190e-03	ci right 5.597745e-03	k: 5341	n:980000
Cons ci ratio: 1.738960e-03	ci left: 8.375941e-01	ci right 8.390529e-01	k: 821558	n:980000
KS ci ratio: 1.342385e-01	ci left: 8.110199e-04	ci right 9.286971e-04	k: 851	n:980000
TRIOBP   980000 perm   762 sec   (1285 perm/sec)   p_kst 8.683673e-04   p_cons 8.383245e-01   p_joint 5.450000e-03

Joint ci ratio: 5.357410e-02	ci left: 5.234656e-03	ci right 5.523806e-03	k: 5324	n:990000
Cons ci ratio: 1.730814e-03	ci left: 8.374943e-01	ci right 8.389461e-01	k: 829839	n:990000
KS ci ratio: 1.333028e-01	ci left: 8.145434e-04	ci right 9.318428e-04	k: 863	n:990000
TRIOBP   990000 perm   775 sec   (1277 perm/sec)   p_kst 8.717172e-04   p_cons 8.382212e-01   p_joint 5.377778e-03

Joint ci ratio: 5.349481e-02	ci left: 5.198092e-03	ci right 5.484784e-03	k: 5340	n:1000000
Cons ci ratio: 1.722120e-03	ci left: 8.375008e-01	ci right 8.389453e-01	k: 838224	n:1000000
KS ci ratio: 1.327662e-01	ci left: 8.131650e-04	ci right 9.297573e-04	k: 870	n:1000000
TRIOBP   1000000 perm   788 sec   (1268 perm/sec)   p_kst 8.700000e-04   p_cons 8.382240e-01   p_joint 5.340000e-03

Joint ci ratio: 5.389844e-02	ci left: 5.069449e-03	ci right 5.351222e-03	k: 5261	n:1010000
Cons ci ratio: 1.714069e-03	ci left: 8.374258e-01	ci right 8.388634e-01	k: 846527	n:1010000
KS ci ratio: 1.323114e-01	ci left: 8.108574e-04	ci right 9.266893e-04	k: 876	n:1010000
TRIOBP   1010000 perm   801 sec   (1262 perm/sec)   p_kst 8.673267e-04   p_cons 8.381455e-01   p_joint 5.208911e-03

Joint ci ratio: 5.414863e-02	ci left: 4.973319e-03	ci right 5.251071e-03	k: 5213	n:1020000
Cons ci ratio: 1.705625e-03	ci left: 8.374328e-01	ci right 8.388633e-01	k: 854912	n:1020000
KS ci ratio: 1.318613e-01	ci left: 8.085957e-04	ci right 9.236808e-04	k: 882	n:1020000
TRIOBP   1020000 perm   814 sec   (1253 perm/sec)   p_kst 8.647059e-04   p_cons 8.381490e-01   p_joint 5.110784e-03

Joint ci ratio: 5.116752e-02	ci left: 5.521011e-03	ci right 5.811876e-03	k: 5835	n:1030000
Cons ci ratio: 1.697394e-03	ci left: 8.374251e-01	ci right 8.388487e-01	k: 863282	n:1030000
KS ci ratio: 1.309741e-01	ci left: 8.120129e-04	ci right 9.267462e-04	k: 894	n:1030000
TRIOBP   1030000 perm   826 sec   (1246 perm/sec)   p_kst 8.679612e-04   p_cons 8.381379e-01   p_joint 5.665049e-03

Joint ci ratio: 4.231414e-02	ci left: 8.011395e-03	ci right 8.358661e-03	k: 8511	n:1040000
Cons ci ratio: 1.621238e-03	ci left: 8.482854e-01	ci right 8.496627e-01	k: 882934	n:1040000
KS ci ratio: 1.303205e-01	ci left: 8.125761e-04	ci right 9.267717e-04	k: 903	n:1040000
TRIOBP   1040000 perm   840 sec   (1238 perm/sec)   p_kst 8.682692e-04   p_cons 8.489750e-01   p_joint 8.183654e-03

Joint ci ratio: 4.205507e-02	ci left: 8.034043e-03	ci right 8.380107e-03	k: 8616	n:1050000
Cons ci ratio: 1.613528e-03	ci left: 8.482841e-01	ci right 8.496549e-01	k: 891419	n:1050000
KS ci ratio: 1.293226e-01	ci left: 8.177377e-04	ci right 9.317113e-04	k: 917	n:1050000
TRIOBP   1050000 perm   853 sec   (1232 perm/sec)   p_kst 8.733333e-04   p_cons 8.489705e-01   p_joint 8.205714e-03

Joint ci ratio: 4.189769e-02	ci left: 8.018926e-03	ci right 8.363015e-03	k: 8681	n:1060000
Cons ci ratio: 1.605549e-03	ci left: 8.483434e-01	ci right 8.497075e-01	k: 899968	n:1060000
KS ci ratio: 1.284854e-01	ci left: 8.209790e-04	ci right 9.346070e-04	k: 929	n:1060000
TRIOBP   1060000 perm   865 sec   (1225 perm/sec)   p_kst 8.764151e-04   p_cons 8.490264e-01   p_joint 8.189623e-03

Joint ci ratio: 4.194561e-02	ci left: 7.926404e-03	ci right 8.266921e-03	k: 8662	n:1070000
Cons ci ratio: 1.597739e-03	ci left: 8.483932e-01	ci right 8.497507e-01	k: 908508	n:1070000
KS ci ratio: 1.275964e-01	ci left: 8.250668e-04	ci right 9.384107e-04	k: 942	n:1070000
TRIOBP   1070000 perm   879 sec   (1218 perm/sec)   p_kst 8.803738e-04   p_cons 8.490729e-01   p_joint 8.095327e-03

Joint ci ratio: 4.626382e-02	ci left: 6.450896e-03	ci right 6.757314e-03	k: 7131	n:1080000
Cons ci ratio: 1.525071e-03	ci left: 8.588432e-01	ci right 8.601549e-01	k: 928260	n:1080000
KS ci ratio: 1.270587e-01	ci left: 8.245987e-04	ci right 9.373650e-04	k: 950	n:1080000
TRIOBP   1080000 perm   891 sec   (1212 perm/sec)   p_kst 8.796296e-04   p_cons 8.595000e-01   p_joint 6.602778e-03

Joint ci ratio: 4.601906e-02	ci left: 6.460635e-03	ci right 6.765849e-03	k: 7207	n:1090000
Cons ci ratio: 1.518388e-03	ci left: 8.587938e-01	ci right 8.600997e-01	k: 936798	n:1090000
KS ci ratio: 1.267262e-01	ci left: 8.214751e-04	ci right 9.334981e-04	k: 955	n:1090000
TRIOBP   1090000 perm   906 sec   (1203 perm/sec)   p_kst 8.761468e-04   p_cons 8.594477e-01   p_joint 6.611927e-03

Joint ci ratio: 4.580664e-02	ci left: 6.462112e-03	ci right 6.765950e-03	k: 7274	n:1100000
Cons ci ratio: 1.511422e-03	ci left: 8.588046e-01	ci right 8.601044e-01	k: 945401	n:1100000
KS ci ratio: 1.261993e-01	ci left: 8.210497e-04	ci right 9.325145e-04	k: 963	n:1100000
TRIOBP   1100000 perm   920 sec   (1196 perm/sec)   p_kst 8.754545e-04   p_cons 8.594555e-01   p_joint 6.612727e-03

Joint ci ratio: 4.555656e-02	ci left: 6.475144e-03	ci right 6.777889e-03	k: 7354	n:1110000
Cons ci ratio: 1.505145e-03	ci left: 8.587195e-01	ci right 8.600138e-01	k: 953898	n:1110000
KS ci ratio: 1.256789e-01	ci left: 8.206330e-04	ci right 9.315476e-04	k: 971	n:1110000
TRIOBP   1110000 perm   934 sec   (1189 perm/sec)   p_kst 8.747748e-04   p_cons 8.593676e-01   p_joint 6.625225e-03

Joint ci ratio: 4.535353e-02	ci left: 6.475589e-03	ci right 6.776971e-03	k: 7420	n:1120000
Cons ci ratio: 1.498647e-03	ci left: 8.586842e-01	ci right 8.599729e-01	k: 962449	n:1120000
KS ci ratio: 1.251011e-01	ci left: 8.210896e-04	ci right 9.315178e-04	k: 980	n:1120000
TRIOBP   1120000 perm   947 sec   (1183 perm/sec)   p_kst 8.750000e-04   p_cons 8.593295e-01   p_joint 6.625000e-03

Joint ci ratio: 4.578853e-02	ci left: 6.296663e-03	ci right 6.592601e-03	k: 7281	n:1130000
Cons ci ratio: 1.492079e-03	ci left: 8.586744e-01	ci right 8.599574e-01	k: 971028	n:1130000
KS ci ratio: 1.244682e-01	ci left: 8.223967e-04	ci right 9.323999e-04	k: 990	n:1130000
TRIOBP   1130000 perm   960 sec   (1178 perm/sec)   p_kst 8.761062e-04   p_cons 8.593168e-01   p_joint 6.443363e-03

Joint ci ratio: 4.592650e-02	ci left: 6.204135e-03	ci right 6.496627e-03	k: 7238	n:1140000
Cons ci ratio: 1.485791e-03	ci left: 8.586331e-01	ci right 8.599107e-01	k: 979571	n:1140000
KS ci ratio: 1.235980e-01	ci left: 8.270825e-04	ci right 9.368824e-04	k: 1004	n:1140000
TRIOBP   1140000 perm   972 sec   (1172 perm/sec)   p_kst 8.807018e-04   p_cons 8.592728e-01   p_joint 6.349123e-03

Joint ci ratio: 4.581961e-02	ci left: 6.179411e-03	ci right 6.470041e-03	k: 7272	n:1150000
Cons ci ratio: 1.479305e-03	ci left: 8.586379e-01	ci right 8.599099e-01	k: 988166	n:1150000
KS ci ratio: 1.229269e-01	ci left: 8.291608e-04	ci right 9.385955e-04	k: 1015	n:1150000
TRIOBP   1150000 perm   986 sec   (1167 perm/sec)   p_kst 8.826087e-04   p_cons 8.592748e-01   p_joint 6.323478e-03

Joint ci ratio: 4.641871e-02	ci left: 5.968481e-03	ci right 6.252959e-03	k: 7087	n:1160000
Cons ci ratio: 1.472866e-03	ci left: 8.586486e-01	ci right 8.599151e-01	k: 996768	n:1160000
KS ci ratio: 1.223861e-01	ci left: 8.295335e-04	ci right 9.385007e-04	k: 1024	n:1160000
TRIOBP   1160000 perm   999 sec   (1161 perm/sec)   p_kst 8.827586e-04   p_cons 8.592828e-01   p_joint 6.109483e-03

Joint ci ratio: 4.667904e-02	ci left: 5.851570e-03	ci right 6.132081e-03	k: 7009	n:1170000
Cons ci ratio: 1.466822e-03	ci left: 8.586078e-01	ci right 8.598690e-01	k: 1005310	n:1170000
KS ci ratio: 1.216757e-01	ci left: 8.323868e-04	ci right 9.410486e-04	k: 1036	n:1170000
TRIOBP   1170000 perm   1013 sec   (1155 perm/sec)   p_kst 8.854701e-04   p_cons 8.592393e-01   p_joint 5.990598e-03

Joint ci ratio: 4.668358e-02	ci left: 5.801139e-03	ci right 6.079260e-03	k: 7008	n:1180000
Cons ci ratio: 1.460467e-03	ci left: 8.586314e-01	ci right 8.598872e-01	k: 1013927	n:1180000
KS ci ratio: 1.212091e-01	ci left: 8.319064e-04	ci right 9.400591e-04	k: 1044	n:1180000
TRIOBP   1180000 perm   1028 sec   (1148 perm/sec)   p_kst 8.847458e-04   p_cons 8.592602e-01   p_joint 5.938983e-03

Joint ci ratio: 4.661790e-02	ci left: 5.768999e-03	ci right 6.045179e-03	k: 7028	n:1190000
Cons ci ratio: 1.454402e-03	ci left: 8.586201e-01	ci right 8.598706e-01	k: 1022503	n:1190000
KS ci ratio: 1.209204e-01	ci left: 8.289900e-04	ci right 9.364884e-04	k: 1049	n:1190000
TRIOBP   1190000 perm   1041 sec   (1143 perm/sec)   p_kst 8.815126e-04   p_cons 8.592462e-01   p_joint 5.905882e-03

Joint ci ratio: 4.638399e-02	ci left: 5.779403e-03	ci right 6.054657e-03	k: 7099	n:1200000
Cons ci ratio: 1.448201e-03	ci left: 8.586440e-01	ci right 8.598892e-01	k: 1031121	n:1200000
KS ci ratio: 1.204624e-01	ci left: 8.285471e-04	ci right 9.355522e-04	k: 1057	n:1200000
TRIOBP   1200000 perm   1056 sec   (1137 perm/sec)   p_kst 8.808333e-04   p_cons 8.592675e-01   p_joint 5.915833e-03

Joint ci ratio: 4.493722e-02	ci left: 6.109122e-03	ci right 6.390770e-03	k: 7561	n:1210000
Cons ci ratio: 1.442198e-03	ci left: 8.586477e-01	ci right 8.598878e-01	k: 1039715	n:1210000
KS ci ratio: 1.201789e-01	ci left: 8.257074e-04	ci right 9.320770e-04	k: 1062	n:1210000
TRIOBP   1210000 perm   1069 sec   (1132 perm/sec)   p_kst 8.776860e-04   p_cons 8.592686e-01   p_joint 6.248760e-03

Joint ci ratio: 4.474233e-02	ci left: 6.112539e-03	ci right 6.393091e-03	k: 7627	n:1220000
Cons ci ratio: 1.436123e-03	ci left: 8.586760e-01	ci right 8.599108e-01	k: 1048339	n:1220000
KS ci ratio: 1.199537e-01	ci left: 8.221194e-04	ci right 9.278142e-04	k: 1066	n:1220000
TRIOBP   1220000 perm   1082 sec   (1127 perm/sec)   p_kst 8.737705e-04   p_cons 8.592943e-01   p_joint 6.251639e-03

Joint ci ratio: 4.501745e-02	ci left: 5.988878e-03	ci right 6.265488e-03	k: 7535	n:1230000
Cons ci ratio: 1.430263e-03	ci left: 8.586802e-01	ci right 8.599100e-01	k: 1056934	n:1230000
KS ci ratio: 1.195066e-01	ci left: 8.217448e-04	ci right 9.269698e-04	k: 1074	n:1230000
TRIOBP   1230000 perm   1097 sec   (1122 perm/sec)   p_kst 8.731707e-04   p_cons 8.592959e-01   p_joint 6.126016e-03

Joint ci ratio: 4.520605e-02	ci left: 5.891138e-03	ci right 6.164403e-03	k: 7473	n:1240000
Cons ci ratio: 1.424508e-03	ci left: 8.586787e-01	ci right 8.599035e-01	k: 1065522	n:1240000
KS ci ratio: 1.189545e-01	ci left: 8.229419e-04	ci right 9.277991e-04	k: 1084	n:1240000
TRIOBP   1240000 perm   1110 sec   (1117 perm/sec)   p_kst 8.741935e-04   p_cons 8.592919e-01   p_joint 6.026613e-03

Joint ci ratio: 4.505277e-02	ci left: 5.884348e-03	ci right 6.156348e-03	k: 7524	n:1250000
Cons ci ratio: 1.418606e-03	ci left: 8.587141e-01	ci right 8.599339e-01	k: 1074156	n:1250000
KS ci ratio: 1.184100e-01	ci left: 8.241209e-04	ci right 9.286141e-04	k: 1094	n:1250000
TRIOBP   1250000 perm   1124 sec   (1112 perm/sec)   p_kst 8.752000e-04   p_cons 8.593248e-01   p_joint 6.019200e-03

Joint ci ratio: 4.489805e-02	ci left: 5.878452e-03	ci right 6.149223e-03	k: 7576	n:1260000
Cons ci ratio: 1.412938e-03	ci left: 8.587211e-01	ci right 8.599360e-01	k: 1082755	n:1260000
KS ci ratio: 1.181408e-01	ci left: 8.214310e-04	ci right 9.253298e-04	k: 1099	n:1260000
TRIOBP   1260000 perm   1139 sec   (1106 perm/sec)   p_kst 8.722222e-04   p_cons 8.593294e-01   p_joint 6.012698e-03

Joint ci ratio: 4.525194e-02	ci left: 5.741068e-03	ci right 6.007649e-03	k: 7459	n:1270000
Cons ci ratio: 1.407352e-03	ci left: 8.587256e-01	ci right 8.599357e-01	k: 1091351	n:1270000
KS ci ratio: 1.176074e-01	ci left: 8.226049e-04	ci right 9.261498e-04	k: 1109	n:1270000
TRIOBP   1270000 perm   1155 sec   (1099 perm/sec)   p_kst 8.732283e-04   p_cons 8.593315e-01   p_joint 5.873228e-03

Joint ci ratio: 4.506199e-02	ci left: 5.744880e-03	ci right 6.010489e-03	k: 7522	n:1280000
Cons ci ratio: 1.401936e-03	ci left: 8.587121e-01	ci right 8.599175e-01	k: 1099924	n:1280000
KS ci ratio: 1.170811e-01	ci left: 8.237616e-04	ci right 9.269559e-04	k: 1119	n:1280000
TRIOBP   1280000 perm   1170 sec   (1094 perm/sec)   p_kst 8.742187e-04   p_cons 8.593156e-01   p_joint 5.876562e-03

Joint ci ratio: 4.485360e-02	ci left: 5.754000e-03	ci right 6.018769e-03	k: 7592	n:1290000
Cons ci ratio: 1.396761e-03	ci left: 8.586677e-01	ci right 8.598687e-01	k: 1108457	n:1290000
KS ci ratio: 1.166135e-01	ci left: 8.241486e-04	ci right 9.269508e-04	k: 1128	n:1290000
TRIOBP   1290000 perm   1186 sec   (1088 perm/sec)   p_kst 8.744186e-04   p_cons 8.592690e-01   p_joint 5.885271e-03

Joint ci ratio: 4.507308e-02	ci left: 5.654209e-03	ci right 5.915692e-03	k: 7519	n:1300000
Cons ci ratio: 1.391545e-03	ci left: 8.586410e-01	ci right 8.598374e-01	k: 1117012	n:1300000
KS ci ratio: 1.161514e-01	ci left: 8.245306e-04	ci right 9.269449e-04	k: 1137	n:1300000
TRIOBP   1300000 perm   1200 sec   (1083 perm/sec)   p_kst 8.746154e-04   p_cons 8.592400e-01   p_joint 5.783846e-03

Joint ci ratio: 4.522555e-02	ci left: 5.573305e-03	ci right 5.831941e-03	k: 7469	n:1310000
Cons ci ratio: 1.386322e-03	ci left: 8.586262e-01	ci right 8.598181e-01	k: 1125582	n:1310000
KS ci ratio: 1.156948e-01	ci left: 8.249075e-04	ci right 9.269383e-04	k: 1146	n:1310000
TRIOBP   1310000 perm   1216 sec   (1077 perm/sec)   p_kst 8.748092e-04   p_cons 8.592229e-01   p_joint 5.701527e-03

Joint ci ratio: 4.504796e-02	ci left: 5.575276e-03	ci right 5.832961e-03	k: 7528	n:1320000
Cons ci ratio: 1.380958e-03	ci left: 8.586465e-01	ci right 8.598338e-01	k: 1134198	n:1320000
KS ci ratio: 1.153435e-01	ci left: 8.238080e-04	ci right 9.253723e-04	k: 1153	n:1320000
TRIOBP   1320000 perm   1230 sec   (1073 perm/sec)   p_kst 8.734848e-04   p_cons 8.592409e-01   p_joint 5.703030e-03

Joint ci ratio: 4.486651e-02	ci left: 5.578706e-03	ci right 5.835484e-03	k: 7589	n:1330000
Cons ci ratio: 1.375831e-03	ci left: 8.586356e-01	ci right 8.598185e-01	k: 1142773	n:1330000
KS ci ratio: 1.147483e-01	ci left: 8.263769e-04	ci right 9.276966e-04	k: 1165	n:1330000
TRIOBP   1330000 perm   1247 sec   (1067 perm/sec)   p_kst 8.759398e-04   p_cons 8.592278e-01   p_joint 5.706015e-03

Joint ci ratio: 4.524368e-02	ci left: 5.444832e-03	ci right 5.697610e-03	k: 7464	n:1340000
Cons ci ratio: 1.371090e-03	ci left: 8.585666e-01	ci right 8.597453e-01	k: 1151270	n:1340000
KS ci ratio: 1.141622e-01	ci left: 8.289088e-04	ci right 9.299849e-04	k: 1177	n:1340000
TRIOBP   1340000 perm   1261 sec   (1062 perm/sec)   p_kst 8.783582e-04   p_cons 8.591567e-01   p_joint 5.570149e-03

Joint ci ratio: 4.640590e-02	ci left: 5.135744e-03	ci right 5.380460e-03	k: 7097	n:1350000
Cons ci ratio: 1.365696e-03	ci left: 8.586233e-01	ci right 8.597974e-01	k: 1159935	n:1350000
KS ci ratio: 1.138727e-01	ci left: 8.270864e-04	ci right 9.276673e-04	k: 1183	n:1350000
TRIOBP   1350000 perm   1277 sec   (1057 perm/sec)   p_kst 8.762963e-04   p_cons 8.592111e-01   p_joint 5.257037e-03

Joint ci ratio: 4.677253e-02	ci left: 5.018034e-03	ci right 5.259081e-03	k: 6987	n:1360000
Cons ci ratio: 1.360505e-03	ci left: 8.586541e-01	ci right 8.598238e-01	k: 1168566	n:1360000
KS ci ratio: 1.131579e-01	ci left: 8.317213e-04	ci right 9.321886e-04	k: 1198	n:1360000
TRIOBP   1360000 perm   1294 sec   (1051 perm/sec)   p_kst 8.808824e-04   p_cons 8.592397e-01   p_joint 5.137500e-03

Joint ci ratio: 4.660944e-02	ci left: 5.016755e-03	ci right 5.256878e-03	k: 7036	n:1370000
Cons ci ratio: 1.355249e-03	ci left: 8.587064e-01	ci right 8.598717e-01	k: 1177227	n:1370000
KS ci ratio: 1.127355e-01	ci left: 8.320341e-04	ci right 9.321391e-04	k: 1207	n:1370000
TRIOBP   1370000 perm   1310 sec   (1046 perm/sec)   p_kst 8.810219e-04   p_cons 8.592898e-01   p_joint 5.135766e-03

Joint ci ratio: 4.668706e-02	ci left: 4.963926e-03	ci right 5.201927e-03	k: 7013	n:1380000
Cons ci ratio: 1.350326e-03	ci left: 8.587093e-01	ci right 8.598703e-01	k: 1185821	n:1380000
KS ci ratio: 1.120877e-01	ci left: 8.358646e-04	ci right 9.358144e-04	k: 1221	n:1380000
TRIOBP   1380000 perm   1327 sec   (1040 perm/sec)   p_kst 8.847826e-04   p_cons 8.592906e-01   p_joint 5.081884e-03

Joint ci ratio: 4.650171e-02	ci left: 4.968033e-03	ci right 5.205260e-03	k: 7069	n:1390000
Cons ci ratio: 1.345507e-03	ci left: 8.587028e-01	ci right 8.598597e-01	k: 1194402	n:1390000
KS ci ratio: 1.112708e-01	ci left: 8.424393e-04	ci right 9.423930e-04	k: 1239	n:1390000
TRIOBP   1390000 perm   1343 sec   (1035 perm/sec)   p_kst 8.913669e-04   p_cons 8.592820e-01   p_joint 5.085612e-03

Joint ci ratio: 4.635452e-02	ci left: 4.964316e-03	ci right 5.200595e-03	k: 7114	n:1400000
Cons ci ratio: 1.340673e-03	ci left: 8.587086e-01	ci right 8.598613e-01	k: 1203000	n:1400000
KS ci ratio: 1.108248e-01	ci left: 8.433663e-04	ci right 9.430027e-04	k: 1249	n:1400000
TRIOBP   1400000 perm   1359 sec   (1030 perm/sec)   p_kst 8.921429e-04   p_cons 8.592857e-01   p_joint 5.081429e-03

Joint ci ratio: 4.620547e-02	ci left: 4.961355e-03	ci right 5.196713e-03	k: 7160	n:1410000
Cons ci ratio: 1.336129e-03	ci left: 8.586710e-01	ci right 8.598197e-01	k: 1211537	n:1410000
KS ci ratio: 1.103403e-01	ci left: 8.449707e-04	ci right 9.443318e-04	k: 1260	n:1410000
TRIOBP   1410000 perm   1377 sec   (1024 perm/sec)   p_kst 8.936170e-04   p_cons 8.592461e-01   p_joint 5.078014e-03

Joint ci ratio: 4.619982e-02	ci left: 4.927806e-03	ci right 5.161544e-03	k: 7162	n:1420000
Cons ci ratio: 1.331333e-03	ci left: 8.586882e-01	ci right 8.598329e-01	k: 1220151	n:1420000
KS ci ratio: 1.099486e-01	ci left: 8.451836e-04	ci right 9.441942e-04	k: 1269	n:1420000
TRIOBP   1420000 perm   1392 sec   (1020 perm/sec)   p_kst 8.936620e-04   p_cons 8.592613e-01   p_joint 5.043662e-03

Joint ci ratio: 4.608440e-02	ci left: 4.918230e-03	ci right 5.150915e-03	k: 7198	n:1430000
Cons ci ratio: 1.326722e-03	ci left: 8.586807e-01	ci right 8.598214e-01	k: 1228730	n:1430000
KS ci ratio: 1.092622e-01	ci left: 8.501555e-04	ci right 9.490867e-04	k: 1285	n:1430000
TRIOBP   1430000 perm   1410 sec   (1014 perm/sec)   p_kst 8.986014e-04   p_cons 8.592517e-01   p_joint 5.033566e-03

Joint ci ratio: 4.589021e-02	ci left: 4.925950e-03	ci right 5.157992e-03	k: 7259	n:1440000
Cons ci ratio: 1.322200e-03	ci left: 8.586656e-01	ci right 8.598024e-01	k: 1237298	n:1440000
KS ci ratio: 1.089240e-01	ci left: 8.496556e-04	ci right 9.482029e-04	k: 1293	n:1440000
TRIOBP   1440000 perm   1427 sec   (1009 perm/sec)   p_kst 8.979167e-04   p_cons 8.592347e-01   p_joint 5.040972e-03

Joint ci ratio: 4.598980e-02	ci left: 4.870841e-03	ci right 5.100798e-03	k: 7228	n:1450000
Cons ci ratio: 1.317649e-03	ci left: 8.586646e-01	ci right 8.597974e-01	k: 1245886	n:1450000
KS ci ratio: 1.085889e-01	ci left: 8.491630e-04	ci right 9.473309e-04	k: 1301	n:1450000
TRIOBP   1450000 perm   1443 sec   (1005 perm/sec)   p_kst 8.972414e-04   p_cons 8.592317e-01   p_joint 4.984828e-03

Joint ci ratio: 4.433802e-02	ci left: 5.207249e-03	ci right 5.444035e-03	k: 7774	n:1460000
Cons ci ratio: 1.313353e-03	ci left: 8.586252e-01	ci right 8.597542e-01	k: 1254418	n:1460000
KS ci ratio: 1.083811e-01	ci left: 8.466785e-04	ci right 9.443599e-04	k: 1306	n:1460000
TRIOBP   1460000 perm   1459 sec   (1001 perm/sec)   p_kst 8.945205e-04   p_cons 8.591904e-01   p_joint 5.324658e-03

Joint ci ratio: 4.418767e-02	ci left: 5.207481e-03	ci right 5.443454e-03	k: 7827	n:1470000
Cons ci ratio: 1.308709e-03	ci left: 8.586585e-01	ci right 8.597836e-01	k: 1263056	n:1470000
KS ci ratio: 1.080099e-01	ci left: 8.468756e-04	ci right 9.442238e-04	k: 1315	n:1470000
TRIOBP   1470000 perm   1476 sec   (996 perm/sec)   p_kst 8.945578e-04   p_cons 8.592218e-01   p_joint 5.324490e-03

Joint ci ratio: 4.414597e-02	ci left: 5.182317e-03	ci right 5.416922e-03	k: 7842	n:1480000
Cons ci ratio: 1.304233e-03	ci left: 8.586691e-01	ci right 8.597903e-01	k: 1271661	n:1480000
KS ci ratio: 1.077238e-01	ci left: 8.457555e-04	ci right 9.427012e-04	k: 1322	n:1480000
TRIOBP   1480000 perm   1492 sec   (992 perm/sec)   p_kst 8.932432e-04   p_cons 8.592304e-01   p_joint 5.298649e-03

Joint ci ratio: 4.476193e-02	ci left: 5.006162e-03	ci right 5.236036e-03	k: 7629	n:1490000
Cons ci ratio: 1.299648e-03	ci left: 8.587084e-01	ci right 8.598258e-01	k: 1280309	n:1490000
KS ci ratio: 1.075210e-01	ci left: 8.433446e-04	ci right 9.398204e-04	k: 1327	n:1490000
TRIOBP   1490000 perm   1508 sec   (988 perm/sec)   p_kst 8.906040e-04   p_cons 8.592678e-01   p_joint 5.120134e-03

Joint ci ratio: 4.460141e-02	ci left: 5.009045e-03	ci right 5.238205e-03	k: 7684	n:1500000
Cons ci ratio: 1.295293e-03	ci left: 8.587131e-01	ci right 8.598268e-01	k: 1288906	n:1500000
KS ci ratio: 1.071184e-01	ci left: 8.442101e-04	ci right 9.404004e-04	k: 1337	n:1500000
TRIOBP   1500000 perm   1524 sec   (984 perm/sec)   p_kst 8.913333e-04   p_cons 8.592707e-01   p_joint 5.122667e-03

Joint ci ratio: 4.444261e-02	ci left: 5.011891e-03	ci right 5.240344e-03	k: 7739	n:1510000
Cons ci ratio: 1.290873e-03	ci left: 8.587384e-01	ci right 8.598483e-01	k: 1297534	n:1510000
KS ci ratio: 1.066411e-01	ci left: 8.463539e-04	ci right 9.423320e-04	k: 1349	n:1510000
TRIOBP   1510000 perm   1540 sec   (981 perm/sec)   p_kst 8.933775e-04   p_cons 8.592940e-01   p_joint 5.125166e-03

Joint ci ratio: 4.427692e-02	ci left: 5.016653e-03	ci right 5.244449e-03	k: 7797	n:1520000
Cons ci ratio: 1.286651e-03	ci left: 8.587344e-01	ci right 8.598406e-01	k: 1306118	n:1520000
KS ci ratio: 1.063266e-01	ci left: 8.459088e-04	ci right 9.415357e-04	k: 1357	n:1520000
TRIOBP   1520000 perm   1557 sec   (976 perm/sec)   p_kst 8.927632e-04   p_cons 8.592882e-01   p_joint 5.129605e-03

Joint ci ratio: 4.463871e-02	ci left: 4.903067e-03	ci right 5.127571e-03	k: 7672	n:1530000
Cons ci ratio: 1.282508e-03	ci left: 8.587232e-01	ci right 8.598258e-01	k: 1314691	n:1530000
KS ci ratio: 1.059760e-01	ci left: 8.461062e-04	ci right 9.414203e-04	k: 1366	n:1530000
TRIOBP   1530000 perm   1575 sec   (971 perm/sec)   p_kst 8.928105e-04   p_cons 8.592752e-01   p_joint 5.014379e-03

Joint ci ratio: 4.478632e-02	ci left: 4.839121e-03	ci right 5.061448e-03	k: 7622	n:1540000
Cons ci ratio: 1.278195e-03	ci left: 8.587518e-01	ci right 8.598508e-01	k: 1323325	n:1540000
KS ci ratio: 1.054755e-01	ci left: 8.488304e-04	ci right 9.439718e-04	k: 1379	n:1540000
TRIOBP   1540000 perm   1593 sec   (967 perm/sec)   p_kst 8.954545e-04   p_cons 8.593019e-01   p_joint 4.949351e-03

Joint ci ratio: 4.222961e-02	ci left: 5.411622e-03	ci right 5.645715e-03	k: 8568	n:1550000
Cons ci ratio: 1.274004e-03	ci left: 8.587652e-01	ci right 8.598606e-01	k: 1331936	n:1550000
KS ci ratio: 1.050954e-01	ci left: 8.496358e-04	ci right 9.445031e-04	k: 1389	n:1550000
TRIOBP   1550000 perm   1610 sec   (963 perm/sec)   p_kst 8.961290e-04   p_cons 8.593135e-01   p_joint 5.527742e-03

Joint ci ratio: 4.292856e-02	ci left: 5.202515e-03	ci right 5.431379e-03	k: 8293	n:1560000
Cons ci ratio: 1.269935e-03	ci left: 8.587630e-01	ci right 8.598549e-01	k: 1340523	n:1560000
KS ci ratio: 1.047568e-01	ci left: 8.498072e-04	ci right 9.443692e-04	k: 1398	n:1560000
TRIOBP   1560000 perm   1626 sec   (959 perm/sec)   p_kst 8.961538e-04   p_cons 8.593096e-01   p_joint 5.316026e-03

Joint ci ratio: 4.301279e-02	ci left: 5.149211e-03	ci right 5.376186e-03	k: 8261	n:1570000
Cons ci ratio: 1.265911e-03	ci left: 8.587596e-01	ci right 8.598480e-01	k: 1349108	n:1570000
KS ci ratio: 1.045702e-01	ci left: 8.474957e-04	ci right 9.416222e-04	k: 1403	n:1570000
TRIOBP   1570000 perm   1643 sec   (956 perm/sec)   p_kst 8.936306e-04   p_cons 8.593045e-01   p_joint 5.261783e-03

Joint ci ratio: 4.351942e-02	ci left: 4.997661e-03	ci right 5.220615e-03	k: 8071	n:1580000
Cons ci ratio: 1.261760e-03	ci left: 8.587879e-01	ci right 8.598728e-01	k: 1357743	n:1580000
KS ci ratio: 1.043476e-01	ci left: 8.458301e-04	ci right 9.395592e-04	k: 1409	n:1580000
TRIOBP   1580000 perm   1662 sec   (951 perm/sec)   p_kst 8.917722e-04   p_cons 8.593310e-01   p_joint 5.108228e-03

Joint ci ratio: 4.085550e-02	ci left: 5.638975e-03	ci right 5.874780e-03	k: 9152	n:1590000
Cons ci ratio: 1.257856e-03	ci left: 8.587762e-01	ci right 8.598577e-01	k: 1366315	n:1590000
KS ci ratio: 1.039429e-01	ci left: 8.472484e-04	ci right 9.407484e-04	k: 1420	n:1590000
TRIOBP   1590000 perm   1679 sec   (947 perm/sec)   p_kst 8.930818e-04   p_cons 8.593176e-01   p_joint 5.755975e-03

Joint ci ratio: 4.091698e-02	ci left: 5.587026e-03	ci right 5.821018e-03	k: 9125	n:1600000
Cons ci ratio: 1.253699e-03	ci left: 8.588204e-01	ci right 8.598983e-01	k: 1374976	n:1600000
KS ci ratio: 1.035790e-01	ci left: 8.480410e-04	ci right 9.412808e-04	k: 1430	n:1600000
TRIOBP   1600000 perm   1697 sec   (943 perm/sec)   p_kst 8.937500e-04   p_cons 8.593600e-01   p_joint 5.703125e-03

Joint ci ratio: 4.129252e-02	ci left: 5.451500e-03	ci right 5.681961e-03	k: 8961	n:1610000
Cons ci ratio: 1.249660e-03	ci left: 8.588490e-01	ci right 8.599236e-01	k: 1383613	n:1610000
KS ci ratio: 1.033627e-01	ci left: 8.464039e-04	ci right 9.392575e-04	k: 1436	n:1610000
TRIOBP   1610000 perm   1717 sec   (938 perm/sec)   p_kst 8.919255e-04   p_cons 8.593870e-01   p_joint 5.565839e-03

Joint ci ratio: 4.115493e-02	ci left: 5.454504e-03	ci right 5.684306e-03	k: 9021	n:1620000
Cons ci ratio: 1.245956e-03	ci left: 8.588199e-01	ci right 8.598912e-01	k: 1392157	n:1620000
KS ci ratio: 1.031476e-01	ci left: 8.447872e-04	ci right 9.372590e-04	k: 1442	n:1620000
TRIOBP   1620000 perm   1736 sec   (933 perm/sec)   p_kst 8.901235e-04   p_cons 8.593562e-01   p_joint 5.568519e-03

Joint ci ratio: 4.099601e-02	ci left: 5.463545e-03	ci right 5.692818e-03	k: 9091	n:1630000
Cons ci ratio: 1.242152e-03	ci left: 8.588169e-01	ci right 8.598849e-01	k: 1400743	n:1630000
KS ci ratio: 1.025451e-01	ci left: 8.497657e-04	ci right 9.422065e-04	k: 1459	n:1630000
TRIOBP   1630000 perm   1755 sec   (929 perm/sec)   p_kst 8.950920e-04   p_cons 8.593515e-01   p_joint 5.577301e-03

Joint ci ratio: 4.136663e-02	ci left: 5.333064e-03	ci right 5.558932e-03	k: 8930	n:1640000
Cons ci ratio: 1.238420e-03	ci left: 8.588066e-01	ci right 8.598714e-01	k: 1409317	n:1640000
KS ci ratio: 1.020915e-01	ci left: 8.523083e-04	ci right 9.445908e-04	k: 1472	n:1640000
TRIOBP   1640000 perm   1776 sec   (924 perm/sec)   p_kst 8.975610e-04   p_cons 8.593396e-01   p_joint 5.445122e-03

Joint ci ratio: 4.149363e-02	ci left: 5.268350e-03	ci right 5.492179e-03	k: 8876	n:1650000
Cons ci ratio: 1.234743e-03	ci left: 8.587922e-01	ci right 8.598538e-01	k: 1417884	n:1650000
KS ci ratio: 1.018843e-01	ci left: 8.506863e-04	ci right 9.425952e-04	k: 1478	n:1650000
TRIOBP   1650000 perm   1796 sec   (919 perm/sec)   p_kst 8.957576e-04   p_cons 8.593236e-01   p_joint 5.379394e-03

Joint ci ratio: 4.136799e-02	ci left: 5.268806e-03	ci right 5.491961e-03	k: 8930	n:1660000
Cons ci ratio: 1.231111e-03	ci left: 8.587756e-01	ci right 8.598340e-01	k: 1426447	n:1660000
KS ci ratio: 1.015074e-01	ci left: 8.520197e-04	ci right 9.437118e-04	k: 1489	n:1660000
TRIOBP   1660000 perm   1815 sec   (915 perm/sec)   p_kst 8.969880e-04   p_cons 8.593054e-01   p_joint 5.379518e-03

Joint ci ratio: 4.029405e-02	ci left: 5.521762e-03	ci right 5.749419e-03	k: 9410	n:1670000
Cons ci ratio: 1.227396e-03	ci left: 8.587819e-01	ci right 8.598372e-01	k: 1435048	n:1670000
KS ci ratio: 1.010337e-01	ci left: 8.550888e-04	ci right 9.466563e-04	k: 1503	n:1670000
TRIOBP   1670000 perm   1834 sec   (910 perm/sec)   p_kst 9.000000e-04   p_cons 8.593102e-01   p_joint 5.634731e-03

Joint ci ratio: 4.020247e-02	ci left: 5.514232e-03	ci right 5.741049e-03	k: 9453	n:1680000
Cons ci ratio: 1.223879e-03	ci left: 8.587554e-01	ci right 8.598076e-01	k: 1443594	n:1680000
KS ci ratio: 1.007995e-01	ci left: 8.540604e-04	ci right 9.452932e-04	k: 1510	n:1680000
TRIOBP   1680000 perm   1852 sec   (907 perm/sec)   p_kst 8.988095e-04   p_cons 8.592821e-01   p_joint 5.626786e-03

Joint ci ratio: 4.015618e-02	ci left: 5.494489e-03	ci right 5.720228e-03	k: 9475	n:1690000
Cons ci ratio: 1.220261e-03	ci left: 8.587553e-01	ci right 8.598044e-01	k: 1452184	n:1690000
KS ci ratio: 1.006000e-01	ci left: 8.524677e-04	ci right 9.433395e-04	k: 1516	n:1690000
TRIOBP   1690000 perm   1873 sec   (902 perm/sec)   p_kst 8.970414e-04   p_cons 8.592805e-01   p_joint 5.606509e-03

Joint ci ratio: 3.923080e-02	ci left: 5.724261e-03	ci right 5.953898e-03	k: 9925	n:1700000
Cons ci ratio: 1.216483e-03	ci left: 8.587935e-01	ci right 8.598394e-01	k: 1460839	n:1700000
KS ci ratio: 1.002372e-01	ci left: 8.537613e-04	ci right 9.444235e-04	k: 1527	n:1700000
TRIOBP   1700000 perm   1893 sec   (898 perm/sec)   p_kst 8.982353e-04   p_cons 8.593171e-01   p_joint 5.838235e-03

Joint ci ratio: 3.950867e-02	ci left: 5.610872e-03	ci right 5.837591e-03	k: 9787	n:1710000
Cons ci ratio: 1.213053e-03	ci left: 8.587686e-01	ci right 8.598115e-01	k: 1469387	n:1710000
KS ci ratio: 9.984583e-02	ci left: 8.556105e-04	ci right 9.460935e-04	k: 1539	n:1710000
TRIOBP   1710000 perm   1911 sec   (895 perm/sec)   p_kst 9.000000e-04   p_cons 8.592906e-01   p_joint 5.723392e-03

Outputting figure to mutsig2_images.part000000000182/TRIOBP.4_7484_1710000_0.0009_0.85929_0.0057234.png
                gene_name: TRIOBP
               theta_stop: 0.100 
                    nperm: 1710000 
                     p_ks: 0.00090 
        ci_ks_bounds_left: 0.00086 
       ci_ks_bounds_right: 0.00095 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.0057 
     ci_joint_bounds_left: 0.0056 
    ci_joint_bounds_right: 0.0058 

Current progress: 50 percent done.
TRPM6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.647702e-02	ci left: 2.493471e-01	ci right 2.665941e-01	k: 2579	n:10000
Cons ci ratio: 4.961818e-02	ci left: 3.746515e-01	ci right 3.938160e-01	k: 3842	n:10000
KS ci ratio: 7.340334e-02	ci left: 2.136891e-01	ci right 2.300732e-01	k: 2218	n:10000
TRPM6   10000 perm   3 sec   (3854 perm/sec)   p_kst 2.218000e-01   p_cons 3.842000e-01   p_joint 2.579000e-01

Outputting figure to mutsig2_images.part000000000182/TRPM6.2_6269_10000_0.2218_0.3842_0.2579.png
                gene_name: TRPM6
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000182
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 182 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1646>
Subject: Job 9878293: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1646>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000183> was used as the working directory.
Started at Fri Oct  5 23:01:20 2012
Results reported at Fri Oct  5 23:02:54 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000183.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000183.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 183  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000183.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     93.24 sec.
    Max Memory :      1136 MB
    Max Swap   :      3902 MB

    Max Processes  :         7
    Max Threads    :        55

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
183
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 183
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 183: processing genes 16503 - 16593
Calculating significance of each gene.
Using projection method.
16503	TSGA10IP	1
16504	TSGA13	1
16505	TSGA14	1
16506	TSHB	1
16507	TSHR	7.264987e-02
16508	TSHZ1	1
16509	TSHZ2	1.934747e-01
16510	TSHZ3	2.695773e-01
16511	TSKS	1
16512	TSKU	1
16513	TSLP	1
16514	TSN	1
16515	TSNARE1	1
16516	TSNAX	1
16517	TSNAXIP1	1
16518	TSPAN1	1
16519	TSPAN10	1
16520	TSPAN11	1
16521	TSPAN12	1
16522	TSPAN13	1
16523	TSPAN14	1
16524	TSPAN15	1
16525	TSPAN16	3.677304e-02
16526	TSPAN17	1
16527	TSPAN18	1
16528	TSPAN19	1
16529	TSPAN2	6.808501e-02
16530	TSPAN3	1
16531	TSPAN31	1
16532	TSPAN32	1
16533	TSPAN33	3.670448e-02
16534	TSPAN4	1
16535	TSPAN5	1
16536	TSPAN6	1
16537	TSPAN7	7.978620e-02
16538	TSPAN8	1
16539	TSPAN9	1
16540	TSPO	1
16541	TSPO2	1
16542	TSPY1	1
16543	TSPY2	1
16544	TSPYL1	1
16545	TSPYL2	1
16546	TSPYL4	1
16547	TSPYL5	1
16548	TSPYL6	1
16549	TSR1	1
16550	TSR2	1
16551	TSSC1	1
16552	TSSC4	1
16553	TSSK1B	1
16554	TSSK2	6.458120e-02
16555	TSSK3	1
16556	TSSK4	1
16557	TSSK6	1
16558	TST	1
16559	TSTA3	1.240041e-01
16560	TSTD2	1
16561	TTBK1	1.152097e-01
16562	TTBK2	3.559517e-01
16563	TTC1	1
16564	TTC12	1
16565	TTC13	1
16566	TTC14	1
16567	TTC15	1
16568	TTC16	1
16569	TTC17	1
16570	TTC18	1.421623e-01
16571	TTC19	1
16572	TTC21A	1
16573	TTC21B	1
16574	TTC22	1
16575	TTC23	1
16576	TTC23L	1
16577	TTC24	1
16578	TTC25	1
16579	TTC26	1
16580	TTC27	1
16581	TTC29	7.498657e-02
16582	TTC3	1
16583	TTC30A	9.223859e-02
16584	TTC30B	1.780242e-01
16585	TTC31	1
16586	TTC32	1
16587	TTC33	1
16588	TTC35	1
16589	TTC36	1
16590	TTC37	3.461428e-01
16591	TTC38	1
16592	TTC39A	1
16593	TTC39B	1
Done

Running MutSig 2:
Scatter job 183: processing genes 16503 - 16593
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000183
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 183 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1645>
Subject: Job 9878304: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1645>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000184> was used as the working directory.
Started at Fri Oct  5 23:01:20 2012
Results reported at Fri Oct  5 23:06:35 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000184.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000184.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 184  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000184.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    324.52 sec.
    Max Memory :      2161 MB
    Max Swap   :      4929 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
184
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 184
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 184: processing genes 16594 - 16683
Calculating significance of each gene.
Using projection method.
16594	TTC39C	6.558958e-02
16595	TTC4	7.307816e-02
16596	TTC5	1
16597	TTC7A	1
16598	TTC7B	1
16599	TTC8	1
16600	TTC9	1
16601	TTC9B	1
16602	TTC9C	1
16603	TTF1	1
16604	TTF2	1
16605	TTK	1
16606	TTL	1
16607	TTLL1	1
16608	TTLL10	1
16609	TTLL11	1.055241e-04
16610	TTLL12	1
16611	TTLL13	1
16612	TTLL2	9.471582e-02
16613	TTLL3	2.413509e-01
16614	TTLL4	1
16615	TTLL5	1
16616	TTLL6	1
16617	TTLL7	1
16618	TTLL8	1
16619	TTLL9	1
In gene TTN the following bins exceed PROBCAP:
    PRAD-EJ-5511	categ 6	N = 110039  n = 1	mu =   2.34e-07
16620	TTN	6.741909e-01
16621	TTPA	1
16622	TTPAL	1
16623	TTR	1
16624	TTYH1	1
16625	TTYH2	1
16626	TTYH3	9.282914e-02
16627	TUB	1
16628	TUBA1A	1
16629	TUBA1B	1
16630	TUBA1C	1
16631	TUBA3C	8.131243e-03
16632	TUBA3D	1
16633	TUBA3E	1
16634	TUBA4A	1
16635	TUBA8	1
16636	TUBAL3	1
16637	TUBB	1
16638	TUBB1	1.240678e-01
16639	TUBB2A	1
16640	TUBB2B	1.054173e-01
16641	TUBB2C	1
16642	TUBB3	1
16643	TUBB4	1
16644	TUBB4Q	7.555731e-02
16645	TUBB6	1
16646	TUBB8	9.880153e-02
16647	TUBD1	2.003218e-02
16648	TUBE1	1
16649	TUBG1	1
16650	TUBG2	1
16651	TUBGCP2	1
16652	TUBGCP3	2.658262e-01
16653	TUBGCP4	1.599919e-01
16654	TUBGCP5	1
16655	TUBGCP6	4.907081e-01
16656	TUFM	1
16657	TUFT1	1
16658	TULP1	1
16659	TULP2	1
16660	TULP3	1
16661	TULP4	1
16662	TUSC2	1
16663	TUSC3	1
16664	TUSC5	7.622946e-03
16665	TUT1	1
16666	TWF1	8.471439e-02
16667	TWF2	1
16668	TWIST1	1
16669	TWISTNB	1
16670	TWSG1	1
16671	TXK	1.786982e-01
16672	TXLNA	1.420461e-01
16673	TXLNB	1
16674	TXLNG	9.107473e-02
16675	TXN	1
16676	TXN2	3.114130e-02
16677	TXNDC11	7.577651e-02
16678	TXNDC12	1
16679	TXNDC15	1
16680	TXNDC16	1
16681	TXNDC17	1
16682	TXNDC2	1
16683	TXNDC3	1
Done

Running MutSig 2:
Scatter job 184: processing genes 16594 - 16683
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TTN
Processing conservation and coverage...
8% 17% 26% 35% 44% 53% 62% 71% 80% 89% 98% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.992891e-02	ci left: 6.221590e-01	ci right 6.411643e-01	k: 6317	n:10000
Cons ci ratio: 6.163475e-02	ci left: 2.790384e-01	ci right 2.968853e-01	k: 2879	n:10000
KS ci ratio: 3.365594e-02	ci left: 5.658420e-01	ci right 5.853140e-01	k: 5756	n:10000
TTN   10000 perm   18 sec   (569 perm/sec)   p_kst 5.756000e-01   p_cons 2.879000e-01   p_joint 6.317000e-01

Outputting figure to mutsig2_images.part000000000184/TTN.18_111433_10000_0.5756_0.2879_0.6317.png
                gene_name: TTN
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 33 percent done.
TTLL11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.069242e-02	ci left: 6.103023e-01	ci right 6.294278e-01	k: 6199	n:10000
Cons ci ratio: 2.191363e-02	ci left: 7.534265e-01	ci right 7.702207e-01	k: 7619	n:10000
KS ci ratio: 4.499582e-02	ci left: 4.216640e-01	ci right 4.411760e-01	k: 4314	n:10000
TTLL11   10000 perm   2 sec   (5061 perm/sec)   p_kst 4.314000e-01   p_cons 7.619000e-01   p_joint 6.199000e-01

Outputting figure to mutsig2_images.part000000000184/TTLL11.3_2517_10000_0.4314_0.7619_0.6199.png
                gene_name: TTLL11
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 67 percent done.
TUBA3C
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000184
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 184 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1708>
Subject: Job 9878324: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1708>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000185> was used as the working directory.
Started at Fri Oct  5 23:01:54 2012
Results reported at Fri Oct  5 23:03:39 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000185.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000185.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 185  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000185.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    112.99 sec.
    Max Memory :      1947 MB
    Max Swap   :      4714 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
185
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 185
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 185: processing genes 16684 - 16774
Calculating significance of each gene.
Using projection method.
16684	TXNDC5	1
16685	TXNDC6	1
16686	TXNDC8	1
16687	TXNDC9	1
16688	TXNIP	1.241049e-01
16689	TXNL1	1
16690	TXNL4A	1
16691	TXNL4B	1
16692	TXNRD1	1
16693	TXNRD2	1
16694	TXNRD3IT1	1
16695	TYK2	1.133458e-01
16696	TYMP	1
16697	TYMS	1
16698	TYR	1
16699	TYRO3	1.507498e-01
16700	TYROBP	1
16701	TYRP1	1
16702	TYSND1	1
16703	TYW1	1.475889e-01
16704	TYW1B	1
16705	TYW3	1
16706	U2AF1	6.249112e-03
16707	U2AF1L4	1
16708	U2AF2	1
16709	UACA	2.917456e-01
16710	UAP1	1
16711	UAP1L1	1
16712	UBA1	1
16713	UBA2	1
16714	UBA3	1
16715	UBA5	1
16716	UBA52	1
16717	UBA6	1.337766e-01
16718	UBA7	1
16719	UBAC1	1.382868e-01
16720	UBAC2	1
16721	UBAP1	1
16722	UBAP2	1
16723	UBAP2L	1
16724	UBASH3A	1
16725	UBASH3B	1
16726	UBB	5.531737e-02
16727	UBC	1
16728	UBD	1
16729	UBE2A	1
16730	UBE2B	1
16731	UBE2C	1
16732	UBE2CBP	1
16733	UBE2D1	1
16734	UBE2D2	1
16735	UBE2D3	1
16736	UBE2D4	1
16737	UBE2E1	1
16738	UBE2E2	1
16739	UBE2E3	1
16740	UBE2F	1
16741	UBE2G1	1
16742	UBE2G2	1
16743	UBE2H	1
16744	UBE2I	1
16745	UBE2J1	1
16746	UBE2J2	1
16747	UBE2K	1
16748	UBE2L3	1
16749	UBE2L6	1
16750	UBE2M	1
16751	UBE2N	1
16752	UBE2NL	1
16753	UBE2O	1
16754	UBE2Q1	1
16755	UBE2Q2	1
16756	UBE2R2	1
16757	UBE2S	1
16758	UBE2T	1
16759	UBE2U	1
16760	UBE2V1	1
16761	UBE2V2	1
16762	UBE2W	1
16763	UBE2Z	1
16764	UBE3A	1
16765	UBE3B	1
16766	UBE3C	1
16767	UBE4A	1
16768	UBE4B	1
16769	UBFD1	1
16770	UBIAD1	1
16771	UBL3	1
16772	UBL4A	1
16773	UBL4B	1
16774	UBL5	1
Done

Running MutSig 2:
Scatter job 185: processing genes 16684 - 16774
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
U2AF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.036364e-02	ci left: 4.754599e-01	ci right 4.951487e-01	k: 4853	n:10000
Cons ci ratio: 7.365934e-02	ci left: 2.125053e-01	ci right 2.288578e-01	k: 2206	n:10000
KS ci ratio: 3.289572e-01	ci left: 1.169777e-02	ci right 1.639161e-02	k: 139	n:10000
U2AF1   10000 perm   1 sec   (6764 perm/sec)   p_kst 1.390000e-02   p_cons 2.206000e-01   p_joint 4.853000e-01

Joint ci ratio: 2.346530e-02	ci left: 5.756289e-01	ci right 5.893471e-01	k: 11650	n:20000
Cons ci ratio: 5.147988e-02	ci left: 2.189308e-01	ci right 2.305493e-01	k: 4494	n:20000
KS ci ratio: 2.364985e-01	ci left: 1.194666e-02	ci right 1.519704e-02	k: 270	n:20000
U2AF1   20000 perm   5 sec   (3870 perm/sec)   p_kst 1.350000e-02   p_cons 2.247000e-01   p_joint 5.825000e-01

Joint ci ratio: 1.908366e-02	ci left: 5.788320e-01	ci right 5.900183e-01	k: 17533	n:30000
Cons ci ratio: 4.183924e-02	ci left: 2.216081e-01	ci right 2.311116e-01	k: 6790	n:30000
KS ci ratio: 1.954299e-01	ci left: 1.193916e-02	ci right 1.455637e-02	k: 396	n:30000
U2AF1   30000 perm   7 sec   (4262 perm/sec)   p_kst 1.320000e-02   p_cons 2.263333e-01   p_joint 5.844333e-01

Joint ci ratio: 1.667924e-02	ci left: 5.751200e-01	ci right 5.848184e-01	k: 23199	n:40000
Cons ci ratio: 3.596107e-02	ci left: 2.248895e-01	ci right 2.331499e-01	k: 9160	n:40000
KS ci ratio: 1.688175e-01	ci left: 1.217635e-02	ci right 1.444512e-02	k: 531	n:40000
U2AF1   40000 perm   9 sec   (4453 perm/sec)   p_kst 1.327500e-02   p_cons 2.290000e-01   p_joint 5.799750e-01

Joint ci ratio: 3.076498e-03	ci left: 9.686106e-01	ci right 9.716145e-01	k: 48507	n:50000
Cons ci ratio: 3.204347e-02	ci left: 2.266551e-01	ci right 2.340562e-01	k: 11517	n:50000
KS ci ratio: 1.511105e-01	ci left: 1.227572e-02	ci right 1.430138e-02	k: 663	n:50000
U2AF1   50000 perm   11 sec   (4555 perm/sec)   p_kst 1.326000e-02   p_cons 2.303400e-01   p_joint 9.701400e-01

Joint ci ratio: 1.366275e-02	ci left: 5.744367e-01	ci right 5.823557e-01	k: 34704	n:60000
Cons ci ratio: 2.932270e-02	ci left: 2.261235e-01	ci right 2.328693e-01	k: 13769	n:60000
KS ci ratio: 1.376648e-01	ci left: 1.241474e-02	ci right 1.426611e-02	k: 799	n:60000
U2AF1   60000 perm   13 sec   (4598 perm/sec)   p_kst 1.331667e-02   p_cons 2.294833e-01   p_joint 5.784000e-01

Joint ci ratio: 1.265818e-02	ci left: 5.743883e-01	ci right 5.817196e-01	k: 40464	n:70000
Cons ci ratio: 2.718270e-02	ci left: 2.259198e-01	ci right 2.321598e-01	k: 16032	n:70000
KS ci ratio: 1.294592e-01	ci left: 1.209098e-02	ci right 1.377832e-02	k: 904	n:70000
U2AF1   70000 perm   15 sec   (4601 perm/sec)   p_kst 1.291429e-02   p_cons 2.290286e-01   p_joint 5.780571e-01

Joint ci ratio: 2.442491e-03	ci left: 9.686798e-01	ci right 9.710609e-01	k: 77591	n:80000
Cons ci ratio: 2.540500e-02	ci left: 2.264279e-01	ci right 2.322668e-01	k: 18347	n:80000
KS ci ratio: 1.206431e-01	ci left: 1.223864e-02	ci right 1.382197e-02	k: 1041	n:80000
U2AF1   80000 perm   17 sec   (4579 perm/sec)   p_kst 1.301250e-02   p_cons 2.293375e-01   p_joint 9.698875e-01

Joint ci ratio: 2.306639e-03	ci left: 9.686498e-01	ci right 9.708976e-01	k: 87281	n:90000
Cons ci ratio: 2.395395e-02	ci left: 2.265678e-01	ci right 2.320719e-01	k: 20638	n:90000
KS ci ratio: 1.136086e-01	ci left: 1.231332e-02	ci right 1.380719e-02	k: 1174	n:90000
U2AF1   90000 perm   20 sec   (4548 perm/sec)   p_kst 1.304444e-02   p_cons 2.293111e-01   p_joint 9.697889e-01

Joint ci ratio: 2.191551e-03	ci left: 9.686189e-01	ci right 9.707538e-01	k: 96970	n:100000
Cons ci ratio: 2.276093e-02	ci left: 2.261496e-01	ci right 2.313662e-01	k: 22875	n:100000
KS ci ratio: 1.077600e-01	ci left: 1.235575e-02	ci right 1.377270e-02	k: 1305	n:100000
U2AF1   100000 perm   22 sec   (4508 perm/sec)   p_kst 1.305000e-02   p_cons 2.287500e-01   p_joint 9.697000e-01

Joint ci ratio: 2.080793e-03	ci left: 9.689195e-01	ci right 9.709466e-01	k: 106694	n:110000
Cons ci ratio: 2.174854e-02	ci left: 2.255143e-01	ci right 2.304819e-01	k: 25079	n:110000
KS ci ratio: 1.029487e-01	ci left: 1.233892e-02	ci right 1.368693e-02	k: 1430	n:110000
U2AF1   110000 perm   25 sec   (4459 perm/sec)   p_kst 1.300000e-02   p_cons 2.279909e-01   p_joint 9.699455e-01

Joint ci ratio: 1.987471e-03	ci left: 9.691039e-01	ci right 9.710400e-01	k: 116410	n:120000
Cons ci ratio: 2.082413e-02	ci left: 2.255955e-01	ci right 2.303510e-01	k: 27356	n:120000
KS ci ratio: 9.895491e-02	ci left: 1.226917e-02	ci right 1.355453e-02	k: 1548	n:120000
U2AF1   120000 perm   27 sec   (4407 perm/sec)   p_kst 1.290000e-02   p_cons 2.279667e-01   p_joint 9.700833e-01

Outputting figure to mutsig2_images.part000000000185/U2AF1.2_826_120000_0.0129_0.22797_0.97008.png
                gene_name: U2AF1
               theta_stop: 0.099 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000185
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 185 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1701>
Subject: Job 9878331: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1701>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000186> was used as the working directory.
Started at Fri Oct  5 23:01:54 2012
Results reported at Fri Oct  5 23:04:38 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000186.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000186.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 186  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000186.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    169.07 sec.
    Max Memory :      1928 MB
    Max Swap   :      4638 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
186
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 186
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 186: processing genes 16775 - 16865
Calculating significance of each gene.
Using projection method.
16775	UBL7	1
16776	UBLCP1	1
16777	UBN1	1
16778	UBN2	1
16779	UBOX5	1
16780	UBP1	1
16781	UBQLN1	9.493271e-02
16782	UBQLN2	8.567551e-02
16783	UBQLN3	1
16784	UBQLN4	1
16785	UBQLNL	1.443444e-01
16786	UBR1	1.615947e-01
16787	UBR2	2.075222e-01
16788	UBR3	7.461886e-02
In gene UBR4 the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 15782   n = 1	mu =   9.08e-07
16789	UBR4	8.347474e-01
16790	UBR5	1
16791	UBR7	1
16792	UBTD1	1
16793	UBTD2	1
16794	UBTF	5.967239e-02
16795	UBTFL1	1
16796	UBXN1	1
16797	UBXN10	1
16798	UBXN11	1
16799	UBXN2A	1
16800	UBXN2B	1
16801	UBXN4	1
16802	UBXN6	1
16803	UBXN7	1
16804	UBXN8	1
16805	UCHL1	1
16806	UCHL3	1
16807	UCHL5	1
16808	UCK1	1
16809	UCK2	1
16810	UCKL1	1
16811	UCMA	1
16812	UCN	1
16813	UCN2	1
16814	UCN3	1
16815	UCP1	1
16816	UCP2	1
16817	UCP3	1
16818	UEVLD	1
16819	UFC1	1
16820	UFD1L	1
16821	UFM1	1
16822	UFSP1	1
16823	UFSP2	1
16824	UGCG	1
16825	UGDH	1
16826	UGGT1	1
16827	UGGT2	1.788579e-01
16828	UGP2	9.271231e-02
16829	UGT1A1	1
16830	UGT1A10	1
16831	UGT1A3	1
16832	UGT1A4	1
16833	UGT1A5	1
16834	UGT1A6	1
16835	UGT1A7	1
16836	UGT1A8	1.163932e-01
16837	UGT1A9	1
16838	UGT2A1	1.881178e-02
16839	UGT2A2	1
16840	UGT2A3	1
In gene UGT2B10 the following bins exceed PROBCAP:
    PRAD-CH-5772	categ 6	N = 3193    n = 1	mu =   3.94e-07
16841	UGT2B10	3.748957e-03
16842	UGT2B11	1
16843	UGT2B15	1
16844	UGT2B17	1
16845	UGT2B28	1
16846	UGT2B4	1
16847	UGT2B7	1
16848	UGT3A1	1
16849	UGT3A2	1
16850	UGT8	1
16851	UHMK1	1
16852	UHRF1	2.126703e-01
16853	UHRF1BP1	1
16854	UHRF1BP1L	1
16855	UHRF2	1
16856	UIMC1	1.946080e-01
16857	ULBP1	1
16858	ULBP2	1
16859	ULBP3	1
16860	ULK1	1
16861	ULK2	1
16862	ULK3	1
16863	ULK4	5.682020e-03
16864	UMOD	1
16865	UMODL1	1
Done

Running MutSig 2:
Scatter job 186: processing genes 16775 - 16865
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
UGT2B10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.035655e-01	ci left: 1.390981e-02	ci right 1.897755e-02	k: 163	n:10000
Cons ci ratio: 5.694681e-02	ci left: 3.122498e-01	ci right 3.306543e-01	k: 3214	n:10000
KS ci ratio: 4.922911e-01	ci left: 4.756711e-03	ci right 7.941167e-03	k: 62	n:10000
UGT2B10   10000 perm   2 sec   (4633 perm/sec)   p_kst 6.200000e-03   p_cons 3.214000e-01   p_joint 1.630000e-02

Joint ci ratio: 1.103976e-01	ci left: 5.601725e-02	ci right 6.261160e-02	k: 1185	n:20000
Cons ci ratio: 4.035537e-02	ci left: 3.140339e-01	ci right 3.270183e-01	k: 6410	n:20000
KS ci ratio: 3.210197e-01	ci left: 6.213270e-03	ci right 8.633254e-03	k: 147	n:20000
UGT2B10   20000 perm   7 sec   (2737 perm/sec)   p_kst 7.350000e-03   p_cons 3.205000e-01   p_joint 5.925000e-02

Joint ci ratio: 1.481641e-01	ci left: 2.110848e-02	ci right 2.451814e-02	k: 683	n:30000
Cons ci ratio: 3.196351e-02	ci left: 3.285630e-01	ci right 3.392692e-01	k: 10017	n:30000
KS ci ratio: 2.663777e-01	ci left: 6.212330e-03	ci right 8.151619e-03	k: 214	n:30000
UGT2B10   30000 perm   10 sec   (3034 perm/sec)   p_kst 7.133333e-03   p_cons 3.339000e-01   p_joint 2.276667e-02

Joint ci ratio: 1.304528e-01	ci left: 2.063321e-02	ci right 2.353675e-02	k: 882	n:40000
Cons ci ratio: 2.772378e-02	ci left: 3.286054e-01	ci right 3.378688e-01	k: 13329	n:40000
KS ci ratio: 2.266127e-01	ci left: 6.583529e-03	ci right 8.289151e-03	k: 296	n:40000
UGT2B10   40000 perm   12 sec   (3208 perm/sec)   p_kst 7.400000e-03   p_cons 3.332250e-01   p_joint 2.205000e-02

Joint ci ratio: 1.604273e-01	ci left: 1.085271e-02	ci right 1.276460e-02	k: 589	n:50000
Cons ci ratio: 2.473176e-02	ci left: 3.302644e-01	ci right 3.385548e-01	k: 16720	n:50000
KS ci ratio: 2.016654e-01	ci left: 6.743468e-03	ci right 8.274545e-03	k: 374	n:50000
UGT2B10   50000 perm   15 sec   (3232 perm/sec)   p_kst 7.480000e-03   p_cons 3.344000e-01   p_joint 1.178000e-02

Joint ci ratio: 1.109887e-01	ci left: 1.923514e-02	ci right 2.151158e-02	k: 1221	n:60000
Cons ci ratio: 2.320327e-02	ci left: 3.185940e-01	ci right 3.260899e-01	k: 19340	n:60000
KS ci ratio: 1.843012e-01	ci left: 6.793417e-03	ci right 8.188191e-03	k: 448	n:60000
UGT2B10   60000 perm   18 sec   (3291 perm/sec)   p_kst 7.466667e-03   p_cons 3.223333e-01   p_joint 2.035000e-02

Joint ci ratio: 9.601654e-02	ci left: 2.213932e-02	ci right 2.438615e-02	k: 1627	n:70000
Cons ci ratio: 2.142563e-02	ci left: 3.200205e-01	ci right 3.269656e-01	k: 22644	n:70000
KS ci ratio: 1.717624e-01	ci left: 6.751096e-03	ci right 8.033104e-03	k: 516	n:70000
UGT2B10   70000 perm   21 sec   (3340 perm/sec)   p_kst 7.371429e-03   p_cons 3.234857e-01   p_joint 2.324286e-02

Joint ci ratio: 9.634077e-02	ci left: 1.929733e-02	ci right 2.126268e-02	k: 1621	n:80000
Cons ci ratio: 1.999843e-02	ci left: 3.211935e-01	ci right 3.276942e-01	k: 25955	n:80000
KS ci ratio: 1.603764e-01	ci left: 6.817779e-03	ci right 8.018359e-03	k: 592	n:80000
UGT2B10   80000 perm   24 sec   (3378 perm/sec)   p_kst 7.400000e-03   p_cons 3.244375e-01   p_joint 2.026250e-02

Joint ci ratio: 9.363930e-02	ci left: 1.820487e-02	ci right 2.000409e-02	k: 1718	n:90000
Cons ci ratio: 1.883536e-02	ci left: 3.218293e-01	ci right 3.279598e-01	k: 29240	n:90000
KS ci ratio: 1.520245e-01	ci left: 6.775596e-03	ci right 7.900953e-03	k: 659	n:90000
UGT2B10   90000 perm   27 sec   (3389 perm/sec)   p_kst 7.322222e-03   p_cons 3.248889e-01   p_joint 1.908889e-02

Joint ci ratio: 9.074155e-02	ci left: 1.748803e-02	ci right 1.916007e-02	k: 1831	n:100000
Cons ci ratio: 1.782976e-02	ci left: 3.229452e-01	ci right 3.287649e-01	k: 32585	n:100000
KS ci ratio: 1.441571e-01	ci left: 6.810638e-03	ci right 7.878237e-03	k: 733	n:100000
UGT2B10   100000 perm   30 sec   (3380 perm/sec)   p_kst 7.330000e-03   p_cons 3.258500e-01   p_joint 1.831000e-02

Joint ci ratio: 8.763726e-02	ci left: 1.708018e-02	ci right 1.865448e-02	k: 1964	n:110000
Cons ci ratio: 1.701254e-02	ci left: 3.227583e-01	ci right 3.283054e-01	k: 35808	n:110000
KS ci ratio: 1.375687e-01	ci left: 6.822976e-03	ci right 7.839623e-03	k: 805	n:110000
UGT2B10   110000 perm   32 sec   (3385 perm/sec)   p_kst 7.318182e-03   p_cons 3.255273e-01   p_joint 1.785455e-02

Joint ci ratio: 7.379362e-02	ci left: 2.212650e-02	ci right 2.382999e-02	k: 2756	n:120000
Cons ci ratio: 1.627232e-02	ci left: 3.233063e-01	ci right 3.286187e-01	k: 39115	n:120000
KS ci ratio: 1.321117e-01	ci left: 6.801944e-03	ci right 7.772096e-03	k: 873	n:120000
UGT2B10   120000 perm   36 sec   (3369 perm/sec)   p_kst 7.275000e-03   p_cons 3.259583e-01   p_joint 2.296667e-02

Joint ci ratio: 7.313195e-02	ci left: 2.083170e-02	ci right 2.242050e-02	k: 2810	n:130000
Cons ci ratio: 1.562181e-02	ci left: 3.237514e-01	ci right 3.288564e-01	k: 42419	n:130000
KS ci ratio: 1.268501e-01	ci left: 6.829520e-03	ci right 7.761891e-03	k: 947	n:130000
UGT2B10   130000 perm   39 sec   (3360 perm/sec)   p_kst 7.284615e-03   p_cons 3.263000e-01   p_joint 2.161538e-02

Joint ci ratio: 7.363195e-02	ci left: 1.911171e-02	ci right 2.057970e-02	k: 2777	n:140000
Cons ci ratio: 1.505382e-02	ci left: 3.238369e-01	ci right 3.287560e-01	k: 45681	n:140000
KS ci ratio: 1.227775e-01	ci left: 6.784558e-03	ci right 7.678890e-03	k: 1011	n:140000
UGT2B10   140000 perm   42 sec   (3342 perm/sec)   p_kst 7.221429e-03   p_cons 3.262929e-01   p_joint 1.983571e-02

Joint ci ratio: 7.178294e-02	ci left: 1.879312e-02	ci right 2.019888e-02	k: 2923	n:150000
Cons ci ratio: 1.454977e-02	ci left: 3.237277e-01	ci right 3.284790e-01	k: 48915	n:150000
KS ci ratio: 1.185201e-01	ci left: 6.810706e-03	ci right 7.675172e-03	k: 1085	n:150000
UGT2B10   150000 perm   46 sec   (3293 perm/sec)   p_kst 7.233333e-03   p_cons 3.261000e-01   p_joint 1.948667e-02

Joint ci ratio: 6.711670e-02	ci left: 2.017390e-02	ci right 2.158104e-02	k: 3339	n:160000
Cons ci ratio: 1.409318e-02	ci left: 3.236346e-01	ci right 3.282342e-01	k: 52149	n:160000
KS ci ratio: 1.146768e-01	ci left: 6.834054e-03	ci right 7.671450e-03	k: 1159	n:160000
UGT2B10   160000 perm   49 sec   (3262 perm/sec)   p_kst 7.243750e-03   p_cons 3.259313e-01   p_joint 2.086875e-02

Joint ci ratio: 6.678245e-02	ci left: 1.920088e-02	ci right 2.053321e-02	k: 3376	n:170000
Cons ci ratio: 1.367887e-02	ci left: 3.234958e-01	ci right 3.279572e-01	k: 55373	n:170000
KS ci ratio: 1.109585e-01	ci left: 6.883654e-03	ci right 7.697990e-03	k: 1238	n:170000
UGT2B10   170000 perm   52 sec   (3238 perm/sec)   p_kst 7.282353e-03   p_cons 3.257235e-01   p_joint 1.985882e-02

Joint ci ratio: 6.243909e-02	ci left: 2.075829e-02	ci right 2.210163e-02	k: 3856	n:180000
Cons ci ratio: 1.328697e-02	ci left: 3.237736e-01	ci right 3.281098e-01	k: 58669	n:180000
KS ci ratio: 1.089199e-01	ci left: 6.755135e-03	ci right 7.538642e-03	k: 1285	n:180000
UGT2B10   180000 perm   56 sec   (3194 perm/sec)   p_kst 7.138889e-03   p_cons 3.259389e-01   p_joint 2.142222e-02

Joint ci ratio: 5.978538e-02	ci left: 2.146439e-02	ci right 2.279235e-02	k: 4203	n:190000
Cons ci ratio: 1.293017e-02	ci left: 3.239133e-01	ci right 3.281341e-01	k: 61944	n:190000
KS ci ratio: 1.063089e-01	ci left: 6.727372e-03	ci right 7.487783e-03	k: 1349	n:190000
UGT2B10   190000 perm   60 sec   (3160 perm/sec)   p_kst 7.100000e-03   p_cons 3.260211e-01   p_joint 2.212105e-02

Joint ci ratio: 5.897917e-02	ci left: 2.097225e-02	ci right 2.225167e-02	k: 4321	n:200000
Cons ci ratio: 1.259121e-02	ci left: 3.243700e-01	ci right 3.284850e-01	k: 65285	n:200000
KS ci ratio: 1.036926e-01	ci left: 6.726943e-03	ci right 7.467451e-03	k: 1418	n:200000
UGT2B10   200000 perm   64 sec   (3138 perm/sec)   p_kst 7.090000e-03   p_cons 3.264250e-01   p_joint 2.160500e-02

Joint ci ratio: 5.772768e-02	ci left: 2.086510e-02	ci right 2.211006e-02	k: 4511	n:210000
Cons ci ratio: 1.228886e-02	ci left: 3.243803e-01	ci right 3.283959e-01	k: 68541	n:210000
KS ci ratio: 1.011919e-01	ci left: 6.736047e-03	ci right 7.458611e-03	k: 1489	n:210000
UGT2B10   210000 perm   68 sec   (3109 perm/sec)   p_kst 7.090476e-03   p_cons 3.263857e-01   p_joint 2.148095e-02

Joint ci ratio: 5.845472e-02	ci left: 1.944593e-02	ci right 2.062131e-02	k: 4406	n:220000
Cons ci ratio: 1.201140e-02	ci left: 3.242410e-01	ci right 3.281636e-01	k: 71764	n:220000
KS ci ratio: 9.902367e-02	ci left: 6.722350e-03	ci right 7.427095e-03	k: 1555	n:220000
UGT2B10   220000 perm   71 sec   (3080 perm/sec)   p_kst 7.068182e-03   p_cons 3.262000e-01   p_joint 2.002727e-02

Outputting figure to mutsig2_images.part000000000186/UGT2B10.4_3196_220000_0.0070682_0.3262_0.020027.png
                gene_name: UGT2B10
               theta_stop: 0.099 
                    nperm: 220000 
                     p_ks: 0.0071 
        ci_ks_bounds_left: 0.0067 
       ci_ks_bounds_right: 0.0074 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.021 

Current progress: 50 percent done.
ULK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.102156e-02	ci left: 2.251380e-01	ci right 2.418175e-01	k: 2334	n:10000
Cons ci ratio: 4.543874e-02	ci left: 4.168789e-01	ci right 4.363639e-01	k: 4266	n:10000
KS ci ratio: 1.178575e-01	ci left: 9.370045e-02	ci right 1.055340e-01	k: 995	n:10000
ULK4   10000 perm   2 sec   (4911 perm/sec)   p_kst 9.950000e-02   p_cons 4.266000e-01   p_joint 2.334000e-01

Joint ci ratio: 5.229848e-02	ci left: 2.135321e-01	ci right 2.250496e-01	k: 4385	n:20000
Cons ci ratio: 3.235393e-02	ci left: 4.163892e-01	ci right 4.301331e-01	k: 8465	n:20000
KS ci ratio: 8.285527e-02	ci left: 9.646450e-02	ci right 1.048520e-01	k: 2012	n:20000
ULK4   20000 perm   4 sec   (4549 perm/sec)   p_kst 1.006000e-01   p_cons 4.232500e-01   p_joint 2.192500e-01

Outputting figure to mutsig2_images.part000000000186/ULK4.4_3972_20000_0.1006_0.42325_0.21925.png
                gene_name: ULK4
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000186
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 186 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1724>
Subject: Job 9878337: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1724>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000187> was used as the working directory.
Started at Fri Oct  5 23:01:54 2012
Results reported at Fri Oct  5 23:03:15 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000187.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000187.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 187  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000187.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     73.22 sec.
    Max Memory :      2010 MB
    Max Swap   :      4616 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
187
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 187
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 187: processing genes 16866 - 16955
Calculating significance of each gene.
Using projection method.
16866	UMPS	1
16867	UNC119	1
16868	UNC119B	1
16869	UNC13A	3.440307e-01
16870	UNC13B	1
16871	UNC13C	5.173447e-01
16872	UNC13D	1
16873	UNC45A	1
16874	UNC45B	7.220453e-02
16875	UNC50	1
16876	UNC5A	1.951553e-01
16877	UNC5B	4.164587e-02
16878	UNC5C	1
16879	UNC5CL	1
16880	UNC5D	1
16881	UNC93A	1.700593e-01
16882	UNC93B1	1
16883	UNG	1
16884	UNK	1
16885	UNKL	1
16886	UPB1	1
16887	UPF1	1
16888	UPF2	1
16889	UPF3A	1
16890	UPF3B	1
16891	UPK1A	1
16892	UPK1B	1
16893	UPK2	1
16894	UPK3A	1
16895	UPK3B	1
16896	UPP1	1
16897	UPP2	1
16898	UPRT	1
16899	UQCC	1
16900	UQCR10	1
16901	UQCR11	1
16902	UQCRB	1
16903	UQCRC1	3.892471e-02
16904	UQCRC2	1
16905	UQCRFS1	1
16906	UQCRH	1
16907	UQCRHL	1
16908	UQCRQ	1
16909	URB2	1
16910	URGCP	1.014270e-01
16911	URM1	1
16912	UROC1	1
16913	UROD	1
16914	UROS	1
16915	USE1	1
16916	USF1	1
16917	USF2	1
16918	USH1C	1
16919	USH1G	1.471691e-01
16920	USH2A	2.960354e-01
16921	USHBP1	1.409139e-01
16922	USMG5	1
16923	USO1	1
16924	USP1	1
16925	USP10	1
16926	USP11	1
16927	USP12	1
16928	USP13	1
16929	USP14	1
16930	USP15	2.462174e-02
16931	USP16	5.075507e-02
16932	USP17L2	1
16933	USP18	1
16934	USP19	6.457578e-02
16935	USP2	1
16936	USP20	1
16937	USP21	1
16938	USP22	1
16939	USP24	1
16940	USP25	1
16941	USP26	1
16942	USP28	1.178614e-01
16943	USP29	9.725662e-02
16944	USP3	1
16945	USP30	1
16946	USP31	1.015464e-01
16947	USP32	1
16948	USP33	1
16949	USP34	3.833424e-01
16950	USP35	1.404348e-01
16951	USP36	1.747313e-01
16952	USP37	1
16953	USP38	6.466190e-02
16954	USP39	1
16955	USP4	1
Done

Running MutSig 2:
Scatter job 187: processing genes 16866 - 16955
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
UNC5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.265852e-02	ci left: 1.447212e-01	ci right 1.588823e-01	k: 1517	n:10000
Cons ci ratio: 1.251182e-02	ci left: 9.017548e-01	ci right 9.132066e-01	k: 9076	n:10000
KS ci ratio: 1.432065e-01	ci left: 6.468834e-02	ci right 7.476406e-02	k: 696	n:10000
UNC5B   10000 perm   2 sec   (6356 perm/sec)   p_kst 6.960000e-02   p_cons 9.076000e-01   p_joint 1.517000e-01

Joint ci ratio: 2.897557e-02	ci left: 4.708560e-01	ci right 4.847505e-01	k: 9556	n:20000
Cons ci ratio: 8.784959e-03	ci left: 9.046744e-01	ci right 9.127063e-01	k: 18175	n:20000
KS ci ratio: 1.019341e-01	ci left: 6.532996e-02	ci right 7.239601e-02	k: 1376	n:20000
UNC5B   20000 perm   5 sec   (3805 perm/sec)   p_kst 6.880000e-02   p_cons 9.087500e-01   p_joint 4.778000e-01

Joint ci ratio: 2.451829e-02	ci left: 4.543809e-01	ci right 4.656935e-01	k: 13801	n:30000
Cons ci ratio: 6.932836e-03	ci left: 9.110077e-01	ci right 9.173784e-01	k: 27427	n:30000
KS ci ratio: 8.339218e-02	ci left: 6.573218e-02	ci right 7.148503e-02	k: 2057	n:30000
UNC5B   30000 perm   7 sec   (4177 perm/sec)   p_kst 6.856667e-02   p_cons 9.142333e-01   p_joint 4.600333e-01

Outputting figure to mutsig2_images.part000000000187/UNC5B.2_2906_30000_0.068567_0.91423_0.46003.png
                gene_name: UNC5B
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.071 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 25 percent done.
USH2A
Processing conservation and coverage...
62% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.569007e-02	ci left: 5.368806e-01	ci right 5.564922e-01	k: 5467	n:10000
Cons ci ratio: 4.020242e-02	ci left: 4.774582e-01	ci right 4.971492e-01	k: 4873	n:10000
KS ci ratio: 1.946594e-02	ci left: 7.942551e-01	ci right 8.099685e-01	k: 8022	n:10000
USH2A   10000 perm   3 sec   (3584 perm/sec)   p_kst 8.022000e-01   p_cons 4.873000e-01   p_joint 5.467000e-01

Outputting figure to mutsig2_images.part000000000187/USH2A.2_15907_10000_0.8022_0.4873_0.5467.png
                gene_name: USH2A
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 50 percent done.
USP15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.737426e-02	ci left: 2.443046e-01	ci right 2.614396e-01	k: 2528	n:10000
KS ci ratio: 1.840456e-02	ci left: 8.117176e-01	ci right 8.268959e-01	k: 8194	n:10000
USP15   10000 perm   2 sec   (6136 perm/sec)   p_kst 8.194000e-01   p_cons 2.528000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000187/USP15.2_2943_10000_0.8194_0.2528_1.png
                gene_name: USP15
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
USP19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.434968e-02	ci left: 5.558170e-01	ci right 5.753448e-01	k: 5656	n:10000
Cons ci ratio: 4.199803e-02	ci left: 4.556848e-01	ci right 4.753353e-01	k: 4655	n:10000
KS ci ratio: 4.124628e-02	ci left: 4.646716e-01	ci right 4.843433e-01	k: 4745	n:10000
USP19   10000 perm   2 sec   (5552 perm/sec)   p_kst 4.745000e-01   p_cons 4.655000e-01   p_joint 5.656000e-01

Outputting figure to mutsig2_images.part000000000187/USP19.2_4057_10000_0.4745_0.4655_0.5656.png
                gene_name: USP19
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000187
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 187 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1702>
Subject: Job 9878346: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1702>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000188> was used as the working directory.
Started at Fri Oct  5 23:02:24 2012
Results reported at Fri Oct  5 23:03:52 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000188.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000188.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 188  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000188.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     97.17 sec.
    Max Memory :      1132 MB
    Max Swap   :      3922 MB

    Max Processes  :         7
    Max Threads    :        55

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
188
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 188
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 188: processing genes 16956 - 17046
Calculating significance of each gene.
Using projection method.
16956	USP40	1
16957	USP42	1
16958	USP43	1
16959	USP44	1
16960	USP45	1
16961	USP46	1
16962	USP47	1
16963	USP48	1.866618e-01
16964	USP49	1
16965	USP5	1
16966	USP50	1
16967	USP51	1
16968	USP53	1
16969	USP54	1
In gene USP6 the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 4337    n = 1	mu =   9.08e-07
16970	USP6	3.845544e-01
16971	USP6NL	2.508988e-01
16972	USP7	1
16973	USP8	2.331261e-01
16974	USP9X	1
16975	USP9Y	1
16976	USPL1	1
16977	UST	1
16978	UTP11L	1
16979	UTP14A	1
16980	UTP14C	1
16981	UTP15	1
16982	UTP18	1
16983	UTP20	1
16984	UTP23	1
16985	UTP3	4.476122e-03
16986	UTP6	1
16987	UTRN	1
16988	UTS2	1
16989	UTS2D	1
16990	UTS2R	1
16991	UTY	1
16992	UVRAG	1
16993	UXS1	1
16994	UXT	1
16995	VAC14	1
16996	VAMP1	1
16997	VAMP2	1
16998	VAMP3	1
16999	VAMP4	1
17000/18134 17000	VAMP5	1
17001	VAMP7	1
17002	VAMP8	1
17003	VANGL1	1
17004	VANGL2	1
17005	VAPA	1
17006	VAPB	1
17007	VARS	1.692935e-01
17008	VARS2	1
In gene VASH1 the following bins exceed PROBCAP:
    PRAD-CH-5766	categ 6	N = 832     n = 1	mu =   6.58e-08
17009	VASH1	8.642624e-03
17010	VASH2	1
17011	VASN	7.080275e-02
17012	VASP	1
17013	VAT1	1
17014	VAT1L	1
17015	VAV1	1
17016	VAV2	1
17017	VAV3	1
17018	VAX1	1
17019	VAX2	1
17020	VBP1	1
17021	VCAM1	1
17022	VCAN	3.899483e-01
17023	VCL	1
17024	VCP	1
17025	VCPIP1	1
17026	VCX	1
17027	VCX2	1
17028	VCX3A	1
17029	VCX3B	3.543486e-02
17030	VDAC1	1
17031	VDAC2	1
17032	VDAC3	1
17033	VDR	1
17034	VEGFA	1
17035	VEGFB	1
17036	VEGFC	5.274680e-02
17037	VENTX	1
17038	VEPH1	1
17039	VEZF1	7.540559e-02
17040	VEZT	1
17041	VGF	1.049301e-01
17042	VGLL1	1
17043	VGLL2	1
17044	VGLL3	1
17045	VGLL4	4.470444e-02
17046	VHL	1
Done

Running MutSig 2:
Scatter job 188: processing genes 16956 - 17046
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
UTP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.142503e-02	ci left: 2.804252e-01	ci right 2.982977e-01	k: 2893	n:10000
Cons ci ratio: 7.485738e-02	ci left: 2.070805e-01	ci right 2.232857e-01	k: 2151	n:10000
KS ci ratio: 1.370713e-02	ci left: 8.848302e-01	ci right 8.971410e-01	k: 8911	n:10000
UTP3   10000 perm   2 sec   (6097 perm/sec)   p_kst 8.911000e-01   p_cons 2.151000e-01   p_joint 2.893000e-01

Outputting figure to mutsig2_images.part000000000188/UTP3.2_1444_10000_0.8911_0.2151_0.2893.png
                gene_name: UTP3
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000188
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 188 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1706>
Subject: Job 9878355: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1706>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000189> was used as the working directory.
Started at Fri Oct  5 23:02:24 2012
Results reported at Fri Oct  5 23:04:13 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000189.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000189.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 189  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000189.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    117.53 sec.
    Max Memory :      2086 MB
    Max Swap   :      4694 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
189
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 189
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 189: processing genes 17047 - 17137
Calculating significance of each gene.
Using projection method.
17047	VHLL	1
17048	VIL1	1.791960e-01
17049	VILL	2.555859e-01
17050	VIM	1
17051	VIP	1
17052	VIPAR	9.728234e-02
17053	VIPR1	1
17054	VIPR2	1
17055	VIT	1
17056	VKORC1	1
17057	VKORC1L1	6.248381e-02
17058	VLDLR	1
17059	VMA21	1
17060	VMAC	1
17061	VMO1	1
17062	VN1R1	1
17063	VN1R2	1
17064	VN1R4	1
17065	VN1R5	1
17066	VNN1	1
17067	VNN2	1
17068	VOPP1	1
17069	VPRBP	1
17070	VPREB1	1
17071	VPREB3	1
17072	VPS11	1
17073	VPS13A	5.695321e-01
17074	VPS13B	2.619637e-01
17075	VPS13C	4.299667e-02
17076	VPS13D	4.482154e-01
17077	VPS16	1
17078	VPS18	1.889208e-01
17079	VPS24	1
17080	VPS25	1
17081	VPS26A	1
17082	VPS26B	1
17083	VPS28	1
17084	VPS29	1
In gene VPS33A the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 1843    n = 1	mu =   9.08e-07
17085	VPS33A	2.026036e-01
In gene VPS33B the following bins exceed PROBCAP:
    PRAD-CH-5761	categ 6	N = 1932    n = 1	mu =   2.99e-07
17086	VPS33B	7.555672e-02
17087	VPS35	2.394508e-01
17088	VPS36	1
17089	VPS37A	1
17090	VPS37B	1
17091	VPS37C	1
17092	VPS37D	1
17093	VPS39	1
17094	VPS41	1
17095	VPS45	1
17096	VPS4A	1
17097	VPS4B	1
17098	VPS52	1
17099	VPS53	1.165398e-01
17100	VPS54	1
17101	VPS72	1
17102	VPS8	1
17103	VRK1	1
17104	VRK2	1
17105	VRK3	4.305715e-02
17106	VSIG1	1
17107	VSIG10	1
17108	VSIG2	1
17109	VSIG4	8.418926e-02
17110	VSIG8	5.680871e-02
17111	VSNL1	1
17112	VSTM1	1
17113	VSTM2A	7.585684e-02
17114	VSTM2L	1
17115	VSX1	1
17116	VSX2	1
17117	VTA1	1
17118	VTCN1	1
17119	VTI1A	1
17120	VTI1B	1
17121	VTN	1
17122	VWA1	1
17123	VWA2	1
17124	VWA3A	1.430193e-01
17125	VWA3B	1.499550e-01
17126	VWA5A	1
17127	VWC2	1
17128	VWC2L	7.894563e-02
17129	VWCE	1
17130	VWF	1
17131	WAC	1
17132	WAPAL	1
17133	WARS	1
17134	WARS2	1
17135	WAS	1
17136	WASF1	1
17137	WASF2	1
Done

Running MutSig 2:
Scatter job 189: processing genes 17047 - 17137
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
VPS13C
Processing conservation and coverage...
85% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.658537e-02	ci left: 8.410158e-01	ci right 8.551807e-01	k: 8482	n:10000
KS ci ratio: 1.271204e-02	ci left: 8.989819e-01	ci right 9.105811e-01	k: 9049	n:10000
VPS13C   10000 perm   3 sec   (3357 perm/sec)   p_kst 9.049000e-01   p_cons 8.482000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000189/VPS13C.3_11630_10000_0.9049_0.8482_1.png
                gene_name: VPS13C
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
VPS13B
Processing conservation and coverage...
79% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.472717e-03	ci left: 9.402467e-01	ci right 9.492921e-01	k: 9449	n:10000
Cons ci ratio: 2.029037e-02	ci left: 7.805653e-01	ci right 7.966662e-01	k: 7887	n:10000
KS ci ratio: 1.917116e-02	ci left: 7.991260e-01	ci right 8.146948e-01	k: 8070	n:10000
VPS13B   10000 perm   3 sec   (3362 perm/sec)   p_kst 8.070000e-01   p_cons 7.887000e-01   p_joint 9.449000e-01

Outputting figure to mutsig2_images.part000000000189/VPS13B.2_12507_10000_0.807_0.7887_0.9449.png
                gene_name: VPS13B
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 67 percent done.
VPS13D
Processing conservation and coverage...
74% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.993082e-02	ci left: 7.865466e-01	ci right 8.024815e-01	k: 7946	n:10000
Cons ci ratio: 2.634707e-02	ci left: 6.796217e-01	ci right 6.978683e-01	k: 6888	n:10000
KS ci ratio: 6.829591e-02	ci left: 2.392637e-01	ci right 2.562834e-01	k: 2477	n:10000
VPS13D   10000 perm   3 sec   (3383 perm/sec)   p_kst 2.477000e-01   p_cons 6.888000e-01   p_joint 7.946000e-01

Outputting figure to mutsig2_images.part000000000189/VPS13D.2_13443_10000_0.2477_0.6888_0.7946.png
                gene_name: VPS13D
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000189
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 189 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1713>
Subject: Job 9878362: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1713>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000190> was used as the working directory.
Started at Fri Oct  5 23:02:24 2012
Results reported at Fri Oct  5 23:04:06 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000190.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000190.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 190  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000190.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    108.96 sec.
    Max Memory :      1945 MB
    Max Swap   :      4632 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
190
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 190
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 190: processing genes 17138 - 17227
Calculating significance of each gene.
Using projection method.
17138	WASF3	1.147291e-01
17139	WASL	1
17140	WBP1	1
17141	WBP11	1
17142	WBP2	1
17143	WBP2NL	1
17144	WBP4	1
17145	WBP5	1
17146	WBSCR16	1
17147	WBSCR17	9.809890e-02
17148	WBSCR22	1
17149	WBSCR27	3.235009e-02
17150	WBSCR28	1
17151	WDFY1	1.186563e-01
17152	WDFY2	1
17153	WDFY3	2.541275e-01
17154	WDHD1	1.837020e-01
17155	WDR1	1
17156	WDR11	1
17157	WDR12	1
17158	WDR13	1
17159	WDR16	2.083250e-01
17160	WDR17	1.081728e-01
17161	WDR18	1
17162	WDR19	1
17163	WDR20	1
17164	WDR24	1
17165	WDR25	1
17166	WDR26	1
17167	WDR27	1
17168	WDR3	1.353379e-01
17169	WDR31	1
17170	WDR33	1
17171	WDR34	1
17172	WDR35	1
17173	WDR36	1
17174	WDR37	2.281907e-02
17175	WDR38	4.118631e-02
17176	WDR4	1
17177	WDR41	1
17178	WDR43	1
17179	WDR44	1
17180	WDR45	1
17181	WDR45L	1
17182	WDR46	1
17183	WDR47	1
17184	WDR48	1
17185	WDR49	1
17186	WDR5	1
17187	WDR52	1.107052e-01
17188	WDR53	1
17189	WDR54	1
17190	WDR55	1
17191	WDR59	2.508022e-01
17192	WDR5B	1
17193	WDR6	3.502175e-01
17194	WDR60	1
17195	WDR61	1
17196	WDR62	2.897483e-01
17197	WDR63	1
17198	WDR64	1.750100e-01
17199	WDR65	1
17200	WDR66	3.002816e-01
17201	WDR67	1
17202	WDR69	1
17203	WDR7	3.538783e-01
17204	WDR70	1
17205	WDR72	1.815692e-01
17206	WDR73	1
17207	WDR74	1
17208	WDR75	1
17209	WDR76	1
17210	WDR77	8.883610e-02
17211	WDR78	1
17212	WDR8	1
17213	WDR81	2.147915e-01
17214	WDR82	1
17215	WDR83	1
17216	WDR85	1
17217	WDR86	1
17218	WDR88	1
17219	WDR89	1
17220	WDR90	1
17221	WDR91	1
17222	WDR92	1
17223	WDR93	1.663607e-01
17224	WDSUB1	1
17225	WDTC1	1
17226	WDYHV1	3.304012e-02
17227	WEE1	1
Done

Running MutSig 2:
Scatter job 190: processing genes 17138 - 17227
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
WDFY3
Processing conservation and coverage...
91% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.397380e-02	ci left: 5.612300e-01	ci right 5.807287e-01	k: 5710	n:10000
Cons ci ratio: 1.108203e-01	ci left: 1.050046e-01	ci right 1.174229e-01	k: 1111	n:10000
KS ci ratio: 1.587755e-02	ci left: 8.521264e-01	ci right 8.658638e-01	k: 8591	n:10000
WDFY3   10000 perm   3 sec   (3554 perm/sec)   p_kst 8.591000e-01   p_cons 1.111000e-01   p_joint 5.710000e-01

Joint ci ratio: 1.327223e-02	ci left: 8.080313e-01	ci right 8.188774e-01	k: 16270	n:20000
Cons ci ratio: 7.896375e-02	ci left: 1.053517e-01	ci right 1.140622e-01	k: 2193	n:20000
KS ci ratio: 1.125410e-02	ci left: 8.535925e-01	ci right 8.633030e-01	k: 17170	n:20000
WDFY3   20000 perm   9 sec   (2213 perm/sec)   p_kst 8.585000e-01   p_cons 1.096500e-01   p_joint 8.135000e-01

Outputting figure to mutsig2_images.part000000000190/WDFY3.2_10884_20000_0.8585_0.10965_0.8135.png
                gene_name: WDFY3
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000190
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 190 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1645>
Subject: Job 9878367: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1645>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000191> was used as the working directory.
Started at Fri Oct  5 23:02:24 2012
Results reported at Fri Oct  5 23:20:14 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000191.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000191.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 191  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000191.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1103.20 sec.
    Max Memory :      2158 MB
    Max Swap   :      4665 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
191
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 191
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 191: processing genes 17228 - 17318
Calculating significance of each gene.
Using projection method.
17228	WEE2	1
17229	WFDC1	1
17230	WFDC10A	1
17231	WFDC10B	1
17232	WFDC11	1
17233	WFDC12	1
17234	WFDC13	1
17235	WFDC2	1
17236	WFDC3	1
17237	WFDC5	1
17238	WFDC6	1
17239	WFDC8	1
17240	WFDC9	1
17241	WFIKKN1	1
17242	WFIKKN2	1
17243	WFS1	1
17244	WHAMM	1
17245	WHSC1	1
17246	WHSC1L1	1.546091e-01
17247	WHSC2	1
17248	WIBG	1
17249	WIF1	1
17250	WIPF1	1
17251	WIPF2	1.237298e-01
17252	WIPF3	1
17253	WIPI1	1
17254	WIPI2	1
17255	WISP1	1
17256	WISP2	1
17257	WISP3	1
17258	WIZ	1
17259	WLS	1
17260	WNK1	1
17261	WNK2	1
17262	WNK3	1.885161e-01
17263	WNK4	2.773297e-01
17264	WNT1	9.558654e-02
17265	WNT10A	1
In gene WNT10B the following bins exceed PROBCAP:
    PRAD-EJ-5542	categ 6	N = 1033    n = 1	mu =   1.32e-07
17266	WNT10B	1.657263e-02
17267	WNT11	1.976049e-03
17268	WNT16	1
17269	WNT2	2.896749e-02
17270	WNT2B	1
17271	WNT3	1
17272	WNT3A	1
17273	WNT4	1
17274	WNT5A	2.630455e-02
17275	WNT5B	1
17276	WNT6	1
17277	WNT7A	1
17278	WNT7B	1
17279	WNT8A	1
17280	WNT8B	1
17281	WNT9A	6.770913e-02
17282	WNT9B	1
17283	WRAP53	1
17284	WRB	1
17285	WRN	1
17286	WRNIP1	1
17287	WSB1	1
17288	WSB2	1.046034e-01
17289	WSCD1	1
17290	WSCD2	1
17291	WT1	1
17292	WTAP	1
17293	WTIP	1
17294	WWC1	1
17295	WWC2	7.100761e-02
17296	WWC3	1
17297	WWOX	1
17298	WWP1	1
17299	WWP2	1
17300	WWTR1	1
17301	XAB2	1
17302	XAF1	1
17303	XAGE3	1
17304	XAGE5	1
17305	XBP1	1
17306	XCL1	1
17307	XCL2	1
17308	XCR1	1.232907e-01
17309	XDH	1
17310	XG	1
17311	XIAP	1
17312	XIRP1	1.364164e-01
17313	XIRP2	1.739803e-01
17314	XK	4.061057e-02
17315	XKR3	1
17316	XKR4	1
17317	XKR5	1
17318	XKR6	1
Done

Running MutSig 2:
Scatter job 191: processing genes 17228 - 17318
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
WNT11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.635411e-01	ci left: 5.460790e-03	ci right 8.835916e-03	k: 70	n:10000
Cons ci ratio: 1.528263e-02	ci left: 8.613106e-01	ci right 8.746743e-01	k: 8681	n:10000
KS ci ratio: 1.046878e+00	ci left: 6.923711e-04	ci right 2.222014e-03	k: 13	n:10000
WNT11   10000 perm   2 sec   (6013 perm/sec)   p_kst 1.300000e-03   p_cons 8.681000e-01   p_joint 7.000000e-03

Joint ci ratio: 8.549436e-01	ci left: 6.109296e-04	ci right 1.543998e-03	k: 20	n:20000
Cons ci ratio: 1.077248e-02	ci left: 8.640423e-01	ci right 8.734502e-01	k: 17376	n:20000
KS ci ratio: 8.549436e-01	ci left: 6.109296e-04	ci right 1.543998e-03	k: 20	n:20000
WNT11   20000 perm   6 sec   (3178 perm/sec)   p_kst 1.000000e-03   p_cons 8.688000e-01   p_joint 1.000000e-03

Joint ci ratio: 2.530818e-01	ci left: 6.929423e-03	ci right 8.967601e-03	k: 237	n:30000
Cons ci ratio: 8.804438e-03	ci left: 8.646910e-01	ci right 8.723708e-01	k: 26057	n:30000
KS ci ratio: 7.036772e-01	ci left: 6.747943e-04	ci right 1.427257e-03	k: 30	n:30000
WNT11   30000 perm   8 sec   (3562 perm/sec)   p_kst 1.000000e-03   p_cons 8.685667e-01   p_joint 7.900000e-03

Joint ci ratio: 2.148943e-01	ci left: 7.363245e-03	ci right 9.159242e-03	k: 329	n:40000
Cons ci ratio: 7.606104e-03	ci left: 8.657806e-01	ci right 8.724157e-01	k: 34765	n:40000
KS ci ratio: 6.355979e-01	ci left: 6.513664e-04	ci right 1.274768e-03	k: 37	n:40000
WNT11   40000 perm   10 sec   (3821 perm/sec)   p_kst 9.250000e-04   p_cons 8.691250e-01   p_joint 8.225000e-03

Joint ci ratio: 1.900138e-01	ci left: 7.637733e-03	ci right 9.260113e-03	k: 421	n:50000
Cons ci ratio: 6.798411e-03	ci left: 8.662939e-01	ci right 8.722232e-01	k: 43464	n:50000
KS ci ratio: 5.540889e-01	ci left: 7.250946e-04	ci right 1.295407e-03	k: 49	n:50000
WNT11   50000 perm   13 sec   (3974 perm/sec)   p_kst 9.800000e-04   p_cons 8.692800e-01   p_joint 8.420000e-03

Joint ci ratio: 1.861907e-01	ci left: 6.650328e-03	ci right 8.031302e-03	k: 439	n:60000
Cons ci ratio: 6.195929e-03	ci left: 8.669298e-01	ci right 8.723344e-01	k: 52179	n:60000
KS ci ratio: 5.100853e-01	ci left: 7.341098e-04	ci right 1.249464e-03	k: 58	n:60000
WNT11   60000 perm   15 sec   (4063 perm/sec)   p_kst 9.666667e-04   p_cons 8.696500e-01   p_joint 7.316667e-03

Joint ci ratio: 1.717624e-01	ci left: 6.751096e-03	ci right 8.033104e-03	k: 516	n:70000
Cons ci ratio: 5.743699e-03	ci left: 8.668381e-01	ci right 8.718455e-01	k: 60855	n:70000
KS ci ratio: 4.822877e-01	ci left: 7.167227e-04	ci right 1.183390e-03	k: 65	n:70000
WNT11   70000 perm   17 sec   (4116 perm/sec)   p_kst 9.285714e-04   p_cons 8.693571e-01   p_joint 7.371429e-03

Joint ci ratio: 1.605128e-01	ci left: 6.805777e-03	ci right 8.005362e-03	k: 591	n:80000
Cons ci ratio: 5.384118e-03	ci left: 8.665164e-01	ci right 8.712068e-01	k: 69510	n:80000
KS ci ratio: 4.353323e-01	ci left: 7.930150e-04	ci right 1.244434e-03	k: 80	n:80000
WNT11   80000 perm   19 sec   (4130 perm/sec)   p_kst 1.000000e-03   p_cons 8.688750e-01   p_joint 7.387500e-03

Joint ci ratio: 1.507639e-01	ci left: 6.893219e-03	ci right 8.027763e-03	k: 670	n:90000
Cons ci ratio: 5.066216e-03	ci left: 8.671028e-01	ci right 8.715179e-01	k: 78239	n:90000
KS ci ratio: 4.041037e-01	ci left: 8.341119e-04	ci right 1.265756e-03	k: 93	n:90000
WNT11   90000 perm   22 sec   (4098 perm/sec)   p_kst 1.033333e-03   p_cons 8.693222e-01   p_joint 7.444444e-03

Joint ci ratio: 1.389147e-01	ci left: 7.350950e-03	ci right 8.457879e-03	k: 789	n:100000
Cons ci ratio: 4.810502e-03	ci left: 8.670139e-01	ci right 8.712047e-01	k: 86912	n:100000
KS ci ratio: 3.769966e-01	ci left: 8.769711e-04	ci right 1.292841e-03	k: 107	n:100000
WNT11   100000 perm   24 sec   (4096 perm/sec)   p_kst 1.070000e-03   p_cons 8.691200e-01   p_joint 7.890000e-03

Joint ci ratio: 1.322201e-01	ci left: 7.402876e-03	ci right 8.459680e-03	k: 871	n:110000
Cons ci ratio: 4.589045e-03	ci left: 8.669919e-01	ci right 8.709887e-01	k: 95590	n:110000
KS ci ratio: 3.576485e-01	ci left: 8.962758e-04	ci right 1.294419e-03	k: 119	n:110000
WNT11   110000 perm   27 sec   (4078 perm/sec)   p_kst 1.081818e-03   p_cons 8.690000e-01   p_joint 7.918182e-03

Joint ci ratio: 1.297402e-01	ci left: 7.059936e-03	ci right 8.047419e-03	k: 905	n:120000
Cons ci ratio: 4.390776e-03	ci left: 8.672289e-01	ci right 8.710533e-01	k: 104298	n:120000
KS ci ratio: 3.490365e-01	ci left: 8.671463e-04	ci right 1.240975e-03	k: 125	n:120000
WNT11   120000 perm   30 sec   (4051 perm/sec)   p_kst 1.041667e-03   p_cons 8.691500e-01   p_joint 7.541667e-03

Joint ci ratio: 1.254579e-01	ci left: 6.985995e-03	ci right 7.928483e-03	k: 968	n:130000
Cons ci ratio: 4.224292e-03	ci left: 8.669913e-01	ci right 8.706691e-01	k: 112949	n:130000
KS ci ratio: 3.397319e-01	ci left: 8.496311e-04	ci right 1.204003e-03	k: 132	n:130000
WNT11   130000 perm   32 sec   (4015 perm/sec)   p_kst 1.015385e-03   p_cons 8.688385e-01   p_joint 7.446154e-03

Joint ci ratio: 1.203458e-01	ci left: 7.068572e-03	ci right 7.980575e-03	k: 1052	n:140000
Cons ci ratio: 4.066719e-03	ci left: 8.672789e-01	ci right 8.708201e-01	k: 121668	n:140000
KS ci ratio: 3.167389e-01	ci left: 9.200485e-04	ci right 1.272568e-03	k: 152	n:140000
WNT11   140000 perm   35 sec   (3983 perm/sec)   p_kst 1.085714e-03   p_cons 8.690571e-01   p_joint 7.514286e-03

Joint ci ratio: 1.165368e-01	ci left: 7.050171e-03	ci right 7.929027e-03	k: 1122	n:150000
Cons ci ratio: 3.923361e-03	ci left: 8.676575e-01	ci right 8.710749e-01	k: 130406	n:150000
KS ci ratio: 3.050027e-01	ci left: 9.324744e-04	ci right 1.273949e-03	k: 164	n:150000
WNT11   150000 perm   38 sec   (3948 perm/sec)   p_kst 1.093333e-03   p_cons 8.693733e-01   p_joint 7.480000e-03

Joint ci ratio: 1.130679e-01	ci left: 7.034470e-03	ci right 7.883524e-03	k: 1192	n:160000
Cons ci ratio: 3.798538e-03	ci left: 8.677265e-01	ci right 8.710351e-01	k: 139102	n:160000
KS ci ratio: 2.912055e-01	ci left: 9.667229e-04	ci right 1.301776e-03	k: 180	n:160000
WNT11   160000 perm   41 sec   (3908 perm/sec)   p_kst 1.125000e-03   p_cons 8.693875e-01   p_joint 7.450000e-03

Joint ci ratio: 1.100232e-01	ci left: 7.003793e-03	ci right 7.824904e-03	k: 1259	n:170000
Cons ci ratio: 3.686922e-03	ci left: 8.676648e-01	ci right 8.708755e-01	k: 147777	n:170000
KS ci ratio: 2.805552e-01	ci left: 9.863088e-04	ci right 1.313439e-03	k: 194	n:170000
WNT11   170000 perm   44 sec   (3865 perm/sec)   p_kst 1.141176e-03   p_cons 8.692765e-01   p_joint 7.405882e-03

Joint ci ratio: 1.068474e-01	ci left: 7.025469e-03	ci right 7.823852e-03	k: 1335	n:180000
Cons ci ratio: 3.579430e-03	ci left: 8.679407e-01	ci right 8.710585e-01	k: 156511	n:180000
KS ci ratio: 2.742986e-01	ci left: 9.780355e-04	ci right 1.293941e-03	k: 203	n:180000
WNT11   180000 perm   47 sec   (3827 perm/sec)   p_kst 1.127778e-03   p_cons 8.695056e-01   p_joint 7.416667e-03

Joint ci ratio: 1.044923e-01	ci left: 6.968264e-03	ci right 7.741618e-03	k: 1396	n:190000
Cons ci ratio: 3.488568e-03	ci left: 8.676809e-01	ci right 8.707184e-01	k: 165149	n:190000
KS ci ratio: 2.659542e-01	ci left: 9.903492e-04	ci right 1.298880e-03	k: 216	n:190000
WNT11   190000 perm   50 sec   (3789 perm/sec)   p_kst 1.136842e-03   p_cons 8.692053e-01   p_joint 7.347368e-03

Joint ci ratio: 1.018998e-01	ci left: 6.970560e-03	ci right 7.723825e-03	k: 1468	n:200000
Cons ci ratio: 3.403751e-03	ci left: 8.674833e-01	ci right 8.704460e-01	k: 173794	n:200000
KS ci ratio: 2.577674e-01	ci left: 1.006239e-03	ci right 1.308518e-03	k: 230	n:200000
WNT11   200000 perm   54 sec   (3720 perm/sec)   p_kst 1.150000e-03   p_cons 8.689700e-01   p_joint 7.340000e-03

Joint ci ratio: 9.955624e-02	ci left: 6.963563e-03	ci right 7.697754e-03	k: 1538	n:210000
Cons ci ratio: 3.318990e-03	ci left: 8.677073e-01	ci right 8.705967e-01	k: 182523	n:210000
KS ci ratio: 2.528897e-01	ci left: 9.984373e-04	ci right 1.291803e-03	k: 239	n:210000
WNT11   210000 perm   57 sec   (3676 perm/sec)   p_kst 1.138095e-03   p_cons 8.691571e-01   p_joint 7.323810e-03

Joint ci ratio: 9.715463e-02	ci left: 6.988432e-03	ci right 7.706458e-03	k: 1615	n:220000
Cons ci ratio: 3.242393e-03	ci left: 8.677611e-01	ci right 8.705837e-01	k: 191219	n:220000
KS ci ratio: 2.463060e-01	ci left: 1.008450e-03	ci right 1.295863e-03	k: 252	n:220000
WNT11   220000 perm   61 sec   (3635 perm/sec)   p_kst 1.145455e-03   p_cons 8.691773e-01   p_joint 7.340909e-03

Joint ci ratio: 9.177623e-02	ci left: 7.508241e-03	ci right 8.234678e-03	k: 1809	n:230000
Cons ci ratio: 3.168015e-03	ci left: 8.680161e-01	ci right 8.707746e-01	k: 199962	n:230000
KS ci ratio: 2.375438e-01	ci left: 1.042209e-03	ci right 1.327123e-03	k: 271	n:230000
WNT11   230000 perm   64 sec   (3585 perm/sec)   p_kst 1.178261e-03   p_cons 8.694000e-01   p_joint 7.865217e-03

Joint ci ratio: 9.304266e-02	ci left: 6.999935e-03	ci right 7.687044e-03	k: 1761	n:240000
Cons ci ratio: 3.102620e-03	ci left: 8.679491e-01	ci right 8.706503e-01	k: 208633	n:240000
KS ci ratio: 2.316558e-01	ci left: 1.053690e-03	ci right 1.333581e-03	k: 285	n:240000
WNT11   240000 perm   68 sec   (3543 perm/sec)   p_kst 1.187500e-03   p_cons 8.693042e-01   p_joint 7.337500e-03

Joint ci ratio: 9.104837e-02	ci left: 7.024759e-03	ci right 7.698738e-03	k: 1839	n:250000
Cons ci ratio: 3.040043e-03	ci left: 8.679684e-01	ci right 8.706150e-01	k: 217324	n:250000
KS ci ratio: 2.269437e-01	ci left: 1.056785e-03	ci right 1.330990e-03	k: 297	n:250000
WNT11   250000 perm   71 sec   (3505 perm/sec)   p_kst 1.188000e-03   p_cons 8.692960e-01   p_joint 7.356000e-03

Joint ci ratio: 8.901356e-02	ci left: 7.074146e-03	ci right 7.736906e-03	k: 1924	n:260000
Cons ci ratio: 2.979087e-03	ci left: 8.681412e-01	ci right 8.707351e-01	k: 226055	n:260000
KS ci ratio: 2.193428e-01	ci left: 1.092398e-03	ci right 1.365070e-03	k: 318	n:260000
WNT11   260000 perm   75 sec   (3469 perm/sec)   p_kst 1.223077e-03   p_cons 8.694423e-01   p_joint 7.400000e-03

Joint ci ratio: 8.748283e-02	ci left: 7.058432e-03	ci right 7.707765e-03	k: 1992	n:270000
Cons ci ratio: 2.924038e-03	ci left: 8.681157e-01	ci right 8.706615e-01	k: 234736	n:270000
KS ci ratio: 2.153302e-01	ci left: 1.093964e-03	ci right 1.361372e-03	k: 330	n:270000
WNT11   270000 perm   79 sec   (3428 perm/sec)   p_kst 1.222222e-03   p_cons 8.693926e-01   p_joint 7.377778e-03

Joint ci ratio: 8.573557e-02	ci left: 7.092864e-03	ci right 7.731681e-03	k: 2074	n:280000
Cons ci ratio: 2.872111e-03	ci left: 8.680782e-01	ci right 8.705785e-01	k: 243413	n:280000
KS ci ratio: 2.109153e-01	ci left: 1.102226e-03	ci right 1.365415e-03	k: 344	n:280000
WNT11   280000 perm   83 sec   (3383 perm/sec)   p_kst 1.228571e-03   p_cons 8.693321e-01   p_joint 7.407143e-03

Joint ci ratio: 8.436526e-02	ci left: 7.077776e-03	ci right 7.704543e-03	k: 2142	n:290000
Cons ci ratio: 2.822257e-03	ci left: 8.680920e-01	ci right 8.705489e-01	k: 252104	n:290000
KS ci ratio: 2.064735e-01	ci left: 1.113240e-03	ci right 1.372754e-03	k: 359	n:290000
WNT11   290000 perm   87 sec   (3327 perm/sec)   p_kst 1.237931e-03   p_cons 8.693241e-01   p_joint 7.386207e-03

Joint ci ratio: 8.294531e-02	ci left: 7.083357e-03	ci right 7.699550e-03	k: 2216	n:300000
Cons ci ratio: 2.775196e-03	ci left: 8.680819e-01	ci right 8.704976e-01	k: 260788	n:300000
KS ci ratio: 2.042184e-01	ci left: 1.101427e-03	ci right 1.355033e-03	k: 367	n:300000
WNT11   300000 perm   91 sec   (3281 perm/sec)   p_kst 1.223333e-03   p_cons 8.692933e-01   p_joint 7.386667e-03

Joint ci ratio: 8.173862e-02	ci left: 7.063378e-03	ci right 7.668467e-03	k: 2282	n:310000
Cons ci ratio: 2.732738e-03	ci left: 8.678785e-01	ci right 8.702566e-01	k: 269412	n:310000
KS ci ratio: 2.009681e-01	ci left: 1.102643e-03	ci right 1.351993e-03	k: 379	n:310000
WNT11   310000 perm   96 sec   (3241 perm/sec)   p_kst 1.222581e-03   p_cons 8.690710e-01   p_joint 7.361290e-03

Joint ci ratio: 8.030804e-02	ci left: 7.093709e-03	ci right 7.690264e-03	k: 2364	n:320000
Cons ci ratio: 2.690538e-03	ci left: 8.678261e-01	ci right 8.701672e-01	k: 278080	n:320000
KS ci ratio: 1.981215e-01	ci left: 1.100843e-03	ci right 1.345833e-03	k: 390	n:320000
WNT11   320000 perm   100 sec   (3197 perm/sec)   p_kst 1.218750e-03   p_cons 8.690000e-01   p_joint 7.387500e-03

Joint ci ratio: 7.911305e-02	ci left: 7.092581e-03	ci right 7.679756e-03	k: 2436	n:330000
Cons ci ratio: 2.652279e-03	ci left: 8.676008e-01	ci right 8.699079e-01	k: 286690	n:330000
KS ci ratio: 1.941870e-01	ci left: 1.113589e-03	ci right 1.355912e-03	k: 406	n:330000
WNT11   330000 perm   105 sec   (3151 perm/sec)   p_kst 1.230303e-03   p_cons 8.687576e-01   p_joint 7.381818e-03

Joint ci ratio: 7.790732e-02	ci left: 7.103118e-03	ci right 7.681796e-03	k: 2512	n:340000
Cons ci ratio: 2.612565e-03	ci left: 8.676546e-01	ci right 8.699273e-01	k: 295390	n:340000
KS ci ratio: 1.911580e-01	ci left: 1.117227e-03	ci right 1.356110e-03	k: 419	n:340000
WNT11   340000 perm   109 sec   (3107 perm/sec)   p_kst 1.232353e-03   p_cons 8.687941e-01   p_joint 7.388235e-03

Joint ci ratio: 7.662104e-02	ci left: 7.138341e-03	ci right 7.709860e-03	k: 2597	n:350000
Cons ci ratio: 2.574066e-03	ci left: 8.677516e-01	ci right 8.699909e-01	k: 304106	n:350000
KS ci ratio: 1.880491e-01	ci left: 1.123408e-03	ci right 1.359260e-03	k: 433	n:350000
WNT11   350000 perm   114 sec   (3068 perm/sec)   p_kst 1.237143e-03   p_cons 8.688743e-01   p_joint 7.420000e-03

Joint ci ratio: 7.575281e-02	ci left: 7.103540e-03	ci right 7.665544e-03	k: 2657	n:360000
Cons ci ratio: 2.538086e-03	ci left: 8.677653e-01	ci right 8.699732e-01	k: 312794	n:360000
KS ci ratio: 1.857107e-01	ci left: 1.121328e-03	ci right 1.353486e-03	k: 444	n:360000
WNT11   360000 perm   119 sec   (3034 perm/sec)   p_kst 1.233333e-03   p_cons 8.688722e-01   p_joint 7.380556e-03

Joint ci ratio: 7.458243e-02	ci left: 7.134316e-03	ci right 7.689656e-03	k: 2741	n:370000
Cons ci ratio: 2.503039e-03	ci left: 8.678272e-01	ci right 8.700048e-01	k: 321500	n:370000
KS ci ratio: 1.828562e-01	ci left: 1.127115e-03	ci right 1.356486e-03	k: 458	n:370000
WNT11   370000 perm   123 sec   (2997 perm/sec)   p_kst 1.237838e-03   p_cons 8.689189e-01   p_joint 7.408108e-03

Joint ci ratio: 7.342541e-02	ci left: 7.171287e-03	ci right 7.720475e-03	k: 2828	n:380000
Cons ci ratio: 2.470204e-03	ci left: 8.678122e-01	ci right 8.699611e-01	k: 330178	n:380000
KS ci ratio: 1.803203e-01	ci left: 1.130110e-03	ci right 1.356553e-03	k: 471	n:380000
WNT11   380000 perm   129 sec   (2955 perm/sec)   p_kst 1.239474e-03   p_cons 8.688895e-01   p_joint 7.442105e-03

Joint ci ratio: 7.322418e-02	ci left: 7.027662e-03	ci right 7.564313e-03	k: 2844	n:390000
Cons ci ratio: 2.438271e-03	ci left: 8.678316e-01	ci right 8.699527e-01	k: 338869	n:390000
KS ci ratio: 1.789991e-01	ci left: 1.118273e-03	ci right 1.340526e-03	k: 478	n:390000
WNT11   390000 perm   134 sec   (2906 perm/sec)   p_kst 1.225641e-03   p_cons 8.688949e-01   p_joint 7.292308e-03

Joint ci ratio: 7.233992e-02	ci left: 7.023785e-03	ci right 7.553390e-03	k: 2914	n:400000
Cons ci ratio: 2.406858e-03	ci left: 8.679154e-01	ci right 8.700093e-01	k: 347586	n:400000
KS ci ratio: 1.775238e-01	ci left: 1.109424e-03	ci right 1.327905e-03	k: 486	n:400000
WNT11   400000 perm   139 sec   (2868 perm/sec)   p_kst 1.215000e-03   p_cons 8.689650e-01   p_joint 7.285000e-03

Joint ci ratio: 7.164425e-02	ci left: 6.988990e-03	ci right 7.510693e-03	k: 2971	n:410000
Cons ci ratio: 2.376730e-03	ci left: 8.679854e-01	ci right 8.700533e-01	k: 356299	n:410000
KS ci ratio: 1.766210e-01	ci left: 1.094018e-03	ci right 1.308253e-03	k: 491	n:410000
WNT11   410000 perm   145 sec   (2832 perm/sec)   p_kst 1.197561e-03   p_cons 8.690220e-01   p_joint 7.246341e-03

Joint ci ratio: 7.075681e-02	ci left: 6.997979e-03	ci right 7.513616e-03	k: 3046	n:420000
Cons ci ratio: 2.349449e-03	ci left: 8.678827e-01	ci right 8.699265e-01	k: 364941	n:420000
KS ci ratio: 1.753788e-01	ci left: 1.083902e-03	ci right 1.294505e-03	k: 498	n:420000
WNT11   420000 perm   150 sec   (2798 perm/sec)   p_kst 1.185714e-03   p_cons 8.689071e-01   p_joint 7.252381e-03

Joint ci ratio: 6.985648e-02	ci left: 7.015728e-03	ci right 7.525829e-03	k: 3125	n:430000
Cons ci ratio: 2.321923e-03	ci left: 8.678992e-01	ci right 8.699191e-01	k: 373632	n:430000
KS ci ratio: 1.722975e-01	ci left: 1.098735e-03	ci right 1.308079e-03	k: 516	n:430000
WNT11   430000 perm   156 sec   (2754 perm/sec)   p_kst 1.200000e-03   p_cons 8.689116e-01   p_joint 7.267442e-03

Joint ci ratio: 6.912014e-02	ci left: 7.005905e-03	ci right 7.509707e-03	k: 3192	n:440000
Cons ci ratio: 2.295641e-03	ci left: 8.678855e-01	ci right 8.698824e-01	k: 382310	n:440000
KS ci ratio: 1.701711e-01	ci left: 1.102043e-03	ci right 1.309160e-03	k: 529	n:440000
WNT11   440000 perm   162 sec   (2724 perm/sec)   p_kst 1.202273e-03   p_cons 8.688864e-01   p_joint 7.254545e-03

Joint ci ratio: 6.825911e-02	ci left: 7.027129e-03	ci right 7.525913e-03	k: 3273	n:450000
Cons ci ratio: 2.270895e-03	ci left: 8.678056e-01	ci right 8.697807e-01	k: 390958	n:450000
KS ci ratio: 1.685885e-01	ci left: 1.098834e-03	ci right 1.303231e-03	k: 539	n:450000
WNT11   450000 perm   167 sec   (2690 perm/sec)   p_kst 1.197778e-03   p_cons 8.687956e-01   p_joint 7.273333e-03

Joint ci ratio: 6.763284e-02	ci left: 7.004718e-03	ci right 7.497171e-03	k: 3334	n:460000
Cons ci ratio: 2.246695e-03	ci left: 8.677533e-01	ci right 8.697072e-01	k: 399617	n:460000
KS ci ratio: 1.678147e-01	ci left: 1.085357e-03	ci right 1.286228e-03	k: 544	n:460000
WNT11   460000 perm   173 sec   (2656 perm/sec)   p_kst 1.182609e-03   p_cons 8.687326e-01   p_joint 7.247826e-03

Joint ci ratio: 6.689465e-02	ci left: 7.010481e-03	ci right 7.497751e-03	k: 3408	n:470000
Cons ci ratio: 2.221200e-03	ci left: 8.679147e-01	ci right 8.698467e-01	k: 408375	n:470000
KS ci ratio: 1.658481e-01	ci left: 1.088769e-03	ci right 1.287674e-03	k: 557	n:470000
WNT11   470000 perm   179 sec   (2631 perm/sec)   p_kst 1.185106e-03   p_cons 8.688830e-01   p_joint 7.251064e-03

Joint ci ratio: 6.612276e-02	ci left: 7.028326e-03	ci right 7.510983e-03	k: 3488	n:480000
Cons ci ratio: 2.198218e-03	ci left: 8.678960e-01	ci right 8.698079e-01	k: 417050	n:480000
KS ci ratio: 1.648184e-01	ci left: 1.080066e-03	ci right 1.276035e-03	k: 564	n:480000
WNT11   480000 perm   184 sec   (2607 perm/sec)   p_kst 1.175000e-03   p_cons 8.688542e-01   p_joint 7.266667e-03

Joint ci ratio: 6.437611e-02	ci left: 7.268356e-03	ci right 7.753821e-03	k: 3679	n:490000
Cons ci ratio: 2.176267e-03	ci left: 8.678433e-01	ci right 8.697360e-01	k: 425708	n:490000
KS ci ratio: 1.630955e-01	ci left: 1.081509e-03	ci right 1.275487e-03	k: 576	n:490000
WNT11   490000 perm   190 sec   (2579 perm/sec)   p_kst 1.175510e-03   p_cons 8.687918e-01   p_joint 7.508163e-03

Joint ci ratio: 6.379848e-02	ci left: 7.254840e-03	ci right 7.734893e-03	k: 3746	n:500000
Cons ci ratio: 2.153466e-03	ci left: 8.679513e-01	ci right 8.698244e-01	k: 434445	n:500000
KS ci ratio: 1.608795e-01	ci left: 1.090582e-03	ci right 1.283273e-03	k: 592	n:500000
WNT11   500000 perm   197 sec   (2540 perm/sec)   p_kst 1.184000e-03   p_cons 8.688900e-01   p_joint 7.492000e-03

Joint ci ratio: 6.325284e-02	ci left: 7.238013e-03	ci right 7.712706e-03	k: 3811	n:510000
Cons ci ratio: 2.132486e-03	ci left: 8.679352e-01	ci right 8.697900e-01	k: 443121	n:510000
KS ci ratio: 1.598057e-01	ci left: 1.084255e-03	ci right 1.274426e-03	k: 600	n:510000
WNT11   510000 perm   203 sec   (2508 perm/sec)   p_kst 1.176471e-03   p_cons 8.688647e-01   p_joint 7.472549e-03

Joint ci ratio: 6.260717e-02	ci left: 7.248354e-03	ci right 7.718697e-03	k: 3890	n:520000
Cons ci ratio: 2.111572e-03	ci left: 8.679777e-01	ci right 8.698143e-01	k: 451827	n:520000
KS ci ratio: 1.583632e-01	ci left: 1.083715e-03	ci right 1.271913e-03	k: 611	n:520000
WNT11   520000 perm   210 sec   (2478 perm/sec)   p_kst 1.175000e-03   p_cons 8.688981e-01   p_joint 7.480769e-03

Joint ci ratio: 6.200449e-02	ci left: 7.252755e-03	ci right 7.718691e-03	k: 3966	n:530000
Cons ci ratio: 2.091903e-03	ci left: 8.679487e-01	ci right 8.697681e-01	k: 460496	n:530000
KS ci ratio: 1.572118e-01	ci left: 1.079578e-03	ci right 1.265566e-03	k: 620	n:530000
WNT11   530000 perm   217 sec   (2437 perm/sec)   p_kst 1.169811e-03   p_cons 8.688604e-01   p_joint 7.483019e-03

Joint ci ratio: 6.571504e-02	ci left: 6.331108e-03	ci right 6.763101e-03	k: 3534	n:540000
Cons ci ratio: 2.162233e-03	ci left: 8.579575e-01	ci right 8.598164e-01	k: 463800	n:540000
KS ci ratio: 1.557145e-01	ci left: 1.080938e-03	ci right 1.265221e-03	k: 632	n:540000
WNT11   540000 perm   224 sec   (2414 perm/sec)   p_kst 1.170370e-03   p_cons 8.588889e-01   p_joint 6.544444e-03

Joint ci ratio: 6.521033e-02	ci left: 6.314358e-03	ci right 6.741774e-03	k: 3589	n:550000
Cons ci ratio: 2.142565e-03	ci left: 8.579571e-01	ci right 8.597991e-01	k: 472384	n:550000
KS ci ratio: 1.542592e-01	ci left: 1.082257e-03	ci right 1.264881e-03	k: 644	n:550000
WNT11   550000 perm   230 sec   (2391 perm/sec)   p_kst 1.170909e-03   p_cons 8.588800e-01   p_joint 6.525455e-03

Joint ci ratio: 6.470814e-02	ci left: 6.299976e-03	ci right 6.723011e-03	k: 3645	n:560000
Cons ci ratio: 2.123548e-03	ci left: 8.579425e-01	ci right 8.597681e-01	k: 480960	n:560000
KS ci ratio: 1.529605e-01	ci left: 1.081819e-03	ci right 1.262691e-03	k: 655	n:560000
WNT11   560000 perm   237 sec   (2368 perm/sec)   p_kst 1.169643e-03   p_cons 8.588571e-01   p_joint 6.508929e-03

Joint ci ratio: 6.409550e-02	ci left: 6.310281e-03	ci right 6.729847e-03	k: 3715	n:570000
Cons ci ratio: 2.105608e-03	ci left: 8.578616e-01	ci right 8.596716e-01	k: 489498	n:570000
KS ci ratio: 1.520367e-01	ci left: 1.076339e-03	ci right 1.255109e-03	k: 663	n:570000
WNT11   570000 perm   243 sec   (2343 perm/sec)   p_kst 1.163158e-03   p_cons 8.587684e-01   p_joint 6.517544e-03

Joint ci ratio: 6.355911e-02	ci left: 6.308370e-03	ci right 6.724169e-03	k: 3778	n:580000
Cons ci ratio: 2.087002e-03	ci left: 8.579133e-01	ci right 8.597073e-01	k: 498111	n:580000
KS ci ratio: 1.512422e-01	ci left: 1.069392e-03	ci right 1.245996e-03	k: 670	n:580000
WNT11   580000 perm   250 sec   (2320 perm/sec)   p_kst 1.155172e-03   p_cons 8.588121e-01   p_joint 6.513793e-03

Joint ci ratio: 6.316018e-02	ci left: 6.281512e-03	ci right 6.692848e-03	k: 3826	n:590000
Cons ci ratio: 2.069415e-03	ci left: 8.579003e-01	ci right 8.596792e-01	k: 506687	n:590000
KS ci ratio: 1.500177e-01	ci left: 1.069208e-03	ci right 1.244224e-03	k: 681	n:590000
WNT11   590000 perm   257 sec   (2299 perm/sec)   p_kst 1.154237e-03   p_cons 8.587915e-01   p_joint 6.484746e-03

Joint ci ratio: 6.263054e-02	ci left: 6.283450e-03	ci right 6.691337e-03	k: 3891	n:600000
Cons ci ratio: 2.052040e-03	ci left: 8.579146e-01	ci right 8.596786e-01	k: 515279	n:600000
KS ci ratio: 1.487150e-01	ci left: 1.070641e-03	ci right 1.244234e-03	k: 693	n:600000
WNT11   600000 perm   263 sec   (2281 perm/sec)   p_kst 1.155000e-03   p_cons 8.587983e-01   p_joint 6.485000e-03

Joint ci ratio: 6.204302e-02	ci left: 6.299865e-03	ci right 6.704843e-03	k: 3965	n:610000
Cons ci ratio: 2.034352e-03	ci left: 8.580173e-01	ci right 8.597662e-01	k: 523925	n:610000
KS ci ratio: 1.477603e-01	ci left: 1.067296e-03	ci right 1.239138e-03	k: 702	n:610000
WNT11   610000 perm   270 sec   (2256 perm/sec)   p_kst 1.150820e-03   p_cons 8.588934e-01   p_joint 6.500000e-03

Joint ci ratio: 6.153309e-02	ci left: 6.303061e-03	ci right 6.704797e-03	k: 4031	n:620000
Cons ci ratio: 2.017892e-03	ci left: 8.580229e-01	ci right 8.597576e-01	k: 532513	n:620000
KS ci ratio: 1.463103e-01	ci left: 1.071831e-03	ci right 1.242562e-03	k: 716	n:620000
WNT11   620000 perm   277 sec   (2234 perm/sec)   p_kst 1.154839e-03   p_cons 8.588919e-01   p_joint 6.501613e-03

Joint ci ratio: 6.103552e-02	ci left: 6.306170e-03	ci right 6.704738e-03	k: 4097	n:630000
Cons ci ratio: 2.002021e-03	ci left: 8.580045e-01	ci right 8.597255e-01	k: 541086	n:630000
KS ci ratio: 1.448031e-01	ci left: 1.077761e-03	ci right 1.247515e-03	k: 731	n:630000
WNT11   630000 perm   285 sec   (2214 perm/sec)   p_kst 1.160317e-03   p_cons 8.588667e-01   p_joint 6.503175e-03

Joint ci ratio: 6.045492e-02	ci left: 6.329201e-03	ci right 6.725286e-03	k: 4176	n:640000
Cons ci ratio: 1.986097e-03	ci left: 8.580384e-01	ci right 8.597458e-01	k: 549692	n:640000
KS ci ratio: 1.437272e-01	ci left: 1.077488e-03	ci right 1.245830e-03	k: 742	n:640000
WNT11   640000 perm   292 sec   (2195 perm/sec)   p_kst 1.159375e-03   p_cons 8.588938e-01   p_joint 6.525000e-03

Joint ci ratio: 6.004699e-02	ci left: 6.318198e-03	ci right 6.710835e-03	k: 4233	n:650000
Cons ci ratio: 1.970559e-03	ci left: 8.580698e-01	ci right 8.597639e-01	k: 558297	n:650000
KS ci ratio: 1.426750e-01	ci left: 1.077228e-03	ci right 1.244192e-03	k: 753	n:650000
WNT11   650000 perm   299 sec   (2177 perm/sec)   p_kst 1.158462e-03   p_cons 8.589185e-01   p_joint 6.512308e-03

Joint ci ratio: 5.953558e-02	ci left: 6.331422e-03	ci right 6.721414e-03	k: 4306	n:660000
Cons ci ratio: 1.955148e-03	ci left: 8.581292e-01	ci right 8.598101e-01	k: 566921	n:660000
KS ci ratio: 1.412763e-01	ci left: 1.082827e-03	ci right 1.248874e-03	k: 768	n:660000
WNT11   660000 perm   306 sec   (2156 perm/sec)   p_kst 1.163636e-03   p_cons 8.589712e-01   p_joint 6.524242e-03

Joint ci ratio: 5.909817e-02	ci left: 6.331028e-03	ci right 6.718033e-03	k: 4370	n:670000
Cons ci ratio: 1.940272e-03	ci left: 8.581644e-01	ci right 8.598325e-01	k: 575530	n:670000
KS ci ratio: 1.405475e-01	ci left: 1.078184e-03	ci right 1.242596e-03	k: 776	n:670000
WNT11   670000 perm   313 sec   (2137 perm/sec)   p_kst 1.158209e-03   p_cons 8.590000e-01   p_joint 6.522388e-03

Joint ci ratio: 5.875032e-02	ci left: 6.313267e-03	ci right 6.696838e-03	k: 4422	n:680000
Cons ci ratio: 1.926093e-03	ci left: 8.581529e-01	ci right 8.598088e-01	k: 584108	n:680000
KS ci ratio: 1.395632e-01	ci left: 1.077938e-03	ci right 1.241065e-03	k: 787	n:680000
WNT11   680000 perm   321 sec   (2119 perm/sec)   p_kst 1.157353e-03   p_cons 8.589824e-01   p_joint 6.502941e-03

Joint ci ratio: 5.825152e-02	ci left: 6.330306e-03	ci right 6.711536e-03	k: 4498	n:690000
Cons ci ratio: 1.911590e-03	ci left: 8.582216e-01	ci right 8.598652e-01	k: 592741	n:690000
KS ci ratio: 1.380811e-01	ci left: 1.086098e-03	ci right 1.248571e-03	k: 804	n:690000
WNT11   690000 perm   328 sec   (2103 perm/sec)   p_kst 1.165217e-03   p_cons 8.590449e-01   p_joint 6.518841e-03

Joint ci ratio: 5.780337e-02	ci left: 6.338423e-03	ci right 6.717107e-03	k: 4568	n:700000
Cons ci ratio: 1.897803e-03	ci left: 8.582384e-01	ci right 8.598701e-01	k: 601339	n:700000
KS ci ratio: 1.372316e-01	ci left: 1.084376e-03	ci right 1.245512e-03	k: 814	n:700000
WNT11   700000 perm   335 sec   (2087 perm/sec)   p_kst 1.162857e-03   p_cons 8.590557e-01   p_joint 6.525714e-03

Joint ci ratio: 6.210312e-02	ci left: 5.406937e-03	ci right 5.754862e-03	k: 3961	n:710000
Cons ci ratio: 1.884298e-03	ci left: 8.582561e-01	ci right 8.598762e-01	k: 609938	n:710000
KS ci ratio: 1.365633e-01	ci left: 1.079985e-03	ci right 1.239623e-03	k: 822	n:710000
WNT11   710000 perm   343 sec   (2072 perm/sec)   p_kst 1.157746e-03   p_cons 8.590676e-01   p_joint 5.578873e-03

Joint ci ratio: 5.694335e-02	ci left: 6.352643e-03	ci right 6.726344e-03	k: 4707	n:720000
Cons ci ratio: 1.870594e-03	ci left: 8.583360e-01	ci right 8.599445e-01	k: 618582	n:720000
KS ci ratio: 1.355784e-01	ci left: 1.081084e-03	ci right 1.239640e-03	k: 834	n:720000
WNT11   720000 perm   350 sec   (2058 perm/sec)   p_kst 1.158333e-03   p_cons 8.591417e-01   p_joint 6.537500e-03

Joint ci ratio: 6.126619e-02	ci left: 5.405814e-03	ci right 5.748813e-03	k: 4070	n:730000
Cons ci ratio: 1.858289e-03	ci left: 8.582696e-01	ci right 8.598673e-01	k: 627121	n:730000
KS ci ratio: 1.347739e-01	ci left: 1.079510e-03	ci right 1.236820e-03	k: 844	n:730000
WNT11   730000 perm   358 sec   (2041 perm/sec)   p_kst 1.156164e-03   p_cons 8.590699e-01   p_joint 5.575342e-03

Joint ci ratio: 6.078248e-02	ci left: 5.419261e-03	ci right 5.760303e-03	k: 4135	n:740000
Cons ci ratio: 1.845501e-03	ci left: 8.582998e-01	ci right 8.598866e-01	k: 635730	n:740000
KS ci ratio: 1.336709e-01	ci left: 1.083206e-03	ci right 1.239660e-03	k: 858	n:740000
WNT11   740000 perm   366 sec   (2024 perm/sec)   p_kst 1.159459e-03   p_cons 8.590946e-01   p_joint 5.587838e-03

Joint ci ratio: 6.031005e-02	ci left: 5.432360e-03	ci right 5.771476e-03	k: 4200	n:750000
Cons ci ratio: 1.832874e-03	ci left: 8.583426e-01	ci right 8.599186e-01	k: 644349	n:750000
KS ci ratio: 1.322160e-01	ci left: 1.093254e-03	ci right 1.249306e-03	k: 877	n:750000
WNT11   750000 perm   374 sec   (2006 perm/sec)   p_kst 1.169333e-03   p_cons 8.591320e-01   p_joint 5.600000e-03

Joint ci ratio: 5.991206e-02	ci left: 5.433458e-03	ci right 5.770327e-03	k: 4256	n:760000
Cons ci ratio: 1.821194e-03	ci left: 8.582920e-01	ci right 8.598579e-01	k: 652898	n:760000
KS ci ratio: 1.314696e-01	ci left: 1.091593e-03	ci right 1.246460e-03	k: 887	n:760000
WNT11   760000 perm   382 sec   (1990 perm/sec)   p_kst 1.167105e-03   p_cons 8.590763e-01   p_joint 5.600000e-03

Joint ci ratio: 5.957743e-02	ci left: 5.424299e-03	ci right 5.758657e-03	k: 4304	n:770000
Cons ci ratio: 1.809405e-03	ci left: 8.582871e-01	ci right 8.598427e-01	k: 661481	n:770000
KS ci ratio: 1.308086e-01	ci left: 1.088722e-03	ci right 1.242344e-03	k: 896	n:770000
WNT11   770000 perm   390 sec   (1974 perm/sec)   p_kst 1.163636e-03   p_cons 8.590662e-01   p_joint 5.589610e-03

Joint ci ratio: 5.920050e-02	ci left: 5.424223e-03	ci right 5.756388e-03	k: 4359	n:780000
Cons ci ratio: 1.798022e-03	ci left: 8.582578e-01	ci right 8.598036e-01	k: 670045	n:780000
KS ci ratio: 1.297994e-01	ci left: 1.092127e-03	ci right 1.244949e-03	k: 910	n:780000
WNT11   780000 perm   398 sec   (1961 perm/sec)   p_kst 1.166667e-03   p_cons 8.590321e-01   p_joint 5.588462e-03

Joint ci ratio: 5.885745e-02	ci left: 5.419165e-03	ci right 5.749033e-03	k: 4410	n:790000
Cons ci ratio: 1.787291e-03	ci left: 8.581697e-01	ci right 8.597061e-01	k: 678562	n:790000
KS ci ratio: 1.292336e-01	ci left: 1.088101e-03	ci right 1.239645e-03	k: 918	n:790000
WNT11   790000 perm   406 sec   (1943 perm/sec)   p_kst 1.162025e-03   p_cons 8.589392e-01   p_joint 5.582278e-03

Joint ci ratio: 5.398544e-02	ci left: 6.370699e-03	ci right 6.725389e-03	k: 5237	n:800000
Cons ci ratio: 1.775960e-03	ci left: 8.581916e-01	ci right 8.597183e-01	k: 687165	n:800000
KS ci ratio: 1.284670e-01	ci left: 1.087807e-03	ci right 1.238343e-03	k: 929	n:800000
WNT11   800000 perm   415 sec   (1928 perm/sec)   p_kst 1.161250e-03   p_cons 8.589562e-01   p_joint 6.546250e-03

Joint ci ratio: 5.804676e-02	ci left: 5.436209e-03	ci right 5.762404e-03	k: 4534	n:810000
Cons ci ratio: 1.765086e-03	ci left: 8.581796e-01	ci right 8.596969e-01	k: 695741	n:810000
KS ci ratio: 1.277140e-01	ci left: 1.087522e-03	ci right 1.237070e-03	k: 940	n:810000
WNT11   810000 perm   423 sec   (1914 perm/sec)   p_kst 1.160494e-03   p_cons 8.589395e-01   p_joint 5.597531e-03

Joint ci ratio: 5.771062e-02	ci left: 5.433613e-03	ci right 5.757700e-03	k: 4587	n:820000
Cons ci ratio: 1.754002e-03	ci left: 8.582241e-01	ci right 8.597319e-01	k: 704363	n:820000
KS ci ratio: 1.267079e-01	ci left: 1.091970e-03	ci right 1.240858e-03	k: 955	n:820000
WNT11   820000 perm   431 sec   (1903 perm/sec)   p_kst 1.164634e-03   p_cons 8.589793e-01   p_joint 5.593902e-03

Joint ci ratio: 5.739891e-02	ci left: 5.427521e-03	ci right 5.749438e-03	k: 4637	n:830000
Cons ci ratio: 1.743514e-03	ci left: 8.582132e-01	ci right 8.597120e-01	k: 712940	n:830000
KS ci ratio: 1.261158e-01	ci left: 1.089315e-03	ci right 1.237094e-03	k: 964	n:830000
WNT11   830000 perm   439 sec   (1890 perm/sec)   p_kst 1.161446e-03   p_cons 8.589639e-01   p_joint 5.586747e-03

Joint ci ratio: 5.707383e-02	ci left: 5.425100e-03	ci right 5.744991e-03	k: 4690	n:840000
Cons ci ratio: 1.733426e-03	ci left: 8.581728e-01	ci right 8.596628e-01	k: 721492	n:840000
KS ci ratio: 1.252106e-01	ci left: 1.092489e-03	ci right 1.239557e-03	k: 978	n:840000
WNT11   840000 perm   447 sec   (1879 perm/sec)   p_kst 1.164286e-03   p_cons 8.589190e-01   p_joint 5.583333e-03

Joint ci ratio: 5.673017e-02	ci left: 5.427380e-03	ci right 5.745416e-03	k: 4747	n:850000
Cons ci ratio: 1.722674e-03	ci left: 8.582513e-01	ci right 8.597322e-01	k: 730144	n:850000
KS ci ratio: 1.246392e-01	ci left: 1.089894e-03	ci right 1.235893e-03	k: 987	n:850000
WNT11   850000 perm   456 sec   (1866 perm/sec)   p_kst 1.161176e-03   p_cons 8.589929e-01   p_joint 5.584706e-03

Joint ci ratio: 5.650510e-02	ci left: 5.407830e-03	ci right 5.723422e-03	k: 4785	n:860000
Cons ci ratio: 1.713056e-03	ci left: 8.581951e-01	ci right 8.596676e-01	k: 738682	n:860000
KS ci ratio: 1.243255e-01	ci left: 1.082853e-03	ci right 1.227517e-03	k: 992	n:860000
WNT11   860000 perm   469 sec   (1833 perm/sec)   p_kst 1.153488e-03   p_cons 8.589326e-01   p_joint 5.563953e-03

Joint ci ratio: 5.615406e-02	ci left: 5.413665e-03	ci right 5.727571e-03	k: 4845	n:870000
Cons ci ratio: 1.703895e-03	ci left: 8.580976e-01	ci right 8.595621e-01	k: 747183	n:870000
KS ci ratio: 1.235195e-01	ci left: 1.084886e-03	ci right 1.228813e-03	k: 1005	n:870000
WNT11   870000 perm   481 sec   (1810 perm/sec)   p_kst 1.155172e-03   p_cons 8.588310e-01   p_joint 5.568966e-03

Joint ci ratio: 5.582093e-02	ci left: 5.417133e-03	ci right 5.729317e-03	k: 4903	n:880000
Cons ci ratio: 1.693760e-03	ci left: 8.581629e-01	ci right 8.596188e-01	k: 755825	n:880000
KS ci ratio: 1.223688e-01	ci left: 1.093485e-03	ci right 1.237104e-03	k: 1024	n:880000
WNT11   880000 perm   489 sec   (1798 perm/sec)   p_kst 1.163636e-03   p_cons 8.588920e-01   p_joint 5.571591e-03

Joint ci ratio: 5.548804e-02	ci left: 5.421636e-03	ci right 5.732157e-03	k: 4962	n:890000
Cons ci ratio: 1.683967e-03	ci left: 8.582032e-01	ci right 8.596507e-01	k: 764446	n:890000
KS ci ratio: 1.216000e-01	ci left: 1.095360e-03	ci right 1.238256e-03	k: 1037	n:890000
WNT11   890000 perm   499 sec   (1782 perm/sec)   p_kst 1.165169e-03   p_cons 8.589281e-01   p_joint 5.575281e-03

Joint ci ratio: 5.513344e-02	ci left: 5.431524e-03	ci right 5.740560e-03	k: 5026	n:900000
Cons ci ratio: 1.674242e-03	ci left: 8.582570e-01	ci right 8.596962e-01	k: 773080	n:900000
KS ci ratio: 1.208456e-01	ci left: 1.097196e-03	ci right 1.239379e-03	k: 1050	n:900000
WNT11   900000 perm   508 sec   (1770 perm/sec)   p_kst 1.166667e-03   p_cons 8.589778e-01   p_joint 5.584444e-03

Joint ci ratio: 5.479638e-02	ci left: 5.439033e-03	ci right 5.746544e-03	k: 5088	n:910000
Cons ci ratio: 1.665160e-03	ci left: 8.582403e-01	ci right 8.596717e-01	k: 781651	n:910000
KS ci ratio: 1.203316e-01	ci left: 1.094730e-03	ci right 1.235948e-03	k: 1059	n:910000
WNT11   910000 perm   517 sec   (1759 perm/sec)   p_kst 1.163736e-03   p_cons 8.589571e-01   p_joint 5.591209e-03

Joint ci ratio: 5.455068e-02	ci left: 5.429229e-03	ci right 5.734766e-03	k: 5134	n:920000
Cons ci ratio: 1.655562e-03	ci left: 8.583209e-01	ci right 8.597442e-01	k: 790311	n:920000
KS ci ratio: 1.199366e-01	ci left: 1.090211e-03	ci right 1.230352e-03	k: 1066	n:920000
WNT11   920000 perm   526 sec   (1749 perm/sec)   p_kst 1.158696e-03   p_cons 8.590337e-01   p_joint 5.580435e-03

Joint ci ratio: 5.425564e-02	ci left: 5.430246e-03	ci right 5.734136e-03	k: 5190	n:930000
Cons ci ratio: 1.646457e-03	ci left: 8.583514e-01	ci right 8.597668e-01	k: 798926	n:930000
KS ci ratio: 1.193786e-01	ci left: 1.088919e-03	ci right 1.228196e-03	k: 1076	n:930000
WNT11   930000 perm   534 sec   (1740 perm/sec)   p_kst 1.156989e-03   p_cons 8.590602e-01   p_joint 5.580645e-03

Joint ci ratio: 5.395499e-02	ci left: 5.433345e-03	ci right 5.735671e-03	k: 5248	n:940000
Cons ci ratio: 1.638155e-03	ci left: 8.582842e-01	ci right 8.596924e-01	k: 807450	n:940000
KS ci ratio: 1.188830e-01	ci left: 1.086624e-03	ci right 1.224990e-03	k: 1085	n:940000
WNT11   940000 perm   544 sec   (1729 perm/sec)   p_kst 1.154255e-03   p_cons 8.589894e-01   p_joint 5.582979e-03

Joint ci ratio: 5.365928e-02	ci left: 5.436384e-03	ci right 5.737169e-03	k: 5306	n:950000
Cons ci ratio: 1.629686e-03	ci left: 8.582616e-01	ci right 8.596625e-01	k: 816015	n:950000
KS ci ratio: 1.183395e-01	ci left: 1.085400e-03	ci right 1.222934e-03	k: 1095	n:950000
WNT11   950000 perm   553 sec   (1718 perm/sec)   p_kst 1.152632e-03   p_cons 8.589632e-01   p_joint 5.585263e-03

Joint ci ratio: 4.928016e-02	ci left: 6.386519e-03	ci right 6.710219e-03	k: 6285	n:960000
Cons ci ratio: 1.621529e-03	ci left: 8.582125e-01	ci right 8.596062e-01	k: 824554	n:960000
KS ci ratio: 1.178034e-01	ci left: 1.084202e-03	ci right 1.220919e-03	k: 1105	n:960000
WNT11   960000 perm   562 sec   (1709 perm/sec)   p_kst 1.151042e-03   p_cons 8.589104e-01   p_joint 6.546875e-03

Joint ci ratio: 4.900793e-02	ci left: 6.391957e-03	ci right 6.714093e-03	k: 6355	n:970000
Cons ci ratio: 1.612923e-03	ci left: 8.582501e-01	ci right 8.596365e-01	k: 833176	n:970000
KS ci ratio: 1.172220e-01	ci left: 1.084032e-03	ci right 1.220006e-03	k: 1116	n:970000
WNT11   970000 perm   571 sec   (1700 perm/sec)   p_kst 1.150515e-03   p_cons 8.589443e-01   p_joint 6.551546e-03

Joint ci ratio: 5.278114e-02	ci left: 5.449181e-03	ci right 5.745590e-03	k: 5484	n:980000
Cons ci ratio: 1.604277e-03	ci left: 8.583135e-01	ci right 8.596926e-01	k: 841824	n:980000
KS ci ratio: 1.167009e-01	ci left: 1.082876e-03	ci right 1.218059e-03	k: 1126	n:980000
WNT11   980000 perm   580 sec   (1690 perm/sec)   p_kst 1.148980e-03   p_cons 8.590041e-01   p_joint 5.595918e-03

Joint ci ratio: 4.853317e-02	ci left: 6.387549e-03	ci right 6.706257e-03	k: 6480	n:990000
Cons ci ratio: 1.596314e-03	ci left: 8.582927e-01	ci right 8.596648e-01	k: 850390	n:990000
KS ci ratio: 1.158809e-01	ci left: 1.087629e-03	ci right 1.222387e-03	k: 1142	n:990000
WNT11   990000 perm   589 sec   (1680 perm/sec)   p_kst 1.153535e-03   p_cons 8.589798e-01   p_joint 6.545455e-03

Joint ci ratio: 4.826194e-02	ci left: 6.395791e-03	ci right 6.713077e-03	k: 6553	n:1000000
Cons ci ratio: 1.588390e-03	ci left: 8.582843e-01	ci right 8.596496e-01	k: 858968	n:1000000
KS ci ratio: 1.153273e-01	ci left: 1.087435e-03	ci right 1.221481e-03	k: 1153	n:1000000
WNT11   1000000 perm   598 sec   (1671 perm/sec)   p_kst 1.153000e-03   p_cons 8.589680e-01   p_joint 6.553000e-03

Joint ci ratio: 4.803536e-02	ci left: 6.393113e-03	ci right 6.708737e-03	k: 6615	n:1010000
Cons ci ratio: 1.580718e-03	ci left: 8.582553e-01	ci right 8.596140e-01	k: 867525	n:1010000
KS ci ratio: 1.147323e-01	ci left: 1.088208e-03	ci right 1.221610e-03	k: 1165	n:1010000
WNT11   1010000 perm   608 sec   (1662 perm/sec)   p_kst 1.153465e-03   p_cons 8.589356e-01   p_joint 6.549505e-03

Joint ci ratio: 4.779753e-02	ci left: 6.394366e-03	ci right 6.708446e-03	k: 6681	n:1020000
Cons ci ratio: 1.572971e-03	ci left: 8.582553e-01	ci right 8.596073e-01	k: 876111	n:1020000
KS ci ratio: 1.140495e-01	ci left: 1.090872e-03	ci right 1.223752e-03	k: 1179	n:1020000
WNT11   1020000 perm   617 sec   (1653 perm/sec)   p_kst 1.155882e-03   p_cons 8.589324e-01   p_joint 6.550000e-03

Joint ci ratio: 4.759871e-02	ci left: 6.386005e-03	ci right 6.698333e-03	k: 6737	n:1030000
Cons ci ratio: 1.565200e-03	ci left: 8.582768e-01	ci right 8.596222e-01	k: 884719	n:1030000
KS ci ratio: 1.135694e-01	ci left: 1.089713e-03	ci right 1.221856e-03	k: 1189	n:1030000
WNT11   1030000 perm   627 sec   (1642 perm/sec)   p_kst 1.154369e-03   p_cons 8.589505e-01   p_joint 6.540777e-03

Joint ci ratio: 4.732528e-02	ci left: 6.398712e-03	ci right 6.709815e-03	k: 6815	n:1040000
Cons ci ratio: 1.557153e-03	ci left: 8.583586e-01	ci right 8.596971e-01	k: 893390	n:1040000
KS ci ratio: 1.130953e-01	ci left: 1.088578e-03	ci right 1.219995e-03	k: 1199	n:1040000
WNT11   1040000 perm   637 sec   (1632 perm/sec)   p_kst 1.152885e-03   p_cons 8.590288e-01   p_joint 6.552885e-03

Joint ci ratio: 5.097305e-02	ci left: 5.458155e-03	ci right 5.744583e-03	k: 5880	n:1050000
Cons ci ratio: 1.549484e-03	ci left: 8.583987e-01	ci right 8.597307e-01	k: 902019	n:1050000
KS ci ratio: 1.123023e-01	ci left: 1.093945e-03	ci right 1.225022e-03	k: 1216	n:1050000
WNT11   1050000 perm   647 sec   (1624 perm/sec)   p_kst 1.158095e-03   p_cons 8.590657e-01   p_joint 5.600000e-03

Joint ci ratio: 5.075788e-02	ci left: 5.453232e-03	ci right 5.738159e-03	k: 5930	n:1060000
Cons ci ratio: 1.542258e-03	ci left: 8.583861e-01	ci right 8.597119e-01	k: 910593	n:1060000
KS ci ratio: 1.119352e-01	ci left: 1.090960e-03	ci right 1.221224e-03	k: 1224	n:1060000
WNT11   1060000 perm   656 sec   (1615 perm/sec)   p_kst 1.154717e-03   p_cons 8.590500e-01   p_joint 5.594340e-03

Joint ci ratio: 5.049026e-02	ci left: 5.460401e-03	ci right 5.744154e-03	k: 5993	n:1070000
Cons ci ratio: 1.534818e-03	ci left: 8.584234e-01	ci right 8.597429e-01	k: 919220	n:1070000
KS ci ratio: 1.113909e-01	ci left: 1.091666e-03	ci right 1.221339e-03	k: 1236	n:1070000
WNT11   1070000 perm   666 sec   (1606 perm/sec)   p_kst 1.155140e-03   p_cons 8.590841e-01   p_joint 5.600935e-03

Joint ci ratio: 4.645104e-02	ci left: 6.398726e-03	ci right 6.703929e-03	k: 7074	n:1080000
Cons ci ratio: 1.527648e-03	ci left: 8.584341e-01	ci right 8.597473e-01	k: 927819	n:1080000
KS ci ratio: 1.109880e-01	ci left: 1.089659e-03	ci right 1.218595e-03	k: 1245	n:1080000
WNT11   1080000 perm   676 sec   (1597 perm/sec)   p_kst 1.152778e-03   p_cons 8.590917e-01   p_joint 6.550000e-03

Joint ci ratio: 4.622936e-02	ci left: 6.401685e-03	ci right 6.705533e-03	k: 7142	n:1090000
Cons ci ratio: 1.520445e-03	ci left: 8.584657e-01	ci right 8.597728e-01	k: 936441	n:1090000
KS ci ratio: 1.105454e-01	ci left: 1.088583e-03	ci right 1.216844e-03	k: 1255	n:1090000
WNT11   1090000 perm   686 sec   (1588 perm/sec)   p_kst 1.151376e-03   p_cons 8.591202e-01   p_joint 6.552294e-03

Joint ci ratio: 4.603010e-02	ci left: 6.399201e-03	ci right 6.701588e-03	k: 7204	n:1100000
Cons ci ratio: 1.513406e-03	ci left: 8.584867e-01	ci right 8.597878e-01	k: 945052	n:1100000
KS ci ratio: 1.099776e-01	ci left: 1.090179e-03	ci right 1.217926e-03	k: 1268	n:1100000
WNT11   1100000 perm   696 sec   (1580 perm/sec)   p_kst 1.152727e-03   p_cons 8.591382e-01   p_joint 6.549091e-03

Joint ci ratio: 4.582070e-02	ci left: 6.400328e-03	ci right 6.701355e-03	k: 7270	n:1110000
Cons ci ratio: 1.506733e-03	ci left: 8.584640e-01	ci right 8.597593e-01	k: 953615	n:1110000
KS ci ratio: 1.095041e-01	ci left: 1.089995e-03	ci right 1.217135e-03	k: 1279	n:1110000
WNT11   1110000 perm   706 sec   (1572 perm/sec)   p_kst 1.152252e-03   p_cons 8.591126e-01   p_joint 6.549550e-03

Joint ci ratio: 4.560162e-02	ci left: 6.404968e-03	ci right 6.704735e-03	k: 7340	n:1120000
Cons ci ratio: 1.499975e-03	ci left: 8.584695e-01	ci right 8.597590e-01	k: 962209	n:1120000
KS ci ratio: 1.089521e-01	ci left: 1.091553e-03	ci right 1.218192e-03	k: 1292	n:1120000
WNT11   1120000 perm   716 sec   (1564 perm/sec)   p_kst 1.153571e-03   p_cons 8.591152e-01   p_joint 6.553571e-03

Joint ci ratio: 4.535487e-02	ci left: 6.418279e-03	ci right 6.717002e-03	k: 7420	n:1130000
Cons ci ratio: 1.493242e-03	ci left: 8.584855e-01	ci right 8.597693e-01	k: 970815	n:1130000
KS ci ratio: 1.084500e-01	ci left: 1.092224e-03	ci right 1.218320e-03	k: 1304	n:1130000
WNT11   1130000 perm   726 sec   (1556 perm/sec)   p_kst 1.153982e-03   p_cons 8.591283e-01   p_joint 6.566372e-03

Joint ci ratio: 4.515451e-02	ci left: 6.419218e-03	ci right 6.716631e-03	k: 7486	n:1140000
Cons ci ratio: 1.486723e-03	ci left: 8.584811e-01	ci right 8.597592e-01	k: 979398	n:1140000
KS ci ratio: 1.079548e-01	ci left: 1.092885e-03	ci right 1.218444e-03	k: 1316	n:1140000
WNT11   1140000 perm   737 sec   (1547 perm/sec)   p_kst 1.154386e-03   p_cons 8.591211e-01   p_joint 6.566667e-03

Joint ci ratio: 4.493882e-02	ci left: 6.425303e-03	ci right 6.721538e-03	k: 7558	n:1150000
Cons ci ratio: 1.480257e-03	ci left: 8.584819e-01	ci right 8.597545e-01	k: 987987	n:1150000
KS ci ratio: 1.075068e-01	ci left: 1.092689e-03	ci right 1.217671e-03	k: 1327	n:1150000
WNT11   1150000 perm   747 sec   (1539 perm/sec)   p_kst 1.153913e-03   p_cons 8.591191e-01   p_joint 6.572174e-03

Joint ci ratio: 4.470850e-02	ci left: 6.436401e-03	ci right 6.731588e-03	k: 7636	n:1160000
Cons ci ratio: 1.473680e-03	ci left: 8.585148e-01	ci right 8.597817e-01	k: 996613	n:1160000
KS ci ratio: 1.071044e-01	ci left: 1.091658e-03	ci right 1.216026e-03	k: 1337	n:1160000
WNT11   1160000 perm   758 sec   (1531 perm/sec)   p_kst 1.152586e-03   p_cons 8.591491e-01   p_joint 6.582759e-03

Joint ci ratio: 4.453402e-02	ci left: 6.432098e-03	ci right 6.725908e-03	k: 7696	n:1170000
Cons ci ratio: 1.467811e-03	ci left: 8.584443e-01	ci right 8.597061e-01	k: 1005119	n:1170000
KS ci ratio: 1.067461e-01	ci left: 1.089815e-03	ci right 1.213531e-03	k: 1346	n:1170000
WNT11   1170000 perm   768 sec   (1523 perm/sec)   p_kst 1.150427e-03   p_cons 8.590761e-01   p_joint 6.577778e-03

Joint ci ratio: 4.433568e-02	ci left: 6.435414e-03	ci right 6.728032e-03	k: 7765	n:1180000
Cons ci ratio: 1.461715e-03	ci left: 8.584243e-01	ci right 8.596808e-01	k: 1013683	n:1180000
KS ci ratio: 1.061565e-01	ci left: 1.092952e-03	ci right 1.216297e-03	k: 1361	n:1180000
WNT11   1180000 perm   779 sec   (1516 perm/sec)   p_kst 1.153390e-03   p_cons 8.590534e-01   p_joint 6.580508e-03

Joint ci ratio: 4.413996e-02	ci left: 6.438677e-03	ci right 6.730119e-03	k: 7834	n:1190000
Cons ci ratio: 1.455644e-03	ci left: 8.584130e-01	ci right 8.596643e-01	k: 1022257	n:1190000
KS ci ratio: 1.056919e-01	ci left: 1.093585e-03	ci right 1.216427e-03	k: 1373	n:1190000
WNT11   1190000 perm   789 sec   (1508 perm/sec)   p_kst 1.153782e-03   p_cons 8.590395e-01   p_joint 6.583193e-03

Joint ci ratio: 4.395521e-02	ci left: 6.439416e-03	ci right 6.729640e-03	k: 7900	n:1200000
Cons ci ratio: 1.449583e-03	ci left: 8.584128e-01	ci right 8.596588e-01	k: 1030844	n:1200000
KS ci ratio: 1.053475e-01	ci left: 1.091774e-03	ci right 1.213988e-03	k: 1382	n:1200000
WNT11   1200000 perm   801 sec   (1499 perm/sec)   p_kst 1.151667e-03   p_cons 8.590367e-01   p_joint 6.583333e-03

Joint ci ratio: 4.376171e-02	ci left: 6.443415e-03	ci right 6.732508e-03	k: 7970	n:1210000
Cons ci ratio: 1.443607e-03	ci left: 8.584109e-01	ci right 8.596518e-01	k: 1039429	n:1210000
KS ci ratio: 1.050443e-01	ci left: 1.089188e-03	ci right 1.210741e-03	k: 1390	n:1210000
WNT11   1210000 perm   812 sec   (1491 perm/sec)   p_kst 1.148760e-03   p_cons 8.590322e-01   p_joint 6.586777e-03

Joint ci ratio: 4.360897e-02	ci left: 6.436000e-03	ci right 6.723727e-03	k: 8026	n:1220000
Cons ci ratio: 1.437690e-03	ci left: 8.584116e-01	ci right 8.596474e-01	k: 1048017	n:1220000
KS ci ratio: 1.044080e-01	ci left: 1.093830e-03	ci right 1.215116e-03	k: 1407	n:1220000
WNT11   1220000 perm   823 sec   (1483 perm/sec)   p_kst 1.153279e-03   p_cons 8.590303e-01   p_joint 6.578689e-03

Joint ci ratio: 4.343078e-02	ci left: 6.436749e-03	ci right 6.723305e-03	k: 8092	n:1230000
Cons ci ratio: 1.432037e-03	ci left: 8.583796e-01	ci right 8.596105e-01	k: 1056565	n:1230000
KS ci ratio: 1.038561e-01	ci left: 1.096815e-03	ci right 1.217749e-03	k: 1422	n:1230000
WNT11   1230000 perm   834 sec   (1475 perm/sec)   p_kst 1.156098e-03   p_cons 8.589959e-01   p_joint 6.578862e-03

Joint ci ratio: 4.323876e-02	ci left: 6.442276e-03	ci right 6.727778e-03	k: 8164	n:1240000
Cons ci ratio: 1.426118e-03	ci left: 8.584048e-01	ci right 8.596306e-01	k: 1065183	n:1240000
KS ci ratio: 1.034209e-01	ci left: 1.097396e-03	ci right 1.217857e-03	k: 1434	n:1240000
WNT11   1240000 perm   845 sec   (1467 perm/sec)   p_kst 1.156452e-03   p_cons 8.590185e-01   p_joint 6.583871e-03

Joint ci ratio: 4.305979e-02	ci left: 6.444551e-03	ci right 6.728943e-03	k: 8232	n:1250000
Cons ci ratio: 1.420487e-03	ci left: 8.583927e-01	ci right 8.596137e-01	k: 1073755	n:1250000
KS ci ratio: 1.029200e-01	ci left: 1.099528e-03	ci right 1.219603e-03	k: 1448	n:1250000
WNT11   1250000 perm   856 sec   (1460 perm/sec)   p_kst 1.158400e-03   p_cons 8.590040e-01   p_joint 6.585600e-03

Joint ci ratio: 4.291426e-02	ci left: 6.437370e-03	ci right 6.720461e-03	k: 8288	n:1260000
Cons ci ratio: 1.414612e-03	ci left: 8.584340e-01	ci right 8.596500e-01	k: 1082394	n:1260000
KS ci ratio: 1.026020e-01	ci left: 1.097761e-03	ci right 1.217250e-03	k: 1457	n:1260000
WNT11   1260000 perm   867 sec   (1453 perm/sec)   p_kst 1.156349e-03   p_cons 8.590429e-01   p_joint 6.577778e-03

Joint ci ratio: 4.277793e-02	ci left: 6.427966e-03	ci right 6.709724e-03	k: 8341	n:1270000
Cons ci ratio: 1.409006e-03	ci left: 8.584408e-01	ci right 8.596520e-01	k: 1090990	n:1270000
KS ci ratio: 1.022171e-01	ci left: 1.097556e-03	ci right 1.216548e-03	k: 1468	n:1270000
WNT11   1270000 perm   878 sec   (1446 perm/sec)   p_kst 1.155906e-03   p_cons 8.590472e-01   p_joint 6.567717e-03

Joint ci ratio: 4.262756e-02	ci left: 6.423349e-03	ci right 6.703891e-03	k: 8400	n:1280000
Cons ci ratio: 1.403688e-03	ci left: 8.584092e-01	ci right 8.596157e-01	k: 1099537	n:1280000
KS ci ratio: 1.018366e-01	ci left: 1.097356e-03	ci right 1.215857e-03	k: 1479	n:1280000
WNT11   1280000 perm   889 sec   (1439 perm/sec)   p_kst 1.155469e-03   p_cons 8.590133e-01   p_joint 6.562500e-03

Joint ci ratio: 4.246362e-02	ci left: 6.423407e-03	ci right 6.702846e-03	k: 8465	n:1290000
Cons ci ratio: 1.398157e-03	ci left: 8.584254e-01	ci right 8.596272e-01	k: 1108145	n:1290000
KS ci ratio: 1.014943e-01	ci left: 1.096404e-03	ci right 1.214381e-03	k: 1489	n:1290000
WNT11   1290000 perm   901 sec   (1432 perm/sec)   p_kst 1.154264e-03   p_cons 8.590271e-01   p_joint 6.562016e-03

Joint ci ratio: 4.230155e-02	ci left: 6.423467e-03	ci right 6.701815e-03	k: 8530	n:1300000
Cons ci ratio: 1.392572e-03	ci left: 8.584622e-01	ci right 8.596593e-01	k: 1116780	n:1300000
KS ci ratio: 1.012231e-01	ci left: 1.093968e-03	ci right 1.211349e-03	k: 1497	n:1300000
WNT11   1300000 perm   912 sec   (1426 perm/sec)   p_kst 1.151538e-03   p_cons 8.590615e-01   p_joint 6.561538e-03

Joint ci ratio: 4.212406e-02	ci left: 6.428815e-03	ci right 6.706198e-03	k: 8602	n:1310000
Cons ci ratio: 1.387175e-03	ci left: 8.584770e-01	ci right 8.596695e-01	k: 1125387	n:1310000
KS ci ratio: 1.008201e-01	ci left: 1.094546e-03	ci right 1.211494e-03	k: 1509	n:1310000
WNT11   1310000 perm   923 sec   (1419 perm/sec)   p_kst 1.151908e-03   p_cons 8.590740e-01   p_joint 6.566412e-03

Joint ci ratio: 4.196339e-02	ci left: 6.429586e-03	ci right 6.705919e-03	k: 8668	n:1320000
Cons ci ratio: 1.381887e-03	ci left: 8.584833e-01	ci right 8.596712e-01	k: 1133983	n:1320000
KS ci ratio: 1.003229e-01	ci left: 1.097332e-03	ci right 1.213965e-03	k: 1524	n:1320000
WNT11   1320000 perm   935 sec   (1411 perm/sec)   p_kst 1.154545e-03   p_cons 8.590780e-01   p_joint 6.566667e-03

Joint ci ratio: 4.184073e-02	ci left: 6.419187e-03	ci right 6.694247e-03	k: 8719	n:1330000
Cons ci ratio: 1.376570e-03	ci left: 8.585053e-01	ci right 8.596886e-01	k: 1142600	n:1330000
KS ci ratio: 9.999561e-02	ci left: 1.096412e-03	ci right 1.212545e-03	k: 1534	n:1330000
WNT11   1330000 perm   947 sec   (1404 perm/sec)   p_kst 1.153383e-03   p_cons 8.590977e-01   p_joint 6.555639e-03

Outputting figure to mutsig2_images.part000000000191/WNT11.2_1085_1330000_0.0011534_0.8591_0.0065556.png
                gene_name: WNT11
               theta_stop: 0.100 
                    nperm: 1330000 
                     p_ks: 0.0012 
        ci_ks_bounds_left: 0.0011 
       ci_ks_bounds_right: 0.0012 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.0066 
     ci_joint_bounds_left: 0.0064 
    ci_joint_bounds_right: 0.0067 

Current progress: 33 percent done.
XIRP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.911097e-02	ci left: 6.350273e-01	ci right 6.538884e-01	k: 6445	n:10000
Cons ci ratio: 9.103792e-02	ci left: 1.492334e-01	ci right 1.635673e-01	k: 1563	n:10000
KS ci ratio: 1.561441e-02	ci left: 8.562070e-01	ci right 8.697808e-01	k: 8631	n:10000
XIRP1   10000 perm   2 sec   (4745 perm/sec)   p_kst 8.631000e-01   p_cons 1.563000e-01   p_joint 6.445000e-01

Outputting figure to mutsig2_images.part000000000191/XIRP1.2_5536_10000_0.8631_0.1563_0.6445.png
                gene_name: XIRP1
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.65 

Current progress: 67 percent done.
XIRP2
Processing conservation and coverage...
81% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.192588e-01	ci left: 9.165653e-02	ci right 1.033791e-01	k: 974	n:10000
Cons ci ratio: 2.034267e-01	ci left: 3.214923e-02	ci right 3.952436e-02	k: 357	n:10000
KS ci ratio: 1.962522e-02	ci left: 7.916175e-01	ci right 8.074076e-01	k: 7996	n:10000
XIRP2   10000 perm   3 sec   (3530 perm/sec)   p_kst 7.996000e-01   p_cons 3.570000e-02   p_joint 9.740000e-02

Joint ci ratio: 1.011086e-01	ci left: 6.635513e-02	ci right 7.347052e-02	k: 1397	n:20000
Cons ci ratio: 1.465217e-01	ci left: 3.201345e-02	ci right 3.712302e-02	k: 690	n:20000
KS ci ratio: 1.405415e-02	ci left: 7.898424e-01	ci right 8.010716e-01	k: 15910	n:20000
XIRP2   20000 perm   6 sec   (3256 perm/sec)   p_kst 7.955000e-01   p_cons 3.450000e-02   p_joint 6.985000e-02

Joint ci ratio: 8.074826e-02	ci left: 6.988485e-02	ci right 7.579819e-02	k: 2184	n:30000
Cons ci ratio: 1.196653e-01	ci left: 3.246326e-02	ci right 3.662751e-02	k: 1035	n:30000
KS ci ratio: 1.148098e-02	ci left: 7.907227e-01	ci right 7.998867e-01	k: 23860	n:30000
XIRP2   30000 perm   10 sec   (3044 perm/sec)   p_kst 7.953333e-01   p_cons 3.450000e-02   p_joint 7.280000e-02

Joint ci ratio: 6.858537e-02	ci left: 7.290470e-02	ci right 7.810713e-02	k: 3019	n:40000
Cons ci ratio: 1.036465e-01	ci left: 3.273280e-02	ci right 3.633519e-02	k: 1380	n:40000
KS ci ratio: 9.926250e-03	ci left: 7.918912e-01	ci right 7.998158e-01	k: 31835	n:40000
XIRP2   40000 perm   14 sec   (2962 perm/sec)   p_kst 7.958750e-01   p_cons 3.450000e-02   p_joint 7.547500e-02

Joint ci ratio: 6.558656e-02	ci left: 6.448887e-02	ci right 6.888160e-02	k: 3333	n:50000
Cons ci ratio: 9.196895e-02	ci left: 3.344528e-02	ci right 3.668899e-02	k: 1752	n:50000
KS ci ratio: 8.889085e-03	ci left: 7.919174e-01	ci right 7.990082e-01	k: 39774	n:50000
XIRP2   50000 perm   17 sec   (2929 perm/sec)   p_kst 7.954800e-01   p_cons 3.504000e-02   p_joint 6.666000e-02

Outputting figure to mutsig2_images.part000000000191/XIRP2.2_12236_50000_0.79548_0.03504_0.06666.png
                gene_name: XIRP2
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.035 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.037 
                  p_joint: 0.067 
     ci_joint_bounds_left: 0.064 
    ci_joint_bounds_right: 0.069 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000191
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 191 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1647>
Subject: Job 9878373: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1647>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000192> was used as the working directory.
Started at Fri Oct  5 23:02:26 2012
Results reported at Sat Oct  6 01:59:57 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000192.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000192.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 192  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000192.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  10760.04 sec.
    Max Memory :      2040 MB
    Max Swap   :      4795 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
192
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 192
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 192: processing genes 17319 - 17409
Calculating significance of each gene.
Using projection method.
17319	XKR7	1
17320	XKR8	1
17321	XKR9	1
17322	XKRX	1
17323	XPA	1
17324	XPC	1
17325	XPNPEP1	1
17326	XPNPEP2	1
17327	XPNPEP3	1
17328	XPO1	1
17329	XPO4	3.194853e-01
17330	XPO5	1
17331	XPO6	2.210405e-01
17332	XPO7	1
17333	XPOT	1
17334	XPR1	1
17335	XRCC1	1
17336	XRCC2	1
17337	XRCC3	2.438902e-02
17338	XRCC4	1
17339	XRCC5	1
17340	XRCC6	2.885183e-03
17341	XRCC6BP1	1
17342	XRN1	1
17343	XRN2	1
17344	XRRA1	1.297431e-01
17345	XYLB	1
17346	XYLT1	1
17347	XYLT2	1
17348	YAF2	1
17349	YAP1	1
17350	YARS	1
17351	YARS2	4.143868e-02
17352	YBX1	1.485438e-04
17353	YBX2	1
17354	YDJC	1
17355	YEATS2	1
17356	YEATS4	1
17357	YES1	1
17358	YIF1A	1
17359	YIF1B	1
17360	YIPF1	1
17361	YIPF2	1
17362	YIPF3	1
17363	YIPF4	1
17364	YIPF5	1
17365	YIPF6	1
17366	YIPF7	1
17367	YJEFN3	1
17368	YKT6	1
17369	YLPM1	1
17370	YME1L1	1
17371	YOD1	1
17372	YPEL1	1
17373	YPEL2	1
17374	YPEL3	1
17375	YPEL4	1
17376	YPEL5	1
17377	YRDC	1
17378	YSK4	3.199269e-01
17379	YTHDC1	1
17380	YTHDC2	1
17381	YTHDF1	1
17382	YTHDF2	1
17383	YTHDF3	1
17384	YWHAB	1
17385	YWHAE	1
17386	YWHAG	1
17387	YWHAH	1
17388	YWHAQ	1
17389	YWHAZ	1
17390	YY1	1
17391	YY1AP1	1
17392	YY2	1
17393	ZACN	1
17394	ZADH2	1
17395	ZAK	1
17396	ZAN	2.884182e-01
17397	ZAP70	1
17398	ZAR1	1
17399	ZBBX	1.408013e-01
17400	ZBED1	1
17401	ZBED2	1
17402	ZBED4	1
17403	ZBP1	1
In gene ZBTB1 the following bins exceed PROBCAP:
    PRAD-CH-5769	categ 6	N = 2092    n = 1	mu =   9.08e-07
17404	ZBTB1	1.924250e-01
17405	ZBTB10	1
17406	ZBTB11	1
17407	ZBTB12	1
17408	ZBTB16	1
17409	ZBTB17	1.295240e-01
Done

Running MutSig 2:
Scatter job 192: processing genes 17319 - 17409
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
YBX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.884054e-01	ci left: 4.844389e-03	ci right 8.053335e-03	k: 63	n:10000
Cons ci ratio: 8.756181e-01	ci left: 1.144300e-03	ci right 2.965502e-03	k: 19	n:10000
KS ci ratio: 4.023926e-01	ci left: 7.512676e-03	ci right 1.138119e-02	k: 93	n:10000
YBX1   10000 perm   2 sec   (5534 perm/sec)   p_kst 9.300000e-03   p_cons 1.900000e-03   p_joint 6.300000e-03

Joint ci ratio: 4.970559e-01	ci left: 2.333787e-03	ci right 3.916152e-03	k: 61	n:20000
Cons ci ratio: 6.352878e-01	ci left: 1.302895e-03	ci right 2.549089e-03	k: 37	n:20000
KS ci ratio: 3.029783e-01	ci left: 7.043292e-03	ci right 9.602748e-03	k: 165	n:20000
YBX1   20000 perm   6 sec   (3303 perm/sec)   p_kst 8.250000e-03   p_cons 1.850000e-03   p_joint 3.050000e-03

Joint ci ratio: 2.880939e-01	ci left: 5.250338e-03	ci right 7.047323e-03	k: 183	n:30000
Cons ci ratio: 5.142149e-01	ci left: 1.439349e-03	ci right 2.460979e-03	k: 57	n:30000
KS ci ratio: 2.425193e-01	ci left: 7.586271e-03	ci right 9.710531e-03	k: 258	n:30000
YBX1   30000 perm   8 sec   (3709 perm/sec)   p_kst 8.600000e-03   p_cons 1.900000e-03   p_joint 6.100000e-03

Joint ci ratio: 3.514760e-01	ci left: 2.556258e-03	ci right 3.667820e-03	k: 123	n:40000
Cons ci ratio: 4.434141e-01	ci left: 1.519469e-03	ci right 2.405341e-03	k: 77	n:40000
KS ci ratio: 2.126320e-01	ci left: 7.528943e-03	ci right 9.343505e-03	k: 336	n:40000
YBX1   40000 perm   10 sec   (3928 perm/sec)   p_kst 8.400000e-03   p_cons 1.925000e-03   p_joint 3.075000e-03

Joint ci ratio: 3.308330e-01	ci left: 2.337566e-03	ci right 3.281630e-03	k: 139	n:50000
Cons ci ratio: 4.105495e-01	ci left: 1.447653e-03	ci right 2.212049e-03	k: 90	n:50000
KS ci ratio: 1.923253e-01	ci left: 7.447236e-03	ci right 9.050645e-03	k: 411	n:50000
YBX1   50000 perm   12 sec   (4048 perm/sec)   p_kst 8.220000e-03   p_cons 1.800000e-03   p_joint 2.780000e-03

Joint ci ratio: 3.165063e-01	ci left: 2.147007e-03	ci right 2.968956e-03	k: 152	n:60000
Cons ci ratio: 3.734115e-01	ci left: 1.491902e-03	ci right 2.191030e-03	k: 109	n:60000
KS ci ratio: 1.776453e-01	ci left: 7.334596e-03	ci right 8.780263e-03	k: 482	n:60000
YBX1   60000 perm   15 sec   (4111 perm/sec)   p_kst 8.033333e-03   p_cons 1.816667e-03   p_joint 2.533333e-03

Joint ci ratio: 4.249224e-01	ci left: 9.572764e-04	ci right 1.485469e-03	k: 84	n:70000
Cons ci ratio: 7.542535e-01	ci left: 2.426434e-04	ci right 5.441819e-04	k: 26	n:70000
KS ci ratio: 1.641012e-01	ci left: 7.421892e-03	ci right 8.762223e-03	k: 565	n:70000
YBX1   70000 perm   17 sec   (4135 perm/sec)   p_kst 8.071429e-03   p_cons 3.714286e-04   p_joint 1.200000e-03

Joint ci ratio: 5.190284e-01	ci left: 5.288145e-04	ci right 9.089132e-04	k: 56	n:80000
Cons ci ratio: 6.928217e-01	ci left: 2.633022e-04	ci right 5.499806e-04	k: 31	n:80000
KS ci ratio: 1.524206e-01	ci left: 7.574693e-03	ci right 8.836363e-03	k: 655	n:80000
YBX1   80000 perm   19 sec   (4132 perm/sec)   p_kst 8.187500e-03   p_cons 3.875000e-04   p_joint 7.000000e-04

Joint ci ratio: 5.101704e-01	ci left: 4.893889e-04	ci right 8.330153e-04	k: 58	n:90000
Cons ci ratio: 6.624684e-01	ci left: 2.616358e-04	ci right 5.278670e-04	k: 34	n:90000
KS ci ratio: 1.449968e-01	ci left: 7.471181e-03	ci right 8.649747e-03	k: 724	n:90000
YBX1   90000 perm   22 sec   (4124 perm/sec)   p_kst 8.044444e-03   p_cons 3.777778e-04   p_joint 6.444444e-04

Joint ci ratio: 6.928503e-01	ci left: 2.106394e-04	ci right 4.399916e-04	k: 31	n:100000
Cons ci ratio: 6.196794e-01	ci left: 2.773424e-04	ci right 5.331047e-04	k: 39	n:100000
KS ci ratio: 1.376039e-01	ci left: 7.495799e-03	ci right 8.613018e-03	k: 804	n:100000
YBX1   100000 perm   25 sec   (4078 perm/sec)   p_kst 8.040000e-03   p_cons 3.900000e-04   p_joint 3.100000e-04

Joint ci ratio: 7.155900e-01	ci left: 1.765683e-04	ci right 3.786040e-04	k: 29	n:110000
Cons ci ratio: 6.047509e-01	ci left: 2.674884e-04	ci right 5.056130e-04	k: 41	n:110000
KS ci ratio: 1.302034e-01	ci left: 7.640333e-03	ci right 8.713114e-03	k: 898	n:110000
YBX1   110000 perm   27 sec   (4046 perm/sec)   p_kst 8.163636e-03   p_cons 3.727273e-04   p_joint 2.636364e-04

Joint ci ratio: 7.686888e-01	ci left: 1.348267e-04	ci right 3.075258e-04	k: 25	n:120000
Cons ci ratio: 5.842471e-01	ci left: 2.664328e-04	ci right 4.922020e-04	k: 44	n:120000
KS ci ratio: 1.249643e-01	ci left: 7.624825e-03	ci right 8.649159e-03	k: 975	n:120000
YBX1   120000 perm   30 sec   (4013 perm/sec)   p_kst 8.125000e-03   p_cons 3.666667e-04   p_joint 2.083333e-04

Joint ci ratio: 7.407277e-01	ci left: 1.368749e-04	ci right 3.021671e-04	k: 27	n:130000
Cons ci ratio: 5.656966e-01	ci left: 2.656566e-04	ci right 4.807408e-04	k: 47	n:130000
KS ci ratio: 1.197388e-01	ci left: 7.687068e-03	ci right 8.673521e-03	k: 1062	n:130000
YBX1   130000 perm   33 sec   (3977 perm/sec)   p_kst 8.169231e-03   p_cons 3.615385e-04   p_joint 2.076923e-04

Joint ci ratio: 7.278477e-01	ci left: 1.329025e-04	ci right 2.890428e-04	k: 28	n:140000
Cons ci ratio: 5.435033e-01	ci left: 2.712463e-04	ci right 4.789410e-04	k: 51	n:140000
KS ci ratio: 1.161410e-01	ci left: 7.602426e-03	ci right 8.546690e-03	k: 1129	n:140000
YBX1   140000 perm   36 sec   (3937 perm/sec)   p_kst 8.064286e-03   p_cons 3.642857e-04   p_joint 2.000000e-04

Joint ci ratio: 7.039777e-01	ci left: 1.349431e-04	ci right 2.855002e-04	k: 30	n:150000
Cons ci ratio: 5.237325e-01	ci left: 2.762351e-04	ci right 4.772407e-04	k: 55	n:150000
KS ci ratio: 1.120497e-01	ci left: 7.639626e-03	ci right 8.552875e-03	k: 1213	n:150000
YBX1   150000 perm   39 sec   (3896 perm/sec)   p_kst 8.086667e-03   p_cons 3.666667e-04   p_joint 2.000000e-04

Joint ci ratio: 6.823119e-01	ci left: 1.368037e-04	ci right 2.823287e-04	k: 32	n:160000
Cons ci ratio: 5.146263e-01	ci left: 2.698311e-04	ci right 4.615389e-04	k: 57	n:160000
KS ci ratio: 1.076539e-01	ci left: 7.776088e-03	ci right 8.666871e-03	k: 1314	n:160000
YBX1   160000 perm   42 sec   (3853 perm/sec)   p_kst 8.212500e-03   p_cons 3.562500e-04   p_joint 2.000000e-04

Joint ci ratio: 7.039865e-01	ci left: 1.190670e-04	ci right 2.519132e-04	k: 30	n:170000
Cons ci ratio: 4.861218e-01	ci left: 2.899399e-04	ci right 4.807195e-04	k: 64	n:170000
KS ci ratio: 1.021140e-01	ci left: 8.155056e-03	ci right 9.038296e-03	k: 1460	n:170000
YBX1   170000 perm   45 sec   (3808 perm/sec)   p_kst 8.588235e-03   p_cons 3.764706e-04   p_joint 1.764706e-04

Joint ci ratio: 6.823200e-01	ci left: 1.216029e-04	ci right 2.509600e-04	k: 32	n:180000
Cons ci ratio: 4.618827e-01	ci left: 3.080768e-04	ci right 4.975123e-04	k: 71	n:180000
KS ci ratio: 9.959289e-02	ci left: 8.108144e-03	ci right 8.963353e-03	k: 1535	n:180000
YBX1   180000 perm   48 sec   (3767 perm/sec)   p_kst 8.527778e-03   p_cons 3.944444e-04   p_joint 1.777778e-04

Joint ci ratio: 6.823234e-01	ci left: 1.152026e-04	ci right 2.377520e-04	k: 32	n:190000
Cons ci ratio: 4.381759e-01	ci left: 3.291978e-04	ci right 5.181712e-04	k: 79	n:190000
KS ci ratio: 9.667634e-02	ci left: 8.164006e-03	ci right 8.998460e-03	k: 1629	n:190000
YBX1   190000 perm   51 sec   (3726 perm/sec)   p_kst 8.573684e-03   p_cons 4.157895e-04   p_joint 1.684211e-04

Joint ci ratio: 6.823264e-01	ci left: 1.094424e-04	ci right 2.258648e-04	k: 32	n:200000
Cons ci ratio: 4.328017e-01	ci left: 3.216411e-04	ci right 5.033533e-04	k: 81	n:200000
KS ci ratio: 9.433358e-02	ci left: 8.156011e-03	ci right 8.968329e-03	k: 1711	n:200000
YBX1   200000 perm   54 sec   (3684 perm/sec)   p_kst 8.555000e-03   p_cons 4.050000e-04   p_joint 1.600000e-04

Joint ci ratio: 7.407592e-01	ci left: 8.473104e-05	ci right 1.870592e-04	k: 27	n:210000
Cons ci ratio: 4.131147e-01	ci left: 3.403672e-04	ci right 5.215086e-04	k: 89	n:210000
KS ci ratio: 9.210151e-02	ci left: 8.158305e-03	ci right 8.950588e-03	k: 1795	n:210000
YBX1   210000 perm   58 sec   (3641 perm/sec)   p_kst 8.547619e-03   p_cons 4.238095e-04   p_joint 1.285714e-04

Joint ci ratio: 7.543563e-01	ci left: 7.720169e-05	ci right 1.731590e-04	k: 26	n:220000
Cons ci ratio: 4.042298e-01	ci left: 3.412086e-04	ci right 5.178448e-04	k: 93	n:220000
KS ci ratio: 9.002074e-02	ci left: 8.160596e-03	ci right 8.934255e-03	k: 1879	n:220000
YBX1   220000 perm   61 sec   (3590 perm/sec)   p_kst 8.540909e-03   p_cons 4.227273e-04   p_joint 1.181818e-04

Joint ci ratio: 7.543584e-01	ci left: 7.384504e-05	ci right 1.656305e-04	k: 26	n:230000
Cons ci ratio: 3.861617e-01	ci left: 3.616175e-04	ci right 5.383268e-04	k: 102	n:230000
KS ci ratio: 8.827914e-02	ci left: 8.124597e-03	ci right 8.879172e-03	k: 1954	n:230000
YBX1   230000 perm   65 sec   (3549 perm/sec)   p_kst 8.495652e-03   p_cons 4.434783e-04   p_joint 1.130435e-04

Joint ci ratio: 7.543603e-01	ci left: 7.076811e-05	ci right 1.587294e-04	k: 26	n:240000
Cons ci ratio: 3.806592e-01	ci left: 3.578452e-04	ci right 5.295960e-04	k: 105	n:240000
KS ci ratio: 8.650601e-02	ci left: 8.116194e-03	ci right 8.854083e-03	k: 2035	n:240000
YBX1   240000 perm   69 sec   (3503 perm/sec)   p_kst 8.479167e-03   p_cons 4.375000e-04   p_joint 1.083333e-04

Joint ci ratio: 7.407674e-01	ci left: 7.117385e-05	ci right 1.571305e-04	k: 27	n:250000
Cons ci ratio: 3.753853e-01	ci left: 3.543910e-04	ci right 5.215475e-04	k: 108	n:250000
KS ci ratio: 8.461418e-02	ci left: 8.151679e-03	ci right 8.875785e-03	k: 2127	n:250000
YBX1   250000 perm   72 sec   (3458 perm/sec)   p_kst 8.508000e-03   p_cons 4.320000e-04   p_joint 1.080000e-04

Joint ci ratio: 7.040095e-01	ci left: 7.785083e-05	ci right 1.647146e-04	k: 30	n:260000
Cons ci ratio: 3.670604e-01	ci left: 3.581976e-04	ci right 5.225046e-04	k: 113	n:260000
KS ci ratio: 8.267240e-02	ci left: 8.218500e-03	ci right 8.930981e-03	k: 2228	n:260000
YBX1   260000 perm   76 sec   (3416 perm/sec)   p_kst 8.569231e-03   p_cons 4.346154e-04   p_joint 1.153846e-04

Joint ci ratio: 7.407706e-01	ci left: 6.590163e-05	ci right 1.454914e-04	k: 27	n:270000
Cons ci ratio: 3.638840e-01	ci left: 3.516579e-04	ci right 5.112378e-04	k: 115	n:270000
KS ci ratio: 8.117531e-02	ci left: 8.215220e-03	ci right 8.913909e-03	k: 2311	n:270000
YBX1   270000 perm   80 sec   (3371 perm/sec)   p_kst 8.559259e-03   p_cons 4.259259e-04   p_joint 1.000000e-04

Joint ci ratio: 7.407720e-01	ci left: 6.354797e-05	ci right 1.402954e-04	k: 27	n:280000
Cons ci ratio: 3.592688e-01	ci left: 3.488396e-04	ci right 5.046630e-04	k: 118	n:280000
KS ci ratio: 7.965612e-02	ci left: 8.233287e-03	ci right 8.919800e-03	k: 2400	n:280000
YBX1   280000 perm   84 sec   (3320 perm/sec)   p_kst 8.571429e-03   p_cons 4.214286e-04   p_joint 9.642857e-05

Joint ci ratio: 6.929252e-01	ci left: 7.263214e-05	ci right 1.517277e-04	k: 31	n:290000
Cons ci ratio: 3.491449e-01	ci left: 3.588017e-04	ci right 5.135369e-04	k: 125	n:290000
KS ci ratio: 7.848987e-02	ci left: 8.192740e-03	ci right 8.865412e-03	k: 2472	n:290000
YBX1   290000 perm   88 sec   (3284 perm/sec)   p_kst 8.524138e-03   p_cons 4.310345e-04   p_joint 1.068966e-04

Joint ci ratio: 6.823457e-01	ci left: 7.296103e-05	ci right 1.505782e-04	k: 32	n:300000
Cons ci ratio: 3.437317e-01	ci left: 3.590149e-04	ci right 5.109080e-04	k: 129	n:300000
KS ci ratio: 7.705338e-02	ci left: 8.223625e-03	ci right 8.885921e-03	k: 2565	n:300000
YBX1   300000 perm   92 sec   (3247 perm/sec)   p_kst 8.550000e-03   p_cons 4.300000e-04   p_joint 1.066667e-04

Joint ci ratio: 6.823470e-01	ci left: 7.060741e-05	ci right 1.457209e-04	k: 32	n:310000
Cons ci ratio: 3.373059e-01	ci left: 3.621839e-04	ci right 5.119299e-04	k: 134	n:310000
KS ci ratio: 7.588030e-02	ci left: 8.211474e-03	ci right 8.862279e-03	k: 2645	n:310000
YBX1   310000 perm   97 sec   (3210 perm/sec)   p_kst 8.532258e-03   p_cons 4.322581e-04   p_joint 1.032258e-04

Joint ci ratio: 6.722377e-01	ci left: 7.098753e-05	ci right 1.448228e-04	k: 33	n:320000
Cons ci ratio: 3.336201e-01	ci left: 3.594510e-04	ci right 5.060940e-04	k: 137	n:320000
KS ci ratio: 7.470395e-02	ci left: 8.212423e-03	ci right 8.852775e-03	k: 2729	n:320000
YBX1   320000 perm   101 sec   (3176 perm/sec)   p_kst 8.528125e-03   p_cons 4.281250e-04   p_joint 1.031250e-04

Joint ci ratio: 6.625648e-01	ci left: 7.135250e-05	ci right 1.439716e-04	k: 34	n:330000
Cons ci ratio: 3.265949e-01	ci left: 3.652339e-04	ci right 5.104407e-04	k: 143	n:330000
KS ci ratio: 7.369964e-02	ci left: 8.186614e-03	ci right 8.816003e-03	k: 2804	n:330000
YBX1   330000 perm   105 sec   (3142 perm/sec)   p_kst 8.496970e-03   p_cons 4.333333e-04   p_joint 1.030303e-04

Joint ci ratio: 6.532978e-01	ci left: 7.170332e-05	ci right 1.431634e-04	k: 35	n:340000
Cons ci ratio: 3.199956e-01	ci left: 3.707071e-04	ci right 5.145017e-04	k: 149	n:340000
KS ci ratio: 7.268387e-02	ci left: 8.173929e-03	ci right 8.793316e-03	k: 2883	n:340000
YBX1   340000 perm   109 sec   (3109 perm/sec)   p_kst 8.479412e-03   p_cons 4.382353e-04   p_joint 1.029412e-04

Joint ci ratio: 6.444090e-01	ci left: 7.204089e-05	ci right 1.423948e-04	k: 36	n:350000
Cons ci ratio: 3.189358e-01	ci left: 3.627433e-04	ci right 5.028875e-04	k: 150	n:350000
KS ci ratio: 7.153872e-02	ci left: 8.201315e-03	ci right 8.812579e-03	k: 2976	n:350000
YBX1   350000 perm   114 sec   (3076 perm/sec)   p_kst 8.502857e-03   p_cons 4.285714e-04   p_joint 1.028571e-04

Joint ci ratio: 6.358735e-01	ci left: 7.236604e-05	ci right 1.416629e-04	k: 37	n:360000
Cons ci ratio: 3.127814e-01	ci left: 3.680130e-04	ci right 5.069016e-04	k: 156	n:360000
KS ci ratio: 7.053879e-02	ci left: 8.205418e-03	ci right 8.808089e-03	k: 3061	n:360000
YBX1   360000 perm   118 sec   (3039 perm/sec)   p_kst 8.502778e-03   p_cons 4.333333e-04   p_joint 1.027778e-04

Joint ci ratio: 6.358745e-01	ci left: 7.041018e-05	ci right 1.378342e-04	k: 37	n:370000
Cons ci ratio: 3.088716e-01	ci left: 3.680343e-04	ci right 5.048529e-04	k: 160	n:370000
KS ci ratio: 6.964665e-02	ci left: 8.193419e-03	ci right 8.787290e-03	k: 3140	n:370000
YBX1   370000 perm   123 sec   (3002 perm/sec)   p_kst 8.486486e-03   p_cons 4.324324e-04   p_joint 1.000000e-04

Joint ci ratio: 6.533015e-01	ci left: 6.415550e-05	ci right 1.280938e-04	k: 35	n:380000
Cons ci ratio: 3.023673e-01	ci left: 3.753582e-04	ci right 5.113962e-04	k: 167	n:380000
KS ci ratio: 6.865861e-02	ci left: 8.213138e-03	ci right 8.799657e-03	k: 3231	n:380000
YBX1   380000 perm   128 sec   (2961 perm/sec)   p_kst 8.502632e-03   p_cons 4.394737e-04   p_joint 9.210526e-05

Joint ci ratio: 6.358762e-01	ci left: 6.679935e-05	ci right 1.307659e-04	k: 37	n:390000
Cons ci ratio: 2.962573e-01	ci left: 3.823350e-04	ci right 5.175755e-04	k: 174	n:390000
KS ci ratio: 6.788683e-02	ci left: 8.189046e-03	ci right 8.767011e-03	k: 3305	n:390000
YBX1   390000 perm   134 sec   (2916 perm/sec)   p_kst 8.474359e-03   p_cons 4.461538e-04   p_joint 9.487179e-05

Joint ci ratio: 6.358770e-01	ci left: 6.512935e-05	ci right 1.274968e-04	k: 37	n:400000
Cons ci ratio: 2.921134e-01	ci left: 3.843544e-04	ci right 5.180558e-04	k: 179	n:400000
KS ci ratio: 6.706050e-02	ci left: 8.185860e-03	ci right 8.756294e-03	k: 3387	n:400000
YBX1   400000 perm   139 sec   (2884 perm/sec)   p_kst 8.467500e-03   p_cons 4.475000e-04   p_joint 9.250000e-05

Joint ci ratio: 6.276717e-01	ci left: 6.558876e-05	ci right 1.272124e-04	k: 38	n:410000
Cons ci ratio: 2.897097e-01	ci left: 3.817630e-04	ci right 5.132700e-04	k: 182	n:410000
KS ci ratio: 6.630218e-02	ci left: 8.173275e-03	ci right 8.736144e-03	k: 3465	n:410000
YBX1   410000 perm   144 sec   (2849 perm/sec)   p_kst 8.451220e-03   p_cons 4.439024e-04   p_joint 9.268293e-05

Joint ci ratio: 6.197762e-01	ci left: 6.603131e-05	ci right 1.269366e-04	k: 39	n:420000
Cons ci ratio: 2.873644e-01	ci left: 3.792993e-04	ci right 5.087077e-04	k: 185	n:420000
KS ci ratio: 6.555036e-02	ci left: 8.166008e-03	ci right 8.721758e-03	k: 3545	n:420000
YBX1   420000 perm   149 sec   (2822 perm/sec)   p_kst 8.440476e-03   p_cons 4.404762e-04   p_joint 9.285714e-05

Joint ci ratio: 4.355140e-01	ci left: 1.475260e-04	ci right 2.315457e-04	k: 80	n:430000
Cons ci ratio: 2.828381e-01	ci left: 3.834344e-04	ci right 5.118256e-04	k: 191	n:430000
KS ci ratio: 6.475155e-02	ci left: 8.177420e-03	ci right 8.726909e-03	k: 3633	n:430000
YBX1   430000 perm   154 sec   (2786 perm/sec)   p_kst 8.448837e-03   p_cons 4.441860e-04   p_joint 1.860465e-04

Joint ci ratio: 4.276658e-01	ci left: 1.502505e-04	ci right 2.338379e-04	k: 83	n:440000
Cons ci ratio: 2.785193e-01	ci left: 3.873968e-04	ci right 5.147867e-04	k: 197	n:440000
KS ci ratio: 6.393795e-02	ci left: 8.199535e-03	ci right 8.743331e-03	k: 3726	n:440000
YBX1   440000 perm   160 sec   (2755 perm/sec)   p_kst 8.468182e-03   p_cons 4.477273e-04   p_joint 1.886364e-04

Joint ci ratio: 4.496164e-01	ci left: 1.310961e-04	ci right 2.089137e-04	k: 75	n:450000
Cons ci ratio: 2.730565e-01	ci left: 3.953368e-04	ci right 5.223506e-04	k: 205	n:450000
KS ci ratio: 6.334689e-02	ci left: 8.170399e-03	ci right 8.707070e-03	k: 3796	n:450000
YBX1   450000 perm   165 sec   (2723 perm/sec)   p_kst 8.435556e-03   p_cons 4.555556e-04   p_joint 1.666667e-04

Joint ci ratio: 4.409961e-01	ci left: 1.340365e-04	ci right 2.116206e-04	k: 78	n:460000
Cons ci ratio: 2.698017e-01	ci left: 3.968725e-04	ci right 5.226026e-04	k: 210	n:460000
KS ci ratio: 6.262509e-02	ci left: 8.181074e-03	ci right 8.712102e-03	k: 3884	n:460000
YBX1   460000 perm   171 sec   (2697 perm/sec)   p_kst 8.443478e-03   p_cons 4.565217e-04   p_joint 1.695652e-04

Joint ci ratio: 4.355176e-01	ci left: 1.349704e-04	ci right 2.118401e-04	k: 80	n:470000
Cons ci ratio: 2.672803e-01	ci left: 3.963661e-04	ci right 5.205656e-04	k: 214	n:470000
KS ci ratio: 6.199827e-02	ci left: 8.172474e-03	ci right 8.697443e-03	k: 3963	n:470000
YBX1   470000 perm   176 sec   (2672 perm/sec)   p_kst 8.431915e-03   p_cons 4.553191e-04   p_joint 1.702128e-04

Joint ci ratio: 4.328542e-01	ci left: 1.340140e-04	ci right 2.097365e-04	k: 81	n:480000
Cons ci ratio: 2.630321e-01	ci left: 4.017227e-04	ci right 5.252707e-04	k: 221	n:480000
KS ci ratio: 6.138991e-02	ci left: 8.164257e-03	ci right 8.683369e-03	k: 4042	n:480000
YBX1   480000 perm   182 sec   (2642 perm/sec)   p_kst 8.420833e-03   p_cons 4.604167e-04   p_joint 1.687500e-04

Joint ci ratio: 4.202304e-01	ci left: 1.403878e-04	ci right 2.167492e-04	k: 86	n:490000
Cons ci ratio: 2.606941e-01	ci left: 4.011517e-04	ci right 5.232488e-04	k: 225	n:490000
KS ci ratio: 6.071746e-02	ci left: 8.178511e-03	ci right 8.692633e-03	k: 4132	n:490000
YBX1   490000 perm   187 sec   (2615 perm/sec)   p_kst 8.432653e-03   p_cons 4.591837e-04   p_joint 1.755102e-04

Joint ci ratio: 4.154818e-01	ci left: 1.411595e-04	ci right 2.168325e-04	k: 88	n:500000
Cons ci ratio: 2.578572e-01	ci left: 4.024789e-04	ci right 5.234322e-04	k: 230	n:500000
KS ci ratio: 6.015288e-02	ci left: 8.168582e-03	ci right 8.677139e-03	k: 4210	n:500000
YBX1   500000 perm   193 sec   (2587 perm/sec)   p_kst 8.420000e-03   p_cons 4.600000e-04   p_joint 1.760000e-04

Joint ci ratio: 4.131674e-01	ci left: 1.401480e-04	ci right 2.147450e-04	k: 89	n:510000
Cons ci ratio: 2.529751e-01	ci left: 4.111049e-04	ci right 5.319428e-04	k: 239	n:510000
KS ci ratio: 5.964586e-02	ci left: 8.147473e-03	ci right 8.650293e-03	k: 4282	n:510000
YBX1   510000 perm   200 sec   (2554 perm/sec)   p_kst 8.396078e-03   p_cons 4.686275e-04   p_joint 1.745098e-04

Joint ci ratio: 4.086517e-01	ci left: 1.409014e-04	ci right 2.148569e-04	k: 91	n:520000
Cons ci ratio: 2.519283e-01	ci left: 4.068017e-04	ci right 5.258023e-04	k: 241	n:520000
KS ci ratio: 5.901494e-02	ci left: 8.165091e-03	ci right 8.663486e-03	k: 4374	n:520000
YBX1   520000 perm   206 sec   (2521 perm/sec)   p_kst 8.411538e-03   p_cons 4.634615e-04   p_joint 1.750000e-04

Joint ci ratio: 4.021471e-01	ci left: 1.433260e-04	ci right 2.170376e-04	k: 94	n:530000
Cons ci ratio: 2.493653e-01	ci left: 4.079677e-04	ci right 5.259068e-04	k: 246	n:530000
KS ci ratio: 5.838385e-02	ci left: 8.187650e-03	ci right 8.681897e-03	k: 4469	n:530000
YBX1   530000 perm   213 sec   (2493 perm/sec)   p_kst 8.432075e-03   p_cons 4.641509e-04   p_joint 1.773585e-04

Joint ci ratio: 4.000474e-01	ci left: 1.423368e-04	ci right 2.150561e-04	k: 95	n:540000
Cons ci ratio: 2.439900e-01	ci left: 4.195244e-04	ci right 5.377942e-04	k: 257	n:540000
KS ci ratio: 5.781091e-02	ci left: 8.198449e-03	ci right 8.688329e-03	k: 4558	n:540000
YBX1   540000 perm   220 sec   (2460 perm/sec)   p_kst 8.440741e-03   p_cons 4.759259e-04   p_joint 1.759259e-04

Joint ci ratio: 3.979802e-01	ci left: 1.413846e-04	ci right 2.131458e-04	k: 96	n:550000
Cons ci ratio: 2.416595e-01	ci left: 4.204345e-04	ci right 5.376591e-04	k: 262	n:550000
KS ci ratio: 5.736665e-02	ci left: 8.176615e-03	ci right 8.661312e-03	k: 4629	n:550000
YBX1   550000 perm   226 sec   (2438 perm/sec)   p_kst 8.416364e-03   p_cons 4.763636e-04   p_joint 1.745455e-04

Joint ci ratio: 3.939396e-01	ci left: 1.420757e-04	ci right 2.132649e-04	k: 98	n:560000
Cons ci ratio: 2.389490e-01	ci left: 4.229960e-04	ci right 5.394161e-04	k: 268	n:560000
KS ci ratio: 5.690196e-02	ci left: 8.164378e-03	ci right 8.644300e-03	k: 4705	n:560000
YBX1   560000 perm   232 sec   (2417 perm/sec)   p_kst 8.401786e-03   p_cons 4.785714e-04   p_joint 1.750000e-04

Joint ci ratio: 3.900197e-01	ci left: 1.427461e-04	ci right 2.133763e-04	k: 100	n:570000
Cons ci ratio: 2.380662e-01	ci left: 4.188740e-04	ci right 5.336709e-04	k: 270	n:570000
KS ci ratio: 5.635338e-02	ci left: 8.180263e-03	ci right 8.656332e-03	k: 4797	n:570000
YBX1   570000 perm   238 sec   (2397 perm/sec)   p_kst 8.415789e-03   p_cons 4.736842e-04   p_joint 1.754386e-04

Joint ci ratio: 3.900203e-01	ci left: 1.402849e-04	ci right 2.096975e-04	k: 100	n:580000
Cons ci ratio: 2.376290e-01	ci left: 4.132733e-04	ci right 5.262966e-04	k: 271	n:580000
KS ci ratio: 5.586648e-02	ci left: 8.182020e-03	ci right 8.653944e-03	k: 4881	n:580000
YBX1   580000 perm   245 sec   (2370 perm/sec)   p_kst 8.415517e-03   p_cons 4.672414e-04   p_joint 1.724138e-04

Joint ci ratio: 2.730714e-01	ci left: 3.015260e-04	ci right 3.984062e-04	k: 205	n:590000
Cons ci ratio: 2.350504e-01	ci left: 4.158361e-04	ci right 5.281468e-04	k: 277	n:590000
KS ci ratio: 5.546524e-02	ci left: 8.162004e-03	ci right 8.629284e-03	k: 4952	n:590000
YBX1   590000 perm   252 sec   (2345 perm/sec)   p_kst 8.393220e-03   p_cons 4.694915e-04   p_joint 3.474576e-04

Joint ci ratio: 2.704581e-01	ci left: 3.027131e-04	ci right 3.988858e-04	k: 209	n:600000
Cons ci ratio: 2.333775e-01	ci left: 4.151810e-04	ci right 5.264015e-04	k: 281	n:600000
KS ci ratio: 5.500632e-02	ci left: 8.162393e-03	ci right 8.625706e-03	k: 5035	n:600000
YBX1   600000 perm   258 sec   (2326 perm/sec)   p_kst 8.391667e-03   p_cons 4.683333e-04   p_joint 3.483333e-04

Joint ci ratio: 2.672944e-01	ci left: 3.053948e-04	ci right 4.010946e-04	k: 214	n:610000
Cons ci ratio: 2.309335e-01	ci left: 4.176388e-04	ci right 5.281790e-04	k: 287	n:610000
KS ci ratio: 5.462860e-02	ci left: 8.141762e-03	ci right 8.600630e-03	k: 5105	n:610000
YBX1   610000 perm   264 sec   (2307 perm/sec)   p_kst 8.368852e-03   p_cons 4.704918e-04   p_joint 3.508197e-04

Joint ci ratio: 2.660602e-01	ci left: 3.034792e-04	ci right 3.980663e-04	k: 216	n:620000
Cons ci ratio: 2.297404e-01	ci left: 4.154622e-04	ci right 5.247775e-04	k: 290	n:620000
KS ci ratio: 5.421104e-02	ci left: 8.136128e-03	ci right 8.591064e-03	k: 5184	n:620000
YBX1   620000 perm   271 sec   (2289 perm/sec)   p_kst 8.361290e-03   p_cons 4.677419e-04   p_joint 3.483871e-04

Joint ci ratio: 2.679200e-01	ci left: 2.942187e-04	ci right 3.866682e-04	k: 213	n:630000
Cons ci ratio: 2.285655e-01	ci left: 4.133560e-04	ci right 5.214826e-04	k: 293	n:630000
KS ci ratio: 5.383386e-02	ci left: 8.121289e-03	ci right 8.572138e-03	k: 5257	n:630000
YBX1   630000 perm   277 sec   (2271 perm/sec)   p_kst 8.344444e-03   p_cons 4.650794e-04   p_joint 3.380952e-04

Joint ci ratio: 2.654505e-01	ci left: 2.954538e-04	ci right 3.872934e-04	k: 217	n:640000
Cons ci ratio: 2.266463e-01	ci left: 4.142645e-04	ci right 5.215915e-04	k: 298	n:640000
KS ci ratio: 5.333345e-02	ci left: 8.147012e-03	ci right 8.594955e-03	k: 5356	n:640000
YBX1   640000 perm   284 sec   (2251 perm/sec)   p_kst 8.368750e-03   p_cons 4.656250e-04   p_joint 3.390625e-04

Joint ci ratio: 2.642414e-01	ci left: 2.937809e-04	ci right 3.846158e-04	k: 219	n:650000
Cons ci ratio: 2.247747e-01	ci left: 4.151486e-04	ci right 5.216935e-04	k: 303	n:650000
KS ci ratio: 5.289564e-02	ci left: 8.156779e-03	ci right 8.601465e-03	k: 5445	n:650000
YBX1   650000 perm   291 sec   (2232 perm/sec)   p_kst 8.376923e-03   p_cons 4.661538e-04   p_joint 3.369231e-04

Joint ci ratio: 2.624581e-01	ci left: 2.935751e-04	ci right 3.836331e-04	k: 222	n:660000
Cons ci ratio: 2.225886e-01	ci left: 4.174401e-04	ci right 5.233884e-04	k: 309	n:660000
KS ci ratio: 5.245889e-02	ci left: 8.169255e-03	ci right 8.610833e-03	k: 5536	n:660000
YBX1   660000 perm   298 sec   (2216 perm/sec)   p_kst 8.387879e-03   p_cons 4.681818e-04   p_joint 3.363636e-04

Joint ci ratio: 2.612893e-01	ci left: 2.919825e-04	ci right 3.810879e-04	k: 224	n:670000
Cons ci ratio: 2.208149e-01	ci left: 4.182580e-04	ci right 5.234531e-04	k: 314	n:670000
KS ci ratio: 5.209816e-02	ci left: 8.160748e-03	ci right 8.598742e-03	k: 5613	n:670000
YBX1   670000 perm   305 sec   (2198 perm/sec)   p_kst 8.377612e-03   p_cons 4.686567e-04   p_joint 3.343284e-04

Joint ci ratio: 2.601359e-01	ci left: 2.904376e-04	ci right 3.786167e-04	k: 226	n:680000
Cons ci ratio: 2.194262e-01	ci left: 4.176652e-04	ci right 5.219614e-04	k: 318	n:680000
KS ci ratio: 5.174019e-02	ci left: 8.153953e-03	ci right 8.588486e-03	k: 5691	n:680000
YBX1   680000 perm   312 sec   (2176 perm/sec)   p_kst 8.369118e-03   p_cons 4.676471e-04   p_joint 3.323529e-04

Joint ci ratio: 2.573172e-01	ci left: 2.930049e-04	ci right 3.808446e-04	k: 231	n:690000
Cons ci ratio: 2.184019e-01	ci left: 4.157214e-04	ci right 5.189827e-04	k: 321	n:690000
KS ci ratio: 5.137603e-02	ci left: 8.151658e-03	ci right 8.582920e-03	k: 5772	n:690000
YBX1   690000 perm   319 sec   (2161 perm/sec)   p_kst 8.365217e-03   p_cons 4.652174e-04   p_joint 3.347826e-04

Joint ci ratio: 2.589983e-01	ci left: 2.848105e-04	ci right 3.708418e-04	k: 228	n:700000
Cons ci ratio: 2.177272e-01	ci left: 4.124836e-04	ci right 5.145817e-04	k: 323	n:700000
KS ci ratio: 5.098872e-02	ci left: 8.159312e-03	ci right 8.587629e-03	k: 5860	n:700000
YBX1   700000 perm   326 sec   (2145 perm/sec)   p_kst 8.371429e-03   p_cons 4.614286e-04   p_joint 3.257143e-04

Joint ci ratio: 2.573184e-01	ci left: 2.847511e-04	ci right 3.701169e-04	k: 231	n:710000
Cons ci ratio: 2.147641e-01	ci left: 4.186637e-04	ci right 5.206954e-04	k: 332	n:710000
KS ci ratio: 5.064439e-02	ci left: 8.155636e-03	ci right 8.580784e-03	k: 5940	n:710000
YBX1   710000 perm   334 sec   (2129 perm/sec)   p_kst 8.366197e-03   p_cons 4.676056e-04   p_joint 3.253521e-04

Joint ci ratio: 2.556707e-01	ci left: 2.846950e-04	ci right 3.694103e-04	k: 234	n:720000
Cons ci ratio: 2.138035e-01	ci left: 4.167919e-04	ci right 5.178535e-04	k: 335	n:720000
KS ci ratio: 5.029010e-02	ci left: 8.157558e-03	ci right 8.579745e-03	k: 6024	n:720000
YBX1   720000 perm   341 sec   (2112 perm/sec)   p_kst 8.366667e-03   p_cons 4.652778e-04   p_joint 3.250000e-04

Joint ci ratio: 2.535220e-01	ci left: 2.859249e-04	ci right 3.701782e-04	k: 238	n:730000
Cons ci ratio: 2.128556e-01	ci left: 4.149724e-04	ci right 5.150885e-04	k: 338	n:730000
KS ci ratio: 4.998442e-02	ci left: 8.145908e-03	ci right 8.564856e-03	k: 6098	n:730000
YBX1   730000 perm   348 sec   (2096 perm/sec)   p_kst 8.353425e-03   p_cons 4.630137e-04   p_joint 3.260274e-04

Joint ci ratio: 2.519458e-01	ci left: 2.858584e-04	ci right 3.694861e-04	k: 241	n:740000
Cons ci ratio: 2.122308e-01	ci left: 4.119235e-04	ci right 5.109743e-04	k: 340	n:740000
KS ci ratio: 4.959519e-02	ci left: 8.163945e-03	ci right 8.580458e-03	k: 6194	n:740000
YBX1   740000 perm   356 sec   (2080 perm/sec)   p_kst 8.370270e-03   p_cons 4.594595e-04   p_joint 3.256757e-04

Joint ci ratio: 2.498889e-01	ci left: 2.870449e-04	ci right 3.702276e-04	k: 245	n:750000
Cons ci ratio: 2.119208e-01	ci left: 4.076936e-04	ci right 5.055655e-04	k: 341	n:750000
KS ci ratio: 4.922676e-02	ci left: 8.177562e-03	ci right 8.591582e-03	k: 6287	n:750000
YBX1   750000 perm   363 sec   (2064 perm/sec)   p_kst 8.382667e-03   p_cons 4.546667e-04   p_joint 3.266667e-04

Joint ci ratio: 2.473872e-01	ci left: 2.894371e-04	ci right 3.723442e-04	k: 250	n:760000
Cons ci ratio: 2.103884e-01	ci left: 4.085603e-04	ci right 5.058396e-04	k: 346	n:760000
KS ci ratio: 4.888187e-02	ci left: 8.185632e-03	ci right 8.597076e-03	k: 6376	n:760000
YBX1   760000 perm   371 sec   (2047 perm/sec)   p_kst 8.389474e-03   p_cons 4.552632e-04   p_joint 3.289474e-04

Joint ci ratio: 2.459219e-01	ci left: 2.893335e-04	ci right 3.716450e-04	k: 253	n:770000
Cons ci ratio: 2.088888e-01	ci left: 4.094069e-04	ci right 5.061041e-04	k: 351	n:770000
KS ci ratio: 4.858583e-02	ci left: 8.179389e-03	ci right 8.587959e-03	k: 6454	n:770000
YBX1   770000 perm   379 sec   (2030 perm/sec)   p_kst 8.381818e-03   p_cons 4.558442e-04   p_joint 3.285714e-04

Joint ci ratio: 2.430674e-01	ci left: 2.928452e-04	ci right 3.750428e-04	k: 259	n:780000
Cons ci ratio: 2.080045e-01	ci left: 4.078035e-04	ci right 5.036623e-04	k: 354	n:780000
KS ci ratio: 4.826531e-02	ci left: 8.183447e-03	ci right 8.589448e-03	k: 6540	n:780000
YBX1   780000 perm   387 sec   (2016 perm/sec)   p_kst 8.384615e-03   p_cons 4.538462e-04   p_joint 3.320513e-04

Joint ci ratio: 2.421381e-01	ci left: 2.915160e-04	ci right 3.729807e-04	k: 261	n:790000
Cons ci ratio: 2.065549e-01	ci left: 4.086420e-04	ci right 5.039440e-04	k: 359	n:790000
KS ci ratio: 4.801319e-02	ci left: 8.166147e-03	ci right 8.569116e-03	k: 6609	n:790000
YBX1   790000 perm   397 sec   (1990 perm/sec)   p_kst 8.365823e-03   p_cons 4.544304e-04   p_joint 3.303797e-04

Joint ci ratio: 2.514298e-01	ci left: 2.655898e-04	ci right 3.431039e-04	k: 242	n:800000
Cons ci ratio: 2.059839e-01	ci left: 4.059048e-04	ci right 5.002737e-04	k: 361	n:800000
KS ci ratio: 4.768225e-02	ci left: 8.177696e-03	ci right 8.578376e-03	k: 6701	n:800000
YBX1   800000 perm   405 sec   (1974 perm/sec)   p_kst 8.376250e-03   p_cons 4.512500e-04   p_joint 3.025000e-04

Joint ci ratio: 2.524717e-01	ci left: 2.599976e-04	ci right 3.362434e-04	k: 240	n:810000
Cons ci ratio: 2.048553e-01	ci left: 4.055779e-04	ci right 4.992895e-04	k: 365	n:810000
KS ci ratio: 4.738621e-02	ci left: 8.179208e-03	ci right 8.577406e-03	k: 6785	n:810000
YBX1   810000 perm   413 sec   (1959 perm/sec)   p_kst 8.376543e-03   p_cons 4.506173e-04   p_joint 2.962963e-04

Joint ci ratio: 2.551334e-01	ci left: 2.511170e-04	ci right 3.256585e-04	k: 235	n:820000
Cons ci ratio: 2.040210e-01	ci left: 4.041031e-04	ci right 4.970462e-04	k: 368	n:820000
KS ci ratio: 4.708871e-02	ci left: 8.183101e-03	ci right 8.578920e-03	k: 6871	n:820000
YBX1   820000 perm   422 sec   (1944 perm/sec)   p_kst 8.379268e-03   p_cons 4.487805e-04   p_joint 2.865854e-04

Joint ci ratio: 2.535271e-01	ci left: 2.514756e-04	ci right 3.255793e-04	k: 238	n:830000
Cons ci ratio: 2.021126e-01	ci left: 4.072393e-04	ci right 4.999196e-04	k: 375	n:830000
KS ci ratio: 4.672230e-02	ci left: 8.213107e-03	ci right 8.607203e-03	k: 6979	n:830000
YBX1   830000 perm   430 sec   (1930 perm/sec)   p_kst 8.408434e-03   p_cons 4.518072e-04   p_joint 2.867470e-04

Joint ci ratio: 2.524730e-01	ci left: 2.507118e-04	ci right 3.242350e-04	k: 240	n:840000
Cons ci ratio: 2.010461e-01	ci left: 4.069128e-04	ci right 4.989701e-04	k: 379	n:840000
KS ci ratio: 4.646691e-02	ci left: 8.205930e-03	ci right 8.597472e-03	k: 7056	n:840000
YBX1   840000 perm   438 sec   (1916 perm/sec)   p_kst 8.400000e-03   p_cons 4.511905e-04   p_joint 2.857143e-04

Joint ci ratio: 2.493872e-01	ci left: 2.543772e-04	ci right 3.279222e-04	k: 246	n:850000
Cons ci ratio: 1.997363e-01	ci left: 4.077128e-04	ci right 4.992769e-04	k: 384	n:850000
KS ci ratio: 4.619606e-02	ci left: 8.205905e-03	ci right 8.595103e-03	k: 7139	n:850000
YBX1   850000 perm   447 sec   (1903 perm/sec)   p_kst 8.398824e-03   p_cons 4.517647e-04   p_joint 2.894118e-04

Joint ci ratio: 2.679322e-01	ci left: 2.155311e-04	ci right 2.832588e-04	k: 213	n:860000
Cons ci ratio: 1.987068e-01	ci left: 4.073911e-04	ci right 4.983543e-04	k: 388	n:860000
KS ci ratio: 4.589787e-02	ci left: 8.217383e-03	ci right 8.604543e-03	k: 7232	n:860000
YBX1   860000 perm   455 sec   (1889 perm/sec)   p_kst 8.409302e-03   p_cons 4.511628e-04   p_joint 2.476744e-04

Joint ci ratio: 2.679326e-01	ci left: 2.130537e-04	ci right 2.800030e-04	k: 213	n:870000
Cons ci ratio: 1.976931e-01	ci left: 4.070780e-04	ci right 4.974516e-04	k: 392	n:870000
KS ci ratio: 4.561480e-02	ci left: 8.225196e-03	ci right 8.610271e-03	k: 7322	n:870000
YBX1   870000 perm   464 sec   (1875 perm/sec)   p_kst 8.416092e-03   p_cons 4.505747e-04   p_joint 2.448276e-04

Joint ci ratio: 2.873978e-01	ci left: 1.810264e-04	ci right 2.427967e-04	k: 185	n:880000
Cons ci ratio: 1.962009e-01	ci left: 4.089341e-04	ci right 4.989527e-04	k: 398	n:880000
KS ci ratio: 4.532765e-02	ci left: 8.236209e-03	ci right 8.619310e-03	k: 7415	n:880000
YBX1   880000 perm   473 sec   (1862 perm/sec)   p_kst 8.426136e-03   p_cons 4.522727e-04   p_joint 2.102273e-04

Joint ci ratio: 2.843562e-01	ci left: 1.831646e-04	ci right 2.448843e-04	k: 189	n:890000
Cons ci ratio: 1.945018e-01	ci left: 4.118199e-04	ci right 5.015958e-04	k: 405	n:890000
KS ci ratio: 4.510041e-02	ci left: 8.226984e-03	ci right 8.607687e-03	k: 7490	n:890000
YBX1   890000 perm   481 sec   (1850 perm/sec)   p_kst 8.415730e-03   p_cons 4.550562e-04   p_joint 2.123596e-04

Joint ci ratio: 2.814091e-01	ci left: 1.852587e-04	ci right 2.469222e-04	k: 193	n:900000
Cons ci ratio: 1.937874e-01	ci left: 4.104154e-04	ci right 4.995177e-04	k: 408	n:900000
KS ci ratio: 4.485563e-02	ci left: 8.225659e-03	ci right 8.604182e-03	k: 7572	n:900000
YBX1   900000 perm   490 sec   (1837 perm/sec)   p_kst 8.413333e-03   p_cons 4.533333e-04   p_joint 2.144444e-04

Joint ci ratio: 2.164067e-01	ci left: 3.214500e-04	ci right 4.004686e-04	k: 327	n:910000
Cons ci ratio: 1.926136e-01	ci left: 4.111341e-04	ci right 4.997884e-04	k: 413	n:910000
KS ci ratio: 4.463243e-02	ci left: 8.217849e-03	ci right 8.594082e-03	k: 7648	n:910000
YBX1   910000 perm   499 sec   (1825 perm/sec)   p_kst 8.404396e-03   p_cons 4.538462e-04   p_joint 3.593407e-04

Joint ci ratio: 2.814098e-01	ci left: 1.812313e-04	ci right 2.415544e-04	k: 193	n:920000
Cons ci ratio: 1.916898e-01	ci left: 4.108039e-04	ci right 4.989127e-04	k: 417	n:920000
KS ci ratio: 4.442123e-02	ci left: 8.206988e-03	ci right 8.580900e-03	k: 7721	n:920000
YBX1   920000 perm   507 sec   (1813 perm/sec)   p_kst 8.392391e-03   p_cons 4.532609e-04   p_joint 2.097826e-04

Joint ci ratio: 2.881753e-01	ci left: 1.702960e-04	ci right 2.285906e-04	k: 184	n:930000
Cons ci ratio: 1.907792e-01	ci left: 4.104819e-04	ci right 4.980548e-04	k: 421	n:930000
KS ci ratio: 4.420729e-02	ci left: 8.198491e-03	ci right 8.570172e-03	k: 7796	n:930000
YBX1   930000 perm   516 sec   (1802 perm/sec)   p_kst 8.382796e-03   p_cons 4.526882e-04   p_joint 1.978495e-04

Joint ci ratio: 2.858666e-01	ci left: 1.714461e-04	ci right 2.295794e-04	k: 187	n:940000
Cons ci ratio: 1.903290e-01	ci left: 4.081411e-04	ci right 4.949854e-04	k: 423	n:940000
KS ci ratio: 4.395700e-02	ci left: 8.204911e-03	ci right 8.574723e-03	k: 7885	n:940000
YBX1   940000 perm   525 sec   (1790 perm/sec)   p_kst 8.388298e-03   p_cons 4.500000e-04   p_joint 1.989362e-04

Joint ci ratio: 2.836126e-01	ci left: 1.725739e-04	ci right 2.305455e-04	k: 190	n:950000
Cons ci ratio: 1.894376e-01	ci left: 4.078553e-04	ci right 4.941855e-04	k: 427	n:950000
KS ci ratio: 4.373858e-02	ci left: 8.200790e-03	ci right 8.568533e-03	k: 7964	n:950000
YBX1   950000 perm   534 sec   (1779 perm/sec)   p_kst 8.383158e-03   p_cons 4.494737e-04   p_joint 2.000000e-04

Joint ci ratio: 2.843584e-01	ci left: 1.698087e-04	ci right 2.270284e-04	k: 189	n:960000
Cons ci ratio: 1.874762e-01	ci left: 4.125396e-04	ci right 4.988544e-04	k: 436	n:960000
KS ci ratio: 4.352884e-02	ci left: 8.194697e-03	ci right 8.560362e-03	k: 8041	n:960000
YBX1   960000 perm   543 sec   (1768 perm/sec)   p_kst 8.376042e-03   p_cons 4.541667e-04   p_joint 1.968750e-04

Joint ci ratio: 2.836132e-01	ci left: 1.690156e-04	ci right 2.257921e-04	k: 190	n:970000
Cons ci ratio: 1.864128e-01	ci left: 4.132000e-04	ci right 4.991072e-04	k: 441	n:970000
KS ci ratio: 4.331940e-02	ci left: 8.189755e-03	ci right 8.553396e-03	k: 8119	n:970000
YBX1   970000 perm   553 sec   (1755 perm/sec)   p_kst 8.370103e-03   p_cons 4.546392e-04   p_joint 1.958763e-04

Joint ci ratio: 2.821398e-01	ci left: 1.691870e-04	ci right 2.256733e-04	k: 192	n:980000
Cons ci ratio: 1.855750e-01	ci left: 4.128753e-04	ci right 4.982857e-04	k: 445	n:980000
KS ci ratio: 4.311826e-02	ci left: 8.182898e-03	ci right 8.544506e-03	k: 8195	n:980000
YBX1   980000 perm   562 sec   (1743 perm/sec)   p_kst 8.362245e-03   p_cons 4.540816e-04   p_joint 1.959184e-04

Joint ci ratio: 2.814119e-01	ci left: 1.684168e-04	ci right 2.244751e-04	k: 193	n:990000
Cons ci ratio: 1.851606e-01	ci left: 4.106313e-04	ci right 4.953664e-04	k: 447	n:990000
KS ci ratio: 4.288853e-02	ci left: 8.188176e-03	ci right 8.548042e-03	k: 8283	n:990000
YBX1   990000 perm   572 sec   (1732 perm/sec)   p_kst 8.366667e-03   p_cons 4.515152e-04   p_joint 1.949495e-04

Joint ci ratio: 2.821404e-01	ci left: 1.658032e-04	ci right 2.211599e-04	k: 192	n:1000000
Cons ci ratio: 1.847489e-01	ci left: 4.084323e-04	ci right 4.925053e-04	k: 449	n:1000000
KS ci ratio: 4.269845e-02	ci left: 8.179502e-03	ci right 8.537354e-03	k: 8357	n:1000000
YBX1   1000000 perm   581 sec   (1722 perm/sec)   p_kst 8.357000e-03   p_cons 4.490000e-04   p_joint 1.920000e-04

Joint ci ratio: 2.828746e-01	ci left: 1.632416e-04	ci right 2.179102e-04	k: 191	n:1010000
Cons ci ratio: 1.845443e-01	ci left: 4.053327e-04	ci right 4.886649e-04	k: 450	n:1010000
KS ci ratio: 4.245760e-02	ci left: 8.191576e-03	ci right 8.547886e-03	k: 8452	n:1010000
YBX1   1010000 perm   590 sec   (1711 perm/sec)   p_kst 8.368317e-03   p_cons 4.455446e-04   p_joint 1.891089e-04

Joint ci ratio: 2.866324e-01	ci left: 1.570892e-04	ci right 2.105228e-04	k: 186	n:1020000
Cons ci ratio: 1.839337e-01	ci left: 4.041644e-04	ci right 4.869508e-04	k: 453	n:1020000
KS ci ratio: 4.224570e-02	ci left: 8.193717e-03	ci right 8.548298e-03	k: 8537	n:1020000
YBX1   1020000 perm   600 sec   (1701 perm/sec)   p_kst 8.369608e-03   p_cons 4.441176e-04   p_joint 1.823529e-04

Joint ci ratio: 2.843603e-01	ci left: 1.582682e-04	ci right 2.115995e-04	k: 189	n:1030000
Cons ci ratio: 1.833291e-01	ci left: 4.030191e-04	ci right 4.852695e-04	k: 456	n:1030000
KS ci ratio: 4.202220e-02	ci left: 8.201586e-03	ci right 8.554585e-03	k: 8628	n:1030000
YBX1   1030000 perm   609 sec   (1691 perm/sec)   p_kst 8.376699e-03   p_cons 4.427184e-04   p_joint 1.834951e-04

Joint ci ratio: 2.836151e-01	ci left: 1.576394e-04	ci right 2.105948e-04	k: 190	n:1040000
Cons ci ratio: 1.827304e-01	ci left: 4.018964e-04	ci right 4.836201e-04	k: 459	n:1040000
KS ci ratio: 4.182882e-02	ci left: 8.198841e-03	ci right 8.550059e-03	k: 8708	n:1040000
YBX1   1040000 perm   619 sec   (1681 perm/sec)   p_kst 8.373077e-03   p_cons 4.413462e-04   p_joint 1.826923e-04

Joint ci ratio: 2.874027e-01	ci left: 1.517170e-04	ci right 2.034873e-04	k: 185	n:1050000
Cons ci ratio: 1.821376e-01	ci left: 4.007955e-04	ci right 4.820017e-04	k: 462	n:1050000
KS ci ratio: 4.165961e-02	ci left: 8.187669e-03	ci right 8.536956e-03	k: 8779	n:1050000
YBX1   1050000 perm   629 sec   (1671 perm/sec)   p_kst 8.360952e-03   p_cons 4.400000e-04   p_joint 1.761905e-04

Joint ci ratio: 2.858699e-01	ci left: 1.520369e-04	ci right 2.035896e-04	k: 187	n:1060000
Cons ci ratio: 1.811620e-01	ci left: 4.015169e-04	ci right 4.823857e-04	k: 467	n:1060000
KS ci ratio: 4.144995e-02	ci left: 8.193518e-03	ci right 8.541252e-03	k: 8868	n:1060000
YBX1   1060000 perm   638 sec   (1660 perm/sec)   p_kst 8.366038e-03   p_cons 4.405660e-04   p_joint 1.764151e-04

Joint ci ratio: 2.962998e-01	ci left: 1.393530e-04	ci right 1.886533e-04	k: 174	n:1070000
Cons ci ratio: 1.805842e-01	ci left: 4.004412e-04	ci right 4.808080e-04	k: 470	n:1070000
KS ci ratio: 4.122023e-02	ci left: 8.208511e-03	ci right 8.554906e-03	k: 8967	n:1070000
YBX1   1070000 perm   649 sec   (1650 perm/sec)   p_kst 8.380374e-03   p_cons 4.392523e-04   p_joint 1.626168e-04

Joint ci ratio: 2.954569e-01	ci left: 1.389199e-04	ci right 1.879010e-04	k: 175	n:1080000
Cons ci ratio: 1.802022e-01	ci left: 3.985016e-04	ci right 4.782915e-04	k: 472	n:1080000
KS ci ratio: 4.100341e-02	ci left: 8.219566e-03	ci right 8.564560e-03	k: 9062	n:1080000
YBX1   1080000 perm   659 sec   (1640 perm/sec)   p_kst 8.390741e-03   p_cons 4.370370e-04   p_joint 1.620370e-04

Joint ci ratio: 2.946212e-01	ci left: 1.384950e-04	ci right 1.871623e-04	k: 176	n:1090000
Cons ci ratio: 1.792572e-01	ci left: 3.992264e-04	ci right 4.786968e-04	k: 477	n:1090000
KS ci ratio: 4.083046e-02	ci left: 8.214076e-03	ci right 8.557351e-03	k: 9139	n:1090000
YBX1   1090000 perm   669 sec   (1630 perm/sec)   p_kst 8.384404e-03   p_cons 4.376147e-04   p_joint 1.614679e-04

Joint ci ratio: 2.937925e-01	ci left: 1.380779e-04	ci right 1.864368e-04	k: 177	n:1100000
Cons ci ratio: 1.781425e-01	ci left: 4.008077e-04	ci right 4.800433e-04	k: 483	n:1100000
KS ci ratio: 4.064634e-02	ci left: 8.214089e-03	ci right 8.555780e-03	k: 9222	n:1100000
YBX1   1100000 perm   679 sec   (1619 perm/sec)   p_kst 8.383636e-03   p_cons 4.390909e-04   p_joint 1.609091e-04

Joint ci ratio: 2.937927e-01	ci left: 1.368340e-04	ci right 1.847572e-04	k: 177	n:1110000
Cons ci ratio: 1.774110e-01	ci left: 4.006400e-04	ci right 4.794823e-04	k: 487	n:1110000
KS ci ratio: 4.045373e-02	ci left: 8.218564e-03	ci right 8.558784e-03	k: 9310	n:1110000
YBX1   1110000 perm   689 sec   (1610 perm/sec)   p_kst 8.387387e-03   p_cons 4.387387e-04   p_joint 1.594595e-04

Joint ci ratio: 2.929710e-01	ci left: 1.364394e-04	ci right 1.840660e-04	k: 178	n:1120000
Cons ci ratio: 1.768683e-01	ci left: 3.996227e-04	ci right 4.779985e-04	k: 490	n:1120000
KS ci ratio: 4.028545e-02	ci left: 8.214123e-03	ci right 8.552712e-03	k: 9388	n:1120000
YBX1   1120000 perm   700 sec   (1601 perm/sec)   p_kst 8.382143e-03   p_cons 4.375000e-04   p_joint 1.589286e-04

Joint ci ratio: 2.116279e-01	ci left: 2.714290e-04	ci right 3.364870e-04	k: 342	n:1130000
Cons ci ratio: 1.754445e-01	ci left: 4.028538e-04	ci right 4.811598e-04	k: 498	n:1130000
KS ci ratio: 4.010643e-02	ci left: 8.215021e-03	ci right 8.552108e-03	k: 9472	n:1130000
YBX1   1130000 perm   710 sec   (1591 perm/sec)   p_kst 8.382301e-03   p_cons 4.407080e-04   p_joint 3.026549e-04

Joint ci ratio: 2.110137e-01	ci left: 2.707096e-04	ci right 3.353824e-04	k: 344	n:1140000
Cons ci ratio: 1.750941e-01	ci left: 4.009973e-04	ci right 4.787704e-04	k: 500	n:1140000
KS ci ratio: 3.993189e-02	ci left: 8.215038e-03	ci right 8.550625e-03	k: 9555	n:1140000
YBX1   1140000 perm   721 sec   (1582 perm/sec)   p_kst 8.381579e-03   p_cons 4.385965e-04   p_joint 3.017544e-04

Joint ci ratio: 2.104048e-01	ci left: 2.700030e-04	ci right 3.342969e-04	k: 346	n:1150000
Cons ci ratio: 1.740549e-01	ci left: 4.024999e-04	ci right 4.800523e-04	k: 506	n:1150000
KS ci ratio: 3.976169e-02	ci left: 8.214197e-03	ci right 8.548286e-03	k: 9637	n:1150000
YBX1   1150000 perm   731 sec   (1573 perm/sec)   p_kst 8.380000e-03   p_cons 4.400000e-04   p_joint 3.008696e-04

Joint ci ratio: 2.104051e-01	ci left: 2.676753e-04	ci right 3.314150e-04	k: 346	n:1160000
Cons ci ratio: 1.735423e-01	ci left: 4.015037e-04	ci right 4.786126e-04	k: 509	n:1160000
KS ci ratio: 3.961009e-02	ci left: 8.206544e-03	ci right 8.539021e-03	k: 9711	n:1160000
YBX1   1160000 perm   742 sec   (1564 perm/sec)   p_kst 8.371552e-03   p_cons 4.387931e-04   p_joint 2.982759e-04

Joint ci ratio: 2.170784e-01	ci left: 2.483990e-04	ci right 3.096750e-04	k: 325	n:1170000
Cons ci ratio: 1.728657e-01	ci left: 4.013427e-04	ci right 4.780887e-04	k: 513	n:1170000
KS ci ratio: 3.946021e-02	ci left: 8.199025e-03	ci right 8.529911e-03	k: 9785	n:1170000
YBX1   1170000 perm   752 sec   (1555 perm/sec)   p_kst 8.363248e-03   p_cons 4.384615e-04   p_joint 2.777778e-04

Joint ci ratio: 2.167464e-01	ci left: 2.470954e-04	ci right 3.079441e-04	k: 326	n:1180000
Cons ci ratio: 1.718654e-01	ci left: 4.028069e-04	ci right 4.793410e-04	k: 519	n:1180000
KS ci ratio: 3.929795e-02	ci left: 8.197510e-03	ci right 8.526944e-03	k: 9866	n:1180000
YBX1   1180000 perm   765 sec   (1543 perm/sec)   p_kst 8.361017e-03   p_cons 4.398305e-04   p_joint 2.762712e-04

Joint ci ratio: 2.154326e-01	ci left: 2.481984e-04	ci right 3.088993e-04	k: 330	n:1190000
Cons ci ratio: 1.715360e-01	ci left: 4.010304e-04	ci right 4.770658e-04	k: 521	n:1190000
KS ci ratio: 3.911588e-02	ci left: 8.205177e-03	ci right 8.533357e-03	k: 9958	n:1190000
YBX1   1190000 perm   777 sec   (1532 perm/sec)   p_kst 8.368067e-03   p_cons 4.378151e-04   p_joint 2.773109e-04

Joint ci ratio: 2.215425e-01	ci left: 2.319505e-04	ci right 2.905060e-04	k: 312	n:1200000
Cons ci ratio: 1.707203e-01	ci left: 4.016767e-04	ci right 4.774352e-04	k: 526	n:1200000
KS ci ratio: 3.895782e-02	ci left: 8.203642e-03	ci right 8.530405e-03	k: 10039	n:1200000
YBX1   1200000 perm   788 sec   (1523 perm/sec)   p_kst 8.365833e-03   p_cons 4.383333e-04   p_joint 2.600000e-04

Joint ci ratio: 2.187640e-01	ci left: 2.362806e-04	ci right 2.950806e-04	k: 320	n:1210000
Cons ci ratio: 1.695975e-01	ci left: 4.038958e-04	ci right 4.795206e-04	k: 533	n:1210000
KS ci ratio: 3.878427e-02	ci left: 8.209501e-03	ci right 8.535008e-03	k: 10129	n:1210000
YBX1   1210000 perm   800 sec   (1513 perm/sec)   p_kst 8.371074e-03   p_cons 4.404959e-04   p_joint 2.644628e-04

Joint ci ratio: 2.180857e-01	ci left: 2.358936e-04	ci right 2.943908e-04	k: 322	n:1220000
Cons ci ratio: 1.694391e-01	ci left: 4.013700e-04	ci right 4.764446e-04	k: 534	n:1220000
KS ci ratio: 3.863590e-02	ci left: 8.205525e-03	ci right 8.529603e-03	k: 10207	n:1220000
YBX1   1220000 perm   811 sec   (1504 perm/sec)   p_kst 8.366393e-03   p_cons 4.377049e-04   p_joint 2.639344e-04

Joint ci ratio: 2.174137e-01	ci left: 2.355131e-04	ci right 2.937119e-04	k: 324	n:1230000
Cons ci ratio: 1.686528e-01	ci left: 4.019999e-04	ci right 4.768079e-04	k: 539	n:1230000
KS ci ratio: 3.848544e-02	ci left: 8.203227e-03	ci right 8.525924e-03	k: 10287	n:1230000
YBX1   1230000 perm   825 sec   (1491 perm/sec)   p_kst 8.363415e-03   p_cons 4.382114e-04   p_joint 2.634146e-04

Joint ci ratio: 2.164171e-01	ci left: 2.359017e-04	ci right 2.938939e-04	k: 327	n:1240000
Cons ci ratio: 1.683415e-01	ci left: 4.003029e-04	ci right 4.746436e-04	k: 541	n:1240000
KS ci ratio: 3.831811e-02	ci left: 8.208956e-03	ci right 8.530444e-03	k: 10377	n:1240000
YBX1   1240000 perm   837 sec   (1482 perm/sec)   p_kst 8.368548e-03   p_cons 4.362903e-04   p_joint 2.637097e-04

Joint ci ratio: 2.160881e-01	ci left: 2.347711e-04	ci right 2.923860e-04	k: 328	n:1250000
Cons ci ratio: 1.677238e-01	ci left: 4.001659e-04	ci right 4.741809e-04	k: 545	n:1250000
KS ci ratio: 3.814007e-02	ci left: 8.220143e-03	ci right 8.540541e-03	k: 10474	n:1250000
YBX1   1250000 perm   848 sec   (1474 perm/sec)   p_kst 8.379200e-03   p_cons 4.360000e-04   p_joint 2.624000e-04

Joint ci ratio: 2.147862e-01	ci left: 2.359112e-04	ci right 2.934111e-04	k: 332	n:1260000
Cons ci ratio: 1.675706e-01	ci left: 3.977503e-04	ci right 4.712445e-04	k: 546	n:1260000
KS ci ratio: 3.797718e-02	ci left: 8.225653e-03	ci right 8.544867e-03	k: 10564	n:1260000
YBX1   1260000 perm   859 sec   (1466 perm/sec)   p_kst 8.384127e-03   p_cons 4.333333e-04   p_joint 2.634921e-04

Joint ci ratio: 2.218989e-01	ci left: 2.184220e-04	ci right 2.736630e-04	k: 311	n:1270000
Cons ci ratio: 1.671131e-01	ci left: 3.968816e-04	ci right 4.699950e-04	k: 549	n:1270000
KS ci ratio: 3.780562e-02	ci left: 8.235760e-03	ci right 8.553890e-03	k: 10660	n:1270000
YBX1   1270000 perm   871 sec   (1458 perm/sec)   p_kst 8.393701e-03   p_cons 4.322835e-04   p_joint 2.448819e-04

Joint ci ratio: 2.197953e-01	ci left: 2.211438e-04	ci right 2.764714e-04	k: 317	n:1280000
Cons ci ratio: 1.663586e-01	ci left: 3.975243e-04	ci right 4.703923e-04	k: 554	n:1280000
KS ci ratio: 3.761346e-02	ci left: 8.255773e-03	ci right 8.573020e-03	k: 10769	n:1280000
YBX1   1280000 perm   883 sec   (1450 perm/sec)   p_kst 8.413281e-03   p_cons 4.328125e-04   p_joint 2.476562e-04

Joint ci ratio: 2.187658e-01	ci left: 2.216274e-04	ci right 2.767813e-04	k: 320	n:1290000
Cons ci ratio: 1.659109e-01	ci left: 3.966715e-04	ci right 4.691680e-04	k: 557	n:1290000
KS ci ratio: 3.745197e-02	ci left: 8.263192e-03	ci right 8.579331e-03	k: 10862	n:1290000
YBX1   1290000 perm   895 sec   (1442 perm/sec)   p_kst 8.420155e-03   p_cons 4.317829e-04   p_joint 2.480620e-04

Joint ci ratio: 2.177506e-01	ci left: 2.221041e-04	ci right 2.770858e-04	k: 323	n:1300000
Cons ci ratio: 1.650259e-01	ci left: 3.980445e-04	ci right 4.703653e-04	k: 563	n:1300000
KS ci ratio: 3.731832e-02	ci left: 8.259067e-03	ci right 8.573898e-03	k: 10940	n:1300000
YBX1   1300000 perm   907 sec   (1433 perm/sec)   p_kst 8.415385e-03   p_cons 4.330769e-04   p_joint 2.484615e-04

Joint ci ratio: 2.167494e-01	ci left: 2.225741e-04	ci right 2.773852e-04	k: 326	n:1310000
Cons ci ratio: 1.638676e-01	ci left: 4.008616e-04	ci right 4.731327e-04	k: 571	n:1310000
KS ci ratio: 3.718099e-02	ci left: 8.257277e-03	ci right 8.570856e-03	k: 11021	n:1310000
YBX1   1310000 perm   920 sec   (1424 perm/sec)   p_kst 8.412977e-03   p_cons 4.358779e-04   p_joint 2.488550e-04

Joint ci ratio: 2.164188e-01	ci left: 2.216044e-04	ci right 2.760824e-04	k: 327	n:1320000
Cons ci ratio: 1.632976e-01	ci left: 4.007310e-04	ci right 4.727026e-04	k: 575	n:1320000
KS ci ratio: 3.708223e-02	ci left: 8.239003e-03	ci right 8.551039e-03	k: 11080	n:1320000
YBX1   1320000 perm   933 sec   (1415 perm/sec)   p_kst 8.393939e-03   p_cons 4.356061e-04   p_joint 2.477273e-04

Joint ci ratio: 2.157620e-01	ci left: 2.213606e-04	ci right 2.755916e-04	k: 329	n:1330000
Cons ci ratio: 1.627336e-01	ci left: 4.006028e-04	ci right 4.722786e-04	k: 579	n:1330000
KS ci ratio: 3.695249e-02	ci left: 8.235159e-03	ci right 8.545935e-03	k: 11158	n:1330000
YBX1   1330000 perm   945 sec   (1408 perm/sec)   p_kst 8.389474e-03   p_cons 4.353383e-04   p_joint 2.473684e-04

Joint ci ratio: 2.154360e-01	ci left: 2.204146e-04	ci right 2.743215e-04	k: 330	n:1340000
Cons ci ratio: 1.620366e-01	ci left: 4.011930e-04	ci right 4.726369e-04	k: 584	n:1340000
KS ci ratio: 3.684228e-02	ci left: 8.223240e-03	ci right 8.532622e-03	k: 11225	n:1340000
YBX1   1340000 perm   957 sec   (1401 perm/sec)   p_kst 8.376866e-03   p_cons 4.358209e-04   p_joint 2.462687e-04

Joint ci ratio: 2.289839e-01	ci left: 1.921986e-04	ci right 2.425791e-04	k: 292	n:1350000
Cons ci ratio: 1.610756e-01	ci left: 4.031968e-04	ci right 4.745305e-04	k: 591	n:1350000
KS ci ratio: 3.667906e-02	ci left: 8.235722e-03	ci right 8.544171e-03	k: 11325	n:1350000
YBX1   1350000 perm   969 sec   (1393 perm/sec)   p_kst 8.388889e-03   p_cons 4.377778e-04   p_joint 2.162963e-04

Joint ci ratio: 2.285942e-01	ci left: 1.914785e-04	ci right 2.415728e-04	k: 293	n:1360000
Cons ci ratio: 1.609399e-01	ci left: 4.009377e-04	ci right 4.718063e-04	k: 592	n:1360000
KS ci ratio: 3.654218e-02	ci left: 8.237093e-03	ci right 8.544418e-03	k: 11410	n:1360000
YBX1   1360000 perm   981 sec   (1386 perm/sec)   p_kst 8.389706e-03   p_cons 4.352941e-04   p_joint 2.154412e-04

Joint ci ratio: 2.274367e-01	ci left: 1.921456e-04	ci right 2.421241e-04	k: 296	n:1370000
Cons ci ratio: 1.601318e-01	ci left: 4.022148e-04	ci right 4.729177e-04	k: 598	n:1370000
KS ci ratio: 3.641161e-02	ci left: 8.236276e-03	ci right 8.542450e-03	k: 11492	n:1370000
YBX1   1370000 perm   995 sec   (1377 perm/sec)   p_kst 8.388321e-03   p_cons 4.364964e-04   p_joint 2.160584e-04

Joint ci ratio: 2.266748e-01	ci left: 1.921201e-04	ci right 2.419012e-04	k: 298	n:1380000
Cons ci ratio: 1.595998e-01	ci left: 4.020828e-04	ci right 4.725052e-04	k: 602	n:1380000
KS ci ratio: 3.627611e-02	ci left: 8.238346e-03	ci right 8.543433e-03	k: 11578	n:1380000
YBX1   1380000 perm   1008 sec   (1369 perm/sec)   p_kst 8.389855e-03   p_cons 4.362319e-04   p_joint 2.159420e-04

Joint ci ratio: 2.297703e-01	ci left: 1.853115e-04	ci right 2.340771e-04	k: 290	n:1390000
Cons ci ratio: 1.592043e-01	ci left: 4.012623e-04	ci right 4.713502e-04	k: 605	n:1390000
KS ci ratio: 3.611558e-02	ci left: 8.252508e-03	ci right 8.556740e-03	k: 11681	n:1390000
YBX1   1390000 perm   1023 sec   (1359 perm/sec)   p_kst 8.403597e-03   p_cons 4.352518e-04   p_joint 2.086331e-04

Joint ci ratio: 2.282071e-01	ci left: 1.866811e-04	ci right 2.354259e-04	k: 294	n:1400000
Cons ci ratio: 1.588118e-01	ci left: 4.004537e-04	ci right 4.702115e-04	k: 608	n:1400000
KS ci ratio: 3.597873e-02	ci left: 8.256560e-03	ci right 8.559764e-03	k: 11770	n:1400000
YBX1   1400000 perm   1035 sec   (1352 perm/sec)   p_kst 8.407143e-03   p_cons 4.342857e-04   p_joint 2.100000e-04

Joint ci ratio: 2.278214e-01	ci left: 1.860258e-04	ci right 2.345059e-04	k: 295	n:1410000
Cons ci ratio: 1.581638e-01	ci left: 4.010191e-04	ci right 4.705633e-04	k: 613	n:1410000
KS ci ratio: 3.584951e-02	ci left: 8.257746e-03	ci right 8.559882e-03	k: 11855	n:1410000
YBX1   1410000 perm   1050 sec   (1343 perm/sec)   p_kst 8.407801e-03   p_cons 4.347518e-04   p_joint 2.092199e-04

Joint ci ratio: 2.278215e-01	ci left: 1.847158e-04	ci right 2.328544e-04	k: 295	n:1420000
Cons ci ratio: 1.576512e-01	ci left: 4.009006e-04	ci right 4.701776e-04	k: 617	n:1420000
KS ci ratio: 3.572318e-02	ci left: 8.258218e-03	ci right 8.559285e-03	k: 11939	n:1420000
YBX1   1420000 perm   1063 sec   (1336 perm/sec)   p_kst 8.407746e-03   p_cons 4.345070e-04   p_joint 2.077465e-04

Joint ci ratio: 2.266757e-01	ci left: 1.854025e-04	ci right 2.334432e-04	k: 298	n:1430000
Cons ci ratio: 1.570172e-01	ci left: 4.014559e-04	ci right 4.705237e-04	k: 622	n:1430000
KS ci ratio: 3.558923e-02	ci left: 8.262845e-03	ci right 8.562928e-03	k: 12029	n:1430000
YBX1   1430000 perm   1075 sec   (1330 perm/sec)   p_kst 8.411888e-03   p_cons 4.349650e-04   p_joint 2.083916e-04

Joint ci ratio: 2.251743e-01	ci left: 1.867356e-04	ci right 2.347567e-04	k: 302	n:1440000
Cons ci ratio: 1.563909e-01	ci left: 4.020041e-04	ci right 4.708644e-04	k: 627	n:1440000
KS ci ratio: 3.546120e-02	ci left: 8.265344e-03	ci right 8.564416e-03	k: 12116	n:1440000
YBX1   1440000 perm   1088 sec   (1323 perm/sec)   p_kst 8.413889e-03   p_cons 4.354167e-04   p_joint 2.097222e-04

Joint ci ratio: 2.248038e-01	ci left: 1.860986e-04	ci right 2.338662e-04	k: 303	n:1450000
Cons ci ratio: 1.560187e-01	ci left: 4.012198e-04	ci right 4.697668e-04	k: 630	n:1450000
KS ci ratio: 3.531995e-02	ci left: 8.274647e-03	ci right 8.572839e-03	k: 12213	n:1450000
YBX1   1450000 perm   1107 sec   (1310 perm/sec)   p_kst 8.422759e-03   p_cons 4.344828e-04   p_joint 2.089655e-04

Joint ci ratio: 2.237026e-01	ci left: 1.867633e-04	ci right 2.344344e-04	k: 306	n:1460000
Cons ci ratio: 1.552821e-01	ci left: 4.024212e-04	ci right 4.708188e-04	k: 636	n:1460000
KS ci ratio: 3.519191e-02	ci left: 8.278393e-03	ci right 8.575617e-03	k: 12302	n:1460000
YBX1   1460000 perm   1122 sec   (1301 perm/sec)   p_kst 8.426027e-03   p_cons 4.356164e-04   p_joint 2.095890e-04

Joint ci ratio: 2.233393e-01	ci left: 1.861350e-04	ci right 2.335579e-04	k: 307	n:1470000
Cons ci ratio: 1.547969e-01	ci left: 4.022992e-04	ci right 4.704425e-04	k: 640	n:1470000
KS ci ratio: 3.507239e-02	ci left: 8.278719e-03	ci right 8.574924e-03	k: 12386	n:1470000
YBX1   1470000 perm   1137 sec   (1293 perm/sec)   p_kst 8.425850e-03   p_cons 4.353741e-04   p_joint 2.088435e-04

Joint ci ratio: 2.222594e-01	ci left: 1.867912e-04	ci right 2.341198e-04	k: 310	n:1480000
Cons ci ratio: 1.543162e-01	ci left: 4.021791e-04	ci right 4.700710e-04	k: 644	n:1480000
KS ci ratio: 3.495831e-02	ci left: 8.277032e-03	ci right 8.572194e-03	k: 12467	n:1480000
YBX1   1480000 perm   1152 sec   (1285 perm/sec)   p_kst 8.423649e-03   p_cons 4.351351e-04   p_joint 2.094595e-04

Joint ci ratio: 2.219030e-01	ci left: 1.861714e-04	ci right 2.332569e-04	k: 311	n:1490000
Cons ci ratio: 1.534854e-01	ci left: 4.039970e-04	ci right 4.717949e-04	k: 651	n:1490000
KS ci ratio: 3.484955e-02	ci left: 8.273373e-03	ci right 8.567469e-03	k: 12545	n:1490000
YBX1   1490000 perm   1167 sec   (1277 perm/sec)   p_kst 8.419463e-03   p_cons 4.369128e-04   p_joint 2.087248e-04

Joint ci ratio: 2.208437e-01	ci left: 1.868194e-04	ci right 2.338126e-04	k: 314	n:1500000
Cons ci ratio: 1.530168e-01	ci left: 4.038681e-04	ci right 4.714184e-04	k: 655	n:1500000
KS ci ratio: 3.474040e-02	ci left: 8.270426e-03	ci right 8.563477e-03	k: 12624	n:1500000
YBX1   1500000 perm   1181 sec   (1270 perm/sec)   p_kst 8.416000e-03   p_cons 4.366667e-04   p_joint 2.093333e-04

Joint ci ratio: 2.201460e-01	ci left: 1.868335e-04	ci right 2.336617e-04	k: 316	n:1510000
Cons ci ratio: 1.522067e-01	ci left: 4.056523e-04	ci right 4.731091e-04	k: 662	n:1510000
KS ci ratio: 3.462953e-02	ci left: 8.268832e-03	ci right 8.560873e-03	k: 12705	n:1510000
YBX1   1510000 perm   1194 sec   (1264 perm/sec)   p_kst 8.413907e-03   p_cons 4.384106e-04   p_joint 2.092715e-04

Joint ci ratio: 2.194548e-01	ci left: 1.868477e-04	ci right 2.335126e-04	k: 318	n:1520000
Cons ci ratio: 1.518636e-01	ci left: 4.048821e-04	ci right 4.720452e-04	k: 665	n:1520000
KS ci ratio: 3.450474e-02	ci left: 8.274435e-03	ci right 8.565601e-03	k: 12797	n:1520000
YBX1   1520000 perm   1209 sec   (1257 perm/sec)   p_kst 8.419079e-03   p_cons 4.375000e-04   p_joint 2.092105e-04

Joint ci ratio: 2.194549e-01	ci left: 1.856265e-04	ci right 2.319863e-04	k: 318	n:1530000
Cons ci ratio: 1.514096e-01	ci left: 4.047510e-04	ci right 4.716735e-04	k: 669	n:1530000
KS ci ratio: 3.439206e-02	ci left: 8.274783e-03	ci right 8.564991e-03	k: 12881	n:1530000
YBX1   1530000 perm   1224 sec   (1250 perm/sec)   p_kst 8.418954e-03   p_cons 4.372549e-04   p_joint 2.078431e-04

Joint ci ratio: 2.194551e-01	ci left: 1.844211e-04	ci right 2.304800e-04	k: 318	n:1540000
Cons ci ratio: 1.511842e-01	ci left: 4.033723e-04	ci right 4.699585e-04	k: 671	n:1540000
KS ci ratio: 3.427782e-02	ci left: 8.276415e-03	ci right 8.565698e-03	k: 12967	n:1540000
YBX1   1540000 perm   1239 sec   (1243 perm/sec)   p_kst 8.420130e-03   p_cons 4.357143e-04   p_joint 2.064935e-04

Joint ci ratio: 2.191120e-01	ci left: 1.838410e-04	ci right 2.296735e-04	k: 319	n:1550000
Cons ci ratio: 1.509599e-01	ci left: 4.020114e-04	ci right 4.682656e-04	k: 673	n:1550000
KS ci ratio: 3.415810e-02	ci left: 8.281227e-03	ci right 8.569647e-03	k: 13058	n:1550000
YBX1   1550000 perm   1254 sec   (1236 perm/sec)   p_kst 8.424516e-03   p_cons 4.341935e-04   p_joint 2.058065e-04

Joint ci ratio: 2.187705e-01	ci left: 1.832684e-04	ci right 2.288774e-04	k: 320	n:1560000
Cons ci ratio: 1.508482e-01	ci left: 4.000512e-04	ci right 4.659292e-04	k: 674	n:1560000
KS ci ratio: 3.404616e-02	ci left: 8.282800e-03	ci right 8.570311e-03	k: 13144	n:1560000
YBX1   1560000 perm   1270 sec   (1229 perm/sec)   p_kst 8.425641e-03   p_cons 4.320513e-04   p_joint 2.051282e-04

Joint ci ratio: 2.184306e-01	ci left: 1.827031e-04	ci right 2.280914e-04	k: 321	n:1570000
Cons ci ratio: 1.504032e-01	ci left: 3.999548e-04	ci right 4.656052e-04	k: 678	n:1570000
KS ci ratio: 3.394049e-02	ci left: 8.281829e-03	ci right 8.568396e-03	k: 13226	n:1570000
YBX1   1570000 perm   1285 sec   (1222 perm/sec)   p_kst 8.424204e-03   p_cons 4.318471e-04   p_joint 2.044586e-04

Joint ci ratio: 2.184307e-01	ci left: 1.815468e-04	ci right 2.266478e-04	k: 321	n:1580000
Cons ci ratio: 1.498525e-01	ci left: 4.004692e-04	ci right 4.659416e-04	k: 683	n:1580000
KS ci ratio: 3.383579e-02	ci left: 8.280871e-03	ci right 8.566505e-03	k: 13308	n:1580000
YBX1   1580000 perm   1299 sec   (1216 perm/sec)   p_kst 8.422785e-03   p_cons 4.322785e-04   p_joint 2.031646e-04

Joint ci ratio: 2.177555e-01	ci left: 1.815941e-04	ci right 2.265488e-04	k: 323	n:1590000
Cons ci ratio: 1.491994e-01	ci left: 4.015829e-04	ci right 4.669258e-04	k: 689	n:1590000
KS ci ratio: 3.372063e-02	ci left: 8.285540e-03	ci right 8.570343e-03	k: 13399	n:1590000
YBX1   1590000 perm   1317 sec   (1208 perm/sec)   p_kst 8.427044e-03   p_cons 4.333333e-04   p_joint 2.031447e-04

Joint ci ratio: 2.170865e-01	ci left: 1.816411e-04	ci right 2.264508e-04	k: 325	n:1600000
Cons ci ratio: 1.489838e-01	ci left: 4.002764e-04	ci right 4.653042e-04	k: 691	n:1600000
KS ci ratio: 3.363683e-02	ci left: 8.275277e-03	ci right 8.559007e-03	k: 13466	n:1600000
YBX1   1600000 perm   1332 sec   (1202 perm/sec)   p_kst 8.416250e-03   p_cons 4.318750e-04   p_joint 2.031250e-04

Joint ci ratio: 2.164237e-01	ci left: 1.816877e-04	ci right 2.263538e-04	k: 327	n:1610000
Cons ci ratio: 1.483420e-01	ci left: 4.013783e-04	ci right 4.662793e-04	k: 697	n:1610000
KS ci ratio: 3.352369e-02	ci left: 8.279925e-03	ci right 8.562841e-03	k: 13557	n:1610000
YBX1   1610000 perm   1347 sec   (1195 perm/sec)   p_kst 8.420497e-03   p_cons 4.329193e-04   p_joint 2.031056e-04

Joint ci ratio: 2.151158e-01	ci left: 1.829019e-04	ci right 2.275589e-04	k: 331	n:1620000
Cons ci ratio: 1.473946e-01	ci left: 4.042507e-04	ci right 4.691619e-04	k: 706	n:1620000
KS ci ratio: 3.342155e-02	ci left: 8.279620e-03	ci right 8.561647e-03	k: 13640	n:1620000
YBX1   1620000 perm   1362 sec   (1189 perm/sec)   p_kst 8.419753e-03   p_cons 4.358025e-04   p_joint 2.043210e-04

Joint ci ratio: 2.144708e-01	ci left: 1.829408e-04	ci right 2.274558e-04	k: 333	n:1630000
Cons ci ratio: 1.468761e-01	ci left: 4.047252e-04	ci right 4.694640e-04	k: 711	n:1630000
KS ci ratio: 3.331545e-02	ci left: 8.281754e-03	ci right 8.562941e-03	k: 13727	n:1630000
YBX1   1630000 perm   1378 sec   (1183 perm/sec)   p_kst 8.421472e-03   p_cons 4.361963e-04   p_joint 2.042945e-04

Joint ci ratio: 2.194565e-01	ci left: 1.731758e-04	ci right 2.164265e-04	k: 318	n:1640000
Cons ci ratio: 1.463630e-01	ci left: 4.051943e-04	ci right 4.697619e-04	k: 716	n:1640000
KS ci ratio: 3.320187e-02	ci left: 8.288097e-03	ci right 8.568521e-03	k: 13821	n:1640000
YBX1   1640000 perm   1395 sec   (1175 perm/sec)   p_kst 8.427439e-03   p_cons 4.365854e-04   p_joint 1.939024e-04

Joint ci ratio: 2.191133e-01	ci left: 1.726990e-04	ci right 2.157541e-04	k: 319	n:1650000
Cons ci ratio: 1.460579e-01	ci left: 4.044902e-04	ci right 4.687995e-04	k: 719	n:1650000
KS ci ratio: 3.310025e-02	ci left: 8.288954e-03	ci right 8.568533e-03	k: 13906	n:1650000
YBX1   1650000 perm   1412 sec   (1169 perm/sec)   p_kst 8.427879e-03   p_cons 4.357576e-04   p_joint 1.933333e-04

Joint ci ratio: 2.184318e-01	ci left: 1.727974e-04	ci right 2.157251e-04	k: 321	n:1660000
Cons ci ratio: 1.455533e-01	ci left: 4.049557e-04	ci right 4.690973e-04	k: 724	n:1660000
KS ci ratio: 3.297935e-02	ci left: 8.299960e-03	ci right 8.578868e-03	k: 14008	n:1660000
YBX1   1660000 perm   1427 sec   (1163 perm/sec)   p_kst 8.438554e-03   p_cons 4.361446e-04   p_joint 1.933735e-04

Joint ci ratio: 2.194568e-01	ci left: 1.700648e-04	ci right 2.125386e-04	k: 318	n:1670000
Cons ci ratio: 1.451534e-01	ci left: 4.048389e-04	ci right 4.687706e-04	k: 728	n:1670000
KS ci ratio: 3.290447e-02	ci left: 8.288266e-03	ci right 8.566137e-03	k: 14072	n:1670000
YBX1   1670000 perm   1442 sec   (1158 perm/sec)   p_kst 8.426347e-03   p_cons 4.359281e-04   p_joint 1.904192e-04

Joint ci ratio: 2.191137e-01	ci left: 1.696151e-04	ci right 2.119014e-04	k: 319	n:1680000
Cons ci ratio: 1.448558e-01	ci left: 4.041501e-04	ci right 4.678307e-04	k: 731	n:1680000
KS ci ratio: 3.277288e-02	ci left: 8.305642e-03	ci right 8.582961e-03	k: 14185	n:1680000
YBX1   1680000 perm   1458 sec   (1152 perm/sec)   p_kst 8.443452e-03   p_cons 4.351190e-04   p_joint 1.898810e-04

Joint ci ratio: 2.187722e-01	ci left: 1.691707e-04	ci right 2.112716e-04	k: 320	n:1690000
Cons ci ratio: 1.441680e-01	ci left: 4.057510e-04	ci right 4.693542e-04	k: 738	n:1690000
KS ci ratio: 3.268552e-02	ci left: 8.301098e-03	ci right 8.577513e-03	k: 14261	n:1690000
YBX1   1690000 perm   1475 sec   (1146 perm/sec)   p_kst 8.438462e-03   p_cons 4.366864e-04   p_joint 1.893491e-04

Joint ci ratio: 2.177570e-01	ci left: 1.698438e-04	ci right 2.118899e-04	k: 323	n:1700000
Cons ci ratio: 1.438763e-01	ci left: 4.050653e-04	ci right 4.684215e-04	k: 741	n:1700000
KS ci ratio: 3.256795e-02	ci left: 8.312363e-03	ci right 8.588139e-03	k: 14364	n:1700000
YBX1   1700000 perm   1492 sec   (1140 perm/sec)   p_kst 8.449412e-03   p_cons 4.358824e-04   p_joint 1.900000e-04

Joint ci ratio: 2.177571e-01	ci left: 1.688506e-04	ci right 2.106508e-04	k: 323	n:1710000
Cons ci ratio: 1.433939e-01	ci left: 4.055154e-04	ci right 4.687112e-04	k: 746	n:1710000
KS ci ratio: 3.246635e-02	ci left: 8.315957e-03	ci right 8.590975e-03	k: 14454	n:1710000
YBX1   1710000 perm   1507 sec   (1134 perm/sec)   p_kst 8.452632e-03   p_cons 4.362573e-04   p_joint 1.888889e-04

Joint ci ratio: 2.160959e-01	ci left: 1.706179e-04	ci right 2.124907e-04	k: 328	n:1720000
Cons ci ratio: 1.430116e-01	ci left: 4.054000e-04	ci right 4.683950e-04	k: 750	n:1720000
KS ci ratio: 3.236345e-02	ci left: 8.320663e-03	ci right 8.594949e-03	k: 14546	n:1720000
YBX1   1720000 perm   1523 sec   (1130 perm/sec)   p_kst 8.456977e-03   p_cons 4.360465e-04   p_joint 1.906977e-04

Joint ci ratio: 2.151172e-01	ci left: 1.712722e-04	ci right 2.130900e-04	k: 331	n:1730000
Cons ci ratio: 1.423496e-01	ci left: 4.069585e-04	ci right 4.698780e-04	k: 757	n:1730000
KS ci ratio: 3.226153e-02	ci left: 8.325317e-03	ci right 8.598876e-03	k: 14638	n:1730000
YBX1   1730000 perm   1538 sec   (1125 perm/sec)   p_kst 8.461272e-03   p_cons 4.375723e-04   p_joint 1.913295e-04

Joint ci ratio: 2.226211e-01	ci left: 1.583369e-04	ci right 1.985300e-04	k: 309	n:1740000
Cons ci ratio: 1.417894e-01	ci left: 4.079454e-04	ci right 4.707483e-04	k: 763	n:1740000
KS ci ratio: 3.216497e-02	ci left: 8.327638e-03	ci right 8.600439e-03	k: 14726	n:1740000
YBX1   1740000 perm   1553 sec   (1120 perm/sec)   p_kst 8.463218e-03   p_cons 4.385057e-04   p_joint 1.775862e-04

Joint ci ratio: 2.219065e-01	ci left: 1.585114e-04	ci right 1.986020e-04	k: 311	n:1750000
Cons ci ratio: 1.414197e-01	ci left: 4.078190e-04	ci right 4.704250e-04	k: 767	n:1750000
KS ci ratio: 3.207909e-02	ci left: 8.324831e-03	ci right 8.596799e-03	k: 14805	n:1750000
YBX1   1750000 perm   1570 sec   (1115 perm/sec)   p_kst 8.460000e-03   p_cons 4.382857e-04   p_joint 1.777143e-04

Joint ci ratio: 2.215517e-01	ci left: 1.581474e-04	ci right 1.980732e-04	k: 312	n:1760000
Cons ci ratio: 1.410529e-01	ci left: 4.076942e-04	ci right 4.701051e-04	k: 771	n:1760000
KS ci ratio: 3.198848e-02	ci left: 8.324876e-03	ci right 8.596063e-03	k: 14889	n:1760000
YBX1   1760000 perm   1585 sec   (1110 perm/sec)   p_kst 8.459659e-03   p_cons 4.380682e-04   p_joint 1.772727e-04

Joint ci ratio: 2.504222e-01	ci left: 1.210983e-04	ci right 1.562778e-04	k: 244	n:1770000
Cons ci ratio: 1.405079e-01	ci left: 4.086613e-04	ci right 4.709583e-04	k: 777	n:1770000
KS ci ratio: 3.189112e-02	ci left: 8.328845e-03	ci right 8.599320e-03	k: 14980	n:1770000
YBX1   1770000 perm   1602 sec   (1105 perm/sec)   p_kst 8.463277e-03   p_cons 4.389831e-04   p_joint 1.378531e-04

Joint ci ratio: 2.489028e-01	ci left: 1.219979e-04	ci right 1.571904e-04	k: 247	n:1780000
Cons ci ratio: 1.401481e-01	ci left: 4.085338e-04	ci right 4.706385e-04	k: 781	n:1780000
KS ci ratio: 3.181168e-02	ci left: 8.323853e-03	ci right 8.593480e-03	k: 15055	n:1780000
YBX1   1780000 perm   1619 sec   (1099 perm/sec)   p_kst 8.457865e-03   p_cons 4.387640e-04   p_joint 1.387640e-04

Joint ci ratio: 2.479052e-01	ci left: 1.223642e-04	ci right 1.574990e-04	k: 249	n:1790000
Cons ci ratio: 1.397021e-01	ci left: 4.089470e-04	ci right 4.709002e-04	k: 786	n:1790000
KS ci ratio: 3.172437e-02	ci left: 8.323351e-03	ci right 8.592209e-03	k: 15138	n:1790000
YBX1   1790000 perm   1637 sec   (1094 perm/sec)   p_kst 8.456983e-03   p_cons 4.391061e-04   p_joint 1.391061e-04

Joint ci ratio: 2.479053e-01	ci left: 1.216843e-04	ci right 1.566240e-04	k: 249	n:1800000
Cons ci ratio: 1.394367e-01	ci left: 4.082835e-04	ci right 4.700090e-04	k: 789	n:1800000
KS ci ratio: 3.163673e-02	ci left: 8.323408e-03	ci right 8.591511e-03	k: 15222	n:1800000
YBX1   1800000 perm   1653 sec   (1089 perm/sec)   p_kst 8.456667e-03   p_cons 4.383333e-04   p_joint 1.383333e-04

Joint ci ratio: 2.474110e-01	ci left: 1.215303e-04	ci right 1.563454e-04	k: 250	n:1810000
Cons ci ratio: 1.389975e-01	ci left: 4.086940e-04	ci right 4.702708e-04	k: 794	n:1810000
KS ci ratio: 3.154565e-02	ci left: 8.325657e-03	ci right 8.593047e-03	k: 15310	n:1810000
YBX1   1810000 perm   1669 sec   (1084 perm/sec)   p_kst 8.458564e-03   p_cons 4.386740e-04   p_joint 1.381215e-04

Joint ci ratio: 2.469196e-01	ci left: 1.213779e-04	ci right 1.560697e-04	k: 251	n:1820000
Cons ci ratio: 1.387360e-01	ci left: 4.080395e-04	ci right 4.693925e-04	k: 797	n:1820000
KS ci ratio: 3.146463e-02	ci left: 8.322976e-03	ci right 8.589581e-03	k: 15389	n:1820000
YBX1   1820000 perm   1685 sec   (1080 perm/sec)   p_kst 8.455495e-03   p_cons 4.379121e-04   p_joint 1.379121e-04

Joint ci ratio: 2.469197e-01	ci left: 1.207147e-04	ci right 1.552169e-04	k: 251	n:1830000
Cons ci ratio: 1.384760e-01	ci left: 4.073923e-04	ci right 4.685237e-04	k: 800	n:1830000
KS ci ratio: 3.138730e-02	ci left: 8.318699e-03	ci right 8.584500e-03	k: 15465	n:1830000
YBX1   1830000 perm   1702 sec   (1075 perm/sec)   p_kst 8.450820e-03   p_cons 4.371585e-04   p_joint 1.371585e-04

Joint ci ratio: 2.464313e-01	ci left: 1.205685e-04	ci right 1.549504e-04	k: 252	n:1840000
Cons ci ratio: 1.381316e-01	ci left: 4.072769e-04	ci right 4.682264e-04	k: 804	n:1840000
KS ci ratio: 3.129227e-02	ci left: 8.324175e-03	ci right 8.589332e-03	k: 15559	n:1840000
YBX1   1840000 perm   1719 sec   (1071 perm/sec)   p_kst 8.455978e-03   p_cons 4.369565e-04   p_joint 1.369565e-04

Joint ci ratio: 2.464314e-01	ci left: 1.199168e-04	ci right 1.541128e-04	k: 252	n:1850000
Cons ci ratio: 1.379604e-01	ci left: 4.061191e-04	ci right 4.668139e-04	k: 806	n:1850000
KS ci ratio: 3.119508e-02	ci left: 8.331203e-03	ci right 8.595745e-03	k: 15656	n:1850000
YBX1   1850000 perm   1735 sec   (1066 perm/sec)   p_kst 8.462703e-03   p_cons 4.356757e-04   p_joint 1.362162e-04

Joint ci ratio: 1.928691e-01	ci left: 2.006324e-04	ci right 2.439595e-04	k: 412	n:1860000
Cons ci ratio: 1.375350e-01	ci left: 4.065312e-04	ci right 4.670849e-04	k: 811	n:1860000
KS ci ratio: 3.110576e-02	ci left: 8.334422e-03	ci right 8.598295e-03	k: 15746	n:1860000
YBX1   1860000 perm   1752 sec   (1062 perm/sec)   p_kst 8.465591e-03   p_cons 4.360215e-04   p_joint 2.215054e-04

Joint ci ratio: 1.921724e-01	ci left: 2.010865e-04	ci right 2.443364e-04	k: 415	n:1870000
Cons ci ratio: 1.374505e-01	ci left: 4.048736e-04	ci right 4.651403e-04	k: 812	n:1870000
KS ci ratio: 3.101622e-02	ci left: 8.338138e-03	ci right 8.601355e-03	k: 15837	n:1870000
YBX1   1870000 perm   1769 sec   (1057 perm/sec)   p_kst 8.468984e-03   p_cons 4.342246e-04   p_joint 2.219251e-04

Joint ci ratio: 1.921725e-01	ci left: 2.000169e-04	ci right 2.430367e-04	k: 415	n:1880000
Cons ci ratio: 1.372818e-01	ci left: 4.037473e-04	ci right 4.637665e-04	k: 814	n:1880000
KS ci ratio: 3.092548e-02	ci left: 8.342872e-03	ci right 8.605454e-03	k: 15930	n:1880000
YBX1   1880000 perm   1785 sec   (1053 perm/sec)   p_kst 8.473404e-03   p_cons 4.329787e-04   p_joint 2.207447e-04

Joint ci ratio: 1.938105e-01	ci left: 1.954338e-04	ci right 2.378684e-04	k: 408	n:1890000
Cons ci ratio: 1.366959e-01	ci left: 4.051878e-04	ci right 4.651433e-04	k: 821	n:1890000
KS ci ratio: 3.085011e-02	ci left: 8.339681e-03	ci right 8.601511e-03	k: 16008	n:1890000
YBX1   1890000 perm   1802 sec   (1049 perm/sec)   p_kst 8.469841e-03   p_cons 4.343915e-04   p_joint 2.158730e-04

Joint ci ratio: 1.938106e-01	ci left: 1.944052e-04	ci right 2.366165e-04	k: 408	n:1900000
Cons ci ratio: 1.363646e-01	ci left: 4.050886e-04	ci right 4.648723e-04	k: 825	n:1900000
KS ci ratio: 3.077239e-02	ci left: 8.338091e-03	ci right 8.599200e-03	k: 16089	n:1900000
YBX1   1900000 perm   1821 sec   (1043 perm/sec)   p_kst 8.467895e-03   p_cons 4.342105e-04   p_joint 2.147368e-04

Joint ci ratio: 1.938107e-01	ci left: 1.933873e-04	ci right 2.353777e-04	k: 408	n:1910000
Cons ci ratio: 1.358719e-01	ci left: 4.060021e-04	ci right 4.656866e-04	k: 831	n:1910000
KS ci ratio: 3.068664e-02	ci left: 8.341194e-03	ci right 8.601660e-03	k: 16179	n:1910000
YBX1   1910000 perm   1839 sec   (1039 perm/sec)   p_kst 8.470681e-03   p_cons 4.350785e-04   p_joint 2.136126e-04

Joint ci ratio: 1.931038e-01	ci left: 1.938669e-04	ci right 2.357899e-04	k: 411	n:1920000
Cons ci ratio: 1.351428e-01	ci left: 4.084162e-04	ci right 4.681075e-04	k: 840	n:1920000
KS ci ratio: 3.061679e-02	ci left: 8.335997e-03	ci right 8.595698e-03	k: 16253	n:1920000
YBX1   1920000 perm   1856 sec   (1034 perm/sec)   p_kst 8.465104e-03   p_cons 4.375000e-04   p_joint 2.140625e-04

Joint ci ratio: 1.928699e-01	ci left: 1.933555e-04	ci right 2.351113e-04	k: 412	n:1930000
Cons ci ratio: 1.345044e-01	ci left: 4.103053e-04	ci right 4.699668e-04	k: 848	n:1930000
KS ci ratio: 3.054459e-02	ci left: 8.332396e-03	ci right 8.591362e-03	k: 16330	n:1930000
YBX1   1930000 perm   1873 sec   (1031 perm/sec)   p_kst 8.461140e-03   p_cons 4.393782e-04   p_joint 2.134715e-04

Joint ci ratio: 1.926369e-01	ci left: 1.928494e-04	ci right 2.344397e-04	k: 413	n:1940000
Cons ci ratio: 1.343464e-01	ci left: 4.091866e-04	ci right 4.686099e-04	k: 850	n:1940000
KS ci ratio: 3.047383e-02	ci left: 8.328322e-03	ci right 8.586551e-03	k: 16406	n:1940000
YBX1   1940000 perm   1890 sec   (1026 perm/sec)   p_kst 8.456701e-03   p_cons 4.381443e-04   p_joint 2.128866e-04

Joint ci ratio: 1.912558e-01	ci left: 1.947896e-04	ci right 2.364620e-04	k: 419	n:1950000
Cons ci ratio: 1.337192e-01	ci left: 4.110532e-04	ci right 4.704468e-04	k: 858	n:1950000
KS ci ratio: 3.040357e-02	ci left: 8.324290e-03	ci right 8.581789e-03	k: 16482	n:1950000
YBX1   1950000 perm   1909 sec   (1022 perm/sec)   p_kst 8.452308e-03   p_cons 4.400000e-04   p_joint 2.148718e-04

Joint ci ratio: 1.950071e-01	ci left: 1.860271e-04	ci right 2.266982e-04	k: 403	n:1960000
Cons ci ratio: 1.334089e-01	ci left: 4.109286e-04	ci right 4.701555e-04	k: 862	n:1960000
KS ci ratio: 3.030795e-02	ci left: 8.334478e-03	ci right 8.591467e-03	k: 16586	n:1960000
YBX1   1960000 perm   1927 sec   (1017 perm/sec)   p_kst 8.462245e-03   p_cons 4.397959e-04   p_joint 2.056122e-04

Joint ci ratio: 1.947663e-01	ci left: 1.855656e-04	ci right 2.260798e-04	k: 404	n:1970000
Cons ci ratio: 1.331008e-01	ci left: 4.108055e-04	ci right 4.698671e-04	k: 866	n:1970000
KS ci ratio: 3.024981e-02	ci left: 8.324412e-03	ci right 8.580590e-03	k: 16650	n:1970000
YBX1   1970000 perm   1947 sec   (1012 perm/sec)   p_kst 8.451777e-03   p_cons 4.395939e-04   p_joint 2.050761e-04

Joint ci ratio: 1.942872e-01	ci left: 1.855893e-04	ci right 2.259973e-04	k: 406	n:1980000
Cons ci ratio: 1.326426e-01	ci left: 4.116603e-04	ci right 4.706249e-04	k: 872	n:1980000
KS ci ratio: 3.017289e-02	ci left: 8.324975e-03	ci right 8.580507e-03	k: 16735	n:1980000
YBX1   1980000 perm   1964 sec   (1008 perm/sec)   p_kst 8.452020e-03   p_cons 4.404040e-04   p_joint 2.050505e-04

Joint ci ratio: 1.747620e-01	ci left: 2.306763e-04	ci right 2.753218e-04	k: 502	n:1990000
Cons ci ratio: 1.324153e-01	ci left: 4.110492e-04	ci right 4.698175e-04	k: 875	n:1990000
KS ci ratio: 3.073119e-02	ci left: 7.985403e-03	ci right 8.235127e-03	k: 16138	n:1990000
YBX1   1990000 perm   1983 sec   (1003 perm/sec)   p_kst 8.109548e-03   p_cons 4.396985e-04   p_joint 2.522613e-04

Joint ci ratio: 1.747621e-01	ci left: 2.295229e-04	ci right 2.739452e-04	k: 502	n:2000000
Cons ci ratio: 1.317402e-01	ci left: 4.133453e-04	ci right 4.721170e-04	k: 884	n:2000000
KS ci ratio: 3.064579e-02	ci left: 7.990131e-03	ci right 8.239296e-03	k: 16228	n:2000000
YBX1   2000000 perm   2001 sec   (999 perm/sec)   p_kst 8.114000e-03   p_cons 4.420000e-04   p_joint 2.510000e-04

Joint ci ratio: 1.742433e-01	ci left: 2.298084e-04	ci right 2.741400e-04	k: 505	n:2010000
Cons ci ratio: 1.315175e-01	ci left: 4.127322e-04	ci right 4.713098e-04	k: 887	n:2010000
KS ci ratio: 3.057527e-02	ci left: 7.987407e-03	ci right 8.235904e-03	k: 16303	n:2010000
YBX1   2010000 perm   2019 sec   (995 perm/sec)   p_kst 8.110945e-03   p_cons 4.412935e-04   p_joint 2.512438e-04

Joint ci ratio: 1.737290e-01	ci left: 2.300912e-04	ci right 2.743326e-04	k: 508	n:2020000
Cons ci ratio: 1.308559e-01	ci left: 4.149983e-04	ci right 4.735781e-04	k: 896	n:2020000
KS ci ratio: 3.049585e-02	ci left: 7.989623e-03	ci right 8.237533e-03	k: 16388	n:2020000
YBX1   2020000 perm   2037 sec   (992 perm/sec)   p_kst 8.112871e-03   p_cons 4.435644e-04   p_joint 2.514851e-04

Joint ci ratio: 1.732193e-01	ci left: 2.303714e-04	ci right 2.745231e-04	k: 511	n:2030000
Cons ci ratio: 1.302042e-01	ci left: 4.172427e-04	ci right 4.758234e-04	k: 905	n:2030000
KS ci ratio: 3.040681e-02	ci left: 7.997197e-03	ci right 8.244604e-03	k: 16484	n:2030000
YBX1   2030000 perm   2055 sec   (988 perm/sec)   p_kst 8.120197e-03   p_cons 4.458128e-04   p_joint 2.517241e-04

Joint ci ratio: 1.730504e-01	ci left: 2.297111e-04	ci right 2.736889e-04	k: 512	n:2040000
Cons ci ratio: 1.298464e-01	ci left: 4.175686e-04	ci right 4.760216e-04	k: 910	n:2040000
KS ci ratio: 3.033977e-02	ci left: 7.993507e-03	ci right 8.240245e-03	k: 16557	n:2040000
YBX1   2040000 perm   2074 sec   (984 perm/sec)   p_kst 8.116176e-03   p_cons 4.460784e-04   p_joint 2.509804e-04

Joint ci ratio: 1.728821e-01	ci left: 2.290572e-04	ci right 2.728627e-04	k: 513	n:2050000
Cons ci ratio: 1.297041e-01	ci left: 4.164756e-04	ci right 4.747068e-04	k: 912	n:2050000
KS ci ratio: 3.026217e-02	ci left: 7.995664e-03	ci right 8.241826e-03	k: 16642	n:2050000
YBX1   2050000 perm   2093 sec   (979 perm/sec)   p_kst 8.118049e-03   p_cons 4.448780e-04   p_joint 2.502439e-04

Joint ci ratio: 1.725467e-01	ci left: 2.288742e-04	ci right 2.725509e-04	k: 515	n:2060000
Cons ci ratio: 1.292800e-01	ci left: 4.172722e-04	ci right 4.754093e-04	k: 918	n:2060000
KS ci ratio: 3.018152e-02	ci left: 7.999727e-03	ci right 8.245348e-03	k: 16731	n:2060000
YBX1   2060000 perm   2112 sec   (975 perm/sec)   p_kst 8.121845e-03   p_cons 4.456311e-04   p_joint 2.500000e-04

Joint ci ratio: 1.720473e-01	ci left: 2.291553e-04	ci right 2.727460e-04	k: 518	n:2070000
Cons ci ratio: 1.289996e-01	ci left: 4.171263e-04	ci right 4.751074e-04	k: 922	n:2070000
KS ci ratio: 3.009880e-02	ci left: 8.005191e-03	ci right 8.250294e-03	k: 16823	n:2070000
YBX1   2070000 perm   2130 sec   (972 perm/sec)   p_kst 8.127053e-03   p_cons 4.454106e-04   p_joint 2.502415e-04

Joint ci ratio: 1.717168e-01	ci left: 2.289737e-04	ci right 2.724376e-04	k: 520	n:2080000
Cons ci ratio: 1.287905e-01	ci left: 4.165167e-04	ci right 4.743120e-04	k: 925	n:2080000
KS ci ratio: 3.002482e-02	ci left: 8.006309e-03	ci right 8.250833e-03	k: 16906	n:2080000
YBX1   2080000 perm   2148 sec   (968 perm/sec)   p_kst 8.127885e-03   p_cons 4.447115e-04   p_joint 2.500000e-04

Joint ci ratio: 1.739007e-01	ci left: 2.219270e-04	ci right 2.646453e-04	k: 507	n:2090000
Cons ci ratio: 1.287211e-01	ci left: 4.149868e-04	ci right 4.725365e-04	k: 926	n:2090000
KS ci ratio: 2.995582e-02	ci left: 8.005042e-03	ci right 8.248956e-03	k: 16984	n:2090000
YBX1   2090000 perm   2167 sec   (965 perm/sec)   p_kst 8.126316e-03   p_cons 4.430622e-04   p_joint 2.425837e-04

Joint ci ratio: 1.727146e-01	ci left: 2.240590e-04	ci right 2.668628e-04	k: 514	n:2100000
Cons ci ratio: 1.281691e-01	ci left: 4.166979e-04	ci right 4.742181e-04	k: 934	n:2100000
KS ci ratio: 2.987936e-02	ci left: 8.008041e-03	ci right 8.251413e-03	k: 17071	n:2100000
YBX1   2100000 perm   2184 sec   (962 perm/sec)   p_kst 8.129048e-03   p_cons 4.447619e-04   p_joint 2.447619e-04

Joint ci ratio: 1.723802e-01	ci left: 2.239040e-04	ci right 2.665868e-04	k: 516	n:2110000
Cons ci ratio: 1.278278e-01	ci left: 4.170168e-04	ci right 4.744162e-04	k: 939	n:2110000
KS ci ratio: 2.980260e-02	ci left: 8.011484e-03	ci right 8.254324e-03	k: 17159	n:2110000
YBX1   2110000 perm   2202 sec   (958 perm/sec)   p_kst 8.132227e-03   p_cons 4.450237e-04   p_joint 2.445498e-04

Joint ci ratio: 1.712248e-01	ci left: 2.260078e-04	ci right 2.687730e-04	k: 523	n:2120000
Cons ci ratio: 1.276921e-01	ci left: 4.159630e-04	ci right 4.731519e-04	k: 941	n:2120000
KS ci ratio: 2.971427e-02	ci left: 8.021450e-03	ci right 8.263859e-03	k: 17261	n:2120000
YBX1   2120000 perm   2220 sec   (955 perm/sec)   p_kst 8.141981e-03   p_cons 4.438679e-04   p_joint 2.466981e-04

Joint ci ratio: 1.710617e-01	ci left: 2.253961e-04	ci right 2.680008e-04	k: 524	n:2130000
Cons ci ratio: 1.275568e-01	ci left: 4.149191e-04	ci right 4.718995e-04	k: 943	n:2130000
KS ci ratio: 2.965170e-02	ci left: 8.017808e-03	ci right 8.259589e-03	k: 17334	n:2130000
YBX1   2130000 perm   2238 sec   (952 perm/sec)   p_kst 8.138028e-03   p_cons 4.427230e-04   p_joint 2.460094e-04

Joint ci ratio: 1.707368e-01	ci left: 2.252375e-04	ci right 2.677230e-04	k: 526	n:2140000
Cons ci ratio: 1.274220e-01	ci left: 4.138849e-04	ci right 4.706587e-04	k: 945	n:2140000
KS ci ratio: 2.959295e-02	ci left: 8.012345e-03	ci right 8.253474e-03	k: 17403	n:2140000
YBX1   2140000 perm   2256 sec   (948 perm/sec)   p_kst 8.132243e-03   p_cons 4.415888e-04   p_joint 2.457944e-04

Joint ci ratio: 1.702529e-01	ci left: 2.255257e-04	ci right 2.679326e-04	k: 529	n:2150000
Cons ci ratio: 1.271535e-01	ci left: 4.137611e-04	ci right 4.703893e-04	k: 949	n:2150000
KS ci ratio: 2.951922e-02	ci left: 8.015245e-03	ci right 8.255850e-03	k: 17490	n:2150000
YBX1   2150000 perm   2274 sec   (945 perm/sec)   p_kst 8.134884e-03   p_cons 4.413953e-04   p_joint 2.460465e-04

Joint ci ratio: 1.692972e-01	ci left: 2.271413e-04	ci right 2.695878e-04	k: 535	n:2160000
Cons ci ratio: 1.270867e-01	ci left: 4.122938e-04	ci right 4.686893e-04	k: 950	n:2160000
KS ci ratio: 2.945533e-02	ci left: 8.013063e-03	ci right 8.253073e-03	k: 17566	n:2160000
YBX1   2160000 perm   2292 sec   (942 perm/sec)   p_kst 8.132407e-03   p_cons 4.398148e-04   p_joint 2.476852e-04

Joint ci ratio: 1.685129e-01	ci left: 2.283014e-04	ci right 2.707469e-04	k: 540	n:2170000
Cons ci ratio: 1.268868e-01	ci left: 4.117324e-04	ci right 4.679558e-04	k: 953	n:2170000
KS ci ratio: 2.938850e-02	ci left: 8.012732e-03	ci right 8.252178e-03	k: 17646	n:2170000
YBX1   2170000 perm   2311 sec   (939 perm/sec)   p_kst 8.131797e-03   p_cons 4.391705e-04   p_joint 2.488479e-04

Joint ci ratio: 1.682023e-01	ci left: 2.281329e-04	ci right 2.704610e-04	k: 542	n:2180000
Cons ci ratio: 1.266878e-01	ci left: 4.111762e-04	ci right 4.672290e-04	k: 956	n:2180000
KS ci ratio: 2.932129e-02	ci left: 8.012859e-03	ci right 8.251753e-03	k: 17727	n:2180000
YBX1   2180000 perm   2330 sec   (935 perm/sec)   p_kst 8.131651e-03   p_cons 4.385321e-04   p_joint 2.486239e-04

Joint ci ratio: 1.678934e-01	ci left: 2.279660e-04	ci right 2.701776e-04	k: 544	n:2190000
Cons ci ratio: 1.262924e-01	ci left: 4.119517e-04	ci right 4.679219e-04	k: 962	n:2190000
KS ci ratio: 2.925122e-02	ci left: 8.014800e-03	ci right 8.253171e-03	k: 17812	n:2190000
YBX1   2190000 perm   2351 sec   (932 perm/sec)   p_kst 8.133333e-03   p_cons 4.392694e-04   p_joint 2.484018e-04

Joint ci ratio: 1.675862e-01	ci left: 2.278007e-04	ci right 2.698968e-04	k: 546	n:2200000
Cons ci ratio: 1.262270e-01	ci left: 4.105194e-04	ci right 4.662639e-04	k: 963	n:2200000
KS ci ratio: 2.917919e-02	ci left: 8.018077e-03	ci right 8.255948e-03	k: 17900	n:2200000
YBX1   2200000 perm   2370 sec   (928 perm/sec)   p_kst 8.136364e-03   p_cons 4.377273e-04   p_joint 2.481818e-04

Joint ci ratio: 1.671285e-01	ci left: 2.280706e-04	ci right 2.700898e-04	k: 549	n:2210000
Cons ci ratio: 1.260311e-01	ci left: 4.099765e-04	ci right 4.655544e-04	k: 966	n:2210000
KS ci ratio: 2.912156e-02	ci left: 8.013688e-03	ci right 8.250952e-03	k: 17971	n:2210000
YBX1   2210000 perm   2389 sec   (925 perm/sec)   p_kst 8.131674e-03   p_cons 4.371041e-04   p_joint 2.484163e-04

Joint ci ratio: 1.855987e-01	ci left: 1.822582e-04	ci right 2.199667e-04	k: 445	n:2220000
Cons ci ratio: 1.259010e-01	ci left: 4.090022e-04	ci right 4.643866e-04	k: 968	n:2220000
KS ci ratio: 2.906509e-02	ci left: 8.008892e-03	ci right 8.245547e-03	k: 18041	n:2220000
YBX1   2220000 perm   2408 sec   (922 perm/sec)   p_kst 8.126577e-03   p_cons 4.360360e-04   p_joint 2.004505e-04

Joint ci ratio: 1.843626e-01	ci left: 1.840069e-04	ci right 2.217953e-04	k: 451	n:2230000
Cons ci ratio: 1.251923e-01	ci left: 4.119460e-04	ci right 4.673916e-04	k: 979	n:2230000
KS ci ratio: 2.899765e-02	ci left: 8.010373e-03	ci right 8.246513e-03	k: 18125	n:2230000
YBX1   2230000 perm   2427 sec   (919 perm/sec)   p_kst 8.127803e-03   p_cons 4.390135e-04   p_joint 2.022422e-04

Joint ci ratio: 1.841590e-01	ci left: 1.836113e-04	ci right 2.212721e-04	k: 452	n:2240000
Cons ci ratio: 1.249376e-01	ci left: 4.118368e-04	ci right 4.671466e-04	k: 983	n:2240000
KS ci ratio: 2.893387e-02	ci left: 8.010068e-03	ci right 8.245671e-03	k: 18205	n:2240000
YBX1   2240000 perm   2446 sec   (916 perm/sec)   p_kst 8.127232e-03   p_cons 4.388393e-04   p_joint 2.017857e-04

Joint ci ratio: 1.839561e-01	ci left: 1.832192e-04	ci right 2.207536e-04	k: 453	n:2250000
Cons ci ratio: 1.246213e-01	ci left: 4.121593e-04	ci right 4.673620e-04	k: 988	n:2250000
KS ci ratio: 2.887450e-02	ci left: 8.007560e-03	ci right 8.242598e-03	k: 18280	n:2250000
YBX1   2250000 perm   2468 sec   (912 perm/sec)   p_kst 8.124444e-03   p_cons 4.391111e-04   p_joint 2.013333e-04

Joint ci ratio: 1.837539e-01	ci left: 1.828306e-04	ci right 2.202396e-04	k: 454	n:2260000
Cons ci ratio: 1.245585e-01	ci left: 4.107642e-04	ci right 4.657503e-04	k: 989	n:2260000
KS ci ratio: 2.881787e-02	ci left: 8.003757e-03	ci right 8.238214e-03	k: 18352	n:2260000
YBX1   2260000 perm   2488 sec   (908 perm/sec)   p_kst 8.120354e-03   p_cons 4.376106e-04   p_joint 2.008850e-04

Joint ci ratio: 1.835523e-01	ci left: 1.824455e-04	ci right 2.197302e-04	k: 455	n:2270000
Cons ci ratio: 1.244957e-01	ci left: 4.093815e-04	ci right 4.641528e-04	k: 990	n:2270000
KS ci ratio: 2.875449e-02	ci left: 8.003924e-03	ci right 8.237862e-03	k: 18433	n:2270000
YBX1   2270000 perm   2509 sec   (905 perm/sec)   p_kst 8.120264e-03   p_cons 4.361233e-04   p_joint 2.004405e-04

Joint ci ratio: 1.835524e-01	ci left: 1.816453e-04	ci right 2.187665e-04	k: 455	n:2280000
Cons ci ratio: 1.241828e-01	ci left: 4.097107e-04	ci right 4.643782e-04	k: 995	n:2280000
KS ci ratio: 2.868605e-02	ci left: 8.007138e-03	ci right 8.240605e-03	k: 18521	n:2280000
YBX1   2280000 perm   2529 sec   (902 perm/sec)   p_kst 8.123246e-03   p_cons 4.364035e-04   p_joint 1.995614e-04

Joint ci ratio: 1.835525e-01	ci left: 1.808521e-04	ci right 2.178112e-04	k: 455	n:2290000
Cons ci ratio: 1.240584e-01	ci left: 4.087678e-04	ci right 4.632508e-04	k: 997	n:2290000
KS ci ratio: 2.862276e-02	ci left: 8.007724e-03	ci right 8.240684e-03	k: 18603	n:2290000
YBX1   2290000 perm   2549 sec   (898 perm/sec)   p_kst 8.123581e-03   p_cons 4.353712e-04   p_joint 1.986900e-04

Joint ci ratio: 1.829516e-01	ci left: 1.813103e-04	ci right 2.182283e-04	k: 458	n:2300000
Cons ci ratio: 1.237487e-01	ci left: 4.090971e-04	ci right 4.634779e-04	k: 1002	n:2300000
KS ci ratio: 2.856219e-02	ci left: 8.007010e-03	ci right 8.239448e-03	k: 18682	n:2300000
YBX1   2300000 perm   2569 sec   (895 perm/sec)   p_kst 8.122609e-03   p_cons 4.356522e-04   p_joint 1.991304e-04

Joint ci ratio: 1.825543e-01	ci left: 1.813516e-04	ci right 2.181889e-04	k: 460	n:2310000
Cons ci ratio: 1.234414e-01	ci left: 4.094237e-04	ci right 4.637029e-04	k: 1007	n:2310000
KS ci ratio: 2.851274e-02	ci left: 8.000285e-03	ci right 8.232119e-03	k: 18747	n:2310000
YBX1   2310000 perm   2589 sec   (892 perm/sec)   p_kst 8.115584e-03   p_cons 4.359307e-04   p_joint 1.991342e-04

Joint ci ratio: 1.823567e-01	ci left: 1.809812e-04	ci right 2.176992e-04	k: 461	n:2320000
Cons ci ratio: 1.231972e-01	ci left: 4.093299e-04	ci right 4.634815e-04	k: 1011	n:2320000
KS ci ratio: 2.845515e-02	ci left: 7.998326e-03	ci right 8.229628e-03	k: 18823	n:2320000
YBX1   2320000 perm   2610 sec   (889 perm/sec)   p_kst 8.113362e-03   p_cons 4.357759e-04   p_joint 1.987069e-04

Joint ci ratio: 1.821597e-01	ci left: 1.806141e-04	ci right 2.172136e-04	k: 462	n:2330000
Cons ci ratio: 1.230151e-01	ci left: 4.088210e-04	ci right 4.628195e-04	k: 1014	n:2330000
KS ci ratio: 2.839413e-02	ci left: 7.998516e-03	ci right 8.229319e-03	k: 18904	n:2330000
YBX1   2330000 perm   2630 sec   (886 perm/sec)   p_kst 8.113305e-03   p_cons 4.351931e-04   p_joint 1.982833e-04

Joint ci ratio: 1.815724e-01	ci left: 1.810659e-04	ci right 2.176257e-04	k: 465	n:2340000
Cons ci ratio: 1.227734e-01	ci left: 4.087308e-04	ci right 4.626036e-04	k: 1018	n:2340000
KS ci ratio: 2.832372e-02	ci left: 8.004220e-03	ci right 8.234606e-03	k: 18998	n:2340000
YBX1   2340000 perm   2651 sec   (883 perm/sec)   p_kst 8.118803e-03   p_cons 4.350427e-04   p_joint 1.987179e-04

Joint ci ratio: 1.809907e-01	ci left: 1.815141e-04	ci right 2.180340e-04	k: 468	n:2350000
Cons ci ratio: 1.226532e-01	ci left: 4.078164e-04	ci right 4.615122e-04	k: 1020	n:2350000
KS ci ratio: 2.824414e-02	ci left: 8.015370e-03	ci right 8.245419e-03	k: 19105	n:2350000
YBX1   2350000 perm   2671 sec   (880 perm/sec)   p_kst 8.129787e-03   p_cons 4.340426e-04   p_joint 1.991489e-04

Joint ci ratio: 1.807981e-01	ci left: 1.811495e-04	ci right 2.175531e-04	k: 469	n:2360000
Cons ci ratio: 1.225333e-01	ci left: 4.069099e-04	ci right 4.604301e-04	k: 1022	n:2360000
KS ci ratio: 2.818076e-02	ci left: 8.017591e-03	ci right 8.247178e-03	k: 19191	n:2360000
YBX1   2360000 perm   2692 sec   (877 perm/sec)   p_kst 8.131780e-03   p_cons 4.330508e-04   p_joint 1.987288e-04

Joint ci ratio: 1.804146e-01	ci left: 1.811909e-04	ci right 2.175171e-04	k: 471	n:2370000
Cons ci ratio: 1.222944e-01	ci left: 4.068290e-04	ci right 4.602268e-04	k: 1026	n:2370000
KS ci ratio: 2.812516e-02	ci left: 8.015603e-03	ci right 8.244673e-03	k: 19267	n:2370000
YBX1   2370000 perm   2712 sec   (874 perm/sec)   p_kst 8.129536e-03   p_cons 4.329114e-04   p_joint 1.987342e-04

Joint ci ratio: 1.800336e-01	ci left: 1.812320e-04	ci right 2.174814e-04	k: 473	n:2380000
Cons ci ratio: 1.221162e-01	ci left: 4.063416e-04	ci right 4.595921e-04	k: 1029	n:2380000
KS ci ratio: 2.806185e-02	ci left: 8.018222e-03	ci right 8.246843e-03	k: 19354	n:2380000
YBX1   2380000 perm   2732 sec   (871 perm/sec)   p_kst 8.131933e-03   p_cons 4.323529e-04   p_joint 1.987395e-04

Joint ci ratio: 1.794665e-01	ci left: 1.816725e-04	ci right 2.178831e-04	k: 476	n:2390000
Cons ci ratio: 1.217033e-01	ci left: 4.074810e-04	ci right 4.606872e-04	k: 1036	n:2390000
KS ci ratio: 2.799243e-02	ci left: 8.024559e-03	ci right 8.252786e-03	k: 19450	n:2390000
YBX1   2390000 perm   2753 sec   (868 perm/sec)   p_kst 8.138075e-03   p_cons 4.334728e-04   p_joint 1.991632e-04

Joint ci ratio: 1.789048e-01	ci left: 1.821095e-04	ci right 2.182812e-04	k: 479	n:2400000
Cons ci ratio: 1.214693e-01	ci left: 4.073991e-04	ci right 4.604850e-04	k: 1040	n:2400000
KS ci ratio: 2.793721e-02	ci left: 8.022982e-03	ci right 8.250707e-03	k: 19527	n:2400000
YBX1   2400000 perm   2774 sec   (865 perm/sec)   p_kst 8.136250e-03   p_cons 4.333333e-04   p_joint 1.995833e-04

Joint ci ratio: 1.785332e-01	ci left: 1.821466e-04	ci right 2.182424e-04	k: 481	n:2410000
Cons ci ratio: 1.210628e-01	ci left: 4.085252e-04	ci right 4.615669e-04	k: 1047	n:2410000
KS ci ratio: 2.787229e-02	ci left: 8.027188e-03	ci right 8.254494e-03	k: 19618	n:2410000
YBX1   2410000 perm   2795 sec   (862 perm/sec)   p_kst 8.140249e-03   p_cons 4.344398e-04   p_joint 1.995851e-04

Joint ci ratio: 1.783483e-01	ci left: 1.817887e-04	ci right 2.177723e-04	k: 482	n:2420000
Cons ci ratio: 1.209476e-01	ci left: 4.076385e-04	ci right 4.605111e-04	k: 1049	n:2420000
KS ci ratio: 2.782276e-02	ci left: 8.022742e-03	ci right 8.249512e-03	k: 19688	n:2420000
YBX1   2420000 perm   2815 sec   (860 perm/sec)   p_kst 8.135537e-03   p_cons 4.334711e-04   p_joint 1.991736e-04

Joint ci ratio: 1.862278e-01	ci left: 1.653303e-04	ci right 1.996654e-04	k: 442	n:2430000
Cons ci ratio: 1.207752e-01	ci left: 4.071582e-04	ci right 4.598878e-04	k: 1052	n:2430000
KS ci ratio: 2.776500e-02	ci left: 8.023237e-03	ci right 8.249542e-03	k: 19770	n:2430000
YBX1   2430000 perm   2836 sec   (857 perm/sec)   p_kst 8.135802e-03   p_cons 4.329218e-04   p_joint 1.818930e-04

Joint ci ratio: 1.605498e-01	ci left: 2.246519e-04	ci right 2.642550e-04	k: 595	n:2440000
Cons ci ratio: 1.206607e-01	ci left: 4.062844e-04	ci right 4.588475e-04	k: 1054	n:2440000
KS ci ratio: 2.770478e-02	ci left: 8.025357e-03	ci right 8.251223e-03	k: 19856	n:2440000
YBX1   2440000 perm   2856 sec   (854 perm/sec)   p_kst 8.137705e-03   p_cons 4.319672e-04   p_joint 2.438525e-04

Joint ci ratio: 1.604153e-01	ci left: 2.241267e-04	ci right 2.636010e-04	k: 596	n:2450000
Cons ci ratio: 1.203758e-01	ci left: 4.066054e-04	ci right 4.590769e-04	k: 1059	n:2450000
KS ci ratio: 2.764915e-02	ci left: 8.025027e-03	ci right 8.250424e-03	k: 19936	n:2450000
YBX1   2450000 perm   2877 sec   (851 perm/sec)   p_kst 8.137143e-03   p_cons 4.322449e-04   p_joint 2.432653e-04

Joint ci ratio: 1.443734e-01	ci left: 2.779626e-04	ci right 3.216018e-04	k: 736	n:2460000
Cons ci ratio: 1.201493e-01	ci left: 4.065296e-04	ci right 4.588857e-04	k: 1063	n:2460000
KS ci ratio: 2.758899e-02	ci left: 8.027527e-03	ci right 8.252495e-03	k: 20023	n:2460000
YBX1   2460000 perm   2898 sec   (849 perm/sec)   p_kst 8.139431e-03   p_cons 4.321138e-04   p_joint 2.991870e-04

Joint ci ratio: 1.442756e-01	ci left: 2.772275e-04	ci right 3.207193e-04	k: 737	n:2470000
Cons ci ratio: 1.200366e-01	ci left: 4.056692e-04	ci right 4.578619e-04	k: 1065	n:2470000
KS ci ratio: 2.752439e-02	ci left: 8.032821e-03	ci right 8.257403e-03	k: 20117	n:2470000
YBX1   2470000 perm   2919 sec   (846 perm/sec)   p_kst 8.144534e-03   p_cons 4.311741e-04   p_joint 2.983806e-04

Joint ci ratio: 1.442757e-01	ci left: 2.761096e-04	ci right 3.194261e-04	k: 737	n:2480000
Cons ci ratio: 1.198120e-01	ci left: 4.055979e-04	ci right 4.576769e-04	k: 1069	n:2480000
KS ci ratio: 2.746504e-02	ci left: 8.035271e-03	ci right 8.259429e-03	k: 20204	n:2480000
YBX1   2480000 perm   2940 sec   (844 perm/sec)   p_kst 8.146774e-03   p_cons 4.310484e-04   p_joint 2.971774e-04

Joint ci ratio: 1.438863e-01	ci left: 2.765493e-04	ci right 3.198075e-04	k: 741	n:2490000
Cons ci ratio: 1.195887e-01	ci left: 4.055273e-04	ci right 4.574934e-04	k: 1073	n:2490000
KS ci ratio: 2.741083e-02	ci left: 8.034909e-03	ci right 8.258607e-03	k: 20284	n:2490000
YBX1   2490000 perm   2961 sec   (841 perm/sec)   p_kst 8.146185e-03   p_cons 4.309237e-04   p_joint 2.975904e-04

Joint ci ratio: 1.435963e-01	ci left: 2.765999e-04	ci right 3.197714e-04	k: 744	n:2500000
Cons ci ratio: 1.194776e-01	ci left: 4.046813e-04	ci right 4.564873e-04	k: 1075	n:2500000
KS ci ratio: 2.735763e-02	ci left: 8.034153e-03	ci right 8.257389e-03	k: 20363	n:2500000
YBX1   2500000 perm   2981 sec   (839 perm/sec)   p_kst 8.145200e-03   p_cons 4.300000e-04   p_joint 2.976000e-04

Joint ci ratio: 1.433080e-01	ci left: 2.766502e-04	ci right 3.197355e-04	k: 747	n:2510000
Cons ci ratio: 1.190358e-01	ci left: 4.061612e-04	ci right 4.579509e-04	k: 1083	n:2510000
KS ci ratio: 2.730271e-02	ci left: 8.034590e-03	ci right 8.257384e-03	k: 20445	n:2510000
YBX1   2510000 perm   3002 sec   (836 perm/sec)   p_kst 8.145418e-03   p_cons 4.314741e-04   p_joint 2.976096e-04

Joint ci ratio: 1.432124e-01	ci left: 2.759350e-04	ci right 3.188778e-04	k: 748	n:2520000
Cons ci ratio: 1.186532e-01	ci left: 4.072447e-04	ci right 4.589940e-04	k: 1090	n:2520000
KS ci ratio: 2.724611e-02	ci left: 8.036207e-03	ci right 8.258576e-03	k: 20530	n:2520000
YBX1   2520000 perm   3024 sec   (833 perm/sec)   p_kst 8.146825e-03   p_cons 4.325397e-04   p_joint 2.968254e-04

Joint ci ratio: 1.430216e-01	ci left: 2.756066e-04	ci right 3.184362e-04	k: 750	n:2530000
Cons ci ratio: 1.183823e-01	ci left: 4.075527e-04	ci right 4.592146e-04	k: 1095	n:2530000
KS ci ratio: 2.718787e-02	ci left: 8.038989e-03	ci right 8.260953e-03	k: 20618	n:2530000
YBX1   2530000 perm   3046 sec   (831 perm/sec)   p_kst 8.149407e-03   p_cons 4.328063e-04   p_joint 2.964427e-04

Joint ci ratio: 1.425478e-01	ci left: 2.764197e-04	ci right 3.192213e-04	k: 755	n:2540000
Cons ci ratio: 1.178991e-01	ci left: 4.093868e-04	ci right 4.610546e-04	k: 1104	n:2540000
KS ci ratio: 2.713992e-02	ci left: 8.035885e-03	ci right 8.257365e-03	k: 20691	n:2540000
YBX1   2540000 perm   3069 sec   (828 perm/sec)   p_kst 8.146063e-03   p_cons 4.346457e-04   p_joint 2.972441e-04

Joint ci ratio: 1.422658e-01	ci left: 2.764703e-04	ci right 3.191878e-04	k: 758	n:2550000
Cons ci ratio: 1.177394e-01	ci left: 4.089232e-04	ci right 4.604577e-04	k: 1107	n:2550000
KS ci ratio: 2.708104e-02	ci left: 8.039427e-03	ci right 8.260516e-03	k: 20781	n:2550000
YBX1   2550000 perm   3092 sec   (825 perm/sec)   p_kst 8.149412e-03   p_cons 4.341176e-04   p_joint 2.972549e-04

Joint ci ratio: 1.419855e-01	ci left: 2.765205e-04	ci right 3.191545e-04	k: 761	n:2560000
Cons ci ratio: 1.175803e-01	ci left: 4.084632e-04	ci right 4.598654e-04	k: 1110	n:2560000
KS ci ratio: 2.703822e-02	ci left: 8.033629e-03	ci right 8.254205e-03	k: 20847	n:2560000
YBX1   2560000 perm   3113 sec   (822 perm/sec)   p_kst 8.143359e-03   p_cons 4.335938e-04   p_joint 2.972656e-04

Joint ci ratio: 1.412458e-01	ci left: 2.784471e-04	ci right 3.211356e-04	k: 769	n:2570000
Cons ci ratio: 1.174219e-01	ci left: 4.080068e-04	ci right 4.592776e-04	k: 1113	n:2570000
KS ci ratio: 2.698390e-02	ci left: 8.034834e-03	ci right 8.254992e-03	k: 20931	n:2570000
YBX1   2570000 perm   3135 sec   (820 perm/sec)   p_kst 8.144358e-03   p_cons 4.330739e-04   p_joint 2.992218e-04

Joint ci ratio: 1.409714e-01	ci left: 2.784896e-04	ci right 3.210948e-04	k: 772	n:2580000
Cons ci ratio: 1.170547e-01	ci left: 4.090590e-04	ci right 4.602902e-04	k: 1120	n:2580000
KS ci ratio: 2.693379e-02	ci left: 8.033720e-03	ci right 8.253433e-03	k: 21009	n:2580000
YBX1   2580000 perm   3157 sec   (817 perm/sec)   p_kst 8.143023e-03   p_cons 4.341085e-04   p_joint 2.992248e-04

Joint ci ratio: 1.406081e-01	ci left: 2.789044e-04	ci right 3.214538e-04	k: 776	n:2590000
Cons ci ratio: 1.167945e-01	ci left: 4.093537e-04	ci right 4.604999e-04	k: 1125	n:2590000
KS ci ratio: 2.686982e-02	ci left: 8.041052e-03	ci right 8.260436e-03	k: 21109	n:2590000
YBX1   2590000 perm   3179 sec   (815 perm/sec)   p_kst 8.150193e-03   p_cons 4.343629e-04   p_joint 2.996139e-04

Joint ci ratio: 1.401578e-01	ci left: 2.796872e-04	ci right 3.222080e-04	k: 781	n:2600000
Cons ci ratio: 1.167427e-01	ci left: 4.081526e-04	ci right 4.591246e-04	k: 1126	n:2600000
KS ci ratio: 2.680439e-02	ci left: 8.049475e-03	ci right 8.268545e-03	k: 21212	n:2600000
YBX1   2600000 perm   3202 sec   (812 perm/sec)   p_kst 8.158462e-03   p_cons 4.330769e-04   p_joint 3.003846e-04

Joint ci ratio: 1.398007e-01	ci left: 2.800945e-04	ci right 3.225597e-04	k: 785	n:2610000
Cons ci ratio: 1.166393e-01	ci left: 4.073327e-04	ci right 4.581542e-04	k: 1128	n:2610000
KS ci ratio: 2.675717e-02	ci left: 8.047178e-03	ci right 8.265793e-03	k: 21287	n:2610000
YBX1   2610000 perm   3224 sec   (810 perm/sec)   p_kst 8.155939e-03   p_cons 4.321839e-04   p_joint 3.007663e-04

Joint ci ratio: 1.391822e-01	ci left: 2.816040e-04	ci right 3.240934e-04	k: 792	n:2620000
Cons ci ratio: 1.163819e-01	ci left: 4.076308e-04	ci right 4.583695e-04	k: 1133	n:2620000
KS ci ratio: 2.669319e-02	ci left: 8.055135e-03	ci right 8.273435e-03	k: 21389	n:2620000
YBX1   2620000 perm   3246 sec   (807 perm/sec)   p_kst 8.163740e-03   p_cons 4.324427e-04   p_joint 3.022901e-04

Joint ci ratio: 1.387454e-01	ci left: 2.823683e-04	ci right 3.248283e-04	k: 797	n:2630000
Cons ci ratio: 1.161262e-01	ci left: 4.079268e-04	ci right 4.585830e-04	k: 1138	n:2630000
KS ci ratio: 2.664280e-02	ci left: 8.055100e-03	ci right 8.272981e-03	k: 21470	n:2630000
YBX1   2630000 perm   3268 sec   (805 perm/sec)   p_kst 8.163498e-03   p_cons 4.326996e-04   p_joint 3.030418e-04

Joint ci ratio: 1.496468e-01	ci left: 2.404024e-04	ci right 2.796468e-04	k: 685	n:2640000
Cons ci ratio: 1.160244e-01	ci left: 4.071171e-04	ci right 4.576255e-04	k: 1140	n:2640000
KS ci ratio: 2.658523e-02	ci left: 8.059581e-03	ci right 8.277106e-03	k: 21563	n:2640000
YBX1   2640000 perm   3290 sec   (803 perm/sec)   p_kst 8.167803e-03   p_cons 4.318182e-04   p_joint 2.594697e-04

Joint ci ratio: 1.493207e-01	ci left: 2.405850e-04	ci right 2.797659e-04	k: 688	n:2650000
Cons ci ratio: 1.158216e-01	ci left: 4.070465e-04	ci right 4.574518e-04	k: 1144	n:2650000
KS ci ratio: 2.653173e-02	ci left: 8.061780e-03	ci right 8.278919e-03	k: 21650	n:2650000
YBX1   2650000 perm   3312 sec   (800 perm/sec)   p_kst 8.169811e-03   p_cons 4.316981e-04   p_joint 2.596226e-04

Joint ci ratio: 1.487817e-01	ci left: 2.414901e-04	ci right 2.806639e-04	k: 693	n:2660000
Cons ci ratio: 1.155192e-01	ci left: 4.077067e-04	ci right 4.580530e-04	k: 1150	n:2660000
KS ci ratio: 2.647917e-02	ci left: 8.063589e-03	ci right 8.280341e-03	k: 21736	n:2660000
YBX1   2660000 perm   3334 sec   (798 perm/sec)   p_kst 8.171429e-03   p_cons 4.323308e-04   p_joint 2.605263e-04

Joint ci ratio: 1.482486e-01	ci left: 2.423887e-04	ci right 2.815549e-04	k: 698	n:2670000
Cons ci ratio: 1.152691e-01	ci left: 4.079983e-04	ci right 4.582641e-04	k: 1155	n:2670000
KS ci ratio: 2.641838e-02	ci left: 8.070595e-03	ci right 8.287028e-03	k: 21836	n:2670000
YBX1   2670000 perm   3356 sec   (796 perm/sec)   p_kst 8.178277e-03   p_cons 4.325843e-04   p_joint 2.614232e-04

Joint ci ratio: 1.479315e-01	ci left: 2.425622e-04	ci right 2.816652e-04	k: 701	n:2680000
Cons ci ratio: 1.149711e-01	ci left: 4.086502e-04	ci right 4.588574e-04	k: 1161	n:2680000
KS ci ratio: 2.637377e-02	ci left: 8.067910e-03	ci right 8.283901e-03	k: 21910	n:2680000
YBX1   2680000 perm   3380 sec   (793 perm/sec)   p_kst 8.175373e-03   p_cons 4.332090e-04   p_joint 2.615672e-04

Joint ci ratio: 1.478263e-01	ci left: 2.420185e-04	ci right 2.810036e-04	k: 702	n:2690000
Cons ci ratio: 1.147737e-01	ci left: 4.085754e-04	ci right 4.586813e-04	k: 1165	n:2690000
KS ci ratio: 2.632456e-02	ci left: 8.068200e-03	ci right 8.283790e-03	k: 21992	n:2690000
YBX1   2690000 perm   3402 sec   (791 perm/sec)   p_kst 8.175465e-03   p_cons 4.330855e-04   p_joint 2.609665e-04

Joint ci ratio: 1.474074e-01	ci left: 2.425489e-04	ci right 2.814990e-04	k: 706	n:2700000
Cons ci ratio: 1.145774e-01	ci left: 4.085011e-04	ci right 4.585064e-04	k: 1169	n:2700000
KS ci ratio: 2.627322e-02	ci left: 8.069961e-03	ci right 8.285170e-03	k: 22078	n:2700000
YBX1   2700000 perm   3425 sec   (788 perm/sec)   p_kst 8.177037e-03   p_cons 4.329630e-04   p_joint 2.614815e-04

Joint ci ratio: 1.470957e-01	ci left: 2.427201e-04	ci right 2.816081e-04	k: 709	n:2710000
Cons ci ratio: 1.143333e-01	ci left: 4.087859e-04	ci right 4.587123e-04	k: 1174	n:2710000
KS ci ratio: 2.622576e-02	ci left: 8.069509e-03	ci right 8.284312e-03	k: 22158	n:2710000
YBX1   2710000 perm   3448 sec   (786 perm/sec)   p_kst 8.176384e-03   p_cons 4.332103e-04   p_joint 2.616236e-04

Joint ci ratio: 1.488895e-01	ci left: 2.358091e-04	ci right 2.740916e-04	k: 692	n:2720000
Cons ci ratio: 1.139460e-01	ci left: 4.101403e-04	ci right 4.600510e-04	k: 1182	n:2720000
KS ci ratio: 2.616966e-02	ci left: 8.074539e-03	ci right 8.289010e-03	k: 22253	n:2720000
YBX1   2720000 perm   3471 sec   (784 perm/sec)   p_kst 8.181250e-03   p_cons 4.345588e-04   p_joint 2.544118e-04

Joint ci ratio: 1.659298e-01	ci left: 1.874365e-04	ci right 2.216970e-04	k: 557	n:2730000
Cons ci ratio: 1.138499e-01	ci left: 4.093496e-04	ci right 4.591193e-04	k: 1184	n:2730000
KS ci ratio: 2.611804e-02	ci left: 8.076986e-03	ci right 8.291092e-03	k: 22341	n:2730000
YBX1   2730000 perm   3493 sec   (782 perm/sec)   p_kst 8.183516e-03   p_cons 4.336996e-04   p_joint 2.040293e-04

Joint ci ratio: 1.657814e-01	ci left: 1.871022e-04	ci right 2.212680e-04	k: 558	n:2740000
Cons ci ratio: 1.135627e-01	ci left: 4.099832e-04	ci right 4.596957e-04	k: 1190	n:2740000
KS ci ratio: 2.607317e-02	ci left: 8.075427e-03	ci right 8.289118e-03	k: 22418	n:2740000
YBX1   2740000 perm   3516 sec   (779 perm/sec)   p_kst 8.181752e-03   p_cons 4.343066e-04   p_joint 2.036496e-04

Joint ci ratio: 1.653383e-01	ci left: 1.874676e-04	ci right 2.215994e-04	k: 561	n:2750000
Cons ci ratio: 1.133251e-01	ci left: 4.102589e-04	ci right 4.598938e-04	k: 1195	n:2750000
KS ci ratio: 2.601629e-02	ci left: 8.081466e-03	ci right 8.294844e-03	k: 22516	n:2750000
YBX1   2750000 perm   3540 sec   (777 perm/sec)   p_kst 8.187636e-03   p_cons 4.345455e-04   p_joint 2.040000e-04

Joint ci ratio: 1.648987e-01	ci left: 1.878304e-04	ci right 2.219283e-04	k: 564	n:2760000
Cons ci ratio: 1.132305e-01	ci left: 4.094766e-04	ci right 4.589727e-04	k: 1197	n:2760000
KS ci ratio: 2.597542e-02	ci left: 8.077743e-03	ci right 8.290682e-03	k: 22587	n:2760000
YBX1   2760000 perm   3563 sec   (775 perm/sec)   p_kst 8.183696e-03   p_cons 4.336957e-04   p_joint 2.043478e-04

Joint ci ratio: 1.643180e-01	ci left: 1.885369e-04	ci right 2.226306e-04	k: 568	n:2770000
Cons ci ratio: 1.128074e-01	ci left: 4.111556e-04	ci right 4.606566e-04	k: 1206	n:2770000
KS ci ratio: 2.592783e-02	ci left: 8.078351e-03	ci right 8.290910e-03	k: 22670	n:2770000
YBX1   2770000 perm   3587 sec   (772 perm/sec)   p_kst 8.184116e-03   p_cons 4.353791e-04   p_joint 2.050542e-04

Joint ci ratio: 1.638865e-01	ci left: 1.888935e-04	ci right 2.229532e-04	k: 571	n:2780000
Cons ci ratio: 1.126210e-01	ci left: 4.110749e-04	ci right 4.604790e-04	k: 1210	n:2780000
KS ci ratio: 2.587476e-02	ci left: 8.082529e-03	ci right 8.294757e-03	k: 22763	n:2780000
YBX1   2780000 perm   3611 sec   (770 perm/sec)   p_kst 8.188129e-03   p_cons 4.352518e-04   p_joint 2.053957e-04

Joint ci ratio: 1.633164e-01	ci left: 1.895915e-04	ci right 2.236464e-04	k: 575	n:2790000
Cons ci ratio: 1.124355e-01	ci left: 4.109948e-04	ci right 4.603026e-04	k: 1214	n:2790000
KS ci ratio: 2.582885e-02	ci left: 8.082404e-03	ci right 8.294246e-03	k: 22844	n:2790000
YBX1   2790000 perm   3634 sec   (768 perm/sec)   p_kst 8.187814e-03   p_cons 4.351254e-04   p_joint 2.060932e-04

Joint ci ratio: 1.631749e-01	ci left: 1.892569e-04	ci right 2.232194e-04	k: 576	n:2800000
Cons ci ratio: 1.122508e-01	ci left: 4.109154e-04	ci right 4.601273e-04	k: 1218	n:2800000
KS ci ratio: 2.578886e-02	ci left: 8.078731e-03	ci right 8.290145e-03	k: 22915	n:2800000
YBX1   2800000 perm   3657 sec   (766 perm/sec)   p_kst 8.183929e-03   p_cons 4.350000e-04   p_joint 2.057143e-04

Joint ci ratio: 1.628928e-01	ci left: 1.892661e-04	ci right 2.231658e-04	k: 578	n:2810000
Cons ci ratio: 1.120671e-01	ci left: 4.108367e-04	ci right 4.599533e-04	k: 1222	n:2810000
KS ci ratio: 2.573945e-02	ci left: 8.081097e-03	ci right 8.292161e-03	k: 23003	n:2810000
YBX1   2810000 perm   3680 sec   (764 perm/sec)   p_kst 8.186121e-03   p_cons 4.348754e-04   p_joint 2.056940e-04

Joint ci ratio: 1.624724e-01	ci left: 1.896155e-04	ci right 2.234815e-04	k: 581	n:2820000
Cons ci ratio: 1.118387e-01	ci left: 4.111032e-04	ci right 4.601449e-04	k: 1227	n:2820000
KS ci ratio: 2.569819e-02	ci left: 8.078512e-03	ci right 8.289166e-03	k: 23077	n:2820000
YBX1   2820000 perm   3703 sec   (761 perm/sec)   p_kst 8.183333e-03   p_cons 4.351064e-04   p_joint 2.060284e-04

Joint ci ratio: 1.623331e-01	ci left: 1.892844e-04	ci right 2.230595e-04	k: 582	n:2830000
Cons ci ratio: 1.114310e-01	ci left: 4.127420e-04	ci right 4.617879e-04	k: 1236	n:2830000
KS ci ratio: 2.566439e-02	ci left: 8.071382e-03	ci right 8.281569e-03	k: 23138	n:2830000
YBX1   2830000 perm   3728 sec   (759 perm/sec)   p_kst 8.175972e-03   p_cons 4.367491e-04   p_joint 2.056537e-04

Joint ci ratio: 1.619170e-01	ci left: 1.896314e-04	ci right 2.233733e-04	k: 585	n:2840000
Cons ci ratio: 1.111617e-01	ci left: 4.133425e-04	ci right 4.623333e-04	k: 1242	n:2840000
KS ci ratio: 2.561903e-02	ci left: 8.071650e-03	ci right 8.281467e-03	k: 23220	n:2840000
YBX1   2840000 perm   3751 sec   (757 perm/sec)   p_kst 8.176056e-03   p_cons 4.373239e-04   p_joint 2.059859e-04

Joint ci ratio: 1.617790e-01	ci left: 1.893027e-04	ci right 2.229546e-04	k: 586	n:2850000
Cons ci ratio: 1.109388e-01	ci left: 4.135979e-04	ci right 4.625142e-04	k: 1247	n:2850000
KS ci ratio: 2.557226e-02	ci left: 8.072962e-03	ci right 8.282425e-03	k: 23305	n:2850000
YBX1   2850000 perm   3775 sec   (755 perm/sec)   p_kst 8.177193e-03   p_cons 4.375439e-04   p_joint 2.056140e-04

Joint ci ratio: 1.615041e-01	ci left: 1.893118e-04	ci right 2.229026e-04	k: 588	n:2860000
Cons ci ratio: 1.108058e-01	ci left: 4.131716e-04	ci right 4.619751e-04	k: 1250	n:2860000
KS ci ratio: 2.553179e-02	ci left: 8.070444e-03	ci right 8.279505e-03	k: 23379	n:2860000
YBX1   2860000 perm   3799 sec   (753 perm/sec)   p_kst 8.174476e-03   p_cons 4.370629e-04   p_joint 2.055944e-04

Joint ci ratio: 1.609584e-01	ci left: 1.899897e-04	ci right 2.235758e-04	k: 592	n:2870000
Cons ci ratio: 1.106290e-01	ci left: 4.130871e-04	ci right 4.617977e-04	k: 1254	n:2870000
KS ci ratio: 2.548330e-02	ci left: 8.073137e-03	ci right 8.281864e-03	k: 23468	n:2870000
YBX1   2870000 perm   3823 sec   (751 perm/sec)   p_kst 8.177003e-03   p_cons 4.369338e-04   p_joint 2.062718e-04

Joint ci ratio: 1.609585e-01	ci left: 1.893300e-04	ci right 2.227995e-04	k: 592	n:2880000
Cons ci ratio: 1.104971e-01	ci left: 4.126656e-04	ci right 4.612647e-04	k: 1257	n:2880000
KS ci ratio: 2.544053e-02	ci left: 8.072361e-03	ci right 8.280713e-03	k: 23547	n:2880000
YBX1   2880000 perm   3847 sec   (749 perm/sec)   p_kst 8.176042e-03   p_cons 4.364583e-04   p_joint 2.055556e-04

Joint ci ratio: 1.606878e-01	ci left: 1.893391e-04	ci right 2.227485e-04	k: 594	n:2890000
Cons ci ratio: 1.102345e-01	ci left: 4.132565e-04	ci right 4.618020e-04	k: 1263	n:2890000
KS ci ratio: 2.539635e-02	ci left: 8.072622e-03	ci right 8.280614e-03	k: 23629	n:2890000
YBX1   2890000 perm   3871 sec   (747 perm/sec)   p_kst 8.176125e-03   p_cons 4.370242e-04   p_joint 2.055363e-04

Joint ci ratio: 1.604184e-01	ci left: 1.893481e-04	ci right 2.226977e-04	k: 596	n:2900000
Cons ci ratio: 1.100605e-01	ci left: 4.131728e-04	ci right 4.616269e-04	k: 1267	n:2900000
KS ci ratio: 2.535456e-02	ci left: 8.071512e-03	ci right 8.279127e-03	k: 23707	n:2900000
YBX1   2900000 perm   3895 sec   (745 perm/sec)   p_kst 8.174828e-03   p_cons 4.368966e-04   p_joint 2.055172e-04

Joint ci ratio: 1.600168e-01	ci left: 1.896871e-04	ci right 2.230047e-04	k: 599	n:2910000
Cons ci ratio: 1.098010e-01	ci left: 4.137581e-04	ci right 4.621591e-04	k: 1273	n:2910000
KS ci ratio: 2.531511e-02	ci left: 8.069043e-03	ci right 8.276268e-03	k: 23781	n:2910000
YBX1   2910000 perm   3920 sec   (742 perm/sec)   p_kst 8.172165e-03   p_cons 4.374570e-04   p_joint 2.058419e-04

Joint ci ratio: 1.597508e-01	ci left: 1.896950e-04	ci right 2.229533e-04	k: 601	n:2920000
Cons ci ratio: 1.095433e-01	ci left: 4.143396e-04	ci right 4.626875e-04	k: 1279	n:2920000
KS ci ratio: 2.528387e-02	ci left: 8.061486e-03	ci right 8.268258e-03	k: 23840	n:2920000
YBX1   2920000 perm   3946 sec   (740 perm/sec)   p_kst 8.164384e-03   p_cons 4.380137e-04   p_joint 2.058219e-04

Joint ci ratio: 1.594861e-01	ci left: 1.897029e-04	ci right 2.229022e-04	k: 603	n:2930000
Cons ci ratio: 1.093300e-01	ci left: 4.145852e-04	ci right 4.628615e-04	k: 1284	n:2930000
KS ci ratio: 2.523890e-02	ci left: 8.062800e-03	ci right 8.269232e-03	k: 23925	n:2930000
YBX1   2930000 perm   3971 sec   (738 perm/sec)   p_kst 8.165529e-03   p_cons 4.382253e-04   p_joint 2.058020e-04

Joint ci ratio: 1.590914e-01	ci left: 1.900374e-04	ci right 2.232050e-04	k: 606	n:2940000
Cons ci ratio: 1.091602e-01	ci left: 4.144985e-04	ci right 4.626849e-04	k: 1288	n:2940000
KS ci ratio: 2.520000e-02	ci left: 8.060387e-03	ci right 8.266434e-03	k: 23999	n:2940000
YBX1   2940000 perm   3997 sec   (736 perm/sec)   p_kst 8.162925e-03   p_cons 4.380952e-04   p_joint 2.061224e-04

Joint ci ratio: 1.586997e-01	ci left: 1.903697e-04	ci right 2.235058e-04	k: 609	n:2950000
Cons ci ratio: 1.089491e-01	ci left: 4.147421e-04	ci right 4.628576e-04	k: 1293	n:2950000
KS ci ratio: 2.516759e-02	ci left: 8.053948e-03	ci right 8.259562e-03	k: 24061	n:2950000
YBX1   2950000 perm   4021 sec   (734 perm/sec)   p_kst 8.156271e-03   p_cons 4.383051e-04   p_joint 2.064407e-04

Joint ci ratio: 1.584402e-01	ci left: 1.903754e-04	ci right 2.234531e-04	k: 611	n:2960000
Cons ci ratio: 1.087392e-01	ci left: 4.149841e-04	ci right 4.630290e-04	k: 1298	n:2960000
KS ci ratio: 2.512429e-02	ci left: 8.054603e-03	ci right 8.259875e-03	k: 24144	n:2960000
YBX1   2960000 perm   4045 sec   (732 perm/sec)   p_kst 8.156757e-03   p_cons 4.385135e-04   p_joint 2.064189e-04

Joint ci ratio: 1.584403e-01	ci left: 1.897344e-04	ci right 2.227008e-04	k: 611	n:2970000
Cons ci ratio: 1.085722e-01	ci left: 4.148971e-04	ci right 4.628534e-04	k: 1302	n:2970000
KS ci ratio: 2.507861e-02	ci left: 8.056926e-03	ci right 8.261879e-03	k: 24232	n:2970000
YBX1   2970000 perm   4070 sec   (730 perm/sec)   p_kst 8.158923e-03   p_cons 4.383838e-04   p_joint 2.057239e-04

Joint ci ratio: 1.581820e-01	ci left: 1.897423e-04	ci right 2.226512e-04	k: 613	n:2980000
Cons ci ratio: 1.083230e-01	ci left: 4.154636e-04	ci right 4.633682e-04	k: 1308	n:2980000
KS ci ratio: 2.504147e-02	ci left: 8.053899e-03	ci right 8.258468e-03	k: 24304	n:2980000
YBX1   2980000 perm   4095 sec   (728 perm/sec)   p_kst 8.155705e-03   p_cons 4.389262e-04   p_joint 2.057047e-04

Joint ci ratio: 1.576692e-01	ci left: 1.903926e-04	ci right 2.232971e-04	k: 617	n:2990000
Cons ci ratio: 1.081991e-01	ci left: 4.150503e-04	ci right 4.628490e-04	k: 1311	n:2990000
KS ci ratio: 2.500089e-02	ci left: 8.053219e-03	ci right 8.257434e-03	k: 24383	n:2990000
YBX1   2990000 perm   4120 sec   (726 perm/sec)   p_kst 8.154849e-03   p_cons 4.384615e-04   p_joint 2.063545e-04

Joint ci ratio: 1.575418e-01	ci left: 1.900782e-04	ci right 2.228993e-04	k: 618	n:3000000
Cons ci ratio: 1.079525e-01	ci left: 4.156127e-04	ci right 4.633602e-04	k: 1317	n:3000000
KS ci ratio: 2.496049e-02	ci left: 8.052544e-03	ci right 8.256407e-03	k: 24462	n:3000000
YBX1   3000000 perm   4146 sec   (724 perm/sec)   p_kst 8.154000e-03   p_cons 4.390000e-04   p_joint 2.060000e-04

Joint ci ratio: 1.575419e-01	ci left: 1.894467e-04	ci right 2.221588e-04	k: 618	n:3010000
Cons ci ratio: 1.076263e-01	ci left: 4.168181e-04	ci right 4.645502e-04	k: 1325	n:3010000
KS ci ratio: 2.492491e-02	ci left: 8.048902e-03	ci right 8.252378e-03	k: 24532	n:3010000
YBX1   3010000 perm   4171 sec   (722 perm/sec)   p_kst 8.150166e-03   p_cons 4.401993e-04   p_joint 2.053156e-04

Joint ci ratio: 1.574148e-01	ci left: 1.891374e-04	ci right 2.217673e-04	k: 619	n:3020000
Cons ci ratio: 1.074644e-01	ci left: 4.167268e-04	ci right 4.643720e-04	k: 1329	n:3020000
KS ci ratio: 2.487724e-02	ci left: 8.053182e-03	ci right 8.256372e-03	k: 24626	n:3020000
YBX1   3020000 perm   4197 sec   (719 perm/sec)   p_kst 8.154305e-03   p_cons 4.400662e-04   p_joint 2.049669e-04

Joint ci ratio: 1.571615e-01	ci left: 1.891473e-04	ci right 2.217214e-04	k: 621	n:3030000
Cons ci ratio: 1.071826e-01	ci left: 4.175997e-04	ci right 4.652117e-04	k: 1336	n:3030000
KS ci ratio: 2.483694e-02	ci left: 8.052843e-03	ci right 8.255690e-03	k: 24706	n:3030000
YBX1   3030000 perm   4225 sec   (717 perm/sec)   p_kst 8.153795e-03   p_cons 4.409241e-04   p_joint 2.049505e-04

Joint ci ratio: 1.571616e-01	ci left: 1.885251e-04	ci right 2.209921e-04	k: 621	n:3040000
Cons ci ratio: 1.070626e-01	ci left: 4.171864e-04	ci right 4.646947e-04	k: 1339	n:3040000
KS ci ratio: 2.479734e-02	ci left: 8.052179e-03	ci right 8.254681e-03	k: 24785	n:3040000
YBX1   3040000 perm   4251 sec   (715 perm/sec)   p_kst 8.152961e-03   p_cons 4.404605e-04   p_joint 2.042763e-04

Joint ci ratio: 1.569095e-01	ci left: 1.885370e-04	ci right 2.209490e-04	k: 623	n:3050000
Cons ci ratio: 1.069430e-01	ci left: 4.167759e-04	ci right 4.641810e-04	k: 1342	n:3050000
KS ci ratio: 2.475993e-02	ci left: 8.050216e-03	ci right 8.252359e-03	k: 24860	n:3050000
YBX1   3050000 perm   4276 sec   (713 perm/sec)   p_kst 8.150820e-03   p_cons 4.400000e-04   p_joint 2.042623e-04

Joint ci ratio: 1.567840e-01	ci left: 1.882348e-04	ci right 2.205666e-04	k: 624	n:3060000
Cons ci ratio: 1.068238e-01	ci left: 4.163680e-04	ci right 4.636707e-04	k: 1345	n:3060000
KS ci ratio: 2.473070e-02	ci left: 8.043069e-03	ci right 8.244791e-03	k: 24919	n:3060000
YBX1   3060000 perm   4301 sec   (711 perm/sec)   p_kst 8.143464e-03   p_cons 4.395425e-04   p_joint 2.039216e-04

Joint ci ratio: 1.561605e-01	ci left: 1.891866e-04	ci right 2.215405e-04	k: 629	n:3070000
Cons ci ratio: 1.067445e-01	ci left: 4.156458e-04	ci right 4.628292e-04	k: 1347	n:3070000
KS ci ratio: 2.468911e-02	ci left: 8.044063e-03	ci right 8.245466e-03	k: 25003	n:3070000
YBX1   3070000 perm   4327 sec   (710 perm/sec)   p_kst 8.144300e-03   p_cons 4.387622e-04   p_joint 2.048860e-04

Joint ci ratio: 1.556670e-01	ci left: 1.898203e-04	ci right 2.221705e-04	k: 633	n:3080000
Cons ci ratio: 1.064291e-01	ci left: 4.168245e-04	ci right 4.639931e-04	k: 1355	n:3080000
KS ci ratio: 2.464625e-02	ci left: 8.046019e-03	ci right 8.247116e-03	k: 25090	n:3080000
YBX1   3080000 perm   4351 sec   (708 perm/sec)   p_kst 8.146104e-03   p_cons 4.399351e-04   p_joint 2.055195e-04

Joint ci ratio: 1.555444e-01	ci left: 1.895171e-04	ci right 2.217877e-04	k: 634	n:3090000
Cons ci ratio: 1.061554e-01	ci left: 4.176807e-04	ci right 4.648171e-04	k: 1362	n:3090000
KS ci ratio: 2.460853e-02	ci left: 8.044745e-03	ci right 8.245499e-03	k: 25167	n:3090000
YBX1   3090000 perm   4380 sec   (705 perm/sec)   p_kst 8.144660e-03   p_cons 4.407767e-04   p_joint 2.051780e-04

Joint ci ratio: 1.554221e-01	ci left: 1.892157e-04	ci right 2.214074e-04	k: 635	n:3100000
Cons ci ratio: 1.060388e-01	ci left: 4.172754e-04	ci right 4.643111e-04	k: 1365	n:3100000
KS ci ratio: 2.456903e-02	ci left: 8.044763e-03	ci right 8.245190e-03	k: 25248	n:3100000
YBX1   3100000 perm   4407 sec   (703 perm/sec)   p_kst 8.144516e-03   p_cons 4.403226e-04   p_joint 2.048387e-04

Joint ci ratio: 1.551783e-01	ci left: 1.892254e-04	ci right 2.213635e-04	k: 637	n:3110000
Cons ci ratio: 1.058839e-01	ci left: 4.171858e-04	ci right 4.641384e-04	k: 1369	n:3110000
KS ci ratio: 2.452533e-02	ci left: 8.047657e-03	ci right 8.247794e-03	k: 25338	n:3110000
YBX1   3110000 perm   4432 sec   (702 perm/sec)   p_kst 8.147267e-03   p_cons 4.401929e-04   p_joint 2.048232e-04

Joint ci ratio: 1.551784e-01	ci left: 1.886189e-04	ci right 2.206540e-04	k: 637	n:3120000
Cons ci ratio: 1.056528e-01	ci left: 4.177209e-04	ci right 4.646247e-04	k: 1375	n:3120000
KS ci ratio: 2.447894e-02	ci left: 8.052444e-03	ci right 8.252317e-03	k: 25434	n:3120000
YBX1   3120000 perm   4458 sec   (700 perm/sec)   p_kst 8.151923e-03   p_cons 4.407051e-04   p_joint 2.041667e-04

Joint ci ratio: 1.550569e-01	ci left: 1.883234e-04	ci right 2.202810e-04	k: 638	n:3130000
Cons ci ratio: 1.054614e-01	ci left: 4.179416e-04	ci right 4.647798e-04	k: 1380	n:3130000
KS ci ratio: 2.443813e-02	ci left: 8.053708e-03	ci right 8.253274e-03	k: 25519	n:3130000
YBX1   3130000 perm   4485 sec   (698 perm/sec)   p_kst 8.153035e-03   p_cons 4.408946e-04   p_joint 2.038339e-04

Joint ci ratio: 1.548149e-01	ci left: 1.883359e-04	ci right 2.202411e-04	k: 640	n:3140000
Cons ci ratio: 1.052330e-01	ci left: 4.184710e-04	ci right 4.652608e-04	k: 1386	n:3140000
KS ci ratio: 2.439176e-02	ci left: 8.058763e-03	ci right 8.258070e-03	k: 25616	n:3140000
YBX1   3140000 perm   4513 sec   (696 perm/sec)   p_kst 8.157962e-03   p_cons 4.414013e-04   p_joint 2.038217e-04

Joint ci ratio: 1.545739e-01	ci left: 1.883484e-04	ci right 2.202014e-04	k: 642	n:3150000
Cons ci ratio: 1.050816e-01	ci left: 4.183790e-04	ci right 4.650870e-04	k: 1390	n:3150000
KS ci ratio: 2.435759e-02	ci left: 8.055897e-03	ci right 8.254850e-03	k: 25688	n:3150000
YBX1   3150000 perm   4539 sec   (694 perm/sec)   p_kst 8.154921e-03   p_cons 4.412698e-04   p_joint 2.038095e-04

Joint ci ratio: 1.544539e-01	ci left: 1.880565e-04	ci right 2.198332e-04	k: 643	n:3160000
Cons ci ratio: 1.049308e-01	ci left: 4.182876e-04	ci right 4.649143e-04	k: 1394	n:3160000
KS ci ratio: 2.431928e-02	ci left: 8.055881e-03	ci right 8.254516e-03	k: 25769	n:3160000
YBX1   3160000 perm   4565 sec   (692 perm/sec)   p_kst 8.154747e-03   p_cons 4.411392e-04   p_joint 2.034810e-04

Joint ci ratio: 1.543341e-01	ci left: 1.877666e-04	ci right 2.194674e-04	k: 644	n:3170000
Cons ci ratio: 1.047807e-01	ci left: 4.181968e-04	ci right 4.647426e-04	k: 1398	n:3170000
KS ci ratio: 2.428257e-02	ci left: 8.054924e-03	ci right 8.253232e-03	k: 25847	n:3170000
YBX1   3170000 perm   4590 sec   (691 perm/sec)   p_kst 8.153628e-03   p_cons 4.410095e-04   p_joint 2.031546e-04

Joint ci ratio: 1.540954e-01	ci left: 1.877808e-04	ci right 2.194304e-04	k: 646	n:3180000
Cons ci ratio: 1.045567e-01	ci left: 4.187191e-04	ci right 4.652173e-04	k: 1404	n:3180000
KS ci ratio: 2.424603e-02	ci left: 8.053973e-03	ci right 8.251955e-03	k: 25925	n:3180000
YBX1   3180000 perm   4616 sec   (689 perm/sec)   p_kst 8.152516e-03   p_cons 4.415094e-04   p_joint 2.031447e-04

Joint ci ratio: 1.537394e-01	ci left: 1.880963e-04	ci right 2.197191e-04	k: 649	n:3190000
Cons ci ratio: 1.044453e-01	ci left: 4.183224e-04	ci right 4.647239e-04	k: 1407	n:3190000
KS ci ratio: 2.420824e-02	ci left: 8.053964e-03	ci right 8.251633e-03	k: 26006	n:3190000
YBX1   3190000 perm   4642 sec   (687 perm/sec)   p_kst 8.152351e-03   p_cons 4.410658e-04   p_joint 2.034483e-04

Joint ci ratio: 1.533858e-01	ci left: 1.884100e-04	ci right 2.200060e-04	k: 652	n:3200000
Cons ci ratio: 1.042972e-01	ci left: 4.182325e-04	ci right 4.645543e-04	k: 1411	n:3200000
KS ci ratio: 2.417391e-02	ci left: 8.051780e-03	ci right 8.249111e-03	k: 26080	n:3200000
YBX1   3200000 perm   4668 sec   (686 perm/sec)   p_kst 8.150000e-03   p_cons 4.409375e-04   p_joint 2.037500e-04

Joint ci ratio: 1.532685e-01	ci left: 1.881226e-04	ci right 2.196441e-04	k: 653	n:3210000
Cons ci ratio: 1.041131e-01	ci left: 4.184466e-04	ci right 4.647053e-04	k: 1416	n:3210000
KS ci ratio: 2.414111e-02	ci left: 8.048681e-03	ci right 8.245665e-03	k: 26151	n:3210000
YBX1   3210000 perm   4694 sec   (684 perm/sec)   p_kst 8.146729e-03   p_cons 4.411215e-04   p_joint 2.034268e-04

Joint ci ratio: 1.529181e-01	ci left: 1.884344e-04	ci right 2.199293e-04	k: 656	n:3220000
Cons ci ratio: 1.040397e-01	ci left: 4.177521e-04	ci right 4.638994e-04	k: 1418	n:3220000
KS ci ratio: 2.410011e-02	ci left: 8.051159e-03	ci right 8.247864e-03	k: 26240	n:3220000
YBX1   3220000 perm   4721 sec   (682 perm/sec)   p_kst 8.149068e-03   p_cons 4.403727e-04   p_joint 2.037267e-04

Joint ci ratio: 1.529182e-01	ci left: 1.878510e-04	ci right 2.192484e-04	k: 656	n:3230000
Cons ci ratio: 1.037840e-01	ci left: 4.185696e-04	ci right 4.646866e-04	k: 1425	n:3230000
KS ci ratio: 2.406853e-02	ci left: 8.047466e-03	ci right 8.243820e-03	k: 26309	n:3230000
YBX1   3230000 perm   4746 sec   (681 perm/sec)   p_kst 8.145201e-03   p_cons 4.411765e-04   p_joint 2.030960e-04

Joint ci ratio: 1.526860e-01	ci left: 1.878649e-04	ci right 2.192126e-04	k: 658	n:3240000
Cons ci ratio: 1.037113e-01	ci left: 4.178790e-04	ci right 4.638857e-04	k: 1427	n:3240000
KS ci ratio: 2.403111e-02	ci left: 8.047785e-03	ci right 8.243837e-03	k: 26391	n:3240000
YBX1   3240000 perm   4772 sec   (679 perm/sec)   p_kst 8.145370e-03   p_cons 4.404321e-04   p_joint 2.030864e-04

Joint ci ratio: 1.522246e-01	ci left: 1.884707e-04	ci right 2.198158e-04	k: 662	n:3250000
Cons ci ratio: 1.034220e-01	ci left: 4.189910e-04	ci right 4.649837e-04	k: 1435	n:3250000
KS ci ratio: 2.399615e-02	ci left: 8.046572e-03	ci right 8.242306e-03	k: 26468	n:3250000
YBX1   3250000 perm   4799 sec   (677 perm/sec)   p_kst 8.144000e-03   p_cons 4.415385e-04   p_joint 2.036923e-04

Joint ci ratio: 1.522247e-01	ci left: 1.878925e-04	ci right 2.191415e-04	k: 662	n:3260000
Cons ci ratio: 1.033141e-01	ci left: 4.186022e-04	ci right 4.645014e-04	k: 1438	n:3260000
KS ci ratio: 2.395860e-02	ci left: 8.047197e-03	ci right 8.242635e-03	k: 26551	n:3260000
YBX1   3260000 perm   4825 sec   (676 perm/sec)   p_kst 8.144479e-03   p_cons 4.411043e-04   p_joint 2.030675e-04

Joint ci ratio: 1.521100e-01	ci left: 1.876121e-04	ci right 2.187888e-04	k: 663	n:3270000
Cons ci ratio: 1.030994e-01	ci left: 4.191095e-04	ci right 4.649631e-04	k: 1444	n:3270000
KS ci ratio: 2.391490e-02	ci left: 8.052074e-03	ci right 8.247269e-03	k: 26648	n:3270000
YBX1   3270000 perm   4851 sec   (674 perm/sec)   p_kst 8.149235e-03   p_cons 4.415902e-04   p_joint 2.027523e-04

Joint ci ratio: 1.519956e-01	ci left: 1.873334e-04	ci right 2.184382e-04	k: 664	n:3280000
Cons ci ratio: 1.029215e-01	ci left: 4.193169e-04	ci right 4.651091e-04	k: 1449	n:3280000
KS ci ratio: 2.387909e-02	ci left: 8.051770e-03	ci right 8.246661e-03	k: 26728	n:3280000
YBX1   3280000 perm   4878 sec   (672 perm/sec)   p_kst 8.148780e-03   p_cons 4.417683e-04   p_joint 2.024390e-04

Joint ci ratio: 1.517676e-01	ci left: 1.873488e-04	ci right 2.184053e-04	k: 666	n:3290000
Cons ci ratio: 1.028152e-01	ci left: 4.189308e-04	ci right 4.646307e-04	k: 1452	n:3290000
KS ci ratio: 2.383493e-02	ci left: 8.057208e-03	ci right 8.251866e-03	k: 26827	n:3290000
YBX1   3290000 perm   4904 sec   (671 perm/sec)   p_kst 8.154103e-03   p_cons 4.413374e-04   p_joint 2.024316e-04

Joint ci ratio: 1.514274e-01	ci left: 1.876557e-04	ci right 2.186870e-04	k: 669	n:3300000
Cons ci ratio: 1.025684e-01	ci left: 4.197280e-04	ci right 4.653984e-04	k: 1459	n:3300000
KS ci ratio: 2.380483e-02	ci left: 8.053275e-03	ci right 8.247589e-03	k: 26895	n:3300000
YBX1   3300000 perm   4929 sec   (669 perm/sec)   p_kst 8.150000e-03   p_cons 4.421212e-04   p_joint 2.027273e-04

Joint ci ratio: 1.512019e-01	ci left: 1.876701e-04	ci right 2.186534e-04	k: 671	n:3310000
Cons ci ratio: 1.023582e-01	ci left: 4.202262e-04	ci right 4.658515e-04	k: 1465	n:3310000
KS ci ratio: 2.376996e-02	ci left: 8.052670e-03	ci right 8.246681e-03	k: 26974	n:3310000
YBX1   3310000 perm   4956 sec   (668 perm/sec)   p_kst 8.149245e-03   p_cons 4.425982e-04   p_joint 2.027190e-04

Joint ci ratio: 1.509774e-01	ci left: 1.876845e-04	ci right 2.186200e-04	k: 673	n:3320000
Cons ci ratio: 1.022885e-01	ci left: 4.195474e-04	ci right 4.650662e-04	k: 1467	n:3320000
KS ci ratio: 2.373170e-02	ci left: 8.054465e-03	ci right 8.248202e-03	k: 27061	n:3320000
YBX1   3320000 perm   4982 sec   (666 perm/sec)   p_kst 8.150904e-03   p_cons 4.418675e-04   p_joint 2.027108e-04

Joint ci ratio: 1.508656e-01	ci left: 1.874098e-04	ci right 2.182751e-04	k: 674	n:3330000
Cons ci ratio: 1.021842e-01	ci left: 4.191654e-04	ci right 4.645935e-04	k: 1470	n:3330000
KS ci ratio: 2.369714e-02	ci left: 8.053860e-03	ci right 8.247297e-03	k: 27140	n:3330000
YBX1   3330000 perm   5008 sec   (665 perm/sec)   p_kst 8.150150e-03   p_cons 4.414414e-04   p_joint 2.024024e-04

Joint ci ratio: 1.507539e-01	ci left: 1.871368e-04	ci right 2.179323e-04	k: 675	n:3340000
Cons ci ratio: 1.021495e-01	ci left: 4.182022e-04	ci right 4.635096e-04	k: 1471	n:3340000
KS ci ratio: 2.365923e-02	ci left: 8.055641e-03	ci right 8.248806e-03	k: 27227	n:3340000
YBX1   3340000 perm   5035 sec   (663 perm/sec)   p_kst 8.151796e-03   p_cons 4.404192e-04   p_joint 2.020958e-04

Joint ci ratio: 1.506426e-01	ci left: 1.868654e-04	ci right 2.175915e-04	k: 676	n:3350000
Cons ci ratio: 1.020110e-01	ci left: 4.181173e-04	ci right 4.633505e-04	k: 1475	n:3350000
KS ci ratio: 2.362151e-02	ci left: 8.057411e-03	ci right 8.250307e-03	k: 27314	n:3350000
YBX1   3350000 perm   5062 sec   (662 perm/sec)   p_kst 8.153433e-03   p_cons 4.402985e-04   p_joint 2.017910e-04

Joint ci ratio: 1.505315e-01	ci left: 1.865957e-04	ci right 2.172527e-04	k: 677	n:3360000
Cons ci ratio: 1.019420e-01	ci left: 4.174530e-04	ci right 4.625819e-04	k: 1477	n:3360000
KS ci ratio: 2.357702e-02	ci left: 8.063904e-03	ci right 8.256587e-03	k: 27417	n:3360000
YBX1   3360000 perm   5088 sec   (660 perm/sec)   p_kst 8.159821e-03   p_cons 4.395833e-04   p_joint 2.014881e-04

Joint ci ratio: 1.504206e-01	ci left: 1.863275e-04	ci right 2.169159e-04	k: 678	n:3370000
Cons ci ratio: 1.018387e-01	ci left: 4.170818e-04	ci right 4.621221e-04	k: 1480	n:3370000
KS ci ratio: 2.353882e-02	ci left: 8.066230e-03	ci right 8.258652e-03	k: 27506	n:3370000
YBX1   3370000 perm   5114 sec   (659 perm/sec)   p_kst 8.162018e-03   p_cons 4.391691e-04   p_joint 2.011869e-04

Joint ci ratio: 1.500894e-01	ci left: 1.866305e-04	ci right 2.171951e-04	k: 681	n:3380000
Cons ci ratio: 1.017701e-01	ci left: 4.164244e-04	ci right 4.613617e-04	k: 1482	n:3380000
KS ci ratio: 2.350940e-02	ci left: 8.062659e-03	ci right 8.254753e-03	k: 27575	n:3380000
YBX1   3380000 perm   5141 sec   (658 perm/sec)   p_kst 8.158284e-03   p_cons 4.384615e-04   p_joint 2.014793e-04

Joint ci ratio: 1.499795e-01	ci left: 1.863639e-04	ci right 2.168605e-04	k: 682	n:3390000
Cons ci ratio: 1.016673e-01	ci left: 4.160585e-04	ci right 4.609082e-04	k: 1485	n:3390000
KS ci ratio: 2.347495e-02	ci left: 8.062629e-03	ci right 8.254437e-03	k: 27656	n:3390000
YBX1   3390000 perm   5168 sec   (656 perm/sec)   p_kst 8.158112e-03   p_cons 4.380531e-04   p_joint 2.011799e-04

Joint ci ratio: 1.496512e-01	ci left: 1.866650e-04	ci right 2.171380e-04	k: 685	n:3400000
Cons ci ratio: 1.014627e-01	ci left: 4.165547e-04	ci right 4.613621e-04	k: 1491	n:3400000
KS ci ratio: 2.343682e-02	ci left: 8.065231e-03	ci right 8.256784e-03	k: 27746	n:3400000
YBX1   3400000 perm   5194 sec   (655 perm/sec)   p_kst 8.160588e-03   p_cons 4.385294e-04   p_joint 2.014706e-04

Joint ci ratio: 1.494335e-01	ci left: 1.866822e-04	ci right 2.171097e-04	k: 687	n:3410000
Cons ci ratio: 1.012592e-01	ci left: 4.170480e-04	ci right 4.618132e-04	k: 1497	n:3410000
KS ci ratio: 2.340184e-02	ci left: 8.065777e-03	ci right 8.257054e-03	k: 27829	n:3410000
YBX1   3410000 perm   5221 sec   (653 perm/sec)   p_kst 8.160997e-03   p_cons 4.390029e-04   p_joint 2.014663e-04

Joint ci ratio: 1.491087e-01	ci left: 1.869808e-04	ci right 2.173848e-04	k: 690	n:3420000
Cons ci ratio: 1.011918e-01	ci left: 4.163986e-04	ci right 4.610625e-04	k: 1499	n:3420000
KS ci ratio: 2.337250e-02	ci left: 8.062541e-03	ci right 8.253498e-03	k: 27899	n:3420000
YBX1   3420000 perm   5249 sec   (652 perm/sec)   p_kst 8.157602e-03   p_cons 4.383041e-04   p_joint 2.017544e-04

Joint ci ratio: 1.462778e-01	ci left: 1.940165e-04	ci right 2.249133e-04	k: 717	n:3430000
Cons ci ratio: 1.010907e-01	ci left: 4.160371e-04	ci right 4.606151e-04	k: 1502	n:3430000
KS ci ratio: 2.333991e-02	ci left: 8.061643e-03	ci right 8.252309e-03	k: 27977	n:3430000
YBX1   3430000 perm   5276 sec   (650 perm/sec)   p_kst 8.156560e-03   p_cons 4.379009e-04   p_joint 2.090379e-04

Joint ci ratio: 1.461760e-01	ci left: 1.937326e-04	ci right 2.245609e-04	k: 718	n:3440000
Cons ci ratio: 1.008561e-01	ci left: 4.168112e-04	ci right 4.613623e-04	k: 1509	n:3440000
KS ci ratio: 2.330452e-02	ci left: 8.062773e-03	ci right 8.253173e-03	k: 28062	n:3440000
YBX1   3440000 perm   5303 sec   (649 perm/sec)   p_kst 8.157558e-03   p_cons 4.386628e-04   p_joint 2.087209e-04

Joint ci ratio: 1.461761e-01	ci left: 1.931710e-04	ci right 2.239100e-04	k: 718	n:3450000
Cons ci ratio: 1.006895e-01	ci left: 4.170158e-04	ci right 4.615108e-04	k: 1514	n:3450000
KS ci ratio: 2.326930e-02	ci left: 8.063897e-03	ci right 8.254031e-03	k: 28147	n:3450000
YBX1   3450000 perm   5330 sec   (647 perm/sec)   p_kst 8.158551e-03   p_cons 4.388406e-04   p_joint 2.081159e-04

Joint ci ratio: 1.460746e-01	ci left: 1.928912e-04	ci right 2.235624e-04	k: 719	n:3460000
Cons ci ratio: 1.005238e-01	ci left: 4.172193e-04	ci right 4.616584e-04	k: 1519	n:3460000
KS ci ratio: 2.323589e-02	ci left: 8.063865e-03	ci right 8.253722e-03	k: 28228	n:3460000
YBX1   3460000 perm   5357 sec   (646 perm/sec)   p_kst 8.158382e-03   p_cons 4.390173e-04   p_joint 2.078035e-04

Joint ci ratio: 1.456704e-01	ci left: 1.934460e-04	ci right 2.241129e-04	k: 723	n:3470000
Cons ci ratio: 1.002274e-01	ci left: 4.185455e-04	ci right 4.629867e-04	k: 1528	n:3470000
KS ci ratio: 2.320015e-02	ci left: 8.065553e-03	ci right 8.255154e-03	k: 28315	n:3470000
YBX1   3470000 perm   5385 sec   (644 perm/sec)   p_kst 8.159942e-03   p_cons 4.403458e-04   p_joint 2.083573e-04

Joint ci ratio: 1.453695e-01	ci left: 1.937208e-04	ci right 2.243623e-04	k: 726	n:3480000
Cons ci ratio: 1.001293e-01	ci left: 4.181832e-04	ci right 4.625399e-04	k: 1531	n:3480000
KS ci ratio: 2.316499e-02	ci left: 8.066946e-03	ci right 8.256288e-03	k: 28401	n:3480000
YBX1   3480000 perm   5411 sec   (643 perm/sec)   p_kst 8.161207e-03   p_cons 4.399425e-04   p_joint 2.086207e-04

Joint ci ratio: 1.451700e-01	ci left: 1.937179e-04	ci right 2.243133e-04	k: 728	n:3490000
Cons ci ratio: 9.990125e-02	ci left: 4.189406e-04	ci right 4.632705e-04	k: 1538	n:3490000
KS ci ratio: 2.313653e-02	ci left: 8.063772e-03	ci right 8.252805e-03	k: 28471	n:3490000
YBX1   3490000 perm   5438 sec   (642 perm/sec)   p_kst 8.157880e-03   p_cons 4.406877e-04   p_joint 2.085960e-04

Joint ci ratio: 1.449713e-01	ci left: 1.937152e-04	ci right 2.242646e-04	k: 730	n:3500000
Cons ci ratio: 9.970705e-02	ci left: 4.194151e-04	ci right 4.637039e-04	k: 1544	n:3500000
KS ci ratio: 2.309961e-02	ci left: 8.066583e-03	ci right 8.255375e-03	k: 28562	n:3500000
YBX1   3500000 perm   5466 sec   (640 perm/sec)   p_kst 8.160571e-03   p_cons 4.411429e-04   p_joint 2.085714e-04

Joint ci ratio: 1.448722e-01	ci left: 1.934378e-04	ci right 2.239209e-04	k: 731	n:3510000
Cons ci ratio: 9.957824e-02	ci left: 4.193314e-04	ci right 4.635508e-04	k: 1548	n:3510000
KS ci ratio: 2.306328e-02	ci left: 8.069094e-03	ci right 8.257645e-03	k: 28652	n:3510000
YBX1   3510000 perm   5495 sec   (639 perm/sec)   p_kst 8.162963e-03   p_cons 4.410256e-04   p_joint 2.082621e-04

Joint ci ratio: 1.448723e-01	ci left: 1.928883e-04	ci right 2.232848e-04	k: 731	n:3520000
Cons ci ratio: 9.948197e-02	ci left: 4.189712e-04	ci right 4.631074e-04	k: 1551	n:3520000
KS ci ratio: 2.303439e-02	ci left: 8.066507e-03	ci right 8.254758e-03	k: 28724	n:3520000
YBX1   3520000 perm   5523 sec   (637 perm/sec)   p_kst 8.160227e-03   p_cons 4.406250e-04   p_joint 2.076705e-04

Joint ci ratio: 1.446748e-01	ci left: 1.928879e-04	ci right 2.232393e-04	k: 733	n:3530000
Cons ci ratio: 9.944999e-02	ci left: 4.180605e-04	ci right 4.620858e-04	k: 1552	n:3530000
KS ci ratio: 2.300722e-02	ci left: 8.062808e-03	ci right 8.250748e-03	k: 28792	n:3530000
YBX1   3530000 perm   5550 sec   (636 perm/sec)   p_kst 8.156374e-03   p_cons 4.396601e-04   p_joint 2.076487e-04

Joint ci ratio: 1.446748e-01	ci left: 1.923430e-04	ci right 2.226087e-04	k: 733	n:3540000
Cons ci ratio: 9.925841e-02	ci left: 4.185323e-04	ci right 4.625175e-04	k: 1558	n:3540000
KS ci ratio: 2.297894e-02	ci left: 8.059973e-03	ci right 8.247613e-03	k: 28863	n:3540000
YBX1   3540000 perm   5578 sec   (635 perm/sec)   p_kst 8.153390e-03   p_cons 4.401130e-04   p_joint 2.070621e-04

Joint ci ratio: 1.444781e-01	ci left: 1.923442e-04	ci right 2.225654e-04	k: 735	n:3550000
Cons ci ratio: 9.922663e-02	ci left: 4.176281e-04	ci right 4.615033e-04	k: 1559	n:3550000
KS ci ratio: 2.294636e-02	ci left: 8.060235e-03	ci right 8.247611e-03	k: 28945	n:3550000
YBX1   3550000 perm   5607 sec   (633 perm/sec)   p_kst 8.153521e-03   p_cons 4.391549e-04   p_joint 2.070423e-04

Joint ci ratio: 1.442822e-01	ci left: 1.923454e-04	ci right 2.225223e-04	k: 737	n:3560000
Cons ci ratio: 9.909967e-02	ci left: 4.175507e-04	ci right 4.613584e-04	k: 1563	n:3560000
KS ci ratio: 2.291274e-02	ci left: 8.061333e-03	ci right 8.248457e-03	k: 29030	n:3560000
YBX1   3560000 perm   5635 sec   (632 perm/sec)   p_kst 8.154494e-03   p_cons 4.390449e-04   p_joint 2.070225e-04

Joint ci ratio: 1.441846e-01	ci left: 1.920766e-04	ci right 2.221892e-04	k: 738	n:3570000
Cons ci ratio: 9.909973e-02	ci left: 4.163811e-04	ci right 4.600661e-04	k: 1563	n:3570000
KS ci ratio: 2.287213e-02	ci left: 8.067439e-03	ci right 8.254368e-03	k: 29133	n:3570000
YBX1   3570000 perm   5664 sec   (630 perm/sec)   p_kst 8.160504e-03   p_cons 4.378151e-04   p_joint 2.067227e-04

Joint ci ratio: 1.438928e-01	ci left: 1.923479e-04	ci right 2.224367e-04	k: 741	n:3580000
Cons ci ratio: 9.900484e-02	ci left: 4.160352e-04	ci right 4.596398e-04	k: 1566	n:3580000
KS ci ratio: 2.284158e-02	ci left: 8.066568e-03	ci right 8.253224e-03	k: 29211	n:3580000
YBX1   3580000 perm   5692 sec   (629 perm/sec)   p_kst 8.159497e-03   p_cons 4.374302e-04   p_joint 2.069832e-04

Joint ci ratio: 1.437959e-01	ci left: 1.920806e-04	ci right 2.221057e-04	k: 742	n:3590000
Cons ci ratio: 9.900490e-02	ci left: 4.148763e-04	ci right 4.583594e-04	k: 1566	n:3590000
KS ci ratio: 2.280802e-02	ci left: 8.067917e-03	ci right 8.254326e-03	k: 29297	n:3590000
YBX1   3590000 perm   5721 sec   (627 perm/sec)   p_kst 8.160724e-03   p_cons 4.362117e-04   p_joint 2.066852e-04

Joint ci ratio: 1.436993e-01	ci left: 1.918149e-04	ci right 2.217765e-04	k: 743	n:3600000
Cons ci ratio: 9.884732e-02	ci left: 4.150784e-04	ci right 4.585095e-04	k: 1571	n:3600000
KS ci ratio: 2.278008e-02	ci left: 8.065392e-03	ci right 8.251512e-03	k: 29369	n:3600000
YBX1   3600000 perm   5750 sec   (626 perm/sec)   p_kst 8.158056e-03   p_cons 4.363889e-04   p_joint 2.063889e-04

Joint ci ratio: 1.433145e-01	ci left: 1.923518e-04	ci right 2.223099e-04	k: 747	n:3610000
Cons ci ratio: 9.875315e-02	ci left: 4.147391e-04	ci right 4.580909e-04	k: 1574	n:3610000
KS ci ratio: 2.274717e-02	ci left: 8.066462e-03	ci right 8.252334e-03	k: 29454	n:3610000
YBX1   3610000 perm   5779 sec   (625 perm/sec)   p_kst 8.159003e-03   p_cons 4.360111e-04   p_joint 2.069252e-04

Joint ci ratio: 1.432188e-01	ci left: 1.920868e-04	ci right 2.219819e-04	k: 748	n:3620000
Cons ci ratio: 9.865925e-02	ci left: 4.144017e-04	ci right 4.576746e-04	k: 1577	n:3620000
KS ci ratio: 2.271751e-02	ci left: 8.065329e-03	ci right 8.250929e-03	k: 29531	n:3620000
YBX1   3620000 perm   5808 sec   (623 perm/sec)   p_kst 8.157735e-03   p_cons 4.356354e-04   p_joint 2.066298e-04

Joint ci ratio: 1.431234e-01	ci left: 1.918232e-04	ci right 2.216558e-04	k: 749	n:3630000
Cons ci ratio: 9.856562e-02	ci left: 4.140662e-04	ci right 4.572607e-04	k: 1580	n:3630000
KS ci ratio: 2.268797e-02	ci left: 8.064202e-03	ci right 8.249532e-03	k: 29608	n:3630000
YBX1   3630000 perm   5837 sec   (622 perm/sec)   p_kst 8.156474e-03   p_cons 4.352617e-04   p_joint 2.063361e-04

Joint ci ratio: 1.428379e-01	ci left: 1.920909e-04	ci right 2.219005e-04	k: 752	n:3640000
Cons ci ratio: 9.847226e-02	ci left: 4.137325e-04	ci right 4.568489e-04	k: 1583	n:3640000
KS ci ratio: 2.266278e-02	ci left: 8.060076e-03	ci right 8.245103e-03	k: 29674	n:3640000
YBX1   3640000 perm   5867 sec   (620 perm/sec)   p_kst 8.152198e-03   p_cons 4.348901e-04   p_joint 2.065934e-04

Joint ci ratio: 1.423660e-01	ci left: 1.928856e-04	ci right 2.227112e-04	k: 757	n:3650000
Cons ci ratio: 9.828627e-02	ci left: 4.142024e-04	ci right 4.572816e-04	k: 1589	n:3650000
KS ci ratio: 2.262693e-02	ci left: 8.063602e-03	ci right 8.248413e-03	k: 29768	n:3650000
YBX1   3650000 perm   5896 sec   (619 perm/sec)   p_kst 8.155616e-03   p_cons 4.353425e-04   p_joint 2.073973e-04

Joint ci ratio: 1.421786e-01	ci left: 1.928856e-04	ci right 2.226686e-04	k: 759	n:3660000
Cons ci ratio: 9.810132e-02	ci left: 4.146697e-04	ci right 4.577117e-04	k: 1595	n:3660000
KS ci ratio: 2.259316e-02	ci left: 8.065750e-03	ci right 8.250330e-03	k: 29857	n:3660000
YBX1   3660000 perm   5925 sec   (618 perm/sec)   p_kst 8.157650e-03   p_cons 4.357923e-04   p_joint 2.073770e-04

Joint ci ratio: 1.421786e-01	ci left: 1.923601e-04	ci right 2.220619e-04	k: 759	n:3670000
Cons ci ratio: 9.797862e-02	ci left: 4.146031e-04	ci right 4.575812e-04	k: 1599	n:3670000
KS ci ratio: 2.255878e-02	ci left: 8.068428e-03	ci right 8.252785e-03	k: 29948	n:3670000
YBX1   3670000 perm   5954 sec   (616 perm/sec)   p_kst 8.160218e-03   p_cons 4.356948e-04   p_joint 2.068120e-04

Joint ci ratio: 1.421786e-01	ci left: 1.918373e-04	ci right 2.214585e-04	k: 759	n:3680000
Cons ci ratio: 9.782588e-02	ci left: 4.148018e-04	ci right 4.577297e-04	k: 1604	n:3680000
KS ci ratio: 2.252833e-02	ci left: 8.068390e-03	ci right 8.252494e-03	k: 30029	n:3680000
YBX1   3680000 perm   5983 sec   (615 perm/sec)   p_kst 8.160054e-03   p_cons 4.358696e-04   p_joint 2.062500e-04

Joint ci ratio: 1.420852e-01	ci left: 1.915788e-04	ci right 2.211389e-04	k: 760	n:3690000
Cons ci ratio: 9.773460e-02	ci left: 4.144708e-04	ci right 4.573221e-04	k: 1607	n:3690000
KS ci ratio: 2.249877e-02	ci left: 8.067813e-03	ci right 8.251660e-03	k: 30108	n:3690000
YBX1   3690000 perm   6012 sec   (614 perm/sec)   p_kst 8.159350e-03   p_cons 4.355014e-04   p_joint 2.059621e-04

Joint ci ratio: 1.419920e-01	ci left: 1.913217e-04	ci right 2.208211e-04	k: 761	n:3700000
Cons ci ratio: 9.764357e-02	ci left: 4.141416e-04	ci right 4.569168e-04	k: 1610	n:3700000
KS ci ratio: 2.246482e-02	ci left: 8.070464e-03	ci right 8.254091e-03	k: 30199	n:3700000
YBX1   3700000 perm   6042 sec   (612 perm/sec)   p_kst 8.161892e-03   p_cons 4.351351e-04   p_joint 2.056757e-04

Joint ci ratio: 1.414362e-01	ci left: 1.923659e-04	ci right 2.219005e-04	k: 767	n:3710000
Cons ci ratio: 9.749239e-02	ci left: 4.143402e-04	ci right 4.570658e-04	k: 1615	n:3710000
KS ci ratio: 2.243363e-02	ci left: 8.071225e-03	ci right 8.254611e-03	k: 30283	n:3710000
YBX1   3710000 perm   6071 sec   (611 perm/sec)   p_kst 8.162534e-03   p_cons 4.353100e-04   p_joint 2.067385e-04

Joint ci ratio: 1.411607e-01	ci left: 1.926268e-04	ci right 2.221389e-04	k: 770	n:3720000
Cons ci ratio: 9.734191e-02	ci left: 4.145377e-04	ci right 4.572139e-04	k: 1620	n:3720000
KS ci ratio: 2.239663e-02	ci left: 8.076260e-03	ci right 8.259453e-03	k: 30383	n:3720000
YBX1   3720000 perm   6100 sec   (610 perm/sec)   p_kst 8.167473e-03   p_cons 4.354839e-04   p_joint 2.069892e-04

Joint ci ratio: 1.409780e-01	ci left: 1.926276e-04	ci right 2.220985e-04	k: 772	n:3730000
Cons ci ratio: 9.716223e-02	ci left: 4.149958e-04	ci right 4.576358e-04	k: 1626	n:3730000
KS ci ratio: 2.237017e-02	ci left: 8.073803e-03	ci right 8.256721e-03	k: 30455	n:3730000
YBX1   3730000 perm   6129 sec   (609 perm/sec)   p_kst 8.164879e-03   p_cons 4.359249e-04   p_joint 2.069705e-04

Joint ci ratio: 1.433150e-01	ci left: 1.856657e-04	ci right 2.145826e-04	k: 747	n:3740000
Cons ci ratio: 9.692419e-02	ci left: 4.159733e-04	ci right 4.586031e-04	k: 1634	n:3740000
KS ci ratio: 2.233495e-02	ci left: 8.077740e-03	ci right 8.260456e-03	k: 30551	n:3740000
YBX1   3740000 perm   6158 sec   (607 perm/sec)   p_kst 8.168717e-03   p_cons 4.368984e-04   p_joint 1.997326e-04

Joint ci ratio: 1.432194e-01	ci left: 1.854277e-04	ci right 2.142866e-04	k: 748	n:3750000
Cons ci ratio: 9.674681e-02	ci left: 4.164253e-04	ci right 4.590189e-04	k: 1640	n:3750000
KS ci ratio: 2.230614e-02	ci left: 8.077148e-03	ci right 8.259612e-03	k: 30630	n:3750000
YBX1   3750000 perm   6188 sec   (606 perm/sec)   p_kst 8.168000e-03   p_cons 4.373333e-04   p_joint 1.994667e-04

Joint ci ratio: 1.431239e-01	ci left: 1.851910e-04	ci right 2.139922e-04	k: 749	n:3760000
Cons ci ratio: 9.665852e-02	ci left: 4.160964e-04	ci right 4.586153e-04	k: 1643	n:3760000
KS ci ratio: 2.227342e-02	ci left: 8.079470e-03	ci right 8.261715e-03	k: 30720	n:3760000
YBX1   3760000 perm   6217 sec   (605 perm/sec)   p_kst 8.170213e-03   p_cons 4.369681e-04   p_joint 1.992021e-04

Joint ci ratio: 1.431239e-01	ci left: 1.846998e-04	ci right 2.134246e-04	k: 749	n:3770000
Cons ci ratio: 9.659981e-02	ci left: 4.155104e-04	ci right 4.579421e-04	k: 1645	n:3770000
KS ci ratio: 2.224047e-02	ci left: 8.082042e-03	ci right 8.264072e-03	k: 30811	n:3770000
YBX1   3770000 perm   6247 sec   (603 perm/sec)   p_kst 8.172679e-03   p_cons 4.363395e-04   p_joint 1.986737e-04

Joint ci ratio: 1.427437e-01	ci left: 1.852315e-04	ci right 2.139560e-04	k: 753	n:3780000
Cons ci ratio: 9.648265e-02	ci left: 4.154438e-04	ci right 4.578144e-04	k: 1649	n:3780000
KS ci ratio: 2.221275e-02	ci left: 8.080918e-03	ci right 8.262693e-03	k: 30888	n:3780000
YBX1   3780000 perm   6278 sec   (602 perm/sec)   p_kst 8.171429e-03   p_cons 4.362434e-04   p_joint 1.992063e-04

Joint ci ratio: 1.427438e-01	ci left: 1.847428e-04	ci right 2.133915e-04	k: 753	n:3790000
Cons ci ratio: 9.642426e-02	ci left: 4.148626e-04	ci right 4.571469e-04	k: 1651	n:3790000
KS ci ratio: 2.218766e-02	ci left: 8.077964e-03	ci right 8.259464e-03	k: 30958	n:3790000
YBX1   3790000 perm   6308 sec   (601 perm/sec)   p_kst 8.168338e-03   p_cons 4.356201e-04   p_joint 1.986807e-04

Joint ci ratio: 1.426492e-01	ci left: 1.845104e-04	ci right 2.131024e-04	k: 754	n:3800000
Cons ci ratio: 9.624961e-02	ci left: 4.153118e-04	ci right 4.575608e-04	k: 1657	n:3800000
KS ci ratio: 2.215977e-02	ci left: 8.077118e-03	ci right 8.258369e-03	k: 31036	n:3800000
YBX1   3800000 perm   6338 sec   (600 perm/sec)   p_kst 8.167368e-03   p_cons 4.360526e-04   p_joint 1.984211e-04

Joint ci ratio: 1.423666e-01	ci left: 1.847854e-04	ci right 2.133586e-04	k: 757	n:3810000
Cons ci ratio: 9.613372e-02	ci left: 4.152463e-04	ci right 4.574350e-04	k: 1661	n:3810000
KS ci ratio: 2.212840e-02	ci left: 8.078888e-03	ci right 8.259918e-03	k: 31124	n:3810000
YBX1   3810000 perm   6368 sec   (598 perm/sec)   p_kst 8.169029e-03   p_cons 4.359580e-04   p_joint 1.986877e-04

Joint ci ratio: 1.423667e-01	ci left: 1.843017e-04	ci right 2.128001e-04	k: 757	n:3820000
Cons ci ratio: 9.604709e-02	ci left: 4.149257e-04	ci right 4.570417e-04	k: 1664	n:3820000
KS ci ratio: 2.209824e-02	ci left: 8.079867e-03	ci right 8.260670e-03	k: 31209	n:3820000
YBX1   3820000 perm   6398 sec   (597 perm/sec)   p_kst 8.169895e-03   p_cons 4.356021e-04   p_joint 1.981675e-04

Joint ci ratio: 1.421792e-01	ci left: 1.843241e-04	ci right 2.127852e-04	k: 759	n:3830000
Cons ci ratio: 9.596070e-02	ci left: 4.146069e-04	ci right 4.566505e-04	k: 1667	n:3830000
KS ci ratio: 2.207247e-02	ci left: 8.077726e-03	ci right 8.258267e-03	k: 31282	n:3830000
YBX1   3830000 perm   6427 sec   (596 perm/sec)   p_kst 8.167624e-03   p_cons 4.352480e-04   p_joint 1.981723e-04

Joint ci ratio: 1.418994e-01	ci left: 1.845975e-04	ci right 2.130401e-04	k: 762	n:3840000
Cons ci ratio: 9.587454e-02	ci left: 4.142897e-04	ci right 4.562613e-04	k: 1670	n:3840000
KS ci ratio: 2.204785e-02	ci left: 8.074819e-03	ci right 8.255091e-03	k: 31352	n:3840000
YBX1   3840000 perm   6457 sec   (595 perm/sec)   p_kst 8.164583e-03   p_cons 4.348958e-04   p_joint 1.984375e-04

Joint ci ratio: 1.418994e-01	ci left: 1.841181e-04	ci right 2.124867e-04	k: 762	n:3850000
Cons ci ratio: 9.584590e-02	ci left: 4.134671e-04	ci right 4.553422e-04	k: 1671	n:3850000
KS ci ratio: 2.201731e-02	ci left: 8.076318e-03	ci right 8.256371e-03	k: 31439	n:3850000
YBX1   3850000 perm   6489 sec   (593 perm/sec)   p_kst 8.165974e-03   p_cons 4.340260e-04   p_joint 1.979221e-04

Joint ci ratio: 1.417138e-01	ci left: 1.841408e-04	ci right 2.124727e-04	k: 764	n:3860000
Cons ci ratio: 9.576005e-02	ci left: 4.131545e-04	ci right 4.549583e-04	k: 1674	n:3860000
KS ci ratio: 2.198759e-02	ci left: 8.077295e-03	ci right 8.257123e-03	k: 31524	n:3860000
YBX1   3860000 perm   6519 sec   (592 perm/sec)   p_kst 8.166839e-03   p_cons 4.336788e-04   p_joint 1.979275e-04

Joint ci ratio: 1.415290e-01	ci left: 1.841635e-04	ci right 2.124588e-04	k: 766	n:3870000
Cons ci ratio: 9.570296e-02	ci left: 4.125914e-04	ci right 4.543119e-04	k: 1676	n:3870000
KS ci ratio: 2.195765e-02	ci left: 8.078523e-03	ci right 8.258131e-03	k: 31610	n:3870000
YBX1   3870000 perm   6550 sec   (591 perm/sec)   p_kst 8.167959e-03   p_cons 4.330749e-04   p_joint 1.979328e-04

Joint ci ratio: 1.412530e-01	ci left: 1.844347e-04	ci right 2.127118e-04	k: 769	n:3880000
Cons ci ratio: 9.564597e-02	ci left: 4.120311e-04	ci right 4.536688e-04	k: 1678	n:3880000
KS ci ratio: 2.193167e-02	ci left: 8.076926e-03	ci right 8.256283e-03	k: 31685	n:3880000
YBX1   3880000 perm   6580 sec   (590 perm/sec)   p_kst 8.166237e-03   p_cons 4.324742e-04   p_joint 1.981959e-04

Joint ci ratio: 1.412530e-01	ci left: 1.839606e-04	ci right 2.121650e-04	k: 769	n:3890000
Cons ci ratio: 9.564602e-02	ci left: 4.109719e-04	ci right 4.525026e-04	k: 1678	n:3890000
KS ci ratio: 2.190995e-02	ci left: 8.072269e-03	ci right 8.251343e-03	k: 31748	n:3890000
YBX1   3890000 perm   6610 sec   (588 perm/sec)   p_kst 8.161440e-03   p_cons 4.313625e-04   p_joint 1.976864e-04

Joint ci ratio: 1.409786e-01	ci left: 1.842310e-04	ci right 2.124173e-04	k: 772	n:3900000
Cons ci ratio: 9.556070e-02	ci left: 4.106689e-04	ci right 4.521299e-04	k: 1681	n:3900000
KS ci ratio: 2.188379e-02	ci left: 8.070951e-03	ci right 8.249780e-03	k: 31824	n:3900000
YBX1   3900000 perm   6641 sec   (587 perm/sec)   p_kst 8.160000e-03   p_cons 4.310256e-04   p_joint 1.979487e-04

Joint ci ratio: 1.408875e-01	ci left: 1.840065e-04	ci right 2.121388e-04	k: 773	n:3910000
Cons ci ratio: 9.547561e-02	ci left: 4.103676e-04	ci right 4.517592e-04	k: 1684	n:3910000
KS ci ratio: 2.185323e-02	ci left: 8.072947e-03	ci right 8.251567e-03	k: 31913	n:3910000
YBX1   3910000 perm   6672 sec   (586 perm/sec)   p_kst 8.161893e-03   p_cons 4.306905e-04   p_joint 1.976982e-04

Joint ci ratio: 1.407966e-01	ci left: 1.837832e-04	ci right 2.118617e-04	k: 774	n:3920000
Cons ci ratio: 9.530606e-02	ci left: 4.108148e-04	ci right 4.521738e-04	k: 1690	n:3920000
KS ci ratio: 2.181731e-02	ci left: 8.078993e-03	ci right 8.257449e-03	k: 32018	n:3920000
YBX1   3920000 perm   6703 sec   (585 perm/sec)   p_kst 8.167857e-03   p_cons 4.311224e-04   p_joint 1.974490e-04

Joint ci ratio: 1.406153e-01	ci left: 1.838066e-04	ci right 2.118495e-04	k: 776	n:3930000
Cons ci ratio: 9.510937e-02	ci left: 4.115083e-04	ci right 4.528468e-04	k: 1697	n:3930000
KS ci ratio: 2.178395e-02	ci left: 8.083236e-03	ci right 8.261510e-03	k: 32116	n:3930000
YBX1   3930000 perm   6735 sec   (584 perm/sec)   p_kst 8.172010e-03   p_cons 4.318066e-04   p_joint 1.974555e-04

Joint ci ratio: 1.399861e-01	ci left: 1.850543e-04	ci right 2.131507e-04	k: 783	n:3940000
Cons ci ratio: 9.494176e-02	ci left: 4.119505e-04	ci right 4.532565e-04	k: 1703	n:3940000
KS ci ratio: 2.175075e-02	ci left: 8.087458e-03	ci right 8.265550e-03	k: 32214	n:3940000
YBX1   3940000 perm   6766 sec   (582 perm/sec)   p_kst 8.176142e-03   p_cons 4.322335e-04   p_joint 1.987310e-04

Joint ci ratio: 1.395417e-01	ci left: 1.858074e-04	ci right 2.139212e-04	k: 788	n:3950000
Cons ci ratio: 9.483053e-02	ci left: 4.118962e-04	ci right 4.531457e-04	k: 1707	n:3950000
KS ci ratio: 2.172515e-02	ci left: 8.086120e-03	ci right 8.263969e-03	k: 32290	n:3950000
YBX1   3950000 perm   6798 sec   (581 perm/sec)   p_kst 8.174684e-03   p_cons 4.321519e-04   p_joint 1.994937e-04

Joint ci ratio: 1.394534e-01	ci left: 1.855819e-04	ci right 2.136423e-04	k: 789	n:3960000
Cons ci ratio: 9.463677e-02	ci left: 4.125819e-04	ci right 4.538109e-04	k: 1714	n:3960000
KS ci ratio: 2.169593e-02	ci left: 8.087551e-03	ci right 8.265190e-03	k: 32377	n:3960000
YBX1   3960000 perm   6829 sec   (580 perm/sec)   p_kst 8.176010e-03   p_cons 4.328283e-04   p_joint 1.992424e-04

Joint ci ratio: 1.391017e-01	ci left: 1.860869e-04	ci right 2.141468e-04	k: 793	n:3970000
Cons ci ratio: 9.449910e-02	ci left: 4.127723e-04	ci right 4.539570e-04	k: 1719	n:3970000
KS ci ratio: 2.166817e-02	ci left: 8.087973e-03	ci right 8.265391e-03	k: 32460	n:3970000
YBX1   3970000 perm   6861 sec   (579 perm/sec)   p_kst 8.176322e-03   p_cons 4.329975e-04   p_joint 1.997481e-04

Joint ci ratio: 1.391017e-01	ci left: 1.856194e-04	ci right 2.136087e-04	k: 793	n:3980000
Cons ci ratio: 9.436204e-02	ci left: 4.129618e-04	ci right 4.541024e-04	k: 1724	n:3980000
KS ci ratio: 2.163817e-02	ci left: 8.090142e-03	ci right 8.267359e-03	k: 32550	n:3980000
YBX1   3980000 perm   6893 sec   (577 perm/sec)   p_kst 8.178392e-03   p_cons 4.331658e-04   p_joint 1.992462e-04

Joint ci ratio: 1.389268e-01	ci left: 1.856380e-04	ci right 2.135920e-04	k: 795	n:3990000
Cons ci ratio: 9.433474e-02	ci left: 4.121715e-04	ci right 4.532208e-04	k: 1725	n:3990000
KS ci ratio: 2.161230e-02	ci left: 8.089309e-03	ci right 8.266293e-03	k: 32628	n:3990000
YBX1   3990000 perm   6924 sec   (576 perm/sec)   p_kst 8.177444e-03   p_cons 4.323308e-04   p_joint 1.992481e-04

Joint ci ratio: 1.388397e-01	ci left: 1.854152e-04	ci right 2.133167e-04	k: 796	n:4000000
Cons ci ratio: 9.428016e-02	ci left: 4.116293e-04	ci right 4.525996e-04	k: 1727	n:4000000
KS ci ratio: 2.158453e-02	ci left: 8.089972e-03	ci right 8.266741e-03	k: 32712	n:4000000
YBX1   4000000 perm   6956 sec   (575 perm/sec)   p_kst 8.178000e-03   p_cons 4.317500e-04   p_joint 1.990000e-04

Joint ci ratio: 1.386658e-01	ci left: 1.854342e-04	ci right 2.133008e-04	k: 798	n:4010000
Cons ci ratio: 9.419844e-02	ci left: 4.113332e-04	ci right 4.522367e-04	k: 1730	n:4010000
KS ci ratio: 2.155654e-02	ci left: 8.090880e-03	ci right 8.267437e-03	k: 32797	n:4010000
YBX1   4010000 perm   6988 sec   (574 perm/sec)   p_kst 8.178803e-03   p_cons 4.314214e-04   p_joint 1.990025e-04

Joint ci ratio: 1.384926e-01	ci left: 1.854532e-04	ci right 2.132850e-04	k: 800	n:4020000
Cons ci ratio: 9.414410e-02	ci left: 4.107958e-04	ci right 4.516209e-04	k: 1732	n:4020000
KS ci ratio: 2.152436e-02	ci left: 8.095001e-03	ci right 8.271380e-03	k: 32895	n:4020000
YBX1   4020000 perm   7020 sec   (573 perm/sec)   p_kst 8.182836e-03   p_cons 4.308458e-04   p_joint 1.990050e-04

Joint ci ratio: 1.380623e-01	ci left: 1.861908e-04	ci right 2.140393e-04	k: 805	n:4030000
Cons ci ratio: 9.398153e-02	ci left: 4.112303e-04	ci right 4.520241e-04	k: 1738	n:4030000
KS ci ratio: 2.149331e-02	ci left: 8.098361e-03	ci right 8.274556e-03	k: 32990	n:4030000
YBX1   4030000 perm   7052 sec   (571 perm/sec)   p_kst 8.186104e-03   p_cons 4.312655e-04   p_joint 1.997519e-04

Joint ci ratio: 1.378913e-01	ci left: 1.862079e-04	ci right 2.140217e-04	k: 807	n:4040000
Cons ci ratio: 9.384670e-02	ci left: 4.114209e-04	ci right 4.521719e-04	k: 1743	n:4040000
KS ci ratio: 2.146599e-02	ci left: 8.098996e-03	ci right 8.274978e-03	k: 33074	n:4040000
YBX1   4040000 perm   7085 sec   (570 perm/sec)   p_kst 8.186634e-03   p_cons 4.314356e-04   p_joint 1.997525e-04

Joint ci ratio: 1.378061e-01	ci left: 1.859865e-04	ci right 2.137486e-04	k: 808	n:4050000
Cons ci ratio: 9.368566e-02	ci left: 4.118518e-04	ci right 4.525717e-04	k: 1749	n:4050000
KS ci ratio: 2.144498e-02	ci left: 8.094961e-03	ci right 8.270681e-03	k: 33139	n:4050000
YBX1   4050000 perm   7117 sec   (569 perm/sec)   p_kst 8.182469e-03   p_cons 4.318519e-04   p_joint 1.995062e-04

Joint ci ratio: 1.373821e-01	ci left: 1.867176e-04	ci right 2.144960e-04	k: 813	n:4060000
Cons ci ratio: 9.360548e-02	ci left: 4.115590e-04	ci right 4.522132e-04	k: 1752	n:4060000
KS ci ratio: 2.141915e-02	ci left: 8.094622e-03	ci right 8.270120e-03	k: 33219	n:4060000
YBX1   4060000 perm   7148 sec   (568 perm/sec)   p_kst 8.182020e-03   p_cons 4.315271e-04   p_joint 2.002463e-04

Joint ci ratio: 1.372137e-01	ci left: 1.867333e-04	ci right 2.144773e-04	k: 815	n:4070000
Cons ci ratio: 9.347226e-02	ci left: 4.117476e-04	ci right 4.523593e-04	k: 1757	n:4070000
KS ci ratio: 2.139308e-02	ci left: 8.094528e-03	ci right 8.269809e-03	k: 33300	n:4070000
YBX1   4070000 perm   7180 sec   (567 perm/sec)   p_kst 8.181818e-03   p_cons 4.316953e-04   p_joint 2.002457e-04

Joint ci ratio: 1.371297e-01	ci left: 1.865123e-04	ci right 2.142051e-04	k: 816	n:4080000
Cons ci ratio: 9.336611e-02	ci left: 4.116959e-04	ci right 4.522539e-04	k: 1761	n:4080000
KS ci ratio: 2.136711e-02	ci left: 8.094436e-03	ci right 8.269499e-03	k: 33381	n:4080000
YBX1   4080000 perm   7211 sec   (566 perm/sec)   p_kst 8.181618e-03   p_cons 4.316176e-04   p_joint 2.000000e-04

Joint ci ratio: 1.367952e-01	ci left: 1.870008e-04	ci right 2.146929e-04	k: 820	n:4090000
Cons ci ratio: 9.320753e-02	ci left: 4.121221e-04	ci right 4.526493e-04	k: 1767	n:4090000
KS ci ratio: 2.134156e-02	ci left: 8.094100e-03	ci right 8.268944e-03	k: 33461	n:4090000
YBX1   4090000 perm   7244 sec   (565 perm/sec)   p_kst 8.181174e-03   p_cons 4.320293e-04   p_joint 2.004890e-04

Joint ci ratio: 1.367952e-01	ci left: 1.865447e-04	ci right 2.141692e-04	k: 820	n:4100000
Cons ci ratio: 9.304975e-02	ci left: 4.125462e-04	ci right 4.530428e-04	k: 1773	n:4100000
KS ci ratio: 2.131578e-02	ci left: 8.094009e-03	ci right 8.268637e-03	k: 33542	n:4100000
YBX1   4100000 perm   7276 sec   (564 perm/sec)   p_kst 8.180976e-03   p_cons 4.324390e-04   p_joint 2.000000e-04

Joint ci ratio: 1.366289e-01	ci left: 1.865608e-04	ci right 2.141514e-04	k: 822	n:4110000
Cons ci ratio: 9.294503e-02	ci left: 4.124931e-04	ci right 4.529363e-04	k: 1777	n:4110000
KS ci ratio: 2.128403e-02	ci left: 8.098518e-03	ci right 8.272979e-03	k: 33642	n:4110000
YBX1   4110000 perm   7308 sec   (562 perm/sec)   p_kst 8.185401e-03   p_cons 4.323601e-04   p_joint 2.000000e-04

Joint ci ratio: 1.364632e-01	ci left: 1.865768e-04	ci right 2.141336e-04	k: 824	n:4120000
Cons ci ratio: 9.281461e-02	ci left: 4.126773e-04	ci right 4.530788e-04	k: 1782	n:4120000
KS ci ratio: 2.125623e-02	ci left: 8.100107e-03	ci right 8.274372e-03	k: 33730	n:4120000
YBX1   4120000 perm   7341 sec   (561 perm/sec)   p_kst 8.186893e-03   p_cons 4.325243e-04   p_joint 2.000000e-04

Joint ci ratio: 1.363806e-01	ci left: 1.863589e-04	ci right 2.138655e-04	k: 825	n:4130000
Cons ci ratio: 9.268474e-02	ci left: 4.128606e-04	ci right 4.532204e-04	k: 1787	n:4130000
KS ci ratio: 2.123171e-02	ci left: 8.099280e-03	ci right 8.273324e-03	k: 33808	n:4130000
YBX1   4130000 perm   7373 sec   (560 perm/sec)   p_kst 8.185956e-03   p_cons 4.326877e-04   p_joint 1.997579e-04

Joint ci ratio: 1.362981e-01	ci left: 1.861421e-04	ci right 2.135987e-04	k: 826	n:4140000
Cons ci ratio: 9.252960e-02	ci left: 4.132791e-04	ci right 4.536085e-04	k: 1793	n:4140000
KS ci ratio: 2.120916e-02	ci left: 8.097015e-03	ci right 8.270824e-03	k: 33880	n:4140000
YBX1   4140000 perm   7405 sec   (559 perm/sec)   p_kst 8.183575e-03   p_cons 4.330918e-04   p_joint 1.995169e-04

Joint ci ratio: 1.362982e-01	ci left: 1.856936e-04	ci right 2.130840e-04	k: 826	n:4150000
Cons ci ratio: 9.240092e-02	ci left: 4.134602e-04	ci right 4.537482e-04	k: 1798	n:4150000
KS ci ratio: 2.118354e-02	ci left: 8.097159e-03	ci right 8.270758e-03	k: 33962	n:4150000
YBX1   4150000 perm   7437 sec   (558 perm/sec)   p_kst 8.183614e-03   p_cons 4.332530e-04   p_joint 1.990361e-04

Joint ci ratio: 1.361336e-01	ci left: 1.857116e-04	ci right 2.130690e-04	k: 828	n:4160000
Cons ci ratio: 9.234962e-02	ci left: 4.129360e-04	ci right 4.531493e-04	k: 1800	n:4160000
KS ci ratio: 2.115927e-02	ci left: 8.096345e-03	ci right 8.269725e-03	k: 34040	n:4160000
YBX1   4160000 perm   7470 sec   (557 perm/sec)   p_kst 8.182692e-03   p_cons 4.326923e-04   p_joint 1.990385e-04

Joint ci ratio: 1.361337e-01	ci left: 1.852662e-04	ci right 2.125580e-04	k: 828	n:4170000
Cons ci ratio: 9.227282e-02	ci left: 4.126485e-04	ci right 4.527986e-04	k: 1803	n:4170000
KS ci ratio: 2.113320e-02	ci left: 8.096967e-03	ci right 8.270144e-03	k: 34124	n:4170000
YBX1   4170000 perm   7504 sec   (556 perm/sec)   p_kst 8.183213e-03   p_cons 4.323741e-04   p_joint 1.985612e-04

Joint ci ratio: 1.358064e-01	ci left: 1.857474e-04	ci right 2.130390e-04	k: 832	n:4180000
Cons ci ratio: 9.224729e-02	ci left: 4.118951e-04	ci right 4.519602e-04	k: 1804	n:4180000
KS ci ratio: 2.110755e-02	ci left: 8.097348e-03	ci right 8.270320e-03	k: 34207	n:4180000
YBX1   4180000 perm   7537 sec   (555 perm/sec)   p_kst 8.183493e-03   p_cons 4.315789e-04   p_joint 1.990431e-04

Joint ci ratio: 1.355625e-01	ci left: 1.859958e-04	ci right 2.132708e-04	k: 835	n:4190000
Cons ci ratio: 9.214525e-02	ci left: 4.118447e-04	ci right 4.518582e-04	k: 1808	n:4190000
KS ci ratio: 2.108353e-02	ci left: 8.096540e-03	ci right 8.269296e-03	k: 34285	n:4190000
YBX1   4190000 perm   7570 sec   (553 perm/sec)   p_kst 8.182578e-03   p_cons 4.315036e-04   p_joint 1.992840e-04

Joint ci ratio: 1.354815e-01	ci left: 1.857829e-04	ci right 2.130092e-04	k: 836	n:4200000
Cons ci ratio: 9.204355e-02	ci left: 4.117945e-04	ci right 4.517566e-04	k: 1812	n:4200000
KS ci ratio: 2.106146e-02	ci left: 8.094315e-03	ci right 8.266841e-03	k: 34357	n:4200000
YBX1   4200000 perm   7604 sec   (552 perm/sec)   p_kst 8.180238e-03   p_cons 4.314286e-04   p_joint 1.990476e-04

Joint ci ratio: 1.350786e-01	ci left: 1.864891e-04	ci right 2.137310e-04	k: 841	n:4210000
Cons ci ratio: 9.199285e-02	ci left: 4.112805e-04	ci right 4.511695e-04	k: 1814	n:4210000
KS ci ratio: 2.103298e-02	ci left: 8.097062e-03	ci right 8.269411e-03	k: 34450	n:4210000
YBX1   4210000 perm   7637 sec   (551 perm/sec)   p_kst 8.182898e-03   p_cons 4.308789e-04   p_joint 1.997625e-04

Joint ci ratio: 1.346793e-01	ci left: 1.871921e-04	ci right 2.144493e-04	k: 846	n:4220000
Cons ci ratio: 9.186639e-02	ci left: 4.114635e-04	ci right 4.513125e-04	k: 1819	n:4220000
KS ci ratio: 2.100830e-02	ci left: 8.096968e-03	ci right 8.269110e-03	k: 34531	n:4220000
YBX1   4220000 perm   7671 sec   (550 perm/sec)   p_kst 8.182701e-03   p_cons 4.310427e-04   p_joint 2.004739e-04

Joint ci ratio: 1.345998e-01	ci left: 1.869780e-04	ci right 2.141867e-04	k: 847	n:4230000
Cons ci ratio: 9.176561e-02	ci left: 4.114147e-04	ci right 4.512129e-04	k: 1823	n:4230000
KS ci ratio: 2.097943e-02	ci left: 8.100168e-03	ci right 8.272138e-03	k: 34626	n:4230000
YBX1   4230000 perm   7705 sec   (549 perm/sec)   p_kst 8.185816e-03   p_cons 4.309693e-04   p_joint 2.002364e-04

Joint ci ratio: 1.344414e-01	ci left: 1.869928e-04	ci right 2.141691e-04	k: 849	n:4240000
Cons ci ratio: 9.174050e-02	ci left: 4.106748e-04	ci right 4.503900e-04	k: 1824	n:4240000
KS ci ratio: 2.095555e-02	ci left: 8.099598e-03	ci right 8.271358e-03	k: 34705	n:4240000
YBX1   4240000 perm   7739 sec   (548 perm/sec)   p_kst 8.185142e-03   p_cons 4.301887e-04   p_joint 2.002358e-04

Joint ci ratio: 1.342048e-01	ci left: 1.872350e-04	ci right 2.143948e-04	k: 852	n:4250000
Cons ci ratio: 9.171541e-02	ci left: 4.099384e-04	ci right 4.495709e-04	k: 1825	n:4250000
KS ci ratio: 2.092962e-02	ci left: 8.100669e-03	ci right 8.272237e-03	k: 34791	n:4250000
YBX1   4250000 perm   7772 sec   (547 perm/sec)   p_kst 8.186118e-03   p_cons 4.294118e-04   p_joint 2.004706e-04

Joint ci ratio: 1.339694e-01	ci left: 1.874761e-04	ci right 2.146194e-04	k: 855	n:4260000
Cons ci ratio: 9.164018e-02	ci left: 4.096642e-04	ci right 4.492360e-04	k: 1828	n:4260000
KS ci ratio: 2.090107e-02	ci left: 8.103838e-03	ci right 8.275236e-03	k: 34886	n:4260000
YBX1   4260000 perm   7807 sec   (546 perm/sec)   p_kst 8.189202e-03   p_cons 4.291080e-04   p_joint 2.007042e-04

Joint ci ratio: 1.338131e-01	ci left: 1.874897e-04	ci right 2.146008e-04	k: 857	n:4270000
Cons ci ratio: 9.156513e-02	ci left: 4.093913e-04	ci right 4.489026e-04	k: 1831	n:4270000
KS ci ratio: 2.087715e-02	ci left: 8.103497e-03	ci right 8.274689e-03	k: 34966	n:4270000
YBX1   4270000 perm   7841 sec   (545 perm/sec)   p_kst 8.188759e-03   p_cons 4.288056e-04   p_joint 2.007026e-04

Joint ci ratio: 1.337352e-01	ci left: 1.872775e-04	ci right 2.143409e-04	k: 858	n:4280000
Cons ci ratio: 9.154018e-02	ci left: 4.086630e-04	ci right 4.480927e-04	k: 1832	n:4280000
KS ci ratio: 2.085332e-02	ci left: 8.103157e-03	ci right 8.274145e-03	k: 35046	n:4280000
YBX1   4280000 perm   7875 sec   (543 perm/sec)   p_kst 8.188318e-03   p_cons 4.280374e-04   p_joint 2.004673e-04

Joint ci ratio: 1.336575e-01	ci left: 1.870662e-04	ci right 2.140821e-04	k: 859	n:4290000
Cons ci ratio: 9.144047e-02	ci left: 4.086215e-04	ci right 4.480020e-04	k: 1836	n:4290000
KS ci ratio: 2.082717e-02	ci left: 8.104675e-03	ci right 8.275477e-03	k: 35134	n:4290000
YBX1   4290000 perm   7909 sec   (542 perm/sec)   p_kst 8.189744e-03   p_cons 4.279720e-04   p_joint 2.002331e-04

Joint ci ratio: 1.336575e-01	ci left: 1.866312e-04	ci right 2.135843e-04	k: 859	n:4300000
Cons ci ratio: 9.141562e-02	ci left: 4.078985e-04	ci right 4.471980e-04	k: 1837	n:4300000
KS ci ratio: 2.080023e-02	ci left: 8.106880e-03	ci right 8.277505e-03	k: 35225	n:4300000
YBX1   4300000 perm   7943 sec   (541 perm/sec)   p_kst 8.191860e-03   p_cons 4.272093e-04   p_joint 1.997674e-04

Joint ci ratio: 1.335799e-01	ci left: 1.864224e-04	ci right 2.133285e-04	k: 860	n:4310000
Cons ci ratio: 9.119258e-02	ci left: 4.089925e-04	ci right 4.482962e-04	k: 1846	n:4310000
KS ci ratio: 2.077606e-02	ci left: 8.106997e-03	ci right 8.277424e-03	k: 35307	n:4310000
YBX1   4310000 perm   7977 sec   (540 perm/sec)   p_kst 8.191879e-03   p_cons 4.283063e-04   p_joint 1.995360e-04

Joint ci ratio: 1.334250e-01	ci left: 1.864384e-04	ci right 2.133131e-04	k: 862	n:4320000
Cons ci ratio: 9.109399e-02	ci left: 4.089506e-04	ci right 4.482055e-04	k: 1850	n:4320000
KS ci ratio: 2.074873e-02	ci left: 8.109647e-03	ci right 8.279902e-03	k: 35400	n:4320000
YBX1   4320000 perm   8012 sec   (539 perm/sec)   p_kst 8.194444e-03   p_cons 4.282407e-04   p_joint 1.995370e-04

Joint ci ratio: 1.332707e-01	ci left: 1.864543e-04	ci right 2.132977e-04	k: 864	n:4330000
Cons ci ratio: 9.104484e-02	ci left: 4.084575e-04	ci right 4.476428e-04	k: 1852	n:4330000
KS ci ratio: 2.071709e-02	ci left: 8.115731e-03	ci right 8.285852e-03	k: 35508	n:4330000
YBX1   4330000 perm   8046 sec   (538 perm/sec)   p_kst 8.200462e-03   p_cons 4.277136e-04   p_joint 1.995381e-04

Joint ci ratio: 1.331169e-01	ci left: 1.864702e-04	ci right 2.132824e-04	k: 866	n:4340000
Cons ci ratio: 9.097125e-02	ci left: 4.081919e-04	ci right 4.473183e-04	k: 1855	n:4340000
KS ci ratio: 2.069438e-02	ci left: 8.114910e-03	ci right 8.284825e-03	k: 35586	n:4340000
YBX1   4340000 perm   8082 sec   (537 perm/sec)   p_kst 8.199539e-03   p_cons 4.274194e-04   p_joint 1.995392e-04

Joint ci ratio: 1.330402e-01	ci left: 1.862637e-04	ci right 2.130297e-04	k: 867	n:4350000
Cons ci ratio: 9.087338e-02	ci left: 4.081522e-04	ci right 4.472305e-04	k: 1859	n:4350000
KS ci ratio: 2.067029e-02	ci left: 8.115237e-03	ci right 8.284959e-03	k: 35669	n:4350000
YBX1   4350000 perm   8116 sec   (536 perm/sec)   p_kst 8.199770e-03   p_cons 4.273563e-04   p_joint 1.993103e-04

Joint ci ratio: 1.329636e-01	ci left: 1.860582e-04	ci right 2.127780e-04	k: 868	n:4360000
Cons ci ratio: 9.070283e-02	ci left: 4.087851e-04	ci right 4.478467e-04	k: 1866	n:4360000
KS ci ratio: 2.064803e-02	ci left: 8.114194e-03	ci right 8.283708e-03	k: 35746	n:4360000
YBX1   4360000 perm   8151 sec   (535 perm/sec)   p_kst 8.198624e-03   p_cons 4.279817e-04   p_joint 1.990826e-04

Joint ci ratio: 1.328872e-01	ci left: 1.858537e-04	ci right 2.125276e-04	k: 869	n:4370000
Cons ci ratio: 9.063006e-02	ci left: 4.085206e-04	ci right 4.475239e-04	k: 1869	n:4370000
KS ci ratio: 2.062409e-02	ci left: 8.114521e-03	ci right 8.283844e-03	k: 35829	n:4370000
YBX1   4370000 perm   8186 sec   (534 perm/sec)   p_kst 8.198856e-03   p_cons 4.276888e-04   p_joint 1.988558e-04

Joint ci ratio: 1.326587e-01	ci left: 1.860916e-04	ci right 2.127500e-04	k: 872	n:4380000
Cons ci ratio: 9.050913e-02	ci left: 4.087036e-04	ci right 4.476696e-04	k: 1874	n:4380000
KS ci ratio: 2.059851e-02	ci left: 8.116209e-03	ci right 8.285355e-03	k: 35918	n:4380000
YBX1   4380000 perm   8221 sec   (533 perm/sec)   p_kst 8.200457e-03   p_cons 4.278539e-04   p_joint 1.990868e-04

Joint ci ratio: 1.332709e-01	ci left: 1.839059e-04	ci right 2.103825e-04	k: 864	n:4390000
Cons ci ratio: 9.034063e-02	ci left: 4.093311e-04	ci right 4.482804e-04	k: 1881	n:4390000
KS ci ratio: 2.057389e-02	ci left: 8.117211e-03	ci right 8.286172e-03	k: 36004	n:4390000
YBX1   4390000 perm   8256 sec   (532 perm/sec)   p_kst 8.201367e-03   p_cons 4.284738e-04   p_joint 1.968109e-04

Joint ci ratio: 1.331939e-01	ci left: 1.837077e-04	ci right 2.101392e-04	k: 865	n:4400000
Cons ci ratio: 9.029269e-02	ci left: 4.088451e-04	ci right 4.477264e-04	k: 1883	n:4400000
KS ci ratio: 2.055078e-02	ci left: 8.117077e-03	ci right 8.285844e-03	k: 36085	n:4400000
YBX1   4400000 perm   8291 sec   (531 perm/sec)   p_kst 8.201136e-03   p_cons 4.279545e-04   p_joint 1.965909e-04

Joint ci ratio: 1.329638e-01	ci left: 1.839487e-04	ci right 2.103656e-04	k: 868	n:4410000
Cons ci ratio: 9.019699e-02	ci left: 4.088045e-04	ci right 4.476386e-04	k: 1887	n:4410000
KS ci ratio: 2.053005e-02	ci left: 8.115139e-03	ci right 8.283694e-03	k: 36158	n:4410000
YBX1   4410000 perm   8326 sec   (530 perm/sec)   p_kst 8.199093e-03   p_cons 4.278912e-04   p_joint 1.968254e-04

Joint ci ratio: 1.326588e-01	ci left: 1.844075e-04	ci right 2.108247e-04	k: 872	n:4420000
Cons ci ratio: 9.010160e-02	ci left: 4.087642e-04	ci right 4.475512e-04	k: 1891	n:4420000
KS ci ratio: 2.050282e-02	ci left: 8.118387e-03	ci right 8.286783e-03	k: 36254	n:4420000
YBX1   4420000 perm   8361 sec   (529 perm/sec)   p_kst 8.202262e-03   p_cons 4.278281e-04   p_joint 1.972851e-04

Joint ci ratio: 1.326588e-01	ci left: 1.839912e-04	ci right 2.103488e-04	k: 872	n:4430000
Cons ci ratio: 8.993535e-02	ci left: 4.093861e-04	ci right 4.481566e-04	k: 1898	n:4430000
KS ci ratio: 2.047740e-02	ci left: 8.120273e-03	ci right 8.288497e-03	k: 36344	n:4430000
YBX1   4430000 perm   8396 sec   (528 perm/sec)   p_kst 8.204063e-03   p_cons 4.284424e-04   p_joint 1.968397e-04

Joint ci ratio: 1.323559e-01	ci left: 1.844478e-04	ci right 2.108058e-04	k: 876	n:4440000
Cons ci ratio: 8.979359e-02	ci left: 4.097850e-04	ci right 4.485290e-04	k: 1904	n:4440000
KS ci ratio: 2.045377e-02	ci left: 8.120807e-03	ci right 8.288845e-03	k: 36428	n:4440000
YBX1   4440000 perm   8431 sec   (527 perm/sec)   p_kst 8.204505e-03   p_cons 4.288288e-04   p_joint 1.972973e-04

Joint ci ratio: 1.330405e-01	ci left: 1.820780e-04	ci right 2.082425e-04	k: 867	n:4450000
Cons ci ratio: 8.967598e-02	ci left: 4.099625e-04	ci right 4.486699e-04	k: 1909	n:4450000
KS ci ratio: 2.042966e-02	ci left: 8.121785e-03	ci right 8.289643e-03	k: 36514	n:4450000
YBX1   4450000 perm   8467 sec   (526 perm/sec)   p_kst 8.205393e-03   p_cons 4.289888e-04   p_joint 1.948315e-04

Joint ci ratio: 1.329639e-01	ci left: 1.818865e-04	ci right 2.080073e-04	k: 868	n:4460000
Cons ci ratio: 8.955882e-02	ci left: 4.101393e-04	ci right 4.488101e-04	k: 1914	n:4460000
KS ci ratio: 2.040929e-02	ci left: 8.119858e-03	ci right 8.287507e-03	k: 36587	n:4460000
YBX1   4460000 perm   8503 sec   (525 perm/sec)   p_kst 8.203363e-03   p_cons 4.291480e-04   p_joint 1.946188e-04

Joint ci ratio: 1.328112e-01	ci left: 1.819122e-04	ci right 2.080042e-04	k: 870	n:4470000
Cons ci ratio: 8.944213e-02	ci left: 4.103153e-04	ci right 4.489496e-04	k: 1919	n:4470000
KS ci ratio: 2.039179e-02	ci left: 8.115715e-03	ci right 8.283133e-03	k: 36650	n:4470000
YBX1   4470000 perm   8538 sec   (524 perm/sec)   p_kst 8.199105e-03   p_cons 4.293065e-04   p_joint 1.946309e-04

Joint ci ratio: 1.325830e-01	ci left: 1.821535e-04	ci right 2.082318e-04	k: 873	n:4480000
Cons ci ratio: 8.930268e-02	ci left: 4.107088e-04	ci right 4.493167e-04	k: 1925	n:4480000
KS ci ratio: 2.036790e-02	ci left: 8.116698e-03	ci right 8.283938e-03	k: 36736	n:4480000
YBX1   4480000 perm   8573 sec   (523 perm/sec)   p_kst 8.200000e-03   p_cons 4.296875e-04   p_joint 1.948661e-04

Joint ci ratio: 1.325073e-01	ci left: 1.819632e-04	ci right 2.079981e-04	k: 874	n:4490000
Cons ci ratio: 8.925637e-02	ci left: 4.102295e-04	ci right 4.487714e-04	k: 1927	n:4490000
KS ci ratio: 2.034660e-02	ci left: 8.115683e-03	ci right 8.282725e-03	k: 36813	n:4490000
YBX1   4490000 perm   8609 sec   (522 perm/sec)   p_kst 8.198886e-03   p_cons 4.291759e-04   p_joint 1.946548e-04

Joint ci ratio: 1.323561e-01	ci left: 1.819885e-04	ci right 2.079951e-04	k: 876	n:4500000
Cons ci ratio: 8.911780e-02	ci left: 4.106215e-04	ci right 4.491372e-04	k: 1933	n:4500000
KS ci ratio: 2.031870e-02	ci left: 8.119979e-03	ci right 8.286877e-03	k: 36914	n:4500000
YBX1   4500000 perm   8646 sec   (521 perm/sec)   p_kst 8.203111e-03   p_cons 4.295556e-04   p_joint 1.946667e-04

Joint ci ratio: 1.322054e-01	ci left: 1.820138e-04	ci right 2.079920e-04	k: 878	n:4510000
Cons ci ratio: 8.907178e-02	ci left: 4.101446e-04	ci right 4.485946e-04	k: 1935	n:4510000
KS ci ratio: 2.029617e-02	ci left: 8.120064e-03	ci right 8.286777e-03	k: 36996	n:4510000
YBX1   4510000 perm   8682 sec   (519 perm/sec)   p_kst 8.203104e-03   p_cons 4.290466e-04   p_joint 1.946785e-04

Joint ci ratio: 1.321303e-01	ci left: 1.818250e-04	ci right 2.077604e-04	k: 879	n:4520000
Cons ci ratio: 8.897990e-02	ci left: 4.101025e-04	ci right 4.485068e-04	k: 1939	n:4520000
KS ci ratio: 2.027206e-02	ci left: 8.121469e-03	ci right 8.288011e-03	k: 37084	n:4520000
YBX1   4520000 perm   8718 sec   (518 perm/sec)   p_kst 8.204425e-03   p_cons 4.289823e-04   p_joint 1.944690e-04

Joint ci ratio: 1.320553e-01	ci left: 1.816371e-04	ci right 2.075298e-04	k: 880	n:4530000
Cons ci ratio: 8.891120e-02	ci left: 4.098447e-04	ci right 4.481937e-04	k: 1942	n:4530000
KS ci ratio: 2.025106e-02	ci left: 8.120453e-03	ci right 8.286799e-03	k: 37161	n:4530000
YBX1   4530000 perm   8753 sec   (518 perm/sec)   p_kst 8.203311e-03   p_cons 4.286976e-04   p_joint 1.942605e-04

Joint ci ratio: 1.317565e-01	ci left: 1.820890e-04	ci right 2.079828e-04	k: 884	n:4540000
Cons ci ratio: 8.879701e-02	ci left: 4.100188e-04	ci right 4.483323e-04	k: 1947	n:4540000
KS ci ratio: 2.023095e-02	ci left: 8.118783e-03	ci right 8.284928e-03	k: 37235	n:4540000
YBX1   4540000 perm   8789 sec   (517 perm/sec)   p_kst 8.201542e-03   p_cons 4.288546e-04   p_joint 1.947137e-04

Joint ci ratio: 1.316079e-01	ci left: 1.821139e-04	ci right 2.079797e-04	k: 886	n:4550000
Cons ci ratio: 8.866056e-02	ci left: 4.104071e-04	ci right 4.486949e-04	k: 1953	n:4550000
KS ci ratio: 2.020980e-02	ci left: 8.117996e-03	ci right 8.283949e-03	k: 37313	n:4550000
YBX1   4550000 perm   8824 sec   (516 perm/sec)   p_kst 8.200659e-03   p_cons 4.292308e-04   p_joint 1.947253e-04

Joint ci ratio: 1.313859e-01	ci left: 1.823508e-04	ci right 2.082032e-04	k: 889	n:4560000
Cons ci ratio: 8.847958e-02	ci left: 4.112226e-04	ci right 4.495041e-04	k: 1961	n:4560000
KS ci ratio: 2.019144e-02	ci left: 8.115030e-03	ci right 8.280771e-03	k: 37381	n:4560000
YBX1   4560000 perm   8860 sec   (515 perm/sec)   p_kst 8.197588e-03   p_cons 4.300439e-04   p_joint 1.949561e-04

Joint ci ratio: 1.313121e-01	ci left: 1.821634e-04	ci right 2.079736e-04	k: 890	n:4570000
Cons ci ratio: 8.838953e-02	ci left: 4.111787e-04	ci right 4.494152e-04	k: 1965	n:4570000
KS ci ratio: 2.016716e-02	ci left: 8.116867e-03	ci right 8.282444e-03	k: 37471	n:4570000
YBX1   4570000 perm   8896 sec   (514 perm/sec)   p_kst 8.199344e-03   p_cons 4.299781e-04   p_joint 1.947484e-04

Joint ci ratio: 1.307993e-01	ci left: 1.832439e-04	ci right 2.090979e-04	k: 897	n:4580000
Cons ci ratio: 8.832218e-02	ci left: 4.109215e-04	ci right 4.491034e-04	k: 1968	n:4580000
KS ci ratio: 2.014270e-02	ci left: 8.118914e-03	ci right 8.284329e-03	k: 37562	n:4580000
YBX1   4580000 perm   8933 sec   (513 perm/sec)   p_kst 8.201310e-03   p_cons 4.296943e-04   p_joint 1.958515e-04

Joint ci ratio: 1.307265e-01	ci left: 1.830554e-04	ci right 2.088674e-04	k: 898	n:4590000
Cons ci ratio: 8.814327e-02	ci left: 4.117307e-04	ci right 4.499063e-04	k: 1976	n:4590000
KS ci ratio: 2.012182e-02	ci left: 8.118134e-03	ci right 8.283359e-03	k: 37640	n:4590000
YBX1   4590000 perm   8969 sec   (512 perm/sec)   p_kst 8.200436e-03   p_cons 4.305011e-04   p_joint 1.956427e-04

Joint ci ratio: 1.305089e-01	ci left: 1.832884e-04	ci right 2.090868e-04	k: 901	n:4600000
Cons ci ratio: 8.792113e-02	ci left: 4.129617e-04	ci right 4.511500e-04	k: 1986	n:4600000
KS ci ratio: 2.010021e-02	ci left: 8.118006e-03	ci right 8.283049e-03	k: 37721	n:4600000
YBX1   4600000 perm   9006 sec   (511 perm/sec)   p_kst 8.200217e-03   p_cons 4.317391e-04   p_joint 1.958696e-04

Joint ci ratio: 1.303645e-01	ci left: 1.833105e-04	ci right 2.090812e-04	k: 903	n:4610000
Cons ci ratio: 8.776665e-02	ci left: 4.135510e-04	ci right 4.517232e-04	k: 1993	n:4610000
KS ci ratio: 2.008027e-02	ci left: 8.116583e-03	ci right 8.281432e-03	k: 37796	n:4610000
YBX1   4610000 perm   9042 sec   (510 perm/sec)   p_kst 8.198698e-03   p_cons 4.323210e-04   p_joint 1.958785e-04

Joint ci ratio: 1.302205e-01	ci left: 1.833325e-04	ci right 2.090757e-04	k: 905	n:4620000
Cons ci ratio: 8.772269e-02	ci left: 4.130792e-04	ci right 4.511878e-04	k: 1995	n:4620000
KS ci ratio: 2.005960e-02	ci left: 8.115813e-03	ci right 8.280475e-03	k: 37874	n:4620000
YBX1   4620000 perm   9078 sec   (509 perm/sec)   p_kst 8.197835e-03   p_cons 4.318182e-04   p_joint 1.958874e-04

Joint ci ratio: 1.301487e-01	ci left: 1.831454e-04	ci right 2.088471e-04	k: 906	n:4630000
Cons ci ratio: 8.770075e-02	ci left: 4.123983e-04	ci right 4.504340e-04	k: 1996	n:4630000
KS ci ratio: 2.003712e-02	ci left: 8.116551e-03	ci right 8.281041e-03	k: 37959	n:4630000
YBX1   4630000 perm   9114 sec   (508 perm/sec)   p_kst 8.198488e-03   p_cons 4.311015e-04   p_joint 1.956803e-04

Joint ci ratio: 1.300770e-01	ci left: 1.829592e-04	ci right 2.086195e-04	k: 907	n:4640000
Cons ci ratio: 8.763496e-02	ci left: 4.121419e-04	ci right 4.501240e-04	k: 1999	n:4640000
KS ci ratio: 2.001472e-02	ci left: 8.117286e-03	ci right 8.281605e-03	k: 38044	n:4640000
YBX1   4640000 perm   9152 sec   (507 perm/sec)   p_kst 8.199138e-03   p_cons 4.308190e-04   p_joint 1.954741e-04

Joint ci ratio: 1.300055e-01	ci left: 1.827738e-04	ci right 2.083929e-04	k: 908	n:4650000
Cons ci ratio: 8.752562e-02	ci left: 4.123073e-04	ci right 4.502548e-04	k: 2004	n:4650000
KS ci ratio: 1.999318e-02	ci left: 8.117376e-03	ci right 8.281517e-03	k: 38126	n:4650000
YBX1   4650000 perm   9188 sec   (506 perm/sec)   p_kst 8.199140e-03   p_cons 4.309677e-04   p_joint 1.952688e-04

Joint ci ratio: 1.299340e-01	ci left: 1.825892e-04	ci right 2.081673e-04	k: 909	n:4660000
Cons ci ratio: 8.741668e-02	ci left: 4.124720e-04	ci right 4.503850e-04	k: 2009	n:4660000
KS ci ratio: 1.997488e-02	ci left: 8.114903e-03	ci right 8.278842e-03	k: 38196	n:4660000
YBX1   4660000 perm   9225 sec   (505 perm/sec)   p_kst 8.196567e-03   p_cons 4.311159e-04   p_joint 1.950644e-04

Joint ci ratio: 1.297915e-01	ci left: 1.826126e-04	ci right 2.081637e-04	k: 911	n:4670000
Cons ci ratio: 8.724320e-02	ci left: 4.132644e-04	ci right 4.511710e-04	k: 2017	n:4670000
KS ci ratio: 1.995268e-02	ci left: 8.115636e-03	ci right 8.279407e-03	k: 38281	n:4670000
YBX1   4670000 perm   9262 sec   (504 perm/sec)   p_kst 8.197216e-03   p_cons 4.319058e-04   p_joint 1.950749e-04

Joint ci ratio: 1.296494e-01	ci left: 1.826359e-04	ci right 2.081601e-04	k: 913	n:4680000
Cons ci ratio: 8.715687e-02	ci left: 4.132174e-04	ci right 4.510803e-04	k: 2021	n:4680000
KS ci ratio: 1.993318e-02	ci left: 8.114241e-03	ci right 8.277821e-03	k: 38356	n:4680000
YBX1   4680000 perm   9299 sec   (503 perm/sec)   p_kst 8.195726e-03   p_cons 4.318376e-04   p_joint 1.950855e-04

Joint ci ratio: 1.296494e-01	ci left: 1.822465e-04	ci right 2.077163e-04	k: 913	n:4690000
Cons ci ratio: 8.709229e-02	ci left: 4.129621e-04	ci right 4.507721e-04	k: 2024	n:4690000
KS ci ratio: 1.991243e-02	ci left: 8.113912e-03	ci right 8.277314e-03	k: 38436	n:4690000
YBX1   4690000 perm   9335 sec   (502 perm/sec)   p_kst 8.195309e-03   p_cons 4.315565e-04   p_joint 1.946695e-04

Joint ci ratio: 1.294372e-01	ci left: 1.824763e-04	ci right 2.079333e-04	k: 916	n:4700000
Cons ci ratio: 8.702786e-02	ci left: 4.127078e-04	ci right 4.504652e-04	k: 2027	n:4700000
KS ci ratio: 1.989357e-02	ci left: 8.112103e-03	ci right 8.275312e-03	k: 38509	n:4700000
YBX1   4700000 perm   9373 sec   (501 perm/sec)   p_kst 8.193404e-03   p_cons 4.312766e-04   p_joint 1.948936e-04

Joint ci ratio: 1.291557e-01	ci left: 1.829107e-04	ci right 2.083686e-04	k: 920	n:4710000
Cons ci ratio: 8.698500e-02	ci left: 4.122470e-04	ci right 4.499427e-04	k: 2029	n:4710000
KS ci ratio: 1.987190e-02	ci left: 8.112626e-03	ci right 8.275665e-03	k: 38593	n:4710000
YBX1   4710000 perm   9411 sec   (500 perm/sec)   p_kst 8.193843e-03   p_cons 4.307856e-04   p_joint 1.953291e-04

Joint ci ratio: 1.289459e-01	ci left: 1.831382e-04	ci right 2.085832e-04	k: 923	n:4720000
Cons ci ratio: 8.692081e-02	ci left: 4.119953e-04	ci right 4.496389e-04	k: 2032	n:4720000
KS ci ratio: 1.984772e-02	ci left: 8.115255e-03	ci right 8.278146e-03	k: 38687	n:4720000
YBX1   4720000 perm   9448 sec   (500 perm/sec)   p_kst 8.196398e-03   p_cons 4.305085e-04   p_joint 1.955508e-04

Joint ci ratio: 1.288066e-01	ci left: 1.831603e-04	ci right 2.085787e-04	k: 925	n:4730000
Cons ci ratio: 8.681412e-02	ci left: 4.121584e-04	ci right 4.497683e-04	k: 2037	n:4730000
KS ci ratio: 1.982724e-02	ci left: 8.114927e-03	ci right 8.277642e-03	k: 38767	n:4730000
YBX1   4730000 perm   9486 sec   (499 perm/sec)   p_kst 8.195983e-03   p_cons 4.306554e-04   p_joint 1.955603e-04

Joint ci ratio: 1.286677e-01	ci left: 1.831822e-04	ci right 2.085742e-04	k: 927	n:4740000
Cons ci ratio: 8.672905e-02	ci left: 4.121145e-04	ci right 4.496816e-04	k: 2041	n:4740000
KS ci ratio: 1.980579e-02	ci left: 8.115441e-03	ci right 8.277988e-03	k: 38851	n:4740000
YBX1   4740000 perm   9524 sec   (498 perm/sec)   p_kst 8.196414e-03   p_cons 4.305907e-04   p_joint 1.955696e-04

Joint ci ratio: 1.285984e-01	ci left: 1.830003e-04	ci right 2.083524e-04	k: 928	n:4750000
Cons ci ratio: 8.664423e-02	ci left: 4.120707e-04	ci right 4.495953e-04	k: 2045	n:4750000
KS ci ratio: 1.978364e-02	ci left: 8.116581e-03	ci right 8.278967e-03	k: 38938	n:4750000
YBX1   4750000 perm   9562 sec   (497 perm/sec)   p_kst 8.197474e-03   p_cons 4.305263e-04   p_joint 1.953684e-04

Joint ci ratio: 1.282537e-01	ci left: 1.836325e-04	ci right 2.089988e-04	k: 933	n:4760000
Cons ci ratio: 8.651745e-02	ci left: 4.124382e-04	ci right 4.499385e-04	k: 2051	n:4760000
KS ci ratio: 1.976208e-02	ci left: 8.117298e-03	ci right 8.279520e-03	k: 39023	n:4760000
YBX1   4760000 perm   9600 sec   (496 perm/sec)   p_kst 8.198109e-03   p_cons 4.308824e-04   p_joint 1.960084e-04

Joint ci ratio: 1.281166e-01	ci left: 1.836534e-04	ci right 2.089934e-04	k: 935	n:4770000
Cons ci ratio: 8.647534e-02	ci left: 4.119838e-04	ci right 4.494236e-04	k: 2053	n:4770000
KS ci ratio: 1.974440e-02	ci left: 8.114883e-03	ci right 8.276910e-03	k: 39093	n:4770000
YBX1   4770000 perm   9638 sec   (495 perm/sec)   p_kst 8.195597e-03   p_cons 4.303983e-04   p_joint 1.960168e-04

Joint ci ratio: 1.280483e-01	ci left: 1.834717e-04	ci right 2.087720e-04	k: 936	n:4780000
Cons ci ratio: 8.630739e-02	ci left: 4.127594e-04	ci right 4.501932e-04	k: 2061	n:4780000
KS ci ratio: 1.972017e-02	ci left: 8.117891e-03	ci right 8.279777e-03	k: 39189	n:4780000
YBX1   4780000 perm   9676 sec   (494 perm/sec)   p_kst 8.198536e-03   p_cons 4.311715e-04   p_joint 1.958159e-04

Joint ci ratio: 1.279118e-01	ci left: 1.834928e-04	ci right 2.087671e-04	k: 938	n:4790000
Cons ci ratio: 8.630743e-02	ci left: 4.118977e-04	ci right 4.492533e-04	k: 2061	n:4790000
KS ci ratio: 1.969907e-02	ci left: 8.118394e-03	ci right 8.280114e-03	k: 39273	n:4790000
YBX1   4790000 perm   9714 sec   (493 perm/sec)   p_kst 8.198956e-03   p_cons 4.302714e-04   p_joint 1.958246e-04

Joint ci ratio: 1.275726e-01	ci left: 1.841189e-04	ci right 2.094071e-04	k: 943	n:4800000
Cons ci ratio: 8.622384e-02	ci left: 4.118549e-04	ci right 4.491687e-04	k: 2065	n:4800000
KS ci ratio: 1.967602e-02	ci left: 8.120553e-03	ci right 8.282125e-03	k: 39365	n:4800000
YBX1   4800000 perm   9752 sec   (492 perm/sec)   p_kst 8.201042e-03   p_cons 4.302083e-04   p_joint 1.964583e-04

Joint ci ratio: 1.274376e-01	ci left: 1.841387e-04	ci right 2.094008e-04	k: 945	n:4810000
Cons ci ratio: 8.614050e-02	ci left: 4.118124e-04	ci right 4.490844e-04	k: 2069	n:4810000
KS ci ratio: 1.965631e-02	ci left: 8.120013e-03	ci right 8.281411e-03	k: 39444	n:4810000
YBX1   4810000 perm   9790 sec   (491 perm/sec)   p_kst 8.200416e-03   p_cons 4.301455e-04   p_joint 1.964657e-04

Joint ci ratio: 1.273704e-01	ci left: 1.839575e-04	ci right 2.091804e-04	k: 946	n:4820000
Cons ci ratio: 8.605739e-02	ci left: 4.117700e-04	ci right 4.490004e-04	k: 2073	n:4820000
KS ci ratio: 1.963591e-02	ci left: 8.120096e-03	ci right 8.281326e-03	k: 39526	n:4820000
YBX1   4820000 perm   9828 sec   (490 perm/sec)   p_kst 8.200415e-03   p_cons 4.300830e-04   p_joint 1.962656e-04

Joint ci ratio: 1.271022e-01	ci left: 1.843784e-04	ci right 2.096018e-04	k: 950	n:4830000
Cons ci ratio: 8.589187e-02	ci left: 4.125382e-04	ci right 4.497627e-04	k: 2081	n:4830000
KS ci ratio: 1.961183e-02	ci left: 8.123268e-03	ci right 8.284361e-03	k: 39623	n:4830000
YBX1   4830000 perm   9866 sec   (490 perm/sec)   p_kst 8.203520e-03   p_cons 4.308489e-04   p_joint 1.966874e-04

Joint ci ratio: 1.270354e-01	ci left: 1.841975e-04	ci right 2.093820e-04	k: 951	n:4840000
Cons ci ratio: 8.580948e-02	ci left: 4.124945e-04	ci right 4.496776e-04	k: 2085	n:4840000
KS ci ratio: 1.959331e-02	ci left: 8.121905e-03	ci right 8.282817e-03	k: 39698	n:4840000
YBX1   4840000 perm   9904 sec   (489 perm/sec)   p_kst 8.202066e-03   p_cons 4.307851e-04   p_joint 1.964876e-04

Joint ci ratio: 1.268357e-01	ci left: 1.844167e-04	ci right 2.095884e-04	k: 954	n:4850000
Cons ci ratio: 8.574785e-02	ci left: 4.122493e-04	ci right 4.493823e-04	k: 2088	n:4850000
KS ci ratio: 1.957509e-02	ci left: 8.120342e-03	ci right 8.281071e-03	k: 39772	n:4850000
YBX1   4850000 perm   9943 sec   (488 perm/sec)   p_kst 8.200412e-03   p_cons 4.305155e-04   p_joint 1.967010e-04

Joint ci ratio: 1.267694e-01	ci left: 1.842364e-04	ci right 2.093695e-04	k: 955	n:4860000
Cons ci ratio: 8.568636e-02	ci left: 4.120051e-04	ci right 4.490881e-04	k: 2091	n:4860000
KS ci ratio: 1.955841e-02	ci left: 8.117556e-03	ci right 8.278092e-03	k: 39840	n:4860000
YBX1   4860000 perm   9981 sec   (487 perm/sec)   p_kst 8.197531e-03   p_cons 4.302469e-04   p_joint 1.965021e-04

Joint ci ratio: 1.265709e-01	ci left: 1.844546e-04	ci right 2.095751e-04	k: 958	n:4870000
Cons ci ratio: 8.556373e-02	ci left: 4.123647e-04	ci right 4.494244e-04	k: 2097	n:4870000
KS ci ratio: 1.954004e-02	ci left: 8.116213e-03	ci right 8.276570e-03	k: 39915	n:4870000
YBX1   4870000 perm   10019 sec   (486 perm/sec)   p_kst 8.196099e-03   p_cons 4.305955e-04   p_joint 1.967146e-04

Joint ci ratio: 1.264391e-01	ci left: 1.844735e-04	ci right 2.095684e-04	k: 960	n:4880000
Cons ci ratio: 8.552300e-02	ci left: 4.119208e-04	ci right 4.489220e-04	k: 2099	n:4880000
KS ci ratio: 1.951901e-02	ci left: 8.117118e-03	ci right 8.277319e-03	k: 40001	n:4880000
YBX1   4880000 perm   10058 sec   (485 perm/sec)   p_kst 8.196926e-03   p_cons 4.301230e-04   p_joint 1.967213e-04

Joint ci ratio: 1.263734e-01	ci left: 1.842943e-04	ci right 2.093508e-04	k: 961	n:4890000
Cons ci ratio: 8.548232e-02	ci left: 4.114787e-04	ci right 4.484218e-04	k: 2101	n:4890000
KS ci ratio: 1.949585e-02	ci left: 8.119851e-03	ci right 8.279914e-03	k: 40096	n:4890000
YBX1   4890000 perm   10097 sec   (484 perm/sec)   p_kst 8.199591e-03   p_cons 4.296524e-04   p_joint 1.965235e-04

Joint ci ratio: 1.263735e-01	ci left: 1.839182e-04	ci right 2.089236e-04	k: 961	n:4900000
Cons ci ratio: 8.542140e-02	ci left: 4.112381e-04	ci right 4.481319e-04	k: 2104	n:4900000
KS ci ratio: 1.947643e-02	ci left: 8.119527e-03	ci right 8.279422e-03	k: 40176	n:4900000
YBX1   4900000 perm   10135 sec   (483 perm/sec)   p_kst 8.199184e-03   p_cons 4.293878e-04   p_joint 1.961224e-04

Joint ci ratio: 1.263735e-01	ci left: 1.835436e-04	ci right 2.084981e-04	k: 961	n:4910000
Cons ci ratio: 8.540114e-02	ci left: 4.105998e-04	ci right 4.474273e-04	k: 2105	n:4910000
KS ci ratio: 1.946146e-02	ci left: 8.115556e-03	ci right 8.275249e-03	k: 40238	n:4910000
YBX1   4910000 perm   10176 sec   (483 perm/sec)   p_kst 8.195112e-03   p_cons 4.287169e-04   p_joint 1.957230e-04

Joint ci ratio: 1.262423e-01	ci left: 1.835642e-04	ci right 2.084936e-04	k: 963	n:4920000
Cons ci ratio: 8.532016e-02	ci left: 4.105609e-04	ci right 4.473482e-04	k: 2109	n:4920000
KS ci ratio: 1.944045e-02	ci left: 8.116658e-03	ci right 8.276198e-03	k: 40325	n:4920000
YBX1   4920000 perm   10215 sec   (482 perm/sec)   p_kst 8.196138e-03   p_cons 4.286585e-04   p_joint 1.957317e-04

Joint ci ratio: 1.261116e-01	ci left: 1.835848e-04	ci right 2.084892e-04	k: 965	n:4930000
Cons ci ratio: 8.521924e-02	ci left: 4.107207e-04	ci right 4.474766e-04	k: 2114	n:4930000
KS ci ratio: 1.942144e-02	ci left: 8.116141e-03	ci right 8.275513e-03	k: 40404	n:4930000
YBX1   4930000 perm   10253 sec   (481 perm/sec)   p_kst 8.195538e-03   p_cons 4.288032e-04   p_joint 1.957404e-04

Joint ci ratio: 1.259162e-01	ci left: 1.838013e-04	ci right 2.086936e-04	k: 968	n:4940000
Cons ci ratio: 8.509860e-02	ci left: 4.110780e-04	ci right 4.478112e-04	k: 2120	n:4940000
KS ci ratio: 1.940031e-02	ci left: 8.117439e-03	ci right 8.276661e-03	k: 40492	n:4940000
YBX1   4940000 perm   10292 sec   (480 perm/sec)   p_kst 8.196761e-03   p_cons 4.291498e-04   p_joint 1.959514e-04

Joint ci ratio: 1.259162e-01	ci left: 1.834300e-04	ci right 2.082720e-04	k: 968	n:4950000
Cons ci ratio: 8.505853e-02	ci left: 4.106430e-04	ci right 4.473192e-04	k: 2122	n:4950000
KS ci ratio: 1.937950e-02	ci left: 8.118531e-03	ci right 8.277601e-03	k: 40579	n:4950000
YBX1   4950000 perm   10331 sec   (479 perm/sec)   p_kst 8.197778e-03   p_cons 4.286869e-04   p_joint 1.955556e-04

Joint ci ratio: 1.256571e-01	ci left: 1.838412e-04	ci right 2.086839e-04	k: 972	n:4960000
Cons ci ratio: 8.497852e-02	ci left: 4.106044e-04	ci right 4.472410e-04	k: 2126	n:4960000
KS ci ratio: 1.935731e-02	ci left: 8.120822e-03	ci right 8.279753e-03	k: 40672	n:4960000
YBX1   4960000 perm   10370 sec   (478 perm/sec)   p_kst 8.200000e-03   p_cons 4.286290e-04   p_joint 1.959677e-04

Joint ci ratio: 1.253354e-01	ci left: 1.844458e-04	ci right 2.093016e-04	k: 977	n:4970000
Cons ci ratio: 8.489873e-02	ci left: 4.105660e-04	ci right 4.471630e-04	k: 2130	n:4970000
KS ci ratio: 1.933400e-02	ci left: 8.124105e-03	ci right 8.282907e-03	k: 40770	n:4970000
YBX1   4970000 perm   10409 sec   (477 perm/sec)   p_kst 8.203219e-03   p_cons 4.285714e-04   p_joint 1.965795e-04

Joint ci ratio: 1.253355e-01	ci left: 1.840754e-04	ci right 2.088813e-04	k: 977	n:4980000
Cons ci ratio: 8.485893e-02	ci left: 4.101346e-04	ci right 4.466752e-04	k: 2132	n:4980000
KS ci ratio: 1.931268e-02	ci left: 8.125777e-03	ci right 8.284434e-03	k: 40860	n:4980000
YBX1   4980000 perm   10448 sec   (477 perm/sec)   p_kst 8.204819e-03   p_cons 4.281124e-04   p_joint 1.961847e-04

Joint ci ratio: 1.250799e-01	ci left: 1.844830e-04	ci right 2.092894e-04	k: 981	n:4990000
Cons ci ratio: 8.477948e-02	ci left: 4.100973e-04	ci right 4.465987e-04	k: 2136	n:4990000
KS ci ratio: 1.929570e-02	ci left: 8.123852e-03	ci right 8.282331e-03	k: 40932	n:4990000
YBX1   4990000 perm   10488 sec   (476 perm/sec)   p_kst 8.202806e-03   p_cons 4.280561e-04   p_joint 1.965932e-04

Joint ci ratio: 1.250799e-01	ci left: 1.841140e-04	ci right 2.088708e-04	k: 981	n:5000000
Cons ci ratio: 8.464094e-02	ci left: 4.106475e-04	ci right 4.471351e-04	k: 2143	n:5000000
KS ci ratio: 1.927830e-02	ci left: 8.122333e-03	ci right 8.280638e-03	k: 41006	n:5000000
YBX1   5000000 perm   10529 sec   (475 perm/sec)   p_kst 8.201200e-03   p_cons 4.286000e-04   p_joint 1.962000e-04

Outputting figure to mutsig2_images.part000000000192/YBX1.4_1003_5000000_0.0082012_0.0004286_0.0001962.png
                gene_name: YBX1
               theta_stop: 0.13 
                    nperm: 5000000 
                     p_ks: 0.0082 
        ci_ks_bounds_left: 0.0081 
       ci_ks_bounds_right: 0.0083 
                   p_cons: 0.00043 
      ci_cons_bounds_left: 0.00041 
     ci_cons_bounds_right: 0.00045 
                  p_joint: 0.00020 
     ci_joint_bounds_left: 0.00018 
    ci_joint_bounds_right: 0.00021 

Current progress: 33 percent done.
XRCC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.748333e-02	ci left: 1.598358e-01	ci right 1.745586e-01	k: 1671	n:10000
Cons ci ratio: 1.122450e-01	ci left: 1.025665e-01	ci right 1.148625e-01	k: 1086	n:10000
KS ci ratio: 7.969522e-02	ci left: 1.869789e-01	ci right 2.025993e-01	k: 1947	n:10000
XRCC6   10000 perm   2 sec   (5967 perm/sec)   p_kst 1.947000e-01   p_cons 1.086000e-01   p_joint 1.671000e-01

Joint ci ratio: 8.984865e-02	ci left: 8.298234e-02	ci right 9.083824e-02	k: 1737	n:20000
Cons ci ratio: 7.677970e-02	ci left: 1.108556e-01	ci right 1.197565e-01	k: 2305	n:20000
KS ci ratio: 5.634478e-02	ci left: 1.893308e-01	ci right 2.003580e-01	k: 3896	n:20000
XRCC6   20000 perm   4 sec   (5288 perm/sec)   p_kst 1.948000e-01   p_cons 1.152500e-01   p_joint 8.685000e-02

Outputting figure to mutsig2_images.part000000000192/XRCC6.2_1878_20000_0.1948_0.11525_0.08685.png
                gene_name: XRCC6
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.087 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.091 

Current progress: 67 percent done.
ZAN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.314893e-02	ci left: 5.732631e-01	ci right 5.926885e-01	k: 5830	n:10000
Cons ci ratio: 1.808054e-02	ci left: 8.170019e-01	ci right 8.320086e-01	k: 8246	n:10000
KS ci ratio: 7.717009e-02	ci left: 1.971244e-01	ci right 2.130478e-01	k: 2050	n:10000
ZAN   10000 perm   2 sec   (4113 perm/sec)   p_kst 2.050000e-01   p_cons 8.246000e-01   p_joint 5.830000e-01

Outputting figure to mutsig2_images.part000000000192/ZAN.2_8691_10000_0.205_0.8246_0.583.png
                gene_name: ZAN
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000192
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 192 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1709>
Subject: Job 9878379: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1709>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000193> was used as the working directory.
Started at Fri Oct  5 23:02:55 2012
Results reported at Fri Oct  5 23:04:24 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000193.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000193.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 193  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000193.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     94.62 sec.
    Max Memory :      1132 MB
    Max Swap   :      4060 MB

    Max Processes  :         7
    Max Threads    :        55

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
193
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 193
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 193: processing genes 17410 - 17499
Calculating significance of each gene.
Using projection method.
17410	ZBTB2	1
17411	ZBTB20	1
17412	ZBTB22	1
17413	ZBTB24	1
17414	ZBTB25	1
17415	ZBTB26	1
17416	ZBTB3	1.631205e-01
17417	ZBTB32	1.192611e-01
17418	ZBTB33	1
17419	ZBTB34	3.540595e-02
17420	ZBTB37	1
17421	ZBTB38	2.430411e-01
17422	ZBTB39	1
17423	ZBTB4	1
17424	ZBTB40	1
17425	ZBTB41	1
17426	ZBTB43	1
17427	ZBTB44	1
17428	ZBTB45	1
17429	ZBTB46	1
17430	ZBTB47	1
17431	ZBTB48	1
17432	ZBTB49	1
17433	ZBTB5	1
17434	ZBTB6	1
17435	ZBTB7A	1
17436	ZBTB7B	1.613359e-01
17437	ZBTB7C	1
17438	ZBTB8A	1
17439	ZBTB8OS	1
17440	ZBTB9	1
17441	ZC3H10	1
17442	ZC3H11A	8.089445e-02
17443	ZC3H12A	1
17444	ZC3H12B	1
17445	ZC3H12C	1
17446	ZC3H12D	1
17447	ZC3H13	1
17448	ZC3H14	1
17449	ZC3H15	1
17450	ZC3H18	1
17451	ZC3H3	1
17452	ZC3H4	1.793369e-01
17453	ZC3H6	1.652455e-01
17454	ZC3H7A	1
17455	ZC3H7B	1
17456	ZC3H8	1
17457	ZC3HAV1	2.198083e-02
17458	ZC3HAV1L	1
17459	ZC3HC1	1
17460	ZC4H2	1
In gene ZCCHC10 the following bins exceed PROBCAP:
    PRAD-CH-5772	categ 6	N = 529     n = 1	mu =   3.94e-07
17461	ZCCHC10	2.647656e-02
17462	ZCCHC11	1
17463	ZCCHC12	6.095761e-02
17464	ZCCHC13	1
17465	ZCCHC14	2.817611e-01
17466	ZCCHC16	1
17467	ZCCHC17	1
17468	ZCCHC18	1
17469	ZCCHC2	1
17470	ZCCHC24	1
In gene ZCCHC3 the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 680     n = 1	mu =   6.75e-07
17471	ZCCHC3	5.813458e-02
17472	ZCCHC4	1
17473	ZCCHC5	2.411269e-02
17474	ZCCHC6	1
17475	ZCCHC7	2.004705e-02
17476	ZCCHC8	1
17477	ZCCHC9	1
17478	ZCRB1	1
17479	ZCWPW1	1
17480	ZCWPW2	1
17481	ZDBF2	7.876116e-02
17482	ZDHHC1	1
17483	ZDHHC11	3.934775e-02
17484	ZDHHC12	1
17485	ZDHHC13	1
17486	ZDHHC14	1
17487	ZDHHC15	1
17488	ZDHHC16	1
17489	ZDHHC17	1
17490	ZDHHC18	1
17491	ZDHHC19	1
17492	ZDHHC2	1
In gene ZDHHC20 the following bins exceed PROBCAP:
    PRAD-EJ-5508	categ 6	N = 788     n = 1	mu =   2.32e-07
17493	ZDHHC20	1.888992e-02
17494	ZDHHC21	1
17495	ZDHHC22	1
17496	ZDHHC23	1
17497	ZDHHC24	1
17498	ZDHHC3	1
17499	ZDHHC4	1
Done

Running MutSig 2:
Scatter job 193: processing genes 17410 - 17499
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ZC3HAV1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.292450e-02	ci left: 5.765733e-01	ci right 5.959764e-01	k: 5863	n:10000
KS ci ratio: 3.249207e-02	ci left: 5.829942e-01	ci right 6.023518e-01	k: 5927	n:10000
ZC3HAV1   10000 perm   2 sec   (5618 perm/sec)   p_kst 5.927000e-01   p_cons 5.863000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000193/ZC3HAV1.2_2765_10000_0.5927_0.5863_1.png
                gene_name: ZC3HAV1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
ZDBF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.041773e-02	ci left: 9.290595e-01	ci right 9.388858e-01	k: 9341	n:10000
Cons ci ratio: 4.029907e-02	ci left: 4.762592e-01	ci right 4.959489e-01	k: 4861	n:10000
KS ci ratio: 5.520517e-02	ci left: 3.258476e-01	ci right 3.444485e-01	k: 3351	n:10000
ZDBF2   10000 perm   2 sec   (4366 perm/sec)   p_kst 3.351000e-01   p_cons 4.861000e-01   p_joint 9.341000e-01

Outputting figure to mutsig2_images.part000000000193/ZDBF2.2_7077_10000_0.3351_0.4861_0.9341.png
                gene_name: ZDBF2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000193
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 193 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1543>
Subject: Job 9878380: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1543>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000194> was used as the working directory.
Started at Fri Oct  5 23:02:55 2012
Results reported at Fri Oct  5 23:05:05 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000194.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000194.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 194  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000194.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    161.01 sec.
    Max Memory :      2119 MB
    Max Swap   :      4750 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
194
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 194
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 194: processing genes 17500 - 17590
Calculating significance of each gene.
Using projection method.
17500	ZDHHC5	1
17501	ZDHHC6	1
17502	ZDHHC7	1
17503	ZDHHC8	1
17504	ZDHHC9	1
17505	ZEB1	1
17506	ZEB2	1
17507	ZER1	1
17508	ZFAND1	1
17509	ZFAND2A	1
17510	ZFAND2B	1
17511	ZFAND3	1
17512	ZFAND5	4.618446e-02
17513	ZFAND6	1
17514	ZFAT	8.784158e-02
17515	ZFC3H1	2.404190e-01
17516	ZFHX3	7.069462e-01
17517	ZFHX4	4.921714e-01
17518	ZFP1	1
17519	ZFP106	1
17520	ZFP112	1
17521	ZFP14	1
17522	ZFP161	1
17523	ZFP2	1
17524	ZFP28	1.105482e-01
17525	ZFP3	6.381441e-02
17526	ZFP30	1
17527	ZFP36	1
17528	ZFP36L1	5.154481e-02
17529	ZFP36L2	1
17530	ZFP37	1
17531	ZFP41	1
17532	ZFP42	1
17533	ZFP57	1
17534	ZFP64	1
17535	ZFP82	1
17536	ZFP90	1
17537	ZFP91	1
17538	ZFPL1	1
17539	ZFPM1	1
17540	ZFPM2	1.072679e-02
17541	ZFR	1
17542	ZFR2	1
17543	ZFX	1
17544	ZFY	1
17545	ZFYVE1	1
17546	ZFYVE16	2.024620e-01
17547	ZFYVE19	1
17548	ZFYVE20	1
17549	ZFYVE21	1
17550	ZFYVE26	2.737113e-01
17551	ZFYVE27	1
17552	ZFYVE28	1
17553	ZFYVE9	2.382836e-01
17554	ZG16B	1
17555	ZGLP1	1
17556	ZGPAT	1
17557	ZHX1	1.047738e-01
17558	ZHX2	2.025980e-01
17559	ZHX3	1
17560	ZIC1	1.122231e-02
17561	ZIC2	1
17562	ZIC3	1
17563	ZIC4	1
17564	ZIC5	1
17565	ZIK1	1
17566	ZIM2	1
17567	ZIM3	1
17568	ZKSCAN1	1
17569	ZKSCAN2	1
17570	ZKSCAN3	1
17571	ZKSCAN4	1
17572	ZKSCAN5	2.318783e-01
17573	ZMAT1	1
17574	ZMAT2	1
17575	ZMAT3	1
17576	ZMAT4	1
17577	ZMAT5	1
17578	ZMIZ1	1
17579	ZMIZ2	1
17580	ZMPSTE24	1
17581	ZMYM1	1
17582	ZMYM2	1
In gene ZMYM3 the following bins exceed PROBCAP:
    PRAD-CH-5772	categ 6	N = 3841    n = 1	mu =   3.94e-07
17583	ZMYM3	3.988066e-04
17584	ZMYM4	2.429779e-01
17585	ZMYM5	1
17586	ZMYM6	1
17587	ZMYND10	1
17588	ZMYND11	1
17589	ZMYND12	7.185743e-02
17590	ZMYND15	1
Done

Running MutSig 2:
Scatter job 194: processing genes 17500 - 17590
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ZMYM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.319010e-02	ci left: 4.418115e-01	ci right 4.614167e-01	k: 4516	n:10000
Cons ci ratio: 6.649439e-02	ci left: 2.492482e-01	ci right 2.664931e-01	k: 2578	n:10000
KS ci ratio: 1.635299e-02	ci left: 8.446839e-01	ci right 8.587105e-01	k: 8518	n:10000
ZMYM3   10000 perm   3 sec   (3862 perm/sec)   p_kst 8.518000e-01   p_cons 2.578000e-01   p_joint 4.516000e-01

Outputting figure to mutsig2_images.part000000000194/ZMYM3.4_4227_10000_0.8518_0.2578_0.4516.png
                gene_name: ZMYM3
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 33 percent done.
ZFPM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.045991e-02	ci left: 9.285426e-01	ci right 9.384031e-01	k: 9336	n:10000
KS ci ratio: 4.147021e-02	ci left: 4.619752e-01	ci right 4.816412e-01	k: 4718	n:10000
ZFPM2   10000 perm   2 sec   (5229 perm/sec)   p_kst 4.718000e-01   p_cons 9.336000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000194/ZFPM2.2_3488_10000_0.4718_0.9336_1.png
                gene_name: ZFPM2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
ZIC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.017651e-01	ci left: 1.225867e-01	ci right 1.358301e-01	k: 1291	n:10000
Cons ci ratio: 1.451179e-01	ci left: 6.304562e-02	ci right 7.300781e-02	k: 679	n:10000
KS ci ratio: 3.702067e-02	ci left: 5.186590e-01	ci right 5.383244e-01	k: 5285	n:10000
ZIC1   10000 perm   2 sec   (5871 perm/sec)   p_kst 5.285000e-01   p_cons 6.790000e-02   p_joint 1.291000e-01

Joint ci ratio: 1.159460e-02	ci left: 8.460903e-01	ci right 8.560074e-01	k: 17022	n:20000
Cons ci ratio: 1.035173e-01	ci left: 6.342669e-02	ci right 7.039986e-02	k: 1337	n:20000
KS ci ratio: 2.607190e-02	ci left: 5.236044e-01	ci right 5.374867e-01	k: 10611	n:20000
ZIC1   20000 perm   4 sec   (5362 perm/sec)   p_kst 5.305500e-01   p_cons 6.685000e-02   p_joint 8.511000e-01

Joint ci ratio: 2.214885e-02	ci left: 5.050926e-01	ci right 5.164387e-01	k: 15323	n:30000
Cons ci ratio: 8.518353e-02	ci left: 6.311792e-02	ci right 6.876649e-02	k: 1977	n:30000
KS ci ratio: 2.134444e-02	ci left: 5.235658e-01	ci right 5.348952e-01	k: 15877	n:30000
ZIC1   30000 perm   6 sec   (5152 perm/sec)   p_kst 5.292333e-01   p_cons 6.590000e-02   p_joint 5.107667e-01

Outputting figure to mutsig2_images.part000000000194/ZIC1.2_1356_30000_0.52923_0.0659_0.51077.png
                gene_name: ZIC1
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.066 
      ci_cons_bounds_left: 0.063 
     ci_cons_bounds_right: 0.069 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.52 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000194
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 194 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1642>
Subject: Job 9878383: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1642>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000195> was used as the working directory.
Started at Fri Oct  5 23:02:55 2012
Results reported at Fri Oct  5 23:04:11 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000195.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000195.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 195  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000195.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    101.35 sec.
    Max Memory :      1744 MB
    Max Swap   :      4698 MB

    Max Processes  :         7
    Max Threads    :        91

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
195
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 195
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 195: processing genes 17591 - 17681
Calculating significance of each gene.
Using projection method.
17591	ZMYND17	1
17592	ZMYND19	1
17593	ZMYND8	1
17594	ZNF10	1
17595	ZNF100	1
17596	ZNF101	1
17597	ZNF107	1
17598	ZNF114	1
17599	ZNF117	1
17600	ZNF12	1
17601	ZNF121	1
17602	ZNF124	1
17603	ZNF131	1.643315e-01
17604	ZNF132	1
17605	ZNF133	1
17606	ZNF134	7.543370e-02
17607	ZNF135	1
17608	ZNF136	1
17609	ZNF138	1
17610	ZNF14	1
17611	ZNF140	1
17612	ZNF141	1
17613	ZNF142	1
17614	ZNF143	1
17615	ZNF146	1
17616	ZNF148	1
17617	ZNF154	1
17618	ZNF155	1
17619	ZNF157	1
17620	ZNF16	1
17621	ZNF160	1
17622	ZNF165	1
17623	ZNF167	3.630603e-02
17624	ZNF169	1
17625	ZNF17	1.678057e-01
17626	ZNF174	1
17627	ZNF175	1
17628	ZNF177	3.966217e-02
17629	ZNF18	1
17630	ZNF180	1
17631	ZNF181	5.327602e-03
17632	ZNF182	6.297600e-02
17633	ZNF184	1
17634	ZNF185	1
17635	ZNF187	6.691116e-02
17636	ZNF189	1
17637	ZNF19	1
17638	ZNF192	1
17639	ZNF193	1
17640	ZNF195	1
17641	ZNF197	1
17642	ZNF2	1
17643	ZNF20	1
17644	ZNF200	1
17645	ZNF202	1
17646	ZNF205	1
17647	ZNF207	1
17648	ZNF208	2.518817e-01
17649	ZNF211	1
17650	ZNF212	8.496487e-02
17651	ZNF213	1
17652	ZNF214	1.541669e-01
17653	ZNF215	1
17654	ZNF217	1
17655	ZNF219	1
17656	ZNF22	1
17657	ZNF221	1
17658	ZNF222	1
17659	ZNF223	1
17660	ZNF224	1
17661	ZNF225	1
17662	ZNF226	1
17663	ZNF227	1
17664	ZNF229	1
17665	ZNF23	1
17666	ZNF230	1
17667	ZNF232	1
17668	ZNF233	1
17669	ZNF234	1
17670	ZNF235	1
17671	ZNF236	1
17672	ZNF238	1
17673	ZNF239	1
17674	ZNF24	2.090154e-02
17675	ZNF248	1
17676	ZNF25	1
17677	ZNF250	1
17678	ZNF251	1
17679	ZNF253	1
17680	ZNF254	1
17681	ZNF256	1
Done

Running MutSig 2:
Scatter job 195: processing genes 17591 - 17681
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ZNF181
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.380712e-02	ci left: 1.719241e-01	ci right 1.870631e-01	k: 1794	n:10000
Cons ci ratio: 9.180449e-02	ci left: 1.470751e-01	ci right 1.613269e-01	k: 1541	n:10000
KS ci ratio: 6.541742e-02	ci left: 2.554791e-01	ci right 2.728584e-01	k: 2641	n:10000
ZNF181   10000 perm   2 sec   (5633 perm/sec)   p_kst 2.641000e-01   p_cons 1.541000e-01   p_joint 1.794000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF181.3_1732_10000_0.2641_0.1541_0.1794.png
                gene_name: ZNF181
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000195
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 195 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1540>
Subject: Job 9878389: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1540>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000196> was used as the working directory.
Started at Fri Oct  5 23:02:55 2012
Results reported at Sat Oct  6 02:28:35 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000196.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000196.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 196  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000196.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  12814.14 sec.
    Max Memory :      2062 MB
    Max Swap   :      4704 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
196
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 196
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 196: processing genes 17682 - 17771
Calculating significance of each gene.
Using projection method.
17682	ZNF257	3.650476e-03
17683	ZNF259	1
17684	ZNF260	1
17685	ZNF263	1
17686	ZNF264	1.170067e-01
17687	ZNF266	1
17688	ZNF267	1
17689	ZNF268	1
17690	ZNF273	1
17691	ZNF274	1
17692	ZNF275	1
17693	ZNF276	8.737525e-02
17694	ZNF277	1
17695	ZNF28	1
17696	ZNF280A	1
17697	ZNF280B	1
17698	ZNF280C	1
17699	ZNF280D	1
17700	ZNF281	1
17701	ZNF282	1
17702	ZNF283	2.744275e-02
17703	ZNF284	1
17704	ZNF285	5.816858e-05
17705	ZNF286A	1
17706	ZNF286B	1
17707	ZNF287	1
In gene ZNF292 the following bins exceed PROBCAP:
    PRAD-EJ-5542	categ 6	N = 7958    n = 1	mu =   1.32e-07
17708	ZNF292	2.447680e-01
17709	ZNF295	1
17710	ZNF296	1
17711	ZNF3	1
17712	ZNF30	1
17713	ZNF300	1
17714	ZNF302	1
17715	ZNF304	1
17716	ZNF311	1
17717	ZNF317	2.294468e-01
17718	ZNF318	1
17719	ZNF319	1
17720	ZNF32	1
17721	ZNF320	1
17722	ZNF321	1
17723	ZNF322A	1
17724	ZNF322B	1
17725	ZNF323	1.203458e-01
17726	ZNF324	1
17727	ZNF324B	1
17728	ZNF326	1
17729	ZNF329	1
17730	ZNF330	1
17731	ZNF331	1
17732	ZNF333	1.081313e-01
17733	ZNF334	1
17734	ZNF335	1
17735	ZNF337	1
17736	ZNF33A	2.002827e-01
17737	ZNF33B	1
17738	ZNF34	1
17739	ZNF341	1.765515e-01
17740	ZNF343	1
17741	ZNF345	1
17742	ZNF346	1
17743	ZNF347	1
17744	ZNF35	1
17745	ZNF350	1
17746	ZNF354A	1
17747	ZNF354B	1
17748	ZNF354C	1
17749	ZNF358	1
17750	ZNF362	1
17751	ZNF365	1
17752	ZNF366	2.246448e-01
17753	ZNF367	1
17754	ZNF37A	1
17755	ZNF382	1
17756	ZNF383	1
17757	ZNF384	1
17758	ZNF385A	1
17759	ZNF385B	1
17760	ZNF385D	1
17761	ZNF391	1
17762	ZNF394	1
In gene ZNF395 the following bins exceed PROBCAP:
    PRAD-CH-5745	categ 6	N = 1528    n = 1	mu =   1.32e-07
17763	ZNF395	2.487155e-02
17764	ZNF396	1
17765	ZNF397	1
17766	ZNF397OS	1
17767	ZNF398	1
17768	ZNF404	1
17769	ZNF407	1
17770	ZNF408	1
17771	ZNF41	1
Done

Running MutSig 2:
Scatter job 196: processing genes 17682 - 17771
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ZNF285
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
ZNF285   10000 perm   2 sec   (4848 perm/sec)   p_kst 1.000000e-04   p_cons 1.000000e-04   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
ZNF285   20000 perm   7 sec   (2667 perm/sec)   p_kst 5.000000e-05   p_cons 5.000000e-05   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
KS ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
ZNF285   30000 perm   10 sec   (3010 perm/sec)   p_kst 3.333333e-05   p_cons 3.333333e-05   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 2.263100e+00	ci left: 6.055289e-06	ci right 1.806054e-04	k: 2	n:40000
KS ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
ZNF285   40000 perm   12 sec   (3230 perm/sec)   p_kst 2.500000e-05   p_cons 5.000000e-05   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 2.263123e+00	ci left: 4.844222e-06	ci right 1.444862e-04	k: 2	n:50000
KS ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
ZNF285   50000 perm   15 sec   (3301 perm/sec)   p_kst 2.000000e-05   p_cons 4.000000e-05   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
KS ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
ZNF285   60000 perm   18 sec   (3398 perm/sec)   p_kst 1.666667e-05   p_cons 1.666667e-05   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
KS ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
ZNF285   70000 perm   20 sec   (3435 perm/sec)   p_kst 1.428571e-05   p_cons 1.428571e-05   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
KS ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
ZNF285   80000 perm   23 sec   (3426 perm/sec)   p_kst 1.250000e-05   p_cons 1.250000e-05   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
KS ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
ZNF285   90000 perm   27 sec   (3380 perm/sec)   p_kst 1.111111e-05   p_cons 1.111111e-05   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
KS ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
ZNF285   100000 perm   30 sec   (3320 perm/sec)   p_kst 1.000000e-05   p_cons 1.000000e-05   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
KS ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
ZNF285   110000 perm   33 sec   (3312 perm/sec)   p_kst 9.090909e-06   p_cons 9.090909e-06   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
KS ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
ZNF285   120000 perm   37 sec   (3275 perm/sec)   p_kst 8.333333e-06   p_cons 8.333333e-06   p_joint 0

Joint ci ratio: 3.919970e+00	ci left: 0	ci right 2.837559e-05	k: 0	n:130000
Cons ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
KS ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
ZNF285   130000 perm   40 sec   (3254 perm/sec)   p_kst 7.692308e-06   p_cons 7.692308e-06   p_joint 0

Joint ci ratio: 3.919972e+00	ci left: 0	ci right 2.634879e-05	k: 0	n:140000
Cons ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
KS ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
ZNF285   140000 perm   44 sec   (3213 perm/sec)   p_kst 7.142857e-06   p_cons 7.142857e-06   p_joint 0

Joint ci ratio: 3.919974e+00	ci left: 0	ci right 2.459223e-05	k: 0	n:150000
Cons ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
KS ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
ZNF285   150000 perm   47 sec   (3192 perm/sec)   p_kst 6.666667e-06   p_cons 6.666667e-06   p_joint 0

Joint ci ratio: 3.919976e+00	ci left: 0	ci right 2.305523e-05	k: 0	n:160000
Cons ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
KS ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
ZNF285   160000 perm   50 sec   (3176 perm/sec)   p_kst 6.250000e-06   p_cons 6.250000e-06   p_joint 0

Joint ci ratio: 3.919977e+00	ci left: 0	ci right 2.169906e-05	k: 0	n:170000
Cons ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
KS ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
ZNF285   170000 perm   54 sec   (3137 perm/sec)   p_kst 5.882353e-06   p_cons 5.882353e-06   p_joint 0

Joint ci ratio: 3.919978e+00	ci left: 0	ci right 2.049356e-05	k: 0	n:180000
Cons ci ratio: 2.771835e+00	ci left: 1.406545e-07	ci right 3.095318e-05	k: 1	n:180000
KS ci ratio: 2.771835e+00	ci left: 1.406545e-07	ci right 3.095318e-05	k: 1	n:180000
ZNF285   180000 perm   58 sec   (3094 perm/sec)   p_kst 5.555556e-06   p_cons 5.555556e-06   p_joint 0

Joint ci ratio: 3.919979e+00	ci left: 0	ci right 1.941497e-05	k: 0	n:190000
Cons ci ratio: 2.771837e+00	ci left: 1.332516e-07	ci right 2.932409e-05	k: 1	n:190000
KS ci ratio: 2.771837e+00	ci left: 1.332516e-07	ci right 2.932409e-05	k: 1	n:190000
ZNF285   190000 perm   62 sec   (3047 perm/sec)   p_kst 5.263158e-06   p_cons 5.263158e-06   p_joint 0

Joint ci ratio: 3.919980e+00	ci left: 0	ci right 1.844423e-05	k: 0	n:200000
Cons ci ratio: 2.771838e+00	ci left: 1.265890e-07	ci right 2.785790e-05	k: 1	n:200000
KS ci ratio: 2.771838e+00	ci left: 1.265890e-07	ci right 2.785790e-05	k: 1	n:200000
ZNF285   200000 perm   66 sec   (3026 perm/sec)   p_kst 5.000000e-06   p_cons 5.000000e-06   p_joint 0

Joint ci ratio: 3.919981e+00	ci left: 0	ci right 1.756594e-05	k: 0	n:210000
Cons ci ratio: 2.771839e+00	ci left: 1.205610e-07	ci right 2.653135e-05	k: 1	n:210000
KS ci ratio: 2.771839e+00	ci left: 1.205610e-07	ci right 2.653135e-05	k: 1	n:210000
ZNF285   210000 perm   70 sec   (2990 perm/sec)   p_kst 4.761905e-06   p_cons 4.761905e-06   p_joint 0

Joint ci ratio: 3.919982e+00	ci left: 0	ci right 1.676749e-05	k: 0	n:220000
Cons ci ratio: 2.771840e+00	ci left: 1.150809e-07	ci right 2.532539e-05	k: 1	n:220000
KS ci ratio: 2.771840e+00	ci left: 1.150809e-07	ci right 2.532539e-05	k: 1	n:220000
ZNF285   220000 perm   75 sec   (2951 perm/sec)   p_kst 4.545455e-06   p_cons 4.545455e-06   p_joint 0

Joint ci ratio: 3.919983e+00	ci left: 0	ci right 1.603848e-05	k: 0	n:230000
Cons ci ratio: 2.771841e+00	ci left: 1.100774e-07	ci right 2.422430e-05	k: 1	n:230000
KS ci ratio: 2.771841e+00	ci left: 1.100774e-07	ci right 2.422430e-05	k: 1	n:230000
ZNF285   230000 perm   78 sec   (2931 perm/sec)   p_kst 4.347826e-06   p_cons 4.347826e-06   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.537021e-05	k: 0	n:240000
Cons ci ratio: 2.771841e+00	ci left: 1.054909e-07	ci right 2.321496e-05	k: 1	n:240000
KS ci ratio: 2.771841e+00	ci left: 1.054909e-07	ci right 2.321496e-05	k: 1	n:240000
ZNF285   240000 perm   83 sec   (2886 perm/sec)   p_kst 4.166667e-06   p_cons 4.166667e-06   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.475541e-05	k: 0	n:250000
Cons ci ratio: 2.771842e+00	ci left: 1.012712e-07	ci right 2.228637e-05	k: 1	n:250000
KS ci ratio: 2.771842e+00	ci left: 1.012712e-07	ci right 2.228637e-05	k: 1	n:250000
ZNF285   250000 perm   88 sec   (2849 perm/sec)   p_kst 4.000000e-06   p_cons 4.000000e-06   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.418790e-05	k: 0	n:260000
Cons ci ratio: 2.771843e+00	ci left: 9.737618e-08	ci right 2.142921e-05	k: 1	n:260000
KS ci ratio: 2.771843e+00	ci left: 9.737618e-08	ci right 2.142921e-05	k: 1	n:260000
ZNF285   260000 perm   92 sec   (2820 perm/sec)   p_kst 3.846154e-06   p_cons 3.846154e-06   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.366242e-05	k: 0	n:270000
Cons ci ratio: 2.771843e+00	ci left: 9.376965e-08	ci right 2.063554e-05	k: 1	n:270000
KS ci ratio: 2.771843e+00	ci left: 9.376965e-08	ci right 2.063554e-05	k: 1	n:270000
ZNF285   270000 perm   96 sec   (2798 perm/sec)   p_kst 3.703704e-06   p_cons 3.703704e-06   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.317448e-05	k: 0	n:280000
Cons ci ratio: 2.771844e+00	ci left: 9.042074e-08	ci right 1.989856e-05	k: 1	n:280000
KS ci ratio: 2.771844e+00	ci left: 9.042074e-08	ci right 1.989856e-05	k: 1	n:280000
ZNF285   280000 perm   101 sec   (2777 perm/sec)   p_kst 3.571429e-06   p_cons 3.571429e-06   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.272019e-05	k: 0	n:290000
Cons ci ratio: 2.771844e+00	ci left: 8.730278e-08	ci right 1.921241e-05	k: 1	n:290000
KS ci ratio: 2.771844e+00	ci left: 8.730278e-08	ci right 1.921241e-05	k: 1	n:290000
ZNF285   290000 perm   105 sec   (2754 perm/sec)   p_kst 3.448276e-06   p_cons 3.448276e-06   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.229619e-05	k: 0	n:300000
Cons ci ratio: 2.771845e+00	ci left: 8.439269e-08	ci right 1.857200e-05	k: 1	n:300000
KS ci ratio: 2.771845e+00	ci left: 8.439269e-08	ci right 1.857200e-05	k: 1	n:300000
ZNF285   300000 perm   110 sec   (2733 perm/sec)   p_kst 3.333333e-06   p_cons 3.333333e-06   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.189954e-05	k: 0	n:310000
Cons ci ratio: 2.771845e+00	ci left: 8.167035e-08	ci right 1.797291e-05	k: 1	n:310000
KS ci ratio: 2.771845e+00	ci left: 8.167035e-08	ci right 1.797291e-05	k: 1	n:310000
ZNF285   310000 perm   114 sec   (2712 perm/sec)   p_kst 3.225806e-06   p_cons 3.225806e-06   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.152768e-05	k: 0	n:320000
Cons ci ratio: 2.771846e+00	ci left: 7.911815e-08	ci right 1.741126e-05	k: 1	n:320000
KS ci ratio: 2.771846e+00	ci left: 7.911815e-08	ci right 1.741126e-05	k: 1	n:320000
ZNF285   320000 perm   119 sec   (2689 perm/sec)   p_kst 3.125000e-06   p_cons 3.125000e-06   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.117836e-05	k: 0	n:330000
Cons ci ratio: 2.771846e+00	ci left: 7.672063e-08	ci right 1.688365e-05	k: 1	n:330000
KS ci ratio: 2.771846e+00	ci left: 7.672063e-08	ci right 1.688365e-05	k: 1	n:330000
ZNF285   330000 perm   124 sec   (2665 perm/sec)   p_kst 3.030303e-06   p_cons 3.030303e-06   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.084959e-05	k: 0	n:340000
Cons ci ratio: 2.771846e+00	ci left: 7.446414e-08	ci right 1.638708e-05	k: 1	n:340000
KS ci ratio: 2.771846e+00	ci left: 7.446414e-08	ci right 1.638708e-05	k: 1	n:340000
ZNF285   340000 perm   129 sec   (2628 perm/sec)   p_kst 2.941176e-06   p_cons 2.941176e-06   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.053960e-05	k: 0	n:350000
Cons ci ratio: 2.771847e+00	ci left: 7.233659e-08	ci right 1.591888e-05	k: 1	n:350000
KS ci ratio: 2.771847e+00	ci left: 7.233659e-08	ci right 1.591888e-05	k: 1	n:350000
ZNF285   350000 perm   136 sec   (2581 perm/sec)   p_kst 2.857143e-06   p_cons 2.857143e-06   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.024683e-05	k: 0	n:360000
Cons ci ratio: 2.771847e+00	ci left: 7.032724e-08	ci right 1.547669e-05	k: 1	n:360000
KS ci ratio: 2.771847e+00	ci left: 7.032724e-08	ci right 1.547669e-05	k: 1	n:360000
ZNF285   360000 perm   142 sec   (2539 perm/sec)   p_kst 2.777778e-06   p_cons 2.777778e-06   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 9.969895e-06	k: 0	n:370000
Cons ci ratio: 2.771847e+00	ci left: 6.842651e-08	ci right 1.505840e-05	k: 1	n:370000
KS ci ratio: 2.771847e+00	ci left: 6.842651e-08	ci right 1.505840e-05	k: 1	n:370000
ZNF285   370000 perm   147 sec   (2512 perm/sec)   p_kst 2.702703e-06   p_cons 2.702703e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.707530e-06	k: 0	n:380000
Cons ci ratio: 2.771848e+00	ci left: 6.662581e-08	ci right 1.466213e-05	k: 1	n:380000
KS ci ratio: 2.771848e+00	ci left: 6.662581e-08	ci right 1.466213e-05	k: 1	n:380000
ZNF285   380000 perm   153 sec   (2487 perm/sec)   p_kst 2.631579e-06   p_cons 2.631579e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.458621e-06	k: 0	n:390000
Cons ci ratio: 2.771848e+00	ci left: 6.491745e-08	ci right 1.428618e-05	k: 1	n:390000
KS ci ratio: 2.771848e+00	ci left: 6.491745e-08	ci right 1.428618e-05	k: 1	n:390000
ZNF285   390000 perm   158 sec   (2464 perm/sec)   p_kst 2.564103e-06   p_cons 2.564103e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.222156e-06	k: 0	n:400000
Cons ci ratio: 2.771848e+00	ci left: 6.329452e-08	ci right 1.392903e-05	k: 1	n:400000
KS ci ratio: 2.771848e+00	ci left: 6.329452e-08	ci right 1.392903e-05	k: 1	n:400000
ZNF285   400000 perm   164 sec   (2443 perm/sec)   p_kst 2.500000e-06   p_cons 2.500000e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 8.997226e-06	k: 0	n:410000
Cons ci ratio: 2.771848e+00	ci left: 6.175075e-08	ci right 1.358930e-05	k: 1	n:410000
KS ci ratio: 2.771848e+00	ci left: 6.175075e-08	ci right 1.358930e-05	k: 1	n:410000
ZNF285   410000 perm   169 sec   (2422 perm/sec)   p_kst 2.439024e-06   p_cons 2.439024e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.783008e-06	k: 0	n:420000
Cons ci ratio: 2.771849e+00	ci left: 6.028049e-08	ci right 1.326575e-05	k: 1	n:420000
KS ci ratio: 2.771849e+00	ci left: 6.028049e-08	ci right 1.326575e-05	k: 1	n:420000
ZNF285   420000 perm   175 sec   (2402 perm/sec)   p_kst 2.380952e-06   p_cons 2.380952e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.578753e-06	k: 0	n:430000
Cons ci ratio: 2.771849e+00	ci left: 5.887862e-08	ci right 1.295724e-05	k: 1	n:430000
KS ci ratio: 2.771849e+00	ci left: 5.887862e-08	ci right 1.295724e-05	k: 1	n:430000
ZNF285   430000 perm   181 sec   (2381 perm/sec)   p_kst 2.325581e-06   p_cons 2.325581e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.383782e-06	k: 0	n:440000
Cons ci ratio: 2.771849e+00	ci left: 5.754047e-08	ci right 1.266276e-05	k: 1	n:440000
KS ci ratio: 2.771849e+00	ci left: 5.754047e-08	ci right 1.266276e-05	k: 1	n:440000
ZNF285   440000 perm   187 sec   (2359 perm/sec)   p_kst 2.272727e-06   p_cons 2.272727e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.197476e-06	k: 0	n:450000
Cons ci ratio: 2.771849e+00	ci left: 5.626179e-08	ci right 1.238137e-05	k: 1	n:450000
KS ci ratio: 2.771849e+00	ci left: 5.626179e-08	ci right 1.238137e-05	k: 1	n:450000
ZNF285   450000 perm   193 sec   (2336 perm/sec)   p_kst 2.222222e-06   p_cons 2.222222e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.019271e-06	k: 0	n:460000
Cons ci ratio: 2.771850e+00	ci left: 5.503871e-08	ci right 1.211221e-05	k: 1	n:460000
KS ci ratio: 2.771850e+00	ci left: 5.503871e-08	ci right 1.211221e-05	k: 1	n:460000
ZNF285   460000 perm   198 sec   (2318 perm/sec)   p_kst 2.173913e-06   p_cons 2.173913e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.848649e-06	k: 0	n:470000
Cons ci ratio: 2.771850e+00	ci left: 5.386768e-08	ci right 1.185450e-05	k: 1	n:470000
KS ci ratio: 2.771850e+00	ci left: 5.386768e-08	ci right 1.185450e-05	k: 1	n:470000
ZNF285   470000 perm   204 sec   (2300 perm/sec)   p_kst 2.127660e-06   p_cons 2.127660e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.685136e-06	k: 0	n:480000
Cons ci ratio: 2.771850e+00	ci left: 5.274543e-08	ci right 1.160754e-05	k: 1	n:480000
KS ci ratio: 2.771850e+00	ci left: 5.274543e-08	ci right 1.160754e-05	k: 1	n:480000
ZNF285   480000 perm   211 sec   (2280 perm/sec)   p_kst 2.083333e-06   p_cons 2.083333e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.528297e-06	k: 0	n:490000
Cons ci ratio: 2.771850e+00	ci left: 5.166899e-08	ci right 1.137065e-05	k: 1	n:490000
KS ci ratio: 2.771850e+00	ci left: 5.166899e-08	ci right 1.137065e-05	k: 1	n:490000
ZNF285   490000 perm   217 sec   (2253 perm/sec)   p_kst 2.040816e-06   p_cons 2.040816e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.377732e-06	k: 0	n:500000
Cons ci ratio: 2.771850e+00	ci left: 5.063561e-08	ci right 1.114324e-05	k: 1	n:500000
KS ci ratio: 2.771850e+00	ci left: 5.063561e-08	ci right 1.114324e-05	k: 1	n:500000
ZNF285   500000 perm   224 sec   (2233 perm/sec)   p_kst 2.000000e-06   p_cons 2.000000e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.233071e-06	k: 0	n:510000
Cons ci ratio: 2.771850e+00	ci left: 4.964276e-08	ci right 1.092474e-05	k: 1	n:510000
KS ci ratio: 2.771850e+00	ci left: 4.964276e-08	ci right 1.092474e-05	k: 1	n:510000
ZNF285   510000 perm   231 sec   (2207 perm/sec)   p_kst 1.960784e-06   p_cons 1.960784e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.093974e-06	k: 0	n:520000
Cons ci ratio: 2.771851e+00	ci left: 4.868809e-08	ci right 1.071465e-05	k: 1	n:520000
KS ci ratio: 2.771851e+00	ci left: 4.868809e-08	ci right 1.071465e-05	k: 1	n:520000
ZNF285   520000 perm   238 sec   (2182 perm/sec)   p_kst 1.923077e-06   p_cons 1.923077e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.960126e-06	k: 0	n:530000
Cons ci ratio: 2.771851e+00	ci left: 4.776945e-08	ci right 1.051249e-05	k: 1	n:530000
KS ci ratio: 2.771851e+00	ci left: 4.776945e-08	ci right 1.051249e-05	k: 1	n:530000
ZNF285   530000 perm   246 sec   (2157 perm/sec)   p_kst 1.886792e-06   p_cons 1.886792e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.831235e-06	k: 0	n:540000
Cons ci ratio: 2.771851e+00	ci left: 4.688483e-08	ci right 1.031781e-05	k: 1	n:540000
KS ci ratio: 2.771851e+00	ci left: 4.688483e-08	ci right 1.031781e-05	k: 1	n:540000
ZNF285   540000 perm   254 sec   (2130 perm/sec)   p_kst 1.851852e-06   p_cons 1.851852e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.707031e-06	k: 0	n:550000
Cons ci ratio: 2.771851e+00	ci left: 4.603238e-08	ci right 1.013022e-05	k: 1	n:550000
KS ci ratio: 2.771851e+00	ci left: 4.603238e-08	ci right 1.013022e-05	k: 1	n:550000
ZNF285   550000 perm   260 sec   (2114 perm/sec)   p_kst 1.818182e-06   p_cons 1.818182e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.587263e-06	k: 0	n:560000
Cons ci ratio: 2.771851e+00	ci left: 4.521037e-08	ci right 9.949323e-06	k: 1	n:560000
KS ci ratio: 2.771851e+00	ci left: 4.521037e-08	ci right 9.949323e-06	k: 1	n:560000
ZNF285   560000 perm   268 sec   (2090 perm/sec)   p_kst 1.785714e-06   p_cons 1.785714e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.471697e-06	k: 0	n:570000
Cons ci ratio: 2.771851e+00	ci left: 4.441721e-08	ci right 9.774774e-06	k: 1	n:570000
KS ci ratio: 2.771851e+00	ci left: 4.441721e-08	ci right 9.774774e-06	k: 1	n:570000
ZNF285   570000 perm   276 sec   (2065 perm/sec)   p_kst 1.754386e-06   p_cons 1.754386e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.360117e-06	k: 0	n:580000
Cons ci ratio: 2.771851e+00	ci left: 4.365139e-08	ci right 9.606244e-06	k: 1	n:580000
KS ci ratio: 2.771851e+00	ci left: 4.365139e-08	ci right 9.606244e-06	k: 1	n:580000
ZNF285   580000 perm   284 sec   (2046 perm/sec)   p_kst 1.724138e-06   p_cons 1.724138e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.252319e-06	k: 0	n:590000
Cons ci ratio: 2.771852e+00	ci left: 4.291154e-08	ci right 9.443427e-06	k: 1	n:590000
KS ci ratio: 2.771852e+00	ci left: 4.291154e-08	ci right 9.443427e-06	k: 1	n:590000
ZNF285   590000 perm   291 sec   (2030 perm/sec)   p_kst 1.694915e-06   p_cons 1.694915e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.148114e-06	k: 0	n:600000
Cons ci ratio: 2.771852e+00	ci left: 4.219635e-08	ci right 9.286037e-06	k: 1	n:600000
KS ci ratio: 2.771852e+00	ci left: 4.219635e-08	ci right 9.286037e-06	k: 1	n:600000
ZNF285   600000 perm   298 sec   (2011 perm/sec)   p_kst 1.666667e-06   p_cons 1.666667e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 6.047325e-06	k: 0	n:610000
Cons ci ratio: 2.771852e+00	ci left: 4.150460e-08	ci right 9.133807e-06	k: 1	n:610000
KS ci ratio: 2.771852e+00	ci left: 4.150460e-08	ci right 9.133807e-06	k: 1	n:610000
ZNF285   610000 perm   307 sec   (1987 perm/sec)   p_kst 1.639344e-06   p_cons 1.639344e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.949788e-06	k: 0	n:620000
Cons ci ratio: 2.771852e+00	ci left: 4.083517e-08	ci right 8.986488e-06	k: 1	n:620000
KS ci ratio: 2.771852e+00	ci left: 4.083517e-08	ci right 8.986488e-06	k: 1	n:620000
ZNF285   620000 perm   315 sec   (1969 perm/sec)   p_kst 1.612903e-06   p_cons 1.612903e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.855347e-06	k: 0	n:630000
Cons ci ratio: 2.771852e+00	ci left: 4.018700e-08	ci right 8.843846e-06	k: 1	n:630000
KS ci ratio: 2.771852e+00	ci left: 4.018700e-08	ci right 8.843846e-06	k: 1	n:630000
ZNF285   630000 perm   323 sec   (1951 perm/sec)   p_kst 1.587302e-06   p_cons 1.587302e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.763858e-06	k: 0	n:640000
Cons ci ratio: 2.771852e+00	ci left: 3.955907e-08	ci right 8.705662e-06	k: 1	n:640000
KS ci ratio: 2.771852e+00	ci left: 3.955907e-08	ci right 8.705662e-06	k: 1	n:640000
ZNF285   640000 perm   332 sec   (1930 perm/sec)   p_kst 1.562500e-06   p_cons 1.562500e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.675183e-06	k: 0	n:650000
Cons ci ratio: 2.771852e+00	ci left: 3.895047e-08	ci right 8.571729e-06	k: 1	n:650000
KS ci ratio: 2.771852e+00	ci left: 3.895047e-08	ci right 8.571729e-06	k: 1	n:650000
ZNF285   650000 perm   340 sec   (1913 perm/sec)   p_kst 1.538462e-06   p_cons 1.538462e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.589196e-06	k: 0	n:660000
Cons ci ratio: 2.771852e+00	ci left: 3.836031e-08	ci right 8.441855e-06	k: 1	n:660000
KS ci ratio: 2.771852e+00	ci left: 3.836031e-08	ci right 8.441855e-06	k: 1	n:660000
ZNF285   660000 perm   348 sec   (1895 perm/sec)   p_kst 1.515152e-06   p_cons 1.515152e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.505775e-06	k: 0	n:670000
Cons ci ratio: 2.771852e+00	ci left: 3.778777e-08	ci right 8.315857e-06	k: 1	n:670000
KS ci ratio: 2.771852e+00	ci left: 3.778777e-08	ci right 8.315857e-06	k: 1	n:670000
ZNF285   670000 perm   357 sec   (1877 perm/sec)   p_kst 1.492537e-06   p_cons 1.492537e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.424808e-06	k: 0	n:680000
Cons ci ratio: 2.771852e+00	ci left: 3.723207e-08	ci right 8.193566e-06	k: 1	n:680000
KS ci ratio: 2.771852e+00	ci left: 3.723207e-08	ci right 8.193566e-06	k: 1	n:680000
ZNF285   680000 perm   365 sec   (1862 perm/sec)   p_kst 1.470588e-06   p_cons 1.470588e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.346188e-06	k: 0	n:690000
Cons ci ratio: 2.771853e+00	ci left: 3.669247e-08	ci right 8.074819e-06	k: 1	n:690000
KS ci ratio: 2.771853e+00	ci left: 3.669247e-08	ci right 8.074819e-06	k: 1	n:690000
ZNF285   690000 perm   374 sec   (1846 perm/sec)   p_kst 1.449275e-06   p_cons 1.449275e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.269814e-06	k: 0	n:700000
Cons ci ratio: 2.771853e+00	ci left: 3.616830e-08	ci right 7.959465e-06	k: 1	n:700000
KS ci ratio: 2.771853e+00	ci left: 3.616830e-08	ci right 7.959465e-06	k: 1	n:700000
ZNF285   700000 perm   382 sec   (1833 perm/sec)   p_kst 1.428571e-06   p_cons 1.428571e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.195591e-06	k: 0	n:710000
Cons ci ratio: 2.771853e+00	ci left: 3.565888e-08	ci right 7.847360e-06	k: 1	n:710000
KS ci ratio: 2.771853e+00	ci left: 3.565888e-08	ci right 7.847360e-06	k: 1	n:710000
ZNF285   710000 perm   391 sec   (1817 perm/sec)   p_kst 1.408451e-06   p_cons 1.408451e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.123431e-06	k: 0	n:720000
Cons ci ratio: 2.771853e+00	ci left: 3.516362e-08	ci right 7.738369e-06	k: 1	n:720000
KS ci ratio: 2.771853e+00	ci left: 3.516362e-08	ci right 7.738369e-06	k: 1	n:720000
ZNF285   720000 perm   399 sec   (1805 perm/sec)   p_kst 1.388889e-06   p_cons 1.388889e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.053247e-06	k: 0	n:730000
Cons ci ratio: 2.771853e+00	ci left: 3.468193e-08	ci right 7.632364e-06	k: 1	n:730000
KS ci ratio: 2.771853e+00	ci left: 3.468193e-08	ci right 7.632364e-06	k: 1	n:730000
ZNF285   730000 perm   408 sec   (1791 perm/sec)   p_kst 1.369863e-06   p_cons 1.369863e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.984960e-06	k: 0	n:740000
Cons ci ratio: 2.771853e+00	ci left: 3.421325e-08	ci right 7.529225e-06	k: 1	n:740000
KS ci ratio: 2.771853e+00	ci left: 3.421325e-08	ci right 7.529225e-06	k: 1	n:740000
ZNF285   740000 perm   417 sec   (1775 perm/sec)   p_kst 1.351351e-06   p_cons 1.351351e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.918494e-06	k: 0	n:750000
Cons ci ratio: 2.771853e+00	ci left: 3.375708e-08	ci right 7.428835e-06	k: 1	n:750000
KS ci ratio: 2.771853e+00	ci left: 3.375708e-08	ci right 7.428835e-06	k: 1	n:750000
ZNF285   750000 perm   426 sec   (1761 perm/sec)   p_kst 1.333333e-06   p_cons 1.333333e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.853777e-06	k: 0	n:760000
Cons ci ratio: 2.771853e+00	ci left: 3.331290e-08	ci right 7.331088e-06	k: 1	n:760000
KS ci ratio: 2.771853e+00	ci left: 3.331290e-08	ci right 7.331088e-06	k: 1	n:760000
ZNF285   760000 perm   436 sec   (1745 perm/sec)   p_kst 1.315789e-06   p_cons 1.315789e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.790741e-06	k: 0	n:770000
Cons ci ratio: 2.771853e+00	ci left: 3.288027e-08	ci right 7.235879e-06	k: 1	n:770000
KS ci ratio: 2.771853e+00	ci left: 3.288027e-08	ci right 7.235879e-06	k: 1	n:770000
ZNF285   770000 perm   445 sec   (1729 perm/sec)   p_kst 1.298701e-06   p_cons 1.298701e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.729321e-06	k: 0	n:780000
Cons ci ratio: 2.771853e+00	ci left: 3.245873e-08	ci right 7.143112e-06	k: 1	n:780000
KS ci ratio: 2.771853e+00	ci left: 3.245873e-08	ci right 7.143112e-06	k: 1	n:780000
ZNF285   780000 perm   455 sec   (1714 perm/sec)   p_kst 1.282051e-06   p_cons 1.282051e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.669457e-06	k: 0	n:790000
Cons ci ratio: 2.771853e+00	ci left: 3.204786e-08	ci right 7.052693e-06	k: 1	n:790000
KS ci ratio: 2.771853e+00	ci left: 3.204786e-08	ci right 7.052693e-06	k: 1	n:790000
ZNF285   790000 perm   464 sec   (1703 perm/sec)   p_kst 1.265823e-06   p_cons 1.265823e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.611089e-06	k: 0	n:800000
Cons ci ratio: 2.771853e+00	ci left: 3.164726e-08	ci right 6.964534e-06	k: 1	n:800000
KS ci ratio: 2.771853e+00	ci left: 3.164726e-08	ci right 6.964534e-06	k: 1	n:800000
ZNF285   800000 perm   473 sec   (1692 perm/sec)   p_kst 1.250000e-06   p_cons 1.250000e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.554162e-06	k: 0	n:810000
Cons ci ratio: 2.771853e+00	ci left: 3.125655e-08	ci right 6.878553e-06	k: 1	n:810000
KS ci ratio: 2.771853e+00	ci left: 3.125655e-08	ci right 6.878553e-06	k: 1	n:810000
ZNF285   810000 perm   482 sec   (1680 perm/sec)   p_kst 1.234568e-06   p_cons 1.234568e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.498623e-06	k: 0	n:820000
Cons ci ratio: 2.771854e+00	ci left: 3.087538e-08	ci right 6.794668e-06	k: 1	n:820000
KS ci ratio: 2.771854e+00	ci left: 3.087538e-08	ci right 6.794668e-06	k: 1	n:820000
ZNF285   820000 perm   492 sec   (1668 perm/sec)   p_kst 1.219512e-06   p_cons 1.219512e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.444423e-06	k: 0	n:830000
Cons ci ratio: 2.771854e+00	ci left: 3.050338e-08	ci right 6.712805e-06	k: 1	n:830000
KS ci ratio: 2.771854e+00	ci left: 3.050338e-08	ci right 6.712805e-06	k: 1	n:830000
ZNF285   830000 perm   501 sec   (1658 perm/sec)   p_kst 1.204819e-06   p_cons 1.204819e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.391514e-06	k: 0	n:840000
Cons ci ratio: 2.771854e+00	ci left: 3.014025e-08	ci right 6.632891e-06	k: 1	n:840000
KS ci ratio: 2.771854e+00	ci left: 3.014025e-08	ci right 6.632891e-06	k: 1	n:840000
ZNF285   840000 perm   510 sec   (1646 perm/sec)   p_kst 1.190476e-06   p_cons 1.190476e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.339849e-06	k: 0	n:850000
Cons ci ratio: 2.771854e+00	ci left: 2.978566e-08	ci right 6.554857e-06	k: 1	n:850000
KS ci ratio: 2.771854e+00	ci left: 2.978566e-08	ci right 6.554857e-06	k: 1	n:850000
ZNF285   850000 perm   520 sec   (1636 perm/sec)   p_kst 1.176471e-06   p_cons 1.176471e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.289386e-06	k: 0	n:860000
Cons ci ratio: 2.771854e+00	ci left: 2.943931e-08	ci right 6.478638e-06	k: 1	n:860000
KS ci ratio: 2.771854e+00	ci left: 2.943931e-08	ci right 6.478638e-06	k: 1	n:860000
ZNF285   860000 perm   529 sec   (1625 perm/sec)   p_kst 1.162791e-06   p_cons 1.162791e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.240082e-06	k: 0	n:870000
Cons ci ratio: 2.771854e+00	ci left: 2.910093e-08	ci right 6.404171e-06	k: 1	n:870000
KS ci ratio: 2.771854e+00	ci left: 2.910093e-08	ci right 6.404171e-06	k: 1	n:870000
ZNF285   870000 perm   539 sec   (1614 perm/sec)   p_kst 1.149425e-06   p_cons 1.149425e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.191900e-06	k: 0	n:880000
Cons ci ratio: 2.771854e+00	ci left: 2.877024e-08	ci right 6.331396e-06	k: 1	n:880000
KS ci ratio: 2.771854e+00	ci left: 2.877024e-08	ci right 6.331396e-06	k: 1	n:880000
ZNF285   880000 perm   550 sec   (1599 perm/sec)   p_kst 1.136364e-06   p_cons 1.136364e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.144800e-06	k: 0	n:890000
Cons ci ratio: 2.771854e+00	ci left: 2.844697e-08	ci right 6.260257e-06	k: 1	n:890000
KS ci ratio: 2.771854e+00	ci left: 2.844697e-08	ci right 6.260257e-06	k: 1	n:890000
ZNF285   890000 perm   561 sec   (1585 perm/sec)   p_kst 1.123596e-06   p_cons 1.123596e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.098747e-06	k: 0	n:900000
Cons ci ratio: 2.771854e+00	ci left: 2.813090e-08	ci right 6.190699e-06	k: 1	n:900000
KS ci ratio: 2.771854e+00	ci left: 2.813090e-08	ci right 6.190699e-06	k: 1	n:900000
ZNF285   900000 perm   572 sec   (1575 perm/sec)   p_kst 1.111111e-06   p_cons 1.111111e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.053705e-06	k: 0	n:910000
Cons ci ratio: 2.771854e+00	ci left: 2.782177e-08	ci right 6.122670e-06	k: 1	n:910000
KS ci ratio: 2.771854e+00	ci left: 2.782177e-08	ci right 6.122670e-06	k: 1	n:910000
ZNF285   910000 perm   582 sec   (1564 perm/sec)   p_kst 1.098901e-06   p_cons 1.098901e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.009644e-06	k: 0	n:920000
Cons ci ratio: 2.771854e+00	ci left: 2.751936e-08	ci right 6.056119e-06	k: 1	n:920000
KS ci ratio: 2.771854e+00	ci left: 2.751936e-08	ci right 6.056119e-06	k: 1	n:920000
ZNF285   920000 perm   592 sec   (1555 perm/sec)   p_kst 1.086957e-06   p_cons 1.086957e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.966529e-06	k: 0	n:930000
Cons ci ratio: 2.771854e+00	ci left: 2.722345e-08	ci right 5.991000e-06	k: 1	n:930000
KS ci ratio: 2.771854e+00	ci left: 2.722345e-08	ci right 5.991000e-06	k: 1	n:930000
ZNF285   930000 perm   602 sec   (1546 perm/sec)   p_kst 1.075269e-06   p_cons 1.075269e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.924332e-06	k: 0	n:940000
Cons ci ratio: 2.771854e+00	ci left: 2.693384e-08	ci right 5.927266e-06	k: 1	n:940000
KS ci ratio: 2.771854e+00	ci left: 2.693384e-08	ci right 5.927266e-06	k: 1	n:940000
ZNF285   940000 perm   611 sec   (1537 perm/sec)   p_kst 1.063830e-06   p_cons 1.063830e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.883023e-06	k: 0	n:950000
Cons ci ratio: 2.771854e+00	ci left: 2.665032e-08	ci right 5.864874e-06	k: 1	n:950000
KS ci ratio: 2.771854e+00	ci left: 2.665032e-08	ci right 5.864874e-06	k: 1	n:950000
ZNF285   950000 perm   621 sec   (1529 perm/sec)   p_kst 1.052632e-06   p_cons 1.052632e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.842575e-06	k: 0	n:960000
Cons ci ratio: 2.771854e+00	ci left: 2.637272e-08	ci right 5.803781e-06	k: 1	n:960000
KS ci ratio: 2.771854e+00	ci left: 2.637272e-08	ci right 5.803781e-06	k: 1	n:960000
ZNF285   960000 perm   634 sec   (1515 perm/sec)   p_kst 1.041667e-06   p_cons 1.041667e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.802961e-06	k: 0	n:970000
Cons ci ratio: 2.771854e+00	ci left: 2.610083e-08	ci right 5.743949e-06	k: 1	n:970000
KS ci ratio: 2.771854e+00	ci left: 2.610083e-08	ci right 5.743949e-06	k: 1	n:970000
ZNF285   970000 perm   646 sec   (1502 perm/sec)   p_kst 1.030928e-06   p_cons 1.030928e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.764156e-06	k: 0	n:980000
Cons ci ratio: 2.771854e+00	ci left: 2.583450e-08	ci right 5.685337e-06	k: 1	n:980000
KS ci ratio: 2.771854e+00	ci left: 2.583450e-08	ci right 5.685337e-06	k: 1	n:980000
ZNF285   980000 perm   656 sec   (1494 perm/sec)   p_kst 1.020408e-06   p_cons 1.020408e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.726134e-06	k: 0	n:990000
Cons ci ratio: 2.771854e+00	ci left: 2.557354e-08	ci right 5.627910e-06	k: 1	n:990000
KS ci ratio: 2.771854e+00	ci left: 2.557354e-08	ci right 5.627910e-06	k: 1	n:990000
ZNF285   990000 perm   666 sec   (1486 perm/sec)   p_kst 1.010101e-06   p_cons 1.010101e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.688873e-06	k: 0	n:1000000
Cons ci ratio: 2.771854e+00	ci left: 2.531781e-08	ci right 5.571631e-06	k: 1	n:1000000
KS ci ratio: 2.771854e+00	ci left: 2.531781e-08	ci right 5.571631e-06	k: 1	n:1000000
ZNF285   1000000 perm   677 sec   (1477 perm/sec)   p_kst 1.000000e-06   p_cons 1.000000e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.652349e-06	k: 0	n:1010000
Cons ci ratio: 2.771854e+00	ci left: 2.506714e-08	ci right 5.516466e-06	k: 1	n:1010000
KS ci ratio: 2.771854e+00	ci left: 2.506714e-08	ci right 5.516466e-06	k: 1	n:1010000
ZNF285   1010000 perm   688 sec   (1468 perm/sec)   p_kst 9.900990e-07   p_cons 9.900990e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.616542e-06	k: 0	n:1020000
Cons ci ratio: 2.771855e+00	ci left: 2.482138e-08	ci right 5.462383e-06	k: 1	n:1020000
KS ci ratio: 2.771855e+00	ci left: 2.482138e-08	ci right 5.462383e-06	k: 1	n:1020000
ZNF285   1020000 perm   698 sec   (1460 perm/sec)   p_kst 9.803922e-07   p_cons 9.803922e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.581430e-06	k: 0	n:1030000
Cons ci ratio: 2.771855e+00	ci left: 2.458040e-08	ci right 5.409351e-06	k: 1	n:1030000
KS ci ratio: 2.771855e+00	ci left: 2.458040e-08	ci right 5.409351e-06	k: 1	n:1030000
ZNF285   1030000 perm   709 sec   (1452 perm/sec)   p_kst 9.708738e-07   p_cons 9.708738e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.546993e-06	k: 0	n:1040000
Cons ci ratio: 2.771855e+00	ci left: 2.434405e-08	ci right 5.357338e-06	k: 1	n:1040000
KS ci ratio: 2.771855e+00	ci left: 2.434405e-08	ci right 5.357338e-06	k: 1	n:1040000
ZNF285   1040000 perm   720 sec   (1444 perm/sec)   p_kst 9.615385e-07   p_cons 9.615385e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.513212e-06	k: 0	n:1050000
Cons ci ratio: 2.771855e+00	ci left: 2.411220e-08	ci right 5.306315e-06	k: 1	n:1050000
KS ci ratio: 2.771855e+00	ci left: 2.411220e-08	ci right 5.306315e-06	k: 1	n:1050000
ZNF285   1050000 perm   733 sec   (1433 perm/sec)   p_kst 9.523810e-07   p_cons 9.523810e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.480069e-06	k: 0	n:1060000
Cons ci ratio: 2.771855e+00	ci left: 2.388472e-08	ci right 5.256256e-06	k: 1	n:1060000
KS ci ratio: 2.771855e+00	ci left: 2.388472e-08	ci right 5.256256e-06	k: 1	n:1060000
ZNF285   1060000 perm   745 sec   (1423 perm/sec)   p_kst 9.433962e-07   p_cons 9.433962e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.447545e-06	k: 0	n:1070000
Cons ci ratio: 2.771855e+00	ci left: 2.366150e-08	ci right 5.207132e-06	k: 1	n:1070000
KS ci ratio: 2.771855e+00	ci left: 2.366150e-08	ci right 5.207132e-06	k: 1	n:1070000
ZNF285   1070000 perm   756 sec   (1416 perm/sec)   p_kst 9.345794e-07   p_cons 9.345794e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.415623e-06	k: 0	n:1080000
Cons ci ratio: 2.771855e+00	ci left: 2.344241e-08	ci right 5.158918e-06	k: 1	n:1080000
KS ci ratio: 2.771855e+00	ci left: 2.344241e-08	ci right 5.158918e-06	k: 1	n:1080000
ZNF285   1080000 perm   767 sec   (1408 perm/sec)   p_kst 9.259259e-07   p_cons 9.259259e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.384287e-06	k: 0	n:1090000
Cons ci ratio: 2.771855e+00	ci left: 2.322735e-08	ci right 5.111589e-06	k: 1	n:1090000
KS ci ratio: 2.771855e+00	ci left: 2.322735e-08	ci right 5.111589e-06	k: 1	n:1090000
ZNF285   1090000 perm   779 sec   (1399 perm/sec)   p_kst 9.174312e-07   p_cons 9.174312e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.353521e-06	k: 0	n:1100000
Cons ci ratio: 2.771855e+00	ci left: 2.301619e-08	ci right 5.065120e-06	k: 1	n:1100000
KS ci ratio: 2.771855e+00	ci left: 2.301619e-08	ci right 5.065120e-06	k: 1	n:1100000
ZNF285   1100000 perm   791 sec   (1390 perm/sec)   p_kst 9.090909e-07   p_cons 9.090909e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.323309e-06	k: 0	n:1110000
Cons ci ratio: 2.771855e+00	ci left: 2.280884e-08	ci right 5.019488e-06	k: 1	n:1110000
KS ci ratio: 2.771855e+00	ci left: 2.280884e-08	ci right 5.019488e-06	k: 1	n:1110000
ZNF285   1110000 perm   803 sec   (1383 perm/sec)   p_kst 9.009009e-07   p_cons 9.009009e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.293637e-06	k: 0	n:1120000
Cons ci ratio: 2.771855e+00	ci left: 2.260519e-08	ci right 4.974671e-06	k: 1	n:1120000
KS ci ratio: 2.771855e+00	ci left: 2.260519e-08	ci right 4.974671e-06	k: 1	n:1120000
ZNF285   1120000 perm   816 sec   (1373 perm/sec)   p_kst 8.928571e-07   p_cons 8.928571e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.264490e-06	k: 0	n:1130000
Cons ci ratio: 2.771855e+00	ci left: 2.240514e-08	ci right 4.930648e-06	k: 1	n:1130000
KS ci ratio: 2.771855e+00	ci left: 2.240514e-08	ci right 4.930648e-06	k: 1	n:1130000
ZNF285   1130000 perm   827 sec   (1367 perm/sec)   p_kst 8.849558e-07   p_cons 8.849558e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.235854e-06	k: 0	n:1140000
Cons ci ratio: 2.771855e+00	ci left: 2.220860e-08	ci right 4.887397e-06	k: 1	n:1140000
KS ci ratio: 2.771855e+00	ci left: 2.220860e-08	ci right 4.887397e-06	k: 1	n:1140000
ZNF285   1140000 perm   839 sec   (1359 perm/sec)   p_kst 8.771930e-07   p_cons 8.771930e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.207716e-06	k: 0	n:1150000
Cons ci ratio: 2.771855e+00	ci left: 2.201548e-08	ci right 4.844898e-06	k: 1	n:1150000
KS ci ratio: 2.771855e+00	ci left: 2.201548e-08	ci right 4.844898e-06	k: 1	n:1150000
ZNF285   1150000 perm   852 sec   (1350 perm/sec)   p_kst 8.695652e-07   p_cons 8.695652e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.180063e-06	k: 0	n:1160000
Cons ci ratio: 2.771855e+00	ci left: 2.182570e-08	ci right 4.803131e-06	k: 1	n:1160000
KS ci ratio: 2.771855e+00	ci left: 2.182570e-08	ci right 4.803131e-06	k: 1	n:1160000
ZNF285   1160000 perm   866 sec   (1339 perm/sec)   p_kst 8.620690e-07   p_cons 8.620690e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.152883e-06	k: 0	n:1170000
Cons ci ratio: 2.771855e+00	ci left: 2.163915e-08	ci right 4.762079e-06	k: 1	n:1170000
KS ci ratio: 2.771855e+00	ci left: 2.163915e-08	ci right 4.762079e-06	k: 1	n:1170000
ZNF285   1170000 perm   880 sec   (1329 perm/sec)   p_kst 8.547009e-07   p_cons 8.547009e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.126164e-06	k: 0	n:1180000
Cons ci ratio: 2.771855e+00	ci left: 2.145577e-08	ci right 4.721723e-06	k: 1	n:1180000
KS ci ratio: 2.771855e+00	ci left: 2.145577e-08	ci right 4.721723e-06	k: 1	n:1180000
ZNF285   1180000 perm   894 sec   (1320 perm/sec)   p_kst 8.474576e-07   p_cons 8.474576e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.099894e-06	k: 0	n:1190000
Cons ci ratio: 2.771855e+00	ci left: 2.127547e-08	ci right 4.682044e-06	k: 1	n:1190000
KS ci ratio: 2.771855e+00	ci left: 2.127547e-08	ci right 4.682044e-06	k: 1	n:1190000
ZNF285   1190000 perm   906 sec   (1313 perm/sec)   p_kst 8.403361e-07   p_cons 8.403361e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.074061e-06	k: 0	n:1200000
Cons ci ratio: 2.771855e+00	ci left: 2.109817e-08	ci right 4.643027e-06	k: 1	n:1200000
KS ci ratio: 2.771855e+00	ci left: 2.109817e-08	ci right 4.643027e-06	k: 1	n:1200000
ZNF285   1200000 perm   920 sec   (1305 perm/sec)   p_kst 8.333333e-07   p_cons 8.333333e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.048656e-06	k: 0	n:1210000
Cons ci ratio: 2.771855e+00	ci left: 2.092381e-08	ci right 4.604655e-06	k: 1	n:1210000
KS ci ratio: 2.771855e+00	ci left: 2.092381e-08	ci right 4.604655e-06	k: 1	n:1210000
ZNF285   1210000 perm   932 sec   (1299 perm/sec)   p_kst 8.264463e-07   p_cons 8.264463e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.023667e-06	k: 0	n:1220000
Cons ci ratio: 2.771855e+00	ci left: 2.075230e-08	ci right 4.566912e-06	k: 1	n:1220000
KS ci ratio: 2.771855e+00	ci left: 2.075230e-08	ci right 4.566912e-06	k: 1	n:1220000
ZNF285   1220000 perm   944 sec   (1292 perm/sec)   p_kst 8.196721e-07   p_cons 8.196721e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.999084e-06	k: 0	n:1230000
Cons ci ratio: 2.771855e+00	ci left: 2.058358e-08	ci right 4.529783e-06	k: 1	n:1230000
KS ci ratio: 2.771855e+00	ci left: 2.058358e-08	ci right 4.529783e-06	k: 1	n:1230000
ZNF285   1230000 perm   957 sec   (1286 perm/sec)   p_kst 8.130081e-07   p_cons 8.130081e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.974898e-06	k: 0	n:1240000
Cons ci ratio: 2.771855e+00	ci left: 2.041759e-08	ci right 4.493253e-06	k: 1	n:1240000
KS ci ratio: 2.771855e+00	ci left: 2.041759e-08	ci right 4.493253e-06	k: 1	n:1240000
ZNF285   1240000 perm   969 sec   (1280 perm/sec)   p_kst 8.064516e-07   p_cons 8.064516e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.951099e-06	k: 0	n:1250000
Cons ci ratio: 2.771855e+00	ci left: 2.025425e-08	ci right 4.457307e-06	k: 1	n:1250000
KS ci ratio: 2.771855e+00	ci left: 2.025425e-08	ci right 4.457307e-06	k: 1	n:1250000
ZNF285   1250000 perm   982 sec   (1273 perm/sec)   p_kst 8.000000e-07   p_cons 8.000000e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.927678e-06	k: 0	n:1260000
Cons ci ratio: 2.771855e+00	ci left: 2.009350e-08	ci right 4.421931e-06	k: 1	n:1260000
KS ci ratio: 2.771855e+00	ci left: 2.009350e-08	ci right 4.421931e-06	k: 1	n:1260000
ZNF285   1260000 perm   994 sec   (1267 perm/sec)   p_kst 7.936508e-07   p_cons 7.936508e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.904625e-06	k: 0	n:1270000
Cons ci ratio: 2.771855e+00	ci left: 1.993528e-08	ci right 4.387113e-06	k: 1	n:1270000
KS ci ratio: 2.771855e+00	ci left: 1.993528e-08	ci right 4.387113e-06	k: 1	n:1270000
ZNF285   1270000 perm   1008 sec   (1260 perm/sec)   p_kst 7.874016e-07   p_cons 7.874016e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.881933e-06	k: 0	n:1280000
Cons ci ratio: 2.771855e+00	ci left: 1.977954e-08	ci right 4.352839e-06	k: 1	n:1280000
KS ci ratio: 2.771855e+00	ci left: 1.977954e-08	ci right 4.352839e-06	k: 1	n:1280000
ZNF285   1280000 perm   1021 sec   (1253 perm/sec)   p_kst 7.812500e-07   p_cons 7.812500e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.859592e-06	k: 0	n:1290000
Cons ci ratio: 2.771855e+00	ci left: 1.962621e-08	ci right 4.319096e-06	k: 1	n:1290000
KS ci ratio: 2.771855e+00	ci left: 1.962621e-08	ci right 4.319096e-06	k: 1	n:1290000
ZNF285   1290000 perm   1035 sec   (1246 perm/sec)   p_kst 7.751938e-07   p_cons 7.751938e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.837596e-06	k: 0	n:1300000
Cons ci ratio: 2.771855e+00	ci left: 1.947524e-08	ci right 4.285872e-06	k: 1	n:1300000
KS ci ratio: 2.771855e+00	ci left: 1.947524e-08	ci right 4.285872e-06	k: 1	n:1300000
ZNF285   1300000 perm   1048 sec   (1240 perm/sec)   p_kst 7.692308e-07   p_cons 7.692308e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.815935e-06	k: 0	n:1310000
Cons ci ratio: 2.771855e+00	ci left: 1.932657e-08	ci right 4.253155e-06	k: 1	n:1310000
KS ci ratio: 2.771855e+00	ci left: 1.932657e-08	ci right 4.253155e-06	k: 1	n:1310000
ZNF285   1310000 perm   1061 sec   (1235 perm/sec)   p_kst 7.633588e-07   p_cons 7.633588e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.794602e-06	k: 0	n:1320000
Cons ci ratio: 2.771855e+00	ci left: 1.918016e-08	ci right 4.220935e-06	k: 1	n:1320000
KS ci ratio: 2.771855e+00	ci left: 1.918016e-08	ci right 4.220935e-06	k: 1	n:1320000
ZNF285   1320000 perm   1074 sec   (1229 perm/sec)   p_kst 7.575758e-07   p_cons 7.575758e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.773590e-06	k: 0	n:1330000
Cons ci ratio: 2.771855e+00	ci left: 1.903595e-08	ci right 4.189198e-06	k: 1	n:1330000
KS ci ratio: 2.771855e+00	ci left: 1.903595e-08	ci right 4.189198e-06	k: 1	n:1330000
ZNF285   1330000 perm   1088 sec   (1222 perm/sec)   p_kst 7.518797e-07   p_cons 7.518797e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.752891e-06	k: 0	n:1340000
Cons ci ratio: 2.771855e+00	ci left: 1.889389e-08	ci right 4.157936e-06	k: 1	n:1340000
KS ci ratio: 2.771855e+00	ci left: 1.889389e-08	ci right 4.157936e-06	k: 1	n:1340000
ZNF285   1340000 perm   1103 sec   (1215 perm/sec)   p_kst 7.462687e-07   p_cons 7.462687e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.732500e-06	k: 0	n:1350000
Cons ci ratio: 2.263210e+00	ci left: 1.794143e-07	ci right 5.351610e-06	k: 2	n:1350000
KS ci ratio: 2.771856e+00	ci left: 1.875393e-08	ci right 4.127136e-06	k: 1	n:1350000
ZNF285   1350000 perm   1118 sec   (1208 perm/sec)   p_kst 7.407407e-07   p_cons 1.481481e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.712408e-06	k: 0	n:1360000
Cons ci ratio: 2.263210e+00	ci left: 1.780951e-07	ci right 5.312260e-06	k: 2	n:1360000
KS ci ratio: 2.771856e+00	ci left: 1.861604e-08	ci right 4.096790e-06	k: 1	n:1360000
ZNF285   1360000 perm   1132 sec   (1202 perm/sec)   p_kst 7.352941e-07   p_cons 1.470588e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.692609e-06	k: 0	n:1370000
Cons ci ratio: 2.263210e+00	ci left: 1.767951e-07	ci right 5.273485e-06	k: 2	n:1370000
KS ci ratio: 2.771856e+00	ci left: 1.848015e-08	ci right 4.066886e-06	k: 1	n:1370000
ZNF285   1370000 perm   1145 sec   (1196 perm/sec)   p_kst 7.299270e-07   p_cons 1.459854e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.673097e-06	k: 0	n:1380000
Cons ci ratio: 2.263210e+00	ci left: 1.755140e-07	ci right 5.235271e-06	k: 2	n:1380000
KS ci ratio: 2.771856e+00	ci left: 1.834624e-08	ci right 4.037416e-06	k: 1	n:1380000
ZNF285   1380000 perm   1160 sec   (1190 perm/sec)   p_kst 7.246377e-07   p_cons 1.449275e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.653867e-06	k: 0	n:1390000
Cons ci ratio: 2.263210e+00	ci left: 1.742513e-07	ci right 5.197607e-06	k: 2	n:1390000
KS ci ratio: 2.771856e+00	ci left: 1.821425e-08	ci right 4.008370e-06	k: 1	n:1390000
ZNF285   1390000 perm   1175 sec   (1183 perm/sec)   p_kst 7.194245e-07   p_cons 1.438849e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.634910e-06	k: 0	n:1400000
Cons ci ratio: 2.263210e+00	ci left: 1.730067e-07	ci right 5.160482e-06	k: 2	n:1400000
KS ci ratio: 2.771856e+00	ci left: 1.808415e-08	ci right 3.979739e-06	k: 1	n:1400000
ZNF285   1400000 perm   1190 sec   (1177 perm/sec)   p_kst 7.142857e-07   p_cons 1.428571e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.616223e-06	k: 0	n:1410000
Cons ci ratio: 2.263210e+00	ci left: 1.717797e-07	ci right 5.123882e-06	k: 2	n:1410000
KS ci ratio: 2.771856e+00	ci left: 1.795589e-08	ci right 3.951514e-06	k: 1	n:1410000
ZNF285   1410000 perm   1205 sec   (1170 perm/sec)   p_kst 7.092199e-07   p_cons 1.418440e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.597799e-06	k: 0	n:1420000
Cons ci ratio: 2.263210e+00	ci left: 1.705700e-07	ci right 5.087799e-06	k: 2	n:1420000
KS ci ratio: 2.771856e+00	ci left: 1.782944e-08	ci right 3.923686e-06	k: 1	n:1420000
ZNF285   1420000 perm   1221 sec   (1163 perm/sec)   p_kst 7.042254e-07   p_cons 1.408451e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.579633e-06	k: 0	n:1430000
Cons ci ratio: 2.263210e+00	ci left: 1.693772e-07	ci right 5.052220e-06	k: 2	n:1430000
KS ci ratio: 2.771856e+00	ci left: 1.770476e-08	ci right 3.896248e-06	k: 1	n:1430000
ZNF285   1430000 perm   1236 sec   (1157 perm/sec)   p_kst 6.993007e-07   p_cons 1.398601e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.561719e-06	k: 0	n:1440000
Cons ci ratio: 2.263210e+00	ci left: 1.682009e-07	ci right 5.017135e-06	k: 2	n:1440000
KS ci ratio: 2.771856e+00	ci left: 1.758181e-08	ci right 3.869191e-06	k: 1	n:1440000
ZNF285   1440000 perm   1251 sec   (1151 perm/sec)   p_kst 6.944444e-07   p_cons 1.388889e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.544052e-06	k: 0	n:1450000
Cons ci ratio: 2.263210e+00	ci left: 1.670409e-07	ci right 4.982534e-06	k: 2	n:1450000
KS ci ratio: 2.771856e+00	ci left: 1.746056e-08	ci right 3.842507e-06	k: 1	n:1450000
ZNF285   1450000 perm   1266 sec   (1145 perm/sec)   p_kst 6.896552e-07   p_cons 1.379310e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.526627e-06	k: 0	n:1460000
Cons ci ratio: 2.263210e+00	ci left: 1.658968e-07	ci right 4.948407e-06	k: 2	n:1460000
KS ci ratio: 2.771856e+00	ci left: 1.734096e-08	ci right 3.816188e-06	k: 1	n:1460000
ZNF285   1460000 perm   1281 sec   (1140 perm/sec)   p_kst 6.849315e-07   p_cons 1.369863e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.509439e-06	k: 0	n:1470000
Cons ci ratio: 2.263210e+00	ci left: 1.647683e-07	ci right 4.914745e-06	k: 2	n:1470000
KS ci ratio: 2.771856e+00	ci left: 1.722300e-08	ci right 3.790228e-06	k: 1	n:1470000
ZNF285   1470000 perm   1295 sec   (1135 perm/sec)   p_kst 6.802721e-07   p_cons 1.360544e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.492483e-06	k: 0	n:1480000
Cons ci ratio: 2.263210e+00	ci left: 1.636550e-07	ci right 4.881537e-06	k: 2	n:1480000
KS ci ratio: 2.771856e+00	ci left: 1.710663e-08	ci right 3.764618e-06	k: 1	n:1480000
ZNF285   1480000 perm   1310 sec   (1130 perm/sec)   p_kst 6.756757e-07   p_cons 1.351351e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.475755e-06	k: 0	n:1490000
Cons ci ratio: 2.263210e+00	ci left: 1.625566e-07	ci right 4.848775e-06	k: 2	n:1490000
KS ci ratio: 2.771856e+00	ci left: 1.699182e-08	ci right 3.739352e-06	k: 1	n:1490000
ZNF285   1490000 perm   1325 sec   (1125 perm/sec)   p_kst 6.711409e-07   p_cons 1.342282e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.459250e-06	k: 0	n:1500000
Cons ci ratio: 2.263210e+00	ci left: 1.614729e-07	ci right 4.816450e-06	k: 2	n:1500000
KS ci ratio: 2.771856e+00	ci left: 1.687854e-08	ci right 3.714423e-06	k: 1	n:1500000
ZNF285   1500000 perm   1340 sec   (1119 perm/sec)   p_kst 6.666667e-07   p_cons 1.333333e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.442964e-06	k: 0	n:1510000
Cons ci ratio: 2.263210e+00	ci left: 1.604035e-07	ci right 4.784553e-06	k: 2	n:1510000
KS ci ratio: 2.771856e+00	ci left: 1.676676e-08	ci right 3.689824e-06	k: 1	n:1510000
ZNF285   1510000 perm   1355 sec   (1114 perm/sec)   p_kst 6.622517e-07   p_cons 1.324503e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.426891e-06	k: 0	n:1520000
Cons ci ratio: 2.263210e+00	ci left: 1.593482e-07	ci right 4.753076e-06	k: 2	n:1520000
KS ci ratio: 2.771856e+00	ci left: 1.665645e-08	ci right 3.665549e-06	k: 1	n:1520000
ZNF285   1520000 perm   1372 sec   (1108 perm/sec)   p_kst 6.578947e-07   p_cons 1.315789e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.411029e-06	k: 0	n:1530000
Cons ci ratio: 2.263210e+00	ci left: 1.583068e-07	ci right 4.722010e-06	k: 2	n:1530000
KS ci ratio: 2.771856e+00	ci left: 1.654759e-08	ci right 3.641592e-06	k: 1	n:1530000
ZNF285   1530000 perm   1389 sec   (1102 perm/sec)   p_kst 6.535948e-07   p_cons 1.307190e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.395373e-06	k: 0	n:1540000
Cons ci ratio: 2.263210e+00	ci left: 1.572788e-07	ci right 4.691348e-06	k: 2	n:1540000
KS ci ratio: 2.771856e+00	ci left: 1.644014e-08	ci right 3.617945e-06	k: 1	n:1540000
ZNF285   1540000 perm   1405 sec   (1096 perm/sec)   p_kst 6.493506e-07   p_cons 1.298701e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.379919e-06	k: 0	n:1550000
Cons ci ratio: 2.263210e+00	ci left: 1.562641e-07	ci right 4.661081e-06	k: 2	n:1550000
KS ci ratio: 2.771856e+00	ci left: 1.633407e-08	ci right 3.594603e-06	k: 1	n:1550000
ZNF285   1550000 perm   1421 sec   (1091 perm/sec)   p_kst 6.451613e-07   p_cons 1.290323e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.364664e-06	k: 0	n:1560000
Cons ci ratio: 2.263210e+00	ci left: 1.552624e-07	ci right 4.631202e-06	k: 2	n:1560000
KS ci ratio: 2.771856e+00	ci left: 1.622936e-08	ci right 3.571561e-06	k: 1	n:1560000
ZNF285   1560000 perm   1437 sec   (1086 perm/sec)   p_kst 6.410256e-07   p_cons 1.282051e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.349602e-06	k: 0	n:1570000
Cons ci ratio: 2.263210e+00	ci left: 1.542735e-07	ci right 4.601704e-06	k: 2	n:1570000
KS ci ratio: 2.771856e+00	ci left: 1.612599e-08	ci right 3.548812e-06	k: 1	n:1570000
ZNF285   1570000 perm   1452 sec   (1082 perm/sec)   p_kst 6.369427e-07   p_cons 1.273885e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.334731e-06	k: 0	n:1580000
Cons ci ratio: 2.263210e+00	ci left: 1.532970e-07	ci right 4.572580e-06	k: 2	n:1580000
KS ci ratio: 1.600330e+00	ci left: 1.027524e-06	ci right 7.385005e-06	k: 5	n:1580000
ZNF285   1580000 perm   1469 sec   (1076 perm/sec)   p_kst 3.164557e-06   p_cons 1.265823e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.320047e-06	k: 0	n:1590000
Cons ci ratio: 2.263210e+00	ci left: 1.523329e-07	ci right 4.543821e-06	k: 2	n:1590000
KS ci ratio: 1.600330e+00	ci left: 1.021061e-06	ci right 7.338558e-06	k: 5	n:1590000
ZNF285   1590000 perm   1486 sec   (1070 perm/sec)   p_kst 3.144654e-06   p_cons 1.257862e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.305547e-06	k: 0	n:1600000
Cons ci ratio: 2.263210e+00	ci left: 1.513808e-07	ci right 4.515422e-06	k: 2	n:1600000
KS ci ratio: 1.600330e+00	ci left: 1.014680e-06	ci right 7.292692e-06	k: 5	n:1600000
ZNF285   1600000 perm   1502 sec   (1065 perm/sec)   p_kst 3.125000e-06   p_cons 1.250000e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.291227e-06	k: 0	n:1610000
Cons ci ratio: 2.263210e+00	ci left: 1.504406e-07	ci right 4.487376e-06	k: 2	n:1610000
KS ci ratio: 1.600330e+00	ci left: 1.008377e-06	ci right 7.247396e-06	k: 5	n:1610000
ZNF285   1610000 perm   1518 sec   (1061 perm/sec)   p_kst 3.105590e-06   p_cons 1.242236e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.277083e-06	k: 0	n:1620000
Cons ci ratio: 2.263210e+00	ci left: 1.495119e-07	ci right 4.459677e-06	k: 2	n:1620000
KS ci ratio: 1.600330e+00	ci left: 1.002153e-06	ci right 7.202659e-06	k: 5	n:1620000
ZNF285   1620000 perm   1534 sec   (1056 perm/sec)   p_kst 3.086420e-06   p_cons 1.234568e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.263114e-06	k: 0	n:1630000
Cons ci ratio: 2.263210e+00	ci left: 1.485947e-07	ci right 4.432317e-06	k: 2	n:1630000
KS ci ratio: 1.600330e+00	ci left: 9.960046e-07	ci right 7.158471e-06	k: 5	n:1630000
ZNF285   1630000 perm   1550 sec   (1052 perm/sec)   p_kst 3.067485e-06   p_cons 1.226994e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.249314e-06	k: 0	n:1640000
Cons ci ratio: 2.263210e+00	ci left: 1.476886e-07	ci right 4.405290e-06	k: 2	n:1640000
KS ci ratio: 1.600330e+00	ci left: 9.899314e-07	ci right 7.114822e-06	k: 5	n:1640000
ZNF285   1640000 perm   1568 sec   (1046 perm/sec)   p_kst 3.048780e-06   p_cons 1.219512e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.235682e-06	k: 0	n:1650000
Cons ci ratio: 2.263210e+00	ci left: 1.467935e-07	ci right 4.378592e-06	k: 2	n:1650000
KS ci ratio: 1.600330e+00	ci left: 9.839319e-07	ci right 7.071702e-06	k: 5	n:1650000
ZNF285   1650000 perm   1586 sec   (1040 perm/sec)   p_kst 3.030303e-06   p_cons 1.212121e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.222214e-06	k: 0	n:1660000
Cons ci ratio: 2.263210e+00	ci left: 1.459092e-07	ci right 4.352215e-06	k: 2	n:1660000
KS ci ratio: 1.600330e+00	ci left: 9.780045e-07	ci right 7.029102e-06	k: 5	n:1660000
ZNF285   1660000 perm   1603 sec   (1035 perm/sec)   p_kst 3.012048e-06   p_cons 1.204819e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.208907e-06	k: 0	n:1670000
Cons ci ratio: 2.263210e+00	ci left: 1.450355e-07	ci right 4.326154e-06	k: 2	n:1670000
KS ci ratio: 1.600330e+00	ci left: 9.721482e-07	ci right 6.987011e-06	k: 5	n:1670000
ZNF285   1670000 perm   1622 sec   (1030 perm/sec)   p_kst 2.994012e-06   p_cons 1.197605e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.195759e-06	k: 0	n:1680000
Cons ci ratio: 2.263210e+00	ci left: 1.441722e-07	ci right 4.300403e-06	k: 2	n:1680000
KS ci ratio: 1.600330e+00	ci left: 9.663616e-07	ci right 6.945422e-06	k: 5	n:1680000
ZNF285   1680000 perm   1640 sec   (1024 perm/sec)   p_kst 2.976190e-06   p_cons 1.190476e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.182767e-06	k: 0	n:1690000
Cons ci ratio: 2.263210e+00	ci left: 1.433191e-07	ci right 4.274957e-06	k: 2	n:1690000
KS ci ratio: 1.481617e+00	ci left: 1.302897e-06	ci right 7.727483e-06	k: 6	n:1690000
ZNF285   1690000 perm   1658 sec   (1019 perm/sec)   p_kst 3.550296e-06   p_cons 1.183432e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.169927e-06	k: 0	n:1700000
Cons ci ratio: 2.263210e+00	ci left: 1.424761e-07	ci right 4.249810e-06	k: 2	n:1700000
KS ci ratio: 1.481617e+00	ci left: 1.295233e-06	ci right 7.682028e-06	k: 6	n:1700000
ZNF285   1700000 perm   1677 sec   (1014 perm/sec)   p_kst 3.529412e-06   p_cons 1.176471e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.157237e-06	k: 0	n:1710000
Cons ci ratio: 2.263210e+00	ci left: 1.416429e-07	ci right 4.224957e-06	k: 2	n:1710000
KS ci ratio: 1.481617e+00	ci left: 1.287659e-06	ci right 7.637104e-06	k: 6	n:1710000
ZNF285   1710000 perm   1695 sec   (1009 perm/sec)   p_kst 3.508772e-06   p_cons 1.169591e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.144695e-06	k: 0	n:1720000
Cons ci ratio: 2.263210e+00	ci left: 1.408194e-07	ci right 4.200393e-06	k: 2	n:1720000
KS ci ratio: 1.481617e+00	ci left: 1.280172e-06	ci right 7.592702e-06	k: 6	n:1720000
ZNF285   1720000 perm   1713 sec   (1004 perm/sec)   p_kst 3.488372e-06   p_cons 1.162791e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.132298e-06	k: 0	n:1730000
Cons ci ratio: 2.263210e+00	ci left: 1.400054e-07	ci right 4.176114e-06	k: 2	n:1730000
KS ci ratio: 1.481617e+00	ci left: 1.272772e-06	ci right 7.548814e-06	k: 6	n:1730000
ZNF285   1730000 perm   1731 sec   (1000 perm/sec)   p_kst 3.468208e-06   p_cons 1.156069e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.120043e-06	k: 0	n:1740000
Cons ci ratio: 2.263210e+00	ci left: 1.392008e-07	ci right 4.152113e-06	k: 2	n:1740000
KS ci ratio: 1.481617e+00	ci left: 1.265457e-06	ci right 7.505430e-06	k: 6	n:1740000
ZNF285   1740000 perm   1747 sec   (996 perm/sec)   p_kst 3.448276e-06   p_cons 1.149425e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.107929e-06	k: 0	n:1750000
Cons ci ratio: 2.263210e+00	ci left: 1.384053e-07	ci right 4.128387e-06	k: 2	n:1750000
KS ci ratio: 1.481617e+00	ci left: 1.258226e-06	ci right 7.462542e-06	k: 6	n:1750000
ZNF285   1750000 perm   1767 sec   (990 perm/sec)   p_kst 3.428571e-06   p_cons 1.142857e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.095952e-06	k: 0	n:1760000
Cons ci ratio: 2.263210e+00	ci left: 1.376189e-07	ci right 4.104930e-06	k: 2	n:1760000
KS ci ratio: 1.481617e+00	ci left: 1.251077e-06	ci right 7.420141e-06	k: 6	n:1760000
ZNF285   1760000 perm   1787 sec   (985 perm/sec)   p_kst 3.409091e-06   p_cons 1.136364e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.084111e-06	k: 0	n:1770000
Cons ci ratio: 2.263210e+00	ci left: 1.368414e-07	ci right 4.081738e-06	k: 2	n:1770000
KS ci ratio: 1.481617e+00	ci left: 1.244009e-06	ci right 7.378219e-06	k: 6	n:1770000
ZNF285   1770000 perm   1804 sec   (981 perm/sec)   p_kst 3.389831e-06   p_cons 1.129944e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.072402e-06	k: 0	n:1780000
Cons ci ratio: 2.263211e+00	ci left: 1.360727e-07	ci right 4.058807e-06	k: 2	n:1780000
KS ci ratio: 1.481617e+00	ci left: 1.237020e-06	ci right 7.336769e-06	k: 6	n:1780000
ZNF285   1780000 perm   1824 sec   (976 perm/sec)   p_kst 3.370787e-06   p_cons 1.123596e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.060824e-06	k: 0	n:1790000
Cons ci ratio: 2.263211e+00	ci left: 1.353125e-07	ci right 4.036132e-06	k: 2	n:1790000
KS ci ratio: 1.481617e+00	ci left: 1.230109e-06	ci right 7.295781e-06	k: 6	n:1790000
ZNF285   1790000 perm   1841 sec   (972 perm/sec)   p_kst 3.351955e-06   p_cons 1.117318e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.049375e-06	k: 0	n:1800000
Cons ci ratio: 2.263211e+00	ci left: 1.345607e-07	ci right 4.013710e-06	k: 2	n:1800000
KS ci ratio: 1.481617e+00	ci left: 1.223276e-06	ci right 7.255249e-06	k: 6	n:1800000
ZNF285   1800000 perm   1860 sec   (968 perm/sec)   p_kst 3.333333e-06   p_cons 1.111111e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.038053e-06	k: 0	n:1810000
Cons ci ratio: 2.263211e+00	ci left: 1.338173e-07	ci right 3.991534e-06	k: 2	n:1810000
KS ci ratio: 1.481617e+00	ci left: 1.216517e-06	ci right 7.215165e-06	k: 6	n:1810000
ZNF285   1810000 perm   1879 sec   (963 perm/sec)   p_kst 3.314917e-06   p_cons 1.104972e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.026855e-06	k: 0	n:1820000
Cons ci ratio: 2.263211e+00	ci left: 1.330820e-07	ci right 3.969603e-06	k: 2	n:1820000
KS ci ratio: 1.481617e+00	ci left: 1.209833e-06	ci right 7.175521e-06	k: 6	n:1820000
ZNF285   1820000 perm   1897 sec   (959 perm/sec)   p_kst 3.296703e-06   p_cons 1.098901e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.015779e-06	k: 0	n:1830000
Cons ci ratio: 2.263211e+00	ci left: 1.323548e-07	ci right 3.947911e-06	k: 2	n:1830000
KS ci ratio: 1.481617e+00	ci left: 1.203222e-06	ci right 7.136311e-06	k: 6	n:1830000
ZNF285   1830000 perm   1916 sec   (955 perm/sec)   p_kst 3.278689e-06   p_cons 1.092896e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.004824e-06	k: 0	n:1840000
Cons ci ratio: 2.263211e+00	ci left: 1.316355e-07	ci right 3.926455e-06	k: 2	n:1840000
KS ci ratio: 1.481618e+00	ci left: 1.196683e-06	ci right 7.097527e-06	k: 6	n:1840000
ZNF285   1840000 perm   1935 sec   (951 perm/sec)   p_kst 3.260870e-06   p_cons 1.086957e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.993987e-06	k: 0	n:1850000
Cons ci ratio: 2.263211e+00	ci left: 1.309240e-07	ci right 3.905231e-06	k: 2	n:1850000
KS ci ratio: 1.481618e+00	ci left: 1.190214e-06	ci right 7.059162e-06	k: 6	n:1850000
ZNF285   1850000 perm   1955 sec   (946 perm/sec)   p_kst 3.243243e-06   p_cons 1.081081e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.983267e-06	k: 0	n:1860000
Cons ci ratio: 2.263211e+00	ci left: 1.302201e-07	ci right 3.884235e-06	k: 2	n:1860000
KS ci ratio: 1.481618e+00	ci left: 1.183815e-06	ci right 7.021209e-06	k: 6	n:1860000
ZNF285   1860000 perm   1975 sec   (942 perm/sec)   p_kst 3.225806e-06   p_cons 1.075269e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.972661e-06	k: 0	n:1870000
Cons ci ratio: 2.263211e+00	ci left: 1.295237e-07	ci right 3.863464e-06	k: 2	n:1870000
KS ci ratio: 1.481618e+00	ci left: 1.177484e-06	ci right 6.983663e-06	k: 6	n:1870000
ZNF285   1870000 perm   1994 sec   (938 perm/sec)   p_kst 3.208556e-06   p_cons 1.069519e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.962168e-06	k: 0	n:1880000
Cons ci ratio: 2.263211e+00	ci left: 1.288347e-07	ci right 3.842914e-06	k: 2	n:1880000
KS ci ratio: 1.481618e+00	ci left: 1.171221e-06	ci right 6.946516e-06	k: 6	n:1880000
ZNF285   1880000 perm   2013 sec   (934 perm/sec)   p_kst 3.191489e-06   p_cons 1.063830e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.951786e-06	k: 0	n:1890000
Cons ci ratio: 2.263211e+00	ci left: 1.281531e-07	ci right 3.822581e-06	k: 2	n:1890000
KS ci ratio: 1.481618e+00	ci left: 1.165024e-06	ci right 6.909762e-06	k: 6	n:1890000
ZNF285   1890000 perm   2031 sec   (931 perm/sec)   p_kst 3.174603e-06   p_cons 1.058201e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.941514e-06	k: 0	n:1900000
Cons ci ratio: 2.263211e+00	ci left: 1.274786e-07	ci right 3.802462e-06	k: 2	n:1900000
KS ci ratio: 1.481618e+00	ci left: 1.158893e-06	ci right 6.873395e-06	k: 6	n:1900000
ZNF285   1900000 perm   2051 sec   (926 perm/sec)   p_kst 3.157895e-06   p_cons 1.052632e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.931349e-06	k: 0	n:1910000
Cons ci ratio: 2.263211e+00	ci left: 1.268112e-07	ci right 3.782554e-06	k: 2	n:1910000
KS ci ratio: 1.481618e+00	ci left: 1.152825e-06	ci right 6.837408e-06	k: 6	n:1910000
ZNF285   1910000 perm   2071 sec   (922 perm/sec)   p_kst 3.141361e-06   p_cons 1.047120e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.921290e-06	k: 0	n:1920000
Cons ci ratio: 2.263211e+00	ci left: 1.261507e-07	ci right 3.762853e-06	k: 2	n:1920000
KS ci ratio: 1.481618e+00	ci left: 1.146821e-06	ci right 6.801797e-06	k: 6	n:1920000
ZNF285   1920000 perm   2091 sec   (918 perm/sec)   p_kst 3.125000e-06   p_cons 1.041667e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.911335e-06	k: 0	n:1930000
Cons ci ratio: 2.263211e+00	ci left: 1.254971e-07	ci right 3.743356e-06	k: 2	n:1930000
KS ci ratio: 1.481618e+00	ci left: 1.140879e-06	ci right 6.766554e-06	k: 6	n:1930000
ZNF285   1930000 perm   2109 sec   (915 perm/sec)   p_kst 3.108808e-06   p_cons 1.036269e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.901482e-06	k: 0	n:1940000
Cons ci ratio: 2.263211e+00	ci left: 1.248502e-07	ci right 3.724061e-06	k: 2	n:1940000
KS ci ratio: 1.481618e+00	ci left: 1.134998e-06	ci right 6.731675e-06	k: 6	n:1940000
ZNF285   1940000 perm   2129 sec   (911 perm/sec)   p_kst 3.092784e-06   p_cons 1.030928e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.891731e-06	k: 0	n:1950000
Cons ci ratio: 2.263211e+00	ci left: 1.242099e-07	ci right 3.704963e-06	k: 2	n:1950000
KS ci ratio: 1.481618e+00	ci left: 1.129177e-06	ci right 6.697154e-06	k: 6	n:1950000
ZNF285   1950000 perm   2149 sec   (907 perm/sec)   p_kst 3.076923e-06   p_cons 1.025641e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.882080e-06	k: 0	n:1960000
Cons ci ratio: 2.263211e+00	ci left: 1.235762e-07	ci right 3.686060e-06	k: 2	n:1960000
KS ci ratio: 1.481618e+00	ci left: 1.123416e-06	ci right 6.662985e-06	k: 6	n:1960000
ZNF285   1960000 perm   2170 sec   (903 perm/sec)   p_kst 3.061224e-06   p_cons 1.020408e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.872526e-06	k: 0	n:1970000
Cons ci ratio: 2.263211e+00	ci left: 1.229489e-07	ci right 3.667349e-06	k: 2	n:1970000
KS ci ratio: 1.481618e+00	ci left: 1.117714e-06	ci right 6.629163e-06	k: 6	n:1970000
ZNF285   1970000 perm   2190 sec   (900 perm/sec)   p_kst 3.045685e-06   p_cons 1.015228e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.863069e-06	k: 0	n:1980000
Cons ci ratio: 2.263211e+00	ci left: 1.223279e-07	ci right 3.648827e-06	k: 2	n:1980000
KS ci ratio: 1.481618e+00	ci left: 1.112069e-06	ci right 6.595682e-06	k: 6	n:1980000
ZNF285   1980000 perm   2209 sec   (896 perm/sec)   p_kst 3.030303e-06   p_cons 1.010101e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.853707e-06	k: 0	n:1990000
Cons ci ratio: 2.263211e+00	ci left: 1.217132e-07	ci right 3.630492e-06	k: 2	n:1990000
KS ci ratio: 1.481618e+00	ci left: 1.106480e-06	ci right 6.562538e-06	k: 6	n:1990000
ZNF285   1990000 perm   2230 sec   (893 perm/sec)   p_kst 3.015075e-06   p_cons 1.005025e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.844438e-06	k: 0	n:2000000
Cons ci ratio: 2.263211e+00	ci left: 1.211047e-07	ci right 3.612339e-06	k: 2	n:2000000
KS ci ratio: 1.481618e+00	ci left: 1.100948e-06	ci right 6.529725e-06	k: 6	n:2000000
ZNF285   2000000 perm   2249 sec   (889 perm/sec)   p_kst 3.000000e-06   p_cons 1.000000e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.835262e-06	k: 0	n:2010000
Cons ci ratio: 2.263211e+00	ci left: 1.205022e-07	ci right 3.594367e-06	k: 2	n:2010000
KS ci ratio: 1.481618e+00	ci left: 1.095471e-06	ci right 6.497239e-06	k: 6	n:2010000
ZNF285   2010000 perm   2269 sec   (886 perm/sec)   p_kst 2.985075e-06   p_cons 9.950249e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.826176e-06	k: 0	n:2020000
Cons ci ratio: 2.263211e+00	ci left: 1.199056e-07	ci right 3.576573e-06	k: 2	n:2020000
KS ci ratio: 1.481618e+00	ci left: 1.090047e-06	ci right 6.465075e-06	k: 6	n:2020000
ZNF285   2020000 perm   2288 sec   (883 perm/sec)   p_kst 2.970297e-06   p_cons 9.900990e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.817180e-06	k: 0	n:2030000
Cons ci ratio: 2.263211e+00	ci left: 1.193149e-07	ci right 3.558955e-06	k: 2	n:2030000
KS ci ratio: 1.481618e+00	ci left: 1.084678e-06	ci right 6.433227e-06	k: 6	n:2030000
ZNF285   2030000 perm   2310 sec   (879 perm/sec)   p_kst 2.955665e-06   p_cons 9.852217e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.808273e-06	k: 0	n:2040000
Cons ci ratio: 2.263211e+00	ci left: 1.187301e-07	ci right 3.541509e-06	k: 2	n:2040000
KS ci ratio: 1.481618e+00	ci left: 1.079361e-06	ci right 6.401692e-06	k: 6	n:2040000
ZNF285   2040000 perm   2330 sec   (876 perm/sec)   p_kst 2.941176e-06   p_cons 9.803922e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.799452e-06	k: 0	n:2050000
Cons ci ratio: 2.263211e+00	ci left: 1.181509e-07	ci right 3.524233e-06	k: 2	n:2050000
KS ci ratio: 1.481618e+00	ci left: 1.074095e-06	ci right 6.370464e-06	k: 6	n:2050000
ZNF285   2050000 perm   2349 sec   (873 perm/sec)   p_kst 2.926829e-06   p_cons 9.756098e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.790717e-06	k: 0	n:2060000
Cons ci ratio: 2.263211e+00	ci left: 1.175773e-07	ci right 3.507125e-06	k: 2	n:2060000
KS ci ratio: 1.481618e+00	ci left: 1.068881e-06	ci right 6.339540e-06	k: 6	n:2060000
ZNF285   2060000 perm   2369 sec   (870 perm/sec)   p_kst 2.912621e-06   p_cons 9.708738e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.782066e-06	k: 0	n:2070000
Cons ci ratio: 2.263211e+00	ci left: 1.170093e-07	ci right 3.490183e-06	k: 2	n:2070000
KS ci ratio: 1.481618e+00	ci left: 1.063718e-06	ci right 6.308914e-06	k: 6	n:2070000
ZNF285   2070000 perm   2390 sec   (866 perm/sec)   p_kst 2.898551e-06   p_cons 9.661836e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.773498e-06	k: 0	n:2080000
Cons ci ratio: 2.263211e+00	ci left: 1.164468e-07	ci right 3.473403e-06	k: 2	n:2080000
KS ci ratio: 1.481618e+00	ci left: 1.058604e-06	ci right 6.278583e-06	k: 6	n:2080000
ZNF285   2080000 perm   2412 sec   (862 perm/sec)   p_kst 2.884615e-06   p_cons 9.615385e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.765013e-06	k: 0	n:2090000
Cons ci ratio: 2.263211e+00	ci left: 1.158896e-07	ci right 3.456784e-06	k: 2	n:2090000
KS ci ratio: 1.481618e+00	ci left: 1.053539e-06	ci right 6.248542e-06	k: 6	n:2090000
ZNF285   2090000 perm   2433 sec   (859 perm/sec)   p_kst 2.870813e-06   p_cons 9.569378e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.756608e-06	k: 0	n:2100000
Cons ci ratio: 2.263211e+00	ci left: 1.153378e-07	ci right 3.440323e-06	k: 2	n:2100000
KS ci ratio: 1.481618e+00	ci left: 1.048522e-06	ci right 6.218787e-06	k: 6	n:2100000
ZNF285   2100000 perm   2454 sec   (856 perm/sec)   p_kst 2.857143e-06   p_cons 9.523810e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.748283e-06	k: 0	n:2110000
Cons ci ratio: 2.263211e+00	ci left: 1.147911e-07	ci right 3.424018e-06	k: 2	n:2110000
KS ci ratio: 1.481618e+00	ci left: 1.043552e-06	ci right 6.189314e-06	k: 6	n:2110000
ZNF285   2110000 perm   2476 sec   (852 perm/sec)   p_kst 2.843602e-06   p_cons 9.478673e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.740036e-06	k: 0	n:2120000
Cons ci ratio: 2.263211e+00	ci left: 1.142497e-07	ci right 3.407867e-06	k: 2	n:2120000
KS ci ratio: 1.481618e+00	ci left: 1.038630e-06	ci right 6.160119e-06	k: 6	n:2120000
ZNF285   2120000 perm   2499 sec   (848 perm/sec)   p_kst 2.830189e-06   p_cons 9.433962e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.731867e-06	k: 0	n:2130000
Cons ci ratio: 2.263211e+00	ci left: 1.137133e-07	ci right 3.391868e-06	k: 2	n:2130000
KS ci ratio: 1.481618e+00	ci left: 1.033754e-06	ci right 6.131198e-06	k: 6	n:2130000
ZNF285   2130000 perm   2521 sec   (845 perm/sec)   p_kst 2.816901e-06   p_cons 9.389671e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.723774e-06	k: 0	n:2140000
Cons ci ratio: 2.263211e+00	ci left: 1.131819e-07	ci right 3.376018e-06	k: 2	n:2140000
KS ci ratio: 1.481618e+00	ci left: 1.028923e-06	ci right 6.102548e-06	k: 6	n:2140000
ZNF285   2140000 perm   2543 sec   (842 perm/sec)   p_kst 2.803738e-06   p_cons 9.345794e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.715756e-06	k: 0	n:2150000
Cons ci ratio: 2.263211e+00	ci left: 1.126555e-07	ci right 3.360316e-06	k: 2	n:2150000
KS ci ratio: 1.481618e+00	ci left: 1.024138e-06	ci right 6.074164e-06	k: 6	n:2150000
ZNF285   2150000 perm   2565 sec   (838 perm/sec)   p_kst 2.790698e-06   p_cons 9.302326e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.707813e-06	k: 0	n:2160000
Cons ci ratio: 2.263211e+00	ci left: 1.121339e-07	ci right 3.344759e-06	k: 2	n:2160000
KS ci ratio: 1.481618e+00	ci left: 1.019396e-06	ci right 6.046043e-06	k: 6	n:2160000
ZNF285   2160000 perm   2587 sec   (835 perm/sec)   p_kst 2.777778e-06   p_cons 9.259259e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.699943e-06	k: 0	n:2170000
Cons ci ratio: 2.263211e+00	ci left: 1.116172e-07	ci right 3.329345e-06	k: 2	n:2170000
KS ci ratio: 1.481618e+00	ci left: 1.014698e-06	ci right 6.018181e-06	k: 6	n:2170000
ZNF285   2170000 perm   2609 sec   (832 perm/sec)   p_kst 2.764977e-06   p_cons 9.216590e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.692145e-06	k: 0	n:2180000
Cons ci ratio: 2.263211e+00	ci left: 1.111052e-07	ci right 3.314073e-06	k: 2	n:2180000
KS ci ratio: 1.481618e+00	ci left: 1.010044e-06	ci right 5.990575e-06	k: 6	n:2180000
ZNF285   2180000 perm   2632 sec   (828 perm/sec)   p_kst 2.752294e-06   p_cons 9.174312e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.684418e-06	k: 0	n:2190000
Cons ci ratio: 2.263211e+00	ci left: 1.105979e-07	ci right 3.298940e-06	k: 2	n:2190000
KS ci ratio: 1.481618e+00	ci left: 1.005432e-06	ci right 5.963221e-06	k: 6	n:2190000
ZNF285   2190000 perm   2655 sec   (825 perm/sec)   p_kst 2.739726e-06   p_cons 9.132420e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.676762e-06	k: 0	n:2200000
Cons ci ratio: 2.263211e+00	ci left: 1.100951e-07	ci right 3.283945e-06	k: 2	n:2200000
KS ci ratio: 1.481618e+00	ci left: 1.000862e-06	ci right 5.936115e-06	k: 6	n:2200000
ZNF285   2200000 perm   2678 sec   (822 perm/sec)   p_kst 2.727273e-06   p_cons 9.090909e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.669175e-06	k: 0	n:2210000
Cons ci ratio: 2.263211e+00	ci left: 1.095970e-07	ci right 3.269086e-06	k: 2	n:2210000
KS ci ratio: 1.481618e+00	ci left: 9.963329e-07	ci right 5.909255e-06	k: 6	n:2210000
ZNF285   2210000 perm   2700 sec   (818 perm/sec)   p_kst 2.714932e-06   p_cons 9.049774e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.661656e-06	k: 0	n:2220000
Cons ci ratio: 2.263211e+00	ci left: 1.091033e-07	ci right 3.254360e-06	k: 2	n:2220000
KS ci ratio: 1.481618e+00	ci left: 9.918449e-07	ci right 5.882637e-06	k: 6	n:2220000
ZNF285   2220000 perm   2722 sec   (816 perm/sec)   p_kst 2.702703e-06   p_cons 9.009009e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.654205e-06	k: 0	n:2230000
Cons ci ratio: 2.263211e+00	ci left: 1.086140e-07	ci right 3.239766e-06	k: 2	n:2230000
KS ci ratio: 1.481618e+00	ci left: 9.873971e-07	ci right 5.856257e-06	k: 6	n:2230000
ZNF285   2230000 perm   2743 sec   (813 perm/sec)   p_kst 2.690583e-06   p_cons 8.968610e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.646820e-06	k: 0	n:2240000
Cons ci ratio: 2.263211e+00	ci left: 1.081292e-07	ci right 3.225303e-06	k: 2	n:2240000
KS ci ratio: 1.481618e+00	ci left: 9.829891e-07	ci right 5.830113e-06	k: 6	n:2240000
ZNF285   2240000 perm   2766 sec   (810 perm/sec)   p_kst 2.678571e-06   p_cons 8.928571e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.639501e-06	k: 0	n:2250000
Cons ci ratio: 2.263211e+00	ci left: 1.076486e-07	ci right 3.210969e-06	k: 2	n:2250000
KS ci ratio: 1.481618e+00	ci left: 9.786203e-07	ci right 5.804202e-06	k: 6	n:2250000
ZNF285   2250000 perm   2789 sec   (807 perm/sec)   p_kst 2.666667e-06   p_cons 8.888889e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.632246e-06	k: 0	n:2260000
Cons ci ratio: 2.263211e+00	ci left: 1.071723e-07	ci right 3.196761e-06	k: 2	n:2260000
KS ci ratio: 1.481618e+00	ci left: 9.742901e-07	ci right 5.778519e-06	k: 6	n:2260000
ZNF285   2260000 perm   2812 sec   (804 perm/sec)   p_kst 2.654867e-06   p_cons 8.849558e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.625056e-06	k: 0	n:2270000
Cons ci ratio: 2.263211e+00	ci left: 1.067001e-07	ci right 3.182678e-06	k: 2	n:2270000
KS ci ratio: 1.481618e+00	ci left: 9.699981e-07	ci right 5.753063e-06	k: 6	n:2270000
ZNF285   2270000 perm   2835 sec   (801 perm/sec)   p_kst 2.643172e-06   p_cons 8.810573e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.617928e-06	k: 0	n:2280000
Cons ci ratio: 2.263211e+00	ci left: 1.062322e-07	ci right 3.168719e-06	k: 2	n:2280000
KS ci ratio: 1.481618e+00	ci left: 9.657437e-07	ci right 5.727831e-06	k: 6	n:2280000
ZNF285   2280000 perm   2858 sec   (798 perm/sec)   p_kst 2.631579e-06   p_cons 8.771930e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.610863e-06	k: 0	n:2290000
Cons ci ratio: 2.263211e+00	ci left: 1.057683e-07	ci right 3.154882e-06	k: 2	n:2290000
KS ci ratio: 1.481618e+00	ci left: 9.615265e-07	ci right 5.702818e-06	k: 6	n:2290000
ZNF285   2290000 perm   2880 sec   (795 perm/sec)   p_kst 2.620087e-06   p_cons 8.733624e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.603859e-06	k: 0	n:2300000
Cons ci ratio: 2.263211e+00	ci left: 1.053084e-07	ci right 3.141165e-06	k: 2	n:2300000
KS ci ratio: 1.481618e+00	ci left: 9.573459e-07	ci right 5.678023e-06	k: 6	n:2300000
ZNF285   2300000 perm   2901 sec   (793 perm/sec)   p_kst 2.608696e-06   p_cons 8.695652e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.596916e-06	k: 0	n:2310000
Cons ci ratio: 2.263211e+00	ci left: 1.048525e-07	ci right 3.127567e-06	k: 2	n:2310000
KS ci ratio: 1.481618e+00	ci left: 9.532016e-07	ci right 5.653443e-06	k: 6	n:2310000
ZNF285   2310000 perm   2925 sec   (790 perm/sec)   p_kst 2.597403e-06   p_cons 8.658009e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.590033e-06	k: 0	n:2320000
Cons ci ratio: 2.263211e+00	ci left: 1.044006e-07	ci right 3.114086e-06	k: 2	n:2320000
KS ci ratio: 1.481618e+00	ci left: 9.490929e-07	ci right 5.629075e-06	k: 6	n:2320000
ZNF285   2320000 perm   2949 sec   (787 perm/sec)   p_kst 2.586207e-06   p_cons 8.620690e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.583209e-06	k: 0	n:2330000
Cons ci ratio: 2.263211e+00	ci left: 1.039525e-07	ci right 3.100721e-06	k: 2	n:2330000
KS ci ratio: 1.481618e+00	ci left: 9.450196e-07	ci right 5.604916e-06	k: 6	n:2330000
ZNF285   2330000 perm   2975 sec   (783 perm/sec)   p_kst 2.575107e-06   p_cons 8.583691e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.576443e-06	k: 0	n:2340000
Cons ci ratio: 2.263211e+00	ci left: 1.035083e-07	ci right 3.087470e-06	k: 2	n:2340000
KS ci ratio: 1.481618e+00	ci left: 9.409810e-07	ci right 5.580963e-06	k: 6	n:2340000
ZNF285   2340000 perm   2997 sec   (781 perm/sec)   p_kst 2.564103e-06   p_cons 8.547009e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.569735e-06	k: 0	n:2350000
Cons ci ratio: 2.263211e+00	ci left: 1.030678e-07	ci right 3.074332e-06	k: 2	n:2350000
KS ci ratio: 1.481618e+00	ci left: 9.369768e-07	ci right 5.557215e-06	k: 6	n:2350000
ZNF285   2350000 perm   3022 sec   (778 perm/sec)   p_kst 2.553191e-06   p_cons 8.510638e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.563083e-06	k: 0	n:2360000
Cons ci ratio: 2.263211e+00	ci left: 1.026311e-07	ci right 3.061305e-06	k: 2	n:2360000
KS ci ratio: 1.481618e+00	ci left: 9.330066e-07	ci right 5.533667e-06	k: 6	n:2360000
ZNF285   2360000 perm   3048 sec   (774 perm/sec)   p_kst 2.542373e-06   p_cons 8.474576e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.556488e-06	k: 0	n:2370000
Cons ci ratio: 2.263211e+00	ci left: 1.021980e-07	ci right 3.048388e-06	k: 2	n:2370000
KS ci ratio: 1.481618e+00	ci left: 9.290699e-07	ci right 5.510318e-06	k: 6	n:2370000
ZNF285   2370000 perm   3072 sec   (772 perm/sec)   p_kst 2.531646e-06   p_cons 8.438819e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.549948e-06	k: 0	n:2380000
Cons ci ratio: 2.263211e+00	ci left: 1.017686e-07	ci right 3.035580e-06	k: 2	n:2380000
KS ci ratio: 1.481618e+00	ci left: 9.251662e-07	ci right 5.487166e-06	k: 6	n:2380000
ZNF285   2380000 perm   3095 sec   (769 perm/sec)   p_kst 2.521008e-06   p_cons 8.403361e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.543463e-06	k: 0	n:2390000
Cons ci ratio: 2.263211e+00	ci left: 1.013428e-07	ci right 3.022879e-06	k: 2	n:2390000
KS ci ratio: 1.481618e+00	ci left: 9.212952e-07	ci right 5.464207e-06	k: 6	n:2390000
ZNF285   2390000 perm   3120 sec   (766 perm/sec)   p_kst 2.510460e-06   p_cons 8.368201e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.537032e-06	k: 0	n:2400000
Cons ci ratio: 2.263211e+00	ci left: 1.009205e-07	ci right 3.010283e-06	k: 2	n:2400000
KS ci ratio: 1.481618e+00	ci left: 9.174565e-07	ci right 5.441440e-06	k: 6	n:2400000
ZNF285   2400000 perm   3143 sec   (764 perm/sec)   p_kst 2.500000e-06   p_cons 8.333333e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.530654e-06	k: 0	n:2410000
Cons ci ratio: 2.263211e+00	ci left: 1.005018e-07	ci right 2.997792e-06	k: 2	n:2410000
KS ci ratio: 1.481618e+00	ci left: 9.136496e-07	ci right 5.418861e-06	k: 6	n:2410000
ZNF285   2410000 perm   3168 sec   (761 perm/sec)   p_kst 2.489627e-06   p_cons 8.298755e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.524329e-06	k: 0	n:2420000
Cons ci ratio: 2.263211e+00	ci left: 1.000865e-07	ci right 2.985405e-06	k: 2	n:2420000
KS ci ratio: 1.481618e+00	ci left: 9.098742e-07	ci right 5.396469e-06	k: 6	n:2420000
ZNF285   2420000 perm   3193 sec   (758 perm/sec)   p_kst 2.479339e-06   p_cons 8.264463e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.518056e-06	k: 0	n:2430000
Cons ci ratio: 2.263211e+00	ci left: 9.967462e-08	ci right 2.973119e-06	k: 2	n:2430000
KS ci ratio: 1.481618e+00	ci left: 9.061298e-07	ci right 5.374261e-06	k: 6	n:2430000
ZNF285   2430000 perm   3219 sec   (755 perm/sec)   p_kst 2.469136e-06   p_cons 8.230453e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.511835e-06	k: 0	n:2440000
Cons ci ratio: 2.263211e+00	ci left: 9.926611e-08	ci right 2.960934e-06	k: 2	n:2440000
KS ci ratio: 1.481618e+00	ci left: 9.024162e-07	ci right 5.352236e-06	k: 6	n:2440000
ZNF285   2440000 perm   3242 sec   (753 perm/sec)   p_kst 2.459016e-06   p_cons 8.196721e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.505664e-06	k: 0	n:2450000
Cons ci ratio: 2.263211e+00	ci left: 9.886095e-08	ci right 2.948849e-06	k: 2	n:2450000
KS ci ratio: 1.481618e+00	ci left: 8.987329e-07	ci right 5.330390e-06	k: 6	n:2450000
ZNF285   2450000 perm   3268 sec   (750 perm/sec)   p_kst 2.448980e-06   p_cons 8.163265e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.499543e-06	k: 0	n:2460000
Cons ci ratio: 2.263211e+00	ci left: 9.845907e-08	ci right 2.936862e-06	k: 2	n:2460000
KS ci ratio: 1.481618e+00	ci left: 8.950795e-07	ci right 5.308722e-06	k: 6	n:2460000
ZNF285   2460000 perm   3294 sec   (747 perm/sec)   p_kst 2.439024e-06   p_cons 8.130081e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.493472e-06	k: 0	n:2470000
Cons ci ratio: 2.263211e+00	ci left: 9.806045e-08	ci right 2.924972e-06	k: 2	n:2470000
KS ci ratio: 1.481618e+00	ci left: 8.914557e-07	ci right 5.287229e-06	k: 6	n:2470000
ZNF285   2470000 perm   3320 sec   (744 perm/sec)   p_kst 2.429150e-06   p_cons 8.097166e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.487450e-06	k: 0	n:2480000
Cons ci ratio: 2.263211e+00	ci left: 9.766505e-08	ci right 2.913177e-06	k: 2	n:2480000
KS ci ratio: 1.481618e+00	ci left: 8.878611e-07	ci right 5.265909e-06	k: 6	n:2480000
ZNF285   2480000 perm   3343 sec   (742 perm/sec)   p_kst 2.419355e-06   p_cons 8.064516e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.481477e-06	k: 0	n:2490000
Cons ci ratio: 2.263211e+00	ci left: 9.727282e-08	ci right 2.901478e-06	k: 2	n:2490000
KS ci ratio: 1.481618e+00	ci left: 8.842954e-07	ci right 5.244761e-06	k: 6	n:2490000
ZNF285   2490000 perm   3368 sec   (739 perm/sec)   p_kst 2.409639e-06   p_cons 8.032129e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.475551e-06	k: 0	n:2500000
Cons ci ratio: 2.263211e+00	ci left: 9.688373e-08	ci right 2.889872e-06	k: 2	n:2500000
KS ci ratio: 1.481618e+00	ci left: 8.807582e-07	ci right 5.223782e-06	k: 6	n:2500000
ZNF285   2500000 perm   3393 sec   (737 perm/sec)   p_kst 2.400000e-06   p_cons 8.000000e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.469672e-06	k: 0	n:2510000
Cons ci ratio: 2.263211e+00	ci left: 9.649774e-08	ci right 2.878359e-06	k: 2	n:2510000
KS ci ratio: 1.481618e+00	ci left: 8.772492e-07	ci right 5.202970e-06	k: 6	n:2510000
ZNF285   2510000 perm   3420 sec   (734 perm/sec)   p_kst 2.390438e-06   p_cons 7.968127e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.463840e-06	k: 0	n:2520000
Cons ci ratio: 2.263211e+00	ci left: 9.611481e-08	ci right 2.866937e-06	k: 2	n:2520000
KS ci ratio: 1.481618e+00	ci left: 8.737680e-07	ci right 5.182324e-06	k: 6	n:2520000
ZNF285   2520000 perm   3443 sec   (732 perm/sec)   p_kst 2.380952e-06   p_cons 7.936508e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.458054e-06	k: 0	n:2530000
Cons ci ratio: 2.263211e+00	ci left: 9.573491e-08	ci right 2.855605e-06	k: 2	n:2530000
KS ci ratio: 1.481618e+00	ci left: 8.703144e-07	ci right 5.161840e-06	k: 6	n:2530000
ZNF285   2530000 perm   3467 sec   (730 perm/sec)   p_kst 2.371542e-06   p_cons 7.905138e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.452314e-06	k: 0	n:2540000
Cons ci ratio: 2.263211e+00	ci left: 9.535800e-08	ci right 2.844362e-06	k: 2	n:2540000
KS ci ratio: 1.481618e+00	ci left: 8.668880e-07	ci right 5.141518e-06	k: 6	n:2540000
ZNF285   2540000 perm   3493 sec   (727 perm/sec)   p_kst 2.362205e-06   p_cons 7.874016e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.446618e-06	k: 0	n:2550000
Cons ci ratio: 2.263211e+00	ci left: 9.498405e-08	ci right 2.833208e-06	k: 2	n:2550000
KS ci ratio: 1.481618e+00	ci left: 8.634884e-07	ci right 5.121355e-06	k: 6	n:2550000
ZNF285   2550000 perm   3518 sec   (725 perm/sec)   p_kst 2.352941e-06   p_cons 7.843137e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.440968e-06	k: 0	n:2560000
Cons ci ratio: 2.263211e+00	ci left: 9.461301e-08	ci right 2.822141e-06	k: 2	n:2560000
KS ci ratio: 1.481618e+00	ci left: 8.601154e-07	ci right 5.101350e-06	k: 6	n:2560000
ZNF285   2560000 perm   3542 sec   (723 perm/sec)   p_kst 2.343750e-06   p_cons 7.812500e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.435361e-06	k: 0	n:2570000
Cons ci ratio: 2.263211e+00	ci left: 9.424487e-08	ci right 2.811160e-06	k: 2	n:2570000
KS ci ratio: 1.481618e+00	ci left: 8.567687e-07	ci right 5.081500e-06	k: 6	n:2570000
ZNF285   2570000 perm   3569 sec   (720 perm/sec)   p_kst 2.334630e-06   p_cons 7.782101e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.429797e-06	k: 0	n:2580000
Cons ci ratio: 2.263211e+00	ci left: 9.387958e-08	ci right 2.800264e-06	k: 2	n:2580000
KS ci ratio: 1.481618e+00	ci left: 8.534478e-07	ci right 5.061805e-06	k: 6	n:2580000
ZNF285   2580000 perm   3596 sec   (717 perm/sec)   p_kst 2.325581e-06   p_cons 7.751938e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.424277e-06	k: 0	n:2590000
Cons ci ratio: 2.263211e+00	ci left: 9.351711e-08	ci right 2.789452e-06	k: 2	n:2590000
KS ci ratio: 1.481618e+00	ci left: 8.501527e-07	ci right 5.042261e-06	k: 6	n:2590000
ZNF285   2590000 perm   3622 sec   (715 perm/sec)   p_kst 2.316602e-06   p_cons 7.722008e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.418799e-06	k: 0	n:2600000
Cons ci ratio: 2.263211e+00	ci left: 9.315743e-08	ci right 2.778723e-06	k: 2	n:2600000
KS ci ratio: 1.481618e+00	ci left: 8.468829e-07	ci right 5.022868e-06	k: 6	n:2600000
ZNF285   2600000 perm   3650 sec   (712 perm/sec)   p_kst 2.307692e-06   p_cons 7.692308e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.413363e-06	k: 0	n:2610000
Cons ci ratio: 2.263211e+00	ci left: 9.280050e-08	ci right 2.768077e-06	k: 2	n:2610000
KS ci ratio: 1.481618e+00	ci left: 8.436381e-07	ci right 5.003623e-06	k: 6	n:2610000
ZNF285   2610000 perm   3676 sec   (710 perm/sec)   p_kst 2.298851e-06   p_cons 7.662835e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.407968e-06	k: 0	n:2620000
Cons ci ratio: 2.263211e+00	ci left: 9.244630e-08	ci right 2.757512e-06	k: 2	n:2620000
KS ci ratio: 1.481618e+00	ci left: 8.404181e-07	ci right 4.984525e-06	k: 6	n:2620000
ZNF285   2620000 perm   3705 sec   (707 perm/sec)   p_kst 2.290076e-06   p_cons 7.633588e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.402615e-06	k: 0	n:2630000
Cons ci ratio: 2.263211e+00	ci left: 9.209480e-08	ci right 2.747027e-06	k: 2	n:2630000
KS ci ratio: 1.385927e+00	ci left: 1.070101e-06	ci right 5.483899e-06	k: 7	n:2630000
ZNF285   2630000 perm   3732 sec   (705 perm/sec)   p_kst 2.661597e-06   p_cons 7.604563e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.397302e-06	k: 0	n:2640000
Cons ci ratio: 2.263211e+00	ci left: 9.174595e-08	ci right 2.736621e-06	k: 2	n:2640000
KS ci ratio: 1.385927e+00	ci left: 1.066047e-06	ci right 5.463127e-06	k: 7	n:2640000
ZNF285   2640000 perm   3756 sec   (703 perm/sec)   p_kst 2.651515e-06   p_cons 7.575758e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.392029e-06	k: 0	n:2650000
Cons ci ratio: 2.263211e+00	ci left: 9.139974e-08	ci right 2.726295e-06	k: 2	n:2650000
KS ci ratio: 1.385927e+00	ci left: 1.062024e-06	ci right 5.442511e-06	k: 7	n:2650000
ZNF285   2650000 perm   3781 sec   (701 perm/sec)   p_kst 2.641509e-06   p_cons 7.547170e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.386796e-06	k: 0	n:2660000
Cons ci ratio: 2.263211e+00	ci left: 9.105613e-08	ci right 2.716045e-06	k: 2	n:2660000
KS ci ratio: 1.385927e+00	ci left: 1.058032e-06	ci right 5.422051e-06	k: 7	n:2660000
ZNF285   2660000 perm   3807 sec   (699 perm/sec)   p_kst 2.631579e-06   p_cons 7.518797e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.381602e-06	k: 0	n:2670000
Cons ci ratio: 2.263211e+00	ci left: 9.071510e-08	ci right 2.705873e-06	k: 2	n:2670000
KS ci ratio: 1.385927e+00	ci left: 1.054069e-06	ci right 5.401744e-06	k: 7	n:2670000
ZNF285   2670000 perm   3834 sec   (696 perm/sec)   p_kst 2.621723e-06   p_cons 7.490637e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.376447e-06	k: 0	n:2680000
Cons ci ratio: 2.263211e+00	ci left: 9.037661e-08	ci right 2.695776e-06	k: 2	n:2680000
KS ci ratio: 1.385927e+00	ci left: 1.050136e-06	ci right 5.381588e-06	k: 7	n:2680000
ZNF285   2680000 perm   3861 sec   (694 perm/sec)   p_kst 2.611940e-06   p_cons 7.462687e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.371330e-06	k: 0	n:2690000
Cons ci ratio: 2.263211e+00	ci left: 9.004064e-08	ci right 2.685755e-06	k: 2	n:2690000
KS ci ratio: 1.385927e+00	ci left: 1.046232e-06	ci right 5.361582e-06	k: 7	n:2690000
ZNF285   2690000 perm   3887 sec   (692 perm/sec)   p_kst 2.602230e-06   p_cons 7.434944e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.366251e-06	k: 0	n:2700000
Cons ci ratio: 2.263211e+00	ci left: 8.970715e-08	ci right 2.675808e-06	k: 2	n:2700000
KS ci ratio: 1.385927e+00	ci left: 1.042357e-06	ci right 5.341724e-06	k: 7	n:2700000
ZNF285   2700000 perm   3913 sec   (690 perm/sec)   p_kst 2.592593e-06   p_cons 7.407407e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.361209e-06	k: 0	n:2710000
Cons ci ratio: 2.263211e+00	ci left: 8.937613e-08	ci right 2.665934e-06	k: 2	n:2710000
KS ci ratio: 1.385927e+00	ci left: 1.038511e-06	ci right 5.322013e-06	k: 7	n:2710000
ZNF285   2710000 perm   3942 sec   (687 perm/sec)   p_kst 2.583026e-06   p_cons 7.380074e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.356205e-06	k: 0	n:2720000
Cons ci ratio: 2.263211e+00	ci left: 8.904754e-08	ci right 2.656133e-06	k: 2	n:2720000
KS ci ratio: 1.385927e+00	ci left: 1.034693e-06	ci right 5.302447e-06	k: 7	n:2720000
ZNF285   2720000 perm   3967 sec   (686 perm/sec)   p_kst 2.573529e-06   p_cons 7.352941e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.351237e-06	k: 0	n:2730000
Cons ci ratio: 2.263211e+00	ci left: 8.872136e-08	ci right 2.646403e-06	k: 2	n:2730000
KS ci ratio: 1.385927e+00	ci left: 1.030903e-06	ci right 5.283024e-06	k: 7	n:2730000
ZNF285   2730000 perm   3995 sec   (683 perm/sec)   p_kst 2.564103e-06   p_cons 7.326007e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.346305e-06	k: 0	n:2740000
Cons ci ratio: 2.263211e+00	ci left: 8.839756e-08	ci right 2.636745e-06	k: 2	n:2740000
KS ci ratio: 1.385927e+00	ci left: 1.027140e-06	ci right 5.263743e-06	k: 7	n:2740000
ZNF285   2740000 perm   4020 sec   (682 perm/sec)   p_kst 2.554745e-06   p_cons 7.299270e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.341410e-06	k: 0	n:2750000
Cons ci ratio: 2.263211e+00	ci left: 8.807611e-08	ci right 2.627157e-06	k: 2	n:2750000
KS ci ratio: 1.385927e+00	ci left: 1.023405e-06	ci right 5.244602e-06	k: 7	n:2750000
ZNF285   2750000 perm   4046 sec   (680 perm/sec)   p_kst 2.545455e-06   p_cons 7.272727e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.336550e-06	k: 0	n:2760000
Cons ci ratio: 2.263211e+00	ci left: 8.775700e-08	ci right 2.617638e-06	k: 2	n:2760000
KS ci ratio: 1.385927e+00	ci left: 1.019697e-06	ci right 5.225600e-06	k: 7	n:2760000
ZNF285   2760000 perm   4073 sec   (678 perm/sec)   p_kst 2.536232e-06   p_cons 7.246377e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.331725e-06	k: 0	n:2770000
Cons ci ratio: 2.263211e+00	ci left: 8.744018e-08	ci right 2.608188e-06	k: 2	n:2770000
KS ci ratio: 1.385927e+00	ci left: 1.016016e-06	ci right 5.206735e-06	k: 7	n:2770000
ZNF285   2770000 perm   4100 sec   (676 perm/sec)   p_kst 2.527076e-06   p_cons 7.220217e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.326934e-06	k: 0	n:2780000
Cons ci ratio: 2.263211e+00	ci left: 8.712565e-08	ci right 2.598806e-06	k: 2	n:2780000
KS ci ratio: 1.385927e+00	ci left: 1.012361e-06	ci right 5.188006e-06	k: 7	n:2780000
ZNF285   2780000 perm   4127 sec   (674 perm/sec)   p_kst 2.517986e-06   p_cons 7.194245e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.322178e-06	k: 0	n:2790000
Cons ci ratio: 2.263211e+00	ci left: 8.681337e-08	ci right 2.589491e-06	k: 2	n:2790000
KS ci ratio: 1.385927e+00	ci left: 1.008733e-06	ci right 5.169411e-06	k: 7	n:2790000
ZNF285   2790000 perm   4154 sec   (672 perm/sec)   p_kst 2.508961e-06   p_cons 7.168459e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.317456e-06	k: 0	n:2800000
Cons ci ratio: 2.263211e+00	ci left: 8.650333e-08	ci right 2.580243e-06	k: 2	n:2800000
KS ci ratio: 1.385927e+00	ci left: 1.005130e-06	ci right 5.150949e-06	k: 7	n:2800000
ZNF285   2800000 perm   4180 sec   (670 perm/sec)   p_kst 2.500000e-06   p_cons 7.142857e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.312768e-06	k: 0	n:2810000
Cons ci ratio: 2.263211e+00	ci left: 8.619548e-08	ci right 2.571061e-06	k: 2	n:2810000
KS ci ratio: 1.385927e+00	ci left: 1.001553e-06	ci right 5.132618e-06	k: 7	n:2810000
ZNF285   2810000 perm   4207 sec   (668 perm/sec)   p_kst 2.491103e-06   p_cons 7.117438e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.308112e-06	k: 0	n:2820000
Cons ci ratio: 2.263211e+00	ci left: 8.588983e-08	ci right 2.561944e-06	k: 2	n:2820000
KS ci ratio: 1.385927e+00	ci left: 9.980016e-07	ci right 5.114417e-06	k: 7	n:2820000
ZNF285   2820000 perm   4233 sec   (666 perm/sec)   p_kst 2.482270e-06   p_cons 7.092199e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.303490e-06	k: 0	n:2830000
Cons ci ratio: 1.959998e+00	ci left: 2.186121e-07	ci right 3.097973e-06	k: 3	n:2830000
KS ci ratio: 1.385927e+00	ci left: 9.944751e-07	ci right 5.096345e-06	k: 7	n:2830000
ZNF285   2830000 perm   4258 sec   (665 perm/sec)   p_kst 2.473498e-06   p_cons 1.060071e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.298900e-06	k: 0	n:2840000
Cons ci ratio: 1.959998e+00	ci left: 2.178423e-07	ci right 3.087065e-06	k: 3	n:2840000
KS ci ratio: 1.385927e+00	ci left: 9.909735e-07	ci right 5.078400e-06	k: 7	n:2840000
ZNF285   2840000 perm   4286 sec   (663 perm/sec)   p_kst 2.464789e-06   p_cons 1.056338e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.294343e-06	k: 0	n:2850000
Cons ci ratio: 1.959998e+00	ci left: 2.170780e-07	ci right 3.076233e-06	k: 3	n:2850000
KS ci ratio: 1.385927e+00	ci left: 9.874964e-07	ci right 5.060581e-06	k: 7	n:2850000
ZNF285   2850000 perm   4312 sec   (661 perm/sec)   p_kst 2.456140e-06   p_cons 1.052632e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.289817e-06	k: 0	n:2860000
Cons ci ratio: 1.959998e+00	ci left: 2.163190e-07	ci right 3.065477e-06	k: 3	n:2860000
KS ci ratio: 1.385927e+00	ci left: 9.840436e-07	ci right 5.042887e-06	k: 7	n:2860000
ZNF285   2860000 perm   4340 sec   (659 perm/sec)   p_kst 2.447552e-06   p_cons 1.048951e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.285323e-06	k: 0	n:2870000
Cons ci ratio: 1.959998e+00	ci left: 2.155653e-07	ci right 3.054796e-06	k: 3	n:2870000
KS ci ratio: 1.385927e+00	ci left: 9.806148e-07	ci right 5.025316e-06	k: 7	n:2870000
ZNF285   2870000 perm   4369 sec   (657 perm/sec)   p_kst 2.439024e-06   p_cons 1.045296e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.280860e-06	k: 0	n:2880000
Cons ci ratio: 1.959998e+00	ci left: 2.148168e-07	ci right 3.044189e-06	k: 3	n:2880000
KS ci ratio: 1.385927e+00	ci left: 9.772099e-07	ci right 5.007867e-06	k: 7	n:2880000
ZNF285   2880000 perm   4399 sec   (655 perm/sec)   p_kst 2.430556e-06   p_cons 1.041667e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.276428e-06	k: 0	n:2890000
Cons ci ratio: 1.959998e+00	ci left: 2.140735e-07	ci right 3.033655e-06	k: 3	n:2890000
KS ci ratio: 1.385927e+00	ci left: 9.738286e-07	ci right 4.990539e-06	k: 7	n:2890000
ZNF285   2890000 perm   4429 sec   (653 perm/sec)   p_kst 2.422145e-06   p_cons 1.038062e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.272027e-06	k: 0	n:2900000
Cons ci ratio: 1.959998e+00	ci left: 2.133353e-07	ci right 3.023195e-06	k: 3	n:2900000
KS ci ratio: 1.385927e+00	ci left: 9.704706e-07	ci right 4.973330e-06	k: 7	n:2900000
ZNF285   2900000 perm   4455 sec   (651 perm/sec)   p_kst 2.413793e-06   p_cons 1.034483e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.267655e-06	k: 0	n:2910000
Cons ci ratio: 1.959998e+00	ci left: 2.126022e-07	ci right 3.012806e-06	k: 3	n:2910000
KS ci ratio: 1.385927e+00	ci left: 9.671356e-07	ci right 4.956240e-06	k: 7	n:2910000
ZNF285   2910000 perm   4483 sec   (649 perm/sec)   p_kst 2.405498e-06   p_cons 1.030928e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.263314e-06	k: 0	n:2920000
Cons ci ratio: 1.959998e+00	ci left: 2.118741e-07	ci right 3.002488e-06	k: 3	n:2920000
KS ci ratio: 1.385927e+00	ci left: 9.638235e-07	ci right 4.939266e-06	k: 7	n:2920000
ZNF285   2920000 perm   4510 sec   (647 perm/sec)   p_kst 2.397260e-06   p_cons 1.027397e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.259002e-06	k: 0	n:2930000
Cons ci ratio: 1.959998e+00	ci left: 2.111509e-07	ci right 2.992240e-06	k: 3	n:2930000
KS ci ratio: 1.385927e+00	ci left: 9.605340e-07	ci right 4.922409e-06	k: 7	n:2930000
ZNF285   2930000 perm   4538 sec   (646 perm/sec)   p_kst 2.389078e-06   p_cons 1.023891e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.254720e-06	k: 0	n:2940000
Cons ci ratio: 1.959998e+00	ci left: 2.104327e-07	ci right 2.982063e-06	k: 3	n:2940000
KS ci ratio: 1.385927e+00	ci left: 9.572669e-07	ci right 4.905666e-06	k: 7	n:2940000
ZNF285   2940000 perm   4568 sec   (644 perm/sec)   p_kst 2.380952e-06   p_cons 1.020408e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.250467e-06	k: 0	n:2950000
Cons ci ratio: 1.959998e+00	ci left: 2.097194e-07	ci right 2.971954e-06	k: 3	n:2950000
KS ci ratio: 1.385927e+00	ci left: 9.540219e-07	ci right 4.889036e-06	k: 7	n:2950000
ZNF285   2950000 perm   4598 sec   (642 perm/sec)   p_kst 2.372881e-06   p_cons 1.016949e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.246242e-06	k: 0	n:2960000
Cons ci ratio: 1.959998e+00	ci left: 2.090109e-07	ci right 2.961914e-06	k: 3	n:2960000
KS ci ratio: 1.385927e+00	ci left: 9.507988e-07	ci right 4.872519e-06	k: 7	n:2960000
ZNF285   2960000 perm   4627 sec   (640 perm/sec)   p_kst 2.364865e-06   p_cons 1.013514e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.242046e-06	k: 0	n:2970000
Cons ci ratio: 1.959998e+00	ci left: 2.083072e-07	ci right 2.951941e-06	k: 3	n:2970000
KS ci ratio: 1.385927e+00	ci left: 9.475975e-07	ci right 4.856114e-06	k: 7	n:2970000
ZNF285   2970000 perm   4655 sec   (638 perm/sec)   p_kst 2.356902e-06   p_cons 1.010101e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.237878e-06	k: 0	n:2980000
Cons ci ratio: 1.959998e+00	ci left: 2.076081e-07	ci right 2.942035e-06	k: 3	n:2980000
KS ci ratio: 1.385927e+00	ci left: 9.444176e-07	ci right 4.839818e-06	k: 7	n:2980000
ZNF285   2980000 perm   4684 sec   (636 perm/sec)   p_kst 2.348993e-06   p_cons 1.006711e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.233738e-06	k: 0	n:2990000
Cons ci ratio: 1.959998e+00	ci left: 2.069138e-07	ci right 2.932196e-06	k: 3	n:2990000
KS ci ratio: 1.385927e+00	ci left: 9.412590e-07	ci right 4.823631e-06	k: 7	n:2990000
ZNF285   2990000 perm   4712 sec   (635 perm/sec)   p_kst 2.341137e-06   p_cons 1.003344e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.229626e-06	k: 0	n:3000000
Cons ci ratio: 1.959998e+00	ci left: 2.062241e-07	ci right 2.922422e-06	k: 3	n:3000000
KS ci ratio: 1.385927e+00	ci left: 9.381215e-07	ci right 4.807553e-06	k: 7	n:3000000
ZNF285   3000000 perm   4740 sec   (633 perm/sec)   p_kst 2.333333e-06   p_cons 1.000000e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.225541e-06	k: 0	n:3010000
Cons ci ratio: 1.959998e+00	ci left: 2.055390e-07	ci right 2.912713e-06	k: 3	n:3010000
KS ci ratio: 1.385927e+00	ci left: 9.350048e-07	ci right 4.791581e-06	k: 7	n:3010000
ZNF285   3010000 perm   4771 sec   (631 perm/sec)   p_kst 2.325581e-06   p_cons 9.966777e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.221483e-06	k: 0	n:3020000
Cons ci ratio: 1.959998e+00	ci left: 2.048584e-07	ci right 2.903068e-06	k: 3	n:3020000
KS ci ratio: 1.385927e+00	ci left: 9.319088e-07	ci right 4.775714e-06	k: 7	n:3020000
ZNF285   3020000 perm   4800 sec   (629 perm/sec)   p_kst 2.317881e-06   p_cons 9.933775e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.217451e-06	k: 0	n:3030000
Cons ci ratio: 1.959998e+00	ci left: 2.041823e-07	ci right 2.893487e-06	k: 3	n:3030000
KS ci ratio: 1.385927e+00	ci left: 9.288332e-07	ci right 4.759953e-06	k: 7	n:3030000
ZNF285   3030000 perm   4828 sec   (628 perm/sec)   p_kst 2.310231e-06   p_cons 9.900990e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.213446e-06	k: 0	n:3040000
Cons ci ratio: 1.959998e+00	ci left: 2.035106e-07	ci right 2.883969e-06	k: 3	n:3040000
KS ci ratio: 1.385927e+00	ci left: 9.257778e-07	ci right 4.744295e-06	k: 7	n:3040000
ZNF285   3040000 perm   4857 sec   (626 perm/sec)   p_kst 2.302632e-06   p_cons 9.868421e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.209468e-06	k: 0	n:3050000
Cons ci ratio: 1.959998e+00	ci left: 2.028434e-07	ci right 2.874513e-06	k: 3	n:3050000
KS ci ratio: 1.385927e+00	ci left: 9.227425e-07	ci right 4.728740e-06	k: 7	n:3050000
ZNF285   3050000 perm   4887 sec   (624 perm/sec)   p_kst 2.295082e-06   p_cons 9.836066e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.205515e-06	k: 0	n:3060000
Cons ci ratio: 1.959998e+00	ci left: 2.021805e-07	ci right 2.865119e-06	k: 3	n:3060000
KS ci ratio: 1.385927e+00	ci left: 9.197270e-07	ci right 4.713287e-06	k: 7	n:3060000
ZNF285   3060000 perm   4918 sec   (622 perm/sec)   p_kst 2.287582e-06   p_cons 9.803922e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.201589e-06	k: 0	n:3070000
Cons ci ratio: 1.959998e+00	ci left: 2.015219e-07	ci right 2.855787e-06	k: 3	n:3070000
KS ci ratio: 1.385927e+00	ci left: 9.167311e-07	ci right 4.697934e-06	k: 7	n:3070000
ZNF285   3070000 perm   4948 sec   (621 perm/sec)   p_kst 2.280130e-06   p_cons 9.771987e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.197687e-06	k: 0	n:3080000
Cons ci ratio: 1.959998e+00	ci left: 2.008676e-07	ci right 2.846515e-06	k: 3	n:3080000
KS ci ratio: 1.385927e+00	ci left: 9.137547e-07	ci right 4.682681e-06	k: 7	n:3080000
ZNF285   3080000 perm   4978 sec   (619 perm/sec)   p_kst 2.272727e-06   p_cons 9.740260e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.193811e-06	k: 0	n:3090000
Cons ci ratio: 1.959998e+00	ci left: 2.002176e-07	ci right 2.837303e-06	k: 3	n:3090000
KS ci ratio: 1.385927e+00	ci left: 9.107976e-07	ci right 4.667527e-06	k: 7	n:3090000
ZNF285   3090000 perm   5006 sec   (617 perm/sec)   p_kst 2.265372e-06   p_cons 9.708738e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.189960e-06	k: 0	n:3100000
Cons ci ratio: 1.959998e+00	ci left: 1.995717e-07	ci right 2.828150e-06	k: 3	n:3100000
KS ci ratio: 1.385927e+00	ci left: 9.078595e-07	ci right 4.652470e-06	k: 7	n:3100000
ZNF285   3100000 perm   5035 sec   (616 perm/sec)   p_kst 2.258065e-06   p_cons 9.677419e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.186134e-06	k: 0	n:3110000
Cons ci ratio: 1.959998e+00	ci left: 1.989300e-07	ci right 2.819056e-06	k: 3	n:3110000
KS ci ratio: 1.385927e+00	ci left: 9.049404e-07	ci right 4.637511e-06	k: 7	n:3110000
ZNF285   3110000 perm   5065 sec   (614 perm/sec)   p_kst 2.250804e-06   p_cons 9.646302e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.182332e-06	k: 0	n:3120000
Cons ci ratio: 1.959998e+00	ci left: 1.982924e-07	ci right 2.810021e-06	k: 3	n:3120000
KS ci ratio: 1.385927e+00	ci left: 9.020399e-07	ci right 4.622647e-06	k: 7	n:3120000
ZNF285   3120000 perm   5095 sec   (612 perm/sec)   p_kst 2.243590e-06   p_cons 9.615385e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.178555e-06	k: 0	n:3130000
Cons ci ratio: 1.959998e+00	ci left: 1.976589e-07	ci right 2.801043e-06	k: 3	n:3130000
KS ci ratio: 1.385927e+00	ci left: 8.991580e-07	ci right 4.607878e-06	k: 7	n:3130000
ZNF285   3130000 perm   5127 sec   (611 perm/sec)   p_kst 2.236422e-06   p_cons 9.584665e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.174802e-06	k: 0	n:3140000
Cons ci ratio: 1.959998e+00	ci left: 1.970294e-07	ci right 2.792123e-06	k: 3	n:3140000
KS ci ratio: 1.385927e+00	ci left: 8.962944e-07	ci right 4.593203e-06	k: 7	n:3140000
ZNF285   3140000 perm   5156 sec   (609 perm/sec)   p_kst 2.229299e-06   p_cons 9.554140e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.171072e-06	k: 0	n:3150000
Cons ci ratio: 1.959998e+00	ci left: 1.964039e-07	ci right 2.783259e-06	k: 3	n:3150000
KS ci ratio: 1.385927e+00	ci left: 8.934490e-07	ci right 4.578622e-06	k: 7	n:3150000
ZNF285   3150000 perm   5187 sec   (607 perm/sec)   p_kst 2.222222e-06   p_cons 9.523810e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.167366e-06	k: 0	n:3160000
Cons ci ratio: 1.959998e+00	ci left: 1.957824e-07	ci right 2.774451e-06	k: 3	n:3160000
KS ci ratio: 1.385927e+00	ci left: 8.906217e-07	ci right 4.564132e-06	k: 7	n:3160000
ZNF285   3160000 perm   5217 sec   (606 perm/sec)   p_kst 2.215190e-06   p_cons 9.493671e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.163684e-06	k: 0	n:3170000
Cons ci ratio: 1.959998e+00	ci left: 1.951648e-07	ci right 2.765699e-06	k: 3	n:3170000
KS ci ratio: 1.385927e+00	ci left: 8.878121e-07	ci right 4.549735e-06	k: 7	n:3170000
ZNF285   3170000 perm   5246 sec   (604 perm/sec)   p_kst 2.208202e-06   p_cons 9.463722e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.160024e-06	k: 0	n:3180000
Cons ci ratio: 1.959998e+00	ci left: 1.945510e-07	ci right 2.757002e-06	k: 3	n:3180000
KS ci ratio: 1.385927e+00	ci left: 8.850203e-07	ci right 4.535427e-06	k: 7	n:3180000
ZNF285   3180000 perm   5275 sec   (603 perm/sec)   p_kst 2.201258e-06   p_cons 9.433962e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.156388e-06	k: 0	n:3190000
Cons ci ratio: 1.753076e+00	ci left: 3.416507e-07	ci right 3.210526e-06	k: 4	n:3190000
KS ci ratio: 1.385927e+00	ci left: 8.822459e-07	ci right 4.521210e-06	k: 7	n:3190000
ZNF285   3190000 perm   5304 sec   (601 perm/sec)   p_kst 2.194357e-06   p_cons 1.253918e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.152774e-06	k: 0	n:3200000
Cons ci ratio: 1.753076e+00	ci left: 3.405830e-07	ci right 3.200493e-06	k: 4	n:3200000
KS ci ratio: 1.385927e+00	ci left: 8.794889e-07	ci right 4.507081e-06	k: 7	n:3200000
ZNF285   3200000 perm   5337 sec   (600 perm/sec)   p_kst 2.187500e-06   p_cons 1.250000e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.149183e-06	k: 0	n:3210000
Cons ci ratio: 1.753076e+00	ci left: 3.395220e-07	ci right 3.190523e-06	k: 4	n:3210000
KS ci ratio: 1.385927e+00	ci left: 8.767490e-07	ci right 4.493040e-06	k: 7	n:3210000
ZNF285   3210000 perm   5368 sec   (598 perm/sec)   p_kst 2.180685e-06   p_cons 1.246106e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.145614e-06	k: 0	n:3220000
Cons ci ratio: 1.753076e+00	ci left: 3.384676e-07	ci right 3.180615e-06	k: 4	n:3220000
KS ci ratio: 1.385927e+00	ci left: 8.740262e-07	ci right 4.479087e-06	k: 7	n:3220000
ZNF285   3220000 perm   5398 sec   (597 perm/sec)   p_kst 2.173913e-06   p_cons 1.242236e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.142067e-06	k: 0	n:3230000
Cons ci ratio: 1.753076e+00	ci left: 3.374197e-07	ci right 3.170767e-06	k: 4	n:3230000
KS ci ratio: 1.385927e+00	ci left: 8.713203e-07	ci right 4.465219e-06	k: 7	n:3230000
ZNF285   3230000 perm   5428 sec   (595 perm/sec)   p_kst 2.167183e-06   p_cons 1.238390e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.138542e-06	k: 0	n:3240000
Cons ci ratio: 1.753076e+00	ci left: 3.363783e-07	ci right 3.160981e-06	k: 4	n:3240000
KS ci ratio: 1.385927e+00	ci left: 8.686310e-07	ci right 4.451438e-06	k: 7	n:3240000
ZNF285   3240000 perm   5459 sec   (594 perm/sec)   p_kst 2.160494e-06   p_cons 1.234568e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.135039e-06	k: 0	n:3250000
Cons ci ratio: 1.753076e+00	ci left: 3.353433e-07	ci right 3.151255e-06	k: 4	n:3250000
KS ci ratio: 1.385927e+00	ci left: 8.659583e-07	ci right 4.437741e-06	k: 7	n:3250000
ZNF285   3250000 perm   5489 sec   (592 perm/sec)   p_kst 2.153846e-06   p_cons 1.230769e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.131557e-06	k: 0	n:3260000
Cons ci ratio: 1.753076e+00	ci left: 3.343146e-07	ci right 3.141589e-06	k: 4	n:3260000
KS ci ratio: 1.385927e+00	ci left: 8.633020e-07	ci right 4.424129e-06	k: 7	n:3260000
ZNF285   3260000 perm   5522 sec   (590 perm/sec)   p_kst 2.147239e-06   p_cons 1.226994e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.128097e-06	k: 0	n:3270000
Cons ci ratio: 1.753076e+00	ci left: 3.332923e-07	ci right 3.131981e-06	k: 4	n:3270000
KS ci ratio: 1.385927e+00	ci left: 8.606619e-07	ci right 4.410599e-06	k: 7	n:3270000
ZNF285   3270000 perm   5552 sec   (589 perm/sec)   p_kst 2.140673e-06   p_cons 1.223242e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.124658e-06	k: 0	n:3280000
Cons ci ratio: 1.753076e+00	ci left: 3.322761e-07	ci right 3.122433e-06	k: 4	n:3280000
KS ci ratio: 1.385927e+00	ci left: 8.580379e-07	ci right 4.397152e-06	k: 7	n:3280000
ZNF285   3280000 perm   5582 sec   (588 perm/sec)   p_kst 2.134146e-06   p_cons 1.219512e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.121239e-06	k: 0	n:3290000
Cons ci ratio: 1.753076e+00	ci left: 3.312662e-07	ci right 3.112942e-06	k: 4	n:3290000
KS ci ratio: 1.385927e+00	ci left: 8.554299e-07	ci right 4.383787e-06	k: 7	n:3290000
ZNF285   3290000 perm   5615 sec   (586 perm/sec)   p_kst 2.127660e-06   p_cons 1.215805e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.117842e-06	k: 0	n:3300000
Cons ci ratio: 1.753076e+00	ci left: 3.302623e-07	ci right 3.103509e-06	k: 4	n:3300000
KS ci ratio: 1.385927e+00	ci left: 8.528377e-07	ci right 4.370503e-06	k: 7	n:3300000
ZNF285   3300000 perm   5647 sec   (584 perm/sec)   p_kst 2.121212e-06   p_cons 1.212121e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.114464e-06	k: 0	n:3310000
Cons ci ratio: 1.753076e+00	ci left: 3.292646e-07	ci right 3.094133e-06	k: 4	n:3310000
KS ci ratio: 1.385927e+00	ci left: 8.502612e-07	ci right 4.357299e-06	k: 7	n:3310000
ZNF285   3310000 perm   5677 sec   (583 perm/sec)   p_kst 2.114804e-06   p_cons 1.208459e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.111108e-06	k: 0	n:3320000
Cons ci ratio: 1.753076e+00	ci left: 3.282728e-07	ci right 3.084813e-06	k: 4	n:3320000
KS ci ratio: 1.385927e+00	ci left: 8.477001e-07	ci right 4.344174e-06	k: 7	n:3320000
ZNF285   3320000 perm   5709 sec   (582 perm/sec)   p_kst 2.108434e-06   p_cons 1.204819e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.107771e-06	k: 0	n:3330000
Cons ci ratio: 1.753076e+00	ci left: 3.272870e-07	ci right 3.075549e-06	k: 4	n:3330000
KS ci ratio: 1.385927e+00	ci left: 8.451545e-07	ci right 4.331129e-06	k: 7	n:3330000
ZNF285   3330000 perm   5740 sec   (580 perm/sec)   p_kst 2.102102e-06   p_cons 1.201201e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.104454e-06	k: 0	n:3340000
Cons ci ratio: 1.753076e+00	ci left: 3.263071e-07	ci right 3.066341e-06	k: 4	n:3340000
KS ci ratio: 1.385927e+00	ci left: 8.426241e-07	ci right 4.318161e-06	k: 7	n:3340000
ZNF285   3340000 perm   5771 sec   (579 perm/sec)   p_kst 2.095808e-06   p_cons 1.197605e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.101157e-06	k: 0	n:3350000
Cons ci ratio: 1.753076e+00	ci left: 3.253330e-07	ci right 3.057188e-06	k: 4	n:3350000
KS ci ratio: 1.385927e+00	ci left: 8.401088e-07	ci right 4.305271e-06	k: 7	n:3350000
ZNF285   3350000 perm   5804 sec   (577 perm/sec)   p_kst 2.089552e-06   p_cons 1.194030e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.097880e-06	k: 0	n:3360000
Cons ci ratio: 1.753076e+00	ci left: 3.243648e-07	ci right 3.048089e-06	k: 4	n:3360000
KS ci ratio: 1.385927e+00	ci left: 8.376084e-07	ci right 4.292458e-06	k: 7	n:3360000
ZNF285   3360000 perm   5836 sec   (576 perm/sec)   p_kst 2.083333e-06   p_cons 1.190476e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.094622e-06	k: 0	n:3370000
Cons ci ratio: 1.753076e+00	ci left: 3.234023e-07	ci right 3.039044e-06	k: 4	n:3370000
KS ci ratio: 1.385927e+00	ci left: 8.351230e-07	ci right 4.279721e-06	k: 7	n:3370000
ZNF285   3370000 perm   5870 sec   (574 perm/sec)   p_kst 2.077151e-06   p_cons 1.186944e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.091384e-06	k: 0	n:3380000
Cons ci ratio: 1.753076e+00	ci left: 3.224455e-07	ci right 3.030053e-06	k: 4	n:3380000
KS ci ratio: 1.385927e+00	ci left: 8.326522e-07	ci right 4.267059e-06	k: 7	n:3380000
ZNF285   3380000 perm   5901 sec   (573 perm/sec)   p_kst 2.071006e-06   p_cons 1.183432e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.088164e-06	k: 0	n:3390000
Cons ci ratio: 1.753076e+00	ci left: 3.214943e-07	ci right 3.021115e-06	k: 4	n:3390000
KS ci ratio: 1.385927e+00	ci left: 8.301960e-07	ci right 4.254472e-06	k: 7	n:3390000
ZNF285   3390000 perm   5932 sec   (571 perm/sec)   p_kst 2.064897e-06   p_cons 1.179941e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.084964e-06	k: 0	n:3400000
Cons ci ratio: 1.753076e+00	ci left: 3.205487e-07	ci right 3.012229e-06	k: 4	n:3400000
KS ci ratio: 1.385927e+00	ci left: 8.277542e-07	ci right 4.241959e-06	k: 7	n:3400000
ZNF285   3400000 perm   5963 sec   (570 perm/sec)   p_kst 2.058824e-06   p_cons 1.176471e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.081782e-06	k: 0	n:3410000
Cons ci ratio: 1.753076e+00	ci left: 3.196087e-07	ci right 3.003396e-06	k: 4	n:3410000
KS ci ratio: 1.385927e+00	ci left: 8.253268e-07	ci right 4.229519e-06	k: 7	n:3410000
ZNF285   3410000 perm   5998 sec   (568 perm/sec)   p_kst 2.052786e-06   p_cons 1.173021e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.078619e-06	k: 0	n:3420000
Cons ci ratio: 1.753076e+00	ci left: 3.186742e-07	ci right 2.994614e-06	k: 4	n:3420000
KS ci ratio: 1.385927e+00	ci left: 8.229136e-07	ci right 4.217152e-06	k: 7	n:3420000
ZNF285   3420000 perm   6031 sec   (567 perm/sec)   p_kst 2.046784e-06   p_cons 1.169591e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.075474e-06	k: 0	n:3430000
Cons ci ratio: 1.753076e+00	ci left: 3.177451e-07	ci right 2.985883e-06	k: 4	n:3430000
KS ci ratio: 1.385927e+00	ci left: 8.205144e-07	ci right 4.204857e-06	k: 7	n:3430000
ZNF285   3430000 perm   6063 sec   (566 perm/sec)   p_kst 2.040816e-06   p_cons 1.166181e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.072348e-06	k: 0	n:3440000
Cons ci ratio: 1.753076e+00	ci left: 3.168214e-07	ci right 2.977203e-06	k: 4	n:3440000
KS ci ratio: 1.385927e+00	ci left: 8.181292e-07	ci right 4.192634e-06	k: 7	n:3440000
ZNF285   3440000 perm   6095 sec   (564 perm/sec)   p_kst 2.034884e-06   p_cons 1.162791e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.069240e-06	k: 0	n:3450000
Cons ci ratio: 1.753076e+00	ci left: 3.159031e-07	ci right 2.968574e-06	k: 4	n:3450000
KS ci ratio: 1.385927e+00	ci left: 8.157578e-07	ci right 4.180481e-06	k: 7	n:3450000
ZNF285   3450000 perm   6127 sec   (563 perm/sec)   p_kst 2.028986e-06   p_cons 1.159420e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.066150e-06	k: 0	n:3460000
Cons ci ratio: 1.753076e+00	ci left: 3.149901e-07	ci right 2.959994e-06	k: 4	n:3460000
KS ci ratio: 1.385927e+00	ci left: 8.134001e-07	ci right 4.168399e-06	k: 7	n:3460000
ZNF285   3460000 perm   6159 sec   (562 perm/sec)   p_kst 2.023121e-06   p_cons 1.156069e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.063077e-06	k: 0	n:3470000
Cons ci ratio: 1.753076e+00	ci left: 3.140823e-07	ci right 2.951464e-06	k: 4	n:3470000
KS ci ratio: 1.385927e+00	ci left: 8.110560e-07	ci right 4.156386e-06	k: 7	n:3470000
ZNF285   3470000 perm   6191 sec   (560 perm/sec)   p_kst 2.017291e-06   p_cons 1.152738e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.060022e-06	k: 0	n:3480000
Cons ci ratio: 1.753076e+00	ci left: 3.131798e-07	ci right 2.942983e-06	k: 4	n:3480000
KS ci ratio: 1.385927e+00	ci left: 8.087254e-07	ci right 4.144443e-06	k: 7	n:3480000
ZNF285   3480000 perm   6223 sec   (559 perm/sec)   p_kst 2.011494e-06   p_cons 1.149425e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.056985e-06	k: 0	n:3490000
Cons ci ratio: 1.753076e+00	ci left: 3.122824e-07	ci right 2.934550e-06	k: 4	n:3490000
KS ci ratio: 1.385928e+00	ci left: 8.064081e-07	ci right 4.132567e-06	k: 7	n:3490000
ZNF285   3490000 perm   6256 sec   (558 perm/sec)   p_kst 2.005731e-06   p_cons 1.146132e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.053965e-06	k: 0	n:3500000
Cons ci ratio: 1.753076e+00	ci left: 3.113902e-07	ci right 2.926166e-06	k: 4	n:3500000
KS ci ratio: 1.385928e+00	ci left: 8.041041e-07	ci right 4.120760e-06	k: 7	n:3500000
ZNF285   3500000 perm   6288 sec   (557 perm/sec)   p_kst 2.000000e-06   p_cons 1.142857e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.050962e-06	k: 0	n:3510000
Cons ci ratio: 1.753076e+00	ci left: 3.105030e-07	ci right 2.917829e-06	k: 4	n:3510000
KS ci ratio: 1.385928e+00	ci left: 8.018132e-07	ci right 4.109020e-06	k: 7	n:3510000
ZNF285   3510000 perm   6324 sec   (555 perm/sec)   p_kst 1.994302e-06   p_cons 1.139601e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.047977e-06	k: 0	n:3520000
Cons ci ratio: 1.753076e+00	ci left: 3.096209e-07	ci right 2.909540e-06	k: 4	n:3520000
KS ci ratio: 1.385928e+00	ci left: 7.995353e-07	ci right 4.097347e-06	k: 7	n:3520000
ZNF285   3520000 perm   6357 sec   (554 perm/sec)   p_kst 1.988636e-06   p_cons 1.136364e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.045008e-06	k: 0	n:3530000
Cons ci ratio: 1.753076e+00	ci left: 3.087438e-07	ci right 2.901297e-06	k: 4	n:3530000
KS ci ratio: 1.385928e+00	ci left: 7.972703e-07	ci right 4.085739e-06	k: 7	n:3530000
ZNF285   3530000 perm   6392 sec   (552 perm/sec)   p_kst 1.983003e-06   p_cons 1.133144e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.042056e-06	k: 0	n:3540000
Cons ci ratio: 1.753076e+00	ci left: 3.078717e-07	ci right 2.893102e-06	k: 4	n:3540000
KS ci ratio: 1.306665e+00	ci left: 9.756593e-07	ci right 4.452873e-06	k: 8	n:3540000
ZNF285   3540000 perm   6424 sec   (551 perm/sec)   p_kst 2.259887e-06   p_cons 1.129944e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.039120e-06	k: 0	n:3550000
Cons ci ratio: 1.753076e+00	ci left: 3.070044e-07	ci right 2.884952e-06	k: 4	n:3550000
KS ci ratio: 1.306665e+00	ci left: 9.729110e-07	ci right 4.440330e-06	k: 8	n:3550000
ZNF285   3550000 perm   6457 sec   (550 perm/sec)   p_kst 2.253521e-06   p_cons 1.126761e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.036202e-06	k: 0	n:3560000
Cons ci ratio: 1.753076e+00	ci left: 3.061420e-07	ci right 2.876848e-06	k: 4	n:3560000
KS ci ratio: 1.306665e+00	ci left: 9.701781e-07	ci right 4.427857e-06	k: 8	n:3560000
ZNF285   3560000 perm   6490 sec   (549 perm/sec)   p_kst 2.247191e-06   p_cons 1.123596e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.033299e-06	k: 0	n:3570000
Cons ci ratio: 1.753076e+00	ci left: 3.052845e-07	ci right 2.868790e-06	k: 4	n:3570000
KS ci ratio: 1.306665e+00	ci left: 9.674605e-07	ci right 4.415454e-06	k: 8	n:3570000
ZNF285   3570000 perm   6522 sec   (547 perm/sec)   p_kst 2.240896e-06   p_cons 1.120448e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.030413e-06	k: 0	n:3580000
Cons ci ratio: 1.753076e+00	ci left: 3.044317e-07	ci right 2.860776e-06	k: 4	n:3580000
KS ci ratio: 1.306665e+00	ci left: 9.647581e-07	ci right 4.403121e-06	k: 8	n:3580000
ZNF285   3580000 perm   6555 sec   (546 perm/sec)   p_kst 2.234637e-06   p_cons 1.117318e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.027542e-06	k: 0	n:3590000
Cons ci ratio: 1.753076e+00	ci left: 3.035838e-07	ci right 2.852808e-06	k: 4	n:3590000
KS ci ratio: 1.306665e+00	ci left: 9.620707e-07	ci right 4.390856e-06	k: 8	n:3590000
ZNF285   3590000 perm   6588 sec   (545 perm/sec)   p_kst 2.228412e-06   p_cons 1.114206e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.024688e-06	k: 0	n:3600000
Cons ci ratio: 1.753076e+00	ci left: 3.027405e-07	ci right 2.844883e-06	k: 4	n:3600000
KS ci ratio: 1.306665e+00	ci left: 9.593983e-07	ci right 4.378659e-06	k: 8	n:3600000
ZNF285   3600000 perm   6623 sec   (544 perm/sec)   p_kst 2.222222e-06   p_cons 1.111111e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.021850e-06	k: 0	n:3610000
Cons ci ratio: 1.753076e+00	ci left: 3.019018e-07	ci right 2.837003e-06	k: 4	n:3610000
KS ci ratio: 1.306665e+00	ci left: 9.567407e-07	ci right 4.366530e-06	k: 8	n:3610000
ZNF285   3610000 perm   6656 sec   (542 perm/sec)   p_kst 2.216066e-06   p_cons 1.108033e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.019027e-06	k: 0	n:3620000
Cons ci ratio: 1.753076e+00	ci left: 3.010679e-07	ci right 2.829166e-06	k: 4	n:3620000
KS ci ratio: 1.306665e+00	ci left: 9.540978e-07	ci right 4.354467e-06	k: 8	n:3620000
ZNF285   3620000 perm   6690 sec   (541 perm/sec)   p_kst 2.209945e-06   p_cons 1.104972e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.016220e-06	k: 0	n:3630000
Cons ci ratio: 1.753076e+00	ci left: 3.002385e-07	ci right 2.821372e-06	k: 4	n:3630000
KS ci ratio: 1.306665e+00	ci left: 9.514694e-07	ci right 4.342472e-06	k: 8	n:3630000
ZNF285   3630000 perm   6723 sec   (540 perm/sec)   p_kst 2.203857e-06   p_cons 1.101928e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.013428e-06	k: 0	n:3640000
Cons ci ratio: 1.753076e+00	ci left: 2.994136e-07	ci right 2.813621e-06	k: 4	n:3640000
KS ci ratio: 1.306665e+00	ci left: 9.488555e-07	ci right 4.330542e-06	k: 8	n:3640000
ZNF285   3640000 perm   6757 sec   (539 perm/sec)   p_kst 2.197802e-06   p_cons 1.098901e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.010651e-06	k: 0	n:3650000
Cons ci ratio: 1.753076e+00	ci left: 2.985933e-07	ci right 2.805912e-06	k: 4	n:3650000
KS ci ratio: 1.306665e+00	ci left: 9.462559e-07	ci right 4.318677e-06	k: 8	n:3650000
ZNF285   3650000 perm   6791 sec   (537 perm/sec)   p_kst 2.191781e-06   p_cons 1.095890e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.007890e-06	k: 0	n:3660000
Cons ci ratio: 1.753076e+00	ci left: 2.977775e-07	ci right 2.798246e-06	k: 4	n:3660000
KS ci ratio: 1.306665e+00	ci left: 9.436705e-07	ci right 4.306878e-06	k: 8	n:3660000
ZNF285   3660000 perm   6824 sec   (536 perm/sec)   p_kst 2.185792e-06   p_cons 1.092896e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.005144e-06	k: 0	n:3670000
Cons ci ratio: 1.753076e+00	ci left: 2.969661e-07	ci right 2.790621e-06	k: 4	n:3670000
KS ci ratio: 1.306665e+00	ci left: 9.410991e-07	ci right 4.295142e-06	k: 8	n:3670000
ZNF285   3670000 perm   6858 sec   (535 perm/sec)   p_kst 2.179837e-06   p_cons 1.089918e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.002412e-06	k: 0	n:3680000
Cons ci ratio: 1.753076e+00	ci left: 2.961591e-07	ci right 2.783038e-06	k: 4	n:3680000
KS ci ratio: 1.306665e+00	ci left: 9.385418e-07	ci right 4.283471e-06	k: 8	n:3680000
ZNF285   3680000 perm   6892 sec   (534 perm/sec)   p_kst 2.173913e-06   p_cons 1.086957e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.996958e-07	k: 0	n:3690000
Cons ci ratio: 1.753076e+00	ci left: 2.953565e-07	ci right 2.775496e-06	k: 4	n:3690000
KS ci ratio: 1.306665e+00	ci left: 9.359983e-07	ci right 4.271863e-06	k: 8	n:3690000
ZNF285   3690000 perm   6926 sec   (533 perm/sec)   p_kst 2.168022e-06   p_cons 1.084011e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.969940e-07	k: 0	n:3700000
Cons ci ratio: 1.753076e+00	ci left: 2.945583e-07	ci right 2.767995e-06	k: 4	n:3700000
KS ci ratio: 1.306665e+00	ci left: 9.334686e-07	ci right 4.260317e-06	k: 8	n:3700000
ZNF285   3700000 perm   6960 sec   (532 perm/sec)   p_kst 2.162162e-06   p_cons 1.081081e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.943066e-07	k: 0	n:3710000
Cons ci ratio: 1.753076e+00	ci left: 2.937643e-07	ci right 2.760534e-06	k: 4	n:3710000
KS ci ratio: 1.306665e+00	ci left: 9.309525e-07	ci right 4.248834e-06	k: 8	n:3710000
ZNF285   3710000 perm   6993 sec   (531 perm/sec)   p_kst 2.156334e-06   p_cons 1.078167e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.916338e-07	k: 0	n:3720000
Cons ci ratio: 1.753076e+00	ci left: 2.929746e-07	ci right 2.753113e-06	k: 4	n:3720000
KS ci ratio: 1.306665e+00	ci left: 9.284500e-07	ci right 4.237412e-06	k: 8	n:3720000
ZNF285   3720000 perm   7026 sec   (529 perm/sec)   p_kst 2.150538e-06   p_cons 1.075269e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.889752e-07	k: 0	n:3730000
Cons ci ratio: 1.753076e+00	ci left: 2.921892e-07	ci right 2.745732e-06	k: 4	n:3730000
KS ci ratio: 1.306665e+00	ci left: 9.259608e-07	ci right 4.226052e-06	k: 8	n:3730000
ZNF285   3730000 perm   7062 sec   (528 perm/sec)   p_kst 2.144772e-06   p_cons 1.072386e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.863309e-07	k: 0	n:3740000
Cons ci ratio: 1.753076e+00	ci left: 2.914079e-07	ci right 2.738390e-06	k: 4	n:3740000
KS ci ratio: 1.306665e+00	ci left: 9.234850e-07	ci right 4.214752e-06	k: 8	n:3740000
ZNF285   3740000 perm   7096 sec   (527 perm/sec)   p_kst 2.139037e-06   p_cons 1.069519e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.837007e-07	k: 0	n:3750000
Cons ci ratio: 1.753076e+00	ci left: 2.906308e-07	ci right 2.731088e-06	k: 4	n:3750000
KS ci ratio: 1.306665e+00	ci left: 9.210223e-07	ci right 4.203513e-06	k: 8	n:3750000
ZNF285   3750000 perm   7131 sec   (526 perm/sec)   p_kst 2.133333e-06   p_cons 1.066667e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.810845e-07	k: 0	n:3760000
Cons ci ratio: 1.753076e+00	ci left: 2.898579e-07	ci right 2.723825e-06	k: 4	n:3760000
KS ci ratio: 1.306665e+00	ci left: 9.185728e-07	ci right 4.192333e-06	k: 8	n:3760000
ZNF285   3760000 perm   7166 sec   (525 perm/sec)   p_kst 2.127660e-06   p_cons 1.063830e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.784821e-07	k: 0	n:3770000
Cons ci ratio: 1.753076e+00	ci left: 2.890890e-07	ci right 2.716600e-06	k: 4	n:3770000
KS ci ratio: 1.306665e+00	ci left: 9.161363e-07	ci right 4.181213e-06	k: 8	n:3770000
ZNF285   3770000 perm   7200 sec   (524 perm/sec)   p_kst 2.122016e-06   p_cons 1.061008e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.758936e-07	k: 0	n:3780000
Cons ci ratio: 1.753076e+00	ci left: 2.883242e-07	ci right 2.709413e-06	k: 4	n:3780000
KS ci ratio: 1.306665e+00	ci left: 9.137126e-07	ci right 4.170152e-06	k: 8	n:3780000
ZNF285   3780000 perm   7234 sec   (523 perm/sec)   p_kst 2.116402e-06   p_cons 1.058201e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.733186e-07	k: 0	n:3790000
Cons ci ratio: 1.753076e+00	ci left: 2.875635e-07	ci right 2.702264e-06	k: 4	n:3790000
KS ci ratio: 1.306665e+00	ci left: 9.113018e-07	ci right 4.159149e-06	k: 8	n:3790000
ZNF285   3790000 perm   7269 sec   (521 perm/sec)   p_kst 2.110818e-06   p_cons 1.055409e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.707573e-07	k: 0	n:3800000
Cons ci ratio: 1.753076e+00	ci left: 2.868068e-07	ci right 2.695153e-06	k: 4	n:3800000
KS ci ratio: 1.306665e+00	ci left: 9.089036e-07	ci right 4.148203e-06	k: 8	n:3800000
ZNF285   3800000 perm   7304 sec   (520 perm/sec)   p_kst 2.105263e-06   p_cons 1.052632e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.682094e-07	k: 0	n:3810000
Cons ci ratio: 1.753076e+00	ci left: 2.860540e-07	ci right 2.688079e-06	k: 4	n:3810000
KS ci ratio: 1.306665e+00	ci left: 9.065181e-07	ci right 4.137316e-06	k: 8	n:3810000
ZNF285   3810000 perm   7338 sec   (519 perm/sec)   p_kst 2.099738e-06   p_cons 1.049869e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.656748e-07	k: 0	n:3820000
Cons ci ratio: 1.753076e+00	ci left: 2.853051e-07	ci right 2.681042e-06	k: 4	n:3820000
KS ci ratio: 1.306665e+00	ci left: 9.041450e-07	ci right 4.126485e-06	k: 8	n:3820000
ZNF285   3820000 perm   7375 sec   (518 perm/sec)   p_kst 2.094241e-06   p_cons 1.047120e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.631534e-07	k: 0	n:3830000
Cons ci ratio: 1.753076e+00	ci left: 2.845602e-07	ci right 2.674042e-06	k: 4	n:3830000
KS ci ratio: 1.306665e+00	ci left: 9.017843e-07	ci right 4.115711e-06	k: 8	n:3830000
ZNF285   3830000 perm   7410 sec   (517 perm/sec)   p_kst 2.088773e-06   p_cons 1.044386e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.606452e-07	k: 0	n:3840000
Cons ci ratio: 1.753076e+00	ci left: 2.838192e-07	ci right 2.667078e-06	k: 4	n:3840000
KS ci ratio: 1.306665e+00	ci left: 8.994359e-07	ci right 4.104993e-06	k: 8	n:3840000
ZNF285   3840000 perm   7444 sec   (516 perm/sec)   p_kst 2.083333e-06   p_cons 1.041667e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.581500e-07	k: 0	n:3850000
Cons ci ratio: 1.600332e+00	ci left: 4.216849e-07	ci right 3.030733e-06	k: 5	n:3850000
KS ci ratio: 1.306665e+00	ci left: 8.970997e-07	ci right 4.094331e-06	k: 8	n:3850000
ZNF285   3850000 perm   7479 sec   (515 perm/sec)   p_kst 2.077922e-06   p_cons 1.298701e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.556678e-07	k: 0	n:3860000
Cons ci ratio: 1.600332e+00	ci left: 4.205925e-07	ci right 3.022881e-06	k: 5	n:3860000
KS ci ratio: 1.306665e+00	ci left: 8.947756e-07	ci right 4.083724e-06	k: 8	n:3860000
ZNF285   3860000 perm   7513 sec   (514 perm/sec)   p_kst 2.072539e-06   p_cons 1.295337e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.531984e-07	k: 0	n:3870000
Cons ci ratio: 1.600332e+00	ci left: 4.195057e-07	ci right 3.015070e-06	k: 5	n:3870000
KS ci ratio: 1.306665e+00	ci left: 8.924635e-07	ci right 4.073171e-06	k: 8	n:3870000
ZNF285   3870000 perm   7547 sec   (513 perm/sec)   p_kst 2.067183e-06   p_cons 1.291990e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.507417e-07	k: 0	n:3880000
Cons ci ratio: 1.600332e+00	ci left: 4.184245e-07	ci right 3.007300e-06	k: 5	n:3880000
KS ci ratio: 1.306665e+00	ci left: 8.901633e-07	ci right 4.062674e-06	k: 8	n:3880000
ZNF285   3880000 perm   7581 sec   (512 perm/sec)   p_kst 2.061856e-06   p_cons 1.288660e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.482976e-07	k: 0	n:3890000
Cons ci ratio: 1.600332e+00	ci left: 4.173488e-07	ci right 2.999569e-06	k: 5	n:3890000
KS ci ratio: 1.306665e+00	ci left: 8.878750e-07	ci right 4.052230e-06	k: 8	n:3890000
ZNF285   3890000 perm   7616 sec   (511 perm/sec)   p_kst 2.056555e-06   p_cons 1.285347e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.458661e-07	k: 0	n:3900000
Cons ci ratio: 1.600332e+00	ci left: 4.162787e-07	ci right 2.991877e-06	k: 5	n:3900000
KS ci ratio: 1.306665e+00	ci left: 8.855984e-07	ci right 4.041839e-06	k: 8	n:3900000
ZNF285   3900000 perm   7651 sec   (510 perm/sec)   p_kst 2.051282e-06   p_cons 1.282051e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.434470e-07	k: 0	n:3910000
Cons ci ratio: 1.600332e+00	ci left: 4.152140e-07	ci right 2.984226e-06	k: 5	n:3910000
KS ci ratio: 1.306665e+00	ci left: 8.833334e-07	ci right 4.031502e-06	k: 8	n:3910000
ZNF285   3910000 perm   7688 sec   (509 perm/sec)   p_kst 2.046036e-06   p_cons 1.278772e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.410402e-07	k: 0	n:3920000
Cons ci ratio: 1.600332e+00	ci left: 4.141548e-07	ci right 2.976613e-06	k: 5	n:3920000
KS ci ratio: 1.306665e+00	ci left: 8.810800e-07	ci right 4.021218e-06	k: 8	n:3920000
ZNF285   3920000 perm   7723 sec   (508 perm/sec)   p_kst 2.040816e-06   p_cons 1.275510e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.386457e-07	k: 0	n:3930000
Cons ci ratio: 1.600332e+00	ci left: 4.131010e-07	ci right 2.969039e-06	k: 5	n:3930000
KS ci ratio: 1.306665e+00	ci left: 8.788381e-07	ci right 4.010986e-06	k: 8	n:3930000
ZNF285   3930000 perm   7760 sec   (506 perm/sec)   p_kst 2.035623e-06   p_cons 1.272265e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.362634e-07	k: 0	n:3940000
Cons ci ratio: 1.600332e+00	ci left: 4.120525e-07	ci right 2.961503e-06	k: 5	n:3940000
KS ci ratio: 1.306665e+00	ci left: 8.766075e-07	ci right 4.000806e-06	k: 8	n:3940000
ZNF285   3940000 perm   7796 sec   (505 perm/sec)   p_kst 2.030457e-06   p_cons 1.269036e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.338931e-07	k: 0	n:3950000
Cons ci ratio: 1.600332e+00	ci left: 4.110093e-07	ci right 2.954006e-06	k: 5	n:3950000
KS ci ratio: 1.306665e+00	ci left: 8.743883e-07	ci right 3.990677e-06	k: 8	n:3950000
ZNF285   3950000 perm   7833 sec   (504 perm/sec)   p_kst 2.025316e-06   p_cons 1.265823e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.315348e-07	k: 0	n:3960000
Cons ci ratio: 1.600332e+00	ci left: 4.099714e-07	ci right 2.946546e-06	k: 5	n:3960000
KS ci ratio: 1.306665e+00	ci left: 8.721802e-07	ci right 3.980599e-06	k: 8	n:3960000
ZNF285   3960000 perm   7868 sec   (503 perm/sec)   p_kst 2.020202e-06   p_cons 1.262626e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.291883e-07	k: 0	n:3970000
Cons ci ratio: 1.600332e+00	ci left: 4.089388e-07	ci right 2.939124e-06	k: 5	n:3970000
KS ci ratio: 1.306665e+00	ci left: 8.699833e-07	ci right 3.970573e-06	k: 8	n:3970000
ZNF285   3970000 perm   7904 sec   (502 perm/sec)   p_kst 2.015113e-06   p_cons 1.259446e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.268537e-07	k: 0	n:3980000
Cons ci ratio: 1.600332e+00	ci left: 4.079113e-07	ci right 2.931739e-06	k: 5	n:3980000
KS ci ratio: 1.306665e+00	ci left: 8.677974e-07	ci right 3.960596e-06	k: 8	n:3980000
ZNF285   3980000 perm   7940 sec   (501 perm/sec)   p_kst 2.010050e-06   p_cons 1.256281e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.245308e-07	k: 0	n:3990000
Cons ci ratio: 1.600332e+00	ci left: 4.068889e-07	ci right 2.924392e-06	k: 5	n:3990000
KS ci ratio: 1.306665e+00	ci left: 8.656225e-07	ci right 3.950670e-06	k: 8	n:3990000
ZNF285   3990000 perm   7975 sec   (500 perm/sec)   p_kst 2.005013e-06   p_cons 1.253133e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.222194e-07	k: 0	n:4000000
Cons ci ratio: 1.600332e+00	ci left: 4.058717e-07	ci right 2.917081e-06	k: 5	n:4000000
KS ci ratio: 1.306665e+00	ci left: 8.634584e-07	ci right 3.940793e-06	k: 8	n:4000000
ZNF285   4000000 perm   8011 sec   (499 perm/sec)   p_kst 2.000000e-06   p_cons 1.250000e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.199196e-07	k: 0	n:4010000
Cons ci ratio: 1.600332e+00	ci left: 4.048596e-07	ci right 2.909806e-06	k: 5	n:4010000
KS ci ratio: 1.306665e+00	ci left: 8.613052e-07	ci right 3.930966e-06	k: 8	n:4010000
ZNF285   4010000 perm   8049 sec   (498 perm/sec)   p_kst 1.995012e-06   p_cons 1.246883e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.176313e-07	k: 0	n:4020000
Cons ci ratio: 1.600332e+00	ci left: 4.038525e-07	ci right 2.902568e-06	k: 5	n:4020000
KS ci ratio: 1.306665e+00	ci left: 8.591626e-07	ci right 3.921188e-06	k: 8	n:4020000
ZNF285   4020000 perm   8086 sec   (497 perm/sec)   p_kst 1.990050e-06   p_cons 1.243781e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.153543e-07	k: 0	n:4030000
Cons ci ratio: 1.600332e+00	ci left: 4.028503e-07	ci right 2.895365e-06	k: 5	n:4030000
KS ci ratio: 1.306665e+00	ci left: 8.570307e-07	ci right 3.911458e-06	k: 8	n:4030000
ZNF285   4030000 perm   8121 sec   (496 perm/sec)   p_kst 1.985112e-06   p_cons 1.240695e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.130886e-07	k: 0	n:4040000
Cons ci ratio: 1.600332e+00	ci left: 4.018532e-07	ci right 2.888199e-06	k: 5	n:4040000
KS ci ratio: 1.306665e+00	ci left: 8.549093e-07	ci right 3.901776e-06	k: 8	n:4040000
ZNF285   4040000 perm   8158 sec   (495 perm/sec)   p_kst 1.980198e-06   p_cons 1.237624e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.108340e-07	k: 0	n:4050000
Cons ci ratio: 1.600332e+00	ci left: 4.008610e-07	ci right 2.881067e-06	k: 5	n:4050000
KS ci ratio: 1.306665e+00	ci left: 8.527984e-07	ci right 3.892142e-06	k: 8	n:4050000
ZNF285   4050000 perm   8194 sec   (494 perm/sec)   p_kst 1.975309e-06   p_cons 1.234568e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.085906e-07	k: 0	n:4060000
Cons ci ratio: 1.600332e+00	ci left: 3.998736e-07	ci right 2.873971e-06	k: 5	n:4060000
KS ci ratio: 1.306665e+00	ci left: 8.506980e-07	ci right 3.882555e-06	k: 8	n:4060000
ZNF285   4060000 perm   8231 sec   (493 perm/sec)   p_kst 1.970443e-06   p_cons 1.231527e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.063582e-07	k: 0	n:4070000
Cons ci ratio: 1.600332e+00	ci left: 3.988911e-07	ci right 2.866910e-06	k: 5	n:4070000
KS ci ratio: 1.306665e+00	ci left: 8.486078e-07	ci right 3.873016e-06	k: 8	n:4070000
ZNF285   4070000 perm   8269 sec   (492 perm/sec)   p_kst 1.965602e-06   p_cons 1.228501e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.041367e-07	k: 0	n:4080000
Cons ci ratio: 1.600332e+00	ci left: 3.979134e-07	ci right 2.859883e-06	k: 5	n:4080000
KS ci ratio: 1.306665e+00	ci left: 8.465279e-07	ci right 3.863523e-06	k: 8	n:4080000
ZNF285   4080000 perm   8306 sec   (491 perm/sec)   p_kst 1.960784e-06   p_cons 1.225490e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.019261e-07	k: 0	n:4090000
Cons ci ratio: 1.600332e+00	ci left: 3.969406e-07	ci right 2.852891e-06	k: 5	n:4090000
KS ci ratio: 1.306665e+00	ci left: 8.444581e-07	ci right 3.854077e-06	k: 8	n:4090000
ZNF285   4090000 perm   8343 sec   (490 perm/sec)   p_kst 1.955990e-06   p_cons 1.222494e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.997263e-07	k: 0	n:4100000
Cons ci ratio: 1.600332e+00	ci left: 3.959724e-07	ci right 2.845932e-06	k: 5	n:4100000
KS ci ratio: 1.306665e+00	ci left: 8.423985e-07	ci right 3.844677e-06	k: 8	n:4100000
ZNF285   4100000 perm   8380 sec   (489 perm/sec)   p_kst 1.951220e-06   p_cons 1.219512e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.975372e-07	k: 0	n:4110000
Cons ci ratio: 1.600332e+00	ci left: 3.950090e-07	ci right 2.839008e-06	k: 5	n:4110000
KS ci ratio: 1.306665e+00	ci left: 8.403488e-07	ci right 3.835322e-06	k: 8	n:4110000
ZNF285   4110000 perm   8416 sec   (488 perm/sec)   p_kst 1.946472e-06   p_cons 1.216545e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.953587e-07	k: 0	n:4120000
Cons ci ratio: 1.600332e+00	ci left: 3.940502e-07	ci right 2.832117e-06	k: 5	n:4120000
KS ci ratio: 1.306665e+00	ci left: 8.383091e-07	ci right 3.826013e-06	k: 8	n:4120000
ZNF285   4120000 perm   8454 sec   (487 perm/sec)   p_kst 1.941748e-06   p_cons 1.213592e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.931908e-07	k: 0	n:4130000
Cons ci ratio: 1.600332e+00	ci left: 3.930961e-07	ci right 2.825260e-06	k: 5	n:4130000
KS ci ratio: 1.306665e+00	ci left: 8.362793e-07	ci right 3.816749e-06	k: 8	n:4130000
ZNF285   4130000 perm   8491 sec   (486 perm/sec)   p_kst 1.937046e-06   p_cons 1.210654e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.910333e-07	k: 0	n:4140000
Cons ci ratio: 1.600332e+00	ci left: 3.921466e-07	ci right 2.818435e-06	k: 5	n:4140000
KS ci ratio: 1.306665e+00	ci left: 8.342593e-07	ci right 3.807530e-06	k: 8	n:4140000
ZNF285   4140000 perm   8529 sec   (485 perm/sec)   p_kst 1.932367e-06   p_cons 1.207729e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.888862e-07	k: 0	n:4150000
Cons ci ratio: 1.600332e+00	ci left: 3.912017e-07	ci right 2.811644e-06	k: 5	n:4150000
KS ci ratio: 1.306665e+00	ci left: 8.322491e-07	ci right 3.798355e-06	k: 8	n:4150000
ZNF285   4150000 perm   8567 sec   (484 perm/sec)   p_kst 1.927711e-06   p_cons 1.204819e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.867495e-07	k: 0	n:4160000
Cons ci ratio: 1.600332e+00	ci left: 3.902613e-07	ci right 2.804885e-06	k: 5	n:4160000
KS ci ratio: 1.306665e+00	ci left: 8.302485e-07	ci right 3.789225e-06	k: 8	n:4160000
ZNF285   4160000 perm   8604 sec   (483 perm/sec)   p_kst 1.923077e-06   p_cons 1.201923e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.846230e-07	k: 0	n:4170000
Cons ci ratio: 1.600332e+00	ci left: 3.893254e-07	ci right 2.798159e-06	k: 5	n:4170000
KS ci ratio: 1.306665e+00	ci left: 8.282575e-07	ci right 3.780138e-06	k: 8	n:4170000
ZNF285   4170000 perm   8641 sec   (483 perm/sec)   p_kst 1.918465e-06   p_cons 1.199041e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.825067e-07	k: 0	n:4180000
Cons ci ratio: 1.600332e+00	ci left: 3.883940e-07	ci right 2.791465e-06	k: 5	n:4180000
KS ci ratio: 1.306665e+00	ci left: 8.262760e-07	ci right 3.771094e-06	k: 8	n:4180000
ZNF285   4180000 perm   8678 sec   (482 perm/sec)   p_kst 1.913876e-06   p_cons 1.196172e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.804004e-07	k: 0	n:4190000
Cons ci ratio: 1.600332e+00	ci left: 3.874670e-07	ci right 2.784803e-06	k: 5	n:4190000
KS ci ratio: 1.306665e+00	ci left: 8.243040e-07	ci right 3.762094e-06	k: 8	n:4190000
ZNF285   4190000 perm   8716 sec   (481 perm/sec)   p_kst 1.909308e-06   p_cons 1.193317e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.783042e-07	k: 0	n:4200000
Cons ci ratio: 1.600332e+00	ci left: 3.865445e-07	ci right 2.778172e-06	k: 5	n:4200000
KS ci ratio: 1.306665e+00	ci left: 8.223413e-07	ci right 3.753137e-06	k: 8	n:4200000
ZNF285   4200000 perm   8755 sec   (480 perm/sec)   p_kst 1.904762e-06   p_cons 1.190476e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.762180e-07	k: 0	n:4210000
Cons ci ratio: 1.600332e+00	ci left: 3.856263e-07	ci right 2.771573e-06	k: 5	n:4210000
KS ci ratio: 1.306665e+00	ci left: 8.203880e-07	ci right 3.744222e-06	k: 8	n:4210000
ZNF285   4210000 perm   8792 sec   (479 perm/sec)   p_kst 1.900238e-06   p_cons 1.187648e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.741417e-07	k: 0	n:4220000
Cons ci ratio: 1.600332e+00	ci left: 3.847125e-07	ci right 2.765005e-06	k: 5	n:4220000
KS ci ratio: 1.306665e+00	ci left: 8.184440e-07	ci right 3.735349e-06	k: 8	n:4220000
ZNF285   4220000 perm   8829 sec   (478 perm/sec)   p_kst 1.895735e-06   p_cons 1.184834e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.720751e-07	k: 0	n:4230000
Cons ci ratio: 1.600332e+00	ci left: 3.838030e-07	ci right 2.758469e-06	k: 5	n:4230000
KS ci ratio: 1.306665e+00	ci left: 8.165091e-07	ci right 3.726519e-06	k: 8	n:4230000
ZNF285   4230000 perm   8868 sec   (477 perm/sec)   p_kst 1.891253e-06   p_cons 1.182033e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.700184e-07	k: 0	n:4240000
Cons ci ratio: 1.600332e+00	ci left: 3.828978e-07	ci right 2.751963e-06	k: 5	n:4240000
KS ci ratio: 1.306665e+00	ci left: 8.145834e-07	ci right 3.717730e-06	k: 8	n:4240000
ZNF285   4240000 perm   8905 sec   (476 perm/sec)   p_kst 1.886792e-06   p_cons 1.179245e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.679713e-07	k: 0	n:4250000
Cons ci ratio: 1.600332e+00	ci left: 3.819969e-07	ci right 2.745488e-06	k: 5	n:4250000
KS ci ratio: 1.306665e+00	ci left: 8.126667e-07	ci right 3.708982e-06	k: 8	n:4250000
ZNF285   4250000 perm   8944 sec   (475 perm/sec)   p_kst 1.882353e-06   p_cons 1.176471e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.659338e-07	k: 0	n:4260000
Cons ci ratio: 1.600332e+00	ci left: 3.811002e-07	ci right 2.739043e-06	k: 5	n:4260000
KS ci ratio: 1.306665e+00	ci left: 8.107591e-07	ci right 3.700276e-06	k: 8	n:4260000
ZNF285   4260000 perm   8983 sec   (474 perm/sec)   p_kst 1.877934e-06   p_cons 1.173709e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.639058e-07	k: 0	n:4270000
Cons ci ratio: 1.600332e+00	ci left: 3.802077e-07	ci right 2.732628e-06	k: 5	n:4270000
KS ci ratio: 1.306665e+00	ci left: 8.088603e-07	ci right 3.691610e-06	k: 8	n:4270000
ZNF285   4270000 perm   9021 sec   (473 perm/sec)   p_kst 1.873536e-06   p_cons 1.170960e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.618874e-07	k: 0	n:4280000
Cons ci ratio: 1.600332e+00	ci left: 3.793194e-07	ci right 2.726244e-06	k: 5	n:4280000
KS ci ratio: 1.306665e+00	ci left: 8.069705e-07	ci right 3.682985e-06	k: 8	n:4280000
ZNF285   4280000 perm   9059 sec   (472 perm/sec)   p_kst 1.869159e-06   p_cons 1.168224e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.598783e-07	k: 0	n:4290000
Cons ci ratio: 1.600332e+00	ci left: 3.784352e-07	ci right 2.719889e-06	k: 5	n:4290000
KS ci ratio: 1.306665e+00	ci left: 8.050894e-07	ci right 3.674400e-06	k: 8	n:4290000
ZNF285   4290000 perm   9144 sec   (469 perm/sec)   p_kst 1.864802e-06   p_cons 1.165501e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.578786e-07	k: 0	n:4300000
Cons ci ratio: 1.600332e+00	ci left: 3.775551e-07	ci right 2.713563e-06	k: 5	n:4300000
KS ci ratio: 1.306665e+00	ci left: 8.032171e-07	ci right 3.665855e-06	k: 8	n:4300000
ZNF285   4300000 perm   9182 sec   (468 perm/sec)   p_kst 1.860465e-06   p_cons 1.162791e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.558881e-07	k: 0	n:4310000
Cons ci ratio: 1.600332e+00	ci left: 3.766791e-07	ci right 2.707268e-06	k: 5	n:4310000
KS ci ratio: 1.306665e+00	ci left: 8.013535e-07	ci right 3.657349e-06	k: 8	n:4310000
ZNF285   4310000 perm   9221 sec   (467 perm/sec)   p_kst 1.856148e-06   p_cons 1.160093e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.539069e-07	k: 0	n:4320000
Cons ci ratio: 1.600332e+00	ci left: 3.758071e-07	ci right 2.701001e-06	k: 5	n:4320000
KS ci ratio: 1.306665e+00	ci left: 7.994985e-07	ci right 3.648883e-06	k: 8	n:4320000
ZNF285   4320000 perm   9259 sec   (467 perm/sec)   p_kst 1.851852e-06   p_cons 1.157407e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.519348e-07	k: 0	n:4330000
Cons ci ratio: 1.600332e+00	ci left: 3.749392e-07	ci right 2.694763e-06	k: 5	n:4330000
KS ci ratio: 1.306665e+00	ci left: 7.976521e-07	ci right 3.640456e-06	k: 8	n:4330000
ZNF285   4330000 perm   9298 sec   (466 perm/sec)   p_kst 1.847575e-06   p_cons 1.154734e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.499719e-07	k: 0	n:4340000
Cons ci ratio: 1.600332e+00	ci left: 3.740753e-07	ci right 2.688554e-06	k: 5	n:4340000
KS ci ratio: 1.306665e+00	ci left: 7.958142e-07	ci right 3.632068e-06	k: 8	n:4340000
ZNF285   4340000 perm   9337 sec   (465 perm/sec)   p_kst 1.843318e-06   p_cons 1.152074e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.480179e-07	k: 0	n:4350000
Cons ci ratio: 1.600332e+00	ci left: 3.732154e-07	ci right 2.682373e-06	k: 5	n:4350000
KS ci ratio: 1.306665e+00	ci left: 7.939847e-07	ci right 3.623718e-06	k: 8	n:4350000
ZNF285   4350000 perm   9376 sec   (464 perm/sec)   p_kst 1.839080e-06   p_cons 1.149425e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.460729e-07	k: 0	n:4360000
Cons ci ratio: 1.600332e+00	ci left: 3.723594e-07	ci right 2.676221e-06	k: 5	n:4360000
KS ci ratio: 1.306665e+00	ci left: 7.921637e-07	ci right 3.615407e-06	k: 8	n:4360000
ZNF285   4360000 perm   9415 sec   (463 perm/sec)   p_kst 1.834862e-06   p_cons 1.146789e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.441368e-07	k: 0	n:4370000
Cons ci ratio: 1.600332e+00	ci left: 3.715073e-07	ci right 2.670097e-06	k: 5	n:4370000
KS ci ratio: 1.306665e+00	ci left: 7.903509e-07	ci right 3.607134e-06	k: 8	n:4370000
ZNF285   4370000 perm   9454 sec   (462 perm/sec)   p_kst 1.830664e-06   p_cons 1.144165e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.422096e-07	k: 0	n:4380000
Cons ci ratio: 1.600332e+00	ci left: 3.706591e-07	ci right 2.664001e-06	k: 5	n:4380000
KS ci ratio: 1.306665e+00	ci left: 7.885465e-07	ci right 3.598898e-06	k: 8	n:4380000
ZNF285   4380000 perm   9492 sec   (461 perm/sec)   p_kst 1.826484e-06   p_cons 1.141553e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.402911e-07	k: 0	n:4390000
Cons ci ratio: 1.600332e+00	ci left: 3.698148e-07	ci right 2.657932e-06	k: 5	n:4390000
KS ci ratio: 1.306665e+00	ci left: 7.867502e-07	ci right 3.590701e-06	k: 8	n:4390000
ZNF285   4390000 perm   9532 sec   (461 perm/sec)   p_kst 1.822323e-06   p_cons 1.138952e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.383813e-07	k: 0	n:4400000
Cons ci ratio: 1.600332e+00	ci left: 3.689743e-07	ci right 2.651892e-06	k: 5	n:4400000
KS ci ratio: 1.306665e+00	ci left: 7.849622e-07	ci right 3.582540e-06	k: 8	n:4400000
ZNF285   4400000 perm   9571 sec   (460 perm/sec)   p_kst 1.818182e-06   p_cons 1.136364e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.364803e-07	k: 0	n:4410000
Cons ci ratio: 1.600332e+00	ci left: 3.681376e-07	ci right 2.645878e-06	k: 5	n:4410000
KS ci ratio: 1.306665e+00	ci left: 7.831822e-07	ci right 3.574416e-06	k: 8	n:4410000
ZNF285   4410000 perm   9609 sec   (459 perm/sec)   p_kst 1.814059e-06   p_cons 1.133787e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.345878e-07	k: 0	n:4420000
Cons ci ratio: 1.600332e+00	ci left: 3.673047e-07	ci right 2.639892e-06	k: 5	n:4420000
KS ci ratio: 1.306665e+00	ci left: 7.814103e-07	ci right 3.566329e-06	k: 8	n:4420000
ZNF285   4420000 perm   9648 sec   (458 perm/sec)   p_kst 1.809955e-06   p_cons 1.131222e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.327038e-07	k: 0	n:4430000
Cons ci ratio: 1.600332e+00	ci left: 3.664756e-07	ci right 2.633933e-06	k: 5	n:4430000
KS ci ratio: 1.306665e+00	ci left: 7.796464e-07	ci right 3.558279e-06	k: 8	n:4430000
ZNF285   4430000 perm   9688 sec   (457 perm/sec)   p_kst 1.805869e-06   p_cons 1.128668e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.308284e-07	k: 0	n:4440000
Cons ci ratio: 1.385928e+00	ci left: 6.338658e-07	ci right 3.248348e-06	k: 7	n:4440000
KS ci ratio: 1.306665e+00	ci left: 7.778904e-07	ci right 3.550265e-06	k: 8	n:4440000
ZNF285   4440000 perm   9728 sec   (456 perm/sec)   p_kst 1.801802e-06   p_cons 1.576577e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.289613e-07	k: 0	n:4450000
Cons ci ratio: 1.385928e+00	ci left: 6.324414e-07	ci right 3.241048e-06	k: 7	n:4450000
KS ci ratio: 1.306665e+00	ci left: 7.761424e-07	ci right 3.542287e-06	k: 8	n:4450000
ZNF285   4450000 perm   9768 sec   (456 perm/sec)   p_kst 1.797753e-06   p_cons 1.573034e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.271027e-07	k: 0	n:4460000
Cons ci ratio: 1.385928e+00	ci left: 6.310233e-07	ci right 3.233781e-06	k: 7	n:4460000
KS ci ratio: 1.306665e+00	ci left: 7.744021e-07	ci right 3.534344e-06	k: 8	n:4460000
ZNF285   4460000 perm   9808 sec   (455 perm/sec)   p_kst 1.793722e-06   p_cons 1.569507e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.252523e-07	k: 0	n:4470000
Cons ci ratio: 1.385928e+00	ci left: 6.296116e-07	ci right 3.226547e-06	k: 7	n:4470000
KS ci ratio: 1.306665e+00	ci left: 7.726697e-07	ci right 3.526437e-06	k: 8	n:4470000
ZNF285   4470000 perm   9896 sec   (452 perm/sec)   p_kst 1.789709e-06   p_cons 1.565996e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.234103e-07	k: 0	n:4480000
Cons ci ratio: 1.385928e+00	ci left: 6.282063e-07	ci right 3.219345e-06	k: 7	n:4480000
KS ci ratio: 1.306665e+00	ci left: 7.709450e-07	ci right 3.518566e-06	k: 8	n:4480000
ZNF285   4480000 perm   9977 sec   (449 perm/sec)   p_kst 1.785714e-06   p_cons 1.562500e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.215764e-07	k: 0	n:4490000
Cons ci ratio: 1.385928e+00	ci left: 6.268071e-07	ci right 3.212174e-06	k: 7	n:4490000
KS ci ratio: 1.306665e+00	ci left: 7.692280e-07	ci right 3.510730e-06	k: 8	n:4490000
ZNF285   4490000 perm   10025 sec   (448 perm/sec)   p_kst 1.781737e-06   p_cons 1.559020e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.197507e-07	k: 0	n:4500000
Cons ci ratio: 1.385928e+00	ci left: 6.254142e-07	ci right 3.205036e-06	k: 7	n:4500000
KS ci ratio: 1.306665e+00	ci left: 7.675186e-07	ci right 3.502928e-06	k: 8	n:4500000
ZNF285   4500000 perm   10064 sec   (447 perm/sec)   p_kst 1.777778e-06   p_cons 1.555556e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.179330e-07	k: 0	n:4510000
Cons ci ratio: 1.385928e+00	ci left: 6.240275e-07	ci right 3.197930e-06	k: 7	n:4510000
KS ci ratio: 1.306665e+00	ci left: 7.658167e-07	ci right 3.495161e-06	k: 8	n:4510000
ZNF285   4510000 perm   10104 sec   (446 perm/sec)   p_kst 1.773836e-06   p_cons 1.552106e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.161234e-07	k: 0	n:4520000
Cons ci ratio: 1.385928e+00	ci left: 6.226469e-07	ci right 3.190855e-06	k: 7	n:4520000
KS ci ratio: 1.306665e+00	ci left: 7.641225e-07	ci right 3.487428e-06	k: 8	n:4520000
ZNF285   4520000 perm   10145 sec   (446 perm/sec)   p_kst 1.769912e-06   p_cons 1.548673e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.143218e-07	k: 0	n:4530000
Cons ci ratio: 1.306665e+00	ci left: 7.624357e-07	ci right 3.479730e-06	k: 8	n:4530000
KS ci ratio: 1.306665e+00	ci left: 7.624357e-07	ci right 3.479730e-06	k: 8	n:4530000
ZNF285   4530000 perm   10185 sec   (445 perm/sec)   p_kst 1.766004e-06   p_cons 1.766004e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.125282e-07	k: 0	n:4540000
Cons ci ratio: 1.306665e+00	ci left: 7.607563e-07	ci right 3.472065e-06	k: 8	n:4540000
KS ci ratio: 1.306665e+00	ci left: 7.607563e-07	ci right 3.472065e-06	k: 8	n:4540000
ZNF285   4540000 perm   10225 sec   (444 perm/sec)   p_kst 1.762115e-06   p_cons 1.762115e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.107424e-07	k: 0	n:4550000
Cons ci ratio: 1.306665e+00	ci left: 7.590843e-07	ci right 3.464434e-06	k: 8	n:4550000
KS ci ratio: 1.306665e+00	ci left: 7.590843e-07	ci right 3.464434e-06	k: 8	n:4550000
ZNF285   4550000 perm   10267 sec   (443 perm/sec)   p_kst 1.758242e-06   p_cons 1.758242e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.089645e-07	k: 0	n:4560000
Cons ci ratio: 1.306665e+00	ci left: 7.574196e-07	ci right 3.456837e-06	k: 8	n:4560000
KS ci ratio: 1.306665e+00	ci left: 7.574196e-07	ci right 3.456837e-06	k: 8	n:4560000
ZNF285   4560000 perm   10308 sec   (442 perm/sec)   p_kst 1.754386e-06   p_cons 1.754386e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.071943e-07	k: 0	n:4570000
Cons ci ratio: 1.306665e+00	ci left: 7.557623e-07	ci right 3.449273e-06	k: 8	n:4570000
KS ci ratio: 1.306665e+00	ci left: 7.557623e-07	ci right 3.449273e-06	k: 8	n:4570000
ZNF285   4570000 perm   10350 sec   (442 perm/sec)   p_kst 1.750547e-06   p_cons 1.750547e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.054319e-07	k: 0	n:4580000
Cons ci ratio: 1.306665e+00	ci left: 7.541121e-07	ci right 3.441741e-06	k: 8	n:4580000
KS ci ratio: 1.306665e+00	ci left: 7.541121e-07	ci right 3.441741e-06	k: 8	n:4580000
ZNF285   4580000 perm   10393 sec   (441 perm/sec)   p_kst 1.746725e-06   p_cons 1.746725e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.036771e-07	k: 0	n:4590000
Cons ci ratio: 1.306665e+00	ci left: 7.524692e-07	ci right 3.434243e-06	k: 8	n:4590000
KS ci ratio: 1.306665e+00	ci left: 7.524692e-07	ci right 3.434243e-06	k: 8	n:4590000
ZNF285   4590000 perm   10437 sec   (440 perm/sec)   p_kst 1.742919e-06   p_cons 1.742919e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.019300e-07	k: 0	n:4600000
Cons ci ratio: 1.306665e+00	ci left: 7.508334e-07	ci right 3.426777e-06	k: 8	n:4600000
KS ci ratio: 1.306665e+00	ci left: 7.508334e-07	ci right 3.426777e-06	k: 8	n:4600000
ZNF285   4600000 perm   10478 sec   (439 perm/sec)   p_kst 1.739130e-06   p_cons 1.739130e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.001904e-07	k: 0	n:4610000
Cons ci ratio: 1.306665e+00	ci left: 7.492047e-07	ci right 3.419344e-06	k: 8	n:4610000
KS ci ratio: 1.306665e+00	ci left: 7.492047e-07	ci right 3.419344e-06	k: 8	n:4610000
ZNF285   4610000 perm   10519 sec   (438 perm/sec)   p_kst 1.735358e-06   p_cons 1.735358e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.984584e-07	k: 0	n:4620000
Cons ci ratio: 1.306665e+00	ci left: 7.475830e-07	ci right 3.411943e-06	k: 8	n:4620000
KS ci ratio: 1.306665e+00	ci left: 7.475830e-07	ci right 3.411943e-06	k: 8	n:4620000
ZNF285   4620000 perm   10562 sec   (437 perm/sec)   p_kst 1.731602e-06   p_cons 1.731602e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.967339e-07	k: 0	n:4630000
Cons ci ratio: 1.306665e+00	ci left: 7.459684e-07	ci right 3.404574e-06	k: 8	n:4630000
KS ci ratio: 1.306665e+00	ci left: 7.459684e-07	ci right 3.404574e-06	k: 8	n:4630000
ZNF285   4630000 perm   10603 sec   (437 perm/sec)   p_kst 1.727862e-06   p_cons 1.727862e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.950168e-07	k: 0	n:4640000
Cons ci ratio: 1.306665e+00	ci left: 7.443607e-07	ci right 3.397236e-06	k: 8	n:4640000
KS ci ratio: 1.306665e+00	ci left: 7.443607e-07	ci right 3.397236e-06	k: 8	n:4640000
ZNF285   4640000 perm   10645 sec   (436 perm/sec)   p_kst 1.724138e-06   p_cons 1.724138e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.933071e-07	k: 0	n:4650000
Cons ci ratio: 1.306665e+00	ci left: 7.427599e-07	ci right 3.389930e-06	k: 8	n:4650000
KS ci ratio: 1.306665e+00	ci left: 7.427599e-07	ci right 3.389930e-06	k: 8	n:4650000
ZNF285   4650000 perm   10689 sec   (435 perm/sec)   p_kst 1.720430e-06   p_cons 1.720430e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.916047e-07	k: 0	n:4660000
Cons ci ratio: 1.306665e+00	ci left: 7.411660e-07	ci right 3.382656e-06	k: 8	n:4660000
KS ci ratio: 1.306665e+00	ci left: 7.411660e-07	ci right 3.382656e-06	k: 8	n:4660000
ZNF285   4660000 perm   10732 sec   (434 perm/sec)   p_kst 1.716738e-06   p_cons 1.716738e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.899096e-07	k: 0	n:4670000
Cons ci ratio: 1.306665e+00	ci left: 7.395789e-07	ci right 3.375412e-06	k: 8	n:4670000
KS ci ratio: 1.306665e+00	ci left: 7.395789e-07	ci right 3.375412e-06	k: 8	n:4670000
ZNF285   4670000 perm   10774 sec   (433 perm/sec)   p_kst 1.713062e-06   p_cons 1.713062e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.882218e-07	k: 0	n:4680000
Cons ci ratio: 1.306665e+00	ci left: 7.379986e-07	ci right 3.368200e-06	k: 8	n:4680000
KS ci ratio: 1.306665e+00	ci left: 7.379986e-07	ci right 3.368200e-06	k: 8	n:4680000
ZNF285   4680000 perm   10816 sec   (433 perm/sec)   p_kst 1.709402e-06   p_cons 1.709402e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.865412e-07	k: 0	n:4690000
Cons ci ratio: 1.306665e+00	ci left: 7.364250e-07	ci right 3.361018e-06	k: 8	n:4690000
KS ci ratio: 1.306665e+00	ci left: 7.364250e-07	ci right 3.361018e-06	k: 8	n:4690000
ZNF285   4690000 perm   10857 sec   (432 perm/sec)   p_kst 1.705757e-06   p_cons 1.705757e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.848677e-07	k: 0	n:4700000
Cons ci ratio: 1.306665e+00	ci left: 7.348582e-07	ci right 3.353867e-06	k: 8	n:4700000
KS ci ratio: 1.306665e+00	ci left: 7.348582e-07	ci right 3.353867e-06	k: 8	n:4700000
ZNF285   4700000 perm   10901 sec   (431 perm/sec)   p_kst 1.702128e-06   p_cons 1.702128e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.832013e-07	k: 0	n:4710000
Cons ci ratio: 1.306665e+00	ci left: 7.332980e-07	ci right 3.346747e-06	k: 8	n:4710000
KS ci ratio: 1.306665e+00	ci left: 7.332980e-07	ci right 3.346747e-06	k: 8	n:4710000
ZNF285   4710000 perm   10943 sec   (430 perm/sec)   p_kst 1.698514e-06   p_cons 1.698514e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.815419e-07	k: 0	n:4720000
Cons ci ratio: 1.306665e+00	ci left: 7.317444e-07	ci right 3.339656e-06	k: 8	n:4720000
KS ci ratio: 1.306665e+00	ci left: 7.317444e-07	ci right 3.339656e-06	k: 8	n:4720000
ZNF285   4720000 perm   10985 sec   (430 perm/sec)   p_kst 1.694915e-06   p_cons 1.694915e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.798896e-07	k: 0	n:4730000
Cons ci ratio: 1.239611e+00	ci left: 8.700581e-07	ci right 3.612006e-06	k: 9	n:4730000
KS ci ratio: 1.306665e+00	ci left: 7.301973e-07	ci right 3.332595e-06	k: 8	n:4730000
ZNF285   4730000 perm   11028 sec   (429 perm/sec)   p_kst 1.691332e-06   p_cons 1.902748e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.782443e-07	k: 0	n:4740000
Cons ci ratio: 1.239611e+00	ci left: 8.682225e-07	ci right 3.604386e-06	k: 9	n:4740000
KS ci ratio: 1.306665e+00	ci left: 7.286569e-07	ci right 3.325565e-06	k: 8	n:4740000
ZNF285   4740000 perm   11073 sec   (428 perm/sec)   p_kst 1.687764e-06   p_cons 1.898734e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.766059e-07	k: 0	n:4750000
Cons ci ratio: 1.239611e+00	ci left: 8.663947e-07	ci right 3.596798e-06	k: 9	n:4750000
KS ci ratio: 1.306665e+00	ci left: 7.271228e-07	ci right 3.318563e-06	k: 8	n:4750000
ZNF285   4750000 perm   11115 sec   (427 perm/sec)   p_kst 1.684211e-06   p_cons 1.894737e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.749744e-07	k: 0	n:4760000
Cons ci ratio: 1.239611e+00	ci left: 8.645745e-07	ci right 3.589241e-06	k: 9	n:4760000
KS ci ratio: 1.306665e+00	ci left: 7.255953e-07	ci right 3.311592e-06	k: 8	n:4760000
ZNF285   4760000 perm   11157 sec   (427 perm/sec)   p_kst 1.680672e-06   p_cons 1.890756e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.733497e-07	k: 0	n:4770000
Cons ci ratio: 1.239611e+00	ci left: 8.627620e-07	ci right 3.581717e-06	k: 9	n:4770000
KS ci ratio: 1.306665e+00	ci left: 7.240741e-07	ci right 3.304649e-06	k: 8	n:4770000
ZNF285   4770000 perm   11200 sec   (426 perm/sec)   p_kst 1.677149e-06   p_cons 1.886792e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.717318e-07	k: 0	n:4780000
Cons ci ratio: 1.239611e+00	ci left: 8.609571e-07	ci right 3.574224e-06	k: 9	n:4780000
KS ci ratio: 1.306665e+00	ci left: 7.225593e-07	ci right 3.297736e-06	k: 8	n:4780000
ZNF285   4780000 perm   11243 sec   (425 perm/sec)   p_kst 1.673640e-06   p_cons 1.882845e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.701207e-07	k: 0	n:4790000
Cons ci ratio: 1.239611e+00	ci left: 8.591597e-07	ci right 3.566762e-06	k: 9	n:4790000
KS ci ratio: 1.306665e+00	ci left: 7.210508e-07	ci right 3.290851e-06	k: 8	n:4790000
ZNF285   4790000 perm   11285 sec   (424 perm/sec)   p_kst 1.670146e-06   p_cons 1.878914e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.685163e-07	k: 0	n:4800000
Cons ci ratio: 1.239611e+00	ci left: 8.573697e-07	ci right 3.559331e-06	k: 9	n:4800000
KS ci ratio: 1.306665e+00	ci left: 7.195486e-07	ci right 3.283995e-06	k: 8	n:4800000
ZNF285   4800000 perm   11328 sec   (424 perm/sec)   p_kst 1.666667e-06   p_cons 1.875000e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.669185e-07	k: 0	n:4810000
Cons ci ratio: 1.239611e+00	ci left: 8.555873e-07	ci right 3.551931e-06	k: 9	n:4810000
KS ci ratio: 1.306665e+00	ci left: 7.180527e-07	ci right 3.277168e-06	k: 8	n:4810000
ZNF285   4810000 perm   11371 sec   (423 perm/sec)   p_kst 1.663202e-06   p_cons 1.871102e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.653274e-07	k: 0	n:4820000
Cons ci ratio: 1.239611e+00	ci left: 8.538122e-07	ci right 3.544562e-06	k: 9	n:4820000
KS ci ratio: 1.306665e+00	ci left: 7.165630e-07	ci right 3.270369e-06	k: 8	n:4820000
ZNF285   4820000 perm   11414 sec   (422 perm/sec)   p_kst 1.659751e-06   p_cons 1.867220e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.637429e-07	k: 0	n:4830000
Cons ci ratio: 1.239611e+00	ci left: 8.520445e-07	ci right 3.537223e-06	k: 9	n:4830000
KS ci ratio: 1.306665e+00	ci left: 7.150794e-07	ci right 3.263598e-06	k: 8	n:4830000
ZNF285   4830000 perm   11456 sec   (422 perm/sec)   p_kst 1.656315e-06   p_cons 1.863354e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.621649e-07	k: 0	n:4840000
Cons ci ratio: 1.239611e+00	ci left: 8.502840e-07	ci right 3.529915e-06	k: 9	n:4840000
KS ci ratio: 1.306665e+00	ci left: 7.136020e-07	ci right 3.256855e-06	k: 8	n:4840000
ZNF285   4840000 perm   11500 sec   (421 perm/sec)   p_kst 1.652893e-06   p_cons 1.859504e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.605934e-07	k: 0	n:4850000
Cons ci ratio: 1.239611e+00	ci left: 8.485309e-07	ci right 3.522637e-06	k: 9	n:4850000
KS ci ratio: 1.239611e+00	ci left: 8.485309e-07	ci right 3.522637e-06	k: 9	n:4850000
ZNF285   4850000 perm   11542 sec   (420 perm/sec)   p_kst 1.855670e-06   p_cons 1.855670e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.590284e-07	k: 0	n:4860000
Cons ci ratio: 1.239611e+00	ci left: 8.467849e-07	ci right 3.515389e-06	k: 9	n:4860000
KS ci ratio: 1.239611e+00	ci left: 8.467849e-07	ci right 3.515389e-06	k: 9	n:4860000
ZNF285   4860000 perm   11585 sec   (420 perm/sec)   p_kst 1.851852e-06   p_cons 1.851852e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.574698e-07	k: 0	n:4870000
Cons ci ratio: 1.239611e+00	ci left: 8.450461e-07	ci right 3.508170e-06	k: 9	n:4870000
KS ci ratio: 1.239611e+00	ci left: 8.450461e-07	ci right 3.508170e-06	k: 9	n:4870000
ZNF285   4870000 perm   11627 sec   (419 perm/sec)   p_kst 1.848049e-06   p_cons 1.848049e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.559176e-07	k: 0	n:4880000
Cons ci ratio: 1.239611e+00	ci left: 8.433145e-07	ci right 3.500981e-06	k: 9	n:4880000
KS ci ratio: 1.239611e+00	ci left: 8.433145e-07	ci right 3.500981e-06	k: 9	n:4880000
ZNF285   4880000 perm   11669 sec   (418 perm/sec)   p_kst 1.844262e-06   p_cons 1.844262e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.543718e-07	k: 0	n:4890000
Cons ci ratio: 1.239611e+00	ci left: 8.415899e-07	ci right 3.493822e-06	k: 9	n:4890000
KS ci ratio: 1.239611e+00	ci left: 8.415899e-07	ci right 3.493822e-06	k: 9	n:4890000
ZNF285   4890000 perm   11713 sec   (417 perm/sec)   p_kst 1.840491e-06   p_cons 1.840491e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.528323e-07	k: 0	n:4900000
Cons ci ratio: 1.239611e+00	ci left: 8.398724e-07	ci right 3.486692e-06	k: 9	n:4900000
KS ci ratio: 1.239611e+00	ci left: 8.398724e-07	ci right 3.486692e-06	k: 9	n:4900000
ZNF285   4900000 perm   11755 sec   (417 perm/sec)   p_kst 1.836735e-06   p_cons 1.836735e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.512990e-07	k: 0	n:4910000
Cons ci ratio: 1.239611e+00	ci left: 8.381619e-07	ci right 3.479591e-06	k: 9	n:4910000
KS ci ratio: 1.239611e+00	ci left: 8.381619e-07	ci right 3.479591e-06	k: 9	n:4910000
ZNF285   4910000 perm   11798 sec   (416 perm/sec)   p_kst 1.832994e-06   p_cons 1.832994e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.497720e-07	k: 0	n:4920000
Cons ci ratio: 1.239611e+00	ci left: 8.364583e-07	ci right 3.472518e-06	k: 9	n:4920000
KS ci ratio: 1.239611e+00	ci left: 8.364583e-07	ci right 3.472518e-06	k: 9	n:4920000
ZNF285   4920000 perm   11841 sec   (416 perm/sec)   p_kst 1.829268e-06   p_cons 1.829268e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.482511e-07	k: 0	n:4930000
Cons ci ratio: 1.239611e+00	ci left: 8.347616e-07	ci right 3.465475e-06	k: 9	n:4930000
KS ci ratio: 1.239611e+00	ci left: 8.347616e-07	ci right 3.465475e-06	k: 9	n:4930000
ZNF285   4930000 perm   11884 sec   (415 perm/sec)   p_kst 1.825558e-06   p_cons 1.825558e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.467365e-07	k: 0	n:4940000
Cons ci ratio: 1.239611e+00	ci left: 8.330718e-07	ci right 3.458459e-06	k: 9	n:4940000
KS ci ratio: 1.239611e+00	ci left: 8.330718e-07	ci right 3.458459e-06	k: 9	n:4940000
ZNF285   4940000 perm   11927 sec   (414 perm/sec)   p_kst 1.821862e-06   p_cons 1.821862e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.452279e-07	k: 0	n:4950000
Cons ci ratio: 1.239611e+00	ci left: 8.313888e-07	ci right 3.451473e-06	k: 9	n:4950000
KS ci ratio: 1.239611e+00	ci left: 8.313888e-07	ci right 3.451473e-06	k: 9	n:4950000
ZNF285   4950000 perm   11971 sec   (414 perm/sec)   p_kst 1.818182e-06   p_cons 1.818182e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.437254e-07	k: 0	n:4960000
Cons ci ratio: 1.239611e+00	ci left: 8.297126e-07	ci right 3.444514e-06	k: 9	n:4960000
KS ci ratio: 1.239611e+00	ci left: 8.297126e-07	ci right 3.444514e-06	k: 9	n:4960000
ZNF285   4960000 perm   12015 sec   (413 perm/sec)   p_kst 1.814516e-06   p_cons 1.814516e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.422290e-07	k: 0	n:4970000
Cons ci ratio: 1.239611e+00	ci left: 8.280432e-07	ci right 3.437583e-06	k: 9	n:4970000
KS ci ratio: 1.239611e+00	ci left: 8.280432e-07	ci right 3.437583e-06	k: 9	n:4970000
ZNF285   4970000 perm   12059 sec   (412 perm/sec)   p_kst 1.810865e-06   p_cons 1.810865e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.407386e-07	k: 0	n:4980000
Cons ci ratio: 1.239611e+00	ci left: 8.263805e-07	ci right 3.430681e-06	k: 9	n:4980000
KS ci ratio: 1.239611e+00	ci left: 8.263805e-07	ci right 3.430681e-06	k: 9	n:4980000
ZNF285   4980000 perm   12103 sec   (411 perm/sec)   p_kst 1.807229e-06   p_cons 1.807229e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.392541e-07	k: 0	n:4990000
Cons ci ratio: 1.239611e+00	ci left: 8.247244e-07	ci right 3.423806e-06	k: 9	n:4990000
KS ci ratio: 1.239611e+00	ci left: 8.247244e-07	ci right 3.423806e-06	k: 9	n:4990000
ZNF285   4990000 perm   12147 sec   (411 perm/sec)   p_kst 1.803607e-06   p_cons 1.803607e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.377756e-07	k: 0	n:5000000
Cons ci ratio: 1.239611e+00	ci left: 8.230749e-07	ci right 3.416958e-06	k: 9	n:5000000
KS ci ratio: 1.239611e+00	ci left: 8.230749e-07	ci right 3.416958e-06	k: 9	n:5000000
ZNF285   5000000 perm   12191 sec   (410 perm/sec)   p_kst 1.800000e-06   p_cons 1.800000e-06   p_joint 0

Outputting figure to mutsig2_images.part000000000196/ZNF285.4_1785_5000000_1.8e-06_1.8e-06_0.png
                gene_name: ZNF285
               theta_stop: 3.9 
                    nperm: 5000000 
                     p_ks: 1.80e-06 
        ci_ks_bounds_left: 8.23e-07 
       ci_ks_bounds_right: 3.42e-06 
                   p_cons: 1.80e-06 
      ci_cons_bounds_left: 8.23e-07 
     ci_cons_bounds_right: 3.42e-06 
                  p_joint: 0 
     ci_joint_bounds_left: 0 
    ci_joint_bounds_right: 7.38e-07 

Current progress: 33 percent done.
ZNF257
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.268081e-02	ci left: 5.801849e-01	ci right 5.995628e-01	k: 5899	n:10000
Cons ci ratio: 6.670348e-02	ci left: 2.480616e-01	ci right 2.652804e-01	k: 2566	n:10000
KS ci ratio: 4.054177e-02	ci left: 4.732619e-01	ci right 4.929479e-01	k: 4831	n:10000
ZNF257   10000 perm   2 sec   (6158 perm/sec)   p_kst 4.831000e-01   p_cons 2.566000e-01   p_joint 5.899000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF257.2_1708_10000_0.4831_0.2566_0.5899.png
                gene_name: ZNF257
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 67 percent done.
ZNF292
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.070134e-01	ci left: 1.119342e-01	ci right 1.246891e-01	k: 1182	n:10000
Cons ci ratio: 1.099325e-01	ci left: 1.065655e-01	ci right 1.190610e-01	k: 1127	n:10000
KS ci ratio: 6.486675e-02	ci left: 2.587439e-01	ci right 2.761918e-01	k: 2674	n:10000
ZNF292   10000 perm   3 sec   (3481 perm/sec)   p_kst 2.674000e-01   p_cons 1.127000e-01   p_joint 1.182000e-01

Joint ci ratio: 7.570759e-02	ci left: 1.137072e-01	ci right 1.227041e-01	k: 2363	n:20000
Cons ci ratio: 7.315137e-02	ci left: 1.209384e-01	ci right 1.301708e-01	k: 2510	n:20000
KS ci ratio: 4.519872e-02	ci left: 2.670823e-01	ci right 2.794836e-01	k: 5465	n:20000
ZNF292   20000 perm   6 sec   (3195 perm/sec)   p_kst 2.732500e-01   p_cons 1.255000e-01   p_joint 1.181500e-01

Outputting figure to mutsig2_images.part000000000196/ZNF292.2_8204_20000_0.27325_0.1255_0.11815.png
                gene_name: ZNF292
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000196
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 196 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1712>
Subject: Job 9878394: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1712>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000197> was used as the working directory.
Started at Fri Oct  5 23:02:55 2012
Results reported at Sat Oct  6 02:10:06 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000197.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000197.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 197  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000197.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  11143.44 sec.
    Max Memory :      2332 MB
    Max Swap   :      4815 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
197
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 197
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 197: processing genes 17772 - 17862
Calculating significance of each gene.
Using projection method.
17772	ZNF410	9.618499e-02
17773	ZNF414	1
17774	ZNF415	1
17775	ZNF416	1
17776	ZNF417	1
17777	ZNF418	1
17778	ZNF419	1
17779	ZNF420	1.531660e-01
17780	ZNF423	5.816322e-02
17781	ZNF425	1
17782	ZNF426	1
17783	ZNF428	1
17784	ZNF429	1
17785	ZNF43	1.850553e-01
17786	ZNF430	1
17787	ZNF431	1
17788	ZNF432	2.048324e-01
17789	ZNF433	1
17790	ZNF434	1
17791	ZNF436	1
17792	ZNF438	1.657390e-01
17793	ZNF439	1
17794	ZNF44	1
17795	ZNF440	1
17796	ZNF441	5.701878e-02
17797	ZNF442	1
17798	ZNF443	1.833137e-01
17799	ZNF445	1
17800	ZNF446	1
17801	ZNF449	1
17802	ZNF45	1
17803	ZNF451	1
17804	ZNF454	1.184968e-01
17805	ZNF460	1
17806	ZNF461	1
17807	ZNF462	1.974730e-01
17808	ZNF467	1
17809	ZNF468	1
17810	ZNF470	1
17811	ZNF471	1
17812	ZNF473	1
17813	ZNF474	1
17814	ZNF479	1
17815	ZNF48	1
17816	ZNF480	1
17817	ZNF483	1
17818	ZNF484	1
In gene ZNF485 the following bins exceed PROBCAP:
    PRAD-G9-6494	categ 6	N = 1314    n = 1	mu =   2.35e-07
17819	ZNF485	5.462736e-03
17820	ZNF486	1
17821	ZNF488	1
17822	ZNF490	1
17823	ZNF491	1
17824	ZNF492	2.037587e-05
17825	ZNF493	1
17826	ZNF496	1
17827	ZNF497	1
17828	ZNF498	1
17829	ZNF500	1.092964e-01
17830	ZNF501	1
17831	ZNF502	1
17832	ZNF503	1
17833	ZNF506	1
17834	ZNF507	1
17835	ZNF510	1
17836	ZNF511	1
17837	ZNF512	1
17838	ZNF512B	1.599256e-01
17839	ZNF513	1
17840	ZNF514	1
17841	ZNF516	2.260085e-01
17842	ZNF517	1.414329e-01
17843	ZNF518A	8.523646e-02
17844	ZNF518B	1
17845	ZNF519	1
17846	ZNF521	2.234099e-01
17847	ZNF524	1
17848	ZNF526	1
17849	ZNF527	1
17850	ZNF528	6.617737e-02
17851	ZNF529	1
17852	ZNF530	1
17853	ZNF532	1
17854	ZNF534	1.278384e-01
17855	ZNF536	9.651013e-03
17856	ZNF540	1
17857	ZNF543	1
17858	ZNF544	1
17859	ZNF546	1
17860	ZNF547	1
17861	ZNF548	1
17862	ZNF549	1
Done

Running MutSig 2:
Scatter job 197: processing genes 17772 - 17862
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ZNF492
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.185349e-01	ci left: 2.774707e-03	ci right 5.327611e-03	k: 39	n:10000
Cons ci ratio: 3.445463e-02	ci left: 5.543135e-01	ci right 5.738491e-01	k: 5641	n:10000
KS ci ratio: 1.481028e+00	ci left: 2.202202e-04	ci right 1.305486e-03	k: 6	n:10000
ZNF492   10000 perm   2 sec   (5510 perm/sec)   p_kst 6.000000e-04   p_cons 5.641000e-01   p_joint 3.900000e-03

Joint ci ratio: 4.710861e-01	ci left: 2.641171e-03	ci right 4.308347e-03	k: 68	n:20000
Cons ci ratio: 2.520018e-02	ci left: 5.405203e-01	ci right 5.543659e-01	k: 10949	n:20000
KS ci ratio: 1.181570e+00	ci left: 2.397946e-04	ci right 9.193249e-04	k: 10	n:20000
ZNF492   20000 perm   7 sec   (2982 perm/sec)   p_kst 5.000000e-04   p_cons 5.474500e-01   p_joint 3.400000e-03

Joint ci ratio: 3.953260e-01	ci left: 2.622774e-03	ci right 3.942989e-03	k: 97	n:30000
Cons ci ratio: 2.047340e-02	ci left: 5.442824e-01	ci right 5.555746e-01	k: 16498	n:30000
KS ci ratio: 1.011870e+00	ci left: 2.551537e-04	ci right 7.828635e-04	k: 14	n:30000
ZNF492   30000 perm   9 sec   (3283 perm/sec)   p_kst 4.666667e-04   p_cons 5.499333e-01   p_joint 3.233333e-03

Joint ci ratio: 4.082129e-01	ci left: 1.832071e-03	ci right 2.792472e-03	k: 91	n:40000
Cons ci ratio: 1.711447e-02	ci left: 5.625025e-01	ci right 5.722377e-01	k: 22695	n:40000
KS ci ratio: 9.797917e-01	ci left: 2.098994e-04	ci right 6.184302e-04	k: 15	n:40000
ZNF492   40000 perm   11 sec   (3480 perm/sec)   p_kst 3.750000e-04   p_cons 5.673750e-01   p_joint 2.275000e-03

Joint ci ratio: 5.189155e-01	ci left: 8.461434e-04	ci right 1.454170e-03	k: 56	n:50000
Cons ci ratio: 1.578515e-02	ci left: 5.478684e-01	ci right 5.566055e-01	k: 27612	n:50000
KS ci ratio: 8.991298e-01	ci left: 2.133723e-04	ci right 5.688958e-04	k: 18	n:50000
ZNF492   50000 perm   14 sec   (3613 perm/sec)   p_kst 3.600000e-04   p_cons 5.522400e-01   p_joint 1.120000e-03

Joint ci ratio: 5.016452e-01	ci left: 7.631894e-04	ci right 1.287013e-03	k: 60	n:60000
Cons ci ratio: 1.441880e-02	ci left: 5.479434e-01	ci right 5.559182e-01	k: 33116	n:60000
KS ci ratio: 8.991598e-01	ci left: 1.778084e-04	ci right 4.740881e-04	k: 18	n:60000
ZNF492   60000 perm   16 sec   (3698 perm/sec)   p_kst 3.000000e-04   p_cons 5.519333e-01   p_joint 1.000000e-03

Joint ci ratio: 5.145043e-01	ci left: 6.167886e-04	ci right 1.054875e-03	k: 57	n:70000
Cons ci ratio: 1.337562e-02	ci left: 5.472633e-01	ci right 5.546468e-01	k: 38567	n:70000
KS ci ratio: 8.764072e-01	ci left: 1.634254e-04	ci right 4.238370e-04	k: 19	n:70000
ZNF492   70000 perm   19 sec   (3751 perm/sec)   p_kst 2.714286e-04   p_cons 5.509571e-01   p_joint 8.142857e-04

Joint ci ratio: 5.716192e-01	ci left: 4.210021e-04	ci right 7.668958e-04	k: 46	n:80000
Cons ci ratio: 1.247092e-02	ci left: 5.491213e-01	ci right 5.560248e-01	k: 44206	n:80000
KS ci ratio: 8.356267e-01	ci left: 1.624987e-04	ci right 4.012313e-04	k: 21	n:80000
ZNF492   80000 perm   21 sec   (3757 perm/sec)   p_kst 2.625000e-04   p_cons 5.525750e-01   p_joint 5.750000e-04

Joint ci ratio: 5.284082e-01	ci left: 4.507696e-04	ci right 7.827983e-04	k: 54	n:90000
Cons ci ratio: 1.176637e-02	ci left: 5.489552e-01	ci right 5.554637e-01	k: 49699	n:90000
KS ci ratio: 7.686599e-01	ci left: 1.797709e-04	ci right 4.100277e-04	k: 25	n:90000
ZNF492   90000 perm   24 sec   (3750 perm/sec)   p_kst 2.777778e-04   p_cons 5.522111e-01   p_joint 6.000000e-04

Joint ci ratio: 1.934338e-01	ci left: 3.694357e-03	ci right 4.494828e-03	k: 408	n:100000
Cons ci ratio: 1.116306e-02	ci left: 5.491015e-01	ci right 5.552755e-01	k: 55219	n:100000
KS ci ratio: 7.039401e-01	ci left: 2.024176e-04	ci right 4.282412e-04	k: 30	n:100000
ZNF492   100000 perm   27 sec   (3751 perm/sec)   p_kst 3.000000e-04   p_cons 5.521900e-01   p_joint 4.080000e-03

Joint ci ratio: 2.181321e-01	ci left: 2.608038e-03	ci right 3.254975e-03	k: 321	n:110000
Cons ci ratio: 1.029947e-02	ci left: 5.654485e-01	ci right 5.713115e-01	k: 62522	n:110000
KS ci ratio: 6.928607e-01	ci left: 1.914896e-04	ci right 3.999948e-04	k: 31	n:110000
ZNF492   110000 perm   29 sec   (3741 perm/sec)   p_kst 2.818182e-04   p_cons 5.683818e-01   p_joint 2.918182e-03

Joint ci ratio: 2.098283e-01	ci left: 2.595758e-03	ci right 3.211988e-03	k: 347	n:120000
Cons ci ratio: 9.854771e-03	ci left: 5.658837e-01	ci right 5.714963e-01	k: 68243	n:120000
KS ci ratio: 6.822877e-01	ci left: 1.824067e-04	ci right 3.764331e-04	k: 32	n:120000
ZNF492   120000 perm   32 sec   (3719 perm/sec)   p_kst 2.666667e-04   p_cons 5.686917e-01   p_joint 2.891667e-03

Joint ci ratio: 2.054584e-01	ci left: 2.505457e-03	ci right 3.086305e-03	k: 362	n:130000
Cons ci ratio: 9.472013e-03	ci left: 5.657946e-01	ci right 5.711870e-01	k: 73904	n:130000
KS ci ratio: 6.721840e-01	ci left: 1.747423e-04	ci right 3.564761e-04	k: 33	n:130000
ZNF492   130000 perm   35 sec   (3670 perm/sec)   p_kst 2.538462e-04   p_cons 5.684923e-01   p_joint 2.784615e-03

Joint ci ratio: 2.040747e-01	ci left: 2.360360e-03	ci right 2.903423e-03	k: 367	n:140000
Cons ci ratio: 9.126526e-03	ci left: 5.659435e-01	ci right 5.711394e-01	k: 79596	n:140000
KS ci ratio: 6.121093e-01	ci left: 2.041261e-04	ci right 3.890417e-04	k: 40	n:140000
ZNF492   140000 perm   39 sec   (3621 perm/sec)   p_kst 2.857143e-04   p_cons 5.685429e-01   p_joint 2.621429e-03

Joint ci ratio: 2.029897e-01	ci left: 2.228295e-03	ci right 2.737907e-03	k: 371	n:150000
Cons ci ratio: 8.822870e-03	ci left: 5.657087e-01	ci right 5.707286e-01	k: 85233	n:150000
KS ci ratio: 5.908736e-01	ci left: 2.074696e-04	ci right 3.861189e-04	k: 43	n:150000
ZNF492   150000 perm   42 sec   (3591 perm/sec)   p_kst 2.866667e-04   p_cons 5.682200e-01   p_joint 2.473333e-03

Joint ci ratio: 2.013841e-01	ci left: 2.124616e-03	ci right 2.606200e-03	k: 377	n:160000
Cons ci ratio: 8.547522e-03	ci left: 5.655122e-01	ci right 5.703729e-01	k: 90871	n:160000
KS ci ratio: 5.778876e-01	ci left: 2.051528e-04	ci right 3.763167e-04	k: 45	n:160000
ZNF492   160000 perm   45 sec   (3541 perm/sec)   p_kst 2.812500e-04   p_cons 5.679437e-01   p_joint 2.356250e-03

Joint ci ratio: 1.992955e-01	ci left: 2.044328e-03	ci right 2.502322e-03	k: 385	n:170000
Cons ci ratio: 8.299023e-03	ci left: 5.651880e-01	ci right 5.699038e-01	k: 96483	n:170000
KS ci ratio: 5.383679e-01	ci left: 2.284557e-04	ci right 4.011049e-04	k: 52	n:170000
ZNF492   170000 perm   49 sec   (3501 perm/sec)   p_kst 3.058824e-04   p_cons 5.675471e-01   p_joint 2.264706e-03

Joint ci ratio: 1.970195e-01	ci left: 1.978267e-03	ci right 2.415791e-03	k: 394	n:180000
Cons ci ratio: 8.063421e-03	ci left: 5.653631e-01	ci right 5.699458e-01	k: 102178	n:180000
KS ci ratio: 5.191330e-01	ci left: 2.350183e-04	ci right 4.039849e-04	k: 56	n:180000
ZNF492   180000 perm   52 sec   (3452 perm/sec)   p_kst 3.111111e-04   p_cons 5.676556e-01   p_joint 2.188889e-03

Joint ci ratio: 2.300140e-01	ci left: 1.350836e-03	ci right 1.706756e-03	k: 289	n:190000
Cons ci ratio: 7.847650e-03	ci left: 5.654688e-01	ci right 5.699291e-01	k: 107863	n:190000
KS ci ratio: 4.977580e-01	ci left: 2.455884e-04	ci right 4.123867e-04	k: 61	n:190000
ZNF492   190000 perm   56 sec   (3394 perm/sec)   p_kst 3.210526e-04   p_cons 5.677000e-01   p_joint 1.521053e-03

Joint ci ratio: 2.272920e-01	ci left: 1.316287e-03	ci right 1.658424e-03	k: 296	n:200000
Cons ci ratio: 7.650270e-03	ci left: 5.654404e-01	ci right 5.697877e-01	k: 113523	n:200000
KS ci ratio: 4.752878e-01	ci left: 2.596295e-04	ci right 4.254189e-04	k: 67	n:200000
ZNF492   200000 perm   60 sec   (3342 perm/sec)   p_kst 3.350000e-04   p_cons 5.676150e-01   p_joint 1.480000e-03

Joint ci ratio: 2.214058e-01	ci left: 1.325516e-03	ci right 1.659915e-03	k: 312	n:210000
Cons ci ratio: 7.460916e-03	ci left: 5.658209e-01	ci right 5.700629e-01	k: 119268	n:210000
KS ci ratio: 4.556094e-01	ci left: 2.724874e-04	ci right 4.370592e-04	k: 73	n:210000
ZNF492   210000 perm   63 sec   (3308 perm/sec)   p_kst 3.476190e-04   p_cons 5.679429e-01   p_joint 1.485714e-03

Joint ci ratio: 2.172813e-01	ci left: 1.316814e-03	ci right 1.642003e-03	k: 324	n:220000
Cons ci ratio: 7.287519e-03	ci left: 5.659951e-01	ci right 5.701394e-01	k: 124975	n:220000
KS ci ratio: 4.328099e-01	ci left: 2.923999e-04	ci right 4.575959e-04	k: 81	n:220000
ZNF492   220000 perm   67 sec   (3277 perm/sec)   p_kst 3.681818e-04   p_cons 5.680682e-01   p_joint 1.472727e-03

Joint ci ratio: 2.273141e-01	ci left: 1.144585e-03	ci right 1.442124e-03	k: 296	n:230000
Cons ci ratio: 7.124032e-03	ci left: 5.662684e-01	ci right 5.703212e-01	k: 130708	n:230000
KS ci ratio: 4.251042e-01	ci left: 2.913218e-04	ci right 4.521443e-04	k: 84	n:230000
ZNF492   230000 perm   71 sec   (3246 perm/sec)   p_kst 3.652174e-04   p_cons 5.682957e-01   p_joint 1.286957e-03

Joint ci ratio: 2.232189e-01	ci left: 1.140141e-03	ci right 1.430452e-03	k: 307	n:240000
Cons ci ratio: 6.972436e-03	ci left: 5.664239e-01	ci right 5.703911e-01	k: 136418	n:240000
KS ci ratio: 4.177959e-01	ci left: 2.903575e-04	ci right 4.471235e-04	k: 87	n:240000
ZNF492   240000 perm   75 sec   (3215 perm/sec)   p_kst 3.625000e-04   p_cons 5.684083e-01   p_joint 1.279167e-03

Joint ci ratio: 2.292662e-01	ci left: 1.034155e-03	ci right 1.305622e-03	k: 291	n:250000
Cons ci ratio: 6.828730e-03	ci left: 5.666678e-01	ci right 5.705546e-01	k: 142153	n:250000
KS ci ratio: 4.108520e-01	ci left: 2.894921e-04	ci right 4.424829e-04	k: 90	n:250000
ZNF492   250000 perm   78 sec   (3185 perm/sec)   p_kst 3.600000e-04   p_cons 5.686120e-01   p_joint 1.164000e-03

Joint ci ratio: 2.379985e-01	ci left: 9.183298e-04	ci right 1.169929e-03	k: 270	n:260000
Cons ci ratio: 6.921548e-03	ci left: 5.503861e-01	ci right 5.542127e-01	k: 143598	n:260000
KS ci ratio: 4.000087e-01	ci left: 2.956277e-04	ci right 4.466456e-04	k: 95	n:260000
ZNF492   260000 perm   82 sec   (3152 perm/sec)   p_kst 3.653846e-04   p_cons 5.523000e-01   p_joint 1.038462e-03

Joint ci ratio: 2.320777e-01	ci left: 9.331174e-04	ci right 1.181496e-03	k: 284	n:270000
Cons ci ratio: 6.568037e-03	ci left: 5.669590e-01	ci right 5.706988e-01	k: 153584	n:270000
KS ci ratio: 3.919267e-01	ci left: 2.980183e-04	ci right 4.463857e-04	k: 99	n:270000
ZNF492   270000 perm   86 sec   (3122 perm/sec)   p_kst 3.666667e-04   p_cons 5.688296e-01   p_joint 1.051852e-03

Joint ci ratio: 2.300707e-01	ci left: 9.166143e-04	ci right 1.158191e-03	k: 289	n:280000
Cons ci ratio: 6.449981e-03	ci left: 5.669703e-01	ci right 5.706426e-01	k: 159266	n:280000
KS ci ratio: 3.919293e-01	ci left: 2.873744e-04	ci right 4.304440e-04	k: 99	n:280000
ZNF492   280000 perm   91 sec   (3092 perm/sec)   p_kst 3.535714e-04   p_cons 5.688071e-01   p_joint 1.032143e-03

Joint ci ratio: 2.258274e-01	ci left: 9.207724e-04	ci right 1.158346e-03	k: 300	n:290000
Cons ci ratio: 6.341546e-03	ci left: 5.667122e-01	ci right 5.703209e-01	k: 164870	n:290000
KS ci ratio: 3.806738e-01	ci left: 2.961458e-04	ci right 4.382898e-04	k: 105	n:290000
ZNF492   290000 perm   95 sec   (3063 perm/sec)   p_kst 3.620690e-04   p_cons 5.685172e-01   p_joint 1.034483e-03

Joint ci ratio: 1.515001e-01	ci left: 2.057950e-03	ci right 2.398446e-03	k: 667	n:300000
Cons ci ratio: 6.233738e-03	ci left: 5.668387e-01	ci right 5.703866e-01	k: 170584	n:300000
KS ci ratio: 3.736882e-01	ci left: 2.983437e-04	ci right 4.382717e-04	k: 109	n:300000
ZNF492   300000 perm   99 sec   (3030 perm/sec)   p_kst 3.633333e-04   p_cons 5.686133e-01   p_joint 2.223333e-03

Joint ci ratio: 1.500494e-01	ci left: 2.031916e-03	ci right 2.364596e-03	k: 680	n:310000
Cons ci ratio: 6.135077e-03	ci left: 5.666510e-01	ci right 5.701413e-01	k: 176203	n:310000
KS ci ratio: 3.703377e-01	ci left: 2.945680e-04	ci right 4.311863e-04	k: 111	n:310000
ZNF492   310000 perm   103 sec   (2999 perm/sec)   p_kst 3.580645e-04   p_cons 5.683968e-01   p_joint 2.193548e-03

Joint ci ratio: 1.479997e-01	ci left: 2.025579e-03	ci right 2.352291e-03	k: 699	n:320000
Cons ci ratio: 6.039456e-03	ci left: 5.665973e-01	ci right 5.700327e-01	k: 181861	n:320000
KS ci ratio: 3.670757e-01	ci left: 2.910336e-04	ci right 4.245385e-04	k: 113	n:320000
ZNF492   320000 perm   108 sec   (2968 perm/sec)   p_kst 3.531250e-04   p_cons 5.683156e-01   p_joint 2.184375e-03

Joint ci ratio: 1.490755e-01	ci left: 1.935015e-03	ci right 2.249589e-03	k: 689	n:330000
Cons ci ratio: 5.947361e-03	ci left: 5.666140e-01	ci right 5.699969e-01	k: 187541	n:330000
KS ci ratio: 3.608002e-01	ci left: 2.932273e-04	ci right 4.248985e-04	k: 117	n:330000
ZNF492   330000 perm   112 sec   (2935 perm/sec)   p_kst 3.545455e-04   p_cons 5.683061e-01   p_joint 2.087879e-03

Joint ci ratio: 1.517478e-01	ci left: 1.810162e-03	ci right 2.110193e-03	k: 665	n:340000
Cons ci ratio: 5.857986e-03	ci left: 5.667449e-01	ci right 5.700775e-01	k: 193260	n:340000
KS ci ratio: 3.720086e-01	ci left: 2.659091e-04	ci right 3.899275e-04	k: 110	n:340000
ZNF492   340000 perm   117 sec   (2903 perm/sec)   p_kst 3.235294e-04   p_cons 5.684118e-01   p_joint 1.955882e-03

Joint ci ratio: 1.539684e-01	ci left: 1.706226e-03	ci right 1.993550e-03	k: 646	n:350000
Cons ci ratio: 5.773396e-03	ci left: 5.667943e-01	ci right 5.700789e-01	k: 198953	n:350000
KS ci ratio: 3.670813e-01	ci left: 2.660872e-04	ci right 3.881507e-04	k: 113	n:350000
ZNF492   350000 perm   122 sec   (2871 perm/sec)   p_kst 3.228571e-04   p_cons 5.684371e-01   p_joint 1.845714e-03

Joint ci ratio: 1.597664e-01	ci left: 1.536056e-03	ci right 1.805400e-03	k: 600	n:360000
Cons ci ratio: 5.696139e-03	ci left: 5.665161e-01	ci right 5.697550e-01	k: 204529	n:360000
KS ci ratio: 3.243553e-01	ci left: 3.398987e-04	ci right 4.739132e-04	k: 145	n:360000
ZNF492   360000 perm   127 sec   (2839 perm/sec)   p_kst 4.027778e-04   p_cons 5.681361e-01   p_joint 1.666667e-03

Joint ci ratio: 1.290776e-01	ci left: 2.325955e-03	ci right 2.649483e-03	k: 919	n:370000
Cons ci ratio: 5.619144e-03	ci left: 5.664939e-01	ci right 5.696888e-01	k: 210194	n:370000
KS ci ratio: 3.232515e-01	ci left: 3.331951e-04	ci right 4.640267e-04	k: 146	n:370000
ZNF492   370000 perm   133 sec   (2776 perm/sec)   p_kst 3.945946e-04   p_cons 5.680919e-01   p_joint 2.483784e-03

Joint ci ratio: 1.276979e-01	ci left: 2.315686e-03	ci right 2.634082e-03	k: 939	n:380000
Cons ci ratio: 5.545308e-03	ci left: 5.664627e-01	ci right 5.696152e-01	k: 215855	n:380000
KS ci ratio: 3.200031e-01	ci left: 3.316842e-04	ci right 4.603454e-04	k: 149	n:380000
ZNF492   380000 perm   140 sec   (2713 perm/sec)   p_kst 3.921053e-04   p_cons 5.680395e-01   p_joint 2.471053e-03

Joint ci ratio: 1.358382e-01	ci left: 1.986003e-03	ci right 2.277883e-03	k: 830	n:390000
Cons ci ratio: 5.472620e-03	ci left: 5.665847e-01	ci right 5.696964e-01	k: 221575	n:390000
KS ci ratio: 3.168506e-01	ci left: 3.302570e-04	ci right 4.568468e-04	k: 152	n:390000
ZNF492   390000 perm   146 sec   (2671 perm/sec)   p_kst 3.897436e-04   p_cons 5.681410e-01   p_joint 2.128205e-03

Joint ci ratio: 1.395952e-01	ci left: 1.830132e-03	ci right 2.107162e-03	k: 786	n:400000
Cons ci ratio: 5.404452e-03	ci left: 5.665432e-01	ci right 5.696158e-01	k: 227232	n:400000
KS ci ratio: 3.127883e-01	ci left: 3.312106e-04	ci right 4.562131e-04	k: 156	n:400000
ZNF492   400000 perm   152 sec   (2639 perm/sec)   p_kst 3.900000e-04   p_cons 5.680800e-01   p_joint 1.965000e-03

Joint ci ratio: 1.410424e-01	ci left: 1.747835e-03	ci right 2.015381e-03	k: 770	n:410000
Cons ci ratio: 5.338557e-03	ci left: 5.665235e-01	ci right 5.695584e-01	k: 232897	n:410000
KS ci ratio: 3.060390e-01	ci left: 3.388804e-04	ci right 4.634801e-04	k: 163	n:410000
ZNF492   410000 perm   157 sec   (2606 perm/sec)   p_kst 3.975610e-04   p_cons 5.680415e-01   p_joint 1.878049e-03

Joint ci ratio: 1.388963e-01	ci left: 1.761362e-03	ci right 2.026537e-03	k: 794	n:420000
Cons ci ratio: 5.274323e-03	ci left: 5.665693e-01	ci right 5.695678e-01	k: 238589	n:420000
KS ci ratio: 3.032780e-01	ci left: 3.374086e-04	ci right 4.601321e-04	k: 166	n:420000
ZNF492   420000 perm   163 sec   (2576 perm/sec)   p_kst 3.952381e-04   p_cons 5.680690e-01   p_joint 1.890476e-03

Joint ci ratio: 1.376900e-01	ci left: 1.751832e-03	ci right 2.013093e-03	k: 808	n:430000
Cons ci ratio: 5.213318e-03	ci left: 5.665225e-01	ci right 5.694859e-01	k: 244242	n:430000
KS ci ratio: 3.032794e-01	ci left: 3.295617e-04	ci right 4.494317e-04	k: 166	n:430000
ZNF492   430000 perm   169 sec   (2546 perm/sec)   p_kst 3.860465e-04   p_cons 5.680047e-01   p_joint 1.879070e-03

Joint ci ratio: 1.361834e-01	ci left: 1.751525e-03	ci right 2.009651e-03	k: 826	n:440000
Cons ci ratio: 5.154071e-03	ci left: 5.665075e-01	ci right 5.694371e-01	k: 249908	n:440000
KS ci ratio: 3.014802e-01	ci left: 3.262722e-04	ci right 4.441068e-04	k: 168	n:440000
ZNF492   440000 perm   174 sec   (2527 perm/sec)   p_kst 3.818182e-04   p_cons 5.679727e-01   p_joint 1.877273e-03

Joint ci ratio: 1.349655e-01	ci left: 1.744804e-03	ci right 1.999456e-03	k: 841	n:450000
Cons ci ratio: 5.095783e-03	ci left: 5.665912e-01	ci right 5.694880e-01	k: 255618	n:450000
KS ci ratio: 2.979745e-01	ci left: 3.272423e-04	ci right 4.437930e-04	k: 172	n:450000
ZNF492   450000 perm   180 sec   (2505 perm/sec)   p_kst 3.822222e-04   p_cons 5.680400e-01   p_joint 1.868889e-03

Joint ci ratio: 1.556986e-01	ci left: 1.268937e-03	ci right 1.485247e-03	k: 632	n:460000
Cons ci ratio: 5.038715e-03	ci left: 5.667410e-01	ci right 5.696060e-01	k: 261360	n:460000
KS ci ratio: 2.945882e-01	ci left: 3.281778e-04	ci right 4.434854e-04	k: 176	n:460000
ZNF492   460000 perm   185 sec   (2483 perm/sec)   p_kst 3.826087e-04   p_cons 5.681739e-01   p_joint 1.373913e-03

Joint ci ratio: 1.541241e-01	ci left: 1.268526e-03	ci right 1.482377e-03	k: 645	n:470000
Cons ci ratio: 4.984018e-03	ci left: 5.668356e-01	ci right 5.696699e-01	k: 267079	n:470000
KS ci ratio: 2.905132e-01	ci left: 3.310531e-04	ci right 4.454661e-04	k: 181	n:470000
ZNF492   470000 perm   191 sec   (2456 perm/sec)   p_kst 3.851064e-04   p_cons 5.682532e-01   p_joint 1.372340e-03

Joint ci ratio: 1.289741e-01	ci left: 1.796924e-03	ci right 2.046649e-03	k: 921	n:480000
Cons ci ratio: 4.932908e-03	ci left: 5.667431e-01	ci right 5.695477e-01	k: 272710	n:480000
KS ci ratio: 2.850816e-01	ci left: 3.376872e-04	ci right 4.518184e-04	k: 188	n:480000
ZNF492   480000 perm   198 sec   (2428 perm/sec)   p_kst 3.916667e-04   p_cons 5.681458e-01   p_joint 1.918750e-03

Joint ci ratio: 1.299690e-01	ci left: 1.732602e-03	ci right 1.975389e-03	k: 907	n:490000
Cons ci ratio: 4.880657e-03	ci left: 5.669240e-01	ci right 5.696997e-01	k: 278473	n:490000
KS ci ratio: 2.813836e-01	ci left: 3.402750e-04	ci right 4.535244e-04	k: 193	n:490000
ZNF492   490000 perm   204 sec   (2403 perm/sec)   p_kst 3.938776e-04   p_cons 5.683122e-01   p_joint 1.851020e-03

Joint ci ratio: 1.287694e-01	ci left: 1.730850e-03	ci right 1.970981e-03	k: 924	n:500000
Cons ci ratio: 4.832040e-03	ci left: 5.668937e-01	ci right 5.696415e-01	k: 284134	n:500000
KS ci ratio: 2.792331e-01	ci left: 3.390478e-04	ci right 4.508747e-04	k: 196	n:500000
ZNF492   500000 perm   210 sec   (2381 perm/sec)   p_kst 3.920000e-04   p_cons 5.682680e-01   p_joint 1.848000e-03

Joint ci ratio: 1.272644e-01	ci left: 1.738668e-03	ci right 1.976852e-03	k: 946	n:510000
Cons ci ratio: 4.784943e-03	ci left: 5.668549e-01	ci right 5.695757e-01	k: 289790	n:510000
KS ci ratio: 2.771312e-01	ci left: 3.378718e-04	ci right 4.483257e-04	k: 199	n:510000
ZNF492   510000 perm   216 sec   (2362 perm/sec)   p_kst 3.901961e-04   p_cons 5.682157e-01   p_joint 1.854902e-03

Joint ci ratio: 1.269983e-01	ci left: 1.712678e-03	ci right 1.946774e-03	k: 950	n:520000
Cons ci ratio: 4.736987e-03	ci left: 5.670467e-01	ci right 5.697410e-01	k: 295565	n:520000
KS ci ratio: 2.757564e-01	ci left: 3.349538e-04	ci right 4.438162e-04	k: 201	n:520000
ZNF492   520000 perm   223 sec   (2337 perm/sec)   p_kst 3.865385e-04   p_cons 5.683942e-01   p_joint 1.826923e-03

Joint ci ratio: 1.305556e-01	ci left: 1.587230e-03	ci right 1.810727e-03	k: 899	n:530000
Cons ci ratio: 4.692878e-03	ci left: 5.669765e-01	ci right 5.696454e-01	k: 301205	n:530000
KS ci ratio: 2.737315e-01	ci left: 3.339044e-04	ci right 4.414917e-04	k: 204	n:530000
ZNF492   530000 perm   229 sec   (2314 perm/sec)   p_kst 3.849057e-04   p_cons 5.683113e-01   p_joint 1.696226e-03

Joint ci ratio: 1.301239e-01	ci left: 1.568584e-03	ci right 1.788669e-03	k: 905	n:540000
Cons ci ratio: 4.648997e-03	ci left: 5.670128e-01	ci right 5.696568e-01	k: 306901	n:540000
KS ci ratio: 2.730670e-01	ci left: 3.294458e-04	ci right 4.352946e-04	k: 205	n:540000
ZNF492   540000 perm   236 sec   (2292 perm/sec)   p_kst 3.796296e-04   p_cons 5.683352e-01   p_joint 1.675926e-03

Joint ci ratio: 1.288500e-01	ci left: 1.571732e-03	ci right 1.789935e-03	k: 923	n:550000
Cons ci ratio: 4.605897e-03	ci left: 5.670934e-01	ci right 5.697132e-01	k: 312622	n:550000
KS ci ratio: 2.679133e-01	ci left: 3.370152e-04	ci right 4.429093e-04	k: 213	n:550000
ZNF492   550000 perm   242 sec   (2272 perm/sec)   p_kst 3.872727e-04   p_cons 5.684036e-01   p_joint 1.678182e-03

Joint ci ratio: 1.278852e-01	ci left: 1.567862e-03	ci right 1.783774e-03	k: 937	n:560000
Cons ci ratio: 4.565037e-03	ci left: 5.670569e-01	ci right 5.696532e-01	k: 318279	n:560000
KS ci ratio: 2.654440e-01	ci left: 3.376625e-04	ci right 4.426195e-04	k: 217	n:560000
ZNF492   560000 perm   248 sec   (2254 perm/sec)   p_kst 3.875000e-04   p_cons 5.683554e-01   p_joint 1.673214e-03

Joint ci ratio: 1.266091e-01	ci left: 1.572628e-03	ci right 1.786874e-03	k: 956	n:570000
Cons ci ratio: 4.523676e-03	ci left: 5.671919e-01	ci right 5.697653e-01	k: 324033	n:570000
KS ci ratio: 2.648379e-01	ci left: 3.333762e-04	ci right 4.367251e-04	k: 218	n:570000
ZNF492   570000 perm   255 sec   (2237 perm/sec)   p_kst 3.824561e-04   p_cons 5.684789e-01   p_joint 1.677193e-03

Joint ci ratio: 1.262809e-01	ci left: 1.553861e-03	ci right 1.764960e-03	k: 961	n:580000
Cons ci ratio: 4.484554e-03	ci left: 5.671983e-01	ci right 5.697493e-01	k: 329715	n:580000
KS ci ratio: 2.601284e-01	ci left: 3.405142e-04	ci right 4.438936e-04	k: 226	n:580000
ZNF492   580000 perm   261 sec   (2218 perm/sec)   p_kst 3.896552e-04   p_cons 5.684741e-01   p_joint 1.656897e-03

Joint ci ratio: 1.956888e-01	ci left: 6.131656e-04	ci right 7.477479e-04	k: 400	n:590000
Cons ci ratio: 4.446782e-03	ci left: 5.671655e-01	ci right 5.696948e-01	k: 335374	n:590000
KS ci ratio: 2.962799e-01	ci left: 2.527273e-04	ci right 3.421303e-04	k: 174	n:590000
ZNF492   590000 perm   268 sec   (2198 perm/sec)   p_kst 2.949153e-04   p_cons 5.684305e-01   p_joint 6.779661e-04

Joint ci ratio: 1.932929e-01	ci left: 6.188015e-04	ci right 7.527624e-04	k: 410	n:600000
Cons ci ratio: 4.410653e-03	ci left: 5.670556e-01	ci right 5.695638e-01	k: 340986	n:600000
KS ci ratio: 2.913271e-01	ci left: 2.577784e-04	ci right 3.471629e-04	k: 180	n:600000
ZNF492   600000 perm   275 sec   (2181 perm/sec)   p_kst 3.000000e-04   p_cons 5.683100e-01   p_joint 6.833333e-04

Joint ci ratio: 1.930592e-01	ci left: 6.102170e-04	ci right 7.421409e-04	k: 411	n:610000
Cons ci ratio: 4.374893e-03	ci left: 5.670050e-01	ci right 5.694927e-01	k: 346632	n:610000
KS ci ratio: 2.905261e-01	ci left: 2.550722e-04	ci right 3.432304e-04	k: 181	n:610000
ZNF492   610000 perm   282 sec   (2160 perm/sec)   p_kst 2.967213e-04   p_cons 5.682492e-01   p_joint 6.737705e-04

Joint ci ratio: 1.952055e-01	ci left: 5.865635e-04	ci right 7.149511e-04	k: 402	n:620000
Cons ci ratio: 4.339304e-03	ci left: 5.670337e-01	ci right 5.695012e-01	k: 352326	n:620000
KS ci ratio: 2.897317e-01	ci left: 2.524536e-04	ci right 3.394244e-04	k: 182	n:620000
ZNF492   620000 perm   290 sec   (2140 perm/sec)   p_kst 2.935484e-04   p_cons 5.682677e-01   p_joint 6.483871e-04

Joint ci ratio: 1.937684e-01	ci left: 5.863130e-04	ci right 7.135896e-04	k: 408	n:630000
Cons ci ratio: 4.304612e-03	ci left: 5.670568e-01	ci right 5.695045e-01	k: 358017	n:630000
KS ci ratio: 2.873857e-01	ci left: 2.528637e-04	ci right 3.391423e-04	k: 185	n:630000
ZNF492   630000 perm   299 sec   (2105 perm/sec)   p_kst 2.936508e-04   p_cons 5.682810e-01   p_joint 6.476190e-04

Joint ci ratio: 1.919005e-01	ci left: 5.890485e-04	ci right 7.155424e-04	k: 416	n:640000
Cons ci ratio: 4.271541e-03	ci left: 5.669869e-01	ci right 5.694156e-01	k: 363649	n:640000
KS ci ratio: 2.821250e-01	ci left: 2.590694e-04	ci right 3.455595e-04	k: 192	n:640000
ZNF492   640000 perm   307 sec   (2085 perm/sec)   p_kst 3.000000e-04   p_cons 5.682016e-01   p_joint 6.500000e-04

Joint ci ratio: 1.900856e-01	ci left: 5.917055e-04	ci right 7.174295e-04	k: 424	n:650000
Cons ci ratio: 4.240058e-03	ci left: 5.668224e-01	ci right 5.692324e-01	k: 369218	n:650000
KS ci ratio: 2.799576e-01	ci left: 2.593738e-04	ci right 3.451830e-04	k: 195	n:650000
ZNF492   650000 perm   314 sec   (2069 perm/sec)   p_kst 3.000000e-04   p_cons 5.680277e-01   p_joint 6.523077e-04

Joint ci ratio: 1.891977e-01	ci left: 5.885130e-04	ci right 7.129075e-04	k: 428	n:660000
Cons ci ratio: 4.208363e-03	ci left: 5.667675e-01	ci right 5.691592e-01	k: 374856	n:660000
KS ci ratio: 2.785403e-01	ci left: 2.582620e-04	ci right 3.431950e-04	k: 197	n:660000
ZNF492   660000 perm   322 sec   (2052 perm/sec)   p_kst 2.984848e-04   p_cons 5.679636e-01   p_joint 6.484848e-04

Joint ci ratio: 1.885401e-01	ci left: 5.839950e-04	ci right 7.069563e-04	k: 431	n:670000
Cons ci ratio: 4.176758e-03	ci left: 5.667860e-01	ci right 5.691597e-01	k: 380542	n:670000
KS ci ratio: 2.778400e-01	ci left: 2.557958e-04	ci right 3.396691e-04	k: 198	n:670000
ZNF492   670000 perm   329 sec   (2036 perm/sec)   p_kst 2.955224e-04   p_cons 5.679731e-01   p_joint 6.432836e-04

Joint ci ratio: 1.885410e-01	ci left: 5.754066e-04	ci right 6.965602e-04	k: 431	n:680000
Cons ci ratio: 4.146017e-03	ci left: 5.667848e-01	ci right 5.691411e-01	k: 386215	n:680000
KS ci ratio: 2.737432e-01	ci left: 2.602476e-04	ci right 3.441060e-04	k: 204	n:680000
ZNF492   680000 perm   336 sec   (2021 perm/sec)   p_kst 3.000000e-04   p_cons 5.679632e-01   p_joint 6.338235e-04

Joint ci ratio: 1.407314e-01	ci left: 1.044135e-03	ci right 1.203580e-03	k: 774	n:690000
Cons ci ratio: 4.115774e-03	ci left: 5.668041e-01	ci right 5.691432e-01	k: 391902	n:690000
KS ci ratio: 2.704643e-01	ci left: 2.632280e-04	ci right 3.468584e-04	k: 209	n:690000
ZNF492   690000 perm   344 sec   (2004 perm/sec)   p_kst 3.028986e-04   p_cons 5.679739e-01   p_joint 1.121739e-03

Joint ci ratio: 1.399215e-01	ci left: 1.041624e-03	ci right 1.199694e-03	k: 783	n:700000
Cons ci ratio: 4.085744e-03	ci left: 5.668757e-01	ci right 5.691980e-01	k: 397626	n:700000
KS ci ratio: 2.698231e-01	ci left: 2.607994e-04	ci right 3.434284e-04	k: 210	n:700000
ZNF492   700000 perm   352 sec   (1989 perm/sec)   p_kst 3.000000e-04   p_cons 5.680371e-01   p_joint 1.118571e-03

Joint ci ratio: 1.388627e-01	ci left: 1.043265e-03	ci right 1.200287e-03	k: 795	n:710000
Cons ci ratio: 4.056757e-03	ci left: 5.668975e-01	ci right 5.692033e-01	k: 403316	n:710000
KS ci ratio: 2.679251e-01	ci left: 2.610667e-04	ci right 3.431009e-04	k: 213	n:710000
ZNF492   710000 perm   360 sec   (1972 perm/sec)   p_kst 3.000000e-04   p_cons 5.680507e-01   p_joint 1.119718e-03

Joint ci ratio: 1.377423e-01	ci left: 1.046206e-03	ci right 1.202296e-03	k: 808	n:720000
Cons ci ratio: 4.028333e-03	ci left: 5.669243e-01	ci right 5.692140e-01	k: 409010	n:720000
KS ci ratio: 2.654555e-01	ci left: 2.626249e-04	ci right 3.442617e-04	k: 217	n:720000
ZNF492   720000 perm   368 sec   (1955 perm/sec)   p_kst 3.013889e-04   p_cons 5.680694e-01   p_joint 1.122222e-03

Joint ci ratio: 1.363996e-01	ci left: 1.053041e-03	ci right 1.208495e-03	k: 824	n:730000
Cons ci ratio: 4.000531e-03	ci left: 5.669463e-01	ci right 5.692203e-01	k: 414701	n:730000
KS ci ratio: 2.636476e-01	ci left: 2.628644e-04	ci right 3.439273e-04	k: 220	n:730000
ZNF492   730000 perm   377 sec   (1937 perm/sec)   p_kst 3.013699e-04   p_cons 5.680836e-01   p_joint 1.128767e-03

Joint ci ratio: 1.370676e-01	ci left: 1.028369e-03	ci right 1.180985e-03	k: 816	n:740000
Cons ci ratio: 3.973243e-03	ci left: 5.669745e-01	ci right 5.692331e-01	k: 420397	n:740000
KS ci ratio: 2.630535e-01	ci left: 2.605743e-04	ci right 3.407200e-04	k: 221	n:740000
ZNF492   740000 perm   385 sec   (1922 perm/sec)   p_kst 2.986486e-04   p_cons 5.681041e-01   p_joint 1.102703e-03

Joint ci ratio: 1.467353e-01	ci left: 8.809031e-04	ci right 1.021664e-03	k: 712	n:750000
Cons ci ratio: 3.946580e-03	ci left: 5.669927e-01	ci right 5.692361e-01	k: 426086	n:750000
KS ci ratio: 2.612940e-01	ci left: 2.608371e-04	ci right 3.404394e-04	k: 224	n:750000
ZNF492   750000 perm   394 sec   (1903 perm/sec)   p_kst 2.986667e-04   p_cons 5.681147e-01   p_joint 9.493333e-04

Joint ci ratio: 1.476720e-01	ci left: 8.579056e-04	ci right 9.959440e-04	k: 703	n:760000
Cons ci ratio: 3.920479e-03	ci left: 5.670065e-01	ci right 5.692351e-01	k: 431772	n:760000
KS ci ratio: 2.607156e-01	ci left: 2.586347e-04	ci right 3.373616e-04	k: 225	n:760000
ZNF492   760000 perm   404 sec   (1880 perm/sec)   p_kst 2.960526e-04   p_cons 5.681211e-01   p_joint 9.250000e-04

Joint ci ratio: 1.472548e-01	ci left: 8.517669e-04	ci right 9.883962e-04	k: 707	n:770000
Cons ci ratio: 3.894920e-03	ci left: 5.670161e-01	ci right 5.692301e-01	k: 437455	n:770000
KS ci ratio: 2.595697e-01	ci left: 2.577039e-04	ci right 3.357467e-04	k: 227	n:770000
ZNF492   770000 perm   415 sec   (1855 perm/sec)   p_kst 2.948052e-04   p_cons 5.681234e-01   p_joint 9.181818e-04

Joint ci ratio: 1.465324e-01	ci left: 8.494912e-04	ci right 9.850286e-04	k: 714	n:780000
Cons ci ratio: 3.868742e-03	ci left: 5.671666e-01	ci right 5.693663e-01	k: 443248	n:780000
KS ci ratio: 2.595702e-01	ci left: 2.543999e-04	ci right 3.314424e-04	k: 227	n:780000
ZNF492   780000 perm   428 sec   (1824 perm/sec)   p_kst 2.910256e-04   p_cons 5.682667e-01   p_joint 9.153846e-04

Joint ci ratio: 1.468419e-01	ci left: 8.350796e-04	ci right 9.686237e-04	k: 711	n:790000
Cons ci ratio: 3.843719e-03	ci left: 5.672322e-01	ci right 5.694179e-01	k: 448977	n:790000
KS ci ratio: 2.578792e-01	ci left: 2.547309e-04	ci right 3.312901e-04	k: 230	n:790000
ZNF492   790000 perm   438 sec   (1805 perm/sec)   p_kst 2.911392e-04   p_cons 5.683253e-01   p_joint 9.000000e-04

Joint ci ratio: 1.455191e-01	ci left: 8.402969e-04	ci right 9.733596e-04	k: 724	n:800000
Cons ci ratio: 3.820061e-03	ci left: 5.671825e-01	ci right 5.693545e-01	k: 454615	n:800000
KS ci ratio: 2.556749e-01	ci left: 2.562250e-04	ci right 3.324700e-04	k: 234	n:800000
ZNF492   800000 perm   447 sec   (1788 perm/sec)   p_kst 2.925000e-04   p_cons 5.682687e-01   p_joint 9.050000e-04

Joint ci ratio: 1.448218e-01	ci left: 8.382509e-04	ci right 9.702986e-04	k: 731	n:810000
Cons ci ratio: 3.797149e-03	ci left: 5.670933e-01	ci right 5.692519e-01	k: 460220	n:810000
KS ci ratio: 2.540584e-01	ci left: 2.565289e-04	ci right 3.323052e-04	k: 237	n:810000
ZNF492   810000 perm   459 sec   (1766 perm/sec)   p_kst 2.925926e-04   p_cons 5.681728e-01   p_joint 9.024691e-04

Joint ci ratio: 1.466383e-01	ci left: 8.068765e-04	ci right 9.357158e-04	k: 713	n:820000
Cons ci ratio: 3.774072e-03	ci left: 5.670807e-01	ci right 5.692261e-01	k: 465886	n:820000
KS ci ratio: 2.601434e-01	ci left: 2.408498e-04	ci right 3.139760e-04	k: 226	n:820000
ZNF492   820000 perm   468 sec   (1751 perm/sec)   p_kst 2.756098e-04   p_cons 5.681537e-01   p_joint 8.695122e-04

Joint ci ratio: 1.551345e-01	ci left: 7.090403e-04	ci right 8.294277e-04	k: 637	n:830000
Cons ci ratio: 3.750684e-03	ci left: 5.671637e-01	ci right 5.692961e-01	k: 471631	n:830000
KS ci ratio: 2.590050e-01	ci left: 2.402009e-04	ci right 3.127593e-04	k: 228	n:830000
ZNF492   830000 perm   477 sec   (1740 perm/sec)   p_kst 2.746988e-04   p_cons 5.682301e-01   p_joint 7.674699e-04

Joint ci ratio: 1.544103e-01	ci left: 7.074655e-04	ci right 8.269729e-04	k: 643	n:840000
Cons ci ratio: 3.728565e-03	ci left: 5.671340e-01	ci right 5.692537e-01	k: 477283	n:840000
KS ci ratio: 2.567720e-01	ci left: 2.417955e-04	ci right 3.141049e-04	k: 232	n:840000
ZNF492   840000 perm   487 sec   (1726 perm/sec)   p_kst 2.761905e-04   p_cons 5.681940e-01   p_joint 7.654762e-04

Joint ci ratio: 1.534601e-01	ci left: 7.081917e-04	ci right 8.270178e-04	k: 651	n:850000
Cons ci ratio: 3.706638e-03	ci left: 5.671309e-01	ci right 5.692381e-01	k: 482957	n:850000
KS ci ratio: 2.551347e-01	ci left: 2.422539e-04	ci right 3.141649e-04	k: 235	n:850000
ZNF492   850000 perm   497 sec   (1712 perm/sec)   p_kst 2.764706e-04   p_cons 5.681847e-01   p_joint 7.658824e-04

Joint ci ratio: 1.171084e-01	ci left: 1.224950e-03	ci right 1.378441e-03	k: 1118	n:860000
Cons ci ratio: 3.684683e-03	ci left: 5.671826e-01	ci right 5.692774e-01	k: 488678	n:860000
KS ci ratio: 2.545961e-01	ci left: 2.405255e-04	ci right 3.117488e-04	k: 236	n:860000
ZNF492   860000 perm   509 sec   (1690 perm/sec)   p_kst 2.744186e-04   p_cons 5.682302e-01   p_joint 1.300000e-03

Joint ci ratio: 1.176368e-01	ci left: 1.199712e-03	ci right 1.350766e-03	k: 1108	n:870000
Cons ci ratio: 3.662745e-03	ci left: 5.672825e-01	ci right 5.693653e-01	k: 494442	n:870000
KS ci ratio: 2.535287e-01	ci left: 2.399133e-04	ci right 3.106104e-04	k: 238	n:870000
ZNF492   870000 perm   521 sec   (1669 perm/sec)   p_kst 2.735632e-04   p_cons 5.683241e-01   p_joint 1.273563e-03

Joint ci ratio: 1.175316e-01	ci left: 1.188285e-03	ci right 1.337757e-03	k: 1110	n:880000
Cons ci ratio: 3.641472e-03	ci left: 5.673428e-01	ci right 5.694136e-01	k: 500173	n:880000
KS ci ratio: 2.509173e-01	ci left: 2.425097e-04	ci right 3.131209e-04	k: 243	n:880000
ZNF492   880000 perm   533 sec   (1651 perm/sec)   p_kst 2.761364e-04   p_cons 5.683784e-01   p_joint 1.261364e-03

Joint ci ratio: 1.201599e-01	ci left: 1.122601e-03	ci right 1.267193e-03	k: 1062	n:890000
Cons ci ratio: 3.621253e-03	ci left: 5.673084e-01	ci right 5.693676e-01	k: 505821	n:890000
KS ci ratio: 2.493889e-01	ci left: 2.429444e-04	ci right 3.131843e-04	k: 246	n:890000
ZNF492   890000 perm   545 sec   (1633 perm/sec)   p_kst 2.764045e-04   p_cons 5.683382e-01   p_joint 1.193258e-03

Joint ci ratio: 1.279941e-01	ci left: 9.744640e-04	ci right 1.108781e-03	k: 936	n:900000
Cons ci ratio: 3.600927e-03	ci left: 5.673348e-01	ci right 5.693825e-01	k: 511523	n:900000
KS ci ratio: 2.473936e-01	ci left: 2.444128e-04	ci right 3.144250e-04	k: 250	n:900000
ZNF492   900000 perm   558 sec   (1614 perm/sec)   p_kst 2.777778e-04   p_cons 5.683589e-01   p_joint 1.040000e-03

Joint ci ratio: 1.275189e-01	ci left: 9.712020e-04	ci right 1.104534e-03	k: 943	n:910000
Cons ci ratio: 3.581148e-03	ci left: 5.673321e-01	ci right 5.693685e-01	k: 517199	n:910000
KS ci ratio: 2.469025e-01	ci left: 2.427578e-04	ci right 3.121367e-04	k: 251	n:910000
ZNF492   910000 perm   570 sec   (1596 perm/sec)   p_kst 2.758242e-04   p_cons 5.683505e-01   p_joint 1.036264e-03

Joint ci ratio: 1.269154e-01	ci left: 9.701167e-04	ci right 1.102622e-03	k: 952	n:920000
Cons ci ratio: 3.561518e-03	ci left: 5.673534e-01	ci right 5.693787e-01	k: 522897	n:920000
KS ci ratio: 2.459286e-01	ci left: 2.421588e-04	ci right 3.110518e-04	k: 253	n:920000
ZNF492   920000 perm   582 sec   (1580 perm/sec)   p_kst 2.750000e-04   p_cons 5.683663e-01   p_joint 1.034783e-03

Joint ci ratio: 1.258629e-01	ci left: 9.763459e-04	ci right 1.108514e-03	k: 968	n:930000
Cons ci ratio: 3.542455e-03	ci left: 5.673399e-01	ci right 5.693543e-01	k: 528563	n:930000
KS ci ratio: 2.449661e-01	ci left: 2.415732e-04	ci right 3.099897e-04	k: 255	n:930000
ZNF492   930000 perm   593 sec   (1569 perm/sec)   p_kst 2.741935e-04   p_cons 5.683473e-01   p_joint 1.040860e-03

Joint ci ratio: 1.252825e-01	ci left: 9.752329e-04	ci right 1.106596e-03	k: 977	n:940000
Cons ci ratio: 3.523413e-03	ci left: 5.673661e-01	ci right 5.693697e-01	k: 534266	n:940000
KS ci ratio: 2.435433e-01	ci left: 2.419994e-04	ci right 3.100784e-04	k: 258	n:940000
ZNF492   940000 perm   603 sec   (1559 perm/sec)   p_kst 2.744681e-04   p_cons 5.683681e-01   p_joint 1.039362e-03

Joint ci ratio: 1.511637e-01	ci left: 6.538941e-04	ci right 7.618194e-04	k: 671	n:950000
Cons ci ratio: 3.503847e-03	ci left: 5.675075e-01	ci right 5.695005e-01	k: 540079	n:950000
KS ci ratio: 2.421449e-01	ci left: 2.424178e-04	ci right 3.101640e-04	k: 261	n:950000
ZNF492   950000 perm   616 sec   (1542 perm/sec)   p_kst 2.747368e-04   p_cons 5.685042e-01   p_joint 7.063158e-04

Joint ci ratio: 1.509397e-01	ci left: 6.490872e-04	ci right 7.560459e-04	k: 673	n:960000
Cons ci ratio: 3.485188e-03	ci left: 5.675637e-01	ci right 5.695463e-01	k: 545813	n:960000
KS ci ratio: 2.403172e-01	ci left: 2.438075e-04	ci right 3.113512e-04	k: 265	n:960000
ZNF492   960000 perm   629 sec   (1527 perm/sec)   p_kst 2.760417e-04   p_cons 5.685552e-01   p_joint 7.010417e-04

Joint ci ratio: 1.506052e-01	ci left: 6.453716e-04	ci right 7.514611e-04	k: 676	n:970000
Cons ci ratio: 3.466955e-03	ci left: 5.676003e-01	ci right 5.695725e-01	k: 551529	n:970000
KS ci ratio: 2.394189e-01	ci left: 2.432320e-04	ci right 3.103269e-04	k: 267	n:970000
ZNF492   970000 perm   641 sec   (1514 perm/sec)   p_kst 2.752577e-04   p_cons 5.685866e-01   p_joint 6.969072e-04

Joint ci ratio: 1.518452e-01	ci left: 6.279859e-04	ci right 7.321448e-04	k: 665	n:980000
Cons ci ratio: 3.449284e-03	ci left: 5.675963e-01	ci right 5.695584e-01	k: 557206	n:980000
KS ci ratio: 2.394192e-01	ci left: 2.407500e-04	ci right 3.071604e-04	k: 267	n:980000
ZNF492   980000 perm   651 sec   (1506 perm/sec)   p_kst 2.724490e-04   p_cons 5.685776e-01   p_joint 6.785714e-04

Joint ci ratio: 1.512786e-01	ci left: 6.265016e-04	ci right 7.299913e-04	k: 670	n:990000
Cons ci ratio: 3.431740e-03	ci left: 5.676126e-01	ci right 5.695648e-01	k: 562903	n:990000
KS ci ratio: 2.389740e-01	ci left: 2.392677e-04	ci right 3.051283e-04	k: 268	n:990000
ZNF492   990000 perm   661 sec   (1497 perm/sec)   p_kst 2.707071e-04   p_cons 5.685889e-01   p_joint 6.767677e-04

Joint ci ratio: 1.504956e-01	ci left: 6.269723e-04	ci right 7.299555e-04	k: 677	n:1000000
Cons ci ratio: 3.414858e-03	ci left: 5.675716e-01	ci right 5.695140e-01	k: 568543	n:1000000
KS ci ratio: 2.376525e-01	ci left: 2.396959e-04	ci right 3.052558e-04	k: 271	n:1000000
ZNF492   1000000 perm   672 sec   (1489 perm/sec)   p_kst 2.710000e-04   p_cons 5.685430e-01   p_joint 6.770000e-04

Joint ci ratio: 1.623029e-01	ci left: 5.303789e-04	ci right 6.249986e-04	k: 582	n:1010000
Cons ci ratio: 3.397886e-03	ci left: 5.675799e-01	ci right 5.695127e-01	k: 574232	n:1010000
KS ci ratio: 2.372170e-01	ci left: 2.382538e-04	ci right 3.032824e-04	k: 272	n:1010000
ZNF492   1010000 perm   683 sec   (1479 perm/sec)   p_kst 2.693069e-04   p_cons 5.685465e-01   p_joint 5.762376e-04

Joint ci ratio: 1.616114e-01	ci left: 5.298824e-04	ci right 6.239717e-04	k: 587	n:1020000
Cons ci ratio: 3.381206e-03	ci left: 5.675823e-01	ci right 5.695056e-01	k: 579915	n:1020000
KS ci ratio: 2.359242e-01	ci left: 2.386849e-04	ci right 3.034242e-04	k: 275	n:1020000
ZNF492   1020000 perm   694 sec   (1470 perm/sec)   p_kst 2.696078e-04   p_cons 5.685441e-01   p_joint 5.754902e-04

Joint ci ratio: 1.609287e-01	ci left: 5.293963e-04	ci right 6.229638e-04	k: 592	n:1030000
Cons ci ratio: 3.365055e-03	ci left: 5.675428e-01	ci right 5.694568e-01	k: 585555	n:1030000
KS ci ratio: 2.338156e-01	ci left: 2.409363e-04	ci right 3.056178e-04	k: 280	n:1030000
ZNF492   1030000 perm   704 sec   (1463 perm/sec)   p_kst 2.718447e-04   p_cons 5.685000e-01   p_joint 5.747573e-04

Joint ci ratio: 1.606583e-01	ci left: 5.261516e-04	ci right 6.189743e-04	k: 594	n:1040000
Cons ci ratio: 3.348811e-03	ci left: 5.675513e-01	ci right 5.694560e-01	k: 591244	n:1040000
KS ci ratio: 2.329880e-01	ci left: 2.404303e-04	ci right 3.047145e-04	k: 282	n:1040000
ZNF492   1040000 perm   718 sec   (1449 perm/sec)   p_kst 2.711538e-04   p_cons 5.685038e-01   p_joint 5.711538e-04

Joint ci ratio: 1.594566e-01	ci left: 5.293688e-04	ci right 6.219937e-04	k: 603	n:1050000
Cons ci ratio: 3.332969e-03	ci left: 5.675348e-01	ci right 5.694305e-01	k: 596907	n:1050000
KS ci ratio: 2.317628e-01	ci left: 2.408313e-04	ci right 3.048356e-04	k: 285	n:1050000
ZNF492   1050000 perm   730 sec   (1439 perm/sec)   p_kst 2.714286e-04   p_cons 5.684829e-01   p_joint 5.742857e-04

Joint ci ratio: 1.585404e-01	ci left: 5.307158e-04	ci right 6.229921e-04	k: 610	n:1060000
Cons ci ratio: 3.317573e-03	ci left: 5.674857e-01	ci right 5.693724e-01	k: 602535	n:1060000
KS ci ratio: 2.309567e-01	ci left: 2.403367e-04	ci right 3.039558e-04	k: 287	n:1060000
ZNF492   1060000 perm   743 sec   (1427 perm/sec)   p_kst 2.707547e-04   p_cons 5.684292e-01   p_joint 5.754717e-04

Joint ci ratio: 1.578958e-01	ci left: 5.302438e-04	ci right 6.220275e-04	k: 615	n:1070000
Cons ci ratio: 3.301733e-03	ci left: 5.675347e-01	ci right 5.694126e-01	k: 608267	n:1070000
KS ci ratio: 2.297631e-01	ci left: 2.407325e-04	ci right 3.040803e-04	k: 290	n:1070000
ZNF492   1070000 perm   756 sec   (1416 perm/sec)   p_kst 2.710280e-04   p_cons 5.684738e-01   p_joint 5.747664e-04

Joint ci ratio: 1.568802e-01	ci left: 5.324498e-04	ci right 6.239668e-04	k: 623	n:1080000
Cons ci ratio: 3.286479e-03	ci left: 5.675291e-01	ci right 5.693983e-01	k: 613941	n:1080000
KS ci ratio: 2.281999e-01	ci left: 2.419948e-04	ci right 3.051805e-04	k: 294	n:1080000
ZNF492   1080000 perm   767 sec   (1409 perm/sec)   p_kst 2.722222e-04   p_cons 5.684639e-01   p_joint 5.768519e-04

Joint ci ratio: 1.565046e-01	ci left: 5.302093e-04	ci right 6.211025e-04	k: 626	n:1090000
Cons ci ratio: 3.271666e-03	ci left: 5.674888e-01	ci right 5.693494e-01	k: 619577	n:1090000
KS ci ratio: 2.282002e-01	ci left: 2.397746e-04	ci right 3.023808e-04	k: 294	n:1090000
ZNF492   1090000 perm   778 sec   (1401 perm/sec)   p_kst 2.697248e-04   p_cons 5.684193e-01   p_joint 5.743119e-04

Joint ci ratio: 1.588024e-01	ci left: 5.096706e-04	ci right 5.984481e-04	k: 608	n:1100000
Cons ci ratio: 3.256442e-03	ci left: 5.675411e-01	ci right 5.693931e-01	k: 625314	n:1100000
KS ci ratio: 2.266685e-01	ci left: 2.410241e-04	ci right 3.034750e-04	k: 298	n:1100000
ZNF492   1100000 perm   791 sec   (1391 perm/sec)   p_kst 2.709091e-04   p_cons 5.684673e-01   p_joint 5.527273e-04

Joint ci ratio: 1.578974e-01	ci left: 5.111355e-04	ci right 5.996126e-04	k: 615	n:1110000
Cons ci ratio: 3.242012e-03	ci left: 5.675041e-01	ci right 5.693478e-01	k: 630953	n:1110000
KS ci ratio: 2.259143e-01	ci left: 2.405524e-04	ci right 3.026448e-04	k: 300	n:1110000
ZNF492   1110000 perm   802 sec   (1383 perm/sec)   p_kst 2.702703e-04   p_cons 5.684261e-01   p_joint 5.540541e-04

Joint ci ratio: 1.572605e-01	ci left: 5.108600e-04	ci right 5.988991e-04	k: 620	n:1120000
Cons ci ratio: 3.227649e-03	ci left: 5.674866e-01	ci right 5.693220e-01	k: 636613	n:1120000
KS ci ratio: 2.247968e-01	ci left: 2.409320e-04	ci right 3.027721e-04	k: 303	n:1120000
ZNF492   1120000 perm   814 sec   (1376 perm/sec)   p_kst 2.705357e-04   p_cons 5.684045e-01   p_joint 5.535714e-04

Joint ci ratio: 1.567566e-01	ci left: 5.097398e-04	ci right 5.972779e-04	k: 624	n:1130000
Cons ci ratio: 3.213794e-03	ci left: 5.674207e-01	ci right 5.692480e-01	k: 642218	n:1130000
KS ci ratio: 2.236957e-01	ci left: 2.413056e-04	ci right 3.028964e-04	k: 306	n:1130000
ZNF492   1130000 perm   827 sec   (1367 perm/sec)   p_kst 2.707965e-04   p_cons 5.683345e-01   p_joint 5.522124e-04

Joint ci ratio: 1.557627e-01	ci left: 5.120116e-04	ci right 5.993303e-04	k: 632	n:1140000
Cons ci ratio: 3.199778e-03	ci left: 5.674077e-01	ci right 5.692270e-01	k: 647882	n:1140000
KS ci ratio: 2.229707e-01	ci left: 2.408451e-04	ci right 3.020918e-04	k: 308	n:1140000
ZNF492   1140000 perm   838 sec   (1361 perm/sec)   p_kst 2.701754e-04   p_cons 5.683175e-01   p_joint 5.543860e-04

Joint ci ratio: 1.566320e-01	ci left: 5.017101e-04	ci right 5.877943e-04	k: 625	n:1150000
Cons ci ratio: 3.185949e-03	ci left: 5.673941e-01	ci right 5.692055e-01	k: 653545	n:1150000
KS ci ratio: 2.229709e-01	ci left: 2.387508e-04	ci right 2.994650e-04	k: 308	n:1150000
ZNF492   1150000 perm   850 sec   (1353 perm/sec)   p_kst 2.678261e-04   p_cons 5.683000e-01   p_joint 5.434783e-04

Joint ci ratio: 1.561341e-01	ci left: 5.006983e-04	ci right 5.863103e-04	k: 629	n:1160000
Cons ci ratio: 3.171886e-03	ci left: 5.674446e-01	ci right 5.692482e-01	k: 659282	n:1160000
KS ci ratio: 2.218964e-01	ci left: 2.391347e-04	ci right 2.996134e-04	k: 311	n:1160000
ZNF492   1160000 perm   869 sec   (1334 perm/sec)   p_kst 2.681034e-04   p_cons 5.683466e-01   p_joint 5.422414e-04

Joint ci ratio: 1.556408e-01	ci left: 4.997043e-04	ci right 5.848512e-04	k: 633	n:1170000
Cons ci ratio: 3.158343e-03	ci left: 5.674421e-01	ci right 5.692379e-01	k: 664958	n:1170000
KS ci ratio: 2.211886e-01	ci left: 2.387053e-04	ci right 2.988568e-04	k: 313	n:1170000
ZNF492   1170000 perm   883 sec   (1326 perm/sec)   p_kst 2.675214e-04   p_cons 5.683402e-01   p_joint 5.410256e-04

Joint ci ratio: 1.551523e-01	ci left: 4.987275e-04	ci right 5.834164e-04	k: 637	n:1180000
Cons ci ratio: 3.144614e-03	ci left: 5.674956e-01	ci right 5.692838e-01	k: 670700	n:1180000
KS ci ratio: 2.208374e-01	ci left: 2.374829e-04	ci right 2.972184e-04	k: 314	n:1180000
ZNF492   1180000 perm   898 sec   (1315 perm/sec)   p_kst 2.661017e-04   p_cons 5.683898e-01   p_joint 5.398305e-04

Joint ci ratio: 1.544278e-01	ci left: 4.993833e-04	ci right 5.837508e-04	k: 643	n:1190000
Cons ci ratio: 3.131029e-03	ci left: 5.675532e-01	ci right 5.693338e-01	k: 676448	n:1190000
KS ci ratio: 2.191051e-01	ci left: 2.394575e-04	ci right 2.991535e-04	k: 319	n:1190000
ZNF492   1190000 perm   909 sec   (1309 perm/sec)   p_kst 2.680672e-04   p_cons 5.684437e-01   p_joint 5.403361e-04

Joint ci ratio: 1.535952e-01	ci left: 5.008303e-04	ci right 5.849442e-04	k: 650	n:1200000
Cons ci ratio: 3.117906e-03	ci left: 5.675649e-01	ci right 5.693381e-01	k: 682142	n:1200000
KS ci ratio: 2.177483e-01	ci left: 2.406130e-04	ci right 3.001760e-04	k: 323	n:1200000
ZNF492   1200000 perm   920 sec   (1304 perm/sec)   p_kst 2.691667e-04   p_cons 5.684517e-01   p_joint 5.416667e-04

Joint ci ratio: 1.527759e-01	ci left: 5.022546e-04	ci right 5.861166e-04	k: 657	n:1210000
Cons ci ratio: 3.104485e-03	ci left: 5.676492e-01	ci right 5.694150e-01	k: 687924	n:1210000
KS ci ratio: 2.174132e-01	ci left: 2.394059e-04	ci right 2.985666e-04	k: 324	n:1210000
ZNF492   1210000 perm   932 sec   (1299 perm/sec)   p_kst 2.677686e-04   p_cons 5.685322e-01   p_joint 5.429752e-04

Joint ci ratio: 1.524290e-01	ci left: 5.005028e-04	ci right 5.838652e-04	k: 660	n:1220000
Cons ci ratio: 3.091267e-03	ci left: 5.677271e-01	ci right 5.694856e-01	k: 693700	n:1220000
KS ci ratio: 2.167474e-01	ci left: 2.389938e-04	ci right 2.978477e-04	k: 326	n:1220000
ZNF492   1220000 perm   943 sec   (1294 perm/sec)   p_kst 2.672131e-04   p_cons 5.686066e-01   p_joint 5.409836e-04

Joint ci ratio: 1.518557e-01	ci left: 5.003440e-04	ci right 5.833381e-04	k: 665	n:1230000
Cons ci ratio: 3.079370e-03	ci left: 5.676201e-01	ci right 5.693715e-01	k: 699250	n:1230000
KS ci ratio: 2.160876e-01	ci left: 2.385886e-04	ci right 2.971402e-04	k: 328	n:1230000
ZNF492   1230000 perm   954 sec   (1289 perm/sec)   p_kst 2.666667e-04   p_cons 5.684959e-01   p_joint 5.406504e-04

Joint ci ratio: 1.515150e-01	ci left: 4.986365e-04	ci right 5.811449e-04	k: 668	n:1240000
Cons ci ratio: 3.066570e-03	ci left: 5.676809e-01	ci right 5.694252e-01	k: 705006	n:1240000
KS ci ratio: 2.157601e-01	ci left: 2.374273e-04	ci right 2.955939e-04	k: 329	n:1240000
ZNF492   1240000 perm   966 sec   (1284 perm/sec)   p_kst 2.653226e-04   p_cons 5.685532e-01   p_joint 5.387097e-04

Joint ci ratio: 1.340938e-01	ci left: 6.373820e-04	ci right 7.297569e-04	k: 853	n:1250000
Cons ci ratio: 3.054237e-03	ci left: 5.676912e-01	ci right 5.694285e-01	k: 710700	n:1250000
KS ci ratio: 2.147860e-01	ci left: 2.377985e-04	ci right 2.957584e-04	k: 332	n:1250000
ZNF492   1250000 perm   979 sec   (1277 perm/sec)   p_kst 2.656000e-04   p_cons 5.685600e-01   p_joint 6.824000e-04

Joint ci ratio: 1.369313e-01	ci left: 6.054866e-04	ci right 6.952472e-04	k: 818	n:1260000
Cons ci ratio: 3.042046e-03	ci left: 5.677021e-01	ci right 5.694325e-01	k: 716395	n:1260000
KS ci ratio: 2.135074e-01	ci left: 2.389156e-04	ci right 2.967556e-04	k: 336	n:1260000
ZNF492   1260000 perm   991 sec   (1271 perm/sec)   p_kst 2.666667e-04   p_cons 5.685675e-01   p_joint 6.492063e-04

Joint ci ratio: 1.362673e-01	ci left: 6.068030e-04	ci right 6.962871e-04	k: 826	n:1270000
Cons ci ratio: 3.029753e-03	ci left: 5.677530e-01	ci right 5.694766e-01	k: 722141	n:1270000
KS ci ratio: 2.122513e-01	ci left: 2.400161e-04	ci right 2.977362e-04	k: 340	n:1270000
ZNF492   1270000 perm   1003 sec   (1267 perm/sec)   p_kst 2.677165e-04   p_cons 5.686150e-01   p_joint 6.503937e-04

Joint ci ratio: 1.373522e-01	ci left: 5.922534e-04	ci right 6.803441e-04	k: 813	n:1280000
Cons ci ratio: 3.017982e-03	ci left: 5.677422e-01	ci right 5.694590e-01	k: 727809	n:1280000
KS ci ratio: 2.119409e-01	ci left: 2.388807e-04	ci right 2.962329e-04	k: 341	n:1280000
ZNF492   1280000 perm   1015 sec   (1262 perm/sec)   p_kst 2.664062e-04   p_cons 5.686008e-01   p_joint 6.351562e-04

Joint ci ratio: 1.453437e-01	ci left: 5.226021e-04	ci right 6.052484e-04	k: 726	n:1290000
Cons ci ratio: 3.005924e-03	ci left: 5.678006e-01	ci right 5.695107e-01	k: 733566	n:1290000
KS ci ratio: 2.116319e-01	ci left: 2.377630e-04	ci right 2.947528e-04	k: 342	n:1290000
ZNF492   1290000 perm   1027 sec   (1257 perm/sec)   p_kst 2.651163e-04   p_cons 5.686558e-01   p_joint 5.627907e-04

Joint ci ratio: 1.462526e-01	ci left: 5.119113e-04	ci right 5.934175e-04	k: 717	n:1300000
Cons ci ratio: 2.994320e-03	ci left: 5.678073e-01	ci right 5.695108e-01	k: 739257	n:1300000
KS ci ratio: 2.107124e-01	ci left: 2.381197e-04	ci right 2.949150e-04	k: 345	n:1300000
ZNF492   1300000 perm   1039 sec   (1252 perm/sec)   p_kst 2.653846e-04   p_cons 5.686592e-01   p_joint 5.515385e-04

Joint ci ratio: 1.454445e-01	ci left: 5.138877e-04	ci right 5.952171e-04	k: 725	n:1310000
Cons ci ratio: 2.983058e-03	ci left: 5.677796e-01	ci right 5.694766e-01	k: 744903	n:1310000
KS ci ratio: 2.101061e-01	ci left: 2.377482e-04	ci right 2.942708e-04	k: 347	n:1310000
ZNF492   1310000 perm   1051 sec   (1247 perm/sec)   p_kst 2.648855e-04   p_cons 5.686282e-01   p_joint 5.534351e-04

Joint ci ratio: 1.448471e-01	ci left: 5.143750e-04	ci right 5.954183e-04	k: 731	n:1320000
Cons ci ratio: 2.971128e-03	ci left: 5.678834e-01	ci right 5.695739e-01	k: 750722	n:1320000
KS ci ratio: 2.095050e-01	ci left: 2.373827e-04	ci right 2.936361e-04	k: 349	n:1320000
ZNF492   1320000 perm   1063 sec   (1241 perm/sec)   p_kst 2.643939e-04   p_cons 5.687288e-01   p_joint 5.537879e-04

Joint ci ratio: 1.443550e-01	ci left: 5.141309e-04	ci right 5.948368e-04	k: 736	n:1330000
Cons ci ratio: 2.959480e-03	ci left: 5.679623e-01	ci right 5.696464e-01	k: 756510	n:1330000
KS ci ratio: 2.086128e-01	ci left: 2.377354e-04	ci right 2.938019e-04	k: 352	n:1330000
ZNF492   1330000 perm   1076 sec   (1236 perm/sec)   p_kst 2.646617e-04   p_cons 5.688045e-01   p_joint 5.533835e-04

Joint ci ratio: 1.164092e-01	ci left: 7.962942e-04	ci right 8.954359e-04	k: 1132	n:1340000
Cons ci ratio: 3.047166e-03	ci left: 5.517345e-01	ci right 5.534190e-01	k: 740453	n:1340000
KS ci ratio: 2.077319e-01	ci left: 2.380834e-04	ci right 2.939647e-04	k: 355	n:1340000
ZNF492   1340000 perm   1088 sec   (1232 perm/sec)   p_kst 2.649254e-04   p_cons 5.525769e-01   p_joint 8.447761e-04

Joint ci ratio: 1.162044e-01	ci left: 7.932725e-04	ci right 8.918522e-04	k: 1136	n:1350000
Cons ci ratio: 3.035717e-03	ci left: 5.517608e-01	ci right 5.534390e-01	k: 746010	n:1350000
KS ci ratio: 2.071509e-01	ci left: 2.377243e-04	ci right 2.933455e-04	k: 357	n:1350000
ZNF492   1350000 perm   1100 sec   (1227 perm/sec)   p_kst 2.644444e-04   p_cons 5.526000e-01   p_joint 8.414815e-04

Joint ci ratio: 1.164614e-01	ci left: 7.838699e-04	ci right 8.815114e-04	k: 1131	n:1360000
Cons ci ratio: 3.024208e-03	ci left: 5.518175e-01	ci right 5.534896e-01	k: 751609	n:1360000
KS ci ratio: 2.057191e-01	ci left: 2.394628e-04	ci right 2.950548e-04	k: 362	n:1360000
ZNF492   1360000 perm   1113 sec   (1222 perm/sec)   p_kst 2.661765e-04   p_cons 5.526537e-01   p_joint 8.316176e-04

Joint ci ratio: 1.163589e-01	ci left: 7.795654e-04	ci right 8.765794e-04	k: 1133	n:1370000
Cons ci ratio: 3.012766e-03	ci left: 5.518837e-01	ci right 5.535496e-01	k: 757222	n:1370000
KS ci ratio: 2.045949e-01	ci left: 2.404846e-04	ci right 2.959706e-04	k: 366	n:1370000
ZNF492   1370000 perm   1126 sec   (1217 perm/sec)   p_kst 2.671533e-04   p_cons 5.527168e-01   p_joint 8.270073e-04

Joint ci ratio: 1.158998e-01	ci left: 7.802487e-04	ci right 8.769385e-04	k: 1142	n:1380000
Cons ci ratio: 3.001664e-03	ci left: 5.519142e-01	ci right 5.535740e-01	k: 762787	n:1380000
KS ci ratio: 2.037637e-01	ci left: 2.408047e-04	ci right 2.961107e-04	k: 369	n:1380000
ZNF492   1380000 perm   1138 sec   (1212 perm/sec)   p_kst 2.673913e-04   p_cons 5.527442e-01   p_joint 8.275362e-04

Joint ci ratio: 1.154462e-01	ci left: 7.809229e-04	ci right 8.772916e-04	k: 1151	n:1390000
Cons ci ratio: 2.990505e-03	ci left: 5.519737e-01	ci right 5.536275e-01	k: 768393	n:1390000
KS ci ratio: 2.024005e-01	ci left: 2.424866e-04	ci right 2.977602e-04	k: 374	n:1390000
ZNF492   1390000 perm   1151 sec   (1207 perm/sec)   p_kst 2.690647e-04   p_cons 5.528007e-01   p_joint 8.280576e-04

Joint ci ratio: 1.148001e-01	ci left: 7.843633e-04	ci right 8.805782e-04	k: 1164	n:1400000
Cons ci ratio: 2.979693e-03	ci left: 5.519952e-01	ci right 5.536431e-01	k: 773947	n:1400000
KS ci ratio: 2.010644e-01	ci left: 2.441456e-04	ci right 2.993849e-04	k: 379	n:1400000
ZNF492   1400000 perm   1164 sec   (1203 perm/sec)   p_kst 2.707143e-04   p_cons 5.528193e-01   p_joint 8.314286e-04

Joint ci ratio: 1.145546e-01	ci left: 7.822448e-04	ci right 8.779808e-04	k: 1169	n:1410000
Cons ci ratio: 2.969067e-03	ci left: 5.520051e-01	ci right 5.536472e-01	k: 779485	n:1410000
KS ci ratio: 2.005374e-01	ci left: 2.437612e-04	ci right 2.987513e-04	k: 381	n:1410000
ZNF492   1410000 perm   1177 sec   (1198 perm/sec)   p_kst 2.702128e-04   p_cons 5.528262e-01   p_joint 8.290780e-04

Joint ci ratio: 1.139715e-01	ci left: 7.849453e-04	ci right 8.804898e-04	k: 1181	n:1420000
Cons ci ratio: 2.958515e-03	ci left: 5.520212e-01	ci right 5.536575e-01	k: 785032	n:1420000
KS ci ratio: 1.992376e-01	ci left: 2.453895e-04	ci right 3.003445e-04	k: 386	n:1420000
ZNF492   1420000 perm   1190 sec   (1193 perm/sec)   p_kst 2.718310e-04   p_cons 5.528394e-01   p_joint 8.316901e-04

Joint ci ratio: 1.135401e-01	ci left: 7.855708e-04	ci right 8.808053e-04	k: 1190	n:1430000
Cons ci ratio: 2.948229e-03	ci left: 5.520112e-01	ci right 5.536417e-01	k: 790542	n:1430000
KS ci ratio: 1.987248e-01	ci left: 2.450024e-04	ci right 2.997124e-04	k: 388	n:1430000
ZNF492   1430000 perm   1203 sec   (1189 perm/sec)   p_kst 2.713287e-04   p_cons 5.528266e-01   p_joint 8.321678e-04

Joint ci ratio: 1.154479e-01	ci left: 7.538069e-04	ci right 8.468308e-04	k: 1151	n:1440000
Cons ci ratio: 2.937934e-03	ci left: 5.520208e-01	ci right 5.536457e-01	k: 796080	n:1440000
KS ci ratio: 1.982159e-01	ci left: 2.446208e-04	ci right 2.990889e-04	k: 390	n:1440000
ZNF492   1440000 perm   1216 sec   (1184 perm/sec)   p_kst 2.708333e-04   p_cons 5.528333e-01   p_joint 7.993056e-04

Joint ci ratio: 1.151485e-01	ci left: 7.526268e-04	ci right 8.452479e-04	k: 1157	n:1450000
Cons ci ratio: 2.927709e-03	ci left: 5.520365e-01	ci right 5.536557e-01	k: 801627	n:1450000
KS ci ratio: 1.969604e-01	ci left: 2.462115e-04	ci right 3.006448e-04	k: 395	n:1450000
ZNF492   1450000 perm   1229 sec   (1179 perm/sec)   p_kst 2.724138e-04   p_cons 5.528462e-01   p_joint 7.979310e-04

Joint ci ratio: 1.026454e-01	ci left: 9.467114e-04	ci right 1.049805e-03	k: 1456	n:1460000
Cons ci ratio: 2.917498e-03	ci left: 5.520677e-01	ci right 5.536814e-01	k: 807197	n:1460000
KS ci ratio: 1.954848e-01	ci left: 2.484328e-04	ci right 3.028968e-04	k: 401	n:1460000
ZNF492   1460000 perm   1243 sec   (1175 perm/sec)   p_kst 2.746575e-04   p_cons 5.528747e-01   p_joint 9.972603e-04

Joint ci ratio: 1.023298e-01	ci left: 9.462367e-04	ci right 1.048943e-03	k: 1465	n:1470000
Cons ci ratio: 2.907669e-03	ci left: 5.520516e-01	ci right 5.536598e-01	k: 812698	n:1470000
KS ci ratio: 1.947595e-01	ci left: 2.486839e-04	ci right 3.029767e-04	k: 404	n:1470000
ZNF492   1470000 perm   1256 sec   (1170 perm/sec)   p_kst 2.748299e-04   p_cons 5.528558e-01   p_joint 9.965986e-04

Joint ci ratio: 1.020518e-01	ci left: 9.451104e-04	ci right 1.047399e-03	k: 1473	n:1480000
Cons ci ratio: 2.897914e-03	ci left: 5.520397e-01	ci right 5.536425e-01	k: 818205	n:1480000
KS ci ratio: 1.938047e-01	ci left: 2.495749e-04	ci right 3.037635e-04	k: 408	n:1480000
ZNF492   1480000 perm   1270 sec   (1165 perm/sec)   p_kst 2.756757e-04   p_cons 5.528412e-01   p_joint 9.952703e-04

Joint ci ratio: 1.017761e-01	ci left: 9.439996e-04	ci right 1.045875e-03	k: 1481	n:1490000
Cons ci ratio: 2.888300e-03	ci left: 5.520207e-01	ci right 5.536180e-01	k: 823701	n:1490000
KS ci ratio: 1.926307e-01	ci left: 2.510933e-04	ci right 3.052426e-04	k: 413	n:1490000
ZNF492   1490000 perm   1284 sec   (1161 perm/sec)   p_kst 2.771812e-04   p_cons 5.528195e-01   p_joint 9.939597e-04

Joint ci ratio: 1.014004e-01	ci left: 9.448534e-04	ci right 1.046423e-03	k: 1492	n:1500000
Cons ci ratio: 2.878164e-03	ci left: 5.521079e-01	ci right 5.536999e-01	k: 829356	n:1500000
KS ci ratio: 1.921671e-01	ci left: 2.506885e-04	ci right 3.046052e-04	k: 415	n:1500000
ZNF492   1500000 perm   1299 sec   (1155 perm/sec)   p_kst 2.766667e-04   p_cons 5.529040e-01   p_joint 9.946667e-04

Joint ci ratio: 1.009617e-01	ci left: 9.469875e-04	ci right 1.048320e-03	k: 1505	n:1510000
Cons ci ratio: 2.868868e-03	ci left: 5.520675e-01	ci right 5.536542e-01	k: 834820	n:1510000
KS ci ratio: 1.912497e-01	ci left: 2.515501e-04	ci right 3.053639e-04	k: 419	n:1510000
ZNF492   1510000 perm   1312 sec   (1151 perm/sec)   p_kst 2.774834e-04   p_cons 5.528609e-01   p_joint 9.966887e-04

Joint ci ratio: 1.006282e-01	ci left: 9.471704e-04	ci right 1.048167e-03	k: 1515	n:1520000
Cons ci ratio: 2.859273e-03	ci left: 5.520947e-01	ci right 5.536762e-01	k: 840386	n:1520000
KS ci ratio: 1.905703e-01	ci left: 2.517746e-04	ci right 3.054228e-04	k: 422	n:1520000
ZNF492   1520000 perm   1326 sec   (1146 perm/sec)   p_kst 2.776316e-04   p_cons 5.528855e-01   p_joint 9.967105e-04

Joint ci ratio: 1.001666e-01	ci left: 9.499004e-04	ci right 1.050697e-03	k: 1529	n:1530000
Cons ci ratio: 2.849928e-03	ci left: 5.520948e-01	ci right 5.536711e-01	k: 845911	n:1530000
KS ci ratio: 1.898981e-01	ci left: 2.519964e-04	ci right 3.054806e-04	k: 425	n:1530000
ZNF492   1530000 perm   1340 sec   (1142 perm/sec)   p_kst 2.777778e-04   p_cons 5.528830e-01   p_joint 9.993464e-04

Joint ci ratio: 9.990582e-02	ci left: 9.487970e-04	ci right 1.049199e-03	k: 1537	n:1540000
Cons ci ratio: 2.840570e-03	ci left: 5.521130e-01	ci right 5.536842e-01	k: 851464	n:1540000
KS ci ratio: 1.896757e-01	ci left: 2.509785e-04	ci right 3.041772e-04	k: 426	n:1540000
ZNF492   1540000 perm   1355 sec   (1136 perm/sec)   p_kst 2.766234e-04   p_cons 5.528987e-01   p_joint 9.980519e-04

Joint ci ratio: 9.955042e-02	ci left: 9.495956e-04	ci right 1.049703e-03	k: 1548	n:1550000
Cons ci ratio: 2.831333e-03	ci left: 5.521259e-01	ci right 5.536920e-01	k: 857009	n:1550000
KS ci ratio: 1.885747e-01	ci left: 2.524324e-04	ci right 3.055931e-04	k: 431	n:1550000
ZNF492   1550000 perm   1370 sec   (1131 perm/sec)   p_kst 2.780645e-04   p_cons 5.529090e-01   p_joint 9.987097e-04

Joint ci ratio: 9.948647e-02	ci left: 9.447584e-04	ci right 1.044289e-03	k: 1550	n:1560000
Cons ci ratio: 2.822497e-03	ci left: 5.520841e-01	ci right 5.536452e-01	k: 862469	n:1560000
KS ci ratio: 1.877077e-01	ci left: 2.532576e-04	ci right 3.063189e-04	k: 435	n:1560000
ZNF492   1560000 perm   1385 sec   (1126 perm/sec)   p_kst 2.788462e-04   p_cons 5.528647e-01   p_joint 9.935897e-04

Joint ci ratio: 9.932666e-02	ci left: 9.418463e-04	ci right 1.040901e-03	k: 1555	n:1570000
Cons ci ratio: 2.813166e-03	ci left: 5.521442e-01	ci right 5.537002e-01	k: 868088	n:1570000
KS ci ratio: 1.872787e-01	ci left: 2.528586e-04	ci right 3.057014e-04	k: 437	n:1570000
ZNF492   1570000 perm   1399 sec   (1122 perm/sec)   p_kst 2.783439e-04   p_cons 5.529223e-01   p_joint 9.904459e-04

Joint ci ratio: 9.919942e-02	ci left: 9.383540e-04	ci right 1.036908e-03	k: 1559	n:1580000
Cons ci ratio: 2.804272e-03	ci left: 5.521427e-01	ci right 5.536938e-01	k: 873611	n:1580000
KS ci ratio: 1.872788e-01	ci left: 2.512582e-04	ci right 3.037666e-04	k: 437	n:1580000
ZNF492   1580000 perm   1413 sec   (1118 perm/sec)   p_kst 2.765823e-04   p_cons 5.529184e-01   p_joint 9.867089e-04

Joint ci ratio: 9.891453e-02	ci left: 9.379725e-04	ci right 1.036187e-03	k: 1568	n:1590000
Cons ci ratio: 2.795337e-03	ci left: 5.521633e-01	ci right 5.537095e-01	k: 879169	n:1590000
KS ci ratio: 1.864294e-01	ci left: 2.520760e-04	ci right 3.044894e-04	k: 441	n:1590000
ZNF492   1590000 perm   1428 sec   (1113 perm/sec)   p_kst 2.773585e-04   p_cons 5.529365e-01   p_joint 9.861635e-04

Joint ci ratio: 9.897800e-02	ci left: 9.308910e-04	ci right 1.028430e-03	k: 1566	n:1600000
Cons ci ratio: 2.786709e-03	ci left: 5.521442e-01	ci right 5.536856e-01	k: 884664	n:1600000
KS ci ratio: 1.857999e-01	ci left: 2.522882e-04	ci right 3.045486e-04	k: 444	n:1600000
ZNF492   1600000 perm   1443 sec   (1109 perm/sec)   p_kst 2.775000e-04   p_cons 5.529150e-01   p_joint 9.787500e-04

Joint ci ratio: 9.869500e-02	ci left: 9.305609e-04	ci right 1.027770e-03	k: 1575	n:1610000
Cons ci ratio: 2.777940e-03	ci left: 5.521645e-01	ci right 5.537011e-01	k: 890222	n:1610000
KS ci ratio: 1.855916e-01	ci left: 2.513134e-04	ci right 3.033070e-04	k: 445	n:1610000
ZNF492   1610000 perm   1467 sec   (1097 perm/sec)   p_kst 2.763975e-04   p_cons 5.529329e-01   p_joint 9.782609e-04

Joint ci ratio: 9.847663e-02	ci left: 9.290311e-04	ci right 1.025854e-03	k: 1582	n:1620000
Cons ci ratio: 2.769378e-03	ci left: 5.521624e-01	ci right 5.536942e-01	k: 895744	n:1620000
KS ci ratio: 1.851769e-01	ci left: 2.509394e-04	ci right 3.027265e-04	k: 447	n:1620000
ZNF492   1620000 perm   1488 sec   (1089 perm/sec)   p_kst 2.759259e-04   p_cons 5.529284e-01   p_joint 9.765432e-04

Joint ci ratio: 9.822879e-02	ci left: 9.281188e-04	ci right 1.024589e-03	k: 1590	n:1630000
Cons ci ratio: 2.760930e-03	ci left: 5.521541e-01	ci right 5.536813e-01	k: 901256	n:1630000
KS ci ratio: 1.849707e-01	ci left: 2.499849e-04	ci right 3.015112e-04	k: 448	n:1630000
ZNF492   1630000 perm   1503 sec   (1085 perm/sec)   p_kst 2.748466e-04   p_cons 5.529178e-01   p_joint 9.754601e-04

Joint ci ratio: 9.879005e-02	ci left: 9.117539e-04	ci right 1.007096e-03	k: 1572	n:1640000
Cons ci ratio: 2.752592e-03	ci left: 5.521399e-01	ci right 5.536624e-01	k: 906758	n:1640000
KS ci ratio: 1.849709e-01	ci left: 2.484606e-04	ci right 2.996727e-04	k: 448	n:1640000
ZNF492   1640000 perm   1517 sec   (1081 perm/sec)   p_kst 2.731707e-04   p_cons 5.529012e-01   p_joint 9.585366e-04

Joint ci ratio: 9.838424e-02	ci left: 9.139127e-04	ci right 1.009065e-03	k: 1585	n:1650000
Cons ci ratio: 2.744541e-03	ci left: 5.520876e-01	ci right 5.536055e-01	k: 912197	n:1650000
KS ci ratio: 1.841523e-01	ci left: 2.492670e-04	ci right 3.003926e-04	k: 452	n:1650000
ZNF492   1650000 perm   1532 sec   (1077 perm/sec)   p_kst 2.739394e-04   p_cons 5.528467e-01   p_joint 9.606061e-04

Joint ci ratio: 9.863383e-02	ci left: 9.037064e-04	ci right 9.980486e-04	k: 1577	n:1660000
Cons ci ratio: 2.736086e-03	ci left: 5.521216e-01	ci right 5.536349e-01	k: 917778	n:1660000
KS ci ratio: 1.831442e-01	ci left: 2.506390e-04	ci right 3.017334e-04	k: 457	n:1660000
ZNF492   1660000 perm   1547 sec   (1073 perm/sec)   p_kst 2.753012e-04   p_cons 5.528783e-01   p_joint 9.500000e-04

Joint ci ratio: 9.822994e-02	ci left: 9.058879e-04	ci right 1.000048e-03	k: 1590	n:1670000
Cons ci ratio: 2.727805e-03	ci left: 5.521377e-01	ci right 5.536465e-01	k: 923330	n:1670000
KS ci ratio: 1.825473e-01	ci left: 2.508524e-04	ci right 3.018051e-04	k: 460	n:1670000
ZNF492   1670000 perm   1562 sec   (1069 perm/sec)   p_kst 2.754491e-04   p_cons 5.528922e-01   p_joint 9.520958e-04

Joint ci ratio: 9.823022e-02	ci left: 9.004956e-04	ci right 9.940957e-04	k: 1590	n:1680000
Cons ci ratio: 2.720064e-03	ci left: 5.520692e-01	ci right 5.535735e-01	k: 928740	n:1680000
KS ci ratio: 1.819562e-01	ci left: 2.510635e-04	ci right 3.018758e-04	k: 463	n:1680000
ZNF492   1680000 perm   1578 sec   (1065 perm/sec)   p_kst 2.755952e-04   p_cons 5.528214e-01   p_joint 9.464286e-04

Joint ci ratio: 9.789235e-02	ci left: 9.015165e-04	ci right 9.948819e-04	k: 1601	n:1690000
Cons ci ratio: 2.711937e-03	ci left: 5.520837e-01	ci right 5.535835e-01	k: 934289	n:1690000
KS ci ratio: 1.813708e-01	ci left: 2.512723e-04	ci right 3.019453e-04	k: 466	n:1690000
ZNF492   1690000 perm   1593 sec   (1061 perm/sec)   p_kst 2.757396e-04   p_cons 5.528337e-01   p_joint 9.473373e-04

Joint ci ratio: 9.777052e-02	ci left: 8.985087e-04	ci right 9.914402e-04	k: 1605	n:1700000
Cons ci ratio: 2.703799e-03	ci left: 5.521134e-01	ci right 5.536088e-01	k: 939864	n:1700000
KS ci ratio: 1.813710e-01	ci left: 2.497942e-04	ci right 3.001692e-04	k: 466	n:1700000
ZNF492   1700000 perm   1609 sec   (1056 perm/sec)   p_kst 2.741176e-04   p_cons 5.528612e-01   p_joint 9.441176e-04

Joint ci ratio: 9.755821e-02	ci left: 8.972479e-04	ci right 9.898359e-04	k: 1612	n:1710000
Cons ci ratio: 2.695558e-03	ci left: 5.521749e-01	ci right 5.536659e-01	k: 945494	n:1710000
KS ci ratio: 1.804077e-01	ci left: 2.511251e-04	ci right 3.014700e-04	k: 471	n:1710000
ZNF492   1710000 perm   1624 sec   (1053 perm/sec)   p_kst 2.754386e-04   p_cons 5.529205e-01   p_joint 9.426901e-04

Joint ci ratio: 9.955535e-02	ci left: 8.557381e-04	ci right 9.459560e-04	k: 1548	n:1720000
Cons ci ratio: 2.687389e-03	ci left: 5.522362e-01	ci right 5.537229e-01	k: 951125	n:1720000
KS ci ratio: 1.792717e-01	ci left: 2.529964e-04	ci right 3.033625e-04	k: 477	n:1720000
ZNF492   1720000 perm   1640 sec   (1049 perm/sec)   p_kst 2.773256e-04   p_cons 5.529797e-01   p_joint 9.000000e-04

Joint ci ratio: 9.933122e-02	ci left: 8.547373e-04	ci right 9.446349e-04	k: 1555	n:1730000
Cons ci ratio: 2.679758e-03	ci left: 5.522113e-01	ci right 5.536937e-01	k: 956608	n:1730000
KS ci ratio: 1.787117e-01	ci left: 2.531904e-04	ci right 3.034206e-04	k: 480	n:1730000
ZNF492   1730000 perm   1655 sec   (1045 perm/sec)   p_kst 2.774566e-04   p_cons 5.529526e-01   p_joint 8.988439e-04

Joint ci ratio: 9.914034e-02	ci left: 8.531876e-04	ci right 9.427398e-04	k: 1561	n:1740000
Cons ci ratio: 2.672219e-03	ci left: 5.521816e-01	ci right 5.536596e-01	k: 962082	n:1740000
KS ci ratio: 1.783414e-01	ci left: 2.528333e-04	ci right 3.028776e-04	k: 482	n:1740000
ZNF492   1740000 perm   1671 sec   (1041 perm/sec)   p_kst 2.770115e-04   p_cons 5.529207e-01   p_joint 8.971264e-04

Joint ci ratio: 9.888746e-02	ci left: 8.527705e-04	ci right 9.420373e-04	k: 1569	n:1750000
Cons ci ratio: 2.664459e-03	ci left: 5.522047e-01	ci right 5.536785e-01	k: 967648	n:1750000
KS ci ratio: 1.779733e-01	ci left: 2.524805e-04	ci right 3.023406e-04	k: 484	n:1750000
ZNF492   1750000 perm   1686 sec   (1038 perm/sec)   p_kst 2.765714e-04   p_cons 5.529417e-01   p_joint 8.965714e-04

Joint ci ratio: 9.873048e-02	ci left: 8.506959e-04	ci right 9.395960e-04	k: 1574	n:1760000
Cons ci ratio: 2.656676e-03	ci left: 5.522446e-01	ci right 5.537143e-01	k: 973244	n:1760000
KS ci ratio: 1.779735e-01	ci left: 2.510459e-04	ci right 3.006228e-04	k: 484	n:1760000
ZNF492   1760000 perm   1702 sec   (1034 perm/sec)   p_kst 2.750000e-04   p_cons 5.529795e-01   p_joint 8.943182e-04

Joint ci ratio: 9.854304e-02	ci left: 8.491959e-04	ci right 9.377610e-04	k: 1580	n:1770000
Cons ci ratio: 2.649160e-03	ci left: 5.522468e-01	ci right 5.537123e-01	k: 978774	n:1770000
KS ci ratio: 1.779736e-01	ci left: 2.496275e-04	ci right 2.989244e-04	k: 484	n:1770000
ZNF492   1770000 perm   1717 sec   (1031 perm/sec)   p_kst 2.734463e-04   p_cons 5.529797e-01   p_joint 8.926554e-04

Joint ci ratio: 9.895131e-02	ci left: 8.373018e-04	ci right 9.250093e-04	k: 1567	n:1780000
Cons ci ratio: 2.641867e-03	ci left: 5.522192e-01	ci right 5.536806e-01	k: 984251	n:1780000
KS ci ratio: 1.770631e-01	ci left: 2.509093e-04	ci right 3.001787e-04	k: 489	n:1780000
ZNF492   1780000 perm   1734 sec   (1027 perm/sec)   p_kst 2.747191e-04   p_cons 5.529500e-01   p_joint 8.803371e-04

Joint ci ratio: 9.866854e-02	ci left: 8.375279e-04	ci right 9.249938e-04	k: 1576	n:1790000
Cons ci ratio: 2.634573e-03	ci left: 5.522031e-01	ci right 5.536604e-01	k: 989748	n:1790000
KS ci ratio: 1.767029e-01	ci left: 2.505755e-04	ci right 2.996685e-04	k: 491	n:1790000
ZNF492   1790000 perm   1749 sec   (1023 perm/sec)   p_kst 2.743017e-04   p_cons 5.529318e-01   p_joint 8.804469e-04

Joint ci ratio: 9.838818e-02	ci left: 8.377517e-04	ci right 9.249781e-04	k: 1585	n:1800000
Cons ci ratio: 2.627205e-03	ci left: 5.522128e-01	ci right 5.536660e-01	k: 995291	n:1800000
KS ci ratio: 1.758117e-01	ci left: 2.518386e-04	ci right 3.009038e-04	k: 496	n:1800000
ZNF492   1800000 perm   1765 sec   (1020 perm/sec)   p_kst 2.755556e-04   p_cons 5.529394e-01   p_joint 8.805556e-04

Joint ci ratio: 9.823356e-02	ci left: 8.358177e-04	ci right 9.226981e-04	k: 1590	n:1810000
Cons ci ratio: 2.619751e-03	ci left: 5.522499e-01	ci right 5.536991e-01	k: 1000884	n:1810000
KS ci ratio: 1.754591e-01	ci left: 2.515036e-04	ci right 3.003949e-04	k: 498	n:1810000
ZNF492   1810000 perm   1781 sec   (1016 perm/sec)   p_kst 2.751381e-04   p_cons 5.529746e-01   p_joint 8.784530e-04

Joint ci ratio: 9.804893e-02	ci left: 8.344411e-04	ci right 9.210060e-04	k: 1596	n:1820000
Cons ci ratio: 2.612935e-03	ci left: 5.521779e-01	ci right 5.536231e-01	k: 1006279	n:1820000
KS ci ratio: 1.752836e-01	ci left: 2.506471e-04	ci right 2.993179e-04	k: 499	n:1820000
ZNF492   1820000 perm   1798 sec   (1012 perm/sec)   p_kst 2.741758e-04   p_cons 5.529005e-01   p_joint 8.769231e-04

Joint ci ratio: 9.789590e-02	ci left: 8.325466e-04	ci right 9.187724e-04	k: 1601	n:1830000
Cons ci ratio: 2.605979e-03	ci left: 5.521432e-01	ci right 5.535845e-01	k: 1011741	n:1830000
KS ci ratio: 1.747601e-01	ci left: 2.508450e-04	ci right 2.993934e-04	k: 502	n:1830000
ZNF492   1830000 perm   1814 sec   (1009 perm/sec)   p_kst 2.743169e-04   p_cons 5.528639e-01   p_joint 8.748634e-04

Joint ci ratio: 9.804940e-02	ci left: 8.253709e-04	ci right 9.109953e-04	k: 1596	n:1840000
Cons ci ratio: 2.598996e-03	ci left: 5.521247e-01	ci right 5.535621e-01	k: 1017232	n:1840000
KS ci ratio: 1.745867e-01	ci left: 2.500014e-04	ci right 2.983335e-04	k: 503	n:1840000
ZNF492   1840000 perm   1833 sec   (1004 perm/sec)   p_kst 2.733696e-04   p_cons 5.528435e-01   p_joint 8.673913e-04

Joint ci ratio: 9.801892e-02	ci left: 8.214366e-04	ci right 9.066248e-04	k: 1597	n:1850000
Cons ci ratio: 2.591954e-03	ci left: 5.521281e-01	ci right 5.535615e-01	k: 1022763	n:1850000
KS ci ratio: 1.740694e-01	ci left: 2.502009e-04	ci right 2.984132e-04	k: 506	n:1850000
ZNF492   1850000 perm   1849 sec   (1001 perm/sec)   p_kst 2.735135e-04   p_cons 5.528449e-01   p_joint 8.632432e-04

Joint ci ratio: 9.804986e-02	ci left: 8.164957e-04	ci right 9.011998e-04	k: 1596	n:1860000
Cons ci ratio: 2.584712e-03	ci left: 5.521808e-01	ci right 5.536104e-01	k: 1028386	n:1860000
KS ci ratio: 1.733867e-01	ci left: 2.509128e-04	ci right 2.990527e-04	k: 510	n:1860000
ZNF492   1860000 perm   1865 sec   (998 perm/sec)   p_kst 2.741935e-04   p_cons 5.528957e-01   p_joint 8.580645e-04

Joint ci ratio: 9.762275e-02	ci left: 8.194330e-04	ci right 9.040503e-04	k: 1610	n:1870000
Cons ci ratio: 2.577931e-03	ci left: 5.521560e-01	ci right 5.535818e-01	k: 1033865	n:1870000
KS ci ratio: 1.727120e-01	ci left: 2.516174e-04	ci right 2.996851e-04	k: 514	n:1870000
ZNF492   1870000 perm   1881 sec   (994 perm/sec)   p_kst 2.748663e-04   p_cons 5.528690e-01   p_joint 8.609626e-04

Joint ci ratio: 9.741139e-02	ci left: 8.187069e-04	ci right 9.030557e-04	k: 1617	n:1880000
Cons ci ratio: 2.571095e-03	ci left: 5.521522e-01	ci right 5.535742e-01	k: 1039383	n:1880000
KS ci ratio: 1.723777e-01	ci left: 2.512969e-04	ci right 2.992008e-04	k: 516	n:1880000
ZNF492   1880000 perm   1898 sec   (991 perm/sec)   p_kst 2.744681e-04   p_cons 5.528633e-01   p_joint 8.601064e-04

Joint ci ratio: 9.714158e-02	ci left: 8.190211e-04	ci right 9.031553e-04	k: 1626	n:1890000
Cons ci ratio: 2.564426e-03	ci left: 5.521268e-01	ci right 5.535450e-01	k: 1044860	n:1890000
KS ci ratio: 1.717146e-01	ci left: 2.519925e-04	ci right 2.998251e-04	k: 520	n:1890000
ZNF492   1890000 perm   1914 sec   (987 perm/sec)   p_kst 2.751323e-04   p_cons 5.528360e-01   p_joint 8.603175e-04

Joint ci ratio: 9.687400e-02	ci left: 8.193324e-04	ci right 9.032536e-04	k: 1635	n:1900000
Cons ci ratio: 2.557629e-03	ci left: 5.521364e-01	ci right 5.535508e-01	k: 1050403	n:1900000
KS ci ratio: 1.713860e-01	ci left: 2.516737e-04	ci right 2.993449e-04	k: 522	n:1900000
ZNF492   1900000 perm   1931 sec   (984 perm/sec)   p_kst 2.747368e-04   p_cons 5.528437e-01   p_joint 8.605263e-04

Joint ci ratio: 9.717191e-02	ci left: 8.099340e-04	ci right 8.931621e-04	k: 1625	n:1910000
Cons ci ratio: 2.550855e-03	ci left: 5.521516e-01	ci right 5.535624e-01	k: 1055957	n:1910000
KS ci ratio: 1.707343e-01	ci left: 2.523606e-04	ci right 2.999615e-04	k: 526	n:1910000
ZNF492   1910000 perm   1948 sec   (980 perm/sec)   p_kst 2.753927e-04   p_cons 5.528571e-01   p_joint 8.507853e-04

Joint ci ratio: 9.708253e-02	ci left: 8.072401e-04	ci right 8.901107e-04	k: 1628	n:1920000
Cons ci ratio: 2.544264e-03	ci left: 5.521417e-01	ci right 5.535488e-01	k: 1061463	n:1920000
KS ci ratio: 1.707344e-01	ci left: 2.510462e-04	ci right 2.983992e-04	k: 526	n:1920000
ZNF492   1920000 perm   1966 sec   (977 perm/sec)   p_kst 2.739583e-04   p_cons 5.528453e-01   p_joint 8.479167e-04

Joint ci ratio: 9.684503e-02	ci left: 8.071020e-04	ci right 8.897443e-04	k: 1636	n:1930000
Cons ci ratio: 2.537527e-03	ci left: 5.521702e-01	ci right 5.535737e-01	k: 1067043	n:1930000
KS ci ratio: 1.702505e-01	ci left: 2.512335e-04	ci right 2.984737e-04	k: 529	n:1930000
ZNF492   1930000 perm   1983 sec   (973 perm/sec)   p_kst 2.740933e-04   p_cons 5.528720e-01   p_joint 8.476684e-04

Joint ci ratio: 9.672704e-02	ci left: 8.049536e-04	ci right 8.872698e-04	k: 1640	n:1940000
Cons ci ratio: 2.531052e-03	ci left: 5.521578e-01	ci right 5.535576e-01	k: 1072544	n:1940000
KS ci ratio: 1.702506e-01	ci left: 2.499385e-04	ci right 2.969352e-04	k: 529	n:1940000
ZNF492   1940000 perm   2001 sec   (970 perm/sec)   p_kst 2.726804e-04   p_cons 5.528577e-01   p_joint 8.453608e-04

Joint ci ratio: 9.637522e-02	ci left: 8.068309e-04	ci right 8.890221e-04	k: 1652	n:1950000
Cons ci ratio: 2.524733e-03	ci left: 5.521244e-01	ci right 5.535206e-01	k: 1078004	n:1950000
KS ci ratio: 1.696117e-01	ci left: 2.506208e-04	ci right 2.975509e-04	k: 533	n:1950000
ZNF492   1950000 perm   2018 sec   (966 perm/sec)   p_kst 2.733333e-04   p_cons 5.528226e-01   p_joint 8.471795e-04

Joint ci ratio: 9.711321e-02	ci left: 7.902676e-04	ci right 8.714230e-04	k: 1627	n:1960000
Cons ci ratio: 2.518173e-03	ci left: 5.521480e-01	ci right 5.535406e-01	k: 1083575	n:1960000
KS ci ratio: 1.683551e-01	ci left: 2.532512e-04	ci right 3.002868e-04	k: 541	n:1960000
ZNF492   1960000 perm   2035 sec   (963 perm/sec)   p_kst 2.760204e-04   p_cons 5.528444e-01   p_joint 8.301020e-04

Joint ci ratio: 9.864122e-02	ci left: 7.614961e-04	ci right 8.409984e-04	k: 1577	n:1970000
Cons ci ratio: 2.511724e-03	ci left: 5.521597e-01	ci right 5.535488e-01	k: 1089123	n:1970000
KS ci ratio: 1.680454e-01	ci left: 2.529381e-04	ci right 2.998205e-04	k: 543	n:1970000
ZNF492   1970000 perm   2053 sec   (960 perm/sec)   p_kst 2.756345e-04   p_cons 5.528543e-01   p_joint 8.005076e-04

Joint ci ratio: 9.109554e-02	ci left: 8.917724e-04	ci right 9.773748e-04	k: 1849	n:1980000
Cons ci ratio: 2.505333e-03	ci left: 5.521693e-01	ci right 5.535548e-01	k: 1094667	n:1980000
KS ci ratio: 1.675839e-01	ci left: 2.531122e-04	ci right 2.998850e-04	k: 546	n:1980000
ZNF492   1980000 perm   2070 sec   (956 perm/sec)   p_kst 2.757576e-04   p_cons 5.528621e-01   p_joint 9.338384e-04

Joint ci ratio: 9.082588e-02	ci left: 8.926931e-04	ci right 9.781167e-04	k: 1860	n:1990000
Cons ci ratio: 2.499235e-03	ci left: 5.521305e-01	ci right 5.535126e-01	k: 1100115	n:1990000
KS ci ratio: 1.666722e-01	ci left: 2.547293e-04	ci right 3.015190e-04	k: 552	n:1990000
ZNF492   1990000 perm   2088 sec   (953 perm/sec)   p_kst 2.773869e-04   p_cons 5.528216e-01   p_joint 9.346734e-04

Joint ci ratio: 9.072855e-02	ci left: 8.901841e-04	ci right 9.752716e-04	k: 1864	n:2000000
Cons ci ratio: 2.492819e-03	ci left: 5.521641e-01	ci right 5.535427e-01	k: 1105707	n:2000000
KS ci ratio: 1.666723e-01	ci left: 2.534556e-04	ci right 3.000115e-04	k: 552	n:2000000
ZNF492   2000000 perm   2105 sec   (950 perm/sec)   p_kst 2.760000e-04   p_cons 5.528535e-01   p_joint 9.320000e-04

Joint ci ratio: 9.089967e-02	ci left: 8.823517e-04	ci right 9.668580e-04	k: 1857	n:2010000
Cons ci ratio: 2.486746e-03	ci left: 5.521387e-01	ci right 5.535139e-01	k: 1111181	n:2010000
KS ci ratio: 1.663717e-01	ci left: 2.531482e-04	ci right 2.995553e-04	k: 554	n:2010000
ZNF492   2010000 perm   2125 sec   (946 perm/sec)   p_kst 2.756219e-04   p_cons 5.528264e-01   p_joint 9.238806e-04

Joint ci ratio: 9.075332e-02	ci left: 8.808864e-04	ci right 9.651094e-04	k: 1863	n:2020000
Cons ci ratio: 2.480435e-03	ci left: 5.521700e-01	ci right 5.535418e-01	k: 1116769	n:2020000
KS ci ratio: 1.660728e-01	ci left: 2.528439e-04	ci right 2.991036e-04	k: 556	n:2020000
ZNF492   2020000 perm   2143 sec   (943 perm/sec)   p_kst 2.752475e-04   p_cons 5.528559e-01   p_joint 9.222772e-04

Joint ci ratio: 9.053503e-02	ci left: 8.808801e-04	ci right 9.648891e-04	k: 1872	n:2030000
Cons ci ratio: 2.474310e-03	ci left: 5.521734e-01	ci right 5.535418e-01	k: 1122301	n:2030000
KS ci ratio: 1.651854e-01	ci left: 2.544315e-04	ci right 3.007083e-04	k: 562	n:2030000
ZNF492   2030000 perm   2161 sec   (940 perm/sec)   p_kst 2.768473e-04   p_cons 5.528576e-01   p_joint 9.221675e-04

Joint ci ratio: 9.027030e-02	ci left: 8.818323e-04	ci right 9.656733e-04	k: 1883	n:2040000
Cons ci ratio: 2.468310e-03	ci left: 5.521605e-01	ci right 5.535256e-01	k: 1127800	n:2040000
KS ci ratio: 1.644566e-01	ci left: 2.555342e-04	ci right 3.017862e-04	k: 567	n:2040000
ZNF492   2040000 perm   2179 sec   (936 perm/sec)   p_kst 2.779412e-04   p_cons 5.528431e-01   p_joint 9.230392e-04

Joint ci ratio: 9.204810e-02	ci left: 8.432086e-04	ci right 9.250412e-04	k: 1811	n:2050000
Cons ci ratio: 2.462181e-03	ci left: 5.521825e-01	ci right 5.535442e-01	k: 1133370	n:2050000
KS ci ratio: 1.638805e-01	ci left: 2.561588e-04	ci right 3.023454e-04	k: 571	n:2050000
ZNF492   2050000 perm   2196 sec   (933 perm/sec)   p_kst 2.785366e-04   p_cons 5.528634e-01   p_joint 8.834146e-04

Joint ci ratio: 9.184560e-02	ci left: 8.429095e-04	ci right 9.245235e-04	k: 1819	n:2060000
Cons ci ratio: 2.456240e-03	ci left: 5.521756e-01	ci right 5.535340e-01	k: 1138881	n:2060000
KS ci ratio: 1.635948e-01	ci left: 2.558464e-04	ci right 3.018883e-04	k: 573	n:2060000
ZNF492   2060000 perm   2214 sec   (930 perm/sec)   p_kst 2.781553e-04   p_cons 5.528549e-01   p_joint 8.830097e-04

Joint ci ratio: 9.225255e-02	ci left: 8.312857e-04	ci right 9.121501e-04	k: 1803	n:2070000
Cons ci ratio: 2.450448e-03	ci left: 5.521475e-01	ci right 5.535026e-01	k: 1144348	n:2070000
KS ci ratio: 1.628868e-01	ci left: 2.569272e-04	ci right 3.029439e-04	k: 578	n:2070000
ZNF492   2070000 perm   2232 sec   (927 perm/sec)   p_kst 2.792271e-04   p_cons 5.528251e-01   p_joint 8.710145e-04

Joint ci ratio: 9.437072e-02	ci left: 7.897242e-04	ci right 8.684070e-04	k: 1723	n:2080000
Cons ci ratio: 2.444629e-03	ci left: 5.521331e-01	ci right 5.534850e-01	k: 1149843	n:2080000
KS ci ratio: 1.627464e-01	ci left: 2.561531e-04	ci right 3.019878e-04	k: 579	n:2080000
ZNF492   2080000 perm   2250 sec   (924 perm/sec)   p_kst 2.783654e-04   p_cons 5.528091e-01   p_joint 8.283654e-04

Joint ci ratio: 9.404391e-02	ci left: 7.915520e-04	ci right 8.701288e-04	k: 1735	n:2090000
Cons ci ratio: 2.438529e-03	ci left: 5.521845e-01	ci right 5.535331e-01	k: 1155475	n:2090000
KS ci ratio: 1.626064e-01	ci left: 2.553865e-04	ci right 3.010408e-04	k: 580	n:2090000
ZNF492   2090000 perm   2269 sec   (921 perm/sec)   p_kst 2.775120e-04   p_cons 5.528589e-01   p_joint 8.301435e-04

Joint ci ratio: 9.364008e-02	ci left: 7.947580e-04	ci right 8.732957e-04	k: 1750	n:2100000
Cons ci ratio: 2.432635e-03	ci left: 5.522025e-01	ci right 5.535479e-01	k: 1161038	n:2100000
KS ci ratio: 1.617731e-01	ci left: 2.569116e-04	ci right 3.025803e-04	k: 586	n:2100000
ZNF492   2100000 perm   2287 sec   (918 perm/sec)   p_kst 2.790476e-04   p_cons 5.528752e-01   p_joint 8.333333e-04

Joint ci ratio: 9.358678e-02	ci left: 7.919170e-04	ci right 8.701270e-04	k: 1752	n:2110000
Cons ci ratio: 2.426654e-03	ci left: 5.522468e-01	ci right 5.535890e-01	k: 1166657	n:2110000
KS ci ratio: 1.613612e-01	ci left: 2.570583e-04	ci right 3.026255e-04	k: 589	n:2110000
ZNF492   2110000 perm   2305 sec   (915 perm/sec)   p_kst 2.791469e-04   p_cons 5.529180e-01   p_joint 8.303318e-04

Joint ci ratio: 9.337397e-02	ci left: 7.918669e-04	ci right 8.698844e-04	k: 1760	n:2120000
Cons ci ratio: 2.420996e-03	ci left: 5.522337e-01	ci right 5.535727e-01	k: 1172155	n:2120000
KS ci ratio: 1.612247e-01	ci left: 2.562984e-04	ci right 3.016888e-04	k: 590	n:2120000
ZNF492   2120000 perm   2326 sec   (911 perm/sec)   p_kst 2.783019e-04   p_cons 5.529033e-01   p_joint 8.301887e-04

Joint ci ratio: 9.324177e-02	ci left: 7.904419e-04	ci right 8.682026e-04	k: 1765	n:2130000
Cons ci ratio: 2.415274e-03	ci left: 5.522419e-01	ci right 5.535777e-01	k: 1177698	n:2130000
KS ci ratio: 1.608171e-01	ci left: 2.564468e-04	ci right 3.017375e-04	k: 593	n:2130000
ZNF492   2130000 perm   2346 sec   (908 perm/sec)   p_kst 2.784038e-04   p_cons 5.529099e-01   p_joint 8.286385e-04

Joint ci ratio: 9.428975e-02	ci left: 7.689508e-04	ci right 8.454945e-04	k: 1726	n:2140000
Cons ci ratio: 2.409656e-03	ci left: 5.522368e-01	ci right 5.535696e-01	k: 1183213	n:2140000
KS ci ratio: 1.605471e-01	ci left: 2.561455e-04	ci right 3.012997e-04	k: 595	n:2140000
ZNF492   2140000 perm   2365 sec   (905 perm/sec)   p_kst 2.780374e-04   p_cons 5.529033e-01   p_joint 8.065421e-04

Joint ci ratio: 9.396378e-02	ci left: 7.708244e-04	ci right 8.472747e-04	k: 1738	n:2150000
Cons ci ratio: 2.404182e-03	ci left: 5.522105e-01	ci right 5.535401e-01	k: 1188682	n:2150000
KS ci ratio: 1.598777e-01	ci left: 2.571864e-04	ci right 3.023170e-04	k: 600	n:2150000
ZNF492   2150000 perm   2384 sec   (902 perm/sec)   p_kst 2.790698e-04   p_cons 5.528753e-01   p_joint 8.083721e-04

Joint ci ratio: 9.377525e-02	ci left: 7.704204e-04	ci right 8.466689e-04	k: 1745	n:2160000
Cons ci ratio: 2.398517e-03	ci left: 5.522311e-01	ci right 5.535577e-01	k: 1194252	n:2160000
KS ci ratio: 1.598779e-01	ci left: 2.559958e-04	ci right 3.009174e-04	k: 600	n:2160000
ZNF492   2160000 perm   2403 sec   (899 perm/sec)   p_kst 2.777778e-04   p_cons 5.528944e-01   p_joint 8.078704e-04

Joint ci ratio: 9.356116e-02	ci left: 7.704704e-04	ci right 8.465402e-04	k: 1753	n:2170000
Cons ci ratio: 2.393027e-03	ci left: 5.522239e-01	ci right 5.535474e-01	k: 1199762	n:2170000
KS ci ratio: 1.596125e-01	ci left: 2.557009e-04	ci right 3.004892e-04	k: 602	n:2170000
ZNF492   2170000 perm   2422 sec   (896 perm/sec)   p_kst 2.774194e-04   p_cons 5.528857e-01   p_joint 8.078341e-04

Joint ci ratio: 9.329554e-02	ci left: 7.714161e-04	ci right 8.473513e-04	k: 1763	n:2180000
Cons ci ratio: 2.387525e-03	ci left: 5.522269e-01	ci right 5.535473e-01	k: 1205294	n:2180000
KS ci ratio: 1.593485e-01	ci left: 2.554087e-04	ci right 3.000648e-04	k: 604	n:2180000
ZNF492   2180000 perm   2441 sec   (893 perm/sec)   p_kst 2.770642e-04   p_cons 5.528872e-01   p_joint 8.087156e-04

Joint ci ratio: 9.374891e-02	ci left: 7.603124e-04	ci right 8.355383e-04	k: 1746	n:2190000
Cons ci ratio: 2.382267e-03	ci left: 5.521869e-01	ci right 5.535043e-01	k: 1210732	n:2190000
KS ci ratio: 1.588243e-01	ci left: 2.559963e-04	ci right 3.005938e-04	k: 608	n:2190000
ZNF492   2190000 perm   2460 sec   (890 perm/sec)   p_kst 2.776256e-04   p_cons 5.528457e-01   p_joint 7.972603e-04

Joint ci ratio: 9.380283e-02	ci left: 7.559686e-04	ci right 8.308101e-04	k: 1744	n:2200000
Cons ci ratio: 2.376975e-03	ci left: 5.521618e-01	ci right 5.534763e-01	k: 1216202	n:2200000
KS ci ratio: 1.585642e-01	ci left: 2.557056e-04	ci right 3.001726e-04	k: 610	n:2200000
ZNF492   2200000 perm   2480 sec   (887 perm/sec)   p_kst 2.772727e-04   p_cons 5.528191e-01   p_joint 7.927273e-04

Joint ci ratio: 9.361527e-02	ci left: 7.556411e-04	ci right 8.302924e-04	k: 1751	n:2210000
Cons ci ratio: 2.371481e-03	ci left: 5.521863e-01	ci right 5.534978e-01	k: 1221781	n:2210000
KS ci ratio: 1.583053e-01	ci left: 2.554177e-04	ci right 2.997552e-04	k: 612	n:2210000
ZNF492   2210000 perm   2499 sec   (884 perm/sec)   p_kst 2.769231e-04   p_cons 5.528421e-01   p_joint 7.923077e-04

Joint ci ratio: 9.429112e-02	ci left: 7.412404e-04	ci right 8.150268e-04	k: 1726	n:2220000
Cons ci ratio: 2.366296e-03	ci left: 5.521538e-01	ci right 5.534623e-01	k: 1227234	n:2220000
KS ci ratio: 1.579194e-01	ci left: 2.555650e-04	ci right 2.998097e-04	k: 615	n:2220000
ZNF492   2220000 perm   2518 sec   (882 perm/sec)   p_kst 2.770270e-04   p_cons 5.528081e-01   p_joint 7.774775e-04

Joint ci ratio: 9.404636e-02	ci left: 7.418573e-04	ci right 8.155029e-04	k: 1735	n:2230000
Cons ci ratio: 2.360978e-03	ci left: 5.521566e-01	ci right 5.534621e-01	k: 1232765	n:2230000
KS ci ratio: 1.576636e-01	ci left: 2.552805e-04	ci right 2.993975e-04	k: 617	n:2230000
ZNF492   2230000 perm   2537 sec   (879 perm/sec)   p_kst 2.766816e-04   p_cons 5.528094e-01   p_joint 7.780269e-04

Joint ci ratio: 9.377661e-02	ci left: 7.429049e-04	ci right 8.164313e-04	k: 1745	n:2240000
Cons ci ratio: 2.355798e-03	ci left: 5.521379e-01	ci right 5.534406e-01	k: 1238248	n:2240000
KS ci ratio: 1.571558e-01	ci left: 2.558562e-04	ci right 2.999169e-04	k: 621	n:2240000
ZNF492   2240000 perm   2557 sec   (876 perm/sec)   p_kst 2.772321e-04   p_cons 5.527893e-01   p_joint 7.790179e-04

Joint ci ratio: 9.345592e-02	ci left: 7.448116e-04	ci right 8.182609e-04	k: 1757	n:2250000
Cons ci ratio: 2.350752e-03	ci left: 5.520985e-01	ci right 5.533983e-01	k: 1243684	n:2250000
KS ci ratio: 1.565279e-01	ci left: 2.568541e-04	ci right 3.008933e-04	k: 626	n:2250000
ZNF492   2250000 perm   2577 sec   (873 perm/sec)   p_kst 2.782222e-04   p_cons 5.527484e-01   p_joint 7.808889e-04

Joint ci ratio: 9.319120e-02	ci left: 7.458375e-04	ci right 8.191682e-04	k: 1767	n:2260000
Cons ci ratio: 2.345515e-03	ci left: 5.521063e-01	ci right 5.534033e-01	k: 1249226	n:2260000
KS ci ratio: 1.562788e-01	ci left: 2.565679e-04	ci right 3.004815e-04	k: 628	n:2260000
ZNF492   2260000 perm   2598 sec   (870 perm/sec)   p_kst 2.778761e-04   p_cons 5.527549e-01   p_joint 7.818584e-04

Joint ci ratio: 9.298107e-02	ci left: 7.459941e-04	ci right 8.191658e-04	k: 1775	n:2270000
Cons ci ratio: 2.340162e-03	ci left: 5.521459e-01	ci right 5.534399e-01	k: 1254840	n:2270000
KS ci ratio: 1.560310e-01	ci left: 2.562842e-04	ci right 3.000732e-04	k: 630	n:2270000
ZNF492   2270000 perm   2621 sec   (866 perm/sec)   p_kst 2.775330e-04   p_cons 5.527930e-01   p_joint 7.819383e-04

Joint ci ratio: 9.272035e-02	ci left: 7.470063e-04	ci right 8.200607e-04	k: 1785	n:2280000
Cons ci ratio: 2.334973e-03	ci left: 5.521583e-01	ci right 5.534495e-01	k: 1260393	n:2280000
KS ci ratio: 1.556614e-01	ci left: 2.564247e-04	ci right 3.001242e-04	k: 633	n:2280000
ZNF492   2280000 perm   2640 sec   (864 perm/sec)   p_kst 2.776316e-04   p_cons 5.528039e-01   p_joint 7.828947e-04

Joint ci ratio: 9.253920e-02	ci left: 7.467302e-04	ci right 8.196073e-04	k: 1792	n:2290000
Cons ci ratio: 2.329783e-03	ci left: 5.521780e-01	ci right 5.534664e-01	k: 1265963	n:2290000
KS ci ratio: 1.555389e-01	ci left: 2.557246e-04	ci right 2.992673e-04	k: 634	n:2290000
ZNF492   2290000 perm   2659 sec   (861 perm/sec)   p_kst 2.768559e-04   p_cons 5.528223e-01   p_joint 7.825328e-04

Joint ci ratio: 9.235910e-02	ci left: 7.464567e-04	ci right 8.191576e-04	k: 1799	n:2300000
Cons ci ratio: 2.324629e-03	ci left: 5.521972e-01	ci right 5.534827e-01	k: 1271532	n:2300000
KS ci ratio: 1.551727e-01	ci left: 2.558664e-04	ci right 2.993211e-04	k: 637	n:2300000
ZNF492   2300000 perm   2681 sec   (858 perm/sec)   p_kst 2.769565e-04   p_cons 5.528400e-01   p_joint 7.821739e-04

Joint ci ratio: 9.215454e-02	ci left: 7.466086e-04	ci right 8.191545e-04	k: 1807	n:2310000
Cons ci ratio: 2.319532e-03	ci left: 5.522114e-01	ci right 5.534941e-01	k: 1277090	n:2310000
KS ci ratio: 1.549301e-01	ci left: 2.555909e-04	ci right 2.989247e-04	k: 639	n:2310000
ZNF492   2310000 perm   2701 sec   (855 perm/sec)   p_kst 2.766234e-04   p_cons 5.528528e-01   p_joint 7.822511e-04

Joint ci ratio: 9.192600e-02	ci left: 7.471805e-04	ci right 8.195923e-04	k: 1816	n:2320000
Cons ci ratio: 2.314432e-03	ci left: 5.522332e-01	ci right 5.535132e-01	k: 1282666	n:2320000
KS ci ratio: 1.542088e-01	ci left: 2.569755e-04	ci right 3.003224e-04	k: 645	n:2320000
ZNF492   2320000 perm   2722 sec   (852 perm/sec)   p_kst 2.780172e-04   p_cons 5.528733e-01   p_joint 7.827586e-04

Joint ci ratio: 9.218037e-02	ci left: 7.397805e-04	ci right 8.116842e-04	k: 1806	n:2330000
Cons ci ratio: 2.309471e-03	ci left: 5.522321e-01	ci right 5.535094e-01	k: 1288189	n:2330000
KS ci ratio: 1.539707e-01	ci left: 2.566978e-04	ci right 2.999249e-04	k: 647	n:2330000
ZNF492   2330000 perm   2742 sec   (850 perm/sec)   p_kst 2.776824e-04   p_cons 5.528708e-01   p_joint 7.751073e-04

Joint ci ratio: 9.192631e-02	ci left: 7.407942e-04	ci right 8.125873e-04	k: 1816	n:2340000
Cons ci ratio: 2.304690e-03	ci left: 5.521994e-01	ci right 5.534739e-01	k: 1293638	n:2340000
KS ci ratio: 1.536155e-01	ci left: 2.568335e-04	ci right 2.999745e-04	k: 650	n:2340000
ZNF492   2340000 perm   2763 sec   (847 perm/sec)   p_kst 2.777778e-04   p_cons 5.528368e-01   p_joint 7.760684e-04

Joint ci ratio: 8.495826e-02	ci left: 8.666460e-04	ci right 9.439541e-04	k: 2126	n:2350000
Cons ci ratio: 2.299623e-03	ci left: 5.522347e-01	ci right 5.535065e-01	k: 1299246	n:2350000
KS ci ratio: 1.530289e-01	ci left: 2.577867e-04	ci right 3.009073e-04	k: 655	n:2350000
ZNF492   2350000 perm   2784 sec   (844 perm/sec)   p_kst 2.787234e-04   p_cons 5.528706e-01   p_joint 9.046809e-04

Joint ci ratio: 8.523966e-02	ci left: 8.571676e-04	ci right 9.338961e-04	k: 2112	n:2360000
Cons ci ratio: 2.294769e-03	ci left: 5.522311e-01	ci right 5.535002e-01	k: 1304763	n:2360000
KS ci ratio: 1.526802e-01	ci left: 2.579169e-04	ci right 3.009520e-04	k: 658	n:2360000
ZNF492   2360000 perm   2806 sec   (841 perm/sec)   p_kst 2.788136e-04   p_cons 5.528657e-01   p_joint 8.949153e-04

Joint ci ratio: 8.505871e-02	ci left: 8.572675e-04	ci right 9.338339e-04	k: 2121	n:2370000
Cons ci ratio: 2.290032e-03	ci left: 5.522089e-01	ci right 5.534753e-01	k: 1310236	n:2370000
KS ci ratio: 1.523338e-01	ci left: 2.580462e-04	ci right 3.009962e-04	k: 661	n:2370000
ZNF492   2370000 perm   2829 sec   (838 perm/sec)   p_kst 2.789030e-04   p_cons 5.528422e-01   p_joint 8.949367e-04

Joint ci ratio: 8.485897e-02	ci left: 8.577779e-04	ci right 9.342012e-04	k: 2131	n:2380000
Cons ci ratio: 2.285197e-03	ci left: 5.522143e-01	ci right 5.534780e-01	k: 1315774	n:2380000
KS ci ratio: 1.517617e-01	ci left: 2.589829e-04	ci right 3.019123e-04	k: 666	n:2380000
ZNF492   2380000 perm   2852 sec   (835 perm/sec)   p_kst 2.798319e-04   p_cons 5.528462e-01   p_joint 8.953782e-04

Joint ci ratio: 8.468043e-02	ci left: 8.578748e-04	ci right 9.341379e-04	k: 2140	n:2390000
Cons ci ratio: 2.280611e-03	ci left: 5.521723e-01	ci right 5.534334e-01	k: 1321199	n:2390000
KS ci ratio: 1.514216e-01	ci left: 2.591069e-04	ci right 3.019518e-04	k: 669	n:2390000
ZNF492   2390000 perm   2873 sec   (832 perm/sec)   p_kst 2.799163e-04   p_cons 5.528029e-01   p_joint 8.953975e-04

Joint ci ratio: 8.002671e-02	ci left: 9.587740e-04	ci right 1.039105e-03	k: 2396	n:2400000
Cons ci ratio: 2.275931e-03	ci left: 5.521569e-01	ci right 5.534154e-01	k: 1326687	n:2400000
KS ci ratio: 1.511961e-01	ci left: 2.588291e-04	ci right 3.015586e-04	k: 671	n:2400000
ZNF492   2400000 perm   2893 sec   (830 perm/sec)   p_kst 2.795833e-04   p_cons 5.527863e-01   p_joint 9.983333e-04

Joint ci ratio: 7.987691e-02	ci left: 9.584554e-04	ci right 1.038602e-03	k: 2405	n:2410000
Cons ci ratio: 2.271021e-03	ci left: 5.521981e-01	ci right 5.534540e-01	k: 1332311	n:2410000
KS ci ratio: 1.510838e-01	ci left: 2.581543e-04	ci right 3.007379e-04	k: 672	n:2410000
ZNF492   2410000 perm   2914 sec   (827 perm/sec)   p_kst 2.788382e-04   p_cons 5.528261e-01   p_joint 9.979253e-04

Joint ci ratio: 7.969492e-02	ci left: 9.589496e-04	ci right 1.038946e-03	k: 2416	n:2420000
Cons ci ratio: 2.266325e-03	ci left: 5.521993e-01	ci right 5.534526e-01	k: 1337839	n:2420000
KS ci ratio: 1.509717e-01	ci left: 2.574852e-04	ci right 2.999240e-04	k: 673	n:2420000
ZNF492   2420000 perm   2934 sec   (825 perm/sec)   p_kst 2.780992e-04   p_cons 5.528260e-01   p_joint 9.983471e-04

Joint ci ratio: 7.966210e-02	ci left: 9.558099e-04	ci right 1.035510e-03	k: 2418	n:2430000
Cons ci ratio: 2.261639e-03	ci left: 5.522046e-01	ci right 5.534553e-01	k: 1343377	n:2430000
KS ci ratio: 1.508599e-01	ci left: 2.568215e-04	ci right 2.991168e-04	k: 674	n:2430000
ZNF492   2430000 perm   2955 sec   (822 perm/sec)   p_kst 2.773663e-04   p_cons 5.528300e-01   p_joint 9.950617e-04

Joint ci ratio: 7.943251e-02	ci left: 9.575163e-04	ci right 1.037118e-03	k: 2432	n:2440000
Cons ci ratio: 2.257020e-03	ci left: 5.522013e-01	ci right 5.534494e-01	k: 1348894	n:2440000
KS ci ratio: 1.505257e-01	ci left: 2.569521e-04	ci right 2.991668e-04	k: 677	n:2440000
ZNF492   2440000 perm   2977 sec   (820 perm/sec)   p_kst 2.774590e-04   p_cons 5.528254e-01   p_joint 9.967213e-04

Joint ci ratio: 7.925354e-02	ci left: 9.580088e-04	ci right 1.037464e-03	k: 2443	n:2450000
Cons ci ratio: 2.252365e-03	ci left: 5.522123e-01	ci right 5.534578e-01	k: 1354446	n:2450000
KS ci ratio: 1.503042e-01	ci left: 2.566890e-04	ci right 2.987927e-04	k: 679	n:2450000
ZNF492   2450000 perm   3000 sec   (817 perm/sec)   p_kst 2.771429e-04   p_cons 5.528351e-01   p_joint 9.971429e-04

Joint ci ratio: 7.755687e-02	ci left: 9.971570e-04	ci right 1.078009e-03	k: 2551	n:2460000
Cons ci ratio: 2.247953e-03	ci left: 5.521760e-01	ci right 5.534190e-01	k: 1359882	n:2460000
KS ci ratio: 1.494277e-01	ci left: 2.587756e-04	ci right 3.009520e-04	k: 687	n:2460000
ZNF492   2460000 perm   3022 sec   (814 perm/sec)   p_kst 2.792683e-04   p_cons 5.527976e-01   p_joint 1.036992e-03

Joint ci ratio: 7.740537e-02	ci left: 9.970901e-04	ci right 1.077771e-03	k: 2561	n:2470000
Cons ci ratio: 2.243426e-03	ci left: 5.521712e-01	ci right 5.534117e-01	k: 1365395	n:2470000
KS ci ratio: 1.491029e-01	ci left: 2.588972e-04	ci right 3.009934e-04	k: 690	n:2470000
ZNF492   2470000 perm   3044 sec   (811 perm/sec)   p_kst 2.793522e-04   p_cons 5.527915e-01   p_joint 1.036842e-03

Joint ci ratio: 7.728483e-02	ci left: 9.962329e-04	ci right 1.076714e-03	k: 2569	n:2480000
Cons ci ratio: 2.238966e-03	ci left: 5.521575e-01	ci right 5.533956e-01	k: 1370886	n:2480000
KS ci ratio: 1.488876e-01	ci left: 2.586296e-04	ci right 3.006163e-04	k: 692	n:2480000
ZNF492   2480000 perm   3065 sec   (809 perm/sec)   p_kst 2.790323e-04   p_cons 5.527766e-01   p_joint 1.035887e-03

Joint ci ratio: 7.720985e-02	ci left: 9.942012e-04	ci right 1.074436e-03	k: 2574	n:2490000
Cons ci ratio: 2.234477e-03	ci left: 5.521561e-01	ci right 5.533916e-01	k: 1376407	n:2490000
KS ci ratio: 1.487804e-01	ci left: 2.579776e-04	ci right 2.998255e-04	k: 693	n:2490000
ZNF492   2490000 perm   3088 sec   (806 perm/sec)   p_kst 2.783133e-04   p_cons 5.527739e-01   p_joint 1.033735e-03

Joint ci ratio: 7.700075e-02	ci left: 9.957165e-04	ci right 1.075847e-03	k: 2588	n:2500000
Cons ci ratio: 2.229924e-03	ci left: 5.521750e-01	ci right 5.534081e-01	k: 1381979	n:2500000
KS ci ratio: 1.485665e-01	ci left: 2.577159e-04	ci right 2.994560e-04	k: 695	n:2500000
ZNF492   2500000 perm   3110 sec   (804 perm/sec)   p_kst 2.780000e-04   p_cons 5.527916e-01   p_joint 1.035200e-03

Joint ci ratio: 7.689692e-02	ci left: 9.944846e-04	ci right 1.074403e-03	k: 2595	n:2510000
Cons ci ratio: 2.225504e-03	ci left: 5.521703e-01	ci right 5.534009e-01	k: 1387492	n:2510000
KS ci ratio: 1.482473e-01	ci left: 2.578400e-04	ci right 2.995025e-04	k: 698	n:2510000
ZNF492   2510000 perm   3131 sec   (802 perm/sec)   p_kst 2.780876e-04   p_cons 5.527857e-01   p_joint 1.033865e-03

Joint ci ratio: 7.677874e-02	ci left: 9.936518e-04	ci right 1.073375e-03	k: 2603	n:2520000
Cons ci ratio: 2.221102e-03	ci left: 5.521676e-01	ci right 5.533958e-01	k: 1393010	n:2520000
KS ci ratio: 1.478249e-01	ci left: 2.583453e-04	ci right 2.999600e-04	k: 702	n:2520000
ZNF492   2520000 perm   3153 sec   (799 perm/sec)   p_kst 2.785714e-04   p_cons 5.527817e-01   p_joint 1.032937e-03

Joint ci ratio: 7.377670e-02	ci left: 1.073495e-03	ci right 1.156112e-03	k: 2819	n:2530000
Cons ci ratio: 2.216665e-03	ci left: 5.521784e-01	ci right 5.534041e-01	k: 1398562	n:2530000
KS ci ratio: 1.470943e-01	ci left: 2.599889e-04	ci right 3.016432e-04	k: 709	n:2530000
ZNF492   2530000 perm   3177 sec   (796 perm/sec)   p_kst 2.802372e-04   p_cons 5.527913e-01   p_joint 1.114229e-03

Joint ci ratio: 6.792667e-02	ci left: 1.264962e-03	ci right 1.354291e-03	k: 3325	n:2540000
Cons ci ratio: 2.212216e-03	ci left: 5.521977e-01	ci right 5.534210e-01	k: 1404136	n:2540000
KS ci ratio: 1.466817e-01	ci left: 2.604823e-04	ci right 3.020883e-04	k: 713	n:2540000
ZNF492   2540000 perm   3199 sec   (794 perm/sec)   p_kst 2.807087e-04   p_cons 5.528094e-01   p_joint 1.309055e-03

Joint ci ratio: 6.780448e-02	ci left: 1.264627e-03	ci right 1.353766e-03	k: 3337	n:2550000
Cons ci ratio: 2.207976e-03	ci left: 5.521762e-01	ci right 5.533971e-01	k: 1409606	n:2550000
KS ci ratio: 1.464767e-01	ci left: 2.602163e-04	ci right 3.017167e-04	k: 715	n:2550000
ZNF492   2550000 perm   3220 sec   (792 perm/sec)   p_kst 2.803922e-04   p_cons 5.527867e-01   p_joint 1.308627e-03

Joint ci ratio: 6.767283e-02	ci left: 1.264679e-03	ci right 1.353642e-03	k: 3350	n:2560000
Cons ci ratio: 2.203682e-03	ci left: 5.521723e-01	ci right 5.533908e-01	k: 1415121	n:2560000
KS ci ratio: 1.462726e-01	ci left: 2.599525e-04	ci right 3.013479e-04	k: 717	n:2560000
ZNF492   2560000 perm   3243 sec   (789 perm/sec)   p_kst 2.800781e-04   p_cons 5.527816e-01   p_joint 1.308594e-03

Joint ci ratio: 6.752185e-02	ci left: 1.265497e-03	ci right 1.354310e-03	k: 3365	n:2570000
Cons ci ratio: 2.199419e-03	ci left: 5.521670e-01	ci right 5.533831e-01	k: 1420632	n:2570000
KS ci ratio: 1.460693e-01	ci left: 2.596907e-04	ci right 3.009820e-04	k: 719	n:2570000
ZNF492   2570000 perm   3265 sec   (787 perm/sec)   p_kst 2.797665e-04   p_cons 5.527751e-01   p_joint 1.309339e-03

Joint ci ratio: 6.740183e-02	ci left: 1.265164e-03	ci right 1.353791e-03	k: 3377	n:2580000
Cons ci ratio: 2.195152e-03	ci left: 5.521682e-01	ci right 5.533820e-01	k: 1426160	n:2580000
KS ci ratio: 1.459680e-01	ci left: 2.590576e-04	ci right 3.002172e-04	k: 720	n:2580000
ZNF492   2580000 perm   3288 sec   (785 perm/sec)   p_kst 2.790698e-04   p_cons 5.527752e-01   p_joint 1.308915e-03

Joint ci ratio: 6.729238e-02	ci left: 1.264455e-03	ci right 1.352882e-03	k: 3388	n:2590000
Cons ci ratio: 2.190869e-03	ci left: 5.521788e-01	ci right 5.533902e-01	k: 1431712	n:2590000
KS ci ratio: 1.458669e-01	ci left: 2.584294e-04	ci right 2.994582e-04	k: 721	n:2590000
ZNF492   2590000 perm   3310 sec   (782 perm/sec)   p_kst 2.783784e-04   p_cons 5.527846e-01   p_joint 1.308108e-03

Joint ci ratio: 6.710446e-02	ci left: 1.266777e-03	ci right 1.355109e-03	k: 3407	n:2600000
Cons ci ratio: 2.186607e-03	ci left: 5.521900e-01	ci right 5.533991e-01	k: 1437266	n:2600000
KS ci ratio: 1.455648e-01	ci left: 2.585472e-04	ci right 2.995024e-04	k: 724	n:2600000
ZNF492   2600000 perm   3333 sec   (780 perm/sec)   p_kst 2.784615e-04   p_cons 5.527946e-01   p_joint 1.310385e-03

Joint ci ratio: 6.687903e-02	ci left: 1.270588e-03	ci right 1.358877e-03	k: 3430	n:2610000
Cons ci ratio: 2.182416e-03	ci left: 5.521908e-01	ci right 5.533976e-01	k: 1442793	n:2610000
KS ci ratio: 1.450654e-01	ci left: 2.594027e-04	ci right 3.003401e-04	k: 729	n:2610000
ZNF492   2610000 perm   3355 sec   (778 perm/sec)   p_kst 2.793103e-04   p_cons 5.527943e-01   p_joint 1.314176e-03

Joint ci ratio: 6.674299e-02	ci left: 1.270992e-03	ci right 1.359123e-03	k: 3444	n:2620000
Cons ci ratio: 2.178309e-03	ci left: 5.521779e-01	ci right 5.533823e-01	k: 1448284	n:2620000
KS ci ratio: 1.443747e-01	ci left: 2.609876e-04	ci right 3.019622e-04	k: 736	n:2620000
ZNF492   2620000 perm   3378 sec   (776 perm/sec)   p_kst 2.809160e-04   p_cons 5.527802e-01   p_joint 1.314504e-03

Joint ci ratio: 6.665603e-02	ci left: 1.269525e-03	ci right 1.357435e-03	k: 3453	n:2630000
Cons ci ratio: 2.174052e-03	ci left: 5.522046e-01	ci right 5.534067e-01	k: 1453879	n:2630000
KS ci ratio: 1.441792e-01	ci left: 2.607283e-04	ci right 3.016020e-04	k: 738	n:2630000
ZNF492   2630000 perm   3405 sec   (772 perm/sec)   p_kst 2.806084e-04   p_cons 5.528057e-01   p_joint 1.312928e-03

Joint ci ratio: 6.655979e-02	ci left: 1.268441e-03	ci right 1.356144e-03	k: 3463	n:2640000
Cons ci ratio: 2.169904e-03	ci left: 5.522117e-01	ci right 5.534116e-01	k: 1459423	n:2640000
KS ci ratio: 1.439846e-01	ci left: 2.604709e-04	ci right 3.012444e-04	k: 740	n:2640000
ZNF492   2640000 perm   3428 sec   (770 perm/sec)   p_kst 2.803030e-04   p_cons 5.528117e-01   p_joint 1.311742e-03

Joint ci ratio: 6.638747e-02	ci left: 1.270334e-03	ci right 1.357932e-03	k: 3481	n:2650000
Cons ci ratio: 2.165854e-03	ci left: 5.522019e-01	ci right 5.533995e-01	k: 1464922	n:2650000
KS ci ratio: 1.436940e-01	ci left: 2.605794e-04	ci right 3.012804e-04	k: 743	n:2650000
ZNF492   2650000 perm   3451 sec   (768 perm/sec)   p_kst 2.803774e-04   p_cons 5.528008e-01   p_joint 1.313585e-03

Joint ci ratio: 6.631140e-02	ci left: 1.268516e-03	ci right 1.355884e-03	k: 3489	n:2660000
Cons ci ratio: 2.161675e-03	ci left: 5.522267e-01	ci right 5.534221e-01	k: 1470513	n:2660000
KS ci ratio: 1.435975e-01	ci left: 2.599622e-04	ci right 3.005372e-04	k: 744	n:2660000
ZNF492   2660000 perm   3475 sec   (766 perm/sec)   p_kst 2.796992e-04   p_cons 5.528244e-01   p_joint 1.311654e-03

Joint ci ratio: 6.612212e-02	ci left: 1.271131e-03	ci right 1.358420e-03	k: 3509	n:2670000
Cons ci ratio: 2.157678e-03	ci left: 5.522154e-01	ci right 5.534085e-01	k: 1476008	n:2670000
KS ci ratio: 1.433093e-01	ci left: 2.600718e-04	ci right 3.005755e-04	k: 747	n:2670000
ZNF492   2670000 perm   3497 sec   (764 perm/sec)   p_kst 2.797753e-04   p_cons 5.528120e-01   p_joint 1.314232e-03

Joint ci ratio: 6.604696e-02	ci left: 1.269324e-03	ci right 1.356386e-03	k: 3517	n:2680000
Cons ci ratio: 2.153610e-03	ci left: 5.522254e-01	ci right 5.534163e-01	k: 1481560	n:2680000
KS ci ratio: 1.430228e-01	ci left: 2.601807e-04	ci right 3.006134e-04	k: 750	n:2680000
ZNF492   2680000 perm   3520 sec   (761 perm/sec)   p_kst 2.798507e-04   p_cons 5.528209e-01   p_joint 1.312313e-03

Joint ci ratio: 6.592527e-02	ci left: 1.269358e-03	ci right 1.356256e-03	k: 3530	n:2690000
Cons ci ratio: 2.149652e-03	ci left: 5.522153e-01	ci right 5.534040e-01	k: 1487058	n:2690000
KS ci ratio: 1.426434e-01	ci left: 2.606473e-04	ci right 3.010360e-04	k: 754	n:2690000
ZNF492   2690000 perm   3542 sec   (759 perm/sec)   p_kst 2.802974e-04   p_cons 5.528097e-01   p_joint 1.312268e-03

Joint ci ratio: 6.579495e-02	ci left: 1.269757e-03	ci right 1.356504e-03	k: 3544	n:2700000
Cons ci ratio: 2.145682e-03	ci left: 5.522130e-01	ci right 5.533995e-01	k: 1492577	n:2700000
KS ci ratio: 1.424548e-01	ci left: 2.603963e-04	ci right 3.006882e-04	k: 756	n:2700000
ZNF492   2700000 perm   3565 sec   (757 perm/sec)   p_kst 2.800000e-04   p_cons 5.528063e-01   p_joint 1.312593e-03

Joint ci ratio: 6.569314e-02	ci left: 1.269064e-03	ci right 1.355624e-03	k: 3555	n:2710000
Cons ci ratio: 2.141641e-03	ci left: 5.522321e-01	ci right 5.534164e-01	k: 1498154	n:2710000
KS ci ratio: 1.423609e-01	ci left: 2.597913e-04	ci right 2.999608e-04	k: 757	n:2710000
ZNF492   2710000 perm   3589 sec   (755 perm/sec)   p_kst 2.793358e-04   p_cons 5.528244e-01   p_joint 1.311808e-03

Joint ci ratio: 7.008279e-02	ci left: 1.108626e-03	ci right 1.189501e-03	k: 3124	n:2720000
Cons ci ratio: 2.137693e-03	ci left: 5.522350e-01	ci right 5.534171e-01	k: 1503687	n:2720000
KS ci ratio: 1.420800e-01	ci left: 2.598998e-04	ci right 3.000002e-04	k: 760	n:2720000
ZNF492   2720000 perm   3612 sec   (753 perm/sec)   p_kst 2.794118e-04   p_cons 5.528261e-01   p_joint 1.148529e-03

Joint ci ratio: 7.027456e-02	ci left: 1.098447e-03	ci right 1.178808e-03	k: 3107	n:2730000
Cons ci ratio: 2.133824e-03	ci left: 5.522246e-01	ci right 5.534046e-01	k: 1509184	n:2730000
KS ci ratio: 1.418008e-01	ci left: 2.600077e-04	ci right 3.000392e-04	k: 763	n:2730000
ZNF492   2730000 perm   3635 sec   (751 perm/sec)   p_kst 2.794872e-04   p_cons 5.528147e-01   p_joint 1.138095e-03

Joint ci ratio: 7.010554e-02	ci left: 1.099816e-03	ci right 1.180076e-03	k: 3122	n:2740000
Cons ci ratio: 2.129983e-03	ci left: 5.522125e-01	ci right 5.533903e-01	k: 1514676	n:2740000
KS ci ratio: 1.418008e-01	ci left: 2.590588e-04	ci right 2.989441e-04	k: 763	n:2740000
ZNF492   2740000 perm   3659 sec   (749 perm/sec)   p_kst 2.784672e-04   p_cons 5.528015e-01   p_joint 1.139416e-03

Joint ci ratio: 6.997123e-02	ci left: 1.100104e-03	ci right 1.180225e-03	k: 3134	n:2750000
Cons ci ratio: 2.126179e-03	ci left: 5.521968e-01	ci right 5.533725e-01	k: 1520158	n:2750000
KS ci ratio: 1.413390e-01	ci left: 2.598705e-04	ci right 2.997396e-04	k: 768	n:2750000
ZNF492   2750000 perm   3683 sec   (747 perm/sec)   p_kst 2.792727e-04   p_cons 5.527847e-01   p_joint 1.139636e-03

Joint ci ratio: 6.987104e-02	ci left: 1.099322e-03	ci right 1.179267e-03	k: 3143	n:2760000
Cons ci ratio: 2.122306e-03	ci left: 5.522019e-01	ci right 5.533755e-01	k: 1525697	n:2760000
KS ci ratio: 1.412473e-01	ci left: 2.592785e-04	ci right 2.990287e-04	k: 769	n:2760000
ZNF492   2760000 perm   3707 sec   (745 perm/sec)   p_kst 2.786232e-04   p_cons 5.527888e-01   p_joint 1.138768e-03

Joint ci ratio: 6.996035e-02	ci left: 1.092516e-03	ci right 1.172071e-03	k: 3135	n:2770000
Cons ci ratio: 2.118466e-03	ci left: 5.522045e-01	ci right 5.533759e-01	k: 1531229	n:2770000
KS ci ratio: 1.412473e-01	ci left: 2.583424e-04	ci right 2.979492e-04	k: 769	n:2770000
ZNF492   2770000 perm   3731 sec   (742 perm/sec)   p_kst 2.776173e-04   p_cons 5.527903e-01   p_joint 1.131769e-03

Joint ci ratio: 6.979359e-02	ci left: 1.093887e-03	ci right 1.173345e-03	k: 3150	n:2780000
Cons ci ratio: 2.114615e-03	ci left: 5.522142e-01	ci right 5.533835e-01	k: 1536781	n:2780000
KS ci ratio: 1.408818e-01	ci left: 2.588012e-04	ci right 2.983670e-04	k: 773	n:2780000
ZNF492   2780000 perm   3755 sec   (740 perm/sec)   p_kst 2.780576e-04   p_cons 5.527989e-01   p_joint 1.133094e-03

Joint ci ratio: 7.060596e-02	ci left: 1.064612e-03	ci right 1.142881e-03	k: 3078	n:2790000
Cons ci ratio: 2.110865e-03	ci left: 5.522052e-01	ci right 5.533724e-01	k: 1542281	n:2790000
KS ci ratio: 1.406096e-01	ci left: 2.589110e-04	ci right 2.984107e-04	k: 776	n:2790000
ZNF492   2790000 perm   3778 sec   (738 perm/sec)   p_kst 2.781362e-04   p_cons 5.527889e-01   p_joint 1.103226e-03

Joint ci ratio: 7.040039e-02	ci left: 1.067126e-03	ci right 1.145341e-03	k: 3096	n:2800000
Cons ci ratio: 2.107025e-03	ci left: 5.522220e-01	ci right 5.533871e-01	k: 1547853	n:2800000
KS ci ratio: 1.402490e-01	ci left: 2.593647e-04	ci right 2.988237e-04	k: 780	n:2800000
ZNF492   2800000 perm   3802 sec   (736 perm/sec)   p_kst 2.785714e-04   p_cons 5.528046e-01   p_joint 1.105714e-03

Joint ci ratio: 7.028702e-02	ci left: 1.066824e-03	ci right 1.144886e-03	k: 3106	n:2810000
Cons ci ratio: 2.103185e-03	ci left: 5.522437e-01	ci right 5.534067e-01	k: 1553439	n:2810000
KS ci ratio: 1.398912e-01	ci left: 2.598153e-04	ci right 2.992336e-04	k: 784	n:2810000
ZNF492   2810000 perm   3826 sec   (734 perm/sec)   p_kst 2.790036e-04   p_cons 5.528253e-01   p_joint 1.105338e-03

Joint ci ratio: 7.012916e-02	ci left: 1.067918e-03	ci right 1.145878e-03	k: 3120	n:2820000
Cons ci ratio: 2.099438e-03	ci left: 5.522482e-01	ci right 5.534092e-01	k: 1558977	n:2820000
KS ci ratio: 1.395361e-01	ci left: 2.602629e-04	ci right 2.996405e-04	k: 788	n:2820000
ZNF492   2820000 perm   3850 sec   (732 perm/sec)   p_kst 2.794326e-04   p_cons 5.528287e-01   p_joint 1.106383e-03

Joint ci ratio: 7.000590e-02	ci left: 1.067964e-03	ci right 1.145784e-03	k: 3131	n:2830000
Cons ci ratio: 2.095663e-03	ci left: 5.522640e-01	ci right 5.534229e-01	k: 1564547	n:2830000
KS ci ratio: 1.395362e-01	ci left: 2.593432e-04	ci right 2.985817e-04	k: 788	n:2830000
ZNF492   2830000 perm   3874 sec   (731 perm/sec)   p_kst 2.784452e-04   p_cons 5.528435e-01   p_joint 1.106360e-03

Joint ci ratio: 7.271774e-02	ci left: 9.850062e-04	ci right 1.059679e-03	k: 2902	n:2840000
Cons ci ratio: 2.024284e-03	ci left: 5.684664e-01	ci right 5.696187e-01	k: 1616081	n:2840000
KS ci ratio: 1.393597e-01	ci left: 2.591097e-04	ci right 2.982591e-04	k: 790	n:2840000
ZNF492   2840000 perm   3898 sec   (729 perm/sec)   p_kst 2.781690e-04   p_cons 5.690426e-01   p_joint 1.021831e-03

Joint ci ratio: 6.241553e-02	ci left: 1.338960e-03	ci right 1.425567e-03	k: 3938	n:2850000
Cons ci ratio: 2.020792e-03	ci left: 5.684522e-01	ci right 5.696024e-01	k: 1621728	n:2850000
KS ci ratio: 1.390962e-01	ci left: 2.592165e-04	ci right 2.983019e-04	k: 793	n:2850000
ZNF492   2850000 perm   3922 sec   (727 perm/sec)   p_kst 2.782456e-04   p_cons 5.690274e-01   p_joint 1.381754e-03

Joint ci ratio: 6.340666e-02	ci left: 1.292291e-03	ci right 1.377255e-03	k: 3816	n:2860000
Cons ci ratio: 2.017159e-03	ci left: 5.684769e-01	ci right 5.696251e-01	k: 1627486	n:2860000
KS ci ratio: 1.388342e-01	ci left: 2.593226e-04	ci right 2.983442e-04	k: 796	n:2860000
ZNF492   2860000 perm   3946 sec   (725 perm/sec)   p_kst 2.783217e-04   p_cons 5.690510e-01   p_joint 1.334266e-03

Joint ci ratio: 6.331552e-02	ci left: 1.291560e-03	ci right 1.376350e-03	k: 3827	n:2870000
Cons ci ratio: 2.013670e-03	ci left: 5.684711e-01	ci right 5.696173e-01	k: 1633157	n:2870000
KS ci ratio: 1.387472e-01	ci left: 2.587554e-04	ci right 2.976652e-04	k: 797	n:2870000
ZNF492   2870000 perm   3971 sec   (723 perm/sec)   p_kst 2.777003e-04   p_cons 5.690443e-01   p_joint 1.333449e-03

Joint ci ratio: 6.392897e-02	ci left: 1.262131e-03	ci right 1.345821e-03	k: 3754	n:2880000
Cons ci ratio: 2.010294e-03	ci left: 5.684421e-01	ci right 5.695863e-01	k: 1638761	n:2880000
KS ci ratio: 1.384007e-01	ci left: 2.591977e-04	ci right 2.980687e-04	k: 801	n:2880000
ZNF492   2880000 perm   3995 sec   (721 perm/sec)   p_kst 2.781250e-04   p_cons 5.690142e-01   p_joint 1.303472e-03

Joint ci ratio: 6.392912e-02	ci left: 1.257764e-03	ci right 1.341164e-03	k: 3754	n:2890000
Cons ci ratio: 2.006824e-03	ci left: 5.684402e-01	ci right 5.695825e-01	k: 1644443	n:2890000
KS ci ratio: 1.379712e-01	ci left: 2.599711e-04	ci right 2.988272e-04	k: 806	n:2890000
ZNF492   2890000 perm   4020 sec   (719 perm/sec)   p_kst 2.788927e-04   p_cons 5.690114e-01   p_joint 1.298962e-03

Joint ci ratio: 6.381874e-02	ci left: 1.257838e-03	ci right 1.341094e-03	k: 3767	n:2900000
Cons ci ratio: 2.003332e-03	ci left: 5.684484e-01	ci right 5.695887e-01	k: 1650154	n:2900000
KS ci ratio: 1.377155e-01	ci left: 2.600734e-04	ci right 2.988669e-04	k: 809	n:2900000
ZNF492   2900000 perm   4044 sec   (717 perm/sec)   p_kst 2.789655e-04   p_cons 5.690186e-01   p_joint 1.298966e-03

Joint ci ratio: 6.369207e-02	ci left: 1.258588e-03	ci right 1.341722e-03	k: 3782	n:2910000
Cons ci ratio: 1.999905e-03	ci left: 5.684449e-01	ci right 5.695832e-01	k: 1655831	n:2910000
KS ci ratio: 1.377156e-01	ci left: 2.591797e-04	ci right 2.978399e-04	k: 809	n:2910000
ZNF492   2910000 perm   4069 sec   (715 perm/sec)   p_kst 2.780069e-04   p_cons 5.690141e-01   p_joint 1.299656e-03

Joint ci ratio: 6.428190e-02	ci left: 1.231025e-03	ci right 1.313120e-03	k: 3713	n:2920000
Cons ci ratio: 1.996421e-03	ci left: 5.684598e-01	ci right 5.695962e-01	k: 1661562	n:2920000
KS ci ratio: 1.373768e-01	ci left: 2.596148e-04	ci right 2.982368e-04	k: 813	n:2920000
ZNF492   2920000 perm   4093 sec   (713 perm/sec)   p_kst 2.784247e-04   p_cons 5.690281e-01   p_joint 1.271575e-03

Joint ci ratio: 6.421283e-02	ci left: 1.229510e-03	ci right 1.311412e-03	k: 3721	n:2930000
Cons ci ratio: 1.993071e-03	ci left: 5.684460e-01	ci right 5.695804e-01	k: 1667209	n:2930000
KS ci ratio: 1.371243e-01	ci left: 2.597175e-04	ci right 2.982780e-04	k: 816	n:2930000
ZNF492   2930000 perm   4118 sec   (712 perm/sec)   p_kst 2.784983e-04   p_cons 5.690133e-01   p_joint 1.269966e-03

Joint ci ratio: 6.410098e-02	ci left: 1.229679e-03	ci right 1.311445e-03	k: 3734	n:2940000
Cons ci ratio: 1.989604e-03	ci left: 5.684653e-01	ci right 5.695978e-01	k: 1672953	n:2940000
KS ci ratio: 1.366235e-01	ci left: 2.608051e-04	ci right 2.993741e-04	k: 822	n:2940000
ZNF492   2940000 perm   4142 sec   (710 perm/sec)   p_kst 2.795918e-04   p_cons 5.690316e-01   p_joint 1.270068e-03

Joint ci ratio: 6.401537e-02	ci left: 1.228846e-03	ci right 1.310443e-03	k: 3744	n:2950000
Cons ci ratio: 1.986167e-03	ci left: 5.684818e-01	ci right 5.696123e-01	k: 1678689	n:2950000
KS ci ratio: 1.362926e-01	ci left: 2.612306e-04	ci right 2.997614e-04	k: 826	n:2950000
ZNF492   2950000 perm   4167 sec   (708 perm/sec)   p_kst 2.800000e-04   p_cons 5.690471e-01   p_joint 1.269153e-03

Joint ci ratio: 6.394715e-02	ci left: 1.227354e-03	ci right 1.308762e-03	k: 3752	n:2960000
Cons ci ratio: 1.982834e-03	ci left: 5.684765e-01	ci right 5.696051e-01	k: 1684361	n:2960000
KS ci ratio: 1.362103e-01	ci left: 2.606744e-04	ci right 2.990981e-04	k: 827	n:2960000
ZNF492   2960000 perm   4192 sec   (706 perm/sec)   p_kst 2.793919e-04   p_cons 5.690409e-01   p_joint 1.267568e-03

Joint ci ratio: 6.381972e-02	ci left: 1.228191e-03	ci right 1.309486e-03	k: 3767	n:2970000
Cons ci ratio: 1.979511e-03	ci left: 5.684729e-01	ci right 5.695997e-01	k: 1690038	n:2970000
KS ci ratio: 1.359642e-01	ci left: 2.607724e-04	ci right 2.991355e-04	k: 830	n:2970000
ZNF492   2970000 perm   4217 sec   (704 perm/sec)   p_kst 2.794613e-04   p_cons 5.690364e-01   p_joint 1.268350e-03

Joint ci ratio: 6.373523e-02	ci left: 1.227372e-03	ci right 1.308501e-03	k: 3777	n:2980000
Cons ci ratio: 1.976128e-03	ci left: 5.684885e-01	ci right 5.696134e-01	k: 1695772	n:2980000
KS ci ratio: 1.358009e-01	ci left: 2.605457e-04	ci right 2.988256e-04	k: 832	n:2980000
ZNF492   2980000 perm   4242 sec   (703 perm/sec)   p_kst 2.791946e-04   p_cons 5.690510e-01   p_joint 1.267450e-03

Joint ci ratio: 6.918365e-02	ci left: 1.035462e-03	ci right 1.109992e-03	k: 3206	n:2990000
Cons ci ratio: 1.972730e-03	ci left: 5.685120e-01	ci right 5.696350e-01	k: 1701530	n:2990000
KS ci ratio: 1.357195e-01	ci left: 2.599974e-04	ci right 2.981720e-04	k: 833	n:2990000
ZNF492   2990000 perm   4267 sec   (701 perm/sec)   p_kst 2.785953e-04   p_cons 5.690736e-01   p_joint 1.072241e-03

Joint ci ratio: 7.060869e-02	ci left: 9.900883e-04	ci right 1.062880e-03	k: 3078	n:3000000
Cons ci ratio: 1.969495e-03	ci left: 5.684991e-01	ci right 5.696201e-01	k: 1707179	n:3000000
KS ci ratio: 1.353952e-01	ci left: 2.604188e-04	ci right 2.985566e-04	k: 837	n:3000000
ZNF492   3000000 perm   4292 sec   (699 perm/sec)   p_kst 2.790000e-04   p_cons 5.690597e-01   p_joint 1.026000e-03

Joint ci ratio: 7.156922e-02	ci left: 9.600401e-04	ci right 1.031623e-03	k: 2996	n:3010000
Cons ci ratio: 1.966142e-03	ci left: 5.685197e-01	ci right 5.696389e-01	k: 1712929	n:3010000
KS ci ratio: 1.349930e-01	ci left: 2.611586e-04	ci right 2.992820e-04	k: 842	n:3010000
ZNF492   3010000 perm   4317 sec   (697 perm/sec)   p_kst 2.797342e-04   p_cons 5.690794e-01   p_joint 9.953488e-04

Joint ci ratio: 7.141447e-02	ci left: 9.610889e-04	ci right 1.032589e-03	k: 3009	n:3020000
Cons ci ratio: 1.962890e-03	ci left: 5.685191e-01	ci right 5.696364e-01	k: 1718615	n:3020000
KS ci ratio: 1.347535e-01	ci left: 2.612537e-04	ci right 2.993179e-04	k: 845	n:3020000
ZNF492   3020000 perm   4343 sec   (695 perm/sec)   p_kst 2.798013e-04   p_cons 5.690778e-01   p_joint 9.963576e-04

Joint ci ratio: 7.124892e-02	ci left: 9.624551e-04	ci right 1.033884e-03	k: 3023	n:3030000
Cons ci ratio: 1.959752e-03	ci left: 5.684940e-01	ci right 5.696095e-01	k: 1724227	n:3030000
KS ci ratio: 1.345152e-01	ci left: 2.613482e-04	ci right 2.993535e-04	k: 848	n:3030000
ZNF492   3030000 perm   4368 sec   (694 perm/sec)   p_kst 2.798680e-04   p_cons 5.690518e-01   p_joint 9.976898e-04

Joint ci ratio: 7.113140e-02	ci left: 9.625200e-04	ci right 1.033831e-03	k: 3033	n:3040000
Cons ci ratio: 1.956420e-03	ci left: 5.685217e-01	ci right 5.696354e-01	k: 1729999	n:3040000
KS ci ratio: 1.341208e-01	ci left: 2.620780e-04	ci right 3.000687e-04	k: 853	n:3040000
ZNF492   3040000 perm   4394 sec   (692 perm/sec)   p_kst 2.805921e-04   p_cons 5.690786e-01   p_joint 9.976974e-04

Joint ci ratio: 7.114326e-02	ci left: 9.590421e-04	ci right 1.030107e-03	k: 3032	n:3050000
Cons ci ratio: 1.953217e-03	ci left: 5.685207e-01	ci right 5.696326e-01	k: 1735684	n:3050000
KS ci ratio: 1.339640e-01	ci left: 2.618525e-04	ci right 2.997626e-04	k: 855	n:3050000
ZNF492   3050000 perm   4419 sec   (690 perm/sec)   p_kst 2.803279e-04   p_cons 5.690767e-01   p_joint 9.940984e-04

Joint ci ratio: 7.102626e-02	ci left: 9.591179e-04	ci right 1.030067e-03	k: 3042	n:3060000
Cons ci ratio: 1.950057e-03	ci left: 5.685132e-01	ci right 5.696232e-01	k: 1741349	n:3060000
KS ci ratio: 1.338859e-01	ci left: 2.613126e-04	ci right 2.991207e-04	k: 856	n:3060000
ZNF492   3060000 perm   4445 sec   (688 perm/sec)   p_kst 2.797386e-04   p_cons 5.690683e-01   p_joint 9.941176e-04

Joint ci ratio: 7.082861e-02	ci left: 9.614330e-04	ci right 1.032348e-03	k: 3059	n:3070000
Cons ci ratio: 1.946900e-03	ci left: 5.685087e-01	ci right 5.696169e-01	k: 1747023	n:3070000
KS ci ratio: 1.333423e-01	ci left: 2.626654e-04	ci right 3.005027e-04	k: 863	n:3070000
ZNF492   3070000 perm   4470 sec   (687 perm/sec)   p_kst 2.811075e-04   p_cons 5.690629e-01   p_joint 9.964169e-04

Joint ci ratio: 7.079400e-02	ci left: 9.592682e-04	ci right 1.029987e-03	k: 3062	n:3080000
Cons ci ratio: 1.943748e-03	ci left: 5.685068e-01	ci right 5.696132e-01	k: 1752705	n:3080000
KS ci ratio: 1.333424e-01	ci left: 2.618125e-04	ci right 2.995270e-04	k: 863	n:3080000
ZNF492   3080000 perm   4496 sec   (685 perm/sec)   p_kst 2.801948e-04   p_cons 5.690601e-01   p_joint 9.941558e-04

Joint ci ratio: 7.060975e-02	ci left: 9.612503e-04	ci right 1.031923e-03	k: 3078	n:3090000
Cons ci ratio: 1.940581e-03	ci left: 5.685124e-01	ci right 5.696170e-01	k: 1758410	n:3090000
KS ci ratio: 1.330348e-01	ci left: 2.622166e-04	ci right 2.998953e-04	k: 867	n:3090000
ZNF492   3090000 perm   4522 sec   (683 perm/sec)   p_kst 2.805825e-04   p_cons 5.690647e-01   p_joint 9.961165e-04

Joint ci ratio: 7.216318e-02	ci left: 9.166448e-04	ci right 9.855831e-04	k: 2947	n:3100000
Cons ci ratio: 1.937496e-03	ci left: 5.685014e-01	ci right 5.696043e-01	k: 1764064	n:3100000
KS ci ratio: 1.327293e-01	ci left: 2.626182e-04	ci right 3.002611e-04	k: 871	n:3100000
ZNF492   3100000 perm   4548 sec   (682 perm/sec)   p_kst 2.809677e-04   p_cons 5.690529e-01   p_joint 9.506452e-04

Joint ci ratio: 7.199238e-02	ci left: 9.181179e-04	ci right 9.869968e-04	k: 2961	n:3110000
Cons ci ratio: 1.934503e-03	ci left: 5.684706e-01	ci right 5.695717e-01	k: 1769656	n:3110000
KS ci ratio: 1.325015e-01	ci left: 2.627064e-04	ci right 3.002922e-04	k: 874	n:3110000
ZNF492   3110000 perm   4574 sec   (680 perm/sec)   p_kst 2.810289e-04   p_cons 5.690212e-01   p_joint 9.520900e-04

Joint ci ratio: 7.191962e-02	ci left: 9.170637e-04	ci right 9.857910e-04	k: 2967	n:3120000
Cons ci ratio: 1.931551e-03	ci left: 5.684333e-01	ci right 5.695326e-01	k: 1775227	n:3120000
KS ci ratio: 1.323504e-01	ci left: 2.624842e-04	ci right 2.999920e-04	k: 876	n:3120000
ZNF492   3120000 perm   4600 sec   (678 perm/sec)   p_kst 2.807692e-04   p_cons 5.689830e-01   p_joint 9.509615e-04

Joint ci ratio: 7.176259e-02	ci left: 9.182126e-04	ci right 9.868694e-04	k: 2980	n:3130000
Cons ci ratio: 1.928411e-03	ci left: 5.684473e-01	ci right 5.695449e-01	k: 1780958	n:3130000
KS ci ratio: 1.323504e-01	ci left: 2.616456e-04	ci right 2.990336e-04	k: 876	n:3130000
ZNF492   3130000 perm   4626 sec   (677 perm/sec)   p_kst 2.798722e-04   p_cons 5.689962e-01   p_joint 9.520767e-04

Joint ci ratio: 7.160658e-02	ci left: 9.193543e-04	ci right 9.879409e-04	k: 2993	n:3140000
Cons ci ratio: 1.925264e-03	ci left: 5.684670e-01	ci right 5.695628e-01	k: 1786707	n:3140000
KS ci ratio: 1.319747e-01	ci left: 2.623520e-04	ci right 2.997262e-04	k: 881	n:3140000
ZNF492   3140000 perm   4652 sec   (675 perm/sec)   p_kst 2.805732e-04   p_cons 5.690150e-01   p_joint 9.531847e-04

Joint ci ratio: 7.148729e-02	ci left: 9.195535e-04	ci right 9.880359e-04	k: 3003	n:3150000
Cons ci ratio: 1.922075e-03	ci left: 5.685012e-01	ci right 5.695952e-01	k: 1792502	n:3150000
KS ci ratio: 1.316764e-01	ci left: 2.627471e-04	ci right 3.000864e-04	k: 885	n:3150000
ZNF492   3150000 perm   4678 sec   (673 perm/sec)   p_kst 2.809524e-04   p_cons 5.690483e-01   p_joint 9.533333e-04

Joint ci ratio: 7.136860e-02	ci left: 9.197515e-04	ci right 9.881303e-04	k: 3013	n:3160000
Cons ci ratio: 1.919089e-03	ci left: 5.684873e-01	ci right 5.695796e-01	k: 1798146	n:3160000
KS ci ratio: 1.311592e-01	ci left: 2.640580e-04	ci right 3.014247e-04	k: 892	n:3160000
ZNF492   3160000 perm   4705 sec   (672 perm/sec)   p_kst 2.822785e-04   p_cons 5.690335e-01   p_joint 9.534810e-04

Joint ci ratio: 7.122692e-02	ci left: 9.205681e-04	ci right 9.888661e-04	k: 3025	n:3170000
Cons ci ratio: 1.915963e-03	ci left: 5.685130e-01	ci right 5.696036e-01	k: 1803915	n:3170000
KS ci ratio: 1.308665e-01	ci left: 2.644455e-04	ci right 3.017770e-04	k: 896	n:3170000
ZNF492   3170000 perm   4731 sec   (670 perm/sec)   p_kst 2.826498e-04   p_cons 5.690584e-01   p_joint 9.542587e-04

Joint ci ratio: 7.114471e-02	ci left: 9.198353e-04	ci right 9.879969e-04	k: 3032	n:3180000
Cons ci ratio: 1.912856e-03	ci left: 5.685376e-01	ci right 5.696264e-01	k: 1809681	n:3180000
KS ci ratio: 1.308665e-01	ci left: 2.636139e-04	ci right 3.008280e-04	k: 896	n:3180000
ZNF492   3180000 perm   4758 sec   (668 perm/sec)   p_kst 2.817610e-04   p_cons 5.690821e-01   p_joint 9.534591e-04

Joint ci ratio: 7.098102e-02	ci left: 9.212626e-04	ci right 9.893664e-04	k: 3046	n:3190000
Cons ci ratio: 1.909857e-03	ci left: 5.685379e-01	ci right 5.696250e-01	k: 1815370	n:3190000
KS ci ratio: 1.303588e-01	ci left: 2.649102e-04	ci right 3.021510e-04	k: 903	n:3190000
ZNF492   3190000 perm   4785 sec   (667 perm/sec)   p_kst 2.830721e-04   p_cons 5.690815e-01   p_joint 9.548589e-04

Joint ci ratio: 7.093454e-02	ci left: 9.196114e-04	ci right 9.875468e-04	k: 3050	n:3200000
Cons ci ratio: 1.906900e-03	ci left: 5.685313e-01	ci right 5.696167e-01	k: 1821037	n:3200000
KS ci ratio: 1.302868e-01	ci left: 2.643847e-04	ci right 3.015294e-04	k: 904	n:3200000
ZNF492   3200000 perm   4811 sec   (665 perm/sec)   p_kst 2.825000e-04   p_cons 5.690741e-01   p_joint 9.531250e-04

Joint ci ratio: 7.083015e-02	ci left: 9.195006e-04	ci right 9.873238e-04	k: 3059	n:3210000
Cons ci ratio: 1.903986e-03	ci left: 5.685169e-01	ci right 5.696007e-01	k: 1826679	n:3210000
KS ci ratio: 1.302149e-01	ci left: 2.638624e-04	ci right 3.009118e-04	k: 905	n:3210000
ZNF492   3210000 perm   4838 sec   (664 perm/sec)   p_kst 2.819315e-04   p_cons 5.690589e-01   p_joint 9.529595e-04

Joint ci ratio: 7.073776e-02	ci left: 9.190855e-04	ci right 9.867860e-04	k: 3067	n:3220000
Cons ci ratio: 1.901035e-03	ci left: 5.685157e-01	ci right 5.695978e-01	k: 1832363	n:3220000
KS ci ratio: 1.302149e-01	ci left: 2.630429e-04	ci right 2.999773e-04	k: 905	n:3220000
ZNF492   3220000 perm   4864 sec   (662 perm/sec)   p_kst 2.810559e-04   p_cons 5.690568e-01   p_joint 9.524845e-04

Joint ci ratio: 7.066873e-02	ci left: 9.180648e-04	ci right 9.856214e-04	k: 3073	n:3230000
Cons ci ratio: 1.898218e-03	ci left: 5.684836e-01	ci right 5.695640e-01	k: 1837947	n:3230000
KS ci ratio: 1.300715e-01	ci left: 2.628276e-04	ci right 2.996879e-04	k: 907	n:3230000
ZNF492   3230000 perm   4891 sec   (660 perm/sec)   p_kst 2.808050e-04   p_cons 5.690238e-01   p_joint 9.513932e-04

Joint ci ratio: 7.050831e-02	ci left: 9.194760e-04	ci right 9.869766e-04	k: 3087	n:3240000
Cons ci ratio: 1.895353e-03	ci left: 5.684670e-01	ci right 5.695458e-01	k: 1843581	n:3240000
KS ci ratio: 1.299285e-01	ci left: 2.626136e-04	ci right 2.994003e-04	k: 909	n:3240000
ZNF492   3240000 perm   4918 sec   (659 perm/sec)   p_kst 2.805556e-04   p_cons 5.690065e-01   p_joint 9.527778e-04

Joint ci ratio: 7.039441e-02	ci left: 9.196696e-04	ci right 9.870708e-04	k: 3097	n:3250000
Cons ci ratio: 1.892439e-03	ci left: 5.684669e-01	ci right 5.695440e-01	k: 1849268	n:3250000
KS ci ratio: 1.295729e-01	ci left: 2.632941e-04	ci right 3.000674e-04	k: 914	n:3250000
ZNF492   3250000 perm   4946 sec   (657 perm/sec)   p_kst 2.812308e-04   p_cons 5.690055e-01   p_joint 9.529231e-04

Joint ci ratio: 7.029239e-02	ci left: 9.195607e-04	ci right 9.868523e-04	k: 3106	n:3260000
Cons ci ratio: 1.889463e-03	ci left: 5.684861e-01	ci right 5.695616e-01	k: 1855018	n:3260000
KS ci ratio: 1.293610e-01	ci left: 2.633769e-04	ci right 3.000970e-04	k: 917	n:3260000
ZNF492   3260000 perm   4973 sec   (656 perm/sec)   p_kst 2.812883e-04   p_cons 5.690239e-01   p_joint 9.527607e-04

Joint ci ratio: 6.380649e-02	ci left: 1.116113e-03	ci right 1.189974e-03	k: 3769	n:3270000
Cons ci ratio: 1.886587e-03	ci left: 5.684829e-01	ci right 5.695567e-01	k: 1860695	n:3270000
KS ci ratio: 1.290101e-01	ci left: 2.640511e-04	ci right 3.007577e-04	k: 922	n:3270000
ZNF492   3270000 perm   5000 sec   (654 perm/sec)   p_kst 2.819572e-04   p_cons 5.690199e-01   p_joint 1.152599e-03

Joint ci ratio: 6.369674e-02	ci left: 1.116610e-03	ci right 1.190372e-03	k: 3782	n:3280000
Cons ci ratio: 1.883672e-03	ci left: 5.684934e-01	ci right 5.695656e-01	k: 1866417	n:3280000
KS ci ratio: 1.286621e-01	ci left: 2.647213e-04	ci right 3.014142e-04	k: 927	n:3280000
ZNF492   3280000 perm   5028 sec   (652 perm/sec)   p_kst 2.826220e-04   p_cons 5.690296e-01   p_joint 1.153049e-03

Joint ci ratio: 6.359595e-02	ci left: 1.116806e-03	ci right 1.190460e-03	k: 3794	n:3290000
Cons ci ratio: 1.880739e-03	ci left: 5.685121e-01	ci right 5.695826e-01	k: 1872166	n:3290000
KS ci ratio: 1.284546e-01	ci left: 2.647992e-04	ci right 3.014393e-04	k: 930	n:3290000
ZNF492   3290000 perm   5056 sec   (651 perm/sec)   p_kst 2.826748e-04   p_cons 5.690474e-01   p_joint 1.153191e-03

Joint ci ratio: 6.348729e-02	ci left: 1.117298e-03	ci right 1.190854e-03	k: 3807	n:3300000
Cons ci ratio: 1.877897e-03	ci left: 5.685103e-01	ci right 5.695792e-01	k: 1877848	n:3300000
KS ci ratio: 1.281110e-01	ci left: 2.654634e-04	ci right 3.020895e-04	k: 935	n:3300000
ZNF492   3300000 perm   5084 sec   (649 perm/sec)   p_kst 2.833333e-04   p_cons 5.690448e-01   p_joint 1.153636e-03

Joint ci ratio: 6.340411e-02	ci left: 1.116896e-03	ci right 1.190325e-03	k: 3817	n:3310000
Cons ci ratio: 1.875113e-03	ci left: 5.684968e-01	ci right 5.695641e-01	k: 1883491	n:3310000
KS ci ratio: 1.280427e-01	ci left: 2.649538e-04	ci right 3.014887e-04	k: 936	n:3310000
ZNF492   3310000 perm   5111 sec   (648 perm/sec)   p_kst 2.827795e-04   p_cons 5.690305e-01   p_joint 1.153172e-03

Joint ci ratio: 6.332126e-02	ci left: 1.116496e-03	ci right 1.189800e-03	k: 3827	n:3320000
Cons ci ratio: 1.872248e-03	ci left: 5.685078e-01	ci right 5.695734e-01	k: 1889215	n:3320000
KS ci ratio: 1.279063e-01	ci left: 2.647389e-04	ci right 3.012023e-04	k: 938	n:3320000
ZNF492   3320000 perm   5139 sec   (646 perm/sec)   p_kst 2.825301e-04   p_cons 5.690407e-01   p_joint 1.152711e-03

Joint ci ratio: 6.323872e-02	ci left: 1.116099e-03	ci right 1.189277e-03	k: 3837	n:3330000
Cons ci ratio: 1.869396e-03	ci left: 5.685187e-01	ci right 5.695827e-01	k: 1894939	n:3330000
KS ci ratio: 1.277703e-01	ci left: 2.645252e-04	ci right 3.009176e-04	k: 940	n:3330000
ZNF492   3330000 perm   5167 sec   (645 perm/sec)   p_kst 2.822823e-04   p_cons 5.690508e-01   p_joint 1.152252e-03

Joint ci ratio: 6.318118e-02	ci left: 1.114820e-03	ci right 1.187846e-03	k: 3844	n:3340000
Cons ci ratio: 1.866569e-03	ci left: 5.685265e-01	ci right 5.695890e-01	k: 1900653	n:3340000
KS ci ratio: 1.274995e-01	ci left: 2.648926e-04	ci right 3.012524e-04	k: 944	n:3340000
ZNF492   3340000 perm   5194 sec   (643 perm/sec)   p_kst 2.826347e-04   p_cons 5.690578e-01   p_joint 1.150898e-03

Joint ci ratio: 6.305826e-02	ci left: 1.115899e-03	ci right 1.188848e-03	k: 3859	n:3350000
Cons ci ratio: 1.863854e-03	ci left: 5.685080e-01	ci right 5.695689e-01	k: 1906279	n:3350000
KS ci ratio: 1.272976e-01	ci left: 2.649689e-04	ci right 3.012772e-04	k: 947	n:3350000
ZNF492   3350000 perm   5222 sec   (642 perm/sec)   p_kst 2.826866e-04   p_cons 5.690385e-01   p_joint 1.151940e-03

Joint ci ratio: 6.298490e-02	ci left: 1.115214e-03	ci right 1.188031e-03	k: 3868	n:3360000
Cons ci ratio: 1.861177e-03	ci left: 5.684828e-01	ci right 5.695421e-01	k: 1911882	n:3360000
KS ci ratio: 1.272306e-01	ci left: 2.644684e-04	ci right 3.006876e-04	k: 948	n:3360000
ZNF492   3360000 perm   5249 sec   (640 perm/sec)   p_kst 2.821429e-04   p_cons 5.690125e-01   p_joint 1.151190e-03

Joint ci ratio: 6.300947e-02	ci left: 1.111029e-03	ci right 1.183601e-03	k: 3865	n:3370000
Cons ci ratio: 1.858436e-03	ci left: 5.684776e-01	ci right 5.695353e-01	k: 1917552	n:3370000
KS ci ratio: 1.269633e-01	ci left: 2.648328e-04	ci right 3.010201e-04	k: 952	n:3370000
ZNF492   3370000 perm   5277 sec   (639 perm/sec)   p_kst 2.824926e-04   p_cons 5.690065e-01   p_joint 1.146884e-03

Joint ci ratio: 6.287944e-02	ci left: 1.112401e-03	ci right 1.184908e-03	k: 3881	n:3380000
Cons ci ratio: 1.855686e-03	ci left: 5.684781e-01	ci right 5.695342e-01	k: 1923241	n:3380000
KS ci ratio: 1.266976e-01	ci left: 2.651952e-04	ci right 3.013504e-04	k: 956	n:3380000
ZNF492   3380000 perm   5305 sec   (637 perm/sec)   p_kst 2.828402e-04   p_cons 5.690062e-01   p_joint 1.148225e-03

Joint ci ratio: 6.888768e-02	ci left: 9.213985e-04	ci right 9.874233e-04	k: 3234	n:3390000
Cons ci ratio: 1.852991e-03	ci left: 5.684673e-01	ci right 5.695219e-01	k: 1928892	n:3390000
KS ci ratio: 1.265655e-01	ci left: 2.649842e-04	ci right 3.010701e-04	k: 958	n:3390000
ZNF492   3390000 perm   5333 sec   (636 perm/sec)   p_kst 2.825959e-04   p_cons 5.689947e-01   p_joint 9.539823e-04

Joint ci ratio: 5.707269e-02	ci left: 1.346038e-03	ci right 1.425404e-03	k: 4710	n:3400000
Cons ci ratio: 1.850232e-03	ci left: 5.684766e-01	ci right 5.695297e-01	k: 1934611	n:3400000
KS ci ratio: 1.264337e-01	ci left: 2.647745e-04	ci right 3.007915e-04	k: 960	n:3400000
ZNF492   3400000 perm   5361 sec   (634 perm/sec)   p_kst 2.823529e-04   p_cons 5.690032e-01   p_joint 1.385294e-03

Joint ci ratio: 5.698808e-02	ci left: 1.346137e-03	ci right 1.425388e-03	k: 4724	n:3410000
Cons ci ratio: 1.847520e-03	ci left: 5.684765e-01	ci right 5.695280e-01	k: 1940298	n:3410000
KS ci ratio: 1.263024e-01	ci left: 2.645660e-04	ci right 3.005144e-04	k: 962	n:3410000
ZNF492   3410000 perm   5390 sec   (633 perm/sec)   p_kst 2.821114e-04   p_cons 5.690023e-01   p_joint 1.385337e-03

Joint ci ratio: 5.692790e-02	ci left: 1.345083e-03	ci right 1.424186e-03	k: 4734	n:3420000
Cons ci ratio: 1.844876e-03	ci left: 5.684615e-01	ci right 5.695115e-01	k: 1945934	n:3420000
KS ci ratio: 1.261714e-01	ci left: 2.643587e-04	ci right 3.002390e-04	k: 964	n:3420000
ZNF492   3420000 perm   5419 sec   (631 perm/sec)   p_kst 2.818713e-04   p_cons 5.689865e-01   p_joint 1.384211e-03

Joint ci ratio: 5.684992e-02	ci left: 1.344898e-03	ci right 1.423878e-03	k: 4747	n:3430000
Cons ci ratio: 1.842213e-03	ci left: 5.684547e-01	ci right 5.695032e-01	k: 1951598	n:3430000
KS ci ratio: 1.259758e-01	ci left: 2.644350e-04	ci right 3.002659e-04	k: 967	n:3430000
ZNF492   3430000 perm   5447 sec   (630 perm/sec)   p_kst 2.819242e-04   p_cons 5.689790e-01   p_joint 1.383965e-03

Joint ci ratio: 5.674839e-02	ci left: 1.345860e-03	ci right 1.424750e-03	k: 4764	n:3440000
Cons ci ratio: 1.839522e-03	ci left: 5.684587e-01	ci right 5.695057e-01	k: 1957299	n:3440000
KS ci ratio: 1.257163e-01	ci left: 2.647925e-04	ci right 3.005924e-04	k: 971	n:3440000
ZNF492   3440000 perm   5476 sec   (628 perm/sec)   p_kst 2.822674e-04   p_cons 5.689823e-01   p_joint 1.384884e-03

Joint ci ratio: 5.767088e-02	ci left: 1.298816e-03	ci right 1.376228e-03	k: 4613	n:3450000
Cons ci ratio: 1.836855e-03	ci left: 5.684593e-01	ci right 5.695047e-01	k: 1962988	n:3450000
KS ci ratio: 1.253941e-01	ci left: 2.654288e-04	ci right 3.012158e-04	k: 976	n:3450000
ZNF492   3450000 perm   5504 sec   (627 perm/sec)   p_kst 2.828986e-04   p_cons 5.689820e-01   p_joint 1.337101e-03

Joint ci ratio: 5.757735e-02	ci left: 1.299335e-03	ci right 1.376648e-03	k: 4628	n:3460000
Cons ci ratio: 1.834233e-03	ci left: 5.684508e-01	ci right 5.694947e-01	k: 1968646	n:3460000
KS ci ratio: 1.252660e-01	ci left: 2.652215e-04	ci right 3.009414e-04	k: 978	n:3460000
ZNF492   3460000 perm   5533 sec   (625 perm/sec)   p_kst 2.826590e-04   p_cons 5.689728e-01   p_joint 1.337572e-03

Joint ci ratio: 5.784081e-02	ci left: 1.283661e-03	ci right 1.360402e-03	k: 4586	n:3470000
Cons ci ratio: 1.831561e-03	ci left: 5.684589e-01	ci right 5.695013e-01	k: 1974361	n:3470000
KS ci ratio: 1.251383e-01	ci left: 2.650155e-04	ci right 3.006686e-04	k: 980	n:3470000
ZNF492   3470000 perm   5562 sec   (624 perm/sec)   p_kst 2.824207e-04   p_cons 5.689801e-01   p_joint 1.321614e-03

Joint ci ratio: 5.798668e-02	ci left: 1.273459e-03	ci right 1.349788e-03	k: 4563	n:3480000
Cons ci ratio: 1.828871e-03	ci left: 5.684746e-01	ci right 5.695155e-01	k: 1980103	n:3480000
KS ci ratio: 1.251383e-01	ci left: 2.642540e-04	ci right 2.998046e-04	k: 980	n:3480000
ZNF492   3480000 perm   5591 sec   (622 perm/sec)   p_kst 2.816092e-04   p_cons 5.689951e-01   p_joint 1.311207e-03

Joint ci ratio: 5.791060e-02	ci left: 1.273199e-03	ci right 1.349409e-03	k: 4575	n:3490000
Cons ci ratio: 1.826282e-03	ci left: 5.684665e-01	ci right 5.695059e-01	k: 1985762	n:3490000
KS ci ratio: 1.250110e-01	ci left: 2.640519e-04	ci right 2.995365e-04	k: 982	n:3490000
ZNF492   3490000 perm   5620 sec   (621 perm/sec)   p_kst 2.813754e-04   p_cons 5.689862e-01   p_joint 1.310888e-03

Joint ci ratio: 5.782852e-02	ci left: 1.273222e-03	ci right 1.349322e-03	k: 4588	n:3500000
Cons ci ratio: 1.823703e-03	ci left: 5.684587e-01	ci right 5.694966e-01	k: 1991422	n:3500000
KS ci ratio: 1.248840e-01	ci left: 2.638511e-04	ci right 2.992700e-04	k: 984	n:3500000
ZNF492   3500000 perm   5649 sec   (620 perm/sec)   p_kst 2.811429e-04   p_cons 5.689777e-01   p_joint 1.310857e-03

Joint ci ratio: 5.774050e-02	ci left: 1.273525e-03	ci right 1.349524e-03	k: 4602	n:3510000
Cons ci ratio: 1.821094e-03	ci left: 5.684621e-01	ci right 5.694985e-01	k: 1997121	n:3510000
KS ci ratio: 1.246942e-01	ci left: 2.639274e-04	ci right 2.992987e-04	k: 987	n:3510000
ZNF492   3510000 perm   5678 sec   (618 perm/sec)   p_kst 2.811966e-04   p_cons 5.689803e-01   p_joint 1.311111e-03

Joint ci ratio: 5.959738e-02	ci left: 1.190967e-03	ci right 1.264403e-03	k: 4320	n:3520000
Cons ci ratio: 1.818484e-03	ci left: 5.684685e-01	ci right 5.695035e-01	k: 2002831	n:3520000
KS ci ratio: 1.243173e-01	ci left: 2.648291e-04	ci right 3.002061e-04	k: 993	n:3520000
ZNF492   3520000 perm   5708 sec   (617 perm/sec)   p_kst 2.821023e-04   p_cons 5.689861e-01   p_joint 1.227273e-03

Joint ci ratio: 5.950792e-02	ci left: 1.191221e-03	ci right 1.264559e-03	k: 4333	n:3530000
Cons ci ratio: 1.815921e-03	ci left: 5.684654e-01	ci right 5.694988e-01	k: 2008507	n:3530000
KS ci ratio: 1.240679e-01	ci left: 2.651768e-04	ci right 3.005239e-04	k: 997	n:3530000
ZNF492   3530000 perm   5736 sec   (615 perm/sec)   p_kst 2.824363e-04   p_cons 5.689822e-01   p_joint 1.227479e-03

Joint ci ratio: 5.941887e-02	ci left: 1.191474e-03	ci right 1.264713e-03	k: 4346	n:3540000
Cons ci ratio: 1.813357e-03	ci left: 5.684653e-01	ci right 5.694973e-01	k: 2014194	n:3540000
KS ci ratio: 1.237582e-01	ci left: 2.657963e-04	ci right 3.011312e-04	k: 1002	n:3540000
ZNF492   3540000 perm   5765 sec   (614 perm/sec)   p_kst 2.830508e-04   p_cons 5.689814e-01   p_joint 1.227684e-03

Joint ci ratio: 5.933021e-02	ci left: 1.191725e-03	ci right 1.264867e-03	k: 4359	n:3550000
Cons ci ratio: 1.810763e-03	ci left: 5.684762e-01	ci right 5.695068e-01	k: 2019920	n:3550000
KS ci ratio: 1.235121e-01	ci left: 2.661395e-04	ci right 3.014445e-04	k: 1006	n:3550000
ZNF492   3550000 perm   5795 sec   (613 perm/sec)   p_kst 2.833803e-04   p_cons 5.689915e-01   p_joint 1.227887e-03

Joint ci ratio: 5.925552e-02	ci left: 1.191421e-03	ci right 1.264450e-03	k: 4370	n:3560000
Cons ci ratio: 1.808230e-03	ci left: 5.684739e-01	ci right 5.695030e-01	k: 2025599	n:3560000
KS ci ratio: 1.234509e-01	ci left: 2.656642e-04	ci right 3.008873e-04	k: 1007	n:3560000
ZNF492   3560000 perm   5824 sec   (611 perm/sec)   p_kst 2.828652e-04   p_cons 5.689885e-01   p_joint 1.227528e-03

Joint ci ratio: 5.514489e-02	ci left: 1.374463e-03	ci right 1.452680e-03	k: 5045	n:3570000
Cons ci ratio: 1.805675e-03	ci left: 5.684802e-01	ci right 5.695079e-01	k: 2031309	n:3570000
KS ci ratio: 1.232067e-01	ci left: 2.660059e-04	ci right 3.011995e-04	k: 1011	n:3570000
ZNF492   3570000 perm   5853 sec   (610 perm/sec)   p_kst 2.831933e-04   p_cons 5.689941e-01   p_joint 1.413165e-03

Joint ci ratio: 5.505765e-02	ci left: 1.375031e-03	ci right 1.453153e-03	k: 5061	n:3580000
Cons ci ratio: 1.803221e-03	ci left: 5.684620e-01	ci right 5.694882e-01	k: 2036931	n:3580000
KS ci ratio: 1.230244e-01	ci left: 2.660750e-04	ci right 3.012220e-04	k: 1014	n:3580000
ZNF492   3580000 perm   5882 sec   (609 perm/sec)   p_kst 2.832402e-04   p_cons 5.689751e-01   p_joint 1.413687e-03

Joint ci ratio: 5.497083e-02	ci left: 1.375596e-03	ci right 1.453624e-03	k: 5077	n:3590000
Cons ci ratio: 1.800738e-03	ci left: 5.684544e-01	ci right 5.694792e-01	k: 2042591	n:3590000
KS ci ratio: 1.228430e-01	ci left: 2.661439e-04	ci right 3.012442e-04	k: 1017	n:3590000
ZNF492   3590000 perm   5912 sec   (607 perm/sec)   p_kst 2.832869e-04   p_cons 5.689669e-01   p_joint 1.414206e-03

Joint ci ratio: 5.492222e-02	ci left: 1.374241e-03	ci right 1.452120e-03	k: 5086	n:3600000
Cons ci ratio: 1.798354e-03	ci left: 5.684227e-01	ci right 5.694461e-01	k: 2048164	n:3600000
KS ci ratio: 1.226624e-01	ci left: 2.662123e-04	ci right 3.012664e-04	k: 1020	n:3600000
ZNF492   3600000 perm   5942 sec   (606 perm/sec)   p_kst 2.833333e-04   p_cons 5.689344e-01   p_joint 1.412778e-03

Joint ci ratio: 5.482528e-02	ci left: 1.375352e-03	ci right 1.453152e-03	k: 5104	n:3610000
Cons ci ratio: 1.795819e-03	ci left: 5.684349e-01	ci right 5.694569e-01	k: 2053895	n:3610000
KS ci ratio: 1.225425e-01	ci left: 2.660119e-04	ci right 3.010028e-04	k: 1022	n:3610000
ZNF492   3610000 perm   5972 sec   (605 perm/sec)   p_kst 2.831025e-04   p_cons 5.689460e-01   p_joint 1.413850e-03

Joint ci ratio: 5.479852e-02	ci left: 1.372915e-03	ci right 1.450538e-03	k: 5109	n:3620000
Cons ci ratio: 1.793348e-03	ci left: 5.684328e-01	ci right 5.694533e-01	k: 2059574	n:3620000
KS ci ratio: 1.225425e-01	ci left: 2.652771e-04	ci right 3.001713e-04	k: 1022	n:3620000
ZNF492   3620000 perm   6002 sec   (603 perm/sec)   p_kst 2.823204e-04   p_cons 5.689431e-01   p_joint 1.411326e-03

Joint ci ratio: 5.472361e-02	ci left: 1.372937e-03	ci right 1.450452e-03	k: 5123	n:3630000
Cons ci ratio: 1.790944e-03	ci left: 5.684149e-01	ci right 5.694340e-01	k: 2065196	n:3630000
KS ci ratio: 1.223036e-01	ci left: 2.656145e-04	ci right 3.004801e-04	k: 1026	n:3630000
ZNF492   3630000 perm   6032 sec   (602 perm/sec)   p_kst 2.826446e-04   p_cons 5.689245e-01   p_joint 1.411295e-03

Joint ci ratio: 5.466499e-02	ci left: 1.372145e-03	ci right 1.449530e-03	k: 5134	n:3640000
Cons ci ratio: 1.788407e-03	ci left: 5.684361e-01	ci right 5.694539e-01	k: 2070960	n:3640000
KS ci ratio: 1.223037e-01	ci left: 2.648847e-04	ci right 2.996546e-04	k: 1026	n:3640000
ZNF492   3640000 perm   6062 sec   (600 perm/sec)   p_kst 2.818681e-04   p_cons 5.689451e-01   p_joint 1.410440e-03

Joint ci ratio: 5.459062e-02	ci left: 1.372169e-03	ci right 1.449447e-03	k: 5148	n:3650000
Cons ci ratio: 1.786002e-03	ci left: 5.684241e-01	ci right 5.694405e-01	k: 2076603	n:3650000
KS ci ratio: 1.221848e-01	ci left: 2.646902e-04	ci right 2.993983e-04	k: 1028	n:3650000
ZNF492   3650000 perm   6092 sec   (599 perm/sec)   p_kst 2.816438e-04   p_cons 5.689323e-01   p_joint 1.410411e-03

Joint ci ratio: 5.450598e-02	ci left: 1.372732e-03	ci right 1.449918e-03	k: 5164	n:3660000
Cons ci ratio: 1.783543e-03	ci left: 5.684296e-01	ci right 5.694446e-01	k: 2082310	n:3660000
KS ci ratio: 1.220070e-01	ci left: 2.647617e-04	ci right 2.994250e-04	k: 1031	n:3660000
ZNF492   3660000 perm   6122 sec   (598 perm/sec)   p_kst 2.816940e-04   p_cons 5.689372e-01   p_joint 1.410929e-03

Joint ci ratio: 5.445333e-02	ci left: 1.371679e-03	ci right 1.448729e-03	k: 5174	n:3670000
Cons ci ratio: 1.781089e-03	ci left: 5.684365e-01	ci right 5.694501e-01	k: 2088022	n:3670000
KS ci ratio: 1.218301e-01	ci left: 2.648327e-04	ci right 2.994515e-04	k: 1034	n:3670000
ZNF492   3670000 perm   6151 sec   (597 perm/sec)   p_kst 2.817439e-04   p_cons 5.689433e-01   p_joint 1.409809e-03

Joint ci ratio: 5.437457e-02	ci left: 1.371973e-03	ci right 1.448924e-03	k: 5189	n:3680000
Cons ci ratio: 1.778707e-03	ci left: 5.684262e-01	ci right 5.694384e-01	k: 2093671	n:3680000
KS ci ratio: 1.218301e-01	ci left: 2.641131e-04	ci right 2.986377e-04	k: 1034	n:3680000
ZNF492   3680000 perm   6181 sec   (595 perm/sec)   p_kst 2.809783e-04   p_cons 5.689323e-01   p_joint 1.410054e-03

Joint ci ratio: 5.428050e-02	ci left: 1.373066e-03	ci right 1.449942e-03	k: 5207	n:3690000
Cons ci ratio: 1.776317e-03	ci left: 5.684208e-01	ci right 5.694317e-01	k: 2099338	n:3690000
KS ci ratio: 1.215954e-01	ci left: 2.644483e-04	ci right 2.989454e-04	k: 1038	n:3690000
ZNF492   3690000 perm   6211 sec   (594 perm/sec)   p_kst 2.813008e-04   p_cons 5.689263e-01   p_joint 1.411111e-03

Joint ci ratio: 5.606036e-02	ci left: 1.282727e-03	ci right 1.356976e-03	k: 4882	n:3700000
Cons ci ratio: 1.773926e-03	ci left: 5.684184e-01	ci right 5.694279e-01	k: 2105016	n:3700000
KS ci ratio: 1.215954e-01	ci left: 2.637336e-04	ci right 2.981375e-04	k: 1038	n:3700000
ZNF492   3700000 perm   6240 sec   (593 perm/sec)   p_kst 2.805405e-04   p_cons 5.689232e-01   p_joint 1.319459e-03

Joint ci ratio: 5.618156e-02	ci left: 1.273689e-03	ci right 1.347578e-03	k: 4861	n:3710000
Cons ci ratio: 1.771528e-03	ci left: 5.684207e-01	ci right 5.694288e-01	k: 2110711	n:3710000
KS ci ratio: 1.213039e-01	ci left: 2.643295e-04	ci right 2.987225e-04	k: 1043	n:3710000
ZNF492   3710000 perm   6271 sec   (592 perm/sec)   p_kst 2.811321e-04   p_cons 5.689248e-01   p_joint 1.310243e-03

Joint ci ratio: 5.654970e-02	ci left: 1.253568e-03	ci right 1.326782e-03	k: 4798	n:3720000
Cons ci ratio: 1.769156e-03	ci left: 5.684183e-01	ci right 5.694251e-01	k: 2116389	n:3720000
KS ci ratio: 1.208417e-01	ci left: 2.657044e-04	ci right 3.001351e-04	k: 1051	n:3720000
ZNF492   3720000 perm   6301 sec   (590 perm/sec)   p_kst 2.825269e-04   p_cons 5.689218e-01   p_joint 1.289785e-03

Joint ci ratio: 5.649678e-02	ci left: 1.252586e-03	ci right 1.325672e-03	k: 4807	n:3730000
Cons ci ratio: 1.766836e-03	ci left: 5.684045e-01	ci right 5.694099e-01	k: 2122024	n:3730000
KS ci ratio: 1.207270e-01	ci left: 2.655120e-04	ci right 2.998828e-04	k: 1053	n:3730000
ZNF492   3730000 perm   6331 sec   (589 perm/sec)   p_kst 2.823056e-04   p_cons 5.689072e-01   p_joint 1.288740e-03

Joint ci ratio: 5.666826e-02	ci left: 1.241592e-03	ci right 1.314264e-03	k: 4778	n:3740000
Cons ci ratio: 1.764534e-03	ci left: 5.683880e-01	ci right 5.693921e-01	k: 2127649	n:3740000
KS ci ratio: 1.204416e-01	ci left: 2.660987e-04	ci right 3.004582e-04	k: 1058	n:3740000
ZNF492   3740000 perm   6361 sec   (588 perm/sec)   p_kst 2.828877e-04   p_cons 5.688901e-01   p_joint 1.277540e-03

Joint ci ratio: 5.659134e-02	ci left: 1.241699e-03	ci right 1.314275e-03	k: 4791	n:3750000
Cons ci ratio: 1.762085e-03	ci left: 5.684148e-01	ci right 5.694176e-01	k: 2133436	n:3750000
KS ci ratio: 1.202714e-01	ci left: 2.661650e-04	ci right 3.004810e-04	k: 1061	n:3750000
ZNF492   3750000 perm   6392 sec   (587 perm/sec)   p_kst 2.829333e-04   p_cons 5.689163e-01   p_joint 1.277600e-03

Joint ci ratio: 5.651473e-02	ci left: 1.241805e-03	ci right 1.314286e-03	k: 4804	n:3760000
Cons ci ratio: 1.759762e-03	ci left: 5.684096e-01	ci right 5.694110e-01	k: 2139103	n:3760000
KS ci ratio: 1.199892e-01	ci left: 2.667469e-04	ci right 3.010516e-04	k: 1066	n:3760000
ZNF492   3760000 perm   6423 sec   (585 perm/sec)   p_kst 2.835106e-04   p_cons 5.689104e-01   p_joint 1.277660e-03

Joint ci ratio: 5.726554e-02	ci left: 1.205825e-03	ci right 1.277172e-03	k: 4679	n:3770000
Cons ci ratio: 1.757464e-03	ci left: 5.683996e-01	ci right 5.693997e-01	k: 2144752	n:3770000
KS ci ratio: 1.198769e-01	ci left: 2.665540e-04	ci right 3.007995e-04	k: 1068	n:3770000
ZNF492   3770000 perm   6454 sec   (584 perm/sec)   p_kst 2.832891e-04   p_cons 5.688997e-01   p_joint 1.241114e-03

Joint ci ratio: 5.722280e-02	ci left: 1.204461e-03	ci right 1.275672e-03	k: 4686	n:3780000
Cons ci ratio: 1.755162e-03	ci left: 5.683937e-01	ci right 5.693924e-01	k: 2150416	n:3780000
KS ci ratio: 1.197091e-01	ci left: 2.666187e-04	ci right 3.008211e-04	k: 1071	n:3780000
ZNF492   3780000 perm   6485 sec   (583 perm/sec)   p_kst 2.833333e-04   p_cons 5.688931e-01   p_joint 1.239683e-03

Joint ci ratio: 5.716187e-02	ci left: 1.203883e-03	ci right 1.274982e-03	k: 4696	n:3790000
Cons ci ratio: 1.752796e-03	ci left: 5.684081e-01	ci right 5.694055e-01	k: 2156157	n:3790000
KS ci ratio: 1.196533e-01	ci left: 2.661711e-04	ci right 3.002992e-04	k: 1072	n:3790000
ZNF492   3790000 perm   6516 sec   (582 perm/sec)   p_kst 2.828496e-04   p_cons 5.689069e-01   p_joint 1.239050e-03

Joint ci ratio: 5.711937e-02	ci left: 1.202531e-03	ci right 1.273496e-03	k: 4703	n:3800000
Cons ci ratio: 1.750479e-03	ci left: 5.684114e-01	ci right 5.694075e-01	k: 2161856	n:3800000
KS ci ratio: 1.196533e-01	ci left: 2.654707e-04	ci right 2.995089e-04	k: 1072	n:3800000
ZNF492   3800000 perm   6547 sec   (580 perm/sec)   p_kst 2.821053e-04   p_cons 5.689095e-01   p_joint 1.237632e-03

Joint ci ratio: 5.819459e-02	ci left: 1.154880e-03	ci right 1.224359e-03	k: 4531	n:3810000
Cons ci ratio: 1.748276e-03	ci left: 5.683850e-01	ci right 5.693798e-01	k: 2167442	n:3810000
KS ci ratio: 1.195977e-01	ci left: 2.650285e-04	ci right 2.989931e-04	k: 1073	n:3810000
ZNF492   3810000 perm   6578 sec   (579 perm/sec)   p_kst 2.816273e-04   p_cons 5.688824e-01   p_joint 1.189239e-03

Joint ci ratio: 5.814332e-02	ci left: 1.153921e-03	ci right 1.223279e-03	k: 4539	n:3820000
Cons ci ratio: 1.745898e-03	ci left: 5.684105e-01	ci right 5.694040e-01	k: 2173226	n:3820000
KS ci ratio: 1.195420e-01	ci left: 2.645887e-04	ci right 2.984800e-04	k: 1074	n:3820000
ZNF492   3820000 perm   6610 sec   (578 perm/sec)   p_kst 2.811518e-04   p_cons 5.689073e-01   p_joint 1.188220e-03

Joint ci ratio: 5.809859e-02	ci left: 1.152709e-03	ci right 1.221939e-03	k: 4546	n:3830000
Cons ci ratio: 1.743684e-03	ci left: 5.683924e-01	ci right 5.693846e-01	k: 2178843	n:3830000
KS ci ratio: 1.194865e-01	ci left: 2.641511e-04	ci right 2.979696e-04	k: 1075	n:3830000
ZNF492   3830000 perm   6641 sec   (577 perm/sec)   p_kst 2.806789e-04   p_cons 5.688885e-01   p_joint 1.186945e-03

Joint ci ratio: 5.813069e-02	ci left: 1.148424e-03	ci right 1.217436e-03	k: 4541	n:3840000
Cons ci ratio: 1.741493e-03	ci left: 5.683701e-01	ci right 5.693610e-01	k: 2184444	n:3840000
KS ci ratio: 1.194310e-01	ci left: 2.637159e-04	ci right 2.974618e-04	k: 1076	n:3840000
ZNF492   3840000 perm   6673 sec   (575 perm/sec)   p_kst 2.802083e-04   p_cons 5.688656e-01   p_joint 1.182552e-03

Joint ci ratio: 5.806681e-02	ci left: 1.148001e-03	ci right 1.216909e-03	k: 4551	n:3850000
Cons ci ratio: 1.739237e-03	ci left: 5.683688e-01	ci right 5.693584e-01	k: 2190125	n:3850000
KS ci ratio: 1.192099e-01	ci left: 2.640389e-04	ci right 2.977592e-04	k: 1080	n:3850000
ZNF492   3850000 perm   6704 sec   (574 perm/sec)   p_kst 2.805195e-04   p_cons 5.688636e-01   p_joint 1.182078e-03

Joint ci ratio: 5.798407e-02	ci left: 1.148346e-03	ci right 1.217173e-03	k: 4564	n:3860000
Cons ci ratio: 1.736988e-03	ci left: 5.683680e-01	ci right 5.693563e-01	k: 2195808	n:3860000
KS ci ratio: 1.190448e-01	ci left: 2.641089e-04	ci right 2.977881e-04	k: 1083	n:3860000
ZNF492   3860000 perm   6736 sec   (573 perm/sec)   p_kst 2.805699e-04   p_cons 5.688622e-01   p_joint 1.182383e-03

Joint ci ratio: 5.336166e-02	ci left: 1.355343e-03	ci right 1.429902e-03	k: 5388	n:3870000
Cons ci ratio: 1.734717e-03	ci left: 5.683757e-01	ci right 5.693627e-01	k: 2201524	n:3870000
KS ci ratio: 1.187166e-01	ci left: 2.649307e-04	ci right 2.986151e-04	k: 1089	n:3870000
ZNF492   3870000 perm   6768 sec   (572 perm/sec)   p_kst 2.813953e-04   p_cons 5.688693e-01   p_joint 1.392248e-03

Joint ci ratio: 5.341638e-02	ci left: 1.349053e-03	ci right 1.423344e-03	k: 5377	n:3880000
Cons ci ratio: 1.732487e-03	ci left: 5.683746e-01	ci right 5.693604e-01	k: 2207206	n:3880000
KS ci ratio: 1.183372e-01	ci left: 2.659985e-04	ci right 2.997030e-04	k: 1096	n:3880000
ZNF492   3880000 perm   6800 sec   (571 perm/sec)   p_kst 2.824742e-04   p_cons 5.688675e-01   p_joint 1.385825e-03

Joint ci ratio: 5.261907e-02	ci left: 1.387186e-03	ci right 1.462402e-03	k: 5541	n:3890000
Cons ci ratio: 1.730236e-03	ci left: 5.683815e-01	ci right 5.693660e-01	k: 2212919	n:3890000
KS ci ratio: 1.181757e-01	ci left: 2.660631e-04	ci right 2.997266e-04	k: 1099	n:3890000
ZNF492   3890000 perm   6833 sec   (569 perm/sec)   p_kst 2.825193e-04   p_cons 5.688738e-01   p_joint 1.424422e-03

Joint ci ratio: 5.255747e-02	ci left: 1.386919e-03	ci right 1.462030e-03	k: 5554	n:3900000
Cons ci ratio: 1.727995e-03	ci left: 5.683883e-01	ci right 5.693716e-01	k: 2218632	n:3900000
KS ci ratio: 1.180149e-01	ci left: 2.661274e-04	ci right 2.997500e-04	k: 1102	n:3900000
ZNF492   3900000 perm   6865 sec   (568 perm/sec)   p_kst 2.825641e-04   p_cons 5.688800e-01   p_joint 1.424103e-03

Joint ci ratio: 5.250081e-02	ci left: 1.386400e-03	ci right 1.461400e-03	k: 5566	n:3910000
Cons ci ratio: 1.725781e-03	ci left: 5.683895e-01	ci right 5.693715e-01	k: 2224323	n:3910000
KS ci ratio: 1.179081e-01	ci left: 2.659432e-04	ci right 2.995100e-04	k: 1104	n:3910000
ZNF492   3910000 perm   6897 sec   (567 perm/sec)   p_kst 2.823529e-04   p_cons 5.688806e-01   p_joint 1.423529e-03

Joint ci ratio: 5.242552e-02	ci left: 1.386892e-03	ci right 1.461807e-03	k: 5582	n:3920000
Cons ci ratio: 1.723529e-03	ci left: 5.684042e-01	ci right 5.693850e-01	k: 2230067	n:3920000
KS ci ratio: 1.176952e-01	ci left: 2.662551e-04	ci right 2.997964e-04	k: 1108	n:3920000
ZNF492   3920000 perm   6929 sec   (566 perm/sec)   p_kst 2.826531e-04   p_cons 5.688946e-01   p_joint 1.423980e-03

Joint ci ratio: 5.235523e-02	ci left: 1.387129e-03	ci right 1.461954e-03	k: 5597	n:3930000
Cons ci ratio: 1.721341e-03	ci left: 5.684031e-01	ci right 5.693826e-01	k: 2235749	n:3930000
KS ci ratio: 1.175892e-01	ci left: 2.660716e-04	ci right 2.995574e-04	k: 1110	n:3930000
ZNF492   3930000 perm   6961 sec   (565 perm/sec)   p_kst 2.824427e-04   p_cons 5.688929e-01   p_joint 1.424173e-03

Joint ci ratio: 5.229455e-02	ci left: 1.386865e-03	ci right 1.461586e-03	k: 5610	n:3940000
Cons ci ratio: 1.719205e-03	ci left: 5.683895e-01	ci right 5.693678e-01	k: 2241382	n:3940000
KS ci ratio: 1.174308e-01	ci left: 2.661353e-04	ci right 2.995809e-04	k: 1113	n:3940000
ZNF492   3940000 perm   6994 sec   (563 perm/sec)   p_kst 2.824873e-04   p_cons 5.688787e-01   p_joint 1.423858e-03

Joint ci ratio: 5.245874e-02	ci left: 1.374609e-03	ci right 1.448910e-03	k: 5575	n:3950000
Cons ci ratio: 1.717028e-03	ci left: 5.683899e-01	ci right 5.693669e-01	k: 2247070	n:3950000
KS ci ratio: 1.173782e-01	ci left: 2.657073e-04	ci right 2.990831e-04	k: 1114	n:3950000
ZNF492   3950000 perm   7026 sec   (562 perm/sec)   p_kst 2.820253e-04   p_cons 5.688785e-01   p_joint 1.411392e-03

Joint ci ratio: 5.236956e-02	ci left: 1.375873e-03	ci right 1.450112e-03	k: 5594	n:3960000
Cons ci ratio: 1.714772e-03	ci left: 5.684153e-01	ci right 5.693911e-01	k: 2252857	n:3960000
KS ci ratio: 1.172730e-01	ci left: 2.655265e-04	ci right 2.988477e-04	k: 1116	n:3960000
ZNF492   3960000 perm   7059 sec   (561 perm/sec)   p_kst 2.818182e-04   p_cons 5.689033e-01   p_joint 1.412626e-03

Joint ci ratio: 5.230884e-02	ci left: 1.375639e-03	ci right 1.449776e-03	k: 5607	n:3970000
Cons ci ratio: 1.712628e-03	ci left: 5.684112e-01	ci right 5.693857e-01	k: 2258527	n:3970000
KS ci ratio: 1.171159e-01	ci left: 2.655912e-04	ci right 2.988727e-04	k: 1119	n:3970000
ZNF492   3970000 perm   7092 sec   (560 perm/sec)   p_kst 2.818640e-04   p_cons 5.688985e-01   p_joint 1.412343e-03

Joint ci ratio: 5.222042e-02	ci left: 1.376894e-03	ci right 1.450970e-03	k: 5626	n:3980000
Cons ci ratio: 1.710546e-03	ci left: 5.683914e-01	ci right 5.693648e-01	k: 2264135	n:3980000
KS ci ratio: 1.168553e-01	ci left: 2.661434e-04	ci right 2.994148e-04	k: 1124	n:3980000
ZNF492   3980000 perm   7124 sec   (559 perm/sec)   p_kst 2.824121e-04   p_cons 5.688781e-01   p_joint 1.413568e-03

Joint ci ratio: 5.216947e-02	ci left: 1.376164e-03	ci right 1.450126e-03	k: 5637	n:3990000
Cons ci ratio: 1.708408e-03	ci left: 5.683901e-01	ci right 5.693622e-01	k: 2269816	n:3990000
KS ci ratio: 1.166998e-01	ci left: 2.662063e-04	ci right 2.994382e-04	k: 1127	n:3990000
ZNF492   3990000 perm   7157 sec   (557 perm/sec)   p_kst 2.824561e-04   p_cons 5.688762e-01   p_joint 1.412782e-03

Joint ci ratio: 5.210020e-02	ci left: 1.376425e-03	ci right 1.450300e-03	k: 5652	n:4000000
Cons ci ratio: 1.706264e-03	ci left: 5.683928e-01	ci right 5.693636e-01	k: 2275513	n:4000000
KS ci ratio: 1.166481e-01	ci left: 2.657835e-04	ci right 2.989469e-04	k: 1128	n:4000000
ZNF492   4000000 perm   7190 sec   (556 perm/sec)   p_kst 2.820000e-04   p_cons 5.688783e-01   p_joint 1.413000e-03

Joint ci ratio: 5.199907e-02	ci left: 1.378407e-03	ci right 1.452241e-03	k: 5674	n:4010000
Cons ci ratio: 1.704143e-03	ci left: 5.683912e-01	ci right 5.693608e-01	k: 2281193	n:4010000
KS ci ratio: 1.165449e-01	ci left: 2.656049e-04	ci right 2.987147e-04	k: 1130	n:4010000
ZNF492   4010000 perm   7224 sec   (555 perm/sec)   p_kst 2.817955e-04   p_cons 5.688761e-01   p_joint 1.414963e-03

Joint ci ratio: 5.196707e-02	ci left: 1.376697e-03	ci right 1.450392e-03	k: 5681	n:4020000
Cons ci ratio: 1.702061e-03	ci left: 5.683806e-01	ci right 5.693491e-01	k: 2286837	n:4020000
KS ci ratio: 1.163907e-01	ci left: 2.656687e-04	ci right 2.987397e-04	k: 1133	n:4020000
ZNF492   4020000 perm   7257 sec   (554 perm/sec)   p_kst 2.818408e-04   p_cons 5.688649e-01   p_joint 1.413184e-03

Joint ci ratio: 5.282599e-02	ci left: 1.328466e-03	ci right 1.400790e-03	k: 5498	n:4030000
Cons ci ratio: 1.699947e-03	ci left: 5.683813e-01	ci right 5.693486e-01	k: 2292526	n:4030000
KS ci ratio: 1.162370e-01	ci left: 2.657322e-04	ci right 2.987644e-04	k: 1136	n:4030000
ZNF492   4030000 perm   7290 sec   (553 perm/sec)   p_kst 2.818859e-04   p_cons 5.688650e-01   p_joint 1.364268e-03

Joint ci ratio: 5.277325e-02	ci left: 1.327864e-03	ci right 1.400081e-03	k: 5509	n:4040000
Cons ci ratio: 1.697865e-03	ci left: 5.683753e-01	ci right 5.693414e-01	k: 2298188	n:4040000
KS ci ratio: 1.160840e-01	ci left: 2.657955e-04	ci right 2.987891e-04	k: 1139	n:4040000
ZNF492   4040000 perm   7324 sec   (552 perm/sec)   p_kst 2.819307e-04   p_cons 5.688584e-01   p_joint 1.363614e-03

Joint ci ratio: 5.268723e-02	ci left: 1.328971e-03	ci right 1.401127e-03	k: 5527	n:4050000
Cons ci ratio: 1.695790e-03	ci left: 5.683694e-01	ci right 5.693342e-01	k: 2303850	n:4050000
KS ci ratio: 1.159315e-01	ci left: 2.658584e-04	ci right 2.988135e-04	k: 1142	n:4050000
ZNF492   4050000 perm   7357 sec   (550 perm/sec)   p_kst 2.819753e-04   p_cons 5.688519e-01   p_joint 1.364691e-03

Joint ci ratio: 5.263967e-02	ci left: 1.328129e-03	ci right 1.400172e-03	k: 5537	n:4060000
Cons ci ratio: 1.693653e-03	ci left: 5.683836e-01	ci right 5.693473e-01	k: 2309594	n:4060000
KS ci ratio: 1.158809e-01	ci left: 2.654428e-04	ci right 2.983310e-04	k: 1143	n:4060000
ZNF492   4060000 perm   7390 sec   (549 perm/sec)   p_kst 2.815271e-04   p_cons 5.688655e-01   p_joint 1.363793e-03

Joint ci ratio: 5.288898e-02	ci left: 1.312257e-03	ci right 1.383787e-03	k: 5485	n:4070000
Cons ci ratio: 1.691607e-03	ci left: 5.683740e-01	ci right 5.693365e-01	k: 2315241	n:4070000
KS ci ratio: 1.158303e-01	ci left: 2.650292e-04	ci right 2.978508e-04	k: 1144	n:4070000
ZNF492   4070000 perm   7424 sec   (548 perm/sec)   p_kst 2.810811e-04   p_cons 5.688553e-01   p_joint 1.347666e-03

Joint ci ratio: 5.457877e-02	ci left: 1.228276e-03	ci right 1.297435e-03	k: 5151	n:4080000
Cons ci ratio: 1.689577e-03	ci left: 5.683617e-01	ci right 5.693230e-01	k: 2320877	n:4080000
KS ci ratio: 1.157798e-01	ci left: 2.646176e-04	ci right 2.973730e-04	k: 1145	n:4080000
ZNF492   4080000 perm   7458 sec   (547 perm/sec)   p_kst 2.806373e-04   p_cons 5.688424e-01   p_joint 1.262500e-03

Joint ci ratio: 5.451003e-02	ci left: 1.228408e-03	ci right 1.297484e-03	k: 5164	n:4090000
Cons ci ratio: 1.687441e-03	ci left: 5.683822e-01	ci right 5.693424e-01	k: 2326647	n:4090000
KS ci ratio: 1.156285e-01	ci left: 2.646829e-04	ci right 2.974006e-04	k: 1148	n:4090000
ZNF492   4090000 perm   7492 sec   (546 perm/sec)   p_kst 2.806846e-04   p_cons 5.688623e-01   p_joint 1.262592e-03

Joint ci ratio: 5.445736e-02	ci left: 1.227818e-03	ci right 1.296792e-03	k: 5174	n:4100000
Cons ci ratio: 1.685458e-03	ci left: 5.683607e-01	ci right 5.693197e-01	k: 2332245	n:4100000
KS ci ratio: 1.155280e-01	ci left: 2.645110e-04	ci right 2.971772e-04	k: 1150	n:4100000
ZNF492   4100000 perm   7525 sec   (545 perm/sec)   p_kst 2.804878e-04   p_cons 5.688402e-01   p_joint 1.261951e-03

Joint ci ratio: 5.435238e-02	ci left: 1.229631e-03	ci right 1.298569e-03	k: 5194	n:4110000
Cons ci ratio: 1.683429e-03	ci left: 5.683546e-01	ci right 5.693124e-01	k: 2337906	n:4110000
KS ci ratio: 1.152779e-01	ci left: 2.650489e-04	ci right 2.977057e-04	k: 1155	n:4110000
ZNF492   4110000 perm   7559 sec   (544 perm/sec)   p_kst 2.810219e-04   p_cons 5.688336e-01   p_joint 1.263747e-03

Joint ci ratio: 5.430539e-02	ci left: 1.228801e-03	ci right 1.297631e-03	k: 5203	n:4120000
Cons ci ratio: 1.681475e-03	ci left: 5.683289e-01	ci right 5.692856e-01	k: 2343486	n:4120000
KS ci ratio: 1.151783e-01	ci left: 2.648770e-04	ci right 2.974826e-04	k: 1157	n:4120000
ZNF492   4120000 perm   7593 sec   (543 perm/sec)   p_kst 2.808252e-04   p_cons 5.688073e-01   p_joint 1.262864e-03

Joint ci ratio: 5.425851e-02	ci left: 1.227975e-03	ci right 1.296698e-03	k: 5212	n:4130000
Cons ci ratio: 1.679407e-03	ci left: 5.683387e-01	ci right 5.692942e-01	k: 2349212	n:4130000
KS ci ratio: 1.151286e-01	ci left: 2.644708e-04	ci right 2.970114e-04	k: 1158	n:4130000
ZNF492   4130000 perm   7627 sec   (542 perm/sec)   p_kst 2.803874e-04   p_cons 5.688165e-01   p_joint 1.261985e-03

Joint ci ratio: 5.421696e-02	ci left: 1.226915e-03	ci right 1.295525e-03	k: 5220	n:4140000
Cons ci ratio: 1.677384e-03	ci left: 5.683373e-01	ci right 5.692916e-01	k: 2354892	n:4140000
KS ci ratio: 1.150294e-01	ci left: 2.643011e-04	ci right 2.967910e-04	k: 1160	n:4140000
ZNF492   4140000 perm   7661 sec   (540 perm/sec)   p_kst 2.801932e-04   p_cons 5.688145e-01   p_joint 1.260870e-03

Joint ci ratio: 5.415994e-02	ci left: 1.226573e-03	ci right 1.295089e-03	k: 5231	n:4150000
Cons ci ratio: 1.675355e-03	ci left: 5.683397e-01	ci right 5.692929e-01	k: 2360588	n:4150000
KS ci ratio: 1.149800e-01	ci left: 2.638983e-04	ci right 2.963237e-04	k: 1161	n:4150000
ZNF492   4150000 perm   7694 sec   (539 perm/sec)   p_kst 2.797590e-04   p_cons 5.688164e-01   p_joint 1.260482e-03

Joint ci ratio: 5.408246e-02	ci left: 1.227182e-03	ci right 1.295631e-03	k: 5246	n:4160000
Cons ci ratio: 1.673305e-03	ci left: 5.683509e-01	ci right 5.693029e-01	k: 2366320	n:4160000
KS ci ratio: 1.147825e-01	ci left: 2.641978e-04	ci right 2.966005e-04	k: 1165	n:4160000
ZNF492   4160000 perm   7729 sec   (538 perm/sec)   p_kst 2.800481e-04   p_cons 5.688269e-01   p_joint 1.261058e-03

Joint ci ratio: 5.402587e-02	ci left: 1.226841e-03	ci right 1.295197e-03	k: 5257	n:4170000
Cons ci ratio: 1.671246e-03	ci left: 5.683665e-01	ci right 5.693174e-01	k: 2372071	n:4170000
KS ci ratio: 1.146352e-01	ci left: 2.642631e-04	ci right 2.966293e-04	k: 1168	n:4170000
ZNF492   4170000 perm   7763 sec   (537 perm/sec)   p_kst 2.800959e-04   p_cons 5.688420e-01   p_joint 1.260671e-03

Joint ci ratio: 5.396945e-02	ci left: 1.226502e-03	ci right 1.294766e-03	k: 5268	n:4180000
Cons ci ratio: 1.669196e-03	ci left: 5.683815e-01	ci right 5.693313e-01	k: 2377820	n:4180000
KS ci ratio: 1.144884e-01	ci left: 2.643280e-04	ci right 2.966579e-04	k: 1171	n:4180000
ZNF492   4180000 perm   7797 sec   (536 perm/sec)   p_kst 2.801435e-04   p_cons 5.688565e-01   p_joint 1.260287e-03

Joint ci ratio: 5.391833e-02	ci left: 1.225929e-03	ci right 1.294094e-03	k: 5278	n:4190000
Cons ci ratio: 1.667232e-03	ci left: 5.683736e-01	ci right 5.693222e-01	k: 2383473	n:4190000
KS ci ratio: 1.143908e-01	ci left: 2.641608e-04	ci right 2.964409e-04	k: 1173	n:4190000
ZNF492   4190000 perm   7831 sec   (535 perm/sec)   p_kst 2.799523e-04   p_cons 5.688480e-01   p_joint 1.259666e-03

Joint ci ratio: 5.387755e-02	ci left: 1.224890e-03	ci right 1.292944e-03	k: 5286	n:4200000
Cons ci ratio: 1.665246e-03	ci left: 5.683743e-01	ci right 5.693218e-01	k: 2389162	n:4200000
KS ci ratio: 1.142935e-01	ci left: 2.639944e-04	ci right 2.962249e-04	k: 1175	n:4200000
ZNF492   4200000 perm   7866 sec   (534 perm/sec)   p_kst 2.797619e-04   p_cons 5.688481e-01   p_joint 1.258571e-03

Joint ci ratio: 5.382160e-02	ci left: 1.224558e-03	ci right 1.292521e-03	k: 5297	n:4210000
Cons ci ratio: 1.663212e-03	ci left: 5.683909e-01	ci right 5.693373e-01	k: 2394918	n:4210000
KS ci ratio: 1.139548e-01	ci left: 2.649826e-04	ci right 2.972314e-04	k: 1182	n:4210000
ZNF492   4210000 perm   7901 sec   (533 perm/sec)   p_kst 2.807601e-04   p_cons 5.688641e-01   p_joint 1.258195e-03

Joint ci ratio: 5.372531e-02	ci left: 1.226098e-03	ci right 1.294021e-03	k: 5316	n:4220000
Cons ci ratio: 1.661243e-03	ci left: 5.683906e-01	ci right 5.693358e-01	k: 2400603	n:4220000
KS ci ratio: 1.137626e-01	ci left: 2.652756e-04	ci right 2.975019e-04	k: 1186	n:4220000
ZNF492   4220000 perm   7936 sec   (532 perm/sec)   p_kst 2.810427e-04   p_cons 5.688633e-01   p_joint 1.259716e-03

Joint ci ratio: 5.366479e-02	ci left: 1.225998e-03	ci right 1.293836e-03	k: 5328	n:4230000
Cons ci ratio: 1.659276e-03	ci left: 5.683920e-01	ci right 5.693361e-01	k: 2406295	n:4230000
KS ci ratio: 1.136669e-01	ci left: 2.651078e-04	ci right 2.972849e-04	k: 1188	n:4230000
ZNF492   4230000 perm   7971 sec   (531 perm/sec)   p_kst 2.808511e-04   p_cons 5.688641e-01   p_joint 1.259574e-03

Joint ci ratio: 5.358940e-02	ci left: 1.226597e-03	ci right 1.294370e-03	k: 5343	n:4240000
Cons ci ratio: 1.657344e-03	ci left: 5.683848e-01	ci right 5.693278e-01	k: 2411951	n:4240000
KS ci ratio: 1.134762e-01	ci left: 2.653991e-04	ci right 2.975539e-04	k: 1192	n:4240000
ZNF492   4240000 perm   8006 sec   (530 perm/sec)   p_kst 2.811321e-04   p_cons 5.688564e-01   p_joint 1.260142e-03

Joint ci ratio: 5.351934e-02	ci left: 1.226961e-03	ci right 1.294663e-03	k: 5357	n:4250000
Cons ci ratio: 1.655388e-03	ci left: 5.683869e-01	ci right 5.693288e-01	k: 2417646	n:4250000
KS ci ratio: 1.133812e-01	ci left: 2.652319e-04	ci right 2.973377e-04	k: 1194	n:4250000
ZNF492   4250000 perm   8041 sec   (529 perm/sec)   p_kst 2.809412e-04   p_cons 5.688579e-01   p_joint 1.260471e-03

Joint ci ratio: 5.348445e-02	ci left: 1.225702e-03	ci right 1.293289e-03	k: 5364	n:4260000
Cons ci ratio: 1.653457e-03	ci left: 5.683835e-01	ci right 5.693243e-01	k: 2423318	n:4260000
KS ci ratio: 1.133338e-01	ci left: 2.648374e-04	ci right 2.968811e-04	k: 1195	n:4260000
ZNF492   4260000 perm   8075 sec   (528 perm/sec)   p_kst 2.805164e-04   p_cons 5.688540e-01   p_joint 1.259155e-03

Joint ci ratio: 5.341976e-02	ci left: 1.225835e-03	ci right 1.293345e-03	k: 5377	n:4270000
Cons ci ratio: 1.651433e-03	ci left: 5.684097e-01	ci right 5.693494e-01	k: 2429116	n:4270000
KS ci ratio: 1.130505e-01	ci left: 2.655825e-04	ci right 2.976308e-04	k: 1201	n:4270000
ZNF492   4270000 perm   8110 sec   (526 perm/sec)   p_kst 2.812646e-04   p_cons 5.688796e-01   p_joint 1.259251e-03

Joint ci ratio: 5.335531e-02	ci left: 1.225968e-03	ci right 1.293401e-03	k: 5390	n:4280000
Cons ci ratio: 1.649480e-03	ci left: 5.684171e-01	ci right 5.693557e-01	k: 2434834	n:4280000
KS ci ratio: 1.129097e-01	ci left: 2.656431e-04	ci right 2.976561e-04	k: 1204	n:4280000
ZNF492   4280000 perm   8146 sec   (525 perm/sec)   p_kst 2.813084e-04   p_cons 5.688864e-01   p_joint 1.259346e-03

Joint ci ratio: 5.382223e-02	ci left: 1.201722e-03	ci right 1.268418e-03	k: 5297	n:4290000
Cons ci ratio: 1.647556e-03	ci left: 5.684177e-01	ci right 5.693552e-01	k: 2440523	n:4290000
KS ci ratio: 1.127694e-01	ci left: 2.657035e-04	ci right 2.976813e-04	k: 1207	n:4290000
ZNF492   4290000 perm   8181 sec   (524 perm/sec)   p_kst 2.813520e-04   p_cons 5.688865e-01   p_joint 1.234732e-03

Joint ci ratio: 5.372594e-02	ci left: 1.203286e-03	ci right 1.269946e-03	k: 5316	n:4300000
Cons ci ratio: 1.645718e-03	ci left: 5.683948e-01	ci right 5.693312e-01	k: 2446111	n:4300000
KS ci ratio: 1.126297e-01	ci left: 2.657636e-04	ci right 2.977064e-04	k: 1210	n:4300000
ZNF492   4300000 perm   8216 sec   (523 perm/sec)   p_kst 2.813953e-04   p_cons 5.688630e-01   p_joint 1.236279e-03

Joint ci ratio: 5.364526e-02	ci left: 1.204157e-03	ci right 1.270762e-03	k: 5332	n:4310000
Cons ci ratio: 1.643787e-03	ci left: 5.684017e-01	ci right 5.693370e-01	k: 2451827	n:4310000
KS ci ratio: 1.124441e-01	ci left: 2.660489e-04	ci right 2.979698e-04	k: 1214	n:4310000
ZNF492   4310000 perm   8252 sec   (522 perm/sec)   p_kst 2.816705e-04   p_cons 5.688694e-01   p_joint 1.237123e-03

Joint ci ratio: 5.358501e-02	ci left: 1.204110e-03	ci right 1.270635e-03	k: 5344	n:4320000
Cons ci ratio: 1.641897e-03	ci left: 5.683981e-01	ci right 5.693323e-01	k: 2457498	n:4320000
KS ci ratio: 1.123055e-01	ci left: 2.661080e-04	ci right 2.979940e-04	k: 1217	n:4320000
ZNF492   4320000 perm   8287 sec   (521 perm/sec)   p_kst 2.817130e-04   p_cons 5.688653e-01   p_joint 1.237037e-03

Joint ci ratio: 5.354999e-02	ci left: 1.202924e-03	ci right 1.269339e-03	k: 5351	n:4330000
Cons ci ratio: 1.640006e-03	ci left: 5.683967e-01	ci right 5.693298e-01	k: 2463178	n:4330000
KS ci ratio: 1.122595e-01	ci left: 2.657179e-04	ci right 2.975432e-04	k: 1218	n:4330000
ZNF492   4330000 perm   8323 sec   (520 perm/sec)   p_kst 2.812933e-04   p_cons 5.688633e-01   p_joint 1.235797e-03

Joint ci ratio: 5.420295e-02	ci left: 1.171056e-03	ci right 1.236525e-03	k: 5223	n:4340000
Cons ci ratio: 1.638103e-03	ci left: 5.684010e-01	ci right 5.693330e-01	k: 2468883	n:4340000
KS ci ratio: 1.120757e-01	ci left: 2.660014e-04	ci right 2.978052e-04	k: 1222	n:4340000
ZNF492   4340000 perm   8358 sec   (519 perm/sec)   p_kst 2.815668e-04   p_cons 5.688671e-01   p_joint 1.203456e-03

Joint ci ratio: 5.415116e-02	ci left: 1.170632e-03	ci right 1.236012e-03	k: 5233	n:4350000
Cons ci ratio: 1.636219e-03	ci left: 5.684016e-01	ci right 5.693326e-01	k: 2474572	n:4350000
KS ci ratio: 1.119385e-01	ci left: 2.660603e-04	ci right 2.978295e-04	k: 1225	n:4350000
ZNF492   4350000 perm   8394 sec   (518 perm/sec)   p_kst 2.816092e-04   p_cons 5.688671e-01   p_joint 1.202989e-03

Joint ci ratio: 5.407887e-02	ci left: 1.171115e-03	ci right 1.236432e-03	k: 5247	n:4360000
Cons ci ratio: 1.634357e-03	ci left: 5.683976e-01	ci right 5.693275e-01	k: 2480241	n:4360000
KS ci ratio: 1.118473e-01	ci left: 2.658959e-04	ci right 2.976180e-04	k: 1227	n:4360000
ZNF492   4360000 perm   8430 sec   (517 perm/sec)   p_kst 2.814220e-04   p_cons 5.688626e-01   p_joint 1.203440e-03

Joint ci ratio: 5.403257e-02	ci left: 1.170466e-03	ci right 1.235690e-03	k: 5256	n:4370000
Cons ci ratio: 1.632512e-03	ci left: 5.683902e-01	ci right 5.693191e-01	k: 2485895	n:4370000
KS ci ratio: 1.118019e-01	ci left: 2.655099e-04	ci right 2.971722e-04	k: 1228	n:4370000
ZNF492   4370000 perm   8466 sec   (516 perm/sec)   p_kst 2.810069e-04   p_cons 5.688547e-01   p_joint 1.202746e-03

Joint ci ratio: 5.398640e-02	ci left: 1.169821e-03	ci right 1.234951e-03	k: 5265	n:4380000
Cons ci ratio: 1.630674e-03	ci left: 5.683829e-01	ci right 5.693107e-01	k: 2491549	n:4380000
KS ci ratio: 1.117564e-01	ci left: 2.651256e-04	ci right 2.967284e-04	k: 1229	n:4380000
ZNF492   4380000 perm   8502 sec   (515 perm/sec)   p_kst 2.805936e-04   p_cons 5.688468e-01   p_joint 1.202055e-03

Joint ci ratio: 5.392499e-02	ci left: 1.169853e-03	ci right 1.234908e-03	k: 5277	n:4390000
Cons ci ratio: 1.628766e-03	ci left: 5.683983e-01	ci right 5.693251e-01	k: 2497303	n:4390000
KS ci ratio: 1.117110e-01	ci left: 2.647431e-04	ci right 2.962866e-04	k: 1230	n:4390000
ZNF492   4390000 perm   8538 sec   (514 perm/sec)   p_kst 2.801822e-04   p_cons 5.688617e-01   p_joint 1.202050e-03

Joint ci ratio: 5.387909e-02	ci left: 1.169212e-03	ci right 1.234175e-03	k: 5286	n:4400000
Cons ci ratio: 1.626935e-03	ci left: 5.683926e-01	ci right 5.693183e-01	k: 2502964	n:4400000
KS ci ratio: 1.116204e-01	ci left: 2.645833e-04	ci right 2.960805e-04	k: 1232	n:4400000
ZNF492   4400000 perm   8574 sec   (513 perm/sec)   p_kst 2.800000e-04   p_cons 5.688555e-01   p_joint 1.201364e-03

Joint ci ratio: 5.466640e-02	ci left: 1.132784e-03	ci right 1.196672e-03	k: 5135	n:4410000
Cons ci ratio: 1.625116e-03	ci left: 5.683848e-01	ci right 5.693094e-01	k: 2508616	n:4410000
KS ci ratio: 1.115300e-01	ci left: 2.644242e-04	ci right 2.958753e-04	k: 1234	n:4410000
ZNF492   4410000 perm   8610 sec   (512 perm/sec)   p_kst 2.798186e-04   p_cons 5.688472e-01   p_joint 1.164399e-03

Joint ci ratio: 5.461327e-02	ci left: 1.132453e-03	ci right 1.196258e-03	k: 5145	n:4420000
Cons ci ratio: 1.623372e-03	ci left: 5.683565e-01	ci right 5.692801e-01	k: 2514177	n:4420000
KS ci ratio: 1.115300e-01	ci left: 2.638259e-04	ci right 2.952059e-04	k: 1234	n:4420000
ZNF492   4420000 perm   8646 sec   (511 perm/sec)   p_kst 2.791855e-04   p_cons 5.688183e-01   p_joint 1.164027e-03

Joint ci ratio: 5.517436e-02	ci left: 1.106742e-03	ci right 1.169759e-03	k: 5041	n:4430000
Cons ci ratio: 1.621548e-03	ci left: 5.683542e-01	ci right 5.692768e-01	k: 2519853	n:4430000
KS ci ratio: 1.112601e-01	ci left: 2.645470e-04	ci right 2.959316e-04	k: 1240	n:4430000
ZNF492   4430000 perm   8682 sec   (510 perm/sec)   p_kst 2.799097e-04   p_cons 5.688156e-01   p_joint 1.137923e-03

Joint ci ratio: 5.511428e-02	ci left: 1.106693e-03	ci right 1.169636e-03	k: 5052	n:4440000
Cons ci ratio: 1.619772e-03	ci left: 5.683394e-01	ci right 5.692609e-01	k: 2525473	n:4440000
KS ci ratio: 1.109920e-01	ci left: 2.652650e-04	ci right 2.966540e-04	k: 1246	n:4440000
ZNF492   4440000 perm   8719 sec   (509 perm/sec)   p_kst 2.806306e-04   p_cons 5.688002e-01   p_joint 1.137838e-03

Joint ci ratio: 5.526786e-02	ci left: 1.098000e-03	ci right 1.160629e-03	k: 5024	n:4450000
Cons ci ratio: 1.617926e-03	ci left: 5.683476e-01	ci right 5.692681e-01	k: 2531195	n:4450000
KS ci ratio: 1.109476e-01	ci left: 2.648874e-04	ci right 2.962183e-04	k: 1247	n:4450000
ZNF492   4450000 perm   8755 sec   (508 perm/sec)   p_kst 2.802247e-04   p_cons 5.688079e-01   p_joint 1.128989e-03

Joint ci ratio: 5.521296e-02	ci left: 1.097750e-03	ci right 1.160300e-03	k: 5034	n:4460000
Cons ci ratio: 1.616065e-03	ci left: 5.683620e-01	ci right 5.692814e-01	k: 2536945	n:4460000
KS ci ratio: 1.107260e-01	ci left: 2.653835e-04	ci right 2.967063e-04	k: 1252	n:4460000
ZNF492   4460000 perm   8792 sec   (507 perm/sec)   p_kst 2.807175e-04   p_cons 5.688217e-01   p_joint 1.128700e-03

Joint ci ratio: 5.516369e-02	ci left: 1.097280e-03	ci right 1.159745e-03	k: 5043	n:4470000
Cons ci ratio: 1.614302e-03	ci left: 5.683486e-01	ci right 5.692670e-01	k: 2542571	n:4470000
KS ci ratio: 1.106377e-01	ci left: 2.652248e-04	ci right 2.965023e-04	k: 1254	n:4470000
ZNF492   4470000 perm   8828 sec   (506 perm/sec)   p_kst 2.805369e-04   p_cons 5.688078e-01   p_joint 1.128188e-03

Joint ci ratio: 5.509273e-02	ci left: 1.097692e-03	ci right 1.160098e-03	k: 5056	n:4480000
Cons ci ratio: 1.612524e-03	ci left: 5.683417e-01	ci right 5.692591e-01	k: 2548226	n:4480000
KS ci ratio: 1.104179e-01	ci left: 2.657180e-04	ci right 2.969874e-04	k: 1259	n:4480000
ZNF492   4480000 perm   8865 sec   (505 perm/sec)   p_kst 2.810268e-04   p_cons 5.688004e-01   p_joint 1.128571e-03

Joint ci ratio: 5.502748e-02	ci left: 1.097883e-03	ci right 1.160224e-03	k: 5068	n:4490000
Cons ci ratio: 1.610785e-03	ci left: 5.683246e-01	ci right 5.692410e-01	k: 2553835	n:4490000
KS ci ratio: 1.102431e-01	ci left: 2.659925e-04	ci right 2.972414e-04	k: 1263	n:4490000
ZNF492   4490000 perm   8901 sec   (504 perm/sec)   p_kst 2.812918e-04   p_cons 5.687829e-01   p_joint 1.128731e-03

Joint ci ratio: 5.498412e-02	ci left: 1.097197e-03	ci right 1.159448e-03	k: 5076	n:4500000
Cons ci ratio: 1.609025e-03	ci left: 5.683158e-01	ci right 5.692312e-01	k: 2559481	n:4500000
KS ci ratio: 1.101560e-01	ci left: 2.658336e-04	ci right 2.970375e-04	k: 1265	n:4500000
ZNF492   4500000 perm   8938 sec   (503 perm/sec)   p_kst 2.811111e-04   p_cons 5.687736e-01   p_joint 1.128000e-03

Joint ci ratio: 5.492466e-02	ci left: 1.097169e-03	ci right 1.159350e-03	k: 5087	n:4510000
Cons ci ratio: 1.607203e-03	ci left: 5.683277e-01	ci right 5.692421e-01	k: 2565220	n:4510000
KS ci ratio: 1.100691e-01	ci left: 2.656754e-04	ci right 2.968346e-04	k: 1267	n:4510000
ZNF492   4510000 perm   8976 sec   (502 perm/sec)   p_kst 2.809313e-04   p_cons 5.687849e-01   p_joint 1.127938e-03

Joint ci ratio: 5.487077e-02	ci left: 1.096924e-03	ci right 1.159028e-03	k: 5097	n:4520000
Cons ci ratio: 1.605388e-03	ci left: 5.683391e-01	ci right 5.692524e-01	k: 2570957	n:4520000
KS ci ratio: 1.099824e-01	ci left: 2.655179e-04	ci right 2.966325e-04	k: 1269	n:4520000
ZNF492   4520000 perm   9013 sec   (502 perm/sec)   p_kst 2.807522e-04   p_cons 5.687958e-01   p_joint 1.127655e-03

Joint ci ratio: 5.481704e-02	ci left: 1.096680e-03	ci right 1.158707e-03	k: 5107	n:4530000
Cons ci ratio: 1.603631e-03	ci left: 5.683347e-01	ci right 5.692471e-01	k: 2576623	n:4530000
KS ci ratio: 1.099391e-01	ci left: 2.651465e-04	ci right 2.962045e-04	k: 1270	n:4530000
ZNF492   4530000 perm   9051 sec   (501 perm/sec)   p_kst 2.803532e-04   p_cons 5.687909e-01   p_joint 1.127373e-03

Joint ci ratio: 5.838746e-02	ci left: 9.628865e-04	ci right 1.021013e-03	k: 4502	n:4540000
Cons ci ratio: 1.601857e-03	ci left: 5.683375e-01	ci right 5.692488e-01	k: 2582321	n:4540000
KS ci ratio: 1.098096e-01	ci left: 2.652051e-04	ci right 2.962310e-04	k: 1273	n:4540000
ZNF492   4540000 perm   9087 sec   (500 perm/sec)   p_kst 2.803965e-04   p_cons 5.687932e-01   p_joint 9.916300e-04

Joint ci ratio: 5.832920e-02	ci left: 9.627194e-04	ci right 1.020776e-03	k: 4511	n:4550000
Cons ci ratio: 1.600096e-03	ci left: 5.683378e-01	ci right 5.692481e-01	k: 2588008	n:4550000
KS ci ratio: 1.097666e-01	ci left: 2.648360e-04	ci right 2.958058e-04	k: 1274	n:4550000
ZNF492   4550000 perm   9125 sec   (499 perm/sec)   p_kst 2.800000e-04   p_cons 5.687930e-01   p_joint 9.914286e-04

Joint ci ratio: 4.926716e-02	ci left: 1.352243e-03	ci right 1.420761e-03	k: 6321	n:4560000
Cons ci ratio: 1.598363e-03	ci left: 5.683313e-01	ci right 5.692406e-01	k: 2593664	n:4560000
KS ci ratio: 1.095948e-01	ci left: 2.651083e-04	ci right 2.960583e-04	k: 1278	n:4560000
ZNF492   4560000 perm   9162 sec   (498 perm/sec)   p_kst 2.802632e-04   p_cons 5.687860e-01   p_joint 1.386184e-03

Joint ci ratio: 4.920881e-02	ci left: 1.352526e-03	ci right 1.420975e-03	k: 6336	n:4570000
Cons ci ratio: 1.596632e-03	ci left: 5.683261e-01	ci right 5.692344e-01	k: 2599326	n:4570000
KS ci ratio: 1.095520e-01	ci left: 2.647410e-04	ci right 2.956353e-04	k: 1279	n:4570000
ZNF492   4570000 perm   9199 sec   (497 perm/sec)   p_kst 2.798687e-04   p_cons 5.687803e-01   p_joint 1.386433e-03

Joint ci ratio: 4.915067e-02	ci left: 1.352807e-03	ci right 1.421188e-03	k: 6351	n:4580000
Cons ci ratio: 1.594822e-03	ci left: 5.683469e-01	ci right 5.692543e-01	k: 2605107	n:4580000
KS ci ratio: 1.094238e-01	ci left: 2.648001e-04	ci right 2.956628e-04	k: 1282	n:4580000
ZNF492   4580000 perm   9237 sec   (496 perm/sec)   p_kst 2.799127e-04   p_cons 5.688007e-01   p_joint 1.386681e-03

Joint ci ratio: 4.910431e-02	ci left: 1.352442e-03	ci right 1.420738e-03	k: 6363	n:4590000
Cons ci ratio: 1.593072e-03	ci left: 5.683509e-01	ci right 5.692573e-01	k: 2610811	n:4590000
KS ci ratio: 1.091688e-01	ci left: 2.654946e-04	ci right 2.963615e-04	k: 1288	n:4590000
ZNF492   4590000 perm   9275 sec   (495 perm/sec)   p_kst 2.806100e-04   p_cons 5.688041e-01   p_joint 1.386275e-03

Joint ci ratio: 4.907351e-02	ci left: 1.351220e-03	ci right 1.419410e-03	k: 6371	n:4600000
Cons ci ratio: 1.591392e-03	ci left: 5.683353e-01	ci right 5.692407e-01	k: 2616425	n:4600000
KS ci ratio: 1.089998e-01	ci left: 2.657633e-04	ci right 2.966106e-04	k: 1292	n:4600000
ZNF492   4600000 perm   9313 sec   (494 perm/sec)   p_kst 2.808696e-04   p_cons 5.687880e-01   p_joint 1.385000e-03

Joint ci ratio: 4.901969e-02	ci left: 1.351289e-03	ci right 1.419405e-03	k: 6385	n:4610000
Cons ci ratio: 1.589700e-03	ci left: 5.683252e-01	ci right 5.692296e-01	k: 2622064	n:4610000
KS ci ratio: 1.089156e-01	ci left: 2.656088e-04	ci right 2.964128e-04	k: 1294	n:4610000
ZNF492   4610000 perm   9350 sec   (493 perm/sec)   p_kst 2.806941e-04   p_cons 5.687774e-01   p_joint 1.385033e-03

Joint ci ratio: 4.926760e-02	ci left: 1.334681e-03	ci right 1.402310e-03	k: 6321	n:4620000
Cons ci ratio: 1.587949e-03	ci left: 5.683348e-01	ci right 5.692382e-01	k: 2627794	n:4620000
KS ci ratio: 1.087897e-01	ci left: 2.656656e-04	ci right 2.964382e-04	k: 1297	n:4620000
ZNF492   4620000 perm   9389 sec   (492 perm/sec)   p_kst 2.807359e-04   p_cons 5.687866e-01   p_joint 1.368182e-03

Joint ci ratio: 4.981511e-02	ci left: 1.302361e-03	ci right 1.369107e-03	k: 6183	n:4630000
Cons ci ratio: 1.586228e-03	ci left: 5.683369e-01	ci right 5.692393e-01	k: 2633489	n:4630000
KS ci ratio: 1.086224e-01	ci left: 2.659323e-04	ci right 2.966854e-04	k: 1301	n:4630000
ZNF492   4630000 perm   9428 sec   (491 perm/sec)   p_kst 2.809935e-04   p_cons 5.687881e-01   p_joint 1.335421e-03

Joint ci ratio: 4.977490e-02	ci left: 1.301683e-03	ci right 1.368339e-03	k: 6193	n:4640000
Cons ci ratio: 1.584558e-03	ci left: 5.683249e-01	ci right 5.692263e-01	k: 2639119	n:4640000
KS ci ratio: 1.085807e-01	ci left: 2.655688e-04	ci right 2.962674e-04	k: 1302	n:4640000
ZNF492   4640000 perm   9468 sec   (490 perm/sec)   p_kst 2.806034e-04   p_cons 5.687756e-01   p_joint 1.334698e-03

Joint ci ratio: 4.971873e-02	ci left: 1.301857e-03	ci right 1.368444e-03	k: 6207	n:4650000
Cons ci ratio: 1.582840e-03	ci left: 5.683295e-01	ci right 5.692300e-01	k: 2644826	n:4650000
KS ci ratio: 1.084560e-01	ci left: 2.656253e-04	ci right 2.962929e-04	k: 1305	n:4650000
ZNF492   4650000 perm   9506 sec   (489 perm/sec)   p_kst 2.806452e-04   p_cons 5.687798e-01   p_joint 1.334839e-03

Joint ci ratio: 4.968276e-02	ci left: 1.300970e-03	ci right 1.367463e-03	k: 6216	n:4660000
Cons ci ratio: 1.581048e-03	ci left: 5.683588e-01	ci right 5.692583e-01	k: 2650648	n:4660000
KS ci ratio: 1.083316e-01	ci left: 2.656816e-04	ci right 2.963183e-04	k: 1308	n:4660000
ZNF492   4660000 perm   9544 sec   (488 perm/sec)   p_kst 2.806867e-04   p_cons 5.688086e-01   p_joint 1.333906e-03

Joint ci ratio: 4.978316e-02	ci left: 1.292898e-03	ci right 1.359115e-03	k: 6191	n:4670000
Cons ci ratio: 1.579371e-03	ci left: 5.683539e-01	ci right 5.692524e-01	k: 2656311	n:4670000
KS ci ratio: 1.082077e-01	ci left: 2.657377e-04	ci right 2.963436e-04	k: 1311	n:4670000
ZNF492   4670000 perm   9583 sec   (487 perm/sec)   p_kst 2.807281e-04   p_cons 5.688032e-01   p_joint 1.325696e-03

Joint ci ratio: 4.973901e-02	ci left: 1.292456e-03	ci right 1.358591e-03	k: 6202	n:4680000
Cons ci ratio: 1.577686e-03	ci left: 5.683535e-01	ci right 5.692511e-01	k: 2661995	n:4680000
KS ci ratio: 1.081665e-01	ci left: 2.653778e-04	ci right 2.959298e-04	k: 1312	n:4680000
ZNF492   4680000 perm   9622 sec   (486 perm/sec)   p_kst 2.803419e-04   p_cons 5.688024e-01   p_joint 1.325214e-03

Joint ci ratio: 4.969498e-02	ci left: 1.292017e-03	ci right 1.358068e-03	k: 6213	n:4690000
Cons ci ratio: 1.576009e-03	ci left: 5.683521e-01	ci right 5.692487e-01	k: 2667674	n:4690000
KS ci ratio: 1.081253e-01	ci left: 2.650194e-04	ci right 2.955178e-04	k: 1313	n:4690000
ZNF492   4690000 perm   9660 sec   (485 perm/sec)   p_kst 2.799574e-04   p_cons 5.688004e-01   p_joint 1.324733e-03

Joint ci ratio: 4.987216e-02	ci left: 1.280022e-03	ci right 1.345701e-03	k: 6169	n:4700000
Cons ci ratio: 1.574331e-03	ci left: 5.683528e-01	ci right 5.692484e-01	k: 2673363	n:4700000
KS ci ratio: 1.079611e-01	ci left: 2.652836e-04	ci right 2.957631e-04	k: 1317	n:4700000
ZNF492   4700000 perm   9699 sec   (485 perm/sec)   p_kst 2.802128e-04   p_cons 5.688006e-01   p_joint 1.312553e-03

Joint ci ratio: 4.982778e-02	ci left: 1.279611e-03	ci right 1.345208e-03	k: 6180	n:4710000
Cons ci ratio: 1.572591e-03	ci left: 5.683743e-01	ci right 5.692690e-01	k: 2679150	n:4710000
KS ci ratio: 1.078793e-01	ci left: 2.651335e-04	ci right 2.955712e-04	k: 1319	n:4710000
ZNF492   4710000 perm   9738 sec   (484 perm/sec)   p_kst 2.800425e-04   p_cons 5.688217e-01   p_joint 1.312102e-03

Joint ci ratio: 4.976339e-02	ci left: 1.280248e-03	ci right 1.345790e-03	k: 6196	n:4720000
Cons ci ratio: 1.570952e-03	ci left: 5.683662e-01	ci right 5.692600e-01	k: 2684798	n:4720000
KS ci ratio: 1.077977e-01	ci left: 2.649841e-04	ci right 2.953802e-04	k: 1321	n:4720000
ZNF492   4720000 perm   9777 sec   (483 perm/sec)   p_kst 2.798729e-04   p_cons 5.688131e-01   p_joint 1.312712e-03

Joint ci ratio: 4.887896e-02	ci left: 1.324733e-03	ci right 1.391314e-03	k: 6422	n:4730000
Cons ci ratio: 1.569301e-03	ci left: 5.683635e-01	ci right 5.692563e-01	k: 2690471	n:4730000
KS ci ratio: 1.077163e-01	ci left: 2.648353e-04	ci right 2.951899e-04	k: 1323	n:4730000
ZNF492   4730000 perm   9816 sec   (482 perm/sec)   p_kst 2.797040e-04   p_cons 5.688099e-01   p_joint 1.357717e-03

Joint ci ratio: 4.935060e-02	ci left: 1.296515e-03	ci right 1.362324e-03	k: 6300	n:4740000
Cons ci ratio: 1.567591e-03	ci left: 5.683806e-01	ci right 5.692725e-01	k: 2696238	n:4740000
KS ci ratio: 1.077163e-01	ci left: 2.642766e-04	ci right 2.945672e-04	k: 1323	n:4740000
ZNF492   4740000 perm   9854 sec   (481 perm/sec)   p_kst 2.791139e-04   p_cons 5.688266e-01   p_joint 1.329114e-03

Joint ci ratio: 4.929586e-02	ci left: 1.296697e-03	ci right 1.362440e-03	k: 6314	n:4750000
Cons ci ratio: 1.565936e-03	ci left: 5.683825e-01	ci right 5.692734e-01	k: 2701933	n:4750000
KS ci ratio: 1.075134e-01	ci left: 2.647445e-04	ci right 2.950280e-04	k: 1328	n:4750000
ZNF492   4750000 perm   9893 sec   (480 perm/sec)   p_kst 2.795789e-04   p_cons 5.688280e-01   p_joint 1.329263e-03

Joint ci ratio: 4.925300e-02	ci left: 1.296255e-03	ci right 1.361917e-03	k: 6325	n:4760000
Cons ci ratio: 1.564283e-03	ci left: 5.683852e-01	ci right 5.692752e-01	k: 2707632	n:4760000
KS ci ratio: 1.074326e-01	ci left: 2.645972e-04	ci right 2.948396e-04	k: 1330	n:4760000
ZNF492   4760000 perm   9932 sec   (479 perm/sec)   p_kst 2.794118e-04   p_cons 5.688303e-01   p_joint 1.328782e-03

Joint ci ratio: 4.920635e-02	ci left: 1.296022e-03	ci right 1.361609e-03	k: 6337	n:4770000
Cons ci ratio: 1.562638e-03	ci left: 5.683869e-01	ci right 5.692759e-01	k: 2713326	n:4770000
KS ci ratio: 1.073520e-01	ci left: 2.644505e-04	ci right 2.946521e-04	k: 1332	n:4770000
ZNF492   4770000 perm   9971 sec   (478 perm/sec)   p_kst 2.792453e-04   p_cons 5.688314e-01   p_joint 1.328512e-03

Joint ci ratio: 4.915209e-02	ci left: 1.296204e-03	ci right 1.361725e-03	k: 6351	n:4780000
Cons ci ratio: 1.561014e-03	ci left: 5.683839e-01	ci right 5.692721e-01	k: 2718998	n:4780000
KS ci ratio: 1.071512e-01	ci left: 2.649153e-04	ci right 2.951097e-04	k: 1337	n:4780000
ZNF492   4780000 perm   10213 sec   (468 perm/sec)   p_kst 2.797071e-04   p_cons 5.688280e-01   p_joint 1.328661e-03

Joint ci ratio: 4.907101e-02	ci left: 1.297828e-03	ci right 1.363320e-03	k: 6372	n:4790000
Cons ci ratio: 1.559430e-03	ci left: 5.683697e-01	ci right 5.692569e-01	k: 2724616	n:4790000
KS ci ratio: 1.069914e-01	ci left: 2.651749e-04	ci right 2.953510e-04	k: 1341	n:4790000
ZNF492   4790000 perm   10252 sec   (467 perm/sec)   p_kst 2.799582e-04   p_cons 5.688134e-01   p_joint 1.330271e-03

Joint ci ratio: 4.902103e-02	ci left: 1.297799e-03	ci right 1.363221e-03	k: 6385	n:4800000
Cons ci ratio: 1.557813e-03	ci left: 5.683676e-01	ci right 5.692539e-01	k: 2730292	n:4800000
KS ci ratio: 1.069118e-01	ci left: 2.650280e-04	ci right 2.951635e-04	k: 1343	n:4800000
ZNF492   4800000 perm   10291 sec   (466 perm/sec)   p_kst 2.797917e-04   p_cons 5.688108e-01   p_joint 1.330208e-03

Joint ci ratio: 4.896356e-02	ci left: 1.298181e-03	ci right 1.363544e-03	k: 6400	n:4810000
Cons ci ratio: 1.556159e-03	ci left: 5.683789e-01	ci right 5.692643e-01	k: 2736032	n:4810000
KS ci ratio: 1.069118e-01	ci left: 2.644770e-04	ci right 2.945499e-04	k: 1343	n:4810000
ZNF492   4810000 perm   10331 sec   (466 perm/sec)   p_kst 2.792100e-04   p_cons 5.688216e-01   p_joint 1.330561e-03

Joint ci ratio: 4.892919e-02	ci left: 1.297332e-03	ci right 1.362605e-03	k: 6409	n:4820000
Cons ci ratio: 1.554525e-03	ci left: 5.683853e-01	ci right 5.692698e-01	k: 2741749	n:4820000
KS ci ratio: 1.067927e-01	ci left: 2.645341e-04	ci right 2.945778e-04	k: 1346	n:4820000
ZNF492   4820000 perm   10371 sec   (465 perm/sec)   p_kst 2.792531e-04   p_cons 5.688276e-01   p_joint 1.329668e-03

Joint ci ratio: 4.887584e-02	ci left: 1.297510e-03	ci right 1.362718e-03	k: 6423	n:4830000
Cons ci ratio: 1.552916e-03	ci left: 5.683853e-01	ci right 5.692688e-01	k: 2747435	n:4830000
KS ci ratio: 1.066345e-01	ci left: 2.647924e-04	ci right 2.948182e-04	k: 1350	n:4830000
ZNF492   4830000 perm   10410 sec   (464 perm/sec)   p_kst 2.795031e-04   p_cons 5.688271e-01   p_joint 1.329814e-03

Joint ci ratio: 4.883786e-02	ci left: 1.296870e-03	ci right 1.361994e-03	k: 6433	n:4840000
Cons ci ratio: 1.551286e-03	ci left: 5.683938e-01	ci right 5.692764e-01	k: 2753162	n:4840000
KS ci ratio: 1.065556e-01	ci left: 2.646475e-04	ci right 2.946333e-04	k: 1352	n:4840000
ZNF492   4840000 perm   10449 sec   (463 perm/sec)   p_kst 2.793388e-04   p_cons 5.688351e-01   p_joint 1.329132e-03

Joint ci ratio: 4.879618e-02	ci left: 1.296436e-03	ci right 1.361481e-03	k: 6444	n:4850000
Cons ci ratio: 1.549658e-03	ci left: 5.684030e-01	ci right 5.692847e-01	k: 2758893	n:4850000
KS ci ratio: 1.065557e-01	ci left: 2.641019e-04	ci right 2.940258e-04	k: 1352	n:4850000
ZNF492   4850000 perm   10489 sec   (462 perm/sec)   p_kst 2.787629e-04   p_cons 5.688439e-01   p_joint 1.328660e-03

Joint ci ratio: 4.875460e-02	ci left: 1.296004e-03	ci right 1.360971e-03	k: 6455	n:4860000
Cons ci ratio: 1.548053e-03	ci left: 5.684065e-01	ci right 5.692873e-01	k: 2764596	n:4860000
KS ci ratio: 1.064377e-01	ci left: 2.641593e-04	ci right 2.940545e-04	k: 1355	n:4860000
ZNF492   4860000 perm   10530 sec   (462 perm/sec)   p_kst 2.788066e-04   p_cons 5.688469e-01   p_joint 1.328189e-03

Joint ci ratio: 4.912560e-02	ci left: 1.273669e-03	ci right 1.338015e-03	k: 6358	n:4870000
Cons ci ratio: 1.546441e-03	ci left: 5.684140e-01	ci right 5.692939e-01	k: 2770319	n:4870000
KS ci ratio: 1.061640e-01	ci left: 2.650160e-04	ci right 2.949263e-04	k: 1362	n:4870000
ZNF492   4870000 perm   10570 sec   (461 perm/sec)   p_kst 2.796715e-04   p_cons 5.688540e-01   p_joint 1.305544e-03

Joint ci ratio: 4.907932e-02	ci left: 1.273487e-03	ci right 1.337762e-03	k: 6370	n:4880000
Cons ci ratio: 1.544834e-03	ci left: 5.684211e-01	ci right 5.693001e-01	k: 2776040	n:4880000
KS ci ratio: 1.060086e-01	ci left: 2.652709e-04	ci right 2.951633e-04	k: 1366	n:4880000
ZNF492   4880000 perm   10609 sec   (460 perm/sec)   p_kst 2.799180e-04   p_cons 5.688607e-01   p_joint 1.305328e-03

Joint ci ratio: 4.904471e-02	ci left: 1.272701e-03	ci right 1.336890e-03	k: 6379	n:4890000
Cons ci ratio: 1.543300e-03	ci left: 5.684069e-01	ci right 5.692850e-01	k: 2781657	n:4890000
KS ci ratio: 1.059311e-01	ci left: 2.651266e-04	ci right 2.949796e-04	k: 1368	n:4890000
ZNF492   4890000 perm   10650 sec   (459 perm/sec)   p_kst 2.797546e-04   p_cons 5.688460e-01   p_joint 1.304499e-03

Joint ci ratio: 4.901018e-02	ci left: 1.271918e-03	ci right 1.336021e-03	k: 6388	n:4900000
Cons ci ratio: 1.541788e-03	ci left: 5.683871e-01	ci right 5.692643e-01	k: 2787246	n:4900000
KS ci ratio: 1.058538e-01	ci left: 2.649828e-04	ci right 2.947966e-04	k: 1370	n:4900000
ZNF492   4900000 perm   10690 sec   (458 perm/sec)   p_kst 2.795918e-04   p_cons 5.688257e-01   p_joint 1.303673e-03

Joint ci ratio: 4.896039e-02	ci left: 1.271943e-03	ci right 1.335980e-03	k: 6401	n:4910000
Cons ci ratio: 1.540236e-03	ci left: 5.683816e-01	ci right 5.692579e-01	k: 2792905	n:4910000
KS ci ratio: 1.056613e-01	ci left: 2.654346e-04	ci right 2.952414e-04	k: 1375	n:4910000
ZNF492   4910000 perm   10731 sec   (458 perm/sec)   p_kst 2.800407e-04   p_cons 5.688198e-01   p_joint 1.303666e-03

Joint ci ratio: 4.889168e-02	ci left: 1.272971e-03	ci right 1.336968e-03	k: 6419	n:4920000
Cons ci ratio: 1.538638e-03	ci left: 5.683921e-01	ci right 5.692675e-01	k: 2798643	n:4920000
KS ci ratio: 1.055463e-01	ci left: 2.654887e-04	ci right 2.952672e-04	k: 1378	n:4920000
ZNF492   4920000 perm   10772 sec   (457 perm/sec)   p_kst 2.800813e-04   p_cons 5.688299e-01   p_joint 1.304675e-03

Joint ci ratio: 4.884226e-02	ci left: 1.272994e-03	ci right 1.336925e-03	k: 6432	n:4930000
Cons ci ratio: 1.537083e-03	ci left: 5.683907e-01	ci right 5.692652e-01	k: 2804322	n:4930000
KS ci ratio: 1.054317e-01	ci left: 2.655427e-04	ci right 2.952928e-04	k: 1381	n:4930000
ZNF492   4930000 perm   10813 sec   (456 perm/sec)   p_kst 2.801217e-04   p_cons 5.688280e-01   p_joint 1.304665e-03

Joint ci ratio: 4.881573e-02	ci left: 1.271817e-03	ci right 1.335653e-03	k: 6439	n:4940000
Cons ci ratio: 1.535504e-03	ci left: 5.683982e-01	ci right 5.692718e-01	k: 2810045	n:4940000
KS ci ratio: 1.053936e-01	ci left: 2.652022e-04	ci right 2.949028e-04	k: 1382	n:4940000
ZNF492   4940000 perm   10851 sec   (455 perm/sec)   p_kst 2.797571e-04   p_cons 5.688350e-01   p_joint 1.303441e-03

Joint ci ratio: 4.878168e-02	ci left: 1.271043e-03	ci right 1.334795e-03	k: 6448	n:4950000
Cons ci ratio: 1.533929e-03	ci left: 5.684060e-01	ci right 5.692788e-01	k: 2815770	n:4950000
KS ci ratio: 1.052794e-01	ci left: 2.652566e-04	ci right 2.949291e-04	k: 1385	n:4950000
ZNF492   4950000 perm   10891 sec   (454 perm/sec)   p_kst 2.797980e-04   p_cons 5.688424e-01   p_joint 1.302626e-03

Joint ci ratio: 4.879690e-02	ci left: 1.267684e-03	ci right 1.331288e-03	k: 6444	n:4960000
Cons ci ratio: 1.532377e-03	ci left: 5.684082e-01	ci right 5.692800e-01	k: 2821467	n:4960000
KS ci ratio: 1.052036e-01	ci left: 2.651144e-04	ci right 2.947483e-04	k: 1387	n:4960000
ZNF492   4960000 perm   10932 sec   (454 perm/sec)   p_kst 2.796371e-04   p_cons 5.688442e-01   p_joint 1.299194e-03

Joint ci ratio: 4.877802e-02	ci left: 1.266127e-03	ci right 1.329627e-03	k: 6449	n:4970000
Cons ci ratio: 1.530868e-03	ci left: 5.683979e-01	ci right 5.692689e-01	k: 2827102	n:4970000
KS ci ratio: 1.051657e-01	ci left: 2.647769e-04	ci right 2.943618e-04	k: 1388	n:4970000
ZNF492   4970000 perm   10973 sec   (453 perm/sec)   p_kst 2.792757e-04   p_cons 5.688334e-01   p_joint 1.297586e-03

Joint ci ratio: 4.873271e-02	ci left: 1.265965e-03	ci right 1.329396e-03	k: 6461	n:4980000
Cons ci ratio: 1.529334e-03	ci left: 5.683970e-01	ci right 5.692671e-01	k: 2832784	n:4980000
KS ci ratio: 1.051658e-01	ci left: 2.642452e-04	ci right 2.937707e-04	k: 1388	n:4980000
ZNF492   4980000 perm   11014 sec   (452 perm/sec)   p_kst 2.787149e-04   p_cons 5.688321e-01   p_joint 1.297390e-03

Joint ci ratio: 4.869506e-02	ci left: 1.265407e-03	ci right 1.328761e-03	k: 6471	n:4990000
Cons ci ratio: 1.527761e-03	ci left: 5.684102e-01	ci right 5.692795e-01	k: 2838536	n:4990000
KS ci ratio: 1.050901e-01	ci left: 2.641059e-04	ci right 2.935933e-04	k: 1390	n:4990000
ZNF492   4990000 perm   11054 sec   (451 perm/sec)   p_kst 2.785571e-04   p_cons 5.688449e-01   p_joint 1.296794e-03

Joint ci ratio: 4.863872e-02	ci left: 1.265840e-03	ci right 1.329140e-03	k: 6486	n:5000000
Cons ci ratio: 1.526211e-03	ci left: 5.684178e-01	ci right 5.692861e-01	k: 2844260	n:5000000
KS ci ratio: 1.050147e-01	ci left: 2.639672e-04	ci right 2.934166e-04	k: 1392	n:5000000
ZNF492   5000000 perm   11095 sec   (451 perm/sec)   p_kst 2.784000e-04   p_cons 5.688520e-01   p_joint 1.297200e-03

Outputting figure to mutsig2_images.part000000000197/ZNF492.4_1608_5000000_0.0002784_0.56885_0.0012972.png
                gene_name: ZNF492
               theta_stop: 0.11 
                    nperm: 5000000 
                     p_ks: 0.00028 
        ci_ks_bounds_left: 0.00026 
       ci_ks_bounds_right: 0.00029 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.0013 
     ci_joint_bounds_left: 0.0013 
    ci_joint_bounds_right: 0.0013 

Current progress: 17 percent done.
ZNF536
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.129120e-02	ci left: 7.638510e-01	ci right 7.803902e-01	k: 7722	n:10000
KS ci ratio: 2.674720e-02	ci left: 6.730726e-01	ci right 6.914211e-01	k: 6823	n:10000
ZNF536   10000 perm   2 sec   (5160 perm/sec)   p_kst 6.823000e-01   p_cons 7.722000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000197/ZNF536.3_3919_10000_0.6823_0.7722_1.png
                gene_name: ZNF536
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
ZNF423
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.539580e-02	ci left: 8.595750e-01	ci right 8.730108e-01	k: 8664	n:10000
KS ci ratio: 1.764158e-02	ci left: 8.241191e-01	ci right 8.388872e-01	k: 8316	n:10000
ZNF423   10000 perm   2 sec   (5382 perm/sec)   p_kst 8.316000e-01   p_cons 8.664000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000197/ZNF423.2_3887_10000_0.8316_0.8664_1.png
                gene_name: ZNF423
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
ZNF462
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.739707e-02	ci left: 6.624978e-01	ci right 6.810020e-01	k: 6718	n:10000
Cons ci ratio: 7.665324e-02	ci left: 1.992924e-01	ci right 2.152785e-01	k: 2072	n:10000
KS ci ratio: 2.327139e-02	ci left: 7.306776e-01	ci right 7.479828e-01	k: 7394	n:10000
ZNF462   10000 perm   2 sec   (4337 perm/sec)   p_kst 7.394000e-01   p_cons 2.072000e-01   p_joint 6.718000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF462.2_7569_10000_0.7394_0.2072_0.6718.png
                gene_name: ZNF462
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 67 percent done.
ZNF485
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.510420e-01	ci left: 2.080800e-02	ci right 2.687375e-02	k: 237	n:10000
Cons ci ratio: 9.909574e-02	ci left: 1.285551e-01	ci right 1.420581e-01	k: 1352	n:10000
KS ci ratio: 1.862839e-01	ci left: 3.843896e-02	ci right 4.643037e-02	k: 423	n:10000
ZNF485   10000 perm   2 sec   (6463 perm/sec)   p_kst 4.230000e-02   p_cons 1.352000e-01   p_joint 2.370000e-02

Joint ci ratio: 1.077657e-01	ci left: 5.869667e-02	ci right 6.543134e-02	k: 1240	n:20000
Cons ci ratio: 6.740259e-02	ci left: 1.397527e-01	ci right 1.495508e-01	k: 2892	n:20000
KS ci ratio: 1.337986e-01	ci left: 3.839058e-02	ci right 4.394383e-02	k: 822	n:20000
ZNF485   20000 perm   3 sec   (5744 perm/sec)   p_kst 4.110000e-02   p_cons 1.446000e-01   p_joint 6.200000e-02

Joint ci ratio: 5.221928e-02	ci left: 1.539882e-01	ci right 1.622782e-01	k: 4743	n:30000
Cons ci ratio: 5.466297e-02	ci left: 1.423186e-01	ci right 1.503500e-01	k: 4389	n:30000
KS ci ratio: 1.106806e-01	ci left: 3.790787e-02	ci right 4.238175e-02	k: 1203	n:30000
ZNF485   30000 perm   5 sec   (5464 perm/sec)   p_kst 4.010000e-02   p_cons 1.463000e-01   p_joint 1.581000e-01

Joint ci ratio: 4.996636e-02	ci left: 1.300080e-01	ci right 1.366953e-01	k: 5333	n:40000
Cons ci ratio: 4.716203e-02	ci left: 1.437906e-01	ci right 1.507607e-01	k: 5890	n:40000
KS ci ratio: 9.543020e-02	ci left: 3.854024e-02	ci right 4.242683e-02	k: 1618	n:40000
ZNF485   40000 perm   8 sec   (5281 perm/sec)   p_kst 4.045000e-02   p_cons 1.472500e-01   p_joint 1.333250e-01

Outputting figure to mutsig2_images.part000000000197/ZNF485.2_1342_40000_0.04045_0.14725_0.13332.png
                gene_name: ZNF485
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 83 percent done.
ZNF518A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.257634e-02	ci left: 4.488969e-01	ci right 4.685272e-01	k: 4587	n:10000
Cons ci ratio: 6.658135e-02	ci left: 2.487538e-01	ci right 2.659878e-01	k: 2573	n:10000
KS ci ratio: 1.906036e-02	ci left: 8.009530e-01	ci right 8.164667e-01	k: 8088	n:10000
ZNF518A   10000 perm   2 sec   (5317 perm/sec)   p_kst 8.088000e-01   p_cons 2.573000e-01   p_joint 4.587000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF518A.2_4455_10000_0.8088_0.2573_0.4587.png
                gene_name: ZNF518A
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000197
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 197 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1431>
Subject: Job 9878396: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1431>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000198> was used as the working directory.
Started at Fri Oct  5 23:03:26 2012
Results reported at Fri Oct  5 23:06:18 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000198.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000198.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 198  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000198.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    136.67 sec.
    Max Memory :      1718 MB
    Max Swap   :      4502 MB

    Max Processes  :         7
    Max Threads    :        55

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
198
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 198
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 198: processing genes 17863 - 17953
Calculating significance of each gene.
Using projection method.
17863	ZNF550	1
17864	ZNF551	1
17865	ZNF552	1
17866	ZNF554	1
17867	ZNF555	1
17868	ZNF556	1
17869	ZNF557	1
17870	ZNF558	1
17871	ZNF559	1
17872	ZNF560	1
17873	ZNF561	1
17874	ZNF562	4.013886e-02
17875	ZNF563	1
17876	ZNF564	1
17877	ZNF565	1
17878	ZNF566	1
17879	ZNF567	1
17880	ZNF568	1
17881	ZNF569	1
17882	ZNF57	1
17883	ZNF570	1
17884	ZNF571	1
17885	ZNF572	1
17886	ZNF573	1
17887	ZNF574	3.148419e-01
17888	ZNF575	1
17889	ZNF576	1
17890	ZNF577	1
17891	ZNF578	1
17892	ZNF580	1
17893	ZNF581	1
17894	ZNF582	1
17895	ZNF583	1
17896	ZNF584	1
17897	ZNF585A	1
17898	ZNF585B	1.145824e-01
17899	ZNF586	1
17900	ZNF587	1
17901	ZNF589	1
17902	ZNF592	1
17903	ZNF593	1
17904	ZNF594	1
17905	ZNF595	1
17906	ZNF596	1
17907	ZNF597	1
17908	ZNF598	1
17909	ZNF599	1
17910	ZNF600	7.131394e-02
17911	ZNF605	1
17912	ZNF606	1
17913	ZNF607	1
17914	ZNF608	1
17915	ZNF609	1
17916	ZNF610	1
17917	ZNF611	1
17918	ZNF613	1
17919	ZNF614	1
17920	ZNF615	1
17921	ZNF616	2.308860e-01
17922	ZNF618	1
17923	ZNF619	1
17924	ZNF620	1
17925	ZNF621	6.525328e-02
17926	ZNF622	4.791060e-02
17927	ZNF623	1
17928	ZNF624	1
17929	ZNF625	1
17930	ZNF626	1
17931	ZNF627	1
17932	ZNF628	1
17933	ZNF629	1.447031e-01
17934	ZNF630	1
In gene ZNF638 the following bins exceed PROBCAP:
    PRAD-CH-5772	categ 6	N = 6045    n = 1	mu =   3.94e-07
17935	ZNF638	2.925887e-01
17936	ZNF639	1
17937	ZNF641	1
17938	ZNF642	1
17939	ZNF643	1
17940	ZNF644	1
17941	ZNF645	1
17942	ZNF646	1
17943	ZNF648	1
17944	ZNF649	1
17945	ZNF652	1
17946	ZNF653	1
17947	ZNF654	1
17948	ZNF655	1
17949	ZNF658	2.298257e-01
17950	ZNF660	1
17951	ZNF662	1
17952	ZNF664	1
17953	ZNF665	1
Done

Running MutSig 2:
Scatter job 198: processing genes 17863 - 17953
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000198
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 198 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1427>
Subject: Job 9878398: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1427>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000199> was used as the working directory.
Started at Fri Oct  5 23:03:26 2012
Results reported at Fri Oct  5 23:05:14 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000199.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000199.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 199  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000199.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    132.03 sec.
    Max Memory :       875 MB
    Max Swap   :      3716 MB

    Max Processes  :         7
    Max Threads    :        55

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
199
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 199
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 199: processing genes 17954 - 18043
Calculating significance of each gene.
Using projection method.
17954	ZNF667	1
17955	ZNF668	1
17956	ZNF669	1
17957	ZNF670	1
17958	ZNF671	1
17959	ZNF672	1
17960	ZNF673	1
17961	ZNF674	1
17962	ZNF675	1
17963	ZNF676	8.456847e-02
17964	ZNF677	1
17965	ZNF678	4.387835e-02
17966	ZNF679	1
17967	ZNF680	1
17968	ZNF681	1
17969	ZNF682	1
17970	ZNF683	1
17971	ZNF684	1
17972	ZNF687	1
17973	ZNF688	1
17974	ZNF689	1
17975	ZNF69	1
17976	ZNF691	1
17977	ZNF692	1
17978	ZNF695	5.985741e-02
17979	ZNF696	1
17980	ZNF697	1
17981	ZNF699	1
17982	ZNF7	1
17983	ZNF70	1
17984	ZNF700	1
17985	ZNF701	1
17986	ZNF704	1
17987	ZNF705A	1
17988	ZNF706	1
17989	ZNF707	1
17990	ZNF708	1
17991	ZNF709	1.372668e-01
17992	ZNF71	1.608184e-01
17993	ZNF710	1
17994	ZNF711	1
17995	ZNF713	1.055125e-01
17996	ZNF714	1
17997	ZNF716	1
17998	ZNF718	1
17999	ZNF720	1
18000/18134 18000	ZNF721	1
18001	ZNF727	1
18002	ZNF732	1
18003	ZNF735	3.746173e-02
18004	ZNF736	1
18005	ZNF737	1
18006	ZNF74	1
18007	ZNF740	1
18008	ZNF746	1
18009	ZNF747	1.245454e-02
18010	ZNF749	1.710705e-01
18011	ZNF750	1
18012	ZNF75A	1
18013	ZNF75D	1
18014	ZNF76	1
18015	ZNF761	1
18016	ZNF763	1
18017	ZNF764	1
18018	ZNF765	1
18019	ZNF766	1
18020	ZNF768	1
18021	ZNF77	1
18022	ZNF770	1
18023	ZNF772	1
18024	ZNF773	1
18025	ZNF774	1
18026	ZNF775	1
18027	ZNF776	1
18028	ZNF777	1
18029	ZNF778	1.833804e-01
18030	ZNF780A	1
18031	ZNF780B	1
18032	ZNF781	8.309470e-02
18033	ZNF782	3.396648e-02
18034	ZNF784	1
18035	ZNF785	1
18036	ZNF786	1
18037	ZNF787	1
18038	ZNF789	1
18039	ZNF79	1
18040	ZNF790	1
18041	ZNF791	1
18042	ZNF792	1
18043	ZNF793	1
Done

Running MutSig 2:
Scatter job 199: processing genes 17954 - 18043
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000199
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 199 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1711>
Subject: Job 9878399: <scatter_179984> Done

Job <scatter_179984> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1711>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000200> was used as the working directory.
Started at Fri Oct  5 23:03:26 2012
Results reported at Fri Oct  5 23:11:56 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000200.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000200.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 200  -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000200.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    527.37 sec.
    Max Memory :      2121 MB
    Max Swap   :      4652 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
200
-i
PRAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt
-genes
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt
-b
hg19
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg19/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x117 char]
                               covfile: [1x133 char]
                               mutfile: [1x108 char]
                               catfile: [1x134 char]
                              genelist: [1x73 char]
                                 build: 'hg19'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg19'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg19'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x138 char]
        mutation_filtering_report_file: './PRAD.mutation_filtering_report.txt'
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 200
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "PRAD"
Loading coverage... 

The following 728 genes have very low coverage and are being omitted:
    'A2LD1'            [         0]
    'AG2'              [         0]
    'AGBL3'            [         0]
    'AMY1A'            [    0.1109]
    'AMY1B'            [    0.1109]
    'AMY1C'            [    0.1109]
    'ANKRD18A'         [    0.1293]
    'ANKRD20A2'        [    0.1028]
    'ANKRD20A3'        [    0.2232]
    'ANKRD31'          [         0]
    'ANKRD33B'         [         0]
    'ANKRD34C'         [         0]
    'ANKRD43'          [    0.2448]
    'ANKRD58'          [    0.1802]
    'ANKRD9'           [    0.1620]
    'ANXA8'            [    0.0247]
    'ANXA8L1'          [    0.0247]
    'ANXA8L2'          [    0.2420]
    'APLN'             [    0.0504]
    'ARHGAP23'         [         0]
    'ARHGAP40'         [         0]
    'ARHGAP42'         [         0]
    'ARHGEF33'         [         0]
    'ARL17A'           [    0.0529]
    'ARL17B'           [    0.0299]
    'ARL5C'            [         0]
    'ARX'              [    0.1544]
    'ASAH2B'           [    0.1996]
    'ASCL2'            [    0.0048]
    'ATXN1L'           [         0]
    'ATXN7L1'          [    0.1733]
    'ATXN7L3B'         [    0.1433]
    'B3GALT6'          [    0.1897]
    'BCORL2'           [         0]
    'BEAN'             [         0]
    'BET3L'            [         0]
    'BHLHA15'          [    0.0893]
    'BHLHA9'           [         0]
    'BOLA2'            [         0]
    'BOLA2B'           [         0]
    'BOP1'             [    0.0968]
    'BPY2'             [    0.0579]
    'BPY2B'            [    0.0579]
    'BPY2C'            [    0.0579]
    'BSPH1'            [         0]
    'BTBD18'           [         0]
    'BTBD19'           [         0]
    'C10orf105'        [         0]
    'C10orf122'        [         0]
    'C10orf131'        [         0]
    'C11orf20'         [    0.2218]
    'C11orf21'         [         0]
    'C11orf34'         [         0]
    'C11orf86'         [         0]
    'C11orf90'         [         0]
    'C11orf91'         [         0]
    'C11orf93'         [         0]
    'C11orf95'         [         0]
    'C12orf70'         [         0]
    'C12orf73'         [         0]
    'C12orf75'         [         0]
    'C13orf38'         [         0]
    'C14orf176'        [         0]
    'C14orf38'         [         0]
    'C15orf61'         [         0]
    'C15orf62'         [         0]
    'C16orf52'         [         0]
    'C16orf74'         [    0.1534]
    'C17orf105'        [         0]
    'C17orf106'        [         0]
    'C17orf107'        [         0]
    'C17orf51'         [         0]
    'C17orf72'         [         0]
    'C17orf89'         [    0.1414]
    'C17orf96'         [         0]
    'C17orf97'         [    0.0107]
    'C17orf99'         [         0]
    'C18orf56'         [    0.2136]
    'C19orf20'         [    0.1099]
    'C19orf24'         [    0.0102]
    'C19orf38'         [         0]
    'C19orf69'         [         0]
    'C19orf71'         [         0]
    'C19orf76'         [    0.1668]
    'C19orf77'         [         0]
    'C1orf185'         [         0]
    'C1orf204'         [    0.0028]
    'C1orf212'         [    0.2304]
    'C1orf223'         [         0]
    'C1orf228'         [         0]
    'C1orf229'         [6.0833e-04]
    'C1orf230'         [         0]
    'C1orf68'          [         0]
    'C1orf70'          [         0]
    'C20orf123'        [         0]
    'C20orf173'        [         0]
    'C20orf201'        [    0.1604]
    'C20orf202'        [         0]
    'C20orf203'        [         0]
    'C22orf26'         [    0.0091]
    'C22orf30'         [    0.1171]
    'C22orf41'         [         0]
    'C22orf46'         [         0]
    'C2CD4B'           [    0.0603]
    'C2CD4C'           [         0]
    'C2CD4D'           [         0]
    'C2orf27A'         [    0.0532]
    'C2orf27B'         [    0.0796]
    'C2orf72'          [         0]
    'C2orf74'          [         0]
    'C2orf81'          [         0]
    'C2orf82'          [    0.0130]
    'C3orf16'          [         0]
    'C3orf77'          [         0]
    'C3orf78'          [         0]
    'C4A'              [    0.1331]
    'C4B'              [    0.1331]
    'C4orf47'          [         0]
    'C4orf48'          [         0]
    'C4orf52'          [         0]
    'C5orf47'          [         0]
    'C5orf52'          [         0]
    'C5orf60'          [         0]
    'C6orf103'         [         0]
    'C6orf132'         [         0]
    'C6orf141'         [         0]
    'C6orf163'         [         0]
    'C6orf52'          [         0]
    'C6orf94'          [         0]
    'C7orf71'          [         0]
    'C7orf72'          [         0]
    'C8orf30A'         [    0.0483]
    'C8orf48'          [         0]
    'C8orf55'          [    0.1776]
    'C8orf83'          [         0]
    'C9orf144B'        [         0]
    'C9orf169'         [         0]
    'C9orf57'          [         0]
    'CALHM3'           [         0]
    'CAPN14'           [         0]
    'CAPN8'            [         0]
    'CBWD3'            [    0.2062]
    'CBWD5'            [    0.2307]
    'CBY3'             [         0]
    'CCDC152'          [         0]
    'CCDC154'          [         0]
    'CCDC42B'          [         0]
    'CCDC79'           [         0]
    'CCDC85B'          [    0.1455]
    'CCDC85C'          [         0]
    'CCL3L1'           [    0.1690]
    'CCL3L3'           [    0.1690]
    'CCL4L1'           [    0.2284]
    'CCL4L2'           [    0.2284]
    'CD24'             [         0]
    'CDC42EP5'         [    0.0389]
    'CDHR4'            [    0.1622]
    'CDKN1C'           [    0.1566]
    'CDY1'             [         0]
    'CDY1B'            [         0]
    'CDY2A'            [         0]
    'CDY2B'            [         0]
    'CEBPA'            [    0.2463]
    'CEBPB'            [    0.2453]
    'CFC1'             [    0.1379]
    'CFC1B'            [    0.1379]
    'CHADL'            [    0.0136]
    'CHIC1'            [    0.1768]
    'CISD3'            [         0]
    'CITED4'           [    0.0269]
    'CLDN24'           [         0]
    'CLEC2A'           [         0]
    'CPSF4L'           [         0]
    'CSAG2'            [         0]
    'CSAG3'            [         0]
    'CT45A1'           [    0.0914]
    'CT45A2'           [1.8202e-04]
    'CT45A3'           [         0]
    'CT45A4'           [    0.0245]
    'CT45A6'           [         0]
    'CT47A1'           [    0.0038]
    'CT47A10'          [         0]
    'CT47A11'          [         0]
    'CT47A2'           [         0]
    'CT47A3'           [         0]
    'CT47A4'           [         0]
    'CT47A5'           [         0]
    'CT47A6'           [    0.0125]
    'CT47A7'           [         0]
    'CT47A8'           [         0]
    'CT47A9'           [         0]
    'CTAG1A'           [         0]
    'CTAG1B'           [         0]
    'CTAGE4'           [    0.1464]
    'CTF1'             [    0.2173]
    'CTRB1'            [    0.2440]
    'CTRB2'            [    0.2122]
    'CTU1'             [    0.0905]
    'CTXN2'            [         0]
    'CXorf30'          [         0]
    'CXorf49'          [         0]
    'CXorf49B'         [         0]
    'CXorf51'          [         0]
    'CXorf64'          [         0]
    'CYS1'             [    0.1912]
    'DACT2'            [         0]
    'DACT3'            [    0.1444]
    'DAZ1'             [         0]
    'DAZ2'             [    0.0477]
    'DAZ3'             [    0.0481]
    'DAZ4'             [    0.0340]
    'DDT'              [    0.2144]
    'DEFB103A'         [         0]
    'DEFB103B'         [         0]
    'DEFB105A'         [    0.1002]
    'DEFB105B'         [    0.1002]
    'DEFB107A'         [    0.1241]
    'DEFB107B'         [    0.1241]
    'DEFB130'          [         0]
    'DEFB133'          [         0]
    'DKFZP781G0119'    [         0]
    'DMRTC1'           [    0.1010]
    'DMRTC1B'          [    0.1010]
    'DNAH12'           [    0.1438]
    'DNAH14'           [    0.0509]
    'DNAH6'            [    0.1046]
    'DOC2B'            [         0]
    'DPCR1'            [    0.1957]
    'DTHD1'            [         0]
    'DUX4'             [         0]
    'EBF4'             [    0.0288]
    'EFCAB9'           [         0]
    'EFR3B'            [         0]
    'EIF3C'            [    0.0819]
    'EIF3CL'           [    0.0819]
    'ELFN1'            [    0.0088]
    'EML6'             [         0]
    'EXOSC6'           [    0.0669]
    'EYS'              [    0.1910]
    'F8A1'             [         0]
    'F8A2'             [    0.0558]
    'F8A3'             [         0]
    'FAM149B1'         [         0]
    'FAM156A'          [         0]
    'FAM156B'          [         0]
    'FAM157A'          [         0]
    'FAM157B'          [         0]
    'FAM159B'          [         0]
    'FAM160A1'         [         0]
    'FAM163B'          [    0.1210]
    'FAM170B'          [         0]
    'FAM171A2'         [         0]
    'FAM178B'          [    0.1858]
    'FAM180B'          [         0]
    'FAM184B'          [         0]
    'FAM185A'          [         0]
    'FAM186A'          [         0]
    'FAM189A1'         [         0]
    'FAM194B'          [         0]
    'FAM196B'          [         0]
    'FAM198A'          [         0]
    'FAM200A'          [    0.1230]
    'FAM200B'          [         0]
    'FAM20C'           [    0.2219]
    'FAM23A'           [    0.0477]
    'FAM25A'           [         0]
    'FAM25B'           [         0]
    'FAM25C'           [         0]
    'FAM25G'           [         0]
    'FAM38A'           [         0]
    'FAM38B'           [    0.2080]
    'FAM47E'           [         0]
    'FAM59B'           [         0]
    'FAM71E2'          [         0]
    'FAM75A1'          [    0.2003]
    'FAM75A2'          [    0.2003]
    'FAM75A5'          [    0.0550]
    'FAM75A7'          [    0.0550]
    'FAM90A10'         [         0]
    'FAM90A13'         [         0]
    'FAM90A14'         [         0]
    'FAM90A18'         [         0]
    'FAM90A19'         [         0]
    'FAM90A20'         [         0]
    'FAM90A5'          [         0]
    'FAM90A7'          [         0]
    'FAM90A8'          [         0]
    'FAM90A9'          [         0]
    'FBRSL1'           [         0]
    'FHAD1'            [         0]
    'FIGNL2'           [    0.2058]
    'FLJ25363'         [         0]
    'FLJ36031'         [    0.1713]
    'FLJ43859'         [    0.1473]
    'FLJ44082'         [    0.1596]
    'FLJ44606'         [         0]
    'FOXD1'            [    0.2491]
    'FOXD4L2'          [         0]
    'FOXD4L4'          [         0]
    'FOXD4L6'          [    0.0615]
    'FOXI3'            [    0.0739]
    'FRAT1'            [    0.1914]
    'FRAT2'            [    0.1582]
    'FREM3'            [         0]
    'FRG2'             [    0.1030]
    'FRG2C'            [         0]
    'FSD1L'            [         0]
    'FSIP2'            [    0.2291]
    'GAGE12B'          [    0.0082]
    'GAGE12C'          [    0.0264]
    'GAGE12D'          [    0.0258]
    'GAGE12E'          [    0.0258]
    'GAGE12F'          [    0.0284]
    'GAGE12G'          [    0.0049]
    'GAGE12H'          [    0.0386]
    'GAGE12I'          [    0.0812]
    'GAGE12J'          [    0.1994]
    'GAGE2A'           [    0.1906]
    'GAGE2C'           [    0.2031]
    'GAGE2D'           [    0.1840]
    'GAGE4'            [    0.0812]
    'GAGE5'            [    0.0812]
    'GAGE6'            [         0]
    'GAGE7'            [    0.0812]
    'GATSL1'           [    0.0036]
    'GATSL2'           [    0.0742]
    'GCNT7'            [         0]
    'GDF1'             [    0.0447]
    'GFRA4'            [    0.1647]
    'GIYD1'            [    0.2226]
    'GIYD2'            [    0.2226]
    'GJD3'             [    0.1573]
    'GLYATL3'          [         0]
    'GOLGA6L1'         [    0.0308]
    'GOLGA6L10'        [    0.0145]
    'GOLGA6L6'         [    0.0084]
    'GOLGA6L9'         [         0]
    'GOLGA8A'          [    0.1599]
    'GOLGA8B'          [    0.1498]
    'GP1BB'            [    0.0130]
    'GPR144'           [         0]
    'GPR89C'           [         0]
    'GRAPL'            [         0]
    'GREB1L'           [         0]
    'GRID2IP'          [         0]
    'GRRP1'            [    0.0833]
    'GSTT2'            [    0.2162]
    'GSTT2B'           [    0.1750]
    'GTF2H2'           [    0.2311]
    'H2AFB1'           [    0.1930]
    'H2AFB2'           [         0]
    'H2AFB3'           [    0.1930]
    'H2BFM'            [    0.0705]
    'HBZ'              [    0.2234]
    'HCP5'             [    0.1545]
    'HEATR7A'          [    0.2456]
    'HES2'             [    0.2063]
    'HGC6.3'           [         0]
    'HHLA1'            [         0]
    'HIST2H2AA3'       [         0]
    'HIST2H2AA4'       [         0]
    'HIST2H3A'         [         0]
    'HIST2H3C'         [         0]
    'HIST2H4A'         [         0]
    'HIST2H4B'         [         0]
    'HMGXB3'           [         0]
    'HRK'              [         0]
    'HRNBP3'           [         0]
    'HSBP1L1'          [         0]
    'HSFX1'            [         0]
    'HSFX2'            [         0]
    'HSFY1'            [         0]
    'HSFY2'            [         0]
    'HSPB6'            [    0.0405]
    'IFFO2'            [    0.0837]
    'IGFN1'            [    0.2421]
    'IKBKG'            [    0.1974]
    'IQCF5'            [         0]
    'IQCF6'            [         0]
    'IRGM'             [         0]
    'KBTBD11'          [    0.0314]
    'KBTBD13'          [    0.2202]
    'KCP'              [         0]
    'KIAA0040'         [         0]
    'KIAA1107'         [         0]
    'KIAA1239'         [         0]
    'KIAA1671'         [         0]
    'KIAA1731'         [    0.0179]
    'KILLIN'           [         0]
    'KISS1R'           [    0.1871]
    'KLF2'             [    0.2072]
    'KLHL29'           [         0]
    'KLHL33'           [         0]
    'KPNA7'            [         0]
    'KRTAP2-1'         [         0]
    'KRTAP2-2'         [         0]
    'KRTAP2-4'         [    0.0574]
    'KRTAP20-3'        [         0]
    'KRTAP21-3'        [         0]
    'KRTAP22-2'        [         0]
    'KRTAP25-1'        [         0]
    'KRTAP7-1'         [         0]
    'LCE6A'            [         0]
    'LEUTX'            [         0]
    'LGALS7'           [    0.2381]
    'LIMS3'            [         0]
    'LIPM'             [    0.1182]
    'LIPT2'            [         0]
    'LOC100128071'     [         0]
    'LOC100128542'     [    0.0565]
    'LOC100130274'     [         0]
    'LOC100130933'     [         0]
    'LOC100131801'     [         0]
    'LOC100132247'     [    0.2224]
    'LOC100132963'     [         0]
    'LOC100133893'     [         0]
    'LOC100287428'     [         0]
    'LOC100287718'     [         0]
    'LOC100288797'     [         0]
    'LOC200030'        [    0.0516]
    'LOC221710'        [         0]
    'LOC283999'        [         0]
    'LOC339047'        [    0.0029]
    'LOC342346'        [         0]
    'LOC360030'        [         0]
    'LOC375190'        [         0]
    'LOC388588'        [         0]
    'LOC388946'        [         0]
    'LOC389333'        [         0]
    'LOC389493'        [         0]
    'LOC390595'        [         0]
    'LOC400696'        [    0.1707]
    'LOC401097'        [         0]
    'LOC401387'        [         0]
    'LOC402778'        [         0]
    'LOC441056'        [         0]
    'LOC441294'        [    0.1535]
    'LOC441869'        [         0]
    'LOC642597'        [         0]
    'LOC643008'        [         0]
    'LOC643596'        [         0]
    'LOC643677'        [         0]
    'LOC644538'        [         0]
    'LOC646627'        [         0]
    'LOC646851'        [         0]
    'LOC647309'        [         0]
    'LOC653543'        [         0]
    'LOC653544'        [    0.0287]
    'LOC653545'        [    0.0287]
    'LOC653548'        [    0.0287]
    'LOC728392'        [         0]
    'LOC728410'        [    0.0322]
    'LOC729991'        [         0]
    'LOC730755'        [         0]
    'LOR'              [    0.1842]
    'LOXHD1'           [         0]
    'LRRC10B'          [         0]
    'LRRC26'           [    0.0623]
    'LRRC37A'          [    0.1724]
    'LRRC69'           [         0]
    'LUZP6'            [         0]
    'MAFA'             [    0.2181]
    'MAGEA2'           [         0]
    'MAGEA2B'          [         0]
    'MAGEA9'           [    0.0681]
    'MAGEA9B'          [    0.0681]
    'MAGED4'           [         0]
    'MAGED4B'          [         0]
    'MAP6D1'           [    0.2124]
    'MARVELD1'         [         0]
    'MBD3L2'           [    0.0064]
    'MBD3L3'           [         0]
    'MBD3L4'           [         0]
    'MBD3L5'           [    0.0085]
    'MBOAT4'           [         0]
    'MESP1'            [    0.2177]
    'METTL11B'         [         0]
    'MMP23B'           [    0.0793]
    'MORN2'            [         0]
    'MRGPRG'           [         0]
    'MUC12'            [         0]
    'MYADML2'          [         0]
    'NACAD'            [         0]
    'NAIP'             [    0.1535]
    'NANOS1'           [    0.2272]
    'NAT14'            [    0.0947]
    'NBPF11'           [    0.0516]
    'NBPF4'            [    0.0045]
    'NBPF6'            [    0.0624]
    'NEURL1B'          [         0]
    'NHSL1'            [         0]
    'NKX1-2'           [         0]
    'NKX2-6'           [         0]
    'NOTO'             [         0]
    'NPIPL3'           [    0.1274]
    'NXF2'             [    0.1547]
    'NXF2B'            [    0.1547]
    'OLIG1'            [    0.1637]
    'ONECUT3'          [    0.0091]
    'OR4C45'           [    0.0747]
    'OR4F16'           [         0]
    'OR4F29'           [         0]
    'OR4F3'            [         0]
    'OR6P1'            [         0]
    'OST4'             [         0]
    'OTUD1'            [         0]
    'PABPC1L2A'        [    0.0493]
    'PABPC1L2B'        [2.7402e-04]
    'PABPC4L'          [    0.0485]
    'PALM3'            [         0]
    'PARG'             [    0.2249]
    'PATE3'            [         0]
    'PATE4'            [         0]
    'PATL2'            [         0]
    'PCSK1N'           [    0.0277]
    'PDF'              [    0.2392]
    'PET117'           [         0]
    'PGA4'             [         0]
    'PHGR1'            [         0]
    'PKD1L3'           [         0]
    'PL-5283'          [         0]
    'PNMA6A'           [         0]
    'PNRC2'            [    0.0789]
    'POLR2J2'          [    0.2429]
    'POLR2J3'          [    0.1540]
    'POM121L2'         [         0]
    'POTEB'            [    0.1380]
    'PPIAL4A'          [    0.1005]
    'PPIAL4B'          [    0.1005]
    'PPIAL4C'          [    0.0017]
    'PPIAL4D'          [         0]
    'PPIAL4F'          [         0]
    'PPP1R3G'          [         0]
    'PRAMEF15'         [4.9753e-04]
    'PRAMEF20'         [    0.0948]
    'PRAMEF21'         [    0.0948]
    'PRAMEF22'         [    0.2322]
    'PRAMEF3'          [    0.0734]
    'PRAMEF5'          [    0.1573]
    'PRAMEF6'          [    0.2201]
    'PRAMEF7'          [    0.2037]
    'PRAMEF8'          [    0.1358]
    'PRAMEF9'          [4.9753e-04]
    'PRDM6'            [         0]
    'PRR18'            [    0.2089]
    'PRR20A'           [         0]
    'PRR20B'           [         0]
    'PRR20C'           [         0]
    'PRR20D'           [         0]
    'PRR20E'           [         0]
    'PRR24'            [         0]
    'PRRT4'            [         0]
    'PRSS41'           [    0.0246]
    'PRY'              [         0]
    'PRY2'             [         0]
    'PSMG4'            [         0]
    'PTGER1'           [    0.1673]
    'PTPN20A'          [    0.1118]
    'PTPN20B'          [    0.1118]
    'PTPRQ'            [         0]
    'R3HCC1'           [         0]
    'RAD21L1'          [         0]
    'RASA4'            [    0.1040]
    'RBM20'            [         0]
    'RBMXL3'           [         0]
    'RBMY1A1'          [    0.0530]
    'RBMY1B'           [    0.0996]
    'RBMY1D'           [    0.0996]
    'RBMY1E'           [    0.0798]
    'RBMY1F'           [    0.0502]
    'RBMY1J'           [    0.0502]
    'RESP18'           [         0]
    'REXO1L1'          [    0.0955]
    'RFPL4A'           [         0]
    'RFX8'             [         0]
    'RGPD1'            [    0.1605]
    'RGPD2'            [    0.1641]
    'RGPD5'            [    0.1775]
    'RGPD6'            [8.9060e-05]
    'RGSL1'            [         0]
    'RIMBP3B'          [    0.0198]
    'RIMBP3C'          [    0.0198]
    'RNF187'           [         0]
    'RNF222'           [         0]
    'RPS17'            [         0]
    'SAP25'            [         0]
    'SCT'              [         0]
    'SCXA'             [         0]
    'SCXB'             [         0]
    'SDHAF1'           [    0.0848]
    'SERF1A'           [    0.0012]
    'SERF1B'           [    0.0012]
    'SETD1B'           [         0]
    'SFRS13A'          [    0.1236]
    'SFT2D3'           [         0]
    'SH3D20'           [    0.1698]
    'SHISA6'           [         0]
    'SHISA7'           [         0]
    'SHISA9'           [         0]
    'SLC15A5'          [         0]
    'SLC22A18AS'       [         0]
    'SLC22A24'         [    0.2196]
    'SLFN14'           [         0]
    'SMN1'             [    0.0554]
    'SMN2'             [    0.0544]
    'SP9'              [    0.0568]
    'SPACA5'           [    0.0978]
    'SPACA5B'          [    0.0978]
    'SPANXA1'          [         0]
    'SPANXA2'          [         0]
    'SPANXB1'          [         0]
    'SPANXB2'          [         0]
    'SPANXF1'          [         0]
    'SPANXN4'          [    0.2409]
    'SPATA24'          [         0]
    'SPATA3'           [         0]
    'SPDYE2'           [    0.1023]
    'SPDYE2L'          [    0.1023]
    'SPINT3'           [         0]
    'SPRN'             [    0.0833]
    'SRRM5'            [    0.0824]
    'SSC5D'            [         0]
    'SSX2'             [         0]
    'SSX2B'            [         0]
    'SSX4'             [    0.1392]
    'SSX4B'            [    0.1392]
    'STAG3L1'          [    0.0508]
    'STARD9'           [         0]
    'SULT1A3'          [    0.0180]
    'SULT1A4'          [    0.0180]
    'SYCE1L'           [         0]
    'TARM1'            [         0]
    'TBC1D3'           [    0.1300]
    'TBC1D3C'          [    0.0380]
    'TBC1D3F'          [    0.1300]
    'TBC1D3G'          [    0.1672]
    'TBC1D3H'          [    0.0032]
    'TCEB3CL'          [    0.2371]
    'TCF15'            [    0.1617]
    'TDRD12'           [         0]
    'TEX28'            [         0]
    'TIGD1'            [         0]
    'TLCD2'            [         0]
    'TMEM114'          [         0]
    'TMEM129'          [    0.2132]
    'TMEM132C'         [    0.0489]
    'TMEM151B'         [         0]
    'TMEM158'          [    0.0032]
    'TMEM160'          [    0.1815]
    'TMEM194B'         [         0]
    'TMEM212'          [         0]
    'TMEM229A'         [         0]
    'TMEM232'          [         0]
    'TMEM233'          [         0]
    'TMEM88B'          [         0]
    'TMPRSS11BNL'      [         0]
    'TOMM6'            [         0]
    'TP53TG3'          [         0]
    'TP53TG3B'         [         0]
    'TRIM43B'          [         0]
    'TRIM49L'          [    0.0341]
    'TRIM64'           [         0]
    'TRIM64B'          [         0]
    'TRIM66'           [         0]
    'TRIM77'           [         0]
    'TRNP1'            [         0]
    'TSPY3'            [    0.0653]
    'TSPY4'            [    0.1167]
    'TSTD1'            [         0]
    'TTC28'            [         0]
    'TUSC1'            [    0.1265]
    'TXNRD3'           [         0]
    'UBE2QL1'          [         0]
    'UNC80'            [    0.0866]
    'UNCX'             [    0.2474]
    'UPF0639'          [         0]
    'UPK3BL'           [         0]
    'URB1'             [         0]
    'USP17'            [    0.0068]
    'USP27X'           [    0.1342]
    'UTF1'             [    0.1015]
    'VCY'              [         0]
    'VCY1B'            [         0]
    'VSIG10L'          [         0]
    'VSTM2B'           [         0]
    'VWA5B1'           [         0]
    'VWA5B2'           [    0.0011]
    'VWDE'             [         0]
    'WASH1'            [    0.1765]
    'WDFY4'            [         0]
    'WDR87'            [         0]
    'XAGE1A'           [         0]
    'XAGE1B'           [         0]
    'XAGE1C'           [         0]
    'XAGE1D'           [         0]
    'XAGE1E'           [         0]
    'XAGE2'            [         0]
    'XAGE2B'           [         0]
    'XKRY'             [         0]
    'XKRY2'            [         0]
    'ZAR1L'            [         0]
    'ZBED3'            [    0.0014]
    'ZBED5'            [         0]
    'ZBED6'            [         0]
    'ZBTB42'           [         0]
    'ZBTB8B'           [         0]
    'ZFP62'            [    0.0266]
    'ZFP92'            [         0]
    'ZG16'             [         0]
    'ZNF26'            [         0]
    'ZNF389'           [    0.1174]
    'ZNF444'           [    0.1467]
    'ZNF469'           [         0]
    'ZNF541'           [         0]
    'ZNF579'           [    0.2201]
    'ZNF703'           [    0.2087]
    'ZNF705D'          [    0.2432]
    'ZNF705G'          [         0]
    'ZNF717'           [2.4870e-04]
    'ZNF771'           [    0.1669]
    'ZNF826'           [         0]
    'ZNF837'           [         0]
    'ZNF84'            [         0]
    'ZNF843'           [         0]
    'ZNF853'           [5.9180e-04]
    'ZNF879'           [    0.0967]
    'ZSWIM6'           [         0]
    'ZYG11A'           [         0]

The above 728 genes have very low coverage and are being omitted.
Loading gene list... 

The following 728 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'AG2'
    'AGBL3'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'ANXA8L2'
    'APLN'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ARX'
    'ASAH2B'
    'ASCL2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'B3GALT6'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C11orf20'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf74'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf97'
    'C17orf99'
    'C18orf56'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf76'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf55'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CEBPB'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CHIC1'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'CPSF4L'
    'CSAG2'
    'CSAG3'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTF1'
    'CTRB1'
    'CTRB2'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'CYS1'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DKFZP781G0119'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DOC2B'
    'DPCR1'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM163B'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200A'
    'FAM200B'
    'FAM20C'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A7'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ36031'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD1'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L6'
    'FOXI3'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FRG2'
    'FRG2C'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE2A'
    'GAGE2C'
    'GAGE2D'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GIYD1'
    'GIYD2'
    'GJD3'
    'GLYATL3'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTT2'
    'GSTT2B'
    'GTF2H2'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HEATR7A'
    'HES2'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KISS1R'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-2'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LGALS7'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402778'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC69'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MAP6D1'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'MESP1'
    'METTL11B'
    'MMP23B'
    'MORN2'
    'MRGPRG'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR6P1'
    'OST4'
    'OTUD1'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA4'
    'PHGR1'
    'PKD1L3'
    'PL-5283'
    'PNMA6A'
    'PNRC2'
    'POLR2J2'
    'POLR2J3'
    'POM121L2'
    'POTEB'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4F'
    'PPP1R3G'
    'PRAMEF15'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD5'
    'RGPD6'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF222'
    'RPS17'
    'SAP25'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS13A'
    'SFT2D3'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPANXN4'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPINT3'
    'SPRN'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TBC1D3'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM129'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'UBE2QL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZFP62'
    'ZFP92'
    'ZG16'
    'ZNF26'
    'ZNF389'
    'ZNF444'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF703'
    'ZNF705D'
    'ZNF705G'
    'ZNF717'
    'ZNF771'
    'ZNF826'
    'ZNF837'
    'ZNF84'
    'ZNF843'
    'ZNF853'
    'ZNF879'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 3 double-null mutations.
Removed assignments of their 4 partner-null mutations; these will be omitted from analysis.

                              0     1     2    3     4    5  6      TOTAL  
           Frame_Shift_Del    2     0     0    0     0  151  2        155  
           Frame_Shift_Ins    2     0     0    0     0   79  0         81  
              In_Frame_Del    0     0     0    0     0   54  0         54  
              In_Frame_Ins    0     0     0    0     0   13  0         13  
                  Missense    0     4     8    0    13    4  0         29  
         Missense_Mutation    0   854   931  116  1490    0  0       3391  
         Nonsense_Mutation    0     0     0    0     0  185  0        185  
          Nonstop_Mutation    0     0     0    0     0    4  1          5  
                    Silent    0   492   584   96   356    0  0       1528  
               Splice_Site    0     0     0    0     0  111  0        111  
    Translation_Start_Site    0     7     3    0     1    3  0         14  

                     TOTAL    4  1357  1526  212  1860  604  3       5566  

0 unassigned         
1 *CpG->T            
2 *Np(A/C/T)->transit
3 *ApG->G            
4 transver           
5 indel+null         
6 double_null        
Mutations not in gene set:
         BCL8: [1]
       BTN2A3: [1]
     C16orf74: [1]
    C20orf191: [1]
        CBWD3: [1]
        CLK2P: [1]
       CTAGE6: [1]
      CXCR2P1: [1]
       DNAH12: [1]
    DPY19L2P1: [1]
    DPY19L2P2: [1]
          EYS: [1]
       FAM86D: [1]
     FUNDC2P2: [1]
      GAGE12J: [1]
         GK3P: [1]
    GOLGA6L10: [1]
      GOLGA9P: [1]
     HLA-DQB2: [1]
    HNRNPA3P1: [1]
         HSN2: [1]
    LOC150776: [1]
    LOC202181: [1]
    LOC220429: [1]
    LOC645332: [1]
    LOC647288: [1]
      LRRC37A: [1]
      MEIS3P1: [1]
       NANOS1: [1]
       OR4C45: [1]
          PDF: [1]
      PI4KAP2: [1]
     PIP5K1P1: [1]
     PPP1R2P3: [1]
        RASA4: [1]
    RPL23AP32: [1]
      RPSAP58: [1]
       SDHAP1: [1]
       SDHAP3: [1]
        TCF15: [1]
        UNC80: [1]
       ZNF579: [1]
        ADAM6: [2]
     C17orf97: [2]
       CDC14C: [2]
      COL29A1: [2]
     CSNK2A1P: [2]
      EP400NL: [2]
        ESPNP: [2]
       FAM38B: [2]
     FLJ10213: [2]
    LOC284441: [2]
    LOC442421: [2]
    LOC644165: [2]
    LOC645752: [2]
    LOC653544: [2]
      NSUN5P2: [2]
       OR2M1P: [2]
        PIPSL: [2]
      PRAMEF8: [2]
     RPL13AP6: [2]
         TRY6: [2]
     CYP2D7P1: [3]
      DDX11L2: [3]
     GOLGA8DP: [3]
    HSD17B7P2: [3]
    LOC728989: [3]
        RGPD5: [3]
      RUNDC2C: [3]
     SLC7A5P2: [3]
       SDHAP2: [4]
       WASH2P: [4]
       WASH5P: [4]
        DDX12: [5]
       MST1P9: [5]
       WASH3P: [5]
    RPL13AP20: [6]
       TUBBP5: [6]
        FRG1B: [9]
      Unknown: [49]
    ----TOTAL: [203]
Categories not in categ set:
          NaN: [4]
    ----TOTAL: [4]
Mutations not in categ set:
       B3GNT4: [1]
        FOXA1: [1]
         MLL3: [2]
    ----TOTAL: [4]

Mutations in this patient+gene+categ set: 5359/5566
	0 mutations not in patient set
	203 mutations not in gene set
	4 mutations not in categ set
		(Note: at least 3 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables

All data loaded
Finding number of unique sites, unique patients: 1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   6.05e-06    6.0/Mb  (relative = 3.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.57e-07    0.5/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   2.81e-07    0.3/Mb  (relative = 0.18)  expected NS/S ratio = 2.1
           transver   5.82e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null   1.21e-09    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

PRAD-CH-5737
            *CpG->T   7.09e-06    7.1/Mb  (relative = 2.65)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   1.29e-06    1.3/Mb  (relative = 0.48)  expected NS/S ratio = 2.1
           transver   1.32e-06    1.3/Mb  (relative = 0.49)  expected NS/S ratio = 5.0
         indel+null   3.64e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.68e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5738
            *CpG->T   6.46e-06    6.5/Mb  (relative = 4.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.34e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   2.64e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5739
            *CpG->T   7.28e-06    7.3/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.38e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   6.54e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5740
            *CpG->T   5.36e-06    5.4/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.78e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5741
            *CpG->T   6.53e-06    6.5/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.77e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.30e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.98e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5743
            *CpG->T   5.98e-07    0.6/Mb  (relative = 1.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.47)  expected NS/S ratio = 2.1
           transver   2.00e-07    0.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.66e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5744
            *CpG->T   5.92e-06    5.9/Mb  (relative = 4.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.86e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   9.92e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.29e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5745
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.69)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   4.63e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5746
            *CpG->T   4.21e-06    4.2/Mb  (relative = 2.38)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   6.68e-07    0.7/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   5.01e-07    0.5/Mb  (relative = 0.28)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.77e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5748
            *CpG->T   5.25e-06    5.2/Mb  (relative = 3.17)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.87e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   4.32e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.2
           transver   6.96e-07    0.7/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5750
            *CpG->T   7.61e-06    7.6/Mb  (relative = 4.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.76e-07    0.4/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.2
           transver   5.94e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   3.63e-07    0.4/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5751
            *CpG->T   9.22e-06    9.2/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.08e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   2.14e-07    0.2/Mb  (relative = 0.18)  expected NS/S ratio = 2.2
           transver   2.63e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 5.0
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.22e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5752
            *CpG->T   8.43e-06    8.4/Mb  (relative = 3.83)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.79e-07    0.4/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   6.52e-07    0.7/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   8.67e-07    0.9/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   4.33e-07    0.4/Mb  (relative = 0.20)
        double_null   3.33e-08    0.0/Mb  (relative = 0.02)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5753
            *CpG->T   7.16e-06    7.2/Mb  (relative = 3.48)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.46e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.11)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   4.65e-07    0.5/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.06e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5754
            *CpG->T   6.93e-06    6.9/Mb  (relative = 2.27)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.23e-07    0.6/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.28e-07    0.4/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   1.74e-06    1.7/Mb  (relative = 0.57)  expected NS/S ratio = 5.0
         indel+null   3.61e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.05e-06    3.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5761
            *CpG->T   7.13e-06    7.1/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.30e-07    0.6/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   8.97e-07    0.9/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.99e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.09e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5762
            *CpG->T   1.79e-06    1.8/Mb  (relative = 1.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   8.31e-07    0.8/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.66e-07    0.5/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5763
            *CpG->T   2.42e-06    2.4/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   2.01e-07    0.2/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.02e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5764
            *CpG->T   1.22e-05   12.2/Mb  (relative = 5.36)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.34e-07    0.6/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.1
           transver   8.03e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.68e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.28e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5765
            *CpG->T   7.19e-06    7.2/Mb  (relative = 3.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.64e-07    0.5/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.03e-06    1.0/Mb  (relative = 0.48)  expected NS/S ratio = 5.0
         indel+null   3.34e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5766
            *CpG->T   5.76e-06    5.8/Mb  (relative = 6.04)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.50e-07    0.2/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.62e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   6.58e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.54e-07    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5767
            *CpG->T   5.43e-06    5.4/Mb  (relative = 3.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   6.60e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.1
           transver   5.40e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.69e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5768
            *CpG->T   1.30e-05   13.0/Mb  (relative = 6.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.53e-07    0.6/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G   4.39e-07    0.4/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   7.41e-07    0.7/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5769
            *CpG->T   2.70e-05   27.0/Mb  (relative = 7.58)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.07e-07    0.8/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.38e-07    0.5/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   9.08e-07    0.9/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.56e-06    3.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5771
            *CpG->T   6.59e-06    6.6/Mb  (relative = 5.21)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5772
            *CpG->T   1.33e-05   13.3/Mb  (relative = 4.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.16e-07    0.4/Mb  (relative = 0.15)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   3.94e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5788
            *CpG->T   2.39e-06    2.4/Mb  (relative = 1.71)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.31e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5789
            *CpG->T   2.92e-06    2.9/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.30e-07    0.3/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.92e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5790
            *CpG->T   7.16e-06    7.2/Mb  (relative = 6.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.11e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   3.33e-07    0.3/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5791
            *CpG->T   6.66e-06    6.7/Mb  (relative = 3.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.07e-07    0.5/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   8.72e-07    0.9/Mb  (relative = 0.46)  expected NS/S ratio = 2.1
           transver   7.69e-07    0.8/Mb  (relative = 0.40)  expected NS/S ratio = 5.0
         indel+null   2.01e-07    0.2/Mb  (relative = 0.11)
        double_null   3.34e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5792
            *CpG->T   5.98e-06    6.0/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.33e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.34e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 5.0
         indel+null   2.67e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.53e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-CH-5794
            *CpG->T   4.93e-06    4.9/Mb  (relative = 4.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.40e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.70e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.01e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5494
            *CpG->T   9.08e-06    9.1/Mb  (relative = 8.49)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.54e-07    0.3/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.36e-07    0.4/Mb  (relative = 0.41)  expected NS/S ratio = 2.1
           transver   1.67e-07    0.2/Mb  (relative = 0.16)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.09)
        double_null   3.34e-08    0.0/Mb  (relative = 0.03)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5495
            *CpG->T   2.90e-06    2.9/Mb  (relative = 1.09)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.74e-07    0.9/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   4.29e-07    0.4/Mb  (relative = 0.16)  expected NS/S ratio = 2.2
           transver   1.25e-06    1.2/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   4.93e-07    0.5/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5496
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.44)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.97e-07    0.8/Mb  (relative = 0.41)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.96e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5497
            *CpG->T   2.99e-06    3.0/Mb  (relative = 2.37)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.21e-07    0.4/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.17)  expected NS/S ratio = 2.1
           transver   4.66e-07    0.5/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.66e-07    0.3/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.27e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5498
            *CpG->T   7.12e-06    7.1/Mb  (relative = 4.57)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.62e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   4.33e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.56e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5499
            *CpG->T   5.98e-06    6.0/Mb  (relative = 4.73)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.40)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.32e-07    0.4/Mb  (relative = 0.34)  expected NS/S ratio = 5.0
         indel+null   9.97e-08    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5501
            *CpG->T   4.10e-06    4.1/Mb  (relative = 4.75)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.95e-07    0.3/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.19)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.64e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5502
            *CpG->T   3.05e-06    3.1/Mb  (relative = 6.50)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.47e-08    0.1/Mb  (relative = 0.18)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.68e-07    0.2/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   6.71e-08    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.69e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5503
            *CpG->T   4.84e-06    4.8/Mb  (relative = 3.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.06e-07    0.5/Mb  (relative = 0.36)  expected NS/S ratio = 2.0
            *ApG->G   4.35e-07    0.4/Mb  (relative = 0.31)  expected NS/S ratio = 2.1
           transver   4.67e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.40e-06    1.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5504
            *CpG->T   9.33e-06    9.3/Mb  (relative = 4.35)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.10e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.10)  expected NS/S ratio = 2.2
           transver   8.25e-07    0.8/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5505
            *CpG->T   4.16e-06    4.2/Mb  (relative = 3.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.88e-07    0.6/Mb  (relative = 0.48)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   3.98e-07    0.4/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.23e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5506
            *CpG->T   5.33e-06    5.3/Mb  (relative = 6.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.19e-08    0.0/Mb  (relative = 0.05)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 2.1
           transver   3.64e-07    0.4/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.61e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5507
            *CpG->T   1.02e-05   10.2/Mb  (relative = 5.88)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.19)  expected NS/S ratio = 2.0
            *ApG->G   8.67e-07    0.9/Mb  (relative = 0.50)  expected NS/S ratio = 2.1
           transver   5.65e-07    0.6/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.00e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.73e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5508
            *CpG->T   6.55e-06    6.5/Mb  (relative = 4.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.65e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.32e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.33e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5509
            *CpG->T   5.58e-06    5.6/Mb  (relative = 3.51)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.55e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 2.0
            *ApG->G   2.21e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.09e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 5.0
         indel+null   2.03e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5510
            *CpG->T   3.66e-06    3.7/Mb  (relative = 3.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.35e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.38e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5511
            *CpG->T   4.82e-06    4.8/Mb  (relative = 3.60)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   6.03e-07    0.6/Mb  (relative = 0.45)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5512
            *CpG->T   5.37e-06    5.4/Mb  (relative = 4.25)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.36e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   5.31e-07    0.5/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5514
            *CpG->T   6.53e-06    6.5/Mb  (relative = 3.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   8.65e-07    0.9/Mb  (relative = 0.52)  expected NS/S ratio = 2.1
           transver   5.97e-07    0.6/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   1.66e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5515
            *CpG->T   2.46e-06    2.5/Mb  (relative = 2.19)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.01e-07    0.3/Mb  (relative = 0.27)  expected NS/S ratio = 2.0
            *ApG->G   2.22e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.1
           transver   5.79e-07    0.6/Mb  (relative = 0.52)  expected NS/S ratio = 5.0
         indel+null   1.36e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5516
            *CpG->T   4.73e-06    4.7/Mb  (relative = 2.91)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.28e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.63e-07    0.6/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   2.65e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5517
            *CpG->T   3.53e-06    3.5/Mb  (relative = 2.43)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.18e-07    0.4/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.27e-07    0.7/Mb  (relative = 0.50)  expected NS/S ratio = 5.0
         indel+null   1.98e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5518
            *CpG->T   5.53e-06    5.5/Mb  (relative = 3.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.23e-07    0.7/Mb  (relative = 0.43)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.13)  expected NS/S ratio = 2.1
           transver   5.39e-07    0.5/Mb  (relative = 0.32)  expected NS/S ratio = 5.0
         indel+null   2.36e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5519
            *CpG->T   6.20e-06    6.2/Mb  (relative = 1.82)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.02e-06    1.0/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.59e-06    1.6/Mb  (relative = 0.47)  expected NS/S ratio = 5.0
         indel+null   6.75e-07    0.7/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.41e-06    3.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5521
            *CpG->T   7.39e-06    7.4/Mb  (relative = 3.72)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.66e-07    0.8/Mb  (relative = 0.39)  expected NS/S ratio = 2.0
            *ApG->G   6.59e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   6.06e-07    0.6/Mb  (relative = 0.31)  expected NS/S ratio = 5.0
         indel+null   2.70e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.99e-06    2.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5522
            *CpG->T   6.58e-06    6.6/Mb  (relative = 7.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.10e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   2.99e-07    0.3/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.98e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5524
            *CpG->T   8.97e-06    9.0/Mb  (relative = 5.00)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.04e-07    0.5/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.17e-07    0.2/Mb  (relative = 0.12)  expected NS/S ratio = 2.1
           transver   7.31e-07    0.7/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   1.33e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5525
            *CpG->T   7.58e-06    7.6/Mb  (relative = 2.67)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.26e-07    0.6/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   2.15e-07    0.2/Mb  (relative = 0.08)  expected NS/S ratio = 2.2
           transver   1.22e-06    1.2/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.59e-07    0.7/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.84e-06    2.8/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5526
            *CpG->T   5.87e-06    5.9/Mb  (relative = 5.07)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.35e-07    0.3/Mb  (relative = 0.29)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 2.2
           transver   2.64e-07    0.3/Mb  (relative = 0.23)  expected NS/S ratio = 5.0
         indel+null   2.31e-07    0.2/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.16e-06    1.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5527
            *CpG->T   4.72e-06    4.7/Mb  (relative = 3.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.51e-07    0.3/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G   4.31e-07    0.4/Mb  (relative = 0.30)  expected NS/S ratio = 2.1
           transver   5.95e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   3.30e-07    0.3/Mb  (relative = 0.23)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.45e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5530
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.53)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.08e-07    0.8/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.09)  expected NS/S ratio = 2.1
           transver   7.08e-07    0.7/Mb  (relative = 0.29)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.46e-06    2.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5531
            *CpG->T   7.24e-06    7.2/Mb  (relative = 3.21)  expected NS/S ratio = 2.2
*Np(A/C/T)->transit   1.18e-06    1.2/Mb  (relative = 0.52)  expected NS/S ratio = 2.0
            *ApG->G   7.37e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.1
           transver   5.27e-07    0.5/Mb  (relative = 0.23)  expected NS/S ratio = 5.1
         indel+null   3.01e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.26e-06    2.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5532
            *CpG->T   5.58e-06    5.6/Mb  (relative = 5.90)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.99e-07    0.3/Mb  (relative = 0.32)  expected NS/S ratio = 2.0
            *ApG->G   2.20e-07    0.2/Mb  (relative = 0.23)  expected NS/S ratio = 2.1
           transver   2.37e-07    0.2/Mb  (relative = 0.25)  expected NS/S ratio = 5.0
         indel+null   1.35e-07    0.1/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.47e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-EJ-5542
            *CpG->T   5.89e-06    5.9/Mb  (relative = 4.45)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.02e-07    0.5/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   4.63e-07    0.5/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   1.32e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.32e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6332
            *CpG->T   3.71e-06    3.7/Mb  (relative = 1.94)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   6.76e-07    0.7/Mb  (relative = 0.35)  expected NS/S ratio = 1.9
            *ApG->G   6.94e-07    0.7/Mb  (relative = 0.36)  expected NS/S ratio = 2.2
           transver   8.17e-07    0.8/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   2.49e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.92e-06    1.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6336
            *CpG->T   4.71e-06    4.7/Mb  (relative = 5.24)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.53e-07    0.3/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.99e-07    0.4/Mb  (relative = 0.44)  expected NS/S ratio = 5.0
         indel+null   3.33e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.99e-07    0.9/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6348
            *CpG->T   2.96e-06    3.0/Mb  (relative = 1.93)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.66e-07    0.5/Mb  (relative = 0.30)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.2
           transver   6.02e-07    0.6/Mb  (relative = 0.39)  expected NS/S ratio = 5.0
         indel+null   3.68e-07    0.4/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6356
            *CpG->T   6.60e-06    6.6/Mb  (relative = 4.01)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.52e-07    0.6/Mb  (relative = 0.34)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.27)  expected NS/S ratio = 2.1
           transver   5.37e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.65e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6362
            *CpG->T   6.65e-06    6.7/Mb  (relative = 4.39)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   5.05e-07    0.5/Mb  (relative = 0.33)  expected NS/S ratio = 5.0
         indel+null   2.69e-07    0.3/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6363
            *CpG->T   3.58e-06    3.6/Mb  (relative = 1.62)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   7.20e-07    0.7/Mb  (relative = 0.33)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.40)  expected NS/S ratio = 2.1
           transver   7.70e-07    0.8/Mb  (relative = 0.35)  expected NS/S ratio = 5.0
         indel+null   5.36e-07    0.5/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6364
            *CpG->T   5.93e-07    0.6/Mb  (relative = 0.59)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.08e-07    0.5/Mb  (relative = 0.51)  expected NS/S ratio = 2.0
            *ApG->G   2.18e-07    0.2/Mb  (relative = 0.22)  expected NS/S ratio = 2.2
           transver   3.68e-07    0.4/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   1.67e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6365
            *CpG->T   4.77e-06    4.8/Mb  (relative = 3.10)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   3.81e-07    0.4/Mb  (relative = 0.25)  expected NS/S ratio = 2.0
            *ApG->G   1.09e-06    1.1/Mb  (relative = 0.71)  expected NS/S ratio = 2.1
           transver   5.69e-07    0.6/Mb  (relative = 0.37)  expected NS/S ratio = 5.0
         indel+null   2.34e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.54e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6367
            *CpG->T   5.89e-07    0.6/Mb  (relative = 1.18)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   8.42e-08    0.1/Mb  (relative = 0.17)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.67)  expected NS/S ratio = 5.0
         indel+null   6.65e-08    0.1/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.99e-07    0.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6370
            *CpG->T   1.20e-06    1.2/Mb  (relative = 3.26)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.46)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   1.34e-07    0.1/Mb  (relative = 0.36)  expected NS/S ratio = 5.0
         indel+null   3.36e-08    0.0/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.69e-07    0.4/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6371
            *CpG->T   4.75e-06    4.7/Mb  (relative = 3.15)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.24e-07    0.4/Mb  (relative = 0.28)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.2
           transver   7.71e-07    0.8/Mb  (relative = 0.51)  expected NS/S ratio = 5.0
         indel+null   1.34e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6373
            *CpG->T   5.20e-06    5.2/Mb  (relative = 4.74)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.22e-07    0.4/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   4.34e-07    0.4/Mb  (relative = 0.40)  expected NS/S ratio = 2.2
           transver   3.33e-07    0.3/Mb  (relative = 0.30)  expected NS/S ratio = 5.0
         indel+null   6.66e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6378
            *CpG->T   4.68e-06    4.7/Mb  (relative = 4.28)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.45e-07    0.5/Mb  (relative = 0.50)  expected NS/S ratio = 2.0
            *ApG->G   2.16e-07    0.2/Mb  (relative = 0.20)  expected NS/S ratio = 2.2
           transver   1.66e-07    0.2/Mb  (relative = 0.15)  expected NS/S ratio = 5.0
         indel+null   1.99e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.09e-06    1.1/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6384
            *CpG->T   5.34e-06    5.3/Mb  (relative = 3.99)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   2.96e-07    0.3/Mb  (relative = 0.22)  expected NS/S ratio = 2.0
            *ApG->G   8.73e-07    0.9/Mb  (relative = 0.65)  expected NS/S ratio = 2.2
           transver   5.69e-07    0.6/Mb  (relative = 0.42)  expected NS/S ratio = 5.0
         indel+null   1.00e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6385
            *CpG->T   2.40e-06    2.4/Mb  (relative = 3.41)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   1.70e-07    0.2/Mb  (relative = 0.24)  expected NS/S ratio = 2.0
            *ApG->G   4.38e-07    0.4/Mb  (relative = 0.62)  expected NS/S ratio = 2.1
           transver   3.02e-07    0.3/Mb  (relative = 0.43)  expected NS/S ratio = 5.0
         indel+null   6.72e-08    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.05e-07    0.7/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6494
            *CpG->T   5.37e-06    5.4/Mb  (relative = 3.33)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   4.25e-07    0.4/Mb  (relative = 0.26)  expected NS/S ratio = 2.0
            *ApG->G         00    0.0/Mb  (relative = 0.00)  expected NS/S ratio = 2.1
           transver   7.38e-07    0.7/Mb  (relative = 0.46)  expected NS/S ratio = 5.0
         indel+null   2.35e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-06    1.6/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

PRAD-G9-6496
            *CpG->T   3.62e-06    3.6/Mb  (relative = 2.34)  expected NS/S ratio = 2.1
*Np(A/C/T)->transit   5.96e-07    0.6/Mb  (relative = 0.38)  expected NS/S ratio = 2.0
            *ApG->G   2.19e-07    0.2/Mb  (relative = 0.14)  expected NS/S ratio = 2.1
           transver   6.40e-07    0.6/Mb  (relative = 0.41)  expected NS/S ratio = 5.0
         indel+null   2.02e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)  expected NS/S ratio = 3.5

Analyzing silent/nonsilent ratios
1000/18134 2000/18134 3000/18134 4000/18134 5000/18134 6000/18134 7000/18134 8000/18134 9000/18134 10000/18134 11000/18134 12000/18134 13000/18134 14000/18134 15000/18134 16000/18134 17000/18134 18000/18134 Done
estimate_nonsilent_passengers_from_silent

Running "classic" MutSig:
Scatter job 200: processing genes 18044 - 18134
Calculating significance of each gene.
Using projection method.
18044	ZNF799	1.311564e-02
18045	ZNF8	1
18046	ZNF80	1
18047	ZNF800	6.063629e-02
18048	ZNF804A	1
18049	ZNF804B	2.823102e-01
18050	ZNF805	1
18051	ZNF808	1
18052	ZNF81	1
18053	ZNF813	1.387887e-01
18054	ZNF814	6.003884e-05
18055	ZNF816A	1
18056	ZNF821	1
18057	ZNF823	1
18058	ZNF827	1.294900e-01
18059	ZNF828	1
18060	ZNF829	1
18061	ZNF83	1
18062	ZNF830	1
18063	ZNF831	1
18064	ZNF835	1
18065	ZNF836	1
18066	ZNF839	1
18067	ZNF841	1
18068	ZNF844	6.222796e-02
18069	ZNF845	1
18070	ZNF846	1
18071	ZNF85	1.661740e-01
18072	ZNF860	1
18073	ZNF862	1
18074	ZNF878	1
18075	ZNF880	1
18076	ZNF883	1
18077	ZNF90	1
18078	ZNF91	1
18079	ZNF92	1
18080	ZNF93	1
In gene ZNF98 the following bins exceed PROBCAP:
    PRAD-EJ-5496	categ 6	N = 1620    n = 1	mu =   1.66e-07
18081	ZNF98	1.148897e-05
18082	ZNF99	6.688154e-02
18083	ZNFX1	1.789177e-01
18084	ZNHIT1	1
18085	ZNHIT2	1
18086	ZNHIT3	1
18087	ZNHIT6	1
18088	ZNRD1	1
18089	ZNRF1	1
18090	ZNRF2	2.292615e-02
18091	ZNRF3	1
18092	ZNRF4	4.431763e-02
18093	ZP1	1
18094	ZP2	1
18095	ZP3	1
18096	ZP4	1
18097	ZPBP	7.571372e-02
18098	ZPBP2	6.017685e-02
18099	ZPLD1	1
18100	ZRANB1	1
18101	ZRANB2	1
18102	ZRANB3	1
18103	ZRSR2	1
18104	ZSCAN1	1
18105	ZSCAN10	1
18106	ZSCAN12	1
18107	ZSCAN16	1
18108	ZSCAN18	1
18109	ZSCAN2	1
18110	ZSCAN20	1
18111	ZSCAN21	1
18112	ZSCAN22	1
18113	ZSCAN23	7.519795e-03
18114	ZSCAN29	1
18115	ZSCAN4	1
18116	ZSCAN5A	1
18117	ZSCAN5B	1.382394e-01
18118	ZSWIM1	1
18119	ZSWIM2	9.992573e-02
18120	ZSWIM3	1
18121	ZSWIM4	1
18122	ZSWIM5	1
18123	ZSWIM7	1
18124	ZUFSP	1
18125	ZW10	1
18126	ZWILCH	1
18127	ZWINT	1
18128	ZXDA	1
18129	ZXDB	1
18130	ZXDC	1
18131	ZYG11B	1
18132	ZYX	1
18133	ZZEF1	5.851500e-01
In gene ZZZ3 the following bins exceed PROBCAP:
    PRAD-EJ-5519	categ 6	N = 2756    n = 1	mu =   6.75e-07
18134	ZZZ3	2.178600e-01
Done

Running MutSig 2:
Scatter job 200: processing genes 18044 - 18134
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ZNF814
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.595841e-01	ci left: 5.234307e-02	ci right 6.151717e-02	k: 568	n:10000
Cons ci ratio: 4.618837e-03	ci left: 9.839328e-01	ci right 9.885776e-01	k: 9864	n:10000
KS ci ratio: 9.791669e-01	ci left: 8.397740e-04	ci right 2.472817e-03	k: 15	n:10000
ZNF814   10000 perm   2 sec   (4794 perm/sec)   p_kst 1.500000e-03   p_cons 9.864000e-01   p_joint 5.680000e-02

Joint ci ratio: 1.678361e-01	ci left: 2.431805e-02	ci right 2.882102e-02	k: 530	n:20000
Cons ci ratio: 3.223855e-03	ci left: 9.850146e-01	ci right 9.882416e-01	k: 19734	n:20000
KS ci ratio: 7.273797e-01	ci left: 9.304852e-04	ci right 2.022759e-03	k: 28	n:20000
ZNF814   20000 perm   6 sec   (3220 perm/sec)   p_kst 1.400000e-03   p_cons 9.867000e-01   p_joint 2.650000e-02

Joint ci ratio: 1.786206e-01	ci left: 1.438741e-02	ci right 1.724081e-02	k: 473	n:30000
Cons ci ratio: 2.613997e-03	ci left: 9.855135e-01	ci right 9.881243e-01	k: 29606	n:30000
KS ci ratio: 5.905189e-01	ci left: 1.037499e-03	ci right 1.930210e-03	k: 43	n:30000
ZNF814   30000 perm   9 sec   (3518 perm/sec)   p_kst 1.433333e-03   p_cons 9.868667e-01   p_joint 1.576667e-02

Joint ci ratio: 1.303773e-01	ci left: 2.065741e-02	ci right 2.356254e-02	k: 883	n:40000
Cons ci ratio: 2.320515e-03	ci left: 9.850083e-01	ci right 9.873203e-01	k: 39448	n:40000
KS ci ratio: 4.934784e-01	ci left: 1.188576e-03	ci right 1.986596e-03	k: 62	n:40000
ZNF814   40000 perm   11 sec   (3631 perm/sec)   p_kst 1.550000e-03   p_cons 9.862000e-01   p_joint 2.207500e-02

Joint ci ratio: 1.323585e-01	ci left: 1.609782e-02	ci right 1.839872e-02	k: 861	n:50000
Cons ci ratio: 2.039873e-03	ci left: 9.856157e-01	ci right 9.876473e-01	k: 49333	n:50000
KS ci ratio: 4.463769e-01	ci left: 1.197768e-03	ci right 1.902143e-03	k: 76	n:50000
ZNF814   50000 perm   14 sec   (3691 perm/sec)   p_kst 1.520000e-03   p_cons 9.866600e-01   p_joint 1.722000e-02

Joint ci ratio: 1.445001e-01	ci left: 1.124050e-02	ci right 1.300716e-02	k: 726	n:60000
Cons ci ratio: 1.946752e-03	ci left: 9.844425e-01	ci right 9.863768e-01	k: 59126	n:60000
KS ci ratio: 4.083714e-01	ci left: 1.221296e-03	ci right 1.861809e-03	k: 91	n:60000
ZNF814   60000 perm   16 sec   (3729 perm/sec)   p_kst 1.516667e-03   p_cons 9.854333e-01   p_joint 1.210000e-02

Joint ci ratio: 1.366787e-01	ci left: 1.081993e-02	ci right 1.242094e-02	k: 812	n:70000
Cons ci ratio: 1.805188e-03	ci left: 9.844692e-01	ci right 9.862617e-01	k: 68977	n:70000
KS ci ratio: 3.804530e-01	ci left: 1.227010e-03	ci right 1.815555e-03	k: 105	n:70000
ZNF814   70000 perm   19 sec   (3721 perm/sec)   p_kst 1.500000e-03   p_cons 9.853857e-01   p_joint 1.160000e-02

Joint ci ratio: 1.303690e-01	ci left: 1.044599e-02	ci right 1.191478e-02	k: 893	n:80000
Cons ci ratio: 1.682529e-03	ci left: 9.846347e-01	ci right 9.863048e-01	k: 78839	n:80000
KS ci ratio: 3.503393e-01	ci left: 1.289370e-03	ci right 1.847778e-03	k: 124	n:80000
ZNF814   80000 perm   23 sec   (3444 perm/sec)   p_kst 1.550000e-03   p_cons 9.854875e-01   p_joint 1.116250e-02

Joint ci ratio: 1.111886e-01	ci left: 1.286426e-02	ci right 1.438955e-02	k: 1225	n:90000
Cons ci ratio: 1.574416e-03	ci left: 9.849029e-01	ci right 9.864655e-01	k: 88713	n:90000
KS ci ratio: 3.275445e-01	ci left: 1.329107e-03	ci right 1.859405e-03	k: 142	n:90000
ZNF814   90000 perm   26 sec   (3458 perm/sec)   p_kst 1.577778e-03   p_cons 9.857000e-01   p_joint 1.361111e-02

Joint ci ratio: 1.531353e-01	ci left: 6.011289e-03	ci right 7.017656e-03	k: 650	n:100000
Cons ci ratio: 1.410372e-03	ci left: 9.865148e-01	ci right 9.879168e-01	k: 98723	n:100000
KS ci ratio: 3.096536e-01	ci left: 1.352615e-03	ci right 1.857001e-03	k: 159	n:100000
ZNF814   100000 perm   29 sec   (3464 perm/sec)   p_kst 1.590000e-03   p_cons 9.872300e-01   p_joint 6.500000e-03

Joint ci ratio: 1.544995e-01	ci left: 5.368517e-03	ci right 6.276018e-03	k: 639	n:110000
Cons ci ratio: 1.339498e-03	ci left: 9.866487e-01	ci right 9.879800e-01	k: 108606	n:110000
KS ci ratio: 2.944068e-01	ci left: 1.372494e-03	ci right 1.854395e-03	k: 176	n:110000
ZNF814   110000 perm   32 sec   (3386 perm/sec)   p_kst 1.600000e-03   p_cons 9.873273e-01   p_joint 5.809091e-03

Joint ci ratio: 1.532190e-01	ci left: 5.009206e-03	ci right 5.848301e-03	k: 650	n:120000
Cons ci ratio: 1.281271e-03	ci left: 9.867016e-01	ci right 9.879747e-01	k: 118482	n:120000
KS ci ratio: 2.797701e-01	ci left: 1.405063e-03	ci right 1.869555e-03	k: 195	n:120000
ZNF814   120000 perm   36 sec   (3355 perm/sec)   p_kst 1.625000e-03   p_cons 9.873500e-01   p_joint 5.416667e-03

Joint ci ratio: 1.486183e-01	ci left: 4.927343e-03	ci right 5.725737e-03	k: 691	n:130000
Cons ci ratio: 1.232679e-03	ci left: 9.866922e-01	ci right 9.879167e-01	k: 128351	n:130000
KS ci ratio: 2.683728e-01	ci left: 1.418769e-03	ci right 1.865472e-03	k: 212	n:130000
ZNF814   130000 perm   40 sec   (3255 perm/sec)   p_kst 1.630769e-03   p_cons 9.873154e-01   p_joint 5.315385e-03

Joint ci ratio: 1.213956e-01	ci left: 6.943861e-03	ci right 7.848150e-03	k: 1034	n:140000
Cons ci ratio: 1.188205e-03	ci left: 9.867070e-01	ci right 9.878870e-01	k: 138223	n:140000
KS ci ratio: 2.565930e-01	ci left: 1.450894e-03	ci right 1.884451e-03	k: 232	n:140000
ZNF814   140000 perm   44 sec   (3151 perm/sec)   p_kst 1.657143e-03   p_cons 9.873071e-01   p_joint 7.385714e-03

Joint ci ratio: 1.223819e-01	ci left: 6.377408e-03	ci right 7.215161e-03	k: 1018	n:150000
Cons ci ratio: 1.154309e-03	ci left: 9.865842e-01	ci right 9.877302e-01	k: 148075	n:150000
KS ci ratio: 2.482128e-01	ci left: 1.454088e-03	ci right 1.872219e-03	k: 248	n:150000
ZNF814   150000 perm   48 sec   (3152 perm/sec)   p_kst 1.653333e-03   p_cons 9.871667e-01   p_joint 6.786667e-03

Joint ci ratio: 1.016310e-01	ci left: 8.744062e-03	ci right 9.686351e-03	k: 1473	n:160000
Cons ci ratio: 1.118647e-03	ci left: 9.865797e-01	ci right 9.876900e-01	k: 157943	n:160000
KS ci ratio: 2.406034e-01	ci left: 1.457085e-03	ci right 1.861317e-03	k: 264	n:160000
ZNF814   160000 perm   51 sec   (3146 perm/sec)   p_kst 1.650000e-03   p_cons 9.871437e-01   p_joint 9.206250e-03

Joint ci ratio: 1.004290e-01	ci left: 8.436051e-03	ci right 9.333759e-03	k: 1509	n:170000
Cons ci ratio: 1.077017e-03	ci left: 9.867924e-01	ci right 9.878615e-01	k: 167847	n:170000
KS ci ratio: 2.320054e-01	ci left: 1.482060e-03	ci right 1.876423e-03	k: 284	n:170000
ZNF814   170000 perm   54 sec   (3139 perm/sec)   p_kst 1.670588e-03   p_cons 9.873353e-01   p_joint 8.876471e-03

Joint ci ratio: 9.360075e-02	ci left: 9.198090e-03	ci right 1.010670e-02	k: 1736	n:180000
Cons ci ratio: 1.099624e-03	ci left: 9.854862e-01	ci right 9.865759e-01	k: 177487	n:180000
KS ci ratio: 2.242677e-01	ci left: 1.504488e-03	ci right 1.889623e-03	k: 304	n:180000
ZNF814   180000 perm   58 sec   (3122 perm/sec)   p_kst 1.688889e-03   p_cons 9.860389e-01   p_joint 9.644444e-03

Joint ci ratio: 9.164843e-02	ci left: 9.099551e-03	ci right 9.978669e-03	k: 1811	n:190000
Cons ci ratio: 1.067498e-03	ci left: 9.855742e-01	ci right 9.866320e-01	k: 187361	n:190000
KS ci ratio: 2.159288e-01	ci left: 1.544663e-03	ci right 1.923431e-03	k: 328	n:190000
ZNF814   190000 perm   61 sec   (3107 perm/sec)   p_kst 1.726316e-03   p_cons 9.861105e-01   p_joint 9.531579e-03

Joint ci ratio: 9.010295e-02	ci left: 8.952384e-03	ci right 9.801928e-03	k: 1874	n:200000
Cons ci ratio: 1.041617e-03	ci left: 9.855569e-01	ci right 9.865889e-01	k: 197216	n:200000
KS ci ratio: 2.064156e-01	ci left: 1.614242e-03	ci right 1.990433e-03	k: 359	n:200000
ZNF814   200000 perm   65 sec   (3086 perm/sec)   p_kst 1.795000e-03   p_cons 9.860800e-01   p_joint 9.370000e-03

Joint ci ratio: 8.905124e-02	ci left: 8.735521e-03	ci right 9.554305e-03	k: 1919	n:210000
Cons ci ratio: 1.017176e-03	ci left: 9.855513e-01	ci right 9.865590e-01	k: 207073	n:210000
KS ci ratio: 2.030620e-01	ci left: 1.591585e-03	ci right 1.955722e-03	k: 371	n:210000
ZNF814   210000 perm   69 sec   (3066 perm/sec)   p_kst 1.766667e-03   p_cons 9.860619e-01   p_joint 9.138095e-03

Joint ci ratio: 8.298429e-02	ci left: 9.624037e-03	ci right 1.046167e-02	k: 2208	n:220000
Cons ci ratio: 9.961811e-04	ci left: 9.854957e-01	ci right 9.864823e-01	k: 216919	n:220000
KS ci ratio: 1.978130e-01	ci left: 1.605588e-03	ci right 1.962289e-03	k: 391	n:220000
ZNF814   220000 perm   72 sec   (3044 perm/sec)   p_kst 1.777273e-03   p_cons 9.859955e-01   p_joint 1.003636e-02

Joint ci ratio: 8.216174e-02	ci left: 9.397167e-03	ci right 1.020656e-02	k: 2253	n:230000
Cons ci ratio: 9.730434e-04	ci left: 9.855424e-01	ci right 9.865061e-01	k: 226787	n:230000
KS ci ratio: 1.941348e-01	ci left: 1.597797e-03	ci right 1.945386e-03	k: 406	n:230000
ZNF814   230000 perm   76 sec   (3022 perm/sec)   p_kst 1.765217e-03   p_cons 9.860304e-01   p_joint 9.795652e-03

Joint ci ratio: 7.606155e-02	ci left: 1.052930e-02	ci right 1.136590e-02	k: 2626	n:240000
Cons ci ratio: 9.508643e-04	ci left: 9.856024e-01	ci right 9.865441e-01	k: 236659	n:240000
KS ci ratio: 1.888694e-01	ci left: 1.622464e-03	ci right 1.964748e-03	k: 429	n:240000
ZNF814   240000 perm   80 sec   (2998 perm/sec)   p_kst 1.787500e-03   p_cons 9.860792e-01   p_joint 1.094167e-02

Joint ci ratio: 7.632838e-02	ci left: 1.004133e-02	ci right 1.084208e-02	k: 2609	n:250000
Cons ci ratio: 9.316194e-04	ci left: 9.856131e-01	ci right 9.865356e-01	k: 246520	n:250000
KS ci ratio: 1.860794e-01	ci left: 1.607123e-03	ci right 1.940597e-03	k: 442	n:250000
ZNF814   250000 perm   84 sec   (2974 perm/sec)   p_kst 1.768000e-03   p_cons 9.860800e-01   p_joint 1.043600e-02

Joint ci ratio: 7.649203e-02	ci left: 9.617319e-03	ci right 1.038597e-02	k: 2599	n:260000
Cons ci ratio: 9.159257e-04	ci left: 9.855488e-01	ci right 9.864557e-01	k: 256362	n:260000
KS ci ratio: 1.822125e-01	ci left: 1.615020e-03	ci right 1.942400e-03	k: 461	n:260000
ZNF814   260000 perm   88 sec   (2949 perm/sec)   p_kst 1.773077e-03   p_cons 9.860077e-01   p_joint 9.996154e-03

Joint ci ratio: 7.667027e-02	ci left: 9.221090e-03	ci right 9.959865e-03	k: 2588	n:270000
Cons ci ratio: 8.979644e-04	ci left: 9.855836e-01	ci right 9.864726e-01	k: 266229	n:270000
KS ci ratio: 1.791375e-01	ci left: 1.611784e-03	ci right 1.932396e-03	k: 477	n:270000
ZNF814   270000 perm   92 sec   (2923 perm/sec)   p_kst 1.766667e-03   p_cons 9.860333e-01   p_joint 9.585185e-03

Joint ci ratio: 7.855797e-02	ci left: 8.467879e-03	ci right 9.163774e-03	k: 2467	n:280000
Cons ci ratio: 8.823890e-04	ci left: 9.855725e-01	ci right 9.864460e-01	k: 276084	n:280000
KS ci ratio: 1.758569e-01	ci left: 1.615650e-03	ci right 1.930521e-03	k: 495	n:280000
ZNF814   280000 perm   97 sec   (2900 perm/sec)   p_kst 1.767857e-03   p_cons 9.860143e-01   p_joint 8.810714e-03

Joint ci ratio: 7.723956e-02	ci left: 8.463276e-03	ci right 9.146595e-03	k: 2552	n:290000
Cons ci ratio: 8.683534e-04	ci left: 9.855378e-01	ci right 9.863973e-01	k: 285932	n:290000
KS ci ratio: 1.730879e-01	ci left: 1.612701e-03	ci right 1.921531e-03	k: 511	n:290000
ZNF814   290000 perm   101 sec   (2875 perm/sec)   p_kst 1.762069e-03   p_cons 9.859724e-01   p_joint 8.800000e-03

Joint ci ratio: 7.626295e-02	ci left: 8.396933e-03	ci right 9.065942e-03	k: 2618	n:300000
Cons ci ratio: 8.536237e-04	ci left: 9.855495e-01	ci right 9.863944e-01	k: 295793	n:300000
KS ci ratio: 1.698025e-01	ci left: 1.622751e-03	ci right 1.927003e-03	k: 531	n:300000
ZNF814   300000 perm   105 sec   (2850 perm/sec)   p_kst 1.770000e-03   p_cons 9.859767e-01   p_joint 8.726667e-03

Joint ci ratio: 7.557839e-02	ci left: 8.277944e-03	ci right 8.931292e-03	k: 2666	n:310000
Cons ci ratio: 8.388349e-04	ci left: 9.855868e-01	ci right 9.864170e-01	k: 305662	n:310000
KS ci ratio: 1.673058e-01	ci left: 1.619839e-03	ci right 1.918630e-03	k: 547	n:310000
ZNF814   310000 perm   110 sec   (2824 perm/sec)   p_kst 1.764516e-03   p_cons 9.860065e-01   p_joint 8.600000e-03

Joint ci ratio: 7.568887e-02	ci left: 7.997753e-03	ci right 8.629949e-03	k: 2659	n:320000
Cons ci ratio: 8.254404e-04	ci left: 9.855996e-01	ci right 9.864166e-01	k: 315524	n:320000
KS ci ratio: 1.640442e-01	ci left: 1.635120e-03	ci right 1.930270e-03	k: 569	n:320000
ZNF814   320000 perm   114 sec   (2799 perm/sec)   p_kst 1.778125e-03   p_cons 9.860125e-01   p_joint 8.309375e-03

Joint ci ratio: 7.574155e-02	ci left: 7.746441e-03	ci right 8.359215e-03	k: 2656	n:330000
Cons ci ratio: 8.128460e-04	ci left: 9.856056e-01	ci right 9.864101e-01	k: 325384	n:330000
KS ci ratio: 1.616515e-01	ci left: 1.634987e-03	ci right 1.925389e-03	k: 586	n:330000
ZNF814   330000 perm   119 sec   (2775 perm/sec)   p_kst 1.775758e-03   p_cons 9.860121e-01   p_joint 8.048485e-03

Joint ci ratio: 7.525265e-02	ci left: 7.619583e-03	ci right 8.218261e-03	k: 2691	n:340000
Cons ci ratio: 7.979894e-04	ci left: 9.857098e-01	ci right 9.864996e-01	k: 335277	n:340000
KS ci ratio: 1.589656e-01	ci left: 1.643363e-03	ci right 1.929941e-03	k: 606	n:340000
ZNF814   340000 perm   124 sec   (2749 perm/sec)   p_kst 1.782353e-03   p_cons 9.861088e-01   p_joint 7.914706e-03

Joint ci ratio: 7.650246e-02	ci left: 7.160764e-03	ci right 7.733151e-03	k: 2605	n:350000
Cons ci ratio: 7.870858e-04	ci left: 9.856951e-01	ci right 9.864740e-01	k: 345131	n:350000
KS ci ratio: 1.574185e-01	ci left: 1.629338e-03	ci right 1.910443e-03	k: 618	n:350000
ZNF814   350000 perm   128 sec   (2724 perm/sec)   p_kst 1.765714e-03   p_cons 9.860886e-01   p_joint 7.442857e-03

Joint ci ratio: 6.481507e-02	ci left: 9.732199e-03	ci right 1.038683e-02	k: 3620	n:360000
Cons ci ratio: 7.752013e-04	ci left: 9.857319e-01	ci right 9.864991e-01	k: 355003	n:360000
KS ci ratio: 1.444435e-01	ci left: 1.894171e-03	ci right 2.191713e-03	k: 734	n:360000
ZNF814   360000 perm   134 sec   (2692 perm/sec)   p_kst 2.038889e-03   p_cons 9.861194e-01   p_joint 1.005556e-02

Joint ci ratio: 6.704725e-02	ci left: 8.847022e-03	ci right 9.463405e-03	k: 3386	n:370000
Cons ci ratio: 7.645911e-04	ci left: 9.857395e-01	ci right 9.864961e-01	k: 364865	n:370000
KS ci ratio: 1.426123e-01	ci left: 1.892485e-03	ci right 2.185672e-03	k: 753	n:370000
ZNF814   370000 perm   139 sec   (2666 perm/sec)   p_kst 2.035135e-03   p_cons 9.861216e-01   p_joint 9.151351e-03

Joint ci ratio: 6.623166e-02	ci left: 8.831572e-03	ci right 9.439106e-03	k: 3470	n:380000
Cons ci ratio: 7.554197e-04	ci left: 9.857094e-01	ci right 9.864569e-01	k: 374713	n:380000
KS ci ratio: 1.405759e-01	ci left: 1.898527e-03	ci right 2.188098e-03	k: 775	n:380000
ZNF814   380000 perm   144 sec   (2642 perm/sec)   p_kst 2.039474e-03   p_cons 9.860868e-01   p_joint 9.131579e-03

Joint ci ratio: 5.904068e-02	ci left: 1.084681e-02	ci right 1.150920e-02	k: 4358	n:390000
Cons ci ratio: 7.452430e-04	ci left: 9.857302e-01	ci right 9.864676e-01	k: 384580	n:390000
KS ci ratio: 1.392376e-01	ci left: 1.886961e-03	ci right 2.171801e-03	k: 790	n:390000
ZNF814   390000 perm   149 sec   (2617 perm/sec)   p_kst 2.025641e-03   p_cons 9.861026e-01   p_joint 1.117436e-02

Joint ci ratio: 5.868263e-02	ci left: 1.070863e-02	ci right 1.135848e-02	k: 4412	n:400000
Cons ci ratio: 7.376114e-04	ci left: 9.856691e-01	ci right 9.863988e-01	k: 394415	n:400000
KS ci ratio: 1.375951e-01	ci left: 1.885642e-03	ci right 2.166650e-03	k: 809	n:400000
ZNF814   400000 perm   154 sec   (2592 perm/sec)   p_kst 2.022500e-03   p_cons 9.860375e-01   p_joint 1.103000e-02

Joint ci ratio: 5.896815e-02	ci left: 1.034886e-02	ci right 1.098004e-02	k: 4371	n:410000
Cons ci ratio: 7.280670e-04	ci left: 9.856925e-01	ci right 9.864128e-01	k: 404283	n:410000
KS ci ratio: 1.361740e-01	ci left: 1.879694e-03	ci right 2.156688e-03	k: 826	n:410000
ZNF814   410000 perm   160 sec   (2570 perm/sec)   p_kst 2.014634e-03   p_cons 9.860561e-01   p_joint 1.066098e-02

Joint ci ratio: 5.671192e-02	ci left: 1.092852e-02	ci right 1.156872e-02	k: 4723	n:420000
Cons ci ratio: 7.210603e-04	ci left: 9.856305e-01	ci right 9.863438e-01	k: 414116	n:420000
KS ci ratio: 1.346364e-01	ci left: 1.878645e-03	ci right 2.152108e-03	k: 845	n:420000
ZNF814   420000 perm   165 sec   (2547 perm/sec)   p_kst 2.011905e-03   p_cons 9.859905e-01   p_joint 1.124524e-02

Joint ci ratio: 5.635865e-02	ci left: 1.081192e-02	ci right 1.144121e-02	k: 4783	n:430000
Cons ci ratio: 7.126795e-04	ci left: 9.856326e-01	ci right 9.863376e-01	k: 423975	n:430000
KS ci ratio: 1.327658e-01	ci left: 1.888903e-03	ci right 2.159738e-03	k: 869	n:430000
ZNF814   430000 perm   170 sec   (2524 perm/sec)   p_kst 2.020930e-03   p_cons 9.859884e-01   p_joint 1.112326e-02

Joint ci ratio: 5.734955e-02	ci left: 1.020539e-02	ci right 1.081017e-02	k: 4622	n:440000
Cons ci ratio: 7.053371e-04	ci left: 9.856048e-01	ci right 9.863024e-01	k: 433821	n:440000
KS ci ratio: 1.308245e-01	ci left: 1.903117e-03	ci right 2.171690e-03	k: 895	n:440000
ZNF814   440000 perm   176 sec   (2501 perm/sec)   p_kst 2.034091e-03   p_cons 9.859568e-01   p_joint 1.050455e-02

Joint ci ratio: 5.691635e-02	ci left: 1.013412e-02	ci right 1.072999e-02	k: 4693	n:450000
Cons ci ratio: 6.984931e-04	ci left: 9.855670e-01	ci right 9.862578e-01	k: 443662	n:450000
KS ci ratio: 1.296012e-01	ci left: 1.897372e-03	ci right 2.162438e-03	k: 912	n:450000
ZNF814   450000 perm   182 sec   (2479 perm/sec)   p_kst 2.026667e-03   p_cons 9.859156e-01   p_joint 1.042889e-02

Joint ci ratio: 5.456415e-02	ci left: 1.079280e-02	ci right 1.140034e-02	k: 5103	n:460000
Cons ci ratio: 6.922169e-04	ci left: 9.855155e-01	ci right 9.862001e-01	k: 453496	n:460000
KS ci ratio: 1.280672e-01	ci left: 1.902410e-03	ci right 2.164795e-03	k: 934	n:460000
ZNF814   460000 perm   187 sec   (2454 perm/sec)   p_kst 2.030435e-03   p_cons 9.858609e-01   p_joint 1.109348e-02

Joint ci ratio: 5.144616e-02	ci left: 1.188810e-02	ci right 1.251793e-02	k: 5734	n:470000
Cons ci ratio: 6.850530e-04	ci left: 9.855093e-01	ci right 9.861868e-01	k: 463350	n:470000
KS ci ratio: 1.270529e-01	ci left: 1.892829e-03	ci right 2.151669e-03	k: 949	n:470000
ZNF814   470000 perm   193 sec   (2434 perm/sec)   p_kst 2.019149e-03   p_cons 9.858511e-01   p_joint 1.220000e-02

Joint ci ratio: 5.186624e-02	ci left: 1.145529e-02	ci right 1.206729e-02	k: 5644	n:480000
Cons ci ratio: 6.783091e-04	ci left: 9.854950e-01	ci right 9.861658e-01	k: 473200	n:480000
KS ci ratio: 1.256714e-01	ci left: 1.895762e-03	ci right 2.151975e-03	k: 970	n:480000
ZNF814   480000 perm   199 sec   (2414 perm/sec)   p_kst 2.020833e-03   p_cons 9.858333e-01   p_joint 1.175833e-02

Joint ci ratio: 5.141379e-02	ci left: 1.142295e-02	ci right 1.202774e-02	k: 5744	n:490000
Cons ci ratio: 6.710239e-04	ci left: 9.855123e-01	ci right 9.861758e-01	k: 483065	n:490000
KS ci ratio: 1.242712e-01	ci left: 1.900568e-03	ci right 2.154357e-03	k: 992	n:490000
ZNF814   490000 perm   205 sec   (2393 perm/sec)   p_kst 2.024490e-03   p_cons 9.858469e-01   p_joint 1.172245e-02

Joint ci ratio: 4.725840e-02	ci left: 1.325311e-02	ci right 1.389655e-02	k: 6786	n:500000
Cons ci ratio: 6.650624e-04	ci left: 9.854824e-01	ci right 9.861400e-01	k: 492907	n:500000
KS ci ratio: 1.235897e-01	ci left: 1.883874e-03	ci right 2.133953e-03	k: 1003	n:500000
ZNF814   500000 perm   211 sec   (2373 perm/sec)   p_kst 2.006000e-03   p_cons 9.858140e-01   p_joint 1.357200e-02

Joint ci ratio: 4.838619e-02	ci left: 1.239835e-02	ci right 1.301505e-02	k: 6479	n:510000
Cons ci ratio: 6.594381e-04	ci left: 9.854458e-01	ci right 9.860977e-01	k: 502745	n:510000
KS ci ratio: 1.224968e-01	ci left: 1.881142e-03	ci right 2.128491e-03	k: 1021	n:510000
ZNF814   510000 perm   217 sec   (2352 perm/sec)   p_kst 2.001961e-03   p_cons 9.857745e-01   p_joint 1.270392e-02

Joint ci ratio: 4.862062e-02	ci left: 1.204588e-02	ci right 1.264804e-02	k: 6419	n:520000
Cons ci ratio: 6.521583e-04	ci left: 9.854884e-01	ci right 9.861331e-01	k: 512623	n:520000
KS ci ratio: 1.211409e-01	ci left: 1.887850e-03	ci right 2.133136e-03	k: 1044	n:520000
ZNF814   520000 perm   223 sec   (2331 perm/sec)   p_kst 2.007692e-03   p_cons 9.858135e-01   p_joint 1.234423e-02

Joint ci ratio: 4.864170e-02	ci left: 1.181111e-02	ci right 1.240179e-02	k: 6415	n:530000
Cons ci ratio: 6.458073e-04	ci left: 9.854988e-01	ci right 9.861373e-01	k: 522485	n:530000
KS ci ratio: 1.196607e-01	ci left: 1.899810e-03	ci right 2.143421e-03	k: 1070	n:530000
ZNF814   530000 perm   230 sec   (2309 perm/sec)   p_kst 2.018868e-03   p_cons 9.858208e-01   p_joint 1.210377e-02

Joint ci ratio: 4.850967e-02	ci left: 1.165822e-02	ci right 1.223963e-02	k: 6451	n:540000
Cons ci ratio: 6.396382e-04	ci left: 9.855090e-01	ci right 9.861414e-01	k: 532347	n:540000
KS ci ratio: 1.185045e-01	ci left: 1.902359e-03	ci right 2.143774e-03	k: 1091	n:540000
ZNF814   540000 perm   236 sec   (2290 perm/sec)   p_kst 2.020370e-03   p_cons 9.858278e-01   p_joint 1.194630e-02

Joint ci ratio: 4.891549e-02	ci left: 1.125941e-02	ci right 1.182576e-02	k: 6347	n:550000
Cons ci ratio: 6.339311e-04	ci left: 9.855059e-01	ci right 9.861326e-01	k: 542202	n:550000
KS ci ratio: 1.172229e-01	ci left: 1.910121e-03	ci right 2.149718e-03	k: 1115	n:550000
ZNF814   550000 perm   242 sec   (2271 perm/sec)   p_kst 2.027273e-03   p_cons 9.858218e-01   p_joint 1.154000e-02

Joint ci ratio: 4.859641e-02	ci left: 1.120651e-02	ci right 1.176642e-02	k: 6431	n:560000
Cons ci ratio: 6.282134e-04	ci left: 9.855102e-01	ci right 9.861312e-01	k: 552061	n:560000
KS ci ratio: 1.165468e-01	ci left: 1.898547e-03	ci right 2.135224e-03	k: 1128	n:560000
ZNF814   560000 perm   249 sec   (2251 perm/sec)   p_kst 2.014286e-03   p_cons 9.858232e-01   p_joint 1.148393e-02

Joint ci ratio: 4.727717e-02	ci left: 1.163571e-02	ci right 1.220085e-02	k: 6792	n:570000
Cons ci ratio: 6.227650e-04	ci left: 9.855090e-01	ci right 9.861246e-01	k: 561917	n:570000
KS ci ratio: 1.155785e-01	ci left: 1.897604e-03	ci right 2.132065e-03	k: 1147	n:570000
ZNF814   570000 perm   255 sec   (2233 perm/sec)   p_kst 2.012281e-03   p_cons 9.858193e-01   p_joint 1.191579e-02

Joint ci ratio: 4.539561e-02	ci left: 1.240487e-02	ci right 1.298277e-02	k: 7361	n:580000
Cons ci ratio: 6.175700e-04	ci left: 9.855027e-01	ci right 9.861132e-01	k: 571770	n:580000
KS ci ratio: 1.146339e-01	ci left: 1.896702e-03	ci right 2.129006e-03	k: 1166	n:580000
ZNF814   580000 perm   262 sec   (2215 perm/sec)   p_kst 2.010345e-03   p_cons 9.858103e-01   p_joint 1.269138e-02

Joint ci ratio: 4.511289e-02	ci left: 1.235046e-02	ci right 1.292214e-02	k: 7454	n:590000
Cons ci ratio: 6.122801e-04	ci left: 9.855068e-01	ci right 9.861121e-01	k: 581629	n:590000
KS ci ratio: 1.132347e-01	ci left: 1.912308e-03	ci right 2.143473e-03	k: 1195	n:590000
ZNF814   590000 perm   269 sec   (2196 perm/sec)   p_kst 2.025424e-03   p_cons 9.858119e-01   p_joint 1.263390e-02

Joint ci ratio: 4.506875e-02	ci left: 1.217096e-02	ci right 1.273377e-02	k: 7470	n:600000
Cons ci ratio: 6.069068e-04	ci left: 9.855210e-01	ci right 9.861209e-01	k: 591494	n:600000
KS ci ratio: 1.123923e-01	ci left: 1.909589e-03	ci right 2.138595e-03	k: 1213	n:600000
ZNF814   600000 perm   276 sec   (2177 perm/sec)   p_kst 2.021667e-03   p_cons 9.858233e-01   p_joint 1.245000e-02

Joint ci ratio: 4.553849e-02	ci left: 1.172825e-02	ci right 1.227639e-02	k: 7320	n:610000
Cons ci ratio: 6.016722e-04	ci left: 9.855347e-01	ci right 9.861295e-01	k: 601359	n:610000
KS ci ratio: 1.112522e-01	ci left: 1.918122e-03	ci right 2.145665e-03	k: 1238	n:610000
ZNF814   610000 perm   283 sec   (2159 perm/sec)   p_kst 2.029508e-03   p_cons 9.858344e-01   p_joint 1.200000e-02

Joint ci ratio: 4.527770e-02	ci left: 1.167462e-02	ci right 1.221705e-02	k: 7405	n:620000
Cons ci ratio: 5.973972e-04	ci left: 9.855089e-01	ci right 9.860994e-01	k: 611200	n:620000
KS ci ratio: 1.104970e-01	ci left: 1.913843e-03	ci right 2.139237e-03	k: 1255	n:620000
ZNF814   620000 perm   290 sec   (2141 perm/sec)   p_kst 2.024194e-03   p_cons 9.858065e-01   p_joint 1.194355e-02

Joint ci ratio: 4.506702e-02	ci left: 1.159916e-02	ci right 1.213550e-02	k: 7475	n:630000
Cons ci ratio: 5.924033e-04	ci left: 9.855224e-01	ci right 9.861080e-01	k: 621065	n:630000
KS ci ratio: 1.099736e-01	ci left: 1.901987e-03	ci right 2.124855e-03	k: 1267	n:630000
ZNF814   630000 perm   297 sec   (2124 perm/sec)   p_kst 2.011111e-03   p_cons 9.858175e-01   p_joint 1.186508e-02

Joint ci ratio: 4.384442e-02	ci left: 1.206539e-02	ci right 1.260778e-02	k: 7894	n:640000
Cons ci ratio: 5.883530e-04	ci left: 9.854961e-01	ci right 9.860776e-01	k: 630905	n:640000
KS ci ratio: 1.089894e-01	ci left: 1.907222e-03	ci right 2.128575e-03	k: 1290	n:640000
ZNF814   640000 perm   304 sec   (2108 perm/sec)   p_kst 2.015625e-03   p_cons 9.857891e-01   p_joint 1.233437e-02

Joint ci ratio: 4.376174e-02	ci left: 1.192692e-02	ci right 1.246205e-02	k: 7925	n:650000
Cons ci ratio: 5.832926e-04	ci left: 9.855234e-01	ci right 9.860999e-01	k: 640779	n:650000
KS ci ratio: 1.079899e-01	ci left: 1.913802e-03	ci right 2.133751e-03	k: 1314	n:650000
ZNF814   650000 perm   311 sec   (2092 perm/sec)   p_kst 2.021538e-03   p_cons 9.858138e-01   p_joint 1.219231e-02

Joint ci ratio: 4.383586e-02	ci left: 1.170872e-02	ci right 1.223497e-02	k: 7900	n:660000
Cons ci ratio: 5.777310e-04	ci left: 9.855805e-01	ci right 9.861516e-01	k: 650673	n:660000
KS ci ratio: 1.072585e-01	ci left: 1.911343e-03	ci right 2.129429e-03	k: 1332	n:660000
ZNF814   660000 perm   318 sec   (2074 perm/sec)   p_kst 2.018182e-03   p_cons 9.858682e-01   p_joint 1.196970e-02

Joint ci ratio: 4.448233e-02	ci left: 1.120326e-02	ci right 1.171441e-02	k: 7676	n:670000
Cons ci ratio: 5.727171e-04	ci left: 9.856163e-01	ci right 9.861824e-01	k: 660554	n:670000
KS ci ratio: 1.066605e-01	ci left: 1.904604e-03	ci right 2.120633e-03	k: 1347	n:670000
ZNF814   670000 perm   326 sec   (2054 perm/sec)   p_kst 2.010448e-03   p_cons 9.859015e-01   p_joint 1.145672e-02

Joint ci ratio: 4.443930e-02	ci left: 1.106176e-02	ci right 1.156595e-02	k: 7692	n:680000
Cons ci ratio: 5.684603e-04	ci left: 9.856199e-01	ci right 9.861818e-01	k: 670414	n:680000
KS ci ratio: 1.054923e-01	ci left: 1.919543e-03	ci right 2.134734e-03	k: 1377	n:680000
ZNF814   680000 perm   334 sec   (2037 perm/sec)   p_kst 2.025000e-03   p_cons 9.859029e-01   p_joint 1.131176e-02

Joint ci ratio: 4.449273e-02	ci left: 1.087706e-02	ci right 1.137344e-02	k: 7675	n:690000
Cons ci ratio: 5.650321e-04	ci left: 9.855868e-01	ci right 9.861453e-01	k: 680249	n:690000
KS ci ratio: 1.049987e-01	ci left: 1.910068e-03	ci right 2.123133e-03	k: 1390	n:690000
ZNF814   690000 perm   341 sec   (2022 perm/sec)   p_kst 2.014493e-03   p_cons 9.858681e-01   p_joint 1.112319e-02

Joint ci ratio: 4.448752e-02	ci left: 1.072589e-02	ci right 1.121531e-02	k: 7678	n:700000
Cons ci ratio: 5.609434e-04	ci left: 9.855908e-01	ci right 9.861452e-01	k: 690109	n:700000
KS ci ratio: 1.045493e-01	ci left: 1.899474e-03	ci right 2.110395e-03	k: 1402	n:700000
ZNF814   700000 perm   349 sec   (2007 perm/sec)   p_kst 2.002857e-03   p_cons 9.858700e-01   p_joint 1.096857e-02

Joint ci ratio: 4.520764e-02	ci left: 1.024192e-02	ci right 1.071702e-02	k: 7439	n:710000
Cons ci ratio: 5.573080e-04	ci left: 9.855761e-01	ci right 9.861269e-01	k: 699956	n:710000
KS ci ratio: 1.037390e-01	ci left: 1.902900e-03	ci right 2.112464e-03	k: 1424	n:710000
ZNF814   710000 perm   357 sec   (1990 perm/sec)   p_kst 2.005634e-03   p_cons 9.858535e-01   p_joint 1.047746e-02

Joint ci ratio: 4.491303e-02	ci left: 1.023424e-02	ci right 1.070582e-02	k: 7537	n:720000
Cons ci ratio: 5.532457e-04	ci left: 9.855871e-01	ci right 9.861339e-01	k: 709821	n:720000
KS ci ratio: 1.030543e-01	ci left: 1.902177e-03	ci right 2.110195e-03	k: 1443	n:720000
ZNF814   720000 perm   365 sec   (1974 perm/sec)   p_kst 2.004167e-03   p_cons 9.858625e-01   p_joint 1.046806e-02

Joint ci ratio: 4.462410e-02	ci left: 1.022679e-02	ci right 1.069491e-02	k: 7635	n:730000
Cons ci ratio: 5.493788e-04	ci left: 9.855923e-01	ci right 9.861353e-01	k: 719682	n:730000
KS ci ratio: 1.025588e-01	ci left: 1.894805e-03	ci right 2.100960e-03	k: 1457	n:730000
ZNF814   730000 perm   373 sec   (1957 perm/sec)   p_kst 1.995890e-03   p_cons 9.858658e-01   p_joint 1.045890e-02

Joint ci ratio: 4.468349e-02	ci left: 1.006318e-02	ci right 1.052444e-02	k: 7616	n:740000
Cons ci ratio: 5.460151e-04	ci left: 9.855756e-01	ci right 9.861152e-01	k: 729527	n:740000
KS ci ratio: 1.017247e-01	ci left: 1.900804e-03	ci right 2.105829e-03	k: 1481	n:740000
ZNF814   740000 perm   381 sec   (1941 perm/sec)   p_kst 2.001351e-03   p_cons 9.858473e-01   p_joint 1.029189e-02

Joint ci ratio: 4.329268e-02	ci left: 1.057917e-02	ci right 1.104862e-02	k: 8109	n:750000
Cons ci ratio: 5.426596e-04	ci left: 9.855620e-01	ci right 9.860983e-01	k: 739374	n:750000
KS ci ratio: 1.009442e-01	ci left: 1.905349e-03	ci right 2.109195e-03	k: 1504	n:750000
ZNF814   750000 perm   390 sec   (1923 perm/sec)   p_kst 2.005333e-03   p_cons 9.858320e-01   p_joint 1.081200e-02

Joint ci ratio: 4.230760e-02	ci left: 1.093336e-02	ci right 1.140722e-02	k: 8488	n:760000
Cons ci ratio: 5.388824e-04	ci left: 9.855740e-01	ci right 9.861065e-01	k: 749240	n:760000
KS ci ratio: 1.004452e-01	ci left: 1.899518e-03	ci right 2.101676e-03	k: 1519	n:760000
ZNF814   760000 perm   399 sec   (1907 perm/sec)   p_kst 1.998684e-03   p_cons 9.858421e-01   p_joint 1.116842e-02

Joint ci ratio: 4.223029e-02	ci left: 1.083248e-02	ci right 1.130108e-02	k: 8520	n:770000
Cons ci ratio: 5.360788e-04	ci left: 9.855385e-01	ci right 9.860682e-01	k: 759070	n:770000
KS ci ratio: 9.969359e-02	ci left: 1.903972e-03	ci right 2.104999e-03	k: 1542	n:770000
ZNF814   770000 perm   407 sec   (1892 perm/sec)   p_kst 2.002597e-03   p_cons 9.858052e-01   p_joint 1.106494e-02

Outputting figure to mutsig2_images.part000000000200/ZNF814.4_2580_770000_0.0020026_0.98581_0.011065.png
                gene_name: ZNF814
               theta_stop: 0.100 
                    nperm: 770000 
                     p_ks: 0.0020 
        ci_ks_bounds_left: 0.0019 
       ci_ks_bounds_right: 0.0021 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.011 

Current progress: 25 percent done.
ZNF98
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.465934e-03	ci left: 9.702664e-01	ci right 9.766537e-01	k: 9736	n:10000
KS ci ratio: 2.460214e-02	ci left: 7.084626e-01	ci right 7.262107e-01	k: 7174	n:10000
ZNF98   10000 perm   3 sec   (3435 perm/sec)   p_kst 7.174000e-01   p_cons 9.736000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000200/ZNF98.4_1735_10000_0.7174_0.9736_1.png
                gene_name: ZNF98
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
ZNF99
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.103187e-01	ci left: 1.058826e-01	ci right 1.183444e-01	k: 1120	n:10000
Cons ci ratio: 1.208445e-01	ci left: 8.941891e-02	ci right 1.010181e-01	k: 951	n:10000
KS ci ratio: 7.027581e-02	ci left: 2.288905e-01	ci right 2.456629e-01	k: 2372	n:10000
ZNF99   10000 perm   2 sec   (5140 perm/sec)   p_kst 2.372000e-01   p_cons 9.510000e-02   p_joint 1.120000e-01

Joint ci ratio: 7.301841e-02	ci left: 1.213321e-01	ci right 1.305770e-01	k: 2518	n:20000
Cons ci ratio: 8.336270e-02	ci left: 9.538497e-02	ci right 1.037319e-01	k: 1990	n:20000
KS ci ratio: 5.001078e-02	ci left: 2.290881e-01	ci right 2.408891e-01	k: 4699	n:20000
ZNF99   20000 perm   4 sec   (4640 perm/sec)   p_kst 2.349500e-01   p_cons 9.950000e-02   p_joint 1.259000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF99.4_3141_20000_0.23495_0.0995_0.1259.png
                gene_name: ZNF99
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.100 
      ci_cons_bounds_left: 0.095 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 75 percent done.
ZNF799
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/179984/iteration1/scatter.0000000200
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 200 -i PRAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/PRAD/1782408/0.ProcessCoverageForMutSig.Finished/PRAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/PRAD/1782099/0.MutSigPreprocess.Finished/PRAD.patients.txt -genes /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_genelist.txt -b hg19 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg19/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg19 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

*** Scatter stdandard err:

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:23:00 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22794
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:23:03 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22798
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:23:00 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22804
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:23:21 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22814
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:23:18 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22817
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:23:35 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22821
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:24:00 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22824
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:24:28 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22826
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:24:32 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22830
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:25:02 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22833
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:25:11 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22837
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:25:25 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22841
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:26:01 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22844
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:26:29 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22846
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:26:32 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22849
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:26:23 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22851
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:26:35 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22854
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:26:55 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22857
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:27:16 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22859
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:27:07 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22860
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:27:06 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22863
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:27:36 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22866
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:27:36 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22869
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:30:27 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22873
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:30:36 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22876
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:30:59 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22882
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:31:09 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22889
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:31:17 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22895
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:31:24 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22900
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:31:17 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22901
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:31:56 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22903
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:32:07 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22905
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:32:05 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22906
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:33:21 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22908
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:33:17 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22910
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:34:20 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22912
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:34:20 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22914
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:35:02 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22915
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:35:17 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22918
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:35:22 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22920
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:35:24 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22921
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:35:34 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22923
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:36:02 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22927
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:36:05 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22929
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:36:04 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22933
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:36:13 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22940
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:36:31 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22947
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:36:28 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22952
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:36:32 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22955
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:36:36 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22959
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:36:38 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22962
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:37:00 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22965
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:37:08 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22966
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:37:15 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22968
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:37:22 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22969
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:37:34 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22974
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:38:15 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 22988
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:38:18 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23002
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:39:02 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23015
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:39:01 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23028
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:39:01 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23034
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:39:04 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23037
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:39:29 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23044
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:39:29 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23053
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:39:26 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23062
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:40:15 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23069
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:40:27 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23077
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:40:36 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23082
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:40:27 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23087
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:40:45 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23096
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:41:12 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23103
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:41:40 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23109
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:41:44 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23119
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:42:37 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23128
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:42:37 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23132
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:42:40 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23142
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:42:51 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23162
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:42:57 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23176
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:42:57 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23191
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:43:25 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23199
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:43:41 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23211
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:43:58 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23222
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:43:56 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23227
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:44:28 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23243
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:44:42 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23264
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:44:42 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23274
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:44:43 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23294
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:45:02 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23298
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:44:59 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23311
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:44:57 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23320
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:45:00 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23335
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:45:35 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23338
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:45:33 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23339
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:45:33 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23344
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:45:33 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23349
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:45:43 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23360
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:45:43 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23383
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:45:43 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23398
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:45:44 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23407
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:45:47 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23413
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:45:56 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23419
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:45:56 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23429
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:46:39 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23431
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:46:39 2012
 vncext:      VNC extension running!
 vncext:      vncExtInit: unable to bind listening socket: Address already in
              use (98)
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:46:39 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23456
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:46:44 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23459
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:47:35 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23462
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:47:35 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23471
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:47:35 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23476
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:47:35 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23486
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:47:43 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23503
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:48:02 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23510
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:48:00 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23522
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:48:08 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23546
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:48:35 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23566
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:48:59 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23580
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:49:46 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23592
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:49:46 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23611
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:49:50 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23625
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:49:40 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23639
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:49:40 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23656
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:50:18 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23666
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:50:16 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23678
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:50:19 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23686
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:50:13 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23693
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:50:15 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23697
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:50:46 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23706
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:50:44 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23741
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:51:21 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23759
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:51:20 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23772
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:51:46 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23792
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:51:47 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23815
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:51:45 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23831
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:51:50 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23847
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:51:48 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23857
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:52:20 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23866
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:52:53 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23870
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:52:48 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23873
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:52:51 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23879
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:52:49 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23890
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:53:00 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23898
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:53:25 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23910
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:54:06 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23920
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:54:04 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23926
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:53:52 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23937
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:54:02 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23954
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:54:29 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23978
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:54:56 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 23992
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:55:05 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24001
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:55:05 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24012
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:55:37 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24025
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:55:49 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24035
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:55:46 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24048
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:55:44 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24051
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:56:02 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24053
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:56:06 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24057
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:56:11 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24061
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:56:12 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24064
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:56:41 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24069
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:56:41 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24076
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:57:13 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24090
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:57:10 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24101
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:57:47 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24107
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:57:44 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24117
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:58:12 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24125
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:58:12 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24132
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:58:43 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24138
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:59:17 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24146
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:59:21 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24150
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:59:25 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24154
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:59:21 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24160
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:59:51 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24162
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:59:52 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24163
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:59:50 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24164
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:59:58 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24165
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:59:51 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24168
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 22:59:51 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24171
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:01:08 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24173
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:01:02 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24175
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:00:54 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24179
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:01:24 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24185
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:01:26 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24189
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:01:27 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24193
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:01:24 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24204
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:01:57 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24224
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:01:55 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24231
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:01:57 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24237
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:02:26 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24246
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:02:27 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24255
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:02:27 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24262
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:02:25 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24267
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:02:31 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24273
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:02:58 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24279
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:03:03 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24280
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:02:57 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24283
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:03:03 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24289
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:03:01 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24294
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:03:43 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24296
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:03:32 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24298
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:03:29 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24299
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.
*** Scatter retry log:
==> scatter.0000000001.tries <==
1
==> scatter.0000000002.tries <==
1
==> scatter.0000000003.tries <==
1
==> scatter.0000000004.tries <==
1
==> scatter.0000000005.tries <==
1
==> scatter.0000000006.tries <==
1
==> scatter.0000000007.tries <==
1
==> scatter.0000000008.tries <==
1
==> scatter.0000000009.tries <==
1
==> scatter.0000000010.tries <==
1
==> scatter.0000000011.tries <==
1
==> scatter.0000000012.tries <==
1
==> scatter.0000000013.tries <==
1
==> scatter.0000000014.tries <==
1
==> scatter.0000000015.tries <==
1
==> scatter.0000000016.tries <==
1
==> scatter.0000000017.tries <==
1
==> scatter.0000000018.tries <==
1
==> scatter.0000000019.tries <==
1
==> scatter.0000000020.tries <==
1
==> scatter.0000000021.tries <==
1
==> scatter.0000000022.tries <==
1
==> scatter.0000000023.tries <==
1
==> scatter.0000000024.tries <==
1
==> scatter.0000000025.tries <==
1
==> scatter.0000000026.tries <==
1
==> scatter.0000000027.tries <==
1
==> scatter.0000000028.tries <==
1
==> scatter.0000000029.tries <==
1
==> scatter.0000000030.tries <==
1
==> scatter.0000000031.tries <==
1
==> scatter.0000000032.tries <==
1
==> scatter.0000000033.tries <==
1
==> scatter.0000000034.tries <==
1
==> scatter.0000000035.tries <==
1
==> scatter.0000000036.tries <==
1
==> scatter.0000000037.tries <==
1
==> scatter.0000000038.tries <==
1
==> scatter.0000000039.tries <==
1
==> scatter.0000000040.tries <==
1
==> scatter.0000000041.tries <==
1
==> scatter.0000000042.tries <==
1
==> scatter.0000000043.tries <==
1
==> scatter.0000000044.tries <==
1
==> scatter.0000000045.tries <==
1
==> scatter.0000000046.tries <==
1
==> scatter.0000000047.tries <==
1
==> scatter.0000000048.tries <==
1
==> scatter.0000000049.tries <==
1
==> scatter.0000000050.tries <==
1
==> scatter.0000000051.tries <==
1
==> scatter.0000000052.tries <==
1
==> scatter.0000000053.tries <==
1
==> scatter.0000000054.tries <==
1
==> scatter.0000000055.tries <==
1
==> scatter.0000000056.tries <==
1
==> scatter.0000000057.tries <==
1
==> scatter.0000000058.tries <==
1
==> scatter.0000000059.tries <==
1
==> scatter.0000000060.tries <==
1
==> scatter.0000000061.tries <==
1
==> scatter.0000000062.tries <==
1
==> scatter.0000000063.tries <==
1
==> scatter.0000000064.tries <==
1
==> scatter.0000000065.tries <==
1
==> scatter.0000000066.tries <==
1
==> scatter.0000000067.tries <==
1
==> scatter.0000000068.tries <==
1
==> scatter.0000000069.tries <==
1
==> scatter.0000000070.tries <==
1
==> scatter.0000000071.tries <==
1
==> scatter.0000000072.tries <==
1
==> scatter.0000000073.tries <==
1
==> scatter.0000000074.tries <==
1
==> scatter.0000000075.tries <==
1
==> scatter.0000000076.tries <==
1
==> scatter.0000000077.tries <==
1
==> scatter.0000000078.tries <==
1
==> scatter.0000000079.tries <==
1
==> scatter.0000000080.tries <==
1
==> scatter.0000000081.tries <==
1
==> scatter.0000000082.tries <==
1
==> scatter.0000000083.tries <==
1
==> scatter.0000000084.tries <==
1
==> scatter.0000000085.tries <==
1
==> scatter.0000000086.tries <==
1
==> scatter.0000000087.tries <==
1
==> scatter.0000000088.tries <==
1
==> scatter.0000000089.tries <==
1
==> scatter.0000000090.tries <==
1
==> scatter.0000000091.tries <==
1
==> scatter.0000000092.tries <==
1
==> scatter.0000000093.tries <==
1
==> scatter.0000000094.tries <==
1
==> scatter.0000000095.tries <==
1
==> scatter.0000000096.tries <==
1
==> scatter.0000000097.tries <==
1
==> scatter.0000000098.tries <==
1
==> scatter.0000000099.tries <==
1
==> scatter.0000000100.tries <==
1
==> scatter.0000000101.tries <==
1
==> scatter.0000000102.tries <==
1
==> scatter.0000000103.tries <==
1
==> scatter.0000000104.tries <==
1
==> scatter.0000000105.tries <==
1
==> scatter.0000000106.tries <==
1
==> scatter.0000000107.tries <==
1
==> scatter.0000000108.tries <==
1
==> scatter.0000000109.tries <==
1
==> scatter.0000000110.tries <==
1
==> scatter.0000000111.tries <==
1
==> scatter.0000000112.tries <==
1
==> scatter.0000000113.tries <==
1
==> scatter.0000000114.tries <==
1
==> scatter.0000000115.tries <==
1
==> scatter.0000000116.tries <==
1
==> scatter.0000000117.tries <==
1
==> scatter.0000000118.tries <==
1
==> scatter.0000000119.tries <==
1
==> scatter.0000000120.tries <==
1
==> scatter.0000000121.tries <==
1
==> scatter.0000000122.tries <==
1
==> scatter.0000000123.tries <==
1
==> scatter.0000000124.tries <==
1
==> scatter.0000000125.tries <==
1
==> scatter.0000000126.tries <==
1
==> scatter.0000000127.tries <==
1
==> scatter.0000000128.tries <==
1
==> scatter.0000000129.tries <==
1
==> scatter.0000000130.tries <==
1
==> scatter.0000000131.tries <==
1
==> scatter.0000000132.tries <==
1
==> scatter.0000000133.tries <==
1
==> scatter.0000000134.tries <==
1
==> scatter.0000000135.tries <==
1
==> scatter.0000000136.tries <==
1
==> scatter.0000000137.tries <==
1
==> scatter.0000000138.tries <==
1
==> scatter.0000000139.tries <==
1
==> scatter.0000000140.tries <==
1
==> scatter.0000000141.tries <==
1
==> scatter.0000000142.tries <==
1
==> scatter.0000000143.tries <==
1
==> scatter.0000000144.tries <==
1
==> scatter.0000000145.tries <==
1
==> scatter.0000000146.tries <==
1
==> scatter.0000000147.tries <==
1
==> scatter.0000000148.tries <==
1
==> scatter.0000000149.tries <==
1
==> scatter.0000000150.tries <==
1
==> scatter.0000000151.tries <==
1
==> scatter.0000000152.tries <==
1
==> scatter.0000000153.tries <==
1
==> scatter.0000000154.tries <==
1
==> scatter.0000000155.tries <==
1
==> scatter.0000000156.tries <==
1
==> scatter.0000000157.tries <==
1
==> scatter.0000000158.tries <==
1
==> scatter.0000000159.tries <==
1
==> scatter.0000000160.tries <==
1
==> scatter.0000000161.tries <==
1
==> scatter.0000000162.tries <==
1
==> scatter.0000000163.tries <==
1
==> scatter.0000000164.tries <==
1
==> scatter.0000000165.tries <==
1
==> scatter.0000000166.tries <==
1
==> scatter.0000000167.tries <==
1
==> scatter.0000000168.tries <==
1
==> scatter.0000000169.tries <==
1
==> scatter.0000000170.tries <==
1
==> scatter.0000000171.tries <==
1
==> scatter.0000000172.tries <==
1
==> scatter.0000000173.tries <==
1
==> scatter.0000000174.tries <==
1
==> scatter.0000000175.tries <==
1
==> scatter.0000000176.tries <==
1
==> scatter.0000000177.tries <==
1
==> scatter.0000000178.tries <==
1
==> scatter.0000000179.tries <==
1
==> scatter.0000000180.tries <==
1
==> scatter.0000000181.tries <==
1
==> scatter.0000000182.tries <==
1
==> scatter.0000000183.tries <==
1
==> scatter.0000000184.tries <==
1
==> scatter.0000000185.tries <==
1
==> scatter.0000000186.tries <==
1
==> scatter.0000000187.tries <==
1
==> scatter.0000000188.tries <==
1
==> scatter.0000000189.tries <==
1
==> scatter.0000000190.tries <==
1
==> scatter.0000000191.tries <==
1
==> scatter.0000000192.tries <==
1
==> scatter.0000000193.tries <==
1
==> scatter.0000000194.tries <==
1
==> scatter.0000000195.tries <==
1
==> scatter.0000000196.tries <==
1
==> scatter.0000000197.tries <==
1
==> scatter.0000000198.tries <==
1
==> scatter.0000000199.tries <==
1
==> scatter.0000000200.tries <==
1


PS:

Read file <scatter-gather.err.txt> for stderr output of this job.

*** Scatter Gather stdandard err:

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 04:45:58 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 24302
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.
ls: iteration1/sg-next-iteration.txt: No such file or directory


PS:

Read file <iterator.err.txt> for stderr output of this job.

